-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1/scaffold_1_6826191-7012113 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 180881, 181312 Sorry, prediction pasa_asmbl_1877.p2 fails validation. (CCG) CC 180881-181312 GA CCG Valid prediction for GlimmerHMM_glimmerT_945-T1 Valid prediction for snap_scaffold_1-snap.1163-T1 Valid prediction for CodingQuarry_transcript_2670-T1 Couldn't classify 14600, 14714 Sorry, prediction pasa_asmbl_2821.p1 fails validation. (AGG) AC 14600-14714 GT AGG (AGG) AG 14952-15064 GT AGG (AAC) AG 15559-15716 GT AGG (GGT) AG 15951-16047 GT AGG (GCA) AG 16376-16450 TG GAT add_exon() Sorry, pasa_asmbl_2821.p1 15559-15716-terminal-2 is invalid. -recovered pasa_asmbl_2821.p1, terminal, 15559, 15716 -recovered pasa_asmbl_2821.p1, terminal, 16376, 16450 -recovered pasa_asmbl_2821.p1, internal, 14952, 15064 -recovered pasa_asmbl_2821.p1, internal, 15559, 15716 -recovered pasa_asmbl_2821.p1, internal, 15951, 16047 Valid prediction for pasa_asmbl_1862.p1 Valid prediction for CodingQuarry_transcript_2675-T1 Valid prediction for snap_scaffold_1-snap.1177-T1 Valid prediction for Augustus_model.g717.t1 Valid prediction for GlimmerHMM_glimmerT_932-T1 Valid prediction for GlimmerHMM_glimmerT_929-T1 Valid prediction for GlimmerHMM_glimmerT_944-T1 Valid prediction for snap_scaffold_1-snap.1179-T1 Valid prediction for GlimmerHMM_glimmerT_939-T1 Valid prediction for CodingQuarry_transcript_2672-T1 Valid prediction for snap_scaffold_1-snap.1182-T1 Valid prediction for snap_scaffold_1-snap.1160-T1 Couldn't classify 119021, 119128 Sorry, prediction pasa_asmbl_1860.p1 fails validation. (CTT) GC 119021-119128 GT AGG (AGA) AG 119480-119560 GT AGG (TCG) AG 119675-119780 GT AGG (CTT) AG 120170-120249 GT AGG (GTT) AG 120378-120437 GT AGG (AGC) AG 120530-120585 GT AGG (GTG) AG 120937-121059 GT AGG (CTG) AG 121270-121365 GT CCG (GCC) AG 121885-121979 GT AGG (GCG) AG 122114-122179 GT AGG (GTG) AG 122305-122369 GT AGG (GGG) AG 122523-122612 GT TGG (GAG) AG 122711-122764 GT AGG (AGC) AG 122884-122993 GT AGG (ACA) AG 123078-123180 GT AGG (GAT) AG 123365-123439 GT TGG (ACC) AG 123561-123692 CC AAC -recovered pasa_asmbl_1860.p1, terminal, 123561, 123692 -recovered pasa_asmbl_1860.p1, internal, 119480, 119560 -recovered pasa_asmbl_1860.p1, internal, 119675, 119780 -recovered pasa_asmbl_1860.p1, internal, 120170, 120249 -recovered pasa_asmbl_1860.p1, internal, 120378, 120437 -recovered pasa_asmbl_1860.p1, internal, 120530, 120585 -recovered pasa_asmbl_1860.p1, internal, 120937, 121059 -recovered pasa_asmbl_1860.p1, internal, 121270, 121365 -recovered pasa_asmbl_1860.p1, internal, 121885, 121979 -recovered pasa_asmbl_1860.p1, internal, 122114, 122179 -recovered pasa_asmbl_1860.p1, internal, 122305, 122369 -recovered pasa_asmbl_1860.p1, internal, 122523, 122612 -recovered pasa_asmbl_1860.p1, internal, 122711, 122764 -recovered pasa_asmbl_1860.p1, internal, 122884, 122993 -recovered pasa_asmbl_1860.p1, internal, 123078, 123180 -recovered pasa_asmbl_1860.p1, internal, 123365, 123439 Valid prediction for GlimmerHMM_glimmerT_942-T1 Valid prediction for HiQ_model.g708.t1 Valid prediction for GlimmerHMM_glimmerT_954-T1 Valid prediction for snap_scaffold_1-snap.1165-T1 Valid prediction for