[05/06/24 17:52:49]: /venv/lib/python3.8/site-packages/funannotate/aux_scripts/augustus_parallel.py --species species_name --hints fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH /usr/share/augustus/config --local_augustus fun/predict_misc/ab_initio_parameters/augustus -i /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/genome.softmasked.fa -o fun/predict_misc/augustus.gff3 --cpus 16 -e /venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --logfile fun/logfiles/augustus-parallel.log

[05/06/24 17:52:49]: AUGUSTUS_CONFIG_PATH=/usr/share/augustus/config
[05/06/24 17:52:49]: Augustus Base directory=/usr/share/augustus/
[05/06/24 17:52:49]: Local Augustus path=fun/predict_misc/ab_initio_parameters/augustus
[05/06/24 17:52:49]: Splitting contigs and hints files
[05/06/24 17:55:26]: Running Augustus on 4432 chunks, using 16 CPUs
[05/06/24 17:55:26]: augustus --species=species_name --predictionStart=1 --predictionEnd=499087.1896876911 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:55:26]: augustus --species=species_name --predictionStart=489087.1896876911 --predictionEnd=988174.3793753822 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:55:26]: augustus --species=species_name --predictionStart=978174.3793753822 --predictionEnd=1477261.5690630733 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:55:26]: augustus --species=species_name --predictionStart=1467261.5690630733 --predictionEnd=1966348.7587507644 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:55:26]: augustus --species=species_name --predictionStart=1956348.7587507644 --predictionEnd=2455435.9484384554 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:55:26]: augustus --species=species_name --predictionStart=2445435.9484384554 --predictionEnd=2944523.1381261465 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:55:26]: augustus --species=species_name --predictionStart=2934523.1381261465 --predictionEnd=3433610.3278138377 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:55:26]: augustus --species=species_name --predictionStart=3912697.517501529 --predictionEnd=4411784.70718922 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:55:26]: augustus --species=species_name --predictionStart=3423610.3278138377 --predictionEnd=3922697.517501529 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:55:26]: augustus --species=species_name --predictionStart=4401784.70718922 --predictionEnd=4900871.896876911 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:55:26]: augustus --species=species_name --predictionStart=4890871.896876911 --predictionEnd=5389959.086564601 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:55:26]: augustus --species=species_name --predictionStart=6847220.6556276735 --predictionEnd=7346307.845315364 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:55:26]: augustus --species=species_name --predictionStart=6358133.465939983 --predictionEnd=6857220.6556276735 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:55:26]: augustus --species=species_name --predictionStart=5379959.086564601 --predictionEnd=5879046.276252292 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:55:26]: augustus --species=species_name --predictionStart=5869046.276252292 --predictionEnd=6368133.465939983 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:55:26]: augustus --species=species_name --predictionStart=7336307.845315364 --predictionEnd=7835395.035003055 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:56:25]: augustus --species=species_name --predictionStart=7825395.035003055 --predictionEnd=8324482.224690746 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:56:28]: augustus --species=species_name --predictionStart=8314482.224690746 --predictionEnd=8813569.414378436 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:56:29]: augustus --species=species_name --predictionStart=8803569.414378436 --predictionEnd=9302656.604066128 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:56:30]: augustus --species=species_name --predictionStart=9292656.604066128 --predictionEnd=9791743.79375382 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:56:31]: augustus --species=species_name --predictionStart=9781743.79375382 --predictionEnd=10280830.983441511 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:56:32]: augustus --species=species_name --predictionStart=10270830.983441511 --predictionEnd=10769918.173129203 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:56:33]: augustus --species=species_name --predictionStart=10759918.173129203 --predictionEnd=11259005.362816894 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:56:33]: augustus --species=species_name --predictionStart=11249005.362816894 --predictionEnd=11748092.552504586 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:56:33]: augustus --species=species_name --predictionStart=11738092.552504586 --predictionEnd=12237179.742192278 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:56:34]: augustus --species=species_name --predictionStart=12227179.742192278 --predictionEnd=12726266.93187997 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:56:34]: augustus --species=species_name --predictionStart=12716266.93187997 --predictionEnd=13215354.121567661 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:56:35]: augustus --species=species_name --predictionStart=13205354.121567661 --predictionEnd=13704441.311255353 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:56:38]: augustus --species=species_name --predictionStart=13694441.311255353 --predictionEnd=14193528.500943044 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:56:41]: augustus --species=species_name --predictionStart=14183528.500943044 --predictionEnd=14682615.690630736 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:56:42]: augustus --species=species_name --predictionStart=14672615.690630736 --predictionEnd=15171702.880318427 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:56:44]: augustus --species=species_name --predictionStart=15161702.880318427 --predictionEnd=15660790.07000612 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:57:29]: augustus --species=species_name --predictionStart=15650790.07000612 --predictionEnd=16149877.25969381 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:57:30]: augustus --species=species_name --predictionStart=16139877.25969381 --predictionEnd=16638964.449381502 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:57:30]: augustus --species=species_name --predictionStart=16628964.449381502 --predictionEnd=17128051.639069192 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:57:33]: augustus --species=species_name --predictionStart=17118051.639069192 --predictionEnd=17617138.828756884 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:57:33]: augustus --species=species_name --predictionStart=17607138.828756884 --predictionEnd=18106226.018444575 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:57:33]: augustus --species=species_name --predictionStart=18096226.018444575 --predictionEnd=18595313.208132267 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
[05/06/24 17:57:36]: augustus --species=species_name --predictionStart=18585313.208132267 --predictionEnd=19084400.39781996 --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1.fa
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[05/06/24 19:02:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_40.fa
[05/06/24 19:02:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_41.fa
[05/06/24 19:02:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_42.fa
[05/06/24 19:02:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_43.fa
[05/06/24 19:02:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_44.fa
[05/06/24 19:02:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_45.fa
[05/06/24 19:02:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_46.fa
[05/06/24 19:02:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_47.fa
[05/06/24 19:02:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_48.fa
[05/06/24 19:02:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_49.fa
[05/06/24 19:02:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_50.fa
[05/06/24 19:02:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_51.fa
[05/06/24 19:02:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_52.fa
[05/06/24 19:02:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_53.fa
[05/06/24 19:02:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_54.fa
[05/06/24 19:02:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_55.fa
[05/06/24 19:02:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_56.fa
[05/06/24 19:02:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_57.fa
[05/06/24 19:02:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_58.fa
[05/06/24 19:02:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_59.fa
[05/06/24 19:02:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_60.fa
[05/06/24 19:02:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_61.fa
[05/06/24 19:02:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_62.fa
[05/06/24 19:02:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_63.fa
[05/06/24 19:02:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_64.fa
[05/06/24 19:02:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_65.fa
[05/06/24 19:02:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_66.fa
[05/06/24 19:02:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_67.fa
[05/06/24 19:02:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_68.fa
[05/06/24 19:02:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_69.fa
[05/06/24 19:02:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_70.fa
[05/06/24 19:02:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_71.fa
[05/06/24 19:02:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_72.fa
[05/06/24 19:02:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_73.fa
[05/06/24 19:02:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_74.fa
[05/06/24 19:02:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_75.fa
[05/06/24 19:02:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_76.fa
[05/06/24 19:02:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_77.fa
[05/06/24 19:02:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_78.fa
[05/06/24 19:02:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_79.fa
[05/06/24 19:02:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_80.fa
[05/06/24 19:02:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_81.fa
[05/06/24 19:02:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_82.fa
[05/06/24 19:02:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_83.fa
[05/06/24 19:03:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_84.fa
[05/06/24 19:03:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_85.fa
[05/06/24 19:03:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_86.fa
[05/06/24 19:03:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_87.fa
[05/06/24 19:03:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_88.fa
[05/06/24 19:03:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_89.fa
[05/06/24 19:03:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_90.fa
[05/06/24 19:03:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_91.fa
[05/06/24 19:03:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_92.fa
[05/06/24 19:03:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_93.fa
[05/06/24 19:03:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_94.fa
[05/06/24 19:03:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_95.fa
[05/06/24 19:03:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_96.fa
[05/06/24 19:03:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_97.fa
[05/06/24 19:03:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_98.fa
[05/06/24 19:03:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_99.fa
[05/06/24 19:03:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_100.fa
[05/06/24 19:03:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_101.fa
[05/06/24 19:03:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_102.fa
[05/06/24 19:03:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_103.fa
[05/06/24 19:03:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_104.fa
[05/06/24 19:03:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_105.fa
[05/06/24 19:03:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_106.fa
[05/06/24 19:03:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_107.fa
[05/06/24 19:03:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_108.fa
[05/06/24 19:03:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_109.fa
[05/06/24 19:03:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_110.fa
[05/06/24 19:03:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_111.fa
[05/06/24 19:03:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_112.fa
[05/06/24 19:03:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_113.fa
[05/06/24 19:03:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_114.fa
[05/06/24 19:03:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_115.fa
[05/06/24 19:03:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_116.fa
[05/06/24 19:03:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_117.fa
[05/06/24 19:03:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_118.fa
[05/06/24 19:03:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_119.fa
[05/06/24 19:03:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_120.fa
[05/06/24 19:03:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_121.fa
[05/06/24 19:03:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_122.fa
[05/06/24 19:03:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_123.fa
[05/06/24 19:03:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_124.fa
[05/06/24 19:03:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_125.fa
[05/06/24 19:03:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_126.fa
[05/06/24 19:03:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_127.fa
[05/06/24 19:03:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_128.fa
[05/06/24 19:03:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_129.fa
[05/06/24 19:03:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_130.fa
[05/06/24 19:03:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_131.fa
[05/06/24 19:03:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_132.fa
[05/06/24 19:03:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_133.fa
[05/06/24 19:03:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_134.fa
[05/06/24 19:03:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_135.fa
[05/06/24 19:03:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_136.fa
[05/06/24 19:03:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_137.fa
[05/06/24 19:03:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_138.fa
[05/06/24 19:03:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_139.fa
[05/06/24 19:03:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_140.fa
[05/06/24 19:03:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_141.fa
[05/06/24 19:03:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_142.fa
[05/06/24 19:03:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_143.fa
[05/06/24 19:03:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_144.fa
[05/06/24 19:03:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_145.fa
[05/06/24 19:03:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_146.fa
[05/06/24 19:03:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_147.fa
[05/06/24 19:03:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_148.fa
[05/06/24 19:03:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_149.fa
[05/06/24 19:03:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_150.fa
[05/06/24 19:03:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_151.fa
[05/06/24 19:03:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_152.fa
[05/06/24 19:03:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_153.fa
[05/06/24 19:03:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_154.fa
[05/06/24 19:03:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_155.fa
[05/06/24 19:03:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_156.fa
[05/06/24 19:03:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_157.fa
[05/06/24 19:03:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_158.fa
[05/06/24 19:03:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_159.fa
[05/06/24 19:03:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_160.fa
[05/06/24 19:03:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_161.fa
[05/06/24 19:03:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_162.fa
[05/06/24 19:03:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_163.fa
[05/06/24 19:03:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_164.fa
[05/06/24 19:03:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_165.fa
[05/06/24 19:03:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_166.fa
[05/06/24 19:03:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_167.fa
[05/06/24 19:03:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_168.fa
[05/06/24 19:03:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_169.fa
[05/06/24 19:03:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_170.fa
[05/06/24 19:03:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_171.fa
[05/06/24 19:03:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_172.fa
[05/06/24 19:03:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_173.fa
[05/06/24 19:03:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_174.fa
[05/06/24 19:03:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_175.fa
[05/06/24 19:03:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_176.fa
[05/06/24 19:03:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_177.fa
[05/06/24 19:03:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_178.fa
[05/06/24 19:03:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_179.fa
[05/06/24 19:03:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_180.fa
[05/06/24 19:03:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_181.fa
[05/06/24 19:03:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_182.fa
[05/06/24 19:03:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_183.fa
[05/06/24 19:03:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_184.fa
[05/06/24 19:03:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_185.fa
[05/06/24 19:03:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_186.fa
[05/06/24 19:03:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_187.fa
[05/06/24 19:03:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_188.fa
[05/06/24 19:03:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_189.fa
[05/06/24 19:03:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_190.fa
[05/06/24 19:03:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_191.fa
[05/06/24 19:03:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_192.fa
[05/06/24 19:03:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_193.fa
[05/06/24 19:03:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_194.fa
[05/06/24 19:03:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_195.fa
[05/06/24 19:03:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_196.fa
[05/06/24 19:03:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_197.fa
[05/06/24 19:03:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_198.fa
[05/06/24 19:03:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_199.fa
[05/06/24 19:03:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_200.fa
[05/06/24 19:03:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_201.fa
[05/06/24 19:03:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_202.fa
[05/06/24 19:03:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_203.fa
[05/06/24 19:03:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_204.fa
[05/06/24 19:03:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_205.fa
[05/06/24 19:03:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_206.fa
[05/06/24 19:03:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_207.fa
[05/06/24 19:03:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_208.fa
[05/06/24 19:03:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_209.fa
[05/06/24 19:03:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_210.fa
[05/06/24 19:03:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_211.fa
[05/06/24 19:03:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_212.fa
[05/06/24 19:03:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_213.fa
[05/06/24 19:03:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_214.fa
[05/06/24 19:03:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_215.fa
[05/06/24 19:03:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_216.fa
[05/06/24 19:03:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_217.fa
[05/06/24 19:03:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_218.fa
[05/06/24 19:03:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_219.fa
[05/06/24 19:03:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_220.fa
[05/06/24 19:03:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_221.fa
[05/06/24 19:03:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_222.fa
[05/06/24 19:03:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_223.fa
[05/06/24 19:03:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_224.fa
[05/06/24 19:03:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_225.fa
[05/06/24 19:03:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_226.fa
[05/06/24 19:03:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_227.fa
[05/06/24 19:03:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_228.fa
[05/06/24 19:03:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_229.fa
[05/06/24 19:03:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_230.fa
[05/06/24 19:03:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_231.fa
[05/06/24 19:03:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_232.fa
[05/06/24 19:03:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_233.fa
[05/06/24 19:03:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_234.fa
[05/06/24 19:03:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_235.fa
[05/06/24 19:03:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_236.fa
[05/06/24 19:03:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_237.fa
[05/06/24 19:03:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_238.fa
[05/06/24 19:03:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_239.fa
[05/06/24 19:03:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_240.fa
[05/06/24 19:03:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_241.fa
[05/06/24 19:03:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_242.fa
[05/06/24 19:03:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_243.fa
[05/06/24 19:03:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_244.fa
[05/06/24 19:03:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_245.fa
[05/06/24 19:03:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_246.fa
[05/06/24 19:03:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_247.fa
[05/06/24 19:03:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_248.fa
[05/06/24 19:03:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_249.fa
[05/06/24 19:03:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_250.fa
[05/06/24 19:03:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_251.fa
[05/06/24 19:03:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_252.fa
[05/06/24 19:03:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_253.fa
[05/06/24 19:03:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_254.fa
[05/06/24 19:03:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_255.fa
[05/06/24 19:03:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_256.fa
[05/06/24 19:03:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_257.fa
[05/06/24 19:03:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_258.fa
[05/06/24 19:03:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_259.fa
[05/06/24 19:03:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_260.fa
[05/06/24 19:03:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_261.fa
[05/06/24 19:03:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_262.fa
[05/06/24 19:03:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_263.fa
[05/06/24 19:03:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_264.fa
[05/06/24 19:03:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_265.fa
[05/06/24 19:03:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_266.fa
[05/06/24 19:03:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_267.fa
[05/06/24 19:03:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_268.fa
[05/06/24 19:03:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_269.fa
[05/06/24 19:03:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_270.fa
[05/06/24 19:03:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_271.fa
[05/06/24 19:03:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_272.fa
[05/06/24 19:03:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_273.fa
[05/06/24 19:03:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_274.fa
[05/06/24 19:03:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_275.fa
[05/06/24 19:03:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_276.fa
[05/06/24 19:03:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_277.fa
[05/06/24 19:03:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_278.fa
[05/06/24 19:03:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_279.fa
[05/06/24 19:03:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_280.fa
[05/06/24 19:03:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_281.fa
[05/06/24 19:03:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_282.fa
[05/06/24 19:03:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_283.fa
[05/06/24 19:03:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_284.fa
[05/06/24 19:03:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_285.fa
[05/06/24 19:03:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_286.fa
[05/06/24 19:03:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_287.fa
[05/06/24 19:03:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_288.fa
[05/06/24 19:03:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_289.fa
[05/06/24 19:03:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_290.fa
[05/06/24 19:03:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_291.fa
[05/06/24 19:03:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_292.fa
[05/06/24 19:03:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_293.fa
[05/06/24 19:03:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_294.fa
[05/06/24 19:03:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_295.fa
[05/06/24 19:04:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_296.fa
[05/06/24 19:04:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_297.fa
[05/06/24 19:04:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_298.fa
[05/06/24 19:04:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_299.fa
[05/06/24 19:04:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_300.fa
[05/06/24 19:04:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_301.fa
[05/06/24 19:04:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_302.fa
[05/06/24 19:04:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_303.fa
[05/06/24 19:04:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_304.fa
[05/06/24 19:04:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_305.fa
[05/06/24 19:04:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_306.fa
[05/06/24 19:04:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_307.fa
[05/06/24 19:04:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_308.fa
[05/06/24 19:04:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_309.fa
[05/06/24 19:04:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_310.fa
[05/06/24 19:04:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_311.fa
[05/06/24 19:04:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_312.fa
[05/06/24 19:04:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_313.fa
[05/06/24 19:04:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_314.fa
[05/06/24 19:04:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_315.fa
[05/06/24 19:04:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_316.fa
[05/06/24 19:04:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_317.fa
[05/06/24 19:04:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_318.fa
[05/06/24 19:04:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_319.fa
[05/06/24 19:04:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_320.fa
[05/06/24 19:04:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_321.fa
[05/06/24 19:04:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_322.fa
[05/06/24 19:04:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_323.fa
[05/06/24 19:04:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_324.fa
[05/06/24 19:04:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_325.fa
[05/06/24 19:04:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_326.fa
[05/06/24 19:04:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_327.fa
[05/06/24 19:04:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_328.fa
[05/06/24 19:04:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_329.fa
[05/06/24 19:04:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_330.fa
[05/06/24 19:04:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_331.fa
[05/06/24 19:04:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_332.fa
[05/06/24 19:04:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_333.fa
[05/06/24 19:04:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_334.fa
[05/06/24 19:04:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_335.fa
[05/06/24 19:04:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_336.fa
[05/06/24 19:04:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_337.fa
[05/06/24 19:04:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_338.fa
[05/06/24 19:04:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_339.fa
[05/06/24 19:04:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_340.fa
[05/06/24 19:04:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_341.fa
[05/06/24 19:04:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_342.fa
[05/06/24 19:04:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_343.fa
[05/06/24 19:04:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_344.fa
[05/06/24 19:04:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_345.fa
[05/06/24 19:04:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_346.fa
[05/06/24 19:04:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_347.fa
[05/06/24 19:04:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_348.fa
[05/06/24 19:04:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_349.fa
[05/06/24 19:04:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_350.fa
[05/06/24 19:04:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_351.fa
[05/06/24 19:04:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_352.fa
[05/06/24 19:04:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_353.fa
[05/06/24 19:04:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_354.fa
[05/06/24 19:04:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_355.fa
[05/06/24 19:04:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_356.fa
[05/06/24 19:04:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_357.fa
[05/06/24 19:04:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_358.fa
[05/06/24 19:04:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_359.fa
[05/06/24 19:04:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_360.fa
[05/06/24 19:04:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_361.fa
[05/06/24 19:04:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_362.fa
[05/06/24 19:04:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_363.fa
[05/06/24 19:04:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_364.fa
[05/06/24 19:04:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_365.fa
[05/06/24 19:04:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_366.fa
[05/06/24 19:04:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_367.fa
[05/06/24 19:04:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_368.fa
[05/06/24 19:04:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_369.fa
[05/06/24 19:04:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_370.fa
[05/06/24 19:04:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_371.fa
[05/06/24 19:04:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_372.fa
[05/06/24 19:04:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_373.fa
[05/06/24 19:04:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_374.fa
[05/06/24 19:04:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_375.fa
[05/06/24 19:04:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_376.fa
[05/06/24 19:04:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_377.fa
[05/06/24 19:04:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_378.fa
[05/06/24 19:04:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_379.fa
[05/06/24 19:04:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_380.fa
[05/06/24 19:04:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_381.fa
[05/06/24 19:04:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_382.fa
[05/06/24 19:04:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_383.fa
[05/06/24 19:04:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_384.fa
[05/06/24 19:04:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_385.fa
[05/06/24 19:04:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_386.fa
[05/06/24 19:04:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_387.fa
[05/06/24 19:04:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_388.fa
[05/06/24 19:04:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_389.fa
[05/06/24 19:04:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_390.fa
[05/06/24 19:04:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_391.fa
[05/06/24 19:04:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_392.fa
[05/06/24 19:04:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_393.fa
[05/06/24 19:04:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_394.fa
[05/06/24 19:04:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_395.fa
[05/06/24 19:04:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_396.fa
[05/06/24 19:04:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_397.fa
[05/06/24 19:04:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_398.fa
[05/06/24 19:04:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_399.fa
