-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1/scaffold_1_5786709-5937905

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_722-T1
Valid prediction for snap_scaffold_1-snap.940-T1
Valid prediction for GlimmerHMM_glimmerT_720-T1
Valid prediction for snap_scaffold_1-snap.904-T1
Valid prediction for snap_scaffold_1-snap.923-T1
Valid prediction for GlimmerHMM_glimmerT_736-T1
Valid prediction for Augustus_model.g571.t1
Valid prediction for snap_scaffold_1-snap.927-T1
Valid prediction for snap_scaffold_1-snap.915-T1
Valid prediction for Augustus_model.g560.t1
Valid prediction for Augustus_model.g575.t1
Valid prediction for snap_scaffold_1-snap.913-T1
Valid prediction for snap_scaffold_1-snap.907-T1
Valid prediction for GlimmerHMM_glimmerT_713-T1
Valid prediction for Augustus_model.g559.t1
Valid prediction for snap_scaffold_1-snap.939-T1
Valid prediction for Augustus_model.g573.t1
Valid prediction for snap_scaffold_1-snap.933-T1
Valid prediction for Augustus_model.g566.t1
Valid prediction for snap_scaffold_1-snap.920-T1
Valid prediction for GlimmerHMM_glimmerT_727-T1
Valid prediction for snap_scaffold_1-snap.919-T1
Valid prediction for snap_scaffold_1-snap.930-T1
Valid prediction for Augustus_model.g562.t1
Valid prediction for snap_scaffold_1-snap.911-T1
Valid prediction for GlimmerHMM_glimmerT_728-T1
Valid prediction for snap_scaffold_1-snap.910-T1
Valid prediction for snap_scaffold_1-snap.925-T1
Valid prediction for Augustus_model.g576.t1
Valid prediction for GlimmerHMM_glimmerT_735-T1
Valid prediction for snap_scaffold_1-snap.903-T1
Valid prediction for GlimmerHMM_glimmerT_725-T1
Valid prediction for Augustus_model.g569.t1
Valid prediction for GlimmerHMM_glimmerT_717-T1
Valid prediction for GlimmerHMM_glimmerT_718-T1
Valid prediction for GlimmerHMM_glimmerT_730-T1
Valid prediction for GlimmerHMM_glimmerT_731-T1
Valid prediction for Augustus_model.g565.t1
Valid prediction for snap_scaffold_1-snap.921-T1
Valid prediction for GlimmerHMM_glimmerT_732-T1
Valid prediction for GlimmerHMM_glimmerT_738-T1
Valid prediction for snap_scaffold_1-snap.935-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_737-T1
Valid prediction for snap_scaffold_1-snap.937-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1-snap.936-T1
Valid prediction for Augustus_model.g572.t1
Valid prediction for GlimmerHMM_glimmerT_724-T1
Valid prediction for snap_scaffold_1-snap.916-T1
Valid prediction for snap_scaffold_1-snap.938-T1
Valid prediction for GlimmerHMM_glimmerT_711-T1
Valid prediction for snap_scaffold_1-snap.924-T1
Valid prediction for snap_scaffold_1-snap.908-T1
Valid prediction for Augustus_model.g558.t1
Valid prediction for Augustus_model.g563.t1
Valid prediction for snap_scaffold_1-snap.934-T1
Valid prediction for HiQ_model.g574.t1
Valid prediction for Augustus_model.g557.t1
Valid prediction for GlimmerHMM_glimmerT_721-T1
Valid prediction for GlimmerHMM_glimmerT_714-T1
Valid prediction for snap_scaffold_1-snap.931-T1
Valid prediction for Augustus_model.g564.t1
Valid prediction for snap_scaffold_1-snap.906-T1
Valid prediction for snap_scaffold_1-snap.912-T1
Valid prediction for GlimmerHMM_glimmerT_715-T1
Valid prediction for GlimmerHMM_glimmerT_723-T1
Valid prediction for snap_scaffold_1-snap.917-T1
Valid prediction for GlimmerHMM_glimmerT_734-T1
Valid prediction for GlimmerHMM_glimmerT_710-T1
Valid prediction for Augustus_model.g570.t1
Valid prediction for GlimmerHMM_glimmerT_726-T1
Valid prediction for snap_scaffold_1-snap.928-T1
Valid prediction for GlimmerHMM_glimmerT_716-T1
Valid prediction for snap_scaffold_1-snap.909-T1
Valid prediction for pasa_asmbl_301.p1
Valid prediction for snap_scaffold_1-snap.902-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_712-T1
Valid prediction for GlimmerHMM_glimmerT_733-T1
Valid prediction for snap_scaffold_1-snap.932-T1
Valid prediction for snap_scaffold_1-snap.929-T1
Valid prediction for snap_scaffold_1-snap.918-T1
Valid prediction for snap_scaffold_1-snap.905-T1
Valid prediction for GlimmerHMM_glimmerT_729-T1
Valid prediction for Augustus_model.g568.t1
Valid prediction for snap_scaffold_1-snap.914-T1
Valid prediction for snap_scaffold_1-snap.926-T1
Valid prediction for GlimmerHMM_glimmerT_719-T1
Valid prediction for Augustus_model.g567.t1
Valid prediction for snap_scaffold_1-snap.922-T1
Valid prediction for Augustus_model.g561.t1
