-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_10/scaffold_10_12274317-12460673

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g16996.t1
Valid prediction for GlimmerHMM_glimmerT_25566-T1
Valid prediction for snap_scaffold_10-snap.2412-T1
Valid prediction for snap_scaffold_10-snap.2431-T1
Valid prediction for Augustus_model.g16993.t1
Valid prediction for snap_scaffold_10-snap.2400-T1
Valid prediction for snap_scaffold_10-snap.2399-T1
Valid prediction for snap_scaffold_10-snap.2403-T1
Valid prediction for GlimmerHMM_glimmerT_25574-T1
Valid prediction for snap_scaffold_10-snap.2401-T1
Valid prediction for GlimmerHMM_glimmerT_25584-T1
Valid prediction for snap_scaffold_10-snap.2426-T1
Valid prediction for snap_scaffold_10-snap.2427-T1
Valid prediction for snap_scaffold_10-snap.2419-T1
Valid prediction for snap_scaffold_10-snap.2417-T1
Valid prediction for snap_scaffold_10-snap.2406-T1
Valid prediction for snap_scaffold_10-snap.2408-T1
Valid prediction for GlimmerHMM_glimmerT_25578-T1
Valid prediction for GlimmerHMM_glimmerT_25571-T1
Valid prediction for snap_scaffold_10-snap.2415-T1
Valid prediction for snap_scaffold_10-snap.2414-T1
Valid prediction for GlimmerHMM_glimmerT_25572-T1
Valid prediction for snap_scaffold_10-snap.2397-T1
Valid prediction for GlimmerHMM_glimmerT_25562-T1
Valid prediction for snap_scaffold_10-snap.2411-T1
Valid prediction for Augustus_model.g16995.t1
Valid prediction for GlimmerHMM_glimmerT_25582-T1
Valid prediction for snap_scaffold_10-snap.2421-T1
Valid prediction for snap_scaffold_10-snap.2424-T1
Valid prediction for GlimmerHMM_glimmerT_25568-T1
Valid prediction for GlimmerHMM_glimmerT_25576-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_25585-T1
Valid prediction for snap_scaffold_10-snap.2402-T1
Valid prediction for GlimmerHMM_glimmerT_25579-T1
Valid prediction for GlimmerHMM_glimmerT_25561-T1
Valid prediction for snap_scaffold_10-snap.2409-T1
Valid prediction for GlimmerHMM_glimmerT_25583-T1
Valid prediction for snap_scaffold_10-snap.2416-T1
Valid prediction for GlimmerHMM_glimmerT_25565-T1
Valid prediction for snap_scaffold_10-snap.2429-T1
Valid prediction for snap_scaffold_10-snap.2420-T1
Valid prediction for snap_scaffold_10-snap.2432-T1
Valid prediction for GlimmerHMM_glimmerT_25564-T1
Valid prediction for GlimmerHMM_glimmerT_25580-T1
Valid prediction for GlimmerHMM_glimmerT_25575-T1
Valid prediction for snap_scaffold_10-snap.2398-T1
Valid prediction for snap_scaffold_10-snap.2413-T1
Valid prediction for GlimmerHMM_glimmerT_25570-T1
Valid prediction for GlimmerHMM_glimmerT_25563-T1
Valid prediction for snap_scaffold_10-snap.2410-T1
Valid prediction for snap_scaffold_10-snap.2404-T1
Valid prediction for GlimmerHMM_glimmerT_25581-T1
Valid prediction for GlimmerHMM_glimmerT_25577-T1
Valid prediction for Augustus_model.g16994.t1
Valid prediction for GlimmerHMM_glimmerT_25569-T1
Valid prediction for snap_scaffold_10-snap.2418-T1
Valid prediction for snap_scaffold_10-snap.2407-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_25573-T1
Valid prediction for Augustus_model.g16997.t1
Valid prediction for snap_scaffold_10-snap.2428-T1
Valid prediction for snap_scaffold_10-snap.2430-T1
Valid prediction for GlimmerHMM_glimmerT_25567-T1
Valid prediction for snap_scaffold_10-snap.2422-T1
Valid prediction for snap_scaffold_10-snap.2423-T1
Valid prediction for snap_scaffold_10-snap.2425-T1
Valid prediction for snap_scaffold_10-snap.2405-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3719, rend_intergenic: 2021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17417, rend_intergenic: 4437  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28592, rend_intergenic: 20836  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41748, rend_intergenic: 33677  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48985, rend_intergenic: 42955  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54374, rend_intergenic: 53825  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58493, rend_intergenic: 54615  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64499, rend_intergenic: 58537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72255, rend_intergenic: 66312  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85730, rend_intergenic: 74521  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91606, rend_intergenic: 87136  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101978, rend_intergenic: 92572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111203, rend_intergenic: 102195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120388, rend_intergenic: 111213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126916, rend_intergenic: 120748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155694, rend_intergenic: 146950  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162366, rend_intergenic: 155838  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170651, rend_intergenic: 164150  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174944, rend_intergenic: 171848  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 123784, rend_intergenic: 123781  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 186357
