-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1/scaffold_1_3015985-3492447

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g336.t1
Couldn't classify 147089, 147255
Sorry, prediction pasa_asmbl_1573.p1 fails validation.
(GAA)	 TG	147089-147255	GT	AGG
(GGG)	 AG	149176-149335	GT	CAG
(CTT)	 AG	149491-149724	TT	GAT
-recovered pasa_asmbl_1573.p1, terminal, 149491, 149724
-recovered pasa_asmbl_1573.p1, internal, 149176, 149335
Valid prediction for Augustus_model.g339.t1
Couldn't classify 433670, 433790
Sorry, prediction pasa_asmbl_1598.p1 fails validation.
(CCT)	 CG	433670-433790	GT	AGG
(GTG)	 AG	434094-434108	GT	AGG
(AAC)	 AG	435688-435793	GT	AGG
(GTT)	 AG	436941-437014	GT	AGG
(AGC)	 AG	437575-437711	GT	ATG
(GCA)	 AG	438117-438207	GT	ATG
(ATG)	 AG	438708-438784	GT	ATG
(GGT)	 AG	438881-438917	GT	AGG
(GAC)	 AG	439063-439160	GT	AGG
(TGT)	 AG	439411-439530	GT	AGG
(GTG)	 AG	439716-439882	GT	AGG
(CGC)	 AG	440148-440283	GT	ACG
(ATG)	 AG	440680-440829	GT	AGG
(AAA)	 AG	441001-441094	GT	ATG
(ATG)	 AG	441475-441551	GT	ACG
(GGC)	 AG	442040-442174	GT	AAG
(GAG)	 AG	442799-442924	GT	GAG
(GAG)	 AG	443541-443692	GT	AGG
(TGC)	 AG	444432-444567	GT	TGG
(GAG)	 AG	445427-445501	GG	AGG
-recovered pasa_asmbl_1598.p1, initial, 438708, 438784
-recovered pasa_asmbl_1598.p1, initial, 440680, 440829
-recovered pasa_asmbl_1598.p1, initial, 441475, 441551
-recovered pasa_asmbl_1598.p1, terminal, 445427, 445501
-recovered pasa_asmbl_1598.p1, internal, 434094, 434108
-recovered pasa_asmbl_1598.p1, internal, 435688, 435793
-recovered pasa_asmbl_1598.p1, internal, 436941, 437014
-recovered pasa_asmbl_1598.p1, internal, 437575, 437711
-recovered pasa_asmbl_1598.p1, internal, 438117, 438207
-recovered pasa_asmbl_1598.p1, internal, 438708, 438784
-recovered pasa_asmbl_1598.p1, internal, 438881, 438917
-recovered pasa_asmbl_1598.p1, internal, 439063, 439160
-recovered pasa_asmbl_1598.p1, internal, 439411, 439530
-recovered pasa_asmbl_1598.p1, internal, 439716, 439882
-recovered pasa_asmbl_1598.p1, internal, 440148, 440283
-recovered pasa_asmbl_1598.p1, internal, 440680, 440829
-recovered pasa_asmbl_1598.p1, internal, 441001, 441094
-recovered pasa_asmbl_1598.p1, internal, 441475, 441551
-recovered pasa_asmbl_1598.p1, internal, 442040, 442174
-recovered pasa_asmbl_1598.p1, internal, 442799, 442924
-recovered pasa_asmbl_1598.p1, internal, 443541, 443692
-recovered pasa_asmbl_1598.p1, internal, 444432, 444567
Valid prediction for snap_scaffold_1-snap.504-T1
Valid prediction for GlimmerHMM_glimmerT_380-T1
Valid prediction for GlimmerHMM_glimmerT_399-T1
Valid prediction for snap_scaffold_1-snap.489-T1
Valid prediction for GlimmerHMM_glimmerT_373-T1
Valid prediction for snap_scaffold_1-snap.483-T1
Valid prediction for snap_scaffold_1-snap.513-T1
Valid prediction for GlimmerHMM_glimmerT_405-T1
Valid prediction for snap_scaffold_1-snap.478-T1
Valid prediction for GlimmerHMM_glimmerT_384-T1
Valid prediction for snap_scaffold_1-snap.493-T1
Valid prediction for snap_scaffold_1-snap.499-T1
Valid prediction for snap_scaffold_1-snap.481-T1
Valid prediction for GlimmerHMM_glimmerT_388-T1
Valid prediction for GlimmerHMM_glimmerT_393-T1
Valid prediction for HiQ_model.g328.t1
Valid prediction for GlimmerHMM_glimmerT_408-T1
Valid prediction for Augustus_model.g315.t1
Couldn't classify 238678, 238745
Sorry, prediction pasa_asmbl_1583.p1 fails validation.
