-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1/scaffold_1_17201446-17335714

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_2300-T1
Valid prediction for snap_scaffold_1-snap.3099-T1
Valid prediction for snap_scaffold_1-snap.3100-T1
Valid prediction for GlimmerHMM_glimmerT_2293-T1
Valid prediction for snap_scaffold_1-snap.3084-T1
Valid prediction for snap_scaffold_1-snap.3093-T1
Valid prediction for snap_scaffold_1-snap.3109-T1
Valid prediction for GlimmerHMM_glimmerT_2294-T1
Valid prediction for pasa_asmbl_2519.p1
Valid prediction for GlimmerHMM_glimmerT_2301-T1
Valid prediction for Augustus_model.g1692.t1
Valid prediction for Augustus_model.g1691.t1
Valid prediction for snap_scaffold_1-snap.3121-T1
Valid prediction for snap_scaffold_1-snap.3089-T1
Valid prediction for snap_scaffold_1-snap.3082-T1
Valid prediction for snap_scaffold_1-snap.3104-T1
Valid prediction for snap_scaffold_1-snap.3115-T1
Valid prediction for GlimmerHMM_glimmerT_2305-T1
Valid prediction for Augustus_model.g1688.t1
Valid prediction for snap_scaffold_1-snap.3096-T1
Valid prediction for snap_scaffold_1-snap.3116-T1
Valid prediction for snap_scaffold_1-snap.3120-T1
Valid prediction for GlimmerHMM_glimmerT_2292-T1
Valid prediction for Augustus_model.g1693.t1
Valid prediction for Augustus_model.g1689.t1
Valid prediction for GlimmerHMM_glimmerT_2307-T1
Valid prediction for GlimmerHMM_glimmerT_2284-T1
Valid prediction for Augustus_model.g1686.t1
Valid prediction for GlimmerHMM_glimmerT_2288-T1
Valid prediction for GlimmerHMM_glimmerT_2291-T1
Valid prediction for snap_scaffold_1-snap.3097-T1
Valid prediction for GlimmerHMM_glimmerT_2290-T1
Valid prediction for GlimmerHMM_glimmerT_2297-T1
Valid prediction for snap_scaffold_1-snap.3095-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1-snap.3103-T1
Valid prediction for snap_scaffold_1-snap.3094-T1
Valid prediction for snap_scaffold_1-snap.3081-T1
Valid prediction for snap_scaffold_1-snap.3118-T1
Valid prediction for snap_scaffold_1-snap.3113-T1
Valid prediction for GlimmerHMM_glimmerT_2303-T1
Valid prediction for Augustus_model.g1690.t1
Valid prediction for GlimmerHMM_glimmerT_2298-T1
Valid prediction for snap_scaffold_1-snap.3086-T1
Valid prediction for snap_scaffold_1-snap.3091-T1
Valid prediction for GlimmerHMM_glimmerT_2287-T1
Couldn't classify 92505, 92879
Sorry, prediction pasa_asmbl_2518.p1 fails validation.
(CAT)	 GC	92505-92879	TG	CCT
Valid prediction for Augustus_model.g1687.t1
Valid prediction for snap_scaffold_1-snap.3092-T1
Valid prediction for GlimmerHMM_glimmerT_2304-T1
Valid prediction for snap_scaffold_1-snap.3107-T1
Valid prediction for snap_scaffold_1-snap.3112-T1
Valid prediction for GlimmerHMM_glimmerT_2286-T1
Valid prediction for snap_scaffold_1-snap.3098-T1
Valid prediction for snap_scaffold_1-snap.3101-T1
Valid prediction for snap_scaffold_1-snap.3090-T1
Valid prediction for snap_scaffold_1-snap.3085-T1
Valid prediction for snap_scaffold_1-snap.3114-T1
Valid prediction for snap_scaffold_1-snap.3105-T1
Valid prediction for GlimmerHMM_glimmerT_2295-T1
Valid prediction for snap_scaffold_1-snap.3110-T1
Valid prediction for GlimmerHMM_glimmerT_2289-T1
Valid prediction for GlimmerHMM_glimmerT_2306-T1
Valid prediction for GlimmerHMM_glimmerT_2302-T1
Valid prediction for snap_scaffold_1-snap.3083-T1
Valid prediction for snap_scaffold_1-snap.3111-T1
Valid prediction for snap_scaffold_1-snap.3087-T1
Valid prediction for Augustus_model.g1694.t1
Valid prediction for snap_scaffold_1-snap.3117-T1
Valid prediction for snap_scaffold_1-snap.3088-T1
Valid prediction for GlimmerHMM_glimmerT_2299-T1
Valid prediction for snap_scaffold_1-snap.3106-T1
Valid prediction for snap_scaffold_1-snap.3102-T1
Valid prediction for snap_scaffold_1-snap.3108-T1
Valid prediction for GlimmerHMM_glimmerT_2285-T1
Valid prediction for GlimmerHMM_glimmerT_2296-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3701, rend_intergenic: 2324  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5047, rend_intergenic: 4978  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12691, rend_intergenic: 5209  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20051, rend_intergenic: 13050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29848, rend_intergenic: 25746  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41648, rend_intergenic: 30577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50005, rend_intergenic: 42833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63353, rend_intergenic: 61478  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70976, rend_intergenic: 68573  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73629, rend_intergenic: 71574  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75751, rend_intergenic: 74538  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87497, rend_intergenic: 85289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 134269
-exon list size: 227