snap_scaffold_1-snap.1155-T1 Valid prediction for snap_scaffold_1-snap.1162-T1 Valid prediction for snap_scaffold_1-snap.1181-T1 Couldn't classify 145721, 145928 Sorry, prediction pasa_asmbl_1869.p1 fails validation. (CTG) TC 145721-145928 GT AGG (CCA) AG 146305-146550 GT AGG (GAG) AG 146725-146896 GT GAG (AGC) AG 147100-147385 GT AGG (GTG) AG 147560-147859 GC GAG -recovered pasa_asmbl_1869.p1, terminal, 147560, 147859 -recovered pasa_asmbl_1869.p1, internal, 146305, 146550 -recovered pasa_asmbl_1869.p1, internal, 146725, 146896 -recovered pasa_asmbl_1869.p1, internal, 147100, 147385 -recovered pasa_asmbl_1869.p1, internal, 147560, 147859 Valid prediction for pasa_asmbl_1865.p1 Valid prediction for snap_scaffold_1-snap.1171-T1 Valid prediction for GlimmerHMM_glimmerT_951-T1 Valid prediction for snap_scaffold_1-snap.1148-T1 Valid prediction for HiQ_model.g716.t1 Valid prediction for GlimmerHMM_glimmerT_961-T1 Valid prediction for snap_scaffold_1-snap.1164-T1 Valid prediction for snap_scaffold_1-snap.1152-T1 Valid prediction for Augustus_model.g702.t1 Valid prediction for CodingQuarry_transcript_2674-T1 Valid prediction for snap_scaffold_1-snap.1169-T1 Valid prediction for GlimmerHMM_glimmerT_953-T1 Valid prediction for CodingQuarry_transcript_2669-T1 Couldn't classify 11904, 12113 Couldn't classify 12907, 12993 Sorry, prediction pasa_asmbl_2746.p1 fails validation. (GAA) AG 11904-12113 GT ATG (ATC) AG 12907-12993 AG ACA -recovered pasa_asmbl_2746.p1, internal, 11904, 12113 Valid prediction for HiQ_model.g714.t1 Valid prediction for snap_scaffold_1-snap.1187-T1 Valid prediction for GlimmerHMM_glimmerT_959-T1 Valid prediction for GlimmerHMM_glimmerT_948-T1 Valid prediction for snap_scaffold_1-snap.1167-T1 Couldn't classify 153890, 153968 Sorry, prediction pasa_asmbl_1874.p1 fails validation. (GTC) AT 153890-153968 GT AGG (ACT) AG 154078-154252 GT AAG (GCT) AG 154436-154472 GT GGG (TTC) AG 154587-154733 GT AGG (ATC) AG 155049-155099 GT TGG (GAT) AG 155272-155361 GT AGG (GAC) AG 155484-155636 CC AAC -recovered pasa_asmbl_1874.p1, terminal, 155484, 155636 -recovered pasa_asmbl_1874.p1, internal, 154078, 154252 -recovered pasa_asmbl_1874.p1, internal, 154436, 154472 -recovered pasa_asmbl_1874.p1, internal, 154587, 154733 -recovered pasa_asmbl_1874.p1, internal, 155049, 155099 -recovered pasa_asmbl_1874.p1, internal, 155272, 155361 Valid prediction for snap_scaffold_1-snap.1173-T1 Valid prediction for GlimmerHMM_glimmerT_957-T1 Couldn't classify 172720, 172780 Couldn't classify 179821, 179903 Sorry, prediction pasa_asmbl_1876.p1 fails validation. (GTA) AG 172720-172780 GT CAG (ACT) AG 174021-174146 GT AGG (GTA) AG 176985-177103 GT TGG (AGG) AG 177390-177510 GT CTG (CCT) AG 177750-177794 GT ATG (TCT) AG 177963-178114 GT CTG (GAA) AG 179054-179119 GT AGG (CTG) AG 179217-179271 GT AGG (TCC) AG 179499-179609 GT AGG (AGA) AG 179821-179903 AG CCA add_exon() Sorry, pasa_asmbl_1876.p1 174021-174146-terminal-1 is invalid. -recovered pasa_asmbl_1876.p1, terminal, 174021, 174146 -recovered pasa_asmbl_1876.p1, internal, 172720, 172780 -recovered pasa_asmbl_1876.p1, internal, 174021, 174146 -recovered pasa_asmbl_1876.p1, internal, 176985, 177103 -recovered pasa_asmbl_1876.p1, internal, 177390, 177510 -recovered