#contig_id	alt_splicing_type	lend	rend	orient	supporting_pasa_asmbls	gene_annotations	supporing_transcripts	count_supporting_transcripts	alternative_overlapping_transcripts	count_alternative_transcripts
scaffold_10	starts_in_intron	7831086	7831086	-	asmbl_3481	none	blat.proc3829893.chain_1010	1	STRG.12565.1,blat.proc3829893.chain_1011	2
scaffold_27	retained_exon	973582	975035	+	asmbl_35931,asmbl_35936	none	STRG.28576.1,Trinity_GG_15816_c0_g1_i5,Trinity_GG_15816_c0_g1_i6,blat.proc3829885.chain_1616,blat.proc3829885.chain_1617	5	Trinity_GG_15816_c0_g1_i2,blat.proc3829885.chain_1619	2
scaffold_5	spliced_intron	4754616	4754915	+	asmbl_43960	none	STRG.5927.1,blat.proc3829873.chain_2071	2	blat.proc3829873.chain_2070	1
scaffold_22	alt_acceptor	728110	728111	+	asmbl_29181	none	STRG.24711.2	1	STRG.24711.1,STRG.24711.3,Trinity_GG_13664_c0_g1_i1,blat.proc3829883.chain_1767	4
scaffold_21	alternate_exon	3732922	3733404	-	asmbl_27554	none	STRG.23948.1,blat.proc3829899.chain_1021	2	STRG.23948.2,blat.proc3829899.chain_1022	2
scaffold_1	alternate_exon	14421376	14423286	-	asmbl_922,asmbl_923	none	STRG.1038.1,STRG.1038.2,Trinity_GG_17565_c0_g1_i4	3	STRG.1038.3	1
scaffold_7	spliced_intron	13221544	13221715	+	asmbl_51210,asmbl_51212	none	STRG.9423.2,Trinity_GG_5240_c0_g1_i2,blat.proc3829875.chain_1892	3	STRG.9423.1,Trinity_GG_5240_c0_g1_i1,blat.proc3829875.chain_1891	3
scaffold_2727	retained_intron	835	963	-	asmbl_37191	none	STRG.30758.2	1	STRG.30758.1	1
scaffold_6	spliced_intron	14175055	14175078	-	asmbl_48929	none	STRG.8173.2	1	STRG.8173.1,blat.proc3829891.chain_508,blat.proc3829891.chain_509,blat.proc3829891.chain_510,blat.proc3829891.chain_511	5
scaffold_13	retained_intron	3054628	3054794	-	asmbl_9470,asmbl_9471	none	STRG.15597.1,STRG.15597.3,Trinity_GG_25746_c0_g1_i1,blat.proc3829895.chain_334,blat.proc3829895.chain_335	5	STRG.15597.2	1
scaffold_14	starts_in_intron	15244190	15244190	+	asmbl_12565	none	Trinity_GG_9756_c0_g1_i1,blat.proc3829879.chain_2419	2	STRG.17736.1,blat.proc3829879.chain_2420	2
scaffold_5	retained_exon	11630482	11630545	-	asmbl_45802	none	blat.proc3829889.chain_2529	1	blat.proc3829889.chain_2524	1
scaffold_13	retained_intron	7216462	7216557	+	asmbl_11006,asmbl_11010	none	STRG.16002.2,blat.proc3829879.chain_698	2	STRG.16002.1,blat.proc3829879.chain_693,blat.proc3829879.chain_695,blat.proc3829879.chain_696,blat.proc3829879.chain_699,blat.proc3829879.chain_700,blat.proc3829879.chain_701	7
scaffold_12	starts_in_intron	15437848	15437848	-	asmbl_8227	none	blat.proc3829895.chain_76	1	STRG.15336.1,STRG.15336.2,blat.proc3829895.chain_75,blat.proc3829895.chain_77	4
scaffold_17	ends_in_intron	1055357	1055357	-	asmbl_18714	none	STRG.19935.3,blat.proc3829897.chain_822	2	STRG.19935.1,STRG.19935.2,blat.proc3829897.chain_820,blat.proc3829897.chain_821	4
scaffold_4	retained_exon	3341413	3341484	+	asmbl_42505	none	STRG.4264.1,Trinity_GG_2387_c0_g1_i2,blat.proc3829873.chain_642	3	STRG.4264.3	1
scaffold_22	spliced_intron	10286469	10286546	-	asmbl_30368	none	STRG.25359.1	1	Trinity_GG_31184_c0_g1_i2,blat.proc3829899.chain_2426	2
scaffold_1	retained_intron	11177521	11177606	+	asmbl_2071	none	blat.proc3829871.chain_817	1	STRG.743.1,STRG.743.2,STRG.743.3,STRG.743.4,STRG.743.5,blat.proc3829871.chain_815,blat.proc3829871.chain_819,blat.proc3829871.chain_820,blat.proc3829871.chain_821,blat.proc3829871.chain_822,blat.proc3829871.chain_824,blat.proc3829871.chain_825	12
scaffold_11	spliced_intron	11997492	11997906	-	asmbl_7036,asmbl_7037,asmbl_7038,asmbl_7039	none	STRG.14111.1,STRG.14111.2,STRG.14111.3,Trinity_GG_24898_c0_g1_i1,Trinity_GG_24898_c0_g1_i3,Trinity_GG_24898_c0_g1_i4,Trinity_GG_24898_c0_g1_i5,blat.proc3829893.chain_2513,blat.proc3829893.chain_2515,blat.proc3829893.chain_2516	10	STRG.14111.4,Trinity_GG_24898_c1_g1_i1,blat.proc3829893.chain_2517	3
scaffold_14	spliced_intron	3388662	3389749	+	asmbl_11916	none	STRG.16914.1,blat.proc3829879.chain_1558	2	Trinity_GG_9264_c0_g1_i2,blat.proc3829879.chain_1557	2
scaffold_22	alt_acceptor	10985971	10985972	-	asmbl_30405	none	STRG.25414.2,blat.proc3829899.chain_2493	2	STRG.25414.4,blat.proc3829899.chain_2492	2
scaffold_1	alt_acceptor	855129	855130	+	asmbl_1420	none	STRG.42.6,Trinity_GG_38_c0_g1_i9,blat.proc3829871.chain_70	3	STRG.42.1,STRG.42.2,STRG.42.3	3
scaffold_8	retained_intron	6159495	6159934	-	asmbl_52854,asmbl_52857	none	STRG.10012.3,blat.proc3829891.chain_2213,blat.proc3829891.chain_2216	3	STRG.10012.1,Trinity_GG_22628_c0_g1_i1,blat.proc3829891.chain_2214,blat.proc3829891.chain_2218	4
scaffold_8	retained_intron	18089675	18090313	+	asmbl_52519	none	STRG.10702.3,blat.proc3829875.chain_3181	2	STRG.10702.1,blat.proc3829875.chain_3180	2
scaffold_21	starts_in_intron	439911	439911	+	asmbl_28280	none	Trinity_GG_13142_c0_g1_i1,blat.proc3829883.chain_878	2	STRG.23720.1,blat.proc3829883.chain_877	2
scaffold_5	retained_intron	10973470	10973567	+	asmbl_44388	none	blat.proc3829873.chain_2458	1	STRG.6369.1,blat.proc3829873.chain_2459	2
scaffold_11	skipped_exon	1143485	1145193	+	asmbl_5281	none	STRG.13296.2,blat.proc3829877.chain_1728	2	STRG.13296.1,blat.proc3829877.chain_1729	2
scaffold_2	retained_intron	18771893	18771973	+	asmbl_25282	none	STRG.2754.1	1	STRG.2754.2	1
scaffold_9	starts_in_intron	17608174	17608174	-	asmbl_55627	none	blat.proc3829893.chain_181	1	STRG.11843.1,STRG.11843.2,blat.proc3829893.chain_182,blat.proc3829893.chain_183,blat.proc3829893.chain_184,blat.proc3829893.chain_185	6
scaffold_1	alt_donor	6299548	6299549	-	asmbl_357	none	STRG.424.5	1	STRG.424.2,blat.proc3829887.chain_306	2
scaffold_7	alt_donor	11224767	11224768	-	asmbl_49968	none	STRG.9257.1,blat.proc3829891.chain_1433	2	blat.proc3829891.chain_1432	1
scaffold_26	alternate_exon	1318707	1324625	-	asmbl_34675	none	STRG.27898.1,blat.proc3829901.chain_1143	2	STRG.27898.5	1
scaffold_2	retained_exon	14231966	14231969	-	asmbl_23603	none	blat.proc3829887.chain_2303	1	STRG.2418.1	1
scaffold_14	alternate_exon	6774876	6774999	-	asmbl_13145	none	blat.proc3829895.chain_1746	1	STRG.17107.2,blat.proc3829895.chain_1745	2
scaffold_2	ends_in_intron	3912279	3912279	-	asmbl_23050	none	blat.proc3829887.chain_1701	1	STRG.1825.1	1
scaffold_18	ends_in_intron	3838257	3838257	+	asmbl_20510	none	blat.proc3829881.chain_2001	1	STRG.21186.1,blat.proc3829881.chain_2000	2
scaffold_26	alt_acceptor	9044197	9044198	+	asmbl_35727	none	STRG.28452.2	1	STRG.28452.1,Trinity_GG_15751_c0_g1_i1,blat.proc3829885.chain_1495	3
scaffold_5	spliced_intron	1249677	1249957	-	asmbl_45235,asmbl_45240	none	STRG.5683.1,blat.proc3829889.chain_1782,blat.proc3829889.chain_1783,blat.proc3829889.chain_1784	4	Trinity_GG_20219_c0_g1_i5,Trinity_GG_20219_c0_g1_i6,blat.proc3829889.chain_1781,blat.proc3829889.chain_1785	4
scaffold_7	starts_in_intron	5343906	5343906	-	asmbl_49696	none	blat.proc3829891.chain_1208	1	STRG.8863.2	1
scaffold_26	starts_in_intron	10119967	10119967	-	asmbl_35090,asmbl_35094	none	STRG.28511.3,Trinity_GG_32936_c0_g1_i8,blat.proc3829901.chain_1632	3	STRG.28511.1,STRG.28511.2,Trinity_GG_32936_c0_g1_i11,Trinity_GG_32936_c0_g1_i13,Trinity_GG_32936_c0_g1_i3,Trinity_GG_32936_c0_g1_i5,blat.proc3829901.chain_1633,blat.proc3829901.chain_1634,blat.proc3829901.chain_1635,blat.proc3829901.chain_1636	10
scaffold_1	starts_in_intron	8754389	8754389	-	asmbl_495,asmbl_498	none	STRG.583.1,blat.proc3829887.chain_505,blat.proc3829887.chain_508	3	STRG.583.2,STRG.583.4,blat.proc3829887.chain_507,blat.proc3829887.chain_509	4
scaffold_3	alt_acceptor	12941558	12941559	-	asmbl_39196	none	STRG.3670.2	1	STRG.3670.1,Trinity_GG_19027_c0_g1_i2,blat.proc3829887.chain_3444	3
scaffold_5	alternate_exon	1097121	1097166	-	asmbl_45215	none	STRG.5657.4	1	STRG.5657.1,blat.proc3829889.chain_1801	2
scaffold_6	retained_intron	10898864	10899075	+	asmbl_47245	none	Trinity_GG_4335_c0_g1_i5,blat.proc3829875.chain_289	2	STRG.7901.1,STRG.7901.2,Trinity_GG_4335_c0_g1_i1,blat.proc3829875.chain_288,blat.proc3829875.chain_290,blat.proc3829875.chain_292	6
scaffold_6	retained_intron	7174170	7174368	+	asmbl_46994	none	blat.proc3829873.chain_3737	1	STRG.7621.1,STRG.7621.2,STRG.7621.3,STRG.7621.4,blat.proc3829873.chain_3736,blat.proc3829873.chain_3739	6
scaffold_2	alt_acceptor	15267919	15267920	+	asmbl_25020,asmbl_25021,asmbl_25022,asmbl_25026,asmbl_25027,asmbl_25028,asmbl_25029,asmbl_25030,asmbl_25031	none	STRG.2480.1,STRG.2480.2,STRG.2480.3,Trinity_GG_1353_c0_g1_i14,blat.proc3829871.chain_2514,blat.proc3829871.chain_2515,blat.proc3829871.chain_2518,blat.proc3829871.chain_2519,blat.proc3829871.chain_2520,blat.proc3829871.chain_2521,blat.proc3829871.chain_2522,blat.proc3829871.chain_2523	12	blat.proc3829871.chain_2516,blat.proc3829871.chain_2517	2
scaffold_19	ends_in_intron	12818668	12818668	-	asmbl_21756,asmbl_21757,asmbl_21758,asmbl_21760,asmbl_21764,asmbl_21765	none	STRG.22593.1,STRG.22593.2,STRG.22593.3,Trinity_GG_29568_c0_g1_i16,blat.proc3829897.chain_3275,blat.proc3829897.chain_3280,blat.proc3829897.chain_3281	7	Trinity_GG_29568_c0_g1_i15,blat.proc3829897.chain_3276	2
scaffold_10	spliced_intron	3732605	3732726	+	asmbl_4345,asmbl_4346	none	STRG.12193.1,STRG.12193.2,blat.proc3829877.chain_869,blat.proc3829877.chain_872	4	blat.proc3829877.chain_871	1
scaffold_3	retained_intron	13647877	13648874	-	asmbl_39227	none	STRG.3705.1,Trinity_GG_19021_c0_g1_i2,blat.proc3829887.chain_3437	3	STRG.3705.3,Trinity_GG_19021_c0_g1_i3,blat.proc3829887.chain_3435	3
scaffold_7	alt_donor	17339175	17339176	-	asmbl_50245,asmbl_50246	none	STRG.9603.1,STRG.9603.3	2	STRG.9603.2	1
scaffold_20	spliced_intron	1080419	1081286	-	asmbl_26462	none	STRG.22801.1,blat.proc3829897.chain_3588	2	STRG.22801.2,Trinity_GG_29737_c0_g1_i2,Trinity_GG_29737_c1_g1_i1,blat.proc3829897.chain_3589,blat.proc3829897.chain_3590	5
scaffold_4	retained_intron	18033877	18033924	-	asmbl_42091	none	STRG.5403.2	1	STRG.5403.1	1
scaffold_1	ends_in_intron	6981359	6981359	+	asmbl_1869	none	blat.proc3829871.chain_559	1	STRG.499.1,STRG.499.2,Trinity_GG_313_c0_g1_i2,blat.proc3829871.chain_556,blat.proc3829871.chain_557	5
scaffold_10	spliced_intron	17325221	17325630	-	asmbl_3952	none	STRG.13169.1,blat.proc3829893.chain_1573	2	STRG.13169.3,blat.proc3829893.chain_1572	2
scaffold_14	spliced_intron	15347218	15347549	-	asmbl_13695,asmbl_13696,asmbl_13697	none	STRG.17749.1,STRG.17749.2,STRG.17749.3,blat.proc3829895.chain_2512,blat.proc3829895.chain_2513,blat.proc3829895.chain_2514	6	blat.proc3829895.chain_2516	1
scaffold_4	alternate_exon	1904834	1904948	+	asmbl_42465	none	STRG.4202.1	1	STRG.4202.2,blat.proc3829873.chain_556	2
scaffold_8	skipped_exon	12810394	12810817	-	asmbl_53237	none	STRG.10465.1,blat.proc3829891.chain_2604	2	STRG.10465.2,blat.proc3829891.chain_2603	2
scaffold_17	alt_donor	1718953	1718954	-	asmbl_18773	none	STRG.19995.2,blat.proc3829897.chain_968	2	STRG.19995.1,blat.proc3829897.chain_969	2
scaffold_2	ends_in_intron	14535486	14535486	+	asmbl_24976	none	blat.proc3829871.chain_2646	1	STRG.2452.1,STRG.2452.2,STRG.2452.3,blat.proc3829871.chain_2647,blat.proc3829871.chain_2648	5
scaffold_15	starts_in_intron	11303941	11303941	+	asmbl_14437	none	Trinity_GG_10200_c0_g1_i5,blat.proc3829879.chain_3189	2	STRG.18591.1,blat.proc3829879.chain_3184,blat.proc3829879.chain_3185,blat.proc3829879.chain_3187	4
scaffold_2	alt_donor	15455005	15455006	+	asmbl_25063,asmbl_25064,asmbl_25065,asmbl_25066,asmbl_25067,asmbl_25069	none	STRG.2500.1,blat.proc3829871.chain_2679,blat.proc3829871.chain_2680,blat.proc3829871.chain_2681,blat.proc3829871.chain_2682,blat.proc3829871.chain_2683,blat.proc3829871.chain_2685	7	STRG.2500.2,blat.proc3829871.chain_2684	2
scaffold_8	spliced_intron	5216070	5216193	-	asmbl_52819	none	STRG.9958.1,Trinity_GG_22578_c0_g1_i2,blat.proc3829891.chain_2131	3	STRG.9958.2,Trinity_GG_22578_c0_g1_i1,blat.proc3829891.chain_2132	3
scaffold_3	starts_in_intron	11002101	11002101	+	asmbl_40282	none	blat.proc3829871.chain_3686	1	STRG.3557.1,blat.proc3829871.chain_3687	2
scaffold_2	retained_intron	6350944	6351046	-	asmbl_23221	none	Trinity_GG_18078_c0_g1_i4,blat.proc3829887.chain_1764	2	STRG.2000.2	1
scaffold_2	retained_intron	10373407	10373567	-	asmbl_23429,asmbl_23431,asmbl_23432	none	STRG.2212.1,STRG.2212.2,blat.proc3829887.chain_2110,blat.proc3829887.chain_2111	4	blat.proc3829887.chain_2109	1
scaffold_4	retained_exon	16873536	16873637	-	asmbl_41976,asmbl_41978	none	STRG.5279.1,blat.proc3829889.chain_1280,blat.proc3829889.chain_1282	3	STRG.5279.2	1
scaffold_10	alt_acceptor	6413088	6413089	-	asmbl_3370	none	STRG.12460.1	1	blat.proc3829893.chain_850	1
scaffold_3	retained_intron	13899490	13899649	+	asmbl_40425	none	Trinity_GG_2095_c0_g1_i4,blat.proc3829873.chain_142	2	STRG.3737.1,STRG.3737.2,blat.proc3829873.chain_143,blat.proc3829873.chain_144,blat.proc3829873.chain_145	5
scaffold_7	spliced_intron	4931699	4933377	+	asmbl_50650	none	blat.proc3829875.chain_1280	1	STRG.8834.3,Trinity_GG_4880_c0_g2_i1,blat.proc3829875.chain_1284	3
scaffold_24	skipped_exon	7201058	7202218	+	asmbl_32383	none	STRG.26750.2	1	STRG.26750.1	1
scaffold_25	alt_donor	9550387	9550388	+	asmbl_33819,asmbl_33820	none	STRG.27755.1,blat.proc3829885.chain_777,blat.proc3829885.chain_779	3	STRG.27755.3	1
scaffold_8	alt_donor	11851423	11851424	+	asmbl_52273,asmbl_52280	none	blat.proc3829875.chain_2966,blat.proc3829875.chain_2972	2	blat.proc3829875.chain_2973	1
scaffold_2	spliced_intron	5391853	5391982	-	asmbl_23175	none	STRG.1948.2	1	blat.proc3829887.chain_1756	1
scaffold_8	alt_donor	750956	750957	+	asmbl_51657	none	STRG.9719.2,blat.proc3829875.chain_2172	2	STRG.9719.1,blat.proc3829875.chain_2174	2
scaffold_19	spliced_intron	12251512	12251604	+	asmbl_22576,asmbl_22578	none	STRG.22543.1,STRG.22543.2,Trinity_GG_12459_c0_g1_i1,blat.proc3829881.chain_3466	4	Trinity_GG_12459_c0_g1_i2,blat.proc3829881.chain_3467	2
scaffold_25	alt_acceptor	9045820	9045821	-	asmbl_34447,asmbl_34448	none	STRG.27702.1,STRG.27702.3,blat.proc3829901.chain_982,blat.proc3829901.chain_985,blat.proc3829901.chain_986,blat.proc3829901.chain_988	6	blat.proc3829901.chain_990	1
scaffold_10	starts_in_intron	9061788	9061788	-	asmbl_3575	none	blat.proc3829893.chain_1164	1	STRG.12643.2,blat.proc3829893.chain_1169	2
scaffold_20	spliced_intron	9629566	9630290	+	asmbl_26024,asmbl_26027	none	STRG.23488.2,STRG.23488.3,blat.proc3829883.chain_572	3	STRG.23488.1,blat.proc3829883.chain_573,blat.proc3829883.chain_575	3
scaffold_19	alt_acceptor	3561074	3561075	+	asmbl_22128	none	STRG.22033.1	1	STRG.22033.2	1
scaffold_3	retained_intron	17364766	17365193	-	asmbl_39494,asmbl_39498	none	blat.proc3829889.chain_22,blat.proc3829889.chain_27	2	STRG.3972.3,blat.proc3829889.chain_25,blat.proc3829889.chain_31	3
scaffold_12	alt_donor	16401775	16401776	+	asmbl_9136	none	STRG.15385.5,Trinity_GG_8419_c0_g1_i7,blat.proc3829877.chain_3738	3	blat.proc3829877.chain_3732	1
scaffold_17	ends_in_intron	4085962	4085962	+	asmbl_17898	none	Trinity_GG_11046_c0_g1_i2,blat.proc3829881.chain_977	2	STRG.20156.1,Trinity_GG_11046_c0_g1_i1,blat.proc3829881.chain_976	3
scaffold_27	ends_in_intron	340928	340928	-	asmbl_36628	none	blat.proc3829901.chain_1658	1	STRG.28542.1,STRG.28542.2,STRG.28542.3,blat.proc3829901.chain_1659,blat.proc3829901.chain_1660,blat.proc3829901.chain_1661,blat.proc3829901.chain_1662	7
scaffold_12	alternate_exon	10611616	10611668	+	asmbl_8917	none	STRG.15029.3,Trinity_GG_8309_c0_g1_i1,blat.proc3829877.chain_3546	3	STRG.15029.1,blat.proc3829877.chain_3547	2
scaffold_21	starts_in_intron	8528226	8528226	+	asmbl_28831	none	blat.proc3829883.chain_1388	1	STRG.24375.1,blat.proc3829883.chain_1389,blat.proc3829883.chain_1391,blat.proc3829883.chain_1392	4
scaffold_4	skipped_exon	306262	307220	-	asmbl_41068	none	STRG.4128.1,Trinity_GG_19280_c0_g2_i3,blat.proc3829889.chain_176	3	STRG.4128.3,Trinity_GG_19280_c0_g2_i1,blat.proc3829889.chain_175	3
scaffold_23	alt_acceptor	9953648	9953649	-	asmbl_31830	none	STRG.26184.3	1	STRG.26184.1,STRG.26184.2,blat.proc3829899.chain_3241,blat.proc3829899.chain_3243	4
scaffold_13	skipped_exon	15635633	15637556	+	asmbl_11501	none	STRG.16594.2	1	STRG.16594.3	1
scaffold_1	skipped_exon	9312842	9313118	+	asmbl_1974	none	STRG.625.2	1	STRG.625.1,blat.proc3829871.chain_686	2
scaffold_14	retained_exon	12594208	12595128	+	asmbl_12416	none	STRG.17564.3	1	STRG.17564.1,STRG.17564.4,blat.proc3829879.chain_2187,blat.proc3829879.chain_2189	4
scaffold_15	starts_in_intron	13762623	13762623	-	asmbl_15680,asmbl_15684	none	STRG.18798.2,blat.proc3829895.chain_3566	2	STRG.18798.1,blat.proc3829895.chain_3562,blat.proc3829895.chain_3564	3
scaffold_15	retained_intron	1797670	1797717	-	asmbl_14985	none	blat.proc3829895.chain_2676	1	STRG.17966.1	1
scaffold_16	starts_in_intron	4602698	4602698	+	asmbl_16983	none	blat.proc3829881.chain_68	1	STRG.19235.1,STRG.19235.2,blat.proc3829881.chain_67	3
scaffold_11	starts_in_intron	5651922	5651922	+	asmbl_5536	none	Trinity_GG_7501_c0_g1_i2,blat.proc3829877.chain_2116	2	STRG.13620.1,blat.proc3829877.chain_2115,blat.proc3829877.chain_2117	3
scaffold_5	ends_in_intron	17226071	17226071	+	asmbl_44809	none	blat.proc3829873.chain_3035	1	STRG.6887.2,blat.proc3829873.chain_3028,blat.proc3829873.chain_3030	3
scaffold_4	starts_in_intron	8011123	8011123	+	asmbl_42866	none	Trinity_GG_2506_c0_g1_i1,blat.proc3829873.chain_885	2	STRG.4615.1,blat.proc3829873.chain_886	2
scaffold_9	retained_intron	17790249	17790655	-	asmbl_55644,asmbl_55645,asmbl_55647	none	STRG.11857.2,Trinity_GG_23527_c0_g1_i2,blat.proc3829893.chain_161,blat.proc3829893.chain_163	4	STRG.11857.1,Trinity_GG_23527_c0_g1_i1,blat.proc3829893.chain_162	3
scaffold_2	alt_acceptor	16403584	16403585	+	asmbl_25173	none	blat.proc3829871.chain_2793	1	blat.proc3829871.chain_2791	1
scaffold_14	ends_in_intron	15397744	15397744	-	asmbl_13705	none	Trinity_GG_26993_c0_g1_i4,blat.proc3829895.chain_2484	2	STRG.17757.1,STRG.17757.2,blat.proc3829895.chain_2485,blat.proc3829895.chain_2486	4
scaffold_15	alt_acceptor	4786838	4786839	-	asmbl_15167	none	STRG.18181.1	1	STRG.18181.2,blat.proc3829895.chain_2915	2
scaffold_8	alt_acceptor	4897731	4897732	+	asmbl_51861	none	STRG.9952.2	1	STRG.9952.1,blat.proc3829875.chain_2363,blat.proc3829875.chain_2364,blat.proc3829875.chain_2365,blat.proc3829875.chain_2366	5
scaffold_5	spliced_intron	9092983	9093116	+	asmbl_44272,asmbl_44273	none	STRG.6239.1,blat.proc3829873.chain_2405,blat.proc3829873.chain_2406	3	blat.proc3829873.chain_2407	1
scaffold_15	retained_exon	12039326	12039514	+	asmbl_14460,asmbl_14462	none	STRG.18655.1,blat.proc3829879.chain_3221,blat.proc3829879.chain_3223	3	STRG.18655.2	1
scaffold_6	alternate_exon	13918869	13919194	-	asmbl_48894,asmbl_48895,asmbl_48896,asmbl_48898	none	STRG.8132.1,STRG.8132.2,STRG.8132.3,blat.proc3829891.chain_438,blat.proc3829891.chain_439,blat.proc3829891.chain_440	6	STRG.8132.4,STRG.8132.5,STRG.8132.6,Trinity_GG_21636_c1_g1_i2,blat.proc3829891.chain_441	5
scaffold_13	ends_in_intron	5710134	5710134	-	asmbl_9674	none	blat.proc3829895.chain_596	1	STRG.15859.1,STRG.15859.2,blat.proc3829895.chain_595,blat.proc3829895.chain_597,blat.proc3829895.chain_599	5
scaffold_1	skipped_exon	20338943	20340702	+	asmbl_2603,asmbl_2606,asmbl_2609	none	STRG.1398.4,STRG.1398.5,blat.proc3829871.chain_1449,blat.proc3829871.chain_1452	4	blat.proc3829871.chain_1453	1
scaffold_19	starts_in_intron	13145498	13145498	+	asmbl_22665	none	Trinity_GG_12507_c0_g1_i2,blat.proc3829881.chain_3572	2	STRG.22622.1,STRG.22622.2,Trinity_GG_12507_c0_g1_i1,blat.proc3829881.chain_3571,blat.proc3829881.chain_3573	5
scaffold_6	spliced_intron	72768	72798	-	asmbl_47964,asmbl_47965	none	STRG.7058.2,STRG.7058.3	2	STRG.7058.1,STRG.7058.4	2
scaffold_3	alternate_exon	1447221	1447936	+	asmbl_39802	none	STRG.2961.1,blat.proc3829871.chain_3047	2	blat.proc3829871.chain_3048	1
scaffold_23	starts_in_intron	9470988	9470988	-	asmbl_31813	none	blat.proc3829899.chain_3235	1	STRG.26148.1,blat.proc3829899.chain_3234	2
scaffold_23	ends_in_intron	6988510	6988510	-	asmbl_31719	none	blat.proc3829899.chain_3074	1	STRG.26001.1,STRG.26001.2,STRG.26001.3,blat.proc3829899.chain_3072,blat.proc3829899.chain_3073	5
scaffold_13	spliced_intron	6761797	6761991	+	asmbl_10956,asmbl_10957	none	STRG.15952.1,blat.proc3829879.chain_632	2	STRG.15952.2,Trinity_GG_8761_c0_g1_i2,blat.proc3829879.chain_633,blat.proc3829879.chain_634	4
scaffold_15	skipped_exon	15857347	15857984	+	asmbl_14772	none	STRG.18964.2,Trinity_GG_10383_c0_g1_i8,blat.proc3829879.chain_3544	3	STRG.18964.1,STRG.18964.3,STRG.18964.4,STRG.18964.5,STRG.18964.6,Trinity_GG_10383_c0_g1_i3,Trinity_GG_10383_c0_g1_i7,blat.proc3829879.chain_3538,blat.proc3829879.chain_3539,blat.proc3829879.chain_3540,blat.proc3829879.chain_3542	11
scaffold_7	retained_exon	15247398	15247475	+	asmbl_51305	none	blat.proc3829875.chain_2041	1	STRG.9529.1,blat.proc3829875.chain_2039,blat.proc3829875.chain_2040	3
scaffold_2	alt_donor	3470183	3470184	+	asmbl_24309	none	STRG.1777.2	1	STRG.1777.1,Trinity_GG_1002_c0_g1_i1,blat.proc3829871.chain_1834	3
scaffold_28	spliced_intron	9225948	9226024	-	asmbl_37828	none	STRG.29944.2	1	STRG.29944.1,Trinity_GG_33803_c0_g1_i1,Trinity_GG_33803_c0_g1_i2,blat.proc3829901.chain_3059,blat.proc3829901.chain_3060	5
scaffold_4	retained_exon	306548	306715	-	asmbl_41069	none	STRG.4128.3,Trinity_GG_19280_c0_g2_i1,blat.proc3829889.chain_175	3	STRG.4128.1,Trinity_GG_19280_c0_g2_i3,blat.proc3829889.chain_176	3
scaffold_4	alt_acceptor	13076344	13076345	+	asmbl_43113	none	STRG.4945.4	1	STRG.4945.1,STRG.4945.2,STRG.4945.3,STRG.4945.5,blat.proc3829873.chain_1237,blat.proc3829873.chain_1238,blat.proc3829873.chain_1239,blat.proc3829873.chain_1240	8
scaffold_3	spliced_intron	19885475	19886465	-	asmbl_39618	none	blat.proc3829889.chain_144	1	STRG.4100.2,Trinity_GG_19264_c1_g1_i2,Trinity_GG_19264_c1_g1_i4,Trinity_GG_19264_c2_g1_i1,blat.proc3829889.chain_142,blat.proc3829889.chain_143,blat.proc3829889.chain_145	7
scaffold_10	ends_in_intron	13883969	13883969	+	asmbl_4899	none	blat.proc3829877.chain_1541	1	STRG.12962.1,STRG.12962.2,Trinity_GG_7145_c0_g1_i4,blat.proc3829877.chain_1540,blat.proc3829877.chain_1542	5
scaffold_9	retained_intron	6903544	6903648	-	asmbl_55057	none	STRG.11191.4	1	STRG.11191.1,STRG.11191.2,STRG.11191.3,STRG.11191.5,blat.proc3829891.chain_3366,blat.proc3829891.chain_3367,blat.proc3829891.chain_3368,blat.proc3829891.chain_3369,blat.proc3829891.chain_3370,blat.proc3829891.chain_3371,blat.proc3829891.chain_3372,blat.proc3829891.chain_3373,blat.proc3829891.chain_3374,blat.proc3829891.chain_3375	14
scaffold_13	alt_acceptor	3748422	3748423	+	asmbl_10721	none	Trinity_GG_8626_c0_g1_i1,blat.proc3829879.chain_381	2	STRG.15683.1,STRG.15683.2,Trinity_GG_8626_c0_g1_i4,blat.proc3829879.chain_382	4
scaffold_6	spliced_intron	17186531	17186619	-	asmbl_49115,asmbl_49116	none	STRG.8422.1,STRG.8422.2,Trinity_GG_21805_c0_g1_i2,blat.proc3829891.chain_725	4	Trinity_GG_21805_c0_g1_i1,blat.proc3829891.chain_726	2
scaffold_4	spliced_intron	14618985	14619065	+	asmbl_43234	none	STRG.5085.2	1	blat.proc3829873.chain_1429	1
scaffold_22	starts_in_intron	8298917	8298917	+	asmbl_29562	none	STRG.25167.1	1	blat.proc3829883.chain_2182	1
scaffold_12	retained_exon	4610037	4610122	-	asmbl_7547,asmbl_7548,asmbl_7550	none	STRG.14626.1,STRG.14626.2,blat.proc3829893.chain_2998,blat.proc3829893.chain_3000,blat.proc3829893.chain_3001	5	STRG.14626.3,blat.proc3829893.chain_2997	2
scaffold_4	alt_acceptor	14982191	14982192	+	asmbl_43254	none	STRG.5108.2	1	STRG.5108.1,blat.proc3829873.chain_1439	2
scaffold_24	alternate_exon	6725096	6726452	-	asmbl_32960	none	blat.proc3829901.chain_23	1	blat.proc3829901.chain_20	1
scaffold_15	alt_acceptor	9665939	9665940	-	asmbl_15414,asmbl_15415	none	STRG.18467.1,STRG.18467.3,blat.proc3829895.chain_3195	3	STRG.18467.2	1
scaffold_9	ends_in_intron	11815527	11815527	+	asmbl_54367	none	blat.proc3829877.chain_263	1	STRG.11485.1,Trinity_GG_6411_c0_g2_i1,blat.proc3829877.chain_265	3
scaffold_27	spliced_intron	3624384	3624770	+	asmbl_36177	none	STRG.28811.1,Trinity_GG_15953_c0_g1_i2,blat.proc3829885.chain_1904	3	Trinity_GG_15953_c0_g1_i6,blat.proc3829885.chain_1905,blat.proc3829885.chain_1907	3
scaffold_5	retained_exon	15044119	15044202	-	asmbl_46018,asmbl_46020,asmbl_46021	none	STRG.6692.2,STRG.6692.7,STRG.6692.9	3	STRG.6692.3,STRG.6692.6,Trinity_GG_20768_c0_g2_i1,blat.proc3829889.chain_2744	4
scaffold_13	alt_acceptor	11441530	11441531	-	asmbl_10056	none	STRG.16288.1,blat.proc3829895.chain_1039	2	STRG.16288.2,blat.proc3829895.chain_1037	2
scaffold_15	spliced_intron	13325003	13325106	+	asmbl_14573	none	Trinity_GG_10264_c0_g1_i4,blat.proc3829879.chain_3297	2	Trinity_GG_10264_c0_g1_i6,blat.proc3829879.chain_3296,blat.proc3829879.chain_3298,blat.proc3829879.chain_3299,blat.proc3829879.chain_3302,blat.proc3829879.chain_3304	6
scaffold_13	starts_in_intron	9325245	9325245	-	asmbl_9977	none	blat.proc3829895.chain_957	1	STRG.16187.1,STRG.16187.4,blat.proc3829895.chain_959	3
scaffold_21	starts_in_intron	57194	57194	-	asmbl_27301	none	blat.proc3829899.chain_733	1	STRG.23706.1,STRG.23706.2,STRG.23706.3,blat.proc3829899.chain_734,blat.proc3829899.chain_735,blat.proc3829899.chain_736	6
scaffold_17	skipped_exon	1302758	1303353	-	asmbl_18741	none	blat.proc3829897.chain_932	1	STRG.19954.1,blat.proc3829897.chain_927,blat.proc3829897.chain_930,blat.proc3829897.chain_931	4
scaffold_3	starts_in_intron	2183099	2183099	-	asmbl_38691	none	blat.proc3829887.chain_2803	1	STRG.3014.1,blat.proc3829885.chain_3316,blat.proc3829885.chain_3317,blat.proc3829887.chain_2805	4
scaffold_4	retained_intron	14115549	14115636	-	asmbl_41778	none	STRG.5030.2	1	STRG.5030.1,blat.proc3829889.chain_997	2
scaffold_8	retained_exon	9936836	9936938	-	asmbl_53074,asmbl_53075	none	STRG.10241.1,blat.proc3829891.chain_2423,blat.proc3829891.chain_2424	3	STRG.10241.2	1
scaffold_19	alt_acceptor	13162244	13162245	+	asmbl_22669	none	blat.proc3829881.chain_3594	1	STRG.22627.1,STRG.22627.2,blat.proc3829881.chain_3595	3
scaffold_10	alt_donor	3794613	3794614	-	asmbl_3145	none	STRG.12214.3	1	STRG.12214.1,blat.proc3829893.chain_665,blat.proc3829893.chain_667	3
scaffold_6	spliced_intron	8579544	8579666	+	asmbl_47085,asmbl_47086,asmbl_47087,asmbl_47088	none	STRG.7732.1,STRG.7732.2,STRG.7732.3,blat.proc3829875.chain_112	4	blat.proc3829875.chain_111	1
scaffold_14	retained_intron	11573661	11574063	-	asmbl_13482	none	STRG.17490.2,Trinity_GG_26806_c0_g1_i8	2	STRG.17490.1,STRG.17490.3,blat.proc3829895.chain_2172,blat.proc3829895.chain_2179	4
scaffold_3	retained_intron	4953609	4954271	+	asmbl_40005	none	Trinity_GG_1814_c0_g1_i2,blat.proc3829871.chain_3401	2	STRG.3189.1,blat.proc3829871.chain_3400	2
scaffold_17	ends_in_intron	10041671	10041671	-	asmbl_19279	none	blat.proc3829897.chain_1572	1	STRG.20605.1,blat.proc3829897.chain_1571	2
scaffold_11	alternate_exon	3768626	3777300	-	asmbl_6555	none	STRG.13488.4	1	STRG.13488.2	1
scaffold_8	retained_intron	18254364	18254410	+	asmbl_52537	none	STRG.10721.2,blat.proc3829875.chain_3178	2	STRG.10721.3	1
scaffold_15	alt_donor	2797848	2797849	+	asmbl_14022,asmbl_14023	none	STRG.18051.2,blat.proc3829879.chain_2697	2	STRG.18051.1,blat.proc3829879.chain_2696	2
scaffold_26	spliced_intron	426465	426666	+	asmbl_35208,asmbl_35209,asmbl_35212	none	STRG.27850.1,blat.proc3829885.chain_853,blat.proc3829885.chain_854,blat.proc3829885.chain_855	4	STRG.27851.1	1
scaffold_14	ends_in_intron	12221210	12221210	-	asmbl_13543	none	Trinity_GG_26858_c0_g1_i6	1	STRG.17537.1,blat.proc3829895.chain_2260,blat.proc3829895.chain_2263	3
scaffold_15	retained_exon	15188654	15189219	+	asmbl_14677,asmbl_14679,asmbl_14683,asmbl_14684,asmbl_14691	none	STRG.18906.3,blat.proc3829879.chain_3471,blat.proc3829879.chain_3475,blat.proc3829879.chain_3476,blat.proc3829879.chain_3481	5	blat.proc3829879.chain_3473,blat.proc3829879.chain_3487	2
scaffold_4	starts_in_intron	14982425	14982425	+	asmbl_43253	none	Trinity_GG_2861_c0_g1_i2,blat.proc3829873.chain_1438	2	STRG.5108.1,STRG.5108.2,STRG.5108.3,blat.proc3829873.chain_1437,blat.proc3829873.chain_1439	5
scaffold_28	retained_exon	6547487	6547549	-	asmbl_37681	none	STRG.29730.1	1	STRG.29730.4	1
scaffold_23	retained_intron	3573591	3574929	+	asmbl_30747	none	blat.proc3829883.chain_2595,blat.proc3829883.chain_2597	2	STRG.25757.2,Trinity_GG_14182_c0_g1_i4,blat.proc3829883.chain_2594	3
scaffold_4	alt_donor	19605367	19605368	-	asmbl_42222	none	STRG.5547.4	1	STRG.5547.1,STRG.5547.2	2
scaffold_13	ends_in_intron	5844268	5844268	-	asmbl_9695	none	Trinity_GG_25903_c0_g2_i1,blat.proc3829895.chain_574	2	STRG.15879.1,blat.proc3829895.chain_572,blat.proc3829895.chain_573	3
scaffold_2	alternate_exon	13398181	13398873	+	asmbl_24874,asmbl_24876	none	STRG.2357.2,blat.proc3829871.chain_2405,blat.proc3829871.chain_2407	3	STRG.2357.3,Trinity_GG_1292_c0_g1_i5,blat.proc3829871.chain_2406,blat.proc3829871.chain_2409	4
scaffold_15	spliced_intron	9818455	9818660	+	asmbl_14358,asmbl_14362,asmbl_14364	none	STRG.18487.1,blat.proc3829879.chain_3042,blat.proc3829879.chain_3044,blat.proc3829879.chain_3047	4	STRG.18487.2,blat.proc3829879.chain_3045,blat.proc3829879.chain_3046	3
scaffold_10	ends_in_intron	10308231	10308231	-	asmbl_3627	none	blat.proc3829893.chain_1178	1	STRG.12714.1,blat.proc3829893.chain_1179	2
scaffold_10	retained_intron	1425641	1425931	+	asmbl_4217,asmbl_4219	none	STRG.12005.2,Trinity_GG_6688_c0_g1_i8,blat.proc3829877.chain_727,blat.proc3829877.chain_732	4	STRG.12005.1,STRG.12005.4,STRG.12005.5,Trinity_GG_6688_c0_g1_i6,blat.proc3829877.chain_729,blat.proc3829877.chain_731	6
scaffold_27	alt_acceptor	2787859	2787860	+	asmbl_36064	none	blat.proc3829885.chain_1753	1	STRG.28736.1,blat.proc3829885.chain_1752,blat.proc3829885.chain_1755,blat.proc3829885.chain_1756	4
scaffold_4	alternate_exon	5649048	5651118	-	asmbl_41364	none	blat.proc3829889.chain_607	1	Trinity_GG_19533_c0_g1_i2,blat.proc3829889.chain_602	2
scaffold_2	spliced_intron	13894429	13894871	+	asmbl_24893	none	STRG.2378.1,Trinity_GG_1291_c0_g1_i2,blat.proc3829871.chain_2404	3	Trinity_GG_1291_c0_g1_i1,blat.proc3829871.chain_2403	2
scaffold_6	starts_in_intron	12207341	12207341	+	asmbl_47319	none	Trinity_GG_4376_c0_g1_i4,blat.proc3829875.chain_383	2	Trinity_GG_4376_c0_g1_i1,blat.proc3829875.chain_386	2
scaffold_18	starts_in_intron	238101	238101	-	asmbl_19603	none	STRG.20966.2	1	STRG.20966.1,STRG.20966.3,blat.proc3829897.chain_1862	3
scaffold_15	retained_exon	15188654	15188737	+	asmbl_14677,asmbl_14679,asmbl_14683,asmbl_14684,asmbl_14692	none	STRG.18906.2,blat.proc3829879.chain_3471,blat.proc3829879.chain_3475,blat.proc3829879.chain_3476,blat.proc3829879.chain_3481	5	STRG.18906.1,blat.proc3829879.chain_3473,blat.proc3829879.chain_3474,blat.proc3829879.chain_3477,blat.proc3829879.chain_3479,blat.proc3829879.chain_3482,blat.proc3829879.chain_3484,blat.proc3829879.chain_3487	8
scaffold_2	starts_in_intron	8864016	8864016	+	asmbl_24686	none	STRG.2147.3,Trinity_GG_1210_c0_g1_i5,blat.proc3829871.chain_2254	3	STRG.2147.1,STRG.2147.2,Trinity_GG_1210_c0_g1_i4,blat.proc3829871.chain_2252,blat.proc3829871.chain_2253,blat.proc3829871.chain_2255,blat.proc3829871.chain_2256	7
scaffold_18	alt_acceptor	9787711	9787712	-	asmbl_20118	none	STRG.21574.2	1	STRG.21574.1,blat.proc3829897.chain_2421	2
scaffold_12	alternate_exon	5464177	5464291	-	asmbl_7627,asmbl_7628,asmbl_7631	none	STRG.14690.1,STRG.14690.2,STRG.14690.5,blat.proc3829893.chain_3104,blat.proc3829893.chain_3105	5	STRG.14690.3,STRG.14690.4,blat.proc3829893.chain_3103	3
scaffold_24	alternate_exon	8697293	8697387	+	asmbl_32439	none	STRG.26862.1,blat.proc3829883.chain_3742	2	STRG.26862.2	1
scaffold_9	alternate_exon	12177375	12177403	+	asmbl_54398	none	STRG.11525.1	1	STRG.11525.2,Trinity_GG_6445_c0_g1_i1,blat.proc3829877.chain_322	3
scaffold_1	retained_intron	9513340	9513605	-	asmbl_546	none	blat.proc3829887.chain_541	1	STRG.643.1,blat.proc3829887.chain_543	2
scaffold_11	starts_in_intron	4639328	4639328	+	asmbl_5453	none	Trinity_GG_7453_c0_g1_i3,blat.proc3829877.chain_2037	2	STRG.13534.1,blat.proc3829877.chain_2038,blat.proc3829877.chain_2039	3
scaffold_26	ends_in_intron	421450	421450	+	asmbl_35207	none	STRG.27840.7	1	STRG.27840.1,blat.proc3829885.chain_857	2
scaffold_6	ends_in_intron	13973146	13973146	+	asmbl_47495	none	Trinity_GG_4475_c0_g1_i2,blat.proc3829875.chain_569	2	STRG.8142.1,Trinity_GG_4475_c0_g1_i3,blat.proc3829875.chain_570,blat.proc3829875.chain_571	4
scaffold_14	starts_in_intron	13600617	13600617	+	asmbl_12471	none	Trinity_GG_9688_c1_g1_i1,blat.proc3829879.chain_2309	2	STRG.17629.1,STRG.17629.2,blat.proc3829879.chain_2306,blat.proc3829879.chain_2307	4
scaffold_23	spliced_intron	7388982	7389133	+	asmbl_30987	none	STRG.26035.2	1	STRG.26035.1,blat.proc3829883.chain_2923	2
scaffold_20	skipped_exon	11085396	11086338	-	asmbl_27061	none	STRG.23609.2,Trinity_GG_30167_c1_g1_i3,blat.proc3829899.chain_617	3	STRG.23609.1,STRG.23609.3,Trinity_GG_30167_c1_g1_i1,Trinity_GG_30167_c1_g1_i2,blat.proc3829899.chain_616,blat.proc3829899.chain_618	6
scaffold_16	retained_intron	744159	744375	-	asmbl_16068,asmbl_16071	none	blat.proc3829897.chain_14,blat.proc3829897.chain_9	2	STRG.19044.1,blat.proc3829897.chain_10,blat.proc3829897.chain_13	3
scaffold_22	starts_in_intron	11474058	11474058	+	asmbl_29677	none	Trinity_GG_14065_c1_g1_i1,blat.proc3829883.chain_2408	2	STRG.25469.1,Trinity_GG_14065_c0_g1_i3,blat.proc3829883.chain_2405,blat.proc3829883.chain_2406	4
scaffold_12	retained_intron	16338959	16339103	+	asmbl_9127	none	blat.proc3829877.chain_3727	1	STRG.15376.1,blat.proc3829877.chain_3729	2
scaffold_11	spliced_intron	1982041	1982111	-	asmbl_6435	none	STRG.13348.3,blat.proc3829893.chain_1789	2	STRG.13348.1,STRG.13348.2,blat.proc3829893.chain_1790	3
scaffold_21	starts_in_intron	272683	272683	+	asmbl_28277	none	Trinity_GG_13143_c0_g1_i2,blat.proc3829883.chain_880	2	STRG.23711.1,Trinity_GG_13143_c0_g1_i1,blat.proc3829883.chain_879	3
scaffold_27	spliced_intron	4755122	4755207	+	asmbl_36270	none	STRG.28892.1	1	Trinity_GG_16015_c0_g1_i4	1
scaffold_5	alt_acceptor	16147974	16147975	+	asmbl_44712	none	STRG.6789.3	1	STRG.6789.1	1
scaffold_21	alt_donor	5775963	5775964	-	asmbl_27719	none	STRG.24099.2,blat.proc3829899.chain_1199	2	STRG.24099.1,STRG.24099.3,blat.proc3829899.chain_1196,blat.proc3829899.chain_1198,blat.proc3829899.chain_1200	5
scaffold_10	skipped_exon	6674039	6675082	-	asmbl_3403	none	blat.proc3829893.chain_1030	1	blat.proc3829893.chain_1027,blat.proc3829893.chain_1029,blat.proc3829893.chain_1032	3
scaffold_13	starts_in_intron	2995465	2995465	+	asmbl_10632	none	Trinity_GG_8581_c0_g1_i3,blat.proc3829879.chain_310	2	STRG.15589.1,STRG.15589.2,STRG.15589.3,blat.proc3829879.chain_309	4
scaffold_1	retained_intron	11800832	11801098	-	asmbl_677	none	STRG.794.3	1	blat.proc3829887.chain_691	1
scaffold_8	ends_in_intron	13137536	13137536	-	asmbl_53275	none	Trinity_GG_22847_c3_g1_i1,blat.proc3829891.chain_2645	2	STRG.10481.1,STRG.10481.2,STRG.10481.3,blat.proc3829891.chain_2640,blat.proc3829891.chain_2641,blat.proc3829891.chain_2642	6
scaffold_11	alternate_exon	8903914	8904123	+	asmbl_5808	none	STRG.13900.1,Trinity_GG_7624_c0_g1_i1,blat.proc3829877.chain_2315	3	STRG.13900.2,Trinity_GG_7624_c0_g1_i2,blat.proc3829877.chain_2316	3
scaffold_22	starts_in_intron	6996135	6996135	-	asmbl_30132	none	blat.proc3829899.chain_2121	1	blat.proc3829899.chain_2122	1
scaffold_1	alternate_exon	414525	414689	-	asmbl_20	none	STRG.21.1	1	STRG.21.2,blat.proc3829885.chain_3679,blat.proc3829885.chain_3680	3
scaffold_24	skipped_exon	9937385	9938269	-	asmbl_33144	none	STRG.26950.2	1	blat.proc3829901.chain_255	1
scaffold_1	retained_intron	5205899	5206482	+	asmbl_1704,asmbl_1705,asmbl_1708	none	blat.proc3829871.chain_396,blat.proc3829871.chain_397,blat.proc3829871.chain_398	3	STRG.323.1,STRG.323.2,STRG.323.3,blat.proc3829871.chain_399,blat.proc3829871.chain_400,blat.proc3829871.chain_401	6
scaffold_15	ends_in_intron	388380	388380	+	asmbl_13912	none	blat.proc3829879.chain_2570	1	STRG.17879.1,STRG.17879.2,STRG.17879.3,blat.proc3829879.chain_2569,blat.proc3829879.chain_2571,blat.proc3829879.chain_2574,blat.proc3829879.chain_2575	7
scaffold_16	spliced_intron	5395173	5395337	+	asmbl_17004,asmbl_17005,asmbl_17007	none	STRG.19275.1,STRG.19275.2,Trinity_GG_10554_c0_g1_i2,blat.proc3829881.chain_135,blat.proc3829881.chain_136,blat.proc3829881.chain_137	6	Trinity_GG_10554_c0_g1_i4,blat.proc3829881.chain_134	2
scaffold_11	starts_in_intron	3357943	3357943	+	asmbl_5383,asmbl_5384	none	blat.proc3829877.chain_1937,blat.proc3829877.chain_1938	2	STRG.13455.1	1
scaffold_13	ends_in_intron	2341350	2341350	+	asmbl_10574,asmbl_10586	none	STRG.15543.10,STRG.15543.11	2	STRG.15543.3,STRG.15543.4,STRG.15543.6,STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_156,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161,blat.proc3829879.chain_162	14
scaffold_10	retained_intron	3159617	3159862	+	asmbl_4309	none	STRG.12137.2,blat.proc3829877.chain_835	2	STRG.12137.1,blat.proc3829877.chain_833,blat.proc3829877.chain_834	3
scaffold_25	ends_in_intron	3120115	3120115	-	asmbl_34092	none	blat.proc3829901.chain_529	1	STRG.27233.1	1
scaffold_3	ends_in_intron	2668023	2668023	+	asmbl_39872	none	blat.proc3829871.chain_3146	1	STRG.3038.1,STRG.3038.2,STRG.3038.3,STRG.3038.4	4
scaffold_28	retained_intron	5233036	5233314	-	asmbl_37594,asmbl_37595	none	blat.proc3829901.chain_2683,blat.proc3829901.chain_2684	2	STRG.29652.1,STRG.29652.2,blat.proc3829901.chain_2678,blat.proc3829901.chain_2680,blat.proc3829901.chain_2685,blat.proc3829901.chain_2687	6
scaffold_15	retained_intron	15409993	15410226	+	asmbl_14720	none	blat.proc3829879.chain_3516	1	STRG.18921.2,STRG.18921.4,blat.proc3829879.chain_3515	3
scaffold_17	retained_intron	12187281	12187379	+	asmbl_18398	none	STRG.20742.2,blat.proc3829881.chain_1598	2	STRG.20742.3,blat.proc3829881.chain_1596	2
scaffold_10	retained_intron	715906	716550	-	asmbl_2905,asmbl_2907,asmbl_2908	none	STRG.11948.2,Trinity_GG_23680_c0_g1_i4,Trinity_GG_23680_c0_g1_i6,blat.proc3829893.chain_435,blat.proc3829893.chain_436	5	STRG.11948.1,Trinity_GG_23680_c0_g1_i7,blat.proc3829893.chain_434,blat.proc3829893.chain_438	4
scaffold_16	alternate_exon	7533047	7533132	+	asmbl_17146	none	STRG.19399.2	1	STRG.19399.1,blat.proc3829881.chain_274	2
scaffold_10	alt_acceptor	16532617	16532618	+	asmbl_4997	none	STRG.13112.3	1	STRG.13112.1,blat.proc3829877.chain_1619,blat.proc3829877.chain_1622	3
scaffold_13	alt_acceptor	16138116	16138117	+	asmbl_11533	none	STRG.16640.2	1	STRG.16640.1	1
scaffold_16	starts_in_intron	8590060	8590060	+	asmbl_17213	none	STRG.19477.9	1	STRG.19477.1,STRG.19477.3,STRG.19477.7,STRG.19477.8,blat.proc3829881.chain_353,blat.proc3829881.chain_354,blat.proc3829881.chain_359	7
scaffold_19	spliced_intron	678886	678963	+	asmbl_22000	none	STRG.21838.1,blat.proc3829881.chain_2826	2	Trinity_GG_12091_c0_g1_i4,blat.proc3829881.chain_2825	2
scaffold_1	alt_donor	3270357	3270358	-	asmbl_142	none	STRG.199.4	1	STRG.199.1,blat.proc3829887.chain_97,blat.proc3829887.chain_99	3
scaffold_2	spliced_intron	14462273	14462391	-	asmbl_23617	none	STRG.2443.1,blat.proc3829887.chain_2313	2	blat.proc3829887.chain_2312	1
scaffold_21	retained_intron	5170097	5170194	-	asmbl_27647,asmbl_27652	none	Trinity_GG_30430_c0_g1_i8,blat.proc3829899.chain_1130,blat.proc3829899.chain_1131	3	STRG.24038.1,blat.proc3829899.chain_1128,blat.proc3829899.chain_1129,blat.proc3829899.chain_1132,blat.proc3829899.chain_1134	5
scaffold_12	alt_acceptor	4613096	4613097	-	asmbl_7554	none	STRG.14626.4	1	STRG.14626.1,STRG.14626.2,blat.proc3829893.chain_2996,blat.proc3829893.chain_2997,blat.proc3829893.chain_2998,blat.proc3829893.chain_2999,blat.proc3829893.chain_3001	7
scaffold_19	starts_in_intron	98200	98200	+	asmbl_21977	none	Trinity_GG_12063_c0_g1_i2,blat.proc3829881.chain_2777	2	STRG.21813.1,blat.proc3829881.chain_2778	2
scaffold_18	alt_acceptor	1648374	1648375	-	asmbl_19667	none	STRG.21035.1,blat.proc3829897.chain_1864	2	STRG.21035.2,blat.proc3829897.chain_1865	2
scaffold_9	alt_acceptor	5085765	5085766	+	asmbl_53973	none	STRG.11075.1	1	STRG.11075.2	1
scaffold_8	retained_intron	4393829	4393852	+	asmbl_51833	none	STRG.9917.1,Trinity_GG_5534_c1_g1_i1,Trinity_GG_5534_c1_g1_i3,blat.proc3829875.chain_2449	4	STRG.9917.2	1
scaffold_16	alternate_exon	10446839	10448429	+	asmbl_17339,asmbl_17340	none	STRG.19602.2,STRG.19602.5	2	blat.proc3829881.chain_424	1
scaffold_21	alt_acceptor	8123095	8123096	+	asmbl_28804	none	STRG.24332.2	1	STRG.24332.1,blat.proc3829883.chain_1427	2
scaffold_10	retained_exon	5390518	5390544	+	asmbl_4447	none	STRG.12356.2	1	STRG.12356.1,blat.proc3829877.chain_992	2
scaffold_6	starts_in_intron	11558404	11558404	-	asmbl_48700	none	STRG.7947.2	1	STRG.7947.1,STRG.7947.3,blat.proc3829891.chain_206,blat.proc3829891.chain_207	4
scaffold_5	spliced_intron	11991739	11992075	-	asmbl_45816	none	STRG.6447.3	1	STRG.6447.4,blat.proc3829889.chain_2519,blat.proc3829889.chain_2520	3
scaffold_8	retained_intron	10040800	10041091	-	asmbl_53091	none	STRG.10251.1,blat.proc3829891.chain_2365	2	STRG.10251.2,blat.proc3829891.chain_2366	2
scaffold_8	alt_acceptor	10793567	10793568	+	asmbl_52171	none	STRG.10300.3,blat.proc3829875.chain_2820	2	STRG.10300.2,blat.proc3829875.chain_2821	2
scaffold_8	alternate_exon	15210939	15211127	+	asmbl_52383	none	STRG.10546.1	1	STRG.10546.2	1
scaffold_4	starts_in_intron	8989985	8989985	-	asmbl_41539,asmbl_41541	none	STRG.4717.2,blat.proc3829889.chain_758	2	STRG.4717.1,STRG.4717.3,STRG.4717.4,STRG.4717.5,blat.proc3829889.chain_759	5
scaffold_22	starts_in_intron	4188929	4188929	+	asmbl_29262,asmbl_29264	none	STRG.24817.2,blat.proc3829883.chain_1840,blat.proc3829883.chain_1841	3	STRG.24817.1	1
scaffold_14	spliced_intron	7444437	7444909	-	asmbl_13187,asmbl_13188	none	STRG.17168.1,Trinity_GG_26575_c0_g1_i1,blat.proc3829895.chain_1748	3	STRG.17168.2,Trinity_GG_26575_c0_g1_i2,blat.proc3829895.chain_1747	3
scaffold_12	retained_exon	1056071	1056406	+	asmbl_8420	none	STRG.14436.2	1	STRG.14436.1,STRG.14436.4,blat.proc3829877.chain_2886	3
scaffold_4	alt_donor	4550847	4550848	+	asmbl_42619,asmbl_42620,asmbl_42622	none	STRG.4367.2,STRG.4367.3,blat.proc3829873.chain_736,blat.proc3829873.chain_737,blat.proc3829873.chain_738	5	STRG.4367.1	1
scaffold_8	starts_in_intron	12407509	12407509	+	asmbl_52300	none	blat.proc3829875.chain_2942	1	STRG.10414.1,blat.proc3829875.chain_2943	2
scaffold_3	alt_acceptor	12703122	12703123	-	asmbl_39183	none	STRG.3662.2	1	STRG.3662.1,blat.proc3829887.chain_3415	2
scaffold_1	alternate_exon	11801246	11801419	-	asmbl_679	none	STRG.794.1	1	blat.proc3829887.chain_691	1
scaffold_15	ends_in_intron	5383894	5383894	-	asmbl_15214	none	Trinity_GG_27279_c1_g1_i1,blat.proc3829895.chain_3009	2	STRG.18214.1,blat.proc3829895.chain_3010	2
scaffold_24	alt_donor	3391878	3391879	-	asmbl_32813	none	STRG.26516.1	1	STRG.26516.2	1
scaffold_4	alt_donor	5651634	5651635	-	asmbl_41352,asmbl_41357,asmbl_41359,asmbl_41360,asmbl_41362,asmbl_41363,asmbl_41365,asmbl_41366,asmbl_41369	none	STRG.4469.2,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_605,blat.proc3829889.chain_608,blat.proc3829889.chain_610,blat.proc3829889.chain_611,blat.proc3829889.chain_612,blat.proc3829889.chain_613	9	STRG.4469.3,blat.proc3829889.chain_607	2
scaffold_1	starts_in_intron	6816961	6816961	-	asmbl_388	none	blat.proc3829887.chain_381	1	STRG.476.1	1
scaffold_18	retained_intron	4848613	4848998	+	asmbl_20602,asmbl_20603	none	STRG.21267.2,Trinity_GG_11716_c0_g1_i2,Trinity_GG_11716_c0_g1_i5,blat.proc3829881.chain_2172,blat.proc3829881.chain_2174	5	STRG.21267.1,Trinity_GG_11716_c0_g1_i1,Trinity_GG_11716_c0_g1_i7,blat.proc3829881.chain_2169,blat.proc3829881.chain_2173	5
scaffold_27	starts_in_intron	4706092	4706092	-	asmbl_36917	none	blat.proc3829901.chain_2057	1	STRG.28888.1,blat.proc3829901.chain_2058	2
scaffold_9	alternate_exon	3666613	3667129	+	asmbl_53887	none	STRG.10962.1,Trinity_GG_6100_c0_g1_i3,blat.proc3829875.chain_3440	3	STRG.10962.2	1
scaffold_15	retained_intron	15409801	15410185	+	asmbl_14720	none	blat.proc3829879.chain_3516	1	STRG.18921.8	1
scaffold_12	spliced_intron	2984860	2985625	-	asmbl_7474,asmbl_7475	none	STRG.14524.1,STRG.14524.2,blat.proc3829893.chain_2904	3	Trinity_GG_25109_c0_g1_i1,blat.proc3829893.chain_2903	2
scaffold_9	alternate_exon	16554170	16554478	-	asmbl_55542	none	STRG.11782.1,blat.proc3829893.chain_65	2	blat.proc3829893.chain_64	1
scaffold_12	retained_intron	14289469	14289681	-	asmbl_8134	none	Trinity_GG_25533_c0_g1_i4,blat.proc3829893.chain_3650	2	STRG.15255.1,STRG.15255.2,STRG.15255.3,blat.proc3829893.chain_3648,blat.proc3829893.chain_3649	5
scaffold_15	retained_exon	4231073	4231265	+	asmbl_14074	none	blat.proc3829879.chain_2811	1	STRG.18160.1,blat.proc3829879.chain_2809,blat.proc3829879.chain_2810,blat.proc3829879.chain_2813,blat.proc3829879.chain_2814	5
scaffold_26	ends_in_intron	5982523	5982523	+	asmbl_35589	none	blat.proc3829885.chain_1322	1	STRG.28298.1,Trinity_GG_15650_c0_g1_i4,blat.proc3829885.chain_1321,blat.proc3829885.chain_1323,blat.proc3829885.chain_1324,blat.proc3829885.chain_1325	6
scaffold_18	retained_exon	8726426	8726888	+	asmbl_20883,asmbl_20884,asmbl_20885	none	STRG.21533.1,STRG.21533.2,STRG.21533.3,blat.proc3829881.chain_2483,blat.proc3829881.chain_2485,blat.proc3829881.chain_2488	6	STRG.21533.4	1
scaffold_1	spliced_intron	170665	170776	+	asmbl_1396	none	STRG.14.1,Trinity_GG_21_c0_g1_i1,blat.proc3829871.chain_33	3	Trinity_GG_21_c0_g1_i2,blat.proc3829871.chain_34	2
scaffold_2	retained_intron	17445635	17445797	-	asmbl_23737	none	STRG.2626.2,Trinity_GG_18463_c0_g1_i2	2	STRG.2626.1	1
scaffold_26	starts_in_intron	5493529	5493529	+	asmbl_35532	none	Trinity_GG_15605_c0_g1_i2,blat.proc3829885.chain_1243	2	STRG.28235.1,blat.proc3829885.chain_1244	2
scaffold_1	spliced_intron	12334369	12335043	-	asmbl_716,asmbl_717	none	blat.proc3829887.chain_735,blat.proc3829887.chain_736	2	blat.proc3829887.chain_737,blat.proc3829887.chain_746	2
scaffold_15	alt_acceptor	3021700	3021701	+	asmbl_14035	none	STRG.18078.1,blat.proc3829879.chain_2717	2	STRG.18078.2,blat.proc3829879.chain_2716	2
scaffold_9	retained_exon	16282311	16282358	-	asmbl_55528	none	STRG.11770.2,blat.proc3829893.chain_148	2	STRG.11770.1,blat.proc3829893.chain_149	2
scaffold_4	spliced_intron	4423769	4423970	-	asmbl_41249,asmbl_41251	none	STRG.4342.1,STRG.4342.3,blat.proc3829889.chain_473	3	STRG.4342.2,blat.proc3829889.chain_471	2
scaffold_4	starts_in_intron	7619300	7619300	-	asmbl_41465	none	Trinity_GG_19549_c0_g1_i1	1	STRG.4596.1,blat.proc3829889.chain_643	2
scaffold_7	ends_in_intron	1146115	1146115	-	asmbl_49522	none	Trinity_GG_21935_c0_g1_i1,blat.proc3829891.chain_971	2	STRG.8612.1,blat.proc3829891.chain_970	2
scaffold_6	alt_donor	16054115	16054116	-	asmbl_49033	none	STRG.8339.2,blat.proc3829891.chain_661	2	STRG.8339.1,blat.proc3829891.chain_662	2
scaffold_8	alt_donor	18089772	18089773	+	asmbl_52520	none	blat.proc3829875.chain_3182	1	STRG.10702.1,blat.proc3829875.chain_3180	2
scaffold_9	alt_donor	11876574	11876575	+	asmbl_54373	none	STRG.11498.1	1	Trinity_GG_6418_c0_g1_i2,blat.proc3829877.chain_280	2
scaffold_1	alt_donor	3270863	3270864	-	asmbl_139,asmbl_141	none	STRG.199.1,blat.proc3829887.chain_97,blat.proc3829887.chain_99	3	STRG.199.4	1
scaffold_11	ends_in_intron	4866224	4866224	+	asmbl_5494	none	blat.proc3829877.chain_2063	1	STRG.13574.1,blat.proc3829877.chain_2061	2
scaffold_19	ends_in_intron	10821864	10821864	+	asmbl_22465	none	blat.proc3829881.chain_3322	1	STRG.22410.1,STRG.22410.2,Trinity_GG_12375_c0_g1_i3,blat.proc3829881.chain_3323,blat.proc3829881.chain_3324	5
scaffold_1	alt_acceptor	14626424	14626425	+	asmbl_2387,asmbl_2388	none	STRG.1062.1,blat.proc3829871.chain_1096,blat.proc3829871.chain_1097	3	STRG.1062.2	1
scaffold_9	alternate_exon	6905140	6905233	-	asmbl_55062	none	Trinity_GG_23218_c0_g1_i5,blat.proc3829891.chain_3339	2	STRG.11190.2,blat.proc3829891.chain_3337	2
scaffold_7	alt_acceptor	18776287	18776288	-	asmbl_50324	none	STRG.9684.4	1	blat.proc3829891.chain_1876,blat.proc3829891.chain_1879,blat.proc3829891.chain_1880	3
scaffold_15	skipped_exon	4133120	4133882	-	asmbl_15138	none	STRG.18148.1	1	STRG.18148.2,blat.proc3829895.chain_2889	2
scaffold_14	skipped_exon	15584170	15585856	+	asmbl_12612	none	STRG.17785.4	1	STRG.17785.1,STRG.17785.2,STRG.17785.3	3
scaffold_24	alternate_exon	10132254	10132338	+	asmbl_32547	none	STRG.26962.3	1	STRG.26962.1	1
scaffold_4	skipped_exon	13114475	13115627	-	asmbl_41716,asmbl_41717	none	STRG.4951.1,blat.proc3829889.chain_1007,blat.proc3829889.chain_1008	3	STRG.4951.2,STRG.4951.3,STRG.4951.4,blat.proc3829889.chain_1009	4
scaffold_27	starts_in_intron	6194801	6194801	+	asmbl_36338	none	Trinity_GG_16038_c0_g2_i1,blat.proc3829885.chain_2106	2	STRG.28993.2,STRG.28993.5	2
scaffold_13	alternate_exon	12868175	12868667	-	asmbl_10110	none	STRG.16367.1	1	STRG.16367.3,Trinity_GG_26182_c0_g1_i1,blat.proc3829895.chain_1109	3
scaffold_10	ends_in_intron	2786886	2786886	-	asmbl_3050	none	Trinity_GG_23730_c1_g1_i1,blat.proc3829893.chain_521	2	blat.proc3829893.chain_522	1
scaffold_26	starts_in_intron	9312201	9312201	+	asmbl_35737,asmbl_35738,asmbl_35741	none	STRG.28479.2,blat.proc3829885.chain_1513,blat.proc3829885.chain_1514	3	STRG.28479.1	1
scaffold_18	alt_acceptor	3733080	3733081	-	asmbl_19802	none	STRG.21177.2,blat.proc3829897.chain_2068	2	STRG.21177.1,blat.proc3829897.chain_2069	2
scaffold_5	skipped_exon	16518924	16519444	-	asmbl_46129	none	STRG.6833.1,blat.proc3829889.chain_2877	2	STRG.6833.2,blat.proc3829889.chain_2876	2
scaffold_16	retained_intron	433622	434014	-	asmbl_16046,asmbl_16050,asmbl_16051	none	blat.proc3829897.chain_19,blat.proc3829897.chain_23,blat.proc3829897.chain_24	3	STRG.19039.1,blat.proc3829897.chain_21,blat.proc3829897.chain_26	3
scaffold_2	spliced_intron	4788146	4788732	+	asmbl_24406,asmbl_24408	none	STRG.1897.5,blat.proc3829871.chain_1853	2	STRG.1897.2,STRG.1897.4,blat.proc3829871.chain_1852	3
scaffold_2	spliced_intron	7466796	7467432	-	asmbl_23286	none	STRG.2075.4	1	STRG.2075.2,STRG.2075.3,Trinity_GG_18127_c0_g1_i18,blat.proc3829887.chain_1893,blat.proc3829887.chain_1898	5
scaffold_1	retained_intron	6299428	6299553	-	asmbl_355,asmbl_358	none	STRG.424.3,blat.proc3829887.chain_303	2	STRG.424.1,STRG.424.2,blat.proc3829887.chain_304,blat.proc3829887.chain_306,blat.proc3829887.chain_307	5
scaffold_1	alt_donor	6299771	6299772	-	asmbl_354,asmbl_355,asmbl_357	none	STRG.424.2,STRG.424.5,blat.proc3829887.chain_303,blat.proc3829887.chain_306	4	STRG.424.4	1
scaffold_12	retained_intron	10187622	10187770	-	asmbl_7862,asmbl_7863,asmbl_7864	none	STRG.14979.3,STRG.14979.4,blat.proc3829893.chain_3402	3	STRG.14979.6	1
scaffold_7	spliced_intron	5235519	5236725	+	asmbl_50682,asmbl_50686	none	STRG.8853.1,blat.proc3829875.chain_1292,blat.proc3829875.chain_1296	3	STRG.8853.2,blat.proc3829875.chain_1293	2
scaffold_1	starts_in_intron	17918994	17918994	+	asmbl_2524	none	Trinity_GG_745_c0_g1_i5,blat.proc3829871.chain_1318	2	STRG.1258.2,STRG.1258.3	2
scaffold_12	retained_intron	9972719	9972986	-	asmbl_7834	none	Trinity_GG_25333_c0_g1_i4,blat.proc3829893.chain_3315	2	STRG.14954.1,Trinity_GG_25333_c0_g1_i3,blat.proc3829893.chain_3318	3
scaffold_7	retained_intron	1235347	1235447	+	asmbl_50468,asmbl_50469,asmbl_50470,asmbl_50485	none	STRG.8627.2,STRG.8627.6,STRG.8627.8,Trinity_GG_4740_c0_g1_i13,Trinity_GG_4740_c0_g1_i14,blat.proc3829875.chain_1044,blat.proc3829875.chain_1045,blat.proc3829875.chain_1048,blat.proc3829875.chain_1049	9	STRG.8627.5,blat.proc3829875.chain_1043	2
scaffold_18	spliced_intron	1904443	1905350	-	asmbl_19690,asmbl_19692,asmbl_19695,asmbl_19696,asmbl_19699,asmbl_19700,asmbl_19701,asmbl_19703,asmbl_19704,asmbl_19706	none	STRG.21072.2,STRG.21072.4,STRG.21072.9,Trinity_GG_28789_c0_g2_i1,blat.proc3829897.chain_1890,blat.proc3829897.chain_1892,blat.proc3829897.chain_1898,blat.proc3829897.chain_1902,blat.proc3829897.chain_1904	9	STRG.21072.10,STRG.21072.3,Trinity_GG_28789_c2_g1_i1,blat.proc3829897.chain_1906	4
scaffold_2	retained_exon	18951171	18951207	+	asmbl_25289	none	Trinity_GG_1522_c0_g1_i11	1	STRG.2768.1,STRG.2768.3,Trinity_GG_1522_c0_g1_i2	3
scaffold_26	alt_donor	7519025	7519026	+	asmbl_35648	none	STRG.28368.2	1	STRG.28368.1,blat.proc3829885.chain_1377	2
scaffold_25	alternate_exon	8704920	8705023	+	asmbl_33752	none	blat.proc3829885.chain_691,blat.proc3829885.chain_702	2	STRG.27679.1,STRG.27679.2,STRG.27679.3,blat.proc3829885.chain_694,blat.proc3829885.chain_698,blat.proc3829885.chain_701	6
scaffold_20	alt_acceptor	428803	428804	+	asmbl_25505,asmbl_25506,asmbl_25507	none	STRG.22729.1,STRG.22729.2,STRG.22729.5,Trinity_GG_12572_c0_g1_i1,Trinity_GG_33839_c0_g1_i1,blat.proc3829881.chain_3689	6	STRG.22729.4	1
scaffold_9	skipped_exon	9656031	9656875	+	asmbl_54210	none	blat.proc3829877.chain_101	1	STRG.11332.1,STRG.11332.2,blat.proc3829877.chain_100,blat.proc3829877.chain_98	4
scaffold_13	starts_in_intron	6384235	6384235	-	asmbl_9743	none	Trinity_GG_25973_c1_g1_i2,blat.proc3829895.chain_701	2	STRG.15913.1,blat.proc3829895.chain_700	2
scaffold_1	alt_donor	19006450	19006451	+	asmbl_2559	none	STRG.1322.1	1	STRG.1322.3	1
scaffold_3	starts_in_intron	12456223	12456223	-	asmbl_39165	none	blat.proc3829887.chain_3410	1	STRG.3640.1,STRG.3640.2,blat.proc3829887.chain_3408,blat.proc3829887.chain_3409	4
scaffold_11	spliced_intron	11999468	11999662	-	asmbl_7039	none	STRG.14111.1,Trinity_GG_24898_c0_g1_i4	2	STRG.14111.3,Trinity_GG_24898_c0_g1_i3,blat.proc3829893.chain_2515	3
scaffold_14	alternate_exon	8008700	8010469	+	asmbl_12167	none	STRG.17203.1,blat.proc3829879.chain_1952	2	STRG.17203.2,STRG.17203.3,blat.proc3829879.chain_1947	3
scaffold_23	alt_acceptor	10897605	10897606	+	asmbl_31180	none	STRG.26269.1,blat.proc3829883.chain_3190	2	STRG.26269.2,blat.proc3829883.chain_3191	2
scaffold_23	starts_in_intron	6632663	6632663	+	asmbl_30936	none	blat.proc3829883.chain_2812	1	STRG.25985.2,blat.proc3829883.chain_2813,blat.proc3829883.chain_2814,blat.proc3829883.chain_2815,blat.proc3829883.chain_2816,blat.proc3829883.chain_2817	6
scaffold_5	retained_exon	205391	205546	-	asmbl_45147	none	STRG.5583.1,blat.proc3829889.chain_1689	2	STRG.5583.2,blat.proc3829889.chain_1688	2
scaffold_12	retained_intron	7422321	7422559	-	asmbl_7716	none	blat.proc3829893.chain_3201	1	STRG.14807.1,blat.proc3829893.chain_3198,blat.proc3829893.chain_3200	3
scaffold_2	retained_intron	16414525	16414765	-	asmbl_23705	none	blat.proc3829887.chain_2413	1	STRG.2585.1,STRG.2585.2,STRG.2585.3,blat.proc3829887.chain_2409,blat.proc3829887.chain_2410,blat.proc3829887.chain_2412	6
scaffold_17	starts_in_intron	9974200	9974200	+	asmbl_18264	none	Trinity_GG_11297_c1_g1_i1,blat.proc3829881.chain_1445	2	STRG.20603.2,STRG.20603.3	2
scaffold_27	alt_donor	975036	975037	+	asmbl_35931,asmbl_35933,asmbl_35936	none	STRG.28576.1,Trinity_GG_15816_c0_g1_i1,Trinity_GG_15816_c0_g1_i5,Trinity_GG_15816_c0_g1_i6,blat.proc3829885.chain_1616,blat.proc3829885.chain_1617,blat.proc3829885.chain_1621	7	STRG.28576.2	1
scaffold_14	retained_exon	3225735	3225851	+	asmbl_11900	none	STRG.16895.1	1	STRG.16895.2,STRG.16895.3	2
scaffold_17	alt_acceptor	3434531	3434532	-	asmbl_18863	none	STRG.20111.1	1	STRG.20111.2	1
scaffold_7	alt_acceptor	7612328	7612329	-	asmbl_49764	none	STRG.9004.1,blat.proc3829891.chain_1278	2	STRG.9004.2,STRG.9004.3,STRG.9004.4,blat.proc3829891.chain_1280	4
scaffold_5	retained_intron	12840721	12841915	+	asmbl_44498,asmbl_44499,asmbl_44500	none	STRG.6508.2,STRG.6508.3,blat.proc3829873.chain_2644	3	STRG.6508.1,Trinity_GG_3545_c0_g1_i3,blat.proc3829873.chain_2643	3
scaffold_10	starts_in_intron	5804406	5804406	+	asmbl_4481	none	Trinity_GG_6876_c0_g1_i1,blat.proc3829877.chain_1032	2	STRG.12391.1,blat.proc3829877.chain_1033	2
scaffold_9	retained_intron	9596820	9596951	-	asmbl_55174,asmbl_55175	none	STRG.11315.1,STRG.11315.2,Trinity_GG_23261_c0_g1_i1,Trinity_GG_23261_c0_g1_i3,blat.proc3829891.chain_3425,blat.proc3829891.chain_3426	6	STRG.11315.3	1
scaffold_28	alt_acceptor	1641661	1641662	+	asmbl_38011	none	STRG.29333.3	1	STRG.29333.1,STRG.29333.2,blat.proc3829885.chain_2464,blat.proc3829885.chain_2465	4
scaffold_2	alt_acceptor	9889747	9889748	-	asmbl_23415	none	blat.proc3829887.chain_2074	1	STRG.2191.1,blat.proc3829887.chain_2073,blat.proc3829887.chain_2075	3
scaffold_23	ends_in_intron	4033304	4033304	+	asmbl_30776	none	STRG.25793.2	1	STRG.25793.1	1
scaffold_22	alt_donor	11544027	11544028	+	asmbl_29695	none	STRG.25485.1	1	STRG.25485.3,blat.proc3829883.chain_2362	2
scaffold_26	alt_donor	9089202	9089203	-	asmbl_35039	none	STRG.28455.1,blat.proc3829901.chain_1605	2	STRG.28455.2,STRG.28455.3,blat.proc3829901.chain_1604	3
scaffold_11	retained_intron	2101255	2101441	-	asmbl_6452	none	STRG.13364.2,blat.proc3829893.chain_1825	2	STRG.13364.3,blat.proc3829893.chain_1826	2
scaffold_9	retained_intron	17851854	17852001	+	asmbl_54629,asmbl_54630	none	STRG.11860.3,Trinity_GG_6607_c0_g1_i9,blat.proc3829877.chain_588	3	STRG.11860.1,Trinity_GG_6607_c0_g1_i6,blat.proc3829877.chain_589	3
scaffold_14	skipped_exon	7564739	7566078	-	asmbl_13211	none	STRG.17187.1,blat.proc3829895.chain_1875	2	STRG.17187.2	1
scaffold_19	ends_in_intron	5636881	5636881	-	asmbl_21390,asmbl_21391	none	blat.proc3829897.chain_2910,blat.proc3829897.chain_2914	2	blat.proc3829897.chain_2911,blat.proc3829897.chain_2913	2
scaffold_19	starts_in_intron	7583511	7583511	+	asmbl_22277	none	blat.proc3829881.chain_3173	1	STRG.22230.1,STRG.22230.2,blat.proc3829881.chain_3168,blat.proc3829881.chain_3171	4
scaffold_10	retained_intron	3927526	3927935	-	asmbl_3156	none	STRG.12230.2	1	blat.proc3829893.chain_690	1
scaffold_1	retained_intron	11408932	11409031	+	asmbl_2088	none	Trinity_GG_466_c0_g1_i1,blat.proc3829871.chain_811	2	STRG.749.1,Trinity_GG_466_c0_g1_i2,blat.proc3829871.chain_810	3
scaffold_2	retained_intron	956724	956897	-	asmbl_22850,asmbl_22852	none	STRG.1572.2,Trinity_GG_17872_c0_g1_i2,blat.proc3829887.chain_1426	3	STRG.1572.1,blat.proc3829887.chain_1425	2
scaffold_9	ends_in_intron	11824808	11824808	-	asmbl_55281,asmbl_55282	none	blat.proc3829891.chain_3533,blat.proc3829891.chain_3534	2	STRG.11490.2,STRG.11490.4	2
scaffold_6	retained_intron	14197562	14197732	+	asmbl_47529	none	Trinity_GG_4445_c0_g1_i3,blat.proc3829875.chain_526	2	STRG.8178.3,blat.proc3829875.chain_528	2
scaffold_19	retained_intron	3559309	3561160	+	asmbl_22125,asmbl_22126,asmbl_22127	none	STRG.22033.3,STRG.22033.4,Trinity_GG_12191_c0_g1_i2,Trinity_GG_12191_c1_g1_i1,Trinity_GG_12191_c2_g1_i1,blat.proc3829881.chain_2992,blat.proc3829881.chain_2993,blat.proc3829881.chain_2997,blat.proc3829881.chain_2998	9	STRG.22033.2	1
scaffold_11	retained_exon	6614791	6614888	-	asmbl_6703	none	STRG.13692.1,blat.proc3829893.chain_2145	2	STRG.13692.2,blat.proc3829893.chain_2144	2
scaffold_14	starts_in_intron	11233563	11233563	-	asmbl_13442	none	blat.proc3829895.chain_2154	1	STRG.17442.1,blat.proc3829895.chain_2155	2
scaffold_28	alt_donor	3821693	3821694	-	asmbl_37498,asmbl_37499	none	STRG.29556.2,blat.proc3829901.chain_2575	2	STRG.29556.1,blat.proc3829901.chain_2574,blat.proc3829901.chain_2576	3
scaffold_6	ends_in_intron	16292030	16292030	-	asmbl_49048	none	Trinity_GG_21772_c0_g2_i1,blat.proc3829891.chain_669	2	STRG.8349.1,blat.proc3829891.chain_666	2
scaffold_4	retained_exon	16883546	16883674	-	asmbl_41983	none	STRG.5276.1,Trinity_GG_19953_c0_g1_i1,blat.proc3829889.chain_1320	3	STRG.5276.2	1
scaffold_7	alternate_exon	8564247	8564281	-	asmbl_49829	none	blat.proc3829891.chain_1367	1	STRG.9077.2	1
scaffold_2	spliced_intron	15265851	15265947	+	asmbl_25020,asmbl_25024,asmbl_25025,asmbl_25026,asmbl_25027,asmbl_25028,asmbl_25029,asmbl_25031	none	STRG.2480.1,STRG.2480.3,blat.proc3829871.chain_2514,blat.proc3829871.chain_2516,blat.proc3829871.chain_2517,blat.proc3829871.chain_2518,blat.proc3829871.chain_2519,blat.proc3829871.chain_2520,blat.proc3829871.chain_2522	9	STRG.2480.2,blat.proc3829871.chain_2515,blat.proc3829871.chain_2523	3
scaffold_14	alt_acceptor	11760883	11760884	-	asmbl_13513,asmbl_13515	none	STRG.17517.1,STRG.17517.2,blat.proc3829895.chain_2241	3	STRG.17517.3,blat.proc3829895.chain_2240	2
scaffold_26	alt_acceptor	6301383	6301384	-	asmbl_34941	none	STRG.28309.3	1	STRG.28309.1,STRG.28309.2,blat.proc3829901.chain_1480,blat.proc3829901.chain_1481	4
scaffold_15	spliced_intron	15409801	15410226	+	asmbl_14719	none	STRG.18921.5,blat.proc3829879.chain_3518	2	blat.proc3829879.chain_3516	1
scaffold_13	retained_exon	8699291	8699329	+	asmbl_11126,asmbl_11127	none	STRG.16125.1,blat.proc3829879.chain_807,blat.proc3829879.chain_808	3	STRG.16125.2,blat.proc3829879.chain_809	2
scaffold_20	spliced_intron	10249203	10249289	-	asmbl_27021	none	STRG.23558.1,blat.proc3829899.chain_558	2	blat.proc3829899.chain_557	1
scaffold_13	starts_in_intron	401817	401817	-	asmbl_9303	none	Trinity_GG_25691_c0_g1_i10,blat.proc3829895.chain_228	2	STRG.15428.1,STRG.15428.2,STRG.15428.3,Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i25,Trinity_GG_25691_c0_g1_i7,Trinity_GG_25691_c0_g1_i8,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_220,blat.proc3829895.chain_221,blat.proc3829895.chain_222,blat.proc3829895.chain_223,blat.proc3829895.chain_224,blat.proc3829895.chain_226,blat.proc3829895.chain_229,blat.proc3829895.chain_230,blat.proc3829895.chain_232,blat.proc3829895.chain_233	21
scaffold_4	retained_intron	5772794	5774235	-	asmbl_41378	none	STRG.4473.2,blat.proc3829889.chain_589	2	STRG.4473.1,Trinity_GG_19525_c0_g1_i1,blat.proc3829889.chain_588	3
scaffold_9	retained_intron	17851315	17851392	+	asmbl_54629	none	STRG.11860.3	1	STRG.11860.1,Trinity_GG_6607_c0_g1_i6,Trinity_GG_6607_c0_g1_i9,blat.proc3829877.chain_588,blat.proc3829877.chain_589	5
scaffold_8	starts_in_intron	9169513	9169513	-	asmbl_53014	none	blat.proc3829891.chain_2230	1	STRG.10173.1,STRG.10173.2,STRG.10173.3	3
scaffold_8	alternate_exon	17813120	17818769	+	asmbl_52498	none	STRG.10687.2,Trinity_GG_5905_c0_g1_i4,blat.proc3829875.chain_3120	3	STRG.10687.3,Trinity_GG_5905_c0_g1_i1,blat.proc3829875.chain_3122	3
scaffold_17	alternate_exon	4640622	4640737	-	asmbl_18915	none	STRG.20183.2,blat.proc3829897.chain_1088	2	blat.proc3829897.chain_1087	1
scaffold_14	spliced_intron	7216560	7216831	+	asmbl_12112,asmbl_12114	none	STRG.17138.1,Trinity_GG_9432_c0_g1_i1,blat.proc3829879.chain_1870,blat.proc3829879.chain_1872	4	Trinity_GG_9432_c0_g1_i2,blat.proc3829879.chain_1871	2
scaffold_23	starts_in_intron	6688940	6688940	+	asmbl_30941	none	Trinity_GG_14326_c1_g1_i5,Trinity_GG_14326_c1_g1_i8,blat.proc3829883.chain_2847,blat.proc3829883.chain_2848	4	blat.proc3829883.chain_2849	1
scaffold_6	ends_in_intron	5047856	5047856	+	asmbl_46854	none	Trinity_GG_4069_c2_g1_i1,blat.proc3829873.chain_3553	2	STRG.7475.1	1
scaffold_27	alt_donor	4944498	4944499	+	asmbl_36282,asmbl_36283,asmbl_36284,asmbl_36285,asmbl_36288,asmbl_36289	none	STRG.28914.1,STRG.28914.2,STRG.28914.3,STRG.28914.4,STRG.28914.6,STRG.28914.7,blat.proc3829885.chain_2067,blat.proc3829885.chain_2069	8	STRG.28914.5	1
scaffold_9	spliced_intron	8948604	8948646	-	asmbl_55122	none	STRG.11270.1	1	Trinity_GG_23217_c0_g1_i2,blat.proc3829891.chain_3335	2
scaffold_10	alt_donor	6867770	6867771	-	asmbl_3423	none	blat.proc3829893.chain_991,blat.proc3829893.chain_998	2	STRG.12505.1,blat.proc3829893.chain_994,blat.proc3829893.chain_997,blat.proc3829893.chain_999	4
scaffold_4	retained_exon	17580545	17580691	+	asmbl_43401,asmbl_43404	none	STRG.5347.1,STRG.5347.3	2	STRG.5347.2	1
scaffold_6	skipped_exon	3041910	3042596	-	asmbl_48166	none	STRG.7302.2,blat.proc3829889.chain_3318	2	STRG.7302.3,blat.proc3829889.chain_3316	2
scaffold_10	starts_in_intron	2721205	2721205	+	asmbl_4280	none	blat.proc3829877.chain_815	1	STRG.12081.1,STRG.12081.2,STRG.12081.3,STRG.12081.4,Trinity_GG_6735_c0_g1_i3,Trinity_GG_6735_c0_g1_i4,blat.proc3829877.chain_813,blat.proc3829877.chain_814,blat.proc3829877.chain_816	9
scaffold_27	alt_donor	9945040	9945041	+	asmbl_36502	none	STRG.29204.1,blat.proc3829885.chain_2341	2	blat.proc3829885.chain_2340	1
scaffold_6	skipped_exon	9131836	9134144	+	asmbl_47143,asmbl_47153,asmbl_47154	none	STRG.7784.2,blat.proc3829875.chain_195,blat.proc3829875.chain_197	3	STRG.7784.1,blat.proc3829875.chain_198,blat.proc3829875.chain_201,blat.proc3829875.chain_203	4
scaffold_1	retained_intron	14190668	14191031	-	asmbl_879	none	blat.proc3829887.chain_948	1	STRG.1005.1,blat.proc3829887.chain_944,blat.proc3829887.chain_945,blat.proc3829887.chain_947,blat.proc3829887.chain_949	5
scaffold_43	retained_intron	547	687	-	asmbl_43674	none	STRG.30025.5	1	STRG.30025.1,STRG.30025.2,STRG.30025.3,STRG.30025.4	4
scaffold_26	spliced_intron	3623024	3623045	+	asmbl_35334	none	STRG.28026.3	1	Trinity_GG_15465_c1_g1_i1	1
scaffold_16	starts_in_intron	8042502	8042502	+	asmbl_17172	none	blat.proc3829881.chain_281	1	STRG.19437.1,STRG.19437.2,Trinity_GG_10630_c0_g1_i2,Trinity_GG_10630_c0_g1_i4,blat.proc3829881.chain_279,blat.proc3829881.chain_282,blat.proc3829881.chain_283	7
scaffold_27	skipped_exon	3020508	3022748	+	asmbl_36124,asmbl_36125,asmbl_36131	none	STRG.28769.1,STRG.28769.2,blat.proc3829885.chain_1779	3	blat.proc3829885.chain_1780,blat.proc3829885.chain_1782	2
scaffold_17	skipped_exon	2355973	2358162	+	asmbl_17768,asmbl_17769	none	STRG.20017.2,STRG.20017.7	2	STRG.20017.1,STRG.20017.4,STRG.20017.5,STRG.20017.6,blat.proc3829881.chain_852,blat.proc3829881.chain_853	6
scaffold_3	retained_intron	10276182	10276586	+	asmbl_40210	none	Trinity_GG_1953_c0_g1_i6,blat.proc3829871.chain_3624,blat.proc3829871.chain_3626	3	STRG.3461.1,STRG.3461.3,blat.proc3829871.chain_3621,blat.proc3829871.chain_3622,blat.proc3829871.chain_3623	5
scaffold_21	starts_in_intron	2151263	2151263	-	asmbl_27458	none	STRG.23822.1,blat.proc3829899.chain_829	2	STRG.23822.2,blat.proc3829899.chain_828,blat.proc3829899.chain_830	3
scaffold_10	alternate_exon	9548108	9548401	+	asmbl_4678	none	Trinity_GG_7015_c0_g1_i7,blat.proc3829877.chain_1284	2	STRG.12692.1,STRG.12692.2,blat.proc3829877.chain_1283	3
scaffold_6	alt_donor	6939244	6939245	+	asmbl_46963	none	blat.proc3829873.chain_3706	1	STRG.7596.1,STRG.7596.2,blat.proc3829873.chain_3708	3
scaffold_11	starts_in_intron	8078944	8078944	-	asmbl_6803	none	blat.proc3829893.chain_2201	1	STRG.13802.2,STRG.13802.3,STRG.13802.4,STRG.13802.5,Trinity_GG_24711_c0_g1_i13,Trinity_GG_24711_c0_g1_i17,Trinity_GG_24711_c0_g1_i18,Trinity_GG_24711_c0_g1_i3,Trinity_GG_24711_c0_g1_i4,Trinity_GG_24711_c0_g1_i7,Trinity_GG_24711_c0_g1_i8,blat.proc3829893.chain_2197,blat.proc3829893.chain_2198,blat.proc3829893.chain_2202,blat.proc3829893.chain_2204,blat.proc3829893.chain_2205,blat.proc3829893.chain_2206,blat.proc3829893.chain_2208,blat.proc3829893.chain_2209,blat.proc3829893.chain_2210,blat.proc3829893.chain_2211	21
scaffold_21	retained_intron	1657218	1657472	+	asmbl_28369,asmbl_28373	none	Trinity_GG_13211_c0_g1_i1,Trinity_GG_13211_c0_g1_i6,blat.proc3829883.chain_990,blat.proc3829883.chain_991	4	STRG.23807.1,Trinity_GG_13211_c0_g1_i2,Trinity_GG_13211_c0_g1_i3,Trinity_GG_13211_c0_g1_i4,Trinity_GG_13211_c0_g1_i7,blat.proc3829883.chain_988,blat.proc3829883.chain_989,blat.proc3829883.chain_992,blat.proc3829883.chain_993	9
scaffold_19	ends_in_intron	10067967	10067967	+	asmbl_22418	none	STRG.22381.2,blat.proc3829881.chain_3300	2	STRG.22381.1,STRG.22381.3,blat.proc3829881.chain_3297,blat.proc3829881.chain_3298,blat.proc3829881.chain_3299	5
scaffold_24	spliced_intron	8950507	8950872	-	asmbl_33117	none	STRG.26897.1,blat.proc3829901.chain_211	2	Trinity_GG_32064_c0_g1_i3,blat.proc3829901.chain_209	2
scaffold_2	retained_exon	16277814	16278169	+	asmbl_25127,asmbl_25128,asmbl_25131,asmbl_25132,asmbl_25134,asmbl_25135,asmbl_25136	none	STRG.2564.1,STRG.2564.3,blat.proc3829871.chain_2780,blat.proc3829871.chain_2781,blat.proc3829871.chain_2782,blat.proc3829871.chain_2784,blat.proc3829871.chain_2785,blat.proc3829871.chain_2786	8	blat.proc3829871.chain_2777,blat.proc3829871.chain_2783	2
scaffold_9	alt_acceptor	13954780	13954781	-	asmbl_55432	none	STRG.11650.1	1	blat.proc3829893.chain_43	1
scaffold_3	retained_exon	17536305	17536373	-	asmbl_39516,asmbl_39517,asmbl_39519	none	STRG.3987.1,STRG.3987.2,STRG.3987.4,blat.proc3829889.chain_89,blat.proc3829889.chain_90	5	STRG.3987.3,blat.proc3829889.chain_91,blat.proc3829889.chain_92	3
scaffold_18	alternate_exon	2050078	2050796	-	asmbl_19728	none	STRG.21084.1,Trinity_GG_28833_c0_g1_i1,Trinity_GG_28833_c1_g1_i1,blat.proc3829897.chain_1993,blat.proc3829897.chain_1994	5	STRG.21084.2,STRG.21084.3	2
scaffold_16	skipped_exon	12022195	12022852	-	asmbl_16561	none	STRG.19718.1,blat.proc3829897.chain_670	2	STRG.19718.2,blat.proc3829897.chain_671	2
scaffold_5	spliced_intron	11993128	11993287	-	asmbl_45811,asmbl_45815,asmbl_45816	none	STRG.6447.3,STRG.6447.4,STRG.6447.5,blat.proc3829889.chain_2519	4	blat.proc3829889.chain_2520	1
scaffold_10	ends_in_intron	11595414	11595414	+	asmbl_4761	none	Trinity_GG_7057_c2_g1_i1	1	STRG.12807.1,STRG.12807.2	2
scaffold_12	alt_acceptor	7351773	7351774	+	asmbl_8712	none	STRG.14801.2	1	STRG.14801.1,blat.proc3829877.chain_3300	2
scaffold_15	retained_intron	13327877	13328035	+	asmbl_14573,asmbl_14574	none	Trinity_GG_10264_c0_g1_i4,Trinity_GG_10264_c0_g1_i6,blat.proc3829879.chain_3297,blat.proc3829879.chain_3299	4	STRG.18763.1,blat.proc3829879.chain_3296,blat.proc3829879.chain_3298,blat.proc3829879.chain_3303,blat.proc3829879.chain_3304	5
scaffold_19	alt_donor	12393050	12393051	-	asmbl_21690	none	STRG.22557.3,blat.proc3829897.chain_3268	2	STRG.22557.1,STRG.22557.2,blat.proc3829897.chain_3269,blat.proc3829897.chain_3270,blat.proc3829897.chain_3271,blat.proc3829897.chain_3272	6
scaffold_11	retained_intron	13035748	13036295	-	asmbl_7092,asmbl_7097	none	STRG.14169.2,STRG.14169.3,Trinity_GG_24917_c0_g2_i1,blat.proc3829893.chain_2578	4	blat.proc3829893.chain_2576	1
scaffold_13	retained_intron	4602805	4604926	-	asmbl_9602	none	STRG.15781.2,Trinity_GG_25880_c0_g3_i1,blat.proc3829895.chain_531	3	STRG.15781.1,Trinity_GG_25880_c0_g1_i1,blat.proc3829895.chain_530	3
scaffold_22	alt_acceptor	500616	500617	+	asmbl_29155	none	STRG.24682.3	1	STRG.24682.1,STRG.24682.2,blat.proc3829883.chain_1656,blat.proc3829883.chain_1657	4
scaffold_8	skipped_exon	10059557	10060449	-	asmbl_53094	none	STRG.10258.2,blat.proc3829891.chain_2381	2	STRG.10258.1,blat.proc3829891.chain_2380	2
scaffold_13	alt_acceptor	12104833	12104834	+	asmbl_11316	none	Trinity_GG_8989_c0_g1_i5,blat.proc3829879.chain_1104	2	STRG.16334.1,Trinity_GG_8989_c0_g1_i1,blat.proc3829879.chain_1102	3
scaffold_28	alternate_exon	6066596	6066690	+	asmbl_38316	none	STRG.29708.2	1	STRG.29708.1	1
scaffold_15	starts_in_intron	1712168	1712168	+	asmbl_13978,asmbl_13979	none	STRG.17968.3,blat.proc3829879.chain_2609	2	STRG.17968.1,STRG.17968.2,blat.proc3829879.chain_2610,blat.proc3829879.chain_2611,blat.proc3829879.chain_2612,blat.proc3829879.chain_2614	6
scaffold_8	spliced_intron	12027883	12028191	+	asmbl_52293,asmbl_52295	none	STRG.10394.1,STRG.10394.2,Trinity_GG_5804_c0_g1_i3,blat.proc3829875.chain_2930,blat.proc3829875.chain_2931	5	Trinity_GG_5804_c0_g1_i2,blat.proc3829875.chain_2932	2
scaffold_20	alt_donor	11695322	11695323	-	asmbl_27115	none	blat.proc3829899.chain_665	1	STRG.23665.1,blat.proc3829899.chain_667	2
scaffold_9	retained_intron	11777366	11777484	+	asmbl_54360	none	Trinity_GG_6374_c0_g1_i1,blat.proc3829877.chain_212	2	STRG.11478.1,STRG.11478.2	2
scaffold_17	ends_in_intron	10074560	10074560	+	asmbl_18296	none	blat.proc3829881.chain_1453	1	STRG.20614.1,STRG.20614.2,Trinity_GG_11298_c0_g1_i1,Trinity_GG_11298_c0_g1_i2,blat.proc3829881.chain_1449,blat.proc3829881.chain_1450,blat.proc3829881.chain_1451	7
scaffold_4	alt_acceptor	1062805	1062806	-	asmbl_41104	none	STRG.4161.2	1	STRG.4161.1,Trinity_GG_19316_c0_g1_i1,blat.proc3829889.chain_246	3
scaffold_18	spliced_intron	6813788	6813985	+	asmbl_20714,asmbl_20715	none	STRG.21383.1,STRG.21383.2,blat.proc3829881.chain_2345,blat.proc3829881.chain_2346	4	Trinity_GG_11805_c0_g1_i3,blat.proc3829881.chain_2347	2
scaffold_24	skipped_exon	9953362	9954371	-	asmbl_33146,asmbl_33147,asmbl_33148,asmbl_33151,asmbl_33154	none	STRG.26947.1,STRG.26947.8,blat.proc3829901.chain_245,blat.proc3829901.chain_248,blat.proc3829901.chain_249,blat.proc3829901.chain_250	6	STRG.26947.3,STRG.26947.4	2
scaffold_8	alt_acceptor	12717488	12717489	+	asmbl_52332	none	STRG.10440.2,blat.proc3829875.chain_2923	2	STRG.10440.1,blat.proc3829875.chain_2922	2
scaffold_26	starts_in_intron	5761124	5761124	-	asmbl_34895	none	STRG.28258.1,blat.proc3829901.chain_1409	2	STRG.28258.2	1
scaffold_22	alternate_exon	761423	761456	+	asmbl_29188	none	STRG.24717.2	1	STRG.24717.1,Trinity_GG_13667_c0_g1_i1,blat.proc3829883.chain_1771	3
scaffold_18	starts_in_intron	2830658	2830658	+	asmbl_20457	none	blat.proc3829881.chain_1918	1	STRG.21133.1,STRG.21133.2,STRG.21133.3,blat.proc3829881.chain_1915,blat.proc3829881.chain_1916,blat.proc3829881.chain_1920,blat.proc3829881.chain_1923	7
scaffold_21	retained_intron	407848	408231	-	asmbl_27338,asmbl_27340,asmbl_27342,asmbl_27344,asmbl_27345	none	STRG.23722.1,STRG.23722.3,STRG.23722.4,STRG.23722.5,Trinity_GG_30229_c0_g1_i2,Trinity_GG_30229_c0_g1_i7,blat.proc3829899.chain_768,blat.proc3829899.chain_770,blat.proc3829899.chain_773,blat.proc3829899.chain_774	10	STRG.23722.2,Trinity_GG_30229_c0_g1_i1,Trinity_GG_30229_c0_g1_i9,blat.proc3829899.chain_769,blat.proc3829899.chain_771,blat.proc3829899.chain_772	6
scaffold_17	retained_intron	477860	478200	-	asmbl_18666	none	blat.proc3829897.chain_826	1	STRG.19878.1,blat.proc3829897.chain_827	2
scaffold_22	starts_in_intron	4364297	4364297	+	asmbl_29286	none	Trinity_GG_13729_c1_g1_i1,blat.proc3829883.chain_1869	2	STRG.24839.2,Trinity_GG_13729_c1_g1_i2,blat.proc3829883.chain_1870	3
scaffold_18	alt_acceptor	7520532	7520533	-	asmbl_19988	none	STRG.21442.1	1	STRG.21442.2	1
scaffold_5	alt_donor	13087127	13087128	-	asmbl_45887	none	STRG.6534.1,blat.proc3829889.chain_2599	2	STRG.6534.2,blat.proc3829889.chain_2600	2
scaffold_9	starts_in_intron	16547621	16547621	-	asmbl_55541	none	blat.proc3829893.chain_62	1	STRG.11783.1,blat.proc3829893.chain_63	2
scaffold_16	alternate_exon	789470	791687	+	asmbl_16835,asmbl_16836,asmbl_16837	none	STRG.19046.1,STRG.19046.2,STRG.19046.3,blat.proc3829879.chain_3590,blat.proc3829879.chain_3591,blat.proc3829879.chain_3593	6	blat.proc3829879.chain_3592	1
scaffold_1	retained_intron	5542906	5543635	-	asmbl_275	none	Trinity_GG_17203_c1_g1_i1,blat.proc3829887.chain_229	2	STRG.344.1,blat.proc3829887.chain_228	2
scaffold_27	spliced_intron	3090524	3090653	-	asmbl_36839,asmbl_36840,asmbl_36841,asmbl_36844,asmbl_36845,asmbl_36846	none	STRG.28775.1,STRG.28775.3,STRG.28775.4,STRG.28775.5,blat.proc3829901.chain_1946,blat.proc3829901.chain_1947,blat.proc3829901.chain_1948,blat.proc3829901.chain_1950,blat.proc3829901.chain_1951	9	STRG.28775.2,Trinity_GG_33109_c0_g1_i3,blat.proc3829901.chain_1949	3
scaffold_3	alt_donor	13424556	13424557	-	asmbl_39216	none	STRG.3690.4	1	STRG.3690.1,STRG.3690.2,STRG.3690.3,STRG.3690.5	4
scaffold_21	retained_intron	6620794	6620944	+	asmbl_28696,asmbl_28697	none	Trinity_GG_13416_c1_g1_i1,Trinity_GG_13416_c1_g1_i2,blat.proc3829883.chain_1360,blat.proc3829883.chain_1361	4	STRG.24175.1	1
scaffold_25	ends_in_intron	9091647	9091647	+	asmbl_33773	none	STRG.27705.2	1	STRG.27705.1,blat.proc3829885.chain_742,blat.proc3829885.chain_743	3
scaffold_2	alternate_exon	17613833	17619276	+	asmbl_25220	none	STRG.2650.2,Trinity_GG_1511_c0_g1_i1,Trinity_GG_1513_c0_g1_i1,blat.proc3829871.chain_2856,blat.proc3829871.chain_2863	5	blat.proc3829871.chain_2857	1
scaffold_2	alt_donor	7408527	7408528	-	asmbl_23277,asmbl_23282	none	STRG.2065.1,Trinity_GG_18123_c0_g1_i2,blat.proc3829887.chain_1877,blat.proc3829887.chain_1879	4	STRG.2065.3,blat.proc3829887.chain_1876	2
scaffold_4	spliced_intron	12691444	12691546	-	asmbl_41695	none	STRG.4910.1,blat.proc3829889.chain_920	2	STRG.4910.2,blat.proc3829889.chain_919,blat.proc3829889.chain_922	3
scaffold_8	skipped_exon	10211267	10211751	+	asmbl_52144	none	STRG.10268.2,Trinity_GG_5645_c0_g1_i1,blat.proc3829875.chain_2658	3	STRG.10268.1,Trinity_GG_5645_c0_g1_i2,blat.proc3829875.chain_2657	3
scaffold_27	retained_exon	5017042	5017098	+	asmbl_36294,asmbl_36295	none	STRG.28909.1,STRG.28909.2,blat.proc3829885.chain_2040,blat.proc3829885.chain_2042	4	STRG.28909.3,Trinity_GG_16013_c0_g1_i3,blat.proc3829885.chain_2041	3
scaffold_5	starts_in_intron	14731389	14731389	-	asmbl_45995	none	blat.proc3829889.chain_2714	1	STRG.6667.1,blat.proc3829889.chain_2713,blat.proc3829889.chain_2716	3
scaffold_10	alternate_exon	13779419	13779487	-	asmbl_3837,asmbl_3838	none	STRG.12968.2,blat.proc3829893.chain_1502	2	STRG.12968.3,blat.proc3829893.chain_1501	2
scaffold_24	skipped_exon	9591552	9592747	-	asmbl_33128	none	STRG.26924.1,blat.proc3829901.chain_225	2	STRG.26924.2,STRG.26924.3	2
scaffold_21	retained_intron	2162273	2162399	-	asmbl_27461	none	blat.proc3829899.chain_825	1	STRG.23826.1,blat.proc3829899.chain_826	2
scaffold_6	alternate_exon	2482403	2482546	-	asmbl_48079	none	STRG.7236.3	1	blat.proc3829889.chain_3223	1
scaffold_12	spliced_intron	9972719	9972986	-	asmbl_7833	none	STRG.14954.1,Trinity_GG_25333_c0_g1_i3,blat.proc3829893.chain_3318	3	Trinity_GG_25333_c0_g1_i4,blat.proc3829893.chain_3315	2
scaffold_6	starts_in_intron	13985727	13985727	-	asmbl_48912	none	blat.proc3829891.chain_459	1	STRG.8147.1,blat.proc3829891.chain_452,blat.proc3829891.chain_453,blat.proc3829891.chain_458	4
scaffold_18	ends_in_intron	11459388	11459388	-	asmbl_20163	none	blat.proc3829897.chain_2449	1	STRG.21667.1,blat.proc3829897.chain_2448	2
scaffold_1	spliced_intron	4587875	4587986	+	asmbl_1672,asmbl_1674	none	STRG.280.1,blat.proc3829871.chain_323,blat.proc3829871.chain_324	3	Trinity_GG_188_c0_g1_i2,blat.proc3829871.chain_325	2
scaffold_5	spliced_intron	14569065	14569231	-	asmbl_45978	none	STRG.6648.1,blat.proc3829889.chain_2698	2	blat.proc3829889.chain_2695	1
scaffold_12	starts_in_intron	7409967	7409967	-	asmbl_7710	none	STRG.14815.2,blat.proc3829893.chain_3204	2	STRG.14815.1,STRG.14815.3	2
scaffold_8	alt_donor	17454124	17454125	+	asmbl_52467	none	STRG.10660.1,Trinity_GG_5884_c0_g1_i2,blat.proc3829875.chain_3086	3	blat.proc3829875.chain_3087	1
scaffold_21	spliced_intron	4099856	4100642	+	asmbl_28521	none	STRG.23984.4	1	STRG.23984.3,blat.proc3829883.chain_1158	2
scaffold_19	spliced_intron	13007510	13007898	+	asmbl_22643,asmbl_22645,asmbl_22649	none	STRG.22609.2,Trinity_GG_12510_c0_g1_i1,Trinity_GG_12510_c0_g1_i10,Trinity_GG_12510_c0_g1_i11,blat.proc3829881.chain_3578,blat.proc3829881.chain_3583,blat.proc3829881.chain_3585	7	Trinity_GG_12510_c0_g1_i12,blat.proc3829881.chain_3580	2
scaffold_26	alt_donor	5404197	5404198	+	asmbl_35513	none	STRG.28230.1	1	blat.proc3829885.chain_1236	1
scaffold_4	retained_intron	105414	105497	-	asmbl_41045	none	blat.proc3829889.chain_225	1	Trinity_GG_19304_c1_g1_i4,blat.proc3829889.chain_226	2
scaffold_23	retained_intron	5861645	5861736	-	asmbl_31672	none	Trinity_GG_31529_c0_g1_i2,blat.proc3829899.chain_3061	2	STRG.25948.1,Trinity_GG_31529_c0_g1_i3,Trinity_GG_31529_c0_g1_i4,blat.proc3829899.chain_3062,blat.proc3829899.chain_3063	5
scaffold_7	skipped_exon	4513125	4515473	+	asmbl_50619	none	STRG.8814.2	1	STRG.8814.1,STRG.8814.3,blat.proc3829875.chain_1228,blat.proc3829875.chain_1229	4
scaffold_13	retained_intron	8112220	8112754	+	asmbl_11088	none	STRG.16075.2,Trinity_GG_8843_c0_g1_i1,blat.proc3829879.chain_820	3	STRG.16075.1,Trinity_GG_8843_c0_g2_i1	2
scaffold_446	skipped_exon	5026	6422	+	asmbl_43694	none	STRG.30303.2,blat.proc3829885.chain_3341	2	STRG.30303.1,blat.proc3829885.chain_3342	2
scaffold_10	retained_exon	4159534	4159648	-	asmbl_3183,asmbl_3185	none	STRG.12242.2,STRG.12242.3,blat.proc3829893.chain_687	3	STRG.12242.1,blat.proc3829893.chain_685	2
scaffold_6	starts_in_intron	16862298	16862298	-	asmbl_49100	none	STRG.8394.1	1	STRG.8394.2	1
scaffold_2	ends_in_intron	8297029	8297029	-	asmbl_23342	none	STRG.2113.2,Trinity_GG_18192_c0_g1_i1,blat.proc3829887.chain_2015	3	STRG.2113.1,blat.proc3829887.chain_2016	2
scaffold_4	retained_intron	4113774	4113870	-	asmbl_41227	none	blat.proc3829889.chain_374	1	blat.proc3829889.chain_377	1
scaffold_15	spliced_intron	13725067	13725143	+	asmbl_14598	none	STRG.18795.2	1	STRG.18795.1,Trinity_GG_10321_c0_g1_i3,blat.proc3829879.chain_3393	3
scaffold_14	alt_donor	1592551	1592552	-	asmbl_12874,asmbl_12877,asmbl_12878	none	STRG.16786.3,STRG.16786.4,STRG.16786.5,blat.proc3829895.chain_1443	4	STRG.16786.1,STRG.16786.2,blat.proc3829895.chain_1442,blat.proc3829895.chain_1444	4
scaffold_6	retained_intron	17524201	17525243	+	asmbl_47699,asmbl_47700,asmbl_47702	none	STRG.8451.1,STRG.8451.2,STRG.8451.3,Trinity_GG_4648_c0_g1_i1,Trinity_GG_4648_c1_g1_i4,blat.proc3829875.chain_841	6	STRG.8451.4,blat.proc3829875.chain_843	2
scaffold_1325	starts_in_intron	1400	1400	+	asmbl_11687	none	STRG.30565.4	1	STRG.30565.1,STRG.30565.2,STRG.30565.3,Trinity_GG_16889_c0_g1_i2,blat.proc3829885.chain_3503	5
scaffold_2	spliced_intron	14221018	14221150	-	asmbl_23597,asmbl_23599	none	blat.proc3829887.chain_2201,blat.proc3829887.chain_2203	2	STRG.2413.1,blat.proc3829887.chain_2199,blat.proc3829887.chain_2202	3
scaffold_12	alt_acceptor	7275053	7275054	-	asmbl_7692,asmbl_7693,asmbl_7694	none	STRG.14787.1,STRG.14787.2,Trinity_GG_25259_c0_g1_i1,Trinity_GG_25259_c0_g1_i2,Trinity_GG_25259_c0_g1_i3,blat.proc3829893.chain_3175,blat.proc3829893.chain_3176,blat.proc3829893.chain_3177	8	STRG.14787.3	1
scaffold_6	spliced_intron	13000458	13000538	-	asmbl_48792,asmbl_48793,asmbl_48794,asmbl_48797,asmbl_48799,asmbl_48800,asmbl_48801,asmbl_48804	none	STRG.8061.1,STRG.8061.2,STRG.8061.3,STRG.8061.4,STRG.8061.5,STRG.8061.6,STRG.8061.7,STRG.8061.8,Trinity_GG_21547_c0_g1_i11,Trinity_GG_21547_c0_g1_i2,Trinity_GG_21547_c0_g1_i7,blat.proc3829891.chain_260,blat.proc3829891.chain_262,blat.proc3829891.chain_264,blat.proc3829891.chain_267,blat.proc3829891.chain_269,blat.proc3829891.chain_270,blat.proc3829891.chain_271,blat.proc3829891.chain_273,blat.proc3829891.chain_275	20	Trinity_GG_21547_c0_g1_i10,Trinity_GG_21547_c0_g1_i16,Trinity_GG_21547_c0_g1_i18,blat.proc3829891.chain_259,blat.proc3829891.chain_263,blat.proc3829891.chain_265,blat.proc3829891.chain_268,blat.proc3829891.chain_272	8
scaffold_11	alt_donor	8597258	8597259	+	asmbl_5771	none	STRG.13863.2,blat.proc3829877.chain_2376	2	STRG.13863.1,STRG.13863.3,Trinity_GG_7654_c0_g1_i1,Trinity_GG_7654_c0_g1_i2,Trinity_GG_7654_c0_g1_i7,blat.proc3829877.chain_2375,blat.proc3829877.chain_2378,blat.proc3829877.chain_2379	8
scaffold_2	alt_donor	5200623	5200624	+	asmbl_24422	none	STRG.1940.2,Trinity_GG_1078_c0_g1_i2,blat.proc3829871.chain_1969	3	STRG.1940.1,Trinity_GG_1078_c0_g1_i3,Trinity_GG_1078_c0_g1_i5,blat.proc3829871.chain_1968,blat.proc3829871.chain_1970	5
scaffold_1	alt_donor	16687188	16687189	-	asmbl_1007	none	STRG.1172.1,blat.proc3829887.chain_1047	2	STRG.1172.2	1
scaffold_8	skipped_exon	738734	740013	+	asmbl_51654	none	blat.proc3829875.chain_2176	1	STRG.9720.1	1
scaffold_17	spliced_intron	4498	4819	+	asmbl_17659	none	STRG.19872.3	1	STRG.19872.1,STRG.19872.2,Trinity_GG_10890_c0_g1_i1,Trinity_GG_10890_c0_g1_i2,blat.proc3829881.chain_723,blat.proc3829881.chain_724	6
scaffold_8	alternate_exon	14570851	14571162	+	asmbl_52372	none	STRG.10535.3,blat.proc3829875.chain_3058	2	STRG.10535.1,blat.proc3829875.chain_3054,blat.proc3829875.chain_3057	3
scaffold_16	alt_acceptor	9360617	9360618	-	asmbl_16461	none	STRG.19520.2	1	STRG.19520.1,Trinity_GG_27970_c0_g1_i1,blat.proc3829897.chain_543	3
scaffold_6	alt_donor	17829917	17829918	+	asmbl_47724	none	STRG.8463.2,blat.proc3829875.chain_856	2	STRG.8463.1	1
scaffold_11	alt_donor	8102683	8102684	+	asmbl_5697,asmbl_5698	none	STRG.13811.3,STRG.13811.4	2	STRG.13811.1,STRG.13811.2,blat.proc3829877.chain_2300,blat.proc3829877.chain_2301,blat.proc3829877.chain_2303	5
scaffold_18	retained_intron	7864869	7866089	-	asmbl_20019	none	blat.proc3829897.chain_2328	1	blat.proc3829897.chain_2329	1
scaffold_12	spliced_intron	4784663	4785218	-	asmbl_7581,asmbl_7589	none	STRG.14646.1,blat.proc3829893.chain_3022,blat.proc3829893.chain_3023	3	STRG.14646.5,blat.proc3829893.chain_3021	2
scaffold_25	retained_intron	6325646	6326095	-	asmbl_34332,asmbl_34333	none	STRG.27499.3,blat.proc3829901.chain_861	2	STRG.27499.1,STRG.27499.2,blat.proc3829901.chain_862,blat.proc3829901.chain_864,blat.proc3829901.chain_865	5
scaffold_27	alt_donor	5927734	5927735	-	asmbl_36997	none	STRG.28980.2,blat.proc3829901.chain_2163	2	STRG.28980.1,blat.proc3829901.chain_2166	2
scaffold_23	retained_intron	5337942	5338313	-	asmbl_31627	none	Trinity_GG_31478_c0_g1_i4,blat.proc3829899.chain_2980	2	STRG.25890.1,STRG.25890.2,Trinity_GG_31478_c0_g1_i5,Trinity_GG_31478_c0_g1_i6,blat.proc3829899.chain_2981,blat.proc3829899.chain_2982	6
scaffold_5	alt_acceptor	17992938	17992939	+	asmbl_44860	none	STRG.6936.1,blat.proc3829873.chain_2991	2	STRG.6936.2	1
scaffold_1	skipped_exon	11175075	11175728	+	asmbl_2076	none	blat.proc3829871.chain_821	1	STRG.743.1,STRG.743.2,STRG.743.3,STRG.743.4,STRG.743.5,blat.proc3829871.chain_815,blat.proc3829871.chain_818,blat.proc3829871.chain_820,blat.proc3829871.chain_824,blat.proc3829871.chain_825	10
scaffold_26	alt_acceptor	3623044	3623045	+	asmbl_35334	none	STRG.28026.3	1	STRG.28026.2,blat.proc3829885.chain_998	2
scaffold_20	retained_intron	6975652	6975749	+	asmbl_25843	none	blat.proc3829883.chain_382	1	STRG.23248.2,blat.proc3829883.chain_383	2
scaffold_25	retained_intron	6525867	6525968	-	asmbl_34338	none	STRG.27518.1	1	blat.proc3829901.chain_847	1
scaffold_2727	spliced_intron	835	963	-	asmbl_37192	none	STRG.30758.1	1	STRG.30758.2	1
scaffold_14	alternate_exon	9998339	9998998	-	asmbl_13381	none	STRG.17356.1,blat.proc3829895.chain_2061	2	STRG.17356.2,Trinity_GG_26738_c0_g1_i1,blat.proc3829895.chain_2059	3
scaffold_15	alt_acceptor	15871124	15871125	+	asmbl_14787	none	STRG.18959.3	1	STRG.18959.1,STRG.18959.2,blat.proc3829879.chain_3576	3
scaffold_12	retained_intron	14962338	14962439	-	asmbl_8150,asmbl_8151	none	STRG.15272.1,Trinity_GG_25560_c0_g1_i3,blat.proc3829893.chain_3720,blat.proc3829893.chain_3721	4	STRG.15272.2,blat.proc3829893.chain_3719	2
scaffold_7	starts_in_intron	18768577	18768577	-	asmbl_50319	none	blat.proc3829891.chain_1878	1	blat.proc3829891.chain_1876,blat.proc3829891.chain_1877,blat.proc3829891.chain_1879	3
scaffold_22	alt_acceptor	10894917	10894918	-	asmbl_30400	none	STRG.25411.3	1	STRG.25411.1,STRG.25411.2,blat.proc3829899.chain_2451,blat.proc3829899.chain_2452	4
scaffold_11	alt_donor	3496428	3496429	+	asmbl_5400	none	STRG.13472.4	1	STRG.13472.2,STRG.13472.3,blat.proc3829877.chain_1902	3
scaffold_18	retained_intron	13150203	13150282	-	asmbl_20194	none	STRG.21746.2	1	STRG.21746.3	1
scaffold_22	alt_donor	4287916	4287917	-	asmbl_30008	none	blat.proc3829899.chain_1953	1	STRG.24837.3	1
scaffold_19	alt_acceptor	12974843	12974844	-	asmbl_21792	none	STRG.22606.1	1	STRG.22606.2,STRG.22606.3,STRG.22606.4,STRG.22606.5,Trinity_GG_29578_c0_g1_i1,Trinity_GG_29578_c0_g1_i2,Trinity_GG_29578_c0_g1_i6,Trinity_GG_29578_c0_g1_i8,blat.proc3829897.chain_3318,blat.proc3829897.chain_3319,blat.proc3829897.chain_3320,blat.proc3829897.chain_3324,blat.proc3829897.chain_3325	13
scaffold_21	spliced_intron	8008219	8008373	+	asmbl_28790,asmbl_28791,asmbl_28794,asmbl_28795,asmbl_28796	none	STRG.24326.1,STRG.24326.2,STRG.24326.3,blat.proc3829883.chain_1460,blat.proc3829883.chain_1461,blat.proc3829883.chain_1463,blat.proc3829883.chain_1465,blat.proc3829883.chain_1466	8	Trinity_GG_13472_c0_g1_i1,blat.proc3829883.chain_1462	2
scaffold_8	alternate_exon	8172234	8172760	+	asmbl_51988	none	STRG.10093.1,blat.proc3829875.chain_2576	2	STRG.10093.3	1
scaffold_19	alt_acceptor	6468857	6468858	+	asmbl_22218	none	STRG.22160.1,blat.proc3829881.chain_3036	2	STRG.22160.2,blat.proc3829881.chain_3037	2
scaffold_28	ends_in_intron	2263689	2263689	-	asmbl_37345,asmbl_37351	none	STRG.29380.4,blat.proc3829901.chain_2468	2	STRG.29380.1,STRG.29380.2,STRG.29380.3,blat.proc3829901.chain_2469,blat.proc3829901.chain_2470,blat.proc3829901.chain_2471	6
scaffold_26	starts_in_intron	5044652	5044652	+	asmbl_35478	none	blat.proc3829885.chain_1170	1	STRG.28206.1,blat.proc3829885.chain_1156,blat.proc3829885.chain_1157,blat.proc3829885.chain_1159,blat.proc3829885.chain_1163,blat.proc3829885.chain_1167,blat.proc3829885.chain_1168,blat.proc3829885.chain_1169	8
scaffold_18	alt_acceptor	1394508	1394509	-	asmbl_19650,asmbl_19651,asmbl_19653,asmbl_19655	none	STRG.21014.1,STRG.21014.2,Trinity_GG_28799_c0_g1_i5,blat.proc3829897.chain_1931,blat.proc3829897.chain_1932,blat.proc3829897.chain_1933	6	STRG.21014.3,blat.proc3829897.chain_1935,blat.proc3829897.chain_1937	3
scaffold_25	alt_donor	3677689	3677690	+	asmbl_33445	none	STRG.27295.2	1	STRG.27295.1,blat.proc3829885.chain_268	2
scaffold_13	alternate_exon	8801991	8805239	-	asmbl_9943,asmbl_9944,asmbl_9945,asmbl_9946	none	blat.proc3829895.chain_940,blat.proc3829895.chain_941,blat.proc3829895.chain_943,blat.proc3829895.chain_944	4	blat.proc3829895.chain_942	1
scaffold_5	alt_acceptor	14412031	14412032	+	asmbl_44596	none	STRG.6628.2,Trinity_GG_3605_c0_g1_i2,blat.proc3829873.chain_2735	3	STRG.6628.1,Trinity_GG_3605_c0_g1_i1,blat.proc3829873.chain_2736	3
scaffold_9	spliced_intron	9644933	9645015	+	asmbl_54200	none	STRG.11322.1,Trinity_GG_6310_c0_g1_i1,blat.proc3829877.chain_81	3	STRG.11322.2	1
scaffold_15	alternate_exon	12064304	12064531	+	asmbl_14467	none	STRG.18644.1,blat.proc3829879.chain_3230	2	STRG.18644.2,blat.proc3829879.chain_3229	2
scaffold_22	retained_intron	31144	31291	+	asmbl_29095	none	STRG.24649.1,blat.proc3829883.chain_1668	2	STRG.24649.2,blat.proc3829883.chain_1669	2
scaffold_9	starts_in_intron	6815309	6815309	+	asmbl_54089	none	blat.proc3829875.chain_3685	1	STRG.11180.1,Trinity_GG_6239_c0_g1_i1,blat.proc3829875.chain_3684	3
scaffold_13	retained_intron	7717856	7718018	-	asmbl_9866	none	blat.proc3829895.chain_751	1	STRG.16043.2,blat.proc3829895.chain_749,blat.proc3829895.chain_750	3
scaffold_13	alt_acceptor	366562	366563	-	asmbl_9275	none	STRG.15426.1,Trinity_GG_25666_c0_g1_i11,blat.proc3829895.chain_155	3	STRG.15426.5	1
scaffold_24	ends_in_intron	5938245	5938245	+	asmbl_32269	none	blat.proc3829883.chain_3555	1	STRG.26645.1,blat.proc3829883.chain_3535,blat.proc3829883.chain_3537,blat.proc3829883.chain_3542,blat.proc3829883.chain_3543,blat.proc3829883.chain_3545,blat.proc3829883.chain_3547,blat.proc3829883.chain_3548	8
scaffold_14	retained_exon	2375413	2375442	-	asmbl_12918,asmbl_12919,asmbl_12920,asmbl_12923	none	STRG.16839.1,STRG.16839.3,STRG.16839.4,blat.proc3829895.chain_1580	4	STRG.16839.5,blat.proc3829895.chain_1581	2
scaffold_27	spliced_intron	6258393	6258777	+	asmbl_36351,asmbl_36353	none	STRG.28995.3,blat.proc3829885.chain_2095	2	STRG.28995.1,blat.proc3829885.chain_2098	2
scaffold_2	spliced_intron	4836305	4836534	-	asmbl_23129	none	STRG.1904.1	1	STRG.1904.2	1
scaffold_8	spliced_intron	16398423	16398835	-	asmbl_53389,asmbl_53390,asmbl_53394,asmbl_53395,asmbl_53396,asmbl_53399	none	STRG.10619.1,STRG.10619.2,blat.proc3829891.chain_2683,blat.proc3829891.chain_2684,blat.proc3829891.chain_2685,blat.proc3829891.chain_2686,blat.proc3829891.chain_2687,blat.proc3829891.chain_2688	8	blat.proc3829891.chain_2689,blat.proc3829891.chain_2691	2
scaffold_28	starts_in_intron	2198684	2198684	+	asmbl_38039,asmbl_38041	none	STRG.29368.4,Trinity_GG_16268_c1_g1_i2,blat.proc3829885.chain_2449	3	STRG.29368.3,Trinity_GG_16268_c1_g1_i1,blat.proc3829885.chain_2448	3
scaffold_14	retained_intron	3388662	3389749	+	asmbl_11915	none	Trinity_GG_9264_c0_g1_i2,blat.proc3829879.chain_1557	2	STRG.16914.1,blat.proc3829879.chain_1558	2
scaffold_27	retained_intron	315477	315621	-	asmbl_36613,asmbl_36617	none	STRG.28538.1,blat.proc3829901.chain_1673	2	STRG.28538.2,STRG.28538.3	2
