-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1/scaffold_1_4584268-4839934

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1-snap.691-T1
Valid prediction for CodingQuarry_transcript_2596-T1
Valid prediction for snap_scaffold_1-snap.686-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for CodingQuarry_transcript_2593-T1
Valid prediction for GlimmerHMM_glimmerT_536-T1
Valid prediction for Augustus_model.g437.t1
Valid prediction for HiQ_model.g421.t1
Valid prediction for snap_scaffold_1-snap.673-T1
Valid prediction for pasa_asmbl_1680.p1
Valid prediction for pasa_asmbl_1681.p1
Valid prediction for HiQ_model.g424.t1
Valid prediction for GlimmerHMM_glimmerT_554-T1
Valid prediction for snap_scaffold_1-snap.678-T1
Valid prediction for Augustus_model.g432.t1
Valid prediction for GlimmerHMM_glimmerT_534-T1
Valid prediction for GlimmerHMM_glimmerT_556-T1
Couldn't classify 26872, 27903
Sorry, prediction pasa_asmbl_1682.p1 fails validation.
(ATG)	 CC	26872-27903	GG	ATG
Valid prediction for Augustus_model.g435.t1
Valid prediction for GlimmerHMM_glimmerT_538-T1
Valid prediction for GlimmerHMM_glimmerT_535-T1
Valid prediction for snap_scaffold_1-snap.675-T1
Valid prediction for snap_scaffold_1-snap.688-T1
Valid prediction for snap_scaffold_1-snap.687-T1
Valid prediction for Augustus_model.g431.t1
Valid prediction for Augustus_model.g430.t1
Valid prediction for GlimmerHMM_glimmerT_532-T1
Valid prediction for Augustus_model.g433.t1
Valid prediction for snap_scaffold_1-snap.703-T1
Valid prediction for pasa_asmbl_1674.p1
Valid prediction for snap_scaffold_1-snap.698-T1
Valid prediction for GlimmerHMM_glimmerT_557-T1
Valid prediction for GlimmerHMM_glimmerT_549-T1
Valid prediction for GlimmerHMM_glimmerT_555-T1
Valid prediction for GlimmerHMM_glimmerT_553-T1
Valid prediction for GlimmerHMM_glimmerT_547-T1
Valid prediction for snap_scaffold_1-snap.674-T1
Valid prediction for GlimmerHMM_glimmerT_541-T1
Valid prediction for GlimmerHMM_glimmerT_550-T1
Valid prediction for GlimmerHMM_glimmerT_533-T1
Valid prediction for snap_scaffold_1-snap.677-T1
Valid prediction for snap_scaffold_1-snap.694-T1
Valid prediction for snap_scaffold_1-snap.676-T1
Valid prediction for snap_scaffold_1-snap.669-T1
Valid prediction for pasa_asmbl_1678.p1
Valid prediction for snap_scaffold_1-snap.699-T1
Valid prediction for snap_scaffold_1-snap.689-T1
Valid prediction for snap_scaffold_1-snap.706-T1
Valid prediction for snap_scaffold_1-snap.684-T1
Valid prediction for snap_scaffold_1-snap.692-T1
Valid prediction for GlimmerHMM_glimmerT_530-T1
Valid prediction for snap_scaffold_1-snap.700-T1
Valid prediction for snap_scaffold_1-snap.693-T1
Valid prediction for GlimmerHMM_glimmerT_552-T1
Valid prediction for HiQ_model.g426.t1
Valid prediction for GlimmerHMM_glimmerT_548-T1
Valid prediction for GlimmerHMM_glimmerT_559-T1
Valid prediction for snap_scaffold_1-snap.690-T1
Valid prediction for Augustus_model.g429.t1
Valid prediction for pasa_asmbl_1684.p1
Valid prediction for GlimmerHMM_glimmerT_542-T1
Valid prediction for snap_scaffold_1-snap.697-T1
Valid prediction for snap_scaffold_1-snap.695-T1
Valid prediction for Augustus_model.g434.t1
Valid prediction for snap_scaffold_1-snap.704-T1
Valid prediction for HiQ_model.g425.t1
Valid prediction for Augustus_model.g428.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1-snap.683-T1
Valid prediction for snap_scaffold_1-snap.681-T1
Valid prediction for snap_scaffold_1-snap.702-T1
Valid prediction for CodingQuarry_transcript_2594-T1
Valid prediction for Augustus_model.g423.t1
Valid prediction for GlimmerHMM_glimmerT_539-T1
Valid prediction for snap_scaffold_1-snap.680-T1
Valid prediction for GlimmerHMM_glimmerT_544-T1
Valid prediction for Augustus_model.g427.t1
Valid prediction for snap_scaffold_1-snap.671-T1
Valid prediction for snap_scaffold_1-snap.685-T1
Valid prediction for GlimmerHMM_glimmerT_545-T1
Valid prediction for GlimmerHMM_glimmerT_537-T1
Valid prediction for GlimmerHMM_glimmerT_546-T1
Valid prediction for pasa_asmbl_212.p1
Valid prediction for snap_scaffold_1-snap.672-T1
Valid prediction for GlimmerHMM_glimmerT_540-T1
Valid prediction for GlimmerHMM_glimmerT_543-T1
Valid prediction for snap_scaffold_1-snap.679-T1
Valid prediction for GlimmerHMM_glimmerT_531-T1
Valid prediction for snap_scaffold_1-snap.682-T1
Valid prediction for snap_scaffold_1-snap.670-T1
Valid prediction for snap_scaffold_1-snap.705-T1
Valid prediction for snap_scaffold_1-snap.701-T1
Valid prediction for Augustus_model.g422.t1
Valid prediction for snap_scaffold_1-snap.696-T1
Valid prediction for GlimmerHMM_glimmerT_558-T1
Valid prediction for Augustus_model.g436.t1
Valid prediction for GlimmerHMM_glimmerT_551-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 169045, rend_intergenic: 165089  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 248063, rend_intergenic: 244534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 157883, rend_intergenic: 157880  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 255667
-exon list size: 282


