-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1/scaffold_1_21003074-21135519

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_2819-T1
Valid prediction for snap_scaffold_1-snap.3947-T1
Valid prediction for GlimmerHMM_glimmerT_2826-T1
Valid prediction for snap_scaffold_1-snap.3961-T1
Valid prediction for snap_scaffold_1-snap.3945-T1
Valid prediction for GlimmerHMM_glimmerT_2828-T1
Valid prediction for snap_scaffold_1-snap.3941-T1
Valid prediction for snap_scaffold_1-snap.3959-T1
Valid prediction for snap_scaffold_1-snap.3966-T1
Valid prediction for GlimmerHMM_glimmerT_2830-T1
Valid prediction for snap_scaffold_1-snap.3933-T1
Valid prediction for GlimmerHMM_glimmerT_2831-T1
Valid prediction for snap_scaffold_1-snap.3943-T1
Valid prediction for snap_scaffold_1-snap.3953-T1
Valid prediction for snap_scaffold_1-snap.3944-T1
Valid prediction for snap_scaffold_1-snap.3958-T1
Valid prediction for snap_scaffold_1-snap.3936-T1
Valid prediction for snap_scaffold_1-snap.3952-T1
Valid prediction for snap_scaffold_1-snap.3956-T1
Valid prediction for GlimmerHMM_glimmerT_2815-T1
Valid prediction for GlimmerHMM_glimmerT_2818-T1
Valid prediction for snap_scaffold_1-snap.3963-T1
Valid prediction for GlimmerHMM_glimmerT_2825-T1
Valid prediction for snap_scaffold_1-snap.3965-T1
Sorry, intron length (7) is less than minimum required (10)
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_1-snap.3962-T1
Valid prediction for snap_scaffold_1-snap.3939-T1
Valid prediction for snap_scaffold_1-snap.3938-T1
Valid prediction for GlimmerHMM_glimmerT_2816-T1
Valid prediction for snap_scaffold_1-snap.3934-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1-snap.3950-T1
Valid prediction for snap_scaffold_1-snap.3955-T1
Valid prediction for snap_scaffold_1-snap.3937-T1
Valid prediction for snap_scaffold_1-snap.3960-T1
Valid prediction for GlimmerHMM_glimmerT_2832-T1
Valid prediction for Augustus_model.g1998.t1
Valid prediction for GlimmerHMM_glimmerT_2834-T1
Valid prediction for snap_scaffold_1-snap.3957-T1
Valid prediction for Augustus_model.g1999.t1
Valid prediction for GlimmerHMM_glimmerT_2823-T1
Valid prediction for Augustus_model.g1995.t1
Valid prediction for snap_scaffold_1-snap.3967-T1
Valid prediction for snap_scaffold_1-snap.3948-T1
Valid prediction for GlimmerHMM_glimmerT_2822-T1
Valid prediction for GlimmerHMM_glimmerT_2827-T1
Valid prediction for GlimmerHMM_glimmerT_2833-T1
Valid prediction for snap_scaffold_1-snap.3942-T1
Valid prediction for snap_scaffold_1-snap.3951-T1
Valid prediction for GlimmerHMM_glimmerT_2817-T1
Valid prediction for snap_scaffold_1-snap.3954-T1
Valid prediction for snap_scaffold_1-snap.3968-T1
Valid prediction for snap_scaffold_1-snap.3940-T1
Valid prediction for snap_scaffold_1-snap.3964-T1
Valid prediction for GlimmerHMM_glimmerT_2820-T1
Valid prediction for snap_scaffold_1-snap.3946-T1
Valid prediction for Augustus_model.g1996.t1
Valid prediction for GlimmerHMM_glimmerT_2829-T1
Valid prediction for snap_scaffold_1-snap.3935-T1
Valid prediction for GlimmerHMM_glimmerT_2821-T1
Valid prediction for GlimmerHMM_glimmerT_2824-T1
Valid prediction for Augustus_model.g1997.t1
Valid prediction for snap_scaffold_1-snap.3949-T1
Valid prediction for Augustus_model.g1994.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 28845, rend_intergenic: 24701  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35654, rend_intergenic: 33223  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41179, rend_intergenic: 36049  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50224, rend_intergenic: 43362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52748, rend_intergenic: 50601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53762, rend_intergenic: 53447  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59403, rend_intergenic: 56190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80380, rend_intergenic: 75871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86736, rend_intergenic: 81096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92090, rend_intergenic: 90763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101779, rend_intergenic: 97422  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110512, rend_intergenic: 103108  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113728, rend_intergenic: 110642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123228, rend_intergenic: 114558  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123925, rend_intergenic: 123334  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 132446
-exon list size: 218


building trellis

0.5    
0.9    
1.4    
1.8    
2.3    
2.7    
3.2    
3.6    
4.1    
4.5    
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5.5    
5.9    
6.4    
6.8    
7.3    
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8.2    
8.6    
9.1    
9.5    
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10.5    
10.9    
11.4    
11.8    
12.3    
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13.6    
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15.5    
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16.4    
16.8    
17.3    
17.7    
18.2    
18.6    
19.1    
19.5    
20.0    
20.5    
20.9    
21.4    
21.8    
22.3    
22.7    
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23.6    
24.1    
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25.5    
25.9    
26.4    
26.8    
27.3    
27.7    
28.2    
28.6    
29.1    
29.5    
30.0    
30.5    
30.9    
31.4    
31.8    
32.3    
32.7    
33.2    
33.6    
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34.5    
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35.5    
35.9    
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38.6    
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40.5    
40.9    
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43.6    
44.1    
44.5    
45.0    
45.5    
45.9    
46.4    
46.8    
47.3    
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48.2    
48.6    
49.1    
49.5    
50.0    
50.5    
50.9    
51.4    
51.8    
52.3    
52.7    
53.2    
53.6    
54.1    
54.5    
55.0    
55.5    
55.9    
56.4    
56.8    
57.3    
57.7    
58.2    
58.6    
59.1    
59.5    
60.0    
60.5    
60.9    
61.4    
61.8    
62.3    
62.7    
63.2    
63.6    
64.1    
64.5    
65.0    
65.5    
65.9    
66.4    
66.8    
67.3    
67.7    
68.2    
68.6    
69.1    
69.5    
70.0    
70.5    
70.9    
71.4    
71.8    
72.3    
72.7    
73.2    
73.6    
74.1    
74.5    
75.0    
75.5    
75.9    
76.4    
76.8    
77.3    
77.7    
78.2    
78.6    
79.1    
79.5    
80.0    
80.5    
80.9    
81.4    
81.8    
82.3    
82.7    
83.2    
83.6    
84.1    
84.5    
85.0    
85.5    
85.9    
86.4    
86.8    
87.3    
87.7    
88.2    
88.6    
89.1    
89.5    
90.0    
90.5    
90.9    
91.4    
91.8    
92.3    
92.7    
93.2    
93.6    
94.1    
94.5    
95.0    
95.5    
95.9    
96.4    
96.8    
97.3    
97.7    
98.2    
98.6    
99.1    
99.5    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 28845, rend_intergenic: 24701  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35654, rend_intergenic: 33223  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41179, rend_intergenic: 36049  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50224, rend_intergenic: 43362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52748, rend_intergenic: 50601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53762, rend_intergenic: 53447  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59403, rend_intergenic: 56190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80380, rend_intergenic: 75871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86736, rend_intergenic: 81096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92090, rend_intergenic: 90763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101779, rend_intergenic: 97422  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110512, rend_intergenic: 103108  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113728, rend_intergenic: 110642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123228, rend_intergenic: 114558  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123925, rend_intergenic: 123334  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support