[05/06/24 19:04:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_400.fa
[05/06/24 19:04:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_401.fa
[05/06/24 19:04:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_402.fa
[05/06/24 19:04:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_403.fa
[05/06/24 19:04:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_404.fa
[05/06/24 19:04:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_405.fa
[05/06/24 19:04:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_406.fa
[05/06/24 19:04:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_407.fa
[05/06/24 19:04:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_408.fa
[05/06/24 19:04:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_409.fa
[05/06/24 19:04:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_410.fa
[05/06/24 19:04:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_411.fa
[05/06/24 19:04:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_412.fa
[05/06/24 19:04:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_413.fa
[05/06/24 19:04:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_414.fa
[05/06/24 19:04:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_415.fa
[05/06/24 19:04:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_416.fa
[05/06/24 19:04:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_417.fa
[05/06/24 19:04:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_418.fa
[05/06/24 19:04:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_419.fa
[05/06/24 19:04:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_420.fa
[05/06/24 19:04:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_421.fa
[05/06/24 19:04:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_422.fa
[05/06/24 19:04:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_423.fa
[05/06/24 19:04:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_424.fa
[05/06/24 19:04:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_425.fa
[05/06/24 19:04:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_426.fa
[05/06/24 19:04:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_427.fa
[05/06/24 19:04:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_428.fa
[05/06/24 19:04:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_429.fa
[05/06/24 19:04:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_430.fa
[05/06/24 19:04:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_431.fa
[05/06/24 19:04:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_432.fa
[05/06/24 19:04:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_433.fa
[05/06/24 19:04:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_434.fa
[05/06/24 19:04:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_435.fa
[05/06/24 19:04:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_436.fa
[05/06/24 19:04:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_437.fa
[05/06/24 19:04:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_438.fa
[05/06/24 19:04:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_439.fa
[05/06/24 19:04:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_440.fa
[05/06/24 19:04:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_441.fa
[05/06/24 19:04:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_442.fa
[05/06/24 19:04:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_443.fa
[05/06/24 19:04:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_444.fa
[05/06/24 19:04:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_445.fa
[05/06/24 19:04:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_446.fa
[05/06/24 19:04:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_447.fa
[05/06/24 19:04:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_448.fa
[05/06/24 19:04:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_449.fa
[05/06/24 19:04:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_450.fa
[05/06/24 19:04:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_451.fa
[05/06/24 19:04:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_452.fa
[05/06/24 19:04:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_453.fa
[05/06/24 19:04:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_454.fa
[05/06/24 19:04:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_455.fa
[05/06/24 19:04:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_456.fa
[05/06/24 19:04:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_457.fa
[05/06/24 19:04:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_458.fa
[05/06/24 19:04:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_459.fa
[05/06/24 19:04:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_460.fa
[05/06/24 19:04:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_461.fa
[05/06/24 19:04:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_462.fa
[05/06/24 19:04:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_463.fa
[05/06/24 19:04:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_464.fa
[05/06/24 19:04:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_465.fa
[05/06/24 19:04:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_466.fa
[05/06/24 19:04:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_467.fa
[05/06/24 19:04:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_468.fa
[05/06/24 19:04:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_469.fa
[05/06/24 19:04:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_470.fa
[05/06/24 19:04:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_471.fa
[05/06/24 19:04:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_472.fa
[05/06/24 19:04:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_473.fa
[05/06/24 19:04:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_474.fa
[05/06/24 19:04:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_475.fa
[05/06/24 19:04:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_476.fa
[05/06/24 19:04:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_477.fa
[05/06/24 19:04:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_478.fa
[05/06/24 19:04:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_479.fa
[05/06/24 19:04:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_480.fa
[05/06/24 19:04:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_481.fa
[05/06/24 19:04:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_482.fa
[05/06/24 19:04:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_483.fa
[05/06/24 19:04:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_484.fa
[05/06/24 19:04:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_485.fa
[05/06/24 19:04:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_486.fa
[05/06/24 19:04:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_487.fa
[05/06/24 19:04:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_488.fa
[05/06/24 19:04:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_489.fa
[05/06/24 19:04:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_490.fa
[05/06/24 19:04:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_491.fa
[05/06/24 19:04:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_492.fa
[05/06/24 19:04:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_493.fa
[05/06/24 19:04:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_494.fa
[05/06/24 19:04:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_495.fa
[05/06/24 19:04:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_496.fa
[05/06/24 19:04:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_497.fa
[05/06/24 19:04:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_498.fa
[05/06/24 19:04:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_499.fa
[05/06/24 19:04:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_500.fa
[05/06/24 19:04:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_501.fa
[05/06/24 19:04:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_502.fa
[05/06/24 19:04:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_503.fa
[05/06/24 19:04:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_504.fa
[05/06/24 19:04:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_505.fa
[05/06/24 19:04:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_506.fa
[05/06/24 19:04:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_507.fa
[05/06/24 19:04:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_508.fa
[05/06/24 19:04:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_509.fa
[05/06/24 19:04:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_510.fa
[05/06/24 19:04:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_511.fa
[05/06/24 19:04:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_512.fa
[05/06/24 19:04:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_513.fa
[05/06/24 19:04:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_514.fa
[05/06/24 19:04:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_515.fa
[05/06/24 19:04:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_516.fa
[05/06/24 19:04:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_517.fa
[05/06/24 19:04:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_518.fa
[05/06/24 19:04:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_519.fa
[05/06/24 19:04:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_520.fa
[05/06/24 19:04:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_521.fa
[05/06/24 19:04:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_522.fa
[05/06/24 19:04:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_523.fa
[05/06/24 19:04:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_524.fa
[05/06/24 19:04:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_525.fa
[05/06/24 19:04:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_526.fa
[05/06/24 19:04:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_527.fa
[05/06/24 19:04:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_528.fa
[05/06/24 19:04:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_529.fa
[05/06/24 19:04:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_530.fa
[05/06/24 19:04:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_531.fa
[05/06/24 19:04:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_532.fa
[05/06/24 19:04:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_533.fa
[05/06/24 19:04:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_534.fa
[05/06/24 19:04:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_535.fa
[05/06/24 19:04:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_536.fa
[05/06/24 19:04:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_537.fa
[05/06/24 19:04:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_538.fa
[05/06/24 19:04:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_539.fa
[05/06/24 19:04:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_540.fa
[05/06/24 19:04:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_541.fa
[05/06/24 19:04:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_542.fa
[05/06/24 19:04:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_543.fa
[05/06/24 19:04:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_544.fa
[05/06/24 19:04:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_545.fa
[05/06/24 19:04:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_546.fa
[05/06/24 19:04:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_547.fa
[05/06/24 19:04:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_548.fa
[05/06/24 19:04:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_549.fa
[05/06/24 19:04:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_550.fa
[05/06/24 19:04:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_551.fa
[05/06/24 19:04:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_552.fa
[05/06/24 19:04:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_553.fa
[05/06/24 19:04:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_554.fa
[05/06/24 19:04:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_555.fa
[05/06/24 19:04:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_556.fa
[05/06/24 19:04:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_557.fa
[05/06/24 19:04:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_558.fa
[05/06/24 19:04:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_559.fa
[05/06/24 19:04:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_560.fa
[05/06/24 19:04:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_561.fa
[05/06/24 19:04:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_562.fa
[05/06/24 19:04:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_563.fa
[05/06/24 19:04:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_564.fa
[05/06/24 19:04:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_565.fa
[05/06/24 19:04:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_566.fa
[05/06/24 19:04:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_567.fa
[05/06/24 19:04:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_568.fa
[05/06/24 19:04:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_569.fa
[05/06/24 19:04:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_570.fa
[05/06/24 19:04:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_571.fa
[05/06/24 19:04:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_572.fa
[05/06/24 19:04:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_573.fa
[05/06/24 19:04:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_574.fa
[05/06/24 19:04:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_575.fa
[05/06/24 19:04:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_576.fa
[05/06/24 19:04:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_577.fa
[05/06/24 19:04:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_578.fa
[05/06/24 19:04:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_579.fa
[05/06/24 19:04:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_580.fa
[05/06/24 19:04:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_581.fa
[05/06/24 19:04:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_582.fa
[05/06/24 19:04:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_583.fa
[05/06/24 19:04:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_584.fa
[05/06/24 19:04:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_585.fa
[05/06/24 19:04:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_586.fa
[05/06/24 19:04:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_587.fa
[05/06/24 19:04:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_588.fa
[05/06/24 19:04:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_589.fa
[05/06/24 19:04:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_590.fa
[05/06/24 19:04:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_591.fa
[05/06/24 19:04:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_592.fa
[05/06/24 19:04:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_593.fa
[05/06/24 19:04:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_594.fa
[05/06/24 19:04:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_595.fa
[05/06/24 19:04:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_596.fa
[05/06/24 19:04:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_597.fa
[05/06/24 19:04:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_598.fa
[05/06/24 19:04:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_599.fa
[05/06/24 19:04:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_600.fa
[05/06/24 19:04:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_601.fa
[05/06/24 19:04:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_602.fa
[05/06/24 19:04:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_603.fa
[05/06/24 19:04:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_604.fa
[05/06/24 19:04:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_605.fa
[05/06/24 19:04:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_606.fa
[05/06/24 19:04:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_607.fa
[05/06/24 19:04:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_608.fa
[05/06/24 19:04:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_609.fa
[05/06/24 19:04:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_610.fa
[05/06/24 19:04:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_611.fa
[05/06/24 19:04:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_612.fa
[05/06/24 19:04:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_613.fa
[05/06/24 19:04:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_614.fa
[05/06/24 19:04:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_615.fa
[05/06/24 19:04:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_616.fa
[05/06/24 19:04:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_617.fa
[05/06/24 19:04:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_618.fa
[05/06/24 19:04:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_619.fa
[05/06/24 19:04:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_620.fa
[05/06/24 19:04:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_621.fa
[05/06/24 19:04:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_622.fa
[05/06/24 19:04:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_623.fa
[05/06/24 19:04:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_624.fa
[05/06/24 19:04:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_625.fa
[05/06/24 19:04:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_626.fa
[05/06/24 19:05:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_627.fa
[05/06/24 19:05:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_628.fa
[05/06/24 19:05:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_629.fa
[05/06/24 19:05:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_630.fa
[05/06/24 19:05:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_631.fa
[05/06/24 19:05:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_632.fa
[05/06/24 19:05:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_633.fa
[05/06/24 19:05:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_634.fa
[05/06/24 19:05:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_635.fa
[05/06/24 19:05:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_636.fa
[05/06/24 19:05:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_637.fa
[05/06/24 19:05:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_638.fa
[05/06/24 19:05:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_639.fa
[05/06/24 19:05:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_640.fa
[05/06/24 19:05:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_641.fa
[05/06/24 19:05:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_642.fa
[05/06/24 19:05:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_643.fa
[05/06/24 19:05:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_644.fa
[05/06/24 19:05:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_645.fa
[05/06/24 19:05:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_646.fa
[05/06/24 19:05:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_647.fa
[05/06/24 19:05:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_648.fa
[05/06/24 19:05:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_649.fa
[05/06/24 19:05:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_650.fa
[05/06/24 19:05:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_651.fa
[05/06/24 19:05:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_652.fa
[05/06/24 19:05:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_653.fa
[05/06/24 19:05:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_654.fa
[05/06/24 19:05:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_655.fa
[05/06/24 19:05:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_656.fa
[05/06/24 19:05:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_657.fa
[05/06/24 19:05:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_658.fa
[05/06/24 19:05:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_659.fa
[05/06/24 19:05:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_660.fa
[05/06/24 19:05:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_661.fa
[05/06/24 19:05:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_662.fa
[05/06/24 19:05:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_663.fa
[05/06/24 19:05:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_664.fa
[05/06/24 19:05:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_665.fa
[05/06/24 19:05:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_666.fa
[05/06/24 19:05:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_667.fa
[05/06/24 19:05:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_668.fa
[05/06/24 19:05:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_669.fa
[05/06/24 19:05:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_670.fa
[05/06/24 19:05:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_671.fa
[05/06/24 19:05:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_672.fa
[05/06/24 19:05:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_673.fa
[05/06/24 19:05:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_674.fa
[05/06/24 19:05:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_675.fa
[05/06/24 19:05:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_676.fa
[05/06/24 19:05:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_677.fa
[05/06/24 19:05:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_678.fa
[05/06/24 19:05:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_679.fa
[05/06/24 19:05:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_680.fa
[05/06/24 19:05:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_681.fa
[05/06/24 19:05:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_682.fa
[05/06/24 19:05:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_683.fa
[05/06/24 19:05:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_684.fa
[05/06/24 19:05:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_685.fa
[05/06/24 19:05:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_686.fa
[05/06/24 19:05:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_687.fa
[05/06/24 19:05:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_688.fa
[05/06/24 19:05:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_689.fa
[05/06/24 19:05:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_690.fa
[05/06/24 19:05:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_691.fa
[05/06/24 19:05:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_692.fa
[05/06/24 19:05:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_693.fa
[05/06/24 19:05:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_694.fa
[05/06/24 19:05:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_695.fa
[05/06/24 19:05:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_696.fa
[05/06/24 19:05:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_697.fa
[05/06/24 19:05:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_698.fa
[05/06/24 19:05:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_699.fa
[05/06/24 19:05:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_700.fa
[05/06/24 19:05:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_701.fa
[05/06/24 19:05:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_702.fa
[05/06/24 19:05:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_703.fa
[05/06/24 19:05:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_704.fa
[05/06/24 19:05:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_705.fa
[05/06/24 19:05:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_706.fa
[05/06/24 19:05:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_707.fa
[05/06/24 19:05:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_708.fa
[05/06/24 19:05:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_709.fa
[05/06/24 19:05:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_710.fa
[05/06/24 19:05:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_711.fa
[05/06/24 19:05:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_712.fa
[05/06/24 19:05:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_713.fa
[05/06/24 19:05:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_714.fa
[05/06/24 19:05:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_715.fa
[05/06/24 19:05:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_716.fa
[05/06/24 19:05:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_717.fa
[05/06/24 19:05:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_718.fa
[05/06/24 19:05:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_719.fa
[05/06/24 19:05:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_720.fa
[05/06/24 19:05:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_721.fa
[05/06/24 19:05:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_722.fa
[05/06/24 19:05:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_723.fa
[05/06/24 19:05:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_724.fa
[05/06/24 19:05:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_725.fa
[05/06/24 19:05:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_726.fa
[05/06/24 19:05:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_727.fa
[05/06/24 19:05:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_728.fa
[05/06/24 19:05:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_729.fa
[05/06/24 19:05:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_730.fa
[05/06/24 19:05:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_731.fa
[05/06/24 19:05:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_732.fa
[05/06/24 19:05:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_733.fa
[05/06/24 19:05:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_734.fa
[05/06/24 19:05:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_735.fa
[05/06/24 19:05:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_736.fa
[05/06/24 19:05:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_737.fa
[05/06/24 19:05:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_738.fa
[05/06/24 19:05:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_739.fa
[05/06/24 19:05:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_740.fa
[05/06/24 19:05:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_741.fa
[05/06/24 19:05:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_742.fa
[05/06/24 19:05:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_743.fa
[05/06/24 19:05:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_744.fa
[05/06/24 19:05:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_745.fa
[05/06/24 19:05:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_746.fa
[05/06/24 19:05:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_747.fa
[05/06/24 19:05:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_748.fa
[05/06/24 19:05:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_749.fa
[05/06/24 19:05:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_750.fa
[05/06/24 19:05:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_751.fa
[05/06/24 19:05:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_752.fa
[05/06/24 19:05:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_753.fa
[05/06/24 19:05:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_754.fa
[05/06/24 19:05:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_755.fa
[05/06/24 19:05:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_756.fa
[05/06/24 19:05:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_757.fa
[05/06/24 19:05:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_758.fa
[05/06/24 19:05:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_759.fa
[05/06/24 19:05:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_760.fa
[05/06/24 19:05:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_761.fa
[05/06/24 19:05:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_762.fa
[05/06/24 19:05:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_763.fa
[05/06/24 19:05:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_764.fa
[05/06/24 19:05:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_765.fa
[05/06/24 19:05:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_766.fa
[05/06/24 19:05:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_767.fa
[05/06/24 19:05:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_768.fa
[05/06/24 19:05:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_769.fa
[05/06/24 19:05:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_770.fa
[05/06/24 19:05:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_771.fa
[05/06/24 19:05:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_772.fa
[05/06/24 19:05:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_773.fa
[05/06/24 19:05:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_774.fa
[05/06/24 19:05:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_775.fa
[05/06/24 19:05:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_776.fa
[05/06/24 19:05:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_777.fa
[05/06/24 19:05:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_778.fa
[05/06/24 19:05:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_779.fa
[05/06/24 19:05:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_780.fa
[05/06/24 19:05:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_781.fa
[05/06/24 19:05:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_782.fa
[05/06/24 19:05:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_783.fa
[05/06/24 19:05:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_784.fa
[05/06/24 19:05:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_785.fa
[05/06/24 19:05:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_786.fa
[05/06/24 19:05:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_787.fa
[05/06/24 19:05:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_788.fa
[05/06/24 19:05:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_789.fa
[05/06/24 19:05:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_790.fa
[05/06/24 19:05:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_791.fa
[05/06/24 19:05:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_792.fa
[05/06/24 19:05:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_793.fa
[05/06/24 19:05:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_794.fa
[05/06/24 19:05:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_795.fa
[05/06/24 19:05:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_796.fa
[05/06/24 19:05:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_797.fa
[05/06/24 19:05:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_798.fa
[05/06/24 19:05:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_799.fa
[05/06/24 19:05:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_800.fa
[05/06/24 19:05:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_801.fa
[05/06/24 19:05:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_802.fa
[05/06/24 19:05:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_803.fa
[05/06/24 19:05:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_804.fa
[05/06/24 19:05:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_805.fa
[05/06/24 19:05:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_806.fa
[05/06/24 19:05:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_807.fa
[05/06/24 19:05:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_808.fa
[05/06/24 19:05:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_809.fa
[05/06/24 19:05:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_810.fa
[05/06/24 19:05:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_811.fa
[05/06/24 19:05:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_812.fa
[05/06/24 19:05:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_813.fa
[05/06/24 19:05:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_814.fa
[05/06/24 19:05:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_815.fa
[05/06/24 19:05:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_816.fa
[05/06/24 19:05:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_817.fa
[05/06/24 19:05:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_818.fa
[05/06/24 19:05:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_819.fa
[05/06/24 19:05:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_820.fa
[05/06/24 19:05:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_821.fa
[05/06/24 19:05:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_822.fa
[05/06/24 19:05:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_823.fa
[05/06/24 19:05:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_824.fa
[05/06/24 19:05:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_825.fa
[05/06/24 19:05:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_826.fa
[05/06/24 19:05:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_827.fa
[05/06/24 19:05:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_828.fa
[05/06/24 19:05:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_829.fa
[05/06/24 19:05:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_830.fa
[05/06/24 19:05:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_831.fa
[05/06/24 19:05:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_832.fa
[05/06/24 19:05:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_833.fa
[05/06/24 19:05:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_834.fa
[05/06/24 19:05:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_835.fa
[05/06/24 19:05:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_836.fa
[05/06/24 19:05:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_837.fa
[05/06/24 19:05:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_838.fa
[05/06/24 19:05:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_839.fa
[05/06/24 19:05:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_840.fa
[05/06/24 19:05:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_841.fa
[05/06/24 19:05:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_842.fa
[05/06/24 19:05:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_843.fa
[05/06/24 19:05:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_844.fa
[05/06/24 19:05:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_845.fa
[05/06/24 19:05:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_846.fa
[05/06/24 19:05:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_847.fa
[05/06/24 19:05:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_848.fa
[05/06/24 19:05:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_849.fa
[05/06/24 19:05:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_850.fa
[05/06/24 19:05:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_851.fa
[05/06/24 19:05:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_852.fa
[05/06/24 19:05:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_853.fa
[05/06/24 19:05:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_854.fa
