-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1/scaffold_1_8190163-8394690

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_1160-T1
Valid prediction for snap_scaffold_1-snap.1466-T1
Valid prediction for GlimmerHMM_glimmerT_1157-T1
Valid prediction for snap_scaffold_1-snap.1485-T1
Valid prediction for snap_scaffold_1-snap.1475-T1
Valid prediction for Augustus_model.g865.t1
Valid prediction for Augustus_model.g861.t1
Valid prediction for snap_scaffold_1-snap.1460-T1
Valid prediction for snap_scaffold_1-snap.1455-T1
Valid prediction for snap_scaffold_1-snap.1478-T1
Valid prediction for snap_scaffold_1-snap.1473-T1
Valid prediction for snap_scaffold_1-snap.1446-T1
Valid prediction for snap_scaffold_1-snap.1489-T1
Valid prediction for snap_scaffold_1-snap.1462-T1
Valid prediction for GlimmerHMM_glimmerT_1167-T1
Valid prediction for snap_scaffold_1-snap.1458-T1
Valid prediction for GlimmerHMM_glimmerT_1147-T1
Valid prediction for GlimmerHMM_glimmerT_1164-T1
Valid prediction for Augustus_model.g854.t1
Valid prediction for Augustus_model.g864.t1
Valid prediction for GlimmerHMM_glimmerT_1150-T1
Valid prediction for GlimmerHMM_glimmerT_1155-T1
Valid prediction for snap_scaffold_1-snap.1480-T1
Valid prediction for snap_scaffold_1-snap.1449-T1
Valid prediction for snap_scaffold_1-snap.1452-T1
Valid prediction for GlimmerHMM_glimmerT_1165-T1
Valid prediction for GlimmerHMM_glimmerT_1162-T1
Valid prediction for GlimmerHMM_glimmerT_1168-T1
Valid prediction for snap_scaffold_1-snap.1451-T1
Valid prediction for GlimmerHMM_glimmerT_1159-T1
Valid prediction for snap_scaffold_1-snap.1469-T1
Valid prediction for GlimmerHMM_glimmerT_1154-T1
Valid prediction for snap_scaffold_1-snap.1457-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_1-snap.1481-T1
Valid prediction for GlimmerHMM_glimmerT_1163-T1
Valid prediction for GlimmerHMM_glimmerT_1145-T1
Valid prediction for snap_scaffold_1-snap.1468-T1
Valid prediction for snap_scaffold_1-snap.1459-T1
Valid prediction for snap_scaffold_1-snap.1467-T1
Valid prediction for snap_scaffold_1-snap.1484-T1
Valid prediction for snap_scaffold_1-snap.1454-T1
Valid prediction for GlimmerHMM_glimmerT_1143-T1
Valid prediction for snap_scaffold_1-snap.1447-T1
Valid prediction for snap_scaffold_1-snap.1477-T1
Valid prediction for GlimmerHMM_glimmerT_1140-T1
Valid prediction for GlimmerHMM_glimmerT_1146-T1
Valid prediction for snap_scaffold_1-snap.1487-T1
Valid prediction for Augustus_model.g862.t1
Valid prediction for Augustus_model.g850.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_1158-T1
Valid prediction for GlimmerHMM_glimmerT_1156-T1
Valid prediction for Augustus_model.g863.t1
Valid prediction for GlimmerHMM_glimmerT_1149-T1
Valid prediction for GlimmerHMM_glimmerT_1141-T1
Valid prediction for GlimmerHMM_glimmerT_1166-T1
Valid prediction for snap_scaffold_1-snap.1483-T1
Valid prediction for GlimmerHMM_glimmerT_1139-T1
Valid prediction for snap_scaffold_1-snap.1486-T1
Valid prediction for GlimmerHMM_glimmerT_1152-T1
Valid prediction for snap_scaffold_1-snap.1453-T1
Valid prediction for snap_scaffold_1-snap.1461-T1
Valid prediction for snap_scaffold_1-snap.1450-T1
Valid prediction for Augustus_model.g858.t1
Valid prediction for snap_scaffold_1-snap.1488-T1
Valid prediction for GlimmerHMM_glimmerT_1142-T1
Valid prediction for snap_scaffold_1-snap.1463-T1
Valid prediction for snap_scaffold_1-snap.1482-T1
Valid prediction for snap_scaffold_1-snap.1445-T1
Valid prediction for snap_scaffold_1-snap.1471-T1
Valid prediction for snap_scaffold_1-snap.1465-T1
Valid prediction for Augustus_model.g851.t1
Valid prediction for GlimmerHMM_glimmerT_1148-T1
Valid prediction for snap_scaffold_1-snap.1464-T1
Valid prediction for snap_scaffold_1-snap.1470-T1
Valid prediction for Augustus_model.g852.t1
Valid prediction for snap_scaffold_1-snap.1456-T1
Valid prediction for GlimmerHMM_glimmerT_1151-T1
Valid prediction for Augustus_model.g855.t1
Valid prediction for snap_scaffold_1-snap.1476-T1
Valid prediction for snap_scaffold_1-snap.1444-T1
Valid prediction for Augustus_model.g857.t1
Valid prediction for Augustus_model.g853.t1
Valid prediction for GlimmerHMM_glimmerT_1153-T1
Valid prediction for GlimmerHMM_glimmerT_1161-T1
Valid prediction for snap_scaffold_1-snap.1474-T1
Valid prediction for Augustus_model.g859.t1
Valid prediction for snap_scaffold_1-snap.1472-T1
Valid prediction for GlimmerHMM_glimmerT_1144-T1
Valid prediction for snap_scaffold_1-snap.1479-T1
Valid prediction for Augustus_model.g856.t1
Valid prediction for snap_scaffold_1-snap.1448-T1
