-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1/scaffold_1_5578349-5789098 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g545.t1 Couldn't classify 137278, 137580 Sorry, prediction pasa_asmbl_2833.p1 fails validation. (CCT) CA 137278-137580 CA ACC Valid prediction for GlimmerHMM_glimmerT_697-T1 Valid prediction for pasa_asmbl_1795.p1 Valid prediction for HiQ_model.g553.t1 Valid prediction for CodingQuarry_transcript_2629-T1 Valid prediction for Augustus_model.g549.t1 Valid prediction for snap_scaffold_1-snap.892-T1 Valid prediction for CodingQuarry_transcript_2612-T1 Valid prediction for GlimmerHMM_glimmerT_699-T1 Valid prediction for Augustus_model.g550.t1 Couldn't classify 139824, 139833 Couldn't classify 141698, 141779 Sorry, prediction pasa_asmbl_1759.p1 fails validation. (TGG) CC 139824-139833 GT TGG (TGG) AG 139973-140284 GT AGG (ATG) AG 140406-141071 GT AGG (GCT) AG 141513-141582 GT AGG (TGT) AG 141698-141779 GG CAG add_exon() Sorry, pasa_asmbl_1759.p1 140406-141071-initial-1 is invalid. -recovered pasa_asmbl_1759.p1, initial, 140406, 141071 -recovered pasa_asmbl_1759.p1, internal, 139973, 140284 -recovered pasa_asmbl_1759.p1, internal, 140406, 141071 -recovered pasa_asmbl_1759.p1, internal, 141513, 141582 Couldn't classify 174266, 174295 Sorry, prediction pasa_asmbl_1790.p1 fails validation. (GAC) TG 174266-174295 GT AGG (GAA) AG 174464-174552 GT AGG (TGT) AG 174795-174889 GT AGG (GCA) AG 175025-175197 GT AGG (CTC) AG 175713-175838 GT AGG (ATT) AG 176153-176274 GT AGG (GTT) AG 176446-176571 GT AGG (AGA) AG 176753-176855 AC AGA -recovered pasa_asmbl_1790.p1, terminal, 176753, 176855 -recovered pasa_asmbl_1790.p1, internal, 174464, 174552 -recovered pasa_asmbl_1790.p1, internal, 174795, 174889 -recovered pasa_asmbl_1790.p1, internal, 175025, 175197 -recovered pasa_asmbl_1790.p1, internal, 175713, 175838 -recovered pasa_asmbl_1790.p1, internal, 176153, 176274 -recovered pasa_asmbl_1790.p1, internal, 176446, 176571 Valid prediction for snap_scaffold_1-snap.879-T1 Valid prediction for GlimmerHMM_glimmerT_691-T1 Valid prediction for snap_scaffold_1-snap.871-T1 Valid prediction for snap_scaffold_1-snap.885-T1 Valid prediction for GlimmerHMM_glimmerT_698-T1 Couldn't classify 106139, 106372 Sorry, prediction pasa_asmbl_1749.p1 fails validation. (TTC) TT 106139-106372 GT AGG (GTC) AG 106596-106746 GT ATG (CAG) AG 107005-107133 GT GGG (GGT) AG 107479-107640 GT AGG (GGA) AG 107752-108404 CT GAC -recovered pasa_asmbl_1749.p1, terminal, 107752, 108404 -recovered pasa_asmbl_1749.p1, internal, 106596, 106746 -recovered pasa_asmbl_1749.p1, internal, 107005, 107133 -recovered pasa_asmbl_1749.p1, internal, 107479, 107640 Valid prediction for GlimmerHMM_glimmerT_700-T1 Valid prediction for CodingQuarry_transcript_2618-T1 Valid prediction for snap_scaffold_1-snap.900-T1 Couldn't classify 121592, 121733 Couldn't classify 124314, 124412 Sorry, prediction pasa_asmbl_1752.p1 fails validation. (GAG) GA 121592-121733 GT AGG (AGT) AG 122024-122119 GT GGG (AAA) AG 122256-122301 GT AAG (CTG) AG 122381-122460 GT AAG (AGA) AG 122623-122748 GT AGG (AGA) AG 123054-123127 GT TAG (GTG) AG 123537-123608 GT CTG (AAA) AG 123723-123842 GT CGG (GAA) AG 123985-124032 GT CCG (ATT) AG 124111-124185 GT AGG (ATA) AG 124314-124412 AA GCA -recovered pasa_asmbl_1752.p1, terminal, 122623, 122748 -recovered pasa_asmbl_1752.p1, internal, 122024, 122119 -recovered pasa_asmbl_1752.p1, internal, 122256, 122301 -recovered pasa_asmbl_1752.p1, internal, 122381, 122460 -recovered pasa_asmbl_1752.p1, internal, 122623, 122748 -recovered pasa_asmbl_1752.p1, internal, 123054, 123127 -recovered pasa_asmbl_1752.p1, internal, 123537, 123608 -recovered pasa_asmbl_1752.p1, internal, 123723, 123842 -recovered pasa_asmbl_1752.p1, internal, 123985, 124032 -recovered pasa_asmbl_1752.p1, internal, 124111, 124185 Valid prediction for GlimmerHMM_glimmerT_679-T1 Valid prediction for pasa_asmbl_1776.p1 Valid prediction for GlimmerHMM_glimmerT_687-T1 Valid prediction for snap_scaffold_1-snap.895-T1 Valid prediction for GlimmerHMM_glimmerT_706-T1 Valid prediction for CodingQuarry_transcript_2628-T1 Valid prediction for snap_scaffold_1-snap.877-T1 Valid prediction for snap_scaffold_1-snap.901-T1 Valid prediction for pasa_asmbl_1743.p1 Valid prediction for HiQ_model.g538.t1 Valid prediction for snap_scaffold_1-snap.880-T1 Valid prediction for snap_scaffold_1-snap.874-T1 Valid prediction for GlimmerHMM_glimmerT_685-T1 Valid prediction for snap_scaffold_1-snap.878-T1 Valid prediction for snap_scaffold_1-snap.893-T1 Couldn't classify 161309, 161424 Couldn't classify 161720, 161849 Sorry, prediction CodingQuarry_transcript_2621-T1 fails validation. (ATG) TC 160916-160990 GT CAG (GTG) AG 161072-161167 GT AGG (GAG) AG 161309-161424 AG CAA (GCA) CT 161720-161849 GT TGG (AGG) AG 162088-162238 GT TGG (TGT) AG 162608-162729 GT AGG (TTG) AG 162828-162995 AA AGA -recovered CodingQuarry_transcript_2621-T1, initial, 160916, 160990 -recovered CodingQuarry_transcript_2621-T1, terminal, 162828, 162995 -recovered CodingQuarry_transcript_2621-T1, internal, 161072, 161167 -recovered CodingQuarry_transcript_2621-T1, internal, 162088, 162238 -recovered CodingQuarry_transcript_2621-T1, internal, 162608, 162729 Couldn't classify 40379, 40709 Sorry, prediction pasa_asmbl_1731.p1 fails validation. (ACA) CT 40379-40709 GT TGG (CAG) AG 41034-41209 AC AAA -recovered pasa_asmbl_1731.p1, terminal, 41034, 41209 Valid prediction for pasa_asmbl_1793.p1 Valid prediction for snap_scaffold_1-snap.883-T1 Couldn't classify 138631, 138665 Couldn't classify 139521, 139739 Sorry, prediction pasa_asmbl_1758.p1 fails validation. (CCT) TG 138631-138665 GT AGG (GCT) AG 138804-138960 GT AGG (AGG) AG 139054-139185 GT AGG (ATG) AG 139293-139421 GT AGG (GTA) AG 139521-139739 CA GGC -recovered pasa_asmbl_1758.p1, initial, 139293, 139421 -recovered pasa_asmbl_1758.p1, internal, 138804, 138960 -recovered pasa_asmbl_1758.p1, internal, 139054, 139185 -recovered pasa_asmbl_1758.p1, internal, 139293, 139421 Couldn't classify 38994, 39129 Sorry, prediction pasa_asmbl_1729.p1 fails validation. (ATG) CC 37354-37420 GT TGG (CTG) AG 38178-38331 GT AGG (ATT) AG 38994-39129 CG GAC -recovered