-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_10/scaffold_10_13973279-14115718

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_10-snap.2801-T1
Valid prediction for Augustus_model.g17186.t1
Valid prediction for GlimmerHMM_glimmerT_25815-T1
Couldn't classify 10152, 10245
Couldn't classify 11698, 11740
Sorry, prediction pasa_asmbl_3807.p1 fails validation.
(GTC)	 TA	10152-10245	GT	AGG
(AGT)	 AG	11147-11180	GT	AGG
(GTG)	 AG	11481-11612	GT	AGG
(CAA)	 AG	11698-11740	GC	GAG
-recovered pasa_asmbl_3807.p1, terminal, 11147, 11180
-recovered pasa_asmbl_3807.p1, internal, 11147, 11180
-recovered pasa_asmbl_3807.p1, internal, 11481, 11612
-recovered pasa_asmbl_3807.p1, internal, 11698, 11740
Valid prediction for snap_scaffold_10-snap.2793-T1
Valid prediction for GlimmerHMM_glimmerT_25812-T1
Valid prediction for snap_scaffold_10-snap.2782-T1
Valid prediction for GlimmerHMM_glimmerT_25829-T1
Valid prediction for GlimmerHMM_glimmerT_25813-T1
Valid prediction for Augustus_model.g17188.t1
Valid prediction for GlimmerHMM_glimmerT_25819-T1
Valid prediction for GlimmerHMM_glimmerT_25814-T1
Valid prediction for snap_scaffold_10-snap.2792-T1
Valid prediction for GlimmerHMM_glimmerT_25817-T1
Valid prediction for snap_scaffold_10-snap.2797-T1
Valid prediction for Augustus_model.g17189.t1
Valid prediction for GlimmerHMM_glimmerT_25821-T1
Valid prediction for snap_scaffold_10-snap.2778-T1
Valid prediction for Augustus_model.g17190.t1
Valid prediction for Augustus_model.g17185.t1
Valid prediction for GlimmerHMM_glimmerT_25824-T1
Couldn't classify 43716, 43815
Couldn't classify 44983, 45121
Sorry, prediction pasa_asmbl_3843.p1 fails validation.
(GTC)	 AG	43716-43815	GT	AGG
(GTG)	 AG	44628-44712	GT	ATG
(GAC)	 AG	44983-45121	GT	CGG
-recovered pasa_asmbl_3843.p1, internal, 43716, 43815
-recovered pasa_asmbl_3843.p1, internal, 44628, 44712
-recovered pasa_asmbl_3843.p1, internal, 44983, 45121
Valid prediction for snap_scaffold_10-snap.2806-T1
Valid prediction for GlimmerHMM_glimmerT_25831-T1
Valid prediction for snap_scaffold_10-snap.2791-T1
Valid prediction for snap_scaffold_10-snap.2812-T1
Valid prediction for Augustus_model.g17182.t1
Valid prediction for GlimmerHMM_glimmerT_25825-T1
Valid prediction for snap_scaffold_10-snap.2803-T1
Valid prediction for GlimmerHMM_glimmerT_25830-T1
Couldn't classify 23836, 23910
Sorry, prediction pasa_asmbl_3638.p1 fails validation.
