-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1/scaffold_1_15535245-15824788

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g1528.t1
Valid prediction for snap_scaffold_1-snap.2739-T1
Valid prediction for snap_scaffold_1-snap.2726-T1
Valid prediction for GlimmerHMM_glimmerT_2045-T1
Valid prediction for snap_scaffold_1-snap.2711-T1
Valid prediction for snap_scaffold_1-snap.2745-T1
Valid prediction for Augustus_model.g1531.t1
Valid prediction for snap_scaffold_1-snap.2734-T1
Valid prediction for GlimmerHMM_glimmerT_2042-T1
Valid prediction for snap_scaffold_1-snap.2727-T1
Valid prediction for GlimmerHMM_glimmerT_2054-T1
Valid prediction for GlimmerHMM_glimmerT_2038-T1
Valid prediction for GlimmerHMM_glimmerT_2050-T1
Valid prediction for HiQ_model.g1535.t1
Valid prediction for snap_scaffold_1-snap.2717-T1
Valid prediction for GlimmerHMM_glimmerT_2043-T1
Valid prediction for GlimmerHMM_glimmerT_2057-T1
Valid prediction for snap_scaffold_1-snap.2742-T1
Valid prediction for snap_scaffold_1-snap.2716-T1
Valid prediction for GlimmerHMM_glimmerT_2059-T1
Valid prediction for GlimmerHMM_glimmerT_2052-T1
Valid prediction for Augustus_model.g1536.t1
Valid prediction for snap_scaffold_1-snap.2715-T1
Valid prediction for snap_scaffold_1-snap.2741-T1
Valid prediction for snap_scaffold_1-snap.2721-T1
Valid prediction for snap_scaffold_1-snap.2712-T1
Valid prediction for Augustus_model.g1534.t1
Valid prediction for Augustus_model.g1537.t1
Valid prediction for GlimmerHMM_glimmerT_2048-T1
Valid prediction for Augustus_model.g1532.t1
Valid prediction for snap_scaffold_1-snap.2737-T1
Valid prediction for snap_scaffold_1-snap.2744-T1
Valid prediction for GlimmerHMM_glimmerT_2063-T1
Valid prediction for Augustus_model.g1533.t1
Valid prediction for pasa_asmbl_2446.p1
Valid prediction for snap_scaffold_1-snap.2733-T1
Valid prediction for GlimmerHMM_glimmerT_2044-T1
Valid prediction for snap_scaffold_1-snap.2730-T1
Valid prediction for snap_scaffold_1-snap.2735-T1
Valid prediction for snap_scaffold_1-snap.2743-T1
Valid prediction for GlimmerHMM_glimmerT_2062-T1
Valid prediction for snap_scaffold_1-snap.2740-T1
Valid prediction for GlimmerHMM_glimmerT_2061-T1
Valid prediction for snap_scaffold_1-snap.2736-T1
Valid prediction for snap_scaffold_1-snap.2720-T1
Valid prediction for snap_scaffold_1-snap.2747-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1-snap.2738-T1
Valid prediction for GlimmerHMM_glimmerT_2055-T1
Valid prediction for GlimmerHMM_glimmerT_2056-T1
Valid prediction for snap_scaffold_1-snap.2728-T1
Valid prediction for GlimmerHMM_glimmerT_2058-T1
Valid prediction for GlimmerHMM_glimmerT_2051-T1
Valid prediction for snap_scaffold_1-snap.2710-T1
Valid prediction for snap_scaffold_1-snap.2718-T1
Valid prediction for snap_scaffold_1-snap.2724-T1
Valid prediction for snap_scaffold_1-snap.2714-T1
Valid prediction for snap_scaffold_1-snap.2719-T1
Valid prediction for snap_scaffold_1-snap.2713-T1
Valid prediction for Augustus_model.g1529.t1
Valid prediction for snap_scaffold_1-snap.2729-T1
Valid prediction for GlimmerHMM_glimmerT_2053-T1
Valid prediction for snap_scaffold_1-snap.2722-T1
Valid prediction for snap_scaffold_1-snap.2725-T1
Valid prediction for snap_scaffold_1-snap.2723-T1
Valid prediction for Augustus_model.g1530.t1
Valid prediction for GlimmerHMM_glimmerT_2041-T1
Valid prediction for snap_scaffold_1-snap.2732-T1
Valid prediction for snap_scaffold_1-snap.2746-T1
Valid prediction for GlimmerHMM_glimmerT_2047-T1
Valid prediction for GlimmerHMM_glimmerT_2060-T1
Valid prediction for GlimmerHMM_glimmerT_2040-T1
Valid prediction for GlimmerHMM_glimmerT_2049-T1
Valid prediction for snap_scaffold_1-snap.2731-T1
Valid prediction for GlimmerHMM_glimmerT_2046-T1
Valid prediction for GlimmerHMM_glimmerT_2039-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5031, rend_intergenic: 2204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20635, rend_intergenic: 9657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28133, rend_intergenic: 25084  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33918, rend_intergenic: 31117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38198, rend_intergenic: 34948  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46109, rend_intergenic: 39231  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99374, rend_intergenic: 98059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 289544
-exon list size: 238