scaffold_6	alt_acceptor	12520946	12520947	-	asmbl_48750,asmbl_48752	none	STRG.8002.4,blat.proc3829891.chain_301	2	STRG.8002.1,STRG.8002.2,blat.proc3829891.chain_300,blat.proc3829891.chain_302	4
scaffold_22	alt_acceptor	745102	745103	-	asmbl_29891	none	STRG.24710.3,blat.proc3829899.chain_1764	2	STRG.24710.2	1
scaffold_21	spliced_intron	10987237	10987279	+	asmbl_28917	none	STRG.24568.1,blat.proc3829883.chain_1589	2	blat.proc3829883.chain_1590,blat.proc3829883.chain_1591	2
scaffold_1	alternate_exon	19698339	19698434	-	asmbl_1150,asmbl_1151	none	STRG.1356.1,blat.proc3829887.chain_1248,blat.proc3829887.chain_1249	3	STRG.1356.2	1
scaffold_28	spliced_intron	58885	58965	-	asmbl_37205,asmbl_37208,asmbl_37210	none	STRG.29222.1,Trinity_GG_33360_c0_g1_i2,blat.proc3829901.chain_2317,blat.proc3829901.chain_2318,blat.proc3829901.chain_2319	5	Trinity_GG_33360_c0_g1_i3,blat.proc3829901.chain_2316	2
scaffold_8	ends_in_intron	3536611	3536611	-	asmbl_52732	none	blat.proc3829891.chain_2017	1	STRG.9841.1	1
scaffold_13	skipped_exon	11615251	11616123	+	asmbl_11283	none	STRG.16298.2,blat.proc3829879.chain_1046	2	STRG.16298.1,blat.proc3829879.chain_1047	2
scaffold_25	retained_intron	9090794	9090907	+	asmbl_33771	none	STRG.27705.1,blat.proc3829885.chain_743	2	STRG.27705.2,blat.proc3829885.chain_742	2
scaffold_12	starts_in_intron	2334412	2334412	+	asmbl_8452	none	blat.proc3829877.chain_2960	1	STRG.14492.1	1
scaffold_23	retained_intron	5340412	5340615	-	asmbl_31628,asmbl_31630,asmbl_31631	none	STRG.25890.2,Trinity_GG_31478_c0_g1_i2,Trinity_GG_31478_c0_g1_i5,blat.proc3829899.chain_2978,blat.proc3829899.chain_2982	5	STRG.25890.1,STRG.25890.3,Trinity_GG_31478_c0_g1_i3,Trinity_GG_31478_c0_g1_i4,Trinity_GG_31478_c0_g1_i6,blat.proc3829899.chain_2977,blat.proc3829899.chain_2980,blat.proc3829899.chain_2981	8
scaffold_11	retained_intron	3110813	3110881	-	asmbl_6505	none	STRG.13430.1,blat.proc3829893.chain_1914	2	STRG.13430.2,blat.proc3829893.chain_1912	2
scaffold_14	alt_donor	15693886	15693887	-	asmbl_13721	none	STRG.17796.2	1	STRG.17796.3,blat.proc3829895.chain_2522	2
scaffold_25	ends_in_intron	9040545	9040545	-	asmbl_34446	none	Trinity_GG_32536_c0_g1_i2,blat.proc3829901.chain_1001	2	STRG.27701.1,Trinity_GG_32536_c0_g1_i1,blat.proc3829901.chain_1000	3
scaffold_19	starts_in_intron	1038502	1038502	+	asmbl_22032	none	Trinity_GG_12096_c0_g1_i3,blat.proc3829881.chain_2840	2	STRG.21879.1	1
scaffold_16	alt_acceptor	409427	409428	-	asmbl_16033,asmbl_16034	none	STRG.19020.1,blat.proc3829897.chain_76,blat.proc3829897.chain_77	3	blat.proc3829897.chain_78	1
scaffold_23	starts_in_intron	6332590	6332590	+	asmbl_30911	none	blat.proc3829883.chain_2836	1	STRG.25966.3,blat.proc3829883.chain_2835,blat.proc3829883.chain_2837	3
scaffold_18	spliced_intron	281385	282126	+	asmbl_20313	none	STRG.20973.4,blat.proc3829881.chain_1823	2	STRG.20973.2,Trinity_GG_11537_c1_g1_i1,blat.proc3829881.chain_1824	3
scaffold_10	alternate_exon	4051047	4052483	+	asmbl_4382	none	STRG.12236.2,Trinity_GG_6793_c0_g1_i2,blat.proc3829877.chain_908	3	Trinity_GG_6793_c1_g1_i3,blat.proc3829877.chain_910	2
scaffold_1	alt_donor	5765927	5765928	+	asmbl_1782	none	STRG.384.2,Trinity_GG_252_c1_g1_i1,blat.proc3829871.chain_448	3	STRG.384.1,blat.proc3829871.chain_447	2
scaffold_13	retained_intron	3747652	3747803	+	asmbl_10722	none	Trinity_GG_8626_c0_g1_i4,blat.proc3829879.chain_382	2	STRG.15683.1,STRG.15683.2,Trinity_GG_8626_c0_g1_i1,blat.proc3829879.chain_381	4
scaffold_27	alternate_exon	1779721	1779870	-	asmbl_36738	none	STRG.28644.2,blat.proc3829901.chain_1779	2	STRG.28644.1,blat.proc3829901.chain_1778	2
scaffold_7	retained_intron	13205487	13205684	+	asmbl_51197,asmbl_51199	none	STRG.9419.3,blat.proc3829875.chain_1855,blat.proc3829875.chain_1856	3	STRG.9419.1,STRG.9419.2,blat.proc3829875.chain_1851,blat.proc3829875.chain_1853	4
scaffold_18	spliced_intron	7631535	7631669	-	asmbl_19994,asmbl_19995	none	STRG.21453.2,blat.proc3829897.chain_2310,blat.proc3829897.chain_2312,blat.proc3829897.chain_2314	4	STRG.21453.1,STRG.21453.5,blat.proc3829897.chain_2308,blat.proc3829897.chain_2309	4
scaffold_6	alt_donor	18834837	18834838	+	asmbl_47800	none	STRG.8547.2	1	STRG.8547.1,STRG.8547.3,blat.proc3829875.chain_887,blat.proc3829875.chain_888,blat.proc3829875.chain_890,blat.proc3829875.chain_891	6
scaffold_7	alt_donor	3957306	3957307	-	asmbl_49651,asmbl_49654	none	STRG.8779.1,STRG.8779.2,blat.proc3829891.chain_1076	3	STRG.8779.3,blat.proc3829891.chain_1077	2
scaffold_18	starts_in_intron	4756576	4756576	+	asmbl_20584	none	Trinity_GG_11703_c0_g1_i1,blat.proc3829881.chain_2142	2	STRG.21258.1,blat.proc3829881.chain_2141	2
scaffold_3	spliced_intron	8165751	8166312	-	asmbl_38967,asmbl_38974,asmbl_38975	none	blat.proc3829887.chain_3128,blat.proc3829887.chain_3134,blat.proc3829887.chain_3136	3	Trinity_GG_18833_c11_g1_i1,blat.proc3829887.chain_3151	2
scaffold_2	retained_exon	483027	483134	-	asmbl_22829,asmbl_22833	none	STRG.1533.1,STRG.1533.2,blat.proc3829887.chain_1416	3	STRG.1533.3	1
scaffold_3	alt_acceptor	19805362	19805363	+	asmbl_40731	none	STRG.4094.3	1	STRG.4094.1,STRG.4094.2,blat.proc3829873.chain_434,blat.proc3829873.chain_436	4
scaffold_25	skipped_exon	2689435	2690331	+	asmbl_33400	none	STRG.27213.1	1	STRG.27213.2,blat.proc3829885.chain_261	2
scaffold_20	alt_acceptor	4374679	4374680	+	asmbl_25731	none	STRG.23107.1,blat.proc3829883.chain_248	2	STRG.23107.2	1
scaffold_14	starts_in_intron	1591562	1591562	-	asmbl_12876	none	blat.proc3829895.chain_1441	1	STRG.16786.1,STRG.16786.2,STRG.16786.3,STRG.16786.4,STRG.16786.5,blat.proc3829895.chain_1442,blat.proc3829895.chain_1443,blat.proc3829895.chain_1444	8
scaffold_28	skipped_exon	3839816	3840769	+	asmbl_38187	none	STRG.29557.1,blat.proc3829885.chain_2697	2	STRG.29557.2,blat.proc3829885.chain_2700	2
scaffold_1	retained_exon	45447	45506	-	asmbl_3	none	STRG.19.3	1	STRG.19.1,blat.proc3829885.chain_3732	2
scaffold_26	starts_in_intron	4469742	4469742	+	asmbl_35440	none	Trinity_GG_15544_c2_g1_i1,blat.proc3829885.chain_1128	2	STRG.28139.1,STRG.28139.2,blat.proc3829885.chain_1127	3
scaffold_9	ends_in_intron	5792982	5792982	-	asmbl_54999	none	blat.proc3829891.chain_3233	1	STRG.11137.1,blat.proc3829891.chain_3232	2
scaffold_14	alt_acceptor	7495624	7495625	+	asmbl_12145	none	STRG.17177.4	1	STRG.17177.2,Trinity_GG_9413_c1_g1_i2,blat.proc3829879.chain_1836	3
scaffold_7	alternate_exon	2485107	2485150	+	asmbl_50526	none	Trinity_GG_4744_c1_g1_i3,blat.proc3829875.chain_1064	2	STRG.8671.1,STRG.8671.2,blat.proc3829875.chain_1063	3
scaffold_1	retained_intron	6328992	6329103	+	asmbl_1823	none	STRG.428.2	1	STRG.428.1,STRG.428.3,Trinity_GG_267_c0_g1_i2,blat.proc3829871.chain_473,blat.proc3829871.chain_474	5
scaffold_2	ends_in_intron	10880331	10880331	+	asmbl_24772	none	Trinity_GG_1275_c0_g1_i3,blat.proc3829871.chain_2378	2	STRG.2242.1,STRG.2242.2,Trinity_GG_1275_c0_g1_i1,Trinity_GG_1275_c0_g1_i6,blat.proc3829871.chain_2374,blat.proc3829871.chain_2376,blat.proc3829871.chain_2377	7
scaffold_26	retained_intron	7774100	7774213	+	asmbl_35671	none	Trinity_GG_15671_c0_g1_i6,blat.proc3829885.chain_1357	2	blat.proc3829885.chain_1359	1
scaffold_15	alt_acceptor	15233141	15233142	-	asmbl_15779	none	STRG.18900.1,blat.proc3829895.chain_3677	2	STRG.18900.3	1
scaffold_1	spliced_intron	12334369	12334829	-	asmbl_715,asmbl_719,asmbl_720,asmbl_723	none	STRG.843.1,blat.proc3829887.chain_734,blat.proc3829887.chain_744,blat.proc3829887.chain_745	4	STRG.843.2,blat.proc3829887.chain_737,blat.proc3829887.chain_741,blat.proc3829887.chain_743,blat.proc3829887.chain_746	5
scaffold_11	retained_intron	14587104	14588383	+	asmbl_6077,asmbl_6079	none	STRG.14246.3,blat.proc3829877.chain_2755	2	STRG.14246.1,blat.proc3829877.chain_2756	2
scaffold_14	spliced_intron	5597207	5597301	+	asmbl_12008,asmbl_12009	none	STRG.17026.1,blat.proc3829879.chain_1781,blat.proc3829879.chain_1782	3	Trinity_GG_9387_c1_g1_i5,blat.proc3829879.chain_1783	2
scaffold_10	alt_donor	11079734	11079735	+	asmbl_4721	none	STRG.12768.2,Trinity_GG_7034_c0_g1_i1,blat.proc3829877.chain_1327	3	STRG.12768.1,blat.proc3829877.chain_1328	2
scaffold_23	alt_donor	5579027	5579028	+	asmbl_30875,asmbl_30877	none	STRG.25909.1,STRG.25909.3,blat.proc3829883.chain_2799,blat.proc3829883.chain_2801	4	STRG.25909.2,blat.proc3829883.chain_2798,blat.proc3829883.chain_2802,blat.proc3829883.chain_2803	4
scaffold_27	skipped_exon	2815397	2816799	+	asmbl_36074,asmbl_36080,asmbl_36081,asmbl_36082	none	STRG.28742.1,STRG.28742.3,STRG.28742.4,blat.proc3829885.chain_1799,blat.proc3829885.chain_1803	5	STRG.28742.2,blat.proc3829885.chain_1801,blat.proc3829885.chain_1802	3
scaffold_1	alt_donor	17918482	17918483	+	asmbl_2526	none	STRG.1258.2	1	STRG.1258.3	1
scaffold_10	spliced_intron	6075638	6075745	-	asmbl_3342,asmbl_3345,asmbl_3350	none	STRG.12437.5,blat.proc3829893.chain_921,blat.proc3829893.chain_922	3	STRG.12437.1,STRG.12437.2,STRG.12437.3,blat.proc3829893.chain_918,blat.proc3829893.chain_919,blat.proc3829893.chain_923,blat.proc3829893.chain_924	7
scaffold_4	retained_intron	5444968	5445072	-	asmbl_41341	none	STRG.4440.1,blat.proc3829889.chain_570	2	STRG.4440.2,blat.proc3829889.chain_569	2
scaffold_10	alt_donor	15481387	15481388	-	asmbl_3887	none	STRG.13055.1,blat.proc3829893.chain_1559	2	STRG.13055.2	1
scaffold_11	spliced_intron	8192814	8192980	-	asmbl_6832	none	STRG.13814.1,Trinity_GG_24748_c0_g1_i3,blat.proc3829893.chain_2274	3	Trinity_GG_24748_c0_g1_i2,blat.proc3829893.chain_2273	2
scaffold_8	alt_donor	12411180	12411181	+	asmbl_52301	none	STRG.10415.2,Trinity_GG_5808_c0_g1_i2,blat.proc3829875.chain_2937	3	STRG.10415.1	1
scaffold_27	starts_in_intron	1097119	1097119	+	asmbl_35952	none	Trinity_GG_15830_c0_g1_i2,blat.proc3829885.chain_1639	2	STRG.28590.1,blat.proc3829885.chain_1640,blat.proc3829885.chain_1641	3
scaffold_7	alternate_exon	11833334	11833358	-	asmbl_49980	none	STRG.9281.2	1	STRG.9281.1,Trinity_GG_22250_c1_g1_i2,blat.proc3829891.chain_1525	3
scaffold_5	starts_in_intron	3591944	3591944	-	asmbl_45313	none	STRG.5822.1	1	STRG.5822.5	1
scaffold_5	spliced_intron	15044032	15044118	-	asmbl_46020,asmbl_46021	none	STRG.6692.2,STRG.6692.9	2	STRG.6692.4	1
scaffold_28	spliced_intron	5735192	5735278	-	asmbl_37642	none	STRG.29686.1,Trinity_GG_33646_c0_g1_i1,blat.proc3829901.chain_2793	3	STRG.29686.2,Trinity_GG_33646_c0_g1_i2,blat.proc3829901.chain_2794	3
scaffold_15	starts_in_intron	4156412	4156412	-	asmbl_15143	none	blat.proc3829895.chain_2884	1	STRG.18145.1,Trinity_GG_27221_c0_g1_i2,blat.proc3829895.chain_2886	3
scaffold_18	retained_intron	8862547	8864199	-	asmbl_20063	none	Trinity_GG_29045_c0_g1_i9,blat.proc3829897.chain_2355	2	Trinity_GG_29045_c0_g1_i17,blat.proc3829897.chain_2361	2
scaffold_24	spliced_intron	5945203	5947592	+	asmbl_32262,asmbl_32270,asmbl_32274,asmbl_32275,asmbl_32276,asmbl_32278,asmbl_32279,asmbl_32280,asmbl_32281,asmbl_32282	none	STRG.26645.1,blat.proc3829883.chain_3537,blat.proc3829883.chain_3539,blat.proc3829883.chain_3542,blat.proc3829883.chain_3543,blat.proc3829883.chain_3544,blat.proc3829883.chain_3545,blat.proc3829883.chain_3547,blat.proc3829883.chain_3548,blat.proc3829883.chain_3549	10	blat.proc3829883.chain_3535	1
scaffold_15	retained_intron	389347	389455	+	asmbl_13910,asmbl_13914	none	STRG.17879.3,Trinity_GG_9836_c0_g1_i2,blat.proc3829879.chain_2572,blat.proc3829879.chain_2573	4	STRG.17879.1,STRG.17879.2,blat.proc3829879.chain_2569,blat.proc3829879.chain_2571,blat.proc3829879.chain_2574,blat.proc3829879.chain_2575	6
scaffold_22	retained_intron	6127007	6127298	+	asmbl_29399	none	blat.proc3829883.chain_1999	1	STRG.24955.3,STRG.24955.4,STRG.24955.5,blat.proc3829883.chain_1996,blat.proc3829883.chain_1997,blat.proc3829883.chain_1998,blat.proc3829883.chain_2002	7
scaffold_26	starts_in_intron	4816778	4816778	-	asmbl_34873	none	STRG.28181.2	1	STRG.28181.1,blat.proc3829901.chain_1375,blat.proc3829901.chain_1376	3
scaffold_6	retained_intron	73979	74164	-	asmbl_47962,asmbl_47964,asmbl_47965	none	STRG.7058.1,STRG.7058.2,STRG.7058.3	3	STRG.7058.4	1
scaffold_25	spliced_intron	8705312	8706427	+	asmbl_33746	none	STRG.27679.2,blat.proc3829885.chain_694	2	Trinity_GG_15273_c0_g1_i8,blat.proc3829885.chain_691,blat.proc3829885.chain_697,blat.proc3829885.chain_702	4
scaffold_6	retained_exon	299073	299109	+	asmbl_46603	none	STRG.7082.1	1	STRG.7082.2,Trinity_GG_3916_c0_g1_i8,blat.proc3829873.chain_3249	3
scaffold_15	retained_intron	12537084	12537192	-	asmbl_15600	none	blat.proc3829895.chain_3444	1	STRG.18699.3,blat.proc3829895.chain_3446	2
scaffold_8	spliced_intron	4852903	4853082	+	asmbl_51845,asmbl_51846,asmbl_51848,asmbl_51849	none	STRG.9942.1,STRG.9942.2,Trinity_GG_5535_c0_g1_i1,blat.proc3829875.chain_2451,blat.proc3829875.chain_2454,blat.proc3829875.chain_2455,blat.proc3829875.chain_2456	7	Trinity_GG_5535_c0_g1_i4,blat.proc3829875.chain_2450	2
scaffold_22	starts_in_intron	8286556	8286556	-	asmbl_30241	none	blat.proc3829899.chain_2206	1	STRG.25169.1	1
scaffold_10	starts_in_intron	13782271	13782271	+	asmbl_4889	none	Trinity_GG_7140_c2_g1_i1,blat.proc3829877.chain_1528	2	STRG.12969.1,STRG.12969.2,STRG.12969.3	3
scaffold_16	starts_in_intron	433451	433451	-	asmbl_16054	none	blat.proc3829897.chain_27	1	STRG.19039.1,blat.proc3829897.chain_17,blat.proc3829897.chain_18,blat.proc3829897.chain_19,blat.proc3829897.chain_20,blat.proc3829897.chain_21,blat.proc3829897.chain_23,blat.proc3829897.chain_24	8
scaffold_15	retained_intron	2718469	2718646	-	asmbl_15041	none	STRG.18045.2,Trinity_GG_27160_c0_g1_i2,blat.proc3829895.chain_2787	3	STRG.18045.1,blat.proc3829895.chain_2786	2
scaffold_1	retained_intron	8990419	8991134	-	asmbl_514	none	STRG.596.1,blat.proc3829887.chain_495	2	blat.proc3829887.chain_494	1
scaffold_1	retained_exon	18763419	18763491	+	asmbl_2557	none	STRG.1310.3	1	STRG.1310.1,STRG.1310.2	2
scaffold_13	spliced_intron	517905	520155	+	asmbl_10454	none	STRG.15434.3,Trinity_GG_8491_c0_g1_i1,blat.proc3829879.chain_110	3	STRG.15434.1,blat.proc3829879.chain_114	2
scaffold_11	skipped_exon	8079062	8079347	-	asmbl_6804,asmbl_6809,asmbl_6812,asmbl_6814,asmbl_6815,asmbl_6816	none	STRG.13802.4,STRG.13802.5,Trinity_GG_24711_c0_g1_i13,Trinity_GG_24711_c0_g1_i17,Trinity_GG_24711_c0_g1_i18,blat.proc3829893.chain_2197,blat.proc3829893.chain_2204,blat.proc3829893.chain_2206,blat.proc3829893.chain_2208	9	STRG.13802.2,STRG.13802.3,Trinity_GG_24711_c0_g1_i3,Trinity_GG_24711_c0_g1_i4,Trinity_GG_24711_c0_g1_i7,Trinity_GG_24711_c0_g1_i8,blat.proc3829893.chain_2198,blat.proc3829893.chain_2202,blat.proc3829893.chain_2205,blat.proc3829893.chain_2209,blat.proc3829893.chain_2210,blat.proc3829893.chain_2211	12
scaffold_25	alt_donor	8700442	8700443	-	asmbl_34437	none	STRG.27678.5	1	STRG.27678.2,STRG.27678.3,blat.proc3829901.chain_953,blat.proc3829901.chain_954,blat.proc3829901.chain_957,blat.proc3829901.chain_960	6
scaffold_6	alt_acceptor	9152070	9152071	-	asmbl_48540,asmbl_48541	none	STRG.7783.1,blat.proc3829891.chain_44,blat.proc3829891.chain_45	3	STRG.7783.2,STRG.7783.3	2
scaffold_114	retained_exon	12561	12662	+	asmbl_7381	none	STRG.30124.2	1	STRG.30124.1	1
scaffold_21	alt_acceptor	8278609	8278610	+	asmbl_28819,asmbl_28821	none	STRG.24353.1,STRG.24353.3	2	STRG.24353.2,blat.proc3829883.chain_1472	2
scaffold_20	ends_in_intron	5546891	5546891	-	asmbl_26693	none	STRG.23165.2	1	blat.proc3829899.chain_207	1
scaffold_13	retained_exon	2339877	2340134	+	asmbl_10581,asmbl_10583,asmbl_10586	none	STRG.15543.11,blat.proc3829879.chain_154,blat.proc3829879.chain_157	3	blat.proc3829879.chain_156,blat.proc3829879.chain_163	2
scaffold_2	alt_donor	5073824	5073825	-	asmbl_23149	none	STRG.1922.2,blat.proc3829887.chain_1822	2	STRG.1922.4	1
scaffold_6	ends_in_intron	13192070	13192070	+	asmbl_47424	none	STRG.8068.3	1	STRG.8068.1,blat.proc3829875.chain_428,blat.proc3829875.chain_429,blat.proc3829875.chain_430,blat.proc3829875.chain_432	5
scaffold_7	alt_acceptor	3955085	3955086	-	asmbl_49646,asmbl_49647	none	blat.proc3829891.chain_1089,blat.proc3829891.chain_1090	2	STRG.8791.1,STRG.8791.2,blat.proc3829891.chain_1086,blat.proc3829891.chain_1088,blat.proc3829891.chain_1091,blat.proc3829891.chain_1092,blat.proc3829891.chain_1093	7
scaffold_8	ends_in_intron	17495949	17495949	+	asmbl_52473	none	Trinity_GG_5917_c0_g2_i1,blat.proc3829875.chain_3159	2	STRG.10668.1,STRG.10668.3,STRG.10668.5,blat.proc3829875.chain_3152,blat.proc3829875.chain_3153,blat.proc3829875.chain_3156,blat.proc3829875.chain_3157,blat.proc3829875.chain_3158	8
scaffold_15	retained_intron	12748652	12748931	+	asmbl_14543	none	blat.proc3829879.chain_3352	1	STRG.18731.1,STRG.18731.2,STRG.18731.3,STRG.18731.4,blat.proc3829879.chain_3350,blat.proc3829879.chain_3351,blat.proc3829879.chain_3353	7
scaffold_15	skipped_exon	12390490	12391553	-	asmbl_15591,asmbl_15592	none	STRG.18686.2,STRG.18686.3	2	STRG.18686.4	1
scaffold_2	alternate_exon	7469728	7470457	-	asmbl_23285	none	STRG.2075.2	1	Trinity_GG_18127_c0_g1_i8,blat.proc3829887.chain_1895	2
scaffold_1	retained_intron	1349041	1349123	+	asmbl_1474	none	STRG.77.2	1	STRG.77.1,Trinity_GG_58_c0_g1_i2,blat.proc3829871.chain_106	3
scaffold_20	starts_in_intron	9446438	9446438	-	asmbl_26960	none	STRG.23472.1,blat.proc3829899.chain_494,blat.proc3829899.chain_496	3	STRG.23472.2,blat.proc3829899.chain_495	2
scaffold_26	retained_intron	9315862	9315995	+	asmbl_35742,asmbl_35743,asmbl_35745	none	Trinity_GG_15765_c0_g1_i2,blat.proc3829885.chain_1515,blat.proc3829885.chain_1517,blat.proc3829885.chain_1518	4	STRG.28479.1,STRG.28479.2,STRG.28479.3,blat.proc3829885.chain_1519,blat.proc3829885.chain_1520	5
scaffold_25	alternate_exon	7320859	7322301	-	asmbl_34370	none	STRG.27566.2	1	blat.proc3829885.chain_601	1
scaffold_14	alt_acceptor	15565929	15565930	+	asmbl_12606	none	blat.proc3829879.chain_2468	1	STRG.17784.2,STRG.17784.3	2
scaffold_17	spliced_intron	8951018	8951264	+	asmbl_18175	none	STRG.20504.1,blat.proc3829881.chain_1274	2	STRG.20504.2,blat.proc3829881.chain_1273	2
scaffold_24	ends_in_intron	3776984	3776984	-	asmbl_32842	none	blat.proc3829899.chain_3605	1	STRG.26540.1,blat.proc3829899.chain_3604	2
scaffold_19	alternate_exon	3670631	3672194	-	asmbl_21324	none	STRG.22034.3,Trinity_GG_29269_c0_g1_i2,blat.proc3829897.chain_2743	3	STRG.22034.2,Trinity_GG_29269_c0_g1_i5,blat.proc3829897.chain_2739	3
scaffold_9	spliced_intron	5220781	5220889	+	asmbl_53985,asmbl_53986,asmbl_53988	none	STRG.11094.1,STRG.11094.2,STRG.11094.3,blat.proc3829875.chain_3503	4	Trinity_GG_6143_c0_g1_i4,blat.proc3829875.chain_3502	2
scaffold_11	retained_intron	13092994	13093788	+	asmbl_5997,asmbl_5998,asmbl_6002,asmbl_6003,asmbl_6005,asmbl_6008	none	STRG.14176.2,STRG.14176.4,blat.proc3829877.chain_2670,blat.proc3829877.chain_2673,blat.proc3829877.chain_2676,blat.proc3829877.chain_2677	6	blat.proc3829877.chain_2669,blat.proc3829877.chain_2675	2
scaffold_7	alt_acceptor	13960866	13960867	+	asmbl_51274,asmbl_51275	none	STRG.9485.1,STRG.9485.2,Trinity_GG_5272_c0_g1_i1,blat.proc3829875.chain_1951	4	blat.proc3829875.chain_1953	1
scaffold_6	alt_acceptor	16607491	16607492	+	asmbl_47647	none	STRG.8378.1	1	STRG.8378.3	1
scaffold_19	alt_acceptor	8753724	8753725	+	asmbl_22353	none	blat.proc3829881.chain_3258	1	STRG.22316.1,blat.proc3829881.chain_3257	2
scaffold_25	alt_acceptor	8707660	8707661	+	asmbl_33747,asmbl_33749	none	STRG.27679.1,Trinity_GG_15273_c0_g1_i6,blat.proc3829885.chain_700,blat.proc3829885.chain_701	4	STRG.27679.2,blat.proc3829885.chain_694,blat.proc3829885.chain_699	3
scaffold_20	retained_exon	10384459	10384549	+	asmbl_26113,asmbl_26115	none	STRG.23569.3,STRG.23569.5	2	STRG.23569.1,STRG.23569.2,Trinity_GG_12979_c0_g1_i2,Trinity_GG_12979_c0_g1_i5,Trinity_GG_12979_c0_g1_i6,blat.proc3829883.chain_591,blat.proc3829883.chain_592,blat.proc3829883.chain_594	8
scaffold_17	alternate_exon	10054657	10054785	-	asmbl_19281	none	STRG.20610.2	1	STRG.20610.1,blat.proc3829897.chain_1578	2
scaffold_5	spliced_intron	4865673	4866834	+	asmbl_43976	none	STRG.5938.1,blat.proc3829873.chain_2137	2	STRG.5938.3,Trinity_GG_3273_c0_g1_i2,Trinity_GG_3273_c0_g1_i4,blat.proc3829873.chain_2134,blat.proc3829873.chain_2135	5
scaffold_18	alternate_exon	13438982	13439245	+	asmbl_21036	none	STRG.21775.2,Trinity_GG_12046_c2_g1_i1,blat.proc3829881.chain_2740	3	STRG.21775.1	1
scaffold_9	starts_in_intron	3379607	3379607	-	asmbl_54862	none	blat.proc3829891.chain_3128	1	STRG.10938.1,Trinity_GG_23094_c0_g2_i1,blat.proc3829891.chain_3129	3
scaffold_10	alternate_exon	17159054	17161111	-	asmbl_3937	none	STRG.13151.1,blat.proc3829893.chain_1644	2	STRG.13151.2,blat.proc3829893.chain_1643	2
scaffold_16	alt_donor	6186097	6186098	+	asmbl_17081	none	STRG.19341.2	1	STRG.19341.1,Trinity_GG_10583_c0_g1_i1,blat.proc3829881.chain_195	3
scaffold_5	retained_exon	12532513	12533674	-	asmbl_45843,asmbl_45844	none	STRG.6491.1,STRG.6491.3	2	STRG.6491.2	1
scaffold_14	retained_intron	13223723	13223984	+	asmbl_12449,asmbl_12452,asmbl_12453	none	STRG.17600.2,STRG.17600.5,STRG.17600.6,blat.proc3829879.chain_2201	4	STRG.17600.1,STRG.17600.3,STRG.17600.4,blat.proc3829879.chain_2202,blat.proc3829879.chain_2203,blat.proc3829879.chain_2205	6
scaffold_2	alt_donor	8278547	8278548	+	asmbl_24656	none	STRG.2112.1,blat.proc3829871.chain_2125	2	STRG.2112.2,blat.proc3829871.chain_2126	2
scaffold_16	alt_donor	11297097	11297098	+	asmbl_17376	none	STRG.19649.3	1	STRG.19649.1,STRG.19649.2,blat.proc3829881.chain_537	3
scaffold_15	skipped_exon	5742852	5745664	-	asmbl_15243,asmbl_15244	none	STRG.18248.3,STRG.18248.4	2	STRG.18248.1,STRG.18248.2	2
scaffold_19	alt_donor	3560904	3560905	+	asmbl_22128	none	STRG.22033.1,Trinity_GG_12191_c2_g1_i1,blat.proc3829881.chain_2998	3	STRG.22033.2	1
scaffold_3	retained_intron	13833535	13833619	+	asmbl_40419	none	STRG.3723.1,blat.proc3829873.chain_125	2	blat.proc3829873.chain_124	1
scaffold_26	starts_in_intron	5035098	5035098	+	asmbl_35467,asmbl_35483	none	blat.proc3829885.chain_1160,blat.proc3829885.chain_1161	2	STRG.28206.1,STRG.28206.2,STRG.28206.3,blat.proc3829885.chain_1157,blat.proc3829885.chain_1162,blat.proc3829885.chain_1164,blat.proc3829885.chain_1165,blat.proc3829885.chain_1168,blat.proc3829885.chain_1171	9
scaffold_20	spliced_intron	7206140	7206288	-	asmbl_26810	none	STRG.23272.1,blat.proc3829899.chain_289	2	STRG.23272.2,blat.proc3829899.chain_290	2
scaffold_13	spliced_intron	16048875	16048994	+	asmbl_11525	none	STRG.16628.2	1	STRG.16628.3	1
scaffold_1	retained_intron	7290185	7290421	+	asmbl_1890,asmbl_1893	none	STRG.526.1,STRG.526.4,Trinity_GG_300_c0_g1_i1,blat.proc3829871.chain_531	4	STRG.526.2,Trinity_GG_300_c0_g1_i4,blat.proc3829871.chain_530	3
scaffold_12	spliced_intron	4721064	4721689	-	asmbl_7569	none	STRG.14636.1	1	STRG.14636.2,blat.proc3829893.chain_3003,blat.proc3829893.chain_3004	3
scaffold_24	retained_intron	3335564	3335692	+	asmbl_32155	none	blat.proc3829883.chain_3396	1	STRG.26510.1,blat.proc3829883.chain_3397	2
scaffold_5	alt_acceptor	18178813	18178814	+	asmbl_44867,asmbl_44868	none	STRG.6948.2,STRG.6948.3,Trinity_GG_3801_c1_g1_i4,blat.proc3829873.chain_3058,blat.proc3829873.chain_3060	5	STRG.6948.1	1
scaffold_17	spliced_intron	7023727	7024347	+	asmbl_18016	none	STRG.20355.1	1	STRG.20355.3	1
scaffold_20	spliced_intron	11671056	11671178	+	asmbl_26236,asmbl_26238	none	Trinity_GG_13100_c0_g1_i2,Trinity_GG_13100_c0_g1_i5,blat.proc3829883.chain_800,blat.proc3829883.chain_802	4	Trinity_GG_13100_c0_g1_i1,blat.proc3829883.chain_801	2
scaffold_5	ends_in_intron	14709227	14709227	+	asmbl_44629	none	STRG.6666.2,Trinity_GG_3632_c0_g1_i3,blat.proc3829873.chain_2781	3	STRG.6666.1,blat.proc3829873.chain_2780	2
scaffold_3	alt_acceptor	3830102	3830103	-	asmbl_38740,asmbl_38742	none	STRG.3103.2,blat.proc3829887.chain_2872,blat.proc3829887.chain_2873	3	STRG.3103.1,STRG.3103.3	2
scaffold_15	alt_donor	12742145	12742146	+	asmbl_14544,asmbl_14545,asmbl_14546	none	STRG.18731.3,STRG.18731.4,blat.proc3829879.chain_3351	3	STRG.18731.1,STRG.18731.2,blat.proc3829879.chain_3350,blat.proc3829879.chain_3352,blat.proc3829879.chain_3353	5
scaffold_5	alternate_exon	4698078	4698607	+	asmbl_43953	none	STRG.5917.5	1	STRG.5917.1,STRG.5917.2,STRG.5917.3,STRG.5917.4,blat.proc3829873.chain_2093,blat.proc3829873.chain_2094	6
scaffold_7	skipped_exon	5916256	5917155	-	asmbl_49714	none	STRG.8887.2,blat.proc3829891.chain_1168	2	STRG.8887.1,STRG.8887.3,STRG.8887.4,blat.proc3829891.chain_1163,blat.proc3829891.chain_1164,blat.proc3829891.chain_1165	6
scaffold_22	alternate_exon	6123382	6127862	+	asmbl_29389,asmbl_29391	none	STRG.24955.3,blat.proc3829883.chain_1996,blat.proc3829883.chain_2002	3	STRG.24955.7	1
scaffold_19	starts_in_intron	13353063	13353063	+	asmbl_22679	none	blat.proc3829881.chain_3600	1	STRG.22642.1,blat.proc3829881.chain_3601	2
scaffold_27	alternate_exon	4798127	4798264	-	asmbl_36923	none	STRG.28891.1,blat.proc3829901.chain_2068	2	STRG.28891.2,blat.proc3829901.chain_2067	2
scaffold_13	retained_intron	2653329	2653423	-	asmbl_9427	none	blat.proc3829895.chain_304	1	STRG.15566.2	1
scaffold_26	ends_in_intron	1891064	1891064	-	asmbl_34696	none	Trinity_GG_32651_c2_g1_i1,blat.proc3829901.chain_1163	2	STRG.27919.1,blat.proc3829901.chain_1160	2
scaffold_26	alt_acceptor	9841126	9841127	-	asmbl_35068	none	blat.proc3829901.chain_1620	1	STRG.28525.1,Trinity_GG_32930_c0_g1_i1,blat.proc3829901.chain_1622	3
scaffold_4	spliced_intron	12690853	12690998	-	asmbl_41695,asmbl_41697	none	STRG.4910.1,blat.proc3829889.chain_919,blat.proc3829889.chain_920	3	STRG.4910.2,blat.proc3829889.chain_922	2
scaffold_10	retained_intron	2669269	2669443	+	asmbl_4267	none	blat.proc3829877.chain_805	1	STRG.12074.1,blat.proc3829877.chain_804	2
scaffold_5	retained_exon	10145887	10145990	-	asmbl_45696	none	STRG.6300.1,blat.proc3829889.chain_2397,blat.proc3829889.chain_2398	3	STRG.6300.2	1
scaffold_5	retained_exon	1228071	1228148	-	asmbl_45231	none	STRG.5671.1,blat.proc3829889.chain_1825	2	STRG.5671.2	1
scaffold_7	spliced_intron	12279110	12279796	+	asmbl_51117,asmbl_51119,asmbl_51120	none	STRG.9315.1,blat.proc3829875.chain_1776,blat.proc3829875.chain_1777,blat.proc3829875.chain_1779	4	Trinity_GG_5173_c0_g1_i3,blat.proc3829875.chain_1778	2
scaffold_3	starts_in_intron	14258875	14258875	+	asmbl_40462,asmbl_40467	none	STRG.3764.4,Trinity_GG_2074_c0_g1_i4,blat.proc3829873.chain_102	3	STRG.3764.1,STRG.3764.2,blat.proc3829873.chain_104,blat.proc3829873.chain_105,blat.proc3829873.chain_106	5
scaffold_5	starts_in_intron	817355	817355	+	asmbl_43767	none	STRG.5632.3	1	STRG.5632.1,STRG.5632.2	2
scaffold_6	starts_in_intron	3041288	3041288	-	asmbl_48164	none	blat.proc3829889.chain_3315	1	STRG.7302.1,STRG.7302.2,STRG.7302.3,blat.proc3829889.chain_3316,blat.proc3829889.chain_3318,blat.proc3829889.chain_3319	6
scaffold_9	alternate_exon	3665717	3666117	+	asmbl_53889	none	STRG.10962.2	1	STRG.10962.1,Trinity_GG_6100_c0_g1_i3,blat.proc3829875.chain_3440	3
scaffold_8	spliced_intron	11850873	11851005	+	asmbl_52269,asmbl_52270,asmbl_52273,asmbl_52274,asmbl_52276,asmbl_52277,asmbl_52278,asmbl_52279,asmbl_52280,asmbl_52281,asmbl_52282,asmbl_52283,asmbl_52284	none	STRG.10382.2,STRG.10382.3,blat.proc3829875.chain_2966,blat.proc3829875.chain_2967,blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2975,blat.proc3829875.chain_2976,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978,blat.proc3829875.chain_2979	14	blat.proc3829875.chain_2971,blat.proc3829875.chain_2980	2
scaffold_13	starts_in_intron	6110063	6110063	+	asmbl_10898	none	STRG.15905.2	1	STRG.15905.1,blat.proc3829879.chain_604	2
scaffold_3	starts_in_intron	6959875	6959875	-	asmbl_38902	none	blat.proc3829887.chain_3089	1	STRG.3316.1,blat.proc3829887.chain_3090	2
scaffold_13	ends_in_intron	5528191	5528191	-	asmbl_9656	none	Trinity_GG_25923_c0_g2_i1,blat.proc3829895.chain_613	2	STRG.15836.1,blat.proc3829895.chain_612	2
scaffold_8	retained_exon	11849715	11849732	+	asmbl_52276,asmbl_52278,asmbl_52279	none	blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970	3	STRG.10382.3,blat.proc3829875.chain_2967,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2975,blat.proc3829875.chain_2976,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978,blat.proc3829875.chain_2979	9
scaffold_10	ends_in_intron	13581844	13581844	-	asmbl_3817	none	Trinity_GG_24262_c0_g1_i2,blat.proc3829893.chain_1460	2	STRG.12947.1,blat.proc3829893.chain_1461	2
scaffold_3	starts_in_intron	13989159	13989159	+	asmbl_40441	none	Trinity_GG_2070_c0_g2_i1,blat.proc3829873.chain_89	2	STRG.3741.1,STRG.3741.2,STRG.3741.3,STRG.3741.4,STRG.3741.5,Trinity_GG_2070_c0_g1_i1,Trinity_GG_2070_c0_g1_i2,Trinity_GG_2070_c0_g1_i4,blat.proc3829873.chain_86,blat.proc3829873.chain_87,blat.proc3829873.chain_88	11
scaffold_3	alt_acceptor	935338	935339	-	asmbl_38643	none	blat.proc3829887.chain_2736	1	STRG.2915.1,blat.proc3829887.chain_2737	2
scaffold_11	alt_donor	1862051	1862052	-	asmbl_6430	none	STRG.13334.2,blat.proc3829893.chain_1776	2	STRG.13334.1,blat.proc3829893.chain_1775	2
scaffold_114	skipped_exon	1785	2828	+	asmbl_7379	none	blat.proc3829885.chain_3193	1	STRG.30123.1,blat.proc3829885.chain_3192	2
scaffold_4	retained_intron	13365831	13366046	-	asmbl_41735	none	STRG.4965.1,Trinity_GG_19787_c0_g1_i2,blat.proc3829889.chain_1042	3	STRG.4965.2,blat.proc3829889.chain_1041	2
scaffold_22	alt_acceptor	4592883	4592884	-	asmbl_30037,asmbl_30038	none	STRG.24877.1,blat.proc3829899.chain_1913	2	STRG.24877.2,blat.proc3829899.chain_1911,blat.proc3829899.chain_1912	3
scaffold_19	alt_acceptor	12136982	12136983	+	asmbl_22564	none	STRG.22531.3	1	STRG.22531.1,STRG.22531.2,Trinity_GG_12454_c1_g1_i3,Trinity_GG_12454_c1_g1_i6,Trinity_GG_12454_c1_g1_i7,blat.proc3829881.chain_3458,blat.proc3829881.chain_3459,blat.proc3829881.chain_3460	8
scaffold_11	spliced_intron	4747068	4747472	+	asmbl_5474	none	STRG.13556.1	1	Trinity_GG_7437_c0_g1_i2,blat.proc3829877.chain_2013	2
scaffold_5	starts_in_intron	19028774	19028774	-	asmbl_46268	none	blat.proc3829889.chain_3004	1	STRG.7018.1,STRG.7018.2,STRG.7018.3,STRG.7018.4,STRG.7018.5,blat.proc3829889.chain_3003,blat.proc3829889.chain_3005,blat.proc3829889.chain_3006,blat.proc3829889.chain_3008,blat.proc3829889.chain_3009	10
scaffold_4	retained_exon	15677765	15677879	-	asmbl_41862	none	blat.proc3829889.chain_1190	1	STRG.5156.1,STRG.5156.2,blat.proc3829889.chain_1189,blat.proc3829889.chain_1191,blat.proc3829889.chain_1192,blat.proc3829889.chain_1193	6
scaffold_14	retained_intron	2301569	2301796	+	asmbl_11828	none	STRG.16832.2,Trinity_GG_9224_c7_g1_i1,blat.proc3829879.chain_1494	3	STRG.16832.4	1
scaffold_13	alt_acceptor	16437483	16437484	+	asmbl_11553,asmbl_11557	none	STRG.16684.1,STRG.16684.2,Trinity_GG_9187_c0_g1_i6,blat.proc3829879.chain_1411	4	Trinity_GG_9187_c0_g1_i5,blat.proc3829879.chain_1408	2
scaffold_27	spliced_intron	9882673	9882736	-	asmbl_37108	none	blat.proc3829901.chain_2288	1	STRG.29199.1	1
scaffold_3	starts_in_intron	16344959	16344959	-	asmbl_39447	none	blat.proc3829887.chain_3748	1	STRG.3908.1,STRG.3908.2,blat.proc3829887.chain_3747	3
scaffold_21	alt_donor	4969699	4969700	+	asmbl_28564	none	STRG.24026.1,blat.proc3829883.chain_1182	2	STRG.24026.2	1
scaffold_9	alternate_exon	16353400	16353525	-	asmbl_55534	none	STRG.11781.2	1	STRG.11781.1,Trinity_GG_23478_c0_g1_i1,blat.proc3829893.chain_77	3
scaffold_4	starts_in_intron	17698530	17698530	-	asmbl_42058	none	blat.proc3829889.chain_1324	1	STRG.5367.1,blat.proc3829889.chain_1325	2
scaffold_4	starts_in_intron	12790084	12790084	+	asmbl_43087	none	blat.proc3829873.chain_1270	1	STRG.4920.1,STRG.4920.2,STRG.4920.3,blat.proc3829873.chain_1273,blat.proc3829873.chain_1275	5
scaffold_13	ends_in_intron	5464440	5464440	+	asmbl_10836	none	blat.proc3829879.chain_528	1	STRG.15829.1,blat.proc3829879.chain_527	2
scaffold_26	alt_acceptor	6301423	6301424	-	asmbl_34939	none	STRG.28309.1,blat.proc3829901.chain_1480	2	STRG.28309.2,STRG.28309.3,blat.proc3829901.chain_1481	3
scaffold_8	alternate_exon	9864409	9868366	+	asmbl_52100	none	STRG.10225.4	1	blat.proc3829875.chain_2698	1
scaffold_13	spliced_intron	9896483	9896567	-	asmbl_10004	none	STRG.16220.1,blat.proc3829895.chain_1000	2	blat.proc3829895.chain_999	1
scaffold_21	spliced_intron	5536672	5536770	-	asmbl_27700,asmbl_27702,asmbl_27704,asmbl_27705	none	STRG.24073.1,STRG.24073.3,blat.proc3829899.chain_1165,blat.proc3829899.chain_1168	4	STRG.24073.2,Trinity_GG_30443_c0_g1_i6,blat.proc3829899.chain_1163,blat.proc3829899.chain_1166,blat.proc3829899.chain_1167	5
scaffold_21	spliced_intron	2162273	2162399	-	asmbl_27459	none	STRG.23826.1,blat.proc3829899.chain_826	2	blat.proc3829899.chain_825	1
scaffold_21	spliced_intron	3015285	3015391	+	asmbl_28456,asmbl_28458,asmbl_28459	none	STRG.23914.2,blat.proc3829883.chain_1069,blat.proc3829883.chain_1070,blat.proc3829883.chain_1071	4	blat.proc3829883.chain_1068	1
scaffold_16	spliced_intron	4062380	4062655	-	asmbl_16218,asmbl_16220,asmbl_16221	none	STRG.19211.1,STRG.19211.2,blat.proc3829897.chain_228,blat.proc3829897.chain_229,blat.proc3829897.chain_231	5	Trinity_GG_27796_c0_g1_i4,blat.proc3829897.chain_230	2
scaffold_14	alt_acceptor	3588783	3588784	+	asmbl_11929,asmbl_11930	none	STRG.16927.2,blat.proc3829879.chain_1658	2	STRG.16927.3	1
scaffold_19	spliced_intron	7366595	7366687	-	asmbl_21450	none	STRG.22206.1,blat.proc3829897.chain_2961	2	Trinity_GG_29400_c0_g1_i1,blat.proc3829897.chain_2960	2
scaffold_4	alt_acceptor	13430976	13430977	+	asmbl_43128,asmbl_43130	none	STRG.4980.1,STRG.4980.3	2	STRG.4980.2,STRG.4980.4	2
scaffold_24	ends_in_intron	5331189	5331189	-	asmbl_32889	none	blat.proc3829899.chain_3682	1	STRG.26605.1,blat.proc3829899.chain_3679,blat.proc3829899.chain_3680	3
scaffold_1	retained_exon	22371428	22371479	+	asmbl_2676,asmbl_2680	none	STRG.1490.2,STRG.1490.4	2	STRG.1490.3,STRG.1490.5	2
scaffold_14	retained_intron	11945131	11945237	+	asmbl_12390	none	Trinity_GG_9639_c0_g1_i1,blat.proc3829879.chain_2227	2	STRG.17520.1,Trinity_GG_9639_c0_g1_i2,blat.proc3829879.chain_2226	3
scaffold_7	starts_in_intron	15289450	15289450	+	asmbl_51325	none	STRG.9534.2	1	STRG.9534.1	1
scaffold_6	alt_acceptor	14196362	14196363	+	asmbl_47529	none	STRG.8178.1,Trinity_GG_4445_c0_g1_i3,blat.proc3829875.chain_526,blat.proc3829875.chain_527	4	STRG.8178.2,blat.proc3829875.chain_525	2
scaffold_18	alternate_exon	1513199	1513420	+	asmbl_20386	none	STRG.21033.4	1	STRG.21033.1,STRG.21033.2,STRG.21033.3,blat.proc3829881.chain_1931	4
scaffold_17	alt_acceptor	1365687	1365688	+	asmbl_17734	none	STRG.19962.2	1	STRG.19962.1	1
scaffold_15	alt_acceptor	12436177	12436178	+	asmbl_14513	none	blat.proc3829879.chain_3291	1	STRG.18688.1,blat.proc3829879.chain_3278,blat.proc3829879.chain_3280,blat.proc3829879.chain_3286	4
scaffold_4	alternate_exon	5188255	5188315	-	asmbl_41299	none	STRG.4410.2,blat.proc3829889.chain_522	2	STRG.4410.1,STRG.4410.3,STRG.4410.4,blat.proc3829889.chain_521,blat.proc3829889.chain_523	5
scaffold_11	starts_in_intron	13462351	13462351	-	asmbl_7110	none	Trinity_GG_24953_c0_g1_i5,blat.proc3829893.chain_2632	2	STRG.14196.1,STRG.14196.2,Trinity_GG_24953_c0_g1_i1,Trinity_GG_24953_c0_g1_i2,Trinity_GG_24953_c0_g1_i4,blat.proc3829893.chain_2631,blat.proc3829893.chain_2633,blat.proc3829893.chain_2634	8
scaffold_5	starts_in_intron	18703275	18703275	-	asmbl_46235	none	blat.proc3829889.chain_2964	1	STRG.6989.1,STRG.6989.2	2
scaffold_26	starts_in_intron	5489620	5489620	+	asmbl_35530	none	blat.proc3829885.chain_1191	1	STRG.28241.4,blat.proc3829885.chain_1190	2
scaffold_8	skipped_exon	17454124	17455338	+	asmbl_52467	none	STRG.10660.1,Trinity_GG_5884_c0_g1_i2,blat.proc3829875.chain_3086	3	STRG.10660.2,Trinity_GG_5884_c0_g1_i5,blat.proc3829875.chain_3085	3
scaffold_7	alt_donor	8860418	8860419	+	asmbl_50952	none	STRG.9119.2	1	STRG.9119.1,blat.proc3829875.chain_1574	2
scaffold_6	alt_donor	13925515	13925516	-	asmbl_48901	none	STRG.8136.1	1	STRG.8136.2	1
scaffold_21	alt_donor	1053981	1053982	-	asmbl_27400,asmbl_27406	none	STRG.23776.1,Trinity_GG_30261_c0_g1_i11,blat.proc3829899.chain_850	3	STRG.23776.2,Trinity_GG_30261_c0_g1_i4,blat.proc3829899.chain_852	3
scaffold_18	retained_intron	8912486	8913423	-	asmbl_20076,asmbl_20078,asmbl_20079,asmbl_20084	none	STRG.21550.4,STRG.21550.6,blat.proc3829897.chain_2394,blat.proc3829897.chain_2395	4	STRG.21550.3,blat.proc3829897.chain_2398	2
scaffold_9	alt_acceptor	8094222	8094223	-	asmbl_55088	none	STRG.11229.2	1	STRG.11229.1,blat.proc3829891.chain_3381	2
scaffold_2	retained_intron	166805	166882	+	asmbl_24096	none	blat.proc3829871.chain_1597	1	STRG.1523.1,STRG.1523.2,blat.proc3829871.chain_1595,blat.proc3829871.chain_1599	4
scaffold_18	alt_acceptor	7867861	7867862	+	asmbl_20824,asmbl_20828,asmbl_20831	none	STRG.21477.1,STRG.21477.6,Trinity_GG_11877_c0_g1_i12,blat.proc3829881.chain_2474,blat.proc3829881.chain_2475	5	STRG.21477.5,blat.proc3829881.chain_2470	2
scaffold_25	alt_donor	9551845	9551846	+	asmbl_33821	none	STRG.27755.3	1	STRG.27755.1,blat.proc3829885.chain_777,blat.proc3829885.chain_779	3
scaffold_11	ends_in_intron	8479712	8479712	+	asmbl_5748	none	Trinity_GG_7647_c0_g1_i4,blat.proc3829877.chain_2359	2	STRG.13851.1,STRG.13851.2,STRG.13851.3,Trinity_GG_7647_c0_g1_i2,Trinity_GG_7647_c0_g1_i3,Trinity_GG_7647_c0_g1_i5,blat.proc3829877.chain_2360,blat.proc3829877.chain_2361,blat.proc3829877.chain_2362,blat.proc3829877.chain_2363	10
scaffold_13	alt_acceptor	354775	354776	-	asmbl_9268,asmbl_9269,asmbl_9270,asmbl_9271,asmbl_9272,asmbl_9274	none	STRG.15424.1,Trinity_GG_25667_c0_g1_i4,Trinity_GG_25667_c0_g1_i5,Trinity_GG_25667_c0_g1_i6,Trinity_GG_25667_c0_g1_i7,Trinity_GG_25667_c0_g1_i8,blat.proc3829895.chain_167,blat.proc3829895.chain_168,blat.proc3829895.chain_169,blat.proc3829895.chain_170,blat.proc3829895.chain_171,blat.proc3829895.chain_174	12	Trinity_GG_25667_c0_g1_i10,blat.proc3829895.chain_172	2
scaffold_26	starts_in_intron	6371599	6371599	+	asmbl_35605	none	blat.proc3829885.chain_1344	1	STRG.28322.1,blat.proc3829885.chain_1343	2
scaffold_3	ends_in_intron	14776352	14776352	-	asmbl_39368	none	Trinity_GG_19121_c0_g1_i2,blat.proc3829887.chain_3622	2	STRG.3820.1,STRG.3820.2,STRG.3820.3,Trinity_GG_19121_c0_g1_i3,blat.proc3829887.chain_3623,blat.proc3829887.chain_3624,blat.proc3829887.chain_3625	7
scaffold_18	starts_in_intron	6958685	6958685	+	asmbl_20729	none	blat.proc3829881.chain_2351	1	STRG.21392.1	1
scaffold_4	ends_in_intron	4094392	4094392	+	asmbl_42548	none	blat.proc3829873.chain_633	1	STRG.4313.1,STRG.4313.2,STRG.4313.3,STRG.4313.4,STRG.4313.5,blat.proc3829873.chain_635,blat.proc3829873.chain_636,blat.proc3829873.chain_638,blat.proc3829873.chain_640	9
scaffold_2	alt_acceptor	16414057	16414058	-	asmbl_23702,asmbl_23704,asmbl_23707	none	STRG.2585.1,blat.proc3829887.chain_2410,blat.proc3829887.chain_2411,blat.proc3829887.chain_2412	4	STRG.2585.2,blat.proc3829887.chain_2409	2
scaffold_2	ends_in_intron	7470542	7470542	-	asmbl_23287	none	Trinity_GG_18127_c0_g1_i2,blat.proc3829887.chain_1901	2	STRG.2075.3,STRG.2075.4,Trinity_GG_18127_c0_g1_i18,Trinity_GG_18127_c0_g1_i8,blat.proc3829887.chain_1892,blat.proc3829887.chain_1893,blat.proc3829887.chain_1895,blat.proc3829887.chain_1896	8
scaffold_26	retained_intron	5043870	5044023	+	asmbl_35470,asmbl_35476	none	blat.proc3829883.chain_2394,blat.proc3829883.chain_2396,blat.proc3829885.chain_1167	3	STRG.28206.1,blat.proc3829885.chain_1156,blat.proc3829885.chain_1157,blat.proc3829885.chain_1158,blat.proc3829885.chain_1159,blat.proc3829885.chain_1163,blat.proc3829885.chain_1164,blat.proc3829885.chain_1168,blat.proc3829885.chain_1169	9
scaffold_8	alt_donor	11761437	11761438	-	asmbl_53163	none	STRG.10372.2	1	STRG.10372.3	1
scaffold_13	alt_acceptor	11850455	11850456	-	asmbl_10071	none	STRG.16305.2	1	STRG.16305.1	1
scaffold_5	retained_exon	8671499	8671543	+	asmbl_44222	none	STRG.6198.2,blat.proc3829873.chain_2283	2	STRG.6198.1,blat.proc3829873.chain_2281	2
scaffold_5	alt_donor	8680296	8680297	-	asmbl_45606,asmbl_45608	none	STRG.6199.1,blat.proc3829889.chain_2267,blat.proc3829889.chain_2268	3	STRG.6199.2,blat.proc3829889.chain_2266	2
scaffold_15	spliced_intron	13759939	13760410	-	asmbl_15682	none	blat.proc3829895.chain_3564	1	STRG.18798.2,Trinity_GG_27577_c1_g1_i2,blat.proc3829895.chain_3563	3
scaffold_16	starts_in_intron	8581226	8581226	+	asmbl_17207	none	blat.proc3829881.chain_349	1	STRG.19476.1,STRG.19476.2,blat.proc3829881.chain_350,blat.proc3829881.chain_351	4
scaffold_22	retained_intron	4278389	4278555	-	asmbl_29998	none	STRG.24827.1,Trinity_GG_30895_c0_g1_i1,blat.proc3829899.chain_1969	3	STRG.24827.2	1
scaffold_22	retained_intron	4240365	4240805	-	asmbl_29984	none	blat.proc3829899.chain_1980	1	STRG.24838.1,STRG.24838.4,blat.proc3829899.chain_1981,blat.proc3829899.chain_1983	4
scaffold_2	ends_in_intron	889459	889459	+	asmbl_24146,asmbl_24147,asmbl_24150,asmbl_24152	none	STRG.1564.1,STRG.1564.2,STRG.1564.3,STRG.1564.4	4	blat.proc3829871.chain_1547,blat.proc3829871.chain_1550	2
scaffold_16	retained_intron	14513223	14513295	-	asmbl_16631	none	blat.proc3829897.chain_774	1	STRG.19819.1,blat.proc3829897.chain_770,blat.proc3829897.chain_771	3
scaffold_13	starts_in_intron	4472201	4472201	-	asmbl_9599	none	blat.proc3829895.chain_518	1	STRG.15761.1	1
scaffold_10	alt_donor	549382	549383	-	asmbl_2880,asmbl_2882	none	STRG.11927.1,STRG.11927.2,Trinity_GG_23639_c0_g1_i5,blat.proc3829893.chain_354,blat.proc3829893.chain_355	5	STRG.11927.3,Trinity_GG_23639_c0_g1_i3,blat.proc3829893.chain_353	3
scaffold_21	alt_acceptor	4108937	4108938	+	asmbl_28526	none	STRG.23973.2,blat.proc3829883.chain_1131	2	STRG.23973.1,STRG.23973.3	2
scaffold_16	alt_acceptor	5804953	5804954	+	asmbl_17019,asmbl_17020	none	STRG.19311.1,Trinity_GG_10534_c0_g1_i2,Trinity_GG_10534_c0_g1_i4,blat.proc3829881.chain_94,blat.proc3829881.chain_95	5	STRG.19311.3	1
scaffold_6	alt_donor	19116586	19116587	-	asmbl_49236	none	STRG.8568.5	1	STRG.8568.1,STRG.8568.3,Trinity_GG_21904_c0_g1_i1,Trinity_GG_21904_c0_g1_i3,blat.proc3829891.chain_897,blat.proc3829891.chain_898	6
scaffold_16	retained_exon	125551	125642	+	asmbl_16785	none	STRG.18995.1,Trinity_GG_10419_c0_g1_i4,blat.proc3829879.chain_3618	3	Trinity_GG_10419_c0_g1_i5,blat.proc3829879.chain_3617	2
scaffold_322	retained_intron	6574	6737	-	asmbl_40913	none	Trinity_GG_33980_c0_g1_i6,Trinity_GG_34090_c0_g1_i4,blat.proc3829901.chain_3329	3	STRG.30256.4	1
scaffold_9	spliced_intron	11551708	11551928	-	asmbl_55258,asmbl_55260	none	STRG.11459.1,blat.proc3829891.chain_3587,blat.proc3829891.chain_3589	3	STRG.11459.2,blat.proc3829891.chain_3585,blat.proc3829891.chain_3588	3
scaffold_12	skipped_exon	2926727	2928950	-	asmbl_7465	none	STRG.14515.1	1	STRG.14515.5	1
scaffold_15	skipped_exon	15409801	15410226	+	asmbl_14719	none	STRG.18921.5,blat.proc3829879.chain_3518	2	STRG.18921.2,STRG.18921.3,STRG.18921.9,blat.proc3829879.chain_3515,blat.proc3829879.chain_3517	5
scaffold_3	spliced_intron	13700565	13700819	+	asmbl_40410	none	STRG.3712.2,blat.proc3829873.chain_130	2	blat.proc3829873.chain_131	1
scaffold_24	alt_donor	5334418	5334419	-	asmbl_32888	none	blat.proc3829899.chain_3679	1	STRG.26605.1,blat.proc3829899.chain_3680,blat.proc3829899.chain_3681	3
scaffold_9	alt_donor	9605440	9605441	-	asmbl_55177	none	STRG.11317.1,Trinity_GG_23259_c0_g1_i1,blat.proc3829891.chain_3421	3	STRG.11317.2	1
scaffold_5	skipped_exon	9694639	9695172	+	asmbl_44295	none	STRG.6282.3	1	STRG.6282.1,STRG.6282.2,blat.proc3829873.chain_2435,blat.proc3829873.chain_2436	4
scaffold_7	alt_acceptor	13866125	13866126	-	asmbl_50135	none	STRG.9469.1	1	blat.proc3829891.chain_1673,blat.proc3829891.chain_1674	2
scaffold_3	retained_intron	13462730	13462851	+	asmbl_40400	none	blat.proc3829873.chain_32	1	STRG.3701.1,blat.proc3829873.chain_31	2
scaffold_1	spliced_intron	6323837	6323948	+	asmbl_1818,asmbl_1819	none	STRG.426.1,blat.proc3829871.chain_477,blat.proc3829871.chain_479	3	blat.proc3829871.chain_478	1
scaffold_6	ends_in_intron	18221150	18221150	+	asmbl_47763	none	Trinity_GG_4676_c0_g1_i2,blat.proc3829875.chain_908	2	STRG.8491.1	1
scaffold_20	skipped_exon	10384363	10384667	+	asmbl_26107,asmbl_26109,asmbl_26114	none	STRG.23569.1,STRG.23569.2,Trinity_GG_12979_c0_g1_i2,Trinity_GG_12979_c0_g1_i6,blat.proc3829883.chain_591,blat.proc3829883.chain_594	6	STRG.23569.3,STRG.23569.5	2
scaffold_1	spliced_intron	20339758	20340702	+	asmbl_2614	none	blat.proc3829871.chain_1453	1	STRG.1398.2,STRG.1398.3,STRG.1398.6,Trinity_GG_815_c2_g1_i8,blat.proc3829871.chain_1445,blat.proc3829871.chain_1446,blat.proc3829871.chain_1450	7
scaffold_18	starts_in_intron	1391699	1391699	-	asmbl_19652	none	blat.proc3829897.chain_1934	1	STRG.21014.1,STRG.21014.2,blat.proc3829897.chain_1932,blat.proc3829897.chain_1933,blat.proc3829897.chain_1935,blat.proc3829897.chain_1937	6
scaffold_1	starts_in_intron	11426488	11426488	+	asmbl_2093	none	Trinity_GG_463_c0_g1_i4,blat.proc3829871.chain_802	2	STRG.751.1,STRG.751.2,STRG.751.3,Trinity_GG_463_c0_g1_i3,blat.proc3829871.chain_801,blat.proc3829871.chain_803,blat.proc3829871.chain_804	7
scaffold_1	alternate_exon	3566661	3575129	+	asmbl_1602	none	STRG.219.1,Trinity_GG_130_c1_g1_i1,Trinity_GG_151_c0_g1_i1,Trinity_GG_153_c0_g1_i1,Trinity_GG_157_c0_g1_i1,blat.proc3829871.chain_221,blat.proc3829871.chain_223,blat.proc3829871.chain_263,blat.proc3829871.chain_265,blat.proc3829871.chain_272	10	STRG.219.2,blat.proc3829871.chain_222	2
scaffold_11	alt_acceptor	16465387	16465388	-	asmbl_7198,asmbl_7202	none	STRG.14328.2,STRG.14328.4	2	STRG.14328.3	1
scaffold_4	alt_acceptor	5474408	5474409	+	asmbl_42683	none	STRG.4439.2	1	STRG.4439.1,blat.proc3829873.chain_803	2
scaffold_6	alt_donor	13925551	13925552	-	asmbl_48900	none	STRG.8136.2	1	STRG.8136.1	1
scaffold_26	alternate_exon	437414	437479	+	asmbl_35214	none	blat.proc3829885.chain_868	1	blat.proc3829885.chain_869	1
scaffold_16	alt_acceptor	312004	312005	-	asmbl_16024	none	blat.proc3829897.chain_56	1	STRG.19011.1,STRG.19011.2,STRG.19011.3,STRG.19011.4,blat.proc3829897.chain_57	5
scaffold_5	retained_intron	13110778	13111063	+	asmbl_44528	none	Trinity_GG_3572_c0_g1_i1,blat.proc3829873.chain_2681	2	STRG.6539.1,blat.proc3829873.chain_2680	2
scaffold_7	retained_intron	12447826	12449542	-	asmbl_50041	none	blat.proc3829891.chain_1606	1	STRG.9342.3,STRG.9342.4,blat.proc3829891.chain_1605	3
scaffold_2	retained_intron	9790539	9790880	+	asmbl_24721	none	Trinity_GG_1191_c0_g1_i6,blat.proc3829871.chain_2218	2	STRG.2185.1,blat.proc3829871.chain_2216,blat.proc3829871.chain_2217,blat.proc3829871.chain_2219,blat.proc3829871.chain_2220,blat.proc3829871.chain_2221,blat.proc3829871.chain_2222	7
scaffold_7	retained_exon	18394449	18394507	-	asmbl_50289,asmbl_50296	none	Trinity_GG_22427_c0_g1_i11,blat.proc3829891.chain_1869,blat.proc3829891.chain_1875	3	STRG.9659.1,STRG.9659.3,STRG.9659.5,Trinity_GG_22427_c0_g1_i10,blat.proc3829891.chain_1868,blat.proc3829891.chain_1870	6
scaffold_11	spliced_intron	10144217	10144522	-	asmbl_6962	none	STRG.14016.2	1	STRG.14016.1,Trinity_GG_24849_c0_g1_i1	2
scaffold_9	spliced_intron	13040881	13040907	+	asmbl_54462	none	STRG.11604.1	1	STRG.11604.2	1
scaffold_5	retained_intron	14731563	14731696	-	asmbl_45997	none	blat.proc3829889.chain_2716	1	STRG.6667.1,blat.proc3829889.chain_2713	2
scaffold_11	alternate_exon	1160579	1160634	+	asmbl_5289,asmbl_5290	none	STRG.13299.2,STRG.13299.3	2	STRG.13299.1,Trinity_GG_7310_c0_g1_i1,blat.proc3829877.chain_1802,blat.proc3829877.chain_1803,blat.proc3829877.chain_1804	5
scaffold_1	alt_donor	16225350	16225351	+	asmbl_2449	none	STRG.1132.2,blat.proc3829871.chain_1216	2	STRG.1132.1,blat.proc3829871.chain_1217	2
scaffold_5	alt_acceptor	2536535	2536536	+	asmbl_43839,asmbl_43840	none	STRG.5769.3,blat.proc3829873.chain_1953	2	STRG.5769.1,STRG.5769.4,blat.proc3829873.chain_1954,blat.proc3829873.chain_1955	4
scaffold_2	alt_donor	924505	924506	+	asmbl_24174,asmbl_24175	none	blat.proc3829871.chain_1535,blat.proc3829871.chain_1542	2	STRG.1569.3,STRG.1569.4	2
scaffold_6	alt_acceptor	12621344	12621345	-	asmbl_48768	none	Trinity_GG_21569_c0_g1_i2,blat.proc3829891.chain_312	2	STRG.8011.1,Trinity_GG_21569_c0_g1_i3,blat.proc3829891.chain_310	3
scaffold_21	spliced_intron	8278506	8278610	+	asmbl_28819,asmbl_28821	none	STRG.24353.1,STRG.24353.3	2	STRG.24353.4	1
scaffold_6	alternate_exon	12999182	13003403	-	asmbl_48799,asmbl_48800,asmbl_48801	none	STRG.8061.6,STRG.8061.7,STRG.8061.8,Trinity_GG_21547_c0_g1_i11,Trinity_GG_21547_c0_g1_i2,Trinity_GG_21547_c0_g1_i7,blat.proc3829891.chain_267,blat.proc3829891.chain_269,blat.proc3829891.chain_270	9	STRG.8061.9,blat.proc3829891.chain_276	2
scaffold_9	alt_acceptor	3913098	3913099	-	asmbl_54912	none	STRG.10999.1,Trinity_GG_23099_c0_g1_i1,blat.proc3829891.chain_3141	3	STRG.10999.2	1
scaffold_2	ends_in_intron	5983748	5983748	-	asmbl_23197	none	Trinity_GG_18118_c0_g1_i2,blat.proc3829887.chain_1866	2	STRG.1978.1,blat.proc3829887.chain_1865	2
scaffold_16	skipped_exon	7227132	7228890	-	asmbl_16346,asmbl_16355	none	STRG.19382.6,STRG.19382.7	2	STRG.19382.1,STRG.19382.3	2
scaffold_16	alt_acceptor	14679042	14679043	+	asmbl_17504,asmbl_17506	none	STRG.19857.1,STRG.19857.2,blat.proc3829881.chain_708	3	blat.proc3829881.chain_707	1
scaffold_8	ends_in_intron	12854837	12854837	+	asmbl_52337	none	blat.proc3829875.chain_2962	1	STRG.10461.1,blat.proc3829875.chain_2961	2
scaffold_21	skipped_exon	8129636	8132125	-	asmbl_27911	none	blat.proc3829899.chain_1382	1	STRG.24334.5,blat.proc3829899.chain_1383,blat.proc3829899.chain_1385,blat.proc3829899.chain_1387	4
scaffold_22	alternate_exon	6217104	6222120	-	asmbl_30094	none	STRG.24965.4	1	STRG.24965.3	1
scaffold_21	alternate_exon	2469886	2475541	-	asmbl_27484	none	blat.proc3829899.chain_899,blat.proc3829899.chain_904	2	STRG.23863.3,Trinity_GG_30292_c0_g1_i12,blat.proc3829899.chain_903	3
scaffold_6	alternate_exon	2756120	2756206	+	asmbl_46717	none	STRG.7264.6,Trinity_GG_3999_c0_g1_i2	2	STRG.7264.2,STRG.7264.4	2
scaffold_8	spliced_intron	18108227	18108429	+	asmbl_52525	none	STRG.10708.1,Trinity_GG_5942_c0_g1_i1,blat.proc3829875.chain_3201	3	STRG.10708.2,Trinity_GG_5942_c0_g1_i3,blat.proc3829875.chain_3202	3
scaffold_5	starts_in_intron	4596254	4596254	+	asmbl_43939	none	Trinity_GG_3229_c0_g1_i2,blat.proc3829873.chain_2041	2	STRG.5904.1,STRG.5904.2,blat.proc3829873.chain_2040,blat.proc3829873.chain_2043,blat.proc3829873.chain_2044	5
scaffold_2	retained_exon	3348276	3348362	-	asmbl_22996	none	STRG.1768.1	1	STRG.1768.2	1
scaffold_27	alternate_exon	2997038	2997281	+	asmbl_36111,asmbl_36112,asmbl_36113,asmbl_36114,asmbl_36115,asmbl_36116	none	STRG.28767.1,STRG.28767.2,Trinity_GG_15918_c0_g1_i12,blat.proc3829885.chain_1840,blat.proc3829885.chain_1842,blat.proc3829885.chain_1843,blat.proc3829885.chain_1845,blat.proc3829885.chain_1848,blat.proc3829885.chain_1849	9	STRG.28767.5,blat.proc3829885.chain_1839,blat.proc3829885.chain_1841	3
scaffold_5	ends_in_intron	1485596	1485596	+	asmbl_43796	none	STRG.5700.1	1	blat.proc3829873.chain_1869	1
scaffold_1	alt_donor	18043852	18043853	-	asmbl_1082	none	STRG.1266.1,blat.proc3829887.chain_1162	2	STRG.1266.2,blat.proc3829887.chain_1163	2
scaffold_11	retained_intron	13541556	13541653	+	asmbl_6038	none	Trinity_GG_7827_c0_g1_i1,blat.proc3829877.chain_2687	2	STRG.14199.1,STRG.14199.2,Trinity_GG_7827_c0_g1_i2,blat.proc3829877.chain_2686	4
scaffold_22	alt_acceptor	11640265	11640266	-	asmbl_30460	none	STRG.25493.4	1	STRG.25493.1,STRG.25493.2,STRG.25493.3,blat.proc3829899.chain_2578	4
scaffold_6	alt_donor	11482800	11482801	+	asmbl_47263	none	STRG.7936.2,blat.proc3829875.chain_300	2	STRG.7936.1,STRG.7936.3,blat.proc3829875.chain_299,blat.proc3829875.chain_301,blat.proc3829875.chain_304	5
scaffold_5	alternate_exon	18698535	18699289	-	asmbl_46230	none	STRG.6987.3,Trinity_GG_20913_c1_g1_i1,blat.proc3829889.chain_2985	3	blat.proc3829889.chain_2984	1
scaffold_8	alt_donor	16040585	16040586	-	asmbl_53356	none	STRG.10578.2,blat.proc3829891.chain_2727	2	STRG.10578.3	1
scaffold_8	alt_donor	3218315	3218316	+	asmbl_51736,asmbl_51737,asmbl_51738	none	STRG.9823.3,STRG.9823.5,Trinity_GG_5470_c1_g1_i2,blat.proc3829875.chain_2323	4	blat.proc3829875.chain_2322	1
scaffold_17	spliced_intron	7049932	7050209	+	asmbl_18019	none	STRG.20358.2,blat.proc3829881.chain_1120	2	blat.proc3829881.chain_1121	1
scaffold_2	skipped_exon	9195241	9195673	-	asmbl_23377,asmbl_23381	none	STRG.2167.2,Trinity_GG_18242_c0_g1_i1,Trinity_GG_18242_c0_g1_i2,blat.proc3829887.chain_2099,blat.proc3829887.chain_2101	5	STRG.2167.1,Trinity_GG_18242_c0_g1_i3,Trinity_GG_18242_c0_g1_i4,Trinity_GG_18242_c0_g1_i7,blat.proc3829887.chain_2100,blat.proc3829887.chain_2102,blat.proc3829887.chain_2104	7
scaffold_6	spliced_intron	7174460	7174541	+	asmbl_46988,asmbl_46989,asmbl_46990,asmbl_46991,asmbl_46992,asmbl_46993	none	STRG.7621.1,STRG.7621.2,STRG.7621.3,STRG.7621.4,blat.proc3829873.chain_3736,blat.proc3829873.chain_3739	6	blat.proc3829873.chain_3737	1
scaffold_17	skipped_exon	5323173	5324241	+	asmbl_17944	none	STRG.20241.1,blat.proc3829881.chain_959	2	STRG.20241.2	1
scaffold_8	spliced_intron	16502745	16503680	-	asmbl_53406,asmbl_53411,asmbl_53413,asmbl_53414,asmbl_53415,asmbl_53416,asmbl_53418,asmbl_53419,asmbl_53421,asmbl_53422,asmbl_53424,asmbl_53425,asmbl_53427,asmbl_53429,asmbl_53430	none	STRG.10621.1,STRG.10621.2,STRG.10621.3,STRG.10621.4,Trinity_GG_22960_c0_g1_i18,Trinity_GG_22960_c0_g1_i19,Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2857,blat.proc3829891.chain_2860,blat.proc3829891.chain_2862,blat.proc3829891.chain_2863,blat.proc3829891.chain_2864,blat.proc3829891.chain_2867,blat.proc3829891.chain_2868,blat.proc3829891.chain_2869,blat.proc3829891.chain_2870,blat.proc3829891.chain_2871,blat.proc3829891.chain_2872	22	Trinity_GG_22960_c0_g1_i24,blat.proc3829891.chain_2856	2
scaffold_1	alternate_exon	6859849	6859901	-	asmbl_401	none	STRG.482.3,blat.proc3829887.chain_376	2	STRG.482.1,blat.proc3829887.chain_375	2
scaffold_3	retained_intron	14317546	14317663	-	asmbl_39305	none	blat.proc3829887.chain_3561	1	STRG.3769.1,STRG.3769.2,blat.proc3829887.chain_3562,blat.proc3829887.chain_3563	4
scaffold_9	alt_acceptor	12314498	12314499	-	asmbl_55332	none	STRG.11550.2,blat.proc3829891.chain_3641	2	STRG.11550.1,blat.proc3829891.chain_3642	2
scaffold_6	spliced_intron	16614134	16614236	+	asmbl_47651,asmbl_47652	none	STRG.8384.1,STRG.8384.2,blat.proc3829875.chain_768	3	STRG.8384.3,blat.proc3829875.chain_767	2
scaffold_3	alt_acceptor	12670605	12670606	-	asmbl_39176	none	STRG.3661.2	1	STRG.3661.1,blat.proc3829887.chain_3379	2
scaffold_9	spliced_intron	17851315	17851392	+	asmbl_54630,asmbl_54631,asmbl_54633	none	STRG.11860.1,Trinity_GG_6607_c0_g1_i6,Trinity_GG_6607_c0_g1_i9,blat.proc3829877.chain_588,blat.proc3829877.chain_589	5	STRG.11860.3	1
scaffold_14	alt_acceptor	404836	404837	+	asmbl_11724	none	STRG.16722.7,Trinity_GG_9219_c0_g1_i17,blat.proc3829879.chain_1472	3	STRG.16722.6	1
scaffold_1	retained_intron	6953430	6953629	+	asmbl_1853	none	STRG.490.2,Trinity_GG_296_c0_g1_i2,blat.proc3829871.chain_525	3	STRG.490.1	1
scaffold_18	ends_in_intron	13653488	13653488	-	asmbl_20208	none	blat.proc3829897.chain_2560	1	STRG.21788.1,STRG.21788.2,blat.proc3829897.chain_2559	3
scaffold_10	retained_exon	13889899	13889981	-	asmbl_3840	none	STRG.12964.1,blat.proc3829893.chain_1445	2	STRG.12964.2	1
scaffold_27	alt_donor	9944986	9944987	+	asmbl_36503	none	blat.proc3829885.chain_2340	1	STRG.29204.1,blat.proc3829885.chain_2341	2
scaffold_7	alternate_exon	3965525	3965719	+	asmbl_50584	none	STRG.8785.2,blat.proc3829875.chain_1144	2	STRG.8785.1,blat.proc3829875.chain_1145	2
scaffold_6	alt_acceptor	9366750	9366751	-	asmbl_48554	none	STRG.7798.2	1	STRG.7798.1,blat.proc3829891.chain_54	2
scaffold_5	starts_in_intron	15416947	15416947	-	asmbl_46049	none	blat.proc3829889.chain_2798	1	STRG.6723.1,STRG.6723.2,STRG.6723.3,blat.proc3829889.chain_2796,blat.proc3829889.chain_2799	5
scaffold_26	alternate_exon	3621038	3622429	+	asmbl_35333	none	STRG.28026.2,blat.proc3829885.chain_998	2	STRG.28026.3	1
scaffold_22	alternate_exon	5959232	5959294	-	asmbl_30065	none	blat.proc3829899.chain_2040	1	STRG.24930.1,blat.proc3829899.chain_2039	2
scaffold_5	retained_intron	9085338	9085480	+	asmbl_44262,asmbl_44263,asmbl_44264,asmbl_44267,asmbl_44271	none	STRG.6237.2,blat.proc3829873.chain_2418,blat.proc3829873.chain_2421,blat.proc3829873.chain_2422,blat.proc3829873.chain_2424	5	STRG.6237.4,STRG.6237.5,blat.proc3829873.chain_2426	3
scaffold_14	spliced_intron	3160065	3160251	+	asmbl_11879,asmbl_11880,asmbl_11881,asmbl_11882,asmbl_11883,asmbl_11885,asmbl_11886,asmbl_11889,asmbl_11890,asmbl_11892,asmbl_11894,asmbl_11897,asmbl_11898	none	STRG.16893.1,STRG.16893.2,STRG.16893.3,Trinity_GG_9302_c0_g1_i11,blat.proc3829879.chain_1625,blat.proc3829879.chain_1626,blat.proc3829879.chain_1627,blat.proc3829879.chain_1629,blat.proc3829879.chain_1630,blat.proc3829879.chain_1631,blat.proc3829879.chain_1633,blat.proc3829879.chain_1636,blat.proc3829879.chain_1638,blat.proc3829879.chain_1639,blat.proc3829879.chain_1640	15	blat.proc3829879.chain_1632,blat.proc3829879.chain_1635	2
scaffold_4	alternate_exon	247166	247934	+	asmbl_42416	none	Trinity_GG_2300_c0_g1_i1,blat.proc3829873.chain_494	2	STRG.4120.2	1
scaffold_10	alt_acceptor	11918879	11918880	-	asmbl_3706,asmbl_3707	none	STRG.12818.1,blat.proc3829893.chain_1294,blat.proc3829893.chain_1295	3	STRG.12818.2	1
scaffold_10	skipped_exon	5009911	5010561	-	asmbl_3249,asmbl_3252	none	STRG.12317.2,blat.proc3829893.chain_747	2	blat.proc3829893.chain_749	1
scaffold_11	alternate_exon	13651391	13651573	-	asmbl_7128	none	STRG.14211.1,blat.proc3829893.chain_2583	2	STRG.14211.2,blat.proc3829893.chain_2581	2
scaffold_9	alternate_exon	11850209	11850460	-	asmbl_55304	none	blat.proc3829891.chain_3610	1	STRG.11492.1,STRG.11492.2,blat.proc3829891.chain_3609,blat.proc3829891.chain_3611	4
scaffold_11	alt_donor	6109992	6109993	-	asmbl_6671	none	STRG.13661.2,blat.proc3829893.chain_2070	2	blat.proc3829893.chain_2069	1
scaffold_19	retained_intron	2917569	2917600	+	asmbl_22092	none	STRG.21967.1	1	blat.proc3829881.chain_2862	1
scaffold_13	starts_in_intron	2320361	2320361	+	asmbl_10572	none	Trinity_GG_8511_c1_g1_i1,blat.proc3829879.chain_167	2	STRG.15543.2,STRG.15543.3,STRG.15543.4,STRG.15543.5,STRG.15543.6,STRG.15543.7,STRG.15543.8,STRG.15543.9,blat.proc3829879.chain_170,blat.proc3829879.chain_173	10
scaffold_21	spliced_intron	1657218	1657472	+	asmbl_28368,asmbl_28370,asmbl_28371,asmbl_28372	none	STRG.23807.1,Trinity_GG_13211_c0_g1_i2,Trinity_GG_13211_c0_g1_i3,Trinity_GG_13211_c0_g1_i4,Trinity_GG_13211_c0_g1_i7,blat.proc3829883.chain_988,blat.proc3829883.chain_989,blat.proc3829883.chain_992,blat.proc3829883.chain_993	9	Trinity_GG_13211_c0_g1_i1,Trinity_GG_13211_c0_g1_i6,blat.proc3829883.chain_990,blat.proc3829883.chain_991	4
scaffold_13	ends_in_intron	6296064	6296064	+	asmbl_10905	none	blat.proc3829879.chain_560	1	STRG.15910.1,STRG.15910.2,STRG.15910.3,blat.proc3829879.chain_559,blat.proc3829879.chain_561,blat.proc3829879.chain_562,blat.proc3829879.chain_563	7
scaffold_28	alternate_exon	4204544	4204882	+	asmbl_38213,asmbl_38214	none	STRG.29593.4,STRG.29593.5,Trinity_GG_16421_c1_g1_i1,blat.proc3829885.chain_2724,blat.proc3829885.chain_2729	5	STRG.29593.1	1
scaffold_21	alt_acceptor	10499244	10499245	-	asmbl_28079	none	STRG.24508.3	1	STRG.24508.1,STRG.24508.2,blat.proc3829899.chain_1641	3
scaffold_11	retained_intron	13256180	13256322	+	asmbl_6018	none	STRG.14184.1,blat.proc3829877.chain_2654	2	STRG.14184.2,blat.proc3829877.chain_2651	2
scaffold_1	retained_intron	14355333	14355698	-	asmbl_904	none	Trinity_GG_17550_c0_g1_i3,blat.proc3829887.chain_910	2	blat.proc3829887.chain_906,blat.proc3829887.chain_907,blat.proc3829887.chain_908,blat.proc3829887.chain_909	4
scaffold_2	alternate_exon	19088884	19089346	+	asmbl_25295	none	STRG.2773.1	1	STRG.2773.2,Trinity_GG_1555_c0_g1_i1,blat.proc3829871.chain_2932	3
scaffold_16	retained_intron	6195725	6195800	+	asmbl_17087,asmbl_17092,asmbl_17093	none	STRG.19373.4,blat.proc3829881.chain_129,blat.proc3829881.chain_130	3	STRG.19373.1,STRG.19373.2,STRG.19373.3,blat.proc3829881.chain_125,blat.proc3829881.chain_126,blat.proc3829881.chain_127,blat.proc3829881.chain_128,blat.proc3829881.chain_131	8
scaffold_6	alt_donor	3291018	3291019	+	asmbl_46771	none	STRG.7328.1,blat.proc3829873.chain_3455	2	blat.proc3829873.chain_3454	1
scaffold_27	alt_acceptor	9863290	9863291	+	asmbl_36486	none	STRG.29189.1,blat.proc3829885.chain_2328	2	STRG.29189.2,blat.proc3829885.chain_2327	2
scaffold_6	spliced_intron	2909054	2909178	+	asmbl_46733,asmbl_46734,asmbl_46735	none	STRG.7289.2,blat.proc3829873.chain_3369,blat.proc3829873.chain_3373	3	Trinity_GG_3977_c0_g1_i5,blat.proc3829873.chain_3368	2
scaffold_4	alt_acceptor	4173435	4173436	-	asmbl_41242	none	STRG.4332.2	1	STRG.4332.1,blat.proc3829889.chain_462	2
scaffold_13	starts_in_intron	7197306	7197306	-	asmbl_9825,asmbl_9826	none	STRG.16001.4,blat.proc3829895.chain_841	2	STRG.16001.1,STRG.16001.3,blat.proc3829895.chain_839,blat.proc3829895.chain_842,blat.proc3829895.chain_843	5
scaffold_15	alt_acceptor	14663439	14663440	+	asmbl_14641	none	STRG.18874.2,Trinity_GG_10354_c1_g1_i1,blat.proc3829879.chain_3461	3	STRG.18874.3	1
scaffold_16	retained_intron	14552847	14553116	+	asmbl_17490,asmbl_17491	none	Trinity_GG_10868_c0_g1_i3,Trinity_GG_10868_c0_g1_i4,blat.proc3829881.chain_688,blat.proc3829881.chain_689	4	STRG.19828.1,STRG.19828.2,STRG.19828.3,Trinity_GG_10868_c0_g1_i1,Trinity_GG_10868_c0_g1_i2,blat.proc3829881.chain_687,blat.proc3829881.chain_690	7
scaffold_19	alternate_exon	5639126	5643607	-	asmbl_21388,asmbl_21390	none	blat.proc3829897.chain_2910,blat.proc3829897.chain_2911	2	blat.proc3829897.chain_2914	1
scaffold_17	starts_in_intron	9452763	9452763	+	asmbl_18212,asmbl_18214	none	STRG.20557.2,Trinity_GG_11275_c0_g1_i3,blat.proc3829881.chain_1393	3	STRG.20557.1,Trinity_GG_11275_c0_g1_i11,Trinity_GG_11275_c0_g1_i4,Trinity_GG_11275_c0_g1_i8,blat.proc3829881.chain_1391,blat.proc3829881.chain_1392,blat.proc3829881.chain_1394	7
scaffold_15	spliced_intron	13327077	13327471	+	asmbl_14571	none	STRG.18763.1	1	Trinity_GG_10264_c0_g1_i2,Trinity_GG_10264_c0_g1_i4,Trinity_GG_10264_c0_g1_i6,blat.proc3829879.chain_3296,blat.proc3829879.chain_3297,blat.proc3829879.chain_3298,blat.proc3829879.chain_3299,blat.proc3829879.chain_3300,blat.proc3829879.chain_3301,blat.proc3829879.chain_3302,blat.proc3829879.chain_3303,blat.proc3829879.chain_3304	12
scaffold_15	retained_exon	6883556	6883630	-	asmbl_15275,asmbl_15276,asmbl_15279,asmbl_15281,asmbl_15283	none	STRG.18290.2,STRG.18290.3,STRG.18290.4,Trinity_GG_27246_c0_g1_i5,blat.proc3829895.chain_2934,blat.proc3829895.chain_2935,blat.proc3829895.chain_2936,blat.proc3829895.chain_2940	8	blat.proc3829895.chain_2933	1
scaffold_8	retained_intron	10793464	10793556	+	asmbl_52170	none	STRG.10300.1,blat.proc3829875.chain_2822	2	STRG.10300.2,blat.proc3829875.chain_2821	2
scaffold_21	retained_intron	11346303	11346361	-	asmbl_28148	none	STRG.24599.1	1	STRG.24599.2,STRG.24599.3	2
scaffold_12	spliced_intron	7643813	7644059	+	asmbl_8737	none	STRG.14830.1,Trinity_GG_8194_c0_g1_i1,blat.proc3829877.chain_3321	3	Trinity_GG_8194_c0_g1_i2,blat.proc3829877.chain_3322	2
scaffold_11	spliced_intron	10981968	10982289	-	asmbl_6989	none	STRG.14049.2	1	STRG.14049.1,Trinity_GG_24863_c0_g1_i1,blat.proc3829893.chain_2467	3
scaffold_20	alternate_exon	6974887	6975819	+	asmbl_25842	none	STRG.23248.1	1	STRG.23248.3	1
scaffold_7	alt_donor	12388104	12388105	-	asmbl_50020	none	blat.proc3829891.chain_1538	1	STRG.9328.1,blat.proc3829891.chain_1531,blat.proc3829891.chain_1532,blat.proc3829891.chain_1533,blat.proc3829891.chain_1535,blat.proc3829891.chain_1536	6
scaffold_10	alt_acceptor	6911500	6911501	+	asmbl_4533	none	STRG.12507.1	1	STRG.12507.2,blat.proc3829877.chain_1028	2
scaffold_7	alt_acceptor	2589308	2589309	+	asmbl_50536	none	blat.proc3829875.chain_1113	1	STRG.8685.2	1
scaffold_17	retained_intron	1054915	1055189	-	asmbl_18713	none	STRG.19935.2,blat.proc3829897.chain_821	2	STRG.19935.1,blat.proc3829897.chain_820	2
scaffold_14	retained_intron	218091	218231	-	asmbl_12790	none	blat.proc3829895.chain_1399	1	STRG.16705.1,STRG.16705.2,STRG.16705.3,STRG.16705.4,blat.proc3829895.chain_1395,blat.proc3829895.chain_1397,blat.proc3829895.chain_1398	7
scaffold_3	alt_donor	19407472	19407473	-	asmbl_39594,asmbl_39596	none	STRG.4084.1,blat.proc3829889.chain_155,blat.proc3829889.chain_157	3	STRG.4084.3,blat.proc3829889.chain_158	2
scaffold_2	starts_in_intron	16861388	16861388	+	asmbl_25184	none	Trinity_GG_1491_c0_g1_i2,blat.proc3829871.chain_2832	2	STRG.2599.1,STRG.2599.2,STRG.2599.3,blat.proc3829871.chain_2828,blat.proc3829871.chain_2829,blat.proc3829871.chain_2831	6
scaffold_17	alt_donor	684522	684523	+	asmbl_17686,asmbl_17689	none	STRG.19909.1,STRG.19909.2,blat.proc3829881.chain_718	3	STRG.19909.3,blat.proc3829881.chain_717	2
scaffold_14	ends_in_intron	13897928	13897928	-	asmbl_13646	none	Trinity_GG_26921_c0_g1_i4,blat.proc3829895.chain_2386	2	STRG.17652.2,blat.proc3829895.chain_2387	2
scaffold_13	alt_donor	15519346	15519347	+	asmbl_11497	none	STRG.16582.1	1	STRG.16582.2	1
scaffold_3	starts_in_intron	10277534	10277534	+	asmbl_40207	none	Trinity_GG_1953_c0_g1_i9,blat.proc3829871.chain_3620	2	STRG.3461.1,STRG.3461.2,STRG.3461.4,blat.proc3829871.chain_3621,blat.proc3829871.chain_3623,blat.proc3829871.chain_3625	6
scaffold_5	retained_intron	5060700	5061166	+	asmbl_44005	none	Trinity_GG_3232_c0_g1_i3,blat.proc3829873.chain_2051	2	STRG.5955.1,blat.proc3829873.chain_2052	2
scaffold_20	ends_in_intron	5546664	5546664	-	asmbl_26688,asmbl_26689,asmbl_26692	none	STRG.23165.1,blat.proc3829899.chain_204,blat.proc3829899.chain_205,blat.proc3829899.chain_206	4	blat.proc3829899.chain_207	1
scaffold_21	alt_donor	1302284	1302285	-	asmbl_27433,asmbl_27434	none	STRG.23801.1,STRG.23801.4	2	STRG.23801.2,STRG.23801.3,Trinity_GG_30279_c0_g1_i1,Trinity_GG_30279_c0_g1_i2,Trinity_GG_30279_c0_g1_i3,blat.proc3829899.chain_875,blat.proc3829899.chain_876,blat.proc3829899.chain_877	8
scaffold_7	alt_donor	12448127	12448128	-	asmbl_50038	none	blat.proc3829891.chain_1604	1	STRG.9342.3,STRG.9342.4,blat.proc3829891.chain_1605	3
scaffold_20	retained_intron	11671056	11671178	+	asmbl_26237	none	Trinity_GG_13100_c0_g1_i1,blat.proc3829883.chain_801	2	Trinity_GG_13100_c0_g1_i2,Trinity_GG_13100_c0_g1_i5,blat.proc3829883.chain_800,blat.proc3829883.chain_802	4
scaffold_22	starts_in_intron	10277056	10277056	-	asmbl_30364	none	blat.proc3829899.chain_2399	1	blat.proc3829899.chain_2400	1
scaffold_7	spliced_intron	12412941	12413129	+	asmbl_51137,asmbl_51138	none	STRG.9333.1,STRG.9333.2,Trinity_GG_5182_c0_g1_i1,blat.proc3829875.chain_1790	4	Trinity_GG_5182_c0_g1_i2,blat.proc3829875.chain_1791	2
scaffold_28	alternate_exon	2343049	2349349	-	asmbl_37369	none	blat.proc3829901.chain_2458	1	Trinity_GG_33454_c0_g1_i3,blat.proc3829901.chain_2457,blat.proc3829901.chain_2460	3
scaffold_6	starts_in_intron	797237	797237	-	asmbl_48012	none	blat.proc3829889.chain_3127	1	STRG.7133.1,STRG.7133.2,blat.proc3829889.chain_3126	3
scaffold_7	retained_exon	5483654	5483703	+	asmbl_50699	none	STRG.8872.2	1	STRG.8872.1,blat.proc3829875.chain_1291	2
scaffold_15	retained_intron	670210	670293	-	asmbl_14952	none	STRG.17917.2,blat.proc3829895.chain_2553	2	blat.proc3829895.chain_2554	1
scaffold_4	starts_in_intron	12728165	12728165	+	asmbl_43077	none	Trinity_GG_2747_c1_g1_i1,blat.proc3829873.chain_1263	2	STRG.4913.1,STRG.4913.2,blat.proc3829873.chain_1261,blat.proc3829873.chain_1262	4
scaffold_25	alt_acceptor	1296813	1296814	+	asmbl_33362	none	STRG.27156.1	1	blat.proc3829901.chain_462	1
scaffold_5	alt_acceptor	12540554	12540555	-	asmbl_45844	none	STRG.6491.1	1	STRG.6491.2,STRG.6491.3,blat.proc3829889.chain_2541	3
scaffold_15	starts_in_intron	370756	370756	-	asmbl_14930	none	blat.proc3829895.chain_2591	1	STRG.17876.1,blat.proc3829895.chain_2592,blat.proc3829895.chain_2593	3
scaffold_18	spliced_intron	7629659	7631646	-	asmbl_20000,asmbl_20002	none	STRG.21453.4,Trinity_GG_29021_c0_g1_i10,blat.proc3829897.chain_2313	3	STRG.21453.1,STRG.21453.5,blat.proc3829897.chain_2308,blat.proc3829897.chain_2309	4
scaffold_8	retained_intron	18248240	18248543	-	asmbl_53533,asmbl_53536,asmbl_53537,asmbl_53538	none	STRG.10723.4,blat.proc3829891.chain_2922,blat.proc3829891.chain_2923,blat.proc3829891.chain_2924	4	STRG.10723.5,blat.proc3829891.chain_2919,blat.proc3829891.chain_2921,blat.proc3829891.chain_2925	4
scaffold_9	alternate_exon	4204204	4206311	+	asmbl_53921	none	STRG.11013.4,blat.proc3829875.chain_3429	2	STRG.11013.2	1
scaffold_10	starts_in_intron	14550692	14550692	-	asmbl_3850	none	blat.proc3829893.chain_1449	1	STRG.12990.1,blat.proc3829893.chain_1448	2
scaffold_26	starts_in_intron	2820962	2820962	-	asmbl_34725	none	Trinity_GG_32673_c0_g2_i1,blat.proc3829901.chain_1198	2	STRG.27960.1,blat.proc3829901.chain_1197	2
scaffold_25	starts_in_intron	638055	638055	-	asmbl_33985	none	blat.proc3829901.chain_337	1	STRG.27095.3	1
scaffold_23	retained_intron	4900167	4900265	+	asmbl_30835	none	Trinity_GG_14276_c0_g1_i3,blat.proc3829883.chain_2746	2	STRG.25862.1,STRG.25862.2,STRG.25862.3,Trinity_GG_14276_c0_g1_i4,blat.proc3829883.chain_2747	5
scaffold_23	retained_intron	5709650	5709748	-	asmbl_31657	none	Trinity_GG_31520_c0_g1_i2,blat.proc3829899.chain_3046	2	STRG.25921.1	1
scaffold_3	retained_exon	6042295	6043267	-	asmbl_38834,asmbl_38837	none	STRG.3255.2,STRG.3255.7	2	STRG.3255.1	1
scaffold_13	spliced_intron	4601282	4601369	-	asmbl_9602,asmbl_9604,asmbl_9605,asmbl_9606	none	STRG.15781.1,STRG.15781.2,blat.proc3829895.chain_529,blat.proc3829895.chain_531,blat.proc3829895.chain_533	5	Trinity_GG_25880_c0_g1_i4,blat.proc3829895.chain_527	2
scaffold_13	starts_in_intron	11566839	11566839	+	asmbl_11263	none	Trinity_GG_8959_c0_g1_i1,blat.proc3829879.chain_1042	2	STRG.16291.1,blat.proc3829879.chain_1043	2
scaffold_27	starts_in_intron	627409	627409	-	asmbl_36656	none	Trinity_GG_32986_c0_g1_i5,blat.proc3829901.chain_1751	2	STRG.28563.1,STRG.28563.2,STRG.28563.4,Trinity_GG_32986_c0_g1_i1,blat.proc3829901.chain_1749,blat.proc3829901.chain_1752,blat.proc3829901.chain_1753	7
scaffold_12	retained_exon	7617818	7617898	-	asmbl_7730,asmbl_7731,asmbl_7733,asmbl_7736	none	STRG.14826.1,STRG.14826.4,STRG.14826.5,blat.proc3829893.chain_3214,blat.proc3829893.chain_3215	5	STRG.14826.2,STRG.14826.3,STRG.14826.6	3
scaffold_15	spliced_intron	1504460	1504656	-	asmbl_14968	none	STRG.17945.2,blat.proc3829895.chain_2658	2	Trinity_GG_27097_c0_g1_i2,Trinity_GG_27097_c0_g1_i5,blat.proc3829895.chain_2659,blat.proc3829895.chain_2660	4
scaffold_14	alt_acceptor	15724882	15724883	-	asmbl_13723	none	STRG.17797.1,blat.proc3829895.chain_2451	2	STRG.17797.2,STRG.17797.3	2
scaffold_3030	retained_intron	488	641	-	asmbl_40863	none	STRG.30790.1,Trinity_GG_34275_c0_g1_i1,blat.proc3829901.chain_3713	3	STRG.30790.2	1
scaffold_8	retained_exon	9129085	9129248	-	asmbl_53003	none	STRG.10161.1	1	STRG.10161.3,STRG.10161.4	2
scaffold_6	alt_donor	4383271	4383272	-	asmbl_48258	none	STRG.7407.1,blat.proc3829889.chain_3385	2	STRG.7407.2	1
scaffold_7	alt_acceptor	4498642	4498643	-	asmbl_49677,asmbl_49678,asmbl_49679,asmbl_49680	none	STRG.8813.1,STRG.8813.2,Trinity_GG_22050_c0_g1_i4,blat.proc3829891.chain_1190,blat.proc3829891.chain_1191,blat.proc3829891.chain_1193	6	blat.proc3829891.chain_1192	1
scaffold_7	starts_in_intron	8709402	8709402	+	asmbl_50927	none	STRG.9096.2,blat.proc3829875.chain_1545	2	STRG.9096.1,Trinity_GG_5043_c0_g1_i1,blat.proc3829875.chain_1544	3
scaffold_1445	spliced_intron	333	442	+	asmbl_13870	none	STRG.30579.2	1	STRG.30579.1,Trinity_GG_16902_c0_g1_i1,blat.proc3829885.chain_3526	3
scaffold_20	starts_in_intron	1574601	1574601	+	asmbl_25584	none	Trinity_GG_12574_c0_g1_i1,blat.proc3829881.chain_3700	2	STRG.22871.1,STRG.22871.2,blat.proc3829881.chain_3698	3
scaffold_19	ends_in_intron	3668381	3668381	-	asmbl_21329	none	STRG.22034.4	1	STRG.22034.1,STRG.22034.2,STRG.22034.3,Trinity_GG_29269_c0_g1_i1,Trinity_GG_29269_c0_g1_i2,Trinity_GG_29269_c0_g1_i5,Trinity_GG_29269_c0_g1_i6,blat.proc3829897.chain_2739,blat.proc3829897.chain_2743,blat.proc3829897.chain_2744,blat.proc3829897.chain_2745	11
scaffold_17	starts_in_intron	8220043	8220043	+	asmbl_18082	none	STRG.20435.2	1	STRG.20435.1,blat.proc3829881.chain_1196,blat.proc3829881.chain_1198,blat.proc3829881.chain_1199,blat.proc3829881.chain_1200,blat.proc3829881.chain_1203	6
scaffold_10	spliced_intron	1794196	1794683	+	asmbl_4241	none	blat.proc3829877.chain_739	1	Trinity_GG_6693_c0_g1_i1,blat.proc3829877.chain_740	2
scaffold_22	retained_intron	26600	26679	+	asmbl_29092	none	STRG.24646.2,Trinity_GG_13608_c0_g1_i1,blat.proc3829883.chain_1666	3	STRG.24646.1,Trinity_GG_13608_c0_g1_i2,Trinity_GG_13608_c0_g1_i4,blat.proc3829883.chain_1665,blat.proc3829883.chain_1667	5
scaffold_7	alt_acceptor	1219872	1219873	+	asmbl_50464	none	STRG.8618.1,Trinity_GG_4734_c0_g1_i4	2	STRG.8618.2,Trinity_GG_4734_c0_g1_i2	2
scaffold_9	alternate_exon	647870	648036	+	asmbl_53767	none	STRG.10787.1	1	STRG.10787.2,STRG.10787.4,Trinity_GG_5998_c1_g1_i1,blat.proc3829875.chain_3294,blat.proc3829875.chain_3295,blat.proc3829875.chain_3296	6
scaffold_13	ends_in_intron	5703158	5703158	-	asmbl_9671	none	Trinity_GG_25916_c0_g1_i9,blat.proc3829895.chain_594	2	STRG.15859.1,STRG.15859.2,blat.proc3829895.chain_597,blat.proc3829895.chain_598	4
scaffold_10	ends_in_intron	6733403	6733403	-	asmbl_3414	none	STRG.12490.2,blat.proc3829893.chain_967	2	STRG.12490.1	1
scaffold_13	retained_intron	3736104	3736197	+	asmbl_10715	none	Trinity_GG_8631_c0_g1_i10,blat.proc3829879.chain_388	2	STRG.15686.1,STRG.15686.2,STRG.15686.3,Trinity_GG_8631_c0_g1_i4,Trinity_GG_8631_c0_g1_i6,Trinity_GG_8631_c0_g1_i8,blat.proc3829879.chain_389,blat.proc3829879.chain_390,blat.proc3829879.chain_391,blat.proc3829879.chain_393,blat.proc3829879.chain_394,blat.proc3829879.chain_395,blat.proc3829879.chain_396	13
scaffold_1	retained_exon	11821553	11821589	+	asmbl_2137	none	STRG.801.2,Trinity_GG_509_c0_g1_i1,blat.proc3829871.chain_911	3	STRG.801.1,Trinity_GG_509_c0_g1_i3,blat.proc3829871.chain_909	3
scaffold_10	retained_exon	5848545	5848715	-	asmbl_3307,asmbl_3308	none	STRG.12395.2,STRG.12395.3,blat.proc3829893.chain_857,blat.proc3829893.chain_858,blat.proc3829893.chain_859	5	STRG.12395.1	1
scaffold_3	ends_in_intron	14423226	14423226	+	asmbl_40485	none	blat.proc3829873.chain_232	1	STRG.3785.1,STRG.3785.2,STRG.3785.3,Trinity_GG_2146_c0_g1_i1,Trinity_GG_2146_c0_g1_i2,Trinity_GG_2146_c0_g1_i3,Trinity_GG_2146_c0_g1_i5,blat.proc3829873.chain_228,blat.proc3829873.chain_229,blat.proc3829873.chain_230,blat.proc3829873.chain_231	11
scaffold_19	ends_in_intron	13217339	13217339	-	asmbl_21829	none	Trinity_GG_29598_c1_g1_i3,blat.proc3829897.chain_3369	2	STRG.22682.1,STRG.22682.3,Trinity_GG_29598_c1_g1_i10,Trinity_GG_29598_c1_g1_i2,Trinity_GG_29598_c1_g1_i4,Trinity_GG_29598_c1_g1_i7,blat.proc3829897.chain_3359,blat.proc3829897.chain_3360,blat.proc3829897.chain_3361,blat.proc3829897.chain_3362,blat.proc3829897.chain_3363,blat.proc3829897.chain_3364,blat.proc3829897.chain_3365,blat.proc3829897.chain_3366,blat.proc3829897.chain_3367,blat.proc3829897.chain_3368,blat.proc3829897.chain_3370	17
scaffold_16	starts_in_intron	13018032	13018032	-	asmbl_16579	none	STRG.19751.1,blat.proc3829897.chain_651	2	STRG.19751.2	1
scaffold_6	retained_intron	13726449	13726589	-	asmbl_48882	none	STRG.8113.2,blat.proc3829891.chain_427	2	STRG.8113.1,Trinity_GG_21627_c0_g1_i1,blat.proc3829891.chain_428	3
scaffold_13	alt_acceptor	89899	89900	+	asmbl_10426,asmbl_10428,asmbl_10429,asmbl_10430	none	STRG.15412.1,STRG.15412.2,STRG.15412.3,blat.proc3829879.chain_80,blat.proc3829879.chain_81	5	STRG.15412.4	1
scaffold_16	alt_acceptor	10448351	10448352	+	asmbl_17340	none	STRG.19602.2	1	STRG.19602.5	1
scaffold_3	spliced_intron	5774893	5775417	-	asmbl_38818,asmbl_38819	none	STRG.3244.3,blat.proc3829887.chain_2961	2	STRG.3244.1,STRG.3244.2,STRG.3244.4,blat.proc3829887.chain_2960,blat.proc3829887.chain_2962	5
scaffold_13	starts_in_intron	10033777	10033777	+	asmbl_11214	none	Trinity_GG_8909_c0_g1_i2,blat.proc3829879.chain_942	2	STRG.16226.1,blat.proc3829879.chain_941	2
scaffold_15	ends_in_intron	12040697	12040697	+	asmbl_14462	none	blat.proc3829879.chain_3221	1	STRG.18655.1,STRG.18655.2,blat.proc3829879.chain_3223	3
scaffold_17	spliced_intron	14546159	14546293	+	asmbl_18531	none	STRG.20918.5	1	STRG.20918.2,Trinity_GG_11505_c0_g1_i1,Trinity_GG_11505_c0_g1_i2,blat.proc3829881.chain_1765	4
scaffold_10	ends_in_intron	3714552	3714552	+	asmbl_4341	none	blat.proc3829877.chain_864	1	STRG.12190.1,STRG.12190.2,blat.proc3829877.chain_863	3
scaffold_11	alt_donor	8790288	8790289	-	asmbl_6860	none	STRG.13891.2	1	STRG.13891.3	1
scaffold_17	starts_in_intron	5083741	5083741	-	asmbl_18951	none	Trinity_GG_28387_c0_g1_i2	1	STRG.20223.1	1
scaffold_20	spliced_intron	7910387	7910642	-	asmbl_26867	none	STRG.23330.2,blat.proc3829899.chain_341	2	STRG.23330.1,Trinity_GG_30019_c0_g1_i2,blat.proc3829899.chain_342	3
scaffold_23	alt_donor	6988879	6988880	-	asmbl_31716,asmbl_31717	none	STRG.26001.1,STRG.26001.2,blat.proc3829899.chain_3072,blat.proc3829899.chain_3073	4	blat.proc3829899.chain_3074	1
scaffold_21	retained_intron	255225	255467	-	asmbl_27312	none	Trinity_GG_30232_c0_g1_i2,blat.proc3829899.chain_784,blat.proc3829899.chain_789	3	STRG.23718.1,STRG.23718.2,STRG.23718.3,STRG.23718.4,STRG.23718.5,STRG.23718.6,STRG.23718.7,STRG.23718.8,blat.proc3829899.chain_781,blat.proc3829899.chain_782,blat.proc3829899.chain_785,blat.proc3829899.chain_786,blat.proc3829899.chain_787,blat.proc3829899.chain_788,blat.proc3829899.chain_791,blat.proc3829899.chain_792,blat.proc3829899.chain_793,blat.proc3829899.chain_794	18
scaffold_16	alt_donor	9204501	9204502	-	asmbl_16449,asmbl_16451	none	STRG.19508.1,blat.proc3829897.chain_490	2	blat.proc3829897.chain_489	1
scaffold_16	alt_acceptor	11291582	11291583	+	asmbl_17374	none	STRG.19649.1,blat.proc3829881.chain_537	2	STRG.19649.2,STRG.19649.3	2
scaffold_10	retained_exon	11596017	11596274	+	asmbl_4750	none	STRG.12807.1	1	STRG.12807.2	1
scaffold_13	ends_in_intron	4248155	4248155	-	asmbl_9580	none	Trinity_GG_25850_c1_g1_i1,blat.proc3829895.chain_481	2	STRG.15737.1,STRG.15737.2,STRG.15737.3,STRG.15737.4,STRG.15737.5,blat.proc3829895.chain_482	6
scaffold_20	starts_in_intron	7474844	7474844	-	asmbl_26828,asmbl_26829,asmbl_26831	none	blat.proc3829899.chain_391,blat.proc3829899.chain_394,blat.proc3829899.chain_401	3	STRG.23308.1,blat.proc3829899.chain_389,blat.proc3829899.chain_390,blat.proc3829899.chain_393,blat.proc3829899.chain_396,blat.proc3829899.chain_399	6
scaffold_5	starts_in_intron	11964818	11964818	+	asmbl_44450	none	Trinity_GG_3511_c0_g1_i1,blat.proc3829873.chain_2592	2	STRG.6438.1,Trinity_GG_3511_c0_g1_i2,blat.proc3829873.chain_2591	3
scaffold_14	retained_intron	7495217	7495629	+	asmbl_12146	none	STRG.17177.1,blat.proc3829879.chain_1838	2	STRG.17177.2,Trinity_GG_9413_c1_g1_i2,blat.proc3829879.chain_1836	3
scaffold_1	starts_in_intron	11551676	11551676	-	asmbl_637	none	STRG.762.1,Trinity_GG_17392_c0_g1_i3,blat.proc3829887.chain_606	3	STRG.762.2	1
scaffold_4	skipped_exon	16433810	16434730	-	asmbl_41919	none	STRG.5221.1	1	STRG.5221.2,STRG.5221.3	2
scaffold_17	alternate_exon	9596128	9596163	-	asmbl_19229	none	STRG.20568.3	1	STRG.20568.2,blat.proc3829897.chain_1518	2
scaffold_1	alternate_exon	15887890	15888046	-	asmbl_969	none	STRG.1116.2	1	STRG.1116.1,blat.proc3829887.chain_1018,blat.proc3829887.chain_1019	3
scaffold_20	alt_donor	1625626	1625627	-	asmbl_26523	none	STRG.22888.3	1	STRG.22888.1,STRG.22888.2	2
scaffold_4	spliced_intron	4095323	4095811	+	asmbl_42543,asmbl_42547	none	STRG.4313.4,blat.proc3829873.chain_631	2	STRG.4313.2,blat.proc3829873.chain_632,blat.proc3829873.chain_634	3
scaffold_2	alt_donor	16292142	16292143	+	asmbl_25144	none	STRG.2561.1,blat.proc3829871.chain_2769	2	STRG.2561.2,blat.proc3829871.chain_2768	2
scaffold_8	alt_donor	11845043	11845044	+	asmbl_52269,asmbl_52270,asmbl_52276,asmbl_52277,asmbl_52278,asmbl_52279,asmbl_52280,asmbl_52281,asmbl_52282,asmbl_52283,asmbl_52284	none	STRG.10382.2,STRG.10382.3,blat.proc3829875.chain_2967,blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2975,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978,blat.proc3829875.chain_2979	12	blat.proc3829875.chain_2982	1
scaffold_11	retained_exon	14532209	14532249	+	asmbl_6070	none	STRG.14239.4	1	STRG.14239.1,STRG.14239.2,STRG.14239.3,Trinity_GG_7860_c0_g1_i2,Trinity_GG_7860_c0_g1_i6,Trinity_GG_7860_c0_g1_i7,blat.proc3829877.chain_2744,blat.proc3829877.chain_2745,blat.proc3829877.chain_2746,blat.proc3829877.chain_2747	10
scaffold_20	spliced_intron	7268277	7268638	+	asmbl_25870	none	STRG.23283.2,blat.proc3829883.chain_359	2	STRG.23283.1,STRG.23283.3,blat.proc3829883.chain_360	3
scaffold_14	alt_acceptor	7259015	7259016	-	asmbl_13165	none	STRG.17147.2	1	STRG.17147.1	1
scaffold_13	alternate_exon	8098891	8100007	+	asmbl_11082	none	STRG.16076.1,Trinity_GG_8832_c0_g1_i1,Trinity_GG_8832_c2_g1_i1,blat.proc3829879.chain_795,blat.proc3829879.chain_797	5	STRG.16076.2,blat.proc3829879.chain_796	2
scaffold_16	alternate_exon	4064454	4064713	-	asmbl_16220	none	STRG.19211.2,blat.proc3829897.chain_228	2	STRG.19211.1,blat.proc3829897.chain_229	2
scaffold_7	spliced_intron	13809676	13810427	+	asmbl_51259	none	STRG.9479.4	1	STRG.9479.2,Trinity_GG_5246_c2_g1_i1,blat.proc3829875.chain_1904	3
scaffold_3	alt_acceptor	14017039	14017040	+	asmbl_40452	none	STRG.3748.2,Trinity_GG_2102_c0_g1_i1,blat.proc3829873.chain_154	3	STRG.3748.1,Trinity_GG_2102_c0_g1_i2,blat.proc3829873.chain_153	3
scaffold_13	retained_intron	16048875	16048994	+	asmbl_11524	none	STRG.16628.3	1	STRG.16628.2	1
scaffold_13	retained_intron	4462344	4462579	-	asmbl_9595	none	Trinity_GG_25865_c1_g1_i1,blat.proc3829895.chain_503	2	STRG.15756.1,STRG.15756.2,blat.proc3829895.chain_504	3
scaffold_1517	alternate_exon	673	725	-	asmbl_15969	none	STRG.30587.2	1	STRG.30587.1	1
scaffold_11	alt_donor	9829435	9829436	+	asmbl_5868,asmbl_5873	none	STRG.13996.2,blat.proc3829877.chain_2508,blat.proc3829877.chain_2512	3	STRG.13996.4,blat.proc3829877.chain_2506,blat.proc3829877.chain_2514	3
scaffold_21	alternate_exon	9925221	9926567	-	asmbl_28010	none	STRG.24446.2,blat.proc3829899.chain_1515	2	STRG.24446.5	1
scaffold_5	starts_in_intron	10170430	10170430	+	asmbl_44333	none	blat.proc3829873.chain_2378	1	STRG.6310.1,blat.proc3829873.chain_2380	2
scaffold_13	alt_donor	9338325	9338326	-	asmbl_9982,asmbl_9984,asmbl_9985	none	STRG.16186.1,STRG.16186.2,STRG.16186.4,blat.proc3829895.chain_952	4	STRG.16186.3,blat.proc3829895.chain_954	2
scaffold_27	alt_acceptor	1044481	1044482	+	asmbl_35945	none	STRG.28585.2	1	STRG.28585.1	1
scaffold_5	alt_donor	10600132	10600133	-	asmbl_45755	none	STRG.6336.2,blat.proc3829889.chain_2435	2	STRG.6336.1,STRG.6336.3,blat.proc3829889.chain_2433,blat.proc3829889.chain_2434	4
scaffold_6	starts_in_intron	8561584	8561584	-	asmbl_48501,asmbl_48503	none	blat.proc3829889.chain_3686,blat.proc3829889.chain_3687	2	STRG.7729.1	1
scaffold_7	starts_in_intron	3334431	3334431	-	asmbl_49601	none	STRG.8726.1	1	STRG.8726.2,blat.proc3829891.chain_1081	2
scaffold_14	ends_in_intron	6878523	6878523	-	asmbl_13148	none	Trinity_GG_26577_c0_g1_i1,blat.proc3829895.chain_1752	2	STRG.17111.1,Trinity_GG_26577_c0_g1_i2,blat.proc3829895.chain_1751	3
scaffold_3	ends_in_intron	19406434	19406434	-	asmbl_39597	none	STRG.4084.3	1	STRG.4084.1,blat.proc3829889.chain_157,blat.proc3829889.chain_158	3
scaffold_7	skipped_exon	12268983	12270353	+	asmbl_51116	none	STRG.9313.3	1	STRG.9313.1,STRG.9313.2,STRG.9313.5,Trinity_GG_5141_c0_g1_i1,Trinity_GG_5141_c0_g1_i2,blat.proc3829875.chain_1714,blat.proc3829875.chain_1716	7
scaffold_1	ends_in_intron	20348474	20348474	+	asmbl_2610,asmbl_2611,asmbl_2612,asmbl_2614,asmbl_2615	none	blat.proc3829871.chain_1448,blat.proc3829871.chain_1450,blat.proc3829871.chain_1451,blat.proc3829871.chain_1453,blat.proc3829871.chain_1454	5	STRG.1398.3,STRG.1398.5	2
scaffold_22	retained_exon	691600	691681	+	asmbl_29176,asmbl_29177	none	STRG.24705.1,STRG.24705.2,Trinity_GG_13663_c0_g1_i1,Trinity_GG_13663_c0_g1_i3,blat.proc3829883.chain_1766	5	STRG.24705.3	1
scaffold_13	alt_donor	10222022	10222023	-	asmbl_10013	none	STRG.16233.2	1	STRG.16233.1,blat.proc3829895.chain_1005	2
scaffold_11	alt_acceptor	8078023	8078024	-	asmbl_6805,asmbl_6816	none	STRG.13802.2,STRG.13802.5	2	STRG.13802.3,STRG.13802.4,Trinity_GG_24711_c0_g1_i17,Trinity_GG_24711_c0_g1_i18,Trinity_GG_24711_c0_g1_i2,Trinity_GG_24711_c0_g1_i3,Trinity_GG_24711_c0_g1_i5,Trinity_GG_24711_c0_g1_i8,blat.proc3829893.chain_2197,blat.proc3829893.chain_2198,blat.proc3829893.chain_2200,blat.proc3829893.chain_2201,blat.proc3829893.chain_2204,blat.proc3829893.chain_2205,blat.proc3829893.chain_2206,blat.proc3829893.chain_2209,blat.proc3829893.chain_2211	17
scaffold_6	starts_in_intron	14037970	14037970	-	asmbl_48919	none	Trinity_GG_21651_c0_g1_i3,blat.proc3829891.chain_476	2	STRG.8154.1	1
scaffold_9	retained_intron	13368752	13368963	-	asmbl_55406	none	Trinity_GG_23423_c0_g1_i2,blat.proc3829891.chain_3739	2	STRG.11627.1,blat.proc3829891.chain_3740	2
scaffold_17	retained_exon	544862	544946	+	asmbl_17678	none	STRG.19891.1,Trinity_GG_10901_c0_g1_i2,blat.proc3829881.chain_737	3	STRG.19891.3	1
scaffold_13	alternate_exon	366932	367464	-	asmbl_9287	none	STRG.15426.3	1	Trinity_GG_25666_c0_g1_i3,blat.proc3829895.chain_165	2
scaffold_26	starts_in_intron	6023982	6023982	+	asmbl_35598	none	Trinity_GG_15653_c0_g1_i1,blat.proc3829885.chain_1328	2	STRG.28301.1,blat.proc3829885.chain_1329	2
scaffold_14	spliced_intron	10479149	10479292	+	asmbl_12305	none	blat.proc3829879.chain_2091	1	STRG.17382.2,blat.proc3829879.chain_2092	2
scaffold_12	starts_in_intron	9857556	9857556	+	asmbl_8849	none	Trinity_GG_8248_c0_g1_i3,blat.proc3829877.chain_3426	2	STRG.14940.1,blat.proc3829877.chain_3424	2
scaffold_2	retained_intron	956971	957115	-	asmbl_22850	none	Trinity_GG_17872_c0_g1_i2,blat.proc3829887.chain_1426	2	STRG.1572.1,STRG.1572.2,blat.proc3829887.chain_1425	3
scaffold_27	alt_acceptor	7522110	7522111	+	asmbl_36422	none	STRG.29096.3	1	STRG.29096.1,STRG.29096.2,blat.proc3829885.chain_2227	3
scaffold_2	spliced_intron	4579215	4579828	+	asmbl_24378,asmbl_24384,asmbl_24386	none	STRG.1884.1,STRG.1884.2,STRG.1884.3,blat.proc3829871.chain_1916	4	Trinity_GG_1044_c1_g1_i4,blat.proc3829871.chain_1915,blat.proc3829871.chain_1917	3
scaffold_4	alt_donor	16481292	16481293	-	asmbl_41927	none	STRG.5226.3,blat.proc3829889.chain_1292	2	STRG.5226.1,blat.proc3829889.chain_1289,blat.proc3829889.chain_1290	3
scaffold_13	alt_acceptor	9990675	9990676	+	asmbl_11210	none	STRG.16225.2	1	STRG.16225.1,blat.proc3829879.chain_924	2
scaffold_14	alt_acceptor	3157078	3157079	+	asmbl_11886,asmbl_11892,asmbl_11894	none	blat.proc3829879.chain_1625,blat.proc3829879.chain_1629,blat.proc3829879.chain_1639	3	STRG.16893.1,STRG.16893.2,STRG.16893.3,blat.proc3829879.chain_1626,blat.proc3829879.chain_1628,blat.proc3829879.chain_1630,blat.proc3829879.chain_1631,blat.proc3829879.chain_1632,blat.proc3829879.chain_1633,blat.proc3829879.chain_1634,blat.proc3829879.chain_1635,blat.proc3829879.chain_1636,blat.proc3829879.chain_1637,blat.proc3829879.chain_1638,blat.proc3829879.chain_1640	15
scaffold_20	ends_in_intron	1095421	1095421	-	asmbl_26466	none	Trinity_GG_29736_c1_g1_i1,blat.proc3829897.chain_3587	2	STRG.22803.1,Trinity_GG_29736_c0_g1_i2,blat.proc3829897.chain_3585,blat.proc3829897.chain_3586	4
scaffold_11	alt_donor	13247273	13247274	+	asmbl_6016	none	blat.proc3829877.chain_2659	1	blat.proc3829877.chain_2657	1
scaffold_15	spliced_intron	2603301	2603322	+	asmbl_14012	none	STRG.18026.3	1	STRG.18026.1,STRG.18026.2,Trinity_GG_9909_c0_g1_i1,blat.proc3829879.chain_2687	4
scaffold_5	spliced_intron	1504160	1504271	-	asmbl_45244	none	STRG.5702.1,blat.proc3829873.chain_1865,blat.proc3829889.chain_1826	3	STRG.5702.2	1
scaffold_12	alt_acceptor	13110266	13110267	-	asmbl_8047	none	STRG.15185.2,Trinity_GG_25499_c0_g1_i3,blat.proc3829893.chain_3594,blat.proc3829893.chain_3596	4	STRG.15185.1	1
scaffold_10	alt_acceptor	11604703	11604704	+	asmbl_4749,asmbl_4751,asmbl_4752,asmbl_4753	none	STRG.12807.2,STRG.12807.5,blat.proc3829877.chain_1379,blat.proc3829877.chain_1382	4	STRG.12807.1,blat.proc3829877.chain_1378,blat.proc3829877.chain_1380,blat.proc3829877.chain_1381,blat.proc3829877.chain_1383,blat.proc3829877.chain_1384	6
scaffold_15	alternate_exon	4131491	4133119	-	asmbl_15138	none	STRG.18148.1	1	Trinity_GG_27222_c0_g1_i3,blat.proc3829895.chain_2888	2
scaffold_14	alt_acceptor	7443738	7443739	-	asmbl_13188	none	STRG.17168.1	1	STRG.17168.2,Trinity_GG_26575_c0_g1_i1,Trinity_GG_26575_c0_g1_i2,blat.proc3829895.chain_1747,blat.proc3829895.chain_1748	5
scaffold_10	alt_acceptor	8335733	8335734	+	asmbl_4592	none	STRG.12585.1,Trinity_GG_6944_c0_g1_i2,blat.proc3829877.chain_1165	3	STRG.12585.2	1
scaffold_9	alt_acceptor	16631184	16631185	+	asmbl_54591	none	STRG.11796.2,Trinity_GG_6584_c0_g1_i1,blat.proc3829877.chain_548	3	STRG.11796.1,Trinity_GG_6584_c0_g1_i2,blat.proc3829877.chain_549	3
scaffold_19	retained_intron	8753361	8753752	+	asmbl_22354	none	blat.proc3829881.chain_3259	1	STRG.22316.1,blat.proc3829881.chain_3257	2
scaffold_2	retained_exon	1595546	1595634	+	asmbl_24233,asmbl_24236,asmbl_24237	none	STRG.1628.1,STRG.1628.2,STRG.1628.3,blat.proc3829871.chain_1668	4	STRG.1628.4,blat.proc3829871.chain_1669	2
scaffold_20	alt_acceptor	11099034	11099035	+	asmbl_26165	none	STRG.23614.1,blat.proc3829883.chain_757	2	blat.proc3829883.chain_758	1
scaffold_19	spliced_intron	96182	96601	-	asmbl_21186	none	STRG.21815.1,Trinity_GG_29184_c0_g1_i2,blat.proc3829897.chain_2589	3	Trinity_GG_29184_c0_g1_i3,blat.proc3829897.chain_2591	2
scaffold_3	retained_intron	17338585	17338883	-	asmbl_39487	none	STRG.3961.1,Trinity_GG_19188_c0_g1_i1,blat.proc3829887.chain_3741	3	STRG.3961.2,blat.proc3829887.chain_3740	2
scaffold_15	retained_intron	15409791	15409903	+	asmbl_14720,asmbl_14724,asmbl_14726	none	STRG.18921.4,STRG.18921.6,blat.proc3829879.chain_3516	3	STRG.18921.9	1
scaffold_6	ends_in_intron	5192714	5192714	+	asmbl_46866	none	STRG.7489.1	1	STRG.7489.2,STRG.7489.3,STRG.7489.4,Trinity_GG_4091_c0_g1_i1,Trinity_GG_4091_c0_g1_i10,blat.proc3829873.chain_3580,blat.proc3829873.chain_3581,blat.proc3829873.chain_3583,blat.proc3829873.chain_3585,blat.proc3829873.chain_3587	10
scaffold_2957	ends_in_intron	560	560	-	asmbl_38609	none	Trinity_GG_24526_c0_g1_i2,blat.proc3829893.chain_1885,blat.proc3829901.chain_3708	3	STRG.30782.1,blat.proc3829901.chain_3707	2
scaffold_4	alternate_exon	19605161	19605272	-	asmbl_42222	none	STRG.5547.4	1	STRG.5547.1,STRG.5547.2	2
scaffold_18	spliced_intron	1382455	1382684	-	asmbl_19647	none	STRG.21013.1,blat.proc3829897.chain_1921	2	STRG.21013.2,blat.proc3829897.chain_1922	2
scaffold_8	retained_exon	17974550	17974661	-	asmbl_53506	none	STRG.10695.1,Trinity_GG_22958_c0_g1_i1,blat.proc3829891.chain_2852	3	STRG.10695.2	1
scaffold_26	ends_in_intron	9316161	9316161	+	asmbl_35745	none	blat.proc3829885.chain_1517	1	STRG.28479.1,STRG.28479.2,STRG.28479.3,blat.proc3829885.chain_1515,blat.proc3829885.chain_1518,blat.proc3829885.chain_1519,blat.proc3829885.chain_1520	7
scaffold_14	alternate_exon	1602821	1603512	-	asmbl_12880	none	STRG.16790.1,Trinity_GG_26418_c0_g1_i5,blat.proc3829895.chain_1497	3	STRG.16790.2,Trinity_GG_26418_c0_g1_i1,Trinity_GG_26418_c0_g1_i3,blat.proc3829895.chain_1495,blat.proc3829895.chain_1496	5
scaffold_7	spliced_intron	9149763	9149863	+	asmbl_50954	none	STRG.9122.1	1	Trinity_GG_5028_c0_g1_i1,blat.proc3829875.chain_1517	2
scaffold_25	ends_in_intron	3827864	3827864	-	asmbl_34148	none	Trinity_GG_32308_c0_g1_i1,blat.proc3829901.chain_619	2	STRG.27322.2,Trinity_GG_32308_c0_g1_i2,blat.proc3829901.chain_618	3
scaffold_25	ends_in_intron	8706567	8706567	+	asmbl_33752,asmbl_33753	none	blat.proc3829885.chain_691,blat.proc3829885.chain_697,blat.proc3829885.chain_702	3	STRG.27679.1,STRG.27679.3,Trinity_GG_15273_c0_g1_i6,blat.proc3829885.chain_698,blat.proc3829885.chain_700,blat.proc3829885.chain_701	6