Valid prediction for Augustus_model.g860.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 23204, rend_intergenic: 20230  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39162, rend_intergenic: 26760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50580, rend_intergenic: 41160  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51306, rend_intergenic: 50769  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74162, rend_intergenic: 51982  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75479, rend_intergenic: 74801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85083, rend_intergenic: 75964  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86712, rend_intergenic: 85253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106358, rend_intergenic: 94133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115542, rend_intergenic: 108558  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121214, rend_intergenic: 116126  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129997, rend_intergenic: 123394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134631, rend_intergenic: 130164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158833, rend_intergenic: 152234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202903, rend_intergenic: 199225  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 204528
-exon list size: 342


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.7    
2.0    
2.3    
2.6    
2.9    
3.2    
3.5    
3.8    
4.1    
4.4    
4.7    
4.9    
5.2    
5.5    
5.8    
6.1    
6.4    
6.7    
7.0    
7.3    
7.6    
7.8    
8.1    
8.4    
8.7    
9.0    
9.3    
9.6    
9.9    
10.2    
10.5    
10.8    
11.0    
11.3    
11.6    
11.9    
12.2    
12.5    
12.8    
13.1    
13.4    
13.7    
14.0    
14.2    
14.5    
14.8    
15.1    
15.4    
15.7    
16.0    
16.3    
16.6    
16.9    
17.2    
17.4    
17.7    
18.0    
18.3    
18.6    
18.9    
19.2    
19.5    
19.8    
20.1    
20.3    
20.6    
20.9    
21.2    
21.5    
21.8    
22.1    
22.4    
22.7    
23.0    
23.3    
23.5    
23.8    
24.1    
24.4    
24.7    
25.0    
25.3    
25.6    
25.9    
26.2    
26.5    
26.7    
27.0    
27.3    
27.6    
27.9    
28.2    
28.5    
28.8    
29.1    
29.4    
29.7    
29.9    
30.2    
30.5    
30.8    
31.1    
31.4    
31.7    
32.0    
32.3    
32.6    
32.8    
33.1    
33.4    
33.7    
34.0    
34.3    
34.6    
34.9    
35.2    
35.5    
35.8    
36.0    
36.3    
36.6    
36.9    
37.2    
37.5    
37.8    
38.1    
38.4    
38.7    
39.0    
39.2    
39.5    
39.8    
40.1    
40.4    
40.7    
41.0    
41.3    
41.6    
41.9    
42.2    
42.4    
42.7    
43.0    
43.3    
43.6    
43.9    
44.2    
44.5    
44.8    
45.1    
45.3    
45.6    
45.9    
46.2    
46.5    
46.8    
47.1    
47.4    
47.7    
48.0    
48.3    
48.5    
48.8    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.2    
51.5    
51.7    
52.0    
52.3    
52.6    
52.9    
53.2    
53.5    
53.8    
54.1    
54.4    
54.7    
54.9    
55.2    
55.5    
55.8    
56.1    
56.4    
56.7    
57.0    
57.3    
57.6    
57.8    
58.1    
58.4    
58.7    
59.0    
59.3    
59.6    
59.9    
60.2    
60.5    
60.8    
61.0    
61.3    
61.6    
61.9    
62.2    
62.5    
62.8    
63.1    
63.4    
63.7    
64.0    
64.2    
64.5    
64.8    
65.1    
65.4    
65.7    
66.0    
66.3    
66.6    
66.9    
67.2    
67.4    
67.7    
68.0    
68.3    
68.6    
68.9    
69.2    
69.5    
69.8    
70.1    
70.3    
70.6    
70.9    
71.2    
71.5    
71.8    
72.1    
72.4    
72.7    
73.0    
73.3    
73.5    
73.8    
74.1    
74.4    
74.7    
75.0    
75.3    
75.6    
75.9    
76.2    
76.5    
76.7    
77.0    
77.3    
77.6    
77.9    
78.2    
78.5    
78.8    
79.1    
79.4    
79.7    
79.9    
80.2    
80.5    
80.8    
81.1    
81.4    
81.7    
82.0    
82.3    
82.6    
82.8    
83.1    
83.4    
83.7    
84.0    
84.3    
84.6    
84.9    
85.2    
85.5    
85.8    
86.0    
86.3    
86.6    
86.9    
87.2    
87.5    
87.8    
88.1    
88.4    
88.7    
89.0    
89.2    
89.5    
89.8    
90.1    
90.4    
90.7    
91.0    
91.3    
91.6    
91.9    
92.2    
92.4    
92.7    
93.0    
93.3    
93.6    
93.9    
94.2    
94.5    
94.8    
95.1    
95.3    
95.6    
95.9    
96.2    
96.5    
96.8    
97.1    
97.4    
97.7    
98.0    
98.3    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 23204, rend_intergenic: 20230  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39162, rend_intergenic: 26760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50580, rend_intergenic: 41160  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51306, rend_intergenic: 50769  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74162, rend_intergenic: 51982  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75479, rend_intergenic: 74801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85083, rend_intergenic: 75964  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86712, rend_intergenic: 85253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106358, rend_intergenic: 94133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115542, rend_intergenic: 108558  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121214, rend_intergenic: 116126  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129997, rend_intergenic: 123394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134631, rend_intergenic: 130164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158833, rend_intergenic: 152234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202903, rend_intergenic: 199225  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 13565
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support