building trellis

0.4    
0.7    
1.1    
1.4    
1.8    
2.1    
2.5    
2.8    
3.2    
3.5    
3.9    
4.2    
4.6    
4.9    
5.3    
5.6    
6.0    
6.3    
6.7    
7.0    
7.4    
7.7    
8.1    
8.5    
8.8    
9.2    
9.5    
9.9    
10.2    
10.6    
10.9    
11.3    
11.6    
12.0    
12.3    
12.7    
13.0    
13.4    
13.7    
14.1    
14.4    
14.8    
15.1    
15.5    
15.8    
16.2    
16.5    
16.9    
17.3    
17.6    
18.0    
18.3    
18.7    
19.0    
19.4    
19.7    
20.1    
20.4    
20.8    
21.1    
21.5    
21.8    
22.2    
22.5    
22.9    
23.2    
23.6    
23.9    
24.3    
24.6    
25.0    
25.4    
25.7    
26.1    
26.4    
26.8    
27.1    
27.5    
27.8    
28.2    
28.5    
28.9    
29.2    
29.6    
29.9    
30.3    
30.6    
31.0    
31.3    
31.7    
32.0    
32.4    
32.7    
33.1    
33.5    
33.8    
34.2    
34.5    
34.9    
35.2    
35.6    
35.9    
36.3    
36.6    
37.0    
37.3    
37.7    
38.0    
38.4    
38.7    
39.1    
39.4    
39.8    
40.1    
40.5    
40.8    
41.2    
41.5    
41.9    
42.3    
42.6    
43.0    
43.3    
43.7    
44.0    
44.4    
44.7    
45.1    
45.4    
45.8    
46.1    
46.5    
46.8    
47.2    
47.5    
47.9    
48.2    
48.6    
48.9    
49.3    
49.6    
50.0    
50.4    
50.7    
51.1    
51.4    
51.8    
52.1    
52.5    
52.8    
53.2    
53.5    
53.9    
54.2    
54.6    
54.9    
55.3    
55.6    
56.0    
56.3    
56.7    
57.0    
57.4    
57.7    
58.1    
58.5    
58.8    
59.2    
59.5    
59.9    
60.2    
60.6    
60.9    
61.3    
61.6    
62.0    
62.3    
62.7    
63.0    
63.4    
63.7    
64.1    
64.4    
64.8    
65.1    
65.5    
65.8    
66.2    
66.5    
66.9    
67.3    
67.6    
68.0    
68.3    
68.7    
69.0    
69.4    
69.7    
70.1    
70.4    
70.8    
71.1    
71.5    
71.8    
72.2    
72.5    
72.9    
73.2    
73.6    
73.9    
74.3    
74.6    
75.0    
75.4    
75.7    
76.1    
76.4    
76.8    
77.1    
77.5    
77.8    
78.2    
78.5    
78.9    
79.2    
79.6    
79.9    
80.3    
80.6    
81.0    
81.3    
81.7    
82.0    
82.4    
82.7    
83.1    
83.5    
83.8    
84.2    
84.5    
84.9    
85.2    
85.6    
85.9    
86.3    
86.6    
87.0    
87.3    
87.7    
88.0    
88.4    
88.7    
89.1    
89.4    
89.8    
90.1    
90.5    
90.8    
91.2    
91.5    
91.9    
92.3    
92.6    
93.0    
93.3    
93.7    
94.0    
94.4    
94.7    
95.1    
95.4    
95.8    
96.1    
96.5    
96.8    
97.2    
97.5    
97.9    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 169045, rend_intergenic: 165089  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 248063, rend_intergenic: 244534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 157883, rend_intergenic: 157880  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 23 predictions persist after filtering for low support