(ATC)	 AG	238678-238745	GT	AGG
(TCT)	 AG	239290-239405	GT	AGG
(CTG)	 AG	239622-239699	GT	AGG
(AAG)	 AG	239927-239993	GT	CTG
(GTC)	 AG	240214-240314	GT	TGG
(AGA)	 AG	240581-240672	GT	TGG
(TTT)	 AG	240859-240917	GT	AGG
(GCA)	 AG	241154-241223	GT	AAG
(GAA)	 AG	241316-241396	GT	AGG
(GCC)	 AG	241733-241828	CC	AAC
-recovered pasa_asmbl_1583.p1, terminal, 241733, 241828
-recovered pasa_asmbl_1583.p1, internal, 238678, 238745
-recovered pasa_asmbl_1583.p1, internal, 239290, 239405
-recovered pasa_asmbl_1583.p1, internal, 239622, 239699
-recovered pasa_asmbl_1583.p1, internal, 239927, 239993
-recovered pasa_asmbl_1583.p1, internal, 240214, 240314
-recovered pasa_asmbl_1583.p1, internal, 240581, 240672
-recovered pasa_asmbl_1583.p1, internal, 240859, 240917
-recovered pasa_asmbl_1583.p1, internal, 241154, 241223
-recovered pasa_asmbl_1583.p1, internal, 241316, 241396
Valid prediction for GlimmerHMM_glimmerT_400-T1
Valid prediction for GlimmerHMM_glimmerT_371-T1
Valid prediction for CodingQuarry_transcript_2563-T1
Valid prediction for GlimmerHMM_glimmerT_377-T1
Valid prediction for Augustus_model.g310.t1
Valid prediction for snap_scaffold_1-snap.517-T1
Valid prediction for GlimmerHMM_glimmerT_391-T1
Valid prediction for GlimmerHMM_glimmerT_381-T1
Valid prediction for GlimmerHMM_glimmerT_406-T1
Valid prediction for snap_scaffold_1-snap.490-T1
Valid prediction for Augustus_model.g329.t1
Valid prediction for snap_scaffold_1-snap.484-T1
Valid prediction for HiQ_model.g324.t1
Valid prediction for snap_scaffold_1-snap.516-T1
Couldn't classify 278296, 278595
Sorry, prediction pasa_asmbl_1593.p1 fails validation.
(CGC)	 AT	278296-278595	GT	CAG
(CTA)	 AG	278705-278875	CT	GAC
-recovered pasa_asmbl_1593.p1, terminal, 278705, 278875
Valid prediction for snap_scaffold_1-snap.500-T1
Valid prediction for GlimmerHMM_glimmerT_407-T1
Valid prediction for snap_scaffold_1-snap.492-T1
Valid prediction for CodingQuarry_transcript_2557-T1
Valid prediction for Augustus_model.g320.t1
Couldn't classify 154113, 154289
Sorry, prediction pasa_asmbl_1575.p1 fails validation.
(ATG)	 AG	150358-150464	GT	AGG
(GAT)	 AG	150655-150844	GT	AAG
(AGA)	 AG	150936-151079	GT	TGG
(GTC)	 AG	151278-151505	GT	TGG
(GGT)	 AG	151712-151941	GT	AGG
(ATT)	 AG	153852-153939	GT	AGG
(GAT)	 AG	154113-154289	TA	CGT
-recovered pasa_asmbl_1575.p1, initial, 150358, 150464
add_exon() Sorry, pasa_asmbl_1575.p1 150358-150464-terminal-2 is invalid.