pasa_asmbl_1876.p1, internal, 177750, 177794 -recovered pasa_asmbl_1876.p1, internal, 177963, 178114 -recovered pasa_asmbl_1876.p1, internal, 179054, 179119 -recovered pasa_asmbl_1876.p1, internal, 179217, 179271 -recovered pasa_asmbl_1876.p1, internal, 179499, 179609 Valid prediction for Augustus_model.g705.t1 Valid prediction for snap_scaffold_1-snap.1149-T1 Valid prediction for GlimmerHMM_glimmerT_956-T1 Valid prediction for HiQ_model.g711.t1 Valid prediction for CodingQuarry_transcript_2671-T1 Valid prediction for Augustus_model.g719.t1 Valid prediction for GlimmerHMM_glimmerT_946-T1 Valid prediction for GlimmerHMM_glimmerT_952-T1 Valid prediction for Augustus_model.g715.t1 Valid prediction for snap_scaffold_1-snap.1157-T1 Valid prediction for HiQ_model.g709.t1 Valid prediction for pasa_asmbl_1864.p1 Valid prediction for Augustus_model.g698.t1 Valid prediction for snap_scaffold_1-snap.1178-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1-snap.1151-T1 Valid prediction for GlimmerHMM_glimmerT_928-T1 Valid prediction for HiQ_model.g712.t1 Valid prediction for Augustus_model.g696.t1 Valid prediction for HiQ_model.g710.t1 Valid prediction for snap_scaffold_1-snap.1186-T1 Couldn't classify 164671, 164894 Sorry, prediction Augustus_model.g700.t1 fails validation. (ATG) AG 133514-133613 GT AGG (ACA) AG 134261-134506 GT AGG (GTC) AG 134618-134715 GT AGG (GTG) AG 135239-135386 GT AGG (GTA) AG 137593-137711 GT AGG (GTG) AG 137839-137913 GT AGG (GTG) AG 138007-138169 GT AGG (GGG) AG 138423-138620 GT TGG (CCT) AG 139920-140057 GT GAG (AAG) AG 141139-141265 GT AGG (TCC) AG 142540-142676 GT GGG (GCT) AG 142815-143008 GT AGG (GTC) AG 143286-143399 GT AGG (AAT) AG 143516-143659 GT GGG (GTA) AG 145019-145142 GT GGG (GAG) AG 145491-145651 GT AGG (GAG) AG 145779-145869 GT AGG (GTG) AG 146032-146201 GT AGG (GGT) AG 146326-146443 GT CAG (GAG) AG 146651-146913 GT AGG (GTG) AG 147105-147708 GT AGG (CCG) AG 148332-148505 GT TGG (GTC) AG 148650-148812 GT AGG (AGG) AG 149084-149244 GT TGG (GCA) AG 150076-150243 GT AGG (GTT) AG 150395-150518 GT AGG (CCC) AG 150626-150779 GT CTG (GAC) AG 151505-151694 GT CGG (GCC) AG 151775-152022 GT TGG (GCG) AG 152213-152293 GT GGG (GGA) AG 153200-153337 GT GCG (GTG) AG 154028-154130 GT AGG (GCG) AG 154339-154479 GT TGG (AGA) AG 155881-156009 GT GGG (GTG) AG 156157-156330 GT TGG (AAG) AG 156893-157051 GT AGG (GTA) AG 157386-157589 GT AGG (GGT) AG 158671-158823 GT AGG (GAA) AG 158973-159095 GT TGG (TGA) AG 160629-160814 GT GGG (AGA) AG 161088-161354 GT AGG (CTG) AG 161441-161578 GT TGG (GTG) AG 161729-161844 GT AGG (GAG) AG 163192-163324 GT AGG (ACA) AG 163367-163543 GT AGG (GTA) AG 164671-164894 AA AGA -recovered Augustus_model.g700.t1, initial, 133514, 133613 add_exon() Sorry, Augustus_model.g700.t1 156893-157051-terminal-1 is invalid. -recovered Augustus_model.g700.t1, terminal, 156893, 157051 -recovered Augustus_model.g700.t1, internal, 133514, 133613 -recovered Augustus_model.g700.t1, internal, 134261, 134506 -recovered Augustus_model.g700.t1, internal, 134618, 134715 -recovered Augustus_model.g700.t1, internal, 135239, 135386 -recovered Augustus_model.g700.t1, internal, 137593, 137711 -recovered Augustus_model.g700.t1, internal, 137839, 137913 -recovered