[05/06/24 19:05:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_855.fa
[05/06/24 19:05:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_856.fa
[05/06/24 19:05:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_857.fa
[05/06/24 19:05:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_858.fa
[05/06/24 19:05:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_859.fa
[05/06/24 19:05:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_860.fa
[05/06/24 19:05:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_861.fa
[05/06/24 19:05:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_862.fa
[05/06/24 19:05:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_863.fa
[05/06/24 19:05:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_864.fa
[05/06/24 19:05:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_865.fa
[05/06/24 19:05:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_866.fa
[05/06/24 19:05:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_867.fa
[05/06/24 19:05:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_868.fa
[05/06/24 19:05:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_869.fa
[05/06/24 19:05:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_870.fa
[05/06/24 19:05:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_871.fa
[05/06/24 19:05:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_872.fa
[05/06/24 19:05:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_873.fa
[05/06/24 19:05:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_874.fa
[05/06/24 19:05:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_875.fa
[05/06/24 19:05:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_876.fa
[05/06/24 19:05:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_877.fa
[05/06/24 19:05:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_878.fa
[05/06/24 19:05:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_879.fa
[05/06/24 19:05:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_880.fa
[05/06/24 19:05:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_881.fa
[05/06/24 19:05:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_882.fa
[05/06/24 19:05:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_883.fa
[05/06/24 19:05:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_884.fa
[05/06/24 19:05:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_885.fa
[05/06/24 19:05:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_886.fa
[05/06/24 19:05:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_887.fa
[05/06/24 19:05:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_888.fa
[05/06/24 19:05:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_889.fa
[05/06/24 19:05:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_890.fa
[05/06/24 19:05:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_891.fa
[05/06/24 19:05:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_892.fa
[05/06/24 19:05:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_893.fa
[05/06/24 19:05:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_894.fa
[05/06/24 19:05:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_895.fa
[05/06/24 19:05:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_896.fa
[05/06/24 19:05:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_897.fa
[05/06/24 19:05:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_898.fa
[05/06/24 19:05:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_899.fa
[05/06/24 19:05:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_900.fa
[05/06/24 19:05:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_902.fa
[05/06/24 19:05:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_901.fa
[05/06/24 19:05:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_903.fa
[05/06/24 19:05:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_904.fa
[05/06/24 19:05:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_905.fa
[05/06/24 19:05:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_906.fa
[05/06/24 19:05:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_907.fa
[05/06/24 19:05:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_908.fa
[05/06/24 19:05:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_909.fa
[05/06/24 19:05:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_910.fa
[05/06/24 19:05:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_911.fa
[05/06/24 19:05:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_912.fa
[05/06/24 19:05:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_913.fa
[05/06/24 19:05:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_914.fa
[05/06/24 19:05:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_915.fa
[05/06/24 19:05:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_916.fa
[05/06/24 19:05:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_917.fa
[05/06/24 19:05:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_918.fa
[05/06/24 19:05:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_919.fa
[05/06/24 19:05:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_920.fa
[05/06/24 19:05:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_921.fa
[05/06/24 19:05:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_922.fa
[05/06/24 19:05:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_923.fa
[05/06/24 19:05:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_924.fa
[05/06/24 19:05:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_925.fa
[05/06/24 19:05:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_926.fa
[05/06/24 19:05:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_927.fa
[05/06/24 19:05:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_928.fa
[05/06/24 19:05:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_929.fa
[05/06/24 19:05:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_930.fa
[05/06/24 19:05:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_931.fa
[05/06/24 19:05:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_932.fa
[05/06/24 19:05:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_933.fa
[05/06/24 19:05:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_934.fa
[05/06/24 19:05:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_935.fa
[05/06/24 19:05:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_936.fa
[05/06/24 19:05:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_937.fa
[05/06/24 19:05:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_938.fa
[05/06/24 19:05:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_939.fa
[05/06/24 19:05:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_940.fa
[05/06/24 19:05:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_941.fa
[05/06/24 19:05:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_942.fa
[05/06/24 19:05:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_943.fa
[05/06/24 19:05:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_944.fa
[05/06/24 19:05:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_945.fa
[05/06/24 19:05:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_946.fa
[05/06/24 19:05:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_947.fa
[05/06/24 19:05:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_948.fa
[05/06/24 19:05:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_949.fa
[05/06/24 19:05:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_950.fa
[05/06/24 19:05:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_951.fa
[05/06/24 19:05:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_952.fa
[05/06/24 19:05:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_953.fa
[05/06/24 19:05:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_954.fa
[05/06/24 19:05:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_955.fa
[05/06/24 19:05:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_956.fa
[05/06/24 19:05:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_957.fa
[05/06/24 19:05:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_958.fa
[05/06/24 19:05:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_959.fa
[05/06/24 19:05:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_960.fa
[05/06/24 19:05:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_961.fa
[05/06/24 19:05:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_962.fa
[05/06/24 19:05:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_963.fa
[05/06/24 19:05:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_964.fa
[05/06/24 19:05:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_965.fa
[05/06/24 19:05:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_966.fa
[05/06/24 19:05:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_967.fa
[05/06/24 19:05:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_968.fa
[05/06/24 19:05:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_969.fa
[05/06/24 19:05:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_970.fa
[05/06/24 19:05:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_971.fa
[05/06/24 19:05:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_972.fa
[05/06/24 19:05:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_973.fa
[05/06/24 19:05:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_974.fa
[05/06/24 19:05:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_975.fa
[05/06/24 19:05:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_976.fa
[05/06/24 19:05:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_977.fa
[05/06/24 19:05:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_978.fa
[05/06/24 19:05:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_979.fa
[05/06/24 19:05:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_980.fa
[05/06/24 19:05:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_981.fa
[05/06/24 19:05:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_982.fa
[05/06/24 19:05:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_983.fa
[05/06/24 19:05:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_984.fa
[05/06/24 19:05:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_985.fa
[05/06/24 19:05:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_986.fa
[05/06/24 19:05:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_987.fa
[05/06/24 19:05:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_988.fa
[05/06/24 19:05:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_989.fa
[05/06/24 19:05:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_990.fa
[05/06/24 19:05:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_991.fa
[05/06/24 19:05:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_992.fa
[05/06/24 19:05:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_993.fa
[05/06/24 19:05:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_994.fa
[05/06/24 19:05:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_995.fa
[05/06/24 19:05:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_996.fa
[05/06/24 19:05:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_997.fa
[05/06/24 19:05:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_998.fa
[05/06/24 19:05:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_999.fa
[05/06/24 19:05:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1000.fa
[05/06/24 19:05:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1001.fa
[05/06/24 19:05:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1002.fa
[05/06/24 19:05:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1003.fa
[05/06/24 19:05:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1004.fa
[05/06/24 19:05:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1005.fa
[05/06/24 19:05:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1006.fa
[05/06/24 19:05:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1007.fa
[05/06/24 19:05:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1008.fa
[05/06/24 19:05:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1009.fa
[05/06/24 19:05:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1010.fa
[05/06/24 19:05:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1011.fa
[05/06/24 19:05:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1012.fa
[05/06/24 19:05:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1013.fa
[05/06/24 19:05:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1014.fa
[05/06/24 19:05:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1015.fa
[05/06/24 19:05:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1016.fa
[05/06/24 19:05:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1017.fa
[05/06/24 19:05:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1018.fa
[05/06/24 19:05:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1019.fa
[05/06/24 19:05:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1020.fa
[05/06/24 19:05:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1021.fa
[05/06/24 19:05:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1022.fa
[05/06/24 19:05:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1023.fa
[05/06/24 19:05:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1024.fa
[05/06/24 19:05:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1025.fa
[05/06/24 19:05:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1026.fa
[05/06/24 19:05:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1027.fa
[05/06/24 19:05:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1028.fa
[05/06/24 19:05:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1029.fa
[05/06/24 19:05:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1030.fa
[05/06/24 19:05:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1031.fa
[05/06/24 19:05:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1032.fa
[05/06/24 19:05:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1033.fa
[05/06/24 19:05:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1034.fa
[05/06/24 19:05:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1035.fa
[05/06/24 19:05:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1036.fa
[05/06/24 19:05:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1037.fa
[05/06/24 19:05:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1038.fa
[05/06/24 19:05:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1039.fa
[05/06/24 19:05:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1040.fa
[05/06/24 19:05:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1041.fa
[05/06/24 19:05:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1042.fa
[05/06/24 19:05:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1043.fa
[05/06/24 19:05:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1044.fa
[05/06/24 19:05:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1045.fa
[05/06/24 19:05:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1046.fa
[05/06/24 19:05:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1047.fa
[05/06/24 19:05:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1048.fa
[05/06/24 19:05:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1049.fa
[05/06/24 19:05:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1050.fa
[05/06/24 19:05:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1051.fa
[05/06/24 19:05:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1052.fa
[05/06/24 19:05:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1053.fa
[05/06/24 19:06:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1054.fa
[05/06/24 19:06:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1055.fa
[05/06/24 19:06:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1056.fa
[05/06/24 19:06:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1057.fa
[05/06/24 19:06:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1058.fa
[05/06/24 19:06:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1059.fa
[05/06/24 19:06:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1060.fa
[05/06/24 19:06:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1061.fa
[05/06/24 19:06:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1062.fa
[05/06/24 19:06:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1063.fa
[05/06/24 19:06:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1064.fa
[05/06/24 19:06:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1065.fa
[05/06/24 19:06:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1066.fa
[05/06/24 19:06:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1067.fa
[05/06/24 19:06:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1068.fa
[05/06/24 19:06:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1069.fa
[05/06/24 19:06:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1070.fa
[05/06/24 19:06:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1071.fa
[05/06/24 19:06:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1072.fa
[05/06/24 19:06:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1073.fa
[05/06/24 19:06:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1074.fa
[05/06/24 19:06:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1075.fa
[05/06/24 19:06:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1076.fa
[05/06/24 19:06:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1077.fa
[05/06/24 19:06:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1078.fa
[05/06/24 19:06:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1079.fa
[05/06/24 19:06:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1080.fa
[05/06/24 19:06:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1081.fa
[05/06/24 19:06:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1082.fa
[05/06/24 19:06:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1083.fa
[05/06/24 19:06:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1084.fa
[05/06/24 19:06:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1085.fa
[05/06/24 19:06:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1086.fa
[05/06/24 19:06:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1087.fa
[05/06/24 19:06:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1088.fa
[05/06/24 19:06:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1089.fa
[05/06/24 19:06:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1090.fa
[05/06/24 19:06:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1091.fa
[05/06/24 19:06:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1092.fa
[05/06/24 19:06:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1093.fa
[05/06/24 19:06:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1094.fa
[05/06/24 19:06:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1095.fa
[05/06/24 19:06:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1096.fa
[05/06/24 19:06:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1097.fa
[05/06/24 19:06:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1098.fa
[05/06/24 19:06:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1099.fa
[05/06/24 19:06:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1100.fa
[05/06/24 19:06:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1101.fa
[05/06/24 19:06:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1102.fa
[05/06/24 19:06:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1103.fa
[05/06/24 19:06:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1104.fa
[05/06/24 19:06:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1105.fa
[05/06/24 19:06:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1106.fa
[05/06/24 19:06:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1107.fa
[05/06/24 19:06:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1108.fa
[05/06/24 19:06:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1109.fa
[05/06/24 19:06:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1110.fa
[05/06/24 19:06:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1111.fa
[05/06/24 19:06:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1112.fa
[05/06/24 19:06:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1113.fa
[05/06/24 19:06:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1114.fa
[05/06/24 19:06:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1115.fa
[05/06/24 19:06:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1116.fa
[05/06/24 19:06:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1117.fa
[05/06/24 19:06:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1118.fa
[05/06/24 19:06:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1119.fa
[05/06/24 19:06:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1120.fa
[05/06/24 19:06:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1121.fa
[05/06/24 19:06:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1122.fa
[05/06/24 19:06:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1123.fa
[05/06/24 19:06:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1124.fa
[05/06/24 19:06:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1125.fa
[05/06/24 19:06:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1126.fa
[05/06/24 19:06:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1127.fa
[05/06/24 19:06:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1128.fa
[05/06/24 19:06:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1129.fa
[05/06/24 19:06:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1130.fa
[05/06/24 19:06:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1131.fa
[05/06/24 19:06:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1132.fa
[05/06/24 19:06:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1133.fa
[05/06/24 19:06:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1134.fa
[05/06/24 19:06:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1135.fa
[05/06/24 19:06:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1136.fa
[05/06/24 19:06:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1137.fa
[05/06/24 19:06:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1138.fa
[05/06/24 19:06:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1139.fa
[05/06/24 19:06:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1140.fa
[05/06/24 19:06:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1141.fa
[05/06/24 19:06:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1142.fa
[05/06/24 19:06:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1143.fa
[05/06/24 19:06:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1144.fa
[05/06/24 19:06:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1145.fa
[05/06/24 19:06:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1146.fa
[05/06/24 19:06:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1147.fa
[05/06/24 19:06:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1148.fa
[05/06/24 19:06:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1149.fa
[05/06/24 19:06:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1150.fa
[05/06/24 19:06:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1151.fa
[05/06/24 19:06:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1152.fa
[05/06/24 19:06:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1153.fa
[05/06/24 19:06:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1154.fa
[05/06/24 19:06:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1155.fa
[05/06/24 19:06:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1156.fa
[05/06/24 19:06:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1157.fa
[05/06/24 19:06:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1158.fa
[05/06/24 19:06:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1159.fa
[05/06/24 19:06:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1160.fa
[05/06/24 19:06:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1161.fa
[05/06/24 19:06:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1162.fa
[05/06/24 19:06:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1163.fa
[05/06/24 19:06:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1164.fa
[05/06/24 19:06:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1165.fa
[05/06/24 19:06:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1166.fa
[05/06/24 19:06:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1167.fa
[05/06/24 19:06:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1168.fa
[05/06/24 19:06:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1169.fa
[05/06/24 19:06:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1170.fa
[05/06/24 19:06:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1171.fa
[05/06/24 19:06:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1172.fa
[05/06/24 19:06:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1173.fa
[05/06/24 19:06:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1174.fa
[05/06/24 19:06:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1175.fa
[05/06/24 19:06:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1176.fa
[05/06/24 19:06:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1177.fa
[05/06/24 19:06:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1178.fa
[05/06/24 19:06:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1179.fa
[05/06/24 19:06:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1180.fa
[05/06/24 19:06:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1181.fa
[05/06/24 19:06:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1182.fa
[05/06/24 19:06:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1183.fa
[05/06/24 19:06:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1184.fa
[05/06/24 19:06:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1185.fa
[05/06/24 19:06:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1186.fa
[05/06/24 19:06:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1187.fa
[05/06/24 19:06:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1188.fa
[05/06/24 19:06:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1189.fa
[05/06/24 19:06:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1190.fa
[05/06/24 19:06:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1191.fa
[05/06/24 19:06:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1192.fa
[05/06/24 19:06:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1193.fa
[05/06/24 19:06:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1194.fa
[05/06/24 19:06:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1195.fa
[05/06/24 19:06:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1196.fa
[05/06/24 19:06:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1197.fa
[05/06/24 19:06:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1198.fa
[05/06/24 19:06:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1199.fa
[05/06/24 19:06:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1200.fa
[05/06/24 19:06:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1201.fa
[05/06/24 19:06:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1202.fa
[05/06/24 19:06:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1203.fa
[05/06/24 19:06:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1204.fa
[05/06/24 19:06:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1205.fa
[05/06/24 19:06:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1206.fa
[05/06/24 19:06:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1207.fa
[05/06/24 19:06:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1208.fa
[05/06/24 19:06:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1209.fa
[05/06/24 19:06:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1210.fa
[05/06/24 19:06:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1211.fa
[05/06/24 19:06:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1212.fa
[05/06/24 19:06:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1213.fa
[05/06/24 19:06:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1214.fa
[05/06/24 19:06:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1215.fa
[05/06/24 19:06:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1216.fa
[05/06/24 19:06:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1217.fa
[05/06/24 19:06:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1218.fa
[05/06/24 19:06:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1219.fa
[05/06/24 19:06:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1220.fa
[05/06/24 19:06:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1221.fa
[05/06/24 19:06:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1222.fa
[05/06/24 19:06:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1223.fa
[05/06/24 19:06:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1224.fa
[05/06/24 19:06:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1225.fa
[05/06/24 19:06:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1226.fa
[05/06/24 19:06:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1227.fa
[05/06/24 19:06:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1228.fa
[05/06/24 19:06:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1229.fa
[05/06/24 19:06:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1230.fa
[05/06/24 19:06:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1231.fa
[05/06/24 19:06:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1232.fa
[05/06/24 19:06:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1233.fa
[05/06/24 19:06:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1234.fa
[05/06/24 19:06:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1235.fa
[05/06/24 19:06:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1236.fa
[05/06/24 19:06:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1237.fa
[05/06/24 19:06:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1238.fa
[05/06/24 19:06:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1239.fa
[05/06/24 19:06:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1240.fa
[05/06/24 19:06:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1241.fa
[05/06/24 19:06:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1242.fa
[05/06/24 19:06:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1243.fa
[05/06/24 19:06:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1244.fa
[05/06/24 19:06:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1245.fa
[05/06/24 19:06:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1246.fa
[05/06/24 19:06:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1247.fa
[05/06/24 19:06:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1248.fa
[05/06/24 19:06:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1249.fa
[05/06/24 19:06:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1250.fa
[05/06/24 19:06:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1251.fa
[05/06/24 19:06:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1252.fa
[05/06/24 19:06:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1253.fa
[05/06/24 19:06:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1254.fa
[05/06/24 19:06:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1255.fa
[05/06/24 19:06:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1256.fa
[05/06/24 19:06:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1257.fa
[05/06/24 19:06:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1258.fa
[05/06/24 19:06:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1259.fa
[05/06/24 19:06:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1260.fa
[05/06/24 19:06:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1261.fa
[05/06/24 19:06:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1262.fa
[05/06/24 19:06:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1263.fa
[05/06/24 19:06:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1264.fa
[05/06/24 19:06:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1265.fa
[05/06/24 19:06:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1266.fa
[05/06/24 19:06:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1267.fa
[05/06/24 19:06:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1268.fa
[05/06/24 19:06:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1269.fa
[05/06/24 19:06:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1270.fa
[05/06/24 19:06:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1271.fa
[05/06/24 19:06:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1272.fa
[05/06/24 19:06:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1273.fa
[05/06/24 19:06:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1274.fa
[05/06/24 19:06:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1275.fa
[05/06/24 19:06:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1276.fa
[05/06/24 19:06:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1277.fa
[05/06/24 19:06:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1278.fa
[05/06/24 19:06:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1279.fa
[05/06/24 19:06:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1280.fa
[05/06/24 19:06:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1281.fa
[05/06/24 19:06:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1282.fa
[05/06/24 19:06:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1283.fa
[05/06/24 19:06:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1284.fa
[05/06/24 19:06:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1285.fa
[05/06/24 19:06:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1286.fa
[05/06/24 19:06:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1287.fa
[05/06/24 19:06:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1288.fa
[05/06/24 19:06:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1289.fa
[05/06/24 19:06:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1290.fa
[05/06/24 19:06:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1291.fa
[05/06/24 19:06:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1292.fa
[05/06/24 19:06:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1293.fa
[05/06/24 19:06:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1294.fa
[05/06/24 19:06:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1295.fa
[05/06/24 19:06:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1296.fa
[05/06/24 19:06:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1297.fa
[05/06/24 19:06:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1298.fa
[05/06/24 19:06:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1299.fa
[05/06/24 19:06:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1300.fa
[05/06/24 19:06:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1301.fa
[05/06/24 19:06:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1302.fa
[05/06/24 19:06:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1303.fa
[05/06/24 19:06:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1304.fa
[05/06/24 19:06:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1305.fa
[05/06/24 19:06:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1306.fa
[05/06/24 19:06:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1307.fa
[05/06/24 19:06:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1308.fa