-recovered pasa_asmbl_1575.p1, terminal, 150358, 150464
-recovered pasa_asmbl_1575.p1, internal, 150358, 150464
-recovered pasa_asmbl_1575.p1, internal, 150655, 150844
-recovered pasa_asmbl_1575.p1, internal, 150936, 151079
-recovered pasa_asmbl_1575.p1, internal, 151278, 151505
-recovered pasa_asmbl_1575.p1, internal, 151712, 151941
-recovered pasa_asmbl_1575.p1, internal, 153852, 153939
Valid prediction for CodingQuarry_transcript_2558-T1
Valid prediction for snap_scaffold_1-snap.476-T1
Valid prediction for Augustus_model.g331.t1
Valid prediction for snap_scaffold_1-snap.514-T1
Valid prediction for GlimmerHMM_glimmerT_397-T1
Valid prediction for GlimmerHMM_glimmerT_372-T1
Couldn't classify 2514, 2564
Couldn't classify 5024, 5088
Sorry, prediction pasa_asmbl_1567.p1 fails validation.
(TCC)	 AC	2514-2564	GT	TGG
(ACC)	 AG	3103-3262	GT	GGG
(AGT)	 AG	3523-3626	GC	AGG
(GTG)	 AG	3859-3955	GT	TGG
(AGA)	 AG	5024-5088	GA	CAG
-recovered pasa_asmbl_1567.p1, internal, 3103, 3262
-recovered pasa_asmbl_1567.p1, internal, 3523, 3626
-recovered pasa_asmbl_1567.p1, internal, 3859, 3955
Valid prediction for HiQ_model.g338.t1
Valid prediction for GlimmerHMM_glimmerT_387-T1
Valid prediction for pasa_asmbl_1577.p1
Valid prediction for snap_scaffold_1-snap.477-T1
Valid prediction for CodingQuarry_transcript_2562-T1
Valid prediction for GlimmerHMM_glimmerT_374-T1
Valid prediction for Augustus_model.g312.t1
Valid prediction for snap_scaffold_1-snap.502-T1
Couldn't classify 414963, 415022
Sorry, prediction pasa_asmbl_1594.p1 fails validation.
(CAA)	 TA	414963-415022	GT	AGG
(GGC)	 AG	415453-415629	GT	AGG
(GCA)	 AG	415918-416038	GT	AGG
(GAA)	 AG	416289-416349	GT	AGG
(GCG)	 AG	416440-416572	GT	AGG
(AGC)	 AG	418096-418229	GT	ATG
(GAA)	 AG	418421-418523	GT	AGG
(CTG)	 AG	418678-418824	GT	CTG
(GGG)	 AG	419088-419182	GT	AAG
(CCT)	 AG	419318-419378	GT	AGG
(GTA)	 AG	420546-420635	AC	AAA
add_exon() Sorry, pasa_asmbl_1594.p1 416289-416349-terminal-3 is invalid.
-recovered pasa_asmbl_1594.p1, terminal, 416289, 416349
-recovered pasa_asmbl_1594.p1, terminal, 420546, 420635
-recovered pasa_asmbl_1594.p1, internal, 415453, 415629
-recovered pasa_asmbl_1594.p1, internal, 415918, 416038
-recovered pasa_asmbl_1594.p1, internal, 416289, 416349
-recovered pasa_asmbl_1594.p1, internal, 416440, 416572
-recovered pasa_asmbl_1594.p1, internal, 418096, 418229
-recovered pasa_asmbl_1594.p1, internal, 418421, 418523
-recovered pasa_asmbl_1594.p1, internal, 418678, 418824
-recovered pasa_asmbl_1594.p1, internal, 419088, 419182
-recovered pasa_asmbl_1594.p1, internal, 419318, 419378
Valid prediction for pasa_asmbl_1601.p1
Valid prediction for snap_scaffold_1-snap.480-T1
Valid prediction for snap_scaffold_1-snap.497-T1
Valid prediction for snap_scaffold_1-snap.482-T1
Valid prediction for GlimmerHMM_glimmerT_375-T1
Valid prediction for Augustus_model.g337.t1
Valid prediction for snap_scaffold_1-snap.515-T1
Valid prediction for Augustus_model.g311.t1
Valid prediction for Augustus_model.g319.t1
Valid prediction for Augustus_model.g327.t1
Couldn't classify 260448, 260533
Sorry, prediction pasa_asmbl_1585.p1 fails validation.