Augustus_model.g700.t1, internal, 138007, 138169 -recovered Augustus_model.g700.t1, internal, 138423, 138620 -recovered Augustus_model.g700.t1, internal, 139920, 140057 -recovered Augustus_model.g700.t1, internal, 141139, 141265 -recovered Augustus_model.g700.t1, internal, 142540, 142676 -recovered Augustus_model.g700.t1, internal, 142815, 143008 -recovered Augustus_model.g700.t1, internal, 143286, 143399 -recovered Augustus_model.g700.t1, internal, 143516, 143659 -recovered Augustus_model.g700.t1, internal, 145019, 145142 -recovered Augustus_model.g700.t1, internal, 145491, 145651 -recovered Augustus_model.g700.t1, internal, 145779, 145869 -recovered Augustus_model.g700.t1, internal, 146032, 146201 -recovered Augustus_model.g700.t1, internal, 146326, 146443 -recovered Augustus_model.g700.t1, internal, 146651, 146913 -recovered Augustus_model.g700.t1, internal, 147105, 147708 -recovered Augustus_model.g700.t1, internal, 148332, 148505 -recovered Augustus_model.g700.t1, internal, 148650, 148812 -recovered Augustus_model.g700.t1, internal, 149084, 149244 -recovered Augustus_model.g700.t1, internal, 150076, 150243 -recovered Augustus_model.g700.t1, internal, 150395, 150518 -recovered Augustus_model.g700.t1, internal, 150626, 150779 -recovered Augustus_model.g700.t1, internal, 151505, 151694 -recovered Augustus_model.g700.t1, internal, 151775, 152022 -recovered Augustus_model.g700.t1, internal, 152213, 152293 -recovered Augustus_model.g700.t1, internal, 153200, 153337 -recovered Augustus_model.g700.t1, internal, 154028, 154130 -recovered Augustus_model.g700.t1, internal, 154339, 154479 -recovered Augustus_model.g700.t1, internal, 155881, 156009 -recovered Augustus_model.g700.t1, internal, 156157, 156330 -recovered Augustus_model.g700.t1, internal, 156893, 157051 -recovered Augustus_model.g700.t1, internal, 157386, 157589 -recovered Augustus_model.g700.t1, internal, 158671, 158823 -recovered Augustus_model.g700.t1, internal, 158973, 159095 -recovered Augustus_model.g700.t1, internal, 160629, 160814 -recovered Augustus_model.g700.t1, internal, 161088, 161354 -recovered Augustus_model.g700.t1, internal, 161441, 161578 -recovered Augustus_model.g700.t1, internal, 161729, 161844 -recovered Augustus_model.g700.t1, internal, 163192, 163324 -recovered Augustus_model.g700.t1, internal, 163367, 163543 Valid prediction for Augustus_model.g703.t1 Valid prediction for snap_scaffold_1-snap.1156-T1 Valid prediction for Augustus_model.g704.t1 Valid prediction for GlimmerHMM_glimmerT_955-T1 Valid prediction for snap_scaffold_1-snap.1161-T1 Valid prediction for snap_scaffold_1-snap.1183-T1 Valid prediction for GlimmerHMM_glimmerT_941-T1 Valid prediction for snap_scaffold_1-snap.1154-T1 Couldn't classify 146749, 146913 Couldn't classify 147105, 147281 Sorry, prediction pasa_asmbl_393.p1 fails validation. (GCT) AG 146749-146913 GT AGG (GTG) AG 147105-147281 AC CCA -recovered pasa_asmbl_393.p1, internal, 146749, 146913 Couldn't classify 56578, 56679 Sorry, prediction pasa_asmbl_1258.p1 fails validation. (GAA) GT 56578-56679 GT AGG (GTG) AG 57182-57260 GT AGG (GTG) AG 57461-57903 TT GAT -recovered pasa_asmbl_1258.p1, terminal, 57461, 57903 -recovered pasa_asmbl_1258.p1, internal, 57182, 57260 Couldn't classify 165067, 