[05/06/24 19:06:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1309.fa
[05/06/24 19:06:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1310.fa
[05/06/24 19:06:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1311.fa
[05/06/24 19:06:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1312.fa
[05/06/24 19:06:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1313.fa
[05/06/24 19:06:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1314.fa
[05/06/24 19:06:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1315.fa
[05/06/24 19:06:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1316.fa
[05/06/24 19:06:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1317.fa
[05/06/24 19:06:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1318.fa
[05/06/24 19:06:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1319.fa
[05/06/24 19:06:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1320.fa
[05/06/24 19:06:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1321.fa
[05/06/24 19:06:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1322.fa
[05/06/24 19:06:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1323.fa
[05/06/24 19:06:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1324.fa
[05/06/24 19:06:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1325.fa
[05/06/24 19:06:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1326.fa
[05/06/24 19:06:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1327.fa
[05/06/24 19:06:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1328.fa
[05/06/24 19:06:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1329.fa
[05/06/24 19:06:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1330.fa
[05/06/24 19:06:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1331.fa
[05/06/24 19:06:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1332.fa
[05/06/24 19:06:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1333.fa
[05/06/24 19:06:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1334.fa
[05/06/24 19:06:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1335.fa
[05/06/24 19:06:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1336.fa
[05/06/24 19:06:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1337.fa
[05/06/24 19:06:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1338.fa
[05/06/24 19:06:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1339.fa
[05/06/24 19:06:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1340.fa
[05/06/24 19:06:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1341.fa
[05/06/24 19:06:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1342.fa
[05/06/24 19:06:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1343.fa
[05/06/24 19:06:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1344.fa
[05/06/24 19:06:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1345.fa
[05/06/24 19:06:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1346.fa
[05/06/24 19:06:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1347.fa
[05/06/24 19:06:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1348.fa
[05/06/24 19:06:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1349.fa
[05/06/24 19:06:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1350.fa
[05/06/24 19:06:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1351.fa
[05/06/24 19:06:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1352.fa
[05/06/24 19:06:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1353.fa
[05/06/24 19:06:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1354.fa
[05/06/24 19:06:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1355.fa
[05/06/24 19:06:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1356.fa
[05/06/24 19:06:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1357.fa
[05/06/24 19:06:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1358.fa
[05/06/24 19:06:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1359.fa
[05/06/24 19:06:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1360.fa
[05/06/24 19:06:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1361.fa
[05/06/24 19:06:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1362.fa
[05/06/24 19:06:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1363.fa
[05/06/24 19:06:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1364.fa
[05/06/24 19:06:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1365.fa
[05/06/24 19:06:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1366.fa
[05/06/24 19:06:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1367.fa
[05/06/24 19:06:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1368.fa
[05/06/24 19:06:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1369.fa
[05/06/24 19:06:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1370.fa
[05/06/24 19:06:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1371.fa
[05/06/24 19:06:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1372.fa
[05/06/24 19:06:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1373.fa
[05/06/24 19:06:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1374.fa
[05/06/24 19:06:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1375.fa
[05/06/24 19:06:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1376.fa
[05/06/24 19:06:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1377.fa
[05/06/24 19:06:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1378.fa
[05/06/24 19:06:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1379.fa
[05/06/24 19:06:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1380.fa
[05/06/24 19:06:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1381.fa
[05/06/24 19:06:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1382.fa
[05/06/24 19:06:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1383.fa
[05/06/24 19:06:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1385.fa
[05/06/24 19:06:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1384.fa
[05/06/24 19:06:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1386.fa
[05/06/24 19:06:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1387.fa
[05/06/24 19:06:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1388.fa
[05/06/24 19:06:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1389.fa
[05/06/24 19:06:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1390.fa
[05/06/24 19:06:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1391.fa
[05/06/24 19:06:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1392.fa
[05/06/24 19:06:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1393.fa
[05/06/24 19:06:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1394.fa
[05/06/24 19:06:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1395.fa
[05/06/24 19:06:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1396.fa
[05/06/24 19:06:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1397.fa
[05/06/24 19:06:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1398.fa
[05/06/24 19:06:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1399.fa
[05/06/24 19:06:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1400.fa
[05/06/24 19:06:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1401.fa
[05/06/24 19:06:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1402.fa
[05/06/24 19:06:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1403.fa
[05/06/24 19:06:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1404.fa
[05/06/24 19:06:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1405.fa
[05/06/24 19:06:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1406.fa
[05/06/24 19:06:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1407.fa
[05/06/24 19:06:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1408.fa
[05/06/24 19:06:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1409.fa
[05/06/24 19:06:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1410.fa
[05/06/24 19:06:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1411.fa
[05/06/24 19:06:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1412.fa
[05/06/24 19:06:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1413.fa
[05/06/24 19:06:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1414.fa
[05/06/24 19:06:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1415.fa
[05/06/24 19:06:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1416.fa
[05/06/24 19:06:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1417.fa
[05/06/24 19:06:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1418.fa
[05/06/24 19:06:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1419.fa
[05/06/24 19:06:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1420.fa
[05/06/24 19:06:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1421.fa
[05/06/24 19:06:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1422.fa
[05/06/24 19:06:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1423.fa
[05/06/24 19:06:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1424.fa
[05/06/24 19:06:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1425.fa
[05/06/24 19:06:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1426.fa
[05/06/24 19:06:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1427.fa
[05/06/24 19:06:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1428.fa
[05/06/24 19:06:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1429.fa
[05/06/24 19:06:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1430.fa
[05/06/24 19:06:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1431.fa
[05/06/24 19:06:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1432.fa
[05/06/24 19:06:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1433.fa
[05/06/24 19:06:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1434.fa
[05/06/24 19:06:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1435.fa
[05/06/24 19:06:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1436.fa
[05/06/24 19:06:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1437.fa
[05/06/24 19:06:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1438.fa
[05/06/24 19:06:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1439.fa
[05/06/24 19:06:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1440.fa
[05/06/24 19:06:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1441.fa
[05/06/24 19:06:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1442.fa
[05/06/24 19:06:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1443.fa
[05/06/24 19:06:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1444.fa
[05/06/24 19:06:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1445.fa
[05/06/24 19:06:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1446.fa
[05/06/24 19:06:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1447.fa
[05/06/24 19:06:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1448.fa
[05/06/24 19:06:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1449.fa
[05/06/24 19:06:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1450.fa
[05/06/24 19:06:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1451.fa
[05/06/24 19:06:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1452.fa
[05/06/24 19:06:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1453.fa
[05/06/24 19:06:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1454.fa
[05/06/24 19:06:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1455.fa
[05/06/24 19:06:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1456.fa
[05/06/24 19:06:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1458.fa
[05/06/24 19:06:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1457.fa
[05/06/24 19:06:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1459.fa
[05/06/24 19:06:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1460.fa
[05/06/24 19:06:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1461.fa
[05/06/24 19:06:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1462.fa
[05/06/24 19:06:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1463.fa
[05/06/24 19:06:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1464.fa
[05/06/24 19:06:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1465.fa
[05/06/24 19:06:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1466.fa
[05/06/24 19:06:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1467.fa
[05/06/24 19:06:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1468.fa
[05/06/24 19:06:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1469.fa
[05/06/24 19:06:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1470.fa
[05/06/24 19:06:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1471.fa
[05/06/24 19:06:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1472.fa
[05/06/24 19:06:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1473.fa
[05/06/24 19:06:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1474.fa
[05/06/24 19:06:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1475.fa
[05/06/24 19:06:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1476.fa
[05/06/24 19:06:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1477.fa
[05/06/24 19:06:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1478.fa
[05/06/24 19:06:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1479.fa
[05/06/24 19:06:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1480.fa
[05/06/24 19:06:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1481.fa
[05/06/24 19:06:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1482.fa
[05/06/24 19:06:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1483.fa
[05/06/24 19:06:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1484.fa
[05/06/24 19:06:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1485.fa
[05/06/24 19:06:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1486.fa
[05/06/24 19:06:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1487.fa
[05/06/24 19:06:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1488.fa
[05/06/24 19:06:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1489.fa
[05/06/24 19:06:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1490.fa
[05/06/24 19:06:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1491.fa
[05/06/24 19:06:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1492.fa
[05/06/24 19:06:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1493.fa
[05/06/24 19:06:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1494.fa
[05/06/24 19:06:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1495.fa
[05/06/24 19:06:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1496.fa
[05/06/24 19:06:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1497.fa
[05/06/24 19:06:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1498.fa
[05/06/24 19:06:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1499.fa
[05/06/24 19:06:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1500.fa
[05/06/24 19:06:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1501.fa
[05/06/24 19:06:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1502.fa
[05/06/24 19:06:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1503.fa
[05/06/24 19:06:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1504.fa
[05/06/24 19:06:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1505.fa
[05/06/24 19:06:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1506.fa
[05/06/24 19:06:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1507.fa
[05/06/24 19:06:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1508.fa
[05/06/24 19:06:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1509.fa
[05/06/24 19:06:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1510.fa
[05/06/24 19:06:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1511.fa
[05/06/24 19:06:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1512.fa
[05/06/24 19:06:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1513.fa
[05/06/24 19:06:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1514.fa
[05/06/24 19:06:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1515.fa
[05/06/24 19:06:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1516.fa
[05/06/24 19:06:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1517.fa
[05/06/24 19:06:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1518.fa
[05/06/24 19:06:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1519.fa
[05/06/24 19:06:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1520.fa
[05/06/24 19:06:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1521.fa
[05/06/24 19:06:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1522.fa
[05/06/24 19:06:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1523.fa
[05/06/24 19:06:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1524.fa
[05/06/24 19:06:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1525.fa
[05/06/24 19:06:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1526.fa
[05/06/24 19:06:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1527.fa
[05/06/24 19:06:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1528.fa
[05/06/24 19:06:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1529.fa
[05/06/24 19:06:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1530.fa
[05/06/24 19:06:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1531.fa
[05/06/24 19:06:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1532.fa
[05/06/24 19:06:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1533.fa
[05/06/24 19:06:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1534.fa
[05/06/24 19:06:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1535.fa
[05/06/24 19:06:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1536.fa
[05/06/24 19:06:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1537.fa
[05/06/24 19:06:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1538.fa
[05/06/24 19:06:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1539.fa
[05/06/24 19:06:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1540.fa
[05/06/24 19:06:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1541.fa
[05/06/24 19:06:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1542.fa
[05/06/24 19:06:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1543.fa
[05/06/24 19:06:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1545.fa
[05/06/24 19:06:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1544.fa
[05/06/24 19:06:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1546.fa
[05/06/24 19:06:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1547.fa
[05/06/24 19:06:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1548.fa
[05/06/24 19:06:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1549.fa
[05/06/24 19:06:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1550.fa
[05/06/24 19:06:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1551.fa
[05/06/24 19:06:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1552.fa
[05/06/24 19:06:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1553.fa
[05/06/24 19:06:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1554.fa
[05/06/24 19:06:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1555.fa
[05/06/24 19:06:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1556.fa
[05/06/24 19:06:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1557.fa
[05/06/24 19:06:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1558.fa
[05/06/24 19:06:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1559.fa
[05/06/24 19:06:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1560.fa
[05/06/24 19:06:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1561.fa
[05/06/24 19:06:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1562.fa
[05/06/24 19:06:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1563.fa
[05/06/24 19:07:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1564.fa
[05/06/24 19:07:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1565.fa
[05/06/24 19:07:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1566.fa
[05/06/24 19:07:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1567.fa
[05/06/24 19:07:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1568.fa
[05/06/24 19:07:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1569.fa
[05/06/24 19:07:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1570.fa
[05/06/24 19:07:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1571.fa
[05/06/24 19:07:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1572.fa
[05/06/24 19:07:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1573.fa
[05/06/24 19:07:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1574.fa
[05/06/24 19:07:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1575.fa
[05/06/24 19:07:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1576.fa
[05/06/24 19:07:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1577.fa
[05/06/24 19:07:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1578.fa
[05/06/24 19:07:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1579.fa
[05/06/24 19:07:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1580.fa
[05/06/24 19:07:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1581.fa
[05/06/24 19:07:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1582.fa
[05/06/24 19:07:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1583.fa
[05/06/24 19:07:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1584.fa
[05/06/24 19:07:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1585.fa
[05/06/24 19:07:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1586.fa
[05/06/24 19:07:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1587.fa
[05/06/24 19:07:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1588.fa
[05/06/24 19:07:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1589.fa
[05/06/24 19:07:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1590.fa
[05/06/24 19:07:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1591.fa
[05/06/24 19:07:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1592.fa
[05/06/24 19:07:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1593.fa
[05/06/24 19:07:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1594.fa
[05/06/24 19:07:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1595.fa
[05/06/24 19:07:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1596.fa
[05/06/24 19:07:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1597.fa
[05/06/24 19:07:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1598.fa
[05/06/24 19:07:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1599.fa
[05/06/24 19:07:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1600.fa
[05/06/24 19:07:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1601.fa
[05/06/24 19:07:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1602.fa
[05/06/24 19:07:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1603.fa
[05/06/24 19:07:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1604.fa
[05/06/24 19:07:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1605.fa
[05/06/24 19:07:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1606.fa
[05/06/24 19:07:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1607.fa
[05/06/24 19:07:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1608.fa
[05/06/24 19:07:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1609.fa
[05/06/24 19:07:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1610.fa
[05/06/24 19:07:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1611.fa
[05/06/24 19:07:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1612.fa
[05/06/24 19:07:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1613.fa
[05/06/24 19:07:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1614.fa
[05/06/24 19:07:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1615.fa
[05/06/24 19:07:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1616.fa
[05/06/24 19:07:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1617.fa
[05/06/24 19:07:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1618.fa
[05/06/24 19:07:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1619.fa
[05/06/24 19:07:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1620.fa
[05/06/24 19:07:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1621.fa
[05/06/24 19:07:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1622.fa
[05/06/24 19:07:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1623.fa
[05/06/24 19:07:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1624.fa
[05/06/24 19:07:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1625.fa
[05/06/24 19:07:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1626.fa
[05/06/24 19:07:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1627.fa
[05/06/24 19:07:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1628.fa
[05/06/24 19:07:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1629.fa
[05/06/24 19:07:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1630.fa
[05/06/24 19:07:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1631.fa
[05/06/24 19:07:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1632.fa
[05/06/24 19:07:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1633.fa
[05/06/24 19:07:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1634.fa
[05/06/24 19:07:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1635.fa
[05/06/24 19:07:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1636.fa
[05/06/24 19:07:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1637.fa
[05/06/24 19:07:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1638.fa
[05/06/24 19:07:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1639.fa
[05/06/24 19:07:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1640.fa
[05/06/24 19:07:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1641.fa
[05/06/24 19:07:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1642.fa
[05/06/24 19:07:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1643.fa
[05/06/24 19:07:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1644.fa
[05/06/24 19:07:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1645.fa
[05/06/24 19:07:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1646.fa
[05/06/24 19:07:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1647.fa
[05/06/24 19:07:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1648.fa
[05/06/24 19:07:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1649.fa
[05/06/24 19:07:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1650.fa
[05/06/24 19:07:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1651.fa
[05/06/24 19:07:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1652.fa
[05/06/24 19:07:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1653.fa
[05/06/24 19:07:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1654.fa
[05/06/24 19:07:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1655.fa
[05/06/24 19:07:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1656.fa
[05/06/24 19:07:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1657.fa
[05/06/24 19:07:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1658.fa
[05/06/24 19:07:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1659.fa
[05/06/24 19:07:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1660.fa
[05/06/24 19:07:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1661.fa
[05/06/24 19:07:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1662.fa
[05/06/24 19:07:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1663.fa
[05/06/24 19:07:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1664.fa
[05/06/24 19:07:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1665.fa
[05/06/24 19:07:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1666.fa
[05/06/24 19:07:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1667.fa
[05/06/24 19:07:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1668.fa
[05/06/24 19:07:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1669.fa
[05/06/24 19:07:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1670.fa
[05/06/24 19:07:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1671.fa
[05/06/24 19:07:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1672.fa
[05/06/24 19:07:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1673.fa
[05/06/24 19:07:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1674.fa
[05/06/24 19:07:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1675.fa
[05/06/24 19:07:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1676.fa
[05/06/24 19:07:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1677.fa
[05/06/24 19:07:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1678.fa
[05/06/24 19:07:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1679.fa
[05/06/24 19:07:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1680.fa
[05/06/24 19:07:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1681.fa
[05/06/24 19:07:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1682.fa
[05/06/24 19:07:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1683.fa
[05/06/24 19:07:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1684.fa
[05/06/24 19:07:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1685.fa
[05/06/24 19:07:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1686.fa
[05/06/24 19:07:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1687.fa
[05/06/24 19:07:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1688.fa
[05/06/24 19:07:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1689.fa
[05/06/24 19:07:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1690.fa
[05/06/24 19:07:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1691.fa
[05/06/24 19:07:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1692.fa
[05/06/24 19:07:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1693.fa
[05/06/24 19:07:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1694.fa
[05/06/24 19:07:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1695.fa
[05/06/24 19:07:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1696.fa
[05/06/24 19:07:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1697.fa
[05/06/24 19:07:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1698.fa
[05/06/24 19:07:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1699.fa
[05/06/24 19:07:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1700.fa
[05/06/24 19:07:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1702.fa
[05/06/24 19:07:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1701.fa
[05/06/24 19:07:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1703.fa
[05/06/24 19:07:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1704.fa
[05/06/24 19:07:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1705.fa
[05/06/24 19:07:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1706.fa
[05/06/24 19:07:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1707.fa
[05/06/24 19:07:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1708.fa
[05/06/24 19:07:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1709.fa
[05/06/24 19:07:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1710.fa
[05/06/24 19:07:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1711.fa
[05/06/24 19:07:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1712.fa
[05/06/24 19:07:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1713.fa
[05/06/24 19:07:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1714.fa
[05/06/24 19:07:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1715.fa
[05/06/24 19:07:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1716.fa
[05/06/24 19:07:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1717.fa
[05/06/24 19:07:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1718.fa
[05/06/24 19:07:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1719.fa
[05/06/24 19:07:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1720.fa
[05/06/24 19:07:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1721.fa
[05/06/24 19:07:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1722.fa
[05/06/24 19:07:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1723.fa
[05/06/24 19:07:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1724.fa
[05/06/24 19:07:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1725.fa
[05/06/24 19:07:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1726.fa
[05/06/24 19:07:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1727.fa
[05/06/24 19:07:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1728.fa
[05/06/24 19:07:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1729.fa
[05/06/24 19:07:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1730.fa
[05/06/24 19:07:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1731.fa
[05/06/24 19:07:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1732.fa
[05/06/24 19:07:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1733.fa
[05/06/24 19:07:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1734.fa
[05/06/24 19:07:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1735.fa
[05/06/24 19:07:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1736.fa
[05/06/24 19:07:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1737.fa
[05/06/24 19:07:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1738.fa
[05/06/24 19:07:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1739.fa
[05/06/24 19:07:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1740.fa
[05/06/24 19:07:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1741.fa
[05/06/24 19:07:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1742.fa
[05/06/24 19:07:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1743.fa
[05/06/24 19:07:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1744.fa
[05/06/24 19:07:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1745.fa
[05/06/24 19:07:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1747.fa
[05/06/24 19:07:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1746.fa
[05/06/24 19:07:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1748.fa
[05/06/24 19:07:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1749.fa
[05/06/24 19:07:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1750.fa
[05/06/24 19:07:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1751.fa
[05/06/24 19:07:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1752.fa
[05/06/24 19:07:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1753.fa
[05/06/24 19:07:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1754.fa
[05/06/24 19:07:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1755.fa
[05/06/24 19:07:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1756.fa
[05/06/24 19:07:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1757.fa
[05/06/24 19:07:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1758.fa
[05/06/24 19:07:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1759.fa
[05/06/24 19:07:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1760.fa
[05/06/24 19:07:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1761.fa
[05/06/24 19:07:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1762.fa
[05/06/24 19:07:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1763.fa