(ATG)	 CC	258093-258214	GT	TGG
(GGG)	 AG	258397-258511	GT	AGG
(AGA)	 AG	258850-258957	GT	AGG
(AAC)	 AG	259080-259163	GT	ATG
(CCT)	 AG	259335-259695	GT	AGG
(ATA)	 AG	259883-259930	GT	GGG
(GTA)	 AG	260448-260533	GT	AGG
-recovered pasa_asmbl_1585.p1, initial, 258093, 258214
-recovered pasa_asmbl_1585.p1, internal, 258397, 258511
-recovered pasa_asmbl_1585.p1, internal, 258850, 258957
-recovered pasa_asmbl_1585.p1, internal, 259080, 259163
-recovered pasa_asmbl_1585.p1, internal, 259335, 259695
-recovered pasa_asmbl_1585.p1, internal, 259883, 259930
-recovered pasa_asmbl_1585.p1, internal, 260448, 260533
Valid prediction for snap_scaffold_1-snap.491-T1
Valid prediction for Augustus_model.g313.t1
Valid prediction for HiQ_model.g321.t1
Valid prediction for GlimmerHMM_glimmerT_392-T1
Valid prediction for snap_scaffold_1-snap.512-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1-snap.495-T1
Valid prediction for snap_scaffold_1-snap.511-T1
Valid prediction for Augustus_model.g334.t1
Valid prediction for GlimmerHMM_glimmerT_382-T1
Valid prediction for Augustus_model.g333.t1
Valid prediction for snap_scaffold_1-snap.485-T1
Couldn't classify 68051, 68101
Sorry, prediction pasa_asmbl_1265.p1 fails validation.
(ATG)	 AC	62876-62891	GT	GAG
(AGC)	 AG	63739-63860	GT	ATG
(AAT)	 AG	63979-64069	GT	AGG
(ATG)	 AG	64185-64332	GT	AAG
(GTT)	 AG	64890-65070	GT	ACG
(GAC)	 AG	66328-66405	GT	AGG
(ATC)	 AG	66740-66820	GT	CTG
(GTC)	 AG	67302-67535	GT	AGG
(GGT)	 AG	68051-68101	AC	GGA
-recovered pasa_asmbl_1265.p1, initial, 62876, 62891
add_exon() Sorry, pasa_asmbl_1265.p1 64185-64332-initial-1 is invalid.
-recovered pasa_asmbl_1265.p1, initial, 64185, 64332
-recovered pasa_asmbl_1265.p1, internal, 63739, 63860
-recovered pasa_asmbl_1265.p1, internal, 63979, 64069
-recovered pasa_asmbl_1265.p1, internal, 64185, 64332
-recovered pasa_asmbl_1265.p1, internal, 64890, 65070
-recovered pasa_asmbl_1265.p1, internal, 66328, 66405
-recovered pasa_asmbl_1265.p1, internal, 66740, 66820
-recovered pasa_asmbl_1265.p1, internal, 67302, 67535
Couldn't classify 343436, 343546
Couldn't classify 344835, 345021
Sorry, prediction pasa_asmbl_138.p1 fails validation.