scaffold_27	retained_intron	2536912	2537126	+	asmbl_36048	none	blat.proc3829885.chain_1762	1	STRG.28704.1,blat.proc3829885.chain_1763	2
scaffold_4	retained_intron	16480998	16481293	-	asmbl_41928,asmbl_41930	none	STRG.5226.2,Trinity_GG_19942_c0_g2_i2,blat.proc3829889.chain_1293,blat.proc3829889.chain_1294	4	STRG.5226.3,blat.proc3829889.chain_1292	2
scaffold_4	alt_donor	13195544	13195545	-	asmbl_41729	none	STRG.4959.3,blat.proc3829889.chain_1016	2	STRG.4959.1,STRG.4959.2,blat.proc3829889.chain_1014,blat.proc3829889.chain_1015	4
scaffold_20	spliced_intron	5845427	5845613	-	asmbl_26698	none	STRG.23171.1,blat.proc3829899.chain_193	2	STRG.23171.2,Trinity_GG_29935_c0_g1_i3,blat.proc3829899.chain_195	3
scaffold_15	alt_acceptor	14327865	14327866	-	asmbl_15729	none	STRG.18855.3	1	blat.proc3829895.chain_3603	1
scaffold_8	starts_in_intron	17595695	17595695	+	asmbl_52484	none	blat.proc3829875.chain_3170	1	STRG.10670.1,blat.proc3829875.chain_3171	2
scaffold_506	alt_donor	2394	2395	+	asmbl_46457,asmbl_46458	none	blat.proc3829885.chain_3371,blat.proc3829885.chain_3373	2	STRG.30329.1,STRG.30329.2,blat.proc3829885.chain_3372,blat.proc3829885.chain_3374	4
scaffold_16	alt_acceptor	13980979	13980980	-	asmbl_16603	none	STRG.19783.1,Trinity_GG_28094_c0_g1_i1,blat.proc3829897.chain_720	3	STRG.19783.2	1
scaffold_19	ends_in_intron	8329511	8329511	+	asmbl_22317	none	blat.proc3829881.chain_3189	1	STRG.22279.1,blat.proc3829881.chain_3188	2
scaffold_4	alt_donor	5231399	5231400	-	asmbl_41309,asmbl_41310,asmbl_41314	none	STRG.4417.2,STRG.4417.3,STRG.4417.5,blat.proc3829889.chain_436,blat.proc3829889.chain_437	5	STRG.4417.1,blat.proc3829889.chain_439	2
scaffold_22	alt_acceptor	1013399	1013400	-	asmbl_29904	none	STRG.24743.2,blat.proc3829899.chain_1858	2	STRG.24743.1,blat.proc3829899.chain_1857	2
scaffold_1	alternate_exon	11740050	11745094	+	asmbl_2124	none	STRG.787.2,blat.proc3829871.chain_880	2	Trinity_GG_493_c0_g1_i2,blat.proc3829871.chain_877	2
scaffold_8	retained_intron	11580799	11580896	+	asmbl_52230	none	blat.proc3829875.chain_2771	1	STRG.10355.1,blat.proc3829875.chain_2769,blat.proc3829875.chain_2770	3
scaffold_7	spliced_intron	12451061	12451190	-	asmbl_50047	none	STRG.9342.3	1	Trinity_GG_22282_c1_g1_i3,blat.proc3829891.chain_1613	2
scaffold_21	alt_acceptor	5528446	5528447	+	asmbl_28594	none	STRG.24070.2	1	STRG.24070.1,blat.proc3829883.chain_1218,blat.proc3829883.chain_1219	3
scaffold_12	starts_in_intron	3334411	3334411	-	asmbl_7490	none	blat.proc3829893.chain_2919	1	STRG.14551.1,blat.proc3829893.chain_2918	2
scaffold_18	alternate_exon	8883789	8885317	-	asmbl_20073	none	blat.proc3829897.chain_2287	1	STRG.21540.2	1
scaffold_1	spliced_intron	14216887	14216983	+	asmbl_2333	none	blat.proc3829871.chain_1089	1	STRG.1007.1,blat.proc3829871.chain_1090,blat.proc3829871.chain_1091	3
scaffold_18	alt_donor	7867750	7867751	+	asmbl_20823,asmbl_20824,asmbl_20828,asmbl_20829	none	STRG.21477.1,STRG.21477.2,Trinity_GG_11877_c0_g1_i12,Trinity_GG_11877_c0_g1_i14,blat.proc3829881.chain_2469,blat.proc3829881.chain_2471,blat.proc3829881.chain_2474,blat.proc3829881.chain_2475	8	STRG.21477.3,STRG.21477.6,Trinity_GG_11877_c0_g1_i7,blat.proc3829881.chain_2468	4
scaffold_13	retained_intron	8166668	8166859	-	asmbl_9901	none	blat.proc3829895.chain_765	1	STRG.16095.1	1
scaffold_26	alternate_exon	9609151	9609701	+	asmbl_35771	none	blat.proc3829885.chain_1428	1	STRG.28493.3	1
scaffold_8	alt_donor	17747498	17747499	-	asmbl_53499	none	STRG.10680.1	1	STRG.10680.2	1
scaffold_4	skipped_exon	16480998	16481293	-	asmbl_41927	none	STRG.5226.3,blat.proc3829889.chain_1292	2	blat.proc3829889.chain_1290	1
scaffold_1	alt_donor	5199323	5199324	-	asmbl_245	none	STRG.322.1,blat.proc3829887.chain_207	2	STRG.322.2	1
scaffold_340	retained_intron	809	1149	+	asmbl_40962,asmbl_40963,asmbl_40964	none	STRG.30267.2,Trinity_GG_16763_c0_g1_i8,Trinity_GG_24043_c0_g1_i3,blat.proc3829885.chain_3309,blat.proc3829893.chain_1073,blat.proc3829893.chain_1074	6	STRG.30267.3,STRG.30267.4	2
scaffold_21	alt_donor	56814	56815	-	asmbl_27300	none	STRG.23706.3,blat.proc3829899.chain_736	2	STRG.23706.1,STRG.23706.2,blat.proc3829899.chain_733,blat.proc3829899.chain_734,blat.proc3829899.chain_735	5
scaffold_16	ends_in_intron	13212923	13212923	+	asmbl_17456	none	blat.proc3829881.chain_602	1	STRG.19770.1,STRG.19770.2,blat.proc3829881.chain_595,blat.proc3829881.chain_596,blat.proc3829881.chain_598	5
scaffold_8	spliced_intron	7804635	7804749	-	asmbl_52915,asmbl_52916,asmbl_52917,asmbl_52919	none	STRG.10090.1,blat.proc3829891.chain_2143,blat.proc3829891.chain_2144,blat.proc3829891.chain_2145,blat.proc3829891.chain_2147	5	blat.proc3829891.chain_2146	1
scaffold_6	retained_intron	7516477	7516579	-	asmbl_48434	none	STRG.7647.2,blat.proc3829889.chain_3681	2	STRG.7647.1,blat.proc3829889.chain_3684	2
scaffold_20	retained_intron	10384550	10384667	+	asmbl_26112	none	blat.proc3829883.chain_590	1	STRG.23569.3,STRG.23569.5	2
scaffold_1	spliced_intron	12333296	12334265	-	asmbl_723	none	STRG.843.1	1	STRG.843.2,Trinity_GG_17459_c1_g1_i2,blat.proc3829887.chain_741,blat.proc3829887.chain_747	4
scaffold_4	retained_intron	6672886	6673441	-	asmbl_41432	none	STRG.4523.2,Trinity_GG_19579_c0_g1_i1,blat.proc3829889.chain_690	3	STRG.4523.1,STRG.4523.3,blat.proc3829889.chain_691,blat.proc3829889.chain_692	4
scaffold_3	spliced_intron	19884864	19885401	-	asmbl_39614,asmbl_39619	none	STRG.4100.2,STRG.4100.4,Trinity_GG_19264_c1_g1_i4,blat.proc3829889.chain_142	4	Trinity_GG_19264_c1_g1_i6,blat.proc3829889.chain_139,blat.proc3829889.chain_144	3
scaffold_22	alternate_exon	8395824	8396535	+	asmbl_29563	none	STRG.25172.3,Trinity_GG_13931_c1_g1_i1,blat.proc3829883.chain_2218,blat.proc3829883.chain_2219	4	STRG.25172.1	1
scaffold_23	retained_intron	4167441	4167665	+	asmbl_30791	none	Trinity_GG_14244_c0_g1_i4,blat.proc3829883.chain_2697,blat.proc3829883.chain_2698	3	STRG.25817.1,STRG.25817.2,blat.proc3829883.chain_2699	3
scaffold_5	alt_acceptor	5058001	5058002	+	asmbl_44002	none	STRG.5949.2	1	STRG.5949.1,STRG.5949.3,Trinity_GG_3276_c0_g2_i4,blat.proc3829873.chain_2142,blat.proc3829873.chain_2144,blat.proc3829873.chain_2145	6
scaffold_1	alt_acceptor	9312678	9312679	+	asmbl_1973	none	STRG.625.1,blat.proc3829871.chain_686	2	STRG.625.2	1
scaffold_2	alt_donor	17951798	17951799	-	asmbl_23778	none	STRG.2686.2	1	STRG.2686.1,blat.proc3829887.chain_2526	2
scaffold_17	alt_donor	2684413	2684414	+	asmbl_17812	none	blat.proc3829881.chain_884	1	STRG.20051.1,STRG.20051.2,blat.proc3829881.chain_882,blat.proc3829881.chain_883	4
scaffold_10	retained_intron	11601926	11602115	+	asmbl_4752	none	blat.proc3829877.chain_1385	1	STRG.12807.1,STRG.12807.2,STRG.12807.5,blat.proc3829877.chain_1380,blat.proc3829877.chain_1381,blat.proc3829877.chain_1384	6
scaffold_23	starts_in_intron	1993613	1993613	+	asmbl_30674	none	blat.proc3829883.chain_2555	1	STRG.25649.1,Trinity_GG_14166_c0_g1_i2,blat.proc3829883.chain_2554	3
scaffold_21	starts_in_intron	9926567	9926567	-	asmbl_28010	none	blat.proc3829899.chain_1515	1	STRG.24446.1,STRG.24446.4,STRG.24446.6,blat.proc3829899.chain_1513	4
scaffold_18	alt_acceptor	2156605	2156606	-	asmbl_19748	none	STRG.21103.2,blat.proc3829897.chain_1958	2	STRG.21103.1,blat.proc3829897.chain_1956,blat.proc3829897.chain_1957	3
scaffold_27	retained_intron	3000478	3000572	+	asmbl_36109,asmbl_36113,asmbl_36115,asmbl_36118	none	STRG.28767.2,STRG.28767.3,Trinity_GG_15918_c0_g1_i4,blat.proc3829885.chain_1843,blat.proc3829885.chain_1846,blat.proc3829885.chain_1849	6	STRG.28767.1,STRG.28767.4,STRG.28767.5,blat.proc3829885.chain_1838,blat.proc3829885.chain_1839,blat.proc3829885.chain_1841,blat.proc3829885.chain_1842,blat.proc3829885.chain_1847	8
scaffold_5	starts_in_intron	7028729	7028729	+	asmbl_44140	none	blat.proc3829873.chain_2262	1	STRG.6108.1,STRG.6108.2	2
scaffold_6	alternate_exon	2879158	2879220	-	asmbl_48124	none	STRG.7278.2,blat.proc3829889.chain_3278	2	STRG.7278.1	1
scaffold_1	alt_donor	17729072	17729073	+	asmbl_2518	none	STRG.1242.2	1	STRG.1242.1,blat.proc3829871.chain_1307	2
scaffold_16	spliced_intron	1237437	1237543	-	asmbl_16101,asmbl_16102	none	STRG.19075.1,blat.proc3829897.chain_126,blat.proc3829897.chain_127	3	blat.proc3829897.chain_128	1
scaffold_8	spliced_intron	1207989	1208036	-	asmbl_52691	none	STRG.9740.1	1	STRG.9740.2,STRG.9740.3	2
scaffold_5	alt_acceptor	7320424	7320425	+	asmbl_44155	none	Trinity_GG_3345_c0_g2_i1	1	STRG.6121.2	1
scaffold_13	alt_acceptor	11342241	11342242	+	asmbl_11247	none	STRG.16283.1,blat.proc3829879.chain_953	2	STRG.16283.2	1
scaffold_25	retained_intron	8680664	8680776	+	asmbl_33741	none	STRG.27670.1,blat.proc3829885.chain_677	2	STRG.27670.2,blat.proc3829885.chain_678	2
scaffold_24	starts_in_intron	6463962	6463962	+	asmbl_32327	none	blat.proc3829883.chain_3606	1	STRG.26684.1,blat.proc3829883.chain_3607	2
scaffold_12	alt_donor	10169629	10169630	+	asmbl_8871	none	STRG.14972.1	1	STRG.14972.2	1
scaffold_5	retained_intron	13067434	13067568	+	asmbl_44520	none	Trinity_GG_3560_c0_g1_i1,blat.proc3829873.chain_2665	2	STRG.6526.1,blat.proc3829873.chain_2667	2
scaffold_8	starts_in_intron	16506770	16506770	-	asmbl_53419	none	blat.proc3829891.chain_2867	1	STRG.10621.1,STRG.10621.3,STRG.10621.4,blat.proc3829891.chain_2859,blat.proc3829891.chain_2862,blat.proc3829891.chain_2865,blat.proc3829891.chain_2871	7
scaffold_7	retained_intron	12386811	12386895	-	asmbl_50019	none	blat.proc3829891.chain_1536	1	blat.proc3829891.chain_1531	1
scaffold_13	retained_exon	8810472	8810521	-	asmbl_9940,asmbl_9943,asmbl_9944	none	Trinity_GG_26094_c0_g1_i10,blat.proc3829895.chain_937,blat.proc3829895.chain_940,blat.proc3829895.chain_941	4	blat.proc3829895.chain_943	1
scaffold_12	starts_in_intron	13051423	13051423	+	asmbl_9003	none	blat.proc3829877.chain_3637	1	STRG.15178.1,blat.proc3829877.chain_3636	2
scaffold_13	ends_in_intron	6046656	6046656	-	asmbl_9725	none	Trinity_GG_25933_c0_g2_i1,blat.proc3829895.chain_632	2	STRG.15900.3,STRG.15900.4,blat.proc3829895.chain_627,blat.proc3829895.chain_629	4
scaffold_1	starts_in_intron	8752713	8752713	-	asmbl_501	none	blat.proc3829887.chain_512	1	STRG.583.1,STRG.583.2,STRG.583.3,blat.proc3829887.chain_506,blat.proc3829887.chain_507,blat.proc3829887.chain_508	6
scaffold_6	starts_in_intron	17831785	17831785	+	asmbl_47727	none	blat.proc3829875.chain_855	1	STRG.8463.1,STRG.8463.2,blat.proc3829875.chain_856	3
scaffold_12	alt_donor	9680914	9680915	-	asmbl_7816	none	STRG.14931.2	1	STRG.14931.1,blat.proc3829893.chain_3330	2
scaffold_6	spliced_intron	7516493	7516579	-	asmbl_48432,asmbl_48437	none	STRG.7647.3,blat.proc3829889.chain_3683	2	STRG.7647.2,blat.proc3829889.chain_3681	2
scaffold_9	retained_intron	12270251	12270362	+	asmbl_54404,asmbl_54405	none	blat.proc3829877.chain_278,blat.proc3829877.chain_279	2	STRG.11539.1,blat.proc3829877.chain_276	2
scaffold_16	alt_donor	4911965	4911966	-	asmbl_16258	none	STRG.19258.2	1	STRG.19258.1,Trinity_GG_27837_c0_g1_i3,blat.proc3829897.chain_313	3
scaffold_3	spliced_intron	9517588	9517928	+	asmbl_40188	none	blat.proc3829871.chain_3640	1	STRG.3434.2,Trinity_GG_1959_c0_g1_i3,blat.proc3829871.chain_3637,blat.proc3829871.chain_3639	4
scaffold_15	alternate_exon	12621152	12622144	+	asmbl_14528	none	STRG.18707.2,Trinity_GG_10271_c1_g1_i1,Trinity_GG_10271_c1_g1_i5,blat.proc3829879.chain_3316,blat.proc3829879.chain_3317	5	STRG.18707.1,Trinity_GG_10271_c0_g1_i1,blat.proc3829879.chain_3314	3
scaffold_9	alt_acceptor	17833586	17833587	+	asmbl_54625	none	STRG.11861.1	1	STRG.11861.2	1
scaffold_2	alt_acceptor	14196880	14196881	-	asmbl_23587,asmbl_23588,asmbl_23589,asmbl_23590	none	STRG.2411.1,STRG.2411.2,STRG.2411.4,blat.proc3829887.chain_2297,blat.proc3829887.chain_2298,blat.proc3829887.chain_2300	6	STRG.2411.3	1
scaffold_2	spliced_intron	7816023	7816120	-	asmbl_23300	none	STRG.2080.1,Trinity_GG_18175_c0_g1_i3,blat.proc3829887.chain_1987	3	Trinity_GG_18175_c0_g1_i1,blat.proc3829887.chain_1986	2
scaffold_15	spliced_intron	4117365	4117553	-	asmbl_15131,asmbl_15132,asmbl_15135	none	STRG.18141.1,STRG.18141.2,STRG.18141.4,blat.proc3829895.chain_2826,blat.proc3829895.chain_2828	5	STRG.18141.3,Trinity_GG_27184_c0_g1_i1,blat.proc3829895.chain_2829	3
scaffold_8	retained_intron	11760968	11761438	-	asmbl_53161	none	STRG.10372.1,blat.proc3829891.chain_2447	2	STRG.10372.2	1
scaffold_8	alternate_exon	16228555	16228838	+	asmbl_52429	none	STRG.10606.2,Trinity_GG_5907_c0_g1_i6,blat.proc3829875.chain_3131	3	STRG.10606.1,Trinity_GG_5907_c0_g1_i2,blat.proc3829875.chain_3128	3
scaffold_3	starts_in_intron	15927829	15927829	-	asmbl_39409	none	blat.proc3829887.chain_3679	1	STRG.3872.1,STRG.3872.2,blat.proc3829887.chain_3677,blat.proc3829887.chain_3678	4
scaffold_1	alt_acceptor	8606091	8606092	-	asmbl_463	none	STRG.564.2	1	STRG.564.1,Trinity_GG_17309_c0_g1_i1,blat.proc3829887.chain_441	3
scaffold_18	retained_intron	11297253	11297345	-	asmbl_20157,asmbl_20159	none	Trinity_GG_29109_c0_g1_i1,blat.proc3829897.chain_2466,blat.proc3829897.chain_2467	3	STRG.21663.1,blat.proc3829897.chain_2468	2
scaffold_2	alt_donor	16279046	16279047	+	asmbl_25127,asmbl_25130,asmbl_25134,asmbl_25136	none	STRG.2564.1,blat.proc3829871.chain_2777,blat.proc3829871.chain_2784,blat.proc3829871.chain_2785,blat.proc3829871.chain_2786	5	STRG.2564.3,blat.proc3829871.chain_2780,blat.proc3829871.chain_2781,blat.proc3829871.chain_2782,blat.proc3829871.chain_2783	5
scaffold_15	alt_donor	4787057	4787058	-	asmbl_15167	none	STRG.18181.1	1	STRG.18181.2,blat.proc3829895.chain_2915	2
scaffold_5	spliced_intron	19351640	19352041	-	asmbl_46274,asmbl_46275	none	STRG.7024.1,STRG.7024.2,blat.proc3829889.chain_2998	3	blat.proc3829889.chain_2997	1
scaffold_3	starts_in_intron	17345800	17345800	+	asmbl_40628	none	Trinity_GG_2223_c0_g1_i2,blat.proc3829873.chain_363	2	STRG.3962.1,STRG.3962.2,blat.proc3829873.chain_361,blat.proc3829873.chain_364	4
scaffold_14	alt_donor	11439770	11439771	-	asmbl_13468	none	STRG.17461.1,blat.proc3829895.chain_2162	2	STRG.17461.2	1
scaffold_6	spliced_intron	2758883	2758962	+	asmbl_46718	none	STRG.7264.2	1	STRG.7264.6,Trinity_GG_3999_c0_g1_i2	2
scaffold_8	ends_in_intron	9468096	9468096	-	asmbl_53038	none	blat.proc3829891.chain_2402	1	STRG.10197.1,blat.proc3829891.chain_2400,blat.proc3829891.chain_2405,blat.proc3829891.chain_2406,blat.proc3829891.chain_2407,blat.proc3829891.chain_2408	6
scaffold_1	retained_exon	1562434	1562526	+	asmbl_1489	none	STRG.100.2	1	STRG.100.1,blat.proc3829871.chain_136	2
scaffold_28	alternate_exon	7777202	7777242	-	asmbl_37742	none	STRG.29827.2,blat.proc3829901.chain_2944	2	STRG.29827.1,blat.proc3829901.chain_2945	2
scaffold_23	spliced_intron	9951383	9951465	-	asmbl_31829,asmbl_31830,asmbl_31831	none	STRG.26184.1,STRG.26184.2,STRG.26184.3,blat.proc3829899.chain_3241	4	Trinity_GG_31630_c0_g1_i1,blat.proc3829899.chain_3242,blat.proc3829899.chain_3243	3
scaffold_7	starts_in_intron	11152460	11152460	+	asmbl_51037	none	STRG.9249.3,Trinity_GG_5128_c0_g1_i2,blat.proc3829875.chain_1687	3	STRG.9249.2	1
scaffold_5	alt_donor	16519443	16519444	-	asmbl_46129	none	STRG.6833.1,blat.proc3829889.chain_2877	2	blat.proc3829889.chain_2879	1
scaffold_7	retained_exon	15568001	15568071	-	asmbl_50201,asmbl_50202	none	STRG.9545.1,blat.proc3829891.chain_1730	2	blat.proc3829891.chain_1731	1
scaffold_7	spliced_intron	11851032	11851796	+	asmbl_51073	none	STRG.9296.1,blat.proc3829875.chain_1750	2	STRG.9296.2,Trinity_GG_5157_c0_g1_i2,blat.proc3829875.chain_1749,blat.proc3829875.chain_1752	4
scaffold_5	spliced_intron	18981494	18981592	+	asmbl_44949	none	STRG.7005.1,Trinity_GG_3805_c0_g1_i1,blat.proc3829873.chain_3069	3	Trinity_GG_3805_c0_g1_i2,blat.proc3829873.chain_3068	2
scaffold_6	alternate_exon	12554855	12555019	-	asmbl_48761	none	STRG.8010.1	1	STRG.8010.3,blat.proc3829891.chain_322	2
scaffold_16	alt_acceptor	8579430	8579431	+	asmbl_17206	none	STRG.19476.2,blat.proc3829881.chain_351	2	STRG.19476.1,blat.proc3829881.chain_350	2
scaffold_11	skipped_exon	15711535	15711880	+	asmbl_6108	none	blat.proc3829877.chain_2784	1	STRG.14304.1,blat.proc3829877.chain_2782,blat.proc3829877.chain_2783	3
scaffold_19	starts_in_intron	13194699	13194699	-	asmbl_21844	none	STRG.22682.2	1	STRG.22682.1,Trinity_GG_29598_c1_g1_i12,blat.proc3829897.chain_3360,blat.proc3829897.chain_3361,blat.proc3829897.chain_3362,blat.proc3829897.chain_3363,blat.proc3829897.chain_3364,blat.proc3829897.chain_3368,blat.proc3829897.chain_3370,blat.proc3829897.chain_3371	10
scaffold_11	skipped_exon	7047689	7049335	+	asmbl_5612	none	STRG.13722.2	1	STRG.13722.1,Trinity_GG_7553_c0_g1_i3,Trinity_GG_7553_c0_g1_i7,blat.proc3829877.chain_2194,blat.proc3829877.chain_2196	5
scaffold_4	alt_donor	4497587	4497588	-	asmbl_41255	none	STRG.4355.2,blat.proc3829889.chain_434	2	STRG.4355.1,blat.proc3829889.chain_433	2
scaffold_17	alt_donor	2565156	2565157	+	asmbl_17792	none	STRG.20039.1,blat.proc3829881.chain_840	2	STRG.20039.2	1
scaffold_4	ends_in_intron	15355644	15355644	+	asmbl_43280	none	STRG.5127.1,blat.proc3829873.chain_1470	2	STRG.5127.2,STRG.5127.3,blat.proc3829873.chain_1471	3
scaffold_18	starts_in_intron	7233562	7233562	+	asmbl_20758	none	Trinity_GG_11795_c0_g1_i6,blat.proc3829881.chain_2328	2	STRG.21439.1,STRG.21439.2,STRG.21439.3,blat.proc3829881.chain_2327,blat.proc3829881.chain_2330,blat.proc3829881.chain_2331	6
scaffold_4	retained_exon	14318666	14318970	-	asmbl_41789	none	STRG.5045.1,blat.proc3829889.chain_1094	2	STRG.5045.2,blat.proc3829889.chain_1093	2
scaffold_11	spliced_intron	13256180	13256322	+	asmbl_6017	none	STRG.14184.2,blat.proc3829877.chain_2651	2	STRG.14184.1,blat.proc3829877.chain_2654	2
scaffold_22	skipped_exon	9243628	9245873	+	asmbl_29593	none	STRG.25253.1,blat.proc3829883.chain_2267	2	STRG.25253.2,blat.proc3829883.chain_2266	2
scaffold_7	starts_in_intron	13866487	13866487	-	asmbl_50141	none	blat.proc3829891.chain_1676	1	STRG.9469.1	1
scaffold_20	spliced_intron	10114940	10115029	-	asmbl_27008,asmbl_27009	none	STRG.23549.2,STRG.23549.3	2	STRG.23549.1,blat.proc3829899.chain_564,blat.proc3829899.chain_565	3
scaffold_17	retained_intron	14037114	14037195	-	asmbl_19448,asmbl_19449	none	STRG.20870.1,STRG.20870.3	2	STRG.20870.2	1
scaffold_3	retained_exon	14514078	14514131	-	asmbl_39332	none	STRG.3790.3,Trinity_GG_19112_c0_g1_i1,blat.proc3829887.chain_3597	3	STRG.3790.1	1
scaffold_8	retained_exon	9128525	9128688	-	asmbl_53005,asmbl_53006	none	STRG.10161.3,STRG.10161.4	2	STRG.10161.1	1
scaffold_6	skipped_exon	16604802	16607492	+	asmbl_47647	none	STRG.8378.1	1	STRG.8378.3	1
scaffold_14	spliced_intron	1602723	1602820	-	asmbl_12880	none	STRG.16790.1,Trinity_GG_26418_c0_g1_i5,blat.proc3829895.chain_1497	3	STRG.16790.3,Trinity_GG_26418_c0_g1_i2,blat.proc3829895.chain_1494	3
scaffold_3	alt_donor	13424512	13424513	-	asmbl_39215	none	STRG.3690.2	1	STRG.3690.3,STRG.3690.4,STRG.3690.5	3
scaffold_20	alt_acceptor	10384686	10384687	+	asmbl_26108	none	Trinity_GG_12979_c0_g1_i5,blat.proc3829883.chain_592	2	STRG.23569.1,STRG.23569.2,STRG.23569.3,STRG.23569.5,Trinity_GG_12979_c0_g1_i2,Trinity_GG_12979_c0_g1_i6,blat.proc3829883.chain_591,blat.proc3829883.chain_594	8
scaffold_2	alternate_exon	7214806	7215264	+	asmbl_24573,asmbl_24579	none	STRG.2054.3,Trinity_GG_1174_c0_g1_i5,Trinity_GG_1174_c0_g1_i8,blat.proc3829871.chain_2148,blat.proc3829871.chain_2151	5	STRG.2054.4,Trinity_GG_1174_c0_g1_i3,blat.proc3829871.chain_2146	3
scaffold_22	alternate_exon	11477475	11477601	+	asmbl_29680	none	STRG.25476.3,Trinity_GG_14064_c0_g1_i3,blat.proc3829883.chain_2403	3	STRG.25476.1,STRG.25476.4,Trinity_GG_14064_c0_g1_i2,Trinity_GG_14064_c0_g1_i4,blat.proc3829883.chain_2402,blat.proc3829883.chain_2404	6
scaffold_19	alternate_exon	13131512	13131552	-	asmbl_21819	none	STRG.22621.2,Trinity_GG_29613_c0_g1_i1,blat.proc3829897.chain_3400	3	STRG.22621.1,blat.proc3829897.chain_3401	2
scaffold_28	starts_in_intron	2133319	2133319	+	asmbl_38025	none	blat.proc3829885.chain_2439	1	STRG.29354.1,blat.proc3829885.chain_2438	2
scaffold_14	starts_in_intron	329909	329909	-	asmbl_12803,asmbl_12806	none	STRG.16713.3,Trinity_GG_26365_c0_g1_i1,blat.proc3829895.chain_1415	3	STRG.16713.1,STRG.16713.2,Trinity_GG_26365_c0_g1_i2,Trinity_GG_26365_c0_g1_i3,Trinity_GG_26365_c0_g1_i4,blat.proc3829895.chain_1416,blat.proc3829895.chain_1417,blat.proc3829895.chain_1418	8
scaffold_3	starts_in_intron	10853592	10853592	+	asmbl_40261	none	STRG.3521.2	1	STRG.3521.1	1
scaffold_19	skipped_exon	13195164	13195671	-	asmbl_21827,asmbl_21839,asmbl_21841,asmbl_21843,asmbl_21845	none	STRG.22682.1,blat.proc3829897.chain_3360,blat.proc3829897.chain_3361,blat.proc3829897.chain_3363,blat.proc3829897.chain_3364,blat.proc3829897.chain_3370	6	Trinity_GG_29598_c1_g1_i12,blat.proc3829897.chain_3371	2
scaffold_12	alternate_exon	4787046	4788187	-	asmbl_7586	none	blat.proc3829893.chain_3019	1	STRG.14646.1,STRG.14646.2,blat.proc3829893.chain_3017,blat.proc3829893.chain_3018,blat.proc3829893.chain_3022,blat.proc3829893.chain_3023	6
scaffold_5	starts_in_intron	6666582	6666582	-	asmbl_45515	none	blat.proc3829889.chain_2067	1	STRG.6063.1,blat.proc3829889.chain_2066	2
scaffold_20	alt_donor	6954679	6954680	-	asmbl_26773,asmbl_26776	none	STRG.23254.5,STRG.23254.6,blat.proc3829899.chain_238	3	STRG.23254.2,STRG.23254.3,STRG.23254.7,blat.proc3829899.chain_237,blat.proc3829899.chain_239	5
scaffold_4	alt_donor	16609395	16609396	-	asmbl_41952	none	STRG.5239.2,Trinity_GG_19911_c0_g1_i1,blat.proc3829889.chain_1238	3	STRG.5239.1,blat.proc3829889.chain_1239	2
scaffold_27	skipped_exon	1983237	1983877	-	asmbl_36751	none	STRG.28662.2,blat.proc3829901.chain_1853	2	STRG.28662.1,blat.proc3829901.chain_1854	2
scaffold_3	alt_acceptor	16796998	16796999	-	asmbl_39464	none	STRG.3933.1	1	STRG.3933.2,blat.proc3829887.chain_3701	2
scaffold_4	starts_in_intron	12687283	12687283	+	asmbl_43066	none	Trinity_GG_2675_c0_g1_i1,blat.proc3829873.chain_1148	2	STRG.4908.1	1
scaffold_15	ends_in_intron	9640443	9640443	-	asmbl_15413	none	blat.proc3829895.chain_3178	1	blat.proc3829895.chain_3177,blat.proc3829895.chain_3185	2
scaffold_15	spliced_intron	15414145	15414264	+	asmbl_14727	none	Trinity_GG_10387_c0_g1_i3,blat.proc3829879.chain_3554	2	STRG.18922.1,STRG.18922.2,STRG.18922.4,blat.proc3829879.chain_3552,blat.proc3829879.chain_3556	5
scaffold_21	alt_donor	7290944	7290945	-	asmbl_27816	none	STRG.24237.3,blat.proc3829899.chain_1309	2	STRG.24237.1,STRG.24237.2,blat.proc3829899.chain_1307	3
scaffold_22	skipped_exon	5984784	5985349	-	asmbl_30066	none	STRG.24932.2	1	STRG.24932.3	1
scaffold_5	retained_intron	6629852	6630029	-	asmbl_45508	none	STRG.6058.1,blat.proc3829889.chain_2094	2	STRG.6058.2,blat.proc3829889.chain_2095	2
scaffold_13	alternate_exon	2992659	2992721	+	asmbl_10634	none	STRG.15589.3	1	STRG.15589.1,STRG.15589.2,blat.proc3829879.chain_309	3
scaffold_13	alt_acceptor	732825	732826	+	asmbl_10476	none	STRG.15444.2	1	STRG.15444.1,STRG.15444.3,blat.proc3829879.chain_108	3
scaffold_19	ends_in_intron	1105676	1105676	-	asmbl_21235	none	Trinity_GG_29212_c0_g1_i4,blat.proc3829897.chain_2644	2	STRG.21887.1,STRG.21887.2,STRG.21887.3,STRG.21887.4,Trinity_GG_29212_c0_g1_i3,blat.proc3829897.chain_2643	6
scaffold_23	retained_exon	5080495	5080566	-	asmbl_31600	none	STRG.25871.1,blat.proc3829899.chain_2988	2	STRG.25871.2,blat.proc3829899.chain_2987	2
scaffold_28	alt_acceptor	3216632	3216633	-	asmbl_37466	none	STRG.29513.2,blat.proc3829901.chain_2616	2	STRG.29513.1,blat.proc3829901.chain_2617	2
scaffold_18	alt_acceptor	3634978	3634979	+	asmbl_20495	none	STRG.21169.3	1	STRG.21169.1,STRG.21169.2,blat.proc3829881.chain_2050,blat.proc3829881.chain_2051,blat.proc3829881.chain_2052	5
scaffold_10	retained_intron	13789012	13789048	+	asmbl_4890	none	STRG.12969.1	1	STRG.12969.4	1
scaffold_11	retained_exon	3496299	3497549	+	asmbl_5398	none	blat.proc3829877.chain_1902	1	STRG.13472.1	1
scaffold_10	starts_in_intron	5741973	5741973	-	asmbl_3296	none	blat.proc3829893.chain_838	1	STRG.12399.1,STRG.12399.2,blat.proc3829893.chain_836,blat.proc3829893.chain_837,blat.proc3829893.chain_839,blat.proc3829893.chain_840	6
scaffold_25	alt_acceptor	3084205	3084206	-	asmbl_34074,asmbl_34076,asmbl_34079,asmbl_34080	none	STRG.27230.1,STRG.27230.3,blat.proc3829901.chain_488,blat.proc3829901.chain_489	4	STRG.27230.2,blat.proc3829901.chain_490	2
scaffold_6	spliced_intron	573750	573950	+	asmbl_46618	none	STRG.7105.2,blat.proc3829873.chain_3210	2	STRG.7105.1,Trinity_GG_3890_c0_g1_i1,blat.proc3829873.chain_3209	3
scaffold_1	skipped_exon	5136946	5137638	+	asmbl_1696	none	STRG.317.2,blat.proc3829871.chain_381	2	blat.proc3829871.chain_380	1
scaffold_28	starts_in_intron	7530816	7530816	+	asmbl_38384	none	Trinity_GG_16495_c0_g1_i1,blat.proc3829885.chain_2863	2	STRG.29810.1,blat.proc3829885.chain_2865,blat.proc3829885.chain_2866,blat.proc3829885.chain_2867	4
scaffold_21	retained_exon	7812103	7812165	-	asmbl_27875	none	blat.proc3829899.chain_1364	1	STRG.24304.3	1
scaffold_26	retained_intron	6659499	6659582	+	asmbl_35626	none	blat.proc3829885.chain_1290	1	STRG.28361.1,blat.proc3829885.chain_1287,blat.proc3829885.chain_1288,blat.proc3829885.chain_1289	4
scaffold_6	alt_acceptor	10867054	10867055	+	asmbl_47236	none	STRG.7897.2,blat.proc3829875.chain_285	2	STRG.7897.1,blat.proc3829875.chain_286	2
scaffold_1	retained_exon	14320864	14320879	+	asmbl_2359	none	STRG.1024.4,blat.proc3829871.chain_1130	2	STRG.1024.1,blat.proc3829871.chain_1129	2
scaffold_20	alt_donor	1489711	1489712	+	asmbl_25572	none	STRG.22855.3	1	STRG.22855.1,STRG.22855.2,STRG.22855.5	3
scaffold_14	skipped_exon	14143142	14144218	+	asmbl_12509,asmbl_12512,asmbl_12515	none	STRG.17676.1,STRG.17676.3,blat.proc3829879.chain_2283,blat.proc3829879.chain_2284	4	STRG.17676.2,STRG.17676.4,STRG.17676.5	3
scaffold_14	alternate_exon	14148983	14150151	+	asmbl_12511,asmbl_12515	none	STRG.17676.3,STRG.17676.5	2	STRG.17676.4	1
scaffold_2	ends_in_intron	4582367	4582367	+	asmbl_24381	none	blat.proc3829871.chain_1919	1	STRG.1884.1,STRG.1884.2,STRG.1884.3,blat.proc3829871.chain_1912	4
scaffold_20	retained_intron	817430	817604	+	asmbl_25533,asmbl_25535	none	STRG.22780.1,Trinity_GG_12526_c0_g1_i5,blat.proc3829881.chain_3614,blat.proc3829881.chain_3616,blat.proc3829881.chain_3617	5	STRG.22780.2,blat.proc3829881.chain_3615	2
scaffold_27	retained_intron	2883096	2883240	-	asmbl_36818	none	STRG.28754.1,blat.proc3829901.chain_1866	2	STRG.28754.2,STRG.28754.3,blat.proc3829901.chain_1867	3
scaffold_21	retained_intron	10309452	10309508	-	asmbl_28058	none	STRG.24484.1,Trinity_GG_30694_c0_g1_i1	2	STRG.24484.3	1
scaffold_13	alt_donor	3085120	3085121	+	asmbl_10641	none	STRG.15600.2,blat.proc3829879.chain_324	2	STRG.15600.1,blat.proc3829879.chain_325	2
scaffold_21	alt_donor	5604559	5604560	+	asmbl_28603	none	STRG.24080.1,blat.proc3829883.chain_1226	2	STRG.24080.2	1
scaffold_7	spliced_intron	12447826	12449542	-	asmbl_50040,asmbl_50043,asmbl_50047	none	STRG.9342.3,STRG.9342.4,blat.proc3829891.chain_1605	3	blat.proc3829891.chain_1606	1
scaffold_2	ends_in_intron	7928086	7928086	-	asmbl_23315	none	STRG.2092.3,Trinity_GG_18202_c0_g1_i6,blat.proc3829887.chain_2035	3	STRG.2092.1,STRG.2092.2,blat.proc3829887.chain_2033,blat.proc3829887.chain_2034,blat.proc3829887.chain_2036	5
scaffold_15	starts_in_intron	7907618	7907618	-	asmbl_15341	none	blat.proc3829895.chain_3117	1	STRG.18360.1	1
scaffold_13	retained_intron	11379478	11379627	-	asmbl_10044,asmbl_10047	none	STRG.16287.8,Trinity_GG_26140_c0_g1_i11,blat.proc3829895.chain_1032	3	Trinity_GG_26140_c0_g1_i7,blat.proc3829895.chain_1030	2
scaffold_8	spliced_intron	18248240	18248543	-	asmbl_53534,asmbl_53535,asmbl_53539	none	STRG.10723.5,blat.proc3829891.chain_2919,blat.proc3829891.chain_2921,blat.proc3829891.chain_2925	4	STRG.10723.4,blat.proc3829891.chain_2922,blat.proc3829891.chain_2923,blat.proc3829891.chain_2924	4
scaffold_10	spliced_intron	5857032	5858338	-	asmbl_3313,asmbl_3314,asmbl_3315	none	STRG.12401.1,STRG.12401.2,STRG.12401.3,blat.proc3829893.chain_872	4	Trinity_GG_23943_c0_g1_i1,blat.proc3829893.chain_870,blat.proc3829893.chain_871	3
scaffold_9	spliced_intron	9688546	9688614	-	asmbl_55205	none	STRG.11334.3	1	blat.proc3829891.chain_3513,blat.proc3829891.chain_3514	2
scaffold_18	spliced_intron	1862478	1862581	-	asmbl_19684,asmbl_19685,asmbl_19686	none	STRG.21063.1,STRG.21063.3,blat.proc3829897.chain_1841,blat.proc3829897.chain_1842	4	STRG.21063.2,Trinity_GG_28762_c0_g1_i3,blat.proc3829897.chain_1840	3
scaffold_9	retained_intron	3414002	3414140	-	asmbl_54865	none	blat.proc3829891.chain_3121,blat.proc3829891.chain_3123	2	STRG.10946.1,blat.proc3829891.chain_3122	2
scaffold_8	retained_intron	6309352	6309452	+	asmbl_51949	none	blat.proc3829875.chain_2464	1	STRG.10028.1,Trinity_GG_5540_c0_g2_i1,blat.proc3829875.chain_2461,blat.proc3829875.chain_2465	4
scaffold_3	ends_in_intron	18123353	18123353	+	asmbl_40684	none	STRG.4022.2,blat.proc3829873.chain_412	2	STRG.4022.1	1
scaffold_5	retained_intron	9085892	9085964	+	asmbl_44263	none	blat.proc3829873.chain_2421	1	STRG.6237.1,STRG.6237.2,STRG.6237.3,STRG.6237.4,STRG.6237.5,blat.proc3829873.chain_2418,blat.proc3829873.chain_2419,blat.proc3829873.chain_2422,blat.proc3829873.chain_2423,blat.proc3829873.chain_2424,blat.proc3829873.chain_2426	11
scaffold_9	retained_intron	16559310	16560403	-	asmbl_55544,asmbl_55546,asmbl_55547	none	STRG.11797.2,STRG.11797.3,STRG.11797.6,Trinity_GG_23481_c0_g1_i1,Trinity_GG_23481_c0_g2_i1,blat.proc3829893.chain_81,blat.proc3829893.chain_82	7	STRG.11797.5	1
scaffold_10	alt_acceptor	3774874	3774875	-	asmbl_3142	none	STRG.12201.2	1	STRG.12201.1,blat.proc3829893.chain_660	2
scaffold_6	alt_donor	17847263	17847264	+	asmbl_47730	none	STRG.8466.1	1	blat.proc3829875.chain_857	1
scaffold_4	retained_intron	5230743	5231130	-	asmbl_41311,asmbl_41313	none	STRG.4417.4,Trinity_GG_19430_c0_g1_i1,blat.proc3829889.chain_438,blat.proc3829889.chain_440	4	STRG.4417.2,STRG.4417.5,blat.proc3829889.chain_437	3
scaffold_14	ends_in_intron	11754552	11754552	+	asmbl_12384	none	blat.proc3829879.chain_2184	1	STRG.17516.1,STRG.17516.2,blat.proc3829879.chain_2185,blat.proc3829879.chain_2186	4
scaffold_6	retained_intron	8582069	8582179	+	asmbl_47086,asmbl_47088	none	STRG.7732.2,STRG.7732.3	2	STRG.7732.4,blat.proc3829875.chain_110	2
scaffold_10	alternate_exon	7840089	7840117	+	asmbl_4586	none	STRG.12567.2	1	STRG.12567.1	1
scaffold_2	alt_donor	18405378	18405379	-	asmbl_23796	none	STRG.2724.1,blat.proc3829887.chain_2500	2	STRG.2724.2	1
scaffold_10	spliced_intron	378745	378845	-	asmbl_2867	none	STRG.11913.1,blat.proc3829893.chain_302	2	STRG.11913.2,STRG.11913.3,STRG.11913.4,STRG.11913.5,Trinity_GG_23607_c0_g1_i1,Trinity_GG_23607_c0_g1_i6,blat.proc3829893.chain_306,blat.proc3829893.chain_307	8
scaffold_27	spliced_intron	313987	314458	-	asmbl_36612	none	blat.proc3829901.chain_1671	1	Trinity_GG_32948_c0_g1_i13,blat.proc3829901.chain_1673	2
scaffold_5	spliced_intron	9711452	9711758	+	asmbl_44299	none	STRG.6273.2,blat.proc3829873.chain_2439	2	blat.proc3829873.chain_2438	1
scaffold_16	alternate_exon	8715635	8716633	-	asmbl_16435	none	blat.proc3829897.chain_510	1	STRG.19484.2,STRG.19484.3,blat.proc3829897.chain_509,blat.proc3829897.chain_511	4
scaffold_27	starts_in_intron	1425919	1425919	-	asmbl_36710	none	blat.proc3829901.chain_1817	1	STRG.28619.1,blat.proc3829901.chain_1818	2
scaffold_6	alternate_exon	1763458	1763623	+	asmbl_46691	none	STRG.7217.2	1	STRG.7217.1,blat.proc3829873.chain_3293	2
scaffold_14	alt_acceptor	8277347	8277348	+	asmbl_12193	none	STRG.17235.4,blat.proc3829879.chain_1989	2	STRG.17235.1,blat.proc3829879.chain_1990	2
scaffold_26	spliced_intron	7774100	7774213	+	asmbl_35672	none	blat.proc3829885.chain_1359	1	Trinity_GG_15671_c0_g1_i6,blat.proc3829885.chain_1357	2
scaffold_13	spliced_intron	3021498	3021692	-	asmbl_9464	none	STRG.15592.2,blat.proc3829895.chain_364	2	STRG.15592.1	1
scaffold_8	retained_exon	10484123	10484486	+	asmbl_52160	none	STRG.10277.1,blat.proc3829875.chain_2786	2	STRG.10277.2,blat.proc3829875.chain_2785	2
scaffold_4	ends_in_intron	7092383	7092383	+	asmbl_42800	none	blat.proc3829873.chain_949	1	STRG.4545.1,STRG.4545.2,STRG.4545.3,STRG.4545.4,blat.proc3829873.chain_943	5
scaffold_18	retained_intron	8401454	8401901	+	asmbl_20860	none	blat.proc3829881.chain_2516	1	STRG.21503.2,STRG.21503.3,STRG.21503.4	3
scaffold_13	retained_intron	9553953	9554101	+	asmbl_11194	none	STRG.16207.1,Trinity_GG_8886_c0_g1_i1,blat.proc3829879.chain_913	3	Trinity_GG_8886_c0_g1_i2,blat.proc3829879.chain_912	2
scaffold_17	alt_donor	8210510	8210511	-	asmbl_19123	none	STRG.20431.2,blat.proc3829897.chain_1409	2	STRG.20431.1,blat.proc3829897.chain_1411	2
scaffold_16	alternate_exon	146167	154866	-	asmbl_16005,asmbl_16011	none	STRG.19000.1,Trinity_GG_27691_c0_g1_i4,Trinity_GG_27691_c0_g1_i8	3	Trinity_GG_27691_c0_g1_i9	1
scaffold_21	retained_intron	2946480	2946674	-	asmbl_27521	none	Trinity_GG_30331_c0_g1_i4,blat.proc3829899.chain_968	2	STRG.23903.1,STRG.23903.2,STRG.23903.3,Trinity_GG_30331_c0_g1_i1,Trinity_GG_30331_c0_g1_i3,blat.proc3829899.chain_969,blat.proc3829899.chain_970	7
scaffold_16	starts_in_intron	12018610	12018610	+	asmbl_17429	none	STRG.19717.3,blat.proc3829881.chain_609	2	STRG.19717.1,Trinity_GG_10822_c0_g1_i3,blat.proc3829881.chain_608	3
scaffold_5	spliced_intron	11992233	11993057	-	asmbl_45811,asmbl_45815,asmbl_45816	none	STRG.6447.3,STRG.6447.4,STRG.6447.5,blat.proc3829889.chain_2519	4	blat.proc3829889.chain_2520	1
scaffold_11	skipped_exon	3556958	3559422	-	asmbl_6530	none	STRG.13471.2	1	STRG.13471.1,blat.proc3829893.chain_1943,blat.proc3829893.chain_1946	3
scaffold_9	starts_in_intron	16592104	16592104	+	asmbl_54586	none	Trinity_GG_6589_c0_g1_i2,blat.proc3829877.chain_562	2	STRG.11792.1,blat.proc3829877.chain_561	2
scaffold_12	starts_in_intron	14984979	14984979	+	asmbl_9066	none	Trinity_GG_8408_c1_g1_i3	1	STRG.15277.1,Trinity_GG_8408_c1_g1_i2	2
scaffold_15	spliced_intron	14663329	14663440	+	asmbl_14641	none	STRG.18874.2	1	Trinity_GG_10354_c0_g1_i2,blat.proc3829879.chain_3458	2
scaffold_5	skipped_exon	15547083	15548192	-	asmbl_46077,asmbl_46079	none	STRG.6737.1,STRG.6737.2,blat.proc3829889.chain_2776	3	STRG.6737.3	1
scaffold_7	retained_intron	9583534	9583622	+	asmbl_50965	none	STRG.9138.1,Trinity_GG_5076_c0_g1_i1,blat.proc3829875.chain_1605	3	STRG.9138.2,blat.proc3829875.chain_1604	2
scaffold_12	alt_donor	10611667	10611668	+	asmbl_8919	none	STRG.15029.2	1	STRG.15029.3,Trinity_GG_8309_c0_g1_i1,blat.proc3829877.chain_3546	3
scaffold_10	ends_in_intron	925980	925980	-	asmbl_2927	none	Trinity_GG_23671_c0_g1_i3,blat.proc3829893.chain_420	2	STRG.11959.1,STRG.11959.2,Trinity_GG_23671_c0_g1_i2,blat.proc3829893.chain_421	4
scaffold_5	spliced_intron	18758460	18758711	-	asmbl_46250	none	blat.proc3829889.chain_2993	1	blat.proc3829889.chain_2995	1
scaffold_22	spliced_intron	4241052	4241193	-	asmbl_29977,asmbl_29978,asmbl_29979,asmbl_29980,asmbl_29981,asmbl_29984	none	STRG.24838.1,STRG.24838.2,STRG.24838.3,STRG.24838.4,Trinity_GG_30899_c1_g1_i5,blat.proc3829899.chain_1980,blat.proc3829899.chain_1981,blat.proc3829899.chain_1982	8	blat.proc3829899.chain_1983	1
scaffold_28	ends_in_intron	2581324	2581324	+	asmbl_38075	none	Trinity_GG_16271_c2_g1_i1,blat.proc3829885.chain_2456	2	STRG.29411.1,blat.proc3829885.chain_2453	2
scaffold_3	alt_donor	16443933	16443934	+	asmbl_40584,asmbl_40585	none	STRG.3919.3,blat.proc3829873.chain_306	2	STRG.3919.1,STRG.3919.2,blat.proc3829873.chain_305	3
scaffold_8	retained_exon	12626029	12626108	-	asmbl_53213,asmbl_53214	none	STRG.10429.1,blat.proc3829891.chain_2557,blat.proc3829891.chain_2558	3	STRG.10429.2	1
scaffold_13	ends_in_intron	1216045	1216045	+	asmbl_10510	none	STRG.15476.1	1	STRG.15476.2,Trinity_GG_8525_c0_g1_i1,blat.proc3829879.chain_202	3
scaffold_28	starts_in_intron	7275195	7275195	-	asmbl_37713	none	STRG.29774.4,blat.proc3829901.chain_2851	2	blat.proc3829901.chain_2853	1
scaffold_6	skipped_exon	17645170	17647067	-	asmbl_49130	none	STRG.8448.1	1	STRG.8448.2	1
scaffold_23	starts_in_intron	4101265	4101265	-	asmbl_31551	none	blat.proc3829899.chain_2933	1	STRG.25802.1,STRG.25802.4,STRG.25802.5	3
scaffold_6	ends_in_intron	15759643	15759643	-	asmbl_49018	none	blat.proc3829891.chain_537	1	STRG.8311.1	1
scaffold_17	ends_in_intron	3659729	3659729	+	asmbl_17855	none	blat.proc3829881.chain_888	1	blat.proc3829881.chain_887	1
scaffold_5	retained_exon	18328102	18328179	+	asmbl_44904	none	STRG.6956.1,blat.proc3829873.chain_3098	2	STRG.6956.2	1
scaffold_18	alternate_exon	13482883	13483020	-	asmbl_20203	none	STRG.21778.1,blat.proc3829897.chain_2499	2	STRG.21778.3,blat.proc3829897.chain_2500	2
scaffold_4	alt_acceptor	8770989	8770990	+	asmbl_42912,asmbl_42913,asmbl_42915	none	STRG.4690.1,STRG.4690.3,STRG.4690.5,Trinity_GG_2586_c0_g1_i2,blat.proc3829873.chain_1026,blat.proc3829873.chain_1027	6	STRG.4690.2,STRG.4690.4	2
scaffold_19	retained_intron	11481673	11481887	-	asmbl_21618	none	Trinity_GG_29530_c0_g1_i2,blat.proc3829897.chain_3183	2	STRG.22477.1,STRG.22477.2,STRG.22477.3,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184,blat.proc3829897.chain_3185,blat.proc3829897.chain_3187,blat.proc3829897.chain_3192	8
scaffold_3	retained_intron	19885239	19885401	-	asmbl_39617,asmbl_39618	none	Trinity_GG_19264_c1_g1_i6,blat.proc3829889.chain_139,blat.proc3829889.chain_144	3	STRG.4100.1,Trinity_GG_19264_c1_g1_i1,Trinity_GG_19264_c1_g1_i7,blat.proc3829889.chain_140,blat.proc3829889.chain_141	5
scaffold_13	alt_donor	4375770	4375771	+	asmbl_10766	none	STRG.15749.1	1	STRG.15749.2	1
scaffold_5	retained_intron	11630266	11630428	-	asmbl_45801,asmbl_45803	none	blat.proc3829889.chain_2526,blat.proc3829889.chain_2528	2	blat.proc3829889.chain_2525	1
scaffold_6	alternate_exon	3545644	3548176	+	asmbl_46795	none	STRG.7357.1,Trinity_GG_4040_c0_g1_i1,blat.proc3829873.chain_3494	3	STRG.7357.2,Trinity_GG_4040_c0_g1_i2,blat.proc3829873.chain_3493	3
scaffold_17	spliced_intron	14633366	14633405	+	asmbl_18534	none	STRG.20934.1	1	STRG.20934.2	1
scaffold_9	starts_in_intron	15393951	15393951	+	asmbl_54545	none	STRG.11731.3,Trinity_GG_6522_c0_g1_i1,blat.proc3829877.chain_442	3	STRG.11731.1,STRG.11731.2,Trinity_GG_6522_c0_g1_i4,Trinity_GG_6522_c0_g1_i5,Trinity_GG_6522_c0_g1_i6,blat.proc3829877.chain_441,blat.proc3829877.chain_443,blat.proc3829877.chain_444	8
scaffold_11	alternate_exon	3092415	3092496	+	asmbl_5361	none	STRG.13419.3	1	STRG.13419.1	1
scaffold_5	retained_intron	18404543	18404691	+	asmbl_44915	none	blat.proc3829873.chain_3065	1	STRG.6968.1,blat.proc3829873.chain_3067	2
scaffold_26	alt_acceptor	968624	968625	-	asmbl_34674	none	STRG.27878.2	1	STRG.27878.1,blat.proc3829901.chain_1136	2
scaffold_9	alt_donor	9688613	9688614	-	asmbl_55205	none	STRG.11334.3	1	STRG.11334.1,STRG.11334.2,blat.proc3829891.chain_3512,blat.proc3829891.chain_3515	4
scaffold_9	starts_in_intron	16738192	16738192	-	asmbl_55585	none	Trinity_GG_23557_c0_g1_i5,blat.proc3829893.chain_221	2	STRG.11811.1,STRG.11811.2,STRG.11811.3,Trinity_GG_23557_c0_g1_i2,Trinity_GG_23557_c0_g1_i6,blat.proc3829893.chain_219,blat.proc3829893.chain_220	7
scaffold_7	alt_acceptor	11184987	11184988	+	asmbl_51040	none	STRG.9252.1,blat.proc3829875.chain_1702	2	STRG.9252.2,blat.proc3829875.chain_1701	2
scaffold_11	ends_in_intron	2427064	2427064	-	asmbl_6475	none	blat.proc3829893.chain_1759	1	STRG.13378.1,blat.proc3829893.chain_1760	2
scaffold_5	starts_in_intron	414955	414955	+	asmbl_43760	none	Trinity_GG_3075_c0_g1_i2,blat.proc3829873.chain_1807	2	STRG.5605.1,blat.proc3829873.chain_1806	2
scaffold_11	skipped_exon	9122914	9123614	+	asmbl_5829	none	STRG.13941.2,blat.proc3829877.chain_2418	2	STRG.13941.1,blat.proc3829877.chain_2417,blat.proc3829877.chain_2419	3
scaffold_18	alternate_exon	4157454	4157646	+	asmbl_20534	none	STRG.21212.1,blat.proc3829881.chain_2045	2	STRG.21212.2,blat.proc3829881.chain_2044	2
scaffold_20	alternate_exon	6655851	6656024	-	asmbl_26765	none	Trinity_GG_29984_c1_g1_i2,blat.proc3829899.chain_282	2	blat.proc3829899.chain_283	1
scaffold_18	retained_intron	1887392	1887983	-	asmbl_19688,asmbl_19691,asmbl_19692,asmbl_19693	none	STRG.21072.5,Trinity_GG_28789_c1_g1_i1,blat.proc3829897.chain_1905	3	STRG.21072.1,blat.proc3829897.chain_1890,blat.proc3829897.chain_1895,blat.proc3829897.chain_1897	4
scaffold_17	starts_in_intron	8837337	8837337	-	asmbl_19173	none	STRG.20481.1	1	blat.proc3829897.chain_1413	1
scaffold_9	starts_in_intron	9734052	9734052	+	asmbl_54230	none	STRG.11341.5,blat.proc3829877.chain_152	2	STRG.11341.1,STRG.11341.3,STRG.11341.4,blat.proc3829877.chain_145,blat.proc3829877.chain_146,blat.proc3829877.chain_148,blat.proc3829877.chain_150,blat.proc3829877.chain_151,blat.proc3829877.chain_153	9
scaffold_12	retained_intron	11690593	11690936	-	asmbl_7954	none	Trinity_GG_25402_c0_g1_i1,blat.proc3829893.chain_3431	2	STRG.15080.2,blat.proc3829893.chain_3430	2
scaffold_2	spliced_intron	15270688	15270822	+	asmbl_25035,asmbl_25037,asmbl_25039,asmbl_25042,asmbl_25043,asmbl_25044	none	STRG.2481.1,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2536,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	7	blat.proc3829871.chain_2526,blat.proc3829871.chain_2527	2
scaffold_6	skipped_exon	12477780	12479147	+	asmbl_47335,asmbl_47336	none	STRG.7999.4,blat.proc3829875.chain_408,blat.proc3829875.chain_409	3	STRG.7999.1,STRG.7999.2,STRG.7999.3,blat.proc3829875.chain_407	4
scaffold_10	retained_intron	4159649	4159782	-	asmbl_3184	none	blat.proc3829893.chain_686	1	STRG.12242.2,STRG.12242.3,blat.proc3829893.chain_687	3
scaffold_4	ends_in_intron	12791693	12791693	+	asmbl_43087	none	blat.proc3829873.chain_1270	1	STRG.4920.1,STRG.4920.2,STRG.4920.3,blat.proc3829873.chain_1272,blat.proc3829873.chain_1273,blat.proc3829873.chain_1275	6
scaffold_7	alt_donor	5183702	5183703	-	asmbl_49690	none	STRG.8845.3	1	STRG.8845.1,STRG.8845.2,blat.proc3829891.chain_1159	3
scaffold_4	retained_intron	19354316	19354420	-	asmbl_42187,asmbl_42189	none	blat.proc3829889.chain_1609,blat.proc3829889.chain_1613	2	STRG.5528.1,blat.proc3829889.chain_1612,blat.proc3829889.chain_1617	3
scaffold_4	alternate_exon	9966757	9966982	-	asmbl_41569	none	STRG.4758.2,Trinity_GG_19666_c1_g1_i1,blat.proc3829889.chain_825	3	STRG.4758.1,blat.proc3829889.chain_822,blat.proc3829889.chain_824	3
scaffold_22	alt_acceptor	9124157	9124158	-	asmbl_30279	none	STRG.25227.1	1	STRG.25227.2	1
scaffold_10	starts_in_intron	3320251	3320251	-	asmbl_3102	none	Trinity_GG_23790_c1_g1_i1,blat.proc3829893.chain_608	2	STRG.12157.1	1
scaffold_5	alternate_exon	4697816	4697879	+	asmbl_43956	none	blat.proc3829873.chain_2096	1	STRG.5917.5,STRG.5917.6,STRG.5917.7,blat.proc3829873.chain_2095	4
scaffold_23	spliced_intron	10978092	10978827	+	asmbl_31185,asmbl_31186,asmbl_31191,asmbl_31193	none	STRG.26281.1,STRG.26281.2,Trinity_GG_14524_c0_g1_i13,Trinity_GG_14524_c0_g1_i9,blat.proc3829883.chain_3194,blat.proc3829883.chain_3195,blat.proc3829883.chain_3201	7	Trinity_GG_14524_c0_g1_i12,Trinity_GG_14524_c0_g1_i8,blat.proc3829883.chain_3192,blat.proc3829883.chain_3193,blat.proc3829883.chain_3197,blat.proc3829883.chain_3199,blat.proc3829883.chain_3200,blat.proc3829883.chain_3203	8
scaffold_13	skipped_exon	11379478	11381831	-	asmbl_10053,asmbl_10054	none	STRG.16287.7,Trinity_GG_26140_c0_g1_i4,blat.proc3829895.chain_1026	3	STRG.16287.1,blat.proc3829895.chain_1034	2
scaffold_5	alt_acceptor	11079124	11079125	+	asmbl_44397,asmbl_44398	none	STRG.6389.1,STRG.6389.3,blat.proc3829873.chain_2531,blat.proc3829873.chain_2533	4	STRG.6389.2,blat.proc3829873.chain_2530,blat.proc3829873.chain_2532	3
scaffold_12	spliced_intron	15212744	15213043	+	asmbl_9076,asmbl_9077	none	STRG.15307.1,STRG.15307.2,Trinity_GG_8383_c0_g1_i1,Trinity_GG_8383_c0_g1_i2,blat.proc3829877.chain_3665,blat.proc3829877.chain_3666	6	Trinity_GG_8383_c0_g1_i4,blat.proc3829877.chain_3664	2
scaffold_19	retained_intron	1504585	1504605	+	asmbl_22044,asmbl_22045	none	STRG.21905.1,STRG.21905.2	2	STRG.21905.4	1
scaffold_28	alt_donor	4693998	4693999	+	asmbl_38238	none	STRG.29616.2	1	STRG.29616.1,blat.proc3829885.chain_2743	2
scaffold_14	retained_intron	8405603	8405746	-	asmbl_13290,asmbl_13293	none	STRG.17264.1,STRG.17264.3,blat.proc3829895.chain_1977	3	STRG.17264.2,STRG.17264.4	2
scaffold_20	alternate_exon	10006280	10006353	+	asmbl_26074	none	STRG.23533.2	1	STRG.23533.1,Trinity_GG_13006_c0_g1_i1,blat.proc3829883.chain_631	3
scaffold_21	spliced_intron	3189776	3190483	+	asmbl_28498,asmbl_28499	none	STRG.23934.1,blat.proc3829883.chain_1042	2	blat.proc3829883.chain_1041	1
scaffold_10	retained_intron	2675286	2675371	+	asmbl_4270,asmbl_4271	none	STRG.12077.1,STRG.12077.3,blat.proc3829877.chain_790	3	STRG.12077.2	1
scaffold_16	spliced_intron	1237655	1237855	-	asmbl_16101,asmbl_16102	none	STRG.19075.1,blat.proc3829897.chain_126,blat.proc3829897.chain_127	3	blat.proc3829897.chain_128	1
scaffold_12	alt_acceptor	15681506	15681507	-	asmbl_8231,asmbl_8232,asmbl_8233,asmbl_8234,asmbl_8235	none	STRG.15344.1,STRG.15344.2,STRG.15344.3,STRG.15344.5,blat.proc3829895.chain_19,blat.proc3829895.chain_20,blat.proc3829895.chain_21,blat.proc3829895.chain_22	8	STRG.15344.4	1
scaffold_3	spliced_intron	10849045	10849122	+	asmbl_40259	none	STRG.3517.1,Trinity_GG_1981_c0_g1_i2,blat.proc3829871.chain_3676	3	STRG.3517.2,Trinity_GG_1981_c0_g1_i1,blat.proc3829871.chain_3677	3
scaffold_18	retained_intron	8400595	8401901	+	asmbl_20860	none	blat.proc3829881.chain_2516	1	STRG.21503.1,blat.proc3829881.chain_2515	2
scaffold_27	alt_acceptor	4765455	4765456	-	asmbl_36920	none	STRG.28894.2	1	STRG.28894.1,blat.proc3829901.chain_2015	2
scaffold_18	ends_in_intron	2153290	2153290	-	asmbl_19750	none	blat.proc3829897.chain_1956	1	STRG.21103.1,STRG.21103.2,blat.proc3829897.chain_1957	3
scaffold_19	retained_intron	2780819	2780920	+	asmbl_22076,asmbl_22079,asmbl_22081	none	STRG.21950.3,STRG.21950.4,Trinity_GG_12146_c0_g1_i7,blat.proc3829881.chain_2910	4	STRG.21950.1,STRG.21950.5,blat.proc3829881.chain_2913	3
scaffold_6	ends_in_intron	2480245	2480245	-	asmbl_48074	none	Trinity_GG_21054_c0_g1_i10,blat.proc3829889.chain_3218,blat.proc3829889.chain_3221	3	STRG.7236.1,blat.proc3829889.chain_3219,blat.proc3829889.chain_3220,blat.proc3829889.chain_3223	4
scaffold_7	skipped_exon	8296258	8297094	-	asmbl_49808	none	STRG.9056.1,blat.proc3829891.chain_1235	2	STRG.9056.4,blat.proc3829891.chain_1237	2
scaffold_6	alt_donor	8172827	8172828	-	asmbl_48476,asmbl_48479,asmbl_48480,asmbl_48481	none	STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3715,blat.proc3829889.chain_3716,blat.proc3829889.chain_3724	5	STRG.7691.1,blat.proc3829889.chain_3719	2
scaffold_9	retained_intron	13640033	13640444	+	asmbl_54489	none	STRG.11641.1,Trinity_GG_6515_c0_g1_i3,Trinity_GG_6515_c1_g1_i2,blat.proc3829877.chain_423,blat.proc3829877.chain_425	5	STRG.11641.2,blat.proc3829877.chain_424	2
scaffold_6	alt_donor	11112916	11112917	-	asmbl_48677	none	STRG.7918.2	1	STRG.7918.1	1
scaffold_9	starts_in_intron	9414972	9414972	-	asmbl_55136	none	blat.proc3829891.chain_3484	1	STRG.11291.1,blat.proc3829891.chain_3486	2
scaffold_7	alt_donor	13513475	13513476	+	asmbl_51237	none	STRG.9444.2,Trinity_GG_5247_c0_g1_i2,blat.proc3829875.chain_1907	3	STRG.9444.1,Trinity_GG_5247_c0_g1_i1,blat.proc3829875.chain_1908	3
scaffold_18	retained_exon	10129688	10129978	+	asmbl_20926	none	STRG.21596.2,blat.proc3829881.chain_2567	2	STRG.21596.1,blat.proc3829881.chain_2566	2
scaffold_5	alt_donor	10198043	10198044	-	asmbl_45704	none	blat.proc3829889.chain_2388	1	STRG.6312.1,blat.proc3829889.chain_2387,blat.proc3829889.chain_2389	3
scaffold_4	alternate_exon	14287436	14287722	-	asmbl_41782,asmbl_41785	none	STRG.5038.2,STRG.5038.4,blat.proc3829889.chain_1087	3	STRG.5038.1,STRG.5038.3,blat.proc3829889.chain_1088	3
scaffold_8	retained_intron	4234132	4234567	+	asmbl_51812	none	blat.proc3829875.chain_2345	1	STRG.9899.1,blat.proc3829875.chain_2343,blat.proc3829875.chain_2344	3
scaffold_5	spliced_intron	15766781	15766917	+	asmbl_44677,asmbl_44682,asmbl_44684,asmbl_44685	none	STRG.6763.1,blat.proc3829873.chain_2876,blat.proc3829873.chain_2877,blat.proc3829873.chain_2880,blat.proc3829873.chain_2882	5	blat.proc3829873.chain_2875	1
scaffold_8	starts_in_intron	8560771	8560771	-	asmbl_52952	none	blat.proc3829891.chain_2302	1	STRG.10106.1,blat.proc3829891.chain_2300,blat.proc3829891.chain_2303	3
scaffold_13	retained_intron	16437382	16437484	+	asmbl_11555	none	Trinity_GG_9187_c0_g1_i5,blat.proc3829879.chain_1408	2	blat.proc3829879.chain_1410	1
scaffold_5	alt_acceptor	18719465	18719466	-	asmbl_46247	none	STRG.6991.1,blat.proc3829889.chain_2953	2	Trinity_GG_20893_c0_g1_i3,blat.proc3829889.chain_2954	2
scaffold_21	alt_acceptor	266744	266745	+	asmbl_28274	none	STRG.23710.1,Trinity_GG_13138_c0_g1_i1,blat.proc3829883.chain_872	3	STRG.23710.2,Trinity_GG_13138_c0_g1_i3,blat.proc3829883.chain_871	3
scaffold_1	alt_donor	4233802	4233803	+	asmbl_1648,asmbl_1651	none	STRG.253.4,blat.proc3829871.chain_231	2	STRG.253.1,STRG.253.2,STRG.253.3,blat.proc3829871.chain_224,blat.proc3829871.chain_225,blat.proc3829871.chain_227,blat.proc3829871.chain_228,blat.proc3829871.chain_229,blat.proc3829871.chain_230,blat.proc3829871.chain_232,blat.proc3829871.chain_233	11
scaffold_5	starts_in_intron	17921495	17921495	-	asmbl_46196	none	Trinity_GG_20884_c0_g1_i2,blat.proc3829889.chain_2944	2	STRG.6931.1,Trinity_GG_20884_c0_g1_i1,blat.proc3829889.chain_2943	3
scaffold_13	alt_donor	8953412	8953413	-	asmbl_9962	none	blat.proc3829895.chain_933	1	STRG.16152.1,blat.proc3829895.chain_931	2
scaffold_28	alt_acceptor	5248902	5248903	-	asmbl_37596,asmbl_37598,asmbl_37599	none	STRG.29654.1,blat.proc3829901.chain_2694,blat.proc3829901.chain_2695,blat.proc3829901.chain_2696	4	blat.proc3829901.chain_2693	1
scaffold_2	ends_in_intron	15263024	15263024	+	asmbl_25019	none	blat.proc3829871.chain_2551	1	STRG.2479.1,blat.proc3829871.chain_2553,blat.proc3829871.chain_2555	3
scaffold_1	spliced_intron	20741340	20741546	-	asmbl_1198	none	STRG.1419.1,blat.proc3829887.chain_1307	2	blat.proc3829887.chain_1308	1
scaffold_23	spliced_intron	2585757	2586468	-	asmbl_31462	none	STRG.25705.5,blat.proc3829899.chain_2752	2	STRG.25705.1,Trinity_GG_31351_c1_g1_i4,Trinity_GG_31351_c1_g1_i6,blat.proc3829899.chain_2751	4
scaffold_25	alt_acceptor	9540571	9540572	+	asmbl_33816	none	STRG.27750.1,Trinity_GG_15315_c0_g1_i1	2	STRG.27750.2	1
scaffold_12	starts_in_intron	7296496	7296496	+	asmbl_8700	none	Trinity_GG_8171_c0_g1_i1,blat.proc3829877.chain_3287	2	STRG.14793.1	1
scaffold_19	spliced_intron	8753361	8753752	+	asmbl_22352	none	STRG.22316.1,blat.proc3829881.chain_3257	2	blat.proc3829881.chain_3259	1
scaffold_25	spliced_intron	5696565	5696676	-	asmbl_34254,asmbl_34257	none	STRG.27451.1,blat.proc3829901.chain_776,blat.proc3829901.chain_779	3	blat.proc3829901.chain_777	1
scaffold_2	alt_acceptor	5440686	5440687	+	asmbl_24445	none	STRG.1951.2,blat.proc3829871.chain_1988	2	STRG.1951.3	1
scaffold_3	starts_in_intron	2961488	2961488	-	asmbl_38703	none	blat.proc3829887.chain_2831	1	STRG.3049.1,STRG.3049.2,blat.proc3829887.chain_2832,blat.proc3829887.chain_2833	4
scaffold_8	alternate_exon	12321630	12322479	-	asmbl_53189,asmbl_53195,asmbl_53196	none	STRG.10399.3,STRG.10399.4,blat.proc3829891.chain_2527,blat.proc3829891.chain_2532	4	STRG.10399.1,STRG.10399.2,blat.proc3829891.chain_2529,blat.proc3829891.chain_2530,blat.proc3829891.chain_2531	5
scaffold_6	alt_acceptor	4319968	4319969	+	asmbl_46825	none	blat.proc3829873.chain_3512	1	STRG.7402.2,blat.proc3829873.chain_3510	2
scaffold_11	starts_in_intron	2062645	2062645	+	asmbl_5312	none	Trinity_GG_7338_c0_g1_i5,blat.proc3829877.chain_1842	2	STRG.13352.1,STRG.13352.2,STRG.13352.3,blat.proc3829877.chain_1843,blat.proc3829877.chain_1846	5
scaffold_8	retained_intron	12692846	12692968	+	asmbl_52319	none	blat.proc3829875.chain_2949	1	STRG.10436.1,STRG.10436.2,blat.proc3829875.chain_2945,blat.proc3829875.chain_2946,blat.proc3829875.chain_2948	5
scaffold_9	alternate_exon	13606215	13606569	+	asmbl_54486,asmbl_54487	none	STRG.11636.1,STRG.11636.2,blat.proc3829877.chain_426,blat.proc3829877.chain_428	4	STRG.11636.3,Trinity_GG_6516_c1_g1_i1,blat.proc3829877.chain_427,blat.proc3829877.chain_429	4
scaffold_24	alt_acceptor	9071970	9071971	+	asmbl_32494	none	Trinity_GG_14897_c0_g1_i5,blat.proc3829885.chain_75	2	STRG.26929.1,STRG.26929.2,Trinity_GG_14897_c0_g1_i2,Trinity_GG_14897_c0_g1_i6,Trinity_GG_14897_c0_g1_i8,blat.proc3829885.chain_73,blat.proc3829885.chain_74,blat.proc3829885.chain_77	8
scaffold_12	spliced_intron	5636130	5636448	-	asmbl_7646,asmbl_7647	none	STRG.14701.2,blat.proc3829893.chain_3064	2	blat.proc3829893.chain_3065	1
scaffold_6	spliced_intron	8175225	8175459	-	asmbl_48473,asmbl_48479	none	blat.proc3829889.chain_3716,blat.proc3829889.chain_3720	2	STRG.7691.1,STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3719,blat.proc3829889.chain_3721,blat.proc3829889.chain_3724	6
scaffold_4	alt_acceptor	19337182	19337183	-	asmbl_42178,asmbl_42179	none	STRG.5513.2,blat.proc3829889.chain_1519	2	STRG.5513.1	1
scaffold_5	alt_acceptor	9704095	9704096	-	asmbl_45680	none	blat.proc3829889.chain_2376	1	STRG.6283.2	1
scaffold_23	ends_in_intron	6332566	6332566	+	asmbl_30910	none	blat.proc3829883.chain_2839	1	blat.proc3829883.chain_2835	1
scaffold_18	spliced_intron	8401454	8401901	+	asmbl_20859,asmbl_20861,asmbl_20862	none	STRG.21503.2,STRG.21503.3,STRG.21503.4	3	blat.proc3829881.chain_2516	1
scaffold_3	alternate_exon	1556183	1556455	-	asmbl_38677	none	STRG.2981.1,blat.proc3829887.chain_2716	2	STRG.2981.2	1
scaffold_7	starts_in_intron	118242	118242	-	asmbl_49481	none	STRG.8585.3	1	STRG.8585.1,STRG.8585.2,STRG.8585.4,STRG.8585.8,blat.proc3829891.chain_992,blat.proc3829891.chain_998	6
scaffold_19	alternate_exon	2780487	2780543	+	asmbl_22080	none	blat.proc3829881.chain_2913	1	STRG.21950.4,STRG.21950.5	2
scaffold_4	alt_acceptor	18554612	18554613	-	asmbl_42134	none	STRG.5457.2	1	STRG.5457.1,blat.proc3829889.chain_1543,blat.proc3829889.chain_1544,blat.proc3829889.chain_1545	4
scaffold_15	alt_donor	1263957	1263958	+	asmbl_13936,asmbl_13937	none	blat.proc3829879.chain_2600,blat.proc3829879.chain_2602	2	STRG.17926.1	1
scaffold_2	retained_exon	3632499	3632648	+	asmbl_24312,asmbl_24315	none	STRG.1787.1,blat.proc3829871.chain_1793	2	STRG.1787.2	1
scaffold_25	spliced_intron	5776575	5776928	+	asmbl_33580,asmbl_33581	none	STRG.27456.2,blat.proc3829885.chain_510	2	STRG.27456.1,blat.proc3829885.chain_505	2
scaffold_4	retained_intron	1307873	1308003	+	asmbl_42429	none	STRG.4169.1,Trinity_GG_2285_c0_g1_i1,blat.proc3829873.chain_474	3	STRG.4169.2,blat.proc3829873.chain_473	2
scaffold_16	ends_in_intron	14707046	14707046	+	asmbl_17510	none	blat.proc3829881.chain_649	1	STRG.19853.1,blat.proc3829881.chain_650	2
scaffold_510	spliced_intron	3172	3387	-	asmbl_46466	none	STRG.30341.3	1	blat.proc3829901.chain_3390,blat.proc3829901.chain_3391	2
scaffold_27	starts_in_intron	3016409	3016409	+	asmbl_36125	none	STRG.28769.2	1	STRG.28769.1	1
scaffold_6	spliced_intron	5265077	5265171	+	asmbl_46879	none	STRG.7492.2,blat.proc3829873.chain_3608	2	Trinity_GG_4102_c0_g1_i6,blat.proc3829873.chain_3607	2
scaffold_10	retained_intron	13525424	13525835	-	asmbl_3801	none	blat.proc3829893.chain_1430	1	STRG.12938.1,blat.proc3829893.chain_1429	2
scaffold_22	starts_in_intron	1707004	1707004	-	asmbl_29913	none	blat.proc3829899.chain_1869	1	STRG.24746.1,STRG.24746.2,Trinity_GG_30839_c0_g1_i1,Trinity_GG_30839_c0_g1_i3,blat.proc3829899.chain_1868,blat.proc3829899.chain_1870	6
scaffold_2	spliced_intron	5440602	5440711	+	asmbl_24448	none	STRG.1951.3	1	STRG.1951.1,blat.proc3829871.chain_1990	2
scaffold_23	spliced_intron	2164879	2165545	-	asmbl_31418,asmbl_31419,asmbl_31420,asmbl_31421,asmbl_31422	none	STRG.25669.1,STRG.25669.2,STRG.25669.4,STRG.25669.5,STRG.25669.7	5	STRG.25669.3,STRG.25669.6	2
scaffold_26	spliced_intron	9426206	9426291	-	asmbl_35052	none	STRG.28472.1	1	Trinity_GG_32923_c0_g1_i1	1
scaffold_25	ends_in_intron	6304659	6304659	+	asmbl_33616	none	blat.proc3829885.chain_468	1	STRG.27516.1,blat.proc3829885.chain_464,blat.proc3829885.chain_465,blat.proc3829885.chain_466,blat.proc3829885.chain_467,blat.proc3829885.chain_469,blat.proc3829885.chain_470,blat.proc3829885.chain_471,blat.proc3829885.chain_472,blat.proc3829885.chain_473,blat.proc3829885.chain_474	11
scaffold_1	spliced_intron	5736786	5736896	-	asmbl_300	none	STRG.381.1	1	Trinity_GG_17216_c0_g1_i1,blat.proc3829887.chain_250	2
scaffold_1	alternate_exon	3504312	3506169	-	asmbl_147,asmbl_158	none	STRG.217.2,STRG.217.3	2	blat.proc3829887.chain_116,blat.proc3829887.chain_117,blat.proc3829887.chain_118,blat.proc3829887.chain_120,blat.proc3829887.chain_122,blat.proc3829887.chain_124,blat.proc3829887.chain_125	7
scaffold_8	alt_acceptor	9876345	9876346	+	asmbl_52112,asmbl_52114	none	STRG.10224.1,STRG.10224.2,blat.proc3829875.chain_2735,blat.proc3829875.chain_2737	4	STRG.10224.3,blat.proc3829875.chain_2736	2
scaffold_4	alt_donor	17637314	17637315	+	asmbl_43412	none	STRG.5364.1	1	STRG.5364.2,blat.proc3829873.chain_1645	2
scaffold_2	alt_donor	1334735	1334736	+	asmbl_24209,asmbl_24210	none	STRG.1605.4,blat.proc3829871.chain_1703,blat.proc3829871.chain_1704	3	STRG.1605.3	1
scaffold_5	alternate_exon	6564689	6567768	+	asmbl_44101	none	STRG.6047.3	1	blat.proc3829873.chain_2180	1
scaffold_12	spliced_intron	15094938	15096253	-	asmbl_8182	none	Trinity_GG_25549_c1_g1_i5,blat.proc3829893.chain_3693	2	STRG.15303.1,Trinity_GG_25549_c1_g1_i1,blat.proc3829893.chain_3694	3
scaffold_20	spliced_intron	10249426	10249538	-	asmbl_27021	none	STRG.23558.1,blat.proc3829899.chain_558	2	blat.proc3829899.chain_557	1
scaffold_12	starts_in_intron	1337907	1337907	+	asmbl_8432,asmbl_8434	none	STRG.14451.2,blat.proc3829877.chain_2924,blat.proc3829877.chain_2925	3	blat.proc3829877.chain_2923	1
scaffold_4	starts_in_intron	104481	104481	-	asmbl_41042	none	blat.proc3829889.chain_227	1	STRG.4109.1,blat.proc3829889.chain_228	2
scaffold_6	skipped_exon	12550525	12553416	-	asmbl_48760,asmbl_48763	none	STRG.8010.3,blat.proc3829891.chain_318	2	STRG.8010.1,STRG.8010.2,blat.proc3829891.chain_322	3
scaffold_11	alt_donor	15654424	15654425	-	asmbl_7181	none	blat.proc3829893.chain_2732	1	STRG.14297.1,STRG.14297.2,blat.proc3829893.chain_2729,blat.proc3829893.chain_2730,blat.proc3829893.chain_2731,blat.proc3829893.chain_2733,blat.proc3829893.chain_2736,blat.proc3829893.chain_2737	8
scaffold_6	starts_in_intron	1517486	1517486	+	asmbl_46668	none	STRG.7191.2,Trinity_GG_3930_c0_g1_i2,blat.proc3829873.chain_3281	3	STRG.7191.1,blat.proc3829873.chain_3282	2
scaffold_11	alt_donor	11936926	11936927	-	asmbl_7023	none	STRG.14160.3	1	STRG.14160.2,STRG.14160.4,STRG.14160.5	3
scaffold_17	retained_intron	13196844	13197082	-	asmbl_19410	none	blat.proc3829897.chain_1736	1	STRG.20803.3,blat.proc3829897.chain_1734	2
scaffold_5	skipped_exon	6064854	6065937	+	asmbl_44059	none	STRG.6021.1,blat.proc3829873.chain_2216	2	STRG.6021.2,STRG.6021.3,blat.proc3829873.chain_2217	3
scaffold_7	alt_acceptor	18394745	18394746	-	asmbl_50288,asmbl_50289,asmbl_50292,asmbl_50294,asmbl_50295,asmbl_50296	none	STRG.9659.1,STRG.9659.2,STRG.9659.3,Trinity_GG_22427_c0_g1_i11,blat.proc3829891.chain_1868,blat.proc3829891.chain_1869,blat.proc3829891.chain_1871,blat.proc3829891.chain_1875	8	STRG.9659.4,STRG.9659.5,blat.proc3829891.chain_1873	3
scaffold_25	starts_in_intron	9503855	9503855	-	asmbl_34475,asmbl_34476	none	blat.proc3829901.chain_1006,blat.proc3829901.chain_1009	2	STRG.27747.1,blat.proc3829901.chain_1008	2
scaffold_17	starts_in_intron	12381672	12381672	-	asmbl_19372	none	blat.proc3829897.chain_1637	1	STRG.20776.1,STRG.20776.2,STRG.20776.3,STRG.20776.4,STRG.20776.5,blat.proc3829897.chain_1640	6
scaffold_16	retained_exon	8463269	8463373	+	asmbl_17190	none	STRG.19459.1	1	STRG.19459.2	1
scaffold_70	alt_acceptor	7842	7843	-	asmbl_51541	none	blat.proc3829901.chain_3187,blat.proc3829901.chain_3188	2	STRG.30086.1,STRG.30086.2	2
scaffold_5	alt_acceptor	13235139	13235140	+	asmbl_44537	none	STRG.6553.1,blat.proc3829873.chain_2683	2	STRG.6553.2,STRG.6553.3,blat.proc3829873.chain_2685	3
scaffold_19	retained_intron	11468745	11468906	-	asmbl_21603	none	blat.proc3829897.chain_3155	1	STRG.22466.1,blat.proc3829897.chain_3156	2
scaffold_14	spliced_intron	12628130	12628260	-	asmbl_13564,asmbl_13568,asmbl_13569,asmbl_13570,asmbl_13571,asmbl_13572	none	STRG.17566.1,STRG.17566.2,blat.proc3829895.chain_2326,blat.proc3829895.chain_2329,blat.proc3829895.chain_2330,blat.proc3829895.chain_2331,blat.proc3829895.chain_2332	7	blat.proc3829895.chain_2327	1
scaffold_1	starts_in_intron	45834	45834	-	asmbl_4,asmbl_6,asmbl_7	none	blat.proc3829885.chain_3729,blat.proc3829885.chain_3730,blat.proc3829885.chain_3731	3	STRG.19.3	1
scaffold_1	retained_intron	5739339	5739419	+	asmbl_1769,asmbl_1770,asmbl_1771	none	blat.proc3829871.chain_370,blat.proc3829871.chain_371,blat.proc3829871.chain_375	3	STRG.382.2,blat.proc3829871.chain_372,blat.proc3829871.chain_373	3
scaffold_1	spliced_intron	907269	907587	-	asmbl_33	none	STRG.45.1	1	STRG.45.2	1
scaffold_2	retained_exon	14740443	14740493	+	asmbl_24999,asmbl_25005	none	STRG.2472.2,blat.proc3829871.chain_2652,blat.proc3829871.chain_2654	3	STRG.2472.1,blat.proc3829871.chain_2653	2
scaffold_25	alt_donor	3705265	3705266	-	asmbl_34128	none	STRG.27301.2,blat.proc3829901.chain_603	2	STRG.27301.1,blat.proc3829901.chain_604	2
scaffold_2	starts_in_intron	15508442	15508442	-	asmbl_23653	none	blat.proc3829887.chain_2335	1	STRG.2514.1	1
scaffold_2	starts_in_intron	10123716	10123716	+	asmbl_24732	none	Trinity_GG_1246_c0_g1_i1	1	Trinity_GG_1246_c0_g1_i3	1
scaffold_10	retained_intron	8897219	8897475	-	asmbl_3538	none	blat.proc3829893.chain_1135	1	STRG.12629.1,blat.proc3829893.chain_1129,blat.proc3829893.chain_1130,blat.proc3829893.chain_1131,blat.proc3829893.chain_1133,blat.proc3829893.chain_1136	6
scaffold_3	spliced_intron	7287291	7287439	-	asmbl_38912,asmbl_38913,asmbl_38914	none	STRG.3325.1,STRG.3325.2,STRG.3325.3,blat.proc3829887.chain_3070,blat.proc3829887.chain_3071	5	STRG.3325.4,Trinity_GG_18801_c0_g1_i5,blat.proc3829887.chain_3067	3
scaffold_1	retained_exon	5137095	5137142	+	asmbl_1698	none	blat.proc3829871.chain_380	1	STRG.317.2,blat.proc3829871.chain_381	2
scaffold_10	ends_in_intron	13782047	13782047	+	asmbl_4893	none	blat.proc3829877.chain_1522	1	STRG.12969.1,STRG.12969.2,STRG.12969.3	3
scaffold_5	alt_donor	69222	69223	+	asmbl_43736,asmbl_43737	none	STRG.5568.1,STRG.5568.2	2	STRG.5568.3	1
scaffold_2	skipped_exon	9860700	9863107	-	asmbl_23410	none	STRG.2190.2	1	STRG.2190.1,STRG.2190.3,blat.proc3829887.chain_2112	3
scaffold_9	retained_intron	15384599	15384899	+	asmbl_54540	none	blat.proc3829877.chain_492	1	STRG.11728.1,blat.proc3829877.chain_490,blat.proc3829877.chain_493	3
scaffold_4	alt_acceptor	6246856	6246857	+	asmbl_42709,asmbl_42711	none	STRG.4494.1,STRG.4494.2,blat.proc3829873.chain_841	3	STRG.4494.3,blat.proc3829873.chain_839	2
scaffold_3	alt_donor	11978536	11978537	+	asmbl_40336	none	STRG.3621.1,Trinity_GG_2035_c0_g1_i2,blat.proc3829873.chain_21	3	STRG.3621.2,Trinity_GG_2035_c0_g1_i1,blat.proc3829873.chain_20	3
scaffold_18	alt_donor	6810145	6810146	+	asmbl_20714	none	STRG.21383.2,blat.proc3829881.chain_2345	2	STRG.21383.1,blat.proc3829881.chain_2346	2
scaffold_18	alternate_exon	1392173	1392292	-	asmbl_19658	none	STRG.21014.3	1	STRG.21014.1,STRG.21014.2,blat.proc3829897.chain_1932,blat.proc3829897.chain_1933,blat.proc3829897.chain_1935,blat.proc3829897.chain_1937	6
scaffold_17	retained_intron	1128141	1128819	+	asmbl_17718	none	STRG.19947.1,Trinity_GG_10926_c0_g2_i1,blat.proc3829881.chain_780	3	STRG.19947.2,blat.proc3829881.chain_783	2
scaffold_7	alt_acceptor	15595242	15595243	+	asmbl_51328	none	STRG.9548.2,Trinity_GG_5298_c0_g1_i1,blat.proc3829875.chain_1999	3	STRG.9548.3	1
scaffold_2	alternate_exon	888819	889458	+	asmbl_24149	none	blat.proc3829871.chain_1546	1	blat.proc3829871.chain_1547	1
scaffold_10	spliced_intron	13458240	13458388	-	asmbl_3786	none	STRG.12925.3	1	STRG.12925.2,blat.proc3829893.chain_1409	2
scaffold_22	starts_in_intron	5834740	5834740	-	asmbl_30057	none	blat.proc3829899.chain_2030	1	STRG.24920.1	1
scaffold_11	starts_in_intron	8707214	8707214	-	asmbl_6850	none	Trinity_GG_24761_c1_g1_i2,blat.proc3829893.chain_2300	2	STRG.13885.1,STRG.13885.2,Trinity_GG_24761_c1_g1_i1,blat.proc3829893.chain_2301	4
scaffold_2	alternate_exon	7324692	7324809	+	asmbl_24597	none	STRG.2062.3,Trinity_GG_1176_c0_g1_i1,blat.proc3829871.chain_2160	3	STRG.2062.2,Trinity_GG_1176_c0_g1_i4,blat.proc3829871.chain_2159	3
scaffold_17	alt_donor	11567777	11567778	+	asmbl_18360	none	STRG.20693.4,Trinity_GG_11317_c0_g1_i1	2	STRG.20693.1,STRG.20693.2,STRG.20693.3	3
scaffold_17	ends_in_intron	6823314	6823314	-	asmbl_19033	none	Trinity_GG_28471_c0_g2_i1,blat.proc3829897.chain_1334	2	STRG.20348.3	1
scaffold_19	skipped_exon	4792260	4793390	-	asmbl_21335	none	STRG.22043.1,Trinity_GG_29309_c0_g1_i2,blat.proc3829897.chain_2802	3	STRG.22043.2,Trinity_GG_29309_c0_g1_i1,blat.proc3829897.chain_2803	3
scaffold_22	alternate_exon	6527882	6527918	+	asmbl_29411	none	STRG.24982.2	1	STRG.24982.1,blat.proc3829883.chain_2043	2
scaffold_14	alt_acceptor	14536440	14536441	-	asmbl_13675	none	STRG.17699.1	1	STRG.17699.3,STRG.17699.4	2
scaffold_28	retained_intron	8276719	8276800	+	asmbl_38431	none	Trinity_GG_16551_c0_g1_i2,blat.proc3829885.chain_2978	2	STRG.29876.1	1
scaffold_15	alt_acceptor	9287345	9287346	+	asmbl_14328,asmbl_14329	none	STRG.18450.1,STRG.18450.2	2	blat.proc3829879.chain_3090,blat.proc3829879.chain_3091	2
scaffold_5	starts_in_intron	6658338	6658338	+	asmbl_44104	none	blat.proc3829873.chain_2177	1	STRG.6065.1,Trinity_GG_3292_c0_g1_i2,blat.proc3829873.chain_2176	3
scaffold_16	retained_intron	809774	810034	-	asmbl_16083	none	blat.proc3829895.chain_3746	1	STRG.19052.1,STRG.19052.2,STRG.19052.3,STRG.19052.4,blat.proc3829895.chain_3747,blat.proc3829895.chain_3748,blat.proc3829895.chain_3749	7
scaffold_2	alt_acceptor	1258206	1258207	-	asmbl_22865	none	blat.proc3829871.chain_1675	1	STRG.1588.1	1
scaffold_11	spliced_intron	147614	147643	-	asmbl_6350	none	blat.proc3829893.chain_1699	1	STRG.13230.2	1
scaffold_5	alt_donor	15716023	15716024	-	asmbl_46099	none	blat.proc3829889.chain_2817	1	STRG.6752.1	1
scaffold_9	retained_intron	13297054	13297098	-	asmbl_55380,asmbl_55381,asmbl_55382,asmbl_55383	none	STRG.11625.1,STRG.11625.2,STRG.11625.3,STRG.11625.5,Trinity_GG_23413_c0_g1_i1,blat.proc3829891.chain_3717	6	STRG.11625.4,STRG.11625.6,STRG.11625.7	3
scaffold_12	alternate_exon	4213632	4214485	+	asmbl_8551,asmbl_8552	none	STRG.14588.2,STRG.14588.3	2	STRG.14588.4,blat.proc3829877.chain_3116	2
scaffold_12	alt_donor	10169655	10169656	+	asmbl_8870	none	STRG.14972.2	1	STRG.14972.1	1
scaffold_11	alternate_exon	3542032	3552817	+	asmbl_5410	none	STRG.13470.1,blat.proc3829877.chain_1944,blat.proc3829877.chain_1949	3	blat.proc3829877.chain_1948	1
scaffold_17	retained_intron	8321556	8321624	+	asmbl_18103	none	Trinity_GG_11199_c0_g1_i1,blat.proc3829881.chain_1226	2	STRG.20440.1,Trinity_GG_11199_c0_g1_i2,blat.proc3829881.chain_1228	3
scaffold_3	retained_exon	14495454	14495656	-	asmbl_39327	none	Trinity_GG_19109_c0_g2_i1,blat.proc3829887.chain_3591	2	Trinity_GG_19109_c0_g1_i1,Trinity_GG_19109_c0_g1_i2,blat.proc3829887.chain_3589,blat.proc3829887.chain_3590	4
scaffold_3	starts_in_intron	13991688	13991688	+	asmbl_40438	none	STRG.3741.6,Trinity_GG_2070_c1_g1_i1,blat.proc3829873.chain_90	3	STRG.3741.1,STRG.3741.2,STRG.3741.3,STRG.3741.4,Trinity_GG_2070_c1_g1_i2,blat.proc3829873.chain_92	6
scaffold_23	ends_in_intron	10888243	10888243	+	asmbl_31174	none	blat.proc3829883.chain_3185	1	STRG.26266.1,STRG.26266.2,blat.proc3829883.chain_3183	3
scaffold_1	alt_acceptor	6980107	6980108	+	asmbl_1865,asmbl_1869	none	STRG.499.1,blat.proc3829871.chain_556,blat.proc3829871.chain_559	3	STRG.499.2	1
scaffold_1	retained_exon	18087007	18087072	-	asmbl_1086	none	STRG.1269.1,blat.proc3829887.chain_1164,blat.proc3829887.chain_1165	3	STRG.1269.2	1
scaffold_3	ends_in_intron	12703717	12703717	-	asmbl_39181	none	STRG.3662.3,Trinity_GG_19010_c1_g1_i1,blat.proc3829887.chain_3416	3	STRG.3662.1,STRG.3662.2,blat.proc3829887.chain_3415	3
scaffold_23	retained_exon	6988881	6988988	-	asmbl_31716,asmbl_31717	none	STRG.26001.1,STRG.26001.2,blat.proc3829899.chain_3072,blat.proc3829899.chain_3073	4	STRG.26001.3	1
scaffold_6	alt_acceptor	3326408	3326409	+	asmbl_46777	none	STRG.7331.1,blat.proc3829873.chain_3376	2	STRG.7331.2,STRG.7331.3,blat.proc3829873.chain_3377	3
scaffold_9	starts_in_intron	15412938	15412938	-	asmbl_55490	none	blat.proc3829893.chain_108	1	STRG.11732.1,blat.proc3829893.chain_105	2
scaffold_7	spliced_intron	5915696	5915876	-	asmbl_49711,asmbl_49712,asmbl_49713,asmbl_49714,asmbl_49715,asmbl_49718	none	STRG.8887.1,STRG.8887.2,STRG.8887.3,STRG.8887.4,STRG.8887.5,blat.proc3829891.chain_1163,blat.proc3829891.chain_1165,blat.proc3829891.chain_1167,blat.proc3829891.chain_1168	9	blat.proc3829891.chain_1164	1
scaffold_22	alternate_exon	8203221	8203381	-	asmbl_30228	none	STRG.25155.2	1	STRG.25155.1	1
scaffold_13	alt_acceptor	11945713	11945714	-	asmbl_10077	none	STRG.16316.1,Trinity_GG_26156_c0_g1_i3,blat.proc3829895.chain_1072	3	STRG.16316.2,Trinity_GG_26156_c0_g1_i1,blat.proc3829895.chain_1070,blat.proc3829895.chain_1071	4
scaffold_8	alt_acceptor	14147819	14147820	-	asmbl_53305	none	STRG.10514.3	1	STRG.10514.1,STRG.10514.2,blat.proc3829891.chain_2650,blat.proc3829891.chain_2651	4
scaffold_17	retained_intron	3990599	3990682	-	asmbl_18881	none	STRG.20147.1,blat.proc3829897.chain_1115	2	STRG.20147.2,blat.proc3829897.chain_1117	2
scaffold_15	starts_in_intron	15159567	15159567	+	asmbl_14663	none	Trinity_GG_10325_c3_g1_i1,blat.proc3829879.chain_3405	2	STRG.18895.5	1
scaffold_8	starts_in_intron	14137133	14137133	+	asmbl_52354	none	blat.proc3829875.chain_3015	1	STRG.10509.1	1
scaffold_8	starts_in_intron	14574159	14574159	+	asmbl_52375	none	Trinity_GG_5873_c0_g1_i8,blat.proc3829875.chain_3060	2	STRG.10535.1,STRG.10535.2,STRG.10535.3,STRG.10535.4,blat.proc3829875.chain_3054,blat.proc3829875.chain_3055,blat.proc3829875.chain_3057,blat.proc3829875.chain_3058	8
scaffold_13	starts_in_intron	11600814	11600814	+	asmbl_11273	none	STRG.16295.5,blat.proc3829879.chain_1016	2	STRG.16295.1,STRG.16295.2,STRG.16295.3,blat.proc3829879.chain_1014,blat.proc3829879.chain_1015,blat.proc3829879.chain_1018,blat.proc3829879.chain_1019,blat.proc3829879.chain_1020,blat.proc3829879.chain_1023	9
scaffold_11	retained_intron	17336336	17336476	+	asmbl_6195	none	Trinity_GG_7931_c0_g1_i2,blat.proc3829877.chain_2876	2	STRG.14380.1,Trinity_GG_7931_c0_g1_i1,blat.proc3829877.chain_2875	3
scaffold_21	alt_acceptor	6489515	6489516	+	asmbl_28670,asmbl_28673	none	STRG.24157.2,STRG.24157.3,blat.proc3829883.chain_1311	3	STRG.24157.1,blat.proc3829883.chain_1313	2
scaffold_6	ends_in_intron	15470496	15470496	-	asmbl_49011	none	Trinity_GG_21717_c0_g3_i1,blat.proc3829891.chain_582	2	STRG.8290.2,blat.proc3829891.chain_581	2
scaffold_6	alt_donor	13060362	13060363	-	asmbl_48810,asmbl_48811	none	STRG.8056.1,STRG.8056.2,blat.proc3829891.chain_351	3	STRG.8056.4	1
scaffold_23	retained_intron	2305426	2306387	+	asmbl_30687	none	Trinity_GG_14156_c0_g1_i5,blat.proc3829883.chain_2530	2	STRG.25687.2,Trinity_GG_14156_c0_g1_i4,blat.proc3829883.chain_2533	3
scaffold_8	starts_in_intron	8745009	8745009	+	asmbl_52019	none	blat.proc3829875.chain_2640	1	STRG.10124.1,STRG.10124.2,blat.proc3829875.chain_2641	3
scaffold_23	skipped_exon	10975457	10977281	+	asmbl_31193	none	STRG.26281.2	1	STRG.26281.1,Trinity_GG_14524_c0_g1_i13,Trinity_GG_14524_c0_g1_i8,blat.proc3829883.chain_3193,blat.proc3829883.chain_3194,blat.proc3829883.chain_3195,blat.proc3829883.chain_3199,blat.proc3829883.chain_3200,blat.proc3829883.chain_3203	9
scaffold_15	retained_intron	2557700	2557737	-	asmbl_15027	none	STRG.18024.1	1	STRG.18024.2	1
scaffold_26	retained_intron	9314784	9314931	+	asmbl_35738	none	blat.proc3829885.chain_1514	1	STRG.28479.1,STRG.28479.2,STRG.28479.3,blat.proc3829885.chain_1513,blat.proc3829885.chain_1516,blat.proc3829885.chain_1519	6
scaffold_5	alternate_exon	18506223	18506359	-	asmbl_46217	none	STRG.6973.3,blat.proc3829889.chain_2937	2	STRG.6973.2,blat.proc3829889.chain_2936	2
scaffold_2	ends_in_intron	14746298	14746298	+	asmbl_25004	none	Trinity_GG_1405_c0_g1_i6,blat.proc3829871.chain_2651	2	STRG.2472.1,STRG.2472.2,Trinity_GG_1405_c0_g1_i2,blat.proc3829871.chain_2649,blat.proc3829871.chain_2653	5
scaffold_39	ends_in_intron	34121	34121	-	asmbl_41024	none	Trinity_GG_33837_c0_g1_i2,blat.proc3829901.chain_3114	2	STRG.30019.1,STRG.30019.2,STRG.30019.3,STRG.30019.4,blat.proc3829901.chain_3117	5
scaffold_4	spliced_intron	15689788	15689823	-	asmbl_41866	none	STRG.5157.1	1	STRG.5157.2	1
scaffold_3	retained_intron	6658411	6658488	+	asmbl_40061,asmbl_40064,asmbl_40065,asmbl_40066	none	STRG.3290.1,STRG.3290.4,STRG.3290.5,blat.proc3829871.chain_3459,blat.proc3829871.chain_3461	5	STRG.3290.2,STRG.3290.3,blat.proc3829871.chain_3460,blat.proc3829871.chain_3464,blat.proc3829871.chain_3468,blat.proc3829871.chain_3469	6
scaffold_26	alternate_exon	425994	426251	+	asmbl_35213	none	STRG.27851.1	1	STRG.27850.1,blat.proc3829885.chain_853,blat.proc3829885.chain_854,blat.proc3829885.chain_855	4
scaffold_7	retained_intron	12270450	12271204	+	asmbl_51113	none	STRG.9313.6,blat.proc3829875.chain_1715	2	STRG.9313.2,STRG.9313.3,STRG.9313.5,Trinity_GG_5141_c0_g1_i1,Trinity_GG_5141_c0_g1_i2,blat.proc3829875.chain_1714	6
scaffold_10	alt_acceptor	14688186	14688187	+	asmbl_4920,asmbl_4921	none	STRG.13008.1,STRG.13008.3,blat.proc3829877.chain_1535,blat.proc3829877.chain_1537	4	STRG.13008.2	1
scaffold_13	ends_in_intron	14308818	14308818	-	asmbl_10150	none	Trinity_GG_26197_c0_g1_i2,blat.proc3829895.chain_1130	2	STRG.16463.1,blat.proc3829895.chain_1131	2
scaffold_5	retained_intron	18713113	18713290	-	asmbl_46241	none	STRG.6990.1,Trinity_GG_20882_c0_g1_i3,blat.proc3829889.chain_2940	3	STRG.6990.2,Trinity_GG_20882_c0_g1_i1,blat.proc3829889.chain_2941	3
scaffold_21	skipped_exon	2950671	2951902	+	asmbl_28450,asmbl_28451	none	STRG.23906.1,STRG.23906.2,blat.proc3829883.chain_1035,blat.proc3829883.chain_1037	4	Trinity_GG_13236_c0_g1_i3,blat.proc3829883.chain_1038	2
scaffold_28	alt_acceptor	5239329	5239330	-	asmbl_37593	none	blat.proc3829901.chain_2687	1	STRG.29652.1,STRG.29652.2,blat.proc3829901.chain_2680	3
scaffold_10	skipped_exon	6017831	6019242	-	asmbl_3336	none	blat.proc3829893.chain_893	1	STRG.12424.1,STRG.12424.2,blat.proc3829893.chain_895,blat.proc3829893.chain_896	4
scaffold_7	retained_intron	1235897	1236296	+	asmbl_50468,asmbl_50469,asmbl_50470,asmbl_50474,asmbl_50479,asmbl_50480	none	STRG.8627.2,STRG.8627.5,STRG.8627.6,Trinity_GG_4740_c0_g1_i13,Trinity_GG_4740_c0_g1_i14,Trinity_GG_4740_c0_g1_i16,blat.proc3829875.chain_1042,blat.proc3829875.chain_1043,blat.proc3829875.chain_1044,blat.proc3829875.chain_1045,blat.proc3829875.chain_1048,blat.proc3829875.chain_1049	12	STRG.8627.7,Trinity_GG_4740_c0_g1_i20,blat.proc3829875.chain_1050	3
scaffold_4	starts_in_intron	12544455	12544455	-	asmbl_41668	none	blat.proc3829889.chain_956	1	STRG.4890.1,blat.proc3829889.chain_954,blat.proc3829889.chain_955	3
scaffold_20	retained_intron	11924841	11925165	+	asmbl_26254	none	STRG.23680.1,blat.proc3829883.chain_819	2	STRG.23680.2,blat.proc3829883.chain_818	2
scaffold_13	skipped_exon	9552494	9553613	-	asmbl_9996	none	STRG.16206.1,blat.proc3829895.chain_984	2	STRG.16206.2	1
scaffold_7	ends_in_intron	4513574	4513574	+	asmbl_50618	none	blat.proc3829875.chain_1230	1	STRG.8814.1,STRG.8814.2,STRG.8814.3,Trinity_GG_4850_c0_g1_i1,Trinity_GG_4850_c0_g1_i2,blat.proc3829875.chain_1225,blat.proc3829875.chain_1226,blat.proc3829875.chain_1228,blat.proc3829875.chain_1229	9
scaffold_21	retained_exon	8538971	8539090	-	asmbl_27949,asmbl_27950,asmbl_27951	none	STRG.24364.1,STRG.24364.2,STRG.24364.3,blat.proc3829899.chain_1396,blat.proc3829899.chain_1397,blat.proc3829899.chain_1399,blat.proc3829899.chain_1584	7	blat.proc3829899.chain_1398	1
scaffold_19	retained_intron	12574951	12575303	-	asmbl_21730	none	blat.proc3829897.chain_3224	1	STRG.22574.1	1
scaffold_27	starts_in_intron	1417557	1417557	+	asmbl_35965,asmbl_35966	none	STRG.28618.2,STRG.28618.3	2	STRG.28618.1,Trinity_GG_15851_c0_g1_i2	2
scaffold_7	spliced_intron	2523136	2523439	-	asmbl_49575	none	STRG.8680.2,Trinity_GG_21969_c0_g1_i1,blat.proc3829891.chain_1046	3	STRG.8680.1,Trinity_GG_21969_c0_g1_i2,blat.proc3829891.chain_1047	3
scaffold_25	spliced_intron	3631412	3631606	+	asmbl_33431,asmbl_33433,asmbl_33435	none	STRG.27294.1,STRG.27294.2,blat.proc3829885.chain_341,blat.proc3829885.chain_342	4	blat.proc3829885.chain_343	1
scaffold_13	alt_donor	4378356	4378357	+	asmbl_10768,asmbl_10770	none	STRG.15749.3,blat.proc3829879.chain_404	2	STRG.15749.1,STRG.15749.2	2
scaffold_15	spliced_intron	13324142	13324642	+	asmbl_14571,asmbl_14573,asmbl_14575,asmbl_14578,asmbl_14579,asmbl_14581,asmbl_14582	none	STRG.18763.1,Trinity_GG_10264_c0_g1_i2,Trinity_GG_10264_c0_g1_i4,blat.proc3829879.chain_3297,blat.proc3829879.chain_3298,blat.proc3829879.chain_3300,blat.proc3829879.chain_3301,blat.proc3829879.chain_3303,blat.proc3829879.chain_3304	9	Trinity_GG_10264_c0_g1_i6,blat.proc3829879.chain_3296,blat.proc3829879.chain_3299,blat.proc3829879.chain_3302	4
scaffold_17	alternate_exon	12383155	12383575	-	asmbl_19370	none	STRG.20776.5,Trinity_GG_28651_c4_g1_i1,blat.proc3829897.chain_1644	3	STRG.20776.1,STRG.20776.2,STRG.20776.3,STRG.20776.4	4
scaffold_5	spliced_intron	16519694	16519798	-	asmbl_46128,asmbl_46129	none	STRG.6833.1,STRG.6833.2,blat.proc3829889.chain_2876,blat.proc3829889.chain_2877	4	blat.proc3829889.chain_2879	1
scaffold_19	alt_acceptor	8805899	8805900	+	asmbl_22359	none	STRG.22319.4	1	STRG.22319.1,STRG.22319.2,blat.proc3829881.chain_3246	3
scaffold_3	spliced_intron	17144659	17145212	+	asmbl_40617	none	STRG.3949.1,blat.proc3829873.chain_352	2	STRG.3949.2,STRG.3949.3,Trinity_GG_2219_c0_g1_i2	3
scaffold_8	spliced_intron	16576119	16576384	-	asmbl_53438,asmbl_53439	none	STRG.10623.1,STRG.10623.2,blat.proc3829891.chain_2780,blat.proc3829891.chain_2783	4	blat.proc3829891.chain_2781	1
scaffold_5	spliced_intron	6576837	6576949	-	asmbl_45484,asmbl_45485	none	STRG.6049.1,STRG.6049.2,blat.proc3829889.chain_2145,blat.proc3829889.chain_2147	4	Trinity_GG_20422_c0_g1_i6,blat.proc3829889.chain_2148	2
scaffold_5	skipped_exon	6289083	6289560	+	asmbl_44079,asmbl_44081	none	STRG.6032.1,Trinity_GG_3287_c0_g1_i1,blat.proc3829873.chain_2167	3	STRG.6032.2	1
scaffold_5	alt_acceptor	18174150	18174151	+	asmbl_44867	none	STRG.6948.2	1	STRG.6948.1,blat.proc3829873.chain_3056	2
scaffold_5	alt_donor	938628	938629	-	asmbl_45185	none	STRG.5631.2	1	STRG.5631.1,blat.proc3829889.chain_1685	2
scaffold_22	retained_intron	506433	506518	-	asmbl_29855	none	Trinity_GG_30818_c0_g1_i13,blat.proc3829899.chain_1827	2	STRG.24685.2,STRG.24685.3,STRG.24685.4,STRG.24685.5,Trinity_GG_30818_c0_g1_i15,Trinity_GG_30818_c0_g1_i17,Trinity_GG_30818_c0_g1_i19,Trinity_GG_30818_c0_g1_i7,Trinity_GG_30818_c0_g1_i8,blat.proc3829899.chain_1823,blat.proc3829899.chain_1824,blat.proc3829899.chain_1825,blat.proc3829899.chain_1828,blat.proc3829899.chain_1830,blat.proc3829899.chain_1831,blat.proc3829899.chain_1832,blat.proc3829899.chain_1836	17
scaffold_17	retained_intron	14874491	14874578	+	asmbl_18548	none	STRG.20942.1	1	blat.proc3829881.chain_1753	1
scaffold_14	ends_in_intron	11337421	11337421	-	asmbl_13457	none	blat.proc3829895.chain_2083	1	STRG.17450.1,STRG.17450.2,blat.proc3829895.chain_2082	3
scaffold_16	retained_intron	10448430	10449544	+	asmbl_17336	none	STRG.19602.3,Trinity_GG_10708_c1_g1_i1,blat.proc3829881.chain_426,blat.proc3829881.chain_427	4	STRG.19602.2,STRG.19602.5	2
scaffold_8	alt_acceptor	11303874	11303875	+	asmbl_52210	none	STRG.10332.2,blat.proc3829875.chain_2847	2	STRG.10332.1,blat.proc3829875.chain_2846	2
scaffold_6	alt_donor	7171943	7171944	+	asmbl_46988	none	blat.proc3829873.chain_3739	1	STRG.7621.1,STRG.7621.2,STRG.7621.3,STRG.7621.4	4
scaffold_13	spliced_intron	6396106	6396402	+	asmbl_10908,asmbl_10915	none	STRG.15914.3,STRG.15914.4,Trinity_GG_8718_c0_g1_i9,blat.proc3829879.chain_552	4	STRG.15914.2,Trinity_GG_8718_c0_g1_i4,Trinity_GG_8718_c0_g1_i6,blat.proc3829879.chain_550,blat.proc3829879.chain_553	5
scaffold_4	skipped_exon	8987818	8989559	-	asmbl_41536,asmbl_41538,asmbl_41539,asmbl_41540	none	STRG.4717.1,STRG.4717.2,STRG.4717.3,STRG.4717.4,blat.proc3829889.chain_759	5	STRG.4717.5	1
scaffold_20	alt_acceptor	8034855	8034856	+	asmbl_25898,asmbl_25899	none	STRG.23341.1,STRG.23341.3	2	STRG.23341.2,STRG.23341.4	2
scaffold_18	spliced_intron	5725934	5726148	+	asmbl_20628	none	STRG.21309.1,Trinity_GG_11740_c0_g1_i1,blat.proc3829881.chain_2231	3	Trinity_GG_11740_c0_g1_i2,blat.proc3829881.chain_2230	2
scaffold_10	retained_intron	8896936	8897048	-	asmbl_3539,asmbl_3542	none	blat.proc3829893.chain_1131,blat.proc3829893.chain_1136	2	STRG.12629.1,blat.proc3829893.chain_1125,blat.proc3829893.chain_1127,blat.proc3829893.chain_1129,blat.proc3829893.chain_1130,blat.proc3829893.chain_1132,blat.proc3829893.chain_1133,blat.proc3829893.chain_1134,blat.proc3829893.chain_1135	9
scaffold_9	starts_in_intron	13272231	13272231	+	asmbl_54467	none	Trinity_GG_6470_c0_g1_i1,blat.proc3829877.chain_364	2	STRG.11614.1,blat.proc3829877.chain_363	2
scaffold_28	alt_acceptor	5241993	5241994	+	asmbl_38275	none	STRG.29653.3	1	STRG.29653.1,Trinity_GG_16447_c0_g1_i2,Trinity_GG_16447_c0_g1_i3,blat.proc3829885.chain_2778,blat.proc3829885.chain_2779	5
scaffold_4	alt_acceptor	4420007	4420008	+	asmbl_42594,asmbl_42596	none	STRG.4339.1,STRG.4339.3,Trinity_GG_2416_c0_g1_i3,blat.proc3829873.chain_727	4	STRG.4339.2	1
scaffold_14	spliced_intron	2263195	2263335	-	asmbl_12908	none	STRG.16824.1,blat.proc3829895.chain_1521	2	blat.proc3829895.chain_1520	1
scaffold_4	spliced_intron	16315868	16316024	+	asmbl_43297,asmbl_43298	none	STRG.5205.4,Trinity_GG_2902_c0_g1_i6,blat.proc3829873.chain_1511,blat.proc3829873.chain_1514	4	STRG.5205.2,blat.proc3829873.chain_1512	2
scaffold_14	retained_intron	8695572	8695770	-	asmbl_13320	none	blat.proc3829895.chain_2018	1	STRG.17289.1,blat.proc3829895.chain_2016,blat.proc3829895.chain_2019	3
scaffold_3	alternate_exon	6184449	6196909	-	asmbl_38863	none	STRG.3262.1,blat.proc3829887.chain_3015,blat.proc3829887.chain_3017	3	STRG.3262.2,Trinity_GG_18794_c1_g2_i1,blat.proc3829887.chain_3016	3
scaffold_3	ends_in_intron	6167163	6167163	-	asmbl_38859	none	blat.proc3829887.chain_2945	1	blat.proc3829887.chain_2941,blat.proc3829887.chain_2942,blat.proc3829887.chain_2944,blat.proc3829887.chain_2946	4
scaffold_20	alt_donor	7146619	7146620	-	asmbl_26800	none	STRG.23267.1	1	blat.proc3829883.chain_388	1
scaffold_2	alternate_exon	18307275	18307364	-	asmbl_23792	none	STRG.2713.3	1	STRG.2713.1,blat.proc3829887.chain_2540	2
scaffold_10	retained_exon	5175651	5175802	+	asmbl_4428	none	STRG.12337.3,blat.proc3829877.chain_983	2	STRG.12337.1,STRG.12337.2,blat.proc3829877.chain_984,blat.proc3829877.chain_985	4
scaffold_23	alt_donor	6912395	6912396	-	asmbl_31711	none	STRG.25998.2,blat.proc3829899.chain_3043	2	STRG.25998.1,STRG.25998.3,blat.proc3829899.chain_3044	3
scaffold_21	starts_in_intron	8518132	8518132	-	asmbl_27947	none	blat.proc3829899.chain_1403	1	STRG.24362.1,STRG.24362.2,blat.proc3829899.chain_1404,blat.proc3829899.chain_1405	4
scaffold_17	spliced_intron	9006765	9006969	+	asmbl_18181	none	STRG.20513.1,blat.proc3829881.chain_1321	2	blat.proc3829881.chain_1318	1
scaffold_27	spliced_intron	931032	931338	-	asmbl_36672	none	STRG.28569.3	1	STRG.28569.1,STRG.28569.2,blat.proc3829901.chain_1746,blat.proc3829901.chain_1747,blat.proc3829901.chain_1748	5
scaffold_25	alt_acceptor	9047045	9047046	-	asmbl_34448	none	STRG.27702.3,blat.proc3829901.chain_988	2	STRG.27702.1,blat.proc3829901.chain_982,blat.proc3829901.chain_985,blat.proc3829901.chain_986	4
scaffold_6	alt_acceptor	9098573	9098574	+	asmbl_47139,asmbl_47140	none	STRG.7781.2,STRG.7781.3	2	STRG.7781.1,blat.proc3829875.chain_162	2
scaffold_19	skipped_exon	5643838	5644201	-	asmbl_21392	none	blat.proc3829897.chain_2889	1	blat.proc3829897.chain_2890	1
scaffold_17	spliced_intron	9088832	9088926	-	asmbl_19197,asmbl_19198	none	STRG.20530.1,blat.proc3829897.chain_1482	2	STRG.20530.2,STRG.20530.3,blat.proc3829897.chain_1483	3
scaffold_10	alternate_exon	1165192	1165226	+	asmbl_4192	none	STRG.11995.1,blat.proc3829877.chain_706	2	STRG.11995.2,STRG.11995.3,blat.proc3829877.chain_704,blat.proc3829877.chain_705	4
scaffold_12	skipped_exon	2721443	2722927	+	asmbl_8479	none	Trinity_GG_8024_c0_g1_i4,blat.proc3829877.chain_3017	2	Trinity_GG_8024_c0_g1_i5,blat.proc3829877.chain_3019	2
scaffold_20	starts_in_intron	4509999	4509999	-	asmbl_26664	none	blat.proc3829899.chain_44	1	STRG.23117.1,blat.proc3829899.chain_43,blat.proc3829899.chain_45	3
scaffold_1	alt_acceptor	1908010	1908011	+	asmbl_1514,asmbl_1515	none	STRG.115.1,blat.proc3829871.chain_132,blat.proc3829871.chain_134	3	STRG.115.2,STRG.115.3	2
scaffold_20	ends_in_intron	4479407	4479407	-	asmbl_26657	none	Trinity_GG_29865_c0_g1_i3,blat.proc3829899.chain_57	2	STRG.23113.1,STRG.23113.2,STRG.23113.3,blat.proc3829899.chain_55,blat.proc3829899.chain_56,blat.proc3829899.chain_58,blat.proc3829899.chain_59	7
scaffold_19	starts_in_intron	5574925	5574925	-	asmbl_21376	none	blat.proc3829897.chain_2859	1	STRG.22109.1,blat.proc3829897.chain_2860	2
scaffold_10	spliced_intron	13471231	13471345	-	asmbl_3789,asmbl_3790,asmbl_3792,asmbl_3794	none	STRG.12931.2,STRG.12931.3,STRG.12931.4,blat.proc3829893.chain_1417,blat.proc3829893.chain_1418	5	STRG.12931.1,Trinity_GG_24242_c0_g2_i3,blat.proc3829893.chain_1416,blat.proc3829893.chain_1419	4
scaffold_28	alt_acceptor	5914962	5914963	+	asmbl_38307,asmbl_38308	none	STRG.29698.1,STRG.29698.2,Trinity_GG_16459_c0_g1_i3,blat.proc3829885.chain_2805	4	STRG.29698.3,Trinity_GG_16459_c0_g1_i1,blat.proc3829885.chain_2804	3
scaffold_23	retained_intron	2164879	2165545	-	asmbl_31417,asmbl_31423	none	STRG.25669.3,STRG.25669.6	2	STRG.25669.1,STRG.25669.2,STRG.25669.4,STRG.25669.5,STRG.25669.7	5
scaffold_9	alt_donor	12012109	12012110	+	asmbl_54391	none	STRG.11515.2	1	STRG.11515.1	1
scaffold_4	spliced_intron	16480998	16481293	-	asmbl_41927	none	STRG.5226.3,blat.proc3829889.chain_1292	2	STRG.5226.2,Trinity_GG_19942_c0_g2_i2,blat.proc3829889.chain_1293,blat.proc3829889.chain_1294	4
scaffold_15	spliced_intron	5144985	5145081	+	asmbl_14133,asmbl_14134	none	STRG.18208.1,blat.proc3829879.chain_2836,blat.proc3829879.chain_2838	3	blat.proc3829879.chain_2839	1
scaffold_13	alternate_exon	7718308	7720799	-	asmbl_9863	none	STRG.16043.1,Trinity_GG_26001_c0_g1_i3,blat.proc3829895.chain_746,blat.proc3829895.chain_748	4	blat.proc3829895.chain_749	1
scaffold_2	starts_in_intron	11670853	11670853	+	asmbl_24801	none	Trinity_GG_1276_c0_g1_i2,blat.proc3829871.chain_2383	2	STRG.2278.1,blat.proc3829871.chain_2382,blat.proc3829871.chain_2384	3
scaffold_1	alt_donor	4234166	4234167	+	asmbl_1642,asmbl_1643,asmbl_1649,asmbl_1651,asmbl_1652	none	STRG.253.2,STRG.253.3,blat.proc3829871.chain_225,blat.proc3829871.chain_230,blat.proc3829871.chain_231,blat.proc3829871.chain_232,blat.proc3829871.chain_233	7	STRG.253.1,STRG.253.4,blat.proc3829871.chain_224,blat.proc3829871.chain_227,blat.proc3829871.chain_228,blat.proc3829871.chain_229	6
scaffold_3	spliced_intron	14495657	14495730	-	asmbl_39327	none	blat.proc3829887.chain_3591	1	STRG.3788.1	1
scaffold_11	alt_acceptor	9717584	9717585	-	asmbl_6937	none	STRG.13975.1,blat.proc3829893.chain_2407	2	Trinity_GG_24826_c0_g1_i1,blat.proc3829893.chain_2405	2
scaffold_22	alternate_exon	8190689	8190797	-	asmbl_30222	none	STRG.25152.2	1	STRG.25152.1,STRG.25152.3,blat.proc3829899.chain_2243	3
scaffold_13	retained_exon	7269334	7269452	-	asmbl_9829,asmbl_9833	none	STRG.16009.1,blat.proc3829895.chain_808,blat.proc3829895.chain_811	3	blat.proc3829895.chain_807,blat.proc3829895.chain_809	2
scaffold_17	starts_in_intron	10037857	10037857	-	asmbl_19271,asmbl_19272,asmbl_19273	none	STRG.20608.4,STRG.20608.5,Trinity_GG_28623_c0_g1_i2,Trinity_GG_28623_c0_g1_i3,Trinity_GG_28623_c0_g1_i4,blat.proc3829897.chain_1586,blat.proc3829897.chain_1587,blat.proc3829897.chain_1589	8	STRG.20608.1,STRG.20608.2,STRG.20608.6	3
scaffold_12	spliced_intron	9506497	9506614	+	asmbl_8830	none	STRG.14923.1,blat.proc3829877.chain_3373	2	blat.proc3829877.chain_3374	1
scaffold_13	alternate_exon	9328290	9328370	-	asmbl_9978	none	blat.proc3829895.chain_959	1	STRG.16187.1	1
scaffold_28	spliced_intron	5014513	5014754	+	asmbl_38251	none	STRG.29628.3,Trinity_GG_16433_c0_g2_i4,blat.proc3829885.chain_2755	3	Trinity_GG_16433_c0_g2_i1,blat.proc3829885.chain_2756	2
scaffold_18	retained_exon	7241822	7241881	+	asmbl_20760	none	STRG.21440.1,blat.proc3829881.chain_2384	2	STRG.21440.2,blat.proc3829881.chain_2385	2
scaffold_3	starts_in_intron	17345176	17345176	+	asmbl_40630	none	blat.proc3829873.chain_364	1	STRG.3962.1,blat.proc3829873.chain_361	2
scaffold_22	retained_exon	7122703	7122873	+	asmbl_29447,asmbl_29451	none	STRG.25032.1,Trinity_GG_13867_c0_g1_i2,blat.proc3829883.chain_2115,blat.proc3829883.chain_2119	4	STRG.25032.2,Trinity_GG_13867_c0_g1_i3,blat.proc3829883.chain_2116,blat.proc3829883.chain_2118	4
scaffold_25	spliced_intron	996826	996894	-	asmbl_34006,asmbl_34007	none	STRG.27141.1,blat.proc3829901.chain_442,blat.proc3829901.chain_443	3	blat.proc3829901.chain_444	1
scaffold_15	alt_donor	15339466	15339467	+	asmbl_14699	none	STRG.18905.1,Trinity_GG_10365_c0_g1_i1,blat.proc3829879.chain_3495	3	STRG.18905.2	1
scaffold_4	alt_acceptor	6189052	6189053	-	asmbl_41402,asmbl_41404,asmbl_41405	none	STRG.4487.2,Trinity_GG_19491_c0_g1_i1,blat.proc3829889.chain_541,blat.proc3829889.chain_543	4	STRG.4487.1,STRG.4487.3,Trinity_GG_19491_c0_g1_i3,blat.proc3829889.chain_542	4
scaffold_20	skipped_exon	10249203	10249538	-	asmbl_27020	none	STRG.23558.2,blat.proc3829899.chain_556	2	STRG.23558.1,blat.proc3829899.chain_558	2
scaffold_18	starts_in_intron	815245	815245	+	asmbl_20349	none	blat.proc3829881.chain_1865	1	STRG.20995.1,blat.proc3829881.chain_1864,blat.proc3829881.chain_1868,blat.proc3829881.chain_1869	4
scaffold_7	skipped_exon	17610958	17612226	+	asmbl_51370	none	STRG.9601.2	1	STRG.9601.1,blat.proc3829875.chain_2006	2
scaffold_26	alt_donor	9008840	9008841	-	asmbl_35028	none	STRG.28447.2	1	STRG.28447.1,blat.proc3829901.chain_1589	2
scaffold_1	ends_in_intron	14618880	14618880	+	asmbl_2385	none	blat.proc3829871.chain_1070	1	STRG.1059.1,STRG.1059.2,blat.proc3829871.chain_1068	3
scaffold_7	retained_intron	5916762	5917155	-	asmbl_49711	none	STRG.8887.5,Trinity_GG_22041_c0_g1_i6,blat.proc3829891.chain_1166	3	STRG.8887.3,blat.proc3829891.chain_1164	2
scaffold_7	alt_donor	15267681	15267682	+	asmbl_51317	none	STRG.9532.3	1	STRG.9532.1,STRG.9532.2,STRG.9532.4,STRG.9532.5,blat.proc3829875.chain_1981,blat.proc3829875.chain_1984,blat.proc3829875.chain_1985,blat.proc3829875.chain_1986,blat.proc3829875.chain_1987	9
scaffold_21	starts_in_intron	2655800	2655800	-	asmbl_27515	none	blat.proc3829899.chain_908	1	STRG.23889.1,STRG.23889.2,STRG.23889.3,STRG.23889.4,Trinity_GG_30293_c0_g1_i10,Trinity_GG_30293_c0_g1_i6,blat.proc3829899.chain_910,blat.proc3829899.chain_913,blat.proc3829899.chain_914,blat.proc3829899.chain_915	10
scaffold_20	retained_intron	1469616	1470058	-	asmbl_26507	none	blat.proc3829897.chain_3656	1	STRG.22854.1,blat.proc3829897.chain_3657	2
scaffold_13	alt_acceptor	4602269	4602270	-	asmbl_9610	none	Trinity_GG_25880_c0_g1_i1,blat.proc3829895.chain_530	2	STRG.15781.1	1
scaffold_1	starts_in_intron	5960107	5960107	+	asmbl_1793	none	blat.proc3829871.chain_460	1	blat.proc3829871.chain_459	1
scaffold_15	alternate_exon	6883556	6883726	-	asmbl_15277,asmbl_15284	none	Trinity_GG_27246_c0_g1_i4,blat.proc3829895.chain_2938,blat.proc3829895.chain_2941	3	blat.proc3829895.chain_2933	1