building trellis

0.4    
0.9    
1.3    
1.7    
2.2    
2.6    
3.1    
3.5    
3.9    
4.4    
4.8    
5.2    
5.7    
6.1    
6.6    
7.0    
7.4    
7.9    
8.3    
8.7    
9.2    
9.6    
10.0    
10.5    
10.9    
11.4    
11.8    
12.2    
12.7    
13.1    
13.5    
14.0    
14.4    
14.8    
15.3    
15.7    
16.2    
16.6    
17.0    
17.5    
17.9    
18.3    
18.8    
19.2    
19.7    
20.1    
20.5    
21.0    
21.4    
21.8    
22.3    
22.7    
23.1    
23.6    
24.0    
24.5    
24.9    
25.3    
25.8    
26.2    
26.6    
27.1    
27.5    
27.9    
28.4    
28.8    
29.3    
29.7    
30.1    
30.6    
31.0    
31.4    
31.9    
32.3    
32.8    
33.2    
33.6    
34.1    
34.5    
34.9    
35.4    
35.8    
36.2    
36.7    
37.1    
37.6    
38.0    
38.4    
38.9    
39.3    
39.7    
40.2    
40.6    
41.0    
41.5    
41.9    
42.4    
42.8    
43.2    
43.7    
44.1    
44.5    
45.0    
45.4    
45.9    
46.3    
46.7    
47.2    
47.6    
48.0    
48.5    
48.9    
49.3    
49.8    
50.2    
50.7    
51.1    
51.5    
52.0    
52.4    
52.8    
53.3    
53.7    
54.1    
54.6    
55.0    
55.5    
55.9    
56.3    
56.8    
57.2    
57.6    
58.1    
58.5    
59.0    
59.4    
59.8    
60.3    
60.7    
61.1    
61.6    
62.0    
62.4    
62.9    
63.3    
63.8    
64.2    
64.6    
65.1    
65.5    
65.9    
66.4    
66.8    
67.2    
67.7    
68.1    
68.6    
69.0    
69.4    
69.9    
70.3    
70.7    
71.2    
71.6    
72.1    
72.5    
72.9    
73.4    
73.8    
74.2    
74.7    
75.1    
75.5    
76.0    
76.4    
76.9    
77.3    
77.7    
78.2    
78.6    
79.0    
79.5    
79.9    
80.3    
80.8    
81.2    
81.7    
82.1    
82.5    
83.0    
83.4    
83.8    
84.3    
84.7    
85.2    
85.6    
86.0    
86.5    
86.9    
87.3    
87.8    
88.2    
88.6    
89.1    
89.5    
90.0    
90.4    
90.8    
91.3    
91.7    
92.1    
92.6    
93.0    
93.4    
93.9    
94.3    
94.8    
95.2    
95.6    
96.1    
96.5    
96.9    
97.4    
97.8    
98.3    
98.7    
99.1    
99.6    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 3701, rend_intergenic: 2324  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5047, rend_intergenic: 4978  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12691, rend_intergenic: 5209  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20051, rend_intergenic: 13050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29848, rend_intergenic: 25746  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41648, rend_intergenic: 30577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50005, rend_intergenic: 42833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63353, rend_intergenic: 61478  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70976, rend_intergenic: 68573  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73629, rend_intergenic: 71574  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75751, rend_intergenic: 74538  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87497, rend_intergenic: 85289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support