-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1/scaffold_1_7793793-8023207

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g821.t1
Valid prediction for Augustus_model.g817.t1
Valid prediction for GlimmerHMM_glimmerT_1096-T1
Valid prediction for CodingQuarry_transcript_2702-T1
Valid prediction for Augustus_model.g826.t1
Valid prediction for snap_scaffold_1-snap.1376-T1
Valid prediction for pasa_asmbl_1925.p1
Valid prediction for GlimmerHMM_glimmerT_1102-T1
Valid prediction for GlimmerHMM_glimmerT_1097-T1
Valid prediction for GlimmerHMM_glimmerT_1100-T1
Valid prediction for Augustus_model.g818.t1
Valid prediction for snap_scaffold_1-snap.1373-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_1-snap.1396-T1
Valid prediction for GlimmerHMM_glimmerT_1104-T1
Valid prediction for GlimmerHMM_glimmerT_1098-T1
Valid prediction for snap_scaffold_1-snap.1388-T1
Valid prediction for Augustus_model.g824.t1
Valid prediction for Augustus_model.g819.t1
Valid prediction for snap_scaffold_1-snap.1387-T1
Valid prediction for Augustus_model.g830.t1
Valid prediction for snap_scaffold_1-snap.1378-T1
Valid prediction for snap_scaffold_1-snap.1402-T1
Valid prediction for snap_scaffold_1-snap.1399-T1
Valid prediction for GlimmerHMM_glimmerT_1091-T1
Valid prediction for GlimmerHMM_glimmerT_1106-T1
Valid prediction for snap_scaffold_1-snap.1394-T1
Valid prediction for Augustus_model.g825.t1
Valid prediction for snap_scaffold_1-snap.1398-T1
Valid prediction for GlimmerHMM_glimmerT_1092-T1
Valid prediction for snap_scaffold_1-snap.1395-T1
Valid prediction for snap_scaffold_1-snap.1406-T1
Valid prediction for snap_scaffold_1-snap.1401-T1
Valid prediction for snap_scaffold_1-snap.1379-T1
Valid prediction for snap_scaffold_1-snap.1385-T1
Valid prediction for Augustus_model.g831.t1
Valid prediction for Augustus_model.g829.t1
Valid prediction for GlimmerHMM_glimmerT_1095-T1
Valid prediction for GlimmerHMM_glimmerT_1108-T1
Valid prediction for GlimmerHMM_glimmerT_1099-T1
Valid prediction for Augustus_model.g823.t1
Valid prediction for GlimmerHMM_glimmerT_1093-T1
Valid prediction for snap_scaffold_1-snap.1409-T1
Valid prediction for snap_scaffold_1-snap.1403-T1
Valid prediction for snap_scaffold_1-snap.1374-T1
Valid prediction for snap_scaffold_1-snap.1383-T1
Valid prediction for Augustus_model.g828.t1
Valid prediction for snap_scaffold_1-snap.1410-T1
Valid prediction for snap_scaffold_1-snap.1412-T1
Valid prediction for snap_scaffold_1-snap.1407-T1
Valid prediction for Augustus_model.g820.t1
Valid prediction for snap_scaffold_1-snap.1392-T1
Valid prediction for snap_scaffold_1-snap.1405-T1
Valid prediction for Augustus_model.g827.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1-snap.1380-T1
Valid prediction for Augustus_model.g816.t1
Valid prediction for snap_scaffold_1-snap.1397-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_1-snap.1372-T1
Valid prediction for GlimmerHMM_glimmerT_1109-T1
Valid prediction for snap_scaffold_1-snap.1411-T1
Valid prediction for snap_scaffold_1-snap.1408-T1
Valid prediction for snap_scaffold_1-snap.1391-T1
Valid prediction for HiQ_model.g815.t1
Valid prediction for snap_scaffold_1-snap.1404-T1
Valid prediction for GlimmerHMM_glimmerT_1094-T1
Valid prediction for snap_scaffold_1-snap.1377-T1
Valid prediction for snap_scaffold_1-snap.1390-T1
Valid prediction for snap_scaffold_1-snap.1375-T1
Valid prediction for GlimmerHMM_glimmerT_1107-T1
Valid prediction for snap_scaffold_1-snap.1384-T1
Valid prediction for snap_scaffold_1-snap.1400-T1
Valid prediction for snap_scaffold_1-snap.1386-T1
Valid prediction for Augustus_model.g822.t1
Valid prediction for GlimmerHMM_glimmerT_1105-T1
Valid prediction for snap_scaffold_1-snap.1393-T1
Valid prediction for snap_scaffold_1-snap.1389-T1
Valid prediction for GlimmerHMM_glimmerT_1103-T1
Valid prediction for snap_scaffold_1-snap.1382-T1
Valid prediction for Augustus_model.g832.t1
Valid prediction for snap_scaffold_1-snap.1381-T1
Valid prediction for pasa_asmbl_441.p1
Valid prediction for CodingQuarry_transcript_2701-T1
Valid prediction for GlimmerHMM_glimmerT_1101-T1
Valid prediction for GlimmerHMM_glimmerT_1090-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8763, rend_intergenic: 5865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14047, rend_intergenic: 9781  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16008, rend_intergenic: 14772  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36607, rend_intergenic: 25557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41586, rend_intergenic: 36671  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62279, rend_intergenic: 61823  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68221, rend_intergenic: 64523  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90278, rend_intergenic: 80384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93197, rend_intergenic: 90279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103000, rend_intergenic: 94157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106512, rend_intergenic: 103210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117849, rend_intergenic: 111994  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119697, rend_intergenic: 117856  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132875, rend_intergenic: 128147  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166446, rend_intergenic: 165355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 229415
