[05/06/24 17:03:13]: /venv/lib/python3.8/site-packages/funannotate/aux_scripts/funannotate-p2g.py -p fun/predict_misc/proteins.combined.fa -g /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/genome.softmasked.fa -o fun/predict_misc/protein_alignments.gff3 --maxintron 3000 --cpus 16 --exonerate_pident 80 --ploidy 1 -f diamond --tmpdir /tmp --tblastn_out fun/predict_misc/p2g.diamond.out --logfile fun/logfiles/funannotate-p2g.log

[05/06/24 17:03:14]: Mapping 557,938 proteins to genome using diamond and exonerate
[05/06/24 17:03:14]: Diamond v2.1.8; Exonerate v2.4.0
[05/06/24 17:03:14]: diamond makedb --threads 16 --in /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/proteins.combined.fa --db diamond
[05/06/24 17:03:17]: diamond blastx --threads 16 -q /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/genome.softmasked.fa --db diamond -o diamond.matches.tab -e 1e-10 -k 0 --more-sensitive --unal 0 -c 1 -F 15 -f 6 sseqid slen sstart send qseqid qlen qstart qend pident length evalue score qcovhsp qframe
[05/06/24 17:15:03]: Writing 238716 contig splits for exonerate
[05/06/24 17:15:15]: Found 238,716 preliminary alignments with diamond in 0:11:17 --> generated FASTA files for exonerate in 0:00:43
[05/06/24 17:50:25]: Exonerate finished in 0:35:02: found 9,639 alignments