-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_10/scaffold_10_1321889-1489826 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_10-snap.317-T1 Valid prediction for GlimmerHMM_glimmerT_24106-T1 Valid prediction for snap_scaffold_10-snap.307-T1 Valid prediction for GlimmerHMM_glimmerT_24112-T1 Valid prediction for Augustus_model.g16073.t1 Valid prediction for snap_scaffold_10-snap.315-T1 Valid prediction for Augustus_model.g16070.t1 Valid prediction for snap_scaffold_10-snap.292-T1 Couldn't classify 163478, 163503 Couldn't classify 167048, 167163 Sorry, prediction pasa_asmbl_2946.p1 fails validation. (AAC) TG 163478-163503 GT AGG (TCT) AG 163632-163692 GT AGG (ATT) AG 163792-163977 GT AGG (GTT) AG 164177-164257 GT AAG (CTC) AG 164619-164767 GT GTG (GCG) AG 164918-165058 GT ACG (AGA) AG 165198-165297 GT AGG (ACG) AG 165528-165726 GT AGG (ATC) AG 165910-165986 GT AGG (ACT) AG 166308-166446 GT AGG (ACA) AG 166555-166740 GT AGG (GTC) AG 167048-167163 GT AGG -recovered pasa_asmbl_2946.p1, internal, 163632, 163692 -recovered pasa_asmbl_2946.p1, internal, 163792, 163977 -recovered pasa_asmbl_2946.p1, internal, 164177, 164257 -recovered pasa_asmbl_2946.p1, internal, 164619, 164767 -recovered pasa_asmbl_2946.p1, internal, 164918, 165058 -recovered pasa_asmbl_2946.p1, internal, 165198, 165297 -recovered pasa_asmbl_2946.p1, internal, 165528, 165726 -recovered pasa_asmbl_2946.p1, internal, 165910, 165986 -recovered pasa_asmbl_2946.p1, internal, 166308, 166446 -recovered pasa_asmbl_2946.p1, internal, 166555, 166740 -recovered pasa_asmbl_2946.p1, internal, 167048, 167163 Valid prediction for GlimmerHMM_glimmerT_24121-T1 Valid prediction for Augustus_model.g16080.t1 Couldn't classify 162953, 163056 Sorry, prediction pasa_asmbl_2945.p1 fails validation. (ATG) AG 161956-162000 GT TGG (TGT) AG 162087-162165 GT AGG (ATG) AG 162285-162330 GC AAG (AAT) AG 162437-162534 GT AGG (ATG) AG 162953-163056 AT GGA -recovered pasa_asmbl_2945.p1, initial, 161956, 162000 -recovered pasa_asmbl_2945.p1, initial, 162285, 162330 -recovered pasa_asmbl_2945.p1, internal, 161956, 162000 -recovered pasa_asmbl_2945.p1, internal, 162087, 162165 -recovered pasa_asmbl_2945.p1, internal, 162285, 162330 -recovered pasa_asmbl_2945.p1, internal, 162437, 162534 Valid prediction for snap_scaffold_10-snap.289-T1 Valid prediction for GlimmerHMM_glimmerT_24099-T1 Valid prediction for snap_scaffold_10-snap.286-T1 Valid prediction for Augustus_model.g16068.t1 Valid prediction for Augustus_model.g16077.t1 Valid prediction for snap_scaffold_10-snap.299-T1 Valid prediction for snap_scaffold_10-snap.304-T1 Valid prediction for snap_scaffold_10-snap.303-T1 Valid prediction for HiQ_model.g16081.t1 Valid prediction for GlimmerHMM_glimmerT_24122-T1 Valid prediction for pasa_asmbl_2930.p1 Couldn't classify 139185, 139250 Sorry, prediction Augustus_model.g16079.t1 fails validation. (AAC) AG 139185-139250 GT AGG (CTG) AG 139715-139993 CC AAC -recovered Augustus_model.g16079.t1, terminal, 139715, 139993 -recovered Augustus_model.g16079.t1, internal, 139185, 139250 Valid prediction for snap_scaffold_10-snap.291-T1 Valid prediction for snap_scaffold_10-snap.288-T1 Valid prediction for GlimmerHMM_glimmerT_24123-T1 Valid prediction for Augustus_model.g16072.t1 Valid prediction for snap_scaffold_10-snap.296-T1 Valid prediction for GlimmerHMM_glimmerT_24108-T1 Valid prediction for snap_scaffold_10-snap.298-T1 Valid prediction for GlimmerHMM_glimmerT_24110-T1 