-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1/scaffold_1_22217836-22319106

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1-snap.4214-T1
Valid prediction for GlimmerHMM_glimmerT_2968-T1
Valid prediction for snap_scaffold_1-snap.4197-T1
Valid prediction for snap_scaffold_1-snap.4216-T1
Valid prediction for snap_scaffold_1-snap.4207-T1
Valid prediction for snap_scaffold_1-snap.4203-T1
Valid prediction for snap_scaffold_1-snap.4210-T1
Valid prediction for snap_scaffold_1-snap.4204-T1
Valid prediction for snap_scaffold_1-snap.4212-T1
Valid prediction for GlimmerHMM_glimmerT_2969-T1
Valid prediction for snap_scaffold_1-snap.4208-T1
Valid prediction for snap_scaffold_1-snap.4200-T1
Valid prediction for GlimmerHMM_glimmerT_2975-T1
Valid prediction for GlimmerHMM_glimmerT_2966-T1
Valid prediction for snap_scaffold_1-snap.4213-T1
Valid prediction for GlimmerHMM_glimmerT_2972-T1
Valid prediction for snap_scaffold_1-snap.4215-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1-snap.4201-T1
Valid prediction for snap_scaffold_1-snap.4209-T1
Valid prediction for GlimmerHMM_glimmerT_2970-T1
Valid prediction for snap_scaffold_1-snap.4202-T1
Valid prediction for snap_scaffold_1-snap.4196-T1
Valid prediction for GlimmerHMM_glimmerT_2976-T1
Valid prediction for GlimmerHMM_glimmerT_2967-T1
Valid prediction for snap_scaffold_1-snap.4198-T1
Valid prediction for GlimmerHMM_glimmerT_2973-T1
Valid prediction for GlimmerHMM_glimmerT_2974-T1
Valid prediction for GlimmerHMM_glimmerT_2971-T1
Valid prediction for snap_scaffold_1-snap.4211-T1
Valid prediction for snap_scaffold_1-snap.4205-T1
Valid prediction for snap_scaffold_1-snap.4199-T1
Valid prediction for snap_scaffold_1-snap.4206-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10118, rend_intergenic: 2922  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23587, rend_intergenic: 18225  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37813, rend_intergenic: 34386  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42636, rend_intergenic: 37833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61008, rend_intergenic: 44501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68248, rend_intergenic: 62572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71135, rend_intergenic: 69008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75427, rend_intergenic: 74006  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 101271
-exon list size: 121


building trellis

0.8    
1.6    
2.4    
3.3    
4.1    
4.9    
5.7    
6.5    
7.3    
8.1    
8.9    
9.8    
10.6    
11.4    
12.2    
13.0    
13.8    
14.6    
15.4    
16.3    
17.1    
17.9    
18.7    
19.5    
20.3    
21.1    
22.0    
22.8    
23.6    
24.4    
25.2    
26.0    
26.8    
27.6    
28.5    
29.3    
30.1    
30.9    
31.7    
32.5    
33.3    
34.1    
35.0    
35.8    
36.6    
37.4    
38.2    
39.0    
39.8    
40.7    
41.5    
42.3    
43.1    
43.9    
44.7    
45.5    
46.3    
47.2    
48.0    
48.8    
49.6    
50.4    
51.2    
52.0    
52.8    
53.7    
54.5    
55.3    
56.1    
56.9    
57.7    
58.5    
59.3    
60.2    
61.0    
61.8    
62.6    
63.4    
64.2    
65.0    
65.9    
66.7    
67.5    
68.3    
69.1    
69.9    
70.7    
71.5    
72.4    
73.2    
74.0    
74.8    
75.6    
76.4    
77.2    
78.0    
78.9    
79.7    
80.5    
81.3    
82.1    
82.9    
83.7    
84.6    
85.4    
86.2    
87.0    
87.8    
88.6    
89.4    
90.2    
91.1    
91.9    
92.7    
93.5    
94.3    
95.1    
95.9    
96.7    
97.6    
98.4    
99.2    
-found 13 predictions from path traversal
Error with prediction: snap lend_intergenic: 10118, rend_intergenic: 2922  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23587, rend_intergenic: 18225  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37813, rend_intergenic: 34386  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42636, rend_intergenic: 37833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61008, rend_intergenic: 44501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68248, rend_intergenic: 62572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71135, rend_intergenic: 69008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75427, rend_intergenic: 74006  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support