(AAG)	 AA	343436-343546	GT	AGG
(CTG)	 AG	343709-343818	GT	AGG
(CCA)	 AG	344835-345021	CC	GGC
-recovered pasa_asmbl_138.p1, internal, 343709, 343818
Valid prediction for CodingQuarry_transcript_2559-T1
Valid prediction for GlimmerHMM_glimmerT_385-T1
Valid prediction for GlimmerHMM_glimmerT_389-T1
Valid prediction for snap_scaffold_1-snap.506-T1
Valid prediction for Augustus_model.g317.t1
Valid prediction for Augustus_model.g323.t1
Valid prediction for GlimmerHMM_glimmerT_386-T1
Valid prediction for GlimmerHMM_glimmerT_401-T1
Couldn't classify 345323, 345421
Sorry, prediction pasa_asmbl_137.p1 fails validation.
(CTG)	 AA	345323-345421	GT	AGG
(TGT)	 AG	345704-345839	GT	AGG
(TGG)	 AG	345918-346020	GT	AGG
(GGT)	 AG	346312-346423	GT	AAG
(GAT)	 AG	346786-346876	GT	AGG
(GGG)	 AG	347031-347104	AT	GAA
-recovered pasa_asmbl_137.p1, terminal, 347031, 347104
-recovered pasa_asmbl_137.p1, internal, 345704, 345839
-recovered pasa_asmbl_137.p1, internal, 345918, 346020
-recovered pasa_asmbl_137.p1, internal, 346312, 346423
-recovered pasa_asmbl_137.p1, internal, 346786, 346876
Valid prediction for snap_scaffold_1-snap.508-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_394-T1
Valid prediction for GlimmerHMM_glimmerT_390-T1
Valid prediction for GlimmerHMM_glimmerT_398-T1
Couldn't classify 359903, 360003
Sorry, prediction pasa_asmbl_135.p1 fails validation.
(GAA)	 CA	359903-360003	GT	AGG
(GGT)	 AG	360218-360350	GT	GGG
(GTG)	 AG	360511-360625	GT	AGG
(TGA)	 AG	360775-360862	GT	ATG
(ATT)	 AG	360980-361055	GT	AGG
-recovered pasa_asmbl_135.p1, terminal, 360980, 361055
-recovered pasa_asmbl_135.p1, internal, 360218, 360350
-recovered pasa_asmbl_135.p1, internal, 360511, 360625
-recovered pasa_asmbl_135.p1, internal, 360775, 360862
-recovered pasa_asmbl_135.p1, internal, 360980, 361055
Valid prediction for GlimmerHMM_glimmerT_404-T1
Valid prediction for GlimmerHMM_glimmerT_376-T1
Valid prediction for snap_scaffold_1-snap.501-T1
Couldn't classify 340484, 340616
Couldn't classify 341935, 341964
Sorry, prediction pasa_asmbl_139.p1 fails validation.
(CTT)	 CC	340484-340616	GT	AGG
(AGT)	 AG	341579-341727	GT	AGG
(GCA)	 AG	341935-341964	AA	GGA
-recovered pasa_asmbl_139.p1, internal, 341579, 341727
Couldn't classify 68051, 68143
Couldn't classify 68446, 68597
Sorry, prediction CodingQuarry_transcript_2561-T1 fails validation.
(ATG)	 AC	62876-62891	GT	GAG
(AGC)	 AG	63739-63860	GT	ATG
(AAT)	 AG	63979-64069	GT	AGG
(ATG)	 AG	64185-64332	GT	AAG
(GTT)	 AG	64890-65070	GT	ACG
(GAC)	 AG	66328-66405	GT	AGG
(ATC)	 AG	66740-66820	GT	CTG
(GTC)	 AG	67302-67535	GT	AGG
(GGT)	 AG	68051-68143	CT	TCC
(TGG)	 AC	68446-68597	GT	AGG
(TGC)	 AG	68687-68774	GT	AGG
(GTG)	 AG	68938-69048	GT	CTG
(GAT)	 AG	69254-69427	GT	CGG
(GTC)	 AG	69540-69684	GT	AGG
(ACT)	 AG	69930-70036	TC	GAT
-recovered CodingQuarry_transcript_2561-T1, initial, 62876, 62891
add_exon() Sorry, CodingQuarry_transcript_2561-T1 64185-64332-initial-1 is invalid.