building trellis

0.4    
0.8    
1.2    
1.7    
2.1    
2.5    
2.9    
3.3    
3.8    
4.2    
4.6    
5.0    
5.4    
5.8    
6.2    
6.7    
7.1    
7.5    
7.9    
8.3    
8.8    
9.2    
9.6    
10.0    
10.4    
10.8    
11.2    
11.7    
12.1    
12.5    
12.9    
13.3    
13.8    
14.2    
14.6    
15.0    
15.4    
15.8    
16.2    
16.7    
17.1    
17.5    
17.9    
18.3    
18.8    
19.2    
19.6    
20.0    
20.4    
20.8    
21.2    
21.7    
22.1    
22.5    
22.9    
23.3    
23.8    
24.2    
24.6    
25.0    
25.4    
25.8    
26.2    
26.7    
27.1    
27.5    
27.9    
28.3    
28.7    
29.2    
29.6    
30.0    
30.4    
30.8    
31.2    
31.7    
32.1    
32.5    
32.9    
33.3    
33.8    
34.2    
34.6    
35.0    
35.4    
35.8    
36.2    
36.7    
37.1    
37.5    
37.9    
38.3    
38.8    
39.2    
39.6    
40.0    
40.4    
40.8    
41.2    
41.7    
42.1    
42.5    
42.9    
43.3    
43.8    
44.2    
44.6    
45.0    
45.4    
45.8    
46.2    
46.7    
47.1    
47.5    
47.9    
48.3    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.7    
52.1    
52.5    
52.9    
53.3    
53.8    
54.2    
54.6    
55.0    
55.4    
55.8    
56.2    
56.7    
57.1    
57.5    
57.9    
58.3    
58.8    
59.2    
59.6    
60.0    
60.4    
60.8    
61.3    
61.7    
62.1    
62.5    
62.9    
63.3    
63.7    
64.2    
64.6    
65.0    
65.4    
65.8    
66.2    
66.7    
67.1    
67.5    
67.9    
68.3    
68.8    
69.2    
69.6    
70.0    
70.4    
70.8    
71.2    
71.7    
72.1    
72.5    
72.9    
73.3    
73.8    
74.2    
74.6    
75.0    
75.4    
75.8    
76.2    
76.7    
77.1    
77.5    
77.9    
78.3    
78.8    
79.2    
79.6    
80.0    
80.4    
80.8    
81.2    
81.7    
82.1    
82.5    
82.9    
83.3    
83.8    
84.2    
84.6    
85.0    
85.4    
85.8    
86.2    
86.7    
87.1    
87.5    
87.9    
88.3    
88.8    
89.2    
89.6    
90.0    
90.4    
90.8    
91.2    
91.7    
92.1    
92.5    
92.9    
93.3    
93.8    
94.2    
94.6    
95.0    
95.4    
95.8    
96.2    
96.7    
97.1    
97.5    
97.9    
98.3    
98.8    
99.2    
99.6    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 5031, rend_intergenic: 2204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20635, rend_intergenic: 9657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28133, rend_intergenic: 25084  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33918, rend_intergenic: 31117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38198, rend_intergenic: 34948  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46109, rend_intergenic: 39231  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99374, rend_intergenic: 98059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support