165238 Sorry, prediction pasa_asmbl_1349.p1 fails validation. (GAG) CA 165067-165238 GT TGG (GTA) AG 165427-165614 TG AAT -recovered pasa_asmbl_1349.p1, terminal, 165427, 165614 Valid prediction for snap_scaffold_1-snap.1176-T1 Valid prediction for snap_scaffold_1-snap.1180-T1 Couldn't classify 135269, 135386 Couldn't classify 139920, 140026 Sorry, prediction pasa_asmbl_397.p1 fails validation. (AGT) CC 135269-135386 GT AGG (GTA) AG 137593-137711 GT AGG (GTG) AG 137839-137913 GT AGG (GTG) AG 138007-138169 GT AGG (GGG) AG 138423-138620 GT TGG (CCT) AG 139920-140026 GG GTG -recovered pasa_asmbl_397.p1, internal, 137593, 137711 -recovered pasa_asmbl_397.p1, internal, 137839, 137913 -recovered pasa_asmbl_397.p1, internal, 138007, 138169 -recovered pasa_asmbl_397.p1, internal, 138423, 138620 Valid prediction for GlimmerHMM_glimmerT_943-T1 Valid prediction for GlimmerHMM_glimmerT_935-T1 Valid prediction for GlimmerHMM_glimmerT_933-T1 Couldn't classify 145019, 145142 Couldn't classify 146032, 146192 Sorry, prediction pasa_asmbl_394.p1 fails validation. (GTA) AG 145019-145142 GT GGG (GAG) AG 145491-145651 GT AGG (GAG) AG 145779-145869 GT AGG (GTG) AG 146032-146192 AT CCA -recovered pasa_asmbl_394.p1, internal, 145019, 145142 -recovered pasa_asmbl_394.p1, internal, 145491, 145651 -recovered pasa_asmbl_394.p1, internal, 145779, 145869 Valid prediction for snap_scaffold_1-snap.1166-T1 Valid prediction for Augustus_model.g706.t1 Couldn't classify 164671, 164891 Sorry, prediction pasa_asmbl_392.p1 fails validation. (ATG) CT 163093-163324 GT AGG (ACA) AG 163367-163543 GT AGG (GTA) AG 164671-164891 AA GTA -recovered pasa_asmbl_392.p1, initial, 163093, 163324 -recovered pasa_asmbl_392.p1, internal, 163367, 163543 Valid prediction for snap_scaffold_1-snap.1159-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for Augustus_model.g699.t1 Valid prediction for GlimmerHMM_glimmerT_958-T1 Valid prediction for CodingQuarry_transcript_2673-T1 Valid prediction for GlimmerHMM_glimmerT_947-T1 Valid prediction for pasa_asmbl_388.p1 Couldn't classify 141174, 141265 Couldn't classify 143516, 143560 Sorry, prediction pasa_asmbl_396.p1 fails validation. (CTG) CT 141174-141265 GT AGG (TCC) AG 142540-142676 GT GGG (GCT) AG 142815-143008 GT AGG (GTC) AG 143286-143399 GT AGG (AAT) AG 143516-143560 GA GGG -recovered pasa_asmbl_396.p1, internal, 142540, 142676 -recovered pasa_asmbl_396.p1, internal, 142815, 143008 -recovered pasa_asmbl_396.p1, internal, 143286, 143399 Couldn't classify 86459, 86494 Couldn't classify 98658, 98716 Sorry, prediction pasa_asmbl_404.p1 fails validation. (GTC) GT 86459-86494 GT AGG (GTT) AG 89059-89121 GT AGG (GAA) AG 89507-89602 GT AGG (GCT) AG 89777-89848 GT AAG (AAC) AG 90156-90296 GT AGG (AGG) AG 90506-90643 GT AGG (CTG) AG 90794-90962 GT AGG (TGC) AG 91278-91328 GT AGG (CAG) AG 92050-92109 GT CGG (ACC) AG 93427-93489 GT GCG (CCG) AG 95275-95334 GT CGG (ATG) AG 96768-96842 GT AGG (AAA) AG 97897-97977 GT AGG (ACG) AG 98658-98716 GG AAG -recovered pasa_asmbl_404.p1, initial, 96768, 96842 add_exon() Sorry, pasa_asmbl_404.p1 91278-91328-terminal-1 is invalid. -recovered pasa_asmbl_404.p1, terminal, 91278, 91328 -recovered pasa_asmbl_404.p1, internal, 89059, 89121 -recovered pasa_asmbl_404.p1, internal, 