-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_10/scaffold_10_14112166-14251589

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_25842-T1
Valid prediction for GlimmerHMM_glimmerT_25850-T1
Valid prediction for snap_scaffold_10-snap.2813-T1
Valid prediction for snap_scaffold_10-snap.2836-T1
Valid prediction for GlimmerHMM_glimmerT_25841-T1
Valid prediction for GlimmerHMM_glimmerT_25846-T1
Valid prediction for Augustus_model.g17199.t1
Valid prediction for Augustus_model.g17197.t1
Valid prediction for snap_scaffold_10-snap.2832-T1
Couldn't classify 45268, 45300
Sorry, prediction pasa_asmbl_3890.p1 fails validation.
(CCA)	 GA	45268-45300	GT	AGG
(GAA)	 AG	47804-47826	GT	AAG
(TAA)	 AG	49710-49733	GT	CCG
(AAA)	 AG	49909-49929	GT	AGG
(CTT)	 AG	50881-51053	GT	GGG
(ACC)	 AG	51447-51477	GT	AAG
(GGT)	 AG	53478-53574	AC	AGA
-recovered pasa_asmbl_3890.p1, terminal, 53478, 53574
-recovered pasa_asmbl_3890.p1, internal, 47804, 47826
-recovered pasa_asmbl_3890.p1, internal, 49710, 49733
-recovered pasa_asmbl_3890.p1, internal, 49909, 49929
-recovered pasa_asmbl_3890.p1, internal, 50881, 51053
-recovered pasa_asmbl_3890.p1, internal, 51447, 51477
Valid prediction for snap_scaffold_10-snap.2822-T1
Valid prediction for snap_scaffold_10-snap.2817-T1
Valid prediction for GlimmerHMM_glimmerT_25840-T1
Valid prediction for snap_scaffold_10-snap.2838-T1
Valid prediction for GlimmerHMM_glimmerT_25839-T1
Valid prediction for Augustus_model.g17198.t1
Valid prediction for snap_scaffold_10-snap.2843-T1
Valid prediction for GlimmerHMM_glimmerT_25835-T1
Valid prediction for snap_scaffold_10-snap.2829-T1
Valid prediction for Augustus_model.g17194.t1
Valid prediction for Augustus_model.g17196.t1
Valid prediction for snap_scaffold_10-snap.2834-T1
Valid prediction for snap_scaffold_10-snap.2824-T1
Valid prediction for snap_scaffold_10-snap.2831-T1
Valid prediction for GlimmerHMM_glimmerT_25852-T1
Valid prediction for snap_scaffold_10-snap.2815-T1
Valid prediction for snap_scaffold_10-snap.2839-T1
Valid prediction for snap_scaffold_10-snap.2827-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_25837-T1
Valid prediction for snap_scaffold_10-snap.2816-T1
Valid prediction for snap_scaffold_10-snap.2818-T1
Valid prediction for snap_scaffold_10-snap.2837-T1
Valid prediction for snap_scaffold_10-snap.2840-T1
Valid prediction for GlimmerHMM_glimmerT_25833-T1
Valid prediction for snap_scaffold_10-snap.2833-T1
Valid prediction for snap_scaffold_10-snap.2820-T1
Valid prediction for GlimmerHMM_glimmerT_25849-T1
Valid prediction for Augustus_model.g17193.t1
Valid prediction for snap_scaffold_10-snap.2814-T1
Valid prediction for snap_scaffold_10-snap.2842-T1
Valid prediction for GlimmerHMM_glimmerT_25847-T1
Valid prediction for snap_scaffold_10-snap.2830-T1
Valid prediction for snap_scaffold_10-snap.2819-T1
Valid prediction for snap_scaffold_10-snap.2835-T1
Valid prediction for GlimmerHMM_glimmerT_25832-T1
Valid prediction for Augustus_model.g17195.t1
Valid prediction for snap_scaffold_10-snap.2828-T1
Valid prediction for snap_scaffold_10-snap.2821-T1
Valid prediction for Augustus_model.g17192.t1
Valid prediction for GlimmerHMM_glimmerT_25838-T1
Valid prediction for GlimmerHMM_glimmerT_25836-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_25834-T1
Valid prediction for GlimmerHMM_glimmerT_25848-T1
Valid prediction for GlimmerHMM_glimmerT_25843-T1
Valid prediction for GlimmerHMM_glimmerT_25845-T1
Valid prediction for snap_scaffold_10-snap.2826-T1
Valid prediction for snap_scaffold_10-snap.2825-T1
Valid prediction for GlimmerHMM_glimmerT_25851-T1
Valid prediction for Augustus_model.g17200.t1
Valid prediction for GlimmerHMM_glimmerT_25844-T1
Valid prediction for snap_scaffold_10-snap.2841-T1
Valid prediction for snap_scaffold_10-snap.2823-T1
Valid prediction for Augustus_model.g17191.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4098, rend_intergenic: 3554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 7430, rend_intergenic: 4238  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9424, rend_intergenic: 8575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25099, rend_intergenic: 17372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34794, rend_intergenic: 31045  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35270, rend_intergenic: 34968  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44036, rend_intergenic: 35672  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45347, rend_intergenic: 44625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46726, rend_intergenic: 45993  