[05/06/24 19:07:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1764.fa
[05/06/24 19:07:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1765.fa
[05/06/24 19:07:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1766.fa
[05/06/24 19:07:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1767.fa
[05/06/24 19:07:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1768.fa
[05/06/24 19:07:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1769.fa
[05/06/24 19:07:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1770.fa
[05/06/24 19:07:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1771.fa
[05/06/24 19:07:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1772.fa
[05/06/24 19:07:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1773.fa
[05/06/24 19:07:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1774.fa
[05/06/24 19:07:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1775.fa
[05/06/24 19:07:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1776.fa
[05/06/24 19:07:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1777.fa
[05/06/24 19:07:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1778.fa
[05/06/24 19:07:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1779.fa
[05/06/24 19:07:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1780.fa
[05/06/24 19:07:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1781.fa
[05/06/24 19:07:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1782.fa
[05/06/24 19:07:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1783.fa
[05/06/24 19:07:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1784.fa
[05/06/24 19:07:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1785.fa
[05/06/24 19:07:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1786.fa
[05/06/24 19:07:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1787.fa
[05/06/24 19:07:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1788.fa
[05/06/24 19:07:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1789.fa
[05/06/24 19:07:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1790.fa
[05/06/24 19:07:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1791.fa
[05/06/24 19:07:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1792.fa
[05/06/24 19:07:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1793.fa
[05/06/24 19:07:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1794.fa
[05/06/24 19:07:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1795.fa
[05/06/24 19:07:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1796.fa
[05/06/24 19:07:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1797.fa
[05/06/24 19:07:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1798.fa
[05/06/24 19:07:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1799.fa
[05/06/24 19:07:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1800.fa
[05/06/24 19:07:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1801.fa
[05/06/24 19:07:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1802.fa
[05/06/24 19:07:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1803.fa
[05/06/24 19:07:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1804.fa
[05/06/24 19:07:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1805.fa
[05/06/24 19:07:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1806.fa
[05/06/24 19:07:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1807.fa
[05/06/24 19:07:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1808.fa
[05/06/24 19:07:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1809.fa
[05/06/24 19:07:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1810.fa
[05/06/24 19:07:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1811.fa
[05/06/24 19:07:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1812.fa
[05/06/24 19:07:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1813.fa
[05/06/24 19:07:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1814.fa
[05/06/24 19:07:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1815.fa
[05/06/24 19:07:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1816.fa
[05/06/24 19:07:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1817.fa
[05/06/24 19:07:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1818.fa
[05/06/24 19:07:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1819.fa
[05/06/24 19:07:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1820.fa
[05/06/24 19:07:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1821.fa
[05/06/24 19:07:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1822.fa
[05/06/24 19:07:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1823.fa
[05/06/24 19:07:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1824.fa
[05/06/24 19:07:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1825.fa
[05/06/24 19:07:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1826.fa
[05/06/24 19:07:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1827.fa
[05/06/24 19:07:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1828.fa
[05/06/24 19:07:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1829.fa
[05/06/24 19:07:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1830.fa
[05/06/24 19:07:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1831.fa
[05/06/24 19:07:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1832.fa
[05/06/24 19:07:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1833.fa
[05/06/24 19:07:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1834.fa
[05/06/24 19:07:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1835.fa
[05/06/24 19:07:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1836.fa
[05/06/24 19:07:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1837.fa
[05/06/24 19:07:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1838.fa
[05/06/24 19:07:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1839.fa
[05/06/24 19:07:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1840.fa
[05/06/24 19:07:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1841.fa
[05/06/24 19:07:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1842.fa
[05/06/24 19:07:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1843.fa
[05/06/24 19:07:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1844.fa
[05/06/24 19:07:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1845.fa
[05/06/24 19:07:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1846.fa
[05/06/24 19:07:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1847.fa
[05/06/24 19:07:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1848.fa
[05/06/24 19:07:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1849.fa
[05/06/24 19:07:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1850.fa
[05/06/24 19:07:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1851.fa
[05/06/24 19:07:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1852.fa
[05/06/24 19:07:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1853.fa
[05/06/24 19:07:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1854.fa
[05/06/24 19:07:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1855.fa
[05/06/24 19:07:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1856.fa
[05/06/24 19:07:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1857.fa
[05/06/24 19:07:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1858.fa
[05/06/24 19:07:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1859.fa
[05/06/24 19:07:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1860.fa
[05/06/24 19:07:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1861.fa
[05/06/24 19:07:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1862.fa
[05/06/24 19:07:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1863.fa
[05/06/24 19:07:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1864.fa
[05/06/24 19:07:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1865.fa
[05/06/24 19:07:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1866.fa
[05/06/24 19:07:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1867.fa
[05/06/24 19:07:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1868.fa
[05/06/24 19:07:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1869.fa
[05/06/24 19:07:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1870.fa
[05/06/24 19:07:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1871.fa
[05/06/24 19:07:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1872.fa
[05/06/24 19:07:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1873.fa
[05/06/24 19:07:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1874.fa
[05/06/24 19:07:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1875.fa
[05/06/24 19:07:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1876.fa
[05/06/24 19:07:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1877.fa
[05/06/24 19:07:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1878.fa
[05/06/24 19:07:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1879.fa
[05/06/24 19:07:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1880.fa
[05/06/24 19:07:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1881.fa
[05/06/24 19:07:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1882.fa
[05/06/24 19:07:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1883.fa
[05/06/24 19:07:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1884.fa
[05/06/24 19:07:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1885.fa
[05/06/24 19:07:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1886.fa
[05/06/24 19:07:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1887.fa
[05/06/24 19:07:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1888.fa
[05/06/24 19:07:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1889.fa
[05/06/24 19:07:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1890.fa
[05/06/24 19:07:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1891.fa
[05/06/24 19:07:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1892.fa
[05/06/24 19:07:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1893.fa
[05/06/24 19:07:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1894.fa
[05/06/24 19:07:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1895.fa
[05/06/24 19:07:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1896.fa
[05/06/24 19:07:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1897.fa
[05/06/24 19:07:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1898.fa
[05/06/24 19:07:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1899.fa
[05/06/24 19:07:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1900.fa
[05/06/24 19:07:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1901.fa
[05/06/24 19:07:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1902.fa
[05/06/24 19:07:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1903.fa
[05/06/24 19:07:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1904.fa
[05/06/24 19:07:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1905.fa
[05/06/24 19:07:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1906.fa
[05/06/24 19:07:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1907.fa
[05/06/24 19:07:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1908.fa
[05/06/24 19:07:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1909.fa
[05/06/24 19:07:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1910.fa
[05/06/24 19:07:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1911.fa
[05/06/24 19:07:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1912.fa
[05/06/24 19:07:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1913.fa
[05/06/24 19:07:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1914.fa
[05/06/24 19:07:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1915.fa
[05/06/24 19:07:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1916.fa
[05/06/24 19:07:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1917.fa
[05/06/24 19:07:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1918.fa
[05/06/24 19:07:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1919.fa
[05/06/24 19:07:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1920.fa
[05/06/24 19:07:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1921.fa
[05/06/24 19:07:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1922.fa
[05/06/24 19:07:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1923.fa
[05/06/24 19:07:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1924.fa
[05/06/24 19:07:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1925.fa
[05/06/24 19:07:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1926.fa
[05/06/24 19:07:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1927.fa
[05/06/24 19:07:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1928.fa
[05/06/24 19:07:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1929.fa
[05/06/24 19:07:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1930.fa
[05/06/24 19:07:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1931.fa
[05/06/24 19:07:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1932.fa
[05/06/24 19:07:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1933.fa
[05/06/24 19:07:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1934.fa
[05/06/24 19:07:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1935.fa
[05/06/24 19:07:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1936.fa
[05/06/24 19:07:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1937.fa
[05/06/24 19:07:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1938.fa
[05/06/24 19:07:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1939.fa
[05/06/24 19:07:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1940.fa
[05/06/24 19:07:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1941.fa
[05/06/24 19:07:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1942.fa
[05/06/24 19:07:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1943.fa
[05/06/24 19:07:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1944.fa
[05/06/24 19:07:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1945.fa
[05/06/24 19:07:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1946.fa
[05/06/24 19:07:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1947.fa
[05/06/24 19:07:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1948.fa
[05/06/24 19:07:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1949.fa
[05/06/24 19:07:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1950.fa
[05/06/24 19:07:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1951.fa
[05/06/24 19:07:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1952.fa
[05/06/24 19:07:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1953.fa
[05/06/24 19:07:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1954.fa
[05/06/24 19:07:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1955.fa
[05/06/24 19:07:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1956.fa
[05/06/24 19:07:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1957.fa
[05/06/24 19:07:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1958.fa
[05/06/24 19:07:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1959.fa
[05/06/24 19:07:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1960.fa
[05/06/24 19:07:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1961.fa
[05/06/24 19:07:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1962.fa
[05/06/24 19:07:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1963.fa
[05/06/24 19:07:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1964.fa
[05/06/24 19:07:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1965.fa
[05/06/24 19:07:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1966.fa
[05/06/24 19:07:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1967.fa
[05/06/24 19:07:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1968.fa
[05/06/24 19:07:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1969.fa
[05/06/24 19:07:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1970.fa
[05/06/24 19:07:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1971.fa
[05/06/24 19:07:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1972.fa
[05/06/24 19:07:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1973.fa
[05/06/24 19:07:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1974.fa
[05/06/24 19:07:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1975.fa
[05/06/24 19:07:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1976.fa
[05/06/24 19:07:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1977.fa
[05/06/24 19:07:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1978.fa
[05/06/24 19:07:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1979.fa
[05/06/24 19:07:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1980.fa
[05/06/24 19:07:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1981.fa
[05/06/24 19:07:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1982.fa
[05/06/24 19:07:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1983.fa
[05/06/24 19:07:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1984.fa
[05/06/24 19:07:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1985.fa
[05/06/24 19:07:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1986.fa
[05/06/24 19:07:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1987.fa
[05/06/24 19:07:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1988.fa
[05/06/24 19:07:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1989.fa
[05/06/24 19:07:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1990.fa
[05/06/24 19:07:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1991.fa
[05/06/24 19:07:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1992.fa
[05/06/24 19:07:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1993.fa
[05/06/24 19:07:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1994.fa
[05/06/24 19:07:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1995.fa
[05/06/24 19:07:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1996.fa
[05/06/24 19:07:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1997.fa
[05/06/24 19:07:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1998.fa
[05/06/24 19:07:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_1999.fa
[05/06/24 19:07:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2000.fa
[05/06/24 19:07:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2001.fa
[05/06/24 19:07:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2002.fa
[05/06/24 19:07:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2003.fa
[05/06/24 19:07:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2004.fa
[05/06/24 19:07:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2005.fa
[05/06/24 19:07:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2006.fa
[05/06/24 19:07:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2007.fa
[05/06/24 19:07:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2008.fa
[05/06/24 19:07:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2009.fa
[05/06/24 19:07:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2010.fa
[05/06/24 19:07:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2011.fa
[05/06/24 19:07:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2012.fa
[05/06/24 19:07:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2013.fa
[05/06/24 19:07:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2014.fa
[05/06/24 19:07:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2015.fa
[05/06/24 19:07:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2016.fa
[05/06/24 19:07:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2017.fa
[05/06/24 19:07:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2018.fa
[05/06/24 19:07:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2019.fa
[05/06/24 19:07:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2020.fa
[05/06/24 19:07:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2021.fa
[05/06/24 19:07:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2022.fa
[05/06/24 19:07:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2023.fa
[05/06/24 19:07:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2024.fa
[05/06/24 19:07:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2025.fa
[05/06/24 19:07:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2026.fa
[05/06/24 19:07:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2027.fa
[05/06/24 19:07:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2028.fa
[05/06/24 19:07:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2029.fa
[05/06/24 19:07:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2030.fa
[05/06/24 19:07:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2031.fa
[05/06/24 19:07:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2032.fa
[05/06/24 19:07:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2033.fa
[05/06/24 19:07:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2034.fa
[05/06/24 19:07:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2035.fa
[05/06/24 19:07:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2036.fa
[05/06/24 19:07:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2037.fa
[05/06/24 19:07:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2038.fa
[05/06/24 19:07:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2039.fa
[05/06/24 19:07:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2040.fa
[05/06/24 19:07:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2041.fa
[05/06/24 19:07:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2042.fa
[05/06/24 19:07:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2043.fa
[05/06/24 19:07:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2044.fa
[05/06/24 19:07:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2045.fa
[05/06/24 19:07:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2046.fa
[05/06/24 19:07:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2047.fa
[05/06/24 19:07:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2048.fa
[05/06/24 19:07:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2049.fa
[05/06/24 19:07:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2050.fa
[05/06/24 19:07:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2051.fa
[05/06/24 19:07:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2052.fa
[05/06/24 19:07:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2053.fa
[05/06/24 19:07:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2054.fa
[05/06/24 19:07:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2055.fa
[05/06/24 19:07:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2056.fa
[05/06/24 19:07:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2057.fa
[05/06/24 19:07:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2058.fa
[05/06/24 19:07:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2059.fa
[05/06/24 19:07:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2060.fa
[05/06/24 19:07:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2061.fa
[05/06/24 19:07:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2062.fa
[05/06/24 19:07:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2063.fa
[05/06/24 19:07:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2064.fa
[05/06/24 19:07:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2065.fa
[05/06/24 19:07:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2066.fa
[05/06/24 19:07:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2067.fa
[05/06/24 19:07:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2068.fa
[05/06/24 19:07:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2069.fa
[05/06/24 19:07:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2070.fa
[05/06/24 19:07:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2071.fa
[05/06/24 19:07:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2072.fa
[05/06/24 19:07:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2073.fa
[05/06/24 19:07:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2074.fa
[05/06/24 19:07:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2075.fa
[05/06/24 19:07:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2076.fa
[05/06/24 19:07:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2077.fa
[05/06/24 19:07:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2078.fa
[05/06/24 19:07:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2079.fa
[05/06/24 19:07:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2080.fa
[05/06/24 19:07:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2081.fa
[05/06/24 19:07:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2082.fa
[05/06/24 19:07:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2083.fa
[05/06/24 19:07:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2084.fa
[05/06/24 19:07:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2085.fa
[05/06/24 19:07:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2086.fa
[05/06/24 19:07:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2087.fa
[05/06/24 19:07:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2088.fa
[05/06/24 19:07:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2089.fa
[05/06/24 19:07:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2090.fa
[05/06/24 19:07:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2091.fa
[05/06/24 19:07:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2092.fa
[05/06/24 19:07:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2093.fa
[05/06/24 19:07:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2094.fa
[05/06/24 19:07:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2095.fa
[05/06/24 19:07:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2096.fa
[05/06/24 19:07:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2097.fa
[05/06/24 19:07:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2098.fa
[05/06/24 19:07:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2099.fa
[05/06/24 19:07:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2100.fa
[05/06/24 19:07:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2101.fa
[05/06/24 19:07:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2102.fa
[05/06/24 19:07:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2103.fa
[05/06/24 19:07:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2104.fa
[05/06/24 19:07:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2105.fa
[05/06/24 19:07:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2106.fa
[05/06/24 19:07:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2107.fa
[05/06/24 19:07:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2108.fa
[05/06/24 19:07:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2109.fa
[05/06/24 19:07:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2110.fa
[05/06/24 19:07:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2111.fa
[05/06/24 19:07:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2112.fa
[05/06/24 19:07:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2113.fa
[05/06/24 19:07:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2114.fa
[05/06/24 19:07:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2115.fa
[05/06/24 19:07:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2116.fa
[05/06/24 19:07:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2117.fa
[05/06/24 19:07:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2118.fa
[05/06/24 19:07:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2119.fa
[05/06/24 19:07:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2120.fa
[05/06/24 19:07:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2121.fa
[05/06/24 19:07:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2122.fa
[05/06/24 19:07:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2123.fa
[05/06/24 19:07:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2124.fa
[05/06/24 19:07:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2125.fa
[05/06/24 19:07:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2126.fa
[05/06/24 19:07:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2127.fa
[05/06/24 19:07:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2128.fa
[05/06/24 19:07:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2129.fa
[05/06/24 19:07:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2130.fa
[05/06/24 19:07:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2131.fa
[05/06/24 19:07:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2132.fa
[05/06/24 19:07:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2133.fa
[05/06/24 19:07:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2134.fa
[05/06/24 19:07:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2135.fa
[05/06/24 19:07:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2136.fa
[05/06/24 19:07:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2137.fa
[05/06/24 19:07:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2138.fa
[05/06/24 19:07:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2139.fa
[05/06/24 19:07:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2140.fa
[05/06/24 19:07:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2141.fa
[05/06/24 19:07:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2142.fa
[05/06/24 19:07:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2143.fa
[05/06/24 19:07:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2144.fa
[05/06/24 19:07:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2145.fa
[05/06/24 19:07:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2146.fa
[05/06/24 19:07:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2147.fa
[05/06/24 19:07:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2148.fa
[05/06/24 19:07:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2149.fa
[05/06/24 19:07:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2150.fa
[05/06/24 19:07:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2151.fa
[05/06/24 19:07:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2152.fa
[05/06/24 19:07:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2153.fa
[05/06/24 19:07:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2154.fa
[05/06/24 19:07:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2155.fa
[05/06/24 19:07:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2156.fa
[05/06/24 19:07:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2157.fa
[05/06/24 19:07:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2158.fa
[05/06/24 19:07:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2159.fa
[05/06/24 19:07:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2160.fa
[05/06/24 19:07:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2161.fa
[05/06/24 19:07:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2162.fa
[05/06/24 19:07:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2163.fa
[05/06/24 19:07:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2164.fa
[05/06/24 19:07:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2165.fa
[05/06/24 19:07:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2166.fa
[05/06/24 19:07:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2167.fa
[05/06/24 19:07:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2168.fa
[05/06/24 19:07:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2169.fa
[05/06/24 19:07:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2170.fa
[05/06/24 19:07:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2171.fa
[05/06/24 19:07:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2172.fa
[05/06/24 19:07:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2173.fa
[05/06/24 19:07:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2174.fa
[05/06/24 19:08:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2175.fa
[05/06/24 19:08:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2176.fa
[05/06/24 19:08:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2177.fa
[05/06/24 19:08:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2178.fa
[05/06/24 19:08:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2179.fa
[05/06/24 19:08:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2180.fa
[05/06/24 19:08:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2181.fa
[05/06/24 19:08:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2182.fa
[05/06/24 19:08:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2183.fa
[05/06/24 19:08:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2184.fa
[05/06/24 19:08:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2185.fa
[05/06/24 19:08:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2186.fa
[05/06/24 19:08:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2187.fa
[05/06/24 19:08:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2188.fa
[05/06/24 19:08:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2189.fa
[05/06/24 19:08:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2190.fa
[05/06/24 19:08:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2191.fa
[05/06/24 19:08:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2192.fa
[05/06/24 19:08:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2193.fa
[05/06/24 19:08:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2194.fa
[05/06/24 19:08:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2195.fa
[05/06/24 19:08:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2196.fa
[05/06/24 19:08:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2197.fa
[05/06/24 19:08:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2198.fa
[05/06/24 19:08:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2199.fa
[05/06/24 19:08:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2200.fa
[05/06/24 19:08:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2201.fa
[05/06/24 19:08:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2202.fa
[05/06/24 19:08:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2203.fa
[05/06/24 19:08:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2204.fa
[05/06/24 19:08:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2205.fa
[05/06/24 19:08:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2206.fa
[05/06/24 19:08:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2207.fa
[05/06/24 19:08:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2208.fa
[05/06/24 19:08:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2209.fa
[05/06/24 19:08:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2210.fa
[05/06/24 19:08:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2211.fa
[05/06/24 19:08:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2212.fa
[05/06/24 19:08:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2213.fa
[05/06/24 19:08:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2214.fa
[05/06/24 19:08:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2215.fa
[05/06/24 19:08:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2216.fa
[05/06/24 19:08:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2217.fa
[05/06/24 19:08:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2218.fa