scaffold_4	retained_intron	12690853	12690998	-	asmbl_41696	none	STRG.4910.2,blat.proc3829889.chain_922	2	STRG.4910.1,blat.proc3829889.chain_919,blat.proc3829889.chain_920	3
scaffold_16	ends_in_intron	8087742	8087742	-	asmbl_16408,asmbl_16410	none	Trinity_GG_27908_c0_g2_i6,blat.proc3829897.chain_446,blat.proc3829897.chain_448	3	STRG.19441.1,blat.proc3829897.chain_447,blat.proc3829897.chain_449	3
scaffold_28	alt_acceptor	2190092	2190093	-	asmbl_37342	none	STRG.29363.1	1	STRG.29363.2,blat.proc3829901.chain_2412	2
scaffold_17	alt_acceptor	4688374	4688375	-	asmbl_18927	none	STRG.20192.2,blat.proc3829897.chain_1141	2	STRG.20192.1,blat.proc3829897.chain_1142	2
scaffold_17	starts_in_intron	9023649	9023649	+	asmbl_18187	none	STRG.20519.2,blat.proc3829881.chain_1313	2	STRG.20519.1,blat.proc3829881.chain_1312	2
scaffold_17	alternate_exon	7849692	7849895	+	asmbl_18053	none	blat.proc3829881.chain_1176	1	STRG.20399.3	1
scaffold_7	alt_donor	9788565	9788566	-	asmbl_49881	none	STRG.9160.2	1	STRG.9160.1	1
scaffold_19	alt_acceptor	9461404	9461405	+	asmbl_22402	none	STRG.22363.1,blat.proc3829881.chain_3288	2	STRG.22363.2,blat.proc3829881.chain_3289	2
scaffold_5	spliced_intron	5061259	5061405	+	asmbl_44006,asmbl_44007	none	STRG.5955.1,Trinity_GG_3232_c0_g1_i2,blat.proc3829873.chain_2050,blat.proc3829873.chain_2052	4	Trinity_GG_3232_c0_g1_i3,blat.proc3829873.chain_2051	2
scaffold_17	spliced_intron	9532452	9532877	+	asmbl_18229,asmbl_18230,asmbl_18232	none	STRG.20566.1,STRG.20566.2,Trinity_GG_11250_c0_g1_i4,Trinity_GG_11250_c0_g1_i7,blat.proc3829881.chain_1350,blat.proc3829881.chain_1352	6	blat.proc3829881.chain_1349,blat.proc3829881.chain_1353	2
scaffold_1	alt_acceptor	1908451	1908452	+	asmbl_1513,asmbl_1515	none	STRG.115.3,blat.proc3829871.chain_132	2	STRG.115.1,STRG.115.2,blat.proc3829871.chain_134	3
scaffold_20	alternate_exon	11479243	11479516	+	asmbl_26214	none	STRG.23639.4	1	STRG.23639.1,STRG.23639.2,STRG.23639.3,Trinity_GG_13053_c0_g1_i2,Trinity_GG_13053_c0_g1_i3,Trinity_GG_13053_c0_g1_i4,blat.proc3829883.chain_714,blat.proc3829883.chain_715,blat.proc3829883.chain_716,blat.proc3829883.chain_717	10
scaffold_3	spliced_intron	4953609	4954271	+	asmbl_40006	none	STRG.3189.1,blat.proc3829871.chain_3400	2	Trinity_GG_1814_c0_g1_i2,blat.proc3829871.chain_3401	2
scaffold_1	starts_in_intron	18354504	18354504	+	asmbl_2543	none	Trinity_GG_747_c0_g1_i1,blat.proc3829871.chain_1323	2	STRG.1283.1	1
scaffold_11	retained_intron	9083178	9083266	-	asmbl_6894	none	STRG.13931.1,Trinity_GG_24787_c0_g1_i3,blat.proc3829893.chain_2349	3	blat.proc3829893.chain_2350,blat.proc3829893.chain_2351	2
scaffold_17	alt_acceptor	2740807	2740808	-	asmbl_18824	none	STRG.20064.2,Trinity_GG_28285_c1_g1_i1,blat.proc3829897.chain_1037	3	STRG.20064.3	1
scaffold_12	retained_intron	10187619	10188527	-	asmbl_7863,asmbl_7864	none	STRG.14979.3,blat.proc3829893.chain_3402	2	STRG.14979.1,blat.proc3829893.chain_3401,blat.proc3829893.chain_3403	3
scaffold_17	alt_donor	14633326	14633327	+	asmbl_18537	none	blat.proc3829881.chain_1774	1	STRG.20934.1,STRG.20934.3	2
scaffold_2	alt_donor	5375677	5375678	-	asmbl_23171	none	STRG.1946.3,blat.proc3829887.chain_1846	2	STRG.1946.2,blat.proc3829887.chain_1848	2
scaffold_1	alt_acceptor	6980104	6980105	+	asmbl_1866	none	STRG.499.2	1	STRG.499.1,blat.proc3829871.chain_556,blat.proc3829871.chain_559	3
scaffold_18	ends_in_intron	7740416	7740416	-	asmbl_20012	none	Trinity_GG_29023_c1_g1_i1,blat.proc3829897.chain_2322	2	STRG.21470.1,blat.proc3829897.chain_2320,blat.proc3829897.chain_2321	3
scaffold_10	starts_in_intron	6011259	6011259	+	asmbl_4496	none	blat.proc3829877.chain_1053	1	STRG.12423.1,blat.proc3829877.chain_1054	2
scaffold_16	starts_in_intron	5496781	5496781	-	asmbl_16288	none	Trinity_GG_27852_c0_g1_i1,blat.proc3829897.chain_335	2	STRG.19293.1,Trinity_GG_27852_c0_g1_i2,blat.proc3829897.chain_336	3
scaffold_13	alt_donor	11981347	11981348	-	asmbl_10082	none	STRG.16317.1	1	blat.proc3829895.chain_1066	1
scaffold_11	retained_intron	9829435	9829603	+	asmbl_5866,asmbl_5871,asmbl_5875	none	STRG.13996.1,STRG.13996.4,Trinity_GG_7729_c0_g1_i9,blat.proc3829877.chain_2506,blat.proc3829877.chain_2513,blat.proc3829877.chain_2514	6	STRG.13996.3,blat.proc3829877.chain_2511	2
scaffold_6	starts_in_intron	11011719	11011719	-	asmbl_48664	none	STRG.7909.1,blat.proc3829891.chain_199	2	STRG.7909.2,STRG.7909.3,STRG.7909.4,blat.proc3829891.chain_198	4
scaffold_26	ends_in_intron	9594392	9594392	-	asmbl_35060	none	Trinity_GG_32925_c0_g1_i1,blat.proc3829901.chain_1615	2	STRG.28490.1,Trinity_GG_32925_c0_g1_i2,blat.proc3829901.chain_1614	3
scaffold_3	alt_acceptor	6248046	6248047	-	asmbl_38884,asmbl_38886	none	STRG.3263.2,blat.proc3829887.chain_3031	2	STRG.3263.1,STRG.3263.7,blat.proc3829887.chain_3032,blat.proc3829887.chain_3033,blat.proc3829887.chain_3035	5
scaffold_5	starts_in_intron	5051753	5051753	+	asmbl_44001	none	Trinity_GG_3276_c0_g2_i4,blat.proc3829873.chain_2142	2	STRG.5949.1,blat.proc3829873.chain_2145	2
scaffold_13	alt_donor	12244092	12244093	+	asmbl_11325,asmbl_11326	none	STRG.16345.1,STRG.16345.3	2	STRG.16345.2	1
scaffold_13	alternate_exon	15636036	15636464	+	asmbl_11500	none	STRG.16594.1,blat.proc3829879.chain_1348	2	STRG.16594.2	1
scaffold_5	ends_in_intron	5057876	5057876	+	asmbl_44004	none	blat.proc3829873.chain_2141	1	STRG.5949.1,STRG.5949.2,STRG.5949.3,Trinity_GG_3276_c0_g2_i4,blat.proc3829873.chain_2142,blat.proc3829873.chain_2144,blat.proc3829873.chain_2145	7
scaffold_3	retained_intron	935722	935829	-	asmbl_38641	none	Trinity_GG_18622_c0_g1_i2,blat.proc3829887.chain_2738	2	STRG.2915.1,blat.proc3829887.chain_2737	2
scaffold_4	alternate_exon	14035678	14036506	+	asmbl_43168	none	STRG.5023.1,blat.proc3829873.chain_1362	2	STRG.5023.2	1
scaffold_12	alt_acceptor	16182541	16182542	-	asmbl_8244,asmbl_8246	none	STRG.15358.1,STRG.15358.2,Trinity_GG_25619_c0_g1_i2,blat.proc3829895.chain_84	4	STRG.15358.3,Trinity_GG_25619_c0_g1_i1,blat.proc3829895.chain_85	3
scaffold_7	alt_donor	7186370	7186371	+	asmbl_50788,asmbl_50789	none	STRG.8964.1,STRG.8964.2,blat.proc3829875.chain_1425,blat.proc3829875.chain_1426	4	STRG.8964.3	1
scaffold_13	spliced_intron	8955171	8955239	+	asmbl_11147,asmbl_11148,asmbl_11149,asmbl_11150	none	STRG.16151.2,STRG.16151.3,blat.proc3829879.chain_863,blat.proc3829879.chain_864,blat.proc3829879.chain_865	5	STRG.16151.1,blat.proc3829879.chain_862	2
scaffold_2	retained_intron	4599512	4599633	+	asmbl_24391	none	STRG.1887.2	1	STRG.1887.1,blat.proc3829871.chain_1860	2
scaffold_9	spliced_intron	11815085	11815410	+	asmbl_54366	none	STRG.11485.1,Trinity_GG_6411_c0_g2_i1,blat.proc3829877.chain_265	3	Trinity_GG_6411_c0_g1_i1,blat.proc3829877.chain_263	2
scaffold_4	skipped_exon	8989635	8991065	-	asmbl_41536	none	STRG.4717.1,blat.proc3829889.chain_759	2	STRG.4717.4	1
scaffold_2	alt_acceptor	6633150	6633151	-	asmbl_23240,asmbl_23241	none	STRG.2025.2,STRG.2025.3	2	STRG.2025.1,Trinity_GG_18153_c0_g1_i8,blat.proc3829887.chain_1945,blat.proc3829887.chain_1946,blat.proc3829887.chain_1947,blat.proc3829887.chain_1948,blat.proc3829887.chain_1949	7
scaffold_21	spliced_intron	5536369	5536490	-	asmbl_27700,asmbl_27702,asmbl_27703,asmbl_27705	none	STRG.24073.1,STRG.24073.2,blat.proc3829899.chain_1165,blat.proc3829899.chain_1168	4	STRG.24073.3,Trinity_GG_30443_c0_g1_i6,blat.proc3829899.chain_1163,blat.proc3829899.chain_1166,blat.proc3829899.chain_1167	5
scaffold_7	retained_intron	12277542	12278368	+	asmbl_51120	none	blat.proc3829875.chain_1776	1	STRG.9315.1,blat.proc3829875.chain_1777,blat.proc3829875.chain_1779	3
scaffold_10	retained_intron	976769	976863	-	asmbl_2939	none	Trinity_GG_23642_c0_g1_i2	1	STRG.11970.1,STRG.11970.2,Trinity_GG_23642_c0_g1_i1,Trinity_GG_23642_c0_g1_i4	4
scaffold_9	alt_donor	16664922	16664923	-	asmbl_55571	none	STRG.11800.2,blat.proc3829893.chain_192	2	STRG.11800.1,blat.proc3829893.chain_191	2
scaffold_13	starts_in_intron	9214930	9214930	+	asmbl_11158	none	blat.proc3829879.chain_909	1	STRG.16165.1,blat.proc3829879.chain_908	2
scaffold_5	alt_acceptor	11643332	11643333	+	asmbl_44426	none	STRG.6416.2,blat.proc3829873.chain_2518	2	STRG.6416.1	1
scaffold_1150	skipped_exon	1346	2564	+	asmbl_7385	none	STRG.30530.1,blat.proc3829885.chain_3482	2	STRG.30530.2	1
scaffold_14	ends_in_intron	10495892	10495892	+	asmbl_12308	none	blat.proc3829879.chain_2101	1	STRG.17385.1,blat.proc3829879.chain_2100	2
scaffold_23	alt_donor	2997401	2997402	-	asmbl_31495	none	STRG.25729.5	1	STRG.25729.1,STRG.25729.4	2
scaffold_18	spliced_intron	9628583	9628642	-	asmbl_20100,asmbl_20101	none	blat.proc3829897.chain_2401,blat.proc3829897.chain_2402	2	STRG.21568.1,STRG.21568.2	2
scaffold_27	alt_acceptor	9965586	9965587	+	asmbl_36509	none	STRG.29210.3	1	STRG.29210.1,STRG.29210.2,blat.proc3829885.chain_2348,blat.proc3829885.chain_2349	4
scaffold_21	spliced_intron	5549480	5549620	+	asmbl_28595,asmbl_28596,asmbl_28598	none	STRG.24076.1,STRG.24076.2,blat.proc3829883.chain_1234,blat.proc3829883.chain_1235,blat.proc3829883.chain_1236	5	Trinity_GG_13347_c0_g1_i4,blat.proc3829883.chain_1237	2
scaffold_5	starts_in_intron	9655757	9655757	+	asmbl_44291	none	blat.proc3829873.chain_2369	1	STRG.6270.1,STRG.6270.2,blat.proc3829873.chain_2367,blat.proc3829873.chain_2368	4
scaffold_3	retained_intron	14187141	14189188	-	asmbl_39279,asmbl_39280,asmbl_39282	none	STRG.3759.1,STRG.3759.3,STRG.3759.4,Trinity_GG_19089_c0_g1_i1,blat.proc3829887.chain_3545	5	STRG.3759.2,blat.proc3829887.chain_3546	2
scaffold_1	alt_acceptor	1907990	1907991	+	asmbl_1513,asmbl_1516	none	STRG.115.2,STRG.115.3	2	STRG.115.1,blat.proc3829871.chain_132,blat.proc3829871.chain_134	3
scaffold_4	alt_donor	18456227	18456228	-	asmbl_42118	none	STRG.5446.1,blat.proc3829889.chain_1456	2	STRG.5446.2,blat.proc3829889.chain_1457	2
scaffold_19	alt_acceptor	11522276	11522277	-	asmbl_21629	none	STRG.22476.3	1	STRG.22476.1,STRG.22476.2,STRG.22476.4,blat.proc3829897.chain_3123,blat.proc3829897.chain_3124	5
scaffold_2	alt_donor	5376202	5376203	-	asmbl_23169	none	STRG.1946.2,blat.proc3829887.chain_1848	2	STRG.1946.3,blat.proc3829887.chain_1846	2
scaffold_7	alternate_exon	6188517	6188670	+	asmbl_50732,asmbl_50733	none	STRG.8903.2,Trinity_GG_4908_c0_g1_i1,Trinity_GG_4908_c0_g1_i2,Trinity_GG_4908_c0_g1_i3	4	STRG.8903.1,blat.proc3829875.chain_1327,blat.proc3829875.chain_1328,blat.proc3829875.chain_1329	4
scaffold_24	starts_in_intron	6470693	6470693	+	asmbl_32329	none	Trinity_GG_14753_c0_g1_i1,blat.proc3829883.chain_3588	2	STRG.26682.1	1
scaffold_5	alternate_exon	10534512	10534616	-	asmbl_45745	none	STRG.6332.4	1	STRG.6332.2,blat.proc3829889.chain_2348	2
scaffold_10	spliced_intron	11093689	11093875	+	asmbl_4723	none	STRG.12765.2,Trinity_GG_7028_c0_g1_i1,blat.proc3829877.chain_1306	3	STRG.12765.1,Trinity_GG_7028_c0_g1_i2,blat.proc3829877.chain_1307	3
scaffold_8	starts_in_intron	17814873	17814873	+	asmbl_52504,asmbl_52505,asmbl_52506	none	blat.proc3829875.chain_3119,blat.proc3829875.chain_3123,blat.proc3829875.chain_3125	3	STRG.10687.1,STRG.10687.2,STRG.10687.4,Trinity_GG_5905_c0_g1_i4,Trinity_GG_5905_c0_g1_i7,blat.proc3829875.chain_3120,blat.proc3829875.chain_3121,blat.proc3829875.chain_3124	8
scaffold_28	alt_acceptor	7254671	7254672	+	asmbl_38350,asmbl_38351	none	STRG.29771.1,STRG.29771.2,Trinity_GG_16499_c0_g1_i1,Trinity_GG_16499_c0_g1_i3,blat.proc3829885.chain_2878,blat.proc3829885.chain_2880	6	STRG.29771.3,STRG.29771.4	2
scaffold_18	retained_intron	5606473	5606848	+	asmbl_20626	none	Trinity_GG_11735_c0_g1_i2,blat.proc3829881.chain_2225	2	STRG.21306.1,blat.proc3829881.chain_2224	2
scaffold_21	retained_intron	1151006	1151179	+	asmbl_28351	none	STRG.23774.1,blat.proc3829883.chain_939	2	STRG.23774.3	1
scaffold_9	starts_in_intron	6921103	6921103	-	asmbl_55068	none	blat.proc3829891.chain_3349	1	STRG.11195.2,blat.proc3829891.chain_3351,blat.proc3829891.chain_3352	3
scaffold_614	ends_in_intron	4202	4202	+	asmbl_49407	none	blat.proc3829885.chain_3396	1	STRG.30379.1,blat.proc3829885.chain_3397,blat.proc3829885.chain_3398	3
scaffold_1	alt_acceptor	4615282	4615283	+	asmbl_1682,asmbl_1684	none	STRG.295.1,STRG.295.2,blat.proc3829871.chain_329	3	STRG.295.3,STRG.295.4	2
scaffold_7	alt_acceptor	8175491	8175492	+	asmbl_50844,asmbl_50845	none	STRG.9039.1,STRG.9039.2,blat.proc3829875.chain_1470,blat.proc3829875.chain_1471	4	STRG.9039.3,Trinity_GG_5002_c0_g2_i2,blat.proc3829875.chain_1469	3
scaffold_9	alt_donor	571057	571058	+	asmbl_53750,asmbl_53753	none	STRG.10779.3,blat.proc3829875.chain_3224	2	STRG.10779.1,STRG.10779.2	2
scaffold_2	alt_acceptor	16079560	16079561	-	asmbl_23679	none	STRG.2557.2,blat.proc3829887.chain_2393	2	STRG.2557.1,STRG.2557.3	2
scaffold_1	alternate_exon	14364086	14365238	-	asmbl_909	none	STRG.1033.2,blat.proc3829887.chain_884	2	STRG.1033.1,blat.proc3829887.chain_885,blat.proc3829887.chain_887	3
scaffold_4	ends_in_intron	5506980	5506980	+	asmbl_42687	none	blat.proc3829873.chain_674	1	STRG.4453.1,blat.proc3829873.chain_675	2
scaffold_10	retained_exon	5857534	5857609	-	asmbl_3319	none	blat.proc3829893.chain_873	1	STRG.12401.1,STRG.12401.2,STRG.12401.3,blat.proc3829893.chain_872	4
scaffold_13	alt_acceptor	3734553	3734554	+	asmbl_10713,asmbl_10714,asmbl_10716,asmbl_10717	none	STRG.15686.1,STRG.15686.2,blat.proc3829879.chain_389,blat.proc3829879.chain_393,blat.proc3829879.chain_394	5	Trinity_GG_8631_c0_g1_i4,Trinity_GG_8631_c0_g1_i6,blat.proc3829879.chain_395,blat.proc3829879.chain_396	4
scaffold_11	retained_exon	2099402	2099454	-	asmbl_6450,asmbl_6451,asmbl_6452	none	STRG.13364.1,STRG.13364.2,STRG.13364.3,blat.proc3829893.chain_1825,blat.proc3829893.chain_1826,blat.proc3829893.chain_1827	6	blat.proc3829893.chain_1824	1
scaffold_22	ends_in_intron	10773214	10773214	-	asmbl_30395	none	Trinity_GG_31224_c0_g1_i3	1	STRG.25399.1	1
scaffold_5	retained_exon	11993058	11993127	-	asmbl_45811	none	STRG.6447.4,blat.proc3829889.chain_2519	2	STRG.6447.1,blat.proc3829889.chain_2521	2
scaffold_3	alt_acceptor	16072122	16072123	+	asmbl_40567	none	STRG.3888.1,blat.proc3829873.chain_286	2	STRG.3888.2,blat.proc3829873.chain_287	2
scaffold_15	ends_in_intron	12749712	12749712	+	asmbl_14542	none	blat.proc3829879.chain_3354	1	STRG.18731.1,STRG.18731.2,STRG.18731.3,STRG.18731.4,STRG.18731.6,blat.proc3829879.chain_3350,blat.proc3829879.chain_3351,blat.proc3829879.chain_3352,blat.proc3829879.chain_3353	9
scaffold_2	retained_intron	899038	899115	+	asmbl_24164,asmbl_24168,asmbl_24169	none	Trinity_GG_900_c0_g1_i3,Trinity_GG_900_c0_g1_i5,Trinity_GG_900_c0_g1_i6,blat.proc3829871.chain_1640,blat.proc3829871.chain_1643	5	STRG.1568.1,STRG.1568.2,Trinity_GG_900_c0_g1_i4,blat.proc3829871.chain_1642,blat.proc3829871.chain_1644	5
scaffold_27	retained_intron	3297546	3297880	-	asmbl_36858	none	STRG.28789.1,Trinity_GG_33120_c1_g1_i1,blat.proc3829901.chain_1964	3	STRG.28789.2	1
scaffold_12	alternate_exon	4215000	4215057	+	asmbl_8549	none	STRG.14588.4,blat.proc3829877.chain_3116	2	STRG.14588.2,STRG.14588.3	2
scaffold_16	starts_in_intron	8505691	8505691	-	asmbl_16425	none	blat.proc3829897.chain_457	1	STRG.19466.1,blat.proc3829897.chain_455,blat.proc3829897.chain_456	3
scaffold_10	starts_in_intron	5488642	5488642	+	asmbl_4452	none	STRG.12371.2,blat.proc3829877.chain_981	2	STRG.12371.1,blat.proc3829877.chain_980	2
scaffold_22	alt_donor	6123502	6123503	+	asmbl_29389,asmbl_29400	none	STRG.24955.1,blat.proc3829883.chain_1996	2	STRG.24955.2,blat.proc3829883.chain_2002	2
scaffold_12	alternate_exon	6530063	6530108	+	asmbl_8656	none	STRG.14736.1,Trinity_GG_8132_c0_g1_i1,blat.proc3829877.chain_3211	3	STRG.14736.2	1
scaffold_28	spliced_intron	4194207	4194306	-	asmbl_37521	none	STRG.29591.2,blat.proc3829901.chain_2718	2	blat.proc3829901.chain_2719	1
scaffold_21	skipped_exon	5774264	5776476	-	asmbl_27723	none	STRG.24099.3	1	STRG.24099.2,blat.proc3829899.chain_1199	2
scaffold_5	ends_in_intron	16666270	16666270	+	asmbl_44782	none	blat.proc3829873.chain_2959	1	STRG.6858.1,blat.proc3829873.chain_2960	2
scaffold_25	spliced_intron	1440431	1440581	+	asmbl_33369,asmbl_33370	none	STRG.27161.2,blat.proc3829885.chain_228	2	STRG.27161.3,STRG.27161.4,Trinity_GG_14981_c0_g1_i1,blat.proc3829885.chain_226,blat.proc3829885.chain_227	5
scaffold_3	retained_intron	1268754	1268964	-	asmbl_38658	none	STRG.2955.3,Trinity_GG_18635_c0_g1_i3,blat.proc3829887.chain_2759	3	STRG.2955.1	1
scaffold_11	alt_acceptor	6073278	6073279	+	asmbl_5569,asmbl_5571	none	STRG.13658.1,STRG.13658.2,blat.proc3829877.chain_2095	3	STRG.13658.3	1
scaffold_2	retained_intron	7469630	7469727	-	asmbl_23288	none	blat.proc3829887.chain_1898	1	STRG.2075.2,STRG.2075.3,STRG.2075.4,Trinity_GG_18127_c0_g1_i18,blat.proc3829887.chain_1892,blat.proc3829887.chain_1893	6
scaffold_2	alt_acceptor	4243577	4243578	-	asmbl_23081	none	STRG.1859.1,blat.proc3829887.chain_1733	2	STRG.1859.2,STRG.1859.3,blat.proc3829887.chain_1734	3
scaffold_21	starts_in_intron	3155852	3155852	+	asmbl_28494	none	STRG.23945.4	1	STRG.23945.1,blat.proc3829883.chain_1052,blat.proc3829883.chain_1053,blat.proc3829883.chain_1056	4
scaffold_13	alternate_exon	11258802	11258871	+	asmbl_11244	none	STRG.16278.2,blat.proc3829879.chain_992	2	STRG.16278.1	1
scaffold_21	alt_acceptor	4781454	4781455	+	asmbl_28554	none	STRG.24011.1,Trinity_GG_13309_c0_g1_i1,blat.proc3829883.chain_1168	3	STRG.24011.2	1
scaffold_19	alt_acceptor	1498490	1498491	+	asmbl_22045,asmbl_22046	none	STRG.21905.2,STRG.21905.4,blat.proc3829881.chain_2927	3	STRG.21905.1,blat.proc3829881.chain_2929	2
scaffold_2	starts_in_intron	4179015	4179015	+	asmbl_24364	none	blat.proc3829871.chain_1928	1	STRG.1856.1,blat.proc3829871.chain_1926,blat.proc3829871.chain_1927	3
scaffold_24	ends_in_intron	6083671	6083671	-	asmbl_32914	none	STRG.26654.3,blat.proc3829899.chain_3666	2	STRG.26654.2	1
scaffold_11	retained_intron	17084164	17084320	-	asmbl_7224,asmbl_7225,asmbl_7226,asmbl_7227	none	STRG.14362.1,STRG.14362.2,STRG.14362.3,STRG.14362.4,blat.proc3829893.chain_2767,blat.proc3829893.chain_2771,blat.proc3829893.chain_2772	7	STRG.14362.5,blat.proc3829893.chain_2768	2
scaffold_17	starts_in_intron	14647374	14647374	-	asmbl_19492	none	Trinity_GG_28726_c0_g1_i2	1	STRG.20926.1,blat.proc3829897.chain_1775	2
scaffold_2	alt_donor	7894006	7894007	+	asmbl_24625,asmbl_24626,asmbl_24628	none	STRG.2086.1,STRG.2086.2,blat.proc3829871.chain_2191,blat.proc3829871.chain_2193,blat.proc3829871.chain_2194,blat.proc3829871.chain_2196,blat.proc3829871.chain_2199	7	STRG.2086.3,blat.proc3829871.chain_2189,blat.proc3829871.chain_2195	3
scaffold_9	spliced_intron	16738714	16738866	-	asmbl_55583,asmbl_55584,asmbl_55587	none	STRG.11811.1,STRG.11811.2,STRG.11811.3,Trinity_GG_23557_c0_g1_i2,Trinity_GG_23557_c0_g1_i6,blat.proc3829893.chain_219,blat.proc3829893.chain_220	7	Trinity_GG_23557_c0_g1_i4,blat.proc3829893.chain_222	2
scaffold_11	alt_acceptor	6019008	6019009	+	asmbl_5563	none	STRG.13657.2,blat.proc3829877.chain_2113	2	STRG.13657.1,STRG.13657.3,blat.proc3829877.chain_2112	3
scaffold_28	alt_donor	3318136	3318137	+	asmbl_38164	none	STRG.29526.1,blat.proc3829885.chain_2656	2	STRG.29526.2,blat.proc3829885.chain_2657	2
scaffold_13	spliced_intron	4457659	4457733	+	asmbl_10773,asmbl_10774,asmbl_10775,asmbl_10776,asmbl_10778,asmbl_10779,asmbl_10780	none	STRG.15755.1,STRG.15755.2,STRG.15755.4,Trinity_GG_8663_c0_g1_i6,Trinity_GG_8663_c0_g1_i7,Trinity_GG_8663_c0_g2_i2,blat.proc3829879.chain_448,blat.proc3829879.chain_449,blat.proc3829879.chain_451,blat.proc3829879.chain_452,blat.proc3829879.chain_453,blat.proc3829879.chain_455	12	STRG.15755.3,Trinity_GG_8663_c0_g2_i1,blat.proc3829879.chain_454	3
scaffold_13	skipped_exon	8809211	8810964	-	asmbl_9945	none	blat.proc3829895.chain_943	1	Trinity_GG_26094_c0_g1_i10,blat.proc3829895.chain_937,blat.proc3829895.chain_940,blat.proc3829895.chain_941	4
scaffold_2	starts_in_intron	5971837	5971837	-	asmbl_23191	none	STRG.1975.2,blat.proc3829887.chain_1871	2	STRG.1975.1,blat.proc3829887.chain_1870	2
scaffold_13	spliced_intron	4656102	4656354	+	asmbl_10800,asmbl_10802	none	STRG.15788.2,STRG.15788.3,blat.proc3829879.chain_487	3	STRG.15788.1,blat.proc3829879.chain_486	2
scaffold_16	alt_donor	14777160	14777161	-	asmbl_16682	none	STRG.19860.1,Trinity_GG_28125_c0_g1_i2,blat.proc3829897.chain_761	3	STRG.19860.2,Trinity_GG_28125_c0_g1_i1,blat.proc3829897.chain_762	3
scaffold_10	spliced_intron	5006392	5006680	-	asmbl_3247,asmbl_3248	none	STRG.12316.1,STRG.12316.2,blat.proc3829893.chain_756	3	Trinity_GG_23874_c0_g1_i2,Trinity_GG_23874_c0_g2_i1,blat.proc3829893.chain_753,blat.proc3829893.chain_755,blat.proc3829893.chain_757	5
scaffold_21	alternate_exon	3125921	3126795	-	asmbl_27539,asmbl_27540,asmbl_27543	none	STRG.23930.4,STRG.23930.5,Trinity_GG_30335_c0_g1_i6,blat.proc3829899.chain_977,blat.proc3829899.chain_979,blat.proc3829899.chain_981	6	STRG.23930.1,blat.proc3829899.chain_980	2
scaffold_5	starts_in_intron	14568037	14568037	-	asmbl_45981	none	blat.proc3829889.chain_2697	1	STRG.6648.1,STRG.6648.2,blat.proc3829889.chain_2695,blat.proc3829889.chain_2696,blat.proc3829889.chain_2698	5
scaffold_14	starts_in_intron	1131481	1131481	-	asmbl_12843	none	Trinity_GG_26404_c0_g1_i1,blat.proc3829895.chain_1474	2	STRG.16759.1,STRG.16759.2,Trinity_GG_26404_c0_g1_i2,Trinity_GG_26404_c0_g1_i3,blat.proc3829895.chain_1475,blat.proc3829895.chain_1476	6
scaffold_1	alt_acceptor	12334369	12334370	-	asmbl_716,asmbl_717	none	blat.proc3829887.chain_735,blat.proc3829887.chain_736	2	STRG.843.2,blat.proc3829887.chain_741,blat.proc3829887.chain_743	3
scaffold_10	spliced_intron	5687106	5687347	+	asmbl_4471,asmbl_4472	none	STRG.12387.1,STRG.12387.3,blat.proc3829877.chain_1043	3	STRG.12387.2,blat.proc3829877.chain_1042	2
scaffold_3	alt_acceptor	6656852	6656853	+	asmbl_40061,asmbl_40062,asmbl_40067,asmbl_40068,asmbl_40070	none	STRG.3290.4,blat.proc3829871.chain_3459,blat.proc3829871.chain_3460,blat.proc3829871.chain_3464,blat.proc3829871.chain_3466,blat.proc3829871.chain_3468,blat.proc3829871.chain_3469,blat.proc3829871.chain_3470	8	STRG.3290.1,STRG.3290.2,STRG.3290.3,STRG.3290.5,Trinity_GG_1861_c0_g1_i14,blat.proc3829871.chain_3465,blat.proc3829871.chain_3467	7
scaffold_1	spliced_intron	13537305	13537508	-	asmbl_825,asmbl_826,asmbl_828	none	STRG.966.1,Trinity_GG_17468_c0_g1_i1,Trinity_GG_17468_c0_g1_i5,blat.proc3829887.chain_771,blat.proc3829887.chain_773,blat.proc3829887.chain_774	6	blat.proc3829887.chain_772,blat.proc3829887.chain_775	2
scaffold_19	alt_acceptor	8734058	8734059	-	asmbl_21514	none	STRG.22309.1,blat.proc3829897.chain_3015	2	STRG.22309.2	1
scaffold_4	starts_in_intron	3381184	3381184	+	asmbl_42518	none	blat.proc3829873.chain_584	1	STRG.4269.1,STRG.4269.2,blat.proc3829873.chain_586,blat.proc3829873.chain_587	4
scaffold_11	retained_intron	15655831	15655930	-	asmbl_7178	none	blat.proc3829893.chain_2733	1	STRG.14297.1,STRG.14297.2,blat.proc3829893.chain_2729,blat.proc3829893.chain_2730,blat.proc3829893.chain_2731,blat.proc3829893.chain_2732,blat.proc3829893.chain_2736,blat.proc3829893.chain_2737	8
scaffold_9	retained_intron	14039157	14039465	+	asmbl_54499	none	Trinity_GG_6520_c0_g1_i2,blat.proc3829877.chain_435	2	STRG.11659.1,Trinity_GG_6520_c0_g1_i3,blat.proc3829877.chain_438	3
scaffold_1	alt_donor	13825493	13825494	-	asmbl_854	none	STRG.987.2,blat.proc3829887.chain_899	2	STRG.987.3,blat.proc3829887.chain_900	2
scaffold_9	starts_in_intron	12470672	12470672	+	asmbl_54421	none	blat.proc3829877.chain_344	1	blat.proc3829877.chain_343,blat.proc3829877.chain_345	2
scaffold_9	alt_acceptor	17791899	17791900	-	asmbl_55643,asmbl_55647	none	STRG.11857.2,Trinity_GG_23527_c0_g1_i1,blat.proc3829893.chain_162	3	STRG.11857.1,Trinity_GG_23527_c0_g1_i2,blat.proc3829893.chain_163	3
scaffold_14	alt_donor	15517209	15517210	-	asmbl_13710	none	STRG.17775.2	1	STRG.17775.3	1
scaffold_15	alternate_exon	14743839	14744192	-	asmbl_15760	none	STRG.18879.2,blat.proc3829895.chain_3658	2	STRG.18879.1,blat.proc3829895.chain_3657	2
scaffold_28	alt_acceptor	5239250	5239251	-	asmbl_37588,asmbl_37589	none	STRG.29652.1,STRG.29652.2,blat.proc3829901.chain_2680	3	blat.proc3829901.chain_2687	1
scaffold_9	ends_in_intron	16573391	16573391	-	asmbl_55553	none	Trinity_GG_23525_c0_g1_i2,blat.proc3829893.chain_158	2	STRG.11799.1,STRG.11799.2,Trinity_GG_23525_c0_g1_i1,blat.proc3829893.chain_159	4
scaffold_18	alt_acceptor	7172231	7172232	-	asmbl_19962	none	STRG.21405.2,Trinity_GG_28995_c0_g1_i5,blat.proc3829897.chain_2258	3	STRG.21405.1,STRG.21405.3,Trinity_GG_28995_c0_g1_i3,blat.proc3829897.chain_2259	4
scaffold_27	starts_in_intron	2796533	2796533	+	asmbl_36070	none	Trinity_GG_15912_c0_g1_i5,blat.proc3829885.chain_1812	2	STRG.28740.1,blat.proc3829885.chain_1811,blat.proc3829885.chain_1813	3
scaffold_8	alt_acceptor	9870747	9870748	+	asmbl_52100,asmbl_52101,asmbl_52104,asmbl_52105,asmbl_52107,asmbl_52109,asmbl_52110	none	STRG.10225.2,STRG.10225.4,blat.proc3829875.chain_2691,blat.proc3829875.chain_2692,blat.proc3829875.chain_2694,blat.proc3829875.chain_2696,blat.proc3829875.chain_2697	7	STRG.10225.5,STRG.10225.6,blat.proc3829875.chain_2693	3
scaffold_13	alt_acceptor	15672505	15672506	+	asmbl_11506	none	STRG.16598.3	1	STRG.16598.1,STRG.16598.2	2
scaffold_13	skipped_exon	2969960	2972943	+	asmbl_10628	none	STRG.15582.2,blat.proc3829879.chain_301	2	STRG.15582.1,blat.proc3829879.chain_300	2
scaffold_25	spliced_intron	4811129	4811361	+	asmbl_33528,asmbl_33529,asmbl_33530	none	STRG.27400.1,STRG.27400.2,Trinity_GG_15078_c0_g1_i1,Trinity_GG_15078_c0_g1_i5,Trinity_GG_15078_c0_g1_i6,blat.proc3829885.chain_375,blat.proc3829885.chain_376,blat.proc3829885.chain_377	8	Trinity_GG_15078_c0_g1_i7,blat.proc3829885.chain_378	2
scaffold_8	spliced_intron	11111045	11111142	+	asmbl_52185	none	STRG.10317.3,blat.proc3829875.chain_2831	2	STRG.10317.2,blat.proc3829875.chain_2834	2
scaffold_20	spliced_intron	5954529	5955148	-	asmbl_26720	none	STRG.23191.2,blat.proc3829899.chain_157	2	Trinity_GG_29917_c0_g1_i1,blat.proc3829899.chain_158	2
scaffold_8	retained_intron	12693248	12693352	+	asmbl_52323,asmbl_52324	none	blat.proc3829875.chain_2944,blat.proc3829875.chain_2947	2	STRG.10436.1,STRG.10436.2,blat.proc3829875.chain_2949	3
scaffold_9	alt_acceptor	4198648	4198649	+	asmbl_53919	none	blat.proc3829875.chain_3477	1	STRG.11011.1,STRG.11011.2,blat.proc3829875.chain_3476	3
scaffold_10	ends_in_intron	1628692	1628692	-	asmbl_2988	none	blat.proc3829893.chain_459	1	STRG.12019.1,STRG.12019.2,blat.proc3829893.chain_456,blat.proc3829893.chain_458	4
scaffold_2	starts_in_intron	13093955	13093955	+	asmbl_24853	none	STRG.2333.2,blat.proc3829871.chain_2443	2	STRG.2333.1,blat.proc3829871.chain_2442	2
scaffold_3	alt_donor	17345483	17345484	+	asmbl_40627,asmbl_40630	none	STRG.3962.1,blat.proc3829873.chain_361,blat.proc3829873.chain_364	3	STRG.3962.2	1
scaffold_6	starts_in_intron	8451276	8451276	+	asmbl_47060	none	Trinity_GG_4205_c0_g1_i1,blat.proc3829875.chain_33	2	STRG.7707.1,blat.proc3829875.chain_34	2
scaffold_4	alt_donor	18291791	18291792	+	asmbl_43434,asmbl_43436	none	STRG.5424.4,STRG.5424.5,blat.proc3829873.chain_1664,blat.proc3829873.chain_1666	4	STRG.5424.1,STRG.5424.2,STRG.5424.3,STRG.5424.6,blat.proc3829873.chain_1665	5
scaffold_5	retained_intron	18981494	18981592	+	asmbl_44950	none	Trinity_GG_3805_c0_g1_i2,blat.proc3829873.chain_3068	2	STRG.7005.1,Trinity_GG_3805_c0_g1_i1,blat.proc3829873.chain_3069	3
scaffold_14	retained_intron	15346342	15346877	-	asmbl_13695	none	STRG.17749.2,blat.proc3829895.chain_2512	2	STRG.17749.1,STRG.17749.3,blat.proc3829895.chain_2513,blat.proc3829895.chain_2514	4
scaffold_2	alternate_exon	7783101	7784953	+	asmbl_24606,asmbl_24608	none	STRG.2076.2,STRG.2076.5,Trinity_GG_1189_c0_g1_i3,blat.proc3829871.chain_2205,blat.proc3829871.chain_2211,blat.proc3829871.chain_2212	6	STRG.2076.4,STRG.2076.7,blat.proc3829871.chain_2202,blat.proc3829871.chain_2207,blat.proc3829871.chain_2213	5
scaffold_11	alt_acceptor	4730690	4730691	+	asmbl_5470	none	STRG.13549.2,blat.proc3829877.chain_1988	2	STRG.13549.1,blat.proc3829877.chain_1987	2
scaffold_9	alt_donor	16628032	16628033	-	asmbl_55557,asmbl_55559	none	STRG.11794.1,STRG.11794.2,blat.proc3829893.chain_174	3	STRG.11794.3,STRG.11794.4	2
scaffold_5	alternate_exon	4773600	4773944	-	asmbl_45399	none	STRG.5933.3	1	STRG.5933.2,blat.proc3829889.chain_2043	2
scaffold_10	alt_donor	11080089	11080090	+	asmbl_4722	none	STRG.12768.1,blat.proc3829877.chain_1328	2	STRG.12768.2,Trinity_GG_7034_c0_g1_i1,blat.proc3829877.chain_1327	3
scaffold_7	retained_intron	9312366	9312531	+	asmbl_50959	none	Trinity_GG_5081_c0_g1_i2,blat.proc3829875.chain_1612	2	STRG.9133.1,Trinity_GG_5081_c0_g1_i1,blat.proc3829875.chain_1610,blat.proc3829875.chain_1611	4
scaffold_23	retained_intron	6290838	6290991	-	asmbl_31688,asmbl_31689,asmbl_31690,asmbl_31691,asmbl_31694	none	STRG.25954.2,Trinity_GG_31552_c0_g1_i3,Trinity_GG_31552_c0_g1_i4,Trinity_GG_31552_c0_g1_i6,Trinity_GG_31552_c0_g1_i7,blat.proc3829899.chain_3102,blat.proc3829899.chain_3103,blat.proc3829899.chain_3105,blat.proc3829899.chain_3106	9	STRG.25954.1,Trinity_GG_31552_c0_g1_i2,Trinity_GG_31552_c0_g1_i5,blat.proc3829899.chain_3101,blat.proc3829899.chain_3104,blat.proc3829899.chain_3107	6
scaffold_3	ends_in_intron	1525755	1525755	+	asmbl_39812	none	blat.proc3829871.chain_3122	1	STRG.2975.1	1
scaffold_10	ends_in_intron	342051	342051	-	asmbl_2859	none	Trinity_GG_23606_c0_g1_i4,blat.proc3829893.chain_297	2	STRG.11910.1,blat.proc3829893.chain_298,blat.proc3829893.chain_299	3
scaffold_11	alternate_exon	7097925	7097956	+	asmbl_5625	none	STRG.13724.1,Trinity_GG_7524_c0_g1_i2,blat.proc3829877.chain_2147	3	STRG.13724.2,Trinity_GG_7524_c0_g1_i1,blat.proc3829877.chain_2148	3
scaffold_8	retained_intron	6321681	6321793	-	asmbl_52870	none	blat.proc3829891.chain_2198	1	STRG.10031.1	1
scaffold_14	alt_acceptor	7520634	7520635	+	asmbl_12150,asmbl_12151	none	STRG.17182.1,Trinity_GG_9453_c0_g1_i1,Trinity_GG_9453_c0_g1_i2,blat.proc3829879.chain_1913,blat.proc3829879.chain_1914	5	STRG.17182.2	1
scaffold_7	alt_donor	12421148	12421149	+	asmbl_51139	none	STRG.9335.1,blat.proc3829875.chain_1794	2	STRG.9335.2,blat.proc3829875.chain_1793	2
scaffold_1	retained_intron	14189225	14189671	-	asmbl_871	none	Trinity_GG_17568_c0_g1_i7,blat.proc3829887.chain_946	2	STRG.1005.1,blat.proc3829887.chain_944,blat.proc3829887.chain_945,blat.proc3829887.chain_947,blat.proc3829887.chain_948,blat.proc3829887.chain_949	6
scaffold_13	alternate_exon	7504556	7504749	-	asmbl_9843,asmbl_9849	none	STRG.16034.4,Trinity_GG_26030_c0_g1_i3,blat.proc3829895.chain_812	3	Trinity_GG_26030_c0_g1_i10,blat.proc3829895.chain_816	2
scaffold_8	alt_acceptor	7809915	7809916	+	asmbl_51984	none	STRG.10091.1,blat.proc3829875.chain_2620	2	STRG.10091.2	1
scaffold_12	alt_acceptor	5042712	5042713	-	asmbl_7604,asmbl_7607	none	STRG.14668.1,blat.proc3829893.chain_2957,blat.proc3829893.chain_2958	3	STRG.14668.2	1
scaffold_19	alt_acceptor	12957723	12957724	-	asmbl_21775,asmbl_21777	none	Trinity_GG_29572_c0_g1_i6,Trinity_GG_29572_c0_g1_i7,blat.proc3829897.chain_3292,blat.proc3829897.chain_3295	4	STRG.22600.1	1
scaffold_22	alt_donor	7417490	7417491	-	asmbl_30160,asmbl_30161	none	STRG.25062.2,blat.proc3829899.chain_2148	2	STRG.25062.1,blat.proc3829899.chain_2151	2
scaffold_8	spliced_intron	17498151	17498237	+	asmbl_52471,asmbl_52474,asmbl_52477,asmbl_52480	none	STRG.10668.1,STRG.10668.3,STRG.10668.5,blat.proc3829875.chain_3152,blat.proc3829875.chain_3153,blat.proc3829875.chain_3156	6	blat.proc3829875.chain_3157,blat.proc3829875.chain_3158	2
scaffold_4	retained_intron	6303061	6303375	+	asmbl_42722	none	Trinity_GG_2497_c1_g1_i1,blat.proc3829873.chain_872	2	STRG.4502.1,Trinity_GG_2497_c0_g1_i1,Trinity_GG_2497_c0_g1_i6,Trinity_GG_2497_c0_g1_i8,Trinity_GG_2497_c0_g1_i9,blat.proc3829873.chain_863,blat.proc3829873.chain_865,blat.proc3829873.chain_866,blat.proc3829873.chain_867,blat.proc3829873.chain_868,blat.proc3829873.chain_870,blat.proc3829873.chain_871	12
scaffold_7	retained_intron	11147047	11147136	+	asmbl_51031,asmbl_51033,asmbl_51034	none	STRG.9251.2,blat.proc3829875.chain_1727,blat.proc3829875.chain_1728,blat.proc3829875.chain_1730	4	STRG.9251.1,blat.proc3829875.chain_1725,blat.proc3829875.chain_1726,blat.proc3829875.chain_1729	4
scaffold_21	alt_acceptor	675560	675561	-	asmbl_27366,asmbl_27367,asmbl_27369	none	STRG.23740.3,blat.proc3829899.chain_806,blat.proc3829899.chain_807	3	STRG.23740.1,STRG.23740.2,STRG.23740.4,STRG.23740.5	4
scaffold_3	retained_intron	4282352	4282433	+	asmbl_39953	none	STRG.3120.1	1	STRG.3120.2	1
scaffold_8	alt_acceptor	18424570	18424571	+	asmbl_52544,asmbl_52545	none	STRG.10731.1,Trinity_GG_5948_c0_g1_i3,blat.proc3829875.chain_3212	3	STRG.10731.2,Trinity_GG_5948_c0_g1_i2,blat.proc3829875.chain_3213	3
scaffold_5	retained_intron	939420	939502	-	asmbl_45186	none	STRG.5635.1	1	STRG.5635.3	1
scaffold_50	alt_acceptor	26713	26714	-	asmbl_46439	none	STRG.30036.3	1	STRG.30036.2,blat.proc3829901.chain_3140	2
scaffold_6	alt_donor	8641582	8641583	+	asmbl_47106,asmbl_47107	none	STRG.7737.1,STRG.7737.3	2	STRG.7737.2,blat.proc3829875.chain_103,blat.proc3829875.chain_104,blat.proc3829875.chain_105	4
scaffold_9	retained_intron	9644933	9645015	+	asmbl_54201	none	STRG.11322.2	1	STRG.11322.1,Trinity_GG_6310_c0_g1_i1,blat.proc3829877.chain_81	3
scaffold_8	retained_intron	4083068	4083191	+	asmbl_51799	none	blat.proc3829875.chain_2410	1	STRG.9885.1,STRG.9885.2,blat.proc3829875.chain_2411,blat.proc3829875.chain_2413	4
scaffold_13	alt_donor	2376218	2376219	-	asmbl_9416	none	STRG.15538.1,blat.proc3829895.chain_296	2	STRG.15538.2,STRG.15538.3,STRG.15538.4,blat.proc3829895.chain_294,blat.proc3829895.chain_295	5
scaffold_14	starts_in_intron	15911111	15911111	-	asmbl_13742	none	STRG.17820.1,blat.proc3829895.chain_2508	2	STRG.17820.2,blat.proc3829895.chain_2505	2
scaffold_19	alt_acceptor	5137276	5137277	+	asmbl_22153	none	STRG.22067.1,blat.proc3829881.chain_2987	2	STRG.22067.2,blat.proc3829881.chain_2986	2
scaffold_10	starts_in_intron	1993634	1993634	-	asmbl_3008	none	blat.proc3829893.chain_503	1	STRG.12042.1,blat.proc3829893.chain_502	2
scaffold_13	alt_acceptor	8203458	8203459	-	asmbl_9910	none	blat.proc3829895.chain_878	1	blat.proc3829895.chain_879	1
scaffold_3	spliced_intron	10628351	10628697	+	asmbl_40238	none	STRG.3509.2,blat.proc3829871.chain_3605	2	blat.proc3829871.chain_3604,blat.proc3829871.chain_3606	2
scaffold_21	alternate_exon	7506485	7506770	-	asmbl_27849,asmbl_27852	none	STRG.24269.1,STRG.24269.2,blat.proc3829899.chain_1357	3	STRG.24269.3,blat.proc3829899.chain_1354	2
scaffold_14	alt_acceptor	3431447	3431448	-	asmbl_12993	none	STRG.16921.1,blat.proc3829895.chain_1652	2	STRG.16921.2	1
scaffold_14	alternate_exon	9999242	9999372	-	asmbl_13380	none	STRG.17356.2,Trinity_GG_26738_c0_g1_i1,blat.proc3829895.chain_2059	3	STRG.17356.1,blat.proc3829895.chain_2060,blat.proc3829895.chain_2061,blat.proc3829895.chain_2062,blat.proc3829895.chain_2063	5
scaffold_7	alt_acceptor	809120	809121	+	asmbl_50444	none	Trinity_GG_4707_c1_g1_i1,blat.proc3829875.chain_979	2	STRG.8613.1,Trinity_GG_4707_c1_g1_i3,blat.proc3829875.chain_977	3
scaffold_18	alt_donor	4705950	4705951	+	asmbl_20576	none	STRG.21248.1,blat.proc3829881.chain_2144	2	blat.proc3829881.chain_2143	1
scaffold_16	retained_intron	7910628	7911984	+	asmbl_17160	none	blat.proc3829881.chain_260	1	STRG.19432.1,Trinity_GG_10619_c0_g1_i2,blat.proc3829881.chain_261	3
scaffold_26	alt_donor	9033613	9033614	+	asmbl_35722	none	STRG.28451.1,Trinity_GG_15750_c0_g1_i2,blat.proc3829885.chain_1493	3	STRG.28451.2,Trinity_GG_15750_c0_g1_i1,blat.proc3829885.chain_1492	3
scaffold_15	alt_acceptor	1265028	1265029	+	asmbl_13936,asmbl_13937	none	blat.proc3829879.chain_2600,blat.proc3829879.chain_2602	2	STRG.17926.1	1
scaffold_16	alt_donor	4911936	4911937	-	asmbl_16254	none	STRG.19258.1,Trinity_GG_27837_c0_g1_i3,blat.proc3829897.chain_313	3	STRG.19258.2	1
scaffold_24	spliced_intron	5244901	5245095	-	asmbl_32871	none	STRG.26595.1,blat.proc3829899.chain_3664	2	STRG.26595.2	1
scaffold_27	alt_acceptor	5927478	5927479	-	asmbl_37001	none	blat.proc3829901.chain_2166	1	STRG.28980.1	1
scaffold_10	alt_donor	4058814	4058815	-	asmbl_3169,asmbl_3170	none	STRG.12237.2,STRG.12237.3,blat.proc3829893.chain_710	3	STRG.12237.1,STRG.12237.4,blat.proc3829893.chain_706,blat.proc3829893.chain_709	4
scaffold_5	retained_intron	15528913	15529261	-	asmbl_46073	none	STRG.6733.1,Trinity_GG_20799_c0_g1_i2,blat.proc3829889.chain_2806	3	blat.proc3829889.chain_2805	1
scaffold_27	alt_donor	2814303	2814304	+	asmbl_36074,asmbl_36075,asmbl_36079,asmbl_36080	none	STRG.28742.1,STRG.28742.2,blat.proc3829885.chain_1799,blat.proc3829885.chain_1801,blat.proc3829885.chain_1802,blat.proc3829885.chain_1803	6	STRG.28742.3,STRG.28742.4	2
scaffold_16	alternate_exon	8589188	8589913	+	asmbl_17210,asmbl_17215	none	STRG.19477.2,blat.proc3829881.chain_355,blat.proc3829881.chain_357	3	STRG.19477.5	1
scaffold_7	ends_in_intron	728904	728904	-	asmbl_49512	none	Trinity_GG_21937_c0_g1_i1,blat.proc3829891.chain_974	2	STRG.8601.1,blat.proc3829891.chain_975	2
scaffold_28	alternate_exon	5577305	5577492	+	asmbl_38290,asmbl_38293	none	STRG.29670.3,Trinity_GG_16454_c0_g1_i4,blat.proc3829885.chain_2793	3	STRG.29670.1,STRG.29670.2,Trinity_GG_16454_c0_g1_i2,Trinity_GG_16454_c0_g1_i5,Trinity_GG_16454_c0_g1_i6,blat.proc3829885.chain_2794,blat.proc3829885.chain_2796,blat.proc3829885.chain_2797	8
scaffold_12	alt_acceptor	14284130	14284131	+	asmbl_9056	none	blat.proc3829877.chain_3709	1	STRG.15247.1,blat.proc3829877.chain_3710	2
scaffold_1	starts_in_intron	6128954	6128954	-	asmbl_322	none	STRG.412.1,blat.proc3829887.chain_296	2	STRG.412.2,blat.proc3829887.chain_297	2
scaffold_1	alt_acceptor	3681276	3681277	+	asmbl_1626	none	STRG.237.3	1	blat.proc3829871.chain_292	1
scaffold_17	retained_intron	2684608	2684736	+	asmbl_17813	none	blat.proc3829881.chain_881	1	STRG.20051.1,STRG.20051.2,blat.proc3829881.chain_882,blat.proc3829881.chain_883,blat.proc3829881.chain_884	5
scaffold_8	alternate_exon	17682599	17682810	-	asmbl_53491	none	STRG.10682.2,Trinity_GG_22921_c0_g1_i1,blat.proc3829891.chain_2785	3	STRG.10682.1,Trinity_GG_22921_c0_g1_i6,blat.proc3829891.chain_2786	3
scaffold_15	spliced_intron	12422231	12422360	+	asmbl_14505	none	blat.proc3829879.chain_3270	1	STRG.18687.1,blat.proc3829879.chain_3268,blat.proc3829879.chain_3271,blat.proc3829879.chain_3272,blat.proc3829879.chain_3273	5
scaffold_20	alt_donor	11566279	11566280	+	asmbl_26230	none	blat.proc3829883.chain_792	1	STRG.23649.1,STRG.23649.2,blat.proc3829883.chain_793	3
scaffold_16	alt_acceptor	4046856	4046857	-	asmbl_16216	none	STRG.19208.1	1	STRG.19208.2	1
scaffold_9	skipped_exon	17659157	17660769	-	asmbl_55632	none	STRG.11840.1,Trinity_GG_23537_c0_g1_i3,blat.proc3829893.chain_175	3	STRG.11840.2,STRG.11840.3,Trinity_GG_23537_c0_g1_i1,Trinity_GG_23537_c0_g1_i4,blat.proc3829893.chain_176,blat.proc3829893.chain_177	6
scaffold_21	alternate_exon	416090	416134	-	asmbl_27347	none	STRG.23721.2,Trinity_GG_30222_c0_g1_i1,blat.proc3829899.chain_751	3	STRG.23721.1,Trinity_GG_30222_c0_g1_i2,blat.proc3829899.chain_750	3
scaffold_18	alternate_exon	7866282	7866927	-	asmbl_20021	none	blat.proc3829897.chain_2330	1	blat.proc3829897.chain_2329	1
scaffold_5	spliced_intron	1548524	1548586	-	asmbl_45248	none	STRG.5706.1,blat.proc3829889.chain_1819,blat.proc3829889.chain_1821	3	Trinity_GG_20236_c0_g1_i4,blat.proc3829889.chain_1822	2
scaffold_15	starts_in_intron	5319728	5319728	-	asmbl_15205	none	blat.proc3829895.chain_2928	1	STRG.18211.1,STRG.18211.2,Trinity_GG_27242_c0_g1_i2,blat.proc3829895.chain_2925,blat.proc3829895.chain_2926,blat.proc3829895.chain_2927,blat.proc3829895.chain_2929	7
scaffold_7	alternate_exon	17610793	17613091	+	asmbl_51370	none	STRG.9601.2	1	Trinity_GG_5301_c0_g1_i2	1
scaffold_25	spliced_intron	3712653	3712743	-	asmbl_34132	none	STRG.27305.1,blat.proc3829901.chain_609	2	blat.proc3829901.chain_608	1
scaffold_16	alt_acceptor	7546996	7546997	+	asmbl_17147	none	STRG.19394.1,blat.proc3829881.chain_238	2	STRG.19394.2	1
scaffold_24	spliced_intron	8711438	8711587	-	asmbl_33078	none	STRG.26857.1,blat.proc3829901.chain_152	2	STRG.26857.2	1
scaffold_14	starts_in_intron	14063528	14063528	-	asmbl_13656	none	blat.proc3829895.chain_2410	1	STRG.17659.1,blat.proc3829895.chain_2409	2
scaffold_5	ends_in_intron	12732087	12732087	-	asmbl_45859	none	Trinity_GG_20653_c0_g1_i3,blat.proc3829889.chain_2553	2	STRG.6497.1,STRG.6497.3	2
scaffold_13	alternate_exon	11378132	11378589	-	asmbl_10046	none	STRG.16287.6,Trinity_GG_26140_c0_g1_i2,blat.proc3829895.chain_1027	3	STRG.16287.1,STRG.16287.2,STRG.16287.3,STRG.16287.4,Trinity_GG_26140_c0_g1_i1,Trinity_GG_26140_c0_g1_i11,Trinity_GG_26140_c0_g1_i3,Trinity_GG_26140_c0_g1_i4,Trinity_GG_26140_c0_g1_i5,Trinity_GG_26140_c0_g1_i8,blat.proc3829895.chain_1024,blat.proc3829895.chain_1026,blat.proc3829895.chain_1028,blat.proc3829895.chain_1032,blat.proc3829895.chain_1033,blat.proc3829895.chain_1034	16
scaffold_9	alt_donor	4849349	4849350	+	asmbl_53944	none	Trinity_GG_6147_c0_g1_i2,blat.proc3829875.chain_3509	2	STRG.11050.1,blat.proc3829875.chain_3510	2
scaffold_23	retained_intron	10977476	10977635	+	asmbl_31185,asmbl_31187,asmbl_31192,asmbl_31193	none	STRG.26281.2,Trinity_GG_14524_c0_g1_i12,Trinity_GG_14524_c0_g1_i9,blat.proc3829883.chain_3192,blat.proc3829883.chain_3197,blat.proc3829883.chain_3201	6	STRG.26281.1,Trinity_GG_14524_c0_g1_i13,Trinity_GG_14524_c0_g1_i8,blat.proc3829883.chain_3193,blat.proc3829883.chain_3194,blat.proc3829883.chain_3195,blat.proc3829883.chain_3199,blat.proc3829883.chain_3200,blat.proc3829883.chain_3203	9
scaffold_2	starts_in_intron	20316096	20316096	+	asmbl_25359	none	blat.proc3829871.chain_3028	1	STRG.2876.1,blat.proc3829871.chain_3027	2
scaffold_25	ends_in_intron	4578082	4578082	+	asmbl_33520,asmbl_33521	none	Trinity_GG_15111_c0_g1_i12,Trinity_GG_15111_c0_g1_i3,blat.proc3829885.chain_438,blat.proc3829885.chain_440	4	STRG.27377.1,STRG.27377.2,STRG.27377.3,Trinity_GG_15111_c0_g1_i4,Trinity_GG_15111_c0_g1_i5,Trinity_GG_15111_c0_g1_i9,blat.proc3829885.chain_437,blat.proc3829885.chain_439,blat.proc3829885.chain_441	9
scaffold_9	starts_in_intron	12155734	12155734	-	asmbl_55322	none	blat.proc3829891.chain_3649	1	STRG.11523.1,blat.proc3829891.chain_3650	2
scaffold_14	starts_in_intron	5627612	5627612	+	asmbl_12013	none	blat.proc3829879.chain_1764	1	STRG.17028.2,blat.proc3829879.chain_1765	2
scaffold_11	alt_acceptor	8331390	8331391	+	asmbl_5715	none	STRG.13833.1,Trinity_GG_7590_c0_g1_i1,blat.proc3829877.chain_2259	3	Trinity_GG_7590_c0_g1_i2,blat.proc3829877.chain_2258	2
scaffold_4	spliced_intron	17568123	17568235	-	asmbl_42034,asmbl_42039	none	STRG.5346.3,STRG.5346.4	2	blat.proc3829889.chain_1334	1
scaffold_22	retained_exon	9157570	9157645	-	asmbl_30283,asmbl_30284	none	STRG.25232.1,blat.proc3829899.chain_2273	2	STRG.25232.2,Trinity_GG_31086_c0_g1_i2,blat.proc3829899.chain_2274	3
scaffold_9	skipped_exon	644688	645850	+	asmbl_53764	none	STRG.10785.3	1	STRG.10785.1,STRG.10785.2,STRG.10785.4,blat.proc3829875.chain_3238	4
scaffold_21	alt_donor	257644	257645	-	asmbl_27314,asmbl_27316,asmbl_27319,asmbl_27320	none	STRG.23718.2,STRG.23718.4,STRG.23718.5,STRG.23718.8,blat.proc3829899.chain_781,blat.proc3829899.chain_787,blat.proc3829899.chain_788	7	STRG.23718.3,STRG.23718.6,blat.proc3829899.chain_782,blat.proc3829899.chain_785,blat.proc3829899.chain_786	5
scaffold_10	alt_donor	16997906	16997907	-	asmbl_3922	none	STRG.13131.2,Trinity_GG_24371_c0_g1_i2,blat.proc3829893.chain_1627	3	STRG.13131.1,Trinity_GG_24371_c0_g1_i1,blat.proc3829893.chain_1626	3
scaffold_28	ends_in_intron	7357368	7357368	+	asmbl_38361	none	blat.proc3829885.chain_2871	1	STRG.29785.1,blat.proc3829885.chain_2874	2
scaffold_27	retained_exon	3866108	3866210	+	asmbl_36187	none	STRG.28827.2	1	blat.proc3829885.chain_1969	1
scaffold_20	alt_acceptor	1469911	1469912	-	asmbl_26503,asmbl_26509	none	STRG.22854.2,blat.proc3829897.chain_3660,blat.proc3829897.chain_3661	3	STRG.22854.1,blat.proc3829897.chain_3657	2
scaffold_24	alternate_exon	9084646	9084820	+	asmbl_32504,asmbl_32506,asmbl_32507	none	STRG.26930.1,STRG.26930.2,blat.proc3829885.chain_81,blat.proc3829885.chain_84	4	STRG.26930.3	1
scaffold_8	alt_acceptor	9872527	9872528	-	asmbl_53055	none	STRG.10226.1,blat.proc3829891.chain_2378	2	STRG.10226.2	1
scaffold_14	retained_intron	3159934	3160025	+	asmbl_11895,asmbl_11896	none	blat.proc3829879.chain_1632,blat.proc3829879.chain_1635	2	STRG.16893.1,STRG.16893.2,STRG.16893.3,Trinity_GG_9302_c0_g1_i11,blat.proc3829879.chain_1625,blat.proc3829879.chain_1626,blat.proc3829879.chain_1627,blat.proc3829879.chain_1629,blat.proc3829879.chain_1630,blat.proc3829879.chain_1631,blat.proc3829879.chain_1633,blat.proc3829879.chain_1636,blat.proc3829879.chain_1638,blat.proc3829879.chain_1639,blat.proc3829879.chain_1640	15
scaffold_6	alternate_exon	2480245	2481853	-	asmbl_48074	none	STRG.7236.4,Trinity_GG_21054_c0_g1_i10,blat.proc3829889.chain_3218,blat.proc3829889.chain_3221	4	STRG.7236.3	1
scaffold_2	retained_intron	18591305	18591383	-	asmbl_23815	none	STRG.2731.2,blat.proc3829887.chain_2557	2	STRG.2731.1,blat.proc3829887.chain_2558	2
scaffold_12	alt_donor	14881135	14881136	-	asmbl_8141	none	STRG.15256.1,blat.proc3829893.chain_3636	2	blat.proc3829893.chain_3637	1
scaffold_8	retained_intron	13132405	13133848	-	asmbl_53271,asmbl_53272	none	STRG.10481.2,blat.proc3829891.chain_2640,blat.proc3829891.chain_2641	3	STRG.10481.1	1
scaffold_9	starts_in_intron	7607843	7607843	-	asmbl_55071	none	blat.proc3829891.chain_3354	1	STRG.11208.1,blat.proc3829891.chain_3355	2
scaffold_10	alt_acceptor	10809892	10809893	+	asmbl_4717	none	STRG.12757.1,Trinity_GG_7031_c0_g1_i1,blat.proc3829877.chain_1312	3	Trinity_GG_7031_c0_g1_i2,blat.proc3829877.chain_1311	2
scaffold_1	skipped_exon	4567214	4568661	-	asmbl_201,asmbl_204	none	STRG.277.1,STRG.277.2,blat.proc3829887.chain_136	3	STRG.277.4,blat.proc3829887.chain_133,blat.proc3829887.chain_138	3
scaffold_23	spliced_intron	7281701	7281808	-	asmbl_31744	none	STRG.26034.2	1	STRG.26034.1,blat.proc3829899.chain_3127	2
scaffold_21	ends_in_intron	6953939	6953939	-	asmbl_27789	none	Trinity_GG_30467_c0_g1_i1,blat.proc3829899.chain_1217	2	STRG.24208.1,blat.proc3829899.chain_1219	2
scaffold_26	alt_acceptor	7544927	7544928	+	asmbl_35652	none	STRG.28370.1	1	Trinity_GG_15687_c0_g1_i2,blat.proc3829885.chain_1384	2
scaffold_25	alt_acceptor	7318063	7318064	-	asmbl_34366	none	Trinity_GG_32461_c0_g1_i3,blat.proc3829901.chain_882	2	STRG.27557.1	1
scaffold_11	ends_in_intron	6535914	6535914	-	asmbl_6696	none	blat.proc3829893.chain_2142	1	STRG.13688.1,STRG.13688.2,blat.proc3829893.chain_2140,blat.proc3829893.chain_2141	4
scaffold_16	retained_exon	3706583	3707061	+	asmbl_16936,asmbl_16939	none	STRG.19166.1,blat.proc3829881.chain_35,blat.proc3829881.chain_36	3	STRG.19166.2	1
scaffold_26	spliced_intron	2264373	2264869	+	asmbl_35273	none	STRG.27941.2,blat.proc3829885.chain_921	2	STRG.27941.1,blat.proc3829885.chain_920	2
scaffold_25	ends_in_intron	9448613	9448613	+	asmbl_33810	none	blat.proc3829885.chain_733	1	STRG.27744.1,blat.proc3829885.chain_732,blat.proc3829885.chain_734	3
scaffold_17	alt_acceptor	8158326	8158327	+	asmbl_18070	none	STRG.20421.2	1	STRG.20421.1,blat.proc3829881.chain_1184,blat.proc3829881.chain_1185	3
scaffold_26	spliced_intron	902566	902678	+	asmbl_35238,asmbl_35239,asmbl_35240	none	STRG.27880.1,STRG.27880.2,Trinity_GG_15392_c0_g1_i1,blat.proc3829885.chain_886,blat.proc3829885.chain_888	5	Trinity_GG_15392_c0_g1_i2,blat.proc3829885.chain_889	2
scaffold_14	retained_exon	7295261	7295362	+	asmbl_12125	none	STRG.17153.2,blat.proc3829879.chain_1853	2	STRG.17153.1,blat.proc3829879.chain_1852,blat.proc3829879.chain_1855	3
scaffold_4	alternate_exon	16650275	16661305	+	asmbl_43330	none	STRG.5252.2	1	Trinity_GG_2887_c0_g1_i1,blat.proc3829873.chain_1486	2
scaffold_14	starts_in_intron	6909020	6909020	+	asmbl_12089	none	STRG.17115.3,Trinity_GG_9436_c0_g1_i2,blat.proc3829879.chain_1880	3	STRG.17115.1,STRG.17115.2,blat.proc3829879.chain_1881,blat.proc3829879.chain_1882,blat.proc3829879.chain_1883	5
scaffold_25	retained_exon	8707290	8707409	+	asmbl_33750	none	STRG.27679.3,blat.proc3829885.chain_698	2	STRG.27679.1,Trinity_GG_15273_c0_g1_i6,blat.proc3829885.chain_700,blat.proc3829885.chain_701	4
scaffold_3	ends_in_intron	14012153	14012153	+	asmbl_40449	none	blat.proc3829873.chain_96	1	STRG.3747.1,Trinity_GG_2072_c0_g1_i3,Trinity_GG_2072_c0_g1_i4,blat.proc3829873.chain_94,blat.proc3829873.chain_98	5
scaffold_25	alt_acceptor	4441860	4441861	+	asmbl_33497	none	STRG.27356.1	1	STRG.27356.2,Trinity_GG_15095_c0_g1_i3,blat.proc3829885.chain_404	3
scaffold_27	alt_acceptor	3019961	3019962	+	asmbl_36125	none	STRG.28769.2	1	STRG.28769.1,blat.proc3829885.chain_1774,blat.proc3829885.chain_1780,blat.proc3829885.chain_1782	4
scaffold_18	spliced_intron	4708153	4708225	+	asmbl_20578	none	STRG.21253.1,blat.proc3829881.chain_2135	2	Trinity_GG_11700_c0_g1_i1,blat.proc3829881.chain_2134	2
scaffold_17	spliced_intron	2740165	2740685	-	asmbl_18825	none	STRG.20064.1,blat.proc3829897.chain_1038	2	STRG.20064.2,Trinity_GG_28285_c1_g1_i1,blat.proc3829897.chain_1037	3
scaffold_12	alt_donor	12306310	12306311	+	asmbl_8949,asmbl_8950,asmbl_8951,asmbl_8952,asmbl_8953,asmbl_8955	none	STRG.15117.1,STRG.15117.2,STRG.15117.3,STRG.15117.4,STRG.15117.5,blat.proc3829877.chain_3594,blat.proc3829877.chain_3595,blat.proc3829877.chain_3596	8	STRG.15117.6	1
scaffold_16	retained_exon	1783081	1783324	+	asmbl_16875,asmbl_16876,asmbl_16877	none	STRG.19095.1,STRG.19095.3,STRG.19095.4,blat.proc3829879.chain_3708,blat.proc3829879.chain_3712,blat.proc3829879.chain_3713	6	blat.proc3829879.chain_3709	1
scaffold_3	alt_acceptor	8211839	8211840	-	asmbl_38980	none	STRG.3395.2,blat.proc3829887.chain_3166	2	STRG.3395.3	1
scaffold_15	retained_intron	12422231	12422360	+	asmbl_14501,asmbl_14504,asmbl_14506,asmbl_14507	none	STRG.18687.1,blat.proc3829879.chain_3268,blat.proc3829879.chain_3271,blat.proc3829879.chain_3272,blat.proc3829879.chain_3273	5	blat.proc3829879.chain_3270	1
scaffold_4	alt_donor	10954890	10954891	+	asmbl_43022	none	blat.proc3829873.chain_1192	1	STRG.4816.1,STRG.4816.2,blat.proc3829873.chain_1190,blat.proc3829873.chain_1191	4
scaffold_5	alternate_exon	4696210	4697372	+	asmbl_43948,asmbl_43949,asmbl_43950,asmbl_43951,asmbl_43952,asmbl_43954	none	STRG.5917.1,STRG.5917.2,STRG.5917.3,STRG.5917.4,blat.proc3829873.chain_2093,blat.proc3829873.chain_2094	6	STRG.5917.5	1
scaffold_3	spliced_intron	13988803	13989079	+	asmbl_40434,asmbl_40442	none	STRG.3741.1,STRG.3741.5,Trinity_GG_2070_c0_g1_i2,blat.proc3829873.chain_86	4	STRG.3741.2,Trinity_GG_2070_c0_g1_i4,blat.proc3829873.chain_87	3
scaffold_6	retained_intron	2487326	2487373	+	asmbl_46704,asmbl_46705	none	STRG.7239.1,STRG.7239.3	2	blat.proc3829873.chain_3414,blat.proc3829873.chain_3416,blat.proc3829873.chain_3417	3
scaffold_3	ends_in_intron	3750826	3750826	+	asmbl_39932	none	blat.proc3829871.chain_3264	1	STRG.3098.1,blat.proc3829871.chain_3262	2
scaffold_10	alt_acceptor	14700030	14700031	+	asmbl_4928,asmbl_4930,asmbl_4931	none	STRG.13011.1,blat.proc3829877.chain_1498,blat.proc3829877.chain_1499,blat.proc3829877.chain_1500	4	STRG.13011.2,blat.proc3829877.chain_1497,blat.proc3829877.chain_1501	3
scaffold_13	spliced_intron	6434028	6434177	-	asmbl_9750,asmbl_9751,asmbl_9752,asmbl_9753	none	STRG.15922.1,blat.proc3829895.chain_710,blat.proc3829895.chain_712,blat.proc3829895.chain_713,blat.proc3829895.chain_715	5	STRG.15922.2,blat.proc3829895.chain_716	2
scaffold_56	alt_acceptor	7799	7800	-	asmbl_46524	none	STRG.30051.2	1	STRG.30051.1,Trinity_GG_33867_c0_g1_i1	2
scaffold_2	spliced_intron	7827162	7827319	-	asmbl_23304	none	STRG.2079.2,Trinity_GG_18172_c0_g1_i3,blat.proc3829887.chain_1977	3	STRG.2079.3,Trinity_GG_18172_c0_g1_i1,blat.proc3829887.chain_1976	3
scaffold_2	alt_donor	862195	862196	+	asmbl_24136	none	STRG.1560.3	1	STRG.1560.1,STRG.1560.2,blat.proc3829871.chain_1607,blat.proc3829871.chain_1609,blat.proc3829871.chain_1611	5
scaffold_25	spliced_intron	8705024	8705177	+	asmbl_33752	none	blat.proc3829885.chain_691,blat.proc3829885.chain_702	2	Trinity_GG_15273_c0_g1_i6,Trinity_GG_15273_c0_g1_i8,blat.proc3829885.chain_697,blat.proc3829885.chain_700	4
scaffold_10	alternate_exon	12965702	12966253	+	asmbl_4841	none	STRG.12883.2,blat.proc3829877.chain_1424	2	STRG.12883.3,Trinity_GG_7087_c2_g1_i1,blat.proc3829877.chain_1426	3
scaffold_2	alt_acceptor	16285912	16285913	+	asmbl_25138,asmbl_25139	none	STRG.2560.2,blat.proc3829871.chain_2743,blat.proc3829871.chain_2744	3	STRG.2560.1,blat.proc3829871.chain_2742	2
scaffold_17	spliced_intron	10037074	10037314	-	asmbl_19272,asmbl_19275	none	STRG.20608.5,STRG.20608.6,Trinity_GG_28623_c0_g1_i4,blat.proc3829897.chain_1587	4	STRG.20608.1,STRG.20608.4,Trinity_GG_28623_c0_g1_i3,blat.proc3829897.chain_1589	4
scaffold_18	starts_in_intron	372253	372253	-	asmbl_19618	none	blat.proc3829897.chain_1878	1	STRG.20979.1,blat.proc3829897.chain_1875,blat.proc3829897.chain_1876,blat.proc3829897.chain_1879	4
scaffold_15	spliced_intron	12748652	12748931	+	asmbl_14540,asmbl_14541,asmbl_14544,asmbl_14545,asmbl_14546	none	STRG.18731.1,STRG.18731.2,STRG.18731.3,STRG.18731.4,blat.proc3829879.chain_3350,blat.proc3829879.chain_3351,blat.proc3829879.chain_3353	7	blat.proc3829879.chain_3352	1
scaffold_7	alt_acceptor	8330200	8330201	-	asmbl_49822	none	Trinity_GG_22126_c0_g1_i4,blat.proc3829891.chain_1313	2	STRG.9060.1,STRG.9060.2,blat.proc3829891.chain_1314,blat.proc3829891.chain_1315,blat.proc3829891.chain_1318	5
scaffold_7	retained_intron	12447826	12448128	-	asmbl_50041	none	blat.proc3829891.chain_1606	1	STRG.9342.1,STRG.9342.2,Trinity_GG_22282_c1_g1_i12,Trinity_GG_22282_c1_g1_i7,blat.proc3829891.chain_1604,blat.proc3829891.chain_1607,blat.proc3829891.chain_1608,blat.proc3829891.chain_1610,blat.proc3829891.chain_1611	9
scaffold_7	spliced_intron	17685023	17685192	+	asmbl_51373	none	STRG.9607.1,blat.proc3829875.chain_2044	2	Trinity_GG_5317_c0_g1_i2,blat.proc3829875.chain_2045	2
scaffold_340	spliced_intron	3284	3408	+	asmbl_40964,asmbl_40967	none	STRG.30267.1,STRG.30267.2	2	STRG.30267.3,STRG.30267.4,Trinity_GG_24051_c1_g1_i1,blat.proc3829893.chain_1095	4
scaffold_18	spliced_intron	1899014	1899766	-	asmbl_19688,asmbl_19689,asmbl_19692,asmbl_19694,asmbl_19699,asmbl_19700,asmbl_19703,asmbl_19704,asmbl_19706	none	STRG.21072.10,STRG.21072.3,STRG.21072.4,STRG.21072.9,blat.proc3829897.chain_1890,blat.proc3829897.chain_1892,blat.proc3829897.chain_1898,blat.proc3829897.chain_1902	8	STRG.21072.2,STRG.21072.6,STRG.21072.7,blat.proc3829897.chain_1897,blat.proc3829897.chain_1899,blat.proc3829897.chain_1900,blat.proc3829897.chain_1901	7
scaffold_5	alt_donor	9579663	9579664	-	asmbl_45671	none	STRG.6266.1	1	blat.proc3829889.chain_2352	1
scaffold_5	retained_exon	11630429	11630545	-	asmbl_45800	none	blat.proc3829889.chain_2525	1	blat.proc3829889.chain_2524	1
scaffold_6	retained_intron	42979	43126	-	asmbl_47960	none	STRG.7054.2	1	STRG.7054.1	1
scaffold_11	spliced_intron	9018627	9018713	-	asmbl_6885,asmbl_6886,asmbl_6888,asmbl_6889,asmbl_6890	none	STRG.13926.1,STRG.13926.2,blat.proc3829893.chain_2276,blat.proc3829893.chain_2277,blat.proc3829893.chain_2278,blat.proc3829893.chain_2279	6	Trinity_GG_24749_c0_g2_i1,blat.proc3829893.chain_2280	2
scaffold_6	skipped_exon	12900264	12901388	+	asmbl_47379	none	STRG.8040.2	1	STRG.8040.1,STRG.8040.3,blat.proc3829875.chain_412	3
scaffold_8	retained_intron	16397415	16397527	-	asmbl_53390,asmbl_53395,asmbl_53396,asmbl_53397,asmbl_53398,asmbl_53399	none	STRG.10619.1,blat.proc3829891.chain_2684,blat.proc3829891.chain_2685,blat.proc3829891.chain_2686,blat.proc3829891.chain_2688,blat.proc3829891.chain_2689,blat.proc3829891.chain_2691	7	STRG.10619.2,blat.proc3829891.chain_2687	2
scaffold_4	alt_donor	13113597	13113598	-	asmbl_41717,asmbl_41718	none	STRG.4951.2,blat.proc3829889.chain_1008	2	STRG.4951.1,STRG.4951.3,STRG.4951.4,blat.proc3829889.chain_1007,blat.proc3829889.chain_1009	5
scaffold_3	retained_intron	10929425	10929727	+	asmbl_40273	none	Trinity_GG_1999_c0_g1_i2,blat.proc3829871.chain_3711	2	STRG.3529.1,blat.proc3829871.chain_3710	2
scaffold_11	spliced_intron	13541556	13541653	+	asmbl_6037,asmbl_6039	none	STRG.14199.1,STRG.14199.2,Trinity_GG_7827_c0_g1_i2,blat.proc3829877.chain_2686	4	Trinity_GG_7827_c0_g1_i1,blat.proc3829877.chain_2687	2
scaffold_3	retained_intron	4889563	4889668	+	asmbl_39997	none	Trinity_GG_1775_c0_g1_i7,blat.proc3829871.chain_3326	2	blat.proc3829871.chain_3325	1
scaffold_20	spliced_intron	11942421	11942684	-	asmbl_27128,asmbl_27129	none	STRG.23682.1,STRG.23682.2,blat.proc3829899.chain_680,blat.proc3829899.chain_681	4	blat.proc3829899.chain_682	1
scaffold_4	spliced_intron	12691056	12691283	-	asmbl_41695,asmbl_41697	none	STRG.4910.1,blat.proc3829889.chain_919,blat.proc3829889.chain_920	3	STRG.4910.2,blat.proc3829889.chain_922	2
scaffold_2	retained_exon	7864425	7864751	-	asmbl_23309	none	STRG.2082.1,blat.proc3829887.chain_1979	2	STRG.2082.2,blat.proc3829887.chain_1980	2
scaffold_17	retained_intron	9533790	9533896	+	asmbl_18232,asmbl_18236	none	Trinity_GG_11250_c0_g1_i4,blat.proc3829881.chain_1349,blat.proc3829881.chain_1350	3	STRG.20566.1,STRG.20566.2,STRG.20566.3,STRG.20566.4,Trinity_GG_11250_c0_g1_i7,blat.proc3829881.chain_1352,blat.proc3829881.chain_1353,blat.proc3829881.chain_1356	8
scaffold_19	spliced_intron	7669634	7671322	-	asmbl_21460	none	STRG.22235.1	1	STRG.22235.2,blat.proc3829897.chain_2974	2
scaffold_4	spliced_intron	8426956	8427185	-	asmbl_41513	none	STRG.4672.2,blat.proc3829889.chain_775	2	blat.proc3829889.chain_776	1
scaffold_8	starts_in_intron	11954273	11954273	+	asmbl_52285	none	STRG.10389.2,blat.proc3829875.chain_2885	2	STRG.10389.1,blat.proc3829875.chain_2888	2
scaffold_18	ends_in_intron	1714863	1714863	-	asmbl_19675	none	Trinity_GG_28806_c0_g1_i3,blat.proc3829897.chain_1948	2	STRG.21051.1,Trinity_GG_28806_c0_g1_i1,Trinity_GG_28806_c0_g1_i2,blat.proc3829897.chain_1949,blat.proc3829897.chain_1950	5
scaffold_5	alternate_exon	10890321	10896229	-	asmbl_45767	none	STRG.6359.2,blat.proc3829889.chain_2353,blat.proc3829889.chain_2355	3	blat.proc3829889.chain_2354	1
scaffold_12	alt_donor	13403360	13403361	-	asmbl_8076	none	Trinity_GG_25519_c0_g1_i2,blat.proc3829893.chain_3624	2	STRG.15208.3,blat.proc3829893.chain_3626	2
scaffold_6	starts_in_intron	1499556	1499556	+	asmbl_46666	none	blat.proc3829873.chain_3358	1	STRG.7184.1,STRG.7184.2,STRG.7184.3,blat.proc3829873.chain_3355,blat.proc3829873.chain_3356	5
scaffold_2	alt_acceptor	2291937	2291938	-	asmbl_22908	none	STRG.1671.1	1	STRG.1671.2	1
scaffold_5	alt_donor	5591152	5591153	+	asmbl_44013	none	STRG.5973.2,blat.proc3829873.chain_2060	2	STRG.5973.1,blat.proc3829873.chain_2061	2
scaffold_6	starts_in_intron	4924924	4924924	-	asmbl_48315	none	blat.proc3829889.chain_3535	1	STRG.7462.1,STRG.7462.2,blat.proc3829889.chain_3533,blat.proc3829889.chain_3534	4
scaffold_23	ends_in_intron	5733428	5733428	+	asmbl_30890	none	Trinity_GG_14300_c0_g1_i2,blat.proc3829883.chain_2792	2	STRG.25924.1,STRG.25924.2,Trinity_GG_14300_c0_g1_i1,Trinity_GG_14300_c0_g1_i3,blat.proc3829883.chain_2790,blat.proc3829883.chain_2791	6
scaffold_5	spliced_intron	18265468	18265781	+	asmbl_44892,asmbl_44893,asmbl_44895,asmbl_44897	none	STRG.6959.1,STRG.6959.2,Trinity_GG_3828_c0_g1_i3,blat.proc3829873.chain_3103,blat.proc3829873.chain_3104,blat.proc3829873.chain_3107,blat.proc3829873.chain_3109	7	blat.proc3829873.chain_3105,blat.proc3829873.chain_3106	2
scaffold_4	spliced_intron	4414847	4415344	+	asmbl_42578	none	Trinity_GG_2404_c0_g1_i14,blat.proc3829873.chain_692	2	Trinity_GG_2404_c0_g1_i10,blat.proc3829873.chain_680,blat.proc3829873.chain_686,blat.proc3829873.chain_690,blat.proc3829873.chain_698	5
scaffold_11	spliced_intron	9281871	9282068	+	asmbl_5845,asmbl_5846	none	STRG.13960.1,Trinity_GG_7705_c0_g1_i3,blat.proc3829877.chain_2464	3	STRG.13960.2,Trinity_GG_7705_c0_g1_i1,blat.proc3829877.chain_2463	3
scaffold_2	starts_in_intron	6633586	6633586	-	asmbl_23242	none	Trinity_GG_18153_c0_g1_i8,blat.proc3829887.chain_1949	2	STRG.2025.1,STRG.2025.2,STRG.2025.3,blat.proc3829887.chain_1945,blat.proc3829887.chain_1946,blat.proc3829887.chain_1947,blat.proc3829887.chain_1948	7
scaffold_15	starts_in_intron	13635171	13635171	-	asmbl_15664	none	blat.proc3829895.chain_3527	1	STRG.18779.1	1
scaffold_19	retained_exon	12956212	12956267	-	asmbl_21775,asmbl_21776,asmbl_21777,asmbl_21779	none	STRG.22600.1,Trinity_GG_29572_c0_g1_i4,Trinity_GG_29572_c0_g1_i6,Trinity_GG_29572_c0_g1_i7,blat.proc3829897.chain_3292,blat.proc3829897.chain_3294,blat.proc3829897.chain_3295	7	Trinity_GG_29572_c0_g1_i2,blat.proc3829897.chain_3293	2
scaffold_10	starts_in_intron	6411970	6411970	-	asmbl_3368	none	blat.proc3829893.chain_849	1	STRG.12460.1,blat.proc3829893.chain_850	2
scaffold_11	starts_in_intron	15836219	15836219	+	asmbl_6121	none	blat.proc3829877.chain_2733	1	STRG.14312.1,STRG.14312.2,STRG.14312.3,STRG.14312.4,blat.proc3829877.chain_2734,blat.proc3829877.chain_2735,blat.proc3829877.chain_2737	7
scaffold_5	ends_in_intron	6017352	6017352	-	asmbl_45468	none	Trinity_GG_20407_c0_g1_i1,blat.proc3829889.chain_2113	2	STRG.6011.1,Trinity_GG_20407_c0_g2_i9,blat.proc3829889.chain_2114,blat.proc3829889.chain_2115	4
scaffold_14	alternate_exon	4154105	4154261	+	asmbl_11958	none	Trinity_GG_9341_c0_g1_i2	1	STRG.16957.1,STRG.16957.3	2
scaffold_13	starts_in_intron	7526508	7526508	-	asmbl_9860	none	blat.proc3829895.chain_830	1	STRG.16032.1,STRG.16032.2,STRG.16032.3,Trinity_GG_26032_c0_g1_i1,Trinity_GG_26032_c0_g1_i3,Trinity_GG_26032_c0_g1_i4,blat.proc3829895.chain_831,blat.proc3829895.chain_832,blat.proc3829895.chain_833	9
scaffold_18	alt_acceptor	1896938	1896939	-	asmbl_19688,asmbl_19691,asmbl_19692,asmbl_19694,asmbl_19696,asmbl_19703	none	STRG.21072.10,STRG.21072.7,STRG.21072.9,blat.proc3829897.chain_1890,blat.proc3829897.chain_1897	5	STRG.21072.4,STRG.21072.6	2
scaffold_12	ends_in_intron	7431111	7431111	+	asmbl_8719	none	blat.proc3829877.chain_3306	1	STRG.14810.1,STRG.14810.2,Trinity_GG_8184_c0_g1_i1,blat.proc3829877.chain_3305	4
scaffold_3	alternate_exon	7592346	7592544	+	asmbl_40126	none	Trinity_GG_1911_c0_g1_i1,blat.proc3829871.chain_3546	2	Trinity_GG_1911_c0_g1_i2,blat.proc3829871.chain_3545	2
scaffold_20	alt_donor	6308080	6308081	-	asmbl_26754	none	STRG.23214.1,blat.proc3829899.chain_255	2	STRG.23214.2	1
scaffold_12	alt_acceptor	10187905	10187906	-	asmbl_7862	none	STRG.14979.4	1	STRG.14979.1,STRG.14979.2,blat.proc3829893.chain_3401,blat.proc3829893.chain_3403,blat.proc3829893.chain_3405	5
scaffold_4	starts_in_intron	16664657	16664657	+	asmbl_43328	none	Trinity_GG_2887_c0_g1_i2,blat.proc3829873.chain_1484	2	STRG.5252.2,Trinity_GG_2887_c0_g1_i1,blat.proc3829873.chain_1483,blat.proc3829873.chain_1485,blat.proc3829873.chain_1486	5
scaffold_4	alt_acceptor	1332586	1332587	-	asmbl_41109,asmbl_41112	none	STRG.4173.3,blat.proc3829889.chain_302	2	STRG.4173.2,STRG.4173.4,STRG.4173.5,blat.proc3829889.chain_299,blat.proc3829889.chain_300,blat.proc3829889.chain_301	6
scaffold_16	starts_in_intron	441605	441605	-	asmbl_16039	none	blat.proc3829897.chain_28	1	STRG.19039.1,blat.proc3829897.chain_32	2
scaffold_7	retained_intron	6654846	6655304	-	asmbl_49743	none	STRG.8934.2,Trinity_GG_22098_c0_g1_i3,blat.proc3829891.chain_1262	3	STRG.8934.1,blat.proc3829891.chain_1261	2
scaffold_21	starts_in_intron	710012	710012	-	asmbl_27378,asmbl_27382	none	STRG.23751.2,Trinity_GG_30242_c0_g1_i2,blat.proc3829899.chain_817	3	STRG.23751.1,Trinity_GG_30242_c0_g1_i5,Trinity_GG_30242_c0_g1_i8,blat.proc3829899.chain_811,blat.proc3829899.chain_813,blat.proc3829899.chain_815	6
scaffold_27	alternate_exon	382928	383179	-	asmbl_36637	none	STRG.28547.5,blat.proc3829901.chain_1684	2	STRG.28547.2,blat.proc3829901.chain_1686	2
scaffold_15	spliced_intron	10633902	10633978	+	asmbl_14404	none	STRG.18539.2	1	STRG.18539.1,STRG.18539.3,blat.proc3829879.chain_3112,blat.proc3829879.chain_3113	4
scaffold_22	spliced_intron	485520	485567	+	asmbl_29150	none	STRG.24679.2	1	blat.proc3829883.chain_1727	1
scaffold_3	retained_intron	19407196	19407399	-	asmbl_39598	none	blat.proc3829889.chain_156	1	STRG.4084.3,blat.proc3829889.chain_158	2
scaffold_8	alt_acceptor	5698563	5698564	+	asmbl_51882	none	STRG.9980.1,Trinity_GG_5555_c1_g1_i1,blat.proc3829875.chain_2482	3	STRG.9980.2	1
scaffold_6	ends_in_intron	9138949	9138949	+	asmbl_47150,asmbl_47151,asmbl_47152,asmbl_47154,asmbl_47155	none	STRG.7784.1,STRG.7784.2,STRG.7784.3,STRG.7784.5,blat.proc3829875.chain_200	5	STRG.7784.4,blat.proc3829875.chain_195,blat.proc3829875.chain_197,blat.proc3829875.chain_198,blat.proc3829875.chain_201,blat.proc3829875.chain_202,blat.proc3829875.chain_203,blat.proc3829875.chain_204	8
scaffold_25	alt_donor	5158062	5158063	-	asmbl_34231	none	blat.proc3829901.chain_747	1	STRG.27422.1,blat.proc3829901.chain_743,blat.proc3829901.chain_746	3
scaffold_23	retained_intron	6289651	6289837	-	asmbl_31689,asmbl_31690,asmbl_31691,asmbl_31692,asmbl_31693,asmbl_31694	none	STRG.25954.2,Trinity_GG_31552_c0_g1_i2,Trinity_GG_31552_c0_g1_i3,Trinity_GG_31552_c0_g1_i4,Trinity_GG_31552_c0_g1_i6,blat.proc3829899.chain_3103,blat.proc3829899.chain_3104,blat.proc3829899.chain_3105,blat.proc3829899.chain_3106,blat.proc3829899.chain_3107	10	STRG.25954.1,Trinity_GG_31552_c0_g1_i5,Trinity_GG_31552_c0_g1_i7,blat.proc3829899.chain_3101,blat.proc3829899.chain_3102	5
scaffold_13	alt_acceptor	5948289	5948290	-	asmbl_9718,asmbl_9720	none	STRG.15896.2,STRG.15896.4	2	STRG.15896.1,STRG.15896.3,blat.proc3829895.chain_637,blat.proc3829895.chain_638	4
scaffold_21	alt_donor	8182157	8182158	+	asmbl_28810	none	STRG.24339.2	1	STRG.24339.1,blat.proc3829883.chain_1468	2
scaffold_28	starts_in_intron	9681174	9681174	+	asmbl_38497	none	blat.proc3829885.chain_3038,blat.proc3829885.chain_3040	2	STRG.29979.1,blat.proc3829885.chain_3039,blat.proc3829885.chain_3041	3
scaffold_2	alternate_exon	18952346	18954093	+	asmbl_25287	none	STRG.2768.1,Trinity_GG_1522_c0_g1_i2	2	STRG.2768.2,Trinity_GG_1522_c0_g1_i1,Trinity_GG_1522_c0_g1_i7	3
scaffold_20	alternate_exon	6665681	6665717	-	asmbl_26767	none	STRG.23229.2	1	STRG.23229.1,blat.proc3829899.chain_278	2
scaffold_5	starts_in_intron	10890300	10890300	-	asmbl_45768	none	blat.proc3829889.chain_2354	1	STRG.6359.1,blat.proc3829889.chain_2357,blat.proc3829889.chain_2358	3
scaffold_1	alt_acceptor	12050650	12050651	-	asmbl_688,asmbl_690	none	STRG.819.1,STRG.819.4	2	STRG.819.2,STRG.819.3	2
scaffold_3	alt_donor	16133701	16133702	-	asmbl_39433	none	STRG.3895.1,blat.proc3829887.chain_3709	2	STRG.3895.2	1
scaffold_4	ends_in_intron	8621696	8621696	-	asmbl_41520	none	Trinity_GG_19611_c0_g1_i4,blat.proc3829889.chain_742	2	blat.proc3829889.chain_741	1
scaffold_14	alternate_exon	9587109	9588720	+	asmbl_12271	none	STRG.17331.1,blat.proc3829879.chain_2066	2	blat.proc3829879.chain_2065	1
scaffold_24	retained_intron	3700697	3701118	+	asmbl_32173	none	blat.proc3829883.chain_3451	1	STRG.26537.1,blat.proc3829883.chain_3449,blat.proc3829883.chain_3450	3
scaffold_14	retained_intron	8338998	8339359	-	asmbl_13272	none	blat.proc3829895.chain_1873	1	STRG.17245.1,blat.proc3829895.chain_1872	2
scaffold_3170	spliced_intron	312	455	+	asmbl_40889	none	STRG.30808.2	1	STRG.30808.1	1
scaffold_10	retained_exon	1492349	1492523	-	asmbl_2976,asmbl_2980	none	STRG.12017.1,blat.proc3829893.chain_392,blat.proc3829893.chain_394	3	STRG.12017.2,STRG.12017.3,blat.proc3829893.chain_389,blat.proc3829893.chain_390	4
scaffold_22	alternate_exon	8189260	8191412	-	asmbl_30223	none	STRG.25152.3	1	STRG.25152.2	1
scaffold_6	alt_acceptor	3287459	3287460	-	asmbl_48183	none	STRG.7327.1	1	STRG.7327.3	1
scaffold_5	retained_intron	18514607	18514706	-	asmbl_46218	none	STRG.6974.1,blat.proc3829889.chain_2930	2	STRG.6974.2,blat.proc3829889.chain_2929	2
scaffold_15	alt_donor	13561766	13561767	-	asmbl_15658,asmbl_15659	none	STRG.18782.2,STRG.18782.3,blat.proc3829895.chain_3525	3	STRG.18782.1,blat.proc3829895.chain_3524	2
scaffold_18	alt_acceptor	8401324	8401325	+	asmbl_20861	none	STRG.21503.4	1	STRG.21503.2	1
scaffold_1	starts_in_intron	5746436	5746436	-	asmbl_304	none	blat.proc3829887.chain_252	1	STRG.372.1,blat.proc3829887.chain_251	2
scaffold_16	ends_in_intron	8646819	8646819	+	asmbl_17235	none	blat.proc3829881.chain_377	1	STRG.19480.1,STRG.19480.2,STRG.19480.3,blat.proc3829881.chain_373,blat.proc3829881.chain_374,blat.proc3829881.chain_375,blat.proc3829881.chain_376	7
scaffold_15	starts_in_intron	6961396	6961396	+	asmbl_14211	none	Trinity_GG_10041_c0_g1_i2,blat.proc3829879.chain_2931	2	STRG.18295.1,STRG.18295.2,blat.proc3829879.chain_2930,blat.proc3829879.chain_2933	4
scaffold_1	alt_acceptor	13925530	13925531	-	asmbl_866,asmbl_867	none	STRG.997.2,STRG.997.3	2	STRG.997.1,blat.proc3829887.chain_871	2
scaffold_13	spliced_intron	2270204	2270425	-	asmbl_9400,asmbl_9402,asmbl_9403	none	STRG.15533.1,STRG.15533.2,blat.proc3829895.chain_308,blat.proc3829895.chain_311	4	STRG.15533.3,blat.proc3829895.chain_310,blat.proc3829895.chain_317	3
scaffold_11	alt_donor	10001755	10001756	-	asmbl_6953	none	blat.proc3829893.chain_2435	1	STRG.14015.1,blat.proc3829893.chain_2434	2
scaffold_7	spliced_intron	13554150	13554287	-	asmbl_50128	none	STRG.9466.1,blat.proc3829891.chain_1631	2	blat.proc3829891.chain_1630	1
scaffold_13	alt_acceptor	16048993	16048994	+	asmbl_11525	none	STRG.16628.2	1	STRG.16628.1	1
scaffold_7	ends_in_intron	8173173	8173173	+	asmbl_50846	none	blat.proc3829875.chain_1468	1	STRG.9039.2,blat.proc3829875.chain_1471	2
scaffold_27	starts_in_intron	145217	145217	-	asmbl_36599,asmbl_36600	none	STRG.28528.1,Trinity_GG_32960_c0_g1_i1,blat.proc3829901.chain_1700	3	STRG.28528.2,Trinity_GG_32960_c0_g1_i2,blat.proc3829901.chain_1702	3
scaffold_6	alt_donor	5628740	5628741	+	asmbl_46901	none	STRG.7514.1,Trinity_GG_4106_c0_g1_i2,blat.proc3829873.chain_3618	3	STRG.7514.2,Trinity_GG_4106_c0_g1_i1,blat.proc3829873.chain_3617	3
scaffold_17	starts_in_intron	9752813	9752813	-	asmbl_19242	none	blat.proc3829897.chain_1463	1	STRG.20584.2,blat.proc3829897.chain_1464	2
scaffold_14	skipped_exon	404659	405204	+	asmbl_11726,asmbl_11727,asmbl_11728,asmbl_11729,asmbl_11730	none	STRG.16722.2,STRG.16722.5,STRG.16722.6,blat.proc3829879.chain_1467,blat.proc3829879.chain_1470	5	STRG.16722.1,STRG.16722.3,STRG.16722.4,Trinity_GG_9219_c0_g1_i21,Trinity_GG_9219_c0_g1_i3,Trinity_GG_9219_c0_g1_i6,blat.proc3829879.chain_1463,blat.proc3829879.chain_1464,blat.proc3829879.chain_1465,blat.proc3829879.chain_1468,blat.proc3829879.chain_1469,blat.proc3829879.chain_1474	12
scaffold_3	ends_in_intron	10609766	10609766	-	asmbl_39052	none	STRG.3497.4,Trinity_GG_18860_c3_g1_i1,blat.proc3829887.chain_3206	3	STRG.3497.1,STRG.3497.2,STRG.3497.3,blat.proc3829887.chain_3201,blat.proc3829887.chain_3202,blat.proc3829887.chain_3203	6
scaffold_1	starts_in_intron	11179512	11179512	+	asmbl_2067	none	blat.proc3829871.chain_816	1	STRG.743.1,STRG.743.2,STRG.743.3,STRG.743.4,STRG.743.5,blat.proc3829871.chain_815,blat.proc3829871.chain_819,blat.proc3829871.chain_820,blat.proc3829871.chain_821,blat.proc3829871.chain_822,blat.proc3829871.chain_823,blat.proc3829871.chain_824,blat.proc3829871.chain_825	13
scaffold_1	retained_intron	14334145	14334239	-	asmbl_895	none	STRG.1029.3,blat.proc3829887.chain_930	2	STRG.1029.1,STRG.1029.2,blat.proc3829887.chain_929,blat.proc3829887.chain_931	4
scaffold_21	ends_in_intron	5597998	5597998	-	asmbl_27710	none	Trinity_GG_30401_c0_g1_i1,blat.proc3829899.chain_1082	2	STRG.24081.1,STRG.24081.2,Trinity_GG_30401_c0_g1_i2,Trinity_GG_30401_c0_g1_i3,blat.proc3829899.chain_1083,blat.proc3829899.chain_1084	6
scaffold_18	alt_acceptor	2539030	2539031	+	asmbl_20438	none	STRG.21114.1,blat.proc3829881.chain_1978	2	STRG.21114.2,blat.proc3829881.chain_1980	2
scaffold_28	spliced_intron	535489	536046	-	asmbl_37230	none	STRG.29257.2,blat.proc3829901.chain_2299	2	STRG.29257.1,Trinity_GG_33347_c2_g1_i1,Trinity_GG_33347_c3_g1_i2,blat.proc3829901.chain_2298,blat.proc3829901.chain_2300	5
scaffold_12	starts_in_intron	15212723	15212723	+	asmbl_9079	none	Trinity_GG_8383_c0_g1_i4,blat.proc3829877.chain_3664	2	STRG.15307.3,Trinity_GG_8383_c0_g1_i3,blat.proc3829877.chain_3663	3
scaffold_5	ends_in_intron	13790024	13790024	-	asmbl_45936	none	Trinity_GG_20657_c0_g1_i1,blat.proc3829889.chain_2565	2	STRG.6581.2,blat.proc3829889.chain_2564	2
scaffold_12	spliced_intron	7499766	7499934	-	asmbl_7718	none	STRG.14811.3,blat.proc3829893.chain_3195	2	STRG.14811.1,blat.proc3829893.chain_3194	2
scaffold_9	alternate_exon	5247397	5247520	+	asmbl_54002	none	STRG.11095.2	1	STRG.11095.1,STRG.11095.3,blat.proc3829875.chain_3586	3
scaffold_11	spliced_intron	9021079	9021443	-	asmbl_6885,asmbl_6886,asmbl_6889,asmbl_6890	none	STRG.13926.1,STRG.13926.2,blat.proc3829893.chain_2276,blat.proc3829893.chain_2277,blat.proc3829893.chain_2279	5	blat.proc3829893.chain_2278	1
scaffold_4	alternate_exon	19678797	19678878	+	asmbl_43502	none	STRG.5556.1	1	STRG.5556.2,STRG.5556.3,Trinity_GG_3040_c0_g1_i2,Trinity_GG_3040_c0_g1_i3,blat.proc3829873.chain_1749,blat.proc3829873.chain_1750	6
scaffold_18	starts_in_intron	199705	199705	+	asmbl_20299	none	STRG.20965.2	1	STRG.20965.1,blat.proc3829881.chain_1839,blat.proc3829881.chain_1843	3
scaffold_28	spliced_intron	5358747	5358813	-	asmbl_37609	none	STRG.29661.1,blat.proc3829901.chain_2785	2	STRG.29661.2	1
scaffold_5	starts_in_intron	14797007	14797007	-	asmbl_46005	none	blat.proc3829889.chain_2709	1	STRG.6674.1,blat.proc3829889.chain_2710,blat.proc3829889.chain_2711	3
scaffold_28	starts_in_intron	7543281	7543281	+	asmbl_38391	none	blat.proc3829885.chain_2912	1	STRG.29815.1	1
scaffold_8	retained_intron	3796351	3797087	+	asmbl_51791	none	STRG.9863.1,Trinity_GG_5500_c0_g1_i1,Trinity_GG_5500_c0_g2_i1,blat.proc3829875.chain_2372,blat.proc3829875.chain_2373	5	STRG.9863.2	1
scaffold_11	alt_donor	15654316	15654317	-	asmbl_7176,asmbl_7182,asmbl_7183	none	STRG.14297.2,blat.proc3829893.chain_2730,blat.proc3829893.chain_2736,blat.proc3829893.chain_2737	4	STRG.14297.1,blat.proc3829893.chain_2729,blat.proc3829893.chain_2731,blat.proc3829893.chain_2732,blat.proc3829893.chain_2733	5
scaffold_5	starts_in_intron	7318300	7318300	+	asmbl_44150	none	Trinity_GG_3345_c0_g1_i2,blat.proc3829873.chain_2276	2	STRG.6121.1,STRG.6121.2,Trinity_GG_3345_c0_g1_i1,blat.proc3829873.chain_2275	4
scaffold_21	ends_in_intron	8012278	8012278	+	asmbl_28798	none	blat.proc3829883.chain_1453	1	STRG.24321.1,Trinity_GG_13468_c0_g1_i1,blat.proc3829883.chain_1455	3
scaffold_28	spliced_intron	226675	226779	-	asmbl_37223,asmbl_37224	none	STRG.29227.1,STRG.29227.2	2	STRG.29227.3	1
scaffold_5	spliced_intron	11644624	11644686	+	asmbl_44427	none	STRG.6416.1	1	STRG.6416.2,blat.proc3829873.chain_2518	2
scaffold_12	alt_donor	7335088	7335089	+	asmbl_8707,asmbl_8709	none	STRG.14799.1,STRG.14799.3,blat.proc3829877.chain_3296	3	STRG.14799.2,blat.proc3829877.chain_3297	2
scaffold_15	skipped_exon	15346021	15347989	+	asmbl_14703	none	STRG.18908.2	1	STRG.18908.1	1
scaffold_19	retained_intron	3309537	3309592	-	asmbl_21305	none	STRG.22005.1,Trinity_GG_29263_c0_g1_i1,blat.proc3829897.chain_2730	3	STRG.22005.2	1
scaffold_10	skipped_exon	926155	927706	-	asmbl_2930	none	STRG.11959.2	1	STRG.11959.1,Trinity_GG_23671_c0_g1_i3,blat.proc3829893.chain_420	3
scaffold_24	retained_intron	10779344	10779463	-	asmbl_33212	none	blat.proc3829901.chain_293	1	STRG.27021.1,blat.proc3829901.chain_292,blat.proc3829901.chain_294,blat.proc3829901.chain_296	4
scaffold_17	alternate_exon	5070791	5070822	+	asmbl_17934	none	STRG.20221.3	1	STRG.20221.1,STRG.20221.2,STRG.20221.4,STRG.20221.5,Trinity_GG_11042_c0_g1_i2,Trinity_GG_11042_c0_g1_i3,blat.proc3829881.chain_970,blat.proc3829881.chain_971	8
scaffold_8	alt_acceptor	11829367	11829368	+	asmbl_52262	none	STRG.10379.1	1	STRG.10379.2,blat.proc3829875.chain_2918	2
scaffold_1	ends_in_intron	44436	44436	-	asmbl_4	none	Trinity_GG_17053_c0_g1_i4,blat.proc3829885.chain_3730	2	STRG.19.3,blat.proc3829885.chain_3729,blat.proc3829885.chain_3731	3
scaffold_21	retained_exon	9706196	9706311	-	asmbl_27983	none	STRG.24416.2	1	STRG.24416.1	1
scaffold_19	starts_in_intron	12105004	12105004	+	asmbl_22549	none	blat.proc3829881.chain_3475	1	STRG.22525.1,blat.proc3829881.chain_3474	2
scaffold_27	starts_in_intron	3092302	3092302	-	asmbl_36847	none	STRG.28775.2	1	STRG.28775.1,STRG.28775.3,STRG.28775.4,STRG.28775.5,blat.proc3829901.chain_1946,blat.proc3829901.chain_1947,blat.proc3829901.chain_1951	7
scaffold_22	starts_in_intron	7206818	7206818	-	asmbl_30147	none	blat.proc3829899.chain_2092	1	blat.proc3829899.chain_2093	1
scaffold_3	retained_intron	7727603	7727817	+	asmbl_40135	none	blat.proc3829871.chain_3541	1	STRG.3360.1,blat.proc3829871.chain_3540	2
scaffold_16	retained_intron	11303194	11303588	+	asmbl_17377	none	STRG.19647.1,Trinity_GG_10757_c1_g1_i1,blat.proc3829881.chain_507,blat.proc3829881.chain_508	4	STRG.19647.2,Trinity_GG_10757_c1_g1_i3,blat.proc3829881.chain_509	3
scaffold_6	spliced_intron	9091532	9091638	-	asmbl_48539	none	STRG.7779.1,blat.proc3829891.chain_32	2	STRG.7779.2,blat.proc3829891.chain_31	2
scaffold_26	skipped_exon	8586487	8587671	-	asmbl_35007	none	STRG.28429.1,blat.proc3829901.chain_1498	2	STRG.28429.2,blat.proc3829901.chain_1500	2
scaffold_20	ends_in_intron	10132563	10132563	+	asmbl_26088	none	STRG.23543.1,Trinity_GG_13021_c0_g1_i3,blat.proc3829883.chain_651	3	STRG.23543.2,blat.proc3829883.chain_650	2
scaffold_2	spliced_intron	10655085	10655168	+	asmbl_24749,asmbl_24750	none	STRG.2226.1,blat.proc3829871.chain_2318,blat.proc3829871.chain_2320	3	STRG.2226.2	1
scaffold_19	ends_in_intron	5462132	5462132	+	asmbl_22176	none	blat.proc3829881.chain_3061	1	STRG.22103.1,blat.proc3829881.chain_3055,blat.proc3829881.chain_3056,blat.proc3829881.chain_3058	4
scaffold_701	alt_donor	4744	4745	-	asmbl_51552	none	STRG.30415.2,blat.proc3829901.chain_3453	2	STRG.30415.1,blat.proc3829901.chain_3452	2
scaffold_9	spliced_intron	3672539	3672630	-	asmbl_54884,asmbl_54885,asmbl_54890	none	STRG.10971.1,STRG.10971.3,blat.proc3829891.chain_3078,blat.proc3829891.chain_3084,blat.proc3829891.chain_3085	5	blat.proc3829891.chain_3082	1
scaffold_5	spliced_intron	15031404	15031492	-	asmbl_46012	none	STRG.6687.1,blat.proc3829889.chain_2685	2	blat.proc3829889.chain_2687	1
scaffold_21	alt_acceptor	10868428	10868429	-	asmbl_28107	none	STRG.24546.1,blat.proc3829899.chain_1698	2	STRG.24546.2	1
scaffold_1	ends_in_intron	11457035	11457035	-	asmbl_632	none	Trinity_GG_17417_c0_g1_i3,blat.proc3829887.chain_652	2	STRG.757.1,blat.proc3829887.chain_651	2
scaffold_17	alt_acceptor	9240503	9240504	+	asmbl_18198	none	STRG.20536.2,Trinity_GG_11257_c0_g1_i1,blat.proc3829881.chain_1364	3	STRG.20536.1,Trinity_GG_11257_c0_g1_i2,blat.proc3829881.chain_1365	3
scaffold_9	ends_in_intron	1696880	1696880	-	asmbl_54806	none	Trinity_GG_23045_c0_g2_i1,blat.proc3829891.chain_3024	2	STRG.10854.1	1
scaffold_9	alt_acceptor	9734381	9734382	+	asmbl_54227,asmbl_54228	none	STRG.11341.3,blat.proc3829877.chain_145,blat.proc3829877.chain_148,blat.proc3829877.chain_150,blat.proc3829877.chain_151,blat.proc3829877.chain_153	6	STRG.11341.1,STRG.11341.4,blat.proc3829877.chain_146	3
scaffold_2	retained_intron	16401404	16401522	+	asmbl_25168	none	STRG.2579.3	1	STRG.2579.1,STRG.2579.2,Trinity_GG_1460_c0_g1_i4,blat.proc3829871.chain_2772,blat.proc3829871.chain_2773	5
scaffold_6	starts_in_intron	3385730	3385730	-	asmbl_48201	none	blat.proc3829889.chain_3336	1	STRG.7343.1,STRG.7343.2,blat.proc3829889.chain_3337,blat.proc3829889.chain_3338,blat.proc3829889.chain_3339	5
scaffold_2	retained_intron	888918	889046	+	asmbl_24146,asmbl_24147,asmbl_24150,asmbl_24152	none	STRG.1564.1,STRG.1564.2,STRG.1564.3,STRG.1564.4,Trinity_GG_856_c0_g1_i3,blat.proc3829871.chain_1548	6	STRG.1564.5,blat.proc3829871.chain_1546	2
scaffold_9	retained_intron	14817657	14817753	-	asmbl_55459,asmbl_55466	none	STRG.11693.2,Trinity_GG_23432_c0_g1_i6,blat.proc3829893.chain_9	3	STRG.11693.5,blat.proc3829893.chain_3	2
scaffold_20	retained_intron	8578419	8578764	-	asmbl_26926	none	blat.proc3829899.chain_318	1	STRG.23398.1,blat.proc3829899.chain_319	2
scaffold_3	alt_acceptor	7722269	7722270	-	asmbl_38936	none	STRG.3357.2,blat.proc3829887.chain_3159	2	STRG.3357.1	1
scaffold_14	alt_acceptor	8707815	8707816	+	asmbl_12246	none	STRG.17290.2,blat.proc3829879.chain_2032	2	STRG.17290.1	1
scaffold_4	starts_in_intron	19522284	19522284	-	asmbl_42197	none	Trinity_GG_20090_c0_g1_i1,blat.proc3829889.chain_1552	2	STRG.5535.1,blat.proc3829889.chain_1550,blat.proc3829889.chain_1551,blat.proc3829889.chain_1553	4
scaffold_3	alternate_exon	18159942	18159988	-	asmbl_39542,asmbl_39543,asmbl_39544	none	STRG.4023.1,STRG.4023.2,STRG.4023.3,blat.proc3829889.chain_96,blat.proc3829889.chain_97	5	STRG.4023.4	1
scaffold_21	retained_intron	5770329	5771473	-	asmbl_27720	none	blat.proc3829899.chain_1196	1	STRG.24099.1,STRG.24099.2,STRG.24099.3,blat.proc3829899.chain_1198,blat.proc3829899.chain_1199,blat.proc3829899.chain_1200,blat.proc3829899.chain_1202	7
scaffold_28	retained_intron	4267785	4268006	+	asmbl_38228	none	STRG.29594.2,blat.proc3829885.chain_2712	2	STRG.29594.1,Trinity_GG_16413_c0_g1_i1,blat.proc3829885.chain_2713	3
scaffold_10	alt_donor	12885136	12885137	+	asmbl_4824	none	STRG.12869.1,Trinity_GG_7102_c0_g1_i1,Trinity_GG_7102_c0_g1_i2,blat.proc3829877.chain_1452,blat.proc3829877.chain_1453	5	STRG.12869.2,blat.proc3829877.chain_1454	2
scaffold_16	skipped_exon	8584387	8585369	+	asmbl_17215,asmbl_17217,asmbl_17220,asmbl_17221	none	STRG.19477.4,STRG.19477.6,blat.proc3829881.chain_354,blat.proc3829881.chain_357	4	STRG.19477.1,STRG.19477.2,STRG.19477.3,STRG.19477.5,STRG.19477.7,STRG.19477.8,Trinity_GG_10676_c0_g1_i5,blat.proc3829881.chain_353,blat.proc3829881.chain_355,blat.proc3829881.chain_358,blat.proc3829881.chain_359	11
scaffold_19	ends_in_intron	3682970	3682970	+	asmbl_22139	none	blat.proc3829881.chain_3006	1	STRG.22046.4	1
scaffold_5	retained_intron	18562167	18562393	+	asmbl_44920,asmbl_44921	none	STRG.6978.3,STRG.6978.5,Trinity_GG_3847_c0_g1_i3,blat.proc3829873.chain_3149	4	STRG.6978.1,STRG.6978.2,STRG.6978.4,blat.proc3829873.chain_3147	4
scaffold_15	alt_acceptor	9483593	9483594	-	asmbl_15403	none	STRG.18456.1	1	STRG.18456.2,Trinity_GG_27343_c0_g1_i1,blat.proc3829895.chain_3127	3
scaffold_2	starts_in_intron	20443503	20443503	+	asmbl_25367	none	Trinity_GG_1624_c0_g1_i2,blat.proc3829871.chain_3042	2	STRG.2886.1,Trinity_GG_1624_c0_g1_i1,blat.proc3829871.chain_3041	3
scaffold_5	starts_in_intron	14130962	14130962	+	asmbl_44576	none	Trinity_GG_3576_c0_g1_i3,blat.proc3829873.chain_2691	2	STRG.6613.1,blat.proc3829873.chain_2689	2
scaffold_9	starts_in_intron	8944453	8944453	-	asmbl_55112,asmbl_55113	none	STRG.11268.1,STRG.11268.2	2	blat.proc3829891.chain_3361,blat.proc3829891.chain_3362,blat.proc3829891.chain_3363	3
scaffold_28	alt_donor	5638054	5638055	-	asmbl_37630,asmbl_37631,asmbl_37635,asmbl_37636,asmbl_37637	none	STRG.29677.1,STRG.29677.2,STRG.29677.3,Trinity_GG_33665_c0_g1_i3,blat.proc3829901.chain_2822,blat.proc3829901.chain_2823,blat.proc3829901.chain_2825,blat.proc3829901.chain_2827	8	STRG.29677.4,blat.proc3829901.chain_2824	2
scaffold_14	retained_intron	6987427	6987843	-	asmbl_13156	none	blat.proc3829895.chain_1835	1	STRG.17122.1,blat.proc3829895.chain_1833	2
scaffold_16	retained_exon	7228891	7228941	-	asmbl_16344,asmbl_16346,asmbl_16355	none	STRG.19382.3,STRG.19382.6,STRG.19382.7	3	STRG.19382.1	1
scaffold_23	alternate_exon	10204072	10204330	-	asmbl_31849	none	Trinity_GG_31625_c0_g1_i1,blat.proc3829899.chain_3228	2	STRG.26215.3	1
scaffold_15	alt_acceptor	14323219	14323220	-	asmbl_15735	none	Trinity_GG_27599_c0_g1_i7,blat.proc3829895.chain_3600	2	STRG.18855.3	1
scaffold_28	starts_in_intron	2119210	2119210	+	asmbl_38023	none	STRG.29350.2	1	STRG.29350.1,blat.proc3829885.chain_2476,blat.proc3829885.chain_2477	3
scaffold_13	retained_intron	12253613	12253769	+	asmbl_11333	none	blat.proc3829879.chain_1005	1	STRG.16339.1,Trinity_GG_8947_c0_g1_i3,blat.proc3829879.chain_1007	3
scaffold_10	skipped_exon	5177142	5178792	+	asmbl_4426,asmbl_4428	none	STRG.12337.2,blat.proc3829877.chain_983	2	STRG.12337.1,blat.proc3829877.chain_984,blat.proc3829877.chain_985	3
scaffold_9	ends_in_intron	4292241	4292241	-	asmbl_54927	none	Trinity_GG_23137_c0_g1_i1,blat.proc3829891.chain_3194	2	STRG.11022.1	1
scaffold_16	starts_in_intron	2170255	2170255	+	asmbl_16905	none	blat.proc3829879.chain_3736	1	STRG.19105.1,STRG.19105.2,blat.proc3829879.chain_3733,blat.proc3829879.chain_3737,blat.proc3829879.chain_3738,blat.proc3829879.chain_3739	6
scaffold_2	alt_donor	6534309	6534310	+	asmbl_24506	none	STRG.2017.2,Trinity_GG_1130_c0_g1_i2,blat.proc3829871.chain_2062	3	STRG.2017.1,Trinity_GG_1130_c0_g1_i3,blat.proc3829871.chain_2061	3
scaffold_16	starts_in_intron	12347114	12347114	+	asmbl_17442	none	blat.proc3829881.chain_622	1	STRG.19733.1,blat.proc3829881.chain_623	2
scaffold_6	retained_intron	573750	573950	+	asmbl_46616	none	STRG.7105.1,Trinity_GG_3890_c0_g1_i1,blat.proc3829873.chain_3209	3	STRG.7105.2,blat.proc3829873.chain_3210	2
scaffold_3	retained_intron	17362106	17362259	-	asmbl_39493,asmbl_39495,asmbl_39496,asmbl_39498,asmbl_39499,asmbl_39502,asmbl_39503	none	STRG.3972.2,STRG.3972.3,STRG.3972.4,Trinity_GG_19202_c0_g1_i17,blat.proc3829889.chain_23,blat.proc3829889.chain_24,blat.proc3829889.chain_26,blat.proc3829889.chain_27,blat.proc3829889.chain_28	9	STRG.3972.1,blat.proc3829889.chain_22,blat.proc3829889.chain_25,blat.proc3829889.chain_31	4
scaffold_3	starts_in_intron	5007480	5007480	+	asmbl_40013	none	Trinity_GG_1799_c3_g1_i1,blat.proc3829871.chain_3371	2	STRG.3199.1,STRG.3199.2,STRG.3199.4,blat.proc3829871.chain_3366	4
scaffold_2	spliced_intron	5183182	5183574	-	asmbl_23162	none	blat.proc3829887.chain_1859	1	STRG.1936.1,blat.proc3829887.chain_1855	2
scaffold_7	spliced_intron	7927994	7928676	-	asmbl_49792,asmbl_49793	none	STRG.9028.1,blat.proc3829891.chain_1304,blat.proc3829891.chain_1305	3	blat.proc3829891.chain_1306	1
scaffold_27	skipped_exon	7521642	7522244	+	asmbl_36423	none	STRG.29096.1	1	STRG.29096.4	1
scaffold_14	ends_in_intron	8645218	8645218	+	asmbl_12238	none	blat.proc3829879.chain_1942	1	STRG.17282.2	1
scaffold_4	alt_donor	5231465	5231466	-	asmbl_41312	none	STRG.4417.1,blat.proc3829889.chain_439	2	STRG.4417.2,STRG.4417.3,STRG.4417.5,blat.proc3829889.chain_436,blat.proc3829889.chain_437	5
scaffold_17	retained_exon	791861	791911	+	asmbl_17704,asmbl_17705	none	STRG.19917.1,STRG.19917.2	2	blat.proc3829881.chain_713	1
scaffold_1	ends_in_intron	3506220	3506220	-	asmbl_145	none	STRG.218.1,Trinity_GG_17145_c0_g1_i6,blat.proc3829887.chain_115	3	blat.proc3829887.chain_116,blat.proc3829887.chain_117,blat.proc3829887.chain_118,blat.proc3829887.chain_120,blat.proc3829887.chain_122,blat.proc3829887.chain_124,blat.proc3829887.chain_125	7
scaffold_2	skipped_exon	9159684	9161313	+	asmbl_24705,asmbl_24707	none	STRG.2163.1,Trinity_GG_1225_c0_g1_i1,Trinity_GG_1225_c0_g1_i2,blat.proc3829871.chain_2280,blat.proc3829871.chain_2281	5	STRG.2163.2	1
scaffold_8	retained_intron	16539028	16539118	-	asmbl_53436	none	blat.proc3829891.chain_2800	1	STRG.10629.1,blat.proc3829891.chain_2801,blat.proc3829891.chain_2802	3
scaffold_13	spliced_intron	14015268	14015390	-	asmbl_10134	none	blat.proc3829895.chain_1198,blat.proc3829895.chain_1201	2	blat.proc3829895.chain_1199	1
scaffold_13	ends_in_intron	386304	386304	-	asmbl_9302	none	Trinity_GG_25648_c0_g1_i6	1	STRG.15422.1,STRG.15422.2,Trinity_GG_25648_c0_g1_i8,blat.proc3829895.chain_129,blat.proc3829895.chain_130,blat.proc3829895.chain_132	6
scaffold_1	starts_in_intron	14429021	14429021	+	asmbl_2376	none	blat.proc3829871.chain_1035	1	STRG.1043.1,STRG.1043.2,blat.proc3829871.chain_1034,blat.proc3829871.chain_1036	4
scaffold_18	spliced_intron	2835065	2835573	+	asmbl_20452	none	STRG.21133.5	1	Trinity_GG_11580_c0_g1_i11,blat.proc3829881.chain_1919	2
scaffold_5	alt_acceptor	7029551	7029552	+	asmbl_44136,asmbl_44137	none	STRG.6108.2,STRG.6108.3	2	STRG.6108.1,STRG.6108.4,blat.proc3829873.chain_2262	3
scaffold_13	retained_exon	4602224	4602250	-	asmbl_9606	none	STRG.15781.1	1	blat.proc3829895.chain_533	1
scaffold_21	alt_donor	8230979	8230980	-	asmbl_27925	none	STRG.24344.4	1	STRG.24344.1,STRG.24344.2,blat.proc3829899.chain_1446	3
scaffold_5	alt_donor	6324224	6324225	+	asmbl_44083	none	STRG.6037.3	1	STRG.6037.1	1
scaffold_2	retained_exon	6761639	6761771	-	asmbl_23259,asmbl_23260	none	STRG.2030.1,STRG.2030.4,blat.proc3829887.chain_1919	3	STRG.2030.3,blat.proc3829887.chain_1918	2
scaffold_1	retained_exon	13100303	13100328	-	asmbl_800	none	blat.proc3829887.chain_824	1	STRG.941.2,blat.proc3829887.chain_823	2
scaffold_23	retained_intron	6778984	6779031	+	asmbl_30951	none	Trinity_GG_14348_c0_g1_i1	1	STRG.25993.1	1
scaffold_20	retained_intron	11597678	11597826	-	asmbl_27095	none	STRG.23657.1	1	STRG.23657.2,STRG.23657.3	2
scaffold_23	starts_in_intron	2200958	2200958	-	asmbl_31427	none	blat.proc3829899.chain_2791	1	STRG.25670.1,STRG.25670.2	2
scaffold_3	spliced_intron	5951813	5951900	-	asmbl_38833,asmbl_38834,asmbl_38835,asmbl_38836,asmbl_38837	none	STRG.3255.1,STRG.3255.2,STRG.3255.3,STRG.3255.5,STRG.3255.7,blat.proc3829887.chain_3044,blat.proc3829887.chain_3045,blat.proc3829887.chain_3046,blat.proc3829887.chain_3047	9	STRG.3255.6,blat.proc3829887.chain_3048,blat.proc3829887.chain_3049	3
scaffold_11	spliced_intron	8790313	8790358	-	asmbl_6859	none	STRG.13891.4	1	STRG.13891.2	1
scaffold_17	ends_in_intron	9489146	9489146	+	asmbl_18222	none	blat.proc3829881.chain_1327	1	STRG.20558.1,STRG.20558.2,STRG.20558.3,Trinity_GG_11244_c0_g1_i4,blat.proc3829881.chain_1326,blat.proc3829881.chain_1328,blat.proc3829881.chain_1329,blat.proc3829881.chain_1330,blat.proc3829881.chain_1331	9
scaffold_3	retained_intron	5951454	5951658	-	asmbl_38838,asmbl_38841	none	STRG.3255.6,blat.proc3829887.chain_3048,blat.proc3829887.chain_3049	3	STRG.3255.1,STRG.3255.2,STRG.3255.3,blat.proc3829887.chain_3044,blat.proc3829887.chain_3045,blat.proc3829887.chain_3046	6
scaffold_5	retained_exon	15418254	15418370	-	asmbl_46047	none	STRG.6723.1,blat.proc3829889.chain_2796	2	STRG.6723.2,blat.proc3829889.chain_2799	2
scaffold_14	starts_in_intron	15398128	15398128	-	asmbl_13705	none	blat.proc3829895.chain_2484	1	STRG.17757.1,STRG.17757.2,blat.proc3829895.chain_2485,blat.proc3829895.chain_2486	4
scaffold_6	alternate_exon	3056262	3056923	+	asmbl_46753	none	blat.proc3829873.chain_3442	1	blat.proc3829873.chain_3441	1
scaffold_22	starts_in_intron	4570617	4570617	+	asmbl_29311	none	Trinity_GG_13743_c0_g2_i1,blat.proc3829883.chain_1909	2	STRG.24870.1,blat.proc3829883.chain_1908	2
scaffold_5	alternate_exon	4755266	4755296	+	asmbl_43962	none	Trinity_GG_3243_c0_g1_i3	1	STRG.5927.1,blat.proc3829873.chain_2070,blat.proc3829873.chain_2071	3
scaffold_4	alt_acceptor	4095810	4095811	+	asmbl_42543,asmbl_42547	none	STRG.4313.4,blat.proc3829873.chain_631	2	STRG.4313.1,STRG.4313.3,blat.proc3829873.chain_635,blat.proc3829873.chain_636	4
scaffold_13	ends_in_intron	8301687	8301687	+	asmbl_11104	none	blat.proc3829879.chain_868	1	STRG.16108.1,STRG.16108.2,blat.proc3829879.chain_867	3
scaffold_27	ends_in_intron	1131896	1131896	-	asmbl_36696	none	blat.proc3829901.chain_1726	1	STRG.28594.1,blat.proc3829901.chain_1725	2
scaffold_15	ends_in_intron	5477377	5477377	-	asmbl_15228	none	blat.proc3829895.chain_2999	1	STRG.18228.1	1
scaffold_24	alt_acceptor	9121852	9121853	+	asmbl_32517	none	STRG.26917.1,Trinity_GG_14864_c0_g1_i4,blat.proc3829885.chain_20	3	STRG.26917.2	1
scaffold_1	ends_in_intron	4224979	4224979	+	asmbl_1641	none	Trinity_GG_179_c1_g1_i1	1	STRG.249.1,STRG.249.2,blat.proc3829871.chain_306,blat.proc3829871.chain_307,blat.proc3829871.chain_308	5
scaffold_17	alternate_exon	2535414	2535563	-	asmbl_18806	none	STRG.20035.3	1	STRG.20035.1,STRG.20035.2,blat.proc3829897.chain_984,blat.proc3829897.chain_985,blat.proc3829897.chain_987	5