89507, 89602 -recovered pasa_asmbl_404.p1, internal, 89777, 89848 -recovered pasa_asmbl_404.p1, internal, 90156, 90296 -recovered pasa_asmbl_404.p1, internal, 90506, 90643 -recovered pasa_asmbl_404.p1, internal, 90794, 90962 -recovered pasa_asmbl_404.p1, internal, 91278, 91328 -recovered pasa_asmbl_404.p1, internal, 92050, 92109 -recovered pasa_asmbl_404.p1, internal, 93427, 93489 -recovered pasa_asmbl_404.p1, internal, 95275, 95334 -recovered pasa_asmbl_404.p1, internal, 96768, 96842 -recovered pasa_asmbl_404.p1, internal, 97897, 97977 Valid prediction for CodingQuarry_transcript_2668-T1 Valid prediction for Augustus_model.g707.t1 Valid prediction for Augustus_model.g701.t1 Valid prediction for GlimmerHMM_glimmerT_950-T1 Valid prediction for snap_scaffold_1-snap.1175-T1 Valid prediction for GlimmerHMM_glimmerT_934-T1 Couldn't classify 147639, 147708 Couldn't classify 164671, 164891 Sorry, prediction pasa_asmbl_390.p1 fails validation. (AAG) CC 147639-147708 GT AGG (CCG) AG 148332-148505 GT TGG (GTC) AG 148650-148812 GT AGG (AGG) AG 149084-149244 GT TGG (GCA) AG 150076-150243 GT AGG (GTT) AG 150395-150518 GT AGG (CCC) AG 150626-150779 GT CTG (GAC) AG 151505-151694 GT CGG (GCC) AG 151775-152022 GT TGG (GTG) AG 154028-154130 GT AGG (GCG) AG 154339-154479 GT TGG (AGA) AG 155881-156009 GT GGG (GTG) AG 156157-156330 GT TGG (AAG) AG 156893-157051 GT AGG (GTA) AG 157386-157589 GT AGG (GGT) AG 158671-158823 GT AGG (GAA) AG 158973-159095 GT TGG (AGA) AG 161088-161354 GT AGG (CTG) AG 161441-161578 GT TGG (GTG) AG 161729-161844 GT AGG (GAG) AG 163192-163324 GT AGG (ACA) AG 163367-163543 GT AGG (GTA) AG 164671-164891 AA GTA add_exon() Sorry, pasa_asmbl_390.p1 156893-157051-terminal-1 is invalid. -recovered pasa_asmbl_390.p1, terminal, 156893, 157051 -recovered pasa_asmbl_390.p1, internal, 148332, 148505 -recovered pasa_asmbl_390.p1, internal, 148650, 148812 -recovered pasa_asmbl_390.p1, internal, 149084, 149244 -recovered pasa_asmbl_390.p1, internal, 150076, 150243 -recovered pasa_asmbl_390.p1, internal, 150395, 150518 -recovered pasa_asmbl_390.p1, internal, 150626, 150779 -recovered pasa_asmbl_390.p1, internal, 151505, 151694 -recovered pasa_asmbl_390.p1, internal, 151775, 152022 -recovered pasa_asmbl_390.p1, internal, 154028, 154130 -recovered pasa_asmbl_390.p1, internal, 154339, 154479 -recovered pasa_asmbl_390.p1, internal, 155881, 156009 -recovered pasa_asmbl_390.p1, internal, 156157, 156330 -recovered pasa_asmbl_390.p1, internal, 156893, 157051 -recovered pasa_asmbl_390.p1, internal, 157386, 157589 -recovered pasa_asmbl_390.p1, internal, 158671, 158823 -recovered pasa_asmbl_390.p1, internal, 158973, 159095 -recovered pasa_asmbl_390.p1, internal, 161088, 161354 -recovered pasa_asmbl_390.p1, internal, 161441, 161578 -recovered pasa_asmbl_390.p1, internal, 161729, 161844 -recovered pasa_asmbl_390.p1, internal, 163192, 163324 -recovered pasa_asmbl_390.p1, internal, 163367, 163543 Valid prediction for GlimmerHMM_glimmerT_936-T1 Couldn't classify 104349, 104409 Sorry, prediction pasa_asmbl_401.p1 fails validation. (AGG) GA 104349-104409 GT GAG (CCC) AG 104634-104939 GT GGG (ACG) AG 105190-105307 GT AGG (CTC) AG 107178-107349 GT AGG (TAC) AG 107462-107596 GT ACG (CCA) AG 108758-108841 AA