pasa_asmbl_1729.p1, initial, 37354, 37420 -recovered pasa_asmbl_1729.p1, internal, 38178, 38331 Valid prediction for GlimmerHMM_glimmerT_692-T1 Valid prediction for GlimmerHMM_glimmerT_705-T1 Valid prediction for snap_scaffold_1-snap.896-T1 Valid prediction for CodingQuarry_transcript_2616-T1 Valid prediction for GlimmerHMM_glimmerT_694-T1 Couldn't classify 88005, 88073 Couldn't classify 88211, 89779 Sorry, prediction pasa_asmbl_1744.p1 fails validation. (ATG) GG 86819-86945 GT TGG (GAG) AG 87048-87110 GT ATG (GTG) AG 87185-87263 GT AGG (ACT) AG 87721-87871 GT AGG (GAT) AG 88005-88073 AT ATA (ATG) AC 88211-89779 GT TGG (GAT) AG 89892-90080 GT AGG (AAA) AG 90200-90310 GT AGG (CTC) AG 90398-90488 GT AGG (AGA) AG 90582-90717 GT AGG (AGA) AG 90919-90996 GT AGG (TAA) AG 91163-91485 GT AGG (AAT) AG 91627-91768 GT AGG (GGA) AG 91902-91963 GT AGG (AGG) AG 92175-92257 GT AGG (GAC) AG 92383-92451 GA GAG -recovered pasa_asmbl_1744.p1, initial, 86819, 86945 -recovered pasa_asmbl_1744.p1, initial, 88211, 89779 add_exon() Sorry, pasa_asmbl_1744.p1 91902-91963-terminal-2 is invalid. -recovered pasa_asmbl_1744.p1, terminal, 91902, 91963 -recovered pasa_asmbl_1744.p1, terminal, 92383, 92451 -recovered pasa_asmbl_1744.p1, internal, 87048, 87110 -recovered pasa_asmbl_1744.p1, internal, 87185, 87263 -recovered pasa_asmbl_1744.p1, internal, 87721, 87871 -recovered pasa_asmbl_1744.p1, internal, 89892, 90080 -recovered pasa_asmbl_1744.p1, internal, 90200, 90310 -recovered pasa_asmbl_1744.p1, internal, 90398, 90488 -recovered pasa_asmbl_1744.p1, internal, 90582, 90717 -recovered pasa_asmbl_1744.p1, internal, 90919, 90996 -recovered pasa_asmbl_1744.p1, internal, 91163, 91485 -recovered pasa_asmbl_1744.p1, internal, 91627, 91768 -recovered pasa_asmbl_1744.p1, internal, 91902, 91963 -recovered pasa_asmbl_1744.p1, internal, 92175, 92257 Valid prediction for snap_scaffold_1-snap.870-T1 Valid prediction for GlimmerHMM_glimmerT_703-T1 Valid prediction for pasa_asmbl_1739.p1 Valid prediction for GlimmerHMM_glimmerT_689-T1 Valid prediction for CodingQuarry_transcript_2614-T1 Valid prediction for GlimmerHMM_glimmerT_702-T1 Couldn't classify 195944, 196605 Sorry, prediction pasa_asmbl_1797.p2 fails validation. (ATG) AT 195626-195629 GT GGG (GTA) AG 195944-196605 GG CTG -recovered pasa_asmbl_1797.p2, initial, 195626, 195629 Valid prediction for CodingQuarry_transcript_2627-T1 Valid prediction for CodingQuarry_transcript_2615-T1 Valid prediction for Augustus_model.g525.t1 Couldn't classify 104697, 104751 Sorry, prediction pasa_asmbl_1745.p1 fails validation. (ATG) AC 98890-98964 GT CCG (GTG) AG 99541-99624 GT AAG (CTG) AG 99761-99943 GT ATG (GAA) AG 100281-100329 GT AGG (GAG) AG 100579-100742 GT AGG (ATA) AG 100831-100926 GT AGG (ATA) AG 101032-101127 GT TGG (GAC) AG 101329-101481 GT TGG (AAA) AG 101628-101696 GT AAG (CAC) AG 102120-102305 GT AGG (CTG) AG 102448-102576 GT AGG (GTA) AG 102799-102912 GT AGG (AGC) AG 103568-103679 GT AGG (CAG) AG 104260-104375 GT AGG (CTA) AG 104467-104528 GT AGG (CTG) AG 104697-104751 GT CGG -recovered pasa_asmbl_1745.p1, initial, 98890, 