-recovered CodingQuarry_transcript_2561-T1, initial, 64185, 64332
-recovered CodingQuarry_transcript_2561-T1, terminal, 69930, 70036
-recovered CodingQuarry_transcript_2561-T1, internal, 63739, 63860
-recovered CodingQuarry_transcript_2561-T1, internal, 63979, 64069
-recovered CodingQuarry_transcript_2561-T1, internal, 64185, 64332
-recovered CodingQuarry_transcript_2561-T1, internal, 64890, 65070
-recovered CodingQuarry_transcript_2561-T1, internal, 66328, 66405
-recovered CodingQuarry_transcript_2561-T1, internal, 66740, 66820
-recovered CodingQuarry_transcript_2561-T1, internal, 67302, 67535
-recovered CodingQuarry_transcript_2561-T1, internal, 68687, 68774
-recovered CodingQuarry_transcript_2561-T1, internal, 68938, 69048
-recovered CodingQuarry_transcript_2561-T1, internal, 69254, 69427
-recovered CodingQuarry_transcript_2561-T1, internal, 69540, 69684
Valid prediction for GlimmerHMM_glimmerT_402-T1
Valid prediction for HiQ_model.g335.t1
Valid prediction for snap_scaffold_1-snap.503-T1
Valid prediction for Augustus_model.g325.t1
Valid prediction for CodingQuarry_transcript_2560-T1
Valid prediction for snap_scaffold_1-snap.507-T1
Valid prediction for GlimmerHMM_glimmerT_379-T1
Valid prediction for snap_scaffold_1-snap.488-T1
Valid prediction for GlimmerHMM_glimmerT_378-T1
Valid prediction for snap_scaffold_1-snap.487-T1
Valid prediction for snap_scaffold_1-snap.509-T1
Valid prediction for snap_scaffold_1-snap.486-T1
Valid prediction for Augustus_model.g316.t1
Valid prediction for pasa_asmbl_142.p1
Valid prediction for Augustus_model.g326.t1
Valid prediction for Augustus_model.g330.t1
Valid prediction for snap_scaffold_1-snap.498-T1
Valid prediction for snap_scaffold_1-snap.510-T1
Valid prediction for Augustus_model.g314.t1
Valid prediction for snap_scaffold_1-snap.505-T1
Valid prediction for CodingQuarry_transcript_2555-T1
Valid prediction for snap_scaffold_1-snap.496-T1
Valid prediction for GlimmerHMM_glimmerT_383-T1
Valid prediction for Augustus_model.g332.t1
Valid prediction for GlimmerHMM_glimmerT_395-T1
Valid prediction for snap_scaffold_1-snap.479-T1
Valid prediction for CodingQuarry_transcript_2556-T1
Valid prediction for GlimmerHMM_glimmerT_396-T1
Valid prediction for Augustus_model.g322.t1
Valid prediction for Augustus_model.g318.t1
Valid prediction for GlimmerHMM_glimmerT_403-T1
Valid prediction for snap_scaffold_1-snap.494-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 476463
-exon list size: 458


building trellis

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9.3    
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19.8    
20.0    
20.2    
20.4    
20.7    
20.9    
21.1    
21.3    
21.5    
21.7    
22.0    
22.2    
22.4    
22.6    
22.8    
23.0    
23.3    
23.5    
23.7    
23.9    
24.1    
24.3    
24.6    
24.8    
25.0    
25.2    
25.4    
25.7    
25.9    
26.1    
26.3    
26.5    
26.7    
27.0    
27.2    
27.4    
27.6    
27.8    
28.0    
28.3    
28.5    
28.7    
28.9    
29.1    
29.3    
29.6    
29.8    
30.0    
30.2    
30.4    
30.7    
30.9    
31.1    
31.3    
31.5    
31.7    
32.0    
32.2    
32.4    