[05/06/24 19:08:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2219.fa
[05/06/24 19:08:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2220.fa
[05/06/24 19:08:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2221.fa
[05/06/24 19:08:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2222.fa
[05/06/24 19:08:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2223.fa
[05/06/24 19:08:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2224.fa
[05/06/24 19:08:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2225.fa
[05/06/24 19:08:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2226.fa
[05/06/24 19:08:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2227.fa
[05/06/24 19:08:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2228.fa
[05/06/24 19:08:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2229.fa
[05/06/24 19:08:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2230.fa
[05/06/24 19:08:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2231.fa
[05/06/24 19:08:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2232.fa
[05/06/24 19:08:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2233.fa
[05/06/24 19:08:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2234.fa
[05/06/24 19:08:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2235.fa
[05/06/24 19:08:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2236.fa
[05/06/24 19:08:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2237.fa
[05/06/24 19:08:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2238.fa
[05/06/24 19:08:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2239.fa
[05/06/24 19:08:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2240.fa
[05/06/24 19:08:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2241.fa
[05/06/24 19:08:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2242.fa
[05/06/24 19:08:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2243.fa
[05/06/24 19:08:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2244.fa
[05/06/24 19:08:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2245.fa
[05/06/24 19:08:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2246.fa
[05/06/24 19:08:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2247.fa
[05/06/24 19:08:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2248.fa
[05/06/24 19:08:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2249.fa
[05/06/24 19:08:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2250.fa
[05/06/24 19:08:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2251.fa
[05/06/24 19:08:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2252.fa
[05/06/24 19:08:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2253.fa
[05/06/24 19:08:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2254.fa
[05/06/24 19:08:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2255.fa
[05/06/24 19:08:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2256.fa
[05/06/24 19:08:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2257.fa
[05/06/24 19:08:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2258.fa
[05/06/24 19:08:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2259.fa
[05/06/24 19:08:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2260.fa
[05/06/24 19:08:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2261.fa
[05/06/24 19:08:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2262.fa
[05/06/24 19:08:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2263.fa
[05/06/24 19:08:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2264.fa
[05/06/24 19:08:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2265.fa
[05/06/24 19:08:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2266.fa
[05/06/24 19:08:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2267.fa
[05/06/24 19:08:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2268.fa
[05/06/24 19:08:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2269.fa
[05/06/24 19:08:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2270.fa
[05/06/24 19:08:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2271.fa
[05/06/24 19:08:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2272.fa
[05/06/24 19:08:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2273.fa
[05/06/24 19:08:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2274.fa
[05/06/24 19:08:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2275.fa
[05/06/24 19:08:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2276.fa
[05/06/24 19:08:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2277.fa
[05/06/24 19:08:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2278.fa
[05/06/24 19:08:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2279.fa
[05/06/24 19:08:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2280.fa
[05/06/24 19:08:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2281.fa
[05/06/24 19:08:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2282.fa
[05/06/24 19:08:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2283.fa
[05/06/24 19:08:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2284.fa
[05/06/24 19:08:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2285.fa
[05/06/24 19:08:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2286.fa
[05/06/24 19:08:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2287.fa
[05/06/24 19:08:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2288.fa
[05/06/24 19:08:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2289.fa
[05/06/24 19:08:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2290.fa
[05/06/24 19:08:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2291.fa
[05/06/24 19:08:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2292.fa
[05/06/24 19:08:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2293.fa
[05/06/24 19:08:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2294.fa
[05/06/24 19:08:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2295.fa
[05/06/24 19:08:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2296.fa
[05/06/24 19:08:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2297.fa
[05/06/24 19:08:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2298.fa
[05/06/24 19:08:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2299.fa
[05/06/24 19:08:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2300.fa
[05/06/24 19:08:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2301.fa
[05/06/24 19:08:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2302.fa
[05/06/24 19:08:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2303.fa
[05/06/24 19:08:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2304.fa
[05/06/24 19:08:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2305.fa
[05/06/24 19:08:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2306.fa
[05/06/24 19:08:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2307.fa
[05/06/24 19:08:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2308.fa
[05/06/24 19:08:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2309.fa
[05/06/24 19:08:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2310.fa
[05/06/24 19:08:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2311.fa
[05/06/24 19:08:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2312.fa
[05/06/24 19:08:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2313.fa
[05/06/24 19:08:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2314.fa
[05/06/24 19:08:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2315.fa
[05/06/24 19:08:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2316.fa
[05/06/24 19:08:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2317.fa
[05/06/24 19:08:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2318.fa
[05/06/24 19:08:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2319.fa
[05/06/24 19:08:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2320.fa
[05/06/24 19:08:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2321.fa
[05/06/24 19:08:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2322.fa
[05/06/24 19:08:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2323.fa
[05/06/24 19:08:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2324.fa
[05/06/24 19:08:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2325.fa
[05/06/24 19:08:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2326.fa
[05/06/24 19:08:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2327.fa
[05/06/24 19:08:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2328.fa
[05/06/24 19:08:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2329.fa
[05/06/24 19:08:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2330.fa
[05/06/24 19:08:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2331.fa
[05/06/24 19:08:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2332.fa
[05/06/24 19:08:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2333.fa
[05/06/24 19:08:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2334.fa
[05/06/24 19:08:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2335.fa
[05/06/24 19:08:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2336.fa
[05/06/24 19:08:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2337.fa
[05/06/24 19:08:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2338.fa
[05/06/24 19:08:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2339.fa
[05/06/24 19:08:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2340.fa
[05/06/24 19:08:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2341.fa
[05/06/24 19:08:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2342.fa
[05/06/24 19:08:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2343.fa
[05/06/24 19:08:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2344.fa
[05/06/24 19:08:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2345.fa
[05/06/24 19:08:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2346.fa
[05/06/24 19:08:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2347.fa
[05/06/24 19:08:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2348.fa
[05/06/24 19:08:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2349.fa
[05/06/24 19:08:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2350.fa
[05/06/24 19:08:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2351.fa
[05/06/24 19:08:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2352.fa
[05/06/24 19:08:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2353.fa
[05/06/24 19:08:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2354.fa
[05/06/24 19:08:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2355.fa
[05/06/24 19:08:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2356.fa
[05/06/24 19:08:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2357.fa
[05/06/24 19:08:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2358.fa
[05/06/24 19:08:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2359.fa
[05/06/24 19:08:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2360.fa
[05/06/24 19:08:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2361.fa
[05/06/24 19:08:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2362.fa
[05/06/24 19:08:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2363.fa
[05/06/24 19:08:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2364.fa
[05/06/24 19:08:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2365.fa
[05/06/24 19:08:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2366.fa
[05/06/24 19:08:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2367.fa
[05/06/24 19:08:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2368.fa
[05/06/24 19:08:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2369.fa
[05/06/24 19:08:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2370.fa
[05/06/24 19:08:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2371.fa
[05/06/24 19:08:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2372.fa
[05/06/24 19:08:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2373.fa
[05/06/24 19:08:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2374.fa
[05/06/24 19:08:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2375.fa
[05/06/24 19:08:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2376.fa
[05/06/24 19:08:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2377.fa
[05/06/24 19:08:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2378.fa
[05/06/24 19:08:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2379.fa
[05/06/24 19:08:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2380.fa
[05/06/24 19:08:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2381.fa
[05/06/24 19:08:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2382.fa
[05/06/24 19:08:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2383.fa
[05/06/24 19:08:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2384.fa
[05/06/24 19:08:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2385.fa
[05/06/24 19:08:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2386.fa
[05/06/24 19:08:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2387.fa
[05/06/24 19:08:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2388.fa
[05/06/24 19:08:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2389.fa
[05/06/24 19:08:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2390.fa
[05/06/24 19:08:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2391.fa
[05/06/24 19:08:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2392.fa
[05/06/24 19:08:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2393.fa
[05/06/24 19:08:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2394.fa
[05/06/24 19:08:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2395.fa
[05/06/24 19:08:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2396.fa
[05/06/24 19:08:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2397.fa
[05/06/24 19:08:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2398.fa
[05/06/24 19:08:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2399.fa
[05/06/24 19:08:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2400.fa
[05/06/24 19:08:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2401.fa
[05/06/24 19:08:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2402.fa
[05/06/24 19:08:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2403.fa
[05/06/24 19:08:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2404.fa
[05/06/24 19:08:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2405.fa
[05/06/24 19:08:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2406.fa
[05/06/24 19:08:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2407.fa
[05/06/24 19:08:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2408.fa
[05/06/24 19:08:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2409.fa
[05/06/24 19:08:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2410.fa
[05/06/24 19:08:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2411.fa
[05/06/24 19:08:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2412.fa
[05/06/24 19:08:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2413.fa
[05/06/24 19:08:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2414.fa
[05/06/24 19:08:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2415.fa
[05/06/24 19:08:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2416.fa
[05/06/24 19:08:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2417.fa
[05/06/24 19:08:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2418.fa
[05/06/24 19:08:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2419.fa
[05/06/24 19:08:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2420.fa
[05/06/24 19:08:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2421.fa
[05/06/24 19:08:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2422.fa
[05/06/24 19:08:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2423.fa
[05/06/24 19:08:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2424.fa
[05/06/24 19:08:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2425.fa
[05/06/24 19:08:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2426.fa
[05/06/24 19:08:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2427.fa
[05/06/24 19:08:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2428.fa
[05/06/24 19:08:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2429.fa
[05/06/24 19:08:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2430.fa
[05/06/24 19:08:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2431.fa
[05/06/24 19:08:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2432.fa
[05/06/24 19:08:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2433.fa
[05/06/24 19:08:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2434.fa
[05/06/24 19:08:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2435.fa
[05/06/24 19:08:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2436.fa
[05/06/24 19:08:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2437.fa
[05/06/24 19:08:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2438.fa
[05/06/24 19:08:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2439.fa
[05/06/24 19:08:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2440.fa
[05/06/24 19:08:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2441.fa
[05/06/24 19:08:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2442.fa
[05/06/24 19:08:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2443.fa
[05/06/24 19:08:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2444.fa
[05/06/24 19:08:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2445.fa
[05/06/24 19:08:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2446.fa
[05/06/24 19:08:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2447.fa
[05/06/24 19:08:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2448.fa
[05/06/24 19:08:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2449.fa
[05/06/24 19:08:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2450.fa
[05/06/24 19:08:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2451.fa
[05/06/24 19:08:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2452.fa
[05/06/24 19:08:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2453.fa
[05/06/24 19:08:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2454.fa
[05/06/24 19:08:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2455.fa
[05/06/24 19:08:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2456.fa
[05/06/24 19:08:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2457.fa
[05/06/24 19:08:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2458.fa
[05/06/24 19:08:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2459.fa
[05/06/24 19:08:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2460.fa
[05/06/24 19:08:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2461.fa
[05/06/24 19:08:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2462.fa
[05/06/24 19:08:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2463.fa
[05/06/24 19:08:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2464.fa
[05/06/24 19:08:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2465.fa
[05/06/24 19:08:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2466.fa
[05/06/24 19:08:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2467.fa
[05/06/24 19:08:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2468.fa
[05/06/24 19:08:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2469.fa
[05/06/24 19:08:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2470.fa
[05/06/24 19:08:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2471.fa
[05/06/24 19:08:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2472.fa
[05/06/24 19:08:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2473.fa
[05/06/24 19:08:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2474.fa
[05/06/24 19:08:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2475.fa
[05/06/24 19:08:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2476.fa
[05/06/24 19:08:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2477.fa
[05/06/24 19:08:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2478.fa
[05/06/24 19:08:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2479.fa
[05/06/24 19:08:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2480.fa
[05/06/24 19:08:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2481.fa
[05/06/24 19:08:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2482.fa
[05/06/24 19:08:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2483.fa
[05/06/24 19:08:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2484.fa
[05/06/24 19:08:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2485.fa
[05/06/24 19:08:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2486.fa
[05/06/24 19:08:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2487.fa
[05/06/24 19:08:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2488.fa
[05/06/24 19:08:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2489.fa
[05/06/24 19:08:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2490.fa
[05/06/24 19:08:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2491.fa
[05/06/24 19:08:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2492.fa
[05/06/24 19:08:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2493.fa
[05/06/24 19:08:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2494.fa
[05/06/24 19:08:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2495.fa
[05/06/24 19:08:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2496.fa
[05/06/24 19:08:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2497.fa
[05/06/24 19:08:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2498.fa
[05/06/24 19:08:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2499.fa
[05/06/24 19:08:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2500.fa
[05/06/24 19:08:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2501.fa
[05/06/24 19:08:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2502.fa
[05/06/24 19:08:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2503.fa
[05/06/24 19:08:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2504.fa
[05/06/24 19:08:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2505.fa
[05/06/24 19:08:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2506.fa
[05/06/24 19:08:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2507.fa
[05/06/24 19:08:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2508.fa
[05/06/24 19:08:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2509.fa
[05/06/24 19:08:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2510.fa
[05/06/24 19:08:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2511.fa
[05/06/24 19:08:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2512.fa
[05/06/24 19:08:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2513.fa
[05/06/24 19:08:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2514.fa
[05/06/24 19:08:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2515.fa
[05/06/24 19:08:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2516.fa
[05/06/24 19:08:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2517.fa
[05/06/24 19:08:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2518.fa
[05/06/24 19:08:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2519.fa
[05/06/24 19:08:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2520.fa
[05/06/24 19:08:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2521.fa
[05/06/24 19:08:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2522.fa
[05/06/24 19:08:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2523.fa
[05/06/24 19:08:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2524.fa
[05/06/24 19:08:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2525.fa
[05/06/24 19:08:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2526.fa
[05/06/24 19:08:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2527.fa
[05/06/24 19:08:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2528.fa
[05/06/24 19:08:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2529.fa
[05/06/24 19:08:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2530.fa
[05/06/24 19:08:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2531.fa
[05/06/24 19:08:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2532.fa
[05/06/24 19:08:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2533.fa
[05/06/24 19:08:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2534.fa
[05/06/24 19:08:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2535.fa
[05/06/24 19:08:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2536.fa
[05/06/24 19:08:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2537.fa
[05/06/24 19:08:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2538.fa
[05/06/24 19:08:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2539.fa
[05/06/24 19:08:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2540.fa
[05/06/24 19:08:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2541.fa
[05/06/24 19:08:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2542.fa
[05/06/24 19:08:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2543.fa
[05/06/24 19:08:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2544.fa
[05/06/24 19:08:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2545.fa
[05/06/24 19:08:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2546.fa
[05/06/24 19:08:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2547.fa
[05/06/24 19:08:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2548.fa
[05/06/24 19:08:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2549.fa
[05/06/24 19:08:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2550.fa
[05/06/24 19:08:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2551.fa
[05/06/24 19:08:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2552.fa
[05/06/24 19:08:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2553.fa
[05/06/24 19:08:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2554.fa
[05/06/24 19:08:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2555.fa
[05/06/24 19:08:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2556.fa
[05/06/24 19:08:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2557.fa
[05/06/24 19:08:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2558.fa
[05/06/24 19:08:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2559.fa
[05/06/24 19:08:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2560.fa
[05/06/24 19:08:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2561.fa
[05/06/24 19:08:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2562.fa
[05/06/24 19:08:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2563.fa
[05/06/24 19:08:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2564.fa
[05/06/24 19:08:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2565.fa
[05/06/24 19:08:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2566.fa
[05/06/24 19:08:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2567.fa
[05/06/24 19:08:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2568.fa
[05/06/24 19:08:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2569.fa
[05/06/24 19:08:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2570.fa
[05/06/24 19:08:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2571.fa
[05/06/24 19:08:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2572.fa
[05/06/24 19:08:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2573.fa
[05/06/24 19:08:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2574.fa
[05/06/24 19:08:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2575.fa
[05/06/24 19:08:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2576.fa
[05/06/24 19:08:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2577.fa
[05/06/24 19:08:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2579.fa
[05/06/24 19:08:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2578.fa
[05/06/24 19:08:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2580.fa
[05/06/24 19:08:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2581.fa
[05/06/24 19:08:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2582.fa
[05/06/24 19:08:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2583.fa
[05/06/24 19:08:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2584.fa
[05/06/24 19:08:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2585.fa
[05/06/24 19:08:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2586.fa
[05/06/24 19:08:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2587.fa
[05/06/24 19:08:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2588.fa
[05/06/24 19:08:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2589.fa
[05/06/24 19:08:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2590.fa
[05/06/24 19:08:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2591.fa
[05/06/24 19:08:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2592.fa
[05/06/24 19:08:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2593.fa
[05/06/24 19:08:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2594.fa
[05/06/24 19:08:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2595.fa
[05/06/24 19:08:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2596.fa
[05/06/24 19:08:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2597.fa
[05/06/24 19:08:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2598.fa
[05/06/24 19:08:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2599.fa
[05/06/24 19:08:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2600.fa
[05/06/24 19:08:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2601.fa
[05/06/24 19:08:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2602.fa
[05/06/24 19:08:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2603.fa
[05/06/24 19:08:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2604.fa
[05/06/24 19:08:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2605.fa
[05/06/24 19:08:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2606.fa
[05/06/24 19:08:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2607.fa
[05/06/24 19:08:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2608.fa
[05/06/24 19:08:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2609.fa
[05/06/24 19:08:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2610.fa
[05/06/24 19:08:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2611.fa
[05/06/24 19:08:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2612.fa
[05/06/24 19:08:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2613.fa
[05/06/24 19:08:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2614.fa
[05/06/24 19:08:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2615.fa
[05/06/24 19:08:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2616.fa
[05/06/24 19:08:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2617.fa
[05/06/24 19:08:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2618.fa
[05/06/24 19:08:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2619.fa
[05/06/24 19:08:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2620.fa
[05/06/24 19:08:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2621.fa
[05/06/24 19:08:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2622.fa
[05/06/24 19:08:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2623.fa
[05/06/24 19:08:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2624.fa
[05/06/24 19:08:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2625.fa
[05/06/24 19:08:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2626.fa
[05/06/24 19:08:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2627.fa
[05/06/24 19:08:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2628.fa
[05/06/24 19:08:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2629.fa
[05/06/24 19:08:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2630.fa
[05/06/24 19:08:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2631.fa
[05/06/24 19:08:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2632.fa
[05/06/24 19:08:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2633.fa
[05/06/24 19:08:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2634.fa
[05/06/24 19:08:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2635.fa
[05/06/24 19:08:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2636.fa
[05/06/24 19:08:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2637.fa
[05/06/24 19:08:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2638.fa
[05/06/24 19:08:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2639.fa
[05/06/24 19:08:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2640.fa
[05/06/24 19:08:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2641.fa
[05/06/24 19:08:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2642.fa
[05/06/24 19:08:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2643.fa
[05/06/24 19:08:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2644.fa
[05/06/24 19:08:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2645.fa
[05/06/24 19:08:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2646.fa
[05/06/24 19:08:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2647.fa
[05/06/24 19:08:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2648.fa
[05/06/24 19:08:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2649.fa
[05/06/24 19:08:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2650.fa
[05/06/24 19:08:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2651.fa
[05/06/24 19:08:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2652.fa
[05/06/24 19:08:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2653.fa
[05/06/24 19:08:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2654.fa
[05/06/24 19:08:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2655.fa
[05/06/24 19:08:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2656.fa
[05/06/24 19:08:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2657.fa
[05/06/24 19:08:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2658.fa
[05/06/24 19:08:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2659.fa
[05/06/24 19:08:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2660.fa
[05/06/24 19:08:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2661.fa
[05/06/24 19:08:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2662.fa
[05/06/24 19:08:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2663.fa
[05/06/24 19:08:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2664.fa
[05/06/24 19:08:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2665.fa
[05/06/24 19:08:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2666.fa
[05/06/24 19:08:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2667.fa
[05/06/24 19:08:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2668.fa
[05/06/24 19:08:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2669.fa
[05/06/24 19:08:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2670.fa
[05/06/24 19:08:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2671.fa
[05/06/24 19:08:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2672.fa
[05/06/24 19:08:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2673.fa