Valid prediction for snap_scaffold_10-snap.314-T1 Valid prediction for Augustus_model.g16071.t1 Valid prediction for CodingQuarry_transcript_5283-T1 Valid prediction for GlimmerHMM_glimmerT_24119-T1 Valid prediction for snap_scaffold_10-snap.310-T1 Couldn't classify 117429, 117584 Sorry, prediction pasa_asmbl_2940.p1 fails validation. (GAC) CT 117429-117584 GT AGG (ATC) AG 118134-118229 GT AGG (GTT) AG 119529-119601 GT AGG (GCA) AG 119724-119881 AC GAA -recovered pasa_asmbl_2940.p1, terminal, 119724, 119881 -recovered pasa_asmbl_2940.p1, internal, 118134, 118229 -recovered pasa_asmbl_2940.p1, internal, 119529, 119601 Valid prediction for snap_scaffold_10-snap.311-T1 Valid prediction for HiQ_model.g16074.t1 Valid prediction for GlimmerHMM_glimmerT_24103-T1 Valid prediction for Augustus_model.g16069.t1 Valid prediction for snap_scaffold_10-snap.285-T1 Valid prediction for GlimmerHMM_glimmerT_24111-T1 Valid prediction for Augustus_model.g16075.t1 Valid prediction for GlimmerHMM_glimmerT_24114-T1 Valid prediction for snap_scaffold_10-snap.294-T1 Valid prediction for GlimmerHMM_glimmerT_24115-T1 Valid prediction for GlimmerHMM_glimmerT_24102-T1 Valid prediction for GlimmerHMM_glimmerT_24105-T1 Valid prediction for Augustus_model.g16083.t1 Valid prediction for GlimmerHMM_glimmerT_24118-T1 Couldn't classify 156014, 156053 Sorry, prediction pasa_asmbl_2943.p1 fails validation. (GAA) GG 156014-156053 GT AGG (GAT) AG 156342-156607 GT AGG (TCC) AG 156725-156900 GT AGG (TAA) AG 157047-157174 GT AAG (GTG) AG 157328-157572 AA GAA -recovered pasa_asmbl_2943.p1, terminal, 157328, 157572 -recovered pasa_asmbl_2943.p1, internal, 156342, 156607 -recovered pasa_asmbl_2943.p1, internal, 156725, 156900 -recovered pasa_asmbl_2943.p1, internal, 157047, 157174 Valid prediction for snap_scaffold_10-snap.287-T1 Valid prediction for snap_scaffold_10-snap.312-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_10-snap.284-T1 Valid prediction for snap_scaffold_10-snap.313-T1 Valid prediction for HiQ_model.g16076.t1 Valid prediction for HiQ_model.g16078.t1 Valid prediction for snap_scaffold_10-snap.290-T1 Valid prediction for snap_scaffold_10-snap.300-T1 Valid prediction for GlimmerHMM_glimmerT_24104-T1 Valid prediction for GlimmerHMM_glimmerT_24100-T1 Valid prediction for GlimmerHMM_glimmerT_24109-T1 Valid prediction for GlimmerHMM_glimmerT_24116-T1 Valid prediction for snap_scaffold_10-snap.316-T1 Valid prediction for GlimmerHMM_glimmerT_24124-T1 Valid prediction for snap_scaffold_10-snap.309-T1 Couldn't classify 7259, 7440 Sorry, prediction pasa_asmbl_4061.p1 fails validation. (GAA) AG 7259-7440 GT ACG (CAT) AG 7617-7767 GT CTG (GGG) AG 7974-8153 GT TGG (GGT) AG 8341-8533 GT GGG (GTA) AG 8664-8731 AA AAA -recovered pasa_asmbl_4061.p1, terminal, 8664, 8731 -recovered pasa_asmbl_4061.p1, internal, 7259, 7440 -recovered pasa_asmbl_4061.p1, internal, 7617, 7767 -recovered pasa_asmbl_4061.p1, internal, 7974, 8153 -recovered pasa_asmbl_4061.p1, internal, 8341, 8533 Valid prediction for GlimmerHMM_glimmerT_24120-T1 Valid prediction for snap_scaffold_10-snap.302-T1 Valid prediction for Augustus_model.g16082.t1 Valid prediction for snap_scaffold_10-snap.305-T1 Valid prediction for snap_scaffold_10-snap.297-T1 Valid prediction for GlimmerHMM_glimmerT_24101-T1 Valid prediction for snap_scaffold_10-snap.306-T1 Valid prediction for snap_scaffold_10-snap.301-T1 Valid prediction for CodingQuarry_transcript_5282-T1 Valid prediction for