-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_10/scaffold_10_13232844-13328500

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_10-snap.2620-T1
Valid prediction for pasa_asmbl_3591.p1
Valid prediction for snap_scaffold_10-snap.2639-T1
Valid prediction for snap_scaffold_10-snap.2630-T1
Valid prediction for snap_scaffold_10-snap.2628-T1
Valid prediction for snap_scaffold_10-snap.2615-T1
Valid prediction for snap_scaffold_10-snap.2625-T1
Valid prediction for snap_scaffold_10-snap.2636-T1
Valid prediction for snap_scaffold_10-snap.2617-T1
Valid prediction for GlimmerHMM_glimmerT_25698-T1
Valid prediction for HiQ_model.g17102.t1
Valid prediction for Augustus_model.g17095.t1
Valid prediction for Augustus_model.g17101.t1
Valid prediction for GlimmerHMM_glimmerT_25697-T1
Valid prediction for snap_scaffold_10-snap.2619-T1
Valid prediction for Augustus_model.g17093.t1
Valid prediction for GlimmerHMM_glimmerT_25702-T1
Valid prediction for Augustus_model.g17099.t1
Valid prediction for snap_scaffold_10-snap.2622-T1
Valid prediction for snap_scaffold_10-snap.2632-T1
Valid prediction for CodingQuarry_transcript_5627-T1
Valid prediction for GlimmerHMM_glimmerT_25706-T1
Valid prediction for GlimmerHMM_glimmerT_25700-T1
Valid prediction for GlimmerHMM_glimmerT_25704-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_10-snap.2624-T1
Valid prediction for CodingQuarry_transcript_5626-T1
Valid prediction for CodingQuarry_transcript_5628-T1
Valid prediction for GlimmerHMM_glimmerT_25708-T1
Valid prediction for Augustus_model.g17100.t1
Couldn't classify 47061, 47270
Sorry, prediction pasa_asmbl_4867.p1 fails validation.
(ATA)	 AA	47061-47270	GT	CGG
(GGG)	 AG	47898-48042	GT	AGG
(AGT)	 AG	48187-48277	GT	AAG
(ATT)	 AG	48451-48520	GT	AGG
(AAA)	 AG	48761-49651	TT	AAT
-recovered pasa_asmbl_4867.p1, terminal, 48761, 49651
-recovered pasa_asmbl_4867.p1, internal, 47898, 48042
-recovered pasa_asmbl_4867.p1, internal, 48187, 48277
-recovered pasa_asmbl_4867.p1, internal, 48451, 48520
Valid prediction for snap_scaffold_10-snap.2634-T1
Valid prediction for snap_scaffold_10-snap.2637-T1
Valid prediction for HiQ_model.g17103.t1
Valid prediction for GlimmerHMM_glimmerT_25710-T1
Valid prediction for GlimmerHMM_glimmerT_25705-T1
Valid prediction for Augustus_model.g17096.t1
Valid prediction for snap_scaffold_10-snap.2626-T1
Valid prediction for pasa_asmbl_4873.p1
Valid prediction for snap_scaffold_10-snap.2629-T1
Valid prediction for Augustus_model.g17092.t1
Valid prediction for snap_scaffold_10-snap.2623-T1
Valid prediction for GlimmerHMM_glimmerT_25696-T1
Valid prediction for GlimmerHMM_glimmerT_25703-T1
Valid prediction for GlimmerHMM_glimmerT_25699-T1
Valid prediction for GlimmerHMM_glimmerT_25707-T1
Valid prediction for snap_scaffold_10-snap.2621-T1
Valid prediction for Augustus_model.g17104.t1
Valid prediction for snap_scaffold_10-snap.2616-T1
Couldn't classify 8379, 8972
Sorry, prediction pasa_asmbl_4874.p1 fails validation.
(GAC)	 GA	8379-8972	GA	AAG
Valid prediction for GlimmerHMM_glimmerT_25701-T1
Couldn't classify 47844, 48042
Sorry, prediction pasa_asmbl_4868.p1 fails validation.
(TGG)	 TC	47844-48042	GT	AGG
(AGT)	 AG	48187-48277	GT	AAG
(ATT)	 AG	48451-48520	GT	AGG
(AAA)	 AG	48761-49651	TT	AAT
-recovered pasa_asmbl_4868.p1, terminal, 48761, 49651
-recovered pasa_asmbl_4868.p1, internal, 48187, 48277
-recovered pasa_asmbl_4868.p1, internal, 48451, 48520
Valid prediction for GlimmerHMM_glimmerT_25709-T1
Valid prediction for Augustus_model.g17097.t1
Valid prediction for snap_scaffold_10-snap.2627-T1
Valid prediction for snap_scaffold_10-snap.2631-T1
Valid prediction for Augustus_model.g17094.t1
Valid prediction for snap_scaffold_10-snap.2633-T1
Valid prediction for snap_scaffold_10-snap.2635-T1
Valid prediction for Augustus_model.g17098.t1
Valid prediction for snap_scaffold_10-snap.2638-T1
Valid prediction for snap_scaffold_10-snap.2618-T1
Couldn't classify 61769, 62173
Sorry, prediction pasa_asmbl_4862.p1 fails validation.
(AAG)	 TC	61769-62173	GA	GAG