[05/06/24 19:08:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2674.fa
[05/06/24 19:08:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2675.fa
[05/06/24 19:08:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2676.fa
[05/06/24 19:08:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2677.fa
[05/06/24 19:08:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2678.fa
[05/06/24 19:08:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2679.fa
[05/06/24 19:08:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2680.fa
[05/06/24 19:08:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2681.fa
[05/06/24 19:08:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2682.fa
[05/06/24 19:08:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2683.fa
[05/06/24 19:08:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2684.fa
[05/06/24 19:08:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2685.fa
[05/06/24 19:08:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2686.fa
[05/06/24 19:08:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2687.fa
[05/06/24 19:08:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2688.fa
[05/06/24 19:08:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2689.fa
[05/06/24 19:08:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2690.fa
[05/06/24 19:08:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2691.fa
[05/06/24 19:08:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2692.fa
[05/06/24 19:08:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2693.fa
[05/06/24 19:08:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2694.fa
[05/06/24 19:08:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2695.fa
[05/06/24 19:08:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2696.fa
[05/06/24 19:08:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2697.fa
[05/06/24 19:08:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2698.fa
[05/06/24 19:08:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2699.fa
[05/06/24 19:08:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2700.fa
[05/06/24 19:08:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2701.fa
[05/06/24 19:08:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2702.fa
[05/06/24 19:08:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2703.fa
[05/06/24 19:08:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2704.fa
[05/06/24 19:08:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2705.fa
[05/06/24 19:08:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2706.fa
[05/06/24 19:08:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2707.fa
[05/06/24 19:08:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2708.fa
[05/06/24 19:08:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2709.fa
[05/06/24 19:08:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2710.fa
[05/06/24 19:08:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2711.fa
[05/06/24 19:08:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2712.fa
[05/06/24 19:08:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2713.fa
[05/06/24 19:08:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2714.fa
[05/06/24 19:08:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2715.fa
[05/06/24 19:08:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2716.fa
[05/06/24 19:08:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2717.fa
[05/06/24 19:08:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2718.fa
[05/06/24 19:08:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2719.fa
[05/06/24 19:08:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2720.fa
[05/06/24 19:08:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2721.fa
[05/06/24 19:08:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2722.fa
[05/06/24 19:08:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2723.fa
[05/06/24 19:08:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2724.fa
[05/06/24 19:08:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2725.fa
[05/06/24 19:08:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2726.fa
[05/06/24 19:08:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2727.fa
[05/06/24 19:08:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2728.fa
[05/06/24 19:08:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2729.fa
[05/06/24 19:08:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2730.fa
[05/06/24 19:08:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2731.fa
[05/06/24 19:08:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2732.fa
[05/06/24 19:08:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2733.fa
[05/06/24 19:08:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2734.fa
[05/06/24 19:08:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2735.fa
[05/06/24 19:08:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2736.fa
[05/06/24 19:08:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2737.fa
[05/06/24 19:08:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2738.fa
[05/06/24 19:08:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2739.fa
[05/06/24 19:08:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2740.fa
[05/06/24 19:08:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2741.fa
[05/06/24 19:08:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2742.fa
[05/06/24 19:08:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2743.fa
[05/06/24 19:08:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2744.fa
[05/06/24 19:08:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2746.fa
[05/06/24 19:08:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2745.fa
[05/06/24 19:08:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2747.fa
[05/06/24 19:08:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2748.fa
[05/06/24 19:08:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2749.fa
[05/06/24 19:08:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2750.fa
[05/06/24 19:08:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2751.fa
[05/06/24 19:08:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2752.fa
[05/06/24 19:08:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2753.fa
[05/06/24 19:08:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2754.fa
[05/06/24 19:08:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2755.fa
[05/06/24 19:08:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2756.fa
[05/06/24 19:08:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2757.fa
[05/06/24 19:08:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2758.fa
[05/06/24 19:08:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2759.fa
[05/06/24 19:08:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2760.fa
[05/06/24 19:08:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2761.fa
[05/06/24 19:08:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2762.fa
[05/06/24 19:08:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2763.fa
[05/06/24 19:08:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2765.fa
[05/06/24 19:08:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2764.fa
[05/06/24 19:08:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2766.fa
[05/06/24 19:08:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2767.fa
[05/06/24 19:08:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2768.fa
[05/06/24 19:08:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2769.fa
[05/06/24 19:08:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2770.fa
[05/06/24 19:08:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2772.fa
[05/06/24 19:08:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2773.fa
[05/06/24 19:08:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2771.fa
[05/06/24 19:08:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2774.fa
[05/06/24 19:08:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2775.fa
[05/06/24 19:08:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2776.fa
[05/06/24 19:08:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2777.fa
[05/06/24 19:08:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2778.fa
[05/06/24 19:08:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2779.fa
[05/06/24 19:08:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2780.fa
[05/06/24 19:08:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2781.fa
[05/06/24 19:08:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2782.fa
[05/06/24 19:08:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2783.fa
[05/06/24 19:08:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2784.fa
[05/06/24 19:08:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2785.fa
[05/06/24 19:08:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2786.fa
[05/06/24 19:08:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2787.fa
[05/06/24 19:08:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2788.fa
[05/06/24 19:08:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2789.fa
[05/06/24 19:08:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2790.fa
[05/06/24 19:08:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2791.fa
[05/06/24 19:08:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2792.fa
[05/06/24 19:08:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2793.fa
[05/06/24 19:08:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2794.fa
[05/06/24 19:08:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2795.fa
[05/06/24 19:08:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2796.fa
[05/06/24 19:08:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2797.fa
[05/06/24 19:08:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2798.fa
[05/06/24 19:08:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2799.fa
[05/06/24 19:08:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2800.fa
[05/06/24 19:08:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2801.fa
[05/06/24 19:08:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2802.fa
[05/06/24 19:08:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2803.fa
[05/06/24 19:08:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2804.fa
[05/06/24 19:08:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2805.fa
[05/06/24 19:08:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2806.fa
[05/06/24 19:08:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2807.fa
[05/06/24 19:08:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2808.fa
[05/06/24 19:08:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2809.fa
[05/06/24 19:08:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2810.fa
[05/06/24 19:08:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2811.fa
[05/06/24 19:08:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2812.fa
[05/06/24 19:08:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2813.fa
[05/06/24 19:08:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2814.fa
[05/06/24 19:08:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2815.fa
[05/06/24 19:08:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2816.fa
[05/06/24 19:08:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2817.fa
[05/06/24 19:08:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2818.fa
[05/06/24 19:08:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2819.fa
[05/06/24 19:08:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2820.fa
[05/06/24 19:08:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2821.fa
[05/06/24 19:08:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2822.fa
[05/06/24 19:08:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2823.fa
[05/06/24 19:08:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2824.fa
[05/06/24 19:08:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2825.fa
[05/06/24 19:08:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2826.fa
[05/06/24 19:08:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2827.fa
[05/06/24 19:08:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2828.fa
[05/06/24 19:08:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2829.fa
[05/06/24 19:08:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2830.fa
[05/06/24 19:08:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2831.fa
[05/06/24 19:08:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2832.fa
[05/06/24 19:08:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2833.fa
[05/06/24 19:08:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2834.fa
[05/06/24 19:08:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2835.fa
[05/06/24 19:08:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2836.fa
[05/06/24 19:08:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2837.fa
[05/06/24 19:08:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2838.fa
[05/06/24 19:08:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2839.fa
[05/06/24 19:08:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2840.fa
[05/06/24 19:08:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2841.fa
[05/06/24 19:08:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2842.fa
[05/06/24 19:08:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2843.fa
[05/06/24 19:08:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2844.fa
[05/06/24 19:08:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2845.fa
[05/06/24 19:09:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2846.fa
[05/06/24 19:09:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2847.fa
[05/06/24 19:09:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2848.fa
[05/06/24 19:09:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2849.fa
[05/06/24 19:09:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2850.fa
[05/06/24 19:09:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2851.fa
[05/06/24 19:09:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2852.fa
[05/06/24 19:09:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2853.fa
[05/06/24 19:09:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2854.fa
[05/06/24 19:09:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2855.fa
[05/06/24 19:09:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2856.fa
[05/06/24 19:09:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2857.fa
[05/06/24 19:09:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2858.fa
[05/06/24 19:09:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2859.fa
[05/06/24 19:09:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2860.fa
[05/06/24 19:09:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2861.fa
[05/06/24 19:09:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2862.fa
[05/06/24 19:09:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2863.fa
[05/06/24 19:09:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2864.fa
[05/06/24 19:09:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2865.fa
[05/06/24 19:09:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2866.fa
[05/06/24 19:09:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2867.fa
[05/06/24 19:09:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2868.fa
[05/06/24 19:09:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2869.fa
[05/06/24 19:09:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2870.fa
[05/06/24 19:09:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2871.fa
[05/06/24 19:09:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2872.fa
[05/06/24 19:09:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2873.fa
[05/06/24 19:09:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2874.fa
[05/06/24 19:09:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2875.fa
[05/06/24 19:09:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2876.fa
[05/06/24 19:09:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2877.fa
[05/06/24 19:09:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2878.fa
[05/06/24 19:09:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2879.fa
[05/06/24 19:09:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2880.fa
[05/06/24 19:09:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2881.fa
[05/06/24 19:09:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2882.fa
[05/06/24 19:09:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2883.fa
[05/06/24 19:09:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2884.fa
[05/06/24 19:09:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2885.fa
[05/06/24 19:09:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2886.fa
[05/06/24 19:09:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2887.fa
[05/06/24 19:09:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2888.fa
[05/06/24 19:09:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2889.fa
[05/06/24 19:09:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2890.fa
[05/06/24 19:09:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2891.fa
[05/06/24 19:09:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2892.fa
[05/06/24 19:09:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2893.fa
[05/06/24 19:09:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2894.fa
[05/06/24 19:09:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2895.fa
[05/06/24 19:09:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2896.fa
[05/06/24 19:09:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2897.fa
[05/06/24 19:09:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2898.fa
[05/06/24 19:09:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2899.fa
[05/06/24 19:09:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2900.fa
[05/06/24 19:09:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2901.fa
[05/06/24 19:09:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2902.fa
[05/06/24 19:09:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2903.fa
[05/06/24 19:09:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2904.fa
[05/06/24 19:09:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2905.fa
[05/06/24 19:09:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2906.fa
[05/06/24 19:09:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2907.fa
[05/06/24 19:09:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2908.fa
[05/06/24 19:09:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2909.fa
[05/06/24 19:09:05]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2910.fa
[05/06/24 19:09:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2911.fa
[05/06/24 19:09:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2912.fa
[05/06/24 19:09:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2913.fa
[05/06/24 19:09:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2914.fa
[05/06/24 19:09:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2915.fa
[05/06/24 19:09:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2916.fa
[05/06/24 19:09:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2917.fa
[05/06/24 19:09:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2918.fa
[05/06/24 19:09:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2919.fa
[05/06/24 19:09:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2920.fa
[05/06/24 19:09:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2921.fa
[05/06/24 19:09:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2922.fa
[05/06/24 19:09:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2923.fa
[05/06/24 19:09:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2924.fa
[05/06/24 19:09:06]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2925.fa
[05/06/24 19:09:07]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2926.fa
[05/06/24 19:09:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2927.fa
[05/06/24 19:09:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2928.fa
[05/06/24 19:09:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2929.fa
[05/06/24 19:09:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2930.fa
[05/06/24 19:09:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2931.fa
[05/06/24 19:09:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2932.fa
[05/06/24 19:09:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2933.fa
[05/06/24 19:09:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2934.fa
[05/06/24 19:09:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2935.fa
[05/06/24 19:09:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2936.fa
[05/06/24 19:09:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2937.fa
[05/06/24 19:09:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2938.fa
[05/06/24 19:09:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2939.fa
[05/06/24 19:09:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2940.fa
[05/06/24 19:09:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2941.fa
[05/06/24 19:09:08]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2942.fa
[05/06/24 19:09:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2943.fa
[05/06/24 19:09:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2944.fa
[05/06/24 19:09:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2945.fa
[05/06/24 19:09:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2946.fa
[05/06/24 19:09:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2947.fa
[05/06/24 19:09:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2948.fa
[05/06/24 19:09:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2949.fa
[05/06/24 19:09:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2950.fa
[05/06/24 19:09:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2951.fa
[05/06/24 19:09:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2952.fa
[05/06/24 19:09:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2953.fa
[05/06/24 19:09:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2954.fa
[05/06/24 19:09:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2955.fa
[05/06/24 19:09:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2956.fa
[05/06/24 19:09:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2957.fa
[05/06/24 19:09:09]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2958.fa
[05/06/24 19:09:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2959.fa
[05/06/24 19:09:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2960.fa
[05/06/24 19:09:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2961.fa
[05/06/24 19:09:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2962.fa
[05/06/24 19:09:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2963.fa
[05/06/24 19:09:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2964.fa
[05/06/24 19:09:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2965.fa
[05/06/24 19:09:10]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2966.fa
[05/06/24 19:09:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2967.fa
[05/06/24 19:09:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2968.fa
[05/06/24 19:09:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2969.fa
[05/06/24 19:09:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2970.fa
[05/06/24 19:09:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2971.fa
[05/06/24 19:09:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2972.fa
[05/06/24 19:09:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2973.fa
[05/06/24 19:09:11]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2974.fa
[05/06/24 19:09:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2975.fa
[05/06/24 19:09:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2976.fa
[05/06/24 19:09:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2977.fa
[05/06/24 19:09:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2978.fa
[05/06/24 19:09:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2979.fa
[05/06/24 19:09:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2980.fa
[05/06/24 19:09:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2981.fa
[05/06/24 19:09:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2982.fa
[05/06/24 19:09:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2983.fa
[05/06/24 19:09:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2984.fa
[05/06/24 19:09:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2985.fa
[05/06/24 19:09:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2986.fa
[05/06/24 19:09:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2987.fa
[05/06/24 19:09:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2988.fa
[05/06/24 19:09:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2989.fa
[05/06/24 19:09:12]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2990.fa
[05/06/24 19:09:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2991.fa
[05/06/24 19:09:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2992.fa
[05/06/24 19:09:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2993.fa
[05/06/24 19:09:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2994.fa
[05/06/24 19:09:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2995.fa
[05/06/24 19:09:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2996.fa
[05/06/24 19:09:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2997.fa
[05/06/24 19:09:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2998.fa
[05/06/24 19:09:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_2999.fa
[05/06/24 19:09:13]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3000.fa
[05/06/24 19:09:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3001.fa
[05/06/24 19:09:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3002.fa
[05/06/24 19:09:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3003.fa
[05/06/24 19:09:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3004.fa
[05/06/24 19:09:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3005.fa
[05/06/24 19:09:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3006.fa
[05/06/24 19:09:14]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3007.fa
[05/06/24 19:09:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3008.fa
[05/06/24 19:09:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3009.fa
[05/06/24 19:09:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3010.fa
[05/06/24 19:09:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3011.fa
[05/06/24 19:09:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3012.fa
[05/06/24 19:09:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3013.fa
[05/06/24 19:09:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3014.fa
[05/06/24 19:09:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3015.fa
[05/06/24 19:09:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3016.fa
[05/06/24 19:09:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3017.fa
[05/06/24 19:09:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3018.fa
[05/06/24 19:09:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3019.fa
[05/06/24 19:09:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3020.fa
[05/06/24 19:09:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3021.fa
[05/06/24 19:09:15]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3022.fa
[05/06/24 19:09:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3023.fa
[05/06/24 19:09:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3024.fa
[05/06/24 19:09:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3025.fa
[05/06/24 19:09:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3026.fa
[05/06/24 19:09:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3027.fa
[05/06/24 19:09:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3028.fa
[05/06/24 19:09:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3029.fa
[05/06/24 19:09:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3030.fa
[05/06/24 19:09:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3031.fa
[05/06/24 19:09:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3032.fa
[05/06/24 19:09:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3033.fa
[05/06/24 19:09:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3034.fa
[05/06/24 19:09:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3035.fa
[05/06/24 19:09:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3036.fa
[05/06/24 19:09:16]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3037.fa
[05/06/24 19:09:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3038.fa
[05/06/24 19:09:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3039.fa
[05/06/24 19:09:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3040.fa
[05/06/24 19:09:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3041.fa
[05/06/24 19:09:17]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3042.fa
[05/06/24 19:09:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3043.fa
[05/06/24 19:09:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3044.fa
[05/06/24 19:09:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3045.fa
[05/06/24 19:09:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3046.fa
[05/06/24 19:09:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3047.fa
[05/06/24 19:09:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3048.fa
[05/06/24 19:09:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3049.fa
[05/06/24 19:09:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3050.fa
[05/06/24 19:09:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3051.fa
[05/06/24 19:09:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3052.fa
[05/06/24 19:09:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3053.fa
[05/06/24 19:09:18]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3054.fa
[05/06/24 19:09:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3055.fa
[05/06/24 19:09:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3056.fa
[05/06/24 19:09:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3057.fa
[05/06/24 19:09:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3058.fa
[05/06/24 19:09:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3060.fa
[05/06/24 19:09:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3059.fa
[05/06/24 19:09:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3061.fa
[05/06/24 19:09:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3062.fa
[05/06/24 19:09:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3063.fa
[05/06/24 19:09:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3064.fa
[05/06/24 19:09:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3065.fa
[05/06/24 19:09:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3066.fa
[05/06/24 19:09:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3067.fa
[05/06/24 19:09:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3068.fa
[05/06/24 19:09:19]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3069.fa
[05/06/24 19:09:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3070.fa
[05/06/24 19:09:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3071.fa
[05/06/24 19:09:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3072.fa
[05/06/24 19:09:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3073.fa
[05/06/24 19:09:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3074.fa
[05/06/24 19:09:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3075.fa
[05/06/24 19:09:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3076.fa
[05/06/24 19:09:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3077.fa
[05/06/24 19:09:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3078.fa
[05/06/24 19:09:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3079.fa
[05/06/24 19:09:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3080.fa
[05/06/24 19:09:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3081.fa
[05/06/24 19:09:20]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3082.fa
[05/06/24 19:09:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3083.fa
[05/06/24 19:09:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3084.fa
[05/06/24 19:09:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3085.fa
[05/06/24 19:09:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3086.fa
[05/06/24 19:09:21]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3087.fa
[05/06/24 19:09:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3088.fa
[05/06/24 19:09:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3089.fa
[05/06/24 19:09:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3090.fa
[05/06/24 19:09:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3091.fa
[05/06/24 19:09:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3092.fa
[05/06/24 19:09:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3093.fa
[05/06/24 19:09:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3094.fa
[05/06/24 19:09:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3095.fa
[05/06/24 19:09:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3096.fa
[05/06/24 19:09:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3097.fa
[05/06/24 19:09:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3098.fa
[05/06/24 19:09:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3099.fa
[05/06/24 19:09:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3100.fa
[05/06/24 19:09:22]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3101.fa
[05/06/24 19:09:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3102.fa
[05/06/24 19:09:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3103.fa
[05/06/24 19:09:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3104.fa
[05/06/24 19:09:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3105.fa
[05/06/24 19:09:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3106.fa
[05/06/24 19:09:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3107.fa
[05/06/24 19:09:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3108.fa
[05/06/24 19:09:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3109.fa
[05/06/24 19:09:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3110.fa
[05/06/24 19:09:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3111.fa
[05/06/24 19:09:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3112.fa
[05/06/24 19:09:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3113.fa
[05/06/24 19:09:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3114.fa
[05/06/24 19:09:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3115.fa
[05/06/24 19:09:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3116.fa
[05/06/24 19:09:23]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3117.fa
[05/06/24 19:09:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3118.fa
[05/06/24 19:09:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3119.fa
[05/06/24 19:09:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3120.fa
[05/06/24 19:09:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3121.fa
[05/06/24 19:09:24]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3122.fa
[05/06/24 19:09:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3123.fa
[05/06/24 19:09:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3124.fa
[05/06/24 19:09:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3125.fa
[05/06/24 19:09:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3126.fa
[05/06/24 19:09:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3127.fa