scaffold_26	skipped_exon	1994935	1997416	+	asmbl_35259	none	STRG.27926.2	1	STRG.27926.1,blat.proc3829885.chain_907	2
scaffold_4	skipped_exon	14318583	14318899	-	asmbl_41788	none	STRG.5045.3,blat.proc3829889.chain_1095	2	STRG.5045.1,blat.proc3829889.chain_1094	2
scaffold_13	alt_donor	388060	388061	-	asmbl_9298	none	STRG.15422.2,blat.proc3829895.chain_132	2	STRG.15422.1,blat.proc3829895.chain_130	2
scaffold_15	starts_in_intron	10663513	10663513	-	asmbl_15465	none	blat.proc3829895.chain_3274	1	STRG.18541.1,blat.proc3829895.chain_3273	2
scaffold_10	skipped_exon	948696	949038	+	asmbl_4173,asmbl_4174	none	STRG.11969.1,Trinity_GG_6645_c0_g1_i1,Trinity_GG_6645_c0_g1_i4,blat.proc3829877.chain_651,blat.proc3829877.chain_653	5	STRG.11969.2,Trinity_GG_6645_c0_g1_i3,blat.proc3829877.chain_649	3
scaffold_7	alternate_exon	1227342	1233709	+	asmbl_50474	none	Trinity_GG_4740_c0_g1_i16,blat.proc3829875.chain_1042	2	blat.proc3829875.chain_1043	1
scaffold_12	skipped_exon	3008799	3009809	-	asmbl_7479	none	STRG.14536.1,blat.proc3829893.chain_2902	2	STRG.14536.2	1
scaffold_14	alt_donor	8414381	8414382	-	asmbl_13295	none	STRG.17263.1,blat.proc3829895.chain_1969	2	STRG.17263.2,blat.proc3829895.chain_1970	2
scaffold_20	ends_in_intron	11078487	11078487	-	asmbl_27059	none	blat.proc3829899.chain_625	1	STRG.23611.1,STRG.23611.2,blat.proc3829899.chain_622,blat.proc3829899.chain_624,blat.proc3829899.chain_626,blat.proc3829899.chain_627	6
scaffold_19	alt_acceptor	729022	729023	+	asmbl_22005	none	STRG.21851.4	1	STRG.21851.1,STRG.21851.2,STRG.21851.3,blat.proc3829881.chain_2836	4
scaffold_12	spliced_intron	5039289	5039416	-	asmbl_7604,asmbl_7605	none	STRG.14668.1,STRG.14668.2,blat.proc3829893.chain_2958	3	blat.proc3829893.chain_2957	1
scaffold_6	alt_donor	11482302	11482303	+	asmbl_47264,asmbl_47267,asmbl_47268,asmbl_47270	none	STRG.7936.1,STRG.7936.3,blat.proc3829875.chain_299,blat.proc3829875.chain_301,blat.proc3829875.chain_304	5	STRG.7936.2,blat.proc3829875.chain_300	2
scaffold_10	skipped_exon	17394143	17395941	+	asmbl_5047	none	STRG.13179.3	1	STRG.13179.1,STRG.13179.2	2
scaffold_9	retained_intron	17658989	17659123	-	asmbl_55632,asmbl_55633	none	STRG.11840.1,STRG.11840.2,Trinity_GG_23537_c0_g1_i3,Trinity_GG_23537_c0_g1_i4,blat.proc3829893.chain_175,blat.proc3829893.chain_176	6	STRG.11840.3,Trinity_GG_23537_c0_g1_i1,blat.proc3829893.chain_177	3
scaffold_12	skipped_exon	10187619	10188436	-	asmbl_7860	none	STRG.14979.2,blat.proc3829893.chain_3405	2	STRG.14979.5,STRG.14979.6,blat.proc3829893.chain_3400	3
scaffold_2	retained_intron	8064152	8064334	+	asmbl_24646	none	Trinity_GG_1147_c0_g1_i1,blat.proc3829871.chain_2095	2	STRG.2103.1,blat.proc3829871.chain_2094	2
scaffold_14	retained_intron	11676499	11677256	-	asmbl_13506	none	STRG.17497.3,blat.proc3829895.chain_2193	2	STRG.17497.1,blat.proc3829895.chain_2192	2
scaffold_13	alt_acceptor	11979299	11979300	-	asmbl_10082	none	STRG.16317.1	1	blat.proc3829895.chain_1066	1
scaffold_18	alternate_exon	8883789	8885318	-	asmbl_20071	none	STRG.21540.1,blat.proc3829897.chain_2288	2	STRG.21540.2	1
scaffold_4	retained_intron	4413750	4414043	+	asmbl_42582,asmbl_42591,asmbl_42592	none	blat.proc3829873.chain_684,blat.proc3829873.chain_691,blat.proc3829873.chain_693	3	STRG.4344.1,STRG.4344.3,STRG.4344.4,blat.proc3829873.chain_682,blat.proc3829873.chain_694,blat.proc3829873.chain_697	6
scaffold_14	starts_in_intron	6292386	6292386	+	asmbl_12046	none	Trinity_GG_9404_c0_g1_i3,blat.proc3829879.chain_1811	2	STRG.17067.1,Trinity_GG_9404_c0_g1_i4,blat.proc3829879.chain_1812,blat.proc3829879.chain_1813,blat.proc3829879.chain_1814	5
scaffold_1	spliced_intron	14189225	14189671	-	asmbl_872,asmbl_877,asmbl_878,asmbl_879,asmbl_880	none	STRG.1005.1,blat.proc3829887.chain_944,blat.proc3829887.chain_945,blat.proc3829887.chain_947,blat.proc3829887.chain_948,blat.proc3829887.chain_949	6	Trinity_GG_17568_c0_g1_i7,blat.proc3829887.chain_946	2
scaffold_8	alternate_exon	850418	850614	+	asmbl_51663	none	STRG.9734.1	1	STRG.9734.3,blat.proc3829875.chain_2146	2
scaffold_13	skipped_exon	1380070	1380423	-	asmbl_9367,asmbl_9368	none	blat.proc3829895.chain_207,blat.proc3829895.chain_209	2	STRG.15491.1,STRG.15491.2,blat.proc3829895.chain_208,blat.proc3829895.chain_210	4
scaffold_8	retained_intron	8969632	8969801	-	asmbl_52980	none	blat.proc3829891.chain_2311	1	STRG.10140.1,STRG.10140.2,blat.proc3829891.chain_2309,blat.proc3829891.chain_2312	4
scaffold_7	alt_acceptor	17803960	17803961	+	asmbl_51379	none	STRG.9615.1,blat.proc3829875.chain_2084	2	STRG.9615.2	1
scaffold_19	spliced_intron	12491455	12492160	+	asmbl_22616,asmbl_22621	none	STRG.22568.2,STRG.22568.6,blat.proc3829881.chain_3535	3	STRG.22568.3,blat.proc3829881.chain_3534	2
scaffold_5	spliced_intron	5039918	5039996	-	asmbl_45412	none	Trinity_GG_20358_c0_g1_i1,blat.proc3829889.chain_2012	2	Trinity_GG_20358_c0_g1_i2,blat.proc3829889.chain_2011	2
scaffold_6	skipped_exon	13189003	13190557	+	asmbl_47423,asmbl_47424	none	STRG.8068.3,blat.proc3829875.chain_432	2	STRG.8068.1,STRG.8068.2,blat.proc3829875.chain_427,blat.proc3829875.chain_428,blat.proc3829875.chain_430	5
scaffold_18	alternate_exon	10928727	10928956	-	asmbl_20148	none	STRG.21647.1,blat.proc3829897.chain_2473	2	STRG.21647.3	1
scaffold_18	spliced_intron	6425016	6425279	+	asmbl_20706,asmbl_20707	none	STRG.21358.1,STRG.21358.2,blat.proc3829881.chain_2320	3	Trinity_GG_11792_c0_g1_i3,blat.proc3829881.chain_2322	2
scaffold_4	starts_in_intron	6281678	6281678	-	asmbl_41414	none	Trinity_GG_19560_c0_g1_i4	1	STRG.4498.1,STRG.4498.2,Trinity_GG_19560_c0_g1_i1,Trinity_GG_19560_c0_g1_i2,Trinity_GG_19560_c0_g1_i3,Trinity_GG_19560_c0_g1_i6,Trinity_GG_19560_c0_g1_i9,blat.proc3829889.chain_662,blat.proc3829889.chain_663,blat.proc3829889.chain_664,blat.proc3829889.chain_665,blat.proc3829889.chain_666,blat.proc3829889.chain_668	13
scaffold_5	starts_in_intron	10853360	10853360	+	asmbl_44374	none	blat.proc3829873.chain_2511	1	STRG.6350.1,STRG.6350.3,blat.proc3829873.chain_2512,blat.proc3829873.chain_2513,blat.proc3829873.chain_2515,blat.proc3829873.chain_2516	6
scaffold_17	retained_intron	8303687	8303849	-	asmbl_19134	none	STRG.20439.2	1	STRG.20439.1,blat.proc3829897.chain_1353,blat.proc3829897.chain_1354	3
scaffold_12	retained_exon	2926610	2926726	-	asmbl_7465	none	STRG.14515.1,blat.proc3829893.chain_2936	2	STRG.14515.5	1
scaffold_13	retained_intron	8353056	8353540	+	asmbl_11113	none	blat.proc3829879.chain_891	1	STRG.16112.3	1
scaffold_3	alternate_exon	2661818	2664421	+	asmbl_39866,asmbl_39867,asmbl_39872	none	STRG.3038.1,STRG.3038.2,blat.proc3829871.chain_3146	3	STRG.3038.3,STRG.3038.4	2
scaffold_6	ends_in_intron	299825	299825	+	asmbl_46601	none	blat.proc3829873.chain_3249	1	STRG.7082.1,STRG.7082.2,STRG.7082.3,STRG.7082.4	4
scaffold_14	spliced_intron	12351303	12351424	+	asmbl_12405	none	STRG.17560.3,blat.proc3829879.chain_2237	2	blat.proc3829879.chain_2236	1
scaffold_13	starts_in_intron	8012736	8012736	+	asmbl_11075	none	STRG.16066.2,blat.proc3829879.chain_765	2	STRG.16066.1,blat.proc3829879.chain_761,blat.proc3829879.chain_762,blat.proc3829879.chain_764	4
scaffold_6	alternate_exon	2847463	2850009	-	asmbl_48119	none	STRG.7274.2	1	STRG.7274.3	1
scaffold_26	retained_exon	9829802	9829918	+	asmbl_35797	none	STRG.28502.1,blat.proc3829885.chain_1546	2	blat.proc3829885.chain_1545	1
scaffold_14	alt_acceptor	10479291	10479292	+	asmbl_12305	none	blat.proc3829879.chain_2091	1	STRG.17382.1,blat.proc3829879.chain_2095	2
scaffold_9	alternate_exon	6988388	6991312	+	asmbl_54105	none	STRG.11201.1,blat.proc3829875.chain_3700,blat.proc3829875.chain_3702	3	STRG.11201.2,blat.proc3829875.chain_3703	2
scaffold_1	alt_donor	5199329	5199330	-	asmbl_246	none	STRG.322.2	1	STRG.322.1,blat.proc3829887.chain_207	2
scaffold_5	retained_intron	2668980	2669850	-	asmbl_45280,asmbl_45285	none	STRG.5790.3,Trinity_GG_20271_c0_g1_i7,blat.proc3829889.chain_1870	3	STRG.5790.1,STRG.5790.2,blat.proc3829889.chain_1871,blat.proc3829889.chain_1872,blat.proc3829889.chain_1875	5
scaffold_15	retained_intron	4753209	4753331	+	asmbl_14112	none	Trinity_GG_9981_c0_g1_i1,blat.proc3829879.chain_2827	2	STRG.18176.1,STRG.18176.2,blat.proc3829879.chain_2825,blat.proc3829879.chain_2826	4
scaffold_8	retained_intron	18162712	18162884	-	asmbl_53522	none	Trinity_GG_22981_c0_g1_i9,blat.proc3829891.chain_2911,blat.proc3829891.chain_2913	3	STRG.10720.1,Trinity_GG_22981_c0_g1_i1,Trinity_GG_22981_c0_g1_i2,Trinity_GG_22981_c0_g1_i6,blat.proc3829891.chain_2907,blat.proc3829891.chain_2908,blat.proc3829891.chain_2909,blat.proc3829891.chain_2912	8
scaffold_1	spliced_intron	4386393	4386813	-	asmbl_188	none	STRG.266.1,blat.proc3829887.chain_146	2	STRG.266.2,Trinity_GG_17151_c0_g1_i1,blat.proc3829887.chain_147	3
scaffold_4	starts_in_intron	6604085	6604085	+	asmbl_42745	none	Trinity_GG_2494_c0_g1_i2,blat.proc3829873.chain_859	2	STRG.4520.1,STRG.4520.2,blat.proc3829873.chain_857,blat.proc3829873.chain_858,blat.proc3829873.chain_860	5
scaffold_14	alternate_exon	11059267	11059357	-	asmbl_13424	none	STRG.17425.1,blat.proc3829895.chain_2091	2	STRG.17425.2	1
scaffold_19	alt_acceptor	12957784	12957785	-	asmbl_21779	none	STRG.22600.1	1	Trinity_GG_29572_c0_g1_i6,Trinity_GG_29572_c0_g1_i7,blat.proc3829897.chain_3292,blat.proc3829897.chain_3295	4
scaffold_12	spliced_intron	10190123	10190194	+	asmbl_8877	none	STRG.14976.2	1	STRG.14976.1	1
scaffold_4	spliced_intron	16481131	16481263	-	asmbl_41933	none	blat.proc3829889.chain_1290	1	STRG.5226.2,Trinity_GG_19942_c0_g2_i1,Trinity_GG_19942_c0_g2_i2,blat.proc3829889.chain_1291,blat.proc3829889.chain_1293,blat.proc3829889.chain_1294	6
scaffold_26	alternate_exon	3941905	3942198	-	asmbl_34788	none	STRG.28066.3,blat.proc3829901.chain_1287	2	STRG.28066.1	1
scaffold_1	spliced_intron	4864390	4864489	-	asmbl_221	none	STRG.287.2,blat.proc3829887.chain_169	2	STRG.287.1,blat.proc3829887.chain_168	2
scaffold_28	alt_donor	7720237	7720238	+	asmbl_38398	none	Trinity_GG_16523_c1_g1_i1,blat.proc3829885.chain_2922	2	STRG.29824.1,Trinity_GG_16523_c1_g1_i2,blat.proc3829885.chain_2923,blat.proc3829885.chain_2926	4
scaffold_24	starts_in_intron	1956924	1956924	-	asmbl_32751	none	blat.proc3829899.chain_3466	1	STRG.26406.1,blat.proc3829899.chain_3465	2
scaffold_13	retained_intron	2570778	2570949	+	asmbl_10607,asmbl_10608,asmbl_10611,asmbl_10613	none	Trinity_GG_8519_c0_g1_i8,blat.proc3829879.chain_188,blat.proc3829879.chain_190,blat.proc3829879.chain_193,blat.proc3829879.chain_194	5	STRG.15550.1,Trinity_GG_8519_c0_g1_i1,Trinity_GG_8519_c0_g1_i3,blat.proc3829879.chain_189,blat.proc3829879.chain_191,blat.proc3829879.chain_192,blat.proc3829879.chain_195	7
scaffold_23	retained_intron	7686045	7687381	+	asmbl_31012	none	Trinity_GG_14406_c0_g1_i5,blat.proc3829883.chain_2976	2	STRG.26063.1,STRG.26063.6,Trinity_GG_14406_c0_g1_i3,Trinity_GG_14406_c0_g1_i6,blat.proc3829883.chain_2977,blat.proc3829883.chain_2981	6
scaffold_13	starts_in_intron	2330858	2330858	+	asmbl_10594	none	blat.proc3829879.chain_169	1	STRG.15543.2,STRG.15543.3,STRG.15543.4,STRG.15543.5,STRG.15543.6,STRG.15543.7,STRG.15543.8,STRG.15543.9,blat.proc3829879.chain_170,blat.proc3829879.chain_173	10
scaffold_10	alt_acceptor	4156848	4156849	-	asmbl_3182,asmbl_3183,asmbl_3184	none	STRG.12242.1,STRG.12242.2,blat.proc3829893.chain_685,blat.proc3829893.chain_686,blat.proc3829893.chain_687	5	STRG.12242.3	1
scaffold_25	retained_exon	2639354	2639653	+	asmbl_33391	none	STRG.27209.1,blat.proc3829885.chain_233	2	blat.proc3829885.chain_234	1
scaffold_15	retained_intron	2990755	2990835	-	asmbl_15076	none	STRG.18069.3,blat.proc3829895.chain_2807	2	STRG.18069.2,blat.proc3829895.chain_2806	2
scaffold_14	alternate_exon	409088	410084	-	asmbl_12811	none	Trinity_GG_26372_c0_g1_i2,blat.proc3829895.chain_1426	2	STRG.16723.1	1
scaffold_11	spliced_intron	8073261	8073486	-	asmbl_6800,asmbl_6801,asmbl_6803,asmbl_6804,asmbl_6805,asmbl_6806,asmbl_6815	none	STRG.13802.1,STRG.13802.2,Trinity_GG_24711_c0_g1_i18,Trinity_GG_24711_c0_g1_i3,blat.proc3829893.chain_2197,blat.proc3829893.chain_2206,blat.proc3829893.chain_2209,blat.proc3829893.chain_2211	8	Trinity_GG_24711_c0_g1_i17,Trinity_GG_24711_c0_g1_i8,blat.proc3829893.chain_2204,blat.proc3829893.chain_2205	4
scaffold_643	starts_in_intron	1634	1634	-	asmbl_49430	none	blat.proc3829901.chain_3439	1	STRG.30389.1	1
scaffold_5	retained_exon	6065159	6065217	+	asmbl_44058,asmbl_44062	none	STRG.6021.2,STRG.6021.3,blat.proc3829873.chain_2217	3	STRG.6021.1,blat.proc3829873.chain_2216	2
scaffold_20	ends_in_intron	2079071	2079071	-	asmbl_26558	none	blat.proc3829897.chain_3694	1	STRG.22932.1,Trinity_GG_29800_c0_g1_i3,blat.proc3829897.chain_3695,blat.proc3829897.chain_3696	4
scaffold_21	alt_acceptor	8283333	8283334	-	asmbl_27933	none	STRG.24352.1,blat.proc3829899.chain_1457	2	STRG.24352.2,blat.proc3829899.chain_1456	2
scaffold_3	retained_exon	13423808	13423923	-	asmbl_39212,asmbl_39215,asmbl_39217	none	STRG.3690.2,STRG.3690.3,STRG.3690.5	3	STRG.3690.4	1
scaffold_10	alt_acceptor	3129132	3129133	-	asmbl_3082	none	STRG.12130.3	1	STRG.12130.1,Trinity_GG_23778_c0_g1_i3,blat.proc3829893.chain_594	3
scaffold_1	ends_in_intron	11412047	11412047	+	asmbl_2090	none	Trinity_GG_464_c1_g1_i2,blat.proc3829871.chain_807	2	STRG.747.1,Trinity_GG_464_c1_g1_i1,blat.proc3829871.chain_808	3
scaffold_28	spliced_intron	2721160	2721312	+	asmbl_38102	none	STRG.29438.2,blat.proc3829885.chain_2563	2	STRG.29438.1,STRG.29438.3,blat.proc3829885.chain_2562,blat.proc3829885.chain_2564,blat.proc3829885.chain_2565	5
scaffold_27	ends_in_intron	6195472	6195472	+	asmbl_36341	none	STRG.28993.2	1	STRG.28993.5	1
scaffold_1	ends_in_intron	4386759	4386759	-	asmbl_189	none	Trinity_GG_17151_c0_g1_i3,blat.proc3829887.chain_148	2	STRG.266.1,blat.proc3829887.chain_146	2
scaffold_6	spliced_intron	3057252	3057331	+	asmbl_46743,asmbl_46744,asmbl_46746,asmbl_46748,asmbl_46750,asmbl_46753	none	STRG.7308.1,STRG.7308.2,blat.proc3829873.chain_3438,blat.proc3829873.chain_3440,blat.proc3829873.chain_3441,blat.proc3829873.chain_3442,blat.proc3829873.chain_3444	7	blat.proc3829873.chain_3445,blat.proc3829873.chain_3446	2
scaffold_19	alt_acceptor	724706	724707	+	asmbl_22004	none	STRG.21851.3	1	STRG.21851.1,STRG.21851.2,STRG.21851.4	3
scaffold_13	starts_in_intron	7451602	7451602	+	asmbl_11039	none	Trinity_GG_8814_c0_g1_i5,blat.proc3829879.chain_755	2	STRG.16024.1,blat.proc3829879.chain_756,blat.proc3829879.chain_757	3
scaffold_20	alternate_exon	8290218	8290834	+	asmbl_25915,asmbl_25917	none	STRG.23362.2,STRG.23362.3,Trinity_GG_12893_c0_g1_i3,blat.proc3829883.chain_461	4	STRG.23362.4,Trinity_GG_12893_c0_g1_i2,blat.proc3829883.chain_458	3
scaffold_4	skipped_exon	4413750	4415344	+	asmbl_42580,asmbl_42590	none	STRG.4344.2,blat.proc3829873.chain_683,blat.proc3829873.chain_685	3	STRG.4344.1,STRG.4344.3,STRG.4344.4,Trinity_GG_2404_c0_g1_i8,blat.proc3829873.chain_682,blat.proc3829873.chain_694,blat.proc3829873.chain_695,blat.proc3829873.chain_697	8
scaffold_21	alt_donor	33515	33516	-	asmbl_27294	none	STRG.23699.2,blat.proc3829899.chain_726	2	STRG.23699.1,blat.proc3829899.chain_724	2
scaffold_7	alt_acceptor	11659533	11659534	+	asmbl_51062	none	STRG.9273.2	1	STRG.9273.1,blat.proc3829875.chain_1680	2
scaffold_14	starts_in_intron	14641521	14641521	+	asmbl_12540	none	Trinity_GG_9733_c0_g1_i1,blat.proc3829879.chain_2379	2	STRG.17708.1,blat.proc3829879.chain_2378	2
scaffold_22	spliced_intron	10005419	10005648	+	asmbl_29627	none	STRG.25327.1,blat.proc3829883.chain_2325	2	STRG.25327.2,Trinity_GG_14016_c1_g1_i1,blat.proc3829883.chain_2326	3
scaffold_16	ends_in_intron	7241238	7241238	-	asmbl_16354	none	STRG.19382.9	1	STRG.19382.6	1
scaffold_2	spliced_intron	7923087	7923870	-	asmbl_23316,asmbl_23318,asmbl_23319,asmbl_23320	none	STRG.2092.1,STRG.2092.2,blat.proc3829887.chain_2033,blat.proc3829887.chain_2034,blat.proc3829887.chain_2036	5	blat.proc3829887.chain_2032	1
scaffold_16	retained_intron	1236351	1236851	-	asmbl_16102	none	blat.proc3829897.chain_126	1	STRG.19075.1,blat.proc3829897.chain_127,blat.proc3829897.chain_128	3
scaffold_27	retained_intron	1026348	1026649	-	asmbl_36691	none	blat.proc3829901.chain_1730	1	STRG.28589.1,STRG.28589.2,STRG.28589.3,blat.proc3829901.chain_1729	4
scaffold_3	starts_in_intron	5006010	5006010	+	asmbl_40011	none	Trinity_GG_1799_c0_g2_i4,blat.proc3829871.chain_3362	2	STRG.3199.1,STRG.3199.2	2
scaffold_16	alt_donor	3870486	3870487	-	asmbl_16179	none	STRG.19184.2,blat.proc3829897.chain_216	2	STRG.19184.1,blat.proc3829897.chain_217	2
scaffold_5	starts_in_intron	18264478	18264478	+	asmbl_44898	none	blat.proc3829873.chain_3106	1	STRG.6959.1,STRG.6959.2,Trinity_GG_3828_c0_g1_i3,blat.proc3829873.chain_3103,blat.proc3829873.chain_3104,blat.proc3829873.chain_3105,blat.proc3829873.chain_3107,blat.proc3829873.chain_3109	8
scaffold_16	starts_in_intron	148095	148095	-	asmbl_16003	none	Trinity_GG_27691_c1_g1_i1,blat.proc3829897.chain_71	2	STRG.19000.1,Trinity_GG_27691_c0_g1_i3,Trinity_GG_27691_c0_g1_i4,Trinity_GG_27691_c0_g1_i7,Trinity_GG_27691_c0_g1_i8,blat.proc3829897.chain_66,blat.proc3829897.chain_69	7
scaffold_43	spliced_intron	547	687	-	asmbl_43670,asmbl_43671,asmbl_43672,asmbl_43673	none	STRG.30025.1,STRG.30025.2,STRG.30025.3,STRG.30025.4	4	STRG.30025.5	1
scaffold_3	retained_intron	6659645	6660509	+	asmbl_40060	none	STRG.3290.3,Trinity_GG_1861_c0_g1_i1,Trinity_GG_1861_c0_g1_i4,blat.proc3829871.chain_3462,blat.proc3829871.chain_3463	5	STRG.3290.4,STRG.3290.5,blat.proc3829871.chain_3459,blat.proc3829871.chain_3468	4
scaffold_26	alt_donor	1322185	1322186	-	asmbl_34678	none	blat.proc3829901.chain_1142	1	STRG.27898.1,STRG.27898.4	2
scaffold_24	retained_intron	5951108	5951617	+	asmbl_32270	none	blat.proc3829883.chain_3543	1	STRG.26645.1,blat.proc3829883.chain_3537,blat.proc3829883.chain_3541,blat.proc3829883.chain_3545	4
scaffold_11	ends_in_intron	205369	205369	-	asmbl_6354	none	Trinity_GG_24418_c0_g1_i3,blat.proc3829893.chain_1693	2	STRG.13242.1,STRG.13242.2,blat.proc3829893.chain_1692	3
scaffold_4	spliced_intron	17471150	17471253	-	asmbl_42017	none	STRG.5333.2,Trinity_GG_19954_c0_g1_i1,blat.proc3829889.chain_1321	3	STRG.5333.1,Trinity_GG_19954_c0_g1_i2,blat.proc3829889.chain_1322	3
scaffold_8	alt_donor	10008484	10008485	+	asmbl_52127	none	STRG.10249.3	1	STRG.10249.2	1
scaffold_19	retained_intron	9521510	9521794	+	asmbl_22409	none	STRG.22371.1,blat.proc3829897.chain_3095	2	STRG.22371.2	1
scaffold_8	skipped_exon	13143912	13145374	-	asmbl_53281,asmbl_53282	none	blat.proc3829891.chain_2629,blat.proc3829891.chain_2630	2	blat.proc3829891.chain_2628,blat.proc3829891.chain_2631	2
scaffold_3	retained_intron	4275917	4276088	+	asmbl_39950	none	STRG.3122.2,blat.proc3829871.chain_3230	2	STRG.3122.1,blat.proc3829871.chain_3229	2
scaffold_4	retained_intron	12571369	12571452	-	asmbl_41676	none	blat.proc3829889.chain_967	1	STRG.4898.1,blat.proc3829889.chain_965	2
scaffold_14	starts_in_intron	15568421	15568421	+	asmbl_12605	none	Trinity_GG_9779_c0_g1_i1,blat.proc3829879.chain_2463	2	STRG.17784.1,STRG.17784.2,STRG.17784.3	3
scaffold_8	spliced_intron	10059073	10059152	-	asmbl_53093,asmbl_53094	none	STRG.10258.1,STRG.10258.2,blat.proc3829891.chain_2380,blat.proc3829891.chain_2381	4	blat.proc3829891.chain_2382	1
scaffold_4	starts_in_intron	14115610	14115610	-	asmbl_41777	none	blat.proc3829889.chain_998	1	STRG.5030.1,blat.proc3829889.chain_997	2
scaffold_5	retained_intron	18696880	18697441	-	asmbl_46229,asmbl_46232	none	STRG.6987.1,blat.proc3829889.chain_2983	2	blat.proc3829889.chain_2984	1
scaffold_3	retained_intron	19029164	19029934	-	asmbl_39584	none	blat.proc3829889.chain_120	1	blat.proc3829889.chain_121	1
scaffold_3	retained_intron	10756104	10756206	+	asmbl_40247	none	STRG.3507.2,blat.proc3829871.chain_3671	2	STRG.3507.1,blat.proc3829871.chain_3669,blat.proc3829871.chain_3670	3
scaffold_10	alternate_exon	12697505	12697635	-	asmbl_3721	none	STRG.12849.1,blat.proc3829893.chain_1348	2	STRG.12849.2,blat.proc3829893.chain_1349	2
scaffold_3	alt_donor	11455046	11455047	-	asmbl_39121	none	STRG.3579.2,blat.proc3829887.chain_3344	2	blat.proc3829887.chain_3343	1
scaffold_11	ends_in_intron	11340687	11340687	+	asmbl_5937	none	Trinity_GG_7772_c0_g1_i1,blat.proc3829877.chain_2585	2	STRG.14070.1,STRG.14070.2,blat.proc3829877.chain_2584	3
scaffold_13	starts_in_intron	12459807	12459807	-	asmbl_10101	none	STRG.16359.1	1	STRG.16359.2	1
scaffold_2	alt_acceptor	888310	888311	+	asmbl_24146,asmbl_24147,asmbl_24149	none	STRG.1564.1,STRG.1564.3,Trinity_GG_856_c1_g1_i3,blat.proc3829871.chain_1552	4	STRG.1564.2,STRG.1564.5,Trinity_GG_856_c1_g1_i1,blat.proc3829871.chain_1551	4
scaffold_26	alt_acceptor	3432915	3432916	+	asmbl_35311	none	blat.proc3829885.chain_902	1	STRG.28008.1,blat.proc3829885.chain_900,blat.proc3829885.chain_901,blat.proc3829885.chain_903	4
scaffold_4	alt_donor	4103343	4103344	+	asmbl_42559	none	blat.proc3829873.chain_662	1	STRG.4315.1	1
scaffold_1	ends_in_intron	4575202	4575202	-	asmbl_207	none	blat.proc3829887.chain_140	1	STRG.277.1,blat.proc3829887.chain_133,blat.proc3829887.chain_135,blat.proc3829887.chain_137	4
scaffold_5	alt_donor	8082100	8082101	+	asmbl_44188	none	STRG.6160.1	1	STRG.6160.2	1
scaffold_3	skipped_exon	8253370	8255934	+	asmbl_40166	none	STRG.3399.2	1	STRG.3399.1,Trinity_GG_1923_c0_g1_i2,blat.proc3829871.chain_3568	3
scaffold_14	alt_acceptor	13601369	13601370	+	asmbl_12469,asmbl_12470	none	STRG.17629.1,STRG.17629.2	2	blat.proc3829879.chain_2306,blat.proc3829879.chain_2307	2
scaffold_4	retained_intron	4121525	4121687	-	asmbl_41234,asmbl_41236	none	STRG.4323.2,Trinity_GG_19456_c0_g1_i2,Trinity_GG_19456_c0_g1_i5,blat.proc3829889.chain_474,blat.proc3829889.chain_475	5	STRG.4323.1,blat.proc3829889.chain_476	2
scaffold_17	alternate_exon	8885702	8888498	+	asmbl_18170	none	STRG.20500.1,Trinity_GG_11210_c1_g1_i1,blat.proc3829881.chain_1244,blat.proc3829881.chain_1246	4	STRG.20500.2,Trinity_GG_11210_c0_g1_i2,blat.proc3829881.chain_1245	3
scaffold_20	alternate_exon	10695919	10696154	+	asmbl_26137	none	STRG.23588.2,blat.proc3829883.chain_710	2	STRG.23588.1,STRG.23588.3,blat.proc3829883.chain_711	3
scaffold_19	ends_in_intron	8224491	8224491	-	asmbl_21495	none	blat.proc3829897.chain_3000	1	STRG.22262.1,blat.proc3829897.chain_2999	2
scaffold_12	alt_donor	4214625	4214626	+	asmbl_8548,asmbl_8550	none	STRG.14588.1,blat.proc3829877.chain_3115,blat.proc3829877.chain_3117	3	STRG.14588.2,STRG.14588.3	2
scaffold_17	retained_intron	8626956	8627047	+	asmbl_18138	none	Trinity_GG_11185_c0_g1_i1,blat.proc3829881.chain_1209	2	STRG.20466.1,Trinity_GG_11185_c0_g1_i3,blat.proc3829881.chain_1210	3
scaffold_26	alt_donor	8362550	8362551	+	asmbl_35695	none	STRG.28410.1	1	STRG.28410.2,Trinity_GG_15730_c0_g1_i1,blat.proc3829885.chain_1462	3
scaffold_18	retained_intron	206330	206510	+	asmbl_20301	none	Trinity_GG_11543_c0_g1_i1,blat.proc3829881.chain_1838	2	STRG.20965.2,Trinity_GG_11543_c0_g1_i6,blat.proc3829881.chain_1837	3
scaffold_24	retained_exon	9937796	9937873	-	asmbl_33143	none	blat.proc3829901.chain_255	1	STRG.26950.2	1
scaffold_10	ends_in_intron	6018576	6018576	-	asmbl_3337	none	blat.proc3829893.chain_894	1	STRG.12424.1,blat.proc3829893.chain_896	2
scaffold_8	spliced_intron	12693269	12693431	+	asmbl_52317,asmbl_52318,asmbl_52322	none	blat.proc3829875.chain_2945,blat.proc3829875.chain_2946,blat.proc3829875.chain_2948	3	blat.proc3829875.chain_2944,blat.proc3829875.chain_2947	2
scaffold_22	skipped_exon	6130130	6131156	+	asmbl_29397,asmbl_29398	none	STRG.24955.7,blat.proc3829883.chain_2007	2	STRG.24955.3,blat.proc3829883.chain_2009,blat.proc3829883.chain_2010	3
scaffold_13	alternate_exon	6048623	6050994	-	asmbl_9728	none	STRG.15900.2,blat.proc3829895.chain_630	2	STRG.15900.3,Trinity_GG_25933_c1_g1_i1,blat.proc3829895.chain_627,blat.proc3829895.chain_633	4
scaffold_12	retained_intron	14123813	14123946	-	asmbl_8117,asmbl_8118,asmbl_8121	none	STRG.15232.2,Trinity_GG_25557_c0_g1_i2,blat.proc3829893.chain_3706	3	STRG.15232.1,blat.proc3829893.chain_3707,blat.proc3829893.chain_3709	3
scaffold_3	starts_in_intron	14481035	14481035	+	asmbl_40492	none	Trinity_GG_2129_c0_g1_i3,blat.proc3829873.chain_200	2	STRG.3787.1,STRG.3787.2,Trinity_GG_2129_c0_g1_i2,blat.proc3829873.chain_201,blat.proc3829873.chain_203	5
scaffold_24	spliced_intron	1064662	1064849	+	asmbl_32073,asmbl_32074	none	STRG.26360.4,STRG.26360.5,blat.proc3829883.chain_3295	3	STRG.26360.1,Trinity_GG_14583_c0_g1_i1,Trinity_GG_14583_c0_g1_i4,blat.proc3829883.chain_3294,blat.proc3829883.chain_3296	5
scaffold_5	retained_intron	2234854	2234891	-	asmbl_45267	none	STRG.5750.1,blat.proc3829889.chain_1845	2	blat.proc3829889.chain_1846	1
scaffold_21	retained_intron	254930	255185	-	asmbl_27312,asmbl_27317,asmbl_27322	none	STRG.23718.7,Trinity_GG_30232_c0_g1_i2,blat.proc3829899.chain_784,blat.proc3829899.chain_789,blat.proc3829899.chain_791,blat.proc3829899.chain_794	6	STRG.23718.3,STRG.23718.4,STRG.23718.5,STRG.23718.6,STRG.23718.8,blat.proc3829899.chain_781,blat.proc3829899.chain_782,blat.proc3829899.chain_786,blat.proc3829899.chain_788,blat.proc3829899.chain_792	10
scaffold_2	skipped_exon	9140005	9140289	-	asmbl_23372,asmbl_23373	none	STRG.2160.1,STRG.2160.2	2	blat.proc3829887.chain_2071,blat.proc3829887.chain_2072	2
scaffold_10	skipped_exon	7270639	7271459	+	asmbl_4550	none	STRG.12531.2,blat.proc3829877.chain_1103	2	STRG.12531.1,blat.proc3829877.chain_1100,blat.proc3829877.chain_1102,blat.proc3829877.chain_1105	4
scaffold_10	retained_intron	7282966	7283052	-	asmbl_3459	none	blat.proc3829893.chain_957	1	STRG.12535.1,STRG.12535.2,Trinity_GG_23983_c0_g1_i1,blat.proc3829893.chain_958,blat.proc3829893.chain_959	5
scaffold_26	retained_intron	5294667	5294755	+	asmbl_35501	none	blat.proc3829885.chain_1181	1	STRG.28216.1,Trinity_GG_15565_c0_g1_i3,blat.proc3829885.chain_1180	3
scaffold_28	alt_acceptor	4205173	4205174	+	asmbl_38213,asmbl_38214	none	STRG.29593.4,STRG.29593.5,blat.proc3829885.chain_2724	3	STRG.29593.1	1
scaffold_27	ends_in_intron	3023102	3023102	+	asmbl_36127	none	blat.proc3829885.chain_1778	1	STRG.28769.1,STRG.28769.2,blat.proc3829885.chain_1777,blat.proc3829885.chain_1779,blat.proc3829885.chain_1780,blat.proc3829885.chain_1782	6
scaffold_13	retained_intron	8952103	8952193	-	asmbl_9961	none	blat.proc3829895.chain_932	1	STRG.16152.1,blat.proc3829895.chain_931,blat.proc3829895.chain_933	3
scaffold_5	skipped_exon	10183015	10183671	-	asmbl_45700	none	STRG.6308.1	1	blat.proc3829889.chain_2400	1
scaffold_13	spliced_intron	6686158	6686374	+	asmbl_10947	none	STRG.15941.1,Trinity_GG_8757_c0_g1_i1,blat.proc3829879.chain_626	3	blat.proc3829879.chain_625	1
scaffold_11	spliced_intron	11943939	11944171	-	asmbl_7019,asmbl_7021,asmbl_7022,asmbl_7023,asmbl_7029	none	STRG.14160.2,STRG.14160.3,STRG.14160.4,STRG.14160.5,STRG.14160.6,blat.proc3829893.chain_2558	6	Trinity_GG_24916_c1_g1_i1,blat.proc3829893.chain_2566	2
scaffold_21	alternate_exon	4256439	4257124	-	asmbl_27598	none	STRG.23990.2	1	STRG.23990.1,blat.proc3829899.chain_1049	2
scaffold_3	retained_intron	7927018	7927366	+	asmbl_40143	none	STRG.3376.2	1	STRG.3376.3	1
scaffold_2	ends_in_intron	17974145	17974145	+	asmbl_25243	none	blat.proc3829871.chain_2900	1	STRG.2687.1,STRG.2687.2,blat.proc3829871.chain_2901,blat.proc3829871.chain_2902,blat.proc3829871.chain_2903	5
scaffold_1	starts_in_intron	14623877	14623877	+	asmbl_2388,asmbl_2389	none	STRG.1062.2,blat.proc3829871.chain_1096	2	STRG.1062.1,blat.proc3829871.chain_1097	2
scaffold_2	starts_in_intron	892229	892229	+	asmbl_24163	none	blat.proc3829871.chain_1634	1	STRG.1565.2,STRG.1565.3,blat.proc3829871.chain_1632,blat.proc3829871.chain_1636	4
scaffold_26	alternate_exon	9313971	9314112	+	asmbl_35739	none	STRG.28479.3,blat.proc3829885.chain_1519	2	STRG.28479.1,STRG.28479.2,blat.proc3829885.chain_1513,blat.proc3829885.chain_1514	4
scaffold_2	retained_intron	11668002	11668168	+	asmbl_24802	none	blat.proc3829871.chain_2382	1	STRG.2278.1,blat.proc3829871.chain_2384	2
scaffold_27	alt_donor	9329763	9329764	-	asmbl_37083,asmbl_37084,asmbl_37086	none	STRG.29165.1,STRG.29165.2,blat.proc3829901.chain_2279,blat.proc3829901.chain_2280	4	blat.proc3829901.chain_2278	1
scaffold_21	alt_acceptor	6611635	6611636	-	asmbl_27764	none	STRG.24172.2	1	STRG.24172.1,blat.proc3829899.chain_1207	2
scaffold_15	spliced_intron	2467971	2467990	-	asmbl_15019	none	STRG.18008.1	1	Trinity_GG_27137_c0_g1_i1	1
scaffold_26	spliced_intron	902781	902905	+	asmbl_35238,asmbl_35240	none	STRG.27880.1,Trinity_GG_15392_c0_g1_i1,blat.proc3829885.chain_886,blat.proc3829885.chain_888	4	STRG.27880.2,Trinity_GG_15392_c0_g1_i2,blat.proc3829885.chain_889	3
scaffold_2	spliced_intron	14190516	14191409	-	asmbl_23581,asmbl_23582,asmbl_23583,asmbl_23584,asmbl_23585	none	STRG.2417.2,blat.proc3829887.chain_2207,blat.proc3829887.chain_2208,blat.proc3829887.chain_2209,blat.proc3829887.chain_2210	5	STRG.2417.1,Trinity_GG_18310_c0_g1_i1,blat.proc3829887.chain_2211,blat.proc3829887.chain_2212	4
scaffold_26	spliced_intron	5561589	5561755	+	asmbl_35551	none	STRG.28249.1,blat.proc3829885.chain_1211	2	STRG.28249.2,Trinity_GG_15578_c2_g1_i1,blat.proc3829885.chain_1209	3
scaffold_8	retained_intron	9466234	9466322	-	asmbl_53032,asmbl_53036,asmbl_53037	none	Trinity_GG_22724_c0_g1_i7,blat.proc3829891.chain_2400,blat.proc3829891.chain_2408	3	STRG.10197.1,blat.proc3829891.chain_2403,blat.proc3829891.chain_2405,blat.proc3829891.chain_2406,blat.proc3829891.chain_2407	5
scaffold_6	alt_acceptor	12972143	12972144	+	asmbl_47395,asmbl_47397,asmbl_47398	none	STRG.8050.1,STRG.8050.3,blat.proc3829875.chain_459,blat.proc3829875.chain_460,blat.proc3829875.chain_461	5	STRG.8050.2,blat.proc3829875.chain_462	2
scaffold_23	spliced_intron	10977476	10977635	+	asmbl_31186,asmbl_31189,asmbl_31191,asmbl_31194,asmbl_31195,asmbl_31196	none	STRG.26281.1,Trinity_GG_14524_c0_g1_i13,Trinity_GG_14524_c0_g1_i8,blat.proc3829883.chain_3193,blat.proc3829883.chain_3194,blat.proc3829883.chain_3195,blat.proc3829883.chain_3199,blat.proc3829883.chain_3200,blat.proc3829883.chain_3203	9	STRG.26281.2,Trinity_GG_14524_c0_g1_i12,Trinity_GG_14524_c0_g1_i9,blat.proc3829883.chain_3192,blat.proc3829883.chain_3197,blat.proc3829883.chain_3201	6
scaffold_4	alt_acceptor	19017909	19017910	-	asmbl_42146	none	STRG.5483.2	1	STRG.5483.3	1
scaffold_12	spliced_intron	7422321	7422559	-	asmbl_7712,asmbl_7715	none	STRG.14807.1,blat.proc3829893.chain_3198,blat.proc3829893.chain_3200	3	blat.proc3829893.chain_3201	1
scaffold_1	alternate_exon	849738	850047	+	asmbl_1414,asmbl_1416	none	STRG.41.2,STRG.41.5,Trinity_GG_29_c0_g1_i1,Trinity_GG_29_c0_g1_i3,blat.proc3829871.chain_50,blat.proc3829871.chain_51	6	STRG.41.3	1
scaffold_14	starts_in_intron	7485018	7485018	-	asmbl_13200	none	STRG.17175.1,Trinity_GG_26631_c0_g1_i2,blat.proc3829895.chain_1861	3	STRG.17175.2,Trinity_GG_26631_c0_g1_i1,blat.proc3829895.chain_1862	3
scaffold_9	spliced_intron	571057	571248	+	asmbl_53750	none	STRG.10779.3	1	STRG.10779.7	1
scaffold_3	starts_in_intron	13701291	13701291	+	asmbl_40407,asmbl_40408	none	STRG.3712.3,STRG.3712.4,Trinity_GG_2088_c1_g1_i1,blat.proc3829873.chain_135	4	STRG.3712.1,STRG.3712.2,blat.proc3829873.chain_129,blat.proc3829873.chain_130	4
scaffold_1	spliced_intron	12450440	12450569	+	asmbl_2204,asmbl_2208	none	STRG.856.5,Trinity_GG_494_c0_g1_i3,blat.proc3829871.chain_887	3	Trinity_GG_494_c0_g1_i4,blat.proc3829871.chain_885	2
scaffold_11	alternate_exon	7749398	7749485	+	asmbl_5644	none	STRG.13769.1,Trinity_GG_7575_c0_g1_i1,blat.proc3829877.chain_2237	3	STRG.13769.2	1
scaffold_1	starts_in_intron	4601904	4601904	+	asmbl_1677	none	Trinity_GG_136_c0_g1_i1,blat.proc3829871.chain_243	2	STRG.282.1,blat.proc3829871.chain_244	2
scaffold_6	retained_intron	10916944	10917091	+	asmbl_47248	none	Trinity_GG_4305_c0_g1_i6,blat.proc3829875.chain_228	2	STRG.7900.4,blat.proc3829875.chain_227	2
scaffold_2	spliced_intron	9322568	9323761	-	asmbl_23400	none	STRG.2176.2	1	STRG.2176.3	1
scaffold_5	starts_in_intron	2572276	2572276	+	asmbl_43850	none	Trinity_GG_3171_c0_g1_i2	1	STRG.5773.1,blat.proc3829873.chain_1963	2
scaffold_10	spliced_intron	2787857	2787930	-	asmbl_3046,asmbl_3048	none	STRG.12096.1,Trinity_GG_23730_c0_g1_i4,Trinity_GG_23730_c0_g1_i5,blat.proc3829893.chain_515,blat.proc3829893.chain_516,blat.proc3829893.chain_517,blat.proc3829893.chain_519	7	STRG.12096.2,Trinity_GG_23730_c0_g1_i2,blat.proc3829893.chain_518	3
scaffold_13	alternate_exon	408348	408541	-	asmbl_9307,asmbl_9313	none	Trinity_GG_25691_c0_g1_i25,Trinity_GG_25691_c0_g1_i8,blat.proc3829895.chain_223,blat.proc3829895.chain_226	4	STRG.15428.1,STRG.15428.3,Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i7,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_220,blat.proc3829895.chain_221,blat.proc3829895.chain_222,blat.proc3829895.chain_224,blat.proc3829895.chain_229,blat.proc3829895.chain_230,blat.proc3829895.chain_232,blat.proc3829895.chain_233	16
scaffold_17	spliced_intron	13957425	13957742	+	asmbl_18485	none	STRG.20860.1,Trinity_GG_11466_c0_g1_i1,Trinity_GG_11466_c0_g1_i3,blat.proc3829881.chain_1706,blat.proc3829881.chain_1707	5	Trinity_GG_11466_c0_g1_i2,blat.proc3829881.chain_1708	2
scaffold_17	starts_in_intron	9530310	9530310	+	asmbl_18228	none	STRG.20566.3,blat.proc3829881.chain_1347,blat.proc3829881.chain_1348	3	STRG.20566.1,STRG.20566.2,Trinity_GG_11250_c0_g1_i1,Trinity_GG_11250_c0_g1_i3,Trinity_GG_11250_c0_g1_i4,Trinity_GG_11250_c0_g1_i7,blat.proc3829881.chain_1349,blat.proc3829881.chain_1350,blat.proc3829881.chain_1351,blat.proc3829881.chain_1352,blat.proc3829881.chain_1353,blat.proc3829881.chain_1354,blat.proc3829881.chain_1355	13
scaffold_17	alternate_exon	682831	683184	-	asmbl_18689	none	STRG.19908.2	1	STRG.19908.1,blat.proc3829897.chain_875,blat.proc3829897.chain_876	3
scaffold_26	starts_in_intron	430590	430590	+	asmbl_35210	none	Trinity_GG_15373_c0_g2_i1,blat.proc3829885.chain_856	2	STRG.27850.1,blat.proc3829885.chain_854	2
scaffold_21	alt_acceptor	9925390	9925391	-	asmbl_28011,asmbl_28015	none	STRG.24446.1,STRG.24446.4,blat.proc3829899.chain_1513	3	STRG.24446.6	1
scaffold_1	alternate_exon	14075901	14076046	+	asmbl_2314	none	Trinity_GG_614_c0_g1_i4,blat.proc3829871.chain_1102	2	STRG.999.2,blat.proc3829871.chain_1101,blat.proc3829871.chain_1103	3
scaffold_18	alt_acceptor	8912486	8912487	-	asmbl_20081	none	STRG.21550.2	1	blat.proc3829897.chain_2394	1
scaffold_8	spliced_intron	9467898	9467974	-	asmbl_53030,asmbl_53032,asmbl_53033,asmbl_53034,asmbl_53035,asmbl_53036	none	STRG.10197.1,blat.proc3829891.chain_2400,blat.proc3829891.chain_2403,blat.proc3829891.chain_2405,blat.proc3829891.chain_2406,blat.proc3829891.chain_2407,blat.proc3829891.chain_2408	7	Trinity_GG_22724_c0_g1_i12,blat.proc3829891.chain_2401	2
scaffold_4	retained_intron	306262	306547	-	asmbl_41067	none	STRG.4128.2,Trinity_GG_19280_c0_g1_i1,blat.proc3829889.chain_173	3	STRG.4128.3,Trinity_GG_19280_c0_g2_i1,blat.proc3829889.chain_175	3
scaffold_26	alt_acceptor	1321986	1321987	-	asmbl_34676,asmbl_34679	none	STRG.27898.2,STRG.27898.3,blat.proc3829901.chain_1144	3	blat.proc3829901.chain_1142	1
scaffold_18	alt_donor	13802567	13802568	+	asmbl_21058	none	blat.proc3829881.chain_2762	1	STRG.21804.1,STRG.21804.2,Trinity_GG_12056_c2_g1_i2,blat.proc3829881.chain_2763	4
scaffold_1	starts_in_intron	14422410	14422410	-	asmbl_925	none	blat.proc3829887.chain_937	1	STRG.1038.1,STRG.1038.2	2
scaffold_7	starts_in_intron	7612355	7612355	-	asmbl_49768	none	blat.proc3829891.chain_1279	1	STRG.9004.1,STRG.9004.2,STRG.9004.3,STRG.9004.4,blat.proc3829891.chain_1278,blat.proc3829891.chain_1280	6
scaffold_12	alternate_exon	12305175	12305317	-	asmbl_7999	none	STRG.15116.1	1	STRG.15116.2	1
scaffold_9	alt_acceptor	75689	75690	-	asmbl_54771	none	STRG.10759.2	1	STRG.10759.1,blat.proc3829891.chain_2966	2
scaffold_8	starts_in_intron	4226915	4226915	-	asmbl_52756	none	blat.proc3829891.chain_1992	1	STRG.9890.1,blat.proc3829891.chain_1993	2
scaffold_27	starts_in_intron	2842600	2842600	+	asmbl_36091	none	Trinity_GG_15909_c0_g1_i5,blat.proc3829885.chain_1807	2	STRG.28746.1,blat.proc3829885.chain_1805	2
scaffold_7	spliced_intron	12388225	12388322	-	asmbl_50013,asmbl_50015,asmbl_50016,asmbl_50017,asmbl_50018,asmbl_50019,asmbl_50020	none	STRG.9328.1,blat.proc3829891.chain_1531,blat.proc3829891.chain_1532,blat.proc3829891.chain_1533,blat.proc3829891.chain_1534,blat.proc3829891.chain_1535,blat.proc3829891.chain_1536,blat.proc3829891.chain_1538	8	blat.proc3829891.chain_1537	1
scaffold_28	starts_in_intron	666507	666507	-	asmbl_37248	none	blat.proc3829901.chain_2349	1	STRG.29266.1,blat.proc3829901.chain_2350	2
scaffold_15	ends_in_intron	9685818	9685818	-	asmbl_15423	none	Trinity_GG_27354_c0_g1_i4,blat.proc3829895.chain_3146	2	STRG.18475.1,blat.proc3829895.chain_3147	2
scaffold_22	ends_in_intron	10770602	10770602	-	asmbl_30393	none	Trinity_GG_31229_c0_g1_i1	1	STRG.25400.1,Trinity_GG_31229_c0_g1_i2	2
scaffold_8	spliced_intron	7985872	7986129	-	asmbl_52931,asmbl_52933	none	STRG.10092.1,Trinity_GG_22656_c0_g1_i5,Trinity_GG_22656_c0_g1_i6,blat.proc3829891.chain_2264,blat.proc3829891.chain_2265	5	STRG.10092.2,blat.proc3829891.chain_2261,blat.proc3829891.chain_2262,blat.proc3829891.chain_2263	4
scaffold_18	retained_intron	4574673	4575183	+	asmbl_20561	none	blat.proc3829881.chain_2151	1	STRG.21237.1,STRG.21237.2,blat.proc3829881.chain_2149,blat.proc3829881.chain_2152,blat.proc3829881.chain_2153,blat.proc3829881.chain_2154	6
scaffold_3	ends_in_intron	7216974	7216974	-	asmbl_38908	none	Trinity_GG_18809_c0_g3_i1,blat.proc3829887.chain_3086	2	STRG.3322.1,STRG.3322.2,blat.proc3829887.chain_3084,blat.proc3829887.chain_3085	4
scaffold_15	spliced_intron	14322902	14323125	-	asmbl_15728	none	blat.proc3829895.chain_3603	1	STRG.18855.3,Trinity_GG_27599_c0_g1_i11	2
scaffold_11	alternate_exon	3091689	3092261	+	asmbl_5359	none	STRG.13419.2,blat.proc3829877.chain_1889	2	STRG.13419.3	1
scaffold_10	ends_in_intron	10414546	10414546	+	asmbl_4692	none	STRG.12717.2,blat.proc3829877.chain_1264	2	STRG.12717.1,blat.proc3829877.chain_1263	2
scaffold_4	retained_intron	15689788	15689823	-	asmbl_41865	none	STRG.5157.2	1	STRG.5157.1	1
scaffold_16	starts_in_intron	10972162	10972162	-	asmbl_16498	none	blat.proc3829897.chain_539	1	STRG.19633.1,STRG.19633.2,blat.proc3829897.chain_538,blat.proc3829897.chain_540,blat.proc3829897.chain_541	5
scaffold_2	alternate_exon	8055586	8055818	-	asmbl_23324	none	STRG.2095.1,blat.proc3829887.chain_2008	2	STRG.2095.3,Trinity_GG_18188_c1_g1_i1	2
scaffold_1	starts_in_intron	5139803	5139803	+	asmbl_1699	none	blat.proc3829871.chain_379	1	STRG.317.1,STRG.317.2,blat.proc3829871.chain_381	3
scaffold_15	ends_in_intron	2013383	2013383	-	asmbl_14995	none	blat.proc3829895.chain_2684	1	STRG.17980.1,blat.proc3829895.chain_2685	2
scaffold_5	alt_acceptor	10539169	10539170	-	asmbl_45748,asmbl_45751	none	STRG.6329.3,STRG.6329.4,blat.proc3829889.chain_2428	3	STRG.6329.1,Trinity_GG_20579_c0_g1_i4,Trinity_GG_20579_c0_g1_i7,blat.proc3829889.chain_2425,blat.proc3829889.chain_2427	5
scaffold_24	spliced_intron	3655845	3656569	+	asmbl_32164	none	STRG.26528.4,Trinity_GG_14654_c0_g1_i3,blat.proc3829883.chain_3406	3	STRG.26528.5,Trinity_GG_14654_c0_g1_i1,blat.proc3829883.chain_3409	3
scaffold_24	retained_exon	4281153	4281195	+	asmbl_32191	none	STRG.26568.2,blat.proc3829883.chain_3465	2	STRG.26568.3	1
scaffold_9	starts_in_intron	8963725	8963725	+	asmbl_54176	none	Trinity_GG_6290_c0_g1_i1,blat.proc3829877.chain_33	2	STRG.11274.1,Trinity_GG_6290_c0_g1_i3,blat.proc3829877.chain_32	3
scaffold_5	alternate_exon	1097268	1097291	-	asmbl_45213	none	blat.proc3829889.chain_1801	1	STRG.5657.1	1
scaffold_23	skipped_exon	7511956	7514060	-	asmbl_31750	none	STRG.26043.3,blat.proc3829899.chain_3152	2	STRG.26043.1,STRG.26043.2,blat.proc3829899.chain_3151	3
scaffold_20	alt_donor	11151201	11151202	-	asmbl_27067	none	STRG.23626.2,Trinity_GG_30166_c0_g1_i1,blat.proc3829899.chain_612	3	STRG.23626.1,Trinity_GG_30166_c0_g1_i2,blat.proc3829899.chain_611	3
scaffold_24	alt_acceptor	10089397	10089398	+	asmbl_32540	none	STRG.26956.2	1	blat.proc3829901.chain_242	1
scaffold_19	retained_intron	12972587	12973050	-	asmbl_21784	none	STRG.22606.3,Trinity_GG_29578_c0_g1_i5,blat.proc3829897.chain_3321	3	STRG.22606.1,STRG.22606.4,Trinity_GG_29578_c0_g1_i2,Trinity_GG_29578_c0_g1_i4,Trinity_GG_29578_c0_g1_i8,blat.proc3829897.chain_3320,blat.proc3829897.chain_3323,blat.proc3829897.chain_3324	8
scaffold_5	retained_exon	15683095	15683232	+	asmbl_44667,asmbl_44671	none	STRG.6754.1,blat.proc3829873.chain_2839,blat.proc3829873.chain_2840	3	blat.proc3829873.chain_2842	1
scaffold_3	retained_exon	18154875	18156395	-	asmbl_39542	none	STRG.4023.2,blat.proc3829889.chain_96	2	STRG.4023.3,STRG.4023.4	2
scaffold_10	alt_donor	14699362	14699363	+	asmbl_4927,asmbl_4928,asmbl_4930	none	STRG.13011.1,STRG.13011.2,blat.proc3829877.chain_1497,blat.proc3829877.chain_1498,blat.proc3829877.chain_1500	5	blat.proc3829877.chain_1501	1
scaffold_8	starts_in_intron	1832072	1832072	+	asmbl_51701	none	blat.proc3829875.chain_2264	1	blat.proc3829875.chain_2265	1
scaffold_12	alternate_exon	16438557	16438733	+	asmbl_9149	none	blat.proc3829879.chain_58	1	STRG.15389.1	1
scaffold_3	retained_intron	13423924	13424513	-	asmbl_39213	none	STRG.3690.1	1	STRG.3690.2	1
scaffold_21	retained_intron	457511	457733	-	asmbl_27351	none	Trinity_GG_30227_c0_g1_i3,blat.proc3829899.chain_764	2	STRG.23726.1,blat.proc3829899.chain_765	2
scaffold_20	starts_in_intron	1754551	1754551	+	asmbl_25609	none	blat.proc3829883.chain_57	1	STRG.22907.1,STRG.22907.2,STRG.22907.3,STRG.22907.4,Trinity_GG_12636_c0_g1_i2,Trinity_GG_12636_c0_g1_i4,blat.proc3829883.chain_55,blat.proc3829883.chain_56,blat.proc3829883.chain_58	9
scaffold_11	retained_exon	11931220	11931261	-	asmbl_7020	none	STRG.14160.1	1	STRG.14160.2	1
scaffold_27	retained_intron	6482619	6483087	-	asmbl_37012	none	STRG.29006.1,blat.proc3829901.chain_2183,blat.proc3829901.chain_2184	3	STRG.29006.2	1
scaffold_506	retained_intron	2659	3028	+	asmbl_46457	none	blat.proc3829885.chain_3371	1	STRG.30329.1,blat.proc3829885.chain_3373,blat.proc3829885.chain_3374	3
scaffold_8	alternate_exon	2686894	2690100	+	asmbl_51723	none	STRG.9799.2,Trinity_GG_5401_c1_g1_i2,blat.proc3829875.chain_2212	3	STRG.9799.3	1
scaffold_5	ends_in_intron	9808231	9808231	+	asmbl_44310	none	blat.proc3829873.chain_2440	1	STRG.6288.1,blat.proc3829873.chain_2441	2
scaffold_6	spliced_intron	17881666	17881817	-	asmbl_49145,asmbl_49146,asmbl_49148,asmbl_49150,asmbl_49151	none	STRG.8474.1,STRG.8474.3,STRG.8474.4,Trinity_GG_21830_c0_g1_i2,Trinity_GG_21830_c0_g1_i3,Trinity_GG_21830_c0_g1_i4,blat.proc3829891.chain_764,blat.proc3829891.chain_766,blat.proc3829891.chain_767	9	Trinity_GG_21830_c0_g1_i1,blat.proc3829891.chain_765	2
scaffold_22	alternate_exon	8189900	8192811	-	asmbl_30221	none	STRG.25152.1,blat.proc3829899.chain_2243	2	STRG.25152.3	1
scaffold_5	retained_exon	11992177	11993127	-	asmbl_45815	none	STRG.6447.5	1	STRG.6447.1,blat.proc3829889.chain_2521	2
scaffold_9	alternate_exon	2798113	2804117	+	asmbl_53842,asmbl_53844,asmbl_53848	none	STRG.10912.1,STRG.10912.2,Trinity_GG_6054_c0_g1_i2,Trinity_GG_6054_c0_g1_i7,blat.proc3829875.chain_3365,blat.proc3829875.chain_3367,blat.proc3829875.chain_3369,blat.proc3829875.chain_3372	8	STRG.10912.3,Trinity_GG_6054_c0_g1_i6,blat.proc3829875.chain_3371	3
scaffold_26	alternate_exon	5479265	5479362	+	asmbl_35520,asmbl_35521	none	STRG.28234.1,STRG.28234.2	2	STRG.28234.3,STRG.28234.4	2
scaffold_1	spliced_intron	20024322	20024343	-	asmbl_1161	none	blat.proc3829887.chain_1274	1	STRG.1366.1,Trinity_GG_17773_c1_g1_i1,blat.proc3829887.chain_1275	3
scaffold_27	starts_in_intron	4758887	4758887	+	asmbl_36274	none	Trinity_GG_16015_c2_g1_i1,blat.proc3829885.chain_2050	2	STRG.28893.1,Trinity_GG_16015_c2_g1_i2,blat.proc3829885.chain_2049	3
scaffold_1	retained_intron	12335370	12335520	-	asmbl_713,asmbl_714	none	blat.proc3829887.chain_738,blat.proc3829887.chain_742	2	STRG.843.1,STRG.843.2,blat.proc3829887.chain_734,blat.proc3829887.chain_735,blat.proc3829887.chain_736,blat.proc3829887.chain_737,blat.proc3829887.chain_739,blat.proc3829887.chain_741,blat.proc3829887.chain_743,blat.proc3829887.chain_744,blat.proc3829887.chain_745,blat.proc3829887.chain_746	12
scaffold_719	starts_in_intron	4623	4623	+	asmbl_51564	none	Trinity_GG_16825_c0_g1_i3	1	STRG.30416.1,blat.proc3829885.chain_3419	2
scaffold_17	spliced_intron	9868140	9868228	-	asmbl_19259,asmbl_19261,asmbl_19262	none	STRG.20591.1,STRG.20591.3,blat.proc3829897.chain_1550	3	STRG.20591.2,blat.proc3829897.chain_1549	2
scaffold_15	retained_intron	2797848	2798115	+	asmbl_14020	none	STRG.18051.1,blat.proc3829879.chain_2696	2	blat.proc3829879.chain_2695	1
scaffold_3	alternate_exon	12042935	12043488	-	asmbl_39154,asmbl_39156	none	STRG.3625.1,Trinity_GG_19000_c0_g1_i2,blat.proc3829887.chain_3397,blat.proc3829887.chain_3399	4	STRG.3625.2,STRG.3625.3,blat.proc3829887.chain_3398	3
scaffold_26	ends_in_intron	425924	425924	+	asmbl_35211	none	blat.proc3829885.chain_852	1	STRG.27850.1,blat.proc3829885.chain_853,blat.proc3829885.chain_854,blat.proc3829885.chain_855	4
scaffold_6	ends_in_intron	3291669	3291669	+	asmbl_46772	none	blat.proc3829873.chain_3456	1	STRG.7328.1,blat.proc3829873.chain_3455	2
scaffold_8	retained_exon	6809252	6809297	-	asmbl_52883	none	STRG.10035.3	1	STRG.10035.2,blat.proc3829891.chain_2193	2
scaffold_15	alternate_exon	2782259	2782399	-	asmbl_15056	none	STRG.18054.1	1	STRG.18054.2,STRG.18054.3,blat.proc3829895.chain_2771	3
scaffold_1	ends_in_intron	1259631	1259631	-	asmbl_59	none	blat.proc3829885.chain_3670	1	STRG.75.1,STRG.75.3,blat.proc3829885.chain_3671,blat.proc3829885.chain_3672	4
scaffold_2	alt_acceptor	7241573	7241574	+	asmbl_24591	none	blat.proc3829871.chain_2172	1	STRG.2061.1,blat.proc3829871.chain_2164,blat.proc3829871.chain_2169,blat.proc3829871.chain_2170,blat.proc3829871.chain_2171	5
scaffold_23	spliced_intron	6688346	6688422	+	asmbl_30945	none	STRG.25982.2	1	blat.proc3829883.chain_2849,blat.proc3829883.chain_2850	2
scaffold_21	skipped_exon	9705783	9707076	-	asmbl_27982	none	STRG.24416.1	1	STRG.24416.2	1
scaffold_4	retained_intron	4121588	4121687	-	asmbl_41234,asmbl_41236	none	STRG.4323.2,Trinity_GG_19456_c0_g1_i5,blat.proc3829889.chain_475	3	STRG.4323.3,blat.proc3829889.chain_477	2
scaffold_7	alt_acceptor	8288330	8288331	-	asmbl_49804	none	Trinity_GG_22125_c0_g1_i2,blat.proc3829891.chain_1312	2	STRG.9052.1,STRG.9052.2,blat.proc3829891.chain_1311	3
scaffold_4	alternate_exon	18758290	18758471	-	asmbl_42137	none	STRG.5464.1	1	STRG.5464.2	1
scaffold_9	starts_in_intron	4815225	4815225	-	asmbl_54935	none	blat.proc3829891.chain_3206	1	STRG.11040.1,blat.proc3829891.chain_3205	2
scaffold_6	alt_acceptor	11482899	11482900	+	asmbl_47263,asmbl_47264,asmbl_47267,asmbl_47269	none	STRG.7936.1,STRG.7936.2,STRG.7936.4,blat.proc3829875.chain_299,blat.proc3829875.chain_300,blat.proc3829875.chain_304	6	STRG.7936.3,blat.proc3829875.chain_301	2
scaffold_22	retained_intron	11473745	11473840	+	asmbl_29679	none	blat.proc3829883.chain_2405	1	STRG.25469.1,Trinity_GG_14065_c0_g1_i3,blat.proc3829883.chain_2406	3
scaffold_21	starts_in_intron	4108814	4108814	+	asmbl_28527	none	STRG.23973.4	1	STRG.23973.1,STRG.23973.2,STRG.23973.3,blat.proc3829883.chain_1131	4
scaffold_19	retained_exon	3683433	3683525	+	asmbl_22134,asmbl_22136	none	STRG.22046.2,STRG.22046.6	2	STRG.22046.1,STRG.22046.3,STRG.22046.4	3
scaffold_17	alt_acceptor	748751	748752	+	asmbl_17695	none	STRG.19905.1	1	STRG.19905.2	1
scaffold_5	starts_in_intron	2535698	2535698	+	asmbl_43837,asmbl_43839	none	STRG.5769.2,STRG.5769.3	2	STRG.5769.1,blat.proc3829873.chain_1953,blat.proc3829873.chain_1955	3
scaffold_111	skipped_exon	6874	7192	+	asmbl_7364	none	STRG.30136.2,Trinity_GG_16691_c2_g1_i3,blat.proc3829885.chain_3191,blat.proc3829901.chain_3403	4	STRG.30136.1,Trinity_GG_16691_c2_g1_i2,blat.proc3829885.chain_3190	3
scaffold_25	starts_in_intron	8700065	8700065	-	asmbl_34432	none	STRG.27678.4,blat.proc3829901.chain_961	2	STRG.27678.2,blat.proc3829901.chain_954,blat.proc3829901.chain_957,blat.proc3829901.chain_960	4
scaffold_1	retained_intron	4386393	4386813	-	asmbl_187	none	STRG.266.2,Trinity_GG_17151_c0_g1_i1,blat.proc3829887.chain_147	3	STRG.266.1,blat.proc3829887.chain_146	2
scaffold_3	starts_in_intron	8422375	8422375	+	asmbl_40172	none	blat.proc3829871.chain_3572	1	STRG.3406.1,Trinity_GG_1924_c0_g1_i1,blat.proc3829871.chain_3571	3
scaffold_24	starts_in_intron	5773338	5773338	+	asmbl_32239	none	blat.proc3829883.chain_3507	1	STRG.26620.1,blat.proc3829883.chain_3506	2
scaffold_3	retained_exon	16078215	16078232	-	asmbl_39424,asmbl_39426	none	STRG.3885.2,STRG.3885.3,blat.proc3829887.chain_3685	3	STRG.3885.1,STRG.3885.4,blat.proc3829887.chain_3684	3
scaffold_6	retained_exon	13250309	13250661	-	asmbl_48838	none	STRG.8078.1	1	STRG.8078.2	1
scaffold_26	alt_acceptor	420298	420299	+	asmbl_35206	none	STRG.27840.1,blat.proc3829885.chain_857	2	STRG.27840.7	1
scaffold_4	starts_in_intron	14959214	14959214	+	asmbl_43247,asmbl_43248	none	blat.proc3829873.chain_1444,blat.proc3829873.chain_1445	2	STRG.5106.1,STRG.5106.2,blat.proc3829873.chain_1442,blat.proc3829873.chain_1446	4
scaffold_18	spliced_intron	7481614	7482977	-	asmbl_19973	none	Trinity_GG_28969_c0_g1_i2	1	STRG.21431.1,Trinity_GG_28969_c0_g1_i1,blat.proc3829897.chain_2214	3
scaffold_4	retained_exon	13076259	13076282	+	asmbl_43109,asmbl_43114	none	STRG.4945.1,STRG.4945.2,blat.proc3829873.chain_1237	3	STRG.4945.4,STRG.4945.5,blat.proc3829873.chain_1240	3
scaffold_22	spliced_intron	4278389	4278555	-	asmbl_29999	none	STRG.24827.2	1	STRG.24827.1,Trinity_GG_30895_c0_g1_i1,blat.proc3829899.chain_1969	3
scaffold_26	alt_acceptor	7484711	7484712	-	asmbl_34982,asmbl_34983	none	blat.proc3829901.chain_1526,blat.proc3829901.chain_1528	2	STRG.28364.1,blat.proc3829901.chain_1527	2
scaffold_28	ends_in_intron	5234695	5234695	-	asmbl_37590	none	Trinity_GG_33579_c0_g1_i7,blat.proc3829901.chain_2679	2	STRG.29652.1,STRG.29652.2,blat.proc3829901.chain_2678,blat.proc3829901.chain_2680,blat.proc3829901.chain_2683,blat.proc3829901.chain_2684,blat.proc3829901.chain_2685,blat.proc3829901.chain_2687	8
scaffold_25	starts_in_intron	1903741	1903741	-	asmbl_34041	none	STRG.27182.1	1	STRG.27182.3,STRG.27182.4	2
scaffold_3	alternate_exon	3247118	3247731	+	asmbl_39903	none	STRG.3087.5,blat.proc3829871.chain_3305	2	STRG.3087.1,STRG.3087.4,Trinity_GG_1771_c0_g1_i6,blat.proc3829871.chain_3299,blat.proc3829871.chain_3308	5
scaffold_1	starts_in_intron	20354200	20354200	+	asmbl_2613	none	STRG.1398.10	1	STRG.1398.2,STRG.1398.3,STRG.1398.4,STRG.1398.5,STRG.1398.6,STRG.1398.9,blat.proc3829871.chain_1414	7
scaffold_4	spliced_intron	19379192	19379340	+	asmbl_43482,asmbl_43483,asmbl_43485	none	Trinity_GG_2994_c1_g1_i2,blat.proc3829873.chain_1676,blat.proc3829873.chain_1677,blat.proc3829873.chain_1678	4	STRG.5522.1	1
scaffold_5	alt_donor	11630427	11630428	-	asmbl_45800	none	blat.proc3829889.chain_2525	1	blat.proc3829889.chain_2529	1
scaffold_19	alt_acceptor	8339617	8339618	+	asmbl_22319	none	STRG.22278.2	1	STRG.22278.1,blat.proc3829881.chain_3135,blat.proc3829897.chain_3006	3
scaffold_22	alt_donor	1002960	1002961	+	asmbl_29207,asmbl_29208,asmbl_29209	none	STRG.24742.1,STRG.24742.2,Trinity_GG_13691_c0_g1_i6,blat.proc3829883.chain_1807,blat.proc3829883.chain_1810,blat.proc3829883.chain_1811	6	STRG.24742.3,blat.proc3829883.chain_1808	2
scaffold_13	retained_intron	519849	520155	+	asmbl_10457,asmbl_10459,asmbl_10460,asmbl_10461	none	STRG.15434.1,STRG.15434.5,blat.proc3829879.chain_111,blat.proc3829879.chain_114,blat.proc3829879.chain_116	5	STRG.15434.2,STRG.15434.4,Trinity_GG_8491_c0_g1_i2,blat.proc3829879.chain_113,blat.proc3829879.chain_115	5
scaffold_6	alt_acceptor	9846483	9846484	+	asmbl_47181	none	STRG.7819.2	1	STRG.7819.1,blat.proc3829875.chain_139	2
scaffold_5	spliced_intron	18574353	18574611	+	asmbl_44928	none	STRG.6982.1,Trinity_GG_3827_c0_g1_i3,blat.proc3829873.chain_3100	3	blat.proc3829873.chain_3099	1
scaffold_8	ends_in_intron	17682506	17682506	-	asmbl_53495	none	Trinity_GG_22921_c0_g1_i3,blat.proc3829891.chain_2784	2	STRG.10682.2,Trinity_GG_22921_c0_g1_i1,blat.proc3829891.chain_2785	3
scaffold_3180	alt_acceptor	367	368	-	asmbl_40891	none	blat.proc3829883.chain_3255	1	blat.proc3829885.chain_3646	1
scaffold_14	ends_in_intron	13222014	13222014	+	asmbl_12448	none	blat.proc3829879.chain_2209	1	STRG.17600.5	1
scaffold_2	skipped_exon	924505	926762	+	asmbl_24174,asmbl_24175	none	blat.proc3829871.chain_1535,blat.proc3829871.chain_1542	2	STRG.1569.4	1
scaffold_1	spliced_intron	4864196	4864311	-	asmbl_222	none	STRG.287.1,blat.proc3829887.chain_168	2	STRG.287.2,blat.proc3829887.chain_169	2
scaffold_10	skipped_exon	5857032	5858338	-	asmbl_3313,asmbl_3314,asmbl_3315	none	STRG.12401.1,STRG.12401.2,STRG.12401.3,blat.proc3829893.chain_872	4	blat.proc3829893.chain_873	1
scaffold_21	retained_intron	1653679	1654377	+	asmbl_28370,asmbl_28371	none	Trinity_GG_13211_c0_g1_i3,Trinity_GG_13211_c0_g1_i7,blat.proc3829883.chain_989,blat.proc3829883.chain_992	4	STRG.23807.1,Trinity_GG_13211_c0_g1_i2,Trinity_GG_13211_c0_g1_i6,blat.proc3829883.chain_988,blat.proc3829883.chain_990	5
scaffold_5	spliced_intron	1249035	1249146	-	asmbl_45235,asmbl_45240	none	STRG.5683.1,blat.proc3829889.chain_1782,blat.proc3829889.chain_1783,blat.proc3829889.chain_1784	4	Trinity_GG_20219_c0_g1_i7,blat.proc3829889.chain_1779	2
scaffold_5	spliced_intron	19145546	19145630	-	asmbl_46270,asmbl_46272	none	STRG.7015.1,STRG.7015.2,blat.proc3829889.chain_3029	3	Trinity_GG_20933_c0_g1_i1,blat.proc3829889.chain_3028	2
scaffold_1	starts_in_intron	201835	201835	+	asmbl_1404	none	Trinity_GG_20_c0_g1_i2,blat.proc3829871.chain_31	2	STRG.16.1,Trinity_GG_20_c0_g1_i1,blat.proc3829871.chain_30	3
scaffold_21	spliced_intron	473831	473938	+	asmbl_28286,asmbl_28288	none	STRG.23729.1,Trinity_GG_13157_c0_g1_i4,blat.proc3829883.chain_899,blat.proc3829883.chain_901	4	blat.proc3829883.chain_900	1
scaffold_6	starts_in_intron	9769922	9769922	+	asmbl_47175	none	blat.proc3829875.chain_128	1	STRG.7816.1,blat.proc3829875.chain_127	2
scaffold_13	ends_in_intron	4606419	4606419	-	asmbl_9608	none	Trinity_GG_25880_c0_g2_i1,blat.proc3829895.chain_535	2	STRG.15781.1,Trinity_GG_25880_c0_g1_i1,blat.proc3829895.chain_530	3
scaffold_21	spliced_intron	8529229	8529354	+	asmbl_28828,asmbl_28830	none	STRG.24375.1,blat.proc3829883.chain_1389,blat.proc3829883.chain_1391,blat.proc3829883.chain_1392	4	blat.proc3829883.chain_1393	1
scaffold_3	alternate_exon	1545706	1546239	+	asmbl_39814	none	STRG.2986.1,blat.proc3829871.chain_3099	2	STRG.2986.2,blat.proc3829871.chain_3100	2
scaffold_10	retained_intron	5823736	5824113	+	asmbl_4488	none	STRG.12397.1,blat.proc3829877.chain_1049	2	STRG.12397.2,Trinity_GG_6884_c0_g1_i4,blat.proc3829877.chain_1050	3
scaffold_10	spliced_intron	3927526	3927935	-	asmbl_3158	none	blat.proc3829893.chain_690	1	STRG.12230.2	1
scaffold_13	retained_intron	9997163	9997360	-	asmbl_10009	none	STRG.16227.2,blat.proc3829895.chain_972	2	STRG.16227.1,blat.proc3829895.chain_968	2
scaffold_25	alt_acceptor	3632838	3632839	+	asmbl_33433	none	blat.proc3829885.chain_341	1	STRG.27294.1,STRG.27294.2,STRG.27294.3,blat.proc3829885.chain_342,blat.proc3829885.chain_343	5
scaffold_14	alternate_exon	12766789	12767228	-	asmbl_13585,asmbl_13589	none	STRG.17572.5,blat.proc3829895.chain_2357,blat.proc3829895.chain_2363	3	STRG.17572.1,blat.proc3829895.chain_2355,blat.proc3829895.chain_2360,blat.proc3829895.chain_2361	4
scaffold_14	spliced_intron	13897914	13898395	+	asmbl_12496,asmbl_12497,asmbl_12498,asmbl_12499,asmbl_12500	none	STRG.17653.1,STRG.17653.2,STRG.17653.3,STRG.17653.4,STRG.17653.5,blat.proc3829879.chain_2349	6	blat.proc3829879.chain_2353	1
scaffold_15	starts_in_intron	10770841	10770841	+	asmbl_14412	none	blat.proc3829879.chain_3158	1	STRG.18552.3,STRG.18552.5,STRG.18552.6,blat.proc3829879.chain_3157,blat.proc3829879.chain_3159,blat.proc3829879.chain_3161,blat.proc3829879.chain_3162	7
scaffold_9	retained_intron	18394317	18394385	-	asmbl_55666	none	blat.proc3829893.chain_281	1	STRG.11880.1,blat.proc3829893.chain_282	2
scaffold_3	alt_donor	3315147	3315148	+	asmbl_39910	none	blat.proc3829887.chain_2845	1	blat.proc3829887.chain_2846	1
scaffold_2	alt_donor	14193797	14193798	-	asmbl_23581	none	STRG.2417.2	1	STRG.2417.1,blat.proc3829887.chain_2207,blat.proc3829887.chain_2208,blat.proc3829887.chain_2209,blat.proc3829887.chain_2210,blat.proc3829887.chain_2212	6
scaffold_2	ends_in_intron	14551368	14551368	+	asmbl_24988	none	blat.proc3829871.chain_2567	1	STRG.2454.1,STRG.2454.2	2
scaffold_8	alt_acceptor	4897728	4897729	+	asmbl_51860,asmbl_51864,asmbl_51865,asmbl_51866	none	STRG.9952.1,blat.proc3829875.chain_2363,blat.proc3829875.chain_2364,blat.proc3829875.chain_2365,blat.proc3829875.chain_2366	5	STRG.9952.2	1
scaffold_11	spliced_intron	16649266	16649558	+	asmbl_6149	none	STRG.14343.1,blat.proc3829877.chain_2835	2	STRG.14343.2,Trinity_GG_7904_c0_g1_i2,blat.proc3829877.chain_2836	3
scaffold_17	alternate_exon	2532999	2534984	-	asmbl_18800,asmbl_18801,asmbl_18804	none	STRG.20035.1,STRG.20035.2,blat.proc3829897.chain_984,blat.proc3829897.chain_985,blat.proc3829897.chain_987	5	STRG.20035.3,blat.proc3829897.chain_988	2
scaffold_26	retained_intron	9773180	9773315	+	asmbl_35779,asmbl_35783	none	STRG.28501.6,blat.proc3829885.chain_1435	2	STRG.28501.1,STRG.28501.10,STRG.28501.2,STRG.28501.3,STRG.28501.4,STRG.28501.5,STRG.28501.9,blat.proc3829885.chain_1432,blat.proc3829885.chain_1433,blat.proc3829885.chain_1434,blat.proc3829885.chain_1436,blat.proc3829885.chain_1437	12
scaffold_19	skipped_exon	2780544	2780920	+	asmbl_22078	none	STRG.21950.2	1	STRG.21950.1,blat.proc3829881.chain_2913	2
scaffold_11	skipped_exon	17099044	17101007	+	asmbl_6177	none	STRG.14365.1	1	STRG.14365.2,STRG.14365.3,blat.proc3829877.chain_2870,blat.proc3829877.chain_2871	4
scaffold_23	retained_intron	3233100	3233254	-	asmbl_31509	none	Trinity_GG_31384_c0_g1_i2,blat.proc3829899.chain_2812	2	STRG.25734.1,blat.proc3829899.chain_2811	2
scaffold_5	ends_in_intron	13234672	13234672	+	asmbl_44535	none	Trinity_GG_3573_c0_g1_i1,blat.proc3829873.chain_2682	2	STRG.6553.1,STRG.6553.2,STRG.6553.3,blat.proc3829873.chain_2683,blat.proc3829873.chain_2685	5
scaffold_1	retained_intron	5740198	5740435	+	asmbl_1768	none	blat.proc3829871.chain_372	1	STRG.382.2,blat.proc3829871.chain_370,blat.proc3829871.chain_371,blat.proc3829871.chain_373,blat.proc3829871.chain_375	5
scaffold_18	alternate_exon	8722950	8725813	-	asmbl_20053	none	STRG.21532.1,blat.proc3829897.chain_2346	2	STRG.21532.2	1
scaffold_2	alt_donor	3771198	3771199	+	asmbl_24335	none	STRG.1809.1	1	blat.proc3829871.chain_1873	1
scaffold_7	retained_intron	2509920	2510092	-	asmbl_49573	none	Trinity_GG_21970_c0_g1_i2,blat.proc3829891.chain_1048	2	STRG.8674.1,Trinity_GG_21970_c0_g1_i1,blat.proc3829891.chain_1049	3
scaffold_5	retained_intron	10171095	10171274	+	asmbl_44334	none	blat.proc3829873.chain_2377	1	STRG.6310.1,blat.proc3829873.chain_2380	2
scaffold_8	retained_intron	9122376	9122775	-	asmbl_52999	none	STRG.10160.4,Trinity_GG_22689_c0_g1_i1,blat.proc3829891.chain_2329	3	STRG.10160.2,STRG.10160.3,blat.proc3829891.chain_2327,blat.proc3829891.chain_2328,blat.proc3829891.chain_2330	5
scaffold_26	spliced_intron	3563037	3563144	+	asmbl_35321,asmbl_35323,asmbl_35326	none	STRG.28018.1,STRG.28018.2,blat.proc3829885.chain_1001,blat.proc3829885.chain_1005	4	STRG.28018.5,Trinity_GG_15467_c0_g1_i5,blat.proc3829885.chain_1002,blat.proc3829885.chain_1004	4
scaffold_14	alt_donor	15346295	15346296	-	asmbl_13696	none	STRG.17749.1,blat.proc3829895.chain_2513	2	STRG.17749.3,blat.proc3829895.chain_2514	2
scaffold_3	alternate_exon	6183440	6184098	-	asmbl_38864,asmbl_38865	none	blat.proc3829887.chain_3018	1	STRG.3262.1,blat.proc3829887.chain_3017	2
scaffold_10	starts_in_intron	15939398	15939398	+	asmbl_4974	none	Trinity_GG_7208_c0_g1_i2,blat.proc3829877.chain_1634	2	STRG.13071.1,blat.proc3829877.chain_1633	2
scaffold_18	alternate_exon	7508223	7508261	-	asmbl_19981	none	STRG.21434.2	1	STRG.21434.1	1
scaffold_3	starts_in_intron	4268483	4268483	-	asmbl_38750	none	STRG.3118.2	1	STRG.3118.3,Trinity_GG_18712_c0_g1_i1,blat.proc3829887.chain_2883	3
scaffold_12	alternate_exon	11691850	11693415	-	asmbl_7956	none	STRG.15080.1,blat.proc3829893.chain_3428	2	STRG.15080.2,blat.proc3829893.chain_3430	2
scaffold_2	alternate_exon	5113328	5113483	-	asmbl_23155	none	STRG.1926.1,Trinity_GG_18072_c1_g1_i2,blat.proc3829887.chain_1754	3	Trinity_GG_18072_c1_g1_i1,blat.proc3829887.chain_1755	2
scaffold_2	retained_intron	12645103	12645138	-	asmbl_23484	none	STRG.2308.2	1	STRG.2308.1	1
scaffold_18	alt_acceptor	7185322	7185323	+	asmbl_20747	none	STRG.21414.2	1	STRG.21414.1,STRG.21414.3,Trinity_GG_11822_c0_g1_i1,blat.proc3829881.chain_2373	4
scaffold_8	retained_intron	14130033	14130103	+	asmbl_52352	none	STRG.10511.2	1	STRG.10511.1,blat.proc3829875.chain_3017	2
scaffold_18	starts_in_intron	836819	836819	-	asmbl_19632	none	STRG.20998.3,blat.proc3829897.chain_1928	2	blat.proc3829897.chain_1924,blat.proc3829897.chain_1925,blat.proc3829897.chain_1926	3
scaffold_13	alternate_exon	15636385	15636464	+	asmbl_11500	none	STRG.16594.1,blat.proc3829879.chain_1348	2	STRG.16594.3	1
scaffold_4	retained_intron	115885	116152	-	asmbl_41048	none	STRG.4111.2,Trinity_GG_19297_c0_g1_i1,blat.proc3829889.chain_207	3	STRG.4111.1,blat.proc3829889.chain_208	2
scaffold_12	starts_in_intron	8823089	8823089	+	asmbl_8796	none	Trinity_GG_8235_c0_g1_i1,blat.proc3829877.chain_3396	2	STRG.14875.1,Trinity_GG_8235_c0_g1_i2,Trinity_GG_8235_c0_g1_i4,Trinity_GG_8235_c0_g1_i6,blat.proc3829877.chain_3397,blat.proc3829877.chain_3399,blat.proc3829877.chain_3400	7
scaffold_8	starts_in_intron	2662748	2662748	+	asmbl_51718	none	Trinity_GG_5400_c1_g1_i1,blat.proc3829875.chain_2209	2	STRG.9797.1,STRG.9797.2,Trinity_GG_5400_c0_g1_i1,Trinity_GG_5400_c0_g1_i2,blat.proc3829875.chain_2207,blat.proc3829875.chain_2208	6
scaffold_13	spliced_intron	16460477	16460808	-	asmbl_10273,asmbl_10274,asmbl_10276,asmbl_10277	none	STRG.16689.1,STRG.16689.2,STRG.16689.3,STRG.16689.4,Trinity_GG_26334_c0_g1_i2,Trinity_GG_26334_c0_g1_i3,blat.proc3829895.chain_1353,blat.proc3829895.chain_1355,blat.proc3829895.chain_1356,blat.proc3829895.chain_1357	10	Trinity_GG_26334_c0_g1_i4,blat.proc3829895.chain_1354	2
scaffold_21	retained_intron	8278548	8278631	+	asmbl_28822	none	STRG.24353.4	1	STRG.24353.2	1
scaffold_5	ends_in_intron	15625456	15625456	-	asmbl_46093	none	blat.proc3829889.chain_2828	1	STRG.6749.1,STRG.6749.2,blat.proc3829889.chain_2825,blat.proc3829889.chain_2827	4
scaffold_8	skipped_exon	16503765	16504947	-	asmbl_53411,asmbl_53413,asmbl_53414,asmbl_53416,asmbl_53418,asmbl_53419,asmbl_53422,asmbl_53424,asmbl_53427,asmbl_53428,asmbl_53429	none	STRG.10621.3,STRG.10621.4,STRG.10621.5,Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2860,blat.proc3829891.chain_2863,blat.proc3829891.chain_2864,blat.proc3829891.chain_2867,blat.proc3829891.chain_2868,blat.proc3829891.chain_2869,blat.proc3829891.chain_2870	15	STRG.10621.1,blat.proc3829891.chain_2859,blat.proc3829891.chain_2862,blat.proc3829891.chain_2865,blat.proc3829891.chain_2871	5
scaffold_19	spliced_intron	5155289	5155500	+	asmbl_22157	none	STRG.22072.4,blat.proc3829881.chain_3011	2	STRG.22072.2,blat.proc3829881.chain_3012	2
scaffold_16	retained_exon	13948691	13948919	-	asmbl_16598,asmbl_16600	none	STRG.19780.2,blat.proc3829897.chain_715,blat.proc3829897.chain_716	3	STRG.19780.1	1
scaffold_15	retained_exon	3713334	3713461	-	asmbl_15124	none	STRG.18125.1,blat.proc3829895.chain_2822	2	STRG.18125.2	1
scaffold_26	retained_intron	3623024	3623045	+	asmbl_35335	none	Trinity_GG_15465_c1_g1_i1	1	STRG.28026.3	1
scaffold_25	retained_intron	6324156	6324245	-	asmbl_34331,asmbl_34332,asmbl_34334	none	STRG.27499.2,STRG.27499.3,blat.proc3829901.chain_865	3	STRG.27499.1,blat.proc3829901.chain_861,blat.proc3829901.chain_862	3
scaffold_2	spliced_intron	7988750	7988928	+	asmbl_24640	none	STRG.2093.2,Trinity_GG_1145_c1_g1_i2,blat.proc3829871.chain_2091	3	STRG.2093.1,Trinity_GG_1145_c1_g1_i1,blat.proc3829871.chain_2090	3
scaffold_25	alternate_exon	882177	888290	-	asmbl_34001	none	STRG.27122.1,blat.proc3829901.chain_417	2	STRG.27122.2,blat.proc3829901.chain_416	2
scaffold_17	alternate_exon	8570557	8570755	+	asmbl_18127	none	STRG.20457.2,blat.proc3829881.chain_1242	2	STRG.20457.1,Trinity_GG_11208_c0_g1_i1	2
scaffold_23	spliced_intron	2305426	2306387	+	asmbl_30686	none	STRG.25687.2,Trinity_GG_14156_c0_g1_i4,blat.proc3829883.chain_2533	3	Trinity_GG_14156_c0_g1_i5,blat.proc3829883.chain_2530	2
scaffold_12	spliced_intron	1059560	1059598	+	asmbl_8421	none	STRG.14436.4	1	STRG.14436.1,STRG.14436.2,STRG.14436.3,blat.proc3829877.chain_2886	4
scaffold_28	alt_acceptor	7881061	7881062	-	asmbl_37756	none	STRG.29846.1,blat.proc3829901.chain_2977	2	blat.proc3829901.chain_2975,blat.proc3829901.chain_2978	2
scaffold_1	spliced_intron	14320880	14321243	+	asmbl_2359	none	STRG.1024.4,blat.proc3829871.chain_1130	2	STRG.1024.2,blat.proc3829871.chain_1127,blat.proc3829871.chain_1128	3
scaffold_3	alt_acceptor	3244368	3244369	+	asmbl_39900	none	STRG.3087.3	1	STRG.3087.1,blat.proc3829871.chain_3299,blat.proc3829871.chain_3307	3
scaffold_6	alt_acceptor	78361	78362	-	asmbl_47962,asmbl_47963,asmbl_47964	none	STRG.7058.1,STRG.7058.3,STRG.7058.4	3	STRG.7058.2	1
scaffold_28	starts_in_intron	2341427	2341427	-	asmbl_37368	none	Trinity_GG_33454_c0_g1_i4,blat.proc3829901.chain_2459	2	Trinity_GG_33454_c0_g1_i3,blat.proc3829901.chain_2458,blat.proc3829901.chain_2460	3
scaffold_5	retained_exon	11639308	11639396	+	asmbl_44424	none	STRG.6414.3,Trinity_GG_3493_c0_g1_i2,blat.proc3829873.chain_2555	3	STRG.6414.1,Trinity_GG_3493_c0_g1_i3,blat.proc3829873.chain_2556	3
scaffold_6	alt_donor	18836317	18836318	+	asmbl_47798,asmbl_47802	none	STRG.8547.5,blat.proc3829875.chain_888	2	STRG.8547.1,STRG.8547.2,STRG.8547.3,STRG.8547.4,STRG.8547.6,Trinity_GG_4669_c0_g1_i6,blat.proc3829875.chain_887,blat.proc3829875.chain_889,blat.proc3829875.chain_890,blat.proc3829875.chain_891	10
scaffold_7	starts_in_intron	1517758	1517758	+	asmbl_50492	none	STRG.8636.2	1	STRG.8636.1,blat.proc3829875.chain_982	2
scaffold_11	skipped_exon	3496428	3497357	+	asmbl_5400	none	STRG.13472.4	1	STRG.13472.2	1
scaffold_23	spliced_intron	10213636	10214194	+	asmbl_31133	none	STRG.26209.1,blat.proc3829883.chain_3158	2	STRG.26209.2,STRG.26209.3,blat.proc3829883.chain_3155	3
scaffold_12	spliced_intron	4983043	4983368	+	asmbl_8587	none	blat.proc3829877.chain_3084	1	STRG.14656.2,Trinity_GG_8053_c0_g1_i3,blat.proc3829877.chain_3087,blat.proc3829877.chain_3088	4
scaffold_4	spliced_intron	8746286	8746309	+	asmbl_42908	none	STRG.4689.1	1	blat.proc3829873.chain_1036	1
scaffold_23	alt_donor	7005931	7005932	-	asmbl_31724	none	STRG.26005.2	1	STRG.26005.3,blat.proc3829899.chain_3077	2
scaffold_28	retained_intron	226675	226779	-	asmbl_37225	none	STRG.29227.3	1	STRG.29227.1,STRG.29227.2	2
scaffold_7	alt_donor	17313645	17313646	+	asmbl_51363	none	STRG.9596.3	1	STRG.9596.1,STRG.9596.2,blat.proc3829875.chain_1972	3
scaffold_6	alternate_exon	3535361	3535568	-	asmbl_48213	none	blat.proc3829889.chain_3371	1	blat.proc3829889.chain_3370	1
scaffold_5	starts_in_intron	7318563	7318563	+	asmbl_44154,asmbl_44155	none	Trinity_GG_3345_c0_g2_i1,blat.proc3829873.chain_2277	2	STRG.6121.1,STRG.6121.2,Trinity_GG_3345_c0_g1_i1,Trinity_GG_3345_c0_g1_i2,blat.proc3829873.chain_2275,blat.proc3829873.chain_2276	6
scaffold_23	retained_intron	5732593	5732880	+	asmbl_30889,asmbl_30890	none	STRG.25924.2,Trinity_GG_14300_c0_g1_i2,Trinity_GG_14300_c0_g1_i3,blat.proc3829883.chain_2791,blat.proc3829883.chain_2792	5	STRG.25924.1,Trinity_GG_14300_c0_g1_i1,blat.proc3829883.chain_2790	3
scaffold_7	alt_acceptor	688293	688294	+	asmbl_50438	none	STRG.8594.4	1	STRG.8594.1,STRG.8594.2	2
scaffold_15	alt_donor	9856877	9856878	-	asmbl_15434,asmbl_15435,asmbl_15436	none	STRG.18491.1,STRG.18491.2,STRG.18491.3	3	STRG.18491.4	1
scaffold_11	starts_in_intron	6956820	6956820	-	asmbl_6726,asmbl_6727	none	blat.proc3829893.chain_2162,blat.proc3829893.chain_2165	2	STRG.13710.1,STRG.13710.2,STRG.13710.3,blat.proc3829893.chain_2161,blat.proc3829893.chain_2163,blat.proc3829893.chain_2164	6
scaffold_2	alt_donor	4578060	4578061	+	asmbl_24379,asmbl_24384,asmbl_24385	none	STRG.1884.2,Trinity_GG_1044_c1_g1_i4,blat.proc3829871.chain_1915,blat.proc3829871.chain_1916,blat.proc3829871.chain_1917	5	STRG.1884.3	1
scaffold_22	alt_acceptor	2404552	2404553	+	asmbl_29238	none	blat.proc3829883.chain_1763	1	STRG.24765.1,STRG.24765.2,blat.proc3829883.chain_1762	3
scaffold_5	alt_donor	10983639	10983640	+	asmbl_44390	none	STRG.6368.1	1	STRG.6368.2	1
scaffold_1	retained_intron	14251914	14252304	-	asmbl_882	none	STRG.1012.1,blat.proc3829887.chain_870	2	STRG.1012.2	1
scaffold_510	spliced_intron	3010	3063	-	asmbl_46465	none	STRG.30341.1	1	STRG.30341.3,blat.proc3829901.chain_3390,blat.proc3829901.chain_3391	3
scaffold_21	spliced_intron	5528725	5528797	+	asmbl_28592,asmbl_28594	none	STRG.24070.1,STRG.24070.2,blat.proc3829883.chain_1218	3	blat.proc3829883.chain_1219	1
scaffold_17	alt_acceptor	2709582	2709583	+	asmbl_17816,asmbl_17818	none	STRG.20057.2,blat.proc3829881.chain_818,blat.proc3829881.chain_819	3	STRG.20057.1	1
scaffold_16	starts_in_intron	7887872	7887872	-	asmbl_16382	none	Trinity_GG_27900_c0_g1_i1,blat.proc3829897.chain_430	2	STRG.19419.1,blat.proc3829897.chain_432	2
scaffold_17	retained_intron	9006765	9006969	+	asmbl_18182	none	blat.proc3829881.chain_1318	1	STRG.20513.1,blat.proc3829881.chain_1321	2
scaffold_21	alternate_exon	7951624	7951761	-	asmbl_27892	none	STRG.24316.1,blat.proc3829899.chain_1375	2	STRG.24316.2	1
scaffold_20	spliced_intron	11547068	11547149	-	asmbl_27077	none	STRG.23646.1,blat.proc3829899.chain_644	2	Trinity_GG_30178_c0_g1_i1,blat.proc3829899.chain_643	2
scaffold_21	ends_in_intron	9732363	9732363	-	asmbl_27989	none	Trinity_GG_30659_c2_g1_i1,blat.proc3829899.chain_1560	2	STRG.24420.1,blat.proc3829899.chain_1558	2
scaffold_4	alt_donor	2201050	2201051	-	asmbl_41134,asmbl_41135	none	STRG.4215.1,blat.proc3829889.chain_328,blat.proc3829889.chain_329	3	STRG.4215.2	1
scaffold_1	spliced_intron	14375886	14375983	+	asmbl_2370	none	STRG.1034.1,blat.proc3829871.chain_1149	2	Trinity_GG_634_c0_g1_i2,blat.proc3829871.chain_1148	2
scaffold_10	alt_donor	17007480	17007481	+	asmbl_5010,asmbl_5012	none	STRG.13136.1,STRG.13136.3,Trinity_GG_7232_c0_g1_i1,blat.proc3829877.chain_1665	4	STRG.13136.2,STRG.13136.4,Trinity_GG_7232_c0_g1_i2,blat.proc3829877.chain_1666	4
scaffold_27	alt_donor	6258961	6258962	+	asmbl_36351	none	blat.proc3829885.chain_2095	1	STRG.28995.2,STRG.28995.3,blat.proc3829885.chain_2096,blat.proc3829885.chain_2097	4
scaffold_18	ends_in_intron	5563924	5563924	-	asmbl_19894	none	blat.proc3829897.chain_2183	1	STRG.21297.1,STRG.21297.2,Trinity_GG_28951_c1_g1_i5,Trinity_GG_28951_c1_g1_i6,blat.proc3829897.chain_2181,blat.proc3829897.chain_2185	6
scaffold_16	starts_in_intron	4911421	4911421	-	asmbl_16256,asmbl_16257	none	STRG.19258.3,Trinity_GG_27837_c0_g1_i2,blat.proc3829897.chain_311	3	STRG.19258.1,STRG.19258.2,Trinity_GG_27837_c0_g1_i3,blat.proc3829897.chain_313	4
scaffold_12	alt_acceptor	4213847	4213848	+	asmbl_8548,asmbl_8551	none	STRG.14588.1,STRG.14588.2,blat.proc3829877.chain_3115	3	STRG.14588.3,blat.proc3829877.chain_3117	2
scaffold_26	alt_donor	3562965	3562966	+	asmbl_35322	none	STRG.28018.4,blat.proc3829885.chain_1003	2	STRG.28018.1,STRG.28018.2,blat.proc3829885.chain_1001,blat.proc3829885.chain_1005	4
scaffold_15	ends_in_intron	12393927	12393927	-	asmbl_15589	none	Trinity_GG_27509_c0_g1_i4,blat.proc3829895.chain_3451	2	STRG.18686.2,STRG.18686.3,STRG.18686.4,STRG.18686.5,blat.proc3829895.chain_3457	5
scaffold_21	spliced_intron	1633782	1633907	+	asmbl_28365	none	STRG.23803.2,blat.proc3829883.chain_983	2	STRG.23803.1,blat.proc3829883.chain_985	2
scaffold_9	alternate_exon	8587196	8587896	-	asmbl_55102	none	STRG.11258.2,blat.proc3829891.chain_3408	2	STRG.11258.1	1
scaffold_23	alternate_exon	5616090	5619809	-	asmbl_31645	none	STRG.25917.3,blat.proc3829899.chain_3025	2	Trinity_GG_31507_c0_g1_i1,blat.proc3829899.chain_3023	2
scaffold_20	alternate_exon	11480895	11481277	+	asmbl_26206	none	STRG.23639.5,Trinity_GG_13053_c0_g2_i1,blat.proc3829883.chain_718	3	STRG.23639.2,STRG.23639.4,Trinity_GG_13053_c0_g1_i3,blat.proc3829883.chain_716	4
scaffold_7	spliced_intron	706941	707196	-	asmbl_49500,asmbl_49501,asmbl_49502	none	STRG.8597.2,STRG.8597.3,Trinity_GG_21931_c0_g1_i2,Trinity_GG_21931_c0_g1_i6,blat.proc3829891.chain_952,blat.proc3829891.chain_953,blat.proc3829891.chain_954	7	blat.proc3829891.chain_955	1
scaffold_506	starts_in_intron	4346	4346	+	asmbl_46460	none	Trinity_GG_16795_c0_g1_i5,blat.proc3829885.chain_3375	2	STRG.30329.1,STRG.30329.2,blat.proc3829885.chain_3371,blat.proc3829885.chain_3372,blat.proc3829885.chain_3373,blat.proc3829885.chain_3374	6
scaffold_8	spliced_intron	2655012	2655188	-	asmbl_52706	none	STRG.9791.3,blat.proc3829891.chain_1936	2	STRG.9791.4,blat.proc3829891.chain_1935	2
scaffold_11	spliced_intron	8014909	8015006	-	asmbl_6792	none	STRG.13799.1,blat.proc3829893.chain_2268	2	blat.proc3829893.chain_2267	1
scaffold_2	skipped_exon	16357457	16357947	+	asmbl_25154	none	STRG.2573.2	1	STRG.2573.1,blat.proc3829871.chain_2761	2
scaffold_4	alternate_exon	249397	249449	+	asmbl_42417	none	STRG.4120.1	1	Trinity_GG_2300_c0_g1_i1,blat.proc3829873.chain_494	2
scaffold_11	starts_in_intron	13649772	13649772	-	asmbl_7130	none	blat.proc3829893.chain_2584	1	STRG.14211.1,STRG.14211.2,blat.proc3829893.chain_2581,blat.proc3829893.chain_2583	4
scaffold_20	spliced_intron	2613659	2614166	-	asmbl_26577	none	STRG.22975.1,blat.proc3829897.chain_3704	2	STRG.22975.2	1
scaffold_2	ends_in_intron	3632250	3632250	+	asmbl_24313	none	STRG.1787.3	1	STRG.1787.1,STRG.1787.2,blat.proc3829871.chain_1793	3
scaffold_14	retained_exon	10371698	10371735	-	asmbl_13401	none	STRG.17373.2,blat.proc3829895.chain_2115	2	STRG.17373.1,blat.proc3829895.chain_2116	2
scaffold_6	spliced_intron	13268432	13268569	+	asmbl_47451,asmbl_47455	none	STRG.8085.1,STRG.8085.2,blat.proc3829875.chain_493	3	blat.proc3829875.chain_494	1
scaffold_7	alt_donor	18771300	18771301	-	asmbl_50320,asmbl_50322	none	blat.proc3829891.chain_1876,blat.proc3829891.chain_1879	2	blat.proc3829891.chain_1877	1
scaffold_2	alt_acceptor	926069	926070	+	asmbl_24177	none	STRG.1569.3	1	STRG.1569.1,blat.proc3829871.chain_1534,blat.proc3829871.chain_1535,blat.proc3829871.chain_1537,blat.proc3829871.chain_1542	5
scaffold_11	spliced_intron	13246948	13247057	+	asmbl_6012,asmbl_6014	none	STRG.14180.1,blat.proc3829877.chain_2655,blat.proc3829877.chain_2656	3	blat.proc3829877.chain_2657,blat.proc3829877.chain_2659	2
scaffold_21	alternate_exon	6393408	6401453	+	asmbl_28651	none	STRG.24152.1,blat.proc3829883.chain_1199	2	STRG.24152.3,Trinity_GG_13325_c4_g1_i1,blat.proc3829883.chain_1204	3
scaffold_18	ends_in_intron	9634887	9634887	-	asmbl_20098	none	Trinity_GG_29068_c0_g1_i4,blat.proc3829897.chain_2406	2	STRG.21568.2,blat.proc3829897.chain_2402	2
scaffold_8	spliced_intron	17494980	17495324	+	asmbl_52476	none	STRG.10668.4	1	STRG.10668.2,Trinity_GG_5917_c0_g1_i2,Trinity_GG_5917_c1_g1_i1,blat.proc3829875.chain_3155,blat.proc3829875.chain_3160	5
scaffold_16	spliced_intron	6534617	6536084	+	asmbl_17108	none	STRG.19359.2	1	STRG.19359.1,Trinity_GG_10611_c0_g1_i1,Trinity_GG_10611_c0_g1_i3,Trinity_GG_10611_c0_g1_i4,blat.proc3829881.chain_250,blat.proc3829881.chain_251,blat.proc3829881.chain_252	7
scaffold_15	alt_acceptor	13573696	13573697	-	asmbl_15663	none	STRG.18777.1	1	STRG.18777.2,blat.proc3829895.chain_3535	2
scaffold_7	spliced_intron	12270450	12271204	+	asmbl_51110,asmbl_51116	none	STRG.9313.2,STRG.9313.3,STRG.9313.5,Trinity_GG_5141_c0_g1_i1,Trinity_GG_5141_c0_g1_i2,blat.proc3829875.chain_1714	6	STRG.9313.6,blat.proc3829875.chain_1715	2
scaffold_1097	alt_donor	2493	2494	+	asmbl_5201	none	blat.proc3829885.chain_3327,blat.proc3829885.chain_3504	2	STRG.30514.1,STRG.30514.3	2
scaffold_7	spliced_intron	13866490	13867075	-	asmbl_50140	none	blat.proc3829891.chain_1674	1	STRG.9469.2,blat.proc3829891.chain_1675	2
scaffold_8	starts_in_intron	17501183	17501183	+	asmbl_52472	none	Trinity_GG_5917_c0_g1_i5,blat.proc3829875.chain_3154	2	STRG.10668.1,STRG.10668.3,STRG.10668.5,blat.proc3829875.chain_3152,blat.proc3829875.chain_3153,blat.proc3829875.chain_3156,blat.proc3829875.chain_3157,blat.proc3829875.chain_3158	8
scaffold_13	alt_acceptor	11586715	11586716	+	asmbl_11277,asmbl_11278,asmbl_11280	none	STRG.16295.3,blat.proc3829879.chain_1019,blat.proc3829879.chain_1020	3	STRG.16295.2,blat.proc3829879.chain_1015,blat.proc3829879.chain_1018	3
scaffold_20	retained_intron	1664651	1664742	+	asmbl_25594	none	STRG.22894.1,blat.proc3829881.chain_3707,blat.proc3829881.chain_3708	3	STRG.22894.2	1
scaffold_1	spliced_intron	854276	854519	+	asmbl_1420,asmbl_1424,asmbl_1425,asmbl_1427	none	STRG.42.2,STRG.42.3,STRG.42.5,STRG.42.6	4	STRG.42.1,STRG.42.4	2
scaffold_1	spliced_intron	14359766	14359977	-	asmbl_909,asmbl_911,asmbl_913,asmbl_915	none	STRG.1033.1,STRG.1033.2,STRG.1033.3,blat.proc3829887.chain_882,blat.proc3829887.chain_884,blat.proc3829887.chain_887	6	Trinity_GG_17537_c0_g1_i2,blat.proc3829887.chain_885,blat.proc3829887.chain_886	3
scaffold_22	alt_acceptor	9725619	9725620	+	asmbl_29604	none	STRG.25291.2	1	STRG.25291.1,blat.proc3829883.chain_2279,blat.proc3829883.chain_2280	3
scaffold_13	retained_intron	3568630	3568756	+	asmbl_10693	none	blat.proc3829879.chain_280	1	STRG.15661.1,blat.proc3829879.chain_278	2
scaffold_15	starts_in_intron	5455408	5455408	-	asmbl_15224	none	blat.proc3829895.chain_2952	1	STRG.18219.1,STRG.18219.2,STRG.18219.3,Trinity_GG_27252_c0_g1_i10,Trinity_GG_27252_c0_g1_i2,blat.proc3829895.chain_2953,blat.proc3829895.chain_2954,blat.proc3829895.chain_2955,blat.proc3829895.chain_2956,blat.proc3829895.chain_2957	10
scaffold_4	retained_intron	3237335	3237419	-	asmbl_41163,asmbl_41165	none	Trinity_GG_19386_c0_g1_i6,blat.proc3829889.chain_369,blat.proc3829889.chain_371	3	STRG.4247.1,STRG.4247.2,blat.proc3829889.chain_367	3
scaffold_1	spliced_intron	11066267	11066373	+	asmbl_2040	none	STRG.722.1,Trinity_GG_425_c0_g1_i2,blat.proc3829871.chain_736	3	Trinity_GG_425_c0_g1_i1,blat.proc3829871.chain_735	2
scaffold_25	alt_acceptor	3632885	3632886	+	asmbl_33431,asmbl_33434,asmbl_33435,asmbl_33436	none	STRG.27294.1,STRG.27294.2,STRG.27294.3,blat.proc3829885.chain_342,blat.proc3829885.chain_343	5	blat.proc3829885.chain_341	1
scaffold_1325	alt_donor	1604	1605	+	asmbl_11684,asmbl_11686	none	STRG.30565.1,STRG.30565.2,Trinity_GG_16889_c0_g1_i2,blat.proc3829885.chain_3503	4	STRG.30565.3,STRG.30565.4	2
scaffold_28	alt_donor	5257640	5257641	-	asmbl_37605	none	STRG.29659.1,blat.proc3829901.chain_2781	2	STRG.29659.2,blat.proc3829901.chain_2782	2
scaffold_17	alt_donor	11959884	11959885	-	asmbl_19349,asmbl_19352	none	STRG.20711.2,blat.proc3829897.chain_1669,blat.proc3829897.chain_1671	3	STRG.20711.3	1
scaffold_369	spliced_intron	1680	1727	+	asmbl_41006	none	STRG.30276.2	1	STRG.30276.1	1
scaffold_4	skipped_exon	13762275	13763732	-	asmbl_41752	none	STRG.4997.3	1	STRG.4997.2,blat.proc3829889.chain_1048	2
scaffold_28	alt_donor	3821705	3821706	-	asmbl_37496,asmbl_37497	none	STRG.29556.1,blat.proc3829901.chain_2574,blat.proc3829901.chain_2576	3	STRG.29556.2,blat.proc3829901.chain_2575	2
scaffold_28	spliced_intron	295957	296054	+	asmbl_37961,asmbl_37962,asmbl_37963,asmbl_37964	none	STRG.29243.1,STRG.29243.2,STRG.29243.3,blat.proc3829885.chain_2398,blat.proc3829885.chain_2399,blat.proc3829885.chain_2401	6	blat.proc3829885.chain_2400	1
scaffold_11	spliced_intron	5525403	5525484	+	asmbl_5529	none	STRG.13614.1,blat.proc3829877.chain_2109	2	blat.proc3829877.chain_2108	1
scaffold_8	alternate_exon	17302311	17302777	-	asmbl_53454,asmbl_53455	none	STRG.10645.3,STRG.10645.4,blat.proc3829891.chain_2807	3	blat.proc3829891.chain_2804	1
scaffold_24	skipped_exon	6290670	6292064	+	asmbl_32304	none	STRG.26666.1,blat.proc3829883.chain_3521	2	blat.proc3829883.chain_3522	1
scaffold_85	alt_acceptor	3723	3724	-	asmbl_53689,asmbl_53691	none	STRG.30107.1,blat.proc3829901.chain_3204,blat.proc3829901.chain_3205	3	STRG.30107.2	1
scaffold_17	alt_acceptor	11037475	11037476	-	asmbl_19308,asmbl_19309,asmbl_19315	none	STRG.20653.3,STRG.20653.5,STRG.20653.6,blat.proc3829897.chain_1558,blat.proc3829897.chain_1562	5	STRG.20653.7,blat.proc3829897.chain_1559	2
scaffold_25	ends_in_intron	5561170	5561170	-	asmbl_34244	none	blat.proc3829901.chain_754	1	STRG.27439.1,STRG.27439.2	2
scaffold_6	retained_intron	18013760	18013851	-	asmbl_49158	none	blat.proc3829891.chain_780	1	STRG.8480.1,blat.proc3829891.chain_779,blat.proc3829891.chain_781	3
scaffold_28	starts_in_intron	5230820	5230820	-	asmbl_37584	none	blat.proc3829901.chain_2673	1	STRG.29650.1,Trinity_GG_33578_c0_g1_i9,blat.proc3829901.chain_2671,blat.proc3829901.chain_2672,blat.proc3829901.chain_2674	5
scaffold_9	ends_in_intron	15497137	15497137	-	asmbl_55501	none	blat.proc3829893.chain_119	1	STRG.11737.1,STRG.11737.3,STRG.11737.4,blat.proc3829893.chain_116,blat.proc3829893.chain_117,blat.proc3829893.chain_120	6
scaffold_13	spliced_intron	8951830	8951935	-	asmbl_9960,asmbl_9962	none	STRG.16152.1,blat.proc3829895.chain_931,blat.proc3829895.chain_933	3	blat.proc3829895.chain_932	1
scaffold_28	retained_intron	7234745	7235090	+	asmbl_38338	none	Trinity_GG_16492_c1_g1_i1,blat.proc3829885.chain_2857,blat.proc3829885.chain_2859	3	blat.proc3829885.chain_2856	1
scaffold_25	starts_in_intron	3296436	3296436	-	asmbl_34106,asmbl_34107,asmbl_34110	none	STRG.27260.1,STRG.27260.4,STRG.27260.5	3	STRG.27260.3	1
scaffold_4	alt_acceptor	4370419	4370420	+	asmbl_42566,asmbl_42568	none	STRG.4336.1,blat.proc3829873.chain_723,blat.proc3829873.chain_724	3	blat.proc3829873.chain_725	1
scaffold_9	alt_donor	5472580	5472581	+	asmbl_54030	none	STRG.11113.1,Trinity_GG_6198_c0_g1_i3,blat.proc3829875.chain_3611	3	STRG.11113.2	1
scaffold_7	retained_intron	6042675	6043363	-	asmbl_49722	none	STRG.8899.1,Trinity_GG_22045_c0_g1_i2,Trinity_GG_22045_c0_g1_i5,blat.proc3829891.chain_1182	4	STRG.8899.2,STRG.8899.4	2
scaffold_6	retained_exon	9151246	9151291	-	asmbl_48541,asmbl_48542	none	STRG.7783.3,blat.proc3829891.chain_45	2	STRG.7783.1,STRG.7783.2,blat.proc3829891.chain_44	3
scaffold_1	alternate_exon	5201623	5201769	+	asmbl_1702,asmbl_1704	none	STRG.323.1,blat.proc3829871.chain_396,blat.proc3829871.chain_399	3	STRG.323.2,blat.proc3829871.chain_398,blat.proc3829871.chain_400	3
scaffold_8	starts_in_intron	11275103	11275103	+	asmbl_52203	none	blat.proc3829875.chain_2816	1	STRG.10338.1,STRG.10338.2,Trinity_GG_5734_c0_g1_i1,Trinity_GG_5734_c0_g1_i2,blat.proc3829875.chain_2817,blat.proc3829875.chain_2818	6
scaffold_17	ends_in_intron	7024254	7024254	+	asmbl_18017	none	blat.proc3829881.chain_1162,blat.proc3829881.chain_1163	2	STRG.20355.1,STRG.20355.2	2
scaffold_26	retained_intron	5486047	5486534	+	asmbl_35527	none	Trinity_GG_15567_c0_g1_i4,blat.proc3829885.chain_1189	2	STRG.28241.4,Trinity_GG_15567_c0_g1_i6,blat.proc3829885.chain_1184	3
scaffold_2	retained_intron	5202056	5202363	+	asmbl_24427	none	STRG.1940.3,blat.proc3829871.chain_1967	2	STRG.1940.1,STRG.1940.2,Trinity_GG_1078_c0_g1_i1,Trinity_GG_1078_c0_g1_i2,Trinity_GG_1078_c0_g1_i3,Trinity_GG_1078_c0_g1_i5,blat.proc3829871.chain_1968,blat.proc3829871.chain_1969,blat.proc3829871.chain_1970,blat.proc3829871.chain_1971	10
scaffold_11	ends_in_intron	13085852	13085852	+	asmbl_5995	none	blat.proc3829877.chain_2644	1	STRG.14172.1,blat.proc3829877.chain_2643	2
scaffold_14	ends_in_intron	7353504	7353504	-	asmbl_13181	none	blat.proc3829895.chain_1777	1	STRG.17162.1	1
scaffold_5	retained_intron	8776863	8776953	-	asmbl_45625	none	Trinity_GG_20483_c0_g1_i1,blat.proc3829889.chain_2257	2	STRG.6208.1,blat.proc3829889.chain_2258	2
scaffold_24	starts_in_intron	6205495	6205495	+	asmbl_32298	none	blat.proc3829883.chain_3561	1	STRG.26660.1,blat.proc3829883.chain_3562	2
scaffold_1	starts_in_intron	922705	922705	+	asmbl_1439	none	Trinity_GG_8_c0_g1_i2,blat.proc3829871.chain_16	2	STRG.48.1,STRG.48.2,Trinity_GG_8_c0_g1_i3,Trinity_GG_8_c0_g1_i5,blat.proc3829871.chain_17,blat.proc3829871.chain_18	6
scaffold_4	alt_acceptor	11305438	11305439	+	asmbl_43036	none	STRG.4829.1,blat.proc3829873.chain_1147	2	STRG.4829.2	1
scaffold_6	spliced_intron	13574733	13575353	-	asmbl_48850,asmbl_48851,asmbl_48852	none	STRG.8093.2,STRG.8093.3,STRG.8093.4,blat.proc3829891.chain_414	4	Trinity_GG_21620_c1_g1_i1,Trinity_GG_21620_c1_g1_i4,blat.proc3829891.chain_415,blat.proc3829891.chain_416	4
scaffold_21	ends_in_intron	2481554	2481554	-	asmbl_27491,asmbl_27492,asmbl_27494	none	STRG.23859.2,STRG.23859.3,STRG.23859.4,Trinity_GG_30317_c1_g1_i1,blat.proc3829899.chain_951	5	STRG.23859.1,Trinity_GG_30317_c0_g1_i2,blat.proc3829899.chain_950	3
scaffold_701	alt_donor	4717	4718	-	asmbl_51553	none	STRG.30415.1,blat.proc3829901.chain_3452	2	STRG.30415.2,blat.proc3829901.chain_3453	2
scaffold_22	ends_in_intron	6947635	6947635	+	asmbl_29430	none	STRG.24996.2,blat.proc3829883.chain_2061	2	STRG.24996.3	1
scaffold_11	spliced_intron	11783168	11783654	+	asmbl_5962	none	STRG.14087.3	1	STRG.14087.4	1
scaffold_14	alternate_exon	15398198	15398228	-	asmbl_13704	none	STRG.17757.2,blat.proc3829895.chain_2486	2	STRG.17757.1,blat.proc3829895.chain_2485	2
scaffold_24	alt_acceptor	4836881	4836882	+	asmbl_32219	none	blat.proc3829883.chain_3441	1	STRG.26593.1,blat.proc3829883.chain_3440	2
scaffold_3	alternate_exon	14216004	14216144	-	asmbl_39289	none	STRG.3755.2	1	STRG.3755.1	1
scaffold_6	retained_intron	15944850	15945070	+	asmbl_47619	none	STRG.8316.1	1	STRG.8316.2	1
scaffold_9	spliced_intron	11843488	11843598	-	asmbl_55293,asmbl_55294,asmbl_55296,asmbl_55297,asmbl_55298,asmbl_55299	none	STRG.11491.1,blat.proc3829891.chain_3619,blat.proc3829891.chain_3620,blat.proc3829891.chain_3622,blat.proc3829891.chain_3623,blat.proc3829891.chain_3624,blat.proc3829891.chain_3625,blat.proc3829891.chain_3626	8	blat.proc3829891.chain_3621	1
scaffold_7	spliced_intron	4046121	4046335	-	asmbl_49661	none	STRG.8793.3,blat.proc3829891.chain_1137	2	STRG.8793.2,Trinity_GG_22021_c0_g1_i1,blat.proc3829891.chain_1136	3
scaffold_1	alternate_exon	7282641	7283527	-	asmbl_432	none	STRG.525.1,blat.proc3829887.chain_352	2	STRG.525.3,blat.proc3829887.chain_353	2
scaffold_24	alternate_exon	164343	165305	-	asmbl_32691	none	STRG.26299.1	1	STRG.26299.2,Trinity_GG_31713_c0_g1_i1,Trinity_GG_31713_c0_g1_i3,blat.proc3829899.chain_3374,blat.proc3829899.chain_3375	5
scaffold_1	ends_in_intron	8976827	8976827	-	asmbl_510	none	Trinity_GG_17332_c0_g1_i1,blat.proc3829887.chain_490	2	STRG.591.1,Trinity_GG_17332_c0_g1_i2,blat.proc3829887.chain_489	3
scaffold_52	spliced_intron	1701	1786	-	asmbl_46482,asmbl_46483	none	STRG.30037.1,STRG.30037.2,blat.proc3829901.chain_3148,blat.proc3829901.chain_3149	4	Trinity_GG_33859_c0_g1_i2,blat.proc3829901.chain_3146	2
scaffold_28	spliced_intron	5228162	5228281	-	asmbl_37583,asmbl_37585	none	STRG.29650.2,blat.proc3829901.chain_2672	2	blat.proc3829901.chain_2677	1
scaffold_15	ends_in_intron	2825064	2825064	-	asmbl_15064	none	blat.proc3829895.chain_2819	1	STRG.18059.1,STRG.18059.2,blat.proc3829895.chain_2816	3
scaffold_23	spliced_intron	6634496	6634635	+	asmbl_30928,asmbl_30930,asmbl_30931,asmbl_30933,asmbl_30934,asmbl_30935,asmbl_30936	none	STRG.25985.1,STRG.25985.2,blat.proc3829883.chain_2811,blat.proc3829883.chain_2812,blat.proc3829883.chain_2813,blat.proc3829883.chain_2814,blat.proc3829883.chain_2816,blat.proc3829883.chain_2817	8	blat.proc3829883.chain_2815	1
scaffold_15	spliced_intron	15409791	15409903	+	asmbl_14725	none	STRG.18921.9	1	STRG.18921.4,STRG.18921.6,blat.proc3829879.chain_3516	3
scaffold_10	alt_acceptor	9004231	9004232	+	asmbl_4628,asmbl_4631	none	STRG.12637.2,STRG.12637.4,blat.proc3829877.chain_1127	3	STRG.12637.1,STRG.12637.3	2
scaffold_2	starts_in_intron	11813782	11813782	+	asmbl_24812	none	Trinity_GG_1255_c0_g1_i2,blat.proc3829871.chain_2335	2	STRG.2282.1,STRG.2282.2,Trinity_GG_1255_c0_g1_i1,Trinity_GG_1255_c0_g1_i3,blat.proc3829871.chain_2336,blat.proc3829871.chain_2337	6
scaffold_3	spliced_intron	13833535	13833619	+	asmbl_40420	none	blat.proc3829873.chain_124	1	STRG.3723.1,blat.proc3829873.chain_125	2
scaffold_21	retained_intron	8295961	8296045	-	asmbl_27938	none	STRG.24358.1,blat.proc3829899.chain_1437	2	STRG.24358.2,blat.proc3829899.chain_1439	2
scaffold_4	alt_acceptor	19539846	19539847	-	asmbl_42201	none	STRG.5538.3	1	blat.proc3829889.chain_1601	1
scaffold_2	retained_exon	18949455	18949906	+	asmbl_25286,asmbl_25287,asmbl_25289	none	STRG.2768.1,STRG.2768.2,Trinity_GG_1522_c0_g1_i1,Trinity_GG_1522_c0_g1_i11,Trinity_GG_1522_c0_g1_i2,Trinity_GG_1522_c0_g1_i7	6	STRG.2768.3	1
scaffold_8	alternate_exon	9116225	9116267	-	asmbl_52996	none	STRG.10159.2	1	STRG.10159.1,blat.proc3829891.chain_2331,blat.proc3829891.chain_2332,blat.proc3829891.chain_2333	4
scaffold_1	retained_intron	6299428	6299676	-	asmbl_358	none	STRG.424.3	1	STRG.424.4	1
scaffold_6	alternate_exon	2851481	2851519	-	asmbl_48120	none	STRG.7274.3	1	STRG.7274.2	1
scaffold_5	alt_donor	9704463	9704464	-	asmbl_45680	none	blat.proc3829889.chain_2376	1	STRG.6283.2	1
scaffold_5	spliced_intron	12842021	12842175	+	asmbl_44496,asmbl_44498	none	STRG.6508.1,Trinity_GG_3545_c0_g1_i3,blat.proc3829873.chain_2643,blat.proc3829873.chain_2644	4	STRG.6508.2,STRG.6508.3	2
scaffold_2	ends_in_intron	7043315	7043315	+	asmbl_24552,asmbl_24554	none	Trinity_GG_1152_c0_g1_i1,Trinity_GG_1152_c0_g1_i2,blat.proc3829871.chain_2111,blat.proc3829871.chain_2113	4	STRG.2043.1,Trinity_GG_1152_c0_g1_i5,blat.proc3829871.chain_2110	3
scaffold_8	starts_in_intron	16488055	16488055	-	asmbl_53405	none	blat.proc3829891.chain_2775	1	STRG.10618.1,blat.proc3829891.chain_2774	2
scaffold_9	alt_acceptor	17791561	17791562	-	asmbl_55644,asmbl_55646	none	STRG.11857.1,Trinity_GG_23527_c0_g1_i2,blat.proc3829893.chain_163	3	STRG.11857.2,Trinity_GG_23527_c0_g1_i1,blat.proc3829893.chain_162	3
scaffold_6	alternate_exon	5265172	5265500	+	asmbl_46879	none	STRG.7492.2,blat.proc3829873.chain_3608	2	STRG.7492.1,STRG.7492.3,blat.proc3829873.chain_3609	3
scaffold_13	spliced_intron	16006876	16007020	-	asmbl_10228	none	STRG.16631.1	1	Trinity_GG_26307_c0_g1_i1,blat.proc3829895.chain_1312	2
scaffold_6	ends_in_intron	13357710	13357710	-	asmbl_48846	none	Trinity_GG_21582_c0_g1_i12,blat.proc3829891.chain_336	2	STRG.8087.1,STRG.8087.2,blat.proc3829891.chain_338,blat.proc3829891.chain_340,blat.proc3829891.chain_341	5
scaffold_24	spliced_intron	162380	162721	-	asmbl_32692	none	Trinity_GG_31713_c0_g1_i1,blat.proc3829899.chain_3375	2	STRG.26299.2,Trinity_GG_31713_c0_g1_i3,blat.proc3829899.chain_3374	3
scaffold_20	ends_in_intron	2765032	2765032	-	asmbl_26595	none	Trinity_GG_29850_c1_g1_i1,blat.proc3829899.chain_29	2	STRG.23004.4,STRG.23004.5,STRG.23004.6	3
scaffold_13	starts_in_intron	5551056	5551056	+	asmbl_10854	none	blat.proc3829879.chain_470,blat.proc3829879.chain_471	2	STRG.15842.1,blat.proc3829879.chain_472,blat.proc3829879.chain_473	3
scaffold_1	starts_in_intron	12811778	12811778	-	asmbl_779	none	blat.proc3829887.chain_807	1	STRG.902.1,blat.proc3829887.chain_806	2
scaffold_13	retained_intron	3734866	3734962	+	asmbl_10716	none	blat.proc3829879.chain_389	1	STRG.15686.1,STRG.15686.2,STRG.15686.3,Trinity_GG_8631_c0_g1_i4,Trinity_GG_8631_c0_g1_i6,Trinity_GG_8631_c0_g1_i8,blat.proc3829879.chain_390,blat.proc3829879.chain_393,blat.proc3829879.chain_394,blat.proc3829879.chain_395,blat.proc3829879.chain_396	11
scaffold_9	spliced_intron	634983	635016	+	asmbl_53757	none	STRG.10783.1	1	Trinity_GG_5954_c1_g1_i1,blat.proc3829875.chain_3223	2