98964 -recovered pasa_asmbl_1745.p1, internal, 99541, 99624 -recovered pasa_asmbl_1745.p1, internal, 99761, 99943 -recovered pasa_asmbl_1745.p1, internal, 100281, 100329 -recovered pasa_asmbl_1745.p1, internal, 100579, 100742 -recovered pasa_asmbl_1745.p1, internal, 100831, 100926 -recovered pasa_asmbl_1745.p1, internal, 101032, 101127 -recovered pasa_asmbl_1745.p1, internal, 101329, 101481 -recovered pasa_asmbl_1745.p1, internal, 101628, 101696 -recovered pasa_asmbl_1745.p1, internal, 102120, 102305 -recovered pasa_asmbl_1745.p1, internal, 102448, 102576 -recovered pasa_asmbl_1745.p1, internal, 102799, 102912 -recovered pasa_asmbl_1745.p1, internal, 103568, 103679 -recovered pasa_asmbl_1745.p1, internal, 104260, 104375 -recovered pasa_asmbl_1745.p1, internal, 104467, 104528 -recovered pasa_asmbl_1745.p1, internal, 104697, 104751 Valid prediction for HiQ_model.g531.t1 Valid prediction for Augustus_model.g539.t1 Valid prediction for Augustus_model.g534.t1 Valid prediction for HiQ_model.g548.t1 Valid prediction for HiQ_model.g551.t1 Valid prediction for pasa_asmbl_2801.p1 Valid prediction for snap_scaffold_1-snap.862-T1 Valid prediction for snap_scaffold_1-snap.897-T1 Couldn't classify 88005, 88073 Couldn't classify 88211, 89779 Sorry, prediction CodingQuarry_transcript_2617-T1 fails validation. (ATG) GG 86819-86945 GT TGG (GAG) AG 87048-87110 GT ATG (GTG) AG 87185-87263 GT AGG (ACT) AG 87721-87871 GT AGG (GAT) AG 88005-88073 AT ATA (ATG) AC 88211-89779 GT TGG (GAT) AG 89892-90080 GT AGG (AAA) AG 90200-90310 GT AGG (CTC) AG 90398-90488 GT AGG (AGA) AG 90582-90717 GT AGG (AGA) AG 90919-90996 GT AGG (TAA) AG 91163-91485 GT AGG (AAT) AG 91627-91768 GT AGG (GGA) AG 91902-91963 GT AGG (AGG) AG 92175-92257 GT AGG (GAC) AG 92383-92451 GA GAG -recovered CodingQuarry_transcript_2617-T1, initial, 86819, 86945 -recovered CodingQuarry_transcript_2617-T1, initial, 88211, 89779 add_exon() Sorry, CodingQuarry_transcript_2617-T1 91902-91963-terminal-2 is invalid. -recovered CodingQuarry_transcript_2617-T1, terminal, 91902, 91963 -recovered CodingQuarry_transcript_2617-T1, terminal, 92383, 92451 -recovered CodingQuarry_transcript_2617-T1, internal, 87048, 87110 -recovered CodingQuarry_transcript_2617-T1, internal, 87185, 87263 -recovered CodingQuarry_transcript_2617-T1, internal, 87721, 87871 -recovered CodingQuarry_transcript_2617-T1, internal, 89892, 90080 -recovered CodingQuarry_transcript_2617-T1, internal, 90200, 90310 -recovered CodingQuarry_transcript_2617-T1, internal, 90398, 90488 -recovered CodingQuarry_transcript_2617-T1, internal, 90582, 90717 -recovered CodingQuarry_transcript_2617-T1, internal, 90919, 90996 -recovered CodingQuarry_transcript_2617-T1, internal, 91163, 91485 -recovered CodingQuarry_transcript_2617-T1, internal, 91627, 91768 -recovered CodingQuarry_transcript_2617-T1, internal, 91902, 91963 -recovered CodingQuarry_transcript_2617-T1, internal, 92175, 92257 Valid prediction for GlimmerHMM_glimmerT_701-T1 Valid prediction for CodingQuarry_transcript_2620-T1 Valid prediction for GlimmerHMM_glimmerT_686-T1 Valid prediction for