[05/06/24 19:09:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3128.fa
[05/06/24 19:09:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3129.fa
[05/06/24 19:09:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3130.fa
[05/06/24 19:09:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3131.fa
[05/06/24 19:09:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3132.fa
[05/06/24 19:09:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3133.fa
[05/06/24 19:09:25]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3134.fa
[05/06/24 19:09:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3135.fa
[05/06/24 19:09:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3136.fa
[05/06/24 19:09:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3137.fa
[05/06/24 19:09:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3138.fa
[05/06/24 19:09:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3139.fa
[05/06/24 19:09:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3140.fa
[05/06/24 19:09:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3141.fa
[05/06/24 19:09:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3142.fa
[05/06/24 19:09:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3143.fa
[05/06/24 19:09:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3144.fa
[05/06/24 19:09:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3145.fa
[05/06/24 19:09:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3146.fa
[05/06/24 19:09:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3147.fa
[05/06/24 19:09:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3148.fa
[05/06/24 19:09:26]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3149.fa
[05/06/24 19:09:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3150.fa
[05/06/24 19:09:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3151.fa
[05/06/24 19:09:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3152.fa
[05/06/24 19:09:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3153.fa
[05/06/24 19:09:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3154.fa
[05/06/24 19:09:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3155.fa
[05/06/24 19:09:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3156.fa
[05/06/24 19:09:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3157.fa
[05/06/24 19:09:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3158.fa
[05/06/24 19:09:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3159.fa
[05/06/24 19:09:27]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3160.fa
[05/06/24 19:09:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3161.fa
[05/06/24 19:09:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3162.fa
[05/06/24 19:09:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3163.fa
[05/06/24 19:09:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3164.fa
[05/06/24 19:09:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3165.fa
[05/06/24 19:09:28]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3166.fa
[05/06/24 19:09:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3167.fa
[05/06/24 19:09:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3168.fa
[05/06/24 19:09:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3169.fa
[05/06/24 19:09:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3170.fa
[05/06/24 19:09:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3171.fa
[05/06/24 19:09:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3172.fa
[05/06/24 19:09:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3173.fa
[05/06/24 19:09:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3174.fa
[05/06/24 19:09:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3175.fa
[05/06/24 19:09:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3176.fa
[05/06/24 19:09:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3177.fa
[05/06/24 19:09:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3178.fa
[05/06/24 19:09:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3179.fa
[05/06/24 19:09:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3180.fa
[05/06/24 19:09:29]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3181.fa
[05/06/24 19:09:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3182.fa
[05/06/24 19:09:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3183.fa
[05/06/24 19:09:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3184.fa
[05/06/24 19:09:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3185.fa
[05/06/24 19:09:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3186.fa
[05/06/24 19:09:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3187.fa
[05/06/24 19:09:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3188.fa
[05/06/24 19:09:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3189.fa
[05/06/24 19:09:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3190.fa
[05/06/24 19:09:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3191.fa
[05/06/24 19:09:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3192.fa
[05/06/24 19:09:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3193.fa
[05/06/24 19:09:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3194.fa
[05/06/24 19:09:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3195.fa
[05/06/24 19:09:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3196.fa
[05/06/24 19:09:30]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3197.fa
[05/06/24 19:09:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3198.fa
[05/06/24 19:09:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3199.fa
[05/06/24 19:09:31]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3200.fa
[05/06/24 19:09:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3201.fa
[05/06/24 19:09:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3202.fa
[05/06/24 19:09:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3203.fa
[05/06/24 19:09:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3204.fa
[05/06/24 19:09:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3205.fa
[05/06/24 19:09:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3206.fa
[05/06/24 19:09:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3207.fa
[05/06/24 19:09:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3208.fa
[05/06/24 19:09:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3209.fa
[05/06/24 19:09:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3210.fa
[05/06/24 19:09:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3211.fa
[05/06/24 19:09:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3212.fa
[05/06/24 19:09:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3213.fa
[05/06/24 19:09:32]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3214.fa
[05/06/24 19:09:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3215.fa
[05/06/24 19:09:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3216.fa
[05/06/24 19:09:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3217.fa
[05/06/24 19:09:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3218.fa
[05/06/24 19:09:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3219.fa
[05/06/24 19:09:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3220.fa
[05/06/24 19:09:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3221.fa
[05/06/24 19:09:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3222.fa
[05/06/24 19:09:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3223.fa
[05/06/24 19:09:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3224.fa
[05/06/24 19:09:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3225.fa
[05/06/24 19:09:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3226.fa
[05/06/24 19:09:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3227.fa
[05/06/24 19:09:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3228.fa
[05/06/24 19:09:33]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3229.fa
[05/06/24 19:09:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3230.fa
[05/06/24 19:09:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3231.fa
[05/06/24 19:09:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3232.fa
[05/06/24 19:09:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3233.fa
[05/06/24 19:09:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3234.fa
[05/06/24 19:09:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3235.fa
[05/06/24 19:09:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3236.fa
[05/06/24 19:09:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3237.fa
[05/06/24 19:09:34]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3238.fa
[05/06/24 19:09:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3239.fa
[05/06/24 19:09:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3240.fa
[05/06/24 19:09:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3241.fa
[05/06/24 19:09:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3242.fa
[05/06/24 19:09:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3243.fa
[05/06/24 19:09:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3244.fa
[05/06/24 19:09:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3245.fa
[05/06/24 19:09:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3246.fa
[05/06/24 19:09:35]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3247.fa
[05/06/24 19:09:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3248.fa
[05/06/24 19:09:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3249.fa
[05/06/24 19:09:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3250.fa
[05/06/24 19:09:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3251.fa
[05/06/24 19:09:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3252.fa
[05/06/24 19:09:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3253.fa
[05/06/24 19:09:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3254.fa
[05/06/24 19:09:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3255.fa
[05/06/24 19:09:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3256.fa
[05/06/24 19:09:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3257.fa
[05/06/24 19:09:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3258.fa
[05/06/24 19:09:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3259.fa
[05/06/24 19:09:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3260.fa
[05/06/24 19:09:36]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3261.fa
[05/06/24 19:09:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3262.fa
[05/06/24 19:09:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3263.fa
[05/06/24 19:09:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3264.fa
[05/06/24 19:09:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3265.fa
[05/06/24 19:09:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3266.fa
[05/06/24 19:09:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3267.fa
[05/06/24 19:09:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3268.fa
[05/06/24 19:09:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3269.fa
[05/06/24 19:09:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3270.fa
[05/06/24 19:09:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3271.fa
[05/06/24 19:09:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3272.fa
[05/06/24 19:09:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3273.fa
[05/06/24 19:09:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3274.fa
[05/06/24 19:09:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3275.fa
[05/06/24 19:09:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3276.fa
[05/06/24 19:09:37]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3277.fa
[05/06/24 19:09:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3278.fa
[05/06/24 19:09:38]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3279.fa
[05/06/24 19:09:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3280.fa
[05/06/24 19:09:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3281.fa
[05/06/24 19:09:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3282.fa
[05/06/24 19:09:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3283.fa
[05/06/24 19:09:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3284.fa
[05/06/24 19:09:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3285.fa
[05/06/24 19:09:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3286.fa
[05/06/24 19:09:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3287.fa
[05/06/24 19:09:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3288.fa
[05/06/24 19:09:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3289.fa
[05/06/24 19:09:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3290.fa
[05/06/24 19:09:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3291.fa
[05/06/24 19:09:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3292.fa
[05/06/24 19:09:39]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3293.fa
[05/06/24 19:09:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3294.fa
[05/06/24 19:09:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3295.fa
[05/06/24 19:09:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3296.fa
[05/06/24 19:09:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3297.fa
[05/06/24 19:09:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3298.fa
[05/06/24 19:09:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3299.fa
[05/06/24 19:09:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3300.fa
[05/06/24 19:09:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3301.fa
[05/06/24 19:09:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3302.fa
[05/06/24 19:09:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3303.fa
[05/06/24 19:09:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3304.fa
[05/06/24 19:09:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3305.fa
[05/06/24 19:09:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3306.fa
[05/06/24 19:09:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3307.fa
[05/06/24 19:09:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3308.fa
[05/06/24 19:09:40]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3309.fa
[05/06/24 19:09:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3310.fa
[05/06/24 19:09:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3311.fa
[05/06/24 19:09:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3312.fa
[05/06/24 19:09:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3313.fa
[05/06/24 19:09:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3314.fa
[05/06/24 19:09:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3315.fa
[05/06/24 19:09:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3316.fa
[05/06/24 19:09:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3317.fa
[05/06/24 19:09:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3318.fa
[05/06/24 19:09:41]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3319.fa
[05/06/24 19:09:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3320.fa
[05/06/24 19:09:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3321.fa
[05/06/24 19:09:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3322.fa
[05/06/24 19:09:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3323.fa
[05/06/24 19:09:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3324.fa
[05/06/24 19:09:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3325.fa
[05/06/24 19:09:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3326.fa
[05/06/24 19:09:42]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3327.fa
[05/06/24 19:09:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3328.fa
[05/06/24 19:09:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3329.fa
[05/06/24 19:09:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3330.fa
[05/06/24 19:09:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3331.fa
[05/06/24 19:09:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3332.fa
[05/06/24 19:09:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3333.fa
[05/06/24 19:09:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3334.fa
[05/06/24 19:09:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3335.fa
[05/06/24 19:09:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3336.fa
[05/06/24 19:09:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3337.fa
[05/06/24 19:09:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3338.fa
[05/06/24 19:09:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3339.fa
[05/06/24 19:09:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3340.fa
[05/06/24 19:09:43]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3341.fa
[05/06/24 19:09:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3342.fa
[05/06/24 19:09:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3343.fa
[05/06/24 19:09:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3344.fa
[05/06/24 19:09:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3345.fa
[05/06/24 19:09:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3346.fa
[05/06/24 19:09:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3347.fa
[05/06/24 19:09:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3348.fa
[05/06/24 19:09:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3349.fa
[05/06/24 19:09:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3350.fa
[05/06/24 19:09:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3351.fa
[05/06/24 19:09:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3352.fa
[05/06/24 19:09:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3353.fa
[05/06/24 19:09:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3354.fa
[05/06/24 19:09:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3355.fa
[05/06/24 19:09:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3356.fa
[05/06/24 19:09:44]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3357.fa
[05/06/24 19:09:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3358.fa
[05/06/24 19:09:45]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3359.fa
[05/06/24 19:09:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3360.fa
[05/06/24 19:09:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3361.fa
[05/06/24 19:09:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3362.fa
[05/06/24 19:09:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3363.fa
[05/06/24 19:09:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3364.fa
[05/06/24 19:09:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3365.fa
[05/06/24 19:09:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3366.fa
[05/06/24 19:09:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3367.fa
[05/06/24 19:09:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3368.fa
[05/06/24 19:09:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3369.fa
[05/06/24 19:09:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3370.fa
[05/06/24 19:09:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3371.fa
[05/06/24 19:09:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3372.fa
[05/06/24 19:09:46]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3373.fa
[05/06/24 19:09:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3374.fa
[05/06/24 19:09:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3375.fa
[05/06/24 19:09:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3376.fa
[05/06/24 19:09:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3377.fa
[05/06/24 19:09:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3378.fa
[05/06/24 19:09:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3379.fa
[05/06/24 19:09:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3380.fa
[05/06/24 19:09:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3381.fa
[05/06/24 19:09:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3382.fa
[05/06/24 19:09:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3383.fa
[05/06/24 19:09:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3384.fa
[05/06/24 19:09:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3385.fa
[05/06/24 19:09:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3386.fa
[05/06/24 19:09:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3387.fa
[05/06/24 19:09:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3388.fa
[05/06/24 19:09:47]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3389.fa
[05/06/24 19:09:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3390.fa
[05/06/24 19:09:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3391.fa
[05/06/24 19:09:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3392.fa
[05/06/24 19:09:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3393.fa
[05/06/24 19:09:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3394.fa
[05/06/24 19:09:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3395.fa
[05/06/24 19:09:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3396.fa
[05/06/24 19:09:48]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3397.fa
[05/06/24 19:09:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3398.fa
[05/06/24 19:09:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3399.fa
[05/06/24 19:09:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3400.fa
[05/06/24 19:09:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3401.fa
[05/06/24 19:09:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3402.fa
[05/06/24 19:09:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3403.fa
[05/06/24 19:09:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3404.fa
[05/06/24 19:09:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3405.fa
[05/06/24 19:09:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3406.fa
[05/06/24 19:09:49]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3407.fa
[05/06/24 19:09:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3408.fa
[05/06/24 19:09:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3409.fa
[05/06/24 19:09:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3410.fa
[05/06/24 19:09:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3411.fa
[05/06/24 19:09:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3412.fa
[05/06/24 19:09:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3413.fa
[05/06/24 19:09:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3414.fa
[05/06/24 19:09:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3415.fa
[05/06/24 19:09:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3416.fa
[05/06/24 19:09:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3417.fa
[05/06/24 19:09:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3418.fa
[05/06/24 19:09:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3419.fa
[05/06/24 19:09:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3420.fa
[05/06/24 19:09:50]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3421.fa
[05/06/24 19:09:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3422.fa
[05/06/24 19:09:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3423.fa
[05/06/24 19:09:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3424.fa
[05/06/24 19:09:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3425.fa
[05/06/24 19:09:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3426.fa
[05/06/24 19:09:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3427.fa
[05/06/24 19:09:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3428.fa
[05/06/24 19:09:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3429.fa
[05/06/24 19:09:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3430.fa
[05/06/24 19:09:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3431.fa
[05/06/24 19:09:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3432.fa
[05/06/24 19:09:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3433.fa
[05/06/24 19:09:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3434.fa
[05/06/24 19:09:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3435.fa
[05/06/24 19:09:51]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3436.fa
[05/06/24 19:09:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3437.fa
[05/06/24 19:09:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3438.fa
[05/06/24 19:09:52]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3439.fa
[05/06/24 19:09:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3440.fa
[05/06/24 19:09:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3441.fa
[05/06/24 19:09:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3442.fa
[05/06/24 19:09:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3443.fa
[05/06/24 19:09:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3444.fa
[05/06/24 19:09:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3445.fa
[05/06/24 19:09:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3446.fa
[05/06/24 19:09:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3447.fa
[05/06/24 19:09:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3448.fa
[05/06/24 19:09:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3449.fa
[05/06/24 19:09:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3450.fa
[05/06/24 19:09:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3451.fa
[05/06/24 19:09:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3452.fa
[05/06/24 19:09:53]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3453.fa
[05/06/24 19:09:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3454.fa
[05/06/24 19:09:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3455.fa
[05/06/24 19:09:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3456.fa
[05/06/24 19:09:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3457.fa
[05/06/24 19:09:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3458.fa
[05/06/24 19:09:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3459.fa
[05/06/24 19:09:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3460.fa
[05/06/24 19:09:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3461.fa
[05/06/24 19:09:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3462.fa
[05/06/24 19:09:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3463.fa
[05/06/24 19:09:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3464.fa
[05/06/24 19:09:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3465.fa
[05/06/24 19:09:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3466.fa
[05/06/24 19:09:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3467.fa
[05/06/24 19:09:54]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3468.fa
[05/06/24 19:09:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3469.fa
[05/06/24 19:09:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3470.fa
[05/06/24 19:09:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3471.fa
[05/06/24 19:09:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3472.fa
[05/06/24 19:09:55]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3473.fa
[05/06/24 19:09:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3474.fa
[05/06/24 19:09:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3475.fa
[05/06/24 19:09:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3476.fa
[05/06/24 19:09:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3477.fa
[05/06/24 19:09:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3478.fa
[05/06/24 19:09:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3479.fa
[05/06/24 19:09:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3480.fa
[05/06/24 19:09:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3481.fa
[05/06/24 19:09:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3482.fa
[05/06/24 19:09:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3483.fa
[05/06/24 19:09:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3484.fa
[05/06/24 19:09:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3485.fa
[05/06/24 19:09:56]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3486.fa
[05/06/24 19:09:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3487.fa
[05/06/24 19:09:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3488.fa
[05/06/24 19:09:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3489.fa
[05/06/24 19:09:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3490.fa
[05/06/24 19:09:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3491.fa
[05/06/24 19:09:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3492.fa
[05/06/24 19:09:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3493.fa
[05/06/24 19:09:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3494.fa
[05/06/24 19:09:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3495.fa
[05/06/24 19:09:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3496.fa
[05/06/24 19:09:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3497.fa
[05/06/24 19:09:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3498.fa
[05/06/24 19:09:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3499.fa
[05/06/24 19:09:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3500.fa
[05/06/24 19:09:57]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3501.fa
[05/06/24 19:09:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3502.fa
[05/06/24 19:09:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3503.fa
[05/06/24 19:09:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3504.fa
[05/06/24 19:09:58]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3505.fa
[05/06/24 19:09:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3506.fa
[05/06/24 19:09:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3507.fa
[05/06/24 19:09:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3508.fa
[05/06/24 19:09:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3509.fa
[05/06/24 19:09:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3510.fa
[05/06/24 19:09:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3511.fa
[05/06/24 19:09:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3512.fa
[05/06/24 19:09:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3513.fa
[05/06/24 19:09:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3514.fa
[05/06/24 19:09:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3515.fa
[05/06/24 19:09:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3516.fa
[05/06/24 19:09:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3517.fa
[05/06/24 19:09:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3518.fa
[05/06/24 19:09:59]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3519.fa
[05/06/24 19:10:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3520.fa
[05/06/24 19:10:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3521.fa
[05/06/24 19:10:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3522.fa
[05/06/24 19:10:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3523.fa
[05/06/24 19:10:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3524.fa
[05/06/24 19:10:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3525.fa
[05/06/24 19:10:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3526.fa
[05/06/24 19:10:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3527.fa
[05/06/24 19:10:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3528.fa
[05/06/24 19:10:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3529.fa
[05/06/24 19:10:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3530.fa
[05/06/24 19:10:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3531.fa
[05/06/24 19:10:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3532.fa
[05/06/24 19:10:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3533.fa
[05/06/24 19:10:00]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3534.fa
[05/06/24 19:10:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3535.fa
[05/06/24 19:10:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3536.fa
[05/06/24 19:10:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3537.fa
[05/06/24 19:10:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3538.fa
[05/06/24 19:10:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3539.fa
[05/06/24 19:10:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3540.fa
[05/06/24 19:10:01]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3541.fa
[05/06/24 19:10:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3542.fa
[05/06/24 19:10:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3543.fa
[05/06/24 19:10:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3544.fa
[05/06/24 19:10:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3545.fa
[05/06/24 19:10:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3546.fa
[05/06/24 19:10:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3547.fa
[05/06/24 19:10:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3548.fa
[05/06/24 19:10:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3549.fa
[05/06/24 19:10:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3550.fa
[05/06/24 19:10:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3551.fa
[05/06/24 19:10:02]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3552.fa
[05/06/24 19:10:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3553.fa
[05/06/24 19:10:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3554.fa
[05/06/24 19:10:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3555.fa
[05/06/24 19:10:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3556.fa
[05/06/24 19:10:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3557.fa
[05/06/24 19:10:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3558.fa
[05/06/24 19:10:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3559.fa
[05/06/24 19:10:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3560.fa
[05/06/24 19:10:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3561.fa
[05/06/24 19:10:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3562.fa
[05/06/24 19:10:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3563.fa
[05/06/24 19:10:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3564.fa
[05/06/24 19:10:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3565.fa
[05/06/24 19:10:03]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3566.fa
[05/06/24 19:10:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3567.fa
[05/06/24 19:10:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3568.fa
[05/06/24 19:10:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3569.fa
[05/06/24 19:10:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3570.fa
[05/06/24 19:10:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3571.fa
[05/06/24 19:10:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3572.fa
[05/06/24 19:10:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3573.fa
[05/06/24 19:10:04]: augustus --species=species_name --extrinsicCfgFile=/venv/lib/python3.8/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/scaffold_3574.fa
[05/06/24 19:10:06]: Augustus prediction is finished, now concatenating results
[05/06/24 19:10:06]: Augustus finished, now joining results
[05/06/24 19:10:06]: /usr/share/augustus/scripts/join_aug_pred.pl < augustus_tmp_6146d740-f158-4a24-86e3-648b9b2e8c73/augustus_all.gff3 > fun/predict_misc/augustus.gff3
[05/06/24 19:10:11]: 41,194 predictions from Augustus