## templated variables to be replaced exist as <__var_name__>

# database settings
DATABASE=/suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/training/pasa/Plecoglossus_altivelis_pasa

#######################################################
# Parameters to specify to specific scripts in pipeline
# create a key = "script_name" + ":" + "parameter" 
# assign a value as done above.

#script validate_alignments_in_db.dbi

validate_alignments_in_db.dbi:--NUM_BP_PERFECT_SPLICE_BOUNDARY=3
validate_alignments_in_db.dbi:--MIN_PERCENT_ALIGNED=90
validate_alignments_in_db.dbi:--MIN_AVG_PER_ID=95

#script subcluster_builder.dbi
subcluster_builder.dbi:-m=50