HiQ_model.g546.t1 Valid prediction for snap_scaffold_1-snap.890-T1 Couldn't classify 180735, 180829 Sorry, prediction pasa_asmbl_1791.p1 fails validation. (ATG) AA 178557-178875 GT CAG (ATT) AG 180735-180829 GA TGG -recovered pasa_asmbl_1791.p1, initial, 178557, 178875 Valid prediction for snap_scaffold_1-snap.894-T1 Valid prediction for GlimmerHMM_glimmerT_675-T1 Valid prediction for GlimmerHMM_glimmerT_682-T1 Valid prediction for GlimmerHMM_glimmerT_704-T1 Valid prediction for Augustus_model.g552.t1 Valid prediction for pasa_asmbl_1767.p1 Valid prediction for CodingQuarry_transcript_2611-T1 Valid prediction for pasa_asmbl_1787.p1 Valid prediction for snap_scaffold_1-snap.881-T1 Valid prediction for snap_scaffold_1-snap.898-T1 Valid prediction for HiQ_model.g537.t1 Valid prediction for HiQ_model.g544.t1 Valid prediction for snap_scaffold_1-snap.888-T1 Valid prediction for Augustus_model.g554.t1 Couldn't classify 142175, 142308 Sorry, prediction pasa_asmbl_1761.p1 fails validation. (CAG) CC 142175-142308 GT TGG (GCA) AG 142448-142631 AG GAA -recovered pasa_asmbl_1761.p1, terminal, 142448, 142631 Valid prediction for pasa_asmbl_1784.p1 Valid prediction for CodingQuarry_transcript_2625-T1 Valid prediction for HiQ_model.g535.t1 Valid prediction for snap_scaffold_1-snap.873-T1 Couldn't classify 104851, 105630 Sorry, prediction pasa_asmbl_1746.p1 fails validation. (GAG) AG 104851-105630 CT TAC Valid prediction for HiQ_model.g529.t1 Couldn't classify 125404, 125418 Sorry, prediction pasa_asmbl_1753.p1 fails validation. (GTC) TC 125404-125418 GT GGG (CTT) AG 125530-125619 GT TGG (GGC) AG 125790-125936 GT ATG (GGC) AG 126064-126120 GT TGG (GGC) AG 126235-126442 GT AGG (TCT) AG 126551-126700 GT AGG (GGT) AG 126926-127030 GT GGG (AAG) AG 127188-127295 GT CGG (CTC) AG 127393-127586 GT CTG (AAT) AG 128126-128270 GT CGG (GTA) AG 128400-128533 GT AGG (CTT) AG 128652-128817 GT AGG (ATG) AG 128892-128998 GT AAG (ATG) AG 129185-129301 GT AGG (ACA) AG 129384-129524 GT AGG (GAT) AG 129671-129784 GT TAG (GTG) AG 129883-130029 GT GGG (AAT) AG 130126-130227 GT GTG (GAC) AG 130412-130462 CG AGC add_exon() Sorry, pasa_asmbl_1753.p1 128892-128998-initial-1 is invalid. -recovered pasa_asmbl_1753.p1, initial, 128892, 128998 -recovered pasa_asmbl_1753.p1, initial, 129185, 129301 -recovered pasa_asmbl_1753.p1, terminal, 130412, 130462 -recovered pasa_asmbl_1753.p1, internal, 125530, 125619 -recovered pasa_asmbl_1753.p1, internal, 125790, 125936 -recovered pasa_asmbl_1753.p1, internal, 126064, 126120 -recovered pasa_asmbl_1753.p1, internal, 126235, 126442 -recovered pasa_asmbl_1753.p1, internal, 126551, 126700 -recovered pasa_asmbl_1753.p1, internal, 126926, 127030 -recovered pasa_asmbl_1753.p1, internal, 127188, 127295 -recovered pasa_asmbl_1753.p1, internal, 127393, 127586 -recovered pasa_asmbl_1753.p1, internal, 128126, 128270 -recovered pasa_asmbl_1753.p1, internal, 128400, 128533 -recovered pasa_asmbl_1753.p1, internal, 128652, 128817 -recovered pasa_asmbl_1753.p1, internal, 128892, 128998 -recovered pasa_asmbl_1753.p1, internal, 129185, 129301 -recovered