-exon list size: 335


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.1    
2.4    
2.7    
3.0    
3.3    
3.6    
3.9    
4.2    
4.5    
4.7    
5.0    
5.3    
5.6    
5.9    
6.2    
6.5    
6.8    
7.1    
7.4    
7.7    
8.0    
8.3    
8.6    
8.9    
9.2    
9.5    
9.8    
10.1    
10.4    
10.7    
11.0    
11.3    
11.6    
11.9    
12.2    
12.5    
12.8    
13.1    
13.4    
13.6    
13.9    
14.2    
14.5    
14.8    
15.1    
15.4    
15.7    
16.0    
16.3    
16.6    
16.9    
17.2    
17.5    
17.8    
18.1    
18.4    
18.7    
19.0    
19.3    
19.6    
19.9    
20.2    
20.5    
20.8    
21.1    
21.4    
21.7    
22.0    
22.3    
22.6    
22.8    
23.1    
23.4    
23.7    
24.0    
24.3    
24.6    
24.9    
25.2    
25.5    
25.8    
26.1    
26.4    
26.7    
27.0    
27.3    
27.6    
27.9    
28.2    
28.5    
28.8    
29.1    
29.4    
29.7    
30.0    
30.3    
30.6    
30.9    
31.2    
31.5    
31.8    
32.0    
32.3    
32.6    
32.9    
33.2    
33.5    
33.8    
34.1    
34.4    
34.7    
35.0    
35.3    
35.6    
35.9    
36.2    
36.5    
36.8    
37.1    
37.4    
37.7    
38.0    
38.3    
38.6    
38.9    
39.2    
39.5    
39.8    
40.1    
40.4    
40.7    
40.9    
41.2    
41.5    
41.8    
42.1    
42.4    
42.7    
43.0    
43.3    
43.6    
43.9    
44.2    
44.5    
44.8    
45.1    
45.4    
45.7    
46.0    
46.3    
46.6    
46.9    
47.2    
47.5    
47.8    
48.1    
48.4    
48.7    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.3    
51.6    
51.9    
52.2    
52.5    
52.8    
53.1    
53.4    
53.7    
54.0    
54.3    
54.6    
54.9    
55.2    
55.5    
55.8    
56.1    
56.4    
56.7    
57.0    
57.3    
57.6    
57.9    
58.2    
58.5    
58.8    
59.1    
59.3    
59.6    
59.9    
60.2    
60.5    
60.8    
61.1    
61.4    
61.7    
62.0    
62.3    
62.6    
62.9    
63.2    
63.5    
63.8    
64.1    
64.4    
64.7    
65.0    
65.3    
65.6    
65.9    
66.2    
66.5    
66.8    
67.1    
67.4    
67.7    
68.0    
68.2    
68.5    
68.8    
69.1    
69.4    
69.7    
70.0    
70.3    
70.6    
70.9    
71.2    
71.5    
71.8    
72.1    
72.4    
72.7    
73.0    
73.3    
73.6    
73.9    
74.2    
74.5    
74.8    
75.1    
75.4    
75.7    
76.0    
76.3    
76.6    
76.9    
77.2    
77.4    
77.7    
78.0    
78.3    
78.6    
78.9    
79.2    
79.5    
79.8    
80.1    
80.4    
80.7    
81.0    
81.3    
81.6    
81.9    
82.2    
82.5    
82.8    
83.1    
83.4    
83.7    
84.0    
84.3    
84.6    
84.9    
85.2    
85.5    
85.8    
86.1    
86.4    
86.6    
86.9    
87.2    
87.5    
87.8    
88.1    
88.4    
88.7    
89.0    
89.3    
89.6    
89.9    
90.2    
90.5    
90.8    
91.1    
91.4    
91.7    
92.0    
92.3    
92.6    
92.9    
93.2    
93.5    
93.8    
94.1    
94.4    
94.7    
95.0    
95.3    
95.5    
95.8    
96.1    
96.4    
96.7    
97.0    
97.3    
97.6    
97.9    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 8763, rend_intergenic: 5865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14047, rend_intergenic: 9781  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16008, rend_intergenic: 14772  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36607, rend_intergenic: 25557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41586, rend_intergenic: 36671  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62279, rend_intergenic: 61823  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68221, rend_intergenic: 64523  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90278, rend_intergenic: 80384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93197, rend_intergenic: 90279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103000, rend_intergenic: 94157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106512, rend_intergenic: 103210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117849, rend_intergenic: 111994  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119697, rend_intergenic: 117856  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132875, rend_intergenic: 128147  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166446, rend_intergenic: 165355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 210072 - 229415
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 210072 - 226469
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support