-exon list size: 247


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.8    
3.2    
3.6    
4.0    
4.4    
4.8    
5.2    
5.6    
6.0    
6.4    
6.8    
7.2    
7.6    
8.0    
8.4    
8.8    
9.2    
9.6    
10.0    
10.4    
10.8    
11.2    
11.6    
12.0    
12.4    
12.9    
13.3    
13.7    
14.1    
14.5    
14.9    
15.3    
15.7    
16.1    
16.5    
16.9    
17.3    
17.7    
18.1    
18.5    
18.9    
19.3    
19.7    
20.1    
20.5    
20.9    
21.3    
21.7    
22.1    
22.5    
22.9    
23.3    
23.7    
24.1    
24.5    
24.9    
25.3    
25.7    
26.1    
26.5    
26.9    
27.3    
27.7    
28.1    
28.5    
28.9    
29.3    
29.7    
30.1    
30.5    
30.9    
31.3    
31.7    
32.1    
32.5    
32.9    
33.3    
33.7    
34.1    
34.5    
34.9    
35.3    
35.7    
36.1    
36.5    
36.9    
37.3    
37.8    
38.2    
38.6    
39.0    
39.4    
39.8    
40.2    
40.6    
41.0    
41.4    
41.8    
42.2    
42.6    
43.0    
43.4    
43.8    
44.2    
44.6    
45.0    
45.4    
45.8    
46.2    
46.6    
47.0    
47.4    
47.8    
48.2    
48.6    
49.0    
49.4    
49.8    
50.2    
50.6    
51.0    
51.4    
51.8    
52.2    
52.6    
53.0    
53.4    
53.8    
54.2    
54.6    
55.0    
55.4    
55.8    
56.2    
56.6    
57.0    
57.4    
57.8    
58.2    
58.6    
59.0    
59.4    
59.8    
60.2    
60.6    
61.0    
61.4    
61.8    
62.2    
62.7    
63.1    
63.5    
63.9    
64.3    
64.7    
65.1    
65.5    
65.9    
66.3    
66.7    
67.1    
67.5    
67.9    
68.3    
68.7    
69.1    
69.5    
69.9    
70.3    
70.7    
71.1    
71.5    
71.9    
72.3    
72.7    
73.1    
73.5    
73.9    
74.3    
74.7    
75.1    
75.5    
75.9    
76.3    
76.7    
77.1    
77.5    
77.9    
78.3    
78.7    
79.1    
79.5    
79.9    
80.3    
80.7    
81.1    
81.5    
81.9    
82.3    
82.7    
83.1    
83.5    
83.9    
84.3    
84.7    
85.1    
85.5    
85.9    
86.3    
86.7    
87.1    
87.6    
88.0    
88.4    
88.8    
89.2    
89.6    
90.0    
90.4    
90.8    
91.2    
91.6    
92.0    
92.4    
92.8    
93.2    
93.6    
94.0    
94.4    
94.8    
95.2    
95.6    
96.0    
96.4    
96.8    
97.2    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 3719, rend_intergenic: 2021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17417, rend_intergenic: 4437  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28592, rend_intergenic: 20836  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41748, rend_intergenic: 33677  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48985, rend_intergenic: 42955  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54374, rend_intergenic: 53825  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58493, rend_intergenic: 54615  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64499, rend_intergenic: 58537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72255, rend_intergenic: 66312  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85730, rend_intergenic: 74521  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91606, rend_intergenic: 87136  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101978, rend_intergenic: 92572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111203, rend_intergenic: 102195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120388, rend_intergenic: 111213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126916, rend_intergenic: 120748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155694, rend_intergenic: 146950  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162366, rend_intergenic: 155838  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170651, rend_intergenic: 164150  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174944, rend_intergenic: 171848  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 123784, rend_intergenic: 123781  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 6 predictions persist after filtering for low support