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18241, rend_intergenic: 14016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21729, rend_intergenic: 19378  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23310, rend_intergenic: 21978  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25814, rend_intergenic: 23316  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63789, rend_intergenic: 59575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84475, rend_intergenic: 82501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93857, rend_intergenic: 89869  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 95657
-exon list size: 205


building trellis

0.5    
1.0    
1.4    
1.9    
2.4    
2.9    
3.4    
3.9    
4.3    
4.8    
5.3    
5.8    
6.3    
6.8    
7.2    
7.7    
8.2    
8.7    
9.2    
9.7    
10.1    
10.6    
11.1    
11.6    
12.1    
12.6    
13.0    
13.5    
14.0    
14.5    
15.0    
15.5    
15.9    
16.4    
16.9    
17.4    
17.9    
18.4    
18.8    
19.3    
19.8    
20.3    
20.8    
21.3    
21.7    
22.2    
22.7    
23.2    
23.7    
24.2    
24.6    
25.1    
25.6    
26.1    
26.6    
27.1    
27.5    
28.0    
28.5    
29.0    
29.5    
30.0    
30.4    
30.9    
31.4    
31.9    
32.4    
32.9    
33.3    
33.8    
34.3    
34.8    
35.3    
35.7    
36.2    
36.7    
37.2    
37.7    
38.2    
38.6    
39.1    
39.6    
40.1    
40.6    
41.1    
41.5    
42.0    
42.5    
43.0    
43.5    
44.0    
44.4    
44.9    
45.4    
45.9    
46.4    
46.9    
47.3    
47.8    
48.3    
48.8    
49.3    
49.8    
50.2    
50.7    
51.2    
51.7    
52.2    
52.7    
53.1    
53.6    
54.1    
54.6    
55.1    
55.6    
56.0    
56.5    
57.0    
57.5    
58.0    
58.5    
58.9    
59.4    
59.9    
60.4    
60.9    
61.4    
61.8    
62.3    
62.8    
63.3    
63.8    
64.3    
64.7    
65.2    
65.7    
66.2    
66.7    
67.1    
67.6    
68.1    
68.6    
69.1    
69.6    
70.0    
70.5    
71.0    
71.5    
72.0    
72.5    
72.9    
73.4    
73.9    
74.4    
74.9    
75.4    
75.8    
76.3    
76.8    
77.3    
77.8    
78.3    
78.7    
79.2    
79.7    
80.2    
80.7    
81.2    
81.6    
82.1    
82.6    
83.1    
83.6    
84.1    
84.5    
85.0    
85.5    
86.0    
86.5    
87.0    
87.4    
87.9    
88.4    
88.9    
89.4    
89.9    
90.3    
90.8    
91.3    
91.8    
92.3    
92.8    
93.2    
93.7    
94.2    
94.7    
95.2    
95.7    
96.1    
96.6    
97.1    
97.6    
98.1    
98.6    
99.0    
99.5    
-found 18 predictions from path traversal
Error with prediction: snap lend_intergenic: 18241, rend_intergenic: 14016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21729, rend_intergenic: 19378  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23310, rend_intergenic: 21978  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25814, rend_intergenic: 23316  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63789, rend_intergenic: 59575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84475, rend_intergenic: 82501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93857, rend_intergenic: 89869  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support