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53925, rend_intergenic: 47348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60679, rend_intergenic: 56218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64994, rend_intergenic: 62582  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72199, rend_intergenic: 67412  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87117, rend_intergenic: 72825  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90360, rend_intergenic: 87141  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113380, rend_intergenic: 90588  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115120, rend_intergenic: 113983  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133166, rend_intergenic: 123007  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 139424
-exon list size: 252


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.8    
3.1    
3.5    
3.9    
4.3    
4.7    
5.1    
5.5    
5.9    
6.3    
6.7    
7.1    
7.5    
7.9    
8.3    
8.7    
9.1    
9.4    
9.8    
10.2    
10.6    
11.0    
11.4    
11.8    
12.2    
12.6    
13.0    
13.4    
13.8    
14.2    
14.6    
15.0    
15.4    
15.7    
16.1    
16.5    
16.9    
17.3    
17.7    
18.1    
18.5    
18.9    
19.3    
19.7    
20.1    
20.5    
20.9    
21.3    
21.7    
22.0    
22.4    
22.8    
23.2    
23.6    
24.0    
24.4    
24.8    
25.2    
25.6    
26.0    
26.4    
26.8    
27.2    
27.6    
28.0    
28.3    
28.7    
29.1    
29.5    
29.9    
30.3    
30.7    
31.1    
31.5    
31.9    
32.3    
32.7    
33.1    
33.5    
33.9    
34.3    
34.6    
35.0    
35.4    
35.8    
36.2    
36.6    
37.0    
37.4    
37.8    
38.2    
38.6    
39.0    
39.4    
39.8    
40.2    
40.6    
40.9    
41.3    
41.7    
42.1    
42.5    
42.9    
43.3    
43.7    
44.1    
44.5    
44.9    
45.3    
45.7    
46.1    
46.5    
46.9    
47.2    
47.6    
48.0    
48.4    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.6    
52.0    
52.4    
52.8    
53.1    
53.5    
53.9    
54.3    
54.7    
55.1    
55.5    
55.9    
56.3    
56.7    
57.1    
57.5    
57.9    
58.3    
58.7    
59.1    
59.4    
59.8    
60.2    
60.6    
61.0    
61.4    
61.8    
62.2    
62.6    
63.0    
63.4    
63.8    
64.2    
64.6    
65.0    
65.4    
65.7    
66.1    
66.5    
66.9    
67.3    
67.7    
68.1    
68.5    
68.9    
69.3    
69.7    
70.1    
70.5    
70.9    
71.3    
71.7    
72.0    
72.4    
72.8    
73.2    
73.6    
74.0    
74.4    
74.8    
75.2    
75.6    
76.0    
76.4    
76.8    
77.2    
77.6    
78.0    
78.3    
78.7    
79.1    
79.5    
79.9    
80.3    
80.7    
81.1    
81.5    
81.9    
82.3    
82.7    
83.1    
83.5    
83.9    
84.3    
84.6    
85.0    
85.4    
85.8    
86.2    
86.6    
87.0    
87.4    
87.8    
88.2    
88.6    
89.0    
89.4    
89.8    
90.2    
90.6    
90.9    
91.3    
91.7    
92.1    
92.5    
92.9    
93.3    
93.7    
94.1    
94.5    
94.9    
95.3    
95.7    
96.1    
96.5    
96.9    
97.2    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 4098, rend_intergenic: 3554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 7430, rend_intergenic: 4238  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9424, rend_intergenic: 8575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25099, rend_intergenic: 17372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34794, rend_intergenic: 31045  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35270, rend_intergenic: 34968  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44036, rend_intergenic: 35672  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45347, rend_intergenic: 44625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46726, rend_intergenic: 45993  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53925, rend_intergenic: 47348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60679, rend_intergenic: 56218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64994, rend_intergenic: 62582  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72199, rend_intergenic: 67412  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87117, rend_intergenic: 72825  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90360, rend_intergenic: 87141  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113380, rend_intergenic: 90588  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115120, rend_intergenic: 113983  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133166, rend_intergenic: 123007  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support