pasa_asmbl_1753.p1, internal, 129384, 129524 -recovered pasa_asmbl_1753.p1, internal, 129671, 129784 -recovered pasa_asmbl_1753.p1, internal, 129883, 130029 -recovered pasa_asmbl_1753.p1, internal, 130126, 130227 Valid prediction for snap_scaffold_1-snap.899-T1 Couldn't classify 50454, 50474 Sorry, prediction pasa_asmbl_1735.p1 fails validation. (TCC) CT 50454-50474 GT AGG (CCA) AG 51200-51289 GT AGG (CTG) AG 51805-51863 GT GGG (GAA) AG 52001-52073 GT AGG (GGA) AG 52193-52475 GT CGG (GAA) AG 53911-54046 GT AGG (AAG) AG 54232-54334 GT AGG (GTT) AG 54541-54623 GT GGG (GTT) AG 54852-55083 GA GAG -recovered pasa_asmbl_1735.p1, terminal, 54852, 55083 -recovered pasa_asmbl_1735.p1, internal, 51200, 51289 -recovered pasa_asmbl_1735.p1, internal, 51805, 51863 -recovered pasa_asmbl_1735.p1, internal, 52001, 52073 -recovered pasa_asmbl_1735.p1, internal, 52193, 52475 -recovered pasa_asmbl_1735.p1, internal, 53911, 54046 -recovered pasa_asmbl_1735.p1, internal, 54232, 54334 -recovered pasa_asmbl_1735.p1, internal, 54541, 54623 Valid prediction for snap_scaffold_1-snap.889-T1 Valid prediction for Augustus_model.g541.t1 Valid prediction for snap_scaffold_1-snap.865-T1 Valid prediction for CodingQuarry_transcript_2623-T1 Valid prediction for snap_scaffold_1-snap.868-T1 Valid prediction for GlimmerHMM_glimmerT_681-T1 Valid prediction for GlimmerHMM_glimmerT_677-T1 Valid prediction for snap_scaffold_1-snap.875-T1 Valid prediction for CodingQuarry_transcript_2626-T1 Valid prediction for snap_scaffold_1-snap.882-T1 Valid prediction for Augustus_model.g555.t1 Valid prediction for snap_scaffold_1-snap.872-T1 Valid prediction for CodingQuarry_transcript_2622-T1 Valid prediction for pasa_asmbl_1736.p1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g527.t1 Valid prediction for snap_scaffold_1-snap.884-T1 Valid prediction for GlimmerHMM_glimmerT_678-T1 Valid prediction for GlimmerHMM_glimmerT_708-T1 Valid prediction for CodingQuarry_transcript_2613-T1 Valid prediction for GlimmerHMM_glimmerT_684-T1 Valid prediction for Augustus_model.g532.t1 Valid prediction for GlimmerHMM_glimmerT_693-T1 Couldn't classify 42199, 42351 Sorry, prediction pasa_asmbl_299.p1 fails validation. (GCT) GG 42199-42351 GT AGG (GTC) AG 42437-42501 GT TGG (TTT) AG 42694-42743 GT GGG (ACG) AG 42856-42961 GT AGG (GTT) AG 43058-43153 GT GGG (GCG) AG 43359-43469 GT AGG (GCC) AG 43686-43716 GG AGG -recovered pasa_asmbl_299.p1, terminal, 43686, 43716 -recovered pasa_asmbl_299.p1, internal, 42437, 42501 -recovered pasa_asmbl_299.p1, internal, 42694, 42743 -recovered pasa_asmbl_299.p1, internal, 42856, 42961 -recovered pasa_asmbl_299.p1, internal, 43058, 43153 -recovered pasa_asmbl_299.p1, internal, 43359, 43469 Valid prediction for GlimmerHMM_glimmerT_688-T1 Valid prediction for GlimmerHMM_glimmerT_680-T1 Valid prediction for HiQ_model.g528.t1 Valid prediction for GlimmerHMM_glimmerT_695-T1 Valid prediction for GlimmerHMM_glimmerT_696-T1 Valid prediction for CodingQuarry_transcript_2610-T1 Valid prediction for Augustus_model.g533.t1 Valid prediction for Augustus_model.g523.t1 Valid prediction for