AGA -recovered pasa_asmbl_401.p1, terminal, 108758, 108841 -recovered pasa_asmbl_401.p1, internal, 104634, 104939 -recovered pasa_asmbl_401.p1, internal, 105190, 105307 -recovered pasa_asmbl_401.p1, internal, 107178, 107349 -recovered pasa_asmbl_401.p1, internal, 107462, 107596 Valid prediction for snap_scaffold_1-snap.1153-T1 Valid prediction for GlimmerHMM_glimmerT_940-T1 Valid prediction for GlimmerHMM_glimmerT_930-T1 Valid prediction for snap_scaffold_1-snap.1150-T1 Valid prediction for snap_scaffold_1-snap.1168-T1 Valid prediction for snap_scaffold_1-snap.1147-T1 Valid prediction for snap_scaffold_1-snap.1185-T1 Valid prediction for pasa_asmbl_407.p1 Valid prediction for snap_scaffold_1-snap.1172-T1 Valid prediction for snap_scaffold_1-snap.1184-T1 Valid prediction for GlimmerHMM_glimmerT_960-T1 Valid prediction for GlimmerHMM_glimmerT_949-T1 Valid prediction for GlimmerHMM_glimmerT_937-T1 Valid prediction for GlimmerHMM_glimmerT_938-T1 Valid prediction for HiQ_model.g697.t1 Valid prediction for GlimmerHMM_glimmerT_927-T1 Valid prediction for Augustus_model.g713.t1 Valid prediction for snap_scaffold_1-snap.1158-T1 Valid prediction for Augustus_model.g718.t1 Valid prediction for snap_scaffold_1-snap.1146-T1 Valid prediction for GlimmerHMM_glimmerT_931-T1 Valid prediction for snap_scaffold_1-snap.1174-T1 Valid prediction for snap_scaffold_1-snap.1170-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 155636, rend_intergenic: 155633 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 32769, rend_intergenic: 32103 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 35880, rend_intergenic: 32783 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49754, rend_intergenic: 43976 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 60439, rend_intergenic: 50437 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100103, rend_intergenic: 76857 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 101746, rend_intergenic: 100719 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 106698, rend_intergenic: 102464 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108337, rend_intergenic: 106732 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 123692, rend_intergenic: 117823 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 155636, rend_intergenic: 152528 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 178648, rend_intergenic: 164336 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 180990, rend_intergenic: 178711 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 185923 -exon list size: 541 building trellis 0.2 0.4 0.6 0.7 0.9 1.1 1.3 1.5 1.7 1.8 2.0 2.2 2.4 2.6 2.8 2.9 3.1 3.3 3.5 3.7 3.9 4.1 4.2 4.4 4.6 4.8 5.0 5.2 5.3 5.5 5.7 5.9 6.1 6.3 6.4 6.6 6.8 7.0 7.2 7.4 7.6 7.7 7.9 8.1 8.3 8.5 8.7 8.8 9.0 9.2 9.4 9.6 9.8 9.9 10.1 10.3 10.5 10.7 10.9 11.0 11.2 11.4 11.6 11.8 12.0 12.2 12.3 12.5 12.7 12.9 13.1 13.3 13.4 13.6 13.8 14.0 14.2 14.4 14.5 14.7 14.9 15.1 15.3 15.5 15.7 15.8 16.0 16.2 16.4 16.6 16.8 16.9 17.1 17.3 17.5 17.7 17.9 18.0 18.2 18.4 18.6 18.8 19.0 19.2 19.3 19.5 19.7 19.9 20.1 20.3 20.4 20.6 20.8 21.0 21.2 21.4 21.5 21.7 21.9 22.1 22.3 22.5 22.7 22.8 23.0 23.2 23.4 23.6 23.8 23.9 24.1 24.3 24.5 24.7 24.9 25.0 25.2 25.4 25.6 25.8 26.0 26.2 26.3 26.5 