(ATG)	 AC	15237-15261	GT	AGG
(AGT)	 AG	15702-15752	GT	TGG
(GTA)	 AG	16008-16091	GT	GGG
(AGG)	 AG	16788-16884	GT	AGG
(GAA)	 AG	17178-17379	GT	ACG
(AAT)	 AG	18625-18684	GT	TAG
(GTG)	 AG	18959-19092	GT	TGG
(CCA)	 AG	21480-21633	GT	AGG
(GGT)	 AG	23836-23910	GG	ACG
-recovered pasa_asmbl_3638.p1, initial, 15237, 15261
-recovered pasa_asmbl_3638.p1, internal, 15702, 15752
-recovered pasa_asmbl_3638.p1, internal, 16008, 16091
-recovered pasa_asmbl_3638.p1, internal, 16788, 16884
-recovered pasa_asmbl_3638.p1, internal, 17178, 17379
-recovered pasa_asmbl_3638.p1, internal, 18625, 18684
-recovered pasa_asmbl_3638.p1, internal, 18959, 19092
-recovered pasa_asmbl_3638.p1, internal, 21480, 21633
Valid prediction for snap_scaffold_10-snap.2795-T1
Valid prediction for GlimmerHMM_glimmerT_25826-T1
Valid prediction for GlimmerHMM_glimmerT_25820-T1
Valid prediction for snap_scaffold_10-snap.2786-T1
Valid prediction for Augustus_model.g17184.t1
Valid prediction for snap_scaffold_10-snap.2790-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g17187.t1
Valid prediction for snap_scaffold_10-snap.2799-T1
Valid prediction for snap_scaffold_10-snap.2804-T1
Valid prediction for GlimmerHMM_glimmerT_25827-T1
Valid prediction for snap_scaffold_10-snap.2788-T1
Valid prediction for snap_scaffold_10-snap.2794-T1
Valid prediction for snap_scaffold_10-snap.2781-T1
Valid prediction for snap_scaffold_10-snap.2800-T1
Valid prediction for GlimmerHMM_glimmerT_25828-T1
Valid prediction for snap_scaffold_10-snap.2805-T1
Valid prediction for snap_scaffold_10-snap.2796-T1
Valid prediction for GlimmerHMM_glimmerT_25818-T1
Valid prediction for GlimmerHMM_glimmerT_25816-T1
Valid prediction for snap_scaffold_10-snap.2784-T1
Valid prediction for GlimmerHMM_glimmerT_25823-T1
Valid prediction for Augustus_model.g17183.t1
Valid prediction for snap_scaffold_10-snap.2789-T1
Valid prediction for snap_scaffold_10-snap.2811-T1
Valid prediction for snap_scaffold_10-snap.2777-T1
Valid prediction for snap_scaffold_10-snap.2780-T1
Valid prediction for snap_scaffold_10-snap.2802-T1
Valid prediction for snap_scaffold_10-snap.2779-T1
Valid prediction for snap_scaffold_10-snap.2808-T1
Valid prediction for GlimmerHMM_glimmerT_25822-T1
Valid prediction for snap_scaffold_10-snap.2798-T1
Valid prediction for snap_scaffold_10-snap.2810-T1
Valid prediction for snap_scaffold_10-snap.2783-T1
Valid prediction for snap_scaffold_10-snap.2807-T1
Valid prediction for snap_scaffold_10-snap.2787-T1
Valid prediction for snap_scaffold_10-snap.2809-T1
Couldn't classify 75571, 75728
Sorry, prediction pasa_asmbl_4944.p1 fails validation.
(ATG)	 AG	73393-73582	GT	ATG
(ATG)	 AG	75571-75728	GG	ACG
-recovered pasa_asmbl_4944.p1, initial, 73393, 73582
-recovered pasa_asmbl_4944.p1, internal, 73393, 73582
Valid prediction for snap_scaffold_10-snap.2785-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 35691, rend_intergenic: 15698  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49263, rend_intergenic: 37874  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52833, rend_intergenic: 51255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59773, rend_intergenic: 52897  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69048, rend_intergenic: 67934  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80589, rend_intergenic: 80349  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84443, rend_intergenic: 81528  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87301, rend_intergenic: 84939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96291, rend_intergenic: 88877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102628, rend_intergenic: 96745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111445, rend_intergenic: 105854  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133170, rend_intergenic: 121544  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138887, rend_intergenic: 136443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 142440
-exon list size: 335


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.1    
2.4    
2.7    