snap_scaffold_1-snap.886-T1 Valid prediction for Augustus_model.g542.t1 Couldn't classify 165902, 166270 Sorry, prediction pasa_asmbl_280.p1 fails validation. (CTG) GC 165902-166270 CT TGC Valid prediction for GlimmerHMM_glimmerT_683-T1 Valid prediction for pasa_asmbl_278.p1 Valid prediction for snap_scaffold_1-snap.861-T1 Valid prediction for Augustus_model.g526.t1 Valid prediction for Augustus_model.g530.t1 Valid prediction for snap_scaffold_1-snap.869-T1 Valid prediction for Augustus_model.g540.t1 Valid prediction for snap_scaffold_1-snap.876-T1 Valid prediction for snap_scaffold_1-snap.863-T1 Valid prediction for snap_scaffold_1-snap.867-T1 Valid prediction for snap_scaffold_1-snap.866-T1 Couldn't classify 166936, 167007 Sorry, prediction pasa_asmbl_279.p1 fails validation. (ATT) AG 166936-167007 GT AGG (ATG) AG 167168-167254 GT AGG (GTG) AG 167453-167708 GT AGG (AAC) AG 167846-167913 GT AGG -recovered pasa_asmbl_279.p1, initial, 167168, 167254 -recovered pasa_asmbl_279.p1, terminal, 167846, 167913 -recovered pasa_asmbl_279.p1, internal, 166936, 167007 -recovered pasa_asmbl_279.p1, internal, 167168, 167254 -recovered pasa_asmbl_279.p1, internal, 167453, 167708 -recovered pasa_asmbl_279.p1, internal, 167846, 167913 Valid prediction for snap_scaffold_1-snap.864-T1 Valid prediction for GlimmerHMM_glimmerT_707-T1 Valid prediction for CodingQuarry_transcript_2619-T1 Valid prediction for Augustus_model.g547.t1 Valid prediction for snap_scaffold_1-snap.891-T1 Valid prediction for snap_scaffold_1-snap.887-T1 Valid prediction for CodingQuarry_transcript_2624-T1 Couldn't classify 56743, 56774 Sorry, prediction pasa_asmbl_294.p1 fails validation. (CAG) AG 56743-56774 GT AGG (GTG) AG 57036-57422 GT GAG (CCA) AG 57503-57654 GT AGG (GGG) AG 57805-57980 GT AGG (GTA) AG 58085-58981 TG GAT -recovered pasa_asmbl_294.p1, terminal, 58085, 58981 -recovered pasa_asmbl_294.p1, internal, 56743, 56774 -recovered pasa_asmbl_294.p1, internal, 57036, 57422 -recovered pasa_asmbl_294.p1, internal, 57503, 57654 -recovered pasa_asmbl_294.p1, internal, 57805, 57980 Valid prediction for GlimmerHMM_glimmerT_674-T1 Valid prediction for HiQ_model.g543.t1 Valid prediction for GlimmerHMM_glimmerT_676-T1 Valid prediction for GlimmerHMM_glimmerT_690-T1 Valid prediction for Augustus_model.g536.t1 Valid prediction for Augustus_model.g524.t1 Couldn't classify 163779, 163881 Couldn't classify 164793, 164934 Sorry, prediction pasa_asmbl_281.p1 fails validation. (GAA) AC 163779-163881 GT TGG (GTA) AG 164093-164163 GT AGG (CTA) AG 164298-164468 GT AGG (GTA) AG 164554-164672 GT AGG (CCC) AG 164793-164934 TC GAT -recovered pasa_asmbl_281.p1, internal, 164093, 164163 -recovered pasa_asmbl_281.p1, internal, 164298, 164468 -recovered pasa_asmbl_281.p1, internal, 164554, 164672 Valid prediction for Augustus_model.g556.t1 Valid prediction for pasa_asmbl_288.p1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13733, rend_intergenic: 6978 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 21384, rend_intergenic: 17020 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 210750 -exon list