26.7 26.9 27.1 27.3 27.4 27.6 27.8 28.0 28.2 28.4 28.5 28.7 28.9 29.1 29.3 29.5 29.7 29.8 30.0 30.2 30.4 30.6 30.8 30.9 31.1 31.3 31.5 31.7 31.9 32.0 32.2 32.4 32.6 32.8 33.0 33.1 33.3 33.5 33.7 33.9 34.1 34.3 34.4 34.6 34.8 35.0 35.2 35.4 35.5 35.7 35.9 36.1 36.3 36.5 36.6 36.8 37.0 37.2 37.4 37.6 37.8 37.9 38.1 38.3 38.5 38.7 38.9 39.0 39.2 39.4 39.6 39.8 40.0 40.1 40.3 40.5 40.7 40.9 41.1 41.3 41.4 41.6 41.8 42.0 42.2 42.4 42.5 42.7 42.9 43.1 43.3 43.5 43.6 43.8 44.0 44.2 44.4 44.6 44.8 44.9 45.1 45.3 45.5 45.7 45.9 46.0 46.2 46.4 46.6 46.8 47.0 47.1 47.3 47.5 47.7 47.9 48.1 48.3 48.4 48.6 48.8 49.0 49.2 49.4 49.5 49.7 49.9 50.1 50.3 50.5 50.6 50.8 51.0 51.2 51.4 51.6 51.7 51.9 52.1 52.3 52.5 52.7 52.9 53.0 53.2 53.4 53.6 53.8 54.0 54.1 54.3 54.5 54.7 54.9 55.1 55.2 55.4 55.6 55.8 56.0 56.2 56.4 56.5 56.7 56.9 57.1 57.3 57.5 57.6 57.8 58.0 58.2 58.4 58.6 58.7 58.9 59.1 59.3 59.5 59.7 59.9 60.0 60.2 60.4 60.6 60.8 61.0 61.1 61.3 61.5 61.7 61.9 62.1 62.2 62.4 62.6 62.8 63.0 63.2 63.4 63.5 63.7 63.9 64.1 64.3 64.5 64.6 64.8 65.0 65.2 65.4 65.6 65.7 65.9 66.1 66.3 66.5 66.7 66.9 67.0 67.2 67.4 67.6 67.8 68.0 68.1 68.3 68.5 68.7 68.9 69.1 69.2 69.4 69.6 69.8 70.0 70.2 70.3 70.5 70.7 70.9 71.1 71.3 71.5 71.6 71.8 72.0 72.2 72.4 72.6 72.7 72.9 73.1 73.3 73.5 73.7 73.8 74.0 74.2 74.4 74.6 74.8 75.0 75.1 75.3 75.5 75.7 75.9 76.1 76.2 76.4 76.6 76.8 77.0 77.2 77.3 77.5 77.7 77.9 78.1 78.3 78.5 78.6 78.8 79.0 79.2 79.4 79.6 79.7 79.9 80.1 80.3 80.5 80.7 80.8 81.0 81.2 81.4 81.6 81.8 82.0 82.1 82.3 82.5 82.7 82.9 83.1 83.2 83.4 83.6 83.8 84.0 84.2 84.3 84.5 84.7 84.9 85.1 85.3 85.5 85.6 85.8 86.0 86.2 86.4 86.6 86.7 86.9 87.1 87.3 87.5 87.7 87.8 88.0 88.2 88.4 88.6 88.8 89.0 89.1 89.3 89.5 89.7 89.9 90.1 90.2 90.4 90.6 90.8 91.0 91.2 91.3 91.5 91.7 91.9 92.1 92.3 92.4 92.6 92.8 93.0 93.2 93.4 93.6 93.7 93.9 94.1 94.3 94.5 94.7 94.8 95.0 95.2 95.4 95.6 95.8 95.9 96.1 96.3 96.5 96.7 96.9 97.1 97.2 97.4 97.6 97.8 98.0 98.2 98.3 98.5 98.7 98.9 99.1 99.3 99.4 99.6 99.8 -found 27 predictions from path traversal Error with prediction: GlimmerHMM lend_intergenic: 155636, rend_intergenic: 155633 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 32769, rend_intergenic: 32103 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 35880, rend_intergenic: 32783 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49754, rend_intergenic: 43976 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 60439, rend_intergenic: 50437 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100103, rend_intergenic: 76857 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 101746, rend_intergenic: 100719 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 106698, rend_intergenic: 102464 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108337, rend_intergenic: 106732 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 123692, rend_intergenic: 117823 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 155636, rend_intergenic: 152528 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 178648, rend_intergenic: 164336 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 180990, rend_intergenic: 178711 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 23 predictions persist after filtering for low support