snap_scaffold_10-snap.308-T1 Valid prediction for pasa_asmbl_4054.p1 Valid prediction for GlimmerHMM_glimmerT_24117-T1 Valid prediction for GlimmerHMM_glimmerT_24113-T1 Valid prediction for pasa_asmbl_4052.p1 Valid prediction for GlimmerHMM_glimmerT_24107-T1 Valid prediction for snap_scaffold_10-snap.293-T1 Valid prediction for snap_scaffold_10-snap.295-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7452, rend_intergenic: 5498 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 32642, rend_intergenic: 29456 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40005, rend_intergenic: 37104 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 42205, rend_intergenic: 40172 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 47058, rend_intergenic: 42569 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 68212, rend_intergenic: 65278 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 72318, rend_intergenic: 70673 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 145617, rend_intergenic: 136136 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 153255, rend_intergenic: 147617 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 167938 -exon list size: 274 building trellis 0.4 0.7 1.1 1.4 1.8 2.2 2.5 2.9 3.3 3.6 4.0 4.3 4.7 5.1 5.4 5.8 6.2 6.5 6.9 7.2 7.6 8.0 8.3 8.7 9.1 9.4 9.8 10.1 10.5 10.9 11.2 11.6 12.0 12.3 12.7 13.0 13.4 13.8 14.1 14.5 14.9 15.2 15.6 15.9 16.3 16.7 17.0 17.4 17.8 18.1 18.5 18.8 19.2 19.6 19.9 20.3 20.7 21.0 21.4 21.7 22.1 22.5 22.8 23.2 23.6 23.9 24.3 24.6 25.0 25.4 25.7 26.1 26.4 26.8 27.2 27.5 27.9 28.3 28.6 29.0 29.3 29.7 30.1 30.4 30.8 31.2 31.5 31.9 32.2 32.6 33.0 33.3 33.7 34.1 34.4 34.8 35.1 35.5 35.9 36.2 36.6 37.0 37.3 37.7 38.0 38.4 38.8 39.1 39.5 39.9 40.2 40.6 40.9 41.3 41.7 42.0 42.4 42.8 43.1 43.5 43.8 44.2 44.6 44.9 45.3 45.7 46.0 46.4 46.7 47.1 47.5 47.8 48.2 48.6 48.9 49.3 49.6 50.0 50.4 50.7 51.1 51.4 51.8 52.2 52.5 52.9 53.3 53.6 54.0 54.3 54.7 55.1 55.4 55.8 56.2 56.5 56.9 57.2 57.6 58.0 58.3 58.7 59.1 59.4 59.8 60.1 60.5 60.9 61.2 61.6 62.0 62.3 62.7 63.0 63.4 63.8 64.1 64.5 64.9 65.2 65.6 65.9 66.3 66.7 67.0 67.4 67.8 68.1 68.5 68.8 69.2 69.6 69.9 70.3 70.7 71.0 71.4 71.7 72.1 72.5 72.8 73.2 73.6 73.9 74.3 74.6 75.0 75.4 75.7 76.1 76.4 76.8 77.2 77.5 77.9 78.3 78.6 79.0 79.3 79.7 80.1 80.4 80.8 81.2 81.5 81.9 82.2 82.6 83.0 83.3 83.7 84.1 84.4 84.8 85.1 85.5 85.9 86.2 86.6 87.0 87.3 87.7 88.0 88.4 88.8 89.1 89.5 89.9 90.2 90.6 90.9 91.3 91.7 92.0 92.4 92.8 93.1 93.5 93.8 94.2 94.6 94.9 95.3 95.7 96.0 96.4 96.7 97.1 97.5 97.8 98.2 98.6 98.9 99.3 99.6 -found 28 predictions from path traversal Error with prediction: snap lend_intergenic: 7452, rend_intergenic: 5498 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 32642, rend_intergenic: 29456 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40005, rend_intergenic: 37104 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 42205, rend_intergenic: 40172 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 47058, rend_intergenic: 42569 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 68212, rend_intergenic: 65278 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 72318, rend_intergenic: 70673 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 145617, rend_intergenic: 136136 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 153255, rend_intergenic: 147617 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 17 predictions persist after filtering for low support