size: 562 building trellis 0.2 0.4 0.5 0.7 0.9 1.1 1.2 1.4 1.6 1.8 2.0 2.1 2.3 2.5 2.7 2.8 3.0 3.2 3.4 3.5 3.7 3.9 4.1 4.3 4.4 4.6 4.8 5.0 5.1 5.3 5.5 5.7 5.9 6.0 6.2 6.4 6.6 6.7 6.9 7.1 7.3 7.4 7.6 7.8 8.0 8.2 8.3 8.5 8.7 8.9 9.0 9.2 9.4 9.6 9.8 9.9 10.1 10.3 10.5 10.6 10.8 11.0 11.2 11.3 11.5 11.7 11.9 12.1 12.2 12.4 12.6 12.8 12.9 13.1 13.3 13.5 13.7 13.8 14.0 14.2 14.4 14.5 14.7 14.9 15.1 15.2 15.4 15.6 15.8 16.0 16.1 16.3 16.5 16.7 16.8 17.0 17.2 17.4 17.6 17.7 17.9 18.1 18.3 18.4 18.6 18.8 19.0 19.1 19.3 19.5 19.7 19.9 20.0 20.2 20.4 20.6 20.7 20.9 21.1 21.3 21.5 21.6 21.8 22.0 22.2 22.3 22.5 22.7 22.9 23.0 23.2 23.4 23.6 23.8 23.9 24.1 24.3 24.5 24.6 24.8 25.0 25.2 25.4 25.5 25.7 25.9 26.1 26.2 26.4 26.6 26.8 27.0 27.1 27.3 27.5 27.7 27.8 28.0 28.2 28.4 28.5 28.7 28.9 29.1 29.3 29.4 29.6 29.8 30.0 30.1 30.3 30.5 30.7 30.9 31.0 31.2 31.4 31.6 31.7 31.9 32.1 32.3 32.4 32.6 32.8 33.0 33.2 33.3 33.5 33.7 33.9 34.0 34.2 34.4 34.6 34.8 34.9 35.1 35.3 35.5 35.6 35.8 36.0 36.2 36.3 36.5 36.7 36.9 37.1 37.2 37.4 37.6 37.8 37.9 38.1 38.3 38.5 38.7 38.8 39.0 39.2 39.4 39.5 39.7 39.9 40.1 40.2 40.4 40.6 40.8 41.0 41.1 41.3 41.5 41.7 41.8 42.0 42.2 42.4 42.6 42.7 42.9 43.1 43.3 43.4 43.6 43.8 44.0 44.1 44.3 44.5 44.7 44.9 45.0 45.2 45.4 45.6 45.7 45.9 46.1 46.3 46.5 46.6 46.8 47.0 47.2 47.3 47.5 47.7 47.9 48.0 48.2 48.4 48.6 48.8 48.9 49.1 49.3 49.5 49.6 49.8 50.0 50.2 50.4 50.5 50.7 50.9 51.1 51.2 51.4 51.6 51.8 52.0 52.1 52.3 52.5 52.7 52.8 53.0 53.2 53.4 53.5 53.7 53.9 54.1 54.3 54.4 54.6 54.8 55.0 55.1 55.3 55.5 55.7 55.9 56.0 56.2 56.4 56.6 56.7 56.9 57.1 57.3 57.4 57.6 57.8 58.0 58.2 58.3 58.5 58.7 58.9 59.0 59.2 59.4 59.6 59.8 59.9 60.1 60.3 60.5 60.6 60.8 61.0 61.2 61.3 61.5 61.7 61.9 62.1 62.2 62.4 62.6 62.8 62.9 63.1 63.3 63.5 63.7 63.8 64.0 64.2 64.4 64.5 64.7 64.9 65.1 65.2 65.4 65.6 65.8 66.0 66.1 66.3 66.5 66.7 66.8 67.0 67.2 67.4 67.6 67.7 67.9 68.1 68.3 68.4 68.6 68.8 69.0 69.1 69.3 69.5 69.7 69.9 70.0 70.2 70.4 70.6 70.7 70.9 71.1 71.3 71.5 71.6 71.8 72.0 72.2 72.3 72.5 72.7 72.9 73.0 73.2 73.4 73.6 73.8 73.9 74.1 74.3 74.5 74.6 74.8 75.0 75.2 75.4 75.5 75.7 75.9 76.1 76.2 76.4 76.6 76.8 77.0 77.1 77.3 77.5 77.7 77.8 78.0 78.2 78.4 78.5 78.7 78.9 79.1 79.3 79.4 79.6 79.8 80.0 80.1 80.3 80.5 80.7 80.9 81.0 81.2 81.4 81.6 81.7 81.9 82.1 82.3 82.4 82.6 82.8 83.0 83.2 83.3 83.5 83.7 83.9 84.0 84.2 84.4 84.6 84.8 84.9 85.1 85.3 85.5 85.6 85.8 86.0 86.2 86.3 86.5 86.7 86.9 87.1 87.2 87.4 87.6 87.8 87.9 88.1 88.3 88.5 88.7 88.8 89.0 89.2 89.4 89.5 89.7 89.9 90.1 90.2 90.4 90.6 90.8 91.0 91.1 91.3 91.5 91.7 91.8 92.0 92.2 92.4 92.6 92.7 92.9 93.1 93.3 93.4 93.6 93.8 94.0 94.1 94.3 94.5 94.7 94.9 95.0 95.2 95.4 95.6 95.7 95.9 96.1 96.3 96.5 96.6 96.8 97.0 97.2 97.3 97.5 97.7 97.9 98.0 98.2 98.4 98.6 98.8 98.9 99.1 99.3 99.5 99.6 99.8 -found 37 predictions from path traversal Error with prediction: snap lend_intergenic: 13733, rend_intergenic: 6978 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 21384, rend_intergenic: 17020 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 35 predictions persist after filtering for low support