scaffold_9	alternate_exon	5250058	5282500	+	asmbl_53993,asmbl_53994	none	STRG.11095.1,STRG.11095.3,Trinity_GG_6177_c0_g1_i1,Trinity_GG_6188_c3_g1_i1,blat.proc3829875.chain_3558,blat.proc3829875.chain_3586,blat.proc3829875.chain_3592	7	STRG.11095.2	1
scaffold_8	alternate_exon	6851279	6851309	-	asmbl_52885	none	STRG.10037.1,Trinity_GG_22614_c0_g1_i1,blat.proc3829891.chain_2189	3	STRG.10037.2	1
scaffold_3	starts_in_intron	2208740	2208740	-	asmbl_38693	none	STRG.3027.2,blat.proc3829887.chain_2819	2	STRG.3027.1,blat.proc3829887.chain_2821	2
scaffold_2	retained_intron	7895028	7895182	+	asmbl_24630	none	Trinity_GG_1187_c0_g1_i12,blat.proc3829871.chain_2190	2	Trinity_GG_1187_c0_g1_i17,blat.proc3829871.chain_2198	2
scaffold_13	alternate_exon	15510894	15512242	+	asmbl_11494	none	STRG.16580.4	1	STRG.16580.2	1
scaffold_8	spliced_intron	16230070	16230333	+	asmbl_52428,asmbl_52429	none	STRG.10606.1,STRG.10606.2,Trinity_GG_5907_c0_g1_i2,Trinity_GG_5907_c0_g1_i6,blat.proc3829875.chain_3128,blat.proc3829875.chain_3131	6	STRG.10606.3,Trinity_GG_5907_c0_g1_i3,blat.proc3829875.chain_3129	3
scaffold_27	alt_acceptor	937872	937873	-	asmbl_36675	none	STRG.28566.2	1	STRG.28566.1,Trinity_GG_32993_c0_g1_i1,blat.proc3829901.chain_1767	3
scaffold_5	alt_donor	12903820	12903821	+	asmbl_44504	none	STRG.6513.1,blat.proc3829873.chain_2572	2	STRG.6513.2	1
scaffold_14	retained_intron	1067639	1067750	+	asmbl_11764,asmbl_11765,asmbl_11766,asmbl_11768,asmbl_11772,asmbl_11773	none	STRG.16754.1,STRG.16754.3,STRG.16754.4,STRG.16754.5,blat.proc3829879.chain_1436,blat.proc3829879.chain_1442	6	STRG.16754.2,blat.proc3829879.chain_1439,blat.proc3829879.chain_1440,blat.proc3829879.chain_1441	4
scaffold_15	alt_acceptor	142575	142576	-	asmbl_14920	none	STRG.17865.2	1	STRG.17865.5,blat.proc3829895.chain_2599,blat.proc3829895.chain_2600	3
scaffold_6	alt_acceptor	12628272	12628273	-	asmbl_48769,asmbl_48770,asmbl_48771,asmbl_48773,asmbl_48774	none	STRG.8013.1,STRG.8013.2,Trinity_GG_21546_c0_g1_i1,Trinity_GG_21546_c0_g1_i2,blat.proc3829891.chain_252,blat.proc3829891.chain_253,blat.proc3829891.chain_254,blat.proc3829891.chain_256,blat.proc3829891.chain_257	9	blat.proc3829891.chain_255	1
scaffold_5	spliced_intron	8746681	8747979	+	asmbl_44226,asmbl_44227	none	STRG.6200.1,Trinity_GG_3381_c0_g1_i3,Trinity_GG_3381_c0_g1_i5,blat.proc3829873.chain_2338,blat.proc3829873.chain_2342	5	STRG.6200.2,blat.proc3829873.chain_2339	2
scaffold_25	alt_donor	9550383	9550384	+	asmbl_33821	none	STRG.27755.3	1	STRG.27755.1,blat.proc3829885.chain_777,blat.proc3829885.chain_779	3
scaffold_5	alt_acceptor	4696550	4696551	+	asmbl_43949,asmbl_43954	none	STRG.5917.4,blat.proc3829873.chain_2094	2	STRG.5917.2,STRG.5917.3,blat.proc3829873.chain_2093	3
scaffold_16	retained_intron	6534617	6536084	+	asmbl_17105,asmbl_17106	none	STRG.19359.1,Trinity_GG_10611_c0_g1_i1,Trinity_GG_10611_c0_g1_i3,Trinity_GG_10611_c0_g1_i4,blat.proc3829881.chain_250,blat.proc3829881.chain_251,blat.proc3829881.chain_252	7	STRG.19359.2	1
scaffold_3	starts_in_intron	9844650	9844650	-	asmbl_39026	none	blat.proc3829887.chain_3241	1	STRG.3457.1,blat.proc3829887.chain_3245	2
scaffold_8	ends_in_intron	17285008	17285008	-	asmbl_53451	none	Trinity_GG_22912_c5_g1_i1,blat.proc3829891.chain_2770	2	STRG.10643.1,blat.proc3829891.chain_2763,blat.proc3829891.chain_2764	3
scaffold_13	skipped_exon	11376844	11379297	-	asmbl_10054	none	STRG.16287.7	1	STRG.16287.1,STRG.16287.2,STRG.16287.3,STRG.16287.4,STRG.16287.5,STRG.16287.8,Trinity_GG_26140_c0_g1_i1,Trinity_GG_26140_c0_g1_i11,Trinity_GG_26140_c0_g1_i3,Trinity_GG_26140_c0_g1_i4,Trinity_GG_26140_c0_g1_i5,Trinity_GG_26140_c0_g1_i6,Trinity_GG_26140_c0_g1_i8,Trinity_GG_26140_c0_g1_i9,blat.proc3829895.chain_1024,blat.proc3829895.chain_1026,blat.proc3829895.chain_1028,blat.proc3829895.chain_1029,blat.proc3829895.chain_1031,blat.proc3829895.chain_1032,blat.proc3829895.chain_1033,blat.proc3829895.chain_1034	22
scaffold_2	retained_intron	1598188	1598295	+	asmbl_24236,asmbl_24237,asmbl_24238	none	STRG.1628.2,STRG.1628.3,STRG.1628.4	3	STRG.1628.1,blat.proc3829871.chain_1666,blat.proc3829871.chain_1667,blat.proc3829871.chain_1668,blat.proc3829871.chain_1669	5
scaffold_5	spliced_intron	6737990	6738085	-	asmbl_45524	none	STRG.6075.1	1	Trinity_GG_20424_c0_g1_i4,blat.proc3829889.chain_2156	2
scaffold_2	alt_donor	9190267	9190268	-	asmbl_23382	none	Trinity_GG_18242_c0_g1_i7,blat.proc3829887.chain_2104	2	STRG.2167.1,Trinity_GG_18242_c0_g1_i12,Trinity_GG_18242_c0_g1_i2,Trinity_GG_18242_c0_g1_i4,blat.proc3829887.chain_2101,blat.proc3829887.chain_2102,blat.proc3829887.chain_2103	7
scaffold_2	alt_donor	9300313	9300314	-	asmbl_23392	none	STRG.2178.1,Trinity_GG_18238_c0_g1_i2,blat.proc3829887.chain_2094	3	STRG.2178.2,Trinity_GG_18238_c0_g1_i1,blat.proc3829887.chain_2093	3
scaffold_14	retained_intron	3160065	3160251	+	asmbl_11895,asmbl_11896	none	blat.proc3829879.chain_1632,blat.proc3829879.chain_1635	2	STRG.16893.1,STRG.16893.2,STRG.16893.3,Trinity_GG_9302_c0_g1_i11,blat.proc3829879.chain_1625,blat.proc3829879.chain_1626,blat.proc3829879.chain_1627,blat.proc3829879.chain_1629,blat.proc3829879.chain_1630,blat.proc3829879.chain_1631,blat.proc3829879.chain_1633,blat.proc3829879.chain_1636,blat.proc3829879.chain_1638,blat.proc3829879.chain_1639,blat.proc3829879.chain_1640	15
scaffold_25	retained_intron	4442011	4442378	+	asmbl_33492,asmbl_33497	none	STRG.27356.1,STRG.27356.2,Trinity_GG_15095_c0_g1_i3,blat.proc3829885.chain_404	4	STRG.27356.4,Trinity_GG_15095_c0_g1_i2,blat.proc3829885.chain_403	3
scaffold_13	retained_exon	5813476	5813553	+	asmbl_10880	none	STRG.15880.1	1	STRG.15880.3,STRG.15880.4	2
scaffold_25	starts_in_intron	4539713	4539713	+	asmbl_33509	none	Trinity_GG_15099_c0_g1_i1,blat.proc3829885.chain_411	2	STRG.27374.1,blat.proc3829885.chain_414	2
scaffold_11	alt_donor	5139607	5139608	+	asmbl_5506	none	STRG.13589.2,Trinity_GG_7456_c0_g1_i1,blat.proc3829877.chain_2046	3	STRG.13589.1,Trinity_GG_7456_c0_g1_i2,blat.proc3829877.chain_2045	3
scaffold_1	starts_in_intron	12391762	12391762	+	asmbl_2185	none	Trinity_GG_521_c0_g1_i1,blat.proc3829871.chain_938	2	STRG.842.1,Trinity_GG_521_c0_g1_i2,blat.proc3829871.chain_937	3
scaffold_4	spliced_intron	6282645	6283128	-	asmbl_41407,asmbl_41408,asmbl_41409,asmbl_41413	none	STRG.4498.1,STRG.4498.2,Trinity_GG_19560_c0_g1_i1,Trinity_GG_19560_c0_g1_i6,Trinity_GG_19560_c0_g1_i9,blat.proc3829889.chain_662,blat.proc3829889.chain_663,blat.proc3829889.chain_666,blat.proc3829889.chain_668	9	Trinity_GG_19560_c0_g1_i2,blat.proc3829889.chain_665	2
scaffold_20	ends_in_intron	11482674	11482674	+	asmbl_26209,asmbl_26212,asmbl_26214	none	STRG.23639.1,STRG.23639.4,Trinity_GG_13053_c0_g1_i2,Trinity_GG_13053_c0_g1_i3,blat.proc3829883.chain_714,blat.proc3829883.chain_716	6	STRG.23639.2,STRG.23639.5,Trinity_GG_13053_c0_g1_i4,blat.proc3829883.chain_717	4
scaffold_9	ends_in_intron	8942267	8942267	-	asmbl_55118	none	blat.proc3829891.chain_3361	1	STRG.11268.1,STRG.11268.2,blat.proc3829891.chain_3362,blat.proc3829891.chain_3363	4
scaffold_4	alt_donor	1979723	1979724	+	asmbl_42479,asmbl_42480	none	STRG.4223.1,STRG.4223.2,blat.proc3829873.chain_579	3	STRG.4223.3	1
scaffold_13	spliced_intron	6396903	6397368	+	asmbl_10909,asmbl_10912,asmbl_10915	none	STRG.15914.1,STRG.15914.3,Trinity_GG_8718_c0_g1_i1,Trinity_GG_8718_c0_g1_i2,blat.proc3829879.chain_555,blat.proc3829879.chain_557	6	Trinity_GG_8718_c0_g1_i3,blat.proc3829879.chain_554	2
scaffold_9	alternate_exon	1649586	1650733	-	asmbl_54792	none	STRG.10844.1,blat.proc3829891.chain_2993	2	STRG.10844.2,blat.proc3829891.chain_2994	2
scaffold_1	retained_intron	907269	907398	-	asmbl_34	none	STRG.45.2	1	STRG.45.3	1
scaffold_6	retained_intron	3778396	3778632	+	asmbl_46797,asmbl_46798	none	STRG.7368.2,STRG.7368.4,blat.proc3829873.chain_3517,blat.proc3829873.chain_3519	4	STRG.7368.1,Trinity_GG_4054_c0_g1_i7,blat.proc3829873.chain_3516,blat.proc3829873.chain_3518	4
scaffold_2	retained_intron	8874291	8874378	+	asmbl_24689,asmbl_24691,asmbl_24692	none	STRG.2139.1,blat.proc3829871.chain_2259,blat.proc3829871.chain_2260	3	STRG.2139.2,STRG.2139.3,blat.proc3829871.chain_2261,blat.proc3829871.chain_2262	4
scaffold_3	alternate_exon	19803451	19803532	+	asmbl_40732	none	blat.proc3829873.chain_436	1	STRG.4094.2,STRG.4094.3	2
scaffold_18	alternate_exon	4762387	4768248	+	asmbl_20586	none	STRG.21260.4,Trinity_GG_11674_c0_g1_i2,blat.proc3829881.chain_2086	3	Trinity_GG_11674_c0_g2_i2,blat.proc3829881.chain_2091	2
scaffold_23	alternate_exon	4158579	4158645	+	asmbl_30790	none	STRG.25814.3	1	STRG.25814.1	1
scaffold_25	spliced_intron	7905410	7905469	-	asmbl_34386	none	blat.proc3829901.chain_904	1	STRG.27599.1	1
scaffold_13	alternate_exon	14180617	14180791	-	asmbl_10140	none	STRG.16447.1,blat.proc3829895.chain_1185	2	STRG.16447.2,blat.proc3829895.chain_1184	2
scaffold_10	alternate_exon	6018576	6018719	-	asmbl_3337	none	blat.proc3829893.chain_894	1	STRG.12424.2,blat.proc3829893.chain_895	2
scaffold_17	retained_intron	8319306	8319398	+	asmbl_18097	none	Trinity_GG_11211_c0_g1_i4,blat.proc3829881.chain_1248	2	STRG.20443.1,STRG.20443.2,STRG.20443.3,Trinity_GG_11211_c0_g1_i1,blat.proc3829881.chain_1249,blat.proc3829881.chain_1250,blat.proc3829881.chain_1251,blat.proc3829881.chain_1252,blat.proc3829881.chain_1253	9
scaffold_14	alternate_exon	15540359	15540616	+	asmbl_12601	none	Trinity_GG_9729_c0_g3_i1,blat.proc3829879.chain_2371	2	STRG.17778.1,Trinity_GG_9729_c0_g1_i2,blat.proc3829879.chain_2370	3
scaffold_5	alternate_exon	10307116	10307147	+	asmbl_44339	none	Trinity_GG_3454_c0_g1_i2,blat.proc3829873.chain_2478	2	STRG.6320.1,blat.proc3829873.chain_2475	2
scaffold_7	alternate_exon	15314720	15314875	-	asmbl_50187	none	STRG.9540.1,Trinity_GG_22371_c0_g2_i1,blat.proc3829891.chain_1776	3	STRG.9540.2,STRG.9540.3,blat.proc3829891.chain_1775	3
scaffold_3	starts_in_intron	14318763	14318763	-	asmbl_39306	none	blat.proc3829887.chain_3562	1	STRG.3769.1,STRG.3769.2,blat.proc3829887.chain_3561,blat.proc3829887.chain_3563	4
scaffold_9	starts_in_intron	16569376	16569376	+	asmbl_54572	none	Trinity_GG_6586_c0_g1_i6,blat.proc3829877.chain_553	2	STRG.11798.1,STRG.11798.2,Trinity_GG_6586_c0_g1_i10,Trinity_GG_6586_c0_g1_i14,Trinity_GG_6586_c0_g1_i15,Trinity_GG_6586_c0_g1_i21,Trinity_GG_6586_c0_g1_i23,Trinity_GG_6586_c0_g1_i5,blat.proc3829877.chain_551,blat.proc3829877.chain_552,blat.proc3829877.chain_554,blat.proc3829877.chain_555,blat.proc3829877.chain_556,blat.proc3829877.chain_557,blat.proc3829877.chain_558	15
scaffold_12	alt_acceptor	11951805	11951806	-	asmbl_7970	none	STRG.15095.1	1	STRG.15095.2	1
scaffold_22	alt_acceptor	1013479	1013480	-	asmbl_29903	none	STRG.24743.1,blat.proc3829899.chain_1857	2	STRG.24743.2,blat.proc3829899.chain_1858	2
scaffold_6	alt_donor	7937110	7937111	-	asmbl_48448,asmbl_48451,asmbl_48453	none	STRG.7666.2,STRG.7666.4,blat.proc3829889.chain_3704	3	STRG.7666.3	1
scaffold_21	spliced_intron	8295961	8296045	-	asmbl_27939	none	STRG.24358.2,blat.proc3829899.chain_1439	2	STRG.24358.1,blat.proc3829899.chain_1437	2
scaffold_10	retained_exon	13286680	13286774	-	asmbl_3775	none	blat.proc3829893.chain_1436	1	STRG.12910.2,STRG.12910.4,blat.proc3829893.chain_1433,blat.proc3829893.chain_1434,blat.proc3829893.chain_1435	5
scaffold_17	starts_in_intron	5688704	5688704	-	asmbl_18987	none	blat.proc3829897.chain_1167	1	STRG.20259.1,blat.proc3829897.chain_1166	2
scaffold_25	alt_donor	7338412	7338413	+	asmbl_33665	none	STRG.27571.3	1	STRG.27571.1,STRG.27571.2,Trinity_GG_15205_c0_g1_i3,blat.proc3829885.chain_597,blat.proc3829885.chain_598	5
scaffold_8	spliced_intron	12194719	12195488	-	asmbl_53185	none	STRG.10397.1,blat.proc3829891.chain_2520	2	Trinity_GG_22786_c1_g1_i1,blat.proc3829891.chain_2519,blat.proc3829891.chain_2521	3
scaffold_24	starts_in_intron	3663313	3663313	+	asmbl_32170	none	Trinity_GG_14613_c0_g1_i1,blat.proc3829883.chain_3344	2	STRG.26530.1,Trinity_GG_14613_c0_g1_i2,blat.proc3829883.chain_3346	3
scaffold_26	starts_in_intron	9850902	9850902	+	asmbl_35803	none	Trinity_GG_15782_c2_g1_i1,blat.proc3829885.chain_1569	2	STRG.28526.1,STRG.28526.2,STRG.28526.3,STRG.28526.5,blat.proc3829885.chain_1556,blat.proc3829885.chain_1557,blat.proc3829885.chain_1558,blat.proc3829885.chain_1559,blat.proc3829885.chain_1560,blat.proc3829885.chain_1561,blat.proc3829885.chain_1562,blat.proc3829885.chain_1563,blat.proc3829885.chain_1564,blat.proc3829885.chain_1565,blat.proc3829885.chain_1566,blat.proc3829885.chain_1567	16
scaffold_7	retained_intron	7493241	7494424	-	asmbl_49755	none	STRG.8995.1,blat.proc3829891.chain_1265	2	STRG.8995.2	1
scaffold_27	retained_intron	3872262	3872498	+	asmbl_36190,asmbl_36193	none	STRG.28827.3,STRG.28827.4,Trinity_GG_15976_c0_g2_i22,blat.proc3829885.chain_1964	4	blat.proc3829885.chain_1956	1
scaffold_15	skipped_exon	13558874	13561252	-	asmbl_15657,asmbl_15658	none	STRG.18782.1,STRG.18782.2,blat.proc3829895.chain_3524,blat.proc3829895.chain_3525	4	STRG.18782.3	1
scaffold_3	spliced_intron	4889563	4889668	+	asmbl_39998	none	blat.proc3829871.chain_3325	1	Trinity_GG_1775_c0_g1_i7,blat.proc3829871.chain_3326	2
scaffold_15	ends_in_intron	12619747	12619747	+	asmbl_14531	none	Trinity_GG_10271_c0_g1_i2,blat.proc3829879.chain_3313	2	STRG.18707.1,Trinity_GG_10271_c0_g1_i1,blat.proc3829879.chain_3314	3
scaffold_19	alt_donor	12812771	12812772	-	asmbl_21754	none	STRG.22587.1,blat.proc3829897.chain_3334	2	STRG.22587.2,Trinity_GG_29584_c0_g1_i2,blat.proc3829897.chain_3335	3
scaffold_2	alternate_exon	928208	928942	+	asmbl_24173,asmbl_24174	none	blat.proc3829871.chain_1534,blat.proc3829871.chain_1535	2	STRG.1569.1,STRG.1569.3,STRG.1569.4,blat.proc3829871.chain_1537,blat.proc3829871.chain_1542	5
scaffold_6	spliced_intron	18007958	18008258	-	asmbl_49155,asmbl_49158	none	STRG.8480.1,blat.proc3829891.chain_779,blat.proc3829891.chain_780	3	Trinity_GG_21834_c1_g1_i3,blat.proc3829891.chain_781,blat.proc3829891.chain_782	3
scaffold_2	retained_exon	9862236	9862343	-	asmbl_23409	none	STRG.2190.1,blat.proc3829887.chain_2112	2	STRG.2190.2	1
scaffold_1	ends_in_intron	6980045	6980045	+	asmbl_1868	none	blat.proc3829871.chain_558	1	STRG.499.1,STRG.499.2,blat.proc3829871.chain_556,blat.proc3829871.chain_559	4
scaffold_22	alternate_exon	11641500	11641612	-	asmbl_30458,asmbl_30460	none	STRG.25493.2,STRG.25493.4,blat.proc3829899.chain_2578	3	STRG.25493.3	1
scaffold_12	ends_in_intron	9987591	9987591	-	asmbl_7839,asmbl_7840	none	blat.proc3829893.chain_3345,blat.proc3829893.chain_3347	2	STRG.14957.3,blat.proc3829893.chain_3344	2
scaffold_11	skipped_exon	4859568	4861210	+	asmbl_5491	none	STRG.13572.1	1	STRG.13572.2,Trinity_GG_7459_c1_g1_i1,blat.proc3829877.chain_2049	3
scaffold_5	alternate_exon	6325521	6325653	+	asmbl_44084	none	STRG.6037.1	1	STRG.6037.3	1
scaffold_20	starts_in_intron	2221686	2221686	-	asmbl_26562	none	STRG.22945.1	1	STRG.22945.2	1
scaffold_27	skipped_exon	932171	933022	-	asmbl_36672	none	STRG.28569.3	1	STRG.28569.1,STRG.28569.2,blat.proc3829901.chain_1746,blat.proc3829901.chain_1747,blat.proc3829901.chain_1748	5
scaffold_23	spliced_intron	5340412	5340615	-	asmbl_31626,asmbl_31627,asmbl_31629,asmbl_31632	none	STRG.25890.1,STRG.25890.3,Trinity_GG_31478_c0_g1_i3,Trinity_GG_31478_c0_g1_i4,Trinity_GG_31478_c0_g1_i6,blat.proc3829899.chain_2977,blat.proc3829899.chain_2980,blat.proc3829899.chain_2981	8	STRG.25890.2,Trinity_GG_31478_c0_g1_i2,Trinity_GG_31478_c0_g1_i5,blat.proc3829899.chain_2978,blat.proc3829899.chain_2982	5
scaffold_3	ends_in_intron	2872876	2872876	+	asmbl_39879	none	blat.proc3829871.chain_3199	1	STRG.3044.1,blat.proc3829871.chain_3197	2
scaffold_4	alternate_exon	6941983	6948089	+	asmbl_42769,asmbl_42770	none	STRG.4536.2,blat.proc3829873.chain_901	2	Trinity_GG_2515_c0_g1_i7,blat.proc3829873.chain_902	2
scaffold_22	spliced_intron	26600	26679	+	asmbl_29091,asmbl_29093	none	STRG.24646.1,Trinity_GG_13608_c0_g1_i2,Trinity_GG_13608_c0_g1_i4,blat.proc3829883.chain_1665,blat.proc3829883.chain_1667	5	STRG.24646.2,Trinity_GG_13608_c0_g1_i1,blat.proc3829883.chain_1666	3
scaffold_52	alt_acceptor	2425	2426	-	asmbl_46482	none	STRG.30037.2,blat.proc3829901.chain_3148	2	STRG.30037.1,STRG.30037.3,Trinity_GG_33859_c0_g1_i2,blat.proc3829901.chain_3146,blat.proc3829901.chain_3149	5
scaffold_10	alt_acceptor	2721488	2721489	+	asmbl_4276,asmbl_4278,asmbl_4279	none	STRG.12081.1,STRG.12081.2,STRG.12081.3,Trinity_GG_6735_c0_g1_i4,blat.proc3829877.chain_814,blat.proc3829877.chain_816	6	STRG.12081.4,Trinity_GG_6735_c0_g1_i3,blat.proc3829877.chain_813	3
scaffold_3	retained_intron	13419144	13419481	-	asmbl_39212,asmbl_39213	none	STRG.3690.1,STRG.3690.3,Trinity_GG_19014_c0_g1_i4,blat.proc3829887.chain_3422	4	STRG.3690.4	1
scaffold_2	retained_intron	897724	898862	+	asmbl_24164,asmbl_24167,asmbl_24168	none	STRG.1568.2,Trinity_GG_900_c0_g1_i3,Trinity_GG_900_c0_g1_i6,blat.proc3829871.chain_1640,blat.proc3829871.chain_1643	5	STRG.1568.1,Trinity_GG_900_c0_g1_i4,Trinity_GG_900_c0_g1_i5,blat.proc3829871.chain_1642,blat.proc3829871.chain_1644	5
scaffold_10	spliced_intron	714718	715006	-	asmbl_2904,asmbl_2907	none	STRG.11948.1,STRG.11948.2,Trinity_GG_23680_c0_g1_i7,blat.proc3829893.chain_434	4	Trinity_GG_23680_c0_g1_i4,Trinity_GG_23680_c0_g1_i6,blat.proc3829893.chain_435,blat.proc3829893.chain_436,blat.proc3829893.chain_438	5
scaffold_3	alternate_exon	7587445	7592544	+	asmbl_40125,asmbl_40129	none	STRG.3345.1,blat.proc3829871.chain_3547,blat.proc3829871.chain_3548	3	Trinity_GG_1911_c0_g1_i2,blat.proc3829871.chain_3545	2
scaffold_7	skipped_exon	4930791	4933374	+	asmbl_50651,asmbl_50652,asmbl_50654,asmbl_50661,asmbl_50663	none	STRG.8834.1,blat.proc3829875.chain_1278,blat.proc3829875.chain_1279,blat.proc3829875.chain_1281,blat.proc3829875.chain_1283	5	STRG.8834.2,blat.proc3829875.chain_1275,blat.proc3829875.chain_1276,blat.proc3829875.chain_1280,blat.proc3829875.chain_1282	5
scaffold_13	alt_acceptor	11271461	11271462	-	asmbl_10038	none	STRG.16275.2	1	STRG.16275.1,blat.proc3829895.chain_1011	2
scaffold_3	starts_in_intron	3270321	3270321	-	asmbl_38718	none	blat.proc3829887.chain_2797	1	STRG.3088.1,STRG.3088.2,blat.proc3829887.chain_2794,blat.proc3829887.chain_2796	4
scaffold_7	spliced_intron	11413023	11413205	+	asmbl_51052	none	STRG.9275.1,Trinity_GG_5112_c0_g1_i4,blat.proc3829875.chain_1662,blat.proc3829875.chain_1664	4	STRG.9275.3,blat.proc3829875.chain_1663	2
scaffold_16	alt_donor	10448144	10448145	+	asmbl_17339	none	STRG.19602.5	1	STRG.19602.2,STRG.19602.4	2
scaffold_8	alt_acceptor	9155580	9155581	-	asmbl_53011	none	Trinity_GG_22667_c0_g1_i2,blat.proc3829891.chain_2287	2	STRG.10167.1,blat.proc3829891.chain_2286	2
scaffold_1	alt_acceptor	15122036	15122037	+	asmbl_2402	none	STRG.1085.3	1	STRG.1085.1,STRG.1085.2,blat.proc3829871.chain_1151,blat.proc3829871.chain_1152	4
scaffold_4	starts_in_intron	14106852	14106852	+	asmbl_43177,asmbl_43178,asmbl_43179	none	STRG.5033.2,STRG.5033.3,Trinity_GG_2801_c0_g1_i2,blat.proc3829873.chain_1347	4	STRG.5033.1	1
scaffold_10	retained_intron	12053237	12053342	+	asmbl_4797,asmbl_4799	none	STRG.12829.2,Trinity_GG_7040_c0_g1_i1,blat.proc3829877.chain_1340	3	STRG.12829.1,Trinity_GG_7040_c0_g1_i2	2
scaffold_6	spliced_intron	4535550	4536418	-	asmbl_48281	none	STRG.7428.1,blat.proc3829889.chain_3464	2	STRG.7428.2,STRG.7428.3,Trinity_GG_21203_c0_g1_i1,blat.proc3829889.chain_3463	4
scaffold_1	retained_intron	13890935	13891127	+	asmbl_2309	none	blat.proc3829871.chain_1084	1	STRG.994.1,STRG.994.2,blat.proc3829871.chain_1082,blat.proc3829871.chain_1086,blat.proc3829871.chain_1087	5
scaffold_11	alt_acceptor	13092868	13092869	+	asmbl_6005	none	STRG.14176.2,blat.proc3829877.chain_2673	2	STRG.14176.1,STRG.14176.3,blat.proc3829877.chain_2671,blat.proc3829877.chain_2672,blat.proc3829877.chain_2674,blat.proc3829877.chain_2678	6
scaffold_9	starts_in_intron	16654747	16654747	-	asmbl_55562	none	blat.proc3829893.chain_214	1	STRG.11803.1,STRG.11803.2,STRG.11803.3,STRG.11803.4,blat.proc3829893.chain_209,blat.proc3829893.chain_210,blat.proc3829893.chain_211,blat.proc3829893.chain_212,blat.proc3829893.chain_213	9
scaffold_6	starts_in_intron	12179720	12179720	+	asmbl_47317	none	blat.proc3829875.chain_371	1	STRG.7981.1,Trinity_GG_4366_c0_g1_i2,blat.proc3829875.chain_370	3
scaffold_4	alt_acceptor	12786765	12786766	+	asmbl_43083,asmbl_43084	none	STRG.4920.2,blat.proc3829873.chain_1273,blat.proc3829873.chain_1275	3	STRG.4920.1,STRG.4920.3	2
scaffold_20	alternate_exon	3261279	3265030	+	asmbl_25678	none	STRG.23041.1,blat.proc3829883.chain_149	2	STRG.23041.2	1
scaffold_22	retained_intron	485520	485567	+	asmbl_29151	none	blat.proc3829883.chain_1727	1	STRG.24679.2	1
scaffold_12	alt_acceptor	10605624	10605625	+	asmbl_8912	none	STRG.15020.1,blat.proc3829877.chain_3505	2	STRG.15020.4,blat.proc3829877.chain_3508	2
scaffold_6	retained_intron	11482302	11482747	+	asmbl_47263	none	STRG.7936.2,blat.proc3829875.chain_300	2	STRG.7936.4	1
scaffold_2	spliced_intron	17237710	17237871	-	asmbl_23732	none	STRG.2621.1,blat.proc3829887.chain_2462	2	Trinity_GG_18459_c0_g1_i2,blat.proc3829887.chain_2461	2
scaffold_5	spliced_intron	15766384	15766471	+	asmbl_44677,asmbl_44682,asmbl_44684,asmbl_44685	none	STRG.6763.1,blat.proc3829873.chain_2876,blat.proc3829873.chain_2877,blat.proc3829873.chain_2880,blat.proc3829873.chain_2882	5	Trinity_GG_3692_c0_g1_i6,blat.proc3829873.chain_2874,blat.proc3829873.chain_2875,blat.proc3829873.chain_2879	4
scaffold_7	spliced_intron	1440371	1440604	-	asmbl_49539	none	STRG.8631.1,blat.proc3829891.chain_1003	2	blat.proc3829891.chain_1002	1
scaffold_7	alternate_exon	2582647	2582685	+	asmbl_50535	none	STRG.8684.1	1	STRG.8684.2,Trinity_GG_4773_c0_g1_i1,blat.proc3829875.chain_1106	3
scaffold_8	alternate_exon	9281203	9281327	+	asmbl_52051	none	STRG.10179.1,blat.proc3829875.chain_2674	2	STRG.10179.2,blat.proc3829875.chain_2675	2
scaffold_22	ends_in_intron	11473409	11473409	+	asmbl_29678	none	Trinity_GG_14065_c0_g1_i2	1	STRG.25469.1,Trinity_GG_14065_c0_g1_i3,blat.proc3829883.chain_2406	3
scaffold_18	alternate_exon	2834126	2835247	+	asmbl_20455	none	blat.proc3829881.chain_1917	1	STRG.21133.1,STRG.21133.2,blat.proc3829881.chain_1915,blat.proc3829881.chain_1923	4
scaffold_18	alternate_exon	7238670	7241528	+	asmbl_20761	none	STRG.21440.2,blat.proc3829881.chain_2385	2	STRG.21440.3,Trinity_GG_11830_c1_g1_i1,blat.proc3829881.chain_2386	3
scaffold_3	starts_in_intron	3809452	3809452	+	asmbl_39936	none	Trinity_GG_1750_c0_g1_i2,blat.proc3829871.chain_3258	2	STRG.3099.1,blat.proc3829871.chain_3257	2
scaffold_17	spliced_intron	651449	651532	+	asmbl_17682	none	STRG.19898.1,Trinity_GG_10900_c0_g1_i2,blat.proc3829881.chain_734	3	STRG.19898.2,Trinity_GG_10900_c0_g1_i1,blat.proc3829881.chain_735	3
scaffold_8	alt_donor	3762036	3762037	+	asmbl_51787	none	STRG.9855.1	1	STRG.9855.2	1
scaffold_5	alt_acceptor	4686248	4686249	-	asmbl_45370,asmbl_45372,asmbl_45377,asmbl_45379,asmbl_45380,asmbl_45381,asmbl_45382	none	STRG.5919.1,STRG.5919.4,blat.proc3829889.chain_2027,blat.proc3829889.chain_2029,blat.proc3829889.chain_2030,blat.proc3829889.chain_2032,blat.proc3829889.chain_2033,blat.proc3829889.chain_2035	8	blat.proc3829889.chain_2026,blat.proc3829889.chain_2028	2
scaffold_16	alt_donor	7587406	7587407	-	asmbl_16363	none	STRG.19401.1,Trinity_GG_27862_c0_g1_i2,blat.proc3829897.chain_350	3	STRG.19401.2,Trinity_GG_27862_c0_g1_i1,blat.proc3829897.chain_351	3
scaffold_27	retained_intron	313987	314158	-	asmbl_36613,asmbl_36614	none	Trinity_GG_32948_c0_g1_i13,blat.proc3829901.chain_1673	2	STRG.28538.1,STRG.28538.2,STRG.28538.3	3
scaffold_2	alt_acceptor	16286022	16286023	+	asmbl_25137	none	STRG.2560.1,blat.proc3829871.chain_2742	2	STRG.2560.2,blat.proc3829871.chain_2743,blat.proc3829871.chain_2744	3
scaffold_5	retained_intron	10853360	10853477	+	asmbl_44369,asmbl_44373	none	STRG.6350.4,blat.proc3829873.chain_2514	2	STRG.6350.1,STRG.6350.3,blat.proc3829873.chain_2512,blat.proc3829873.chain_2513,blat.proc3829873.chain_2515,blat.proc3829873.chain_2516	6
scaffold_11	starts_in_intron	5560328	5560328	+	asmbl_5533	none	Trinity_GG_7509_c0_g1_i1,blat.proc3829877.chain_2127	2	STRG.13617.1	1
scaffold_4	alt_donor	4414707	4414708	+	asmbl_42571,asmbl_42574,asmbl_42576,asmbl_42583,asmbl_42585,asmbl_42586	none	STRG.4344.3,Trinity_GG_2404_c0_g1_i19,Trinity_GG_2404_c0_g1_i5,Trinity_GG_2404_c0_g1_i8,blat.proc3829873.chain_681,blat.proc3829873.chain_687,blat.proc3829873.chain_688,blat.proc3829873.chain_689,blat.proc3829873.chain_694,blat.proc3829873.chain_695,blat.proc3829873.chain_696	11	STRG.4344.1,STRG.4344.4,Trinity_GG_2404_c0_g1_i14,blat.proc3829873.chain_682,blat.proc3829873.chain_692,blat.proc3829873.chain_697	6
scaffold_6	starts_in_intron	1091739	1091739	+	asmbl_46640	none	blat.proc3829873.chain_3314	1	STRG.7163.1,blat.proc3829873.chain_3316	2
scaffold_6	spliced_intron	17886425	17886621	+	asmbl_47736	none	STRG.8475.3,Trinity_GG_4642_c0_g1_i1,blat.proc3829875.chain_827	3	STRG.8475.2,Trinity_GG_4642_c0_g1_i4,blat.proc3829875.chain_830	3
scaffold_12	starts_in_intron	8820644	8820644	+	asmbl_8795	none	Trinity_GG_8235_c0_g1_i2,blat.proc3829877.chain_3399	2	STRG.14875.1,Trinity_GG_8235_c0_g1_i4,Trinity_GG_8235_c0_g1_i5,Trinity_GG_8235_c0_g1_i6,blat.proc3829877.chain_3397,blat.proc3829877.chain_3398,blat.proc3829877.chain_3400	7
scaffold_7	spliced_intron	12058955	12059038	+	asmbl_51089,asmbl_51091	none	STRG.9294.1,Trinity_GG_5143_c0_g1_i2,blat.proc3829875.chain_1722,blat.proc3829875.chain_1723	4	Trinity_GG_5143_c0_g1_i8,blat.proc3829875.chain_1724	2
scaffold_23	ends_in_intron	5338587	5338587	-	asmbl_31629,asmbl_31630,asmbl_31632	none	STRG.25890.3,Trinity_GG_31478_c0_g1_i2,Trinity_GG_31478_c0_g1_i3,blat.proc3829899.chain_2977,blat.proc3829899.chain_2978	5	STRG.25890.1,STRG.25890.2,Trinity_GG_31478_c0_g1_i4,Trinity_GG_31478_c0_g1_i5,Trinity_GG_31478_c0_g1_i6,blat.proc3829899.chain_2980,blat.proc3829899.chain_2981,blat.proc3829899.chain_2982	8
scaffold_25	spliced_intron	6066072	6066195	-	asmbl_34287,asmbl_34291,asmbl_34292,asmbl_34294	none	STRG.27475.1,blat.proc3829901.chain_716,blat.proc3829901.chain_718,blat.proc3829901.chain_721,blat.proc3829901.chain_722	5	blat.proc3829901.chain_719	1
scaffold_2	spliced_intron	13397328	13397546	+	asmbl_24874,asmbl_24878,asmbl_24879	none	STRG.2357.2,STRG.2357.3,blat.proc3829871.chain_2407,blat.proc3829871.chain_2410	4	STRG.2357.1,Trinity_GG_1292_c0_g1_i3,blat.proc3829871.chain_2405,blat.proc3829871.chain_2406,blat.proc3829871.chain_2408	5
scaffold_1	starts_in_intron	1240001	1240001	+	asmbl_1465	none	Trinity_GG_45_c1_g1_i1,blat.proc3829871.chain_88	2	STRG.69.1,blat.proc3829871.chain_89	2
scaffold_14	skipped_exon	4781390	4782208	-	asmbl_13055	none	STRG.16995.3	1	STRG.16995.1,STRG.16995.2,STRG.16995.4,blat.proc3829895.chain_1702,blat.proc3829895.chain_1703	5
scaffold_5	starts_in_intron	11554350	11554350	+	asmbl_44420	none	Trinity_GG_3490_c0_g1_i2,blat.proc3829873.chain_2549	2	STRG.6408.1,blat.proc3829873.chain_2548	2
scaffold_15	ends_in_intron	12597979	12597979	-	asmbl_15607,asmbl_15609	none	blat.proc3829895.chain_3477,blat.proc3829895.chain_3480	2	STRG.18702.1,Trinity_GG_27520_c0_g1_i3,Trinity_GG_27520_c0_g1_i5,blat.proc3829895.chain_3478,blat.proc3829895.chain_3481	5
scaffold_20	starts_in_intron	6547587	6547587	+	asmbl_25814	none	STRG.23221.1	1	blat.proc3829883.chain_331	1
scaffold_26	starts_in_intron	9314684	9314684	+	asmbl_35740	none	blat.proc3829885.chain_1516	1	STRG.28479.1,STRG.28479.2,STRG.28479.3,blat.proc3829885.chain_1513,blat.proc3829885.chain_1514,blat.proc3829885.chain_1519	6
scaffold_17	starts_in_intron	4696288	4696288	+	asmbl_17920	none	blat.proc3829881.chain_957	1	STRG.20195.1,STRG.20195.2	2
scaffold_15	starts_in_intron	1708162	1708162	+	asmbl_13974,asmbl_13977	none	STRG.17968.2,blat.proc3829879.chain_2610,blat.proc3829879.chain_2614	3	STRG.17968.1,blat.proc3829879.chain_2611,blat.proc3829879.chain_2612	3
scaffold_4	ends_in_intron	6136273	6136273	-	asmbl_41397	none	STRG.4484.2,blat.proc3829889.chain_599	2	STRG.4484.1	1
scaffold_21	retained_intron	5532922	5533006	-	asmbl_27696	none	blat.proc3829899.chain_1090	1	STRG.24071.2	1
scaffold_14	starts_in_intron	13879730	13879730	+	asmbl_12493,asmbl_12494	none	blat.proc3829879.chain_2323,blat.proc3829879.chain_2325	2	STRG.17650.1,blat.proc3829879.chain_2324	2
scaffold_17	ends_in_intron	2635084	2635084	+	asmbl_17802	none	blat.proc3829881.chain_877	1	STRG.20044.4,blat.proc3829881.chain_876	2
scaffold_27	alt_donor	1090741	1090742	+	asmbl_35948	none	STRG.28588.2,blat.proc3829885.chain_1644	2	STRG.28588.1,STRG.28588.3,blat.proc3829885.chain_1642	3
scaffold_26	retained_intron	9420301	9420411	-	asmbl_35050	none	Trinity_GG_32921_c0_g1_i1,blat.proc3829901.chain_1607	2	STRG.28476.1	1
scaffold_12	alt_donor	7172893	7172894	+	asmbl_8685	none	blat.proc3829877.chain_3240	1	STRG.14775.1	1
scaffold_14	ends_in_intron	12713585	12713585	-	asmbl_13578	none	Trinity_GG_26884_c0_g1_i1,blat.proc3829895.chain_2298	2	STRG.17567.1,Trinity_GG_26884_c0_g1_i2,blat.proc3829895.chain_2299	3
scaffold_6	starts_in_intron	3349560	3349560	+	asmbl_46783	none	STRG.7336.2	1	STRG.7336.1	1
scaffold_7	starts_in_intron	7481830	7481830	+	asmbl_50817	none	blat.proc3829875.chain_1442	1	STRG.8991.1,blat.proc3829875.chain_1443	2
scaffold_9	alt_acceptor	15590630	15590631	+	asmbl_54554,asmbl_54558	none	STRG.11739.1,blat.proc3829877.chain_497,blat.proc3829877.chain_499	3	blat.proc3829877.chain_496,blat.proc3829877.chain_498,blat.proc3829877.chain_500,blat.proc3829877.chain_501	4
scaffold_18	alt_acceptor	13654103	13654104	-	asmbl_20207	none	STRG.21788.2	1	STRG.21788.1,blat.proc3829897.chain_2559,blat.proc3829897.chain_2560	3
scaffold_28	alt_acceptor	3167285	3167286	+	asmbl_38144	none	STRG.29506.1	1	STRG.29506.2	1
scaffold_14	spliced_intron	6987427	6987843	-	asmbl_13155	none	STRG.17122.1,blat.proc3829895.chain_1833	2	blat.proc3829895.chain_1835	1
scaffold_2	ends_in_intron	11448539	11448539	+	asmbl_24787	none	Trinity_GG_1269_c0_g1_i6,blat.proc3829871.chain_2358	2	STRG.2257.1	1
scaffold_10	retained_exon	5010325	5010429	-	asmbl_3251	none	blat.proc3829893.chain_749	1	STRG.12317.2,blat.proc3829893.chain_747	2
scaffold_21	retained_intron	5183291	5183495	+	asmbl_28576	none	Trinity_GG_13320_c0_g1_i2,blat.proc3829883.chain_1187	2	STRG.24039.1,Trinity_GG_13320_c0_g1_i1,blat.proc3829883.chain_1186	3
scaffold_8	retained_intron	9465823	9465961	-	asmbl_53032,asmbl_53036	none	blat.proc3829891.chain_2400,blat.proc3829891.chain_2408	2	STRG.10197.1,blat.proc3829891.chain_2403,blat.proc3829891.chain_2405,blat.proc3829891.chain_2406,blat.proc3829891.chain_2407	5
scaffold_8	starts_in_intron	2851438	2851438	-	asmbl_52712	none	blat.proc3829891.chain_1946	1	STRG.9800.1,blat.proc3829891.chain_1947,blat.proc3829891.chain_1948	3
scaffold_2	starts_in_intron	6900109	6900109	+	asmbl_24530,asmbl_24539	none	STRG.2036.5,STRG.2036.6,Trinity_GG_1103_c0_g1_i2,blat.proc3829871.chain_2020	4	STRG.2036.1,STRG.2036.2,STRG.2036.3,STRG.2036.4,blat.proc3829871.chain_2015,blat.proc3829871.chain_2016,blat.proc3829871.chain_2018,blat.proc3829871.chain_2019,blat.proc3829871.chain_2022	9
scaffold_1	spliced_intron	12334369	12334524	-	asmbl_722	none	blat.proc3829887.chain_739	1	STRG.843.2,blat.proc3829887.chain_737,blat.proc3829887.chain_741,blat.proc3829887.chain_743,blat.proc3829887.chain_746	5
scaffold_14	alternate_exon	201289	209002	-	asmbl_12779	none	STRG.16702.3,Trinity_GG_26362_c0_g1_i5,blat.proc3829895.chain_1405,blat.proc3829895.chain_1406	4	STRG.16702.6	1
scaffold_12	alternate_exon	7413134	7413356	-	asmbl_7708	none	STRG.14815.1,blat.proc3829893.chain_3183	2	STRG.14815.3,blat.proc3829893.chain_3182	2
scaffold_19	spliced_intron	13155142	13155525	-	asmbl_21825	none	blat.proc3829897.chain_3408	1	STRG.22626.2,STRG.22626.3,blat.proc3829897.chain_3410	3
scaffold_19	skipped_exon	12957723	12958376	-	asmbl_21775,asmbl_21777	none	Trinity_GG_29572_c0_g1_i6,Trinity_GG_29572_c0_g1_i7,blat.proc3829897.chain_3292,blat.proc3829897.chain_3295	4	STRG.22600.1	1
scaffold_6	alt_acceptor	2864361	2864362	+	asmbl_46725	none	STRG.7272.2	1	STRG.7272.1,STRG.7272.3,Trinity_GG_4000_c1_g1_i1,blat.proc3829873.chain_3408	4
scaffold_8	retained_intron	18573669	18573909	-	asmbl_53568	none	STRG.10747.1,Trinity_GG_22963_c0_g1_i1,blat.proc3829891.chain_2880	3	STRG.10747.2,STRG.10747.3,Trinity_GG_22963_c0_g1_i4,blat.proc3829891.chain_2881	4
scaffold_17	alt_donor	9994241	9994242	+	asmbl_18273,asmbl_18275	none	STRG.20601.1,STRG.20601.2,blat.proc3829881.chain_1435	3	blat.proc3829881.chain_1436	1
scaffold_28	starts_in_intron	7155362	7155362	+	asmbl_38329	none	STRG.29751.3,Trinity_GG_16490_c0_g1_i7,blat.proc3829885.chain_2851	3	STRG.29751.1,STRG.29751.2,blat.proc3829885.chain_2849,blat.proc3829885.chain_2850,blat.proc3829885.chain_2852,blat.proc3829885.chain_2853	6
scaffold_9	spliced_intron	3375064	3375256	+	asmbl_53872,asmbl_53875	none	STRG.10936.1,blat.proc3829875.chain_3401,blat.proc3829875.chain_3402	3	blat.proc3829875.chain_3399	1
scaffold_27	retained_intron	4961885	4961915	+	asmbl_36292	none	Trinity_GG_16012_c0_g1_i1	1	STRG.28911.1	1
scaffold_8	retained_intron	9112712	9112870	-	asmbl_52995	none	blat.proc3829891.chain_2333	1	STRG.10159.1,STRG.10159.2,blat.proc3829891.chain_2331,blat.proc3829891.chain_2332	4
scaffold_6	alt_donor	4129233	4129234	-	asmbl_48230	none	STRG.7384.2,blat.proc3829889.chain_3413	2	STRG.7384.3	1
scaffold_9	alternate_exon	3663744	3663797	+	asmbl_53887	none	STRG.10962.1,Trinity_GG_6100_c0_g1_i3,blat.proc3829875.chain_3440	3	STRG.10962.3	1
scaffold_14	alternate_exon	12630087	12634625	-	asmbl_13565,asmbl_13569,asmbl_13570	none	STRG.17566.3,blat.proc3829895.chain_2330,blat.proc3829895.chain_2332,blat.proc3829895.chain_2333	4	STRG.17566.2,Trinity_GG_26902_c0_g1_i2,blat.proc3829895.chain_2325,blat.proc3829895.chain_2328	4
scaffold_7	skipped_exon	5482741	5484064	+	asmbl_50698	none	STRG.8872.1,blat.proc3829875.chain_1291	2	STRG.8872.2	1
scaffold_1	alt_acceptor	5962642	5962643	-	asmbl_310	none	blat.proc3829887.chain_270	1	STRG.395.1,blat.proc3829887.chain_271	2
scaffold_2	spliced_intron	7776424	7777128	+	asmbl_24602	none	STRG.2073.1,Trinity_GG_1175_c0_g1_i1,blat.proc3829871.chain_2158	3	Trinity_GG_1175_c0_g1_i2,blat.proc3829871.chain_2157	2
scaffold_9	starts_in_intron	15495850	15495850	-	asmbl_55498	none	blat.proc3829893.chain_115	1	STRG.11737.1,STRG.11737.3,blat.proc3829893.chain_117,blat.proc3829893.chain_120	4
scaffold_27	alt_donor	5653931	5653932	+	asmbl_36307,asmbl_36309	none	STRG.28952.1,STRG.28952.2,blat.proc3829885.chain_2031,blat.proc3829885.chain_2032	4	STRG.28952.3	1
scaffold_25	retained_intron	5382118	5382521	-	asmbl_34234	none	STRG.27428.1,Trinity_GG_32378_c0_g1_i2,blat.proc3829901.chain_732	3	STRG.27428.2,Trinity_GG_32378_c0_g1_i1,blat.proc3829901.chain_731	3
scaffold_25	retained_intron	4441939	4442378	+	asmbl_33492,asmbl_33497	none	STRG.27356.1,STRG.27356.2,Trinity_GG_15095_c0_g1_i3,blat.proc3829885.chain_404	4	STRG.27356.3,Trinity_GG_15095_c0_g1_i1,blat.proc3829885.chain_405	3
scaffold_24	spliced_intron	6432265	6432478	-	asmbl_32947	none	STRG.26677.1,blat.proc3829899.chain_3722	2	blat.proc3829899.chain_3723	1
scaffold_18	starts_in_intron	816828	816828	+	asmbl_20346	none	Trinity_GG_11553_c0_g1_i7,blat.proc3829881.chain_1866	2	STRG.20995.1,blat.proc3829881.chain_1864,blat.proc3829881.chain_1865,blat.proc3829881.chain_1867,blat.proc3829881.chain_1868,blat.proc3829881.chain_1869	6
scaffold_14	starts_in_intron	9986093	9986093	+	asmbl_12287	none	blat.proc3829879.chain_2043	1	STRG.17354.1	1
scaffold_6	retained_intron	3778731	3778944	+	asmbl_46796,asmbl_46797,asmbl_46798	none	STRG.7368.2,STRG.7368.4,Trinity_GG_4054_c0_g1_i7,blat.proc3829873.chain_3517,blat.proc3829873.chain_3518,blat.proc3829873.chain_3519	6	STRG.7368.1,blat.proc3829873.chain_3516	2
scaffold_2	alt_acceptor	14537011	14537012	+	asmbl_24973,asmbl_24975	none	STRG.2452.2,STRG.2452.3,blat.proc3829871.chain_2647	3	STRG.2452.1,blat.proc3829871.chain_2648	2
scaffold_23	alt_acceptor	5578416	5578417	+	asmbl_30876,asmbl_30877,asmbl_30878	none	STRG.25909.2,STRG.25909.3,blat.proc3829883.chain_2798,blat.proc3829883.chain_2799,blat.proc3829883.chain_2802	5	STRG.25909.1,blat.proc3829883.chain_2801,blat.proc3829883.chain_2803	3
scaffold_7	alt_acceptor	12082575	12082576	+	asmbl_51098,asmbl_51099	none	STRG.9310.2,Trinity_GG_5111_c0_g1_i3,blat.proc3829875.chain_1657	3	STRG.9310.1,STRG.9310.3,Trinity_GG_5111_c0_g1_i1,blat.proc3829875.chain_1658	4
scaffold_4	retained_exon	7151071	7151103	+	asmbl_42803	none	STRG.4558.3	1	STRG.4558.2,STRG.4558.4,blat.proc3829873.chain_883,blat.proc3829873.chain_884	4
scaffold_24	starts_in_intron	6083570	6083570	-	asmbl_32912	none	blat.proc3829899.chain_3665	1	STRG.26654.2	1
scaffold_1	alternate_exon	14076352	14077631	+	asmbl_2316	none	blat.proc3829871.chain_1103	1	STRG.999.1,Trinity_GG_614_c0_g1_i3,Trinity_GG_614_c0_g1_i4,blat.proc3829871.chain_1100,blat.proc3829871.chain_1102	5
scaffold_10	starts_in_intron	17156129	17156129	-	asmbl_3939	none	blat.proc3829893.chain_1645	1	STRG.13151.1,STRG.13151.2,blat.proc3829893.chain_1643,blat.proc3829893.chain_1644	4
scaffold_8	retained_intron	8555730	8555811	-	asmbl_52953	none	blat.proc3829891.chain_2303	1	STRG.10106.1,blat.proc3829891.chain_2300,blat.proc3829891.chain_2301,blat.proc3829891.chain_2302	4
scaffold_9	spliced_intron	11815672	11815756	+	asmbl_54366	none	STRG.11485.1,Trinity_GG_6411_c0_g2_i1,blat.proc3829877.chain_265	3	Trinity_GG_6411_c0_g2_i2,blat.proc3829877.chain_264	2
scaffold_6	retained_intron	13919016	13919162	-	asmbl_48895,asmbl_48898	none	STRG.8132.1,blat.proc3829891.chain_439,blat.proc3829891.chain_440	3	STRG.8132.3	1
scaffold_5	skipped_exon	1227975	1228566	-	asmbl_45232	none	STRG.5671.2	1	STRG.5671.1,blat.proc3829889.chain_1825	2
scaffold_25	starts_in_intron	8894921	8894921	+	asmbl_33760	none	STRG.27688.2,blat.proc3829885.chain_666	2	STRG.27688.1,Trinity_GG_15255_c0_g1_i2,blat.proc3829885.chain_665	3
scaffold_21	skipped_exon	8538516	8539657	-	asmbl_27952	none	blat.proc3829899.chain_1398	1	STRG.24364.1,STRG.24364.2,STRG.24364.3,blat.proc3829899.chain_1396,blat.proc3829899.chain_1397,blat.proc3829899.chain_1399,blat.proc3829899.chain_1584	7
scaffold_5	retained_exon	824518	824592	+	asmbl_43766	none	STRG.5632.1	1	STRG.5632.2,STRG.5632.3	2
scaffold_24	retained_exon	9592301	9592398	-	asmbl_33129	none	STRG.26924.2	1	STRG.26924.3	1
scaffold_5	alternate_exon	8134726	8134923	+	asmbl_44196	none	STRG.6171.1,blat.proc3829873.chain_2334	2	STRG.6171.3,blat.proc3829873.chain_2333	2
scaffold_723	skipped_exon	1831	2666	-	asmbl_51572,asmbl_51574	none	STRG.30418.2,blat.proc3829901.chain_3461	2	STRG.30418.1,blat.proc3829901.chain_3463,blat.proc3829901.chain_3464	3
scaffold_12	alternate_exon	2919163	2926726	-	asmbl_7465	none	STRG.14515.1,Trinity_GG_25131_c1_g1_i1,blat.proc3829893.chain_2936,blat.proc3829893.chain_2939	4	STRG.14515.6	1
scaffold_2	alt_donor	14276385	14276386	+	asmbl_24927,asmbl_24929,asmbl_24932,asmbl_24934	none	STRG.2425.3,blat.proc3829871.chain_2541,blat.proc3829871.chain_2542,blat.proc3829871.chain_2543	4	STRG.2425.2	1
scaffold_21	starts_in_intron	7383749	7383749	+	asmbl_28746	none	blat.proc3829883.chain_1366	1	STRG.24245.1,blat.proc3829883.chain_1367	2
scaffold_2	skipped_exon	5706615	5707568	-	asmbl_23181	none	STRG.1957.2,blat.proc3829887.chain_1852	2	blat.proc3829887.chain_1853	1
scaffold_21	retained_intron	1654469	1654866	+	asmbl_28370,asmbl_28371	none	Trinity_GG_13211_c0_g1_i3,Trinity_GG_13211_c0_g1_i7,blat.proc3829883.chain_989,blat.proc3829883.chain_992	4	STRG.23807.1,Trinity_GG_13211_c0_g1_i2,Trinity_GG_13211_c0_g1_i6,blat.proc3829883.chain_988,blat.proc3829883.chain_990	5
scaffold_22	alternate_exon	8189260	8192811	-	asmbl_30221	none	STRG.25152.1,blat.proc3829899.chain_2243	2	STRG.25152.2	1
scaffold_19	retained_intron	13003307	13003408	+	asmbl_22645	none	Trinity_GG_12510_c0_g1_i10,blat.proc3829881.chain_3583	2	STRG.22609.1,STRG.22609.2,Trinity_GG_12510_c0_g1_i1,Trinity_GG_12510_c0_g1_i14,Trinity_GG_12510_c0_g1_i5,blat.proc3829881.chain_3576,blat.proc3829881.chain_3581,blat.proc3829881.chain_3585	8
scaffold_4	retained_intron	4417120	4417266	+	asmbl_42574,asmbl_42575,asmbl_42590,asmbl_42593	none	Trinity_GG_2404_c0_g1_i10,Trinity_GG_2404_c0_g1_i19,blat.proc3829873.chain_685,blat.proc3829873.chain_687,blat.proc3829873.chain_690,blat.proc3829873.chain_697	6	STRG.4344.1,STRG.4344.2,STRG.4344.3,STRG.4344.4,Trinity_GG_2404_c0_g1_i5,Trinity_GG_2404_c0_g1_i8,blat.proc3829873.chain_680,blat.proc3829873.chain_681,blat.proc3829873.chain_682,blat.proc3829873.chain_683,blat.proc3829873.chain_686,blat.proc3829873.chain_689,blat.proc3829873.chain_691,blat.proc3829873.chain_695,blat.proc3829873.chain_696,blat.proc3829873.chain_698	16
scaffold_6	alternate_exon	14177226	14177355	-	asmbl_48928	none	blat.proc3829891.chain_511	1	STRG.8173.1,STRG.8173.2,blat.proc3829891.chain_508,blat.proc3829891.chain_509,blat.proc3829891.chain_510	5
scaffold_22	alt_donor	6123576	6123577	+	asmbl_29391,asmbl_29395	none	STRG.24955.2,blat.proc3829883.chain_2002	2	STRG.24955.1,blat.proc3829883.chain_1996	2
scaffold_22	spliced_intron	7891905	7892011	-	asmbl_30199,asmbl_30201	none	STRG.25122.1,blat.proc3829899.chain_2221	2	STRG.25122.2,blat.proc3829899.chain_2219	2
scaffold_19	retained_intron	3684557	3684940	+	asmbl_22131	none	STRG.22046.8,blat.proc3829881.chain_3002	2	STRG.22046.2,STRG.22046.3,STRG.22046.4,blat.proc3829881.chain_3004	4
scaffold_6	retained_exon	13908796	13908858	-	asmbl_48890	none	STRG.8134.1,blat.proc3829891.chain_364	2	STRG.8134.2	1
scaffold_21	spliced_intron	457059	457190	-	asmbl_27350	none	STRG.23726.1,blat.proc3829899.chain_765	2	blat.proc3829899.chain_763,blat.proc3829899.chain_766	2
scaffold_6	spliced_intron	10898864	10899075	+	asmbl_47240,asmbl_47241,asmbl_47244	none	STRG.7901.1,STRG.7901.2,Trinity_GG_4335_c0_g1_i1,blat.proc3829875.chain_288,blat.proc3829875.chain_290,blat.proc3829875.chain_292	6	Trinity_GG_4335_c0_g1_i5,blat.proc3829875.chain_289	2
scaffold_18	ends_in_intron	3580245	3580245	+	asmbl_20484	none	blat.proc3829881.chain_2037	1	STRG.21163.1,Trinity_GG_11647_c0_g1_i1,blat.proc3829881.chain_2038	3
scaffold_6	alternate_exon	12990049	12998579	-	asmbl_48792,asmbl_48793,asmbl_48794,asmbl_48797	none	STRG.8061.1,STRG.8061.2,STRG.8061.3,STRG.8061.4,Trinity_GG_21547_c0_g1_i5,blat.proc3829891.chain_260,blat.proc3829891.chain_262,blat.proc3829891.chain_264,blat.proc3829891.chain_266,blat.proc3829891.chain_271,blat.proc3829891.chain_275	11	STRG.8061.6,STRG.8061.8,Trinity_GG_21547_c0_g1_i18,Trinity_GG_21547_c0_g1_i2,Trinity_GG_21547_c0_g1_i7,blat.proc3829891.chain_265,blat.proc3829891.chain_267,blat.proc3829891.chain_269	8
scaffold_1	alternate_exon	3614090	3614568	-	asmbl_168	none	STRG.223.2,blat.proc3829887.chain_127	2	STRG.223.3,blat.proc3829887.chain_126	2
scaffold_25	retained_intron	339732	339809	-	asmbl_33964	none	Trinity_GG_32157_c1_g1_i2,blat.proc3829901.chain_369	2	Trinity_GG_32157_c1_g1_i1,blat.proc3829901.chain_370	2
scaffold_2	skipped_exon	10637962	10638369	-	asmbl_23441,asmbl_23443	none	STRG.2225.2,blat.proc3829887.chain_2057	2	STRG.2225.1,blat.proc3829887.chain_2055,blat.proc3829887.chain_2056,blat.proc3829887.chain_2058	4
scaffold_5	starts_in_intron	15044234	15044234	-	asmbl_46016	none	STRG.6692.8	1	STRG.6692.2,STRG.6692.4,STRG.6692.5,STRG.6692.7,STRG.6692.9	5
scaffold_9	retained_intron	9657137	9657296	+	asmbl_54207,asmbl_54210	none	blat.proc3829877.chain_101,blat.proc3829877.chain_98	2	STRG.11332.1,STRG.11332.2,blat.proc3829877.chain_100,blat.proc3829877.chain_99	4
scaffold_5	alt_donor	4718821	4718822	+	asmbl_43957	none	STRG.5920.1,blat.proc3829873.chain_2092	2	STRG.5920.2	1
scaffold_9	alt_donor	5138136	5138137	-	asmbl_54951	none	STRG.11081.1,blat.proc3829891.chain_3174	2	STRG.11081.2,blat.proc3829891.chain_3175	2
scaffold_1	ends_in_intron	11745890	11745890	+	asmbl_2126	none	blat.proc3829871.chain_879	1	STRG.787.1,Trinity_GG_493_c0_g1_i2,blat.proc3829871.chain_877,blat.proc3829871.chain_878	4
scaffold_25	retained_intron	9292426	9292453	+	asmbl_33795	none	Trinity_GG_15281_c1_g1_i1,blat.proc3829885.chain_717	2	STRG.27727.1	1
scaffold_8	retained_exon	5761387	5761428	+	asmbl_51893	none	Trinity_GG_5561_c0_g1_i1,blat.proc3829875.chain_2489	2	STRG.9986.1	1
scaffold_7	ends_in_intron	9860667	9860667	-	asmbl_49902,asmbl_49904	none	STRG.9178.3,STRG.9178.4,Trinity_GG_22184_c1_g1_i1,blat.proc3829891.chain_1421	4	STRG.9178.1,blat.proc3829891.chain_1416,blat.proc3829891.chain_1417,blat.proc3829891.chain_1418,blat.proc3829891.chain_1419,blat.proc3829891.chain_1420	6
scaffold_8	retained_exon	9868875	9868994	+	asmbl_52101,asmbl_52103,asmbl_52104,asmbl_52105,asmbl_52106,asmbl_52107,asmbl_52108,asmbl_52109	none	STRG.10225.2,STRG.10225.5,blat.proc3829875.chain_2691,blat.proc3829875.chain_2692,blat.proc3829875.chain_2693,blat.proc3829875.chain_2694,blat.proc3829875.chain_2695,blat.proc3829875.chain_2697	8	STRG.10225.4,STRG.10225.6,blat.proc3829875.chain_2696	3
scaffold_11	starts_in_intron	17374560	17374560	+	asmbl_6203	none	Trinity_GG_7898_c0_g1_i2,blat.proc3829877.chain_2824	2	STRG.14392.1,blat.proc3829877.chain_2826	2
scaffold_27	retained_intron	128244	128281	-	asmbl_36588	none	STRG.28527.3	1	STRG.28527.2,blat.proc3829901.chain_1642,blat.proc3829901.chain_1645	3
scaffold_25	spliced_intron	4810874	4810995	+	asmbl_33528,asmbl_33529,asmbl_33530,asmbl_33532	none	STRG.27400.1,STRG.27400.2,Trinity_GG_15078_c0_g1_i1,Trinity_GG_15078_c0_g1_i5,Trinity_GG_15078_c0_g1_i6,blat.proc3829885.chain_374,blat.proc3829885.chain_375,blat.proc3829885.chain_376,blat.proc3829885.chain_377	9	Trinity_GG_15078_c0_g1_i7,blat.proc3829885.chain_378	2
scaffold_14	retained_intron	151364	151716	-	asmbl_12760,asmbl_12763	none	Trinity_GG_26353_c0_g1_i1,blat.proc3829895.chain_1387,blat.proc3829895.chain_1388	3	STRG.16700.4,STRG.16700.5,blat.proc3829895.chain_1383	3
scaffold_26	starts_in_intron	6662851	6662851	+	asmbl_35627	none	blat.proc3829885.chain_1353,blat.proc3829885.chain_1354	2	STRG.28362.1,blat.proc3829885.chain_1352	2
scaffold_24	retained_intron	718962	719078	+	asmbl_32044,asmbl_32045	none	STRG.26330.1,Trinity_GG_14530_c0_g1_i4,blat.proc3829883.chain_3213,blat.proc3829883.chain_3215	4	STRG.26330.2,blat.proc3829883.chain_3214	2
scaffold_4	retained_exon	7150796	7151997	+	asmbl_42802,asmbl_42805	none	STRG.4558.4,blat.proc3829873.chain_882,blat.proc3829873.chain_883,blat.proc3829873.chain_884	4	STRG.4558.1	1
scaffold_18	alternate_exon	10930652	10931933	-	asmbl_20148	none	STRG.21647.1,blat.proc3829897.chain_2473	2	STRG.21647.2	1
scaffold_18	spliced_intron	4768861	4768995	+	asmbl_20589,asmbl_20593	none	STRG.21260.2,STRG.21260.3,blat.proc3829881.chain_2087	3	STRG.21260.1,STRG.21260.5,Trinity_GG_11674_c0_g1_i1,blat.proc3829881.chain_2085,blat.proc3829881.chain_2088	5
scaffold_2	alt_donor	17717795	17717796	-	asmbl_23756,asmbl_23758	none	STRG.2670.2,blat.proc3829887.chain_2448,blat.proc3829887.chain_2451	3	STRG.2670.1,STRG.2670.4,blat.proc3829887.chain_2449,blat.proc3829887.chain_2450	4
scaffold_15	ends_in_intron	11409151	11409151	-	asmbl_15522	none	Trinity_GG_27478_c5_g1_i1	1	STRG.18604.1,STRG.18604.3,blat.proc3829895.chain_3392,blat.proc3829895.chain_3397	4
scaffold_23	skipped_exon	5858438	5860167	+	asmbl_30899	none	STRG.25947.2,Trinity_GG_14280_c0_g1_i2,blat.proc3829883.chain_2752	3	blat.proc3829883.chain_2753	1
scaffold_1	retained_intron	853703	853954	+	asmbl_1426	none	STRG.42.1	1	STRG.42.5	1
scaffold_2	spliced_intron	888658	888815	+	asmbl_24147,asmbl_24148,asmbl_24150,asmbl_24152,asmbl_24153	none	STRG.1564.1,STRG.1564.2,STRG.1564.4,STRG.1564.5,blat.proc3829871.chain_1550	5	STRG.1564.3,Trinity_GG_856_c0_g1_i3,blat.proc3829871.chain_1548	3
scaffold_26	retained_intron	6351209	6351295	-	asmbl_34955	none	STRG.28315.1	1	STRG.28315.2,STRG.28315.3,STRG.28315.5,blat.proc3829901.chain_1403,blat.proc3829901.chain_1404,blat.proc3829901.chain_1406	6
scaffold_16	alternate_exon	5508920	5509077	-	asmbl_16297	none	blat.proc3829897.chain_295	1	STRG.19300.1,STRG.19300.2,Trinity_GG_27832_c1_g1_i3,blat.proc3829897.chain_293	4
scaffold_10	retained_exon	9061441	9061569	-	asmbl_3571	none	STRG.12643.2,blat.proc3829893.chain_1169	2	STRG.12643.1,blat.proc3829893.chain_1168	2
scaffold_14	retained_intron	15565892	15565918	+	asmbl_12609	none	STRG.17784.1	1	STRG.17784.2	1
scaffold_10	ends_in_intron	13771901	13771901	-	asmbl_3833	none	blat.proc3829893.chain_1494	1	STRG.12967.1,blat.proc3829893.chain_1492,blat.proc3829893.chain_1493	3
scaffold_15	retained_exon	4758014	4758185	-	asmbl_15161	none	STRG.18179.1,blat.proc3829895.chain_2882	2	STRG.18179.2	1
scaffold_3	alternate_exon	6063494	6076985	-	asmbl_38849	none	STRG.3254.1,blat.proc3829887.chain_3026	2	Trinity_GG_18797_c0_g1_i4,blat.proc3829887.chain_3024	2
scaffold_22	alt_donor	5934188	5934189	+	asmbl_29366	none	STRG.24924.2	1	STRG.24924.1	1
scaffold_11	retained_intron	6138503	6138584	-	asmbl_6676	none	blat.proc3829893.chain_2098	1	STRG.13667.1,blat.proc3829893.chain_2099,blat.proc3829893.chain_2100	3
scaffold_1	retained_intron	20989024	20989300	+	asmbl_2658	none	STRG.1431.1,Trinity_GG_838_c0_g1_i2,blat.proc3829871.chain_1498	3	blat.proc3829871.chain_1501	1
scaffold_10	skipped_exon	974802	975513	-	asmbl_2936	none	STRG.11970.2,Trinity_GG_23642_c0_g1_i4	2	STRG.11970.1,Trinity_GG_23642_c0_g1_i1,Trinity_GG_23642_c0_g1_i2	3
scaffold_1	alt_donor	5989917	5989918	+	asmbl_1803	none	STRG.398.2	1	STRG.398.1,blat.proc3829871.chain_462	2
scaffold_4	starts_in_intron	5738987	5738987	-	asmbl_41373	none	blat.proc3829889.chain_585	1	STRG.4471.1,STRG.4471.2,blat.proc3829889.chain_584	3
scaffold_5	alt_acceptor	18369202	18369203	+	asmbl_44910	none	STRG.6960.2	1	STRG.6960.1,blat.proc3829873.chain_3112	2
scaffold_21	alt_acceptor	8000696	8000697	-	asmbl_27898,asmbl_27899	none	STRG.24325.1,STRG.24325.2,blat.proc3829899.chain_1424,blat.proc3829899.chain_1426	4	STRG.24325.3,blat.proc3829899.chain_1427	2
scaffold_18	retained_intron	6757958	6758114	-	asmbl_19947	none	STRG.21371.2,Trinity_GG_28990_c0_g1_i1,blat.proc3829897.chain_2249	3	STRG.21371.1,blat.proc3829897.chain_2248	2
scaffold_20	spliced_intron	8129408	8129479	+	asmbl_25902	none	blat.proc3829883.chain_338	1	STRG.23344.1,Trinity_GG_12816_c0_g1_i3,blat.proc3829883.chain_340	3
scaffold_9	ends_in_intron	5532315	5532315	+	asmbl_54038	none	Trinity_GG_6215_c0_g1_i4	1	STRG.11121.1,STRG.11121.3,STRG.11121.4,Trinity_GG_6215_c0_g1_i5,blat.proc3829875.chain_3647	5
scaffold_1	retained_exon	12334830	12334912	-	asmbl_715,asmbl_719,asmbl_720,asmbl_723	none	STRG.843.1,blat.proc3829887.chain_734,blat.proc3829887.chain_744,blat.proc3829887.chain_745	4	blat.proc3829887.chain_735,blat.proc3829887.chain_736	2
scaffold_28	ends_in_intron	1566115	1566115	+	asmbl_38002	none	blat.proc3829885.chain_2433	1	STRG.29320.2	1
scaffold_3	starts_in_intron	9800589	9800589	+	asmbl_40193	none	STRG.3450.4	1	STRG.3450.2	1
scaffold_7	alt_acceptor	301380	301381	+	asmbl_50433	none	STRG.8592.1,blat.proc3829875.chain_1000	2	STRG.8592.2	1
scaffold_25	starts_in_intron	4818534	4818534	+	asmbl_33538	none	STRG.27398.4	1	STRG.27398.1,STRG.27398.2,STRG.27398.3,Trinity_GG_15069_c0_g1_i1,Trinity_GG_15069_c0_g1_i2,blat.proc3829885.chain_359,blat.proc3829885.chain_360	7
scaffold_17	alt_acceptor	789686	789687	+	asmbl_17704	none	STRG.19917.1	1	STRG.19917.2,blat.proc3829881.chain_713	2
scaffold_24	ends_in_intron	8952604	8952604	-	asmbl_33118	none	Trinity_GG_32064_c0_g1_i2,blat.proc3829901.chain_210	2	STRG.26897.1,blat.proc3829901.chain_211	2
scaffold_3	alt_acceptor	17844146	17844147	+	asmbl_40664,asmbl_40665,asmbl_40666	none	STRG.4008.1,STRG.4008.2,blat.proc3829873.chain_341,blat.proc3829873.chain_342,blat.proc3829873.chain_343	5	STRG.4008.3,STRG.4008.4	2
scaffold_3	starts_in_intron	14576256	14576256	-	asmbl_39347,asmbl_39349	none	STRG.3795.3,blat.proc3829887.chain_3615	2	STRG.3795.1,blat.proc3829887.chain_3613	2
scaffold_6	spliced_intron	15944871	15944986	+	asmbl_47618	none	blat.proc3829891.chain_588	1	STRG.8316.1,STRG.8316.3	2
scaffold_27	skipped_exon	9331939	9334621	-	asmbl_37083	none	STRG.29165.1,blat.proc3829901.chain_2280	2	STRG.29165.2	1
scaffold_20	spliced_intron	11600445	11600558	-	asmbl_27092	none	STRG.23657.3	1	STRG.23657.1	1
scaffold_7	alternate_exon	2742877	2742901	+	asmbl_50546	none	STRG.8693.3	1	STRG.8693.1,blat.proc3829875.chain_1120	2
scaffold_2	retained_intron	15267793	15267920	+	asmbl_25025	none	blat.proc3829871.chain_2517	1	STRG.2480.3,blat.proc3829871.chain_2522	2
scaffold_6	retained_intron	11456049	11456165	-	asmbl_48689	none	STRG.7928.1,blat.proc3829891.chain_174	2	STRG.7928.2,blat.proc3829891.chain_175	2
scaffold_5	alt_acceptor	14412057	14412058	+	asmbl_44597	none	STRG.6628.1,Trinity_GG_3605_c0_g1_i1,blat.proc3829873.chain_2736	3	STRG.6628.2,Trinity_GG_3605_c0_g1_i2,blat.proc3829873.chain_2735	3
scaffold_5	spliced_intron	17226676	17226936	+	asmbl_44810,asmbl_44812,asmbl_44813,asmbl_44815	none	STRG.6887.1,STRG.6887.2,blat.proc3829873.chain_3028,blat.proc3829873.chain_3030,blat.proc3829873.chain_3031,blat.proc3829873.chain_3033	6	STRG.6887.3,Trinity_GG_3788_c0_g1_i1,blat.proc3829873.chain_3029,blat.proc3829873.chain_3032	4
scaffold_18	spliced_intron	6757958	6758114	-	asmbl_19948	none	STRG.21371.1,blat.proc3829897.chain_2248	2	STRG.21371.2,Trinity_GG_28990_c0_g1_i1,blat.proc3829897.chain_2249	3
scaffold_18	skipped_exon	6269946	6270567	+	asmbl_20698	none	STRG.21350.1,blat.proc3829881.chain_2287	2	STRG.21350.2,Trinity_GG_11773_c0_g1_i1,blat.proc3829881.chain_2288	3
scaffold_10	retained_intron	7276486	7276839	+	asmbl_4553,asmbl_4554	none	STRG.12531.3,blat.proc3829877.chain_1105	2	STRG.12531.1,STRG.12531.2,blat.proc3829877.chain_1100,blat.proc3829877.chain_1101,blat.proc3829877.chain_1103,blat.proc3829877.chain_1104	6
scaffold_21	alt_acceptor	8278630	8278631	+	asmbl_28818,asmbl_28820	none	STRG.24353.2,blat.proc3829883.chain_1472	2	STRG.24353.1,STRG.24353.3,STRG.24353.4	3
scaffold_1	alt_donor	20306290	20306291	-	asmbl_1175	none	STRG.1379.1	1	STRG.1379.2	1
scaffold_3	alt_acceptor	17362094	17362095	-	asmbl_39500	none	blat.proc3829889.chain_29	1	STRG.3972.1,blat.proc3829889.chain_22,blat.proc3829889.chain_25	3
scaffold_5	alternate_exon	9072334	9072465	+	asmbl_44255	none	STRG.6235.1,blat.proc3829873.chain_2398	2	STRG.6235.2,STRG.6235.3,blat.proc3829873.chain_2399,blat.proc3829873.chain_2400	4
scaffold_10	spliced_intron	6867580	6867786	-	asmbl_3424,asmbl_3426,asmbl_3428	none	STRG.12505.1,blat.proc3829893.chain_994,blat.proc3829893.chain_997,blat.proc3829893.chain_999	4	blat.proc3829893.chain_990,blat.proc3829893.chain_996	2
scaffold_20	alt_acceptor	8339134	8339135	-	asmbl_26908	none	blat.proc3829899.chain_429	1	STRG.23364.1,STRG.23364.2,STRG.23364.3,blat.proc3829899.chain_430,blat.proc3829899.chain_431,blat.proc3829899.chain_432,blat.proc3829899.chain_433,blat.proc3829899.chain_434,blat.proc3829899.chain_435	9
scaffold_11	starts_in_intron	14505076	14505076	+	asmbl_6060	none	Trinity_GG_7785_c1_g1_i3,blat.proc3829877.chain_2609	2	STRG.14232.2	1
scaffold_14	retained_intron	4116785	4116951	+	asmbl_11948	none	STRG.16951.5,Trinity_GG_9333_c0_g1_i4,blat.proc3829879.chain_1686	3	STRG.16951.1,STRG.16951.2,STRG.16951.3,STRG.16951.4,Trinity_GG_9333_c0_g1_i1,Trinity_GG_9333_c0_g1_i3,Trinity_GG_9333_c0_g1_i5,Trinity_GG_9333_c0_g1_i7,blat.proc3829879.chain_1688,blat.proc3829879.chain_1689,blat.proc3829879.chain_1690,blat.proc3829879.chain_1691	12
scaffold_12	retained_exon	9687438	9687595	-	asmbl_7820,asmbl_7822	none	STRG.14929.1,STRG.14929.3,blat.proc3829893.chain_3332	3	STRG.14929.2,STRG.14929.4,Trinity_GG_25344_c0_g1_i1,Trinity_GG_25344_c0_g1_i5,blat.proc3829893.chain_3334,blat.proc3829893.chain_3335	6
scaffold_27	alt_acceptor	1090462	1090463	+	asmbl_35948,asmbl_35949,asmbl_35950	none	STRG.28588.2,STRG.28588.3,blat.proc3829885.chain_1643,blat.proc3829885.chain_1644	4	STRG.28588.1,blat.proc3829885.chain_1642	2
scaffold_4	retained_intron	4104440	4104704	+	asmbl_42556	none	blat.proc3829873.chain_653,blat.proc3829873.chain_654	2	STRG.4315.1,blat.proc3829873.chain_662	2
scaffold_28	ends_in_intron	7495808	7495808	+	asmbl_38381	none	blat.proc3829885.chain_2821	1	STRG.29807.1,blat.proc3829885.chain_2822	2
scaffold_4	alternate_exon	3219454	3219537	-	asmbl_41154	none	STRG.4242.1,Trinity_GG_19336_c0_g1_i1,blat.proc3829889.chain_274	3	STRG.4242.2,Trinity_GG_19336_c0_g1_i2,blat.proc3829889.chain_275	3
scaffold_14	retained_intron	11550073	11550179	+	asmbl_12369	none	STRG.17475.2	1	STRG.17475.1,blat.proc3829879.chain_2180	2
scaffold_1	starts_in_intron	11546521	11546521	+	asmbl_2106	none	Trinity_GG_461_c0_g1_i2,blat.proc3829871.chain_798	2	STRG.758.1,Trinity_GG_461_c0_g1_i1,blat.proc3829871.chain_799	3
scaffold_1	skipped_exon	6126767	6127234	-	asmbl_325	none	blat.proc3829887.chain_298	1	STRG.412.1,STRG.412.2,blat.proc3829887.chain_295	3
scaffold_18	retained_intron	6859375	6859476	+	asmbl_20718	none	STRG.21382.1,blat.proc3829881.chain_2342	2	STRG.21382.2,blat.proc3829881.chain_2341	2
scaffold_27	starts_in_intron	5785987	5785987	-	asmbl_36977	none	blat.proc3829901.chain_2099	1	STRG.28958.1,blat.proc3829901.chain_2098	2
scaffold_19	retained_intron	12432771	12432955	+	asmbl_22607,asmbl_22609,asmbl_22610	none	blat.proc3829881.chain_3515,blat.proc3829881.chain_3518,blat.proc3829881.chain_3519	3	STRG.22558.1,blat.proc3829881.chain_3516,blat.proc3829881.chain_3517,blat.proc3829881.chain_3520	4
scaffold_16	retained_intron	14510973	14511105	-	asmbl_16627	none	Trinity_GG_28131_c0_g1_i2,blat.proc3829897.chain_773	2	STRG.19819.1,blat.proc3829897.chain_770,blat.proc3829897.chain_771,blat.proc3829897.chain_772,blat.proc3829897.chain_774	5
scaffold_7	ends_in_intron	1503965	1503965	+	asmbl_50488	none	STRG.8634.1,blat.proc3829875.chain_1036	2	STRG.8634.2,blat.proc3829875.chain_1035	2
scaffold_14	alt_donor	13380889	13380890	-	asmbl_13621	none	STRG.17613.2,blat.proc3829895.chain_2367,blat.proc3829895.chain_2368	3	STRG.17613.1,blat.proc3829895.chain_2365	2
scaffold_17	alt_acceptor	3844340	3844341	+	asmbl_17868,asmbl_17871	none	STRG.20133.1,blat.proc3829881.chain_938,blat.proc3829881.chain_939	3	blat.proc3829881.chain_937	1
scaffold_8	alternate_exon	15684124	15684691	-	asmbl_53342	none	Trinity_GG_22882_c0_g1_i1,blat.proc3829891.chain_2710	2	STRG.10564.2,Trinity_GG_22882_c0_g1_i2,blat.proc3829891.chain_2709	3
scaffold_19	retained_intron	7466932	7467251	+	asmbl_22262	none	STRG.22210.1,blat.proc3829881.chain_3134	2	Trinity_GG_12268_c0_g1_i3,blat.proc3829881.chain_3133	2
scaffold_6	ends_in_intron	5265500	5265500	+	asmbl_46878	none	blat.proc3829873.chain_3607	1	STRG.7492.1,STRG.7492.3,blat.proc3829873.chain_3609	3
scaffold_1	retained_intron	854980	855130	+	asmbl_1423,asmbl_1427	none	STRG.42.4,STRG.42.5	2	STRG.42.6,Trinity_GG_38_c0_g1_i9,blat.proc3829871.chain_70	3
scaffold_11	alt_donor	1159158	1159159	+	asmbl_5288	none	blat.proc3829877.chain_1803	1	STRG.13299.1,Trinity_GG_7310_c0_g1_i1,blat.proc3829877.chain_1802,blat.proc3829877.chain_1804	4
scaffold_28	retained_exon	7238011	7238146	+	asmbl_38342	none	STRG.29764.1,blat.proc3829885.chain_2847	2	Trinity_GG_16489_c0_g1_i2,blat.proc3829885.chain_2846	2
scaffold_18	alt_acceptor	6000970	6000971	+	asmbl_20687	none	blat.proc3829881.chain_2196	1	STRG.21346.5,blat.proc3829881.chain_2198	2
scaffold_20	alternate_exon	1008285	1008373	+	asmbl_25556	none	STRG.22791.3	1	STRG.22791.2	1
scaffold_15	spliced_intron	12000050	12000366	-	asmbl_15565	none	STRG.18630.2,Trinity_GG_27487_c0_g1_i7,blat.proc3829895.chain_3420	3	blat.proc3829895.chain_3417,blat.proc3829895.chain_3421	2
scaffold_25	retained_exon	4818563	4818694	+	asmbl_33533,asmbl_33535	none	STRG.27398.3,Trinity_GG_15069_c0_g1_i1,Trinity_GG_15069_c0_g1_i2,blat.proc3829885.chain_359,blat.proc3829885.chain_360	5	Trinity_GG_15069_c0_g1_i3,blat.proc3829885.chain_358	2
scaffold_4	starts_in_intron	7998574	7998574	+	asmbl_42863	none	blat.proc3829873.chain_989	1	STRG.4614.1,blat.proc3829873.chain_988	2
scaffold_17	alternate_exon	11036215	11039046	-	asmbl_19309	none	STRG.20653.2,STRG.20653.3,blat.proc3829897.chain_1562,blat.proc3829897.chain_1607	4	STRG.20653.4	1
scaffold_565	ends_in_intron	2535	2535	+	asmbl_46532	none	STRG.30352.2,blat.proc3829885.chain_3384	2	STRG.30352.1,blat.proc3829885.chain_3385	2
scaffold_8	retained_intron	5968927	5969108	+	asmbl_51904	none	blat.proc3829875.chain_2511	1	STRG.9998.1,STRG.9998.2,blat.proc3829875.chain_2512	3
scaffold_21	skipped_exon	690867	692284	+	asmbl_28307	none	STRG.23742.4	1	STRG.23742.3,Trinity_GG_13161_c0_g1_i1	2
scaffold_24	alt_donor	1946770	1946771	-	asmbl_32743,asmbl_32744,asmbl_32746	none	STRG.26401.1,STRG.26401.3,STRG.26401.4	3	STRG.26401.2	1
scaffold_2	retained_intron	16362712	16362798	+	asmbl_25156	none	STRG.2574.2,Trinity_GG_1456_c0_g1_i3,blat.proc3829871.chain_2763	3	STRG.2574.3,STRG.2574.4	2
scaffold_5	skipped_exon	6289314	6290164	+	asmbl_44080	none	STRG.6032.2	1	STRG.6032.1,Trinity_GG_3287_c0_g1_i1,blat.proc3829873.chain_2167	3
scaffold_2	starts_in_intron	13445979	13445979	-	asmbl_23531	none	blat.proc3829887.chain_2215	1	STRG.2365.1,blat.proc3829887.chain_2214,blat.proc3829887.chain_2216,blat.proc3829887.chain_2217	4
scaffold_11	alt_acceptor	334293	334294	+	asmbl_5244	none	STRG.13256.2,blat.proc3829877.chain_1774	2	STRG.13256.1,STRG.13256.3,blat.proc3829877.chain_1777	3
scaffold_17	ends_in_intron	8303489	8303489	-	asmbl_19133,asmbl_19134	none	STRG.20439.2,blat.proc3829897.chain_1353	2	STRG.20439.1,blat.proc3829897.chain_1354	2
scaffold_4	retained_exon	247166	247322	+	asmbl_42417	none	STRG.4120.1	1	STRG.4120.2	1
scaffold_5	spliced_intron	188746	188784	+	asmbl_43750	none	STRG.5581.4	1	STRG.5581.1,STRG.5581.2,STRG.5581.3	3
scaffold_13	retained_intron	8022246	8022334	-	asmbl_9893	none	STRG.16071.1,blat.proc3829895.chain_853	2	STRG.16071.2,blat.proc3829895.chain_854	2
scaffold_4	spliced_intron	6129993	6130181	-	asmbl_41394	none	STRG.4483.2	1	STRG.4483.1	1
scaffold_12	alt_donor	14124873	14124874	-	asmbl_8117	none	STRG.15232.2	1	STRG.15232.1,blat.proc3829893.chain_3710,blat.proc3829893.chain_3711	3
scaffold_13	spliced_intron	7935012	7935207	-	asmbl_9874,asmbl_9875	none	STRG.16055.1,STRG.16055.2,blat.proc3829895.chain_798,blat.proc3829895.chain_800	4	STRG.16055.3,blat.proc3829895.chain_799,blat.proc3829895.chain_803	3
scaffold_2	skipped_exon	4624737	4626065	+	asmbl_24394	none	STRG.1886.1	1	blat.proc3829871.chain_1901	1
scaffold_17	starts_in_intron	681063	681063	-	asmbl_18686	none	blat.proc3829897.chain_874	1	STRG.19908.1,STRG.19908.2,STRG.19908.3,blat.proc3829897.chain_873,blat.proc3829897.chain_875,blat.proc3829897.chain_876,blat.proc3829897.chain_877	7
scaffold_18	retained_intron	4614322	4614432	+	asmbl_20568	none	blat.proc3829881.chain_2081	1	STRG.21243.2,STRG.21243.3,blat.proc3829881.chain_2082,blat.proc3829881.chain_2083	4
scaffold_23	alt_donor	7982612	7982613	+	asmbl_31042	none	STRG.26088.2	1	STRG.26088.1	1
scaffold_5	alt_donor	8680340	8680341	-	asmbl_45607,asmbl_45609	none	STRG.6199.2,blat.proc3829889.chain_2266	2	STRG.6199.1,blat.proc3829889.chain_2267,blat.proc3829889.chain_2268	3
scaffold_10	alternate_exon	11915395	11915471	-	asmbl_3703	none	STRG.12817.2	1	STRG.12817.1,blat.proc3829893.chain_1285	2
scaffold_18	alt_acceptor	4690073	4690074	+	asmbl_20574	none	STRG.21247.1	1	STRG.21247.2,blat.proc3829881.chain_2138	2
scaffold_28	retained_intron	7156851	7156991	+	asmbl_38333,asmbl_38334	none	blat.proc3829885.chain_2849,blat.proc3829885.chain_2853	2	STRG.29751.1,STRG.29751.2,STRG.29751.3,STRG.29751.4,blat.proc3829885.chain_2848,blat.proc3829885.chain_2850,blat.proc3829885.chain_2852	7
scaffold_10	alt_acceptor	12819820	12819821	+	asmbl_4819,asmbl_4820	none	STRG.12857.1,blat.proc3829877.chain_1430,blat.proc3829877.chain_1431	3	STRG.12857.2	1
scaffold_13	skipped_exon	15362462	15364730	+	asmbl_11477	none	Trinity_GG_9120_c0_g1_i1,blat.proc3829879.chain_1300	2	STRG.16566.1,Trinity_GG_9120_c0_g1_i3,Trinity_GG_9120_c0_g1_i4,blat.proc3829879.chain_1298,blat.proc3829879.chain_1299	5
scaffold_12	alt_donor	12451979	12451980	+	asmbl_8971	none	STRG.15137.1	1	STRG.15137.2,blat.proc3829877.chain_3559	2
scaffold_12	alt_acceptor	16728897	16728898	-	asmbl_8280	none	STRG.15400.2,Trinity_GG_25625_c0_g1_i5,blat.proc3829895.chain_93	3	STRG.15400.1,Trinity_GG_25625_c0_g1_i1,blat.proc3829895.chain_94	3
scaffold_5	retained_exon	13802962	13803018	-	asmbl_45941,asmbl_45943,asmbl_45944	none	STRG.6592.2,blat.proc3829889.chain_2652,blat.proc3829889.chain_2655	3	STRG.6592.1,blat.proc3829889.chain_2653	2
scaffold_17	alt_acceptor	5997626	5997627	+	asmbl_17964	none	STRG.20273.1	1	STRG.20273.2,STRG.20273.4,STRG.20273.5,blat.proc3829881.chain_1091	4
scaffold_7	starts_in_intron	6036034	6036034	+	asmbl_50723	none	blat.proc3829875.chain_1339	1	STRG.8898.1,STRG.8898.2,Trinity_GG_4914_c0_g1_i1,Trinity_GG_4914_c0_g1_i2,Trinity_GG_4914_c0_g1_i5,blat.proc3829875.chain_1338,blat.proc3829875.chain_1340,blat.proc3829875.chain_1341	8
scaffold_3	alt_acceptor	11274392	11274393	+	asmbl_40290	none	STRG.3551.2,Trinity_GG_2017_c0_g1_i2,blat.proc3829871.chain_3743	3	STRG.3551.1,Trinity_GG_2017_c0_g1_i1,blat.proc3829871.chain_3744	3
scaffold_14	alt_donor	7285760	7285761	+	asmbl_12123	none	STRG.17150.2,blat.proc3829879.chain_1824	2	STRG.17150.1,blat.proc3829879.chain_1823	2
scaffold_20	alt_acceptor	2403439	2403440	+	asmbl_25642	none	blat.proc3829883.chain_91	1	STRG.22962.2,blat.proc3829883.chain_93	2
scaffold_14	ends_in_intron	5452588	5452588	+	asmbl_11993	none	blat.proc3829879.chain_1726	1	STRG.17005.1,Trinity_GG_9352_c0_g1_i3,Trinity_GG_9352_c0_g1_i6,blat.proc3829879.chain_1723,blat.proc3829879.chain_1724,blat.proc3829879.chain_1727	6
scaffold_11	retained_intron	11641796	11641901	+	asmbl_5948	none	Trinity_GG_7765_c0_g1_i3,blat.proc3829877.chain_2569	2	STRG.14080.1,blat.proc3829877.chain_2568,blat.proc3829877.chain_2570,blat.proc3829877.chain_2572,blat.proc3829877.chain_2573,blat.proc3829877.chain_2574	6
scaffold_17	ends_in_intron	8397058	8397058	-	asmbl_19140	none	Trinity_GG_28499_c0_g1_i2,blat.proc3829897.chain_1385	2	STRG.20450.1,STRG.20450.2,blat.proc3829897.chain_1386	3
scaffold_1	retained_intron	14375886	14375983	+	asmbl_2371	none	Trinity_GG_634_c0_g1_i2,blat.proc3829871.chain_1148	2	STRG.1034.1,blat.proc3829871.chain_1149	2
scaffold_21	retained_intron	7503362	7503507	-	asmbl_27851	none	blat.proc3829899.chain_1356	1	STRG.24269.1,STRG.24269.2,STRG.24269.3,blat.proc3829899.chain_1354,blat.proc3829899.chain_1355,blat.proc3829899.chain_1357	6
scaffold_20	retained_exon	8431370	8431467	+	asmbl_25934	none	STRG.23377.1,blat.proc3829883.chain_453	2	STRG.23377.2,blat.proc3829883.chain_452	2
scaffold_25	starts_in_intron	6070801	6070801	-	asmbl_34289	none	blat.proc3829901.chain_720	1	STRG.27475.1,STRG.27475.2,blat.proc3829901.chain_716,blat.proc3829901.chain_717,blat.proc3829901.chain_718,blat.proc3829901.chain_719,blat.proc3829901.chain_721,blat.proc3829901.chain_722,blat.proc3829901.chain_723	9
scaffold_26	alt_donor	3563037	3563038	+	asmbl_35321,asmbl_35323,asmbl_35326	none	STRG.28018.1,STRG.28018.2,blat.proc3829885.chain_1001,blat.proc3829885.chain_1005	4	STRG.28018.4,blat.proc3829885.chain_1003	2
scaffold_1	spliced_intron	5645145	5645265	+	asmbl_1735,asmbl_1736	none	STRG.357.2,STRG.357.3,blat.proc3829871.chain_414	3	STRG.357.1,STRG.357.4,blat.proc3829871.chain_413,blat.proc3829871.chain_415	4
scaffold_2	spliced_intron	7922295	7922439	-	asmbl_23316,asmbl_23317,asmbl_23318,asmbl_23319	none	STRG.2092.1,blat.proc3829887.chain_2032,blat.proc3829887.chain_2033,blat.proc3829887.chain_2034,blat.proc3829887.chain_2036	5	STRG.2092.2	1
scaffold_1	spliced_intron	13100329	13100568	-	asmbl_800	none	blat.proc3829887.chain_824	1	STRG.941.1,blat.proc3829887.chain_825	2
scaffold_25	starts_in_intron	1431510	1431510	+	asmbl_33364	none	blat.proc3829901.chain_470	1	STRG.27159.4	1
scaffold_5	retained_intron	420430	420561	-	asmbl_45168	none	STRG.5608.1	1	blat.proc3829889.chain_1663	1
scaffold_13	alt_acceptor	4244426	4244427	-	asmbl_9576,asmbl_9578	none	STRG.15737.4,STRG.15737.5	2	STRG.15737.1,STRG.15737.2,STRG.15737.3,blat.proc3829895.chain_477,blat.proc3829895.chain_478,blat.proc3829895.chain_479,blat.proc3829895.chain_480	7
scaffold_14	starts_in_intron	8223966	8223966	-	asmbl_13243	none	STRG.17220.1,Trinity_GG_26660_c0_g1_i1,blat.proc3829895.chain_1910	3	STRG.17220.2	1
scaffold_14	alt_donor	1094343	1094344	+	asmbl_11777	none	STRG.16756.1,blat.proc3829879.chain_1479	2	STRG.16756.2,blat.proc3829879.chain_1481	2
scaffold_11	alt_acceptor	9151130	9151131	+	asmbl_5835	none	STRG.13940.3	1	STRG.13940.1,STRG.13940.2,blat.proc3829877.chain_2458,blat.proc3829877.chain_2459,blat.proc3829877.chain_2460	5
scaffold_28	retained_intron	4255504	4255598	-	asmbl_37525	none	blat.proc3829901.chain_2715	1	STRG.29599.1,blat.proc3829901.chain_2716	2
scaffold_18	alt_acceptor	12935863	12935864	+	asmbl_21002	none	STRG.21731.1	1	STRG.21731.3,blat.proc3829897.chain_2535	2
scaffold_21	alternate_exon	8003427	8003556	-	asmbl_27899	none	STRG.24325.2,blat.proc3829899.chain_1426	2	STRG.24325.3,blat.proc3829899.chain_1427	2
scaffold_3	spliced_intron	3262598	3263507	+	asmbl_39899	none	STRG.3087.1	1	STRG.3087.6,Trinity_GG_1771_c0_g1_i11,Trinity_GG_1771_c0_g1_i19,blat.proc3829871.chain_3296,blat.proc3829871.chain_3301	5
scaffold_16	skipped_exon	7217364	7218215	-	asmbl_16345,asmbl_16346	none	STRG.19382.4,STRG.19382.6	2	STRG.19382.1,STRG.19382.2,STRG.19382.3,STRG.19382.5	4
scaffold_5	alternate_exon	5510463	5510506	+	asmbl_44011	none	STRG.5969.1,blat.proc3829873.chain_2122	2	STRG.5969.3	1
scaffold_12	ends_in_intron	15772745	15772745	-	asmbl_8242	none	STRG.15354.2,blat.proc3829895.chain_82	2	STRG.15354.1,blat.proc3829895.chain_83	2
scaffold_2	starts_in_intron	6906118	6906118	+	asmbl_24532	none	Trinity_GG_1103_c0_g1_i5,blat.proc3829871.chain_2021	2	STRG.2036.1,STRG.2036.2,blat.proc3829871.chain_2019	3
scaffold_20	ends_in_intron	6290480	6290480	-	asmbl_26752	none	STRG.23217.2,blat.proc3829899.chain_266	2	STRG.23217.1,blat.proc3829899.chain_267	2
scaffold_11	starts_in_intron	4729957	4729957	+	asmbl_5470	none	STRG.13549.2	1	STRG.13549.1	1
scaffold_16	ends_in_intron	1514567	1514567	+	asmbl_16870,asmbl_16871,asmbl_16872	none	STRG.19088.1,STRG.19088.3,blat.proc3829879.chain_3697,blat.proc3829879.chain_3698	4	STRG.19088.2	1
scaffold_14	retained_intron	2899140	2899275	+	asmbl_11864	none	STRG.16876.2,Trinity_GG_9285_c0_g1_i1,blat.proc3829879.chain_1594	3	STRG.16876.1,Trinity_GG_9285_c0_g1_i2,blat.proc3829879.chain_1593	3
scaffold_1	spliced_intron	9897278	9897370	-	asmbl_569,asmbl_572	none	STRG.661.1,STRG.661.2,blat.proc3829887.chain_557	3	blat.proc3829887.chain_559	1
scaffold_16	alt_acceptor	6095186	6095187	-	asmbl_16309,asmbl_16310,asmbl_16313,asmbl_16314	none	STRG.19329.1,blat.proc3829897.chain_379,blat.proc3829897.chain_382,blat.proc3829897.chain_383,blat.proc3829897.chain_384	5	STRG.19329.2,blat.proc3829897.chain_380	2
scaffold_6	retained_exon	13060364	13060448	-	asmbl_48810,asmbl_48811	none	STRG.8056.1,STRG.8056.2,blat.proc3829891.chain_351	3	STRG.8056.3	1
scaffold_21	starts_in_intron	983734	983734	+	asmbl_28339	none	blat.proc3829883.chain_906	1	STRG.23769.1	1
scaffold_2	starts_in_intron	2544544	2544544	-	asmbl_22928	none	blat.proc3829887.chain_1540	1	STRG.1696.1,STRG.1696.2,STRG.1696.3,blat.proc3829887.chain_1538,blat.proc3829887.chain_1539	5
scaffold_8	retained_intron	11852641	11854227	+	asmbl_52272,asmbl_52273,asmbl_52274,asmbl_52279,asmbl_52281,asmbl_52282,asmbl_52283,asmbl_52284	none	STRG.10382.2,blat.proc3829875.chain_2966,blat.proc3829875.chain_2970,blat.proc3829875.chain_2971,blat.proc3829875.chain_2973,blat.proc3829875.chain_2976,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978	8	blat.proc3829875.chain_2980	1
scaffold_6	alt_donor	10531207	10531208	+	asmbl_47223	none	blat.proc3829875.chain_270	1	STRG.7882.1	1
scaffold_17	ends_in_intron	9942949	9942949	+	asmbl_18256	none	blat.proc3829881.chain_1388	1	STRG.20600.1,Trinity_GG_11273_c0_g1_i1,blat.proc3829881.chain_1385,blat.proc3829881.chain_1386,blat.proc3829881.chain_1387,blat.proc3829881.chain_1389	6
scaffold_14	retained_exon	4154138	4154261	+	asmbl_11956	none	STRG.16957.2	1	STRG.16957.1,STRG.16957.3	2
scaffold_7	retained_intron	271564	271669	+	asmbl_50424	none	STRG.8586.1	1	STRG.8586.3	1
scaffold_5	spliced_intron	13246847	13246949	+	asmbl_44541,asmbl_44542,asmbl_44545	none	STRG.6561.1,STRG.6561.2,STRG.6561.3,blat.proc3829873.chain_2704,blat.proc3829873.chain_2706	5	blat.proc3829873.chain_2703	1
scaffold_7	skipped_exon	15566218	15569133	-	asmbl_50203	none	blat.proc3829891.chain_1731	1	STRG.9545.1,blat.proc3829891.chain_1730	2
scaffold_7	alternate_exon	4072560	4080155	-	asmbl_49667	none	STRG.8797.1	1	blat.proc3829891.chain_1110	1
scaffold_2	retained_exon	926071	926099	+	asmbl_24176	none	STRG.1569.4	1	blat.proc3829871.chain_1535,blat.proc3829871.chain_1542	2
scaffold_25	ends_in_intron	3823519	3823519	-	asmbl_34149	none	blat.proc3829901.chain_612	1	STRG.27322.2,blat.proc3829901.chain_613	2
scaffold_5	alt_acceptor	1097063	1097064	-	asmbl_45213	none	blat.proc3829889.chain_1801	1	STRG.5657.1	1
scaffold_17	alternate_exon	10054837	10054885	-	asmbl_19280	none	STRG.20610.1,blat.proc3829897.chain_1578	2	STRG.20610.2	1
scaffold_6	retained_exon	18923948	18924652	-	asmbl_49225	none	STRG.8554.1,blat.proc3829891.chain_893	2	STRG.8554.2	1
scaffold_19	ends_in_intron	12473773	12473773	-	asmbl_21706	none	blat.proc3829897.chain_3299	1	STRG.22565.1,Trinity_GG_29573_c1_g1_i6,blat.proc3829897.chain_3301	3
scaffold_5	skipped_exon	10889948	10890320	-	asmbl_45767,asmbl_45769	none	STRG.6359.2,blat.proc3829889.chain_2353,blat.proc3829889.chain_2356	3	STRG.6359.1,blat.proc3829889.chain_2357,blat.proc3829889.chain_2358	3
scaffold_1	retained_intron	7370029	7370112	-	asmbl_439,asmbl_442	none	STRG.517.1,STRG.517.4,Trinity_GG_17298_c0_g1_i1,blat.proc3829887.chain_413	4	STRG.517.2,STRG.517.5	2
scaffold_3	alternate_exon	18758660	18758768	+	asmbl_40702	none	STRG.4059.3	1	STRG.4059.1,STRG.4059.2	2
scaffold_4	alt_acceptor	13417150	13417151	+	asmbl_43122,asmbl_43124,asmbl_43125	none	STRG.4972.2,blat.proc3829873.chain_1258,blat.proc3829873.chain_1259	3	STRG.4972.1,blat.proc3829873.chain_1257,blat.proc3829873.chain_1260	3
scaffold_17	retained_intron	14097321	14097576	-	asmbl_19455,asmbl_19457	none	blat.proc3829897.chain_1688,blat.proc3829897.chain_1691	2	STRG.20887.1,blat.proc3829897.chain_1689,blat.proc3829897.chain_1690	3
scaffold_5	alternate_exon	4721759	4727070	+	asmbl_43957	none	STRG.5920.1,blat.proc3829873.chain_2092	2	STRG.5920.2	1
scaffold_4	starts_in_intron	6949173	6949173	+	asmbl_42765	none	Trinity_GG_2515_c0_g1_i6,blat.proc3829873.chain_904	2	STRG.4536.1,STRG.4536.2,STRG.4536.3,Trinity_GG_2515_c0_g1_i3,Trinity_GG_2515_c0_g1_i7,blat.proc3829873.chain_899,blat.proc3829873.chain_900,blat.proc3829873.chain_901,blat.proc3829873.chain_902,blat.proc3829873.chain_903,blat.proc3829873.chain_905	11
scaffold_5	starts_in_intron	4683744	4683744	-	asmbl_45371	none	STRG.5919.2,blat.proc3829889.chain_2025	2	STRG.5919.1,STRG.5919.4,blat.proc3829889.chain_2027,blat.proc3829889.chain_2028,blat.proc3829889.chain_2029,blat.proc3829889.chain_2030,blat.proc3829889.chain_2032,blat.proc3829889.chain_2033,blat.proc3829889.chain_2035	9
scaffold_19	alt_acceptor	8213617	8213618	-	asmbl_21488	none	STRG.22258.2,blat.proc3829897.chain_2996	2	STRG.22258.1,blat.proc3829897.chain_2997,blat.proc3829897.chain_2998	3
scaffold_16	alt_acceptor	4148827	4148828	+	asmbl_16969,asmbl_16971	none	STRG.19218.1,STRG.19218.3,Trinity_GG_10518_c0_g1_i2,blat.proc3829881.chain_44	4	STRG.19218.2	1
scaffold_20	spliced_intron	8323604	8323724	+	asmbl_25921	none	STRG.23363.2,blat.proc3829883.chain_444	2	STRG.23363.1,blat.proc3829883.chain_442,blat.proc3829883.chain_443	3
scaffold_26	alternate_exon	5976991	5983272	+	asmbl_35587	none	STRG.28298.1,blat.proc3829885.chain_1321	2	STRG.28298.2	1
scaffold_8	spliced_intron	11243691	11244097	+	asmbl_52194	none	STRG.10324.1,blat.proc3829875.chain_2845	2	Trinity_GG_5749_c0_g1_i2,Trinity_GG_5749_c0_g1_i3,blat.proc3829875.chain_2843,blat.proc3829875.chain_2844	4
scaffold_643	spliced_intron	1606	1628	-	asmbl_49429	none	STRG.30389.2	1	blat.proc3829901.chain_3439	1
scaffold_24	spliced_intron	10422912	10423124	+	asmbl_32560	none	STRG.26986.1,blat.proc3829885.chain_119	2	Trinity_GG_14914_c0_g1_i1,blat.proc3829885.chain_118	2
scaffold_7	retained_exon	1225105	1225206	+	asmbl_50467	none	STRG.8626.2,blat.proc3829875.chain_1024	2	STRG.8626.1,blat.proc3829875.chain_1025	2
scaffold_1	retained_exon	15281399	15281618	+	asmbl_2416	none	STRG.1091.1	1	STRG.1091.2,blat.proc3829871.chain_1167	2
scaffold_14	spliced_intron	7508898	7509085	-	asmbl_13203,asmbl_13205	none	STRG.17180.1,blat.proc3829895.chain_1866,blat.proc3829895.chain_1870	3	STRG.17180.2,blat.proc3829895.chain_1868,blat.proc3829895.chain_1869	3
scaffold_1150	alt_donor	1346	1347	+	asmbl_7385	none	STRG.30530.1,blat.proc3829885.chain_3482	2	STRG.30530.2	1
scaffold_10	alternate_exon	11884440	11884491	-	asmbl_3698	none	STRG.12820.2	1	STRG.12820.1,STRG.12820.3	2
scaffold_4	starts_in_intron	15729591	15729591	-	asmbl_41872	none	STRG.5163.2	1	STRG.5163.1,blat.proc3829889.chain_1184,blat.proc3829889.chain_1186	3
scaffold_2	alternate_exon	14132114	14137214	-	asmbl_23573,asmbl_23574,asmbl_23575	none	STRG.2406.1,blat.proc3829887.chain_2196,blat.proc3829887.chain_2197,blat.proc3829887.chain_2198	4	STRG.2406.2	1
scaffold_12	spliced_intron	16247233	16247328	+	asmbl_9118	none	STRG.15363.2,Trinity_GG_8439_c0_g1_i3,blat.proc3829879.chain_15	3	STRG.15363.3,Trinity_GG_8439_c0_g1_i1,blat.proc3829879.chain_16	3
scaffold_3	spliced_intron	14844379	14844569	+	asmbl_40518	none	STRG.3834.1,blat.proc3829873.chain_187	2	STRG.3834.2	1
scaffold_26	alternate_exon	9842484	9842586	-	asmbl_35069	none	STRG.28525.2	1	Trinity_GG_32930_c0_g1_i2,blat.proc3829901.chain_1620,blat.proc3829901.chain_1621	3
scaffold_10	alternate_exon	1175351	1175465	+	asmbl_4201	none	blat.proc3829877.chain_710	1	STRG.12000.1,blat.proc3829877.chain_711	2
scaffold_11	retained_exon	8331179	8331294	+	asmbl_5715	none	STRG.13833.1,Trinity_GG_7590_c0_g1_i1,blat.proc3829877.chain_2259	3	Trinity_GG_7590_c0_g1_i2,blat.proc3829877.chain_2258	2
scaffold_14	alternate_exon	16026061	16026150	+	asmbl_12638	none	STRG.17829.2	1	STRG.17829.1,blat.proc3829879.chain_2497	2
scaffold_6	ends_in_intron	8587652	8587652	+	asmbl_47097	none	blat.proc3829875.chain_96	1	STRG.7733.1,Trinity_GG_4242_c0_g1_i1,blat.proc3829875.chain_97,blat.proc3829875.chain_99	4
scaffold_7	alt_donor	12451189	12451190	-	asmbl_50047	none	STRG.9342.3	1	Trinity_GG_22282_c1_g1_i12,blat.proc3829891.chain_1610	2
scaffold_4	skipped_exon	16871896	16873535	-	asmbl_41976,asmbl_41978	none	STRG.5279.1,blat.proc3829889.chain_1280,blat.proc3829889.chain_1282	3	STRG.5279.2	1
scaffold_12	skipped_exon	9668105	9669325	+	asmbl_8832	none	STRG.14928.2,Trinity_GG_8223_c0_g1_i2,blat.proc3829877.chain_3380	3	STRG.14928.1	1
scaffold_23	starts_in_intron	3454212	3454212	-	asmbl_31516	none	blat.proc3829899.chain_2884	1	STRG.25748.1,blat.proc3829899.chain_2885	2
scaffold_25	starts_in_intron	8424793	8424793	+	asmbl_33729	none	Trinity_GG_15261_c0_g1_i2,blat.proc3829885.chain_674	2	STRG.27657.1,blat.proc3829885.chain_672	2
scaffold_27	alternate_exon	2818201	2818700	+	asmbl_36074,asmbl_36079	none	STRG.28742.1,blat.proc3829885.chain_1799,blat.proc3829885.chain_1801	3	STRG.28742.2,STRG.28742.3,STRG.28742.4,blat.proc3829885.chain_1802,blat.proc3829885.chain_1803	5
scaffold_18	starts_in_intron	11642191	11642191	+	asmbl_20972	none	Trinity_GG_11979_c0_g1_i3,blat.proc3829881.chain_2633	2	STRG.21675.1,Trinity_GG_11979_c0_g1_i1,blat.proc3829881.chain_2634	3
scaffold_27	alternate_exon	327897	328178	-	asmbl_36619	none	STRG.28541.1,Trinity_GG_32973_c0_g1_i4,blat.proc3829901.chain_1722	3	STRG.28541.2,blat.proc3829901.chain_1723	2
scaffold_8	spliced_intron	7482090	7482283	-	asmbl_52903,asmbl_52907	none	STRG.10067.1,blat.proc3829891.chain_2151,blat.proc3829891.chain_2152	3	blat.proc3829891.chain_2149	1
scaffold_9	ends_in_intron	16387303	16387303	+	asmbl_54568	none	STRG.11784.2	1	STRG.11784.1,Trinity_GG_6572_c0_g1_i4,blat.proc3829877.chain_530,blat.proc3829877.chain_531	4
scaffold_17	ends_in_intron	12381278	12381278	-	asmbl_19370,asmbl_19372	none	STRG.20776.5,Trinity_GG_28651_c0_g1_i1,blat.proc3829897.chain_1637	3	STRG.20776.1,STRG.20776.2,STRG.20776.3,STRG.20776.4,blat.proc3829897.chain_1640	5
scaffold_17	starts_in_intron	10055263	10055263	+	asmbl_18291	none	blat.proc3829881.chain_1419	1	STRG.20611.1,blat.proc3829881.chain_1418	2
scaffold_2	spliced_intron	10725827	10726142	+	asmbl_24765	none	STRG.2241.1,blat.proc3829871.chain_2348	2	STRG.2241.2,blat.proc3829871.chain_2347	2
scaffold_15	spliced_intron	14323219	14323986	-	asmbl_15734	none	Trinity_GG_27599_c0_g1_i1,blat.proc3829895.chain_3605	2	STRG.18855.3,Trinity_GG_27599_c0_g1_i11	2
scaffold_21	alternate_exon	8001305	8001726	-	asmbl_27900	none	STRG.24325.3,blat.proc3829899.chain_1427	2	STRG.24325.1,STRG.24325.2,blat.proc3829899.chain_1424,blat.proc3829899.chain_1426	4
scaffold_1	spliced_intron	7290185	7290421	+	asmbl_1891	none	STRG.526.2,Trinity_GG_300_c0_g1_i4,blat.proc3829871.chain_530	3	STRG.526.1,STRG.526.4,Trinity_GG_300_c0_g1_i1,blat.proc3829871.chain_531	4
scaffold_1466	starts_in_intron	1671	1671	+	asmbl_13875	none	blat.proc3829885.chain_3528	1	STRG.30583.1,blat.proc3829885.chain_3527	2
scaffold_3	starts_in_intron	14775468	14775468	-	asmbl_39374	none	blat.proc3829887.chain_3631	1	STRG.3820.1,STRG.3820.2,blat.proc3829887.chain_3623,blat.proc3829887.chain_3625	4
scaffold_1	starts_in_intron	17918118	17918118	+	asmbl_2523	none	Trinity_GG_745_c0_g1_i4,blat.proc3829871.chain_1317	2	STRG.1258.1,STRG.1258.2,STRG.1258.3	3
scaffold_13	alternate_exon	709750	709829	+	asmbl_10470	none	STRG.15440.2,blat.proc3829879.chain_105	2	STRG.15440.1,blat.proc3829879.chain_104	2
scaffold_5	alt_acceptor	9082267	9082268	+	asmbl_44259,asmbl_44262,asmbl_44263,asmbl_44264,asmbl_44265,asmbl_44266,asmbl_44267,asmbl_44269,asmbl_44270	none	STRG.6237.1,STRG.6237.2,STRG.6237.3,STRG.6237.4,blat.proc3829873.chain_2418,blat.proc3829873.chain_2419,blat.proc3829873.chain_2421,blat.proc3829873.chain_2422,blat.proc3829873.chain_2423,blat.proc3829873.chain_2426	10	STRG.6237.5	1
scaffold_21	retained_intron	255543	255961	-	asmbl_27312,asmbl_27313,asmbl_27317	none	STRG.23718.1,Trinity_GG_30232_c0_g1_i2,blat.proc3829899.chain_784,blat.proc3829899.chain_789,blat.proc3829899.chain_791,blat.proc3829899.chain_794	6	STRG.23718.2,STRG.23718.3,STRG.23718.4,STRG.23718.5,STRG.23718.6,STRG.23718.7,STRG.23718.8,blat.proc3829899.chain_781,blat.proc3829899.chain_782,blat.proc3829899.chain_785,blat.proc3829899.chain_786,blat.proc3829899.chain_787,blat.proc3829899.chain_788,blat.proc3829899.chain_792,blat.proc3829899.chain_793	15
scaffold_13	alt_donor	9338232	9338233	-	asmbl_9983	none	STRG.16186.3,blat.proc3829895.chain_954	2	STRG.16186.1,STRG.16186.2,STRG.16186.4,blat.proc3829895.chain_952	4
scaffold_16	alt_acceptor	14655986	14655987	-	asmbl_16671	none	STRG.19848.2,blat.proc3829897.chain_743	2	STRG.19848.1,blat.proc3829897.chain_741	2
scaffold_19	starts_in_intron	12332887	12332887	+	asmbl_22591	none	Trinity_GG_12477_c0_g1_i5,blat.proc3829881.chain_3505	2	STRG.22550.1,Trinity_GG_12477_c0_g1_i2,blat.proc3829881.chain_3504	3
scaffold_2	starts_in_intron	14276962	14276962	+	asmbl_24930	none	STRG.2425.4	1	STRG.2425.1,STRG.2425.2,STRG.2425.3,blat.proc3829871.chain_2541,blat.proc3829871.chain_2542,blat.proc3829871.chain_2543,blat.proc3829871.chain_2544,blat.proc3829871.chain_2545,blat.proc3829871.chain_2547	9
scaffold_11	ends_in_intron	8428465	8428465	+	asmbl_5739	none	Trinity_GG_7631_c0_g1_i2,blat.proc3829877.chain_2327	2	STRG.13849.1,STRG.13849.2,Trinity_GG_7631_c0_g1_i3,Trinity_GG_7631_c0_g2_i1,Trinity_GG_7631_c0_g3_i1,blat.proc3829877.chain_2325,blat.proc3829877.chain_2331,blat.proc3829877.chain_2332	8
scaffold_8	ends_in_intron	7451958	7451958	-	asmbl_52902	none	Trinity_GG_22618_c0_g1_i3,blat.proc3829891.chain_2200	2	STRG.10061.1,STRG.10061.2,Trinity_GG_22618_c0_g1_i2,blat.proc3829891.chain_2199,blat.proc3829891.chain_2201	5
scaffold_23	ends_in_intron	4684266	4684266	+	asmbl_30825	none	Trinity_GG_14261_c0_g1_i1,blat.proc3829883.chain_2726	2	STRG.25852.1	1
scaffold_2	alt_acceptor	14198792	14198793	-	asmbl_23587,asmbl_23591	none	STRG.2411.1,STRG.2411.3,blat.proc3829887.chain_2297	3	STRG.2411.4,blat.proc3829887.chain_2298	2
scaffold_1	alt_donor	18043900	18043901	-	asmbl_1083,asmbl_1084	none	STRG.1266.2,blat.proc3829887.chain_1163	2	STRG.1266.1,blat.proc3829887.chain_1162	2
scaffold_20	spliced_intron	817430	817604	+	asmbl_25534	none	STRG.22780.2,blat.proc3829881.chain_3615	2	STRG.22780.1,Trinity_GG_12526_c0_g1_i5,blat.proc3829881.chain_3614,blat.proc3829881.chain_3616,blat.proc3829881.chain_3617	5
scaffold_4	alt_acceptor	18558483	18558484	-	asmbl_42131,asmbl_42133,asmbl_42134	none	STRG.5457.1,STRG.5457.2,blat.proc3829889.chain_1544,blat.proc3829889.chain_1545	4	blat.proc3829889.chain_1543	1
scaffold_11	alt_donor	4330958	4330959	-	asmbl_6573,asmbl_6576	none	STRG.13521.1,STRG.13521.3,blat.proc3829893.chain_1998	3	STRG.13521.2,blat.proc3829893.chain_2001	2
scaffold_13	starts_in_intron	8942776	8942776	-	asmbl_9958	none	blat.proc3829895.chain_919	1	STRG.16149.1,blat.proc3829895.chain_920	2
scaffold_16	alt_acceptor	8144292	8144293	+	asmbl_17181	none	STRG.19444.2	1	STRG.19444.1,blat.proc3829881.chain_247	2
scaffold_21	retained_intron	7010245	7010833	-	asmbl_27799	none	STRG.24222.2,blat.proc3829899.chain_1275	2	STRG.24222.1,blat.proc3829899.chain_1273	2
scaffold_15	alternate_exon	12030213	12030368	+	asmbl_14458	none	STRG.18636.3,Trinity_GG_10227_c0_g1_i4,blat.proc3829879.chain_3225	3	STRG.18636.2,Trinity_GG_10227_c0_g1_i2,blat.proc3829879.chain_3226	3
scaffold_24	spliced_intron	8750513	8750667	-	asmbl_33094	none	STRG.26871.2,blat.proc3829901.chain_160	2	STRG.26871.1,blat.proc3829901.chain_158,blat.proc3829901.chain_159,blat.proc3829901.chain_161	4
scaffold_17	starts_in_intron	1030891	1030891	-	asmbl_18708	none	Trinity_GG_28179_c0_g1_i2	1	STRG.19929.1,blat.proc3829897.chain_855	2
scaffold_9	retained_intron	17851315	17852001	+	asmbl_54629	none	STRG.11860.3	1	STRG.11860.2	1
scaffold_3	retained_exon	13425154	13425197	-	asmbl_39217	none	STRG.3690.5	1	STRG.3690.1,STRG.3690.2,STRG.3690.3,STRG.3690.4	4
scaffold_723	spliced_intron	794	900	-	asmbl_51569,asmbl_51570,asmbl_51572,asmbl_51573,asmbl_51574,asmbl_51575	none	STRG.30418.1,STRG.30418.2,blat.proc3829901.chain_3460,blat.proc3829901.chain_3461,blat.proc3829901.chain_3463,blat.proc3829901.chain_3464,blat.proc3829901.chain_3465	7	blat.proc3829901.chain_3459	1
scaffold_2747	starts_in_intron	622	622	+	asmbl_37197	none	blat.proc3829885.chain_3618	1	STRG.30759.1	1
scaffold_20	retained_intron	12075926	12076083	-	asmbl_27141	none	Trinity_GG_30196_c0_g1_i7,blat.proc3829899.chain_689	2	STRG.23691.1,blat.proc3829899.chain_688,blat.proc3829899.chain_690,blat.proc3829899.chain_692	4
scaffold_7	retained_exon	17611628	17611792	+	asmbl_51368	none	STRG.9601.1,blat.proc3829875.chain_2006	2	STRG.9601.2	1
scaffold_20	retained_intron	5922950	5923078	-	asmbl_26711,asmbl_26712	none	blat.proc3829899.chain_144,blat.proc3829899.chain_145	2	STRG.23184.1,STRG.23184.2,STRG.23184.3,STRG.23184.4,blat.proc3829899.chain_147,blat.proc3829899.chain_148,blat.proc3829899.chain_149,blat.proc3829899.chain_150	8
scaffold_13	alt_donor	16161619	16161620	-	asmbl_10242	none	STRG.16647.1,blat.proc3829895.chain_1327	2	STRG.16647.2,blat.proc3829895.chain_1328	2
scaffold_7	retained_intron	5916677	5917155	-	asmbl_49711	none	STRG.8887.5,Trinity_GG_22041_c0_g1_i6,blat.proc3829891.chain_1163,blat.proc3829891.chain_1166	4	STRG.8887.1,STRG.8887.4,blat.proc3829891.chain_1165	3
scaffold_16	retained_intron	9033041	9033770	+	asmbl_17254,asmbl_17255,asmbl_17256	none	STRG.19501.1,STRG.19501.4,Trinity_GG_10690_c0_g1_i6,blat.proc3829881.chain_387,blat.proc3829881.chain_390	5	STRG.19501.3,blat.proc3829881.chain_391	2
scaffold_1	alt_acceptor	15988379	15988380	+	asmbl_2439	none	STRG.1118.1,blat.proc3829871.chain_1185	2	STRG.1118.2	1
scaffold_27	alt_donor	2881196	2881197	+	asmbl_36100,asmbl_36101,asmbl_36103,asmbl_36105	none	STRG.28753.2,STRG.28753.3,STRG.28753.4,blat.proc3829885.chain_1819,blat.proc3829885.chain_1821,blat.proc3829885.chain_1823	6	STRG.28753.1,blat.proc3829885.chain_1817,blat.proc3829885.chain_1818,blat.proc3829885.chain_1820	4
scaffold_20	ends_in_intron	4095130	4095130	-	asmbl_26647	none	STRG.23093.3	1	STRG.23093.2	1
scaffold_16	spliced_intron	743885	744041	-	asmbl_16066,asmbl_16068,asmbl_16069,asmbl_16070,asmbl_16071,asmbl_16072	none	STRG.19044.1,STRG.19044.2,blat.proc3829897.chain_10,blat.proc3829897.chain_11,blat.proc3829897.chain_13,blat.proc3829897.chain_14,blat.proc3829897.chain_9	7	Trinity_GG_27678_c0_g1_i5,blat.proc3829897.chain_12	2
scaffold_1	retained_intron	4239169	4239798	+	asmbl_1652,asmbl_1654	none	blat.proc3829871.chain_227,blat.proc3829871.chain_230	2	STRG.253.2,blat.proc3829871.chain_224,blat.proc3829871.chain_233	3
scaffold_5	starts_in_intron	9075203	9075203	+	asmbl_44258	none	Trinity_GG_3412_c0_g1_i2,blat.proc3829873.chain_2397	2	STRG.6235.1,STRG.6235.2,STRG.6235.3,blat.proc3829873.chain_2398,blat.proc3829873.chain_2399,blat.proc3829873.chain_2400	6
scaffold_15	retained_exon	15323083	15323205	+	asmbl_14698	none	STRG.18911.1	1	STRG.18911.2,Trinity_GG_10357_c0_g1_i1,blat.proc3829879.chain_3469	3
scaffold_20	retained_intron	11600445	11600558	-	asmbl_27095	none	STRG.23657.1	1	STRG.23657.3	1
scaffold_2	alt_donor	4020290	4020291	-	asmbl_23066	none	STRG.1843.2	1	STRG.1843.1,blat.proc3829887.chain_1706,blat.proc3829887.chain_1707	3
scaffold_26	spliced_intron	9943076	9943771	-	asmbl_35077	none	STRG.28510.3	1	STRG.28510.1,STRG.28510.2,Trinity_GG_32907_c0_g1_i1,Trinity_GG_32907_c1_g1_i1,blat.proc3829901.chain_1584,blat.proc3829901.chain_1585	6
scaffold_6	retained_intron	6869228	6869357	+	asmbl_46949,asmbl_46951,asmbl_46953	none	STRG.7585.1,STRG.7585.3,blat.proc3829873.chain_3678,blat.proc3829873.chain_3679	4	STRG.7585.2,blat.proc3829873.chain_3677	2
scaffold_5	retained_intron	14601535	14601964	-	asmbl_45984	none	STRG.6652.1,Trinity_GG_20743_c0_g1_i2,blat.proc3829889.chain_2700	3	STRG.6652.2,blat.proc3829889.chain_2699	2
scaffold_10	ends_in_intron	2775436	2775436	+	asmbl_4291	none	blat.proc3829877.chain_809	1	STRG.12089.1,blat.proc3829877.chain_808	2
scaffold_21	alt_acceptor	11272091	11272092	-	asmbl_28141	none	STRG.24588.2	1	STRG.24588.1,blat.proc3829899.chain_1688,blat.proc3829899.chain_1689,blat.proc3829899.chain_1690,blat.proc3829899.chain_1691,blat.proc3829899.chain_1692,blat.proc3829899.chain_1695	7
scaffold_28	starts_in_intron	2652685	2652685	+	asmbl_38092	none	blat.proc3829885.chain_2583	1	STRG.29436.2	1
scaffold_13	retained_intron	6396903	6397368	+	asmbl_10911	none	Trinity_GG_8718_c0_g1_i3,blat.proc3829879.chain_554	2	STRG.15914.1,STRG.15914.3,Trinity_GG_8718_c0_g1_i1,Trinity_GG_8718_c0_g1_i2,blat.proc3829879.chain_555,blat.proc3829879.chain_557	6
scaffold_5	starts_in_intron	8786727	8786727	+	asmbl_44234	none	STRG.6209.2	1	STRG.6209.1,blat.proc3829873.chain_2348,blat.proc3829873.chain_2349,blat.proc3829873.chain_2350	4
scaffold_5	ends_in_intron	2670604	2670604	-	asmbl_45282,asmbl_45283	none	STRG.5790.5,STRG.5790.6,blat.proc3829889.chain_1873,blat.proc3829889.chain_1876	4	STRG.5790.1,STRG.5790.3,blat.proc3829889.chain_1872,blat.proc3829889.chain_1875	4
scaffold_21	retained_intron	7600965	7601224	+	asmbl_28770	none	STRG.24282.3,blat.proc3829883.chain_1431	2	STRG.24282.2,blat.proc3829883.chain_1429	2
scaffold_20	spliced_intron	11591608	11592897	-	asmbl_27092,asmbl_27095,asmbl_27096	none	STRG.23657.1,STRG.23657.2,STRG.23657.3	3	Trinity_GG_30197_c0_g1_i16,Trinity_GG_30197_c0_g2_i1,blat.proc3829899.chain_700,blat.proc3829899.chain_705	4
scaffold_21	alternate_exon	6488029	6488118	+	asmbl_28673	none	STRG.24157.3	1	STRG.24157.1,STRG.24157.2,blat.proc3829883.chain_1311,blat.proc3829883.chain_1313	4