3.0    
3.3    
3.6    
3.9    
4.2    
4.5    
4.7    
5.0    
5.3    
5.6    
5.9    
6.2    
6.5    
6.8    
7.1    
7.4    
7.7    
8.0    
8.3    
8.6    
8.9    
9.2    
9.5    
9.8    
10.1    
10.4    
10.7    
11.0    
11.3    
11.6    
11.9    
12.2    
12.5    
12.8    
13.1    
13.4    
13.6    
13.9    
14.2    
14.5    
14.8    
15.1    
15.4    
15.7    
16.0    
16.3    
16.6    
16.9    
17.2    
17.5    
17.8    
18.1    
18.4    
18.7    
19.0    
19.3    
19.6    
19.9    
20.2    
20.5    
20.8    
21.1    
21.4    
21.7    
22.0    
22.3    
22.6    
22.8    
23.1    
23.4    
23.7    
24.0    
24.3    
24.6    
24.9    
25.2    
25.5    
25.8    
26.1    
26.4    
26.7    
27.0    
27.3    
27.6    
27.9    
28.2    
28.5    
28.8    
29.1    
29.4    
29.7    
30.0    
30.3    
30.6    
30.9    
31.2    
31.5    
31.8    
32.0    
32.3    
32.6    
32.9    
33.2    
33.5    
33.8    
34.1    
34.4    
34.7    
35.0    
35.3    
35.6    
35.9    
36.2    
36.5    
36.8    
37.1    
37.4    
37.7    
38.0    
38.3    
38.6    
38.9    
39.2    
39.5    
39.8    
40.1    
40.4    
40.7    
40.9    
41.2    
41.5    
41.8    
42.1    
42.4    
42.7    
43.0    
43.3    
43.6    
43.9    
44.2    
44.5    
44.8    
45.1    
45.4    
45.7    
46.0    
46.3    
46.6    
46.9    
47.2    
47.5    
47.8    
48.1    
48.4    
48.7    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.3    
51.6    
51.9    
52.2    
52.5    
52.8    
53.1    
53.4    
53.7    
54.0    
54.3    
54.6    
54.9    
55.2    
55.5    
55.8    
56.1    
56.4    
56.7    
57.0    
57.3    
57.6    
57.9    
58.2    
58.5    
58.8    
59.1    
59.3    
59.6    
59.9    
60.2    
60.5    
60.8    
61.1    
61.4    
61.7    
62.0    
62.3    
62.6    
62.9    
63.2    
63.5    
63.8    
64.1    
64.4    
64.7    
65.0    
65.3    
65.6    
65.9    
66.2    
66.5    
66.8    
67.1    
67.4    
67.7    
68.0    
68.2    
68.5    
68.8    
69.1    
69.4    
69.7    
70.0    
70.3    
70.6    
70.9    
71.2    
71.5    
71.8    
72.1    
72.4    
72.7    
73.0    
73.3    
73.6    
73.9    
74.2    
74.5    
74.8    
75.1    
75.4    
75.7    
76.0    
76.3    
76.6    
76.9    
77.2    
77.4    
77.7    
78.0    
78.3    
78.6    
78.9    
79.2    
79.5    
79.8    
80.1    
80.4    
80.7    
81.0    
81.3    
81.6    
81.9    
82.2    
82.5    
82.8    
83.1    
83.4    
83.7    
84.0    
84.3    
84.6    
84.9    
85.2    
85.5    
85.8    
86.1    
86.4    
86.6    
86.9    
87.2    
87.5    
87.8    
88.1    
88.4    
88.7    
89.0    
89.3    
89.6    
89.9    
90.2    
90.5    
90.8    
91.1    
91.4    
91.7    
92.0    
92.3    
92.6    
92.9    
93.2    
93.5    
93.8    
94.1    
94.4    
94.7    
95.0    
95.3    
95.5    
95.8    
96.1    
96.4    
96.7    
97.0    
97.3    
97.6    
97.9    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 22 predictions from path traversal
Error with prediction: snap lend_intergenic: 35691, rend_intergenic: 15698  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49263, rend_intergenic: 37874  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52833, rend_intergenic: 51255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59773, rend_intergenic: 52897  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69048, rend_intergenic: 67934  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80589, rend_intergenic: 80349  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84443, rend_intergenic: 81528  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87301, rend_intergenic: 84939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96291, rend_intergenic: 88877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102628, rend_intergenic: 96745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111445, rend_intergenic: 105854  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133170, rend_intergenic: 121544  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138887, rend_intergenic: 136443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support