Valid prediction for snap_scaffold_1-snap.941-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7001, rend_intergenic: 3654  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14769, rend_intergenic: 11667  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29534, rend_intergenic: 23339  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34231, rend_intergenic: 29562  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43833, rend_intergenic: 38782  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49408, rend_intergenic: 48376  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52457, rend_intergenic: 49472  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62591, rend_intergenic: 54362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69891, rend_intergenic: 67064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89910, rend_intergenic: 78905  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96570, rend_intergenic: 93021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109679, rend_intergenic: 104671  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112482, rend_intergenic: 109943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119812, rend_intergenic: 113291  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124054, rend_intergenic: 122855  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130861, rend_intergenic: 127384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 151197
-exon list size: 331


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.1    
2.4    
2.7    
3.0    
3.3    
3.6    
3.9    
4.2    
4.5    
4.8    
5.1    
5.4    
5.7    
6.0    
6.3    
6.6    
6.9    
7.2    
7.5    
7.8    
8.1    
8.4    
8.7    
9.0    
9.3    
9.6    
9.9    
10.2    
10.5    
10.8    
11.1    
11.4    
11.7    
12.0    
12.3    
12.6    
12.9    
13.2    
13.5    
13.8    
14.1    
14.4    
14.7    
15.0    
15.3    
15.6    
15.9    
16.2    
16.5    
16.8    
17.1    
17.4    
17.7    
18.0    
18.3    
18.6    
18.9    
19.2    
19.5    
19.8    
20.1    
20.4    
20.7    
21.0    
21.3    
21.6    
21.9    
22.2    
22.5    
22.8    
23.1    
23.4    
23.7    
24.0    
24.3    
24.6    
24.9    
25.2    
25.5    
25.8    
26.1    
26.4    
26.7    
27.0    
27.3    
27.6    
27.9    
28.2    
28.5    
28.8    
29.1    
29.4    
29.7    
30.0    
30.3    
30.6    
30.9    
31.2    
31.5    
31.8    
32.1    
32.4    
32.7    
33.0    
33.3    
33.6    
33.9    
34.2    
34.5    
34.8    
35.1    
35.4    
35.7    
36.0    
36.3    
36.6    
36.9    
37.2    
37.5    
37.8    
38.1    
38.4    
38.7    
39.0    
39.3    
39.6    
39.9    
40.2    
40.5    
40.8    
41.1    
41.4    
41.7    
42.0    
42.3    
42.6    
42.9    
43.2    
43.5    
43.8    
44.1    
44.4    
44.7    
45.0    
45.3    
45.6    
45.9    
46.2    
46.5    
46.8    
47.1    
47.4    
47.7    
48.0    
48.3    
48.6    
48.9    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.1    
51.4    
51.7    
52.0    
52.3    
52.6    
52.9    
53.2    
53.5    
53.8    
54.1    
54.4    
54.7    
55.0    
55.3    
55.6    
55.9    
56.2    
56.5    
56.8    
57.1    
57.4    
57.7    
58.0    
58.3    
58.6    
58.9    
59.2    
59.5    
59.8    
60.1    
60.4    
60.7    
61.0    
61.3    
61.6    
61.9    
62.2    
62.5    
62.8    
63.1    
63.4    
63.7    
64.0    
64.3    
64.6    
64.9    
65.2    
65.5    
65.8    
66.1    
66.4    
66.7    
67.0    
67.3    
67.6    
67.9    
68.2    
68.5    
68.8    
69.1    
69.4    
69.7    
70.0    
70.3    
70.6    
70.9    
71.2    
71.5    
71.8    
72.1    
72.4    
72.7    
73.0    
73.3    
73.6    
73.9    
74.2    
74.5    
74.8    
75.1    
75.4    
75.7    
76.0    
76.3    
76.6    
76.9    
77.2    
77.5    
77.8    
78.1    
78.4    
78.7    
79.0    
79.3    
79.6    
79.9    
80.2    
80.5    
80.8    
81.1    
81.4    
81.7    
82.0    
82.3    
82.6    
82.9    
83.2    
83.5    
83.8    
84.1    
84.4    
84.7    
85.0    
85.3    
85.6    
85.9    
86.2    
86.5    
86.8    
87.1    
87.4    
87.7    
88.0    
88.3    
88.6    
88.9    
89.2    
89.5    
89.8    
90.1    
90.4    
90.7    
91.0    
91.3    
91.6    
91.9    
92.2    
92.5    
92.8    
93.1    
93.4    
93.7    
94.0    
94.3    
94.6    
94.9    
95.2    
95.5    
95.8    
96.1    
96.4    
96.7    
97.0    
97.3    
97.6    
97.9    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 7001, rend_intergenic: 3654  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14769, rend_intergenic: 11667  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29534, rend_intergenic: 23339  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34231, rend_intergenic: 29562  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43833, rend_intergenic: 38782  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49408, rend_intergenic: 48376  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52457, rend_intergenic: 49472  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62591, rend_intergenic: 54362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69891, rend_intergenic: 67064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89910, rend_intergenic: 78905  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96570, rend_intergenic: 93021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109679, rend_intergenic: 104671  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112482, rend_intergenic: 109943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119812, rend_intergenic: 113291  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124054, rend_intergenic: 122855  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130861, rend_intergenic: 127384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support