scaffold_2	alt_donor	17455949	17455950	+	asmbl_25200	none	STRG.2630.2,blat.proc3829871.chain_2818	2	STRG.2630.1	1
scaffold_14	alternate_exon	2888529	2890221	-	asmbl_12962,asmbl_12963	none	STRG.16870.1,STRG.16870.3,blat.proc3829895.chain_1570,blat.proc3829895.chain_1574	4	STRG.16870.2,STRG.16870.4,Trinity_GG_26461_c0_g1_i1,blat.proc3829895.chain_1571,blat.proc3829895.chain_1572	5
scaffold_8	alternate_exon	10006366	10006518	+	asmbl_52125	none	STRG.10249.1,blat.proc3829875.chain_2754	2	STRG.10249.2,STRG.10249.3	2
scaffold_11	alt_acceptor	3018629	3018630	+	asmbl_5353	none	STRG.13417.2,blat.proc3829877.chain_1808	2	STRG.13417.1	1
scaffold_19	retained_exon	12337504	12337563	+	asmbl_22593,asmbl_22594	none	STRG.22552.1,STRG.22552.2,blat.proc3829881.chain_3499,blat.proc3829881.chain_3502	4	blat.proc3829881.chain_3500,blat.proc3829881.chain_3501	2
scaffold_1	retained_intron	4010865	4010976	-	asmbl_176	none	STRG.240.1,blat.proc3829887.chain_65	2	STRG.240.2	1
scaffold_28	retained_intron	9225948	9226024	-	asmbl_37826,asmbl_37827	none	STRG.29944.1,Trinity_GG_33803_c0_g1_i1,Trinity_GG_33803_c0_g1_i2,blat.proc3829901.chain_3059,blat.proc3829901.chain_3060	5	STRG.29944.2	1
scaffold_16	retained_intron	6199474	6199753	+	asmbl_17095	none	Trinity_GG_10586_c0_g1_i3,blat.proc3829881.chain_203	2	STRG.19374.1,STRG.19374.2,blat.proc3829881.chain_202	3
scaffold_17	spliced_intron	10240432	10240572	-	asmbl_19290	none	STRG.20631.2,Trinity_GG_28591_c0_g1_i2,blat.proc3829897.chain_1542	3	STRG.20631.1,Trinity_GG_28591_c0_g1_i1,blat.proc3829897.chain_1543	3
scaffold_7	alt_acceptor	41516	41517	+	asmbl_50418	none	STRG.8577.3	1	STRG.8577.1,STRG.8577.2,Trinity_GG_4727_c0_g1_i1,Trinity_GG_4727_c0_g1_i2,blat.proc3829875.chain_1004	5
scaffold_22	alternate_exon	9896666	9899700	-	asmbl_30338	none	STRG.25313.1,blat.proc3829899.chain_2379	2	STRG.25313.2	1
scaffold_19	alt_acceptor	7584264	7584265	+	asmbl_22275,asmbl_22276,asmbl_22277	none	STRG.22230.1,STRG.22230.2,Trinity_GG_12292_c1_g1_i2,blat.proc3829881.chain_3168,blat.proc3829881.chain_3171,blat.proc3829881.chain_3173,blat.proc3829881.chain_3175	7	blat.proc3829881.chain_3174	1
scaffold_1	starts_in_intron	9981456	9981456	+	asmbl_1992	none	blat.proc3829871.chain_712	1	STRG.668.1,blat.proc3829871.chain_710	2
scaffold_13	spliced_intron	2340633	2340911	+	asmbl_10591	none	STRG.15543.9	1	STRG.15543.10,STRG.15543.11,blat.proc3829879.chain_163,blat.proc3829879.chain_164	4
scaffold_26	skipped_exon	4331957	4333629	-	asmbl_34821	none	STRG.28149.2	1	STRG.28149.1,STRG.28149.4	2
scaffold_1	spliced_intron	14200941	14201384	+	asmbl_2322,asmbl_2325,asmbl_2327	none	STRG.1004.2,STRG.1004.3,Trinity_GG_586_c0_g1_i4,Trinity_GG_586_c0_g1_i5,blat.proc3829871.chain_1046,blat.proc3829871.chain_1052	6	Trinity_GG_586_c0_g1_i3,blat.proc3829871.chain_1045,blat.proc3829871.chain_1049,blat.proc3829871.chain_1051	4
scaffold_4	alternate_exon	8621858	8621985	-	asmbl_41521	none	blat.proc3829889.chain_741	1	STRG.4679.1,blat.proc3829889.chain_739,blat.proc3829889.chain_740	3
scaffold_11	retained_intron	13033062	13033309	-	asmbl_7096	none	blat.proc3829893.chain_2577	1	STRG.14169.1,STRG.14169.2,STRG.14169.3,Trinity_GG_24917_c0_g1_i2,blat.proc3829893.chain_2574,blat.proc3829893.chain_2575,blat.proc3829893.chain_2576	7
scaffold_10	starts_in_intron	13002680	13002680	+	asmbl_4846	none	blat.proc3829877.chain_1479	1	STRG.12901.1,STRG.12901.2,STRG.12901.3,blat.proc3829877.chain_1477,blat.proc3829877.chain_1478,blat.proc3829877.chain_1480	6
scaffold_14	retained_intron	6553331	6553641	-	asmbl_13122	none	STRG.17088.2	1	STRG.17088.1	1
scaffold_22	retained_intron	214606	214723	+	asmbl_29112,asmbl_29114	none	STRG.24661.1,STRG.24661.5,Trinity_GG_13639_c0_g1_i4,blat.proc3829883.chain_1716,blat.proc3829883.chain_1718	5	STRG.24661.2,STRG.24661.3,STRG.24661.4,STRG.24661.6,blat.proc3829883.chain_1717	5
scaffold_15	alt_donor	4786942	4786943	-	asmbl_15166	none	STRG.18181.2,blat.proc3829895.chain_2915	2	STRG.18181.1	1
scaffold_18	retained_intron	8913428	8913585	-	asmbl_20076,asmbl_20079,asmbl_20080,asmbl_20084,asmbl_20085	none	STRG.21550.3,STRG.21550.4,STRG.21550.6,blat.proc3829897.chain_2395,blat.proc3829897.chain_2398	5	blat.proc3829897.chain_2394	1
scaffold_5	alt_acceptor	7409209	7409210	-	asmbl_45559,asmbl_45560	none	STRG.6135.2,STRG.6135.3	2	STRG.6135.1	1
scaffold_23	alt_acceptor	10404996	10404997	+	asmbl_31151	none	STRG.26227.1,blat.proc3829883.chain_3160	2	STRG.26227.2	1
scaffold_6	retained_intron	13246578	13246726	-	asmbl_48840	none	blat.proc3829891.chain_387	1	STRG.8078.1,STRG.8078.2	2
scaffold_17	alternate_exon	5071270	5071327	+	asmbl_17935,asmbl_17936	none	STRG.20221.4,STRG.20221.5	2	STRG.20221.1,STRG.20221.2,STRG.20221.3,Trinity_GG_11042_c0_g1_i2,Trinity_GG_11042_c0_g1_i3,blat.proc3829881.chain_970,blat.proc3829881.chain_971	7
scaffold_5	spliced_intron	5061484	5061828	+	asmbl_44006	none	STRG.5955.1,blat.proc3829873.chain_2052	2	Trinity_GG_3232_c0_g1_i2,Trinity_GG_3232_c0_g1_i3,blat.proc3829873.chain_2050,blat.proc3829873.chain_2051	4
scaffold_20	skipped_exon	10671068	10671939	+	asmbl_26134	none	STRG.23587.2	1	STRG.23587.1,blat.proc3829883.chain_730,blat.proc3829883.chain_731	3
scaffold_8	retained_intron	4852903	4853082	+	asmbl_51847	none	Trinity_GG_5535_c0_g1_i4,blat.proc3829875.chain_2450	2	STRG.9942.1,STRG.9942.2,Trinity_GG_5535_c0_g1_i1,blat.proc3829875.chain_2451,blat.proc3829875.chain_2454,blat.proc3829875.chain_2455,blat.proc3829875.chain_2456	7
scaffold_13	retained_intron	2652683	2652800	-	asmbl_9428	none	blat.proc3829895.chain_305	1	STRG.15566.1,STRG.15566.2,blat.proc3829895.chain_303,blat.proc3829895.chain_304	4
scaffold_1	starts_in_intron	13831466	13831466	+	asmbl_2300	none	STRG.989.2,Trinity_GG_606_c0_g1_i1,blat.proc3829871.chain_1080	3	STRG.989.1,blat.proc3829871.chain_1079	2
scaffold_6	ends_in_intron	4584219	4584219	-	asmbl_48286	none	STRG.7431.2	1	STRG.7431.1	1
scaffold_22	retained_intron	4189098	4189298	+	asmbl_29263,asmbl_29264	none	STRG.24817.1,blat.proc3829883.chain_1841	2	STRG.24817.2,blat.proc3829883.chain_1840	2
scaffold_28	retained_intron	5010558	5011216	+	asmbl_38255	none	blat.proc3829885.chain_2751	1	STRG.29628.1,blat.proc3829885.chain_2752	2
scaffold_20	alt_acceptor	8339140	8339141	-	asmbl_26900,asmbl_26901,asmbl_26903,asmbl_26904,asmbl_26905,asmbl_26906,asmbl_26907	none	STRG.23364.1,STRG.23364.2,STRG.23364.3,blat.proc3829899.chain_430,blat.proc3829899.chain_431,blat.proc3829899.chain_432,blat.proc3829899.chain_433,blat.proc3829899.chain_434,blat.proc3829899.chain_435	9	blat.proc3829899.chain_429	1
scaffold_21	retained_exon	256485	256535	-	asmbl_27313,asmbl_27322,asmbl_27323	none	STRG.23718.1,STRG.23718.7,Trinity_GG_30232_c0_g1_i4,blat.proc3829899.chain_786,blat.proc3829899.chain_790	5	STRG.23718.8,blat.proc3829899.chain_781	2
scaffold_23	starts_in_intron	4225515	4225515	-	asmbl_31572	none	blat.proc3829899.chain_2948	1	STRG.25818.1,STRG.25818.2,STRG.25818.3,STRG.25818.5,blat.proc3829899.chain_2943,blat.proc3829899.chain_2944,blat.proc3829899.chain_2945,blat.proc3829899.chain_2946,blat.proc3829899.chain_2949	9
scaffold_5	spliced_intron	13110778	13111063	+	asmbl_44527	none	STRG.6539.1,blat.proc3829873.chain_2680	2	Trinity_GG_3572_c0_g1_i1,blat.proc3829873.chain_2681	2
scaffold_14	alt_acceptor	13222048	13222049	+	asmbl_12447,asmbl_12451	none	STRG.17600.1,blat.proc3829879.chain_2204	2	STRG.17600.2,STRG.17600.3,STRG.17600.4,STRG.17600.5,blat.proc3829879.chain_2203,blat.proc3829879.chain_2205	6
scaffold_21	alternate_exon	7726086	7726193	+	asmbl_28782	none	STRG.24301.3	1	STRG.24301.1	1
scaffold_1	spliced_intron	14355835	14355968	-	asmbl_906	none	blat.proc3829887.chain_907	1	blat.proc3829887.chain_908	1
scaffold_5	retained_exon	14261869	14261931	+	asmbl_44590	none	blat.proc3829873.chain_2769	1	STRG.6629.1,STRG.6629.2,blat.proc3829873.chain_2764,blat.proc3829873.chain_2767	4
scaffold_21	starts_in_intron	3971191	3971191	-	asmbl_27584	none	blat.proc3829899.chain_1036	1	STRG.23966.1,STRG.23966.2,blat.proc3829899.chain_1037,blat.proc3829899.chain_1038	4
scaffold_25	alt_donor	6073510	6073511	-	asmbl_34287,asmbl_34297	none	STRG.27475.1,blat.proc3829901.chain_725,blat.proc3829901.chain_726	3	STRG.27475.2,blat.proc3829901.chain_724	2
scaffold_9	alternate_exon	11796217	11796697	-	asmbl_55265,asmbl_55266	none	STRG.11484.3,STRG.11484.5,Trinity_GG_23344_c1_g1_i1,blat.proc3829891.chain_3595	4	STRG.11484.1,STRG.11484.2,blat.proc3829891.chain_3590,blat.proc3829891.chain_3591,blat.proc3829891.chain_3593	5
scaffold_28	alt_donor	761504	761505	-	asmbl_37258	none	STRG.29273.4	1	STRG.29273.1,STRG.29273.3	2
scaffold_17	alt_acceptor	3844463	3844464	+	asmbl_17870	none	blat.proc3829881.chain_937	1	STRG.20133.1,blat.proc3829881.chain_938,blat.proc3829881.chain_939	3
scaffold_2	skipped_exon	14391396	14392464	+	asmbl_24957	none	STRG.2437.3,blat.proc3829871.chain_2618	2	STRG.2437.1,STRG.2437.2,blat.proc3829871.chain_2619	3
scaffold_17	starts_in_intron	11262763	11262763	+	asmbl_18334	none	Trinity_GG_11340_c0_g1_i1,blat.proc3829881.chain_1513	2	STRG.20674.1	1
scaffold_10	skipped_exon	16258018	16259449	+	asmbl_4981,asmbl_4982	none	STRG.13097.2,Trinity_GG_7185_c0_g1_i2,blat.proc3829877.chain_1597,blat.proc3829877.chain_1598	4	STRG.13097.1,STRG.13097.3	2
scaffold_17	alt_acceptor	10000183	10000184	+	asmbl_18273,asmbl_18274	none	STRG.20601.1,blat.proc3829881.chain_1435,blat.proc3829881.chain_1436	3	STRG.20601.2	1
scaffold_13	starts_in_intron	663857	663857	-	asmbl_9330	none	Trinity_GG_25669_c0_g1_i2,blat.proc3829895.chain_179	2	STRG.15439.1,STRG.15439.2,Trinity_GG_25669_c0_g1_i3,Trinity_GG_25669_c0_g1_i4,Trinity_GG_25669_c0_g1_i5,Trinity_GG_25669_c0_g1_i6,blat.proc3829895.chain_176,blat.proc3829895.chain_177,blat.proc3829895.chain_178,blat.proc3829895.chain_180	10
scaffold_6	alt_donor	3326080	3326081	+	asmbl_46776,asmbl_46777	none	STRG.7331.1,STRG.7331.2,blat.proc3829873.chain_3376,blat.proc3829873.chain_3377	4	STRG.7331.3	1
scaffold_4	alt_acceptor	14024304	14024305	-	asmbl_41774	none	STRG.5022.1,blat.proc3829889.chain_984	2	STRG.5022.2	1
scaffold_28	retained_intron	2724883	2725090	+	asmbl_38101	none	STRG.29438.3,Trinity_GG_16338_c0_g1_i5,blat.proc3829885.chain_2566	3	STRG.29438.1,STRG.29438.2,blat.proc3829885.chain_2562,blat.proc3829885.chain_2563	4
scaffold_23	alt_donor	1140015	1140016	-	asmbl_31346	none	blat.proc3829899.chain_2599	1	STRG.25575.1,STRG.25575.2,blat.proc3829899.chain_2600,blat.proc3829899.chain_2601,blat.proc3829899.chain_2603	5
scaffold_9	retained_intron	6901990	6902110	-	asmbl_55047,asmbl_55050,asmbl_55052,asmbl_55055,asmbl_55057,asmbl_55058	none	STRG.11191.3,STRG.11191.4,STRG.11191.5,blat.proc3829891.chain_3366,blat.proc3829891.chain_3367,blat.proc3829891.chain_3370,blat.proc3829891.chain_3374	7	STRG.11191.1,STRG.11191.2,blat.proc3829891.chain_3368,blat.proc3829891.chain_3369,blat.proc3829891.chain_3371,blat.proc3829891.chain_3372,blat.proc3829891.chain_3373,blat.proc3829891.chain_3375	8
scaffold_24	spliced_intron	1064378	1064557	+	asmbl_32074	none	STRG.26360.5	1	STRG.26360.1,STRG.26360.4,Trinity_GG_14583_c0_g1_i4,blat.proc3829883.chain_3295,blat.proc3829883.chain_3296	5
scaffold_27	retained_exon	932682	932837	-	asmbl_36670,asmbl_36671	none	STRG.28569.1,STRG.28569.2,blat.proc3829901.chain_1746,blat.proc3829901.chain_1747,blat.proc3829901.chain_1748	5	STRG.28569.3	1
scaffold_24	retained_intron	9128917	9129415	+	asmbl_32521	none	STRG.26921.1,blat.proc3829885.chain_8	2	STRG.26921.2,blat.proc3829885.chain_9	2
scaffold_19	alt_donor	12207952	12207953	+	asmbl_22569	none	STRG.22538.1,Trinity_GG_12469_c0_g1_i1,blat.proc3829881.chain_3486	3	STRG.22538.3,Trinity_GG_12469_c0_g1_i5,blat.proc3829881.chain_3484	3
scaffold_13	spliced_intron	2274573	2274820	-	asmbl_9402,asmbl_9403	none	STRG.15533.1,blat.proc3829895.chain_308,blat.proc3829895.chain_316	3	STRG.15533.2,blat.proc3829895.chain_310,blat.proc3829895.chain_311,blat.proc3829895.chain_317	4
scaffold_14	starts_in_intron	3404699	3404699	+	asmbl_11919	none	Trinity_GG_9299_c0_g1_i1	1	STRG.16910.1	1
scaffold_11	retained_intron	8105125	8105409	+	asmbl_5696	none	blat.proc3829877.chain_2300	1	STRG.13811.1,STRG.13811.2,STRG.13811.3,STRG.13811.4,blat.proc3829877.chain_2298,blat.proc3829877.chain_2299,blat.proc3829877.chain_2301,blat.proc3829877.chain_2303	8
scaffold_15	ends_in_intron	6881767	6881767	-	asmbl_15275,asmbl_15276,asmbl_15277,asmbl_15278,asmbl_15279,asmbl_15285,asmbl_15287	none	STRG.18290.2,STRG.18290.3,STRG.18290.4,STRG.18290.5,STRG.18290.6,Trinity_GG_27246_c0_g1_i4,Trinity_GG_27246_c0_g1_i5,blat.proc3829895.chain_2934,blat.proc3829895.chain_2935,blat.proc3829895.chain_2937,blat.proc3829895.chain_2941,blat.proc3829895.chain_2942	12	STRG.18290.1,blat.proc3829895.chain_2936,blat.proc3829895.chain_2938,blat.proc3829895.chain_2939,blat.proc3829895.chain_2940	5
scaffold_17	retained_intron	11050768	11050865	+	asmbl_18323,asmbl_18324	none	STRG.20651.1,Trinity_GG_11327_c0_g1_i6,blat.proc3829881.chain_1493,blat.proc3829881.chain_1494,blat.proc3829881.chain_1495	5	STRG.20651.2	1
scaffold_14	alternate_exon	4144684	4153500	+	asmbl_11955,asmbl_11957	none	STRG.16957.1,STRG.16957.3	2	Trinity_GG_9341_c0_g1_i2	1
scaffold_13	spliced_intron	272420	275404	+	asmbl_10439	none	blat.proc3829879.chain_127	1	STRG.15416.1,blat.proc3829879.chain_125	2
scaffold_5	starts_in_intron	8675147	8675147	+	asmbl_44224	none	Trinity_GG_3348_c1_g1_i1,blat.proc3829873.chain_2284	2	STRG.6198.1,STRG.6198.2,blat.proc3829873.chain_2281,blat.proc3829873.chain_2282,blat.proc3829873.chain_2283	5
scaffold_23	alternate_exon	2627067	2633996	+	asmbl_30713	none	STRG.25710.3,Trinity_GG_14194_c0_g1_i2,blat.proc3829883.chain_2621	3	Trinity_GG_14194_c0_g1_i4,blat.proc3829883.chain_2617	2
scaffold_5	ends_in_intron	13244735	13244735	+	asmbl_44543	none	Trinity_GG_3585_c1_g1_i1,blat.proc3829873.chain_2707	2	STRG.6561.1,STRG.6561.2,STRG.6561.3,blat.proc3829873.chain_2703,blat.proc3829873.chain_2704,blat.proc3829873.chain_2706	6
scaffold_18	alternate_exon	6774402	6776185	-	asmbl_19953	none	STRG.21372.2	1	STRG.21372.3,blat.proc3829897.chain_2244	2
scaffold_12	alternate_exon	9690021	9690148	-	asmbl_7817,asmbl_7818	none	STRG.14929.2,STRG.14929.4,Trinity_GG_25344_c0_g1_i1,Trinity_GG_25344_c0_g1_i5,blat.proc3829893.chain_3334,blat.proc3829893.chain_3335	6	STRG.14929.5	1
scaffold_8	skipped_exon	12326039	12326530	-	asmbl_53193,asmbl_53196	none	STRG.10399.4,blat.proc3829891.chain_2531	2	STRG.10399.1,STRG.10399.2,blat.proc3829891.chain_2527,blat.proc3829891.chain_2530	4
scaffold_26	alt_acceptor	3561642	3561643	+	asmbl_35322,asmbl_35323,asmbl_35326	none	STRG.28018.1,STRG.28018.2,STRG.28018.4,blat.proc3829885.chain_1005	4	STRG.28018.3,blat.proc3829885.chain_1001	2
scaffold_2	spliced_intron	8059380	8059478	-	asmbl_23331	none	STRG.2094.3	1	STRG.2094.1,Trinity_GG_18182_c0_g1_i1,blat.proc3829887.chain_1998	3
scaffold_2	alt_acceptor	10645093	10645094	-	asmbl_23446	none	STRG.2223.1	1	STRG.2223.2	1
scaffold_13	alt_donor	5804903	5804904	+	asmbl_10882	none	STRG.15880.4	1	blat.proc3829879.chain_647	1
scaffold_6	alt_donor	17883866	17883867	-	asmbl_49150	none	STRG.8474.4	1	STRG.8474.1,STRG.8474.3,Trinity_GG_21830_c0_g1_i2,blat.proc3829891.chain_767	4
scaffold_14	retained_exon	6901924	6901956	+	asmbl_12091	none	STRG.17115.1,blat.proc3829879.chain_1881	2	STRG.17115.2,blat.proc3829879.chain_1882	2
scaffold_2	alt_donor	4680572	4680573	+	asmbl_24396,asmbl_24400	none	STRG.1894.1,blat.proc3829871.chain_1884,blat.proc3829871.chain_1885	3	blat.proc3829871.chain_1886	1
scaffold_10	alt_donor	4715920	4715921	-	asmbl_3222	none	STRG.12286.1,blat.proc3829893.chain_750	2	STRG.12286.2	1
scaffold_6	alternate_exon	12994820	13003403	-	asmbl_48804	none	STRG.8061.5,blat.proc3829891.chain_273	2	STRG.8061.9,blat.proc3829891.chain_276	2
scaffold_15	retained_intron	15355271	15355426	+	asmbl_14706,asmbl_14707,asmbl_14708,asmbl_14711,asmbl_14712	none	STRG.18909.1,STRG.18909.3,Trinity_GG_10368_c0_g1_i7,Trinity_GG_10368_c0_g1_i9,blat.proc3829879.chain_3502,blat.proc3829879.chain_3503,blat.proc3829879.chain_3504,blat.proc3829879.chain_3505	8	blat.proc3829879.chain_3500	1
scaffold_9	retained_intron	16569591	16569821	+	asmbl_54574	none	Trinity_GG_6586_c0_g1_i21,blat.proc3829877.chain_554	2	Trinity_GG_6586_c0_g1_i14,Trinity_GG_6586_c0_g1_i23,blat.proc3829877.chain_552,blat.proc3829877.chain_558	4
scaffold_2	spliced_intron	9262531	9262914	-	asmbl_23389	none	STRG.2172.1,blat.proc3829887.chain_2082	2	STRG.2172.2,STRG.2172.3,blat.proc3829887.chain_2083	3
scaffold_21	retained_intron	2497047	2497201	+	asmbl_28417,asmbl_28418	none	STRG.23864.2,Trinity_GG_13219_c0_g1_i3,Trinity_GG_13219_c0_g1_i4,blat.proc3829883.chain_1006,blat.proc3829883.chain_1009	5	STRG.23864.1,Trinity_GG_13219_c0_g1_i2,blat.proc3829883.chain_1007,blat.proc3829883.chain_1008	4
scaffold_14	retained_intron	14251277	14251622	-	asmbl_13666	none	STRG.17671.2,Trinity_GG_26920_c0_g1_i3,blat.proc3829895.chain_2381,blat.proc3829895.chain_2383	4	STRG.17671.1,blat.proc3829895.chain_2382	2
scaffold_21	alternate_exon	27165	27337	-	asmbl_27289	none	STRG.23697.1,Trinity_GG_30205_c0_g1_i1,blat.proc3829899.chain_722	3	STRG.23697.2,Trinity_GG_30205_c0_g1_i2,blat.proc3829899.chain_721	3
scaffold_23	alt_acceptor	4449748	4449749	-	asmbl_31591	none	STRG.25842.2	1	STRG.25842.1,STRG.25842.3,Trinity_GG_31473_c0_g1_i1,Trinity_GG_31473_c0_g1_i4,blat.proc3829899.chain_2970,blat.proc3829899.chain_2971	6
scaffold_15	alt_acceptor	6960861	6960862	+	asmbl_14214	none	blat.proc3829879.chain_2933	1	STRG.18295.1,STRG.18295.2	2
scaffold_10	retained_intron	8319997	8320745	-	asmbl_3489	none	STRG.12583.1	1	STRG.12583.2	1
scaffold_27	ends_in_intron	627069	627069	-	asmbl_36656,asmbl_36657	none	Trinity_GG_32986_c0_g1_i1,Trinity_GG_32986_c0_g1_i5,blat.proc3829901.chain_1751,blat.proc3829901.chain_1753	4	STRG.28563.1,STRG.28563.2,STRG.28563.4,blat.proc3829901.chain_1749,blat.proc3829901.chain_1752	5
scaffold_15	retained_intron	12000429	12000658	-	asmbl_15566,asmbl_15568	none	Trinity_GG_27487_c0_g1_i4,blat.proc3829895.chain_3419,blat.proc3829895.chain_3421	3	STRG.18630.2,STRG.18630.3,Trinity_GG_27487_c0_g1_i1,Trinity_GG_27487_c0_g1_i7,blat.proc3829895.chain_3418,blat.proc3829895.chain_3420	6
scaffold_13	alt_acceptor	11586688	11586689	+	asmbl_11275,asmbl_11276	none	STRG.16295.2,blat.proc3829879.chain_1015,blat.proc3829879.chain_1018	3	STRG.16295.3,blat.proc3829879.chain_1019,blat.proc3829879.chain_1020	3
scaffold_22	spliced_intron	237472	237591	+	asmbl_29119	none	STRG.24664.1,blat.proc3829883.chain_1699	2	blat.proc3829883.chain_1698	1
scaffold_4	retained_exon	7151690	7151793	+	asmbl_42806,asmbl_42807	none	STRG.4558.1,STRG.4558.5	2	STRG.4558.2,STRG.4558.3,STRG.4558.4,blat.proc3829873.chain_883,blat.proc3829873.chain_884	5
scaffold_6	alt_acceptor	10365798	10365799	-	asmbl_48623	none	STRG.7865.1,blat.proc3829891.chain_129	2	STRG.7865.2	1
scaffold_16	alternate_exon	13213506	13213568	+	asmbl_17459	none	STRG.19770.3	1	STRG.19770.1,STRG.19770.2,blat.proc3829881.chain_595,blat.proc3829881.chain_596,blat.proc3829881.chain_598	5
scaffold_27	alternate_exon	4803905	4804238	-	asmbl_36929	none	STRG.28895.2	1	STRG.28895.3,Trinity_GG_33154_c1_g1_i1,blat.proc3829901.chain_2011	3
scaffold_13	spliced_intron	7934786	7934861	-	asmbl_9874,asmbl_9875	none	STRG.16055.1,STRG.16055.2,blat.proc3829895.chain_798,blat.proc3829895.chain_800	4	STRG.16055.3,blat.proc3829895.chain_799,blat.proc3829895.chain_803	3
scaffold_1	ends_in_intron	970700	970700	-	asmbl_41	none	blat.proc3829885.chain_3721	1	STRG.57.1,STRG.57.2,Trinity_GG_17049_c1_g1_i1,Trinity_GG_17049_c1_g1_i2,Trinity_GG_17049_c1_g1_i4,blat.proc3829885.chain_3719,blat.proc3829885.chain_3720,blat.proc3829885.chain_3722	8
scaffold_17	retained_intron	9454795	9455479	+	asmbl_18213,asmbl_18214	none	STRG.20557.2,STRG.20557.3	2	STRG.20557.1,STRG.20557.4,Trinity_GG_11275_c0_g1_i11,Trinity_GG_11275_c0_g1_i3,Trinity_GG_11275_c0_g1_i7,Trinity_GG_11275_c0_g1_i8,blat.proc3829881.chain_1391,blat.proc3829881.chain_1393,blat.proc3829881.chain_1394,blat.proc3829881.chain_1395	10
scaffold_21	alternate_exon	1756164	1758796	-	asmbl_27446	none	STRG.23809.1,blat.proc3829899.chain_888	2	STRG.23809.3	1
scaffold_9	retained_intron	8948604	8948646	-	asmbl_55121	none	Trinity_GG_23217_c0_g1_i2,blat.proc3829891.chain_3335	2	STRG.11270.1	1
scaffold_19	alternate_exon	9457177	9459937	+	asmbl_22396,asmbl_22397	none	STRG.22365.1,STRG.22365.3,Trinity_GG_12370_c0_g1_i1,Trinity_GG_12370_c0_g1_i2,blat.proc3829881.chain_3303,blat.proc3829881.chain_3304,blat.proc3829881.chain_3306	7	STRG.22365.2,blat.proc3829881.chain_3308	2
scaffold_28	starts_in_intron	55722	55722	-	asmbl_37206	none	blat.proc3829901.chain_2320	1	STRG.29222.1,blat.proc3829901.chain_2317,blat.proc3829901.chain_2318	3
scaffold_5	alt_donor	4698130	4698131	+	asmbl_43955	none	STRG.5917.6	1	STRG.5917.5,STRG.5917.7,blat.proc3829873.chain_2095,blat.proc3829873.chain_2096	4
scaffold_14	alternate_exon	4600626	4600683	+	asmbl_11978	none	STRG.16979.1,Trinity_GG_9304_c0_g1_i1,blat.proc3829879.chain_1646	3	STRG.16979.2	1
scaffold_21	alt_acceptor	11903453	11903454	+	asmbl_28951	none	STRG.24629.2	1	STRG.24629.1	1
scaffold_4	starts_in_intron	6563303	6563303	+	asmbl_42740	none	blat.proc3829873.chain_853	1	STRG.4513.1,blat.proc3829873.chain_852	2
scaffold_1	alt_acceptor	20755349	20755350	+	asmbl_2642	none	blat.proc3829871.chain_1474	1	STRG.1421.2,blat.proc3829871.chain_1475	2
scaffold_14	alt_donor	2464705	2464706	-	asmbl_12936	none	STRG.16842.1,blat.proc3829895.chain_1549	2	STRG.16842.2,STRG.16842.4	2
scaffold_14	spliced_intron	15565904	15565930	+	asmbl_12606	none	blat.proc3829879.chain_2468	1	STRG.17784.1	1
scaffold_22	alt_donor	6155315	6155316	-	asmbl_30078,asmbl_30080	none	STRG.24952.2,STRG.24952.3,blat.proc3829899.chain_2024	3	STRG.24952.1,blat.proc3829899.chain_2022,blat.proc3829899.chain_2023	3
scaffold_11	alternate_exon	12410267	12410342	-	asmbl_7067	none	STRG.14149.3,blat.proc3829893.chain_2537	2	STRG.14149.1	1
scaffold_20	retained_intron	7471394	7471647	-	asmbl_26826	none	Trinity_GG_30045_c0_g1_i4,blat.proc3829899.chain_392	2	blat.proc3829899.chain_393	1
scaffold_12	ends_in_intron	14266862	14266862	+	asmbl_9050	none	blat.proc3829877.chain_3685	1	STRG.15250.1,blat.proc3829877.chain_3683	2
scaffold_13	spliced_intron	2340633	2341002	+	asmbl_10575,asmbl_10576,asmbl_10578,asmbl_10579,asmbl_10580,asmbl_10581,asmbl_10582,asmbl_10583,asmbl_10584,asmbl_10585,asmbl_10588,asmbl_10589,asmbl_10590	none	STRG.15543.3,STRG.15543.4,STRG.15543.6,STRG.15543.7,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_156,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161,blat.proc3829879.chain_162	13	STRG.15543.10,STRG.15543.11,blat.proc3829879.chain_163,blat.proc3829879.chain_164	4
scaffold_21	alt_donor	2654439	2654440	-	asmbl_27516	none	STRG.23889.4	1	STRG.23889.1,Trinity_GG_30293_c0_g1_i10,Trinity_GG_30293_c0_g1_i6,blat.proc3829899.chain_910,blat.proc3829899.chain_915	5
scaffold_18	alternate_exon	12403946	12404372	-	asmbl_20172	none	STRG.21698.2,blat.proc3829897.chain_2491	2	blat.proc3829897.chain_2489	1
scaffold_12	starts_in_intron	7392036	7392036	-	asmbl_7707	none	blat.proc3829893.chain_3230	1	STRG.14814.1,blat.proc3829893.chain_3229,blat.proc3829893.chain_3231	3
scaffold_17	alt_donor	6214583	6214584	+	asmbl_17971	none	STRG.20291.1,Trinity_GG_11080_c0_g1_i2,blat.proc3829881.chain_1032	3	STRG.20291.2	1
scaffold_2	retained_intron	8302850	8304172	+	asmbl_24660,asmbl_24661	none	STRG.2116.3,STRG.2116.4,Trinity_GG_1209_c0_g1_i3,blat.proc3829871.chain_2251	4	STRG.2116.1,STRG.2116.5,blat.proc3829871.chain_2249	3
scaffold_11	alt_donor	5716322	5716323	+	asmbl_5547	none	Trinity_GG_7505_c0_g1_i2,blat.proc3829877.chain_2121	2	STRG.13626.1,Trinity_GG_7505_c0_g1_i1,blat.proc3829877.chain_2122	3
scaffold_11	retained_intron	10144217	10144522	-	asmbl_6961,asmbl_6963	none	STRG.14016.1,Trinity_GG_24849_c0_g1_i1	2	STRG.14016.2	1
scaffold_15	skipped_exon	149248	152081	-	asmbl_14921	none	STRG.17865.5	1	STRG.17865.2,blat.proc3829895.chain_2599	2
scaffold_23	alternate_exon	760176	760209	-	asmbl_31324	none	Trinity_GG_31289_c0_g1_i2	1	STRG.25547.1,blat.proc3829899.chain_2638	2
scaffold_11	alt_donor	3698054	3698055	+	asmbl_5416	none	STRG.13477.1,blat.proc3829877.chain_1950	2	STRG.13477.2	1
scaffold_18	spliced_intron	11472870	11472947	+	asmbl_20968	none	STRG.21671.1,blat.proc3829881.chain_2630	2	STRG.21671.2,Trinity_GG_11977_c0_g1_i2,blat.proc3829881.chain_2629	3
scaffold_4	retained_exon	3237420	3237960	-	asmbl_41164	none	STRG.4247.2,blat.proc3829889.chain_367	2	STRG.4247.4	1
scaffold_1	alternate_exon	20757070	20757999	+	asmbl_2639	none	STRG.1421.1,blat.proc3829871.chain_1476	2	STRG.1421.2,blat.proc3829871.chain_1474,blat.proc3829871.chain_1475	3
scaffold_5	starts_in_intron	9820074	9820074	+	asmbl_44317	none	Trinity_GG_3424_c0_g1_i3	1	STRG.6291.1,blat.proc3829873.chain_2416	2
scaffold_27	starts_in_intron	6072564	6072564	+	asmbl_36328	none	Trinity_GG_16041_c0_g1_i4,blat.proc3829885.chain_2115	2	STRG.28987.1,STRG.28987.2,STRG.28987.3,blat.proc3829885.chain_2112,blat.proc3829885.chain_2113	5
scaffold_14	ends_in_intron	3097272	3097272	+	asmbl_11871	none	blat.proc3829879.chain_1618	1	STRG.16888.1,blat.proc3829879.chain_1617,blat.proc3829879.chain_1619	3
scaffold_9	starts_in_intron	9704823	9704823	+	asmbl_54221	none	blat.proc3829877.chain_114	1	STRG.11336.1,STRG.11336.2,STRG.11336.3,STRG.11336.5,blat.proc3829877.chain_109,blat.proc3829877.chain_110,blat.proc3829877.chain_112	7
scaffold_3	alt_acceptor	11980542	11980543	+	asmbl_40336,asmbl_40337	none	STRG.3621.1,STRG.3621.2,Trinity_GG_2035_c0_g1_i1,Trinity_GG_2035_c0_g1_i2,Trinity_GG_2035_c0_g2_i1,blat.proc3829873.chain_20,blat.proc3829873.chain_21,blat.proc3829873.chain_23	8	STRG.3621.3	1
scaffold_23	alternate_exon	2306388	2307212	+	asmbl_30686	none	STRG.25687.2,Trinity_GG_14156_c0_g1_i4,blat.proc3829883.chain_2533	3	STRG.25687.1,blat.proc3829883.chain_2529,blat.proc3829883.chain_2531	3
scaffold_10	alt_donor	393199	393200	+	asmbl_4136,asmbl_4140	none	STRG.11918.2,STRG.11918.3,Trinity_GG_6634_c0_g1_i2,blat.proc3829877.chain_629	4	STRG.11918.1,Trinity_GG_6634_c0_g1_i1,blat.proc3829877.chain_628	3
scaffold_1	retained_intron	854040	854190	+	asmbl_1426	none	STRG.42.1	1	STRG.42.5	1
scaffold_23	spliced_intron	2608885	2609300	-	asmbl_31469,asmbl_31470,asmbl_31471,asmbl_31472	none	STRG.25709.1,STRG.25709.2,STRG.25709.3,blat.proc3829899.chain_2842,blat.proc3829899.chain_2843,blat.proc3829899.chain_2846	6	blat.proc3829899.chain_2844	1
scaffold_15	retained_intron	15416820	15416897	-	asmbl_15795	none	blat.proc3829895.chain_3620	1	STRG.18923.5,blat.proc3829895.chain_3621	2
scaffold_3	alternate_exon	14921916	14922134	-	asmbl_39381	none	STRG.3831.2,blat.proc3829887.chain_3584	2	STRG.3831.1,blat.proc3829887.chain_3585	2
scaffold_17	alt_donor	4284440	4284441	-	asmbl_18889,asmbl_18891	none	STRG.20169.1,blat.proc3829897.chain_1100,blat.proc3829897.chain_1102	3	blat.proc3829897.chain_1101	1
scaffold_23	spliced_intron	6633740	6633978	+	asmbl_30928,asmbl_30930,asmbl_30931,asmbl_30933,asmbl_30934,asmbl_30935,asmbl_30936	none	STRG.25985.1,STRG.25985.2,blat.proc3829883.chain_2811,blat.proc3829883.chain_2812,blat.proc3829883.chain_2813,blat.proc3829883.chain_2814,blat.proc3829883.chain_2816,blat.proc3829883.chain_2817	8	blat.proc3829883.chain_2815	1
scaffold_28	alt_donor	4202584	4202585	+	asmbl_38222	none	STRG.29593.3	1	STRG.29593.1,STRG.29593.2,Trinity_GG_16421_c0_g1_i6,blat.proc3829885.chain_2728	4
scaffold_10	spliced_intron	3426012	3426415	+	asmbl_4319	none	STRG.12173.1,blat.proc3829877.chain_784	2	blat.proc3829877.chain_783	1
scaffold_25	spliced_intron	9337552	9337746	+	asmbl_33799,asmbl_33800,asmbl_33801	none	STRG.27743.1,blat.proc3829885.chain_770,blat.proc3829885.chain_773,blat.proc3829885.chain_774	4	blat.proc3829885.chain_772	1
scaffold_26	starts_in_intron	6704209	6704209	-	asmbl_34972	none	blat.proc3829901.chain_1522	1	STRG.28358.1,STRG.28358.2,STRG.28358.3,blat.proc3829901.chain_1521,blat.proc3829901.chain_1523,blat.proc3829901.chain_1524	6
scaffold_9	spliced_intron	13368752	13368963	-	asmbl_55405	none	STRG.11627.1,blat.proc3829891.chain_3740	2	Trinity_GG_23423_c0_g1_i2,blat.proc3829891.chain_3739	2
scaffold_2	alternate_exon	7874655	7880737	+	asmbl_24622	none	Trinity_GG_1183_c0_g1_i2,blat.proc3829871.chain_2181	2	Trinity_GG_1183_c0_g1_i20,blat.proc3829871.chain_2183	2
scaffold_10	alternate_exon	13283808	13288408	-	asmbl_3771,asmbl_3772	none	STRG.12910.2,STRG.12910.4,blat.proc3829893.chain_1434,blat.proc3829893.chain_1435	4	STRG.12910.3	1
scaffold_8	spliced_intron	11851123	11851344	+	asmbl_52269,asmbl_52270,asmbl_52271,asmbl_52272,asmbl_52274,asmbl_52276,asmbl_52277,asmbl_52278,asmbl_52279,asmbl_52282,asmbl_52283,asmbl_52284	none	STRG.10382.2,STRG.10382.3,blat.proc3829875.chain_2967,blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970,blat.proc3829875.chain_2971,blat.proc3829875.chain_2975,blat.proc3829875.chain_2976,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978,blat.proc3829875.chain_2979,blat.proc3829875.chain_2980	13	blat.proc3829875.chain_2966,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973	3
scaffold_28	alt_donor	4581039	4581040	-	asmbl_37540,asmbl_37541	none	STRG.29613.1,STRG.29613.2,blat.proc3829901.chain_2738,blat.proc3829901.chain_2740	4	blat.proc3829901.chain_2739	1
scaffold_13	alt_donor	11981351	11981352	-	asmbl_10081	none	blat.proc3829895.chain_1066	1	STRG.16317.1	1
scaffold_6	spliced_intron	7185667	7185920	-	asmbl_48416,asmbl_48417	none	STRG.7616.1,STRG.7616.2,blat.proc3829889.chain_3621,blat.proc3829889.chain_3623	4	blat.proc3829889.chain_3622	1
scaffold_1	skipped_exon	6830975	6831856	-	asmbl_394	none	STRG.478.2,blat.proc3829887.chain_369	2	STRG.478.1,blat.proc3829887.chain_368	2
scaffold_3	spliced_intron	4268351	4268565	-	asmbl_38749	none	STRG.3118.3,Trinity_GG_18712_c0_g1_i1,blat.proc3829887.chain_2883	3	STRG.3118.1,Trinity_GG_18712_c0_g1_i2,blat.proc3829887.chain_2882	3
scaffold_28	starts_in_intron	5398168	5398168	-	asmbl_37614	none	blat.proc3829901.chain_2796	1	STRG.29665.1,Trinity_GG_33647_c0_g1_i3,blat.proc3829901.chain_2797	3
scaffold_8	starts_in_intron	5310291	5310291	-	asmbl_52820	none	Trinity_GG_22579_c0_g1_i1,blat.proc3829891.chain_2133	2	STRG.9960.1	1
scaffold_19	alt_acceptor	6213528	6213529	+	asmbl_22202,asmbl_22204	none	STRG.22141.2,STRG.22141.3,blat.proc3829881.chain_3088,blat.proc3829881.chain_3089	4	STRG.22141.1,blat.proc3829881.chain_3090	2
scaffold_26	starts_in_intron	1862934	1862934	-	asmbl_34690,asmbl_34692	none	STRG.27918.1,blat.proc3829901.chain_1153	2	STRG.27918.2	1
scaffold_28	alt_donor	2893191	2893192	+	asmbl_38111	none	STRG.29457.1,blat.proc3829885.chain_2533	2	STRG.29457.2,blat.proc3829885.chain_2532	2
scaffold_7	retained_intron	10910943	10910963	-	asmbl_49955	none	STRG.9240.3,blat.proc3829891.chain_1470	2	STRG.9240.2	1
scaffold_6	skipped_exon	885682	886780	-	asmbl_48032	none	STRG.7153.1	1	STRG.7153.2,STRG.7153.3	2
scaffold_15	skipped_exon	3916766	3918067	+	asmbl_14056	none	STRG.18133.1,Trinity_GG_9957_c1_g1_i1	2	STRG.18133.2	1
scaffold_11	retained_intron	7091036	7091125	+	asmbl_5623	none	blat.proc3829877.chain_2204	1	STRG.13727.1,blat.proc3829877.chain_2203	2
scaffold_22	skipped_exon	7691662	7693717	+	asmbl_29505	none	STRG.25104.1	1	STRG.25104.2,blat.proc3829883.chain_2073	2
scaffold_25	alt_donor	5568187	5568188	-	asmbl_34243	none	STRG.27439.2,Trinity_GG_32384_c0_g1_i1,blat.proc3829901.chain_739	3	STRG.27439.1,Trinity_GG_32384_c0_g1_i2,blat.proc3829901.chain_738	3
scaffold_7	spliced_intron	13546262	13546404	+	asmbl_51240,asmbl_51243	none	STRG.9465.1,blat.proc3829875.chain_1926,blat.proc3829875.chain_1929	3	blat.proc3829875.chain_1928	1
scaffold_12	retained_intron	12349852	12350033	+	asmbl_8961	none	Trinity_GG_8344_c0_g1_i2,blat.proc3829877.chain_3602	2	STRG.15126.1,Trinity_GG_8344_c0_g1_i1,blat.proc3829877.chain_3600,blat.proc3829877.chain_3601	4
scaffold_27	alt_donor	290541	290542	-	asmbl_36608	none	STRG.28536.2,blat.proc3829901.chain_1714	2	STRG.28536.1,blat.proc3829901.chain_1712	2
scaffold_6	alt_acceptor	9138716	9138717	+	asmbl_47149,asmbl_47157	none	blat.proc3829875.chain_196,blat.proc3829875.chain_198	2	STRG.7784.1,STRG.7784.2,STRG.7784.3,STRG.7784.4,STRG.7784.5,blat.proc3829875.chain_195,blat.proc3829875.chain_197,blat.proc3829875.chain_200,blat.proc3829875.chain_201,blat.proc3829875.chain_202,blat.proc3829875.chain_203,blat.proc3829875.chain_204	12
scaffold_15	retained_intron	8828920	8829390	+	asmbl_14302	none	Trinity_GG_10116_c0_g1_i2,blat.proc3829879.chain_3053	2	STRG.18418.1,blat.proc3829879.chain_3054,blat.proc3829879.chain_3055	3
scaffold_6	retained_intron	384396	384552	+	asmbl_46607	none	blat.proc3829873.chain_3248	1	STRG.7091.1,blat.proc3829873.chain_3247	2
scaffold_2	retained_exon	16357572	16357813	+	asmbl_25151	none	STRG.2573.1,blat.proc3829871.chain_2761	2	STRG.2573.2,STRG.2573.3,blat.proc3829871.chain_2760	3
scaffold_12	alt_acceptor	135962	135963	+	asmbl_8403	none	STRG.14421.2	1	blat.proc3829877.chain_2914	1
scaffold_6	spliced_intron	13167852	13167977	-	asmbl_48824,asmbl_48827	none	STRG.8067.1,blat.proc3829891.chain_381,blat.proc3829891.chain_383	3	STRG.8067.2,Trinity_GG_21606_c0_g1_i2,blat.proc3829891.chain_380	3
scaffold_7	alt_donor	14730150	14730151	+	asmbl_51283	none	STRG.9499.1,Trinity_GG_5232_c0_g1_i1,blat.proc3829875.chain_1876	3	STRG.9499.2	1
scaffold_20	spliced_intron	11950865	11950950	-	asmbl_27134,asmbl_27136	none	blat.proc3829899.chain_603,blat.proc3829899.chain_606	2	blat.proc3829899.chain_605	1
scaffold_22	retained_intron	6131523	6131689	+	asmbl_29398	none	STRG.24955.7	1	STRG.24955.3,blat.proc3829883.chain_2007,blat.proc3829883.chain_2009	3
scaffold_25	spliced_intron	6303359	6303523	+	asmbl_33608,asmbl_33614	none	STRG.27516.1,blat.proc3829885.chain_465	2	blat.proc3829885.chain_464,blat.proc3829885.chain_467,blat.proc3829885.chain_469,blat.proc3829885.chain_470,blat.proc3829885.chain_471,blat.proc3829885.chain_472,blat.proc3829885.chain_473,blat.proc3829885.chain_474	8
scaffold_17	alt_acceptor	14543346	14543347	+	asmbl_18528,asmbl_18529,asmbl_18530,asmbl_18532	none	STRG.20918.1,STRG.20918.2,STRG.20918.3,STRG.20918.4	4	STRG.20918.5	1
scaffold_27	starts_in_intron	3130463	3130463	+	asmbl_36149	none	Trinity_GG_15900_c2_g1_i1,blat.proc3829885.chain_1771	2	STRG.28778.3	1
scaffold_28	alt_acceptor	754642	754643	-	asmbl_37254,asmbl_37257,asmbl_37258	none	STRG.29273.2,STRG.29273.3,STRG.29273.4,blat.proc3829901.chain_2376	4	STRG.29273.1	1
scaffold_19	starts_in_intron	12107231	12107231	-	asmbl_21673	none	blat.proc3829897.chain_3210	1	STRG.22526.1,STRG.22526.2,STRG.22526.3,STRG.22526.4,blat.proc3829897.chain_3209,blat.proc3829897.chain_3211,blat.proc3829897.chain_3212	7
scaffold_7	alt_donor	12452711	12452712	-	asmbl_50040,asmbl_50042	none	STRG.9342.2,blat.proc3829891.chain_1605,blat.proc3829891.chain_1608	3	STRG.9342.4	1
scaffold_2	starts_in_intron	888505	888505	+	asmbl_24151,asmbl_24153	none	Trinity_GG_856_c0_g1_i2,blat.proc3829871.chain_1549,blat.proc3829871.chain_1550	3	STRG.1564.1,STRG.1564.2,STRG.1564.3,STRG.1564.4,STRG.1564.5,blat.proc3829871.chain_1546	6
scaffold_6	skipped_exon	3320407	3320916	-	asmbl_48194	none	STRG.7329.4	1	STRG.7329.1,STRG.7329.3,blat.proc3829889.chain_3341	3
scaffold_15	skipped_exon	6884687	6887444	-	asmbl_15279,asmbl_15281,asmbl_15282,asmbl_15283,asmbl_15285,asmbl_15286,asmbl_15287	none	STRG.18290.1,STRG.18290.2,STRG.18290.5,blat.proc3829895.chain_2933,blat.proc3829895.chain_2934,blat.proc3829895.chain_2936,blat.proc3829895.chain_2940,blat.proc3829895.chain_2942	8	STRG.18290.3,STRG.18290.6,blat.proc3829895.chain_2937,blat.proc3829895.chain_2939	4
scaffold_2258	skipped_exon	158	811	-	asmbl_30575	none	STRG.30708.1	1	STRG.30708.2	1
scaffold_9	starts_in_intron	5669149	5669149	+	asmbl_54053	none	blat.proc3829875.chain_3635	1	STRG.11128.1,blat.proc3829875.chain_3636,blat.proc3829875.chain_3638	3
scaffold_17	spliced_intron	7850236	7850403	+	asmbl_18054,asmbl_18055,asmbl_18056	none	STRG.20399.1,STRG.20399.2,STRG.20399.3	3	Trinity_GG_11175_c1_g1_i1,blat.proc3829881.chain_1177	2
scaffold_27	alternate_exon	1402338	1402442	+	asmbl_35961	none	STRG.28602.2	1	STRG.28602.1	1
scaffold_9	retained_intron	6290195	6290500	+	asmbl_54074	none	STRG.11156.2,blat.proc3829875.chain_3603	2	STRG.11156.1,blat.proc3829875.chain_3604	2
scaffold_21	spliced_intron	2497047	2497201	+	asmbl_28416,asmbl_28419	none	STRG.23864.1,Trinity_GG_13219_c0_g1_i2,blat.proc3829883.chain_1007,blat.proc3829883.chain_1008	4	STRG.23864.2,Trinity_GG_13219_c0_g1_i3,Trinity_GG_13219_c0_g1_i4,blat.proc3829883.chain_1006,blat.proc3829883.chain_1009	5
scaffold_19	retained_intron	8526	8631	+	asmbl_21970	none	STRG.21807.2	1	STRG.21807.3	1
scaffold_10	spliced_intron	3758123	3758321	-	asmbl_3136	none	STRG.12200.2	1	STRG.12200.1,STRG.12200.4	2
scaffold_20	alt_acceptor	8116515	8116516	-	asmbl_26882	none	STRG.23348.2,blat.proc3829899.chain_419,blat.proc3829899.chain_422	3	STRG.23348.1,blat.proc3829899.chain_421	2
scaffold_26	alt_acceptor	9840009	9840010	-	asmbl_35066	none	STRG.28525.1,Trinity_GG_32930_c0_g1_i1,blat.proc3829901.chain_1622	3	blat.proc3829901.chain_1620	1
scaffold_1	retained_intron	6283222	6283603	-	asmbl_345,asmbl_352	none	STRG.425.5,blat.proc3829887.chain_325	2	STRG.425.1,STRG.425.3,STRG.425.4,blat.proc3829887.chain_328,blat.proc3829887.chain_334	5
scaffold_15	starts_in_intron	12430604	12430604	+	asmbl_14510	none	blat.proc3829879.chain_3280	1	STRG.18688.1,blat.proc3829879.chain_3286	2
scaffold_4	alternate_exon	7657675	7659040	-	asmbl_41468	none	STRG.4595.2,blat.proc3829889.chain_639	2	STRG.4595.1	1
scaffold_2	spliced_intron	8857714	8857736	+	asmbl_24683	none	STRG.2137.2	1	STRG.2137.1	1
scaffold_4	alt_donor	5231129	5231130	-	asmbl_41309,asmbl_41312	none	STRG.4417.1,STRG.4417.3,blat.proc3829889.chain_436,blat.proc3829889.chain_439	4	STRG.4417.4,blat.proc3829889.chain_438	2
scaffold_10	alternate_exon	13472425	13472470	-	asmbl_3793	none	blat.proc3829893.chain_1419	1	STRG.12931.3	1
scaffold_16	alt_donor	9632362	9632363	-	asmbl_16471	none	STRG.19549.1,Trinity_GG_27988_c0_g1_i1,blat.proc3829897.chain_562	3	Trinity_GG_27988_c0_g1_i2,blat.proc3829897.chain_563	2
scaffold_9	alternate_exon	13854306	13858476	-	asmbl_55413	none	blat.proc3829893.chain_32	1	blat.proc3829893.chain_36	1
scaffold_13	alt_donor	13559115	13559116	+	asmbl_11372	none	STRG.16395.2	1	STRG.16395.1	1
scaffold_15	retained_exon	3917382	3917412	+	asmbl_14057	none	STRG.18133.2	1	STRG.18133.1,Trinity_GG_9957_c1_g1_i1	2
scaffold_26	spliced_intron	9843220	9843299	+	asmbl_35804,asmbl_35809	none	STRG.28526.3,blat.proc3829885.chain_1560	2	blat.proc3829885.chain_1566	1
scaffold_16	retained_intron	6196265	6196569	+	asmbl_17087,asmbl_17088,asmbl_17089,asmbl_17090,asmbl_17092	none	STRG.19373.3,STRG.19373.4,blat.proc3829881.chain_126,blat.proc3829881.chain_128,blat.proc3829881.chain_129	5	STRG.19373.1,STRG.19373.2,blat.proc3829881.chain_125,blat.proc3829881.chain_127,blat.proc3829881.chain_130,blat.proc3829881.chain_131	6
scaffold_3	ends_in_intron	19883375	19883375	-	asmbl_39615,asmbl_39617,asmbl_39618	none	Trinity_GG_19264_c0_g1_i3,blat.proc3829889.chain_136	2	STRG.4100.1,STRG.4100.2,STRG.4100.4,blat.proc3829889.chain_137	4
scaffold_18	skipped_exon	2832889	2835573	+	asmbl_20448	none	STRG.21133.2,blat.proc3829881.chain_1915,blat.proc3829881.chain_1923	3	STRG.21133.1,blat.proc3829881.chain_1916	2
scaffold_14	retained_intron	1325764	1325879	+	asmbl_11792	none	Trinity_GG_9241_c0_g1_i3,blat.proc3829879.chain_1516	2	STRG.16771.1,blat.proc3829879.chain_1515	2
scaffold_28	alt_acceptor	7881064	7881065	-	asmbl_37757,asmbl_37759	none	blat.proc3829901.chain_2975,blat.proc3829901.chain_2978	2	STRG.29846.1,blat.proc3829901.chain_2977	2
scaffold_20	alt_donor	10132434	10132435	+	asmbl_26090	none	blat.proc3829883.chain_650	1	STRG.23543.2	1
scaffold_17	ends_in_intron	536195	536195	+	asmbl_17675	none	blat.proc3829881.chain_741	1	STRG.19892.1,STRG.19892.2,STRG.19892.3,STRG.19892.4,blat.proc3829881.chain_739,blat.proc3829881.chain_740,blat.proc3829881.chain_742,blat.proc3829881.chain_743,blat.proc3829881.chain_744	9
scaffold_21	retained_intron	3189776	3190483	+	asmbl_28497	none	blat.proc3829883.chain_1041	1	STRG.23934.1,blat.proc3829883.chain_1042	2
scaffold_1	alternate_exon	8632804	8633664	-	asmbl_469	none	STRG.568.3,blat.proc3829887.chain_445	2	STRG.568.1,blat.proc3829887.chain_447,blat.proc3829887.chain_448	3
scaffold_15	alt_donor	4231266	4231267	+	asmbl_14074	none	blat.proc3829879.chain_2811	1	STRG.18160.2,blat.proc3829879.chain_2806,blat.proc3829879.chain_2808	3
scaffold_5	starts_in_intron	6021539	6021539	-	asmbl_45473	none	Trinity_GG_20402_c0_g1_i1	1	STRG.6014.1,blat.proc3829889.chain_2106	2
scaffold_22	starts_in_intron	1707744	1707744	-	asmbl_29912	none	Trinity_GG_30839_c1_g1_i1,blat.proc3829899.chain_1871	2	STRG.24746.1,STRG.24746.2,Trinity_GG_30839_c0_g1_i1,Trinity_GG_30839_c0_g1_i3,blat.proc3829899.chain_1868,blat.proc3829899.chain_1870	6
scaffold_10	ends_in_intron	548030	548030	-	asmbl_2880,asmbl_2881	none	STRG.11927.2,STRG.11927.3,Trinity_GG_23639_c0_g1_i3,Trinity_GG_23639_c0_g1_i5,blat.proc3829893.chain_353,blat.proc3829893.chain_354	6	STRG.11927.1	1
scaffold_17	retained_exon	2358163	2358219	+	asmbl_17768,asmbl_17769	none	STRG.20017.2,STRG.20017.7	2	STRG.20017.4,STRG.20017.5,STRG.20017.6	3
scaffold_13	spliced_intron	7668097	7668467	+	asmbl_11054	none	STRG.16037.2	1	STRG.16037.1,Trinity_GG_8821_c1_g1_i1,blat.proc3829879.chain_774	3
scaffold_17	retained_exon	8613560	8613604	+	asmbl_18131,asmbl_18132,asmbl_18133	none	STRG.20462.3,STRG.20462.4,STRG.20462.5,blat.proc3829881.chain_1266,blat.proc3829881.chain_1267,blat.proc3829881.chain_1268,blat.proc3829881.chain_1269,blat.proc3829881.chain_1271	8	STRG.20462.1,blat.proc3829881.chain_1270	2
scaffold_9	ends_in_intron	2451574	2451574	-	asmbl_54839	none	Trinity_GG_23068_c0_g1_i2,blat.proc3829891.chain_3064	2	STRG.10881.1,Trinity_GG_23068_c0_g1_i1,blat.proc3829891.chain_3065	3
scaffold_19	starts_in_intron	13011728	13011728	-	asmbl_21801	none	blat.proc3829897.chain_3403	1	STRG.22610.1,STRG.22610.2,STRG.22610.3,blat.proc3829897.chain_3402,blat.proc3829897.chain_3404	5
scaffold_5	alt_donor	5738210	5738211	+	asmbl_44029	none	blat.proc3829873.chain_2048	1	STRG.5984.4	1
scaffold_4	retained_intron	3383834	3383996	+	asmbl_42521	none	blat.proc3829873.chain_588	1	STRG.4269.1,blat.proc3829873.chain_586	2
scaffold_20	alternate_exon	11482107	11482674	+	asmbl_26212,asmbl_26214	none	STRG.23639.4,Trinity_GG_13053_c0_g1_i3,blat.proc3829883.chain_716	3	STRG.23639.3,blat.proc3829883.chain_715	2
scaffold_17	skipped_exon	8605578	8605835	-	asmbl_19150	none	STRG.20461.2,Trinity_GG_28522_c1_g1_i1,blat.proc3829897.chain_1429	3	STRG.20461.1,Trinity_GG_28522_c1_g2_i1,blat.proc3829897.chain_1430	3
scaffold_28	alt_donor	4194305	4194306	-	asmbl_37521	none	STRG.29591.2,blat.proc3829901.chain_2718	2	STRG.29591.1,blat.proc3829901.chain_2720	2
scaffold_13	retained_intron	4459323	4459424	+	asmbl_10774,asmbl_10776,asmbl_10780,asmbl_10781	none	STRG.15755.3,STRG.15755.4,Trinity_GG_8663_c0_g1_i6,Trinity_GG_8663_c0_g1_i7,blat.proc3829879.chain_451,blat.proc3829879.chain_453	6	STRG.15755.1,STRG.15755.2,blat.proc3829879.chain_448,blat.proc3829879.chain_449,blat.proc3829879.chain_450,blat.proc3829879.chain_452	6
scaffold_4	alt_acceptor	8081251	8081252	+	asmbl_42870	none	STRG.4622.1,blat.proc3829873.chain_1017	2	STRG.4622.2	1
scaffold_5	spliced_intron	15044032	15044157	-	asmbl_46015	none	STRG.6692.5	1	STRG.6692.4	1
scaffold_12	retained_exon	13031511	13031581	-	asmbl_8034	none	blat.proc3829893.chain_3570	1	STRG.15173.1,STRG.15173.2,STRG.15173.3,blat.proc3829893.chain_3571	4
scaffold_16	skipped_exon	442634	443818	-	asmbl_16038,asmbl_16043	none	STRG.19039.1,STRG.19039.4	2	blat.proc3829897.chain_32	1
scaffold_17	starts_in_intron	3037452	3037452	-	asmbl_18840	none	blat.proc3829897.chain_1040	1	STRG.20080.4,blat.proc3829897.chain_1039	2
scaffold_8	starts_in_intron	23524	23524	-	asmbl_52674	none	blat.proc3829891.chain_1955	1	STRG.9695.2	1
scaffold_26	starts_in_intron	4679586	4679586	-	asmbl_34858	none	STRG.28174.2	1	STRG.28174.1	1
scaffold_2	spliced_intron	7468981	7469051	-	asmbl_23283,asmbl_23284,asmbl_23286	none	STRG.2075.3,STRG.2075.4,Trinity_GG_18127_c0_g1_i18,Trinity_GG_18127_c0_g1_i23,blat.proc3829887.chain_1889,blat.proc3829887.chain_1893	6	STRG.2075.2,blat.proc3829887.chain_1892,blat.proc3829887.chain_1898	3
scaffold_506	alt_donor	2365	2366	+	asmbl_46455,asmbl_46456	none	STRG.30329.1,STRG.30329.2,blat.proc3829885.chain_3372,blat.proc3829885.chain_3374	4	blat.proc3829885.chain_3371,blat.proc3829885.chain_3373	2
scaffold_21	starts_in_intron	2496159	2496159	+	asmbl_28418,asmbl_28419	none	Trinity_GG_13219_c0_g1_i2,Trinity_GG_13219_c0_g1_i3,blat.proc3829883.chain_1006,blat.proc3829883.chain_1007	4	STRG.23864.1,blat.proc3829883.chain_1008	2
scaffold_2	starts_in_intron	11475608	11475608	-	asmbl_23468,asmbl_23469	none	STRG.2265.1,STRG.2265.3,Trinity_GG_18293_c0_g1_i2,Trinity_GG_18293_c0_g1_i3,blat.proc3829887.chain_2172,blat.proc3829887.chain_2174	6	STRG.2265.2,Trinity_GG_18293_c0_g1_i1,blat.proc3829887.chain_2173	3
scaffold_13	alternate_exon	13273407	13273440	+	asmbl_11363	none	STRG.16385.2	1	STRG.16385.1,blat.proc3829879.chain_1112	2
scaffold_20	spliced_intron	11695106	11695430	-	asmbl_27113	none	STRG.23665.1,blat.proc3829899.chain_667	2	blat.proc3829899.chain_666	1
scaffold_1	ends_in_intron	11544111	11544111	+	asmbl_2104	none	Trinity_GG_419_c0_g1_i2	1	STRG.760.1,Trinity_GG_419_c0_g1_i1,blat.proc3829871.chain_729	3
scaffold_1	spliced_intron	12450016	12450376	+	asmbl_2201,asmbl_2202,asmbl_2204	none	STRG.856.2,STRG.856.4,STRG.856.5,Trinity_GG_494_c0_g1_i1,blat.proc3829871.chain_884	5	STRG.856.1,blat.proc3829871.chain_881	2
scaffold_12	spliced_intron	7534953	7535423	+	asmbl_8728	none	STRG.14820.1,Trinity_GG_8178_c0_g1_i1,blat.proc3829877.chain_3298	3	Trinity_GG_8178_c0_g1_i2,blat.proc3829877.chain_3299	2
scaffold_6	alt_donor	14622697	14622698	-	asmbl_48952	none	blat.proc3829891.chain_467	1	STRG.8218.5	1
scaffold_14	alt_acceptor	9071607	9071608	+	asmbl_12252	none	STRG.17304.1,blat.proc3829879.chain_2036	2	STRG.17304.2,blat.proc3829879.chain_2037	2
scaffold_8	skipped_exon	10238810	10239921	+	asmbl_52152	none	STRG.10282.2,blat.proc3829875.chain_2792	2	STRG.10282.1,blat.proc3829875.chain_2790,blat.proc3829875.chain_2791	3
scaffold_8	skipped_exon	16505056	16507019	-	asmbl_53418,asmbl_53422,asmbl_53424,asmbl_53428	none	STRG.10621.5,blat.proc3829891.chain_2860,blat.proc3829891.chain_2864,blat.proc3829891.chain_2869	4	STRG.10621.1,STRG.10621.3,STRG.10621.4,blat.proc3829891.chain_2859,blat.proc3829891.chain_2862,blat.proc3829891.chain_2865,blat.proc3829891.chain_2871	7
scaffold_21	starts_in_intron	7811910	7811910	-	asmbl_27872	none	STRG.24304.2,blat.proc3829899.chain_1365	2	STRG.24304.1,STRG.24304.3,blat.proc3829899.chain_1364	3
scaffold_2	alt_acceptor	13053020	13053021	+	asmbl_24840	none	STRG.2328.2,blat.proc3829871.chain_2428	2	STRG.2328.1,blat.proc3829871.chain_2429	2
scaffold_2	retained_exon	17613833	17615047	+	asmbl_25220	none	STRG.2650.2,blat.proc3829871.chain_2856	2	STRG.2650.3	1
scaffold_1	spliced_intron	5207359	5207851	+	asmbl_1702,asmbl_1707,asmbl_1709,asmbl_1712	none	STRG.323.1,STRG.323.2,blat.proc3829871.chain_390,blat.proc3829871.chain_392,blat.proc3829871.chain_394	5	blat.proc3829871.chain_393,blat.proc3829871.chain_395	2
scaffold_8	alt_donor	5966311	5966312	+	asmbl_51903,asmbl_51904	none	STRG.9998.1,blat.proc3829875.chain_2511,blat.proc3829875.chain_2512	3	STRG.9998.2	1
scaffold_2	retained_intron	15271311	15271411	+	asmbl_25036	none	blat.proc3829871.chain_2535	1	STRG.2481.1,blat.proc3829871.chain_2524,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2528,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2536,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	11
scaffold_13	alt_acceptor	9337886	9337887	-	asmbl_9982,asmbl_9983,asmbl_9985	none	STRG.16186.1,STRG.16186.3,STRG.16186.4,blat.proc3829895.chain_952,blat.proc3829895.chain_954	5	STRG.16186.2	1
scaffold_15	retained_intron	15917540	15917607	+	asmbl_14796,asmbl_14799	none	STRG.18967.4,Trinity_GG_10379_c1_g1_i2,blat.proc3829879.chain_3527	3	STRG.18967.1,STRG.18967.2,STRG.18967.3,Trinity_GG_10379_c1_g1_i1,blat.proc3829879.chain_3526	5
scaffold_17	starts_in_intron	544720	544720	+	asmbl_17681	none	blat.proc3829881.chain_736	1	STRG.19891.1,Trinity_GG_10901_c0_g1_i2,blat.proc3829881.chain_737	3
scaffold_1	spliced_intron	3270179	3270864	-	asmbl_139,asmbl_141	none	STRG.199.1,blat.proc3829887.chain_97,blat.proc3829887.chain_99	3	blat.proc3829887.chain_98	1
scaffold_8	retained_intron	11278090	11278313	-	asmbl_53141	none	STRG.10339.2,Trinity_GG_22740_c0_g1_i4,blat.proc3829891.chain_2437	3	STRG.10339.1,STRG.10339.3,STRG.10339.4,blat.proc3829891.chain_2438,blat.proc3829891.chain_2439,blat.proc3829891.chain_2440	6
scaffold_4	retained_intron	3237101	3237225	-	asmbl_41163,asmbl_41165	none	Trinity_GG_19386_c0_g1_i6,blat.proc3829889.chain_369,blat.proc3829889.chain_371	3	STRG.4247.1,STRG.4247.2,STRG.4247.3,STRG.4247.4,blat.proc3829889.chain_367	5
scaffold_19	retained_intron	96182	96339	-	asmbl_21187	none	Trinity_GG_29184_c0_g1_i3,blat.proc3829897.chain_2591	2	STRG.21815.2,Trinity_GG_29184_c0_g1_i1,blat.proc3829897.chain_2590	3
scaffold_5	spliced_intron	19031727	19031895	-	asmbl_46260,asmbl_46269	none	STRG.7018.4,blat.proc3829889.chain_3003,blat.proc3829889.chain_3006	3	STRG.7018.6,blat.proc3829889.chain_3007	2
scaffold_4	alt_donor	13113610	13113611	-	asmbl_41715,asmbl_41716,asmbl_41719	none	STRG.4951.1,STRG.4951.3,STRG.4951.4,blat.proc3829889.chain_1007,blat.proc3829889.chain_1009	5	STRG.4951.2,blat.proc3829889.chain_1008	2
scaffold_11	retained_intron	8719314	8719523	-	asmbl_6856	none	Trinity_GG_24779_c0_g2_i1,blat.proc3829893.chain_2331	2	Trinity_GG_24779_c0_g2_i2,blat.proc3829893.chain_2335	2
scaffold_5	retained_intron	15765826	15766010	+	asmbl_44679	none	Trinity_GG_3692_c0_g1_i6,blat.proc3829873.chain_2879	2	STRG.6763.1,blat.proc3829873.chain_2874,blat.proc3829873.chain_2875,blat.proc3829873.chain_2876,blat.proc3829873.chain_2877,blat.proc3829873.chain_2880,blat.proc3829873.chain_2882	7
scaffold_5	ends_in_intron	10308054	10308054	+	asmbl_44340	none	blat.proc3829873.chain_2479	1	blat.proc3829873.chain_2476	1
scaffold_14	starts_in_intron	10480683	10480683	+	asmbl_12304	none	Trinity_GG_9560_c0_g1_i1,blat.proc3829879.chain_2093	2	STRG.17382.1,STRG.17382.2,blat.proc3829879.chain_2095	3
scaffold_20	alternate_exon	7808342	7810091	-	asmbl_26844	none	STRG.23317.1,Trinity_GG_30035_c0_g1_i1,blat.proc3829899.chain_371	3	Trinity_GG_30035_c0_g1_i2,blat.proc3829899.chain_372	2
scaffold_17	starts_in_intron	8211274	8211274	-	asmbl_19125	none	blat.proc3829897.chain_1412	1	STRG.20431.1,STRG.20431.2,blat.proc3829897.chain_1409,blat.proc3829897.chain_1410,blat.proc3829897.chain_1411	5
scaffold_22	spliced_intron	484303	485440	+	asmbl_29148	none	STRG.24679.3,Trinity_GG_13642_c0_g1_i3,blat.proc3829883.chain_1726	3	blat.proc3829883.chain_1727	1
scaffold_13	retained_intron	3734461	3734631	+	asmbl_10712	none	STRG.15686.3,Trinity_GG_8631_c0_g1_i8,blat.proc3829879.chain_390	3	Trinity_GG_8631_c0_g1_i4,Trinity_GG_8631_c0_g1_i6,blat.proc3829879.chain_395,blat.proc3829879.chain_396	4
scaffold_1	alternate_exon	3614090	3615322	-	asmbl_169	none	STRG.223.1,blat.proc3829887.chain_129	2	STRG.223.3,blat.proc3829887.chain_126	2
scaffold_6	retained_intron	12653940	12654092	+	asmbl_47365	none	Trinity_GG_4365_c0_g1_i3,blat.proc3829875.chain_368	2	blat.proc3829875.chain_365	1
scaffold_6	starts_in_intron	8954757	8954757	+	asmbl_47123	none	blat.proc3829875.chain_117	1	STRG.7769.1,STRG.7769.2,blat.proc3829875.chain_118	3
scaffold_4	starts_in_intron	10956234	10956234	+	asmbl_43024	none	blat.proc3829873.chain_1193	1	STRG.4816.1,STRG.4816.2,blat.proc3829873.chain_1190,blat.proc3829873.chain_1191,blat.proc3829873.chain_1192	5
scaffold_5	spliced_intron	10196215	10196313	-	asmbl_45702,asmbl_45704,asmbl_45706,asmbl_45708	none	STRG.6312.1,blat.proc3829889.chain_2387,blat.proc3829889.chain_2388,blat.proc3829889.chain_2389,blat.proc3829889.chain_2393	5	blat.proc3829889.chain_2386	1
scaffold_23	alt_acceptor	7001863	7001864	-	asmbl_31724	none	STRG.26005.2,Trinity_GG_31556_c0_g1_i2,blat.proc3829899.chain_3111	3	STRG.26005.1,blat.proc3829899.chain_3112	2
scaffold_10	retained_intron	13300486	13300597	+	asmbl_4865	none	blat.proc3829877.chain_1484	1	STRG.12927.1,blat.proc3829877.chain_1482,blat.proc3829877.chain_1483	3
scaffold_11	spliced_intron	15233086	15233289	+	asmbl_6090	none	Trinity_GG_7869_c0_g1_i1,blat.proc3829877.chain_2761	2	blat.proc3829877.chain_2763	1
scaffold_11	alt_acceptor	8790313	8790314	-	asmbl_6859	none	STRG.13891.4	1	STRG.13891.3	1
scaffold_12	spliced_intron	12349498	12349762	+	asmbl_8959,asmbl_8962	none	STRG.15126.1,Trinity_GG_8344_c0_g1_i1,blat.proc3829877.chain_3600,blat.proc3829877.chain_3601	4	Trinity_GG_8344_c0_g1_i2,blat.proc3829877.chain_3602	2
scaffold_23	skipped_exon	7686045	7687381	+	asmbl_31008,asmbl_31010,asmbl_31015	none	STRG.26063.1,STRG.26063.6,Trinity_GG_14406_c0_g1_i3,Trinity_GG_14406_c0_g1_i6,blat.proc3829883.chain_2977,blat.proc3829883.chain_2981	6	STRG.26063.5,STRG.26063.7,Trinity_GG_14406_c0_g1_i4,blat.proc3829883.chain_2978	4
scaffold_16	skipped_exon	7228464	7230994	-	asmbl_16347	none	STRG.19382.1	1	STRG.19382.3,STRG.19382.6,STRG.19382.7	3
scaffold_7	alternate_exon	8314299	8314474	-	asmbl_49812	none	STRG.9058.3,blat.proc3829891.chain_1326	2	STRG.9058.2,STRG.9058.4,blat.proc3829891.chain_1327	3
scaffold_6	retained_intron	16613086	16613686	+	asmbl_47650,asmbl_47652	none	STRG.8384.2,STRG.8384.3,blat.proc3829875.chain_766	3	STRG.8384.1,blat.proc3829875.chain_767,blat.proc3829875.chain_768	3
scaffold_11	alternate_exon	16252477	16256272	+	asmbl_6126	none	STRG.14318.2	1	STRG.14318.1,Trinity_GG_7848_c1_g1_i1,blat.proc3829877.chain_2720	3
scaffold_5	retained_intron	11991739	11992075	-	asmbl_45811,asmbl_45813	none	STRG.6447.4,blat.proc3829889.chain_2519,blat.proc3829889.chain_2520	3	STRG.6447.3	1
scaffold_10	skipped_exon	6598053	6598565	-	asmbl_3393,asmbl_3395	none	STRG.12472.1,blat.proc3829893.chain_937,blat.proc3829893.chain_938	3	STRG.12472.2	1
scaffold_8	starts_in_intron	18420202	18420202	-	asmbl_53553	none	Trinity_GG_22989_c0_g1_i2,blat.proc3829891.chain_2931	2	STRG.10732.1,STRG.10732.2,Trinity_GG_22989_c0_g1_i1,Trinity_GG_22989_c0_g1_i3,blat.proc3829891.chain_2930,blat.proc3829891.chain_2932	6
scaffold_15	alt_acceptor	15163559	15163560	+	asmbl_14671	none	STRG.18897.2	1	STRG.18897.1,blat.proc3829879.chain_3388	2
scaffold_21	alt_acceptor	4108940	4108941	+	asmbl_28528,asmbl_28529	none	STRG.23973.1,STRG.23973.3	2	STRG.23973.2,blat.proc3829883.chain_1131	2
scaffold_17	alt_acceptor	11334984	11334985	+	asmbl_18341	none	STRG.20675.2	1	STRG.20675.1	1
scaffold_3	alt_donor	14313189	14313190	-	asmbl_39300	none	STRG.3768.3	1	STRG.3768.1,STRG.3768.2,Trinity_GG_19099_c0_g1_i4,blat.proc3829887.chain_3566,blat.proc3829887.chain_3567	5
scaffold_8	skipped_exon	9128050	9128801	-	asmbl_53004,asmbl_53007,asmbl_53008	none	STRG.10161.2,blat.proc3829891.chain_2335,blat.proc3829891.chain_2336	3	STRG.10161.1,STRG.10161.3,STRG.10161.4	3
scaffold_4	ends_in_intron	17117376	17117376	+	asmbl_43372	none	STRG.5308.3,blat.proc3829873.chain_1591	2	STRG.5308.1	1
scaffold_3	spliced_intron	18347139	18347225	-	asmbl_39560	none	STRG.4038.1,blat.proc3829889.chain_77	2	blat.proc3829873.chain_417	1
scaffold_1	alt_acceptor	5685351	5685352	+	asmbl_1741,asmbl_1743	none	STRG.365.1,blat.proc3829871.chain_420,blat.proc3829871.chain_421	3	STRG.365.2	1
scaffold_4	alt_acceptor	4370434	4370435	+	asmbl_42569	none	blat.proc3829873.chain_725	1	STRG.4336.1,blat.proc3829873.chain_723,blat.proc3829873.chain_724	3
scaffold_18	alt_donor	2834262	2834263	+	asmbl_20450	none	STRG.21133.4,blat.proc3829881.chain_1914	2	STRG.21133.5,blat.proc3829881.chain_1917	2
scaffold_13	spliced_intron	9223165	9223239	+	asmbl_11161	none	STRG.16166.2	1	STRG.16166.1,blat.proc3829879.chain_872	2
scaffold_6	ends_in_intron	11456692	11456692	-	asmbl_48690	none	Trinity_GG_21495_c0_g1_i2,blat.proc3829891.chain_176	2	STRG.7928.1,STRG.7928.2,blat.proc3829891.chain_174,blat.proc3829891.chain_175	4
scaffold_25	retained_intron	801994	802101	-	asmbl_33992	none	STRG.27118.5,Trinity_GG_32200_c0_g1_i3,blat.proc3829901.chain_439	3	STRG.27118.1,STRG.27118.3,STRG.27118.4	3
scaffold_15	retained_intron	12597273	12597384	-	asmbl_15605,asmbl_15608	none	Trinity_GG_27520_c0_g1_i7,blat.proc3829895.chain_3479,blat.proc3829895.chain_3482	3	STRG.18702.1,Trinity_GG_27520_c0_g1_i3,Trinity_GG_27520_c0_g1_i4,Trinity_GG_27520_c0_g1_i5,blat.proc3829895.chain_3476,blat.proc3829895.chain_3478,blat.proc3829895.chain_3481	7
scaffold_20	alternate_exon	5953660	5954528	-	asmbl_26720	none	STRG.23191.2,Trinity_GG_29917_c1_g1_i1,blat.proc3829899.chain_157,blat.proc3829899.chain_164	4	STRG.23191.1,blat.proc3829899.chain_161	2
scaffold_23	retained_intron	2164418	2164645	-	asmbl_31421	none	STRG.25669.2	1	STRG.25669.6	1
scaffold_20	alt_donor	11574958	11574959	-	asmbl_27082,asmbl_27083,asmbl_27085	none	STRG.23650.1,STRG.23650.3,STRG.23650.4,blat.proc3829899.chain_596,blat.proc3829899.chain_597	5	STRG.23650.2	1
scaffold_12	starts_in_intron	4607453	4607453	+	asmbl_8576	none	blat.proc3829877.chain_3144	1	STRG.14624.1,blat.proc3829877.chain_3143	2
scaffold_6	starts_in_intron	18079006	18079006	+	asmbl_47754	none	Trinity_GG_4675_c1_g1_i1	1	STRG.8483.1,STRG.8483.2,Trinity_GG_4675_c1_g1_i2,blat.proc3829875.chain_906	4
scaffold_5	alt_donor	4696342	4696343	+	asmbl_43948,asmbl_43949	none	blat.proc3829873.chain_2093,blat.proc3829873.chain_2094	2	STRG.5917.2,STRG.5917.3,STRG.5917.4	3
scaffold_18	starts_in_intron	5565153	5565153	-	asmbl_19892	none	Trinity_GG_28951_c1_g1_i6,blat.proc3829897.chain_2185	2	STRG.21297.1,STRG.21297.2,Trinity_GG_28951_c1_g1_i5,blat.proc3829897.chain_2181,blat.proc3829897.chain_2183	5
scaffold_9	retained_intron	10063361	10063447	+	asmbl_54261,asmbl_54262	none	STRG.11355.2,STRG.11355.3,Trinity_GG_6304_c0_g1_i3,blat.proc3829877.chain_55	4	STRG.11355.1,Trinity_GG_6304_c0_g1_i1,blat.proc3829877.chain_56	3
scaffold_6	starts_in_intron	17845507	17845507	+	asmbl_47729	none	Trinity_GG_4637_c0_g1_i1,blat.proc3829875.chain_817	2	STRG.8468.1,blat.proc3829875.chain_779	2
scaffold_14	alternate_exon	10716908	10717019	+	asmbl_12326	none	STRG.17408.2	1	STRG.17408.1,Trinity_GG_9575_c0_g1_i1,Trinity_GG_9575_c0_g1_i2,blat.proc3829879.chain_2118,blat.proc3829879.chain_2119	5
scaffold_9	retained_intron	11842903	11843151	-	asmbl_55293,asmbl_55296,asmbl_55297,asmbl_55298	none	blat.proc3829891.chain_3619,blat.proc3829891.chain_3620,blat.proc3829891.chain_3622,blat.proc3829891.chain_3623,blat.proc3829891.chain_3626	5	blat.proc3829891.chain_3624,blat.proc3829891.chain_3625	2
scaffold_17	alt_donor	10193981	10193982	-	asmbl_19282	none	STRG.20627.1,blat.proc3829897.chain_1584	2	STRG.20627.2	1
scaffold_26	retained_intron	5874800	5875093	-	asmbl_34909	none	STRG.28273.1,Trinity_GG_32822_c1_g1_i1,blat.proc3829901.chain_1452	3	STRG.28273.2,Trinity_GG_32822_c0_g1_i1,blat.proc3829901.chain_1451	3
scaffold_13	alternate_exon	6299812	6299890	-	asmbl_9738	none	blat.proc3829895.chain_684	1	STRG.15911.1,blat.proc3829895.chain_685	2
scaffold_8	ends_in_intron	10864345	10864345	-	asmbl_53123	none	Trinity_GG_22766_c0_g2_i1,blat.proc3829891.chain_2483	2	STRG.10304.1,STRG.10304.2,STRG.10304.3	3
scaffold_15	starts_in_intron	10768258	10768258	+	asmbl_14407	none	STRG.18552.6	1	STRG.18552.3,STRG.18552.5,blat.proc3829879.chain_3157,blat.proc3829879.chain_3159,blat.proc3829879.chain_3160,blat.proc3829879.chain_3161,blat.proc3829879.chain_3162,blat.proc3829879.chain_3163	8
scaffold_6	alt_acceptor	4319898	4319899	+	asmbl_46822,asmbl_46824	none	STRG.7402.2,blat.proc3829873.chain_3510	2	blat.proc3829873.chain_3512	1
scaffold_1	retained_intron	14320593	14321243	+	asmbl_2360	none	blat.proc3829871.chain_1127	1	STRG.1024.1,blat.proc3829871.chain_1129	2
scaffold_12	alternate_exon	12387533	12387904	+	asmbl_8964	none	STRG.15133.2,blat.proc3829877.chain_3614	2	STRG.15133.1,blat.proc3829877.chain_3615	2
scaffold_17	alt_acceptor	7832717	7832718	-	asmbl_19098	none	STRG.20396.1,blat.proc3829897.chain_1363	2	STRG.20396.2,blat.proc3829897.chain_1364	2
scaffold_19	alt_acceptor	12392068	12392069	-	asmbl_21691,asmbl_21692,asmbl_21693,asmbl_21694	none	STRG.22557.1,STRG.22557.2,blat.proc3829897.chain_3269,blat.proc3829897.chain_3270,blat.proc3829897.chain_3271,blat.proc3829897.chain_3272	6	STRG.22557.3,blat.proc3829897.chain_3268	2
scaffold_25	retained_intron	979268	979402	+	asmbl_33352	none	Trinity_GG_14961_c2_g1_i2,blat.proc3829885.chain_197	2	blat.proc3829885.chain_198	1
scaffold_11	starts_in_intron	587246	587246	+	asmbl_5253	none	Trinity_GG_7294_c0_g1_i1,blat.proc3829877.chain_1782	2	STRG.13261.1,blat.proc3829877.chain_1781	2
scaffold_15	alternate_exon	11400341	11400430	-	asmbl_15513,asmbl_15514	none	STRG.18596.4,STRG.18596.6	2	STRG.18596.1,STRG.18596.2,STRG.18596.3,STRG.18596.5,blat.proc3829895.chain_3372,blat.proc3829895.chain_3373,blat.proc3829895.chain_3374,blat.proc3829895.chain_3375	8
scaffold_7	skipped_exon	18771443	18771809	-	asmbl_50320	none	blat.proc3829891.chain_1876	1	blat.proc3829891.chain_1879	1
scaffold_25	skipped_exon	8705312	8707661	+	asmbl_33747,asmbl_33749	none	STRG.27679.1,Trinity_GG_15273_c0_g1_i6,blat.proc3829885.chain_700,blat.proc3829885.chain_701	4	STRG.27679.3,blat.proc3829885.chain_698	2
scaffold_6	retained_intron	7937253	7938427	-	asmbl_48445,asmbl_48446,asmbl_48447,asmbl_48449,asmbl_48450	none	STRG.7666.1,blat.proc3829889.chain_3701,blat.proc3829889.chain_3702,blat.proc3829889.chain_3703,blat.proc3829889.chain_3705,blat.proc3829889.chain_3706	6	STRG.7666.2,STRG.7666.3,blat.proc3829889.chain_3704	3
scaffold_5	skipped_exon	11991739	11993287	-	asmbl_45812	none	STRG.6447.1,blat.proc3829889.chain_2521	2	STRG.6447.3,STRG.6447.4,STRG.6447.5,blat.proc3829889.chain_2519	4
scaffold_4	retained_intron	7090140	7091175	+	asmbl_42793,asmbl_42797	none	STRG.4545.1,STRG.4545.4,blat.proc3829873.chain_945	3	STRG.4545.3,blat.proc3829873.chain_943	2
scaffold_3	alternate_exon	6182618	6182663	-	asmbl_38863	none	STRG.3262.1,blat.proc3829887.chain_3017	2	STRG.3262.3,STRG.3262.4,blat.proc3829887.chain_3018	3
scaffold_1	alt_acceptor	12170008	12170009	+	asmbl_2167	none	blat.proc3829871.chain_919	1	STRG.845.2,blat.proc3829871.chain_920	2
scaffold_10	alt_donor	3757877	3757878	-	asmbl_3133	none	STRG.12200.4	1	STRG.12200.3	1
scaffold_28	ends_in_intron	9441867	9441867	-	asmbl_37844	none	blat.proc3829901.chain_3078	1	STRG.29952.1,blat.proc3829901.chain_3079	2
scaffold_2	spliced_intron	14562874	14562960	+	asmbl_24982,asmbl_24983,asmbl_24986,asmbl_24989	none	STRG.2454.1,STRG.2454.2,STRG.2454.4,STRG.2454.5	4	STRG.2454.3	1
scaffold_5	starts_in_intron	19030149	19030149	-	asmbl_46263	none	blat.proc3829889.chain_3005	1	STRG.7018.3,STRG.7018.4,STRG.7018.5,blat.proc3829889.chain_3003,blat.proc3829889.chain_3006,blat.proc3829889.chain_3008,blat.proc3829889.chain_3009	7
scaffold_1	starts_in_intron	12057773	12057773	-	asmbl_692	none	STRG.820.2,blat.proc3829887.chain_703	2	STRG.820.1,STRG.820.3,blat.proc3829887.chain_704	3
scaffold_13	skipped_exon	11598971	11600009	+	asmbl_11274,asmbl_11276,asmbl_11277,asmbl_11280	none	STRG.16295.1,STRG.16295.3,blat.proc3829879.chain_1014,blat.proc3829879.chain_1018,blat.proc3829879.chain_1019	5	STRG.16295.2,blat.proc3829879.chain_1015,blat.proc3829879.chain_1020,blat.proc3829879.chain_1023	4
scaffold_24	alt_acceptor	10379595	10379596	-	asmbl_33178	none	STRG.26979.1	1	STRG.26979.2	1
scaffold_2	alt_acceptor	7993799	7993800	-	asmbl_23321	none	STRG.2091.2	1	STRG.2091.1	1
scaffold_13	ends_in_intron	385268	385268	-	asmbl_9299	none	Trinity_GG_25648_c0_g1_i8,blat.proc3829895.chain_129	2	STRG.15422.1,STRG.15422.2,blat.proc3829895.chain_130,blat.proc3829895.chain_132	4
scaffold_2	alternate_exon	4133155	4146977	+	asmbl_24357	none	STRG.1855.1,Trinity_GG_1046_c0_g1_i1,Trinity_GG_1046_c0_g2_i1,blat.proc3829871.chain_1921,blat.proc3829871.chain_1922	5	Trinity_GG_1003_c0_g1_i2,blat.proc3829871.chain_1836	2
scaffold_25	alt_donor	5158102	5158103	-	asmbl_34225,asmbl_34227	none	STRG.27422.1,blat.proc3829901.chain_742,blat.proc3829901.chain_746,blat.proc3829901.chain_749	4	blat.proc3829901.chain_743,blat.proc3829901.chain_747	2
scaffold_12	alt_acceptor	12801742	12801743	+	asmbl_8986,asmbl_8989	none	STRG.15161.2,blat.proc3829877.chain_3578	2	STRG.15161.1,blat.proc3829877.chain_3580	2
scaffold_14	spliced_intron	1069783	1069872	+	asmbl_11764,asmbl_11765,asmbl_11766,asmbl_11771,asmbl_11772	none	STRG.16754.3,STRG.16754.4,STRG.16754.5,blat.proc3829879.chain_1436,blat.proc3829879.chain_1441	5	blat.proc3829879.chain_1439	1
scaffold_25	retained_intron	8475662	8475908	+	asmbl_33734	none	blat.proc3829885.chain_661	1	STRG.27664.1,blat.proc3829885.chain_662	2
scaffold_16	retained_intron	6137953	6138100	-	asmbl_16320	none	blat.proc3829897.chain_389	1	STRG.19336.1,blat.proc3829897.chain_388	2
scaffold_19	alt_acceptor	12492151	12492152	+	asmbl_22617,asmbl_22619,asmbl_22622	none	STRG.22568.1,STRG.22568.5,blat.proc3829881.chain_3533,blat.proc3829881.chain_3536	4	STRG.22568.2,STRG.22568.4,STRG.22568.6,blat.proc3829881.chain_3535,blat.proc3829881.chain_3537,blat.proc3829881.chain_3538	6
scaffold_5	alt_donor	6278339	6278340	-	asmbl_45475	none	STRG.6029.2	1	STRG.6029.1,blat.proc3829889.chain_2102	2
scaffold_11	alt_donor	16529945	16529946	+	asmbl_6142	none	STRG.14333.2	1	STRG.14333.1,blat.proc3829877.chain_2816	2
scaffold_26	alternate_exon	5862761	5862800	+	asmbl_35577	none	STRG.28276.2	1	STRG.28276.1,blat.proc3829885.chain_1300,blat.proc3829885.chain_1301	3
scaffold_17	starts_in_intron	11037575	11037575	-	asmbl_19310	none	blat.proc3829897.chain_1561	1	STRG.20653.3,STRG.20653.5,STRG.20653.6,STRG.20653.7,blat.proc3829897.chain_1558,blat.proc3829897.chain_1559,blat.proc3829897.chain_1562	7
scaffold_10	spliced_intron	3439144	3439233	-	asmbl_3125	none	STRG.12167.2	1	Trinity_GG_23751_c0_g1_i1,blat.proc3829893.chain_551	2
scaffold_1	retained_intron	16800305	16801968	+	asmbl_2487	none	Trinity_GG_695_c1_g1_i1,Trinity_GG_695_c1_g1_i3,blat.proc3829871.chain_1247,blat.proc3829871.chain_1249	4	STRG.1179.1,blat.proc3829871.chain_1248	2
scaffold_20	retained_intron	10069728	10069888	-	asmbl_27004	none	Trinity_GG_30137_c0_g1_i1,blat.proc3829899.chain_549	2	STRG.23536.1,STRG.23536.2,Trinity_GG_30137_c0_g1_i2,Trinity_GG_30137_c0_g1_i4,blat.proc3829899.chain_547,blat.proc3829899.chain_548	6
scaffold_19	spliced_intron	10821455	10821556	+	asmbl_22464,asmbl_22466	none	STRG.22410.1,STRG.22410.2,Trinity_GG_12375_c0_g1_i3,blat.proc3829881.chain_3323	4	blat.proc3829881.chain_3324	1
scaffold_11	retained_intron	13462735	13462822	-	asmbl_7109	none	Trinity_GG_24953_c0_g1_i1,blat.proc3829893.chain_2634	2	STRG.14196.1,STRG.14196.2,Trinity_GG_24953_c0_g1_i2,Trinity_GG_24953_c0_g1_i4,blat.proc3829893.chain_2631,blat.proc3829893.chain_2633	6
scaffold_23	alternate_exon	4226786	4232310	-	asmbl_31571,asmbl_31573	none	STRG.25818.2,blat.proc3829899.chain_2943	2	blat.proc3829899.chain_2946	1
scaffold_3	alt_donor	11978458	11978459	+	asmbl_40337	none	STRG.3621.2,Trinity_GG_2035_c0_g1_i1,blat.proc3829873.chain_20	3	STRG.3621.1,Trinity_GG_2035_c0_g1_i2,blat.proc3829873.chain_21	3
scaffold_2	alternate_exon	3491729	3492073	-	asmbl_23005	none	STRG.1782.1,blat.proc3829887.chain_1609	2	STRG.1782.2	1
scaffold_10	spliced_intron	4057996	4058495	-	asmbl_3166,asmbl_3169	none	STRG.12237.2,STRG.12237.4,blat.proc3829893.chain_709,blat.proc3829893.chain_710	4	STRG.12237.7,Trinity_GG_23849_c2_g1_i1,blat.proc3829893.chain_711,blat.proc3829893.chain_714	4
scaffold_19	spliced_intron	13161925	13162003	+	asmbl_22666,asmbl_22667,asmbl_22669	none	STRG.22627.1,STRG.22627.2,blat.proc3829881.chain_3594	3	blat.proc3829881.chain_3595	1
scaffold_13	retained_intron	8103489	8103578	+	asmbl_11085	none	blat.proc3829879.chain_814	1	STRG.16073.1,blat.proc3829879.chain_815	2
scaffold_8	starts_in_intron	14423126	14423126	-	asmbl_53320	none	STRG.10521.1,blat.proc3829891.chain_2652	2	STRG.10521.2	1
scaffold_17	spliced_intron	10050035	10050204	+	asmbl_18289	none	blat.proc3829881.chain_1429	1	STRG.20609.3,Trinity_GG_11293_c0_g1_i5,blat.proc3829881.chain_1430	3
scaffold_4	retained_intron	15678206	15678313	-	asmbl_41863	none	blat.proc3829889.chain_1192	1	STRG.5156.1,STRG.5156.2,blat.proc3829889.chain_1189,blat.proc3829889.chain_1190,blat.proc3829889.chain_1191,blat.proc3829889.chain_1193	6
scaffold_1	retained_intron	854980	855087	+	asmbl_1423,asmbl_1427	none	STRG.42.4,STRG.42.5	2	STRG.42.1,STRG.42.2,STRG.42.3	3
scaffold_25	starts_in_intron	9713426	9713426	+	asmbl_33830	none	blat.proc3829885.chain_727	1	STRG.27767.1,blat.proc3829885.chain_726	2
scaffold_6	alt_acceptor	2681833	2681834	-	asmbl_48095	none	STRG.7253.2	1	STRG.7253.1,blat.proc3829889.chain_3239	2
scaffold_7	starts_in_intron	12057334	12057334	+	asmbl_51089	none	Trinity_GG_5143_c0_g1_i2,blat.proc3829875.chain_1722,blat.proc3829875.chain_1723	3	STRG.9294.1	1
scaffold_15	skipped_exon	4230907	4231387	+	asmbl_14070,asmbl_14073,asmbl_14075,asmbl_14076	none	STRG.18160.1,blat.proc3829879.chain_2809,blat.proc3829879.chain_2810,blat.proc3829879.chain_2813,blat.proc3829879.chain_2814	5	STRG.18160.2,blat.proc3829879.chain_2806,blat.proc3829879.chain_2808,blat.proc3829879.chain_2811	4
scaffold_3	alternate_exon	3237315	3245728	+	asmbl_39899	none	STRG.3087.1,blat.proc3829871.chain_3299,blat.proc3829871.chain_3310	3	STRG.3087.5,blat.proc3829871.chain_3305	2
scaffold_2	alt_acceptor	8566880	8566881	+	asmbl_24676	none	STRG.2127.2,Trinity_GG_1204_c0_g1_i2,blat.proc3829871.chain_2242	3	STRG.2127.1,Trinity_GG_1204_c0_g1_i1,blat.proc3829871.chain_2241	3
scaffold_7	alt_donor	712465	712466	-	asmbl_49507	none	blat.proc3829891.chain_978	1	STRG.8600.1,blat.proc3829891.chain_979,blat.proc3829891.chain_980	3
scaffold_17	spliced_intron	8158916	8159004	+	asmbl_18067,asmbl_18070	none	STRG.20421.1,STRG.20421.2,blat.proc3829881.chain_1184	3	blat.proc3829881.chain_1185	1
scaffold_9	alternate_exon	648647	648813	+	asmbl_53766	none	STRG.10787.2,blat.proc3829875.chain_3294	2	STRG.10787.1,STRG.10787.4,Trinity_GG_5998_c1_g1_i1,blat.proc3829875.chain_3295,blat.proc3829875.chain_3296	5
scaffold_28	starts_in_intron	5014320	5014320	+	asmbl_38251,asmbl_38252,asmbl_38254,asmbl_38257	none	Trinity_GG_16433_c0_g2_i1,Trinity_GG_16433_c0_g2_i3,Trinity_GG_16433_c0_g2_i4,blat.proc3829885.chain_2754,blat.proc3829885.chain_2755,blat.proc3829885.chain_2756,blat.proc3829885.chain_2757	7	STRG.29628.1,Trinity_GG_16433_c0_g1_i1,blat.proc3829885.chain_2751,blat.proc3829885.chain_2752,blat.proc3829885.chain_2753	5
scaffold_12	alt_acceptor	2768505	2768506	+	asmbl_8488	none	blat.proc3829877.chain_2977	1	STRG.14511.1,blat.proc3829877.chain_2978	2
scaffold_26	starts_in_intron	4594342	4594342	-	asmbl_34843	none	blat.proc3829901.chain_1355	1	STRG.28165.3,blat.proc3829901.chain_1354	2
scaffold_9	skipped_exon	5173038	5174369	+	asmbl_53982	none	STRG.11086.3	1	STRG.11086.1	1
scaffold_9	ends_in_intron	9769899	9769899	+	asmbl_54238	none	Trinity_GG_6332_c3_g1_i1,blat.proc3829877.chain_133	2	STRG.11340.1,blat.proc3829877.chain_132	2
scaffold_7	alt_donor	7790042	7790043	-	asmbl_49789,asmbl_49790	none	STRG.9024.1,Trinity_GG_22117_c0_g1_i4,Trinity_GG_22117_c0_g1_i5,blat.proc3829891.chain_1294,blat.proc3829891.chain_1296	5	STRG.9024.2,Trinity_GG_22117_c0_g1_i2,Trinity_GG_22117_c0_g1_i7,blat.proc3829891.chain_1293,blat.proc3829891.chain_1295	5
scaffold_24	starts_in_intron	2520890	2520890	-	asmbl_32784	none	blat.proc3829899.chain_3520	1	STRG.26451.1,blat.proc3829899.chain_3521	2
scaffold_22	alt_donor	6956786	6956787	-	asmbl_30119	none	STRG.25002.1	1	STRG.25002.2,STRG.25002.3	2
scaffold_2	retained_exon	7214806	7215153	+	asmbl_24574,asmbl_24581	none	STRG.2054.1,STRG.2054.2,Trinity_GG_1174_c0_g1_i7,blat.proc3829871.chain_2154	4	STRG.2054.4,Trinity_GG_1174_c0_g1_i3,blat.proc3829871.chain_2146	3
scaffold_6	retained_intron	3320771	3320929	-	asmbl_48192	none	blat.proc3829889.chain_3343	1	STRG.7329.3,blat.proc3829889.chain_3341	2
scaffold_26	alt_acceptor	3561624	3561625	+	asmbl_35321	none	STRG.28018.3,blat.proc3829885.chain_1001	2	STRG.28018.1,STRG.28018.2,STRG.28018.4,blat.proc3829885.chain_1005	4
scaffold_23	starts_in_intron	2316840	2316840	+	asmbl_30693	none	Trinity_GG_14122_c0_g1_i1,blat.proc3829883.chain_2485	2	STRG.25680.1,Trinity_GG_14122_c0_g1_i2,Trinity_GG_14122_c0_g1_i3,blat.proc3829883.chain_2486,blat.proc3829883.chain_2487	5
scaffold_17	ends_in_intron	1303611	1303611	-	asmbl_18743,asmbl_18744,asmbl_18745	none	STRG.19954.2,blat.proc3829897.chain_928,blat.proc3829897.chain_929	3	STRG.19954.1,blat.proc3829897.chain_927,blat.proc3829897.chain_930,blat.proc3829897.chain_931,blat.proc3829897.chain_932	5
scaffold_11	alternate_exon	15830140	15833670	+	asmbl_6116	none	STRG.14312.1,blat.proc3829877.chain_2734	2	STRG.14312.4	1
scaffold_6	alt_acceptor	4152202	4152203	-	asmbl_48235	none	STRG.7383.1	1	STRG.7383.2,blat.proc3829889.chain_3417	2
scaffold_7	retained_intron	1235502	1235752	+	asmbl_50468,asmbl_50469	none	STRG.8627.6,Trinity_GG_4740_c0_g1_i13,Trinity_GG_4740_c0_g1_i14,blat.proc3829875.chain_1044,blat.proc3829875.chain_1045,blat.proc3829875.chain_1048	6	STRG.8627.3,STRG.8627.5,STRG.8627.7,STRG.8627.9	4
scaffold_9	retained_exon	17659940	17659977	-	asmbl_55631,asmbl_55633	none	STRG.11840.2,STRG.11840.3,Trinity_GG_23537_c0_g1_i1,Trinity_GG_23537_c0_g1_i4,blat.proc3829893.chain_176,blat.proc3829893.chain_177	6	STRG.11840.1,Trinity_GG_23537_c0_g1_i3,blat.proc3829893.chain_175	3
scaffold_13	alt_acceptor	9990743	9990744	+	asmbl_11209	none	STRG.16225.1,blat.proc3829879.chain_924	2	STRG.16225.2	1
scaffold_18	alt_acceptor	1394505	1394506	-	asmbl_19656,asmbl_19657,asmbl_19658	none	STRG.21014.3,blat.proc3829897.chain_1935,blat.proc3829897.chain_1937	3	STRG.21014.1,STRG.21014.2,Trinity_GG_28799_c0_g1_i5,blat.proc3829897.chain_1931,blat.proc3829897.chain_1932,blat.proc3829897.chain_1933	6
scaffold_2	ends_in_intron	5187997	5187997	-	asmbl_23161	none	Trinity_GG_18116_c0_g1_i3,blat.proc3829887.chain_1858	2	STRG.1936.1,STRG.1936.2,blat.proc3829887.chain_1855,blat.proc3829887.chain_1859,blat.proc3829887.chain_1860	5
scaffold_13	retained_intron	16434082	16434150	+	asmbl_11551	none	STRG.16683.1,blat.proc3829879.chain_1415	2	STRG.16683.2	1
scaffold_19	retained_intron	12700478	12700502	-	asmbl_21742	none	Trinity_GG_29576_c0_g1_i2,blat.proc3829897.chain_3315	2	STRG.22577.1	1
scaffold_26	alt_donor	7487883	7487884	+	asmbl_35646	none	blat.proc3829885.chain_1381	1	STRG.28365.2,blat.proc3829885.chain_1383	2
scaffold_17	starts_in_intron	2422723	2422723	+	asmbl_17778	none	blat.proc3829881.chain_860	1	STRG.20018.1,blat.proc3829881.chain_859	2
scaffold_5	spliced_intron	10852168	10852260	+	asmbl_44366,asmbl_44369,asmbl_44370,asmbl_44371,asmbl_44372,asmbl_44373	none	STRG.6350.1,STRG.6350.3,STRG.6350.4,blat.proc3829873.chain_2513,blat.proc3829873.chain_2514,blat.proc3829873.chain_2515,blat.proc3829873.chain_2516	7	blat.proc3829873.chain_2512	1
scaffold_2	starts_in_intron	32822	32822	+	asmbl_24083,asmbl_24084	none	STRG.1493.4,STRG.1493.5	2	STRG.1493.1,STRG.1493.3,blat.proc3829871.chain_1525,blat.proc3829871.chain_1527	4
scaffold_5	alt_donor	19354735	19354736	-	asmbl_46278	none	Trinity_GG_20921_c1_g1_i2,blat.proc3829889.chain_2999	2	STRG.7024.2,Trinity_GG_20921_c1_g1_i1,blat.proc3829889.chain_3000	3
scaffold_6	alt_acceptor	1350413	1350414	-	asmbl_48041,asmbl_48042	none	STRG.7176.1,STRG.7176.2,blat.proc3829889.chain_3156,blat.proc3829889.chain_3158	4	STRG.7176.3	1
scaffold_2	spliced_intron	690765	690806	+	asmbl_24115	none	STRG.1553.2	1	STRG.1553.3,blat.proc3829871.chain_1529	2
scaffold_25	retained_exon	3820184	3820299	-	asmbl_34140,asmbl_34141	none	STRG.27321.1,STRG.27321.2,Trinity_GG_32309_c0_g1_i2,blat.proc3829901.chain_622	4	Trinity_GG_32309_c0_g1_i3,blat.proc3829901.chain_623	2
scaffold_21	skipped_exon	5279754	5281553	-	asmbl_27666	none	STRG.24056.2,blat.proc3829899.chain_1146	2	STRG.24056.1,blat.proc3829899.chain_1144	2
scaffold_6	retained_exon	9910384	9910437	+	asmbl_47185	none	STRG.7827.1	1	STRG.7827.2	1
scaffold_5	spliced_intron	15767010	15767201	+	asmbl_44677,asmbl_44682,asmbl_44684,asmbl_44685	none	STRG.6763.1,blat.proc3829873.chain_2876,blat.proc3829873.chain_2877,blat.proc3829873.chain_2880,blat.proc3829873.chain_2882	5	blat.proc3829873.chain_2875	1
scaffold_9	spliced_intron	16656048	16656688	-	asmbl_55563,asmbl_55564,asmbl_55565,asmbl_55567,asmbl_55568	none	STRG.11803.1,STRG.11803.2,STRG.11803.3,STRG.11803.4,blat.proc3829893.chain_209,blat.proc3829893.chain_211,blat.proc3829893.chain_212,blat.proc3829893.chain_213	8	blat.proc3829893.chain_210	1
scaffold_9	starts_in_intron	16739491	16739491	-	asmbl_55586	none	blat.proc3829893.chain_222	1	STRG.11811.2,STRG.11811.3,Trinity_GG_23557_c0_g1_i6,blat.proc3829893.chain_219	4
scaffold_7	starts_in_intron	4056733	4056733	+	asmbl_50597	none	blat.proc3829875.chain_1127	1	STRG.8796.1,blat.proc3829875.chain_1126	2
scaffold_1	spliced_intron	907269	907398	-	asmbl_35	none	STRG.45.3	1	STRG.45.2	1
scaffold_8	starts_in_intron	17604079	17604079	+	asmbl_52487	none	Trinity_GG_5893_c0_g1_i2,blat.proc3829875.chain_3100	2	STRG.10672.1,blat.proc3829875.chain_3101	2
scaffold_27	alt_acceptor	2903102	2903103	-	asmbl_36822	none	STRG.28755.2	1	STRG.28755.1,Trinity_GG_33104_c0_g1_i2,blat.proc3829901.chain_1932	3
scaffold_10	starts_in_intron	1081102	1081102	-	asmbl_2960	none	STRG.11988.1	1	STRG.11988.2,STRG.11988.3,Trinity_GG_23654_c0_g1_i3,blat.proc3829893.chain_386	4
scaffold_2	retained_intron	17708369	17708455	-	asmbl_23752,asmbl_23754	none	STRG.2660.3,blat.proc3829887.chain_2487	2	STRG.2660.1,STRG.2660.2,blat.proc3829887.chain_2486	3
scaffold_21	alternate_exon	9882260	9882310	-	asmbl_28006	none	STRG.24436.2	1	STRG.24436.1	1
scaffold_10	starts_in_intron	4151755	4151755	-	asmbl_3179	none	STRG.12246.1	1	STRG.12246.2	1
scaffold_11	retained_intron	5651474	5651835	+	asmbl_5537	none	blat.proc3829877.chain_2115	1	STRG.13620.1,blat.proc3829877.chain_2117	2
scaffold_8	spliced_intron	9586999	9587093	+	asmbl_52069,asmbl_52071,asmbl_52072	none	STRG.10207.3,blat.proc3829875.chain_2709,blat.proc3829875.chain_2710,blat.proc3829875.chain_2713	4	blat.proc3829875.chain_2711	1
scaffold_8	ends_in_intron	11051457	11051457	+	asmbl_52178,asmbl_52180	none	STRG.10308.2,blat.proc3829875.chain_2828	2	STRG.10308.1,blat.proc3829875.chain_2826,blat.proc3829875.chain_2827	3
scaffold_723	retained_intron	794	900	-	asmbl_51571	none	blat.proc3829901.chain_3459	1	STRG.30418.1,STRG.30418.2,blat.proc3829901.chain_3460,blat.proc3829901.chain_3461,blat.proc3829901.chain_3463,blat.proc3829901.chain_3464,blat.proc3829901.chain_3465	7
scaffold_16	skipped_exon	12022195	12022875	-	asmbl_16563	none	STRG.19718.3	1	STRG.19718.2,blat.proc3829897.chain_671	2
scaffold_2	spliced_intron	892404	892512	+	asmbl_24158,asmbl_24160,asmbl_24161	none	STRG.1565.2,STRG.1565.3,blat.proc3829871.chain_1632,blat.proc3829871.chain_1636	4	STRG.1565.1,STRG.1565.4,blat.proc3829871.chain_1631,blat.proc3829871.chain_1634,blat.proc3829871.chain_1635	5
scaffold_9	retained_intron	12012109	12012204	+	asmbl_54389	none	Trinity_GG_6412_c0_g1_i2,blat.proc3829877.chain_266	2	STRG.11515.2	1
scaffold_9	ends_in_intron	9869254	9869254	-	asmbl_55210	none	Trinity_GG_23302_c0_g1_i3,blat.proc3829891.chain_3518	2	STRG.11345.1,STRG.11345.3,Trinity_GG_23302_c0_g1_i4,blat.proc3829891.chain_3522	4
scaffold_14	starts_in_intron	1601844	1601844	-	asmbl_12883	none	Trinity_GG_26418_c0_g1_i7,blat.proc3829895.chain_1498	2	STRG.16790.1,STRG.16790.2,STRG.16790.3,Trinity_GG_26418_c0_g1_i1,Trinity_GG_26418_c0_g1_i2,Trinity_GG_26418_c0_g1_i3,Trinity_GG_26418_c0_g1_i5,blat.proc3829895.chain_1494,blat.proc3829895.chain_1495,blat.proc3829895.chain_1496,blat.proc3829895.chain_1497	11
scaffold_28	skipped_exon	539383	539891	-	asmbl_37236	none	blat.proc3829901.chain_2297	1	STRG.29258.1,blat.proc3829901.chain_2296	2
scaffold_2	retained_exon	7042599	7042724	+	asmbl_24553,asmbl_24554,asmbl_24555	none	STRG.2043.1,Trinity_GG_1152_c0_g1_i1,Trinity_GG_1152_c0_g1_i3,blat.proc3829871.chain_2112,blat.proc3829871.chain_2113	5	Trinity_GG_1152_c0_g1_i2,Trinity_GG_1152_c0_g1_i5,blat.proc3829871.chain_2110,blat.proc3829871.chain_2111	4
scaffold_12	alt_acceptor	10605598	10605599	+	asmbl_8910	none	STRG.15020.4,blat.proc3829877.chain_3508	2	STRG.15020.1,blat.proc3829877.chain_3505	2
scaffold_25	alternate_exon	2955038	2955567	-	asmbl_34063	none	STRG.27220.1,Trinity_GG_32264_c0_g1_i1,blat.proc3829901.chain_499,blat.proc3829901.chain_549	4	blat.proc3829901.chain_498	1
scaffold_20	retained_exon	11482107	11482530	+	asmbl_26210	none	STRG.23639.2	1	STRG.23639.3,blat.proc3829883.chain_715	2
scaffold_19	retained_intron	12107338	12107555	-	asmbl_21670	none	STRG.22526.2,blat.proc3829897.chain_3212	2	STRG.22526.4,blat.proc3829897.chain_3209	2
scaffold_2	retained_exon	14751910	14752164	+	asmbl_25007	none	STRG.2473.1,blat.proc3829871.chain_2635	2	STRG.2473.2,blat.proc3829871.chain_2634	2
scaffold_6	alt_acceptor	3056805	3056806	+	asmbl_46745	none	blat.proc3829873.chain_3439	1	blat.proc3829873.chain_3441	1
scaffold_7	alt_donor	6043362	6043363	-	asmbl_49724,asmbl_49725	none	STRG.8899.2,STRG.8899.4	2	STRG.8899.3,STRG.8899.5,Trinity_GG_22045_c0_g1_i5,blat.proc3829891.chain_1182	4
scaffold_14	spliced_intron	151803	151904	-	asmbl_12761,asmbl_12765	none	STRG.16700.5,blat.proc3829895.chain_1383	2	STRG.16700.4,Trinity_GG_26353_c0_g1_i1,blat.proc3829895.chain_1387,blat.proc3829895.chain_1388	4
scaffold_6	alt_donor	4713214	4713215	+	asmbl_46842	none	STRG.7454.1,Trinity_GG_4062_c0_g1_i1,blat.proc3829873.chain_3538	3	STRG.7454.2,Trinity_GG_4062_c0_g1_i2,blat.proc3829873.chain_3537	3
scaffold_15	starts_in_intron	7183837	7183837	-	asmbl_15294,asmbl_15295	none	STRG.18300.1,STRG.18300.2,blat.proc3829895.chain_2964,blat.proc3829895.chain_2965	4	STRG.18300.4,blat.proc3829895.chain_2962	2
scaffold_4	retained_intron	16315868	16316019	+	asmbl_43300	none	STRG.5205.2,blat.proc3829873.chain_1512	2	STRG.5205.3,blat.proc3829873.chain_1510	2
scaffold_1	retained_intron	11396225	11396399	+	asmbl_2083	none	STRG.746.2	1	STRG.746.1,blat.proc3829871.chain_766	2
scaffold_24	spliced_intron	8737754	8737865	-	asmbl_33085,asmbl_33087,asmbl_33090,asmbl_33091	none	STRG.26873.1,STRG.26873.2,blat.proc3829901.chain_169,blat.proc3829901.chain_170,blat.proc3829901.chain_172	5	blat.proc3829901.chain_171	1
scaffold_18	spliced_intron	1944645	1944740	-	asmbl_19713	none	STRG.21071.1,blat.proc3829897.chain_1963	2	STRG.21071.2,blat.proc3829897.chain_1962	2
scaffold_21	alt_acceptor	4593913	4593914	+	asmbl_28547	none	STRG.23996.2	1	STRG.23996.3,blat.proc3829883.chain_1115	2
scaffold_10	starts_in_intron	5690849	5690849	+	asmbl_4474	none	Trinity_GG_6878_c1_g1_i1,blat.proc3829877.chain_1038	2	STRG.12388.1,blat.proc3829877.chain_1039	2
scaffold_26	spliced_intron	5795098	5795276	-	asmbl_34902	none	STRG.28259.1	1	STRG.28259.2	1
scaffold_21	starts_in_intron	3727317	3727317	-	asmbl_27557,asmbl_27559	none	STRG.23948.3,blat.proc3829899.chain_1020	2	STRG.23948.1,STRG.23948.2,blat.proc3829899.chain_1021,blat.proc3829899.chain_1022	4
scaffold_5	retained_intron	1548524	1548586	-	asmbl_45249	none	Trinity_GG_20236_c0_g1_i4,blat.proc3829889.chain_1822	2	STRG.5706.1,blat.proc3829889.chain_1819,blat.proc3829889.chain_1821	3
scaffold_6	retained_exon	8172709	8172799	-	asmbl_48474	none	Trinity_GG_21366_c0_g1_i3,blat.proc3829889.chain_3717	2	STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3716,blat.proc3829889.chain_3724	4
scaffold_20	ends_in_intron	9817257	9817257	+	asmbl_26060	none	blat.proc3829883.chain_603	1	STRG.23513.1,Trinity_GG_12984_c0_g1_i2,blat.proc3829883.chain_602	3
scaffold_19	alt_donor	10637238	10637239	-	asmbl_21558	none	STRG.22400.1,blat.proc3829897.chain_3046	2	STRG.22400.2	1
scaffold_12	alt_donor	16729887	16729888	-	asmbl_8281	none	STRG.15400.1,Trinity_GG_25625_c0_g1_i1,blat.proc3829895.chain_94	3	STRG.15400.2,Trinity_GG_25625_c0_g1_i5,blat.proc3829895.chain_93	3
scaffold_16	retained_exon	10977144	10977218	-	asmbl_16502	none	STRG.19633.2	1	blat.proc3829897.chain_538	1
scaffold_4	alternate_exon	3379596	3379819	+	asmbl_42514,asmbl_42515	none	STRG.4269.1,STRG.4269.2,blat.proc3829873.chain_586,blat.proc3829873.chain_587	4	blat.proc3829873.chain_590	1
scaffold_2	alt_acceptor	19773023	19773024	+	asmbl_25321	none	STRG.2825.2	1	STRG.2825.1,blat.proc3829871.chain_2983,blat.proc3829871.chain_2984,blat.proc3829871.chain_2985	4
scaffold_24	alt_donor	3655857	3655858	+	asmbl_32161,asmbl_32163	none	STRG.26528.3,STRG.26528.6,Trinity_GG_14654_c0_g1_i10,Trinity_GG_14654_c0_g1_i7,blat.proc3829883.chain_3403,blat.proc3829883.chain_3407	6	STRG.26528.1,STRG.26528.2,STRG.26528.4,Trinity_GG_14654_c0_g1_i3,blat.proc3829883.chain_3402,blat.proc3829883.chain_3405,blat.proc3829883.chain_3406,blat.proc3829883.chain_3408	8
scaffold_9	alt_acceptor	7796516	7796517	+	asmbl_54121,asmbl_54128	none	blat.proc3829875.chain_3710,blat.proc3829875.chain_3713,blat.proc3829875.chain_3716	3	blat.proc3829875.chain_3709	1
scaffold_5	retained_intron	15462675	15462768	-	asmbl_46059	none	blat.proc3829889.chain_2791	1	STRG.6726.1,STRG.6726.2,blat.proc3829889.chain_2790	3
scaffold_17	alt_acceptor	11568006	11568007	+	asmbl_18360,asmbl_18361	none	STRG.20693.1,STRG.20693.4	2	STRG.20693.2,STRG.20693.3	2
scaffold_21	spliced_intron	8004779	8005332	+	asmbl_28791	none	STRG.24326.1,blat.proc3829883.chain_1461	2	STRG.24326.2,Trinity_GG_13472_c0_g1_i7,blat.proc3829883.chain_1460,blat.proc3829883.chain_1464	4
scaffold_6	alt_donor	7517140	7517141	-	asmbl_48433,asmbl_48436	none	STRG.7647.4,blat.proc3829889.chain_3680	2	STRG.7647.1,STRG.7647.3,blat.proc3829889.chain_3683,blat.proc3829889.chain_3684	4
scaffold_23	retained_exon	4950067	4950205	+	asmbl_30838	none	Trinity_GG_14281_c0_g1_i2,blat.proc3829883.chain_2756	2	STRG.25865.1,Trinity_GG_14281_c0_g1_i3,blat.proc3829883.chain_2757	3
scaffold_6	retained_intron	7169018	7171242	+	asmbl_46986,asmbl_46991,asmbl_46992	none	STRG.7621.2,STRG.7621.4,Trinity_GG_4175_c0_g1_i3,blat.proc3829873.chain_3738	4	STRG.7621.1,STRG.7621.3,blat.proc3829873.chain_3739	3
scaffold_19	spliced_intron	12822074	12822167	-	asmbl_21756,asmbl_21757,asmbl_21758,asmbl_21760,asmbl_21764,asmbl_21765	none	STRG.22593.1,STRG.22593.2,STRG.22593.3,blat.proc3829897.chain_3275,blat.proc3829897.chain_3277,blat.proc3829897.chain_3278,blat.proc3829897.chain_3279,blat.proc3829897.chain_3280	8	blat.proc3829897.chain_3274	1
scaffold_21	spliced_intron	6191859	6192384	+	asmbl_28640,asmbl_28641	none	STRG.24137.1,blat.proc3829883.chain_1190,blat.proc3829883.chain_1192	3	Trinity_GG_13323_c0_g1_i3,blat.proc3829883.chain_1191	2
scaffold_5	ends_in_intron	8881815	8881815	+	asmbl_44243	none	blat.proc3829873.chain_2345	1	STRG.6222.1,Trinity_GG_3383_c0_g1_i1,blat.proc3829873.chain_2344	3
scaffold_1	alt_donor	22134590	22134591	+	asmbl_2671	none	STRG.1479.2,Trinity_GG_848_c1_g2_i1,blat.proc3829871.chain_1517	3	STRG.1479.3	1
scaffold_1	retained_intron	12683507	12683637	+	asmbl_2232	none	blat.proc3829871.chain_958	1	STRG.890.1,blat.proc3829871.chain_955,blat.proc3829871.chain_956,blat.proc3829871.chain_957	4
scaffold_8	retained_intron	1801775	1801810	-	asmbl_52700	none	blat.proc3829875.chain_2240	1	STRG.9770.1	1
scaffold_13	alt_acceptor	16460089	16460090	-	asmbl_10276	none	STRG.16689.3,blat.proc3829895.chain_1357	2	STRG.16689.1,STRG.16689.4,STRG.16689.5,Trinity_GG_26334_c0_g1_i2,Trinity_GG_26334_c0_g1_i3,Trinity_GG_26334_c0_g1_i4,blat.proc3829895.chain_1353,blat.proc3829895.chain_1354,blat.proc3829895.chain_1355	9
scaffold_14	starts_in_intron	1101369	1101369	+	asmbl_11780	none	Trinity_GG_9222_c0_g1_i4,blat.proc3829879.chain_1483	2	STRG.16756.1,STRG.16756.2,STRG.16756.3,Trinity_GG_9222_c0_g1_i2,blat.proc3829879.chain_1478,blat.proc3829879.chain_1479,blat.proc3829879.chain_1481,blat.proc3829879.chain_1482	8
scaffold_28	starts_in_intron	5330522	5330522	+	asmbl_38278	none	Trinity_GG_16445_c0_g1_i2,blat.proc3829885.chain_2774	2	STRG.29660.1,Trinity_GG_16445_c0_g1_i1,blat.proc3829885.chain_2775	3
scaffold_23	spliced_intron	7686045	7686483	+	asmbl_31007,asmbl_31011,asmbl_31013,asmbl_31014	none	STRG.26063.3,STRG.26063.5,STRG.26063.7,Trinity_GG_14406_c0_g1_i1,Trinity_GG_14406_c0_g1_i4,blat.proc3829883.chain_2978,blat.proc3829883.chain_2979	7	Trinity_GG_14406_c0_g1_i5,blat.proc3829883.chain_2976	2
scaffold_26	starts_in_intron	10094978	10094978	-	asmbl_35081	none	blat.proc3829901.chain_1640	1	STRG.28512.1,STRG.28512.2,Trinity_GG_32937_c0_g1_i3,blat.proc3829901.chain_1637,blat.proc3829901.chain_1638,blat.proc3829901.chain_1639	6
scaffold_14	spliced_intron	15470363	15470821	+	asmbl_12589	none	STRG.17772.1	1	STRG.17772.2,Trinity_GG_9774_c0_g1_i7,blat.proc3829879.chain_2451,blat.proc3829879.chain_2454	4
scaffold_8	spliced_intron	14134530	14135737	-	asmbl_53302	none	STRG.10512.1	1	STRG.10512.2,Trinity_GG_22853_c0_g1_i1,blat.proc3829891.chain_2653,blat.proc3829891.chain_2654	4
scaffold_5	alt_acceptor	10539191	10539192	-	asmbl_45746,asmbl_45747,asmbl_45750	none	STRG.6329.1,Trinity_GG_20579_c0_g1_i4,Trinity_GG_20579_c0_g1_i7,blat.proc3829889.chain_2425,blat.proc3829889.chain_2427	5	STRG.6329.3,STRG.6329.4,blat.proc3829889.chain_2428	3
scaffold_23	retained_intron	811002	811092	-	asmbl_31327	none	Trinity_GG_31307_c0_g1_i9,blat.proc3829899.chain_2675	2	STRG.25556.3,Trinity_GG_31307_c0_g1_i7,blat.proc3829899.chain_2667	3
scaffold_11	alt_acceptor	2855085	2855086	+	asmbl_5347	none	STRG.13407.1,Trinity_GG_7321_c0_g1_i3,blat.proc3829877.chain_1816	3	STRG.13407.2	1
scaffold_20	alt_donor	11695429	11695430	-	asmbl_27113	none	STRG.23665.1,blat.proc3829899.chain_667	2	blat.proc3829899.chain_665	1
scaffold_24	alt_acceptor	420761	420762	+	asmbl_32017	none	STRG.26311.1,blat.proc3829883.chain_3233	2	STRG.26311.2	1
scaffold_3	alt_acceptor	16442312	16442313	+	asmbl_40582,asmbl_40584	none	STRG.3919.1,blat.proc3829873.chain_305,blat.proc3829873.chain_306	3	STRG.3919.2,STRG.3919.3	2
scaffold_5	alt_acceptor	15766161	15766162	+	asmbl_44681	none	blat.proc3829873.chain_2875	1	Trinity_GG_3692_c0_g1_i6,blat.proc3829873.chain_2879	2
scaffold_2	retained_intron	15894798	15894963	+	asmbl_25106	none	STRG.2531.1,Trinity_GG_1411_c0_g1_i1,blat.proc3829871.chain_2670	3	STRG.2531.2	1
scaffold_2	starts_in_intron	20425006	20425006	+	asmbl_25362	none	Trinity_GG_1622_c0_g1_i2,blat.proc3829871.chain_3038	2	STRG.2880.1,STRG.2880.2,blat.proc3829871.chain_3037	3
scaffold_5	retained_intron	19029108	19029499	-	asmbl_46263	none	STRG.7018.2,blat.proc3829889.chain_3005	2	STRG.7018.1,blat.proc3829889.chain_3008	2
scaffold_8	retained_intron	6307610	6307748	+	asmbl_51947	none	blat.proc3829875.chain_2462	1	STRG.10028.1,blat.proc3829875.chain_2461	2
scaffold_15	alternate_exon	8440534	8440572	+	asmbl_14276	none	STRG.18388.1,blat.proc3829879.chain_2966	2	STRG.18388.2	1
scaffold_9	skipped_exon	7748473	7750937	+	asmbl_54120	none	blat.proc3829875.chain_3736	1	STRG.11212.1,Trinity_GG_6263_c1_g1_i3,blat.proc3829875.chain_3733,blat.proc3829875.chain_3734,blat.proc3829875.chain_3735	5
scaffold_21	starts_in_intron	7937088	7937088	-	asmbl_27888	none	blat.proc3829899.chain_1371	1	STRG.24314.1,blat.proc3829899.chain_1370,blat.proc3829899.chain_1372,blat.proc3829899.chain_1374	4
scaffold_15	starts_in_intron	5320769	5320769	-	asmbl_15204	none	STRG.18211.1,blat.proc3829895.chain_2927	2	STRG.18211.2,Trinity_GG_27242_c0_g1_i2,blat.proc3829895.chain_2925,blat.proc3829895.chain_2926,blat.proc3829895.chain_2929	5