32.6    
32.8    
33.0    
33.3    
33.5    
33.7    
33.9    
34.1    
34.3    
34.6    
34.8    
35.0    
35.2    
35.4    
35.7    
35.9    
36.1    
36.3    
36.5    
36.7    
37.0    
37.2    
37.4    
37.6    
37.8    
38.0    
38.3    
38.5    
38.7    
38.9    
39.1    
39.3    
39.6    
39.8    
40.0    
40.2    
40.4    
40.7    
40.9    
41.1    
41.3    
41.5    
41.7    
42.0    
42.2    
42.4    
42.6    
42.8    
43.0    
43.3    
43.5    
43.7    
43.9    
44.1    
44.3    
44.6    
44.8    
45.0    
45.2    
45.4    
45.7    
45.9    
46.1    
46.3    
46.5    
46.7    
47.0    
47.2    
47.4    
47.6    
47.8    
48.0    
48.3    
48.5    
48.7    
48.9    
49.1    
49.3    
49.6    
49.8    
50.0    
50.2    
50.4    
50.7    
50.9    
51.1    
51.3    
51.5    
51.7    
52.0    
52.2    
52.4    
52.6    
52.8    
53.0    
53.3    
53.5    
53.7    
53.9    
54.1    
54.3    
54.6    
54.8    
55.0    
55.2    
55.4    
55.7    
55.9    
56.1    
56.3    
56.5    
56.7    
57.0    
57.2    
57.4    
57.6    
57.8    
58.0    
58.3    
58.5    
58.7    
58.9    
59.1    
59.3    
59.6    
59.8    
60.0    
60.2    
60.4    
60.7    
60.9    
61.1    
61.3    
61.5    
61.7    
62.0    
62.2    
62.4    
62.6    
62.8    
63.0    
63.3    
63.5    
63.7    
63.9    
64.1    
64.3    
64.6    
64.8    
65.0    
65.2    
65.4    
65.7    
65.9    
66.1    
66.3    
66.5    
66.7    
67.0    
67.2    
67.4    
67.6    
67.8    
68.0    
68.3    
68.5    
68.7    
68.9    
69.1    
69.3    
69.6    
69.8    
70.0    
70.2    
70.4    
70.7    
70.9    
71.1    
71.3    
71.5    
71.7    
72.0    
72.2    
72.4    
72.6    
72.8    
73.0    
73.3    
73.5    
73.7    
73.9    
74.1    
74.3    
74.6    
74.8    
75.0    
75.2    
75.4    
75.7    
75.9    
76.1    
76.3    
76.5    
76.7    
77.0    
77.2    
77.4    
77.6    
77.8    
78.0    
78.3    
78.5    
78.7    
78.9    
79.1    
79.3    
79.6    
79.8    
80.0    
80.2    
80.4    
80.7    
80.9    
81.1    
81.3    
81.5    
81.7    
82.0    
82.2    
82.4    
82.6    
82.8    
83.0    
83.3    
83.5    
83.7    
83.9    
84.1    
84.3    
84.6    
84.8    
85.0    
85.2    
85.4    
85.7    
85.9    
86.1    
86.3    
86.5    
86.7    
87.0    
87.2    
87.4    
87.6    
87.8    
88.0    
88.3    
88.5    
88.7    
88.9    
89.1    
89.3    
89.6    
89.8    
90.0    
90.2    
90.4    
90.7    
90.9    
91.1    
91.3    
91.5    
91.7    
92.0    
92.2    
92.4    
92.6    
92.8    
93.0    
93.3    
93.5    
93.7    
93.9    
94.1    
94.3    
94.6    
94.8    
95.0    
95.2    
95.4    
95.7    
95.9    
96.1    
96.3    
96.5    
96.7    
97.0    
97.2    
97.4    
97.6    
97.8    
98.0    
98.3    
98.5    
98.7    
98.9    
99.1    
99.3    
99.6    
99.8    
-found 42 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 39 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 457565 - 476463
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 457565 - 471188
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 460573 - 471188
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support