scaffold_9	alt_acceptor	656089	656090	+	asmbl_53769	none	STRG.10789.1,blat.proc3829875.chain_3263	2	STRG.10789.2,blat.proc3829875.chain_3262	2
scaffold_8	alt_donor	17764233	17764234	+	asmbl_52491	none	STRG.10683.2	1	STRG.10683.1,Trinity_GG_5903_c0_g1_i2,blat.proc3829875.chain_3115	3
scaffold_6	retained_intron	17799090	17799282	-	asmbl_49136	none	blat.proc3829891.chain_713	1	STRG.8455.2,blat.proc3829891.chain_711	2
scaffold_22	alternate_exon	6216830	6216896	-	asmbl_30091	none	STRG.24965.3	1	STRG.24965.1,STRG.24965.2,STRG.24965.4	3
scaffold_9	spliced_intron	9596820	9596951	-	asmbl_55176	none	STRG.11315.3	1	STRG.11315.1,STRG.11315.2,Trinity_GG_23261_c0_g1_i1,Trinity_GG_23261_c0_g1_i3,blat.proc3829891.chain_3425,blat.proc3829891.chain_3426	6
scaffold_10	alt_acceptor	11971544	11971545	+	asmbl_4783	none	STRG.12831.3	1	STRG.12831.1,blat.proc3829877.chain_1321	2
scaffold_28	alt_donor	9450689	9450690	+	asmbl_38480	none	STRG.29957.2	1	STRG.29957.1,blat.proc3829885.chain_2956	2
scaffold_21	spliced_intron	7327012	7327159	-	asmbl_27819	none	STRG.24243.1,blat.proc3829899.chain_1322	2	blat.proc3829899.chain_1325	1
scaffold_8	alt_donor	4194690	4194691	-	asmbl_52750	none	blat.proc3829891.chain_2037	1	STRG.9887.2	1
scaffold_15	ends_in_intron	13997488	13997488	-	asmbl_15715	none	Trinity_GG_27588_c0_g1_i3,blat.proc3829895.chain_3581	2	STRG.18823.1	1
scaffold_26	skipped_exon	5983273	5983512	+	asmbl_35587,asmbl_35588	none	STRG.28298.1,Trinity_GG_15650_c0_g1_i4,blat.proc3829885.chain_1321,blat.proc3829885.chain_1325	4	blat.proc3829885.chain_1323,blat.proc3829885.chain_1324	2
scaffold_10	retained_exon	1491217	1491397	-	asmbl_2978,asmbl_2980	none	STRG.12017.2,blat.proc3829893.chain_390,blat.proc3829893.chain_392	3	STRG.12017.1,STRG.12017.3,blat.proc3829893.chain_389,blat.proc3829893.chain_394	4
scaffold_16	spliced_intron	9145719	9145955	+	asmbl_17258,asmbl_17261,asmbl_17264	none	STRG.19502.1,blat.proc3829881.chain_393,blat.proc3829881.chain_396,blat.proc3829881.chain_397	4	STRG.19502.3,blat.proc3829881.chain_392	2
scaffold_21	skipped_exon	606869	609625	+	asmbl_28303	none	STRG.23736.1,blat.proc3829883.chain_908	2	STRG.23736.2,blat.proc3829883.chain_909	2
scaffold_5	spliced_intron	8748797	8748963	+	asmbl_44226,asmbl_44228,asmbl_44229	none	STRG.6200.1,STRG.6200.2,Trinity_GG_3381_c0_g1_i5,blat.proc3829873.chain_2338,blat.proc3829873.chain_2339,blat.proc3829873.chain_2340	6	Trinity_GG_3381_c0_g1_i3,blat.proc3829873.chain_2341,blat.proc3829873.chain_2342	3
scaffold_24	alt_acceptor	7163777	7163778	+	asmbl_32378	none	STRG.26743.2	1	STRG.26743.1,blat.proc3829883.chain_3645	2
scaffold_20	retained_intron	2765358	2765473	-	asmbl_26595	none	Trinity_GG_29850_c1_g1_i1,blat.proc3829899.chain_29	2	STRG.23004.5	1
scaffold_9	retained_exon	14315898	14315991	-	asmbl_55441	none	STRG.11669.1	1	STRG.11669.2	1
scaffold_5	retained_intron	15560627	15561046	-	asmbl_46084,asmbl_46086	none	STRG.6744.1,blat.proc3829889.chain_2820,blat.proc3829889.chain_2821	3	blat.proc3829889.chain_2818	1
scaffold_15	ends_in_intron	12133844	12133844	-	asmbl_15580	none	Trinity_GG_27471_c0_g1_i3,blat.proc3829895.chain_3380	2	STRG.18680.1,blat.proc3829895.chain_3377	2
scaffold_1	alt_acceptor	4590127	4590128	-	asmbl_216	none	STRG.281.1,Trinity_GG_17136_c0_g1_i1,blat.proc3829887.chain_102	3	STRG.281.2,STRG.281.3	2
scaffold_19	retained_exon	10222384	10222450	+	asmbl_22435,asmbl_22436	none	STRG.22389.2,STRG.22389.3	2	STRG.22389.1,blat.proc3829881.chain_3317	2
scaffold_18	ends_in_intron	5729842	5729842	+	asmbl_20632	none	blat.proc3829881.chain_2236	1	STRG.21313.1,STRG.21313.2,Trinity_GG_11744_c0_g1_i1,Trinity_GG_11744_c0_g1_i3,blat.proc3829881.chain_2235,blat.proc3829881.chain_2237	6
scaffold_6	alt_donor	5937933	5937934	-	asmbl_48378	none	STRG.7540.1	1	STRG.7540.2	1
scaffold_24	spliced_intron	10778989	10779251	-	asmbl_33210,asmbl_33211,asmbl_33214	none	STRG.27021.1,blat.proc3829901.chain_292,blat.proc3829901.chain_294,blat.proc3829901.chain_296	4	blat.proc3829901.chain_293	1
scaffold_10	skipped_exon	6598282	6598969	-	asmbl_3394	none	STRG.12472.2	1	STRG.12472.1,blat.proc3829893.chain_937,blat.proc3829893.chain_938	3
scaffold_23	ends_in_intron	809222	809222	-	asmbl_31325	none	STRG.25556.3,Trinity_GG_31307_c0_g1_i5,blat.proc3829899.chain_2671	3	STRG.25556.2	1
scaffold_2	spliced_intron	14021377	14021829	+	asmbl_24902,asmbl_24904	none	STRG.2396.1,Trinity_GG_1338_c0_g1_i2,blat.proc3829871.chain_2493,blat.proc3829871.chain_2494	4	Trinity_GG_1338_c0_g1_i4,blat.proc3829871.chain_2491,blat.proc3829871.chain_2492	3
scaffold_4	ends_in_intron	19549406	19549406	-	asmbl_42204	none	Trinity_GG_20129_c0_g1_i2	1	STRG.5536.1,blat.proc3829889.chain_1633	2
scaffold_16	alt_donor	4603722	4603723	+	asmbl_16981,asmbl_16983	none	STRG.19235.1,blat.proc3829881.chain_67,blat.proc3829881.chain_68	3	STRG.19235.2	1
scaffold_4	starts_in_intron	5244389	5244389	-	asmbl_41321	none	blat.proc3829889.chain_490	1	STRG.4418.1,blat.proc3829889.chain_489	2
scaffold_4	spliced_intron	5228399	5231130	-	asmbl_41309,asmbl_41312	none	STRG.4417.1,STRG.4417.3,blat.proc3829889.chain_436,blat.proc3829889.chain_439	4	Trinity_GG_19430_c0_g1_i1,blat.proc3829889.chain_440	2
scaffold_11	alt_donor	4716008	4716009	+	asmbl_5466	none	STRG.13545.3	1	STRG.13545.1,STRG.13545.2,blat.proc3829877.chain_2043	3
scaffold_9	skipped_exon	9691365	9692259	-	asmbl_55205	none	STRG.11334.3	1	STRG.11334.1,STRG.11334.2,blat.proc3829891.chain_3512,blat.proc3829891.chain_3513,blat.proc3829891.chain_3514,blat.proc3829891.chain_3515	6
scaffold_11	ends_in_intron	9018059	9018059	-	asmbl_6889,asmbl_6890	none	blat.proc3829893.chain_2276,blat.proc3829893.chain_2277	2	STRG.13926.1,blat.proc3829893.chain_2278	2
scaffold_26	alternate_exon	9514230	9514351	+	asmbl_35761	none	STRG.28482.2	1	STRG.28482.1,blat.proc3829885.chain_1511	2
scaffold_6	alt_acceptor	4152244	4152245	-	asmbl_48234	none	STRG.7383.2,blat.proc3829889.chain_3417	2	STRG.7383.1	1
scaffold_11	retained_intron	17086528	17087549	-	asmbl_7230	none	STRG.14362.6	1	STRG.14362.1,STRG.14362.4,STRG.14362.5,blat.proc3829893.chain_2767	4
scaffold_18	skipped_exon	8862547	8864199	-	asmbl_20064	none	Trinity_GG_29045_c0_g1_i17,blat.proc3829897.chain_2361	2	STRG.21541.2,blat.proc3829897.chain_2356,blat.proc3829897.chain_2358	3
scaffold_6	retained_intron	300061	300175	+	asmbl_46599	none	STRG.7082.3	1	STRG.7082.1,STRG.7082.2,STRG.7082.4	3
scaffold_17	ends_in_intron	7048898	7048898	+	asmbl_18021	none	Trinity_GG_11134_c0_g1_i1	1	STRG.20358.2,blat.proc3829881.chain_1120	2
scaffold_6	retained_intron	18077604	18078336	+	asmbl_47752	none	STRG.8483.1,Trinity_GG_4675_c0_g1_i1,Trinity_GG_4675_c1_g1_i2,blat.proc3829875.chain_902,blat.proc3829875.chain_906	5	STRG.8483.2	1
scaffold_10	retained_intron	5390028	5390517	+	asmbl_4445	none	Trinity_GG_6848_c0_g1_i3,blat.proc3829877.chain_993	2	STRG.12356.2,blat.proc3829877.chain_994	2
scaffold_24	retained_intron	8750513	8750667	-	asmbl_33093,asmbl_33096,asmbl_33097	none	STRG.26871.1,blat.proc3829901.chain_158,blat.proc3829901.chain_159,blat.proc3829901.chain_161	4	STRG.26871.2,blat.proc3829901.chain_160	2
scaffold_4	retained_intron	16912391	16912492	+	asmbl_43350	none	STRG.5280.3	1	STRG.5280.2	1
scaffold_12	spliced_intron	9687346	9687437	-	asmbl_7820,asmbl_7822,asmbl_7823	none	STRG.14929.1,STRG.14929.3,STRG.14929.5,blat.proc3829893.chain_3332	4	Trinity_GG_25344_c0_g1_i2,blat.proc3829893.chain_3333	2
scaffold_2	alt_acceptor	13995432	13995433	+	asmbl_24895	none	STRG.2394.2	1	STRG.2394.1,STRG.2394.3	2
scaffold_8	starts_in_intron	6322054	6322054	-	asmbl_52870	none	blat.proc3829891.chain_2198	1	STRG.10031.1	1
scaffold_13	spliced_intron	8166668	8166859	-	asmbl_9903	none	STRG.16095.1	1	blat.proc3829895.chain_765	1
scaffold_2	retained_exon	10136911	10137082	+	asmbl_24734,asmbl_24736	none	STRG.2203.1,STRG.2203.3,blat.proc3829871.chain_2326,blat.proc3829871.chain_2327	4	STRG.2203.2,blat.proc3829871.chain_2325	2
scaffold_8	ends_in_intron	11953504	11953504	+	asmbl_52288	none	Trinity_GG_5776_c0_g1_i4	1	STRG.10389.1,blat.proc3829875.chain_2888	2
scaffold_25	spliced_intron	9336651	9337098	+	asmbl_33797,asmbl_33798,asmbl_33799	none	STRG.27743.1,blat.proc3829885.chain_772,blat.proc3829885.chain_773,blat.proc3829885.chain_775	4	blat.proc3829885.chain_770,blat.proc3829885.chain_774	2
scaffold_13	spliced_intron	8163692	8164029	-	asmbl_9901,asmbl_9903	none	STRG.16095.1,blat.proc3829895.chain_765	2	blat.proc3829895.chain_766	1
scaffold_6	ends_in_intron	5017985	5017985	-	asmbl_48326	none	Trinity_GG_21211_c0_g1_i1,Trinity_GG_21211_c0_g1_i2,blat.proc3829889.chain_3485,blat.proc3829889.chain_3486	4	STRG.7474.2	1
scaffold_7	ends_in_intron	12450847	12450847	-	asmbl_50045,asmbl_50050	none	Trinity_GG_22282_c1_g1_i3,Trinity_GG_22282_c1_g1_i9,blat.proc3829891.chain_1613,blat.proc3829891.chain_1614	4	STRG.9342.1,STRG.9342.2,STRG.9342.3,STRG.9342.4,Trinity_GG_22282_c1_g1_i12,Trinity_GG_22282_c1_g1_i7,blat.proc3829891.chain_1604,blat.proc3829891.chain_1605,blat.proc3829891.chain_1606,blat.proc3829891.chain_1607,blat.proc3829891.chain_1608,blat.proc3829891.chain_1610,blat.proc3829891.chain_1611	13
scaffold_8	starts_in_intron	8538348	8538348	-	asmbl_52948	none	blat.proc3829891.chain_2281	1	STRG.10101.1,blat.proc3829891.chain_2280	2
scaffold_19	starts_in_intron	1106399	1106399	-	asmbl_21230	none	STRG.21887.3	1	STRG.21887.1,STRG.21887.4,Trinity_GG_29212_c0_g2_i1,blat.proc3829897.chain_2647	4
scaffold_23	retained_exon	4100534	4100716	-	asmbl_31553	none	STRG.25802.2	1	STRG.25802.1,STRG.25802.4	2
scaffold_2	retained_intron	8062385	8062907	+	asmbl_24645	none	Trinity_GG_1147_c1_g1_i1,blat.proc3829871.chain_2096	2	STRG.2103.1,blat.proc3829871.chain_2094	2
scaffold_1	starts_in_intron	1216792	1216792	-	asmbl_48,asmbl_51	none	STRG.64.2,blat.proc3829885.chain_3728	2	STRG.64.1,STRG.64.3,Trinity_GG_17052_c0_g1_i1,blat.proc3829885.chain_3726,blat.proc3829885.chain_3727	5
scaffold_19	starts_in_intron	11482563	11482563	-	asmbl_21613	none	STRG.22477.2	1	STRG.22477.1,STRG.22477.3,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184,blat.proc3829897.chain_3187,blat.proc3829897.chain_3192	6
scaffold_6	skipped_exon	878149	878728	+	asmbl_46638	none	STRG.7151.2	1	STRG.7151.3	1
scaffold_9	alt_donor	17743878	17743879	+	asmbl_54615	none	STRG.11853.3,blat.proc3829877.chain_525	2	STRG.11853.1,STRG.11853.2,blat.proc3829877.chain_521,blat.proc3829877.chain_522,blat.proc3829877.chain_523,blat.proc3829877.chain_526,blat.proc3829877.chain_527	7
scaffold_15	retained_intron	2565306	2565577	-	asmbl_15031,asmbl_15032,asmbl_15033	none	STRG.18037.1,STRG.18037.3,STRG.18037.4,blat.proc3829895.chain_2774	4	STRG.18037.2,STRG.18037.5,blat.proc3829895.chain_2773,blat.proc3829895.chain_2775	4
scaffold_17	alt_acceptor	5507352	5507353	-	asmbl_18982	none	STRG.20258.2	1	STRG.20258.1	1
scaffold_5	alt_acceptor	187062	187063	+	asmbl_43749,asmbl_43750,asmbl_43751	none	STRG.5581.1,STRG.5581.3,STRG.5581.4	3	STRG.5581.2	1
scaffold_12	spliced_intron	1383649	1383801	+	asmbl_8435	none	STRG.14455.1,blat.proc3829877.chain_2934	2	blat.proc3829877.chain_2933	1
scaffold_4	retained_intron	16137284	16137576	-	asmbl_41890,asmbl_41893	none	STRG.5182.2,STRG.5182.3,blat.proc3829889.chain_1220	3	STRG.5182.4,blat.proc3829889.chain_1223	2
scaffold_21	alt_acceptor	7503974	7503975	-	asmbl_27852,asmbl_27853	none	STRG.24269.2,STRG.24269.3	2	STRG.24269.1,blat.proc3829899.chain_1354,blat.proc3829899.chain_1355,blat.proc3829899.chain_1357	4
scaffold_23	spliced_intron	2587697	2587898	-	asmbl_31462	none	STRG.25705.5	1	STRG.25705.1,blat.proc3829899.chain_2747,blat.proc3829899.chain_2748	3
scaffold_21	alt_acceptor	7601223	7601224	+	asmbl_28768	none	STRG.24282.2,blat.proc3829883.chain_1429	2	STRG.24282.1,blat.proc3829883.chain_1430	2
scaffold_27	spliced_intron	2883096	2883240	-	asmbl_36819,asmbl_36820	none	STRG.28754.2,STRG.28754.3,blat.proc3829901.chain_1867	3	STRG.28754.1,blat.proc3829901.chain_1866	2
scaffold_21	starts_in_intron	5175615	5175615	-	asmbl_27651	none	blat.proc3829899.chain_1134	1	STRG.24038.1,blat.proc3829899.chain_1128,blat.proc3829899.chain_1129	3
scaffold_16	skipped_exon	15218961	15220712	+	asmbl_17524	none	STRG.19866.1	1	STRG.19866.2,blat.proc3829881.chain_657	2
scaffold_12	starts_in_intron	10233073	10233073	-	asmbl_7870	none	blat.proc3829893.chain_3377	1	STRG.14982.1,blat.proc3829893.chain_3376	2
scaffold_8	spliced_intron	9122376	9122775	-	asmbl_52998,asmbl_53000	none	STRG.10160.2,STRG.10160.3,blat.proc3829891.chain_2327,blat.proc3829891.chain_2328,blat.proc3829891.chain_2330	5	STRG.10160.4,Trinity_GG_22689_c0_g1_i1,blat.proc3829891.chain_2329	3
scaffold_13	alt_donor	388177	388178	-	asmbl_9297	none	STRG.15422.1,blat.proc3829895.chain_130	2	STRG.15422.2,blat.proc3829895.chain_132	2
scaffold_18	spliced_intron	9170256	9170424	+	asmbl_20903	none	STRG.21549.1,Trinity_GG_11916_c0_g1_i3,blat.proc3829881.chain_2539	3	Trinity_GG_11916_c0_g1_i1,blat.proc3829881.chain_2538	2
scaffold_25	retained_exon	7343542	7343655	+	asmbl_33667	none	STRG.27572.1,blat.proc3829885.chain_549	2	STRG.27572.2	1
scaffold_8	starts_in_intron	17281215	17281215	-	asmbl_53449	none	Trinity_GG_22912_c1_g1_i1,blat.proc3829891.chain_2766	2	STRG.10643.1,blat.proc3829891.chain_2763,blat.proc3829891.chain_2764,blat.proc3829891.chain_2765	4
scaffold_12	ends_in_intron	15418644	15418644	-	asmbl_8215	none	blat.proc3829895.chain_24	1	blat.proc3829895.chain_23	1
scaffold_7	ends_in_intron	8772202	8772202	+	asmbl_50937	none	blat.proc3829875.chain_1549	1	STRG.9107.1,STRG.9107.2,STRG.9107.3,blat.proc3829875.chain_1550,blat.proc3829875.chain_1551	5
scaffold_8	alternate_exon	17813120	17818717	+	asmbl_52503	none	STRG.10687.4	1	STRG.10687.3,Trinity_GG_5905_c0_g1_i1,blat.proc3829875.chain_3122	3
scaffold_27	alt_donor	5671461	5671462	-	asmbl_36971	none	blat.proc3829901.chain_2130	1	STRG.28954.1,blat.proc3829901.chain_2131	2
scaffold_5	alt_donor	15043288	15043289	-	asmbl_46015,asmbl_46019,asmbl_46021	none	STRG.6692.2,STRG.6692.4,STRG.6692.5,blat.proc3829889.chain_2741,blat.proc3829889.chain_2742	5	STRG.6692.3,STRG.6692.7,blat.proc3829889.chain_2738,blat.proc3829889.chain_2739	4
scaffold_17	alt_acceptor	12197968	12197969	+	asmbl_18399,asmbl_18403	none	STRG.20743.1,STRG.20743.2,blat.proc3829881.chain_1575	3	STRG.20743.3,STRG.20743.4,STRG.20743.5,blat.proc3829881.chain_1574,blat.proc3829881.chain_1576	5
scaffold_25	ends_in_intron	411809	411809	-	asmbl_33975	none	Trinity_GG_32132_c1_g1_i2,blat.proc3829901.chain_328	2	STRG.27064.1	1
scaffold_9	alternate_exon	9615591	9616632	-	asmbl_55185	none	STRG.11319.2	1	STRG.11319.1,blat.proc3829891.chain_3437	2
scaffold_12	alt_acceptor	11383583	11383584	-	asmbl_7946	none	STRG.15059.2	1	STRG.15059.1	1
scaffold_13	alternate_exon	16048915	16048928	+	asmbl_11526	none	blat.proc3829879.chain_1379	1	STRG.16628.2	1
scaffold_21	retained_intron	2516716	2516804	+	asmbl_28421	none	Trinity_GG_13216_c0_g1_i3,blat.proc3829883.chain_1000	2	STRG.23866.1,STRG.23866.2,blat.proc3829883.chain_1002	3
scaffold_13	ends_in_intron	8804969	8804969	-	asmbl_9939	none	Trinity_GG_26094_c0_g1_i4,blat.proc3829895.chain_939	2	STRG.16137.4,blat.proc3829895.chain_940,blat.proc3829895.chain_941,blat.proc3829895.chain_943,blat.proc3829895.chain_944	5
scaffold_16	starts_in_intron	5949778	5949778	+	asmbl_17037	none	Trinity_GG_10550_c0_g1_i3,blat.proc3829881.chain_118	2	STRG.19316.1,STRG.19316.2,Trinity_GG_10550_c0_g1_i2,blat.proc3829881.chain_116,blat.proc3829881.chain_117	5
scaffold_14	alternate_exon	8007596	8007987	+	asmbl_12166	none	STRG.17203.2,blat.proc3829879.chain_1947	2	STRG.17203.1,blat.proc3829879.chain_1949,blat.proc3829879.chain_1952	3
scaffold_7	retained_intron	6205363	6205464	+	asmbl_50737	none	STRG.8909.1,Trinity_GG_4916_c1_g1_i1,blat.proc3829875.chain_1347	3	STRG.8909.2	1
scaffold_17	alt_donor	8567878	8567879	-	asmbl_19147	none	STRG.20459.1,blat.proc3829897.chain_1431	2	blat.proc3829897.chain_1432	1
scaffold_8	retained_intron	4860713	4860934	-	asmbl_52805	none	blat.proc3829891.chain_2116	1	STRG.9940.1,blat.proc3829891.chain_2117,blat.proc3829891.chain_2118	3
scaffold_3	starts_in_intron	2967520	2967520	-	asmbl_38705	none	blat.proc3829887.chain_2832	1	STRG.3049.1,STRG.3049.2,blat.proc3829887.chain_2833	3
scaffold_1	alt_acceptor	12792318	12792319	-	asmbl_772	none	STRG.898.3	1	STRG.898.1,blat.proc3829887.chain_768,blat.proc3829887.chain_769	3
scaffold_2	starts_in_intron	950263	950263	+	asmbl_24186	none	STRG.1574.4	1	STRG.1574.1,STRG.1574.2,STRG.1574.3,blat.proc3829871.chain_1651	4
scaffold_10	alt_donor	11970189	11970190	+	asmbl_4783	none	STRG.12831.3	1	STRG.12831.1,blat.proc3829877.chain_1313,blat.proc3829877.chain_1317,blat.proc3829877.chain_1319,blat.proc3829877.chain_1321,blat.proc3829877.chain_1322	6
scaffold_12	alt_donor	12451859	12451860	+	asmbl_8969	none	STRG.15137.2,blat.proc3829877.chain_3559,blat.proc3829877.chain_3560	3	STRG.15137.1,STRG.15137.4	2
scaffold_20	starts_in_intron	7877726	7877726	+	asmbl_25886	none	STRG.23323.2,blat.proc3829883.chain_410	2	STRG.23323.1,blat.proc3829883.chain_409	2
scaffold_18	skipped_exon	10128612	10130396	+	asmbl_20927,asmbl_20928	none	STRG.21596.1,blat.proc3829881.chain_2566	2	STRG.21596.2,blat.proc3829881.chain_2567	2
scaffold_2	alt_acceptor	960791	960792	-	asmbl_22855	none	STRG.1579.1,Trinity_GG_17864_c0_g1_i1,blat.proc3829887.chain_1413	3	STRG.1579.2	1
scaffold_1	retained_intron	13030601	13030736	+	asmbl_2279	none	Trinity_GG_573_c0_g1_i2,blat.proc3829871.chain_1013	2	STRG.934.1	1
scaffold_15	starts_in_intron	9882488	9882488	+	asmbl_14378	none	blat.proc3829879.chain_3118	1	STRG.18494.1,STRG.18494.2,blat.proc3829879.chain_3119	3
scaffold_7	alternate_exon	1234374	1235346	+	asmbl_50479	none	blat.proc3829875.chain_1043	1	STRG.8627.3,STRG.8627.7,STRG.8627.9,Trinity_GG_4740_c0_g1_i16,blat.proc3829875.chain_1042	5
scaffold_2	retained_intron	15272780	15272879	+	asmbl_25038,asmbl_25042,asmbl_25044,asmbl_25045	none	blat.proc3829871.chain_2525,blat.proc3829871.chain_2527,blat.proc3829871.chain_2531,blat.proc3829871.chain_2537	4	STRG.2481.1,blat.proc3829871.chain_2524,blat.proc3829871.chain_2526,blat.proc3829871.chain_2528,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2535,blat.proc3829871.chain_2536,blat.proc3829871.chain_2538	9
scaffold_5	retained_intron	9853206	9853277	-	asmbl_45686	none	STRG.6296.2	1	STRG.6296.1	1
scaffold_5	alt_acceptor	3638608	3638609	+	asmbl_43899	none	STRG.5833.2,blat.proc3829873.chain_1971	2	STRG.5833.1,blat.proc3829873.chain_1970	2
scaffold_4	alternate_exon	16650275	16650316	+	asmbl_43330	none	STRG.5252.2	1	blat.proc3829873.chain_1485	1
scaffold_15	starts_in_intron	13944084	13944084	-	asmbl_15701	none	blat.proc3829895.chain_3543	1	STRG.18816.1,STRG.18816.4,blat.proc3829895.chain_3542,blat.proc3829895.chain_3544,blat.proc3829895.chain_3545,blat.proc3829895.chain_3546	6
scaffold_23	spliced_intron	10230166	10230202	+	asmbl_31137	none	STRG.26212.1	1	STRG.26212.2	1
scaffold_8	retained_intron	11853070	11855193	+	asmbl_52267,asmbl_52274,asmbl_52277,asmbl_52278,asmbl_52279,asmbl_52280,asmbl_52281,asmbl_52282,asmbl_52283,asmbl_52284	none	STRG.10382.2,STRG.10382.4,blat.proc3829875.chain_2967,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2976,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978	10	STRG.10382.3,blat.proc3829875.chain_2968,blat.proc3829875.chain_2975,blat.proc3829875.chain_2979	4
scaffold_1	starts_in_intron	16227566	16227566	+	asmbl_2450	none	Trinity_GG_677_c0_g1_i2,blat.proc3829871.chain_1218	2	STRG.1132.1,STRG.1132.2,blat.proc3829871.chain_1216,blat.proc3829871.chain_1217	4
scaffold_22	retained_intron	594271	594371	+	asmbl_29163	none	Trinity_GG_13614_c0_g1_i3,blat.proc3829883.chain_1677	2	STRG.24695.1,Trinity_GG_13614_c0_g1_i1,Trinity_GG_13614_c0_g1_i4,blat.proc3829883.chain_1676,blat.proc3829883.chain_1678	5
scaffold_20	alternate_exon	8256395	8256448	+	asmbl_25910	none	STRG.23355.2	1	STRG.23355.1,Trinity_GG_12878_c0_g1_i1,blat.proc3829883.chain_436	3
scaffold_22	spliced_intron	4225894	4226332	-	asmbl_29978,asmbl_29979,asmbl_29980,asmbl_29990	none	STRG.24838.2,STRG.24838.3,STRG.24838.4,blat.proc3829899.chain_1977	4	STRG.24838.1,blat.proc3829899.chain_1975,blat.proc3829899.chain_1976	3
scaffold_17	retained_intron	9942619	9942696	+	asmbl_18258,asmbl_18259	none	blat.proc3829881.chain_1386,blat.proc3829881.chain_1389	2	STRG.20600.1,Trinity_GG_11273_c0_g1_i1,blat.proc3829881.chain_1385,blat.proc3829881.chain_1387	4
scaffold_10	starts_in_intron	1627339	1627339	-	asmbl_2984	none	blat.proc3829893.chain_457	1	STRG.12019.1,STRG.12019.2,blat.proc3829893.chain_456,blat.proc3829893.chain_458	4
scaffold_6	retained_exon	12478001	12478109	+	asmbl_47333,asmbl_47334,asmbl_47337	none	STRG.7999.1,STRG.7999.2,STRG.7999.3,blat.proc3829875.chain_407	4	STRG.7999.4,blat.proc3829875.chain_408,blat.proc3829875.chain_409	3
scaffold_8	retained_intron	5433682	5433756	+	asmbl_51873	none	blat.proc3829875.chain_2416	1	STRG.9965.1,STRG.9965.2,blat.proc3829875.chain_2414,blat.proc3829875.chain_2415	4
scaffold_16	spliced_intron	8646214	8646704	+	asmbl_17234,asmbl_17238,asmbl_17239	none	STRG.19480.1,blat.proc3829881.chain_373,blat.proc3829881.chain_374,blat.proc3829881.chain_376	4	STRG.19480.2,Trinity_GG_10683_c0_g1_i7,blat.proc3829881.chain_375,blat.proc3829881.chain_377	4
scaffold_26	ends_in_intron	5040141	5040141	+	asmbl_35477,asmbl_35482	none	blat.proc3829885.chain_1165,blat.proc3829885.chain_1166	2	STRG.28206.1,blat.proc3829883.chain_2343,blat.proc3829883.chain_2345,blat.proc3829885.chain_1156,blat.proc3829885.chain_1157,blat.proc3829885.chain_1159,blat.proc3829885.chain_1162,blat.proc3829885.chain_1164,blat.proc3829885.chain_1168	9
scaffold_14	alt_acceptor	2541952	2541953	+	asmbl_11841	none	STRG.16858.2	1	STRG.16858.1,blat.proc3829879.chain_1598	2
scaffold_13	starts_in_intron	6622316	6622316	+	asmbl_10944,asmbl_10945	none	Trinity_GG_8717_c0_g1_i1,Trinity_GG_8717_c0_g1_i3,blat.proc3829879.chain_546,blat.proc3829879.chain_548	4	Trinity_GG_8717_c0_g1_i2,Trinity_GG_8717_c0_g1_i4,blat.proc3829879.chain_544,blat.proc3829879.chain_545	4
scaffold_13	starts_in_intron	9340711	9340711	+	asmbl_11183	none	Trinity_GG_8894_c0_g1_i1,blat.proc3829879.chain_921	2	STRG.16189.1	1
scaffold_8	retained_intron	13138179	13138853	-	asmbl_53272	none	blat.proc3829891.chain_2641	1	STRG.10481.1,STRG.10481.2,STRG.10481.3,blat.proc3829891.chain_2640,blat.proc3829891.chain_2642	5
scaffold_3	retained_exon	5927361	5928299	-	asmbl_38826,asmbl_38828,asmbl_38829	none	STRG.3248.1,blat.proc3829887.chain_2991,blat.proc3829887.chain_2992,blat.proc3829887.chain_2993	4	blat.proc3829887.chain_2990	1
scaffold_11	starts_in_intron	11794138	11794138	-	asmbl_7008	none	blat.proc3829893.chain_2493	1	STRG.14095.1,blat.proc3829893.chain_2494	2
scaffold_12	alt_acceptor	976469	976470	-	asmbl_7421,asmbl_7422,asmbl_7423	none	STRG.14425.1,STRG.14425.2,STRG.14425.3,blat.proc3829893.chain_2838,blat.proc3829893.chain_2839,blat.proc3829893.chain_2840	6	STRG.14425.4	1
scaffold_12	ends_in_intron	13390134	13390134	-	asmbl_8073,asmbl_8074,asmbl_8077,asmbl_8078,asmbl_8079	none	STRG.15208.2,STRG.15208.3,blat.proc3829893.chain_3544,blat.proc3829893.chain_3546,blat.proc3829893.chain_3547,blat.proc3829893.chain_3548	6	STRG.15208.1,blat.proc3829893.chain_3545	2
scaffold_28	starts_in_intron	5008628	5008628	+	asmbl_38255,asmbl_38256	none	blat.proc3829885.chain_2751,blat.proc3829885.chain_2752	2	STRG.29628.1,Trinity_GG_16433_c1_g1_i1,blat.proc3829885.chain_2758	3
scaffold_5	alt_acceptor	14680357	14680358	+	asmbl_44624	none	Trinity_GG_3607_c0_g1_i2,blat.proc3829873.chain_2738	2	STRG.6663.2,Trinity_GG_3607_c0_g1_i1,blat.proc3829873.chain_2740	3
scaffold_7	alt_donor	9816897	9816898	-	asmbl_49889	none	STRG.9169.2,blat.proc3829891.chain_1395	2	STRG.9169.1,blat.proc3829891.chain_1396	2
scaffold_14	alternate_exon	16055710	16055746	+	asmbl_12650	none	blat.proc3829879.chain_2477	1	STRG.17834.1,blat.proc3829879.chain_2478	2
scaffold_15	alt_donor	12742577	12742578	+	asmbl_14540,asmbl_14543,asmbl_14545	none	STRG.18731.1,STRG.18731.4,blat.proc3829879.chain_3350,blat.proc3829879.chain_3352	4	STRG.18731.2,STRG.18731.3,blat.proc3829879.chain_3353	3
scaffold_17	retained_intron	5341453	5341640	+	asmbl_17947	none	STRG.20245.1,Trinity_GG_11095_c1_g1_i1,blat.proc3829881.chain_1053	3	STRG.20245.3	1
scaffold_21	starts_in_intron	9925010	9925010	-	asmbl_28012	none	STRG.24446.3,blat.proc3829899.chain_1514	2	STRG.24446.1,STRG.24446.2,STRG.24446.4,STRG.24446.5,STRG.24446.6,blat.proc3829899.chain_1513,blat.proc3829899.chain_1515	7
scaffold_18	starts_in_intron	8914228	8914228	-	asmbl_20076,asmbl_20085	none	STRG.21550.3,STRG.21550.6	2	STRG.21550.2,STRG.21550.4,blat.proc3829897.chain_2394,blat.proc3829897.chain_2398	4
scaffold_1	retained_intron	8733924	8734054	-	asmbl_490	none	blat.proc3829887.chain_482	1	STRG.574.1,blat.proc3829887.chain_481,blat.proc3829887.chain_483,blat.proc3829887.chain_484	4
scaffold_16	ends_in_intron	8589913	8589913	+	asmbl_17210,asmbl_17215	none	blat.proc3829881.chain_355,blat.proc3829881.chain_357	2	STRG.19477.1,STRG.19477.3,STRG.19477.7,STRG.19477.8,blat.proc3829881.chain_353,blat.proc3829881.chain_354,blat.proc3829881.chain_359	7
scaffold_20	skipped_exon	10384363	10384687	+	asmbl_26108	none	Trinity_GG_12979_c0_g1_i5,blat.proc3829883.chain_592	2	STRG.23569.3,STRG.23569.5	2
scaffold_4	retained_intron	5228399	5230621	-	asmbl_41313,asmbl_41314	none	STRG.4417.2,Trinity_GG_19430_c0_g1_i1,blat.proc3829889.chain_440	3	STRG.4417.5,blat.proc3829889.chain_437	2
scaffold_11	retained_intron	13035297	13035575	-	asmbl_7092	none	STRG.14169.3,Trinity_GG_24917_c0_g2_i1,blat.proc3829893.chain_2578	3	STRG.14169.2,blat.proc3829893.chain_2576	2
scaffold_9	ends_in_intron	17852502	17852502	+	asmbl_54630,asmbl_54631	none	Trinity_GG_6607_c0_g1_i6,blat.proc3829877.chain_588,blat.proc3829877.chain_589	3	STRG.11860.3	1
scaffold_26	retained_intron	4590766	4590793	-	asmbl_34841	none	STRG.28165.2,Trinity_GG_32760_c0_g1_i2,Trinity_GG_32760_c0_g1_i3	3	STRG.28165.1	1
scaffold_22	alt_donor	7437749	7437750	-	asmbl_30163,asmbl_30164	none	STRG.25066.2,STRG.25066.5,blat.proc3829899.chain_2152,blat.proc3829899.chain_2154	4	STRG.25066.1,STRG.25066.3,STRG.25066.4,blat.proc3829899.chain_2153,blat.proc3829899.chain_2155	5
scaffold_21	retained_intron	5468667	5468783	-	asmbl_27682	none	blat.proc3829899.chain_1136	1	STRG.24064.1,STRG.24064.2,blat.proc3829899.chain_1135	3
scaffold_2	retained_intron	4687374	4687408	-	asmbl_23114	none	STRG.1889.2	1	STRG.1889.1,STRG.1889.3	2
scaffold_5	spliced_intron	12755181	12755356	-	asmbl_45864	none	STRG.6501.1,blat.proc3829889.chain_2559	2	STRG.6501.2,Trinity_GG_20654_c1_g1_i2,blat.proc3829889.chain_2560	3
scaffold_5	alt_acceptor	10298207	10298208	-	asmbl_45724,asmbl_45725	none	STRG.6324.2,STRG.6324.3	2	STRG.6324.1,blat.proc3829889.chain_2410,blat.proc3829889.chain_2412	3
scaffold_11	ends_in_intron	8567520	8567520	+	asmbl_5764	none	Trinity_GG_7617_c0_g1_i2,blat.proc3829877.chain_2308	2	STRG.13862.1,Trinity_GG_7617_c0_g1_i1,Trinity_GG_7617_c0_g1_i3,blat.proc3829877.chain_2306,blat.proc3829877.chain_2307	5
scaffold_4	ends_in_intron	6188551	6188551	-	asmbl_41404,asmbl_41405	none	STRG.4487.2,blat.proc3829889.chain_543	2	STRG.4487.1,Trinity_GG_19491_c0_g1_i1,blat.proc3829889.chain_541	3
scaffold_17	alt_acceptor	1365684	1365685	+	asmbl_17733	none	STRG.19962.1	1	STRG.19962.2	1
scaffold_4	spliced_intron	6304427	6304811	+	asmbl_42718,asmbl_42719,asmbl_42721,asmbl_42723,asmbl_42725,asmbl_42727	none	STRG.4502.1,STRG.4502.2,Trinity_GG_2497_c0_g1_i1,Trinity_GG_2497_c0_g1_i8,Trinity_GG_2497_c0_g1_i9,blat.proc3829873.chain_863,blat.proc3829873.chain_865,blat.proc3829873.chain_866,blat.proc3829873.chain_870,blat.proc3829873.chain_871	10	Trinity_GG_2497_c0_g1_i2,Trinity_GG_2497_c0_g1_i6,blat.proc3829873.chain_867,blat.proc3829873.chain_868	4
scaffold_10	starts_in_intron	982985	982985	-	asmbl_2944	none	Trinity_GG_23673_c0_g1_i2,blat.proc3829893.chain_424	2	STRG.11980.1,STRG.11980.2,STRG.11980.3,blat.proc3829893.chain_423	4
scaffold_27	skipped_exon	1774172	1774783	+	asmbl_35997	none	STRG.28648.2	1	STRG.28648.1,Trinity_GG_15863_c0_g1_i1,Trinity_GG_15863_c0_g1_i2	3
scaffold_18	alt_acceptor	647076	647077	+	asmbl_20339,asmbl_20340,asmbl_20341	none	STRG.20994.1,Trinity_GG_11517_c0_g1_i1,Trinity_GG_11517_c0_g1_i4,Trinity_GG_11517_c0_g1_i6,blat.proc3829881.chain_1786,blat.proc3829881.chain_1788,blat.proc3829881.chain_1789	7	STRG.20994.2	1
scaffold_20	alt_acceptor	11574013	11574014	-	asmbl_27085	none	STRG.23650.4	1	STRG.23650.1,STRG.23650.2,STRG.23650.3,blat.proc3829899.chain_596,blat.proc3829899.chain_597	5
scaffold_17	alt_acceptor	6684385	6684386	+	asmbl_17995	none	STRG.20309.3,blat.proc3829881.chain_1060	2	STRG.20309.1,blat.proc3829881.chain_1059	2
scaffold_9	retained_intron	2799140	2801078	+	asmbl_53842	none	STRG.10912.1,Trinity_GG_6054_c0_g1_i2,blat.proc3829875.chain_3365,blat.proc3829875.chain_3372	4	blat.proc3829875.chain_3367	1
scaffold_12	spliced_intron	15014286	15014615	-	asmbl_8166,asmbl_8167	none	STRG.15285.1,blat.proc3829893.chain_3727,blat.proc3829893.chain_3729	3	STRG.15285.2,blat.proc3829893.chain_3728,blat.proc3829893.chain_3730	3
scaffold_15	alt_acceptor	2491472	2491473	+	asmbl_14000	none	STRG.18021.2	1	STRG.18021.1	1
scaffold_12	spliced_intron	2965837	2965925	-	asmbl_7472	none	STRG.14517.1,blat.proc3829893.chain_2892	2	Trinity_GG_25099_c0_g1_i2,blat.proc3829893.chain_2891	2
scaffold_1	retained_intron	5207359	5207851	+	asmbl_1711,asmbl_1713	none	blat.proc3829871.chain_393,blat.proc3829871.chain_395	2	STRG.323.1,STRG.323.2,blat.proc3829871.chain_390,blat.proc3829871.chain_392,blat.proc3829871.chain_394	5
scaffold_14	spliced_intron	14545904	14546225	-	asmbl_13678	none	Trinity_GG_26969_c2_g1_i1,blat.proc3829895.chain_2450	2	STRG.17704.1,Trinity_GG_26969_c1_g1_i1,blat.proc3829895.chain_2449	3
scaffold_15	skipped_exon	12039034	12039793	+	asmbl_14463	none	STRG.18655.2	1	STRG.18655.1,blat.proc3829879.chain_3221,blat.proc3829879.chain_3223	3
scaffold_15	ends_in_intron	12397519	12397519	-	asmbl_15590	none	Trinity_GG_27509_c0_g2_i1,blat.proc3829895.chain_3449	2	STRG.18686.4,STRG.18686.5,blat.proc3829895.chain_3457	3
scaffold_2	alternate_exon	14343127	14344424	-	asmbl_23612	none	blat.proc3829887.chain_2307	1	blat.proc3829887.chain_2306	1
scaffold_27	skipped_exon	313987	314458	-	asmbl_36612	none	blat.proc3829901.chain_1671	1	STRG.28538.1,STRG.28538.2,STRG.28538.3	3
scaffold_15	alternate_exon	8589777	8590102	+	asmbl_14283	none	STRG.18395.2	1	STRG.18395.1,blat.proc3829879.chain_3004	2
scaffold_15	spliced_intron	8364853	8364968	-	asmbl_15358,asmbl_15360	none	STRG.18387.2,blat.proc3829895.chain_3158,blat.proc3829895.chain_3159	3	Trinity_GG_27360_c0_g1_i6,blat.proc3829895.chain_3160	2
scaffold_11	starts_in_intron	4638457	4638457	+	asmbl_5455	none	blat.proc3829877.chain_2038	1	STRG.13534.1,blat.proc3829877.chain_2039	2
scaffold_24	alt_acceptor	7934966	7934967	+	asmbl_32410	none	STRG.26832.2	1	STRG.26832.1,Trinity_GG_14835_c2_g1_i2,blat.proc3829883.chain_3722	3
scaffold_10	starts_in_intron	13283793	13283793	-	asmbl_3769	none	blat.proc3829893.chain_1440	1	STRG.12910.2,STRG.12910.4	2
scaffold_26	alternate_exon	9311532	9312441	+	asmbl_35746	none	STRG.28479.1	1	STRG.28479.3,blat.proc3829885.chain_1519	2
scaffold_23	starts_in_intron	7276132	7276132	-	asmbl_31741	none	blat.proc3829899.chain_3123	1	STRG.26034.1,STRG.26034.2,STRG.26034.3,STRG.26034.4,blat.proc3829899.chain_3127	5
scaffold_27	starts_in_intron	3997686	3997686	+	asmbl_36205	none	Trinity_GG_15970_c0_g1_i5,blat.proc3829885.chain_1937	2	STRG.28848.2,blat.proc3829885.chain_1938,blat.proc3829885.chain_1939,blat.proc3829885.chain_1940	4
scaffold_6	skipped_exon	17522092	17523322	+	asmbl_47702	none	STRG.8451.3	1	STRG.8451.1,STRG.8451.4,blat.proc3829875.chain_843	3
scaffold_13	spliced_intron	393652	393774	-	asmbl_9310,asmbl_9311,asmbl_9312,asmbl_9313,asmbl_9316,asmbl_9317,asmbl_9318	none	STRG.15428.1,STRG.15428.2,STRG.15428.3,Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i25,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_221,blat.proc3829895.chain_223,blat.proc3829895.chain_224,blat.proc3829895.chain_229	11	Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i27,Trinity_GG_25691_c0_g1_i8,blat.proc3829895.chain_226,blat.proc3829895.chain_227,blat.proc3829895.chain_230,blat.proc3829895.chain_233	8
scaffold_6	alt_acceptor	13357452	13357453	-	asmbl_48844	none	STRG.8087.2,blat.proc3829891.chain_338	2	STRG.8087.1,blat.proc3829891.chain_340,blat.proc3829891.chain_341	3
scaffold_24	spliced_intron	7173191	7173356	-	asmbl_33004,asmbl_33005,asmbl_33006	none	STRG.26749.1,STRG.26749.2,blat.proc3829901.chain_4	3	blat.proc3829901.chain_5	1
scaffold_12	starts_in_intron	6528303	6528303	-	asmbl_7675	none	STRG.14739.2	1	STRG.14739.1,blat.proc3829893.chain_3129,blat.proc3829893.chain_3130	3
scaffold_15	ends_in_intron	15915391	15915391	+	asmbl_14793,asmbl_14794	none	Trinity_GG_10379_c0_g1_i1,Trinity_GG_10379_c0_g1_i3,blat.proc3829879.chain_3524,blat.proc3829879.chain_3525	4	STRG.18967.1,STRG.18967.2	2
scaffold_12	alt_acceptor	10205978	10205979	+	asmbl_8882	none	STRG.14984.2	1	STRG.14984.1,blat.proc3829877.chain_3511	2
scaffold_6	spliced_intron	13974353	13974450	+	asmbl_47494	none	STRG.8142.1,Trinity_GG_4475_c0_g1_i3,blat.proc3829875.chain_570	3	blat.proc3829875.chain_571	1
scaffold_14	starts_in_intron	12831866	12831866	+	asmbl_12433	none	blat.proc3829879.chain_2261	1	STRG.17584.1,blat.proc3829879.chain_2262	2
scaffold_9	retained_exon	5173347	5174133	+	asmbl_53981	none	STRG.11086.1	1	STRG.11086.3	1
scaffold_1	spliced_intron	853703	854190	+	asmbl_1420,asmbl_1423,asmbl_1424,asmbl_1425	none	STRG.42.2,STRG.42.3,STRG.42.4,STRG.42.6	4	STRG.42.1	1
scaffold_24	retained_exon	722139	722201	+	asmbl_32049	none	STRG.26331.2	1	STRG.26331.1,Trinity_GG_14541_c1_g1_i1,blat.proc3829883.chain_3228	3
scaffold_7	alt_donor	3957765	3957766	-	asmbl_49654,asmbl_49655	none	STRG.8779.2,STRG.8779.3	2	STRG.8779.1,blat.proc3829891.chain_1076,blat.proc3829891.chain_1077	3
scaffold_2	spliced_intron	8302850	8304172	+	asmbl_24663,asmbl_24665	none	STRG.2116.1,STRG.2116.5,blat.proc3829871.chain_2249	3	STRG.2116.3,STRG.2116.4,Trinity_GG_1209_c0_g1_i3,blat.proc3829871.chain_2251	4
scaffold_5	retained_intron	1548461	1548586	-	asmbl_45249	none	Trinity_GG_20236_c0_g1_i4,blat.proc3829889.chain_1822,blat.proc3829901.chain_3397,blat.proc3829901.chain_3398	4	STRG.5706.3	1
scaffold_21	starts_in_intron	6588593	6588593	+	asmbl_28687	none	Trinity_GG_13390_c0_g1_i2,blat.proc3829883.chain_1316	2	STRG.24169.1,blat.proc3829883.chain_1317,blat.proc3829883.chain_1318	3
scaffold_10	alt_acceptor	8464041	8464042	-	asmbl_3504	none	STRG.12592.2,blat.proc3829893.chain_1093	2	STRG.12592.1,blat.proc3829893.chain_1092	2
scaffold_19	retained_intron	2348182	2348361	+	asmbl_22062	none	STRG.21936.1,blat.proc3829881.chain_2891	2	STRG.21936.2,blat.proc3829881.chain_2892	2
scaffold_7	spliced_intron	5927823	5928006	+	asmbl_50716	none	blat.proc3829875.chain_1205	1	blat.proc3829875.chain_1202	1
scaffold_14	starts_in_intron	12823944	12823944	-	asmbl_13601	none	STRG.17589.3,blat.proc3829895.chain_2337	2	STRG.17589.1,STRG.17589.2,STRG.17589.4,blat.proc3829895.chain_2338,blat.proc3829895.chain_2339,blat.proc3829895.chain_2340	6
scaffold_20	alternate_exon	10695177	10695256	+	asmbl_26140	none	STRG.23588.1	1	STRG.23588.2,STRG.23588.3,blat.proc3829883.chain_710,blat.proc3829883.chain_711	4
scaffold_25	starts_in_intron	5779013	5779013	+	asmbl_33582	none	STRG.27456.3	1	STRG.27456.1,STRG.27456.2,blat.proc3829885.chain_505	3
scaffold_23	starts_in_intron	272523	272523	-	asmbl_31295	none	blat.proc3829899.chain_2616	1	STRG.25529.1,blat.proc3829899.chain_2615,blat.proc3829899.chain_2617,blat.proc3829899.chain_2618	4
scaffold_2	starts_in_intron	33073	33073	+	asmbl_24080	none	Trinity_GG_850_c0_g1_i3,blat.proc3829871.chain_1522	2	STRG.1493.1,STRG.1493.3,STRG.1493.4,STRG.1493.5,blat.proc3829871.chain_1525,blat.proc3829871.chain_1527	6
scaffold_2	alt_acceptor	17454213	17454214	+	asmbl_25198	none	blat.proc3829871.chain_2847	1	STRG.2628.1	1
scaffold_7	spliced_intron	16829502	16829802	-	asmbl_50239	none	STRG.9583.1,Trinity_GG_22380_c0_g1_i1,blat.proc3829891.chain_1790	3	Trinity_GG_22380_c0_g1_i2,blat.proc3829891.chain_1791	2
scaffold_1	starts_in_intron	16731916	16731916	+	asmbl_2484	none	blat.proc3829871.chain_1242	1	STRG.1174.1,blat.proc3829871.chain_1241	2
scaffold_18	spliced_intron	4570648	4570743	+	asmbl_20563	none	STRG.21237.2	1	STRG.21237.1,blat.proc3829881.chain_2151,blat.proc3829881.chain_2152	3
scaffold_1	alternate_exon	20755379	20756162	+	asmbl_2638	none	STRG.1421.2,blat.proc3829871.chain_1475	2	STRG.1421.1,blat.proc3829871.chain_1473,blat.proc3829871.chain_1476	3
scaffold_23	alt_donor	10935482	10935483	-	asmbl_31888	none	STRG.26275.2	1	STRG.26275.1,blat.proc3829899.chain_3313	2
scaffold_1	skipped_exon	14320593	14321243	+	asmbl_2358	none	STRG.1024.1,blat.proc3829871.chain_1129	2	STRG.1024.3,STRG.1024.4,blat.proc3829871.chain_1126,blat.proc3829871.chain_1130	4
scaffold_16	alternate_exon	1779585	1779787	+	asmbl_16874	none	STRG.19095.2,Trinity_GG_10475_c0_g1_i5,blat.proc3829879.chain_3714	3	STRG.19095.3,blat.proc3829879.chain_3708	2
scaffold_17	alternate_exon	8218378	8220292	+	asmbl_18077	none	Trinity_GG_11183_c0_g2_i1,blat.proc3829881.chain_1196,blat.proc3829881.chain_1204	3	STRG.20435.3	1
scaffold_23	ends_in_intron	4315523	4315523	+	asmbl_30801,asmbl_30805	none	blat.proc3829883.chain_2712,blat.proc3829883.chain_2713	2	STRG.25826.1,blat.proc3829883.chain_2710,blat.proc3829883.chain_2716,blat.proc3829883.chain_2718	4
scaffold_24	retained_intron	655307	655405	+	asmbl_32037	none	Trinity_GG_14556_c0_g1_i1,blat.proc3829883.chain_3252	2	Trinity_GG_14556_c0_g1_i3,blat.proc3829883.chain_3251	2
scaffold_17	alternate_exon	7622708	7622876	+	asmbl_18043	none	STRG.20387.1	1	STRG.20387.2	1
scaffold_12	ends_in_intron	12504948	12504948	+	asmbl_8976	none	blat.proc3829877.chain_3564	1	STRG.15152.2,blat.proc3829877.chain_3563	2
scaffold_16	alt_acceptor	4910214	4910215	-	asmbl_16254,asmbl_16258	none	STRG.19258.1,STRG.19258.2,Trinity_GG_27837_c0_g1_i3,blat.proc3829897.chain_313	4	STRG.19258.3	1
scaffold_5	starts_in_intron	10195991	10195991	-	asmbl_45709	none	blat.proc3829889.chain_2391	1	STRG.6312.1,blat.proc3829889.chain_2386,blat.proc3829889.chain_2387,blat.proc3829889.chain_2388,blat.proc3829889.chain_2389,blat.proc3829889.chain_2393	6
scaffold_1	starts_in_intron	103170	103170	+	asmbl_1394,asmbl_1395	none	Trinity_GG_23_c0_g1_i1,Trinity_GG_23_c0_g1_i6,blat.proc3829871.chain_43,blat.proc3829871.chain_44	4	STRG.11.1,Trinity_GG_23_c0_g1_i2,Trinity_GG_23_c0_g1_i3,Trinity_GG_23_c0_g1_i7,blat.proc3829871.chain_40,blat.proc3829871.chain_41,blat.proc3829871.chain_42	7
scaffold_5	alt_acceptor	8368089	8368090	+	asmbl_44200	none	STRG.6168.1,Trinity_GG_3338_c0_g1_i1,blat.proc3829873.chain_2265,blat.proc3829873.chain_2266	4	STRG.6168.2	1
scaffold_1	alt_donor	4233790	4233791	+	asmbl_1642,asmbl_1643,asmbl_1645,asmbl_1649,asmbl_1650,asmbl_1652,asmbl_1653,asmbl_1654	none	STRG.253.1,STRG.253.2,STRG.253.3,blat.proc3829871.chain_224,blat.proc3829871.chain_225,blat.proc3829871.chain_227,blat.proc3829871.chain_228,blat.proc3829871.chain_229,blat.proc3829871.chain_230,blat.proc3829871.chain_232,blat.proc3829871.chain_233	11	STRG.253.4,blat.proc3829871.chain_231	2
scaffold_20	ends_in_intron	9106826	9106826	+	asmbl_25987	none	STRG.23442.2	1	STRG.23442.1,Trinity_GG_12953_c0_g1_i1,Trinity_GG_12953_c0_g1_i2,Trinity_GG_12953_c0_g1_i3,blat.proc3829883.chain_540,blat.proc3829883.chain_542,blat.proc3829883.chain_543	7
scaffold_15	retained_exon	15345897	15346020	+	asmbl_14703	none	STRG.18908.2	1	STRG.18908.1	1
scaffold_23	retained_intron	6632390	6632499	+	asmbl_30930	none	blat.proc3829883.chain_2813	1	STRG.25985.1,STRG.25985.2,blat.proc3829883.chain_2814,blat.proc3829883.chain_2815,blat.proc3829883.chain_2816,blat.proc3829883.chain_2817	6
scaffold_5	ends_in_intron	12482841	12482841	+	asmbl_44474	none	Trinity_GG_3508_c0_g1_i1,blat.proc3829873.chain_2588	2	STRG.6474.1	1
scaffold_6	ends_in_intron	12499891	12499891	+	asmbl_47345	none	STRG.8005.2,blat.proc3829875.chain_350,blat.proc3829875.chain_351	3	STRG.8005.1,blat.proc3829875.chain_345,blat.proc3829875.chain_346	3
scaffold_5	retained_exon	16844385	16844647	-	asmbl_46160	none	STRG.6862.3,blat.proc3829889.chain_2856	2	STRG.6862.1,blat.proc3829889.chain_2857	2
scaffold_25	retained_intron	4538956	4539139	+	asmbl_33508	none	Trinity_GG_15099_c0_g1_i6,blat.proc3829885.chain_412	2	STRG.27374.1,blat.proc3829885.chain_414	2
scaffold_7	ends_in_intron	1234334	1234334	+	asmbl_50483,asmbl_50484	none	blat.proc3829875.chain_1046,blat.proc3829875.chain_1047	2	STRG.8627.3,STRG.8627.7,STRG.8627.9,Trinity_GG_4740_c0_g1_i16,blat.proc3829875.chain_1042	5
scaffold_6	alt_donor	11012004	11012005	-	asmbl_48668	none	STRG.7909.3	1	STRG.7909.2,STRG.7909.4,blat.proc3829891.chain_198	3
scaffold_1	alternate_exon	3613545	3613589	-	asmbl_167	none	STRG.223.3,blat.proc3829887.chain_126	2	STRG.223.1,STRG.223.2,blat.proc3829887.chain_127,blat.proc3829887.chain_129	4
scaffold_4	alt_donor	17569561	17569562	-	asmbl_42039	none	STRG.5346.4	1	STRG.5346.1,STRG.5346.2,STRG.5346.3	3
scaffold_15	starts_in_intron	6115838	6115838	-	asmbl_15262	none	blat.proc3829895.chain_3041	1	STRG.18268.1,STRG.18268.2,blat.proc3829895.chain_3040	3
scaffold_18	ends_in_intron	3607909	3607909	+	asmbl_20487,asmbl_20488,asmbl_20490	none	STRG.21167.1,STRG.21167.3,STRG.21167.4,blat.proc3829881.chain_2055	4	STRG.21167.2	1
scaffold_26	starts_in_intron	7774483	7774483	+	asmbl_35673	none	STRG.28388.5	1	blat.proc3829885.chain_1359	1
scaffold_1	ends_in_intron	2790048	2790048	+	asmbl_1549	none	Trinity_GG_124_c3_g1_i1,blat.proc3829871.chain_208	2	STRG.177.1,STRG.177.2,blat.proc3829871.chain_204,blat.proc3829871.chain_205	4
scaffold_15	spliced_intron	12435253	12435567	+	asmbl_14509	none	STRG.18688.1	1	blat.proc3829879.chain_3278,blat.proc3829879.chain_3280,blat.proc3829879.chain_3282,blat.proc3829879.chain_3286	4
scaffold_6	ends_in_intron	16605055	16605055	+	asmbl_47645	none	blat.proc3829875.chain_762	1	STRG.8378.1,STRG.8378.2,STRG.8378.3,blat.proc3829875.chain_759	4
scaffold_1	ends_in_intron	12977842	12977842	+	asmbl_2273	none	blat.proc3829871.chain_1021	1	STRG.933.1	1
scaffold_28	spliced_intron	5611496	5611679	-	asmbl_37624,asmbl_37625	none	STRG.29674.1,STRG.29674.6,Trinity_GG_33655_c0_g1_i9,blat.proc3829901.chain_2806,blat.proc3829901.chain_2807	5	STRG.29674.2,STRG.29674.3,STRG.29674.4,STRG.29674.5,Trinity_GG_33655_c0_g1_i1,Trinity_GG_33655_c0_g1_i6,Trinity_GG_33655_c0_g1_i8,blat.proc3829901.chain_2808,blat.proc3829901.chain_2809,blat.proc3829901.chain_2810,blat.proc3829901.chain_2811	11
scaffold_12	retained_exon	14990638	14990697	-	asmbl_8158	none	STRG.15282.2,Trinity_GG_25571_c0_g1_i4,blat.proc3829893.chain_3744	3	STRG.15282.1,Trinity_GG_25571_c0_g1_i1,blat.proc3829893.chain_3742	3
scaffold_1	starts_in_intron	8144222	8144222	+	asmbl_1923	none	Trinity_GG_345_c0_g1_i1,blat.proc3829871.chain_607	2	STRG.542.1	1
scaffold_18	starts_in_intron	142121	142121	+	asmbl_20285	none	Trinity_GG_11525_c0_g1_i1,blat.proc3829881.chain_1800	2	STRG.20953.1	1
scaffold_1	alternate_exon	18339047	18339122	+	asmbl_2540	none	STRG.1291.2	1	STRG.1291.3,STRG.1291.4,blat.proc3829871.chain_1251	3
scaffold_13	ends_in_intron	4376687	4376687	+	asmbl_10769	none	blat.proc3829879.chain_407	1	STRG.15749.1,STRG.15749.2,blat.proc3829879.chain_404	3
scaffold_10	spliced_intron	17204036	17204220	-	asmbl_3942	none	blat.proc3829893.chain_1602,blat.proc3829893.chain_1606	2	Trinity_GG_24359_c1_g1_i6,blat.proc3829893.chain_1603	2
scaffold_20	alt_donor	6954612	6954613	-	asmbl_26771,asmbl_26774,asmbl_26778,asmbl_26779	none	STRG.23254.2,STRG.23254.3,blat.proc3829899.chain_237,blat.proc3829899.chain_239	4	STRG.23254.5,STRG.23254.6,STRG.23254.7,blat.proc3829899.chain_238	4
scaffold_16	alternate_exon	14542299	14546073	-	asmbl_16640	none	STRG.19822.1,Trinity_GG_28106_c0_g1_i1,blat.proc3829897.chain_790,blat.proc3829897.chain_791	4	STRG.19822.3	1
scaffold_6	alt_acceptor	8054841	8054842	+	asmbl_47028	none	STRG.7677.2	1	STRG.7677.1,blat.proc3829875.chain_31	2
scaffold_22	retained_exon	9244217	9244318	+	asmbl_29592	none	STRG.25253.2,blat.proc3829883.chain_2266	2	STRG.25253.1,blat.proc3829883.chain_2267	2
scaffold_16	ends_in_intron	12650884	12650884	+	asmbl_17446	none	STRG.19746.1	1	STRG.19746.2,blat.proc3829881.chain_626	2
scaffold_1	retained_intron	12689792	12689998	-	asmbl_751	none	STRG.891.3,Trinity_GG_17484_c0_g1_i1,Trinity_GG_17484_c0_g1_i2,blat.proc3829887.chain_795,blat.proc3829887.chain_797	5	STRG.891.1,STRG.891.2,STRG.891.4,blat.proc3829887.chain_796	4
scaffold_4	spliced_intron	115885	116152	-	asmbl_41049	none	STRG.4111.1,blat.proc3829889.chain_208	2	STRG.4111.2,Trinity_GG_19297_c0_g1_i1,blat.proc3829889.chain_207	3
scaffold_26	alternate_exon	3784387	3784850	-	asmbl_34776	none	STRG.28046.1,blat.proc3829901.chain_1262	2	blat.proc3829901.chain_1263	1
scaffold_14	alt_donor	12707520	12707521	-	asmbl_13576	none	STRG.17568.1	1	STRG.17568.2	1
scaffold_6	retained_intron	9170836	9170927	+	asmbl_47161	none	Trinity_GG_4279_c0_g1_i2,blat.proc3829875.chain_170	2	STRG.7785.1,Trinity_GG_4279_c0_g1_i1,blat.proc3829875.chain_171	3
scaffold_2	starts_in_intron	18710203	18710203	+	asmbl_25270	none	STRG.2748.3	1	STRG.2748.1,STRG.2748.2,Trinity_GG_1549_c1_g1_i2,blat.proc3829871.chain_2923,blat.proc3829871.chain_2924,blat.proc3829871.chain_2925	6
scaffold_10	skipped_exon	11601926	11602458	+	asmbl_4760	none	blat.proc3829877.chain_1378	1	STRG.12807.1,STRG.12807.2,STRG.12807.5,blat.proc3829877.chain_1380,blat.proc3829877.chain_1381,blat.proc3829877.chain_1384	6
scaffold_16	starts_in_intron	7607841	7607841	-	asmbl_16366	none	blat.proc3829897.chain_439	1	STRG.19403.1,blat.proc3829897.chain_438	2
scaffold_25	alternate_exon	4870849	4870934	-	asmbl_34211	none	STRG.27399.1,Trinity_GG_32366_c0_g1_i1,blat.proc3829901.chain_701	3	STRG.27399.2,Trinity_GG_32366_c0_g1_i2,blat.proc3829901.chain_702	3
scaffold_9	retained_intron	9656350	9656875	+	asmbl_54208	none	blat.proc3829877.chain_99	1	STRG.11332.1,STRG.11332.2,blat.proc3829877.chain_100,blat.proc3829877.chain_98	4
scaffold_2	retained_intron	2960170	2960333	+	asmbl_24283	none	STRG.1730.1,Trinity_GG_983_c0_g1_i1,blat.proc3829871.chain_1797	3	STRG.1730.2,Trinity_GG_983_c0_g1_i2	2
scaffold_12	ends_in_intron	4755892	4755892	-	asmbl_7575,asmbl_7576	none	STRG.14641.3,STRG.14641.4,blat.proc3829893.chain_2975,blat.proc3829893.chain_2976	4	STRG.14641.1,STRG.14641.2,blat.proc3829893.chain_2977	3
scaffold_5	alt_donor	8131648	8131649	+	asmbl_44191	none	STRG.6170.1,blat.proc3829873.chain_2319	2	STRG.6170.2,blat.proc3829873.chain_2321	2
scaffold_17	alt_acceptor	13610473	13610474	+	asmbl_18459	none	STRG.20825.1	1	STRG.20825.2	1
scaffold_23	alt_acceptor	10988338	10988339	-	asmbl_31898	none	Trinity_GG_31677_c0_g1_i5,blat.proc3829899.chain_3316	2	STRG.26288.1,STRG.26288.2,blat.proc3829899.chain_3315,blat.proc3829899.chain_3317	4
scaffold_13	alternate_exon	1520328	1520389	-	asmbl_9378	none	Trinity_GG_25702_c0_g1_i1,blat.proc3829895.chain_262	2	STRG.15500.3	1
scaffold_15	spliced_intron	1797670	1797717	-	asmbl_14984	none	STRG.17966.1	1	blat.proc3829895.chain_2676	1
scaffold_12	retained_exon	10004421	10004603	-	asmbl_7843	none	STRG.14963.1	1	STRG.14963.2,blat.proc3829893.chain_3284	2
scaffold_2	skipped_exon	9189964	9190602	-	asmbl_23377,asmbl_23380	none	STRG.2167.2,Trinity_GG_18242_c0_g1_i1,Trinity_GG_18242_c0_g1_i3,blat.proc3829887.chain_2099,blat.proc3829887.chain_2100	5	STRG.2167.1,Trinity_GG_18242_c0_g1_i12,Trinity_GG_18242_c0_g1_i2,Trinity_GG_18242_c0_g1_i4,Trinity_GG_18242_c0_g1_i7,blat.proc3829887.chain_2101,blat.proc3829887.chain_2102,blat.proc3829887.chain_2103,blat.proc3829887.chain_2104	9
scaffold_12	retained_intron	7275468	7275640	-	asmbl_7694	none	Trinity_GG_25259_c0_g1_i2,blat.proc3829893.chain_3175	2	STRG.14787.1,STRG.14787.2,STRG.14787.3,Trinity_GG_25259_c0_g1_i1,Trinity_GG_25259_c0_g1_i3,blat.proc3829893.chain_3176,blat.proc3829893.chain_3177	7
scaffold_5	starts_in_intron	6190640	6190640	+	asmbl_44072	none	Trinity_GG_3316_c0_g1_i6,blat.proc3829873.chain_2225	2	STRG.6025.1,STRG.6025.2,Trinity_GG_3316_c0_g1_i1,blat.proc3829873.chain_2222,blat.proc3829873.chain_2223,blat.proc3829873.chain_2226,blat.proc3829873.chain_2227	7
scaffold_26	alt_acceptor	10121650	10121651	-	asmbl_35088,asmbl_35091,asmbl_35093	none	STRG.28511.1,Trinity_GG_32936_c0_g1_i11,Trinity_GG_32936_c0_g1_i5,blat.proc3829901.chain_1633,blat.proc3829901.chain_1634	5	STRG.28511.2,Trinity_GG_32936_c0_g1_i3,blat.proc3829901.chain_1635	3
scaffold_25	spliced_intron	6066916	6067033	-	asmbl_34287,asmbl_34291,asmbl_34292,asmbl_34293,asmbl_34294	none	STRG.27475.1,blat.proc3829901.chain_716,blat.proc3829901.chain_718,blat.proc3829901.chain_719,blat.proc3829901.chain_721,blat.proc3829901.chain_722	6	blat.proc3829901.chain_717	1
scaffold_13	retained_intron	9535986	9536192	-	asmbl_9991,asmbl_9993	none	STRG.16202.1,STRG.16202.2,blat.proc3829895.chain_990	3	STRG.16202.4	1
scaffold_25	retained_exon	3293326	3293378	-	asmbl_34107	none	STRG.27260.4	1	STRG.27260.1,STRG.27260.3,blat.proc3829901.chain_581	3
scaffold_11	alternate_exon	11635942	11636184	+	asmbl_5946	none	STRG.14080.1,blat.proc3829877.chain_2568	2	blat.proc3829877.chain_2571,blat.proc3829877.chain_2573,blat.proc3829877.chain_2574	3
scaffold_26	alternate_exon	5035098	5035808	+	asmbl_35467	none	blat.proc3829885.chain_1160	1	blat.proc3829885.chain_1156,blat.proc3829885.chain_1159,blat.proc3829885.chain_1166	3
scaffold_2	starts_in_intron	2790038	2790038	-	asmbl_22940	none	blat.proc3829887.chain_1560	1	STRG.1724.1,STRG.1724.2,blat.proc3829887.chain_1558,blat.proc3829887.chain_1561	4
scaffold_23	alt_acceptor	7231389	7231390	+	asmbl_30978,asmbl_30980	none	STRG.26027.2,STRG.26027.3	2	STRG.26027.1	1
scaffold_18	ends_in_intron	613406	613406	+	asmbl_20331	none	blat.proc3829881.chain_1834	1	STRG.20989.1,blat.proc3829881.chain_1835	2
scaffold_4	retained_intron	5651946	5652054	-	asmbl_41355,asmbl_41356,asmbl_41360,asmbl_41364	none	STRG.4469.1,Trinity_GG_19533_c0_g1_i2,blat.proc3829889.chain_602,blat.proc3829889.chain_607,blat.proc3829889.chain_610	5	STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_605,blat.proc3829889.chain_606,blat.proc3829889.chain_608,blat.proc3829889.chain_611,blat.proc3829889.chain_612,blat.proc3829889.chain_613	10
scaffold_14	alternate_exon	11649410	11649799	-	asmbl_13495	none	STRG.17488.1,blat.proc3829895.chain_2212	2	blat.proc3829895.chain_2213	1
scaffold_10	ends_in_intron	4128270	4128270	-	asmbl_3177	none	Trinity_GG_23810_c0_g1_i1,blat.proc3829893.chain_639	2	STRG.12241.1,STRG.12241.2,blat.proc3829893.chain_640,blat.proc3829893.chain_642	4
scaffold_6	alt_donor	2481612	2481613	-	asmbl_48080	none	blat.proc3829889.chain_3223	1	blat.proc3829889.chain_3219	1
scaffold_5	spliced_intron	9085338	9085480	+	asmbl_44266,asmbl_44268,asmbl_44269	none	STRG.6237.4,STRG.6237.5,blat.proc3829873.chain_2426	3	STRG.6237.2,blat.proc3829873.chain_2418,blat.proc3829873.chain_2421,blat.proc3829873.chain_2422,blat.proc3829873.chain_2424	5
scaffold_12	ends_in_intron	11380075	11380075	-	asmbl_7943	none	Trinity_GG_25429_c0_g1_i3,blat.proc3829893.chain_3479	2	STRG.15060.1,blat.proc3829893.chain_3480	2
scaffold_11	ends_in_intron	15834158	15834158	+	asmbl_6119	none	Trinity_GG_7857_c0_g1_i4	1	STRG.14312.1,STRG.14312.2,STRG.14312.3,blat.proc3829877.chain_2734,blat.proc3829877.chain_2735,blat.proc3829877.chain_2737	6
scaffold_5	spliced_intron	5972142	5972548	+	asmbl_44046	none	blat.proc3829873.chain_2174	1	STRG.6001.1	1
scaffold_15	retained_exon	10880031	10880144	-	asmbl_15478	none	STRG.18561.1,blat.proc3829895.chain_3298	2	STRG.18561.2,blat.proc3829895.chain_3299	2
scaffold_26	spliced_intron	5043870	5044023	+	asmbl_35463,asmbl_35464,asmbl_35466,asmbl_35468,asmbl_35469,asmbl_35479,asmbl_35480,asmbl_35481	none	STRG.28206.1,blat.proc3829885.chain_1156,blat.proc3829885.chain_1157,blat.proc3829885.chain_1158,blat.proc3829885.chain_1159,blat.proc3829885.chain_1163,blat.proc3829885.chain_1164,blat.proc3829885.chain_1168,blat.proc3829885.chain_1169	9	blat.proc3829883.chain_2394,blat.proc3829883.chain_2396,blat.proc3829885.chain_1167	3
scaffold_26	retained_intron	6656037	6656136	+	asmbl_35625	none	blat.proc3829885.chain_1289	1	STRG.28361.1,blat.proc3829885.chain_1287,blat.proc3829885.chain_1288,blat.proc3829885.chain_1290	4
scaffold_3	spliced_intron	13419144	13419481	-	asmbl_39216	none	STRG.3690.4	1	STRG.3690.1,STRG.3690.3,Trinity_GG_19014_c0_g1_i4,blat.proc3829887.chain_3422	4
scaffold_1	alt_donor	16487557	16487558	-	asmbl_992,asmbl_997	none	STRG.1157.1,blat.proc3829887.chain_1054,blat.proc3829887.chain_1057	3	STRG.1157.2,blat.proc3829887.chain_1053	2
scaffold_23	ends_in_intron	1198655	1198655	+	asmbl_30622	none	blat.proc3829883.chain_2510	1	STRG.25586.1,blat.proc3829883.chain_2511	2
scaffold_21	alt_acceptor	266838	266839	+	asmbl_28273	none	STRG.23710.2,Trinity_GG_13138_c0_g1_i3,blat.proc3829883.chain_871	3	STRG.23710.1,Trinity_GG_13138_c0_g1_i1,blat.proc3829883.chain_872	3
scaffold_3	alt_donor	17116324	17116325	+	asmbl_40605,asmbl_40609,asmbl_40610	none	STRG.3957.3,STRG.3957.4,STRG.3957.6,blat.proc3829873.chain_317	4	STRG.3957.2,STRG.3957.7,Trinity_GG_2203_c0_g1_i10,blat.proc3829873.chain_322	4
scaffold_6	alternate_exon	2480020	2481735	-	asmbl_48080	none	blat.proc3829889.chain_3223	1	STRG.7236.2	1
scaffold_2	spliced_intron	15263572	15263652	+	asmbl_25017	none	STRG.2479.1,blat.proc3829871.chain_2555	2	blat.proc3829871.chain_2553	1
scaffold_10	ends_in_intron	3793933	3793933	-	asmbl_3144	none	Trinity_GG_23826_c0_g1_i1,blat.proc3829893.chain_664	2	STRG.12214.1,STRG.12214.3,blat.proc3829893.chain_665	3
scaffold_7	spliced_intron	124900	125149	-	asmbl_49477,asmbl_49478,asmbl_49479,asmbl_49482	none	STRG.8585.1,STRG.8585.4,STRG.8585.8,blat.proc3829891.chain_998	4	STRG.8585.2,blat.proc3829891.chain_992	2
scaffold_6	starts_in_intron	236161	236161	+	asmbl_46595	none	blat.proc3829873.chain_3232	1	STRG.7079.1,blat.proc3829873.chain_3233	2
scaffold_16	ends_in_intron	7949779	7949779	-	asmbl_16389	none	blat.proc3829897.chain_440	1	STRG.19428.1,STRG.19428.2,blat.proc3829897.chain_441	3
scaffold_322	spliced_intron	6549	6737	-	asmbl_40915	none	STRG.30256.1	1	Trinity_GG_33980_c0_g1_i6,Trinity_GG_34090_c0_g1_i4,blat.proc3829901.chain_3329	3
scaffold_14	alternate_exon	8292338	8292461	-	asmbl_13264	none	STRG.17238.2	1	STRG.17238.1,blat.proc3829895.chain_1943	2
scaffold_13	alt_acceptor	2653343	2653344	-	asmbl_9425,asmbl_9428	none	STRG.15566.1,blat.proc3829895.chain_303,blat.proc3829895.chain_305	3	STRG.15566.2	1
scaffold_21	alt_donor	1174729	1174730	-	asmbl_27415	none	STRG.23778.3	1	STRG.23778.1,STRG.23778.2,Trinity_GG_30262_c0_g1_i2,Trinity_GG_30262_c0_g1_i3,blat.proc3829899.chain_856,blat.proc3829899.chain_857	6
scaffold_17	alt_acceptor	7102086	7102087	+	asmbl_18026	none	STRG.20368.2,blat.proc3829881.chain_1136	2	STRG.20368.1,blat.proc3829881.chain_1135	2
scaffold_19	starts_in_intron	8344258	8344258	+	asmbl_22321	none	Trinity_GG_12302_c0_g1_i2,blat.proc3829881.chain_3196	2	STRG.22284.1,blat.proc3829881.chain_3194,blat.proc3829881.chain_3195	3
scaffold_14	retained_exon	1070085	1070201	+	asmbl_11764,asmbl_11767,asmbl_11768,asmbl_11771,asmbl_11772	none	STRG.16754.1,STRG.16754.2,STRG.16754.4,blat.proc3829879.chain_1436,blat.proc3829879.chain_1441	5	STRG.16754.5	1
scaffold_13	retained_intron	3055042	3055287	-	asmbl_9471	none	STRG.15597.3	1	STRG.15597.1,STRG.15597.2,blat.proc3829895.chain_335	3
scaffold_12	spliced_intron	12291139	12292234	-	asmbl_7989,asmbl_7990,asmbl_7991	none	STRG.15114.4,STRG.15114.5,STRG.15114.6	3	STRG.15114.1,STRG.15114.3,Trinity_GG_25420_c0_g1_i5,Trinity_GG_25420_c1_g1_i1,blat.proc3829893.chain_3457,blat.proc3829893.chain_3462	6
scaffold_16	alternate_exon	12642265	12642776	-	asmbl_16577	none	STRG.19744.2,blat.proc3829897.chain_656	2	STRG.19744.1,blat.proc3829897.chain_655	2
scaffold_11	retained_intron	17374697	17374848	+	asmbl_6203	none	Trinity_GG_7898_c0_g1_i2,blat.proc3829877.chain_2824	2	STRG.14392.1,STRG.14392.2,blat.proc3829877.chain_2826	3
scaffold_21	alternate_exon	9836863	9836975	-	asmbl_27992	none	STRG.24425.2	1	STRG.24425.1	1
scaffold_17	alternate_exon	2629819	2630005	+	asmbl_17806	none	STRG.20044.3	1	Trinity_GG_10982_c0_g1_i2,blat.proc3829881.chain_878	2
scaffold_20	retained_exon	11948578	11948624	-	asmbl_27134	none	blat.proc3829899.chain_603	1	blat.proc3829899.chain_605,blat.proc3829899.chain_606	2
scaffold_6	ends_in_intron	12412638	12412638	-	asmbl_48737	none	STRG.7990.5,Trinity_GG_21559_c1_g1_i1,blat.proc3829891.chain_295	3	STRG.7990.1,STRG.7990.2,STRG.7990.3,STRG.7990.4,blat.proc3829891.chain_292,blat.proc3829891.chain_293,blat.proc3829891.chain_294	7
scaffold_10	alt_acceptor	3739162	3739163	+	asmbl_4349	none	STRG.12194.1,blat.proc3829877.chain_875	2	STRG.12194.2	1
scaffold_16	retained_intron	7520401	7520519	+	asmbl_17140	none	blat.proc3829881.chain_223	1	STRG.19391.3,blat.proc3829881.chain_221	2
scaffold_10	ends_in_intron	3127907	3127907	-	asmbl_3078	none	STRG.12126.1,Trinity_GG_23770_c0_g1_i1	2	blat.proc3829893.chain_583	1
scaffold_19	retained_intron	8805742	8805817	+	asmbl_22361	none	STRG.22319.3	1	STRG.22319.2	1
scaffold_20	starts_in_intron	8114013	8114013	-	asmbl_26884	none	blat.proc3829899.chain_420	1	STRG.23348.1,STRG.23348.2,blat.proc3829899.chain_419,blat.proc3829899.chain_421,blat.proc3829899.chain_422	5
scaffold_18	retained_intron	11328837	11329142	+	asmbl_20962	none	blat.proc3829881.chain_2655	1	STRG.21666.1,STRG.21666.2,blat.proc3829881.chain_2648,blat.proc3829881.chain_2651	4
scaffold_28	skipped_exon	8412619	8414892	+	asmbl_38440	none	Trinity_GG_16556_c0_g1_i1,blat.proc3829885.chain_2985	2	STRG.29890.1,Trinity_GG_16556_c0_g1_i2,blat.proc3829885.chain_2986	3
scaffold_27	ends_in_intron	2831797	2831797	+	asmbl_36083	none	blat.proc3829885.chain_1825	1	STRG.28748.3,blat.proc3829885.chain_1826	2
scaffold_27	starts_in_intron	4327782	4327782	+	asmbl_36232	none	STRG.28873.4,Trinity_GG_15982_c0_g1_i2,blat.proc3829885.chain_1980	3	STRG.28873.2,Trinity_GG_15982_c0_g1_i1,blat.proc3829885.chain_1981	3
scaffold_1	starts_in_intron	20789651	20789651	+	asmbl_2645	none	Trinity_GG_832_c0_g1_i1,blat.proc3829871.chain_1489	2	STRG.1432.1,blat.proc3829871.chain_1488	2
scaffold_11	retained_exon	3496723	3498441	+	asmbl_5401	none	STRG.13472.3	1	STRG.13472.4	1
scaffold_3	retained_intron	18937824	18937857	+	asmbl_40710	none	blat.proc3829873.chain_426	1	STRG.4063.4	1
scaffold_9	spliced_intron	9547344	9547423	+	asmbl_54190	none	STRG.11303.1,blat.proc3829875.chain_3741	2	blat.proc3829875.chain_3740	1
scaffold_70	alt_donor	8054	8055	-	asmbl_51543	none	STRG.30086.1	1	STRG.30086.2,Trinity_GG_33885_c0_g1_i1,blat.proc3829901.chain_3187,blat.proc3829901.chain_3188	4
scaffold_25	retained_intron	3095414	3095695	-	asmbl_34084	none	blat.proc3829901.chain_496	1	STRG.27230.1,STRG.27230.2,STRG.27230.3,Trinity_GG_32229_c2_g1_i1,blat.proc3829901.chain_497	5
scaffold_2	alt_acceptor	3991121	3991122	+	asmbl_24345	none	STRG.1835.1	1	STRG.1835.3	1
scaffold_14	alt_acceptor	11076259	11076260	-	asmbl_13426,asmbl_13428	none	STRG.17431.2,STRG.17431.3,blat.proc3829895.chain_2140	3	STRG.17431.1	1
scaffold_3	retained_intron	4304074	4304185	+	asmbl_39967	none	STRG.3127.1	1	STRG.3127.2	1
scaffold_1	alt_donor	9109452	9109453	+	asmbl_1948	none	STRG.602.2	1	STRG.602.1,blat.proc3829871.chain_670,blat.proc3829871.chain_671	3
scaffold_13	spliced_intron	6949079	6950695	-	asmbl_9779,asmbl_9780	none	STRG.15968.2,STRG.15968.4	2	STRG.15968.1,STRG.15968.6,Trinity_GG_25972_c0_g1_i5	3
scaffold_7	alt_acceptor	1679718	1679719	+	asmbl_50497	none	STRG.8641.1,Trinity_GG_4747_c0_g1_i1,blat.proc3829875.chain_1070	3	STRG.8641.2	1
scaffold_3	alt_acceptor	3315306	3315307	+	asmbl_39910	none	blat.proc3829887.chain_2845	1	blat.proc3829887.chain_2846	1
scaffold_5	alternate_exon	7320077	7320648	+	asmbl_44152,asmbl_44153,asmbl_44154	none	STRG.6121.1,STRG.6121.2,blat.proc3829873.chain_2277	3	Trinity_GG_3345_c0_g1_i1,Trinity_GG_3345_c0_g1_i2,blat.proc3829873.chain_2275,blat.proc3829873.chain_2276	4
scaffold_21	retained_intron	8920825	8921417	+	asmbl_28847,asmbl_28848	none	STRG.24399.2,Trinity_GG_13512_c0_g1_i2,blat.proc3829883.chain_1511,blat.proc3829883.chain_1512	4	STRG.24399.1	1
scaffold_1	retained_exon	18485977	18486046	-	asmbl_1111	none	blat.proc3829887.chain_1212	1	STRG.1300.2,blat.proc3829887.chain_1210	2
scaffold_5	spliced_intron	6658604	6658738	+	asmbl_44105	none	STRG.6065.2	1	STRG.6065.3,blat.proc3829873.chain_2177	2
scaffold_12	retained_exon	13030878	13030948	-	asmbl_8035,asmbl_8036	none	STRG.15173.1,STRG.15173.2	2	STRG.15173.3,blat.proc3829893.chain_3570,blat.proc3829893.chain_3571	3
scaffold_8	spliced_intron	8180856	8181693	+	asmbl_51988,asmbl_51989,asmbl_51990,asmbl_51991	none	STRG.10093.1,STRG.10093.2,STRG.10093.3,STRG.10093.4,blat.proc3829875.chain_2575	5	blat.proc3829875.chain_2572	1
scaffold_7	spliced_intron	13952403	13952512	+	asmbl_51271,asmbl_51272	none	STRG.9478.1,Trinity_GG_5270_c0_g1_i2,blat.proc3829875.chain_1947	3	Trinity_GG_5270_c0_g1_i5,blat.proc3829875.chain_1946	2
scaffold_3	starts_in_intron	13682771	13682771	-	asmbl_39236	none	blat.proc3829887.chain_3480	1	STRG.3707.1	1
scaffold_21	starts_in_intron	5134934	5134934	-	asmbl_27637	none	STRG.24046.6	1	STRG.24046.1,STRG.24046.3,STRG.24046.4,STRG.24046.7	4
scaffold_11	retained_intron	16651862	16652153	+	asmbl_6151,asmbl_6153	none	blat.proc3829877.chain_2839,blat.proc3829877.chain_2842	2	STRG.14353.1,blat.proc3829877.chain_2841	2
scaffold_24	starts_in_intron	7165642	7165642	+	asmbl_32380	none	blat.proc3829883.chain_3672	1	STRG.26748.1,STRG.26748.2,blat.proc3829883.chain_3671	3
scaffold_3	starts_in_intron	1476764	1476764	+	asmbl_39808	none	Trinity_GG_1652_c0_g1_i1,blat.proc3829871.chain_3084	2	STRG.2965.1,Trinity_GG_1652_c0_g1_i2,blat.proc3829871.chain_3085	3
scaffold_19	spliced_intron	2781526	2781716	+	asmbl_22076,asmbl_22077,asmbl_22078,asmbl_22081,asmbl_22082	none	STRG.21950.1,STRG.21950.2,STRG.21950.3,STRG.21950.4,STRG.21950.5	5	blat.proc3829881.chain_2913	1
scaffold_11	ends_in_intron	17180731	17180731	+	asmbl_6181	none	STRG.14368.2,Trinity_GG_7888_c1_g2_i1,blat.proc3829877.chain_2799	3	STRG.14368.1,Trinity_GG_7888_c1_g2_i2,blat.proc3829877.chain_2798	3
scaffold_17	spliced_intron	1289822	1289896	-	asmbl_18724,asmbl_18725,asmbl_18726,asmbl_18727	none	STRG.19952.1,STRG.19952.3,STRG.19952.4,STRG.19952.5,blat.proc3829897.chain_838,blat.proc3829897.chain_840,blat.proc3829897.chain_841,blat.proc3829897.chain_843	8	Trinity_GG_28167_c0_g1_i4,blat.proc3829897.chain_836,blat.proc3829897.chain_842	3
scaffold_7	retained_intron	5183050	5183286	-	asmbl_49688	none	STRG.8845.2,blat.proc3829891.chain_1158	2	STRG.8845.1,blat.proc3829891.chain_1159	2
scaffold_14	spliced_intron	151364	151716	-	asmbl_12761,asmbl_12764,asmbl_12765	none	STRG.16700.4,STRG.16700.5,blat.proc3829895.chain_1383	3	Trinity_GG_26353_c0_g1_i1,blat.proc3829895.chain_1387,blat.proc3829895.chain_1388	3
scaffold_19	retained_intron	13161925	13162003	+	asmbl_22668	none	blat.proc3829881.chain_3595	1	STRG.22627.1,STRG.22627.2,blat.proc3829881.chain_3594	3
scaffold_1	spliced_intron	14191116	14191205	-	asmbl_872,asmbl_877,asmbl_878,asmbl_880	none	STRG.1005.1,blat.proc3829887.chain_944,blat.proc3829887.chain_945,blat.proc3829887.chain_947,blat.proc3829887.chain_949	5	blat.proc3829887.chain_948	1
scaffold_25	ends_in_intron	9051577	9051577	+	asmbl_33765	none	blat.proc3829885.chain_737	1	STRG.27697.1,blat.proc3829885.chain_736	2
scaffold_17	spliced_intron	1054915	1055189	-	asmbl_18712	none	STRG.19935.1,blat.proc3829897.chain_820	2	STRG.19935.2,blat.proc3829897.chain_821	2
scaffold_5	spliced_intron	6835252	6835402	-	asmbl_45536	none	STRG.6084.1,blat.proc3829889.chain_2180	2	STRG.6084.2	1
scaffold_7	spliced_intron	3954085	3954301	-	asmbl_49643,asmbl_49644,asmbl_49645,asmbl_49646,asmbl_49647	none	STRG.8791.1,STRG.8791.2,blat.proc3829891.chain_1086,blat.proc3829891.chain_1087,blat.proc3829891.chain_1088,blat.proc3829891.chain_1089,blat.proc3829891.chain_1090	7	blat.proc3829891.chain_1091,blat.proc3829891.chain_1092,blat.proc3829891.chain_1093	3
scaffold_16	ends_in_intron	7241236	7241236	-	asmbl_16352	none	blat.proc3829897.chain_419	1	STRG.19382.6	1
scaffold_11	alt_donor	8596960	8596961	+	asmbl_5768,asmbl_5769,asmbl_5770	none	STRG.13863.1,Trinity_GG_7654_c0_g1_i1,Trinity_GG_7654_c0_g1_i2,Trinity_GG_7654_c0_g1_i7,blat.proc3829877.chain_2375,blat.proc3829877.chain_2378,blat.proc3829877.chain_2379	7	STRG.13863.2,STRG.13863.3,blat.proc3829877.chain_2376	3
scaffold_16	alt_donor	751426	751427	-	asmbl_16072	none	STRG.19044.2	1	STRG.19044.1,blat.proc3829897.chain_10,blat.proc3829897.chain_11,blat.proc3829897.chain_13,blat.proc3829897.chain_14,blat.proc3829897.chain_9	6
scaffold_21	alternate_exon	5519925	5520447	-	asmbl_27691	none	blat.proc3829899.chain_1154	1	blat.proc3829899.chain_1156	1
scaffold_6	retained_exon	2481736	2481853	-	asmbl_48075	none	STRG.7236.1,blat.proc3829889.chain_3220	2	STRG.7236.3	1
scaffold_4	retained_exon	5677972	5678066	+	asmbl_42695	none	STRG.4466.2,blat.proc3829873.chain_827	2	STRG.4466.1,blat.proc3829873.chain_828	2
scaffold_4	alt_acceptor	18554641	18554642	-	asmbl_42131,asmbl_42132,asmbl_42133	none	STRG.5457.1,blat.proc3829889.chain_1543,blat.proc3829889.chain_1544,blat.proc3829889.chain_1545	4	STRG.5457.2	1
scaffold_1	alt_acceptor	4239797	4239798	+	asmbl_1643,asmbl_1648,asmbl_1653	none	STRG.253.3,STRG.253.4,blat.proc3829871.chain_228,blat.proc3829871.chain_232	4	blat.proc3829871.chain_227,blat.proc3829871.chain_230	2
scaffold_23	skipped_exon	7938919	7940270	-	asmbl_31782	none	STRG.26079.2	1	STRG.26079.3,Trinity_GG_31604_c2_g1_i1,blat.proc3829899.chain_3196,blat.proc3829899.chain_3197,blat.proc3829899.chain_3198	5
scaffold_26	alt_acceptor	1942317	1942318	-	asmbl_34701	none	STRG.27916.2	1	STRG.27916.1	1
scaffold_13	alt_acceptor	4016234	4016235	+	asmbl_10733	none	blat.proc3829879.chain_409	1	blat.proc3829879.chain_410	1
scaffold_2	alt_acceptor	2543451	2543452	-	asmbl_22925,asmbl_22927,asmbl_22928	none	STRG.1696.1,STRG.1696.2,blat.proc3829887.chain_1538,blat.proc3829887.chain_1540	4	STRG.1696.3	1
scaffold_22	spliced_intron	214606	214723	+	asmbl_29113,asmbl_29115,asmbl_29116,asmbl_29117	none	STRG.24661.2,STRG.24661.3,STRG.24661.4,STRG.24661.6,blat.proc3829883.chain_1717	5	STRG.24661.1,STRG.24661.5,Trinity_GG_13639_c0_g1_i4,blat.proc3829883.chain_1716,blat.proc3829883.chain_1718	5
scaffold_26	retained_intron	9773422	9774174	+	asmbl_35777,asmbl_35779,asmbl_35782,asmbl_35783,asmbl_35784,asmbl_35785	none	STRG.28501.2,STRG.28501.6,Trinity_GG_15770_c0_g1_i5,blat.proc3829885.chain_1534	4	STRG.28501.10,STRG.28501.4	2
scaffold_21	ends_in_intron	7937501	7937501	-	asmbl_27889	none	Trinity_GG_30562_c0_g1_i1,blat.proc3829899.chain_1373	2	STRG.24314.1,blat.proc3829899.chain_1370,blat.proc3829899.chain_1374	3
scaffold_27	alt_acceptor	5777205	5777206	-	asmbl_36973	none	STRG.28955.2	1	STRG.28955.1,blat.proc3829901.chain_2080	2
scaffold_12	alternate_exon	11690937	11691694	-	asmbl_7955	none	STRG.15080.2,blat.proc3829893.chain_3430	2	STRG.15080.1,blat.proc3829893.chain_3428	2
scaffold_5	retained_intron	14680454	14680588	+	asmbl_44624	none	Trinity_GG_3607_c0_g1_i2,blat.proc3829873.chain_2738	2	STRG.6663.1,Trinity_GG_3607_c0_g1_i4,blat.proc3829873.chain_2739	3
scaffold_13	starts_in_intron	15200363	15200363	-	asmbl_10196	none	blat.proc3829895.chain_1262	1	STRG.16553.1,blat.proc3829895.chain_1264	2
scaffold_6	spliced_intron	11463538	11463675	-	asmbl_48691,asmbl_48692	none	STRG.7935.1,blat.proc3829891.chain_179,blat.proc3829891.chain_181	3	blat.proc3829891.chain_180	1
scaffold_22	retained_exon	9721164	9721268	+	asmbl_29602	none	STRG.25292.2	1	STRG.25292.4	1
scaffold_19	skipped_exon	10204950	10206951	+	asmbl_22428	none	STRG.22388.1,blat.proc3829881.chain_3294	2	STRG.22388.2,blat.proc3829881.chain_3295	2
scaffold_7	retained_exon	12269185	12269733	+	asmbl_51110	none	STRG.9313.1,STRG.9313.2,STRG.9313.5,Trinity_GG_5141_c0_g1_i1,Trinity_GG_5141_c0_g1_i2,blat.proc3829875.chain_1714,blat.proc3829875.chain_1716	7	STRG.9313.3	1
scaffold_6	ends_in_intron	10373886	10373886	-	asmbl_48629	none	blat.proc3829891.chain_139	1	STRG.7867.1,Trinity_GG_21473_c0_g1_i3,blat.proc3829891.chain_140	3
scaffold_20	alternate_exon	1569955	1570189	-	asmbl_26515	none	STRG.22870.3,blat.proc3829897.chain_3649	2	STRG.22870.1,blat.proc3829897.chain_3648	2
scaffold_9	alt_donor	6905138	6905139	-	asmbl_55062	none	Trinity_GG_23218_c0_g1_i5,blat.proc3829891.chain_3339	2	STRG.11190.1,Trinity_GG_23218_c0_g1_i1,blat.proc3829891.chain_3336	3
scaffold_20	starts_in_intron	9730352	9730352	+	asmbl_26048	none	STRG.23503.2,blat.proc3829883.chain_585	2	STRG.23503.1,blat.proc3829883.chain_584	2
scaffold_20	starts_in_intron	7870041	7870041	-	asmbl_26861	none	blat.proc3829899.chain_338	1	STRG.23321.1,blat.proc3829899.chain_339	2
scaffold_2	ends_in_intron	14279018	14279018	+	asmbl_24932,asmbl_24935	none	blat.proc3829871.chain_2541,blat.proc3829871.chain_2545	2	STRG.2425.1,STRG.2425.2,STRG.2425.3,STRG.2425.4,blat.proc3829871.chain_2542,blat.proc3829871.chain_2546	6
scaffold_21	alt_donor	8540650	8540651	-	asmbl_27950,asmbl_27952	none	STRG.24364.2,blat.proc3829899.chain_1396,blat.proc3829899.chain_1398	3	STRG.24364.3,blat.proc3829899.chain_1397	2
scaffold_8	alt_donor	5757281	5757282	+	asmbl_51891	none	STRG.9985.1,Trinity_GG_5559_c0_g1_i1,blat.proc3829875.chain_2487	3	STRG.9985.2	1
scaffold_17	skipped_exon	2681607	2682291	+	asmbl_17809	none	STRG.20051.2,blat.proc3829881.chain_882	2	STRG.20051.1,blat.proc3829881.chain_883,blat.proc3829881.chain_884	3
scaffold_26	alt_donor	2966167	2966168	-	asmbl_34735,asmbl_34736,asmbl_34738,asmbl_34739	none	STRG.27973.3,STRG.27973.4,STRG.27973.5,blat.proc3829901.chain_1235	4	STRG.27973.1,STRG.27973.2,Trinity_GG_32695_c1_g1_i4,blat.proc3829901.chain_1231,blat.proc3829901.chain_1232,blat.proc3829901.chain_1233	6
scaffold_25	alt_acceptor	3627663	3627664	+	asmbl_33434,asmbl_33435	none	STRG.27294.2,STRG.27294.3	2	STRG.27294.1,blat.proc3829885.chain_341,blat.proc3829885.chain_342	3
scaffold_20	alt_donor	1470057	1470058	-	asmbl_26505	none	STRG.22854.1,blat.proc3829897.chain_3657	2	blat.proc3829897.chain_3658	1
scaffold_10	alt_acceptor	14826330	14826331	+	asmbl_4941	none	STRG.13014.3	1	STRG.13014.1,STRG.13014.2,blat.proc3829877.chain_1558	3
scaffold_4	skipped_exon	13076162	13076345	+	asmbl_43113	none	STRG.4945.4	1	STRG.4945.1,STRG.4945.2,STRG.4945.3,blat.proc3829873.chain_1237,blat.proc3829873.chain_1238	5
scaffold_18	alt_acceptor	1391630	1391631	-	asmbl_19657	none	blat.proc3829897.chain_1937	1	STRG.21014.1,STRG.21014.2,blat.proc3829897.chain_1932,blat.proc3829897.chain_1933,blat.proc3829897.chain_1935	5
scaffold_20	alt_acceptor	2389446	2389447	-	asmbl_26567	none	STRG.22957.2,blat.proc3829897.chain_3728	2	STRG.22957.3	1
scaffold_20	alt_acceptor	1754227	1754228	+	asmbl_25606	none	STRG.22907.3,Trinity_GG_12636_c0_g1_i4,blat.proc3829883.chain_58	3	STRG.22907.2,Trinity_GG_12636_c0_g1_i2,blat.proc3829883.chain_55	3
scaffold_25	retained_intron	994851	995030	-	asmbl_34007	none	blat.proc3829901.chain_443	1	STRG.27141.1,blat.proc3829901.chain_442,blat.proc3829901.chain_444	3
scaffold_1	retained_intron	20506233	20506257	-	asmbl_1184	none	STRG.1403.1,Trinity_GG_17787_c1_g1_i4,blat.proc3829887.chain_1298,blat.proc3829887.chain_1299	4	STRG.1403.2	1
scaffold_28	retained_intron	5611858	5612155	-	asmbl_37622	none	STRG.29674.4,Trinity_GG_33655_c0_g1_i6,blat.proc3829901.chain_2811	3	STRG.29674.5,Trinity_GG_33655_c0_g1_i1,blat.proc3829901.chain_2808	3
scaffold_4	spliced_intron	19605273	19605368	-	asmbl_42222	none	STRG.5547.4	1	STRG.5547.3	1
scaffold_18	retained_intron	3105935	3106050	-	asmbl_19784	none	STRG.21138.1,Trinity_GG_28860_c0_g1_i2,blat.proc3829897.chain_2041	3	STRG.21138.2	1
scaffold_24	spliced_intron	10605221	10605501	+	asmbl_32581,asmbl_32582,asmbl_32584	none	STRG.27008.1,STRG.27008.2,blat.proc3829885.chain_139,blat.proc3829885.chain_140,blat.proc3829885.chain_142	5	blat.proc3829885.chain_138	1
scaffold_22	retained_exon	10044842	10045098	-	asmbl_30348	none	STRG.25340.1	1	STRG.25340.3	1
scaffold_4	retained_exon	16434731	16434894	-	asmbl_41919	none	STRG.5221.1	1	STRG.5221.2,STRG.5221.3	2
scaffold_6	alt_acceptor	11482859	11482860	+	asmbl_47268,asmbl_47270	none	STRG.7936.3,blat.proc3829875.chain_301	2	STRG.7936.1,STRG.7936.2,STRG.7936.4,blat.proc3829875.chain_299,blat.proc3829875.chain_300,blat.proc3829875.chain_304	6
scaffold_2	starts_in_intron	10719058	10719058	+	asmbl_24763	none	STRG.2240.2	1	STRG.2240.1,Trinity_GG_1261_c0_g1_i1,Trinity_GG_1261_c0_g1_i5,blat.proc3829871.chain_2344,blat.proc3829871.chain_2345	5
scaffold_15	spliced_intron	12000469	12000658	-	asmbl_15563	none	STRG.18630.1,Trinity_GG_27487_c0_g1_i3,blat.proc3829895.chain_3415	3	Trinity_GG_27487_c0_g1_i4,blat.proc3829895.chain_3419,blat.proc3829895.chain_3421	3
scaffold_20	alt_donor	3712039	3712040	+	asmbl_25689,asmbl_25692	none	STRG.23058.1,blat.proc3829883.chain_153,blat.proc3829883.chain_155	3	STRG.23058.2	1
scaffold_17	alternate_exon	11567735	11567752	+	asmbl_18363	none	Trinity_GG_11317_c0_g1_i1,blat.proc3829881.chain_1479	2	STRG.20693.2	1
scaffold_21	alternate_exon	2484565	2484617	-	asmbl_27492,asmbl_27493	none	STRG.23859.1,STRG.23859.4,Trinity_GG_30317_c0_g1_i2,blat.proc3829899.chain_950	4	STRG.23859.2	1
scaffold_12	spliced_intron	12287220	12287724	-	asmbl_7986,asmbl_7988	none	STRG.15114.1,STRG.15114.2	2	STRG.15114.3,STRG.15114.4,STRG.15114.5,STRG.15114.6,Trinity_GG_25420_c0_g1_i2,blat.proc3829893.chain_3461	6
scaffold_12	ends_in_intron	13049387	13049387	-	asmbl_8043	none	STRG.15177.2	1	STRG.15177.1,blat.proc3829893.chain_3592,blat.proc3829893.chain_3593	3
scaffold_5	alternate_exon	6658149	6658199	+	asmbl_44103	none	STRG.6065.1,Trinity_GG_3292_c0_g1_i2,blat.proc3829873.chain_2176	3	STRG.6065.2	1
scaffold_13	alt_donor	6951099	6951100	-	asmbl_9776,asmbl_9777,asmbl_9778,asmbl_9780	none	STRG.15968.2,STRG.15968.3,STRG.15968.5,STRG.15968.6	4	STRG.15968.4	1
scaffold_340	alt_acceptor	2918	2919	+	asmbl_40963,asmbl_40967	none	STRG.30267.1,blat.proc3829885.chain_3313,blat.proc3829893.chain_1073	3	STRG.30267.2,STRG.30267.3	2
scaffold_14	alternate_exon	6449859	6450069	-	asmbl_13118	none	Trinity_GG_26609_c0_g1_i3,blat.proc3829895.chain_1809	2	STRG.17077.2	1
scaffold_1	ends_in_intron	13520625	13520625	-	asmbl_822	none	blat.proc3829887.chain_762	1	STRG.962.1,STRG.962.2,blat.proc3829887.chain_761,blat.proc3829887.chain_763	4
scaffold_17	alt_donor	14037476	14037477	-	asmbl_19449	none	STRG.20870.3	1	STRG.20870.1,STRG.20870.2	2
scaffold_9	retained_intron	9688546	9688647	-	asmbl_55203,asmbl_55204	none	blat.proc3829891.chain_3513,blat.proc3829891.chain_3514	2	STRG.11334.1,STRG.11334.2,blat.proc3829891.chain_3512,blat.proc3829891.chain_3515	4
scaffold_24	spliced_intron	8736585	8736696	-	asmbl_33085,asmbl_33088,asmbl_33089	none	STRG.26873.1,blat.proc3829901.chain_171,blat.proc3829901.chain_172,blat.proc3829901.chain_173	4	STRG.26873.2,blat.proc3829901.chain_170	2
scaffold_7	retained_intron	11145104	11146469	+	asmbl_51031,asmbl_51032,asmbl_51033,asmbl_51035	none	STRG.9251.2,blat.proc3829875.chain_1725,blat.proc3829875.chain_1727,blat.proc3829875.chain_1729,blat.proc3829875.chain_1730	5	STRG.9251.1,blat.proc3829875.chain_1726,blat.proc3829875.chain_1728	3
scaffold_2	spliced_intron	9322220	9323761	-	asmbl_23399	none	STRG.2176.4	1	STRG.2176.3	1
scaffold_44	alternate_exon	29974	30070	-	asmbl_43689,asmbl_43691	none	STRG.30027.2,STRG.30027.3,blat.proc3829901.chain_3130	3	STRG.30027.1	1
scaffold_28	alt_donor	5257666	5257667	-	asmbl_37604	none	STRG.29659.2,blat.proc3829901.chain_2782	2	STRG.29659.1,blat.proc3829901.chain_2781	2
scaffold_5	alternate_exon	16203094	16203676	-	asmbl_46127	none	STRG.6796.1	1	Trinity_GG_20802_c1_g1_i1,blat.proc3829889.chain_2811	2
scaffold_20	retained_intron	7469036	7469153	-	asmbl_26827,asmbl_26828,asmbl_26830	none	blat.proc3829899.chain_389,blat.proc3829899.chain_391,blat.proc3829899.chain_396	3	STRG.23308.1,blat.proc3829899.chain_394,blat.proc3829899.chain_399,blat.proc3829899.chain_401	4
scaffold_18	retained_intron	9628583	9628642	-	asmbl_20097,asmbl_20099	none	STRG.21568.1,STRG.21568.2	2	blat.proc3829897.chain_2401,blat.proc3829897.chain_2402	2
scaffold_13	alternate_exon	904335	912224	-	asmbl_9344	none	blat.proc3829895.chain_214	1	STRG.15448.2,STRG.15448.7,Trinity_GG_25690_c0_g1_i6,blat.proc3829895.chain_217	4
scaffold_10	alternate_exon	2787348	2788532	-	asmbl_3047	none	STRG.12096.2,Trinity_GG_23730_c0_g1_i2,blat.proc3829893.chain_518	3	Trinity_GG_23730_c0_g2_i1,blat.proc3829893.chain_520	2
scaffold_12	ends_in_intron	2271879	2271879	-	asmbl_7458	none	STRG.14479.3,blat.proc3829893.chain_2798	2	STRG.14479.1,STRG.14479.2,blat.proc3829893.chain_2799	3
scaffold_15	retained_intron	6793556	6793689	-	asmbl_15273	none	STRG.18288.1,blat.proc3829895.chain_3046	2	STRG.18288.3	1
scaffold_2	skipped_exon	14751245	14752836	+	asmbl_25006	none	STRG.2473.2,blat.proc3829871.chain_2634	2	STRG.2473.1,blat.proc3829871.chain_2635	2
scaffold_6	alt_acceptor	17835558	17835559	-	asmbl_49139	none	STRG.8465.1,blat.proc3829891.chain_756	2	STRG.8465.2	1
scaffold_11	spliced_intron	3358702	3358797	+	asmbl_5382,asmbl_5383	none	STRG.13455.1,blat.proc3829877.chain_1937	2	blat.proc3829877.chain_1938	1
scaffold_4	spliced_intron	3231032	3231615	-	asmbl_41158,asmbl_41159	none	STRG.4246.1,blat.proc3829889.chain_340	2	blat.proc3829889.chain_344	1
scaffold_20	alt_acceptor	1952477	1952478	-	asmbl_26550	none	STRG.22923.1	1	blat.proc3829897.chain_3699	1
scaffold_27	starts_in_intron	4943381	4943381	+	asmbl_36289	none	STRG.28914.7	1	STRG.28914.1,STRG.28914.2,STRG.28914.3,STRG.28914.4,STRG.28914.5,STRG.28914.6,blat.proc3829885.chain_2067,blat.proc3829885.chain_2069	8
scaffold_13	alt_donor	909320	909321	-	asmbl_9340,asmbl_9344,asmbl_9345,asmbl_9346	none	STRG.15448.4,STRG.15448.5,STRG.15448.6,blat.proc3829895.chain_214,blat.proc3829895.chain_215	5	STRG.15448.1,STRG.15448.3,blat.proc3829895.chain_212,blat.proc3829895.chain_213	4
scaffold_5	retained_exon	11639338	11639396	+	asmbl_44423	none	STRG.6414.2,Trinity_GG_3493_c0_g1_i1,blat.proc3829873.chain_2554	3	STRG.6414.1,Trinity_GG_3493_c0_g1_i3,blat.proc3829873.chain_2556	3
scaffold_5	retained_intron	9704095	9704464	-	asmbl_45677,asmbl_45679	none	blat.proc3829889.chain_2369,blat.proc3829889.chain_2370,blat.proc3829889.chain_2373	3	blat.proc3829889.chain_2376	1
scaffold_2	alt_acceptor	17973657	17973658	+	asmbl_25243,asmbl_25244	none	blat.proc3829871.chain_2900,blat.proc3829871.chain_2901	2	STRG.2687.1,STRG.2687.2,blat.proc3829871.chain_2902,blat.proc3829871.chain_2903	4
scaffold_4	skipped_exon	6704324	6705681	+	asmbl_42753	none	STRG.4530.3	1	STRG.4530.1,STRG.4530.2,blat.proc3829873.chain_876	3
scaffold_11	alt_acceptor	10978106	10978107	-	asmbl_6983	none	STRG.14050.1,blat.proc3829893.chain_2452	2	STRG.14050.2,blat.proc3829893.chain_2453	2
scaffold_9	retained_intron	12272920	12273070	-	asmbl_55330	none	blat.proc3829891.chain_3666	1	STRG.11540.1,blat.proc3829891.chain_3667	2
scaffold_8	spliced_intron	4350354	4350381	+	asmbl_51829	none	STRG.9913.2	1	STRG.9913.1,Trinity_GG_5531_c0_g1_i1,Trinity_GG_5531_c0_g1_i4	3
scaffold_5	spliced_intron	8554846	8554950	-	asmbl_45605	none	STRG.6186.2	1	STRG.6186.1,blat.proc3829889.chain_2243	2
scaffold_25	alternate_exon	8705013	8705311	+	asmbl_33747	none	Trinity_GG_15273_c0_g1_i6,blat.proc3829885.chain_700	2	blat.proc3829885.chain_692,blat.proc3829885.chain_695	2
scaffold_10	starts_in_intron	13775022	13775022	-	asmbl_3831,asmbl_3832	none	STRG.12967.2,blat.proc3829893.chain_1493	2	STRG.12967.1,blat.proc3829893.chain_1492,blat.proc3829893.chain_1494	3
scaffold_1097	ends_in_intron	2541	2541	+	asmbl_5203	none	blat.proc3829885.chain_3472	1	STRG.30514.1,STRG.30514.3,blat.proc3829885.chain_3504	3
scaffold_8	skipped_exon	4340424	4341174	+	asmbl_51823	none	STRG.9912.1,blat.proc3829875.chain_2389	2	STRG.9912.2,blat.proc3829875.chain_2390	2
scaffold_27	starts_in_intron	2116151	2116151	+	asmbl_36030	none	blat.proc3829885.chain_1735	1	STRG.28688.1	1
scaffold_26	ends_in_intron	10122263	10122263	-	asmbl_35087	none	Trinity_GG_32936_c0_g1_i9,blat.proc3829901.chain_1631	2	STRG.28511.1,STRG.28511.2,Trinity_GG_32936_c0_g1_i11,Trinity_GG_32936_c0_g1_i13,Trinity_GG_32936_c0_g1_i3,Trinity_GG_32936_c0_g1_i5,blat.proc3829901.chain_1633,blat.proc3829901.chain_1634,blat.proc3829901.chain_1635,blat.proc3829901.chain_1636	10
scaffold_14	retained_intron	3161368	3162176	+	asmbl_11881,asmbl_11886,asmbl_11894,asmbl_11896,asmbl_11897	none	blat.proc3829879.chain_1625,blat.proc3829879.chain_1629,blat.proc3829879.chain_1631,blat.proc3829879.chain_1635,blat.proc3829879.chain_1636	5	STRG.16893.1,STRG.16893.2,STRG.16893.3,blat.proc3829879.chain_1626,blat.proc3829879.chain_1632,blat.proc3829879.chain_1633,blat.proc3829879.chain_1639	7
scaffold_8	starts_in_intron	25879	25879	-	asmbl_52675,asmbl_52676	none	STRG.9695.2,blat.proc3829891.chain_1954	2	STRG.9695.1,blat.proc3829891.chain_1953	2
scaffold_22	spliced_intron	6128912	6129087	+	asmbl_29389,asmbl_29390,asmbl_29391,asmbl_29398	none	STRG.24955.3,STRG.24955.4,STRG.24955.7	3	STRG.24955.6	1
scaffold_2	starts_in_intron	7816350	7816350	-	asmbl_23301	none	Trinity_GG_18175_c0_g1_i1,blat.proc3829887.chain_1986	2	STRG.2080.1,Trinity_GG_18175_c0_g1_i3,blat.proc3829887.chain_1987	3
scaffold_6	retained_intron	569633	569861	-	asmbl_47985	none	blat.proc3829889.chain_3092	1	STRG.7107.1,blat.proc3829889.chain_3091	2
scaffold_7	ends_in_intron	13221317	13221317	+	asmbl_51208,asmbl_51213	none	STRG.9423.3,Trinity_GG_5240_c0_g1_i4,blat.proc3829875.chain_1890	3	STRG.9423.1,STRG.9423.2,Trinity_GG_5240_c0_g1_i1,Trinity_GG_5240_c0_g1_i2,blat.proc3829875.chain_1891,blat.proc3829875.chain_1892	6
scaffold_21	alternate_exon	3829609	3831145	-	asmbl_27573,asmbl_27574,asmbl_27575	none	STRG.23959.1,STRG.23959.2,STRG.23959.3,blat.proc3829899.chain_1042,blat.proc3829899.chain_1044,blat.proc3829899.chain_1045	6	STRG.23959.4,blat.proc3829899.chain_1041,blat.proc3829899.chain_1046	3
scaffold_13	alt_donor	88373	88374	+	asmbl_10426,asmbl_10430	none	STRG.15412.1,blat.proc3829879.chain_80,blat.proc3829879.chain_81	3	STRG.15412.4	1
scaffold_11	spliced_intron	857013	857158	+	asmbl_5266,asmbl_5268,asmbl_5269,asmbl_5271	none	STRG.13271.1,STRG.13271.2,STRG.13271.3,blat.proc3829877.chain_1716,blat.proc3829877.chain_1717,blat.proc3829877.chain_1718	6	blat.proc3829877.chain_1719	1
scaffold_5	alt_acceptor	18702452	18702453	-	asmbl_46236	none	STRG.6989.2	1	STRG.6989.1	1
scaffold_2	retained_intron	17237710	17237871	-	asmbl_23733	none	Trinity_GG_18459_c0_g1_i2,blat.proc3829887.chain_2461	2	STRG.2621.1,blat.proc3829887.chain_2462	2
scaffold_5	starts_in_intron	6190323	6190323	+	asmbl_44073	none	blat.proc3829873.chain_2226	1	STRG.6025.1,STRG.6025.2,Trinity_GG_3316_c0_g1_i1,blat.proc3829873.chain_2222,blat.proc3829873.chain_2223,blat.proc3829873.chain_2227	6
scaffold_18	alt_donor	4712220	4712221	-	asmbl_19856	none	STRG.21254.1	1	STRG.21254.2	1
scaffold_3	alt_donor	7591038	7591039	+	asmbl_40129	none	blat.proc3829871.chain_3547	1	STRG.3345.1,blat.proc3829871.chain_3548	2
scaffold_5	alt_donor	14780432	14780433	+	asmbl_44634	none	STRG.6671.1	1	STRG.6671.2,Trinity_GG_3635_c0_g1_i1,blat.proc3829873.chain_2786	3
scaffold_5	retained_exon	13245174	13245236	+	asmbl_44542,asmbl_44544	none	STRG.6561.1,blat.proc3829873.chain_2703,blat.proc3829873.chain_2706	3	STRG.6561.2,STRG.6561.3,blat.proc3829873.chain_2704	3
scaffold_10	alt_acceptor	9465712	9465713	+	asmbl_4659	none	STRG.12681.1,blat.proc3829877.chain_1239	2	STRG.12681.2	1
scaffold_14	alt_donor	15565823	15565824	+	asmbl_12606	none	blat.proc3829879.chain_2468	1	STRG.17784.3	1
scaffold_2	alternate_exon	3493081	3493278	-	asmbl_23006	none	STRG.1782.2	1	STRG.1782.1,blat.proc3829887.chain_1609	2
scaffold_20	alternate_exon	11183247	11184157	-	asmbl_27074	none	STRG.23616.1,blat.proc3829899.chain_629	2	STRG.23616.2,blat.proc3829899.chain_628	2
scaffold_25	skipped_exon	8270367	8270753	-	asmbl_34400	none	Trinity_GG_32494_c0_g1_i2,blat.proc3829901.chain_933	2	STRG.27644.1,Trinity_GG_32494_c0_g1_i1,blat.proc3829901.chain_934	3
scaffold_7	ends_in_intron	1230807	1230807	+	asmbl_50471	none	STRG.8627.4,blat.proc3829875.chain_1056	2	STRG.8627.2,STRG.8627.3,STRG.8627.5,STRG.8627.6,Trinity_GG_4740_c0_g1_i15,Trinity_GG_4740_c0_g1_i16,Trinity_GG_4740_c0_g1_i17,Trinity_GG_4740_c0_g1_i21,blat.proc3829875.chain_1042,blat.proc3829875.chain_1046,blat.proc3829875.chain_1047,blat.proc3829875.chain_1052	12
scaffold_15	alternate_exon	15378555	15378584	-	asmbl_15787	none	STRG.18916.2,blat.proc3829895.chain_3686	2	STRG.18916.1,blat.proc3829895.chain_3685	2
scaffold_1	ends_in_intron	6012834	6012834	+	asmbl_1807	none	Trinity_GG_265_c0_g1_i3,blat.proc3829871.chain_469	2	STRG.402.1,blat.proc3829871.chain_470	2
scaffold_6	alt_acceptor	17443865	17443866	+	asmbl_47692	none	STRG.8437.2	1	STRG.8437.1,Trinity_GG_4610_c0_g1_i1,blat.proc3829875.chain_778	3
scaffold_10	retained_exon	6674432	6674521	-	asmbl_3404,asmbl_3405,asmbl_3406	none	blat.proc3829893.chain_1027,blat.proc3829893.chain_1029,blat.proc3829893.chain_1032	3	blat.proc3829893.chain_1030	1
scaffold_17	retained_intron	5403268	5403361	-	asmbl_18972	none	STRG.20246.1,Trinity_GG_28366_c0_g1_i1	2	STRG.20246.2	1
scaffold_17	starts_in_intron	9984272	9984272	+	asmbl_18267	none	blat.proc3829881.chain_1443	1	blat.proc3829881.chain_1444	1
scaffold_10	spliced_intron	4058608	4058815	-	asmbl_3169,asmbl_3170	none	STRG.12237.2,STRG.12237.3,blat.proc3829893.chain_710	3	STRG.12237.6,STRG.12237.7,blat.proc3829893.chain_707	3
scaffold_6	ends_in_intron	853118	853118	-	asmbl_48018,asmbl_48019,asmbl_48020	none	STRG.7143.3,STRG.7143.4,blat.proc3829889.chain_3139,blat.proc3829889.chain_3140	4	STRG.7143.1	1
scaffold_21	ends_in_intron	2527497	2527497	-	asmbl_27499	none	Trinity_GG_30320_c0_g1_i2,blat.proc3829899.chain_956	2	STRG.23870.1,blat.proc3829899.chain_955,blat.proc3829899.chain_957	3
scaffold_13	retained_intron	2653343	2653584	-	asmbl_9427	none	blat.proc3829895.chain_304	1	STRG.15566.1,blat.proc3829895.chain_303,blat.proc3829895.chain_305	3
scaffold_15	retained_intron	8039747	8042221	-	asmbl_15346	none	STRG.18369.2,Trinity_GG_27305_c0_g1_i2,Trinity_GG_27305_c0_g1_i5,Trinity_GG_27305_c0_g1_i6,blat.proc3829895.chain_3068,blat.proc3829895.chain_3069,blat.proc3829895.chain_3071	7	STRG.18369.1,blat.proc3829895.chain_3067	2
scaffold_21	retained_intron	1657024	1657137	+	asmbl_28373	none	Trinity_GG_13211_c0_g1_i1,blat.proc3829883.chain_991	2	STRG.23807.1,Trinity_GG_13211_c0_g1_i2,Trinity_GG_13211_c0_g1_i3,Trinity_GG_13211_c0_g1_i4,Trinity_GG_13211_c0_g1_i6,Trinity_GG_13211_c0_g1_i7,blat.proc3829883.chain_988,blat.proc3829883.chain_989,blat.proc3829883.chain_990,blat.proc3829883.chain_992,blat.proc3829883.chain_993	11
scaffold_8	starts_in_intron	11976532	11976532	-	asmbl_53176	none	Trinity_GG_22750_c0_g1_i2,blat.proc3829891.chain_2457	2	STRG.10388.2,STRG.10388.3,Trinity_GG_22750_c0_g1_i1,blat.proc3829891.chain_2456	4
scaffold_20	spliced_intron	10856589	10856956	+	asmbl_26150,asmbl_26153	none	STRG.23601.1,Trinity_GG_13067_c0_g1_i3,blat.proc3829883.chain_745,blat.proc3829883.chain_748	4	Trinity_GG_13067_c0_g1_i1,blat.proc3829883.chain_747	2
scaffold_23	alt_donor	9942029	9942030	+	asmbl_31106	none	STRG.26173.3	1	STRG.26173.1	1
scaffold_1	alt_acceptor	6496820	6496821	-	asmbl_371	none	STRG.443.1,blat.proc3829887.chain_246	2	STRG.443.2	1
scaffold_11	retained_intron	257277	257296	+	asmbl_5242	none	Trinity_GG_7288_c0_g1_i1,blat.proc3829877.chain_1771	2	STRG.13247.1	1
scaffold_8	spliced_intron	17944235	17944477	+	asmbl_52513	none	STRG.10698.1,blat.proc3829875.chain_3081	2	blat.proc3829875.chain_3080,blat.proc3829875.chain_3082	2
scaffold_18	alternate_exon	10414911	10415183	-	asmbl_20141	none	STRG.21631.1,blat.proc3829897.chain_2460	2	STRG.21631.2,blat.proc3829897.chain_2461	2
scaffold_2	alt_donor	1318002	1318003	+	asmbl_24202	none	STRG.1604.2	1	STRG.1604.1,blat.proc3829871.chain_1713,blat.proc3829871.chain_1714	3
scaffold_1	alt_donor	4225778	4225779	+	asmbl_1637	none	STRG.249.2,blat.proc3829871.chain_308	2	blat.proc3829871.chain_307	1
scaffold_9	retained_exon	11794281	11794318	-	asmbl_55268,asmbl_55270,asmbl_55272	none	STRG.11484.1,blat.proc3829891.chain_3590,blat.proc3829891.chain_3592,blat.proc3829891.chain_3594	4	STRG.11484.2,STRG.11484.3,blat.proc3829891.chain_3591	3
scaffold_13	starts_in_intron	6609545	6609545	+	asmbl_10934	none	Trinity_GG_8751_c0_g2_i1,blat.proc3829879.chain_617	2	STRG.15936.2,STRG.15936.4,blat.proc3829879.chain_614	3
scaffold_24	retained_exon	9074801	9074842	+	asmbl_32502	none	STRG.26929.2	1	STRG.26929.1,Trinity_GG_14897_c0_g1_i2,Trinity_GG_14897_c0_g1_i6,Trinity_GG_14897_c0_g1_i8,Trinity_GG_14897_c0_g1_i9,blat.proc3829885.chain_71,blat.proc3829885.chain_73,blat.proc3829885.chain_74,blat.proc3829885.chain_77	9
scaffold_20	ends_in_intron	11611260	11611260	-	asmbl_27093,asmbl_27094	none	blat.proc3829899.chain_696,blat.proc3829899.chain_703	2	STRG.23657.1,STRG.23657.2,STRG.23657.3	3
scaffold_9	spliced_intron	8399726	8399808	-	asmbl_55093	none	STRG.11250.1,blat.proc3829891.chain_3406	2	STRG.11250.2	1
scaffold_26	retained_intron	4925304	4925435	-	asmbl_34876	none	STRG.28190.1,Trinity_GG_32785_c0_g1_i1,blat.proc3829901.chain_1379	3	STRG.28190.2	1
scaffold_17	ends_in_intron	13083805	13083805	+	asmbl_18436	none	Trinity_GG_11410_c0_g2_i1	1	STRG.20799.1,STRG.20799.3,blat.proc3829881.chain_1618	3
scaffold_21	alt_donor	8003454	8003455	-	asmbl_27898	none	STRG.24325.1,blat.proc3829899.chain_1424	2	STRG.24325.2,blat.proc3829899.chain_1426	2
scaffold_20	spliced_intron	10384363	10384667	+	asmbl_26107,asmbl_26109,asmbl_26114	none	STRG.23569.1,STRG.23569.2,Trinity_GG_12979_c0_g1_i2,Trinity_GG_12979_c0_g1_i6,blat.proc3829883.chain_591,blat.proc3829883.chain_594	6	blat.proc3829883.chain_590	1
scaffold_1	skipped_exon	19695030	19696372	-	asmbl_1151,asmbl_1152	none	STRG.1356.2,blat.proc3829887.chain_1248	2	STRG.1356.1,blat.proc3829887.chain_1249	2
scaffold_7	spliced_intron	13198531	13198748	-	asmbl_50111,asmbl_50112,asmbl_50114,asmbl_50115	none	STRG.9418.1,STRG.9418.3,blat.proc3829891.chain_1691,blat.proc3829891.chain_1692,blat.proc3829891.chain_1697	5	blat.proc3829891.chain_1694,blat.proc3829891.chain_1695,blat.proc3829891.chain_1698	3
scaffold_11	retained_exon	3025502	3025890	+	asmbl_5356	none	STRG.13420.2,blat.proc3829877.chain_1818	2	STRG.13420.1,STRG.13420.3,blat.proc3829877.chain_1819	3
scaffold_23	alt_acceptor	8204485	8204486	+	asmbl_31065	none	STRG.26112.2	1	STRG.26112.1,blat.proc3829883.chain_2936,blat.proc3829883.chain_2937,blat.proc3829883.chain_2938	4
scaffold_2	spliced_intron	11668002	11668168	+	asmbl_24800	none	STRG.2278.1,blat.proc3829871.chain_2384	2	blat.proc3829871.chain_2382	1
scaffold_5	retained_exon	5047196	5047310	+	asmbl_43994	none	STRG.5951.2	1	STRG.5951.1,blat.proc3829873.chain_2107	2
scaffold_6	spliced_intron	13944744	13944958	+	asmbl_47488	none	STRG.8140.3	1	STRG.8140.1,STRG.8140.2,Trinity_GG_4452_c1_g1_i1,blat.proc3829875.chain_538	4
scaffold_14	alt_acceptor	11139591	11139592	-	asmbl_13433	none	blat.proc3829895.chain_2148	1	STRG.17433.2,blat.proc3829895.chain_2146	2
scaffold_15	alt_acceptor	6961012	6961013	+	asmbl_14212,asmbl_14213	none	STRG.18295.1,STRG.18295.2	2	blat.proc3829879.chain_2933	1
scaffold_12	alt_acceptor	12064812	12064813	+	asmbl_8940	none	STRG.15106.2	1	STRG.15106.1,blat.proc3829877.chain_3566	2
scaffold_19	retained_exon	3557631	3557817	+	asmbl_22125,asmbl_22126,asmbl_22127,asmbl_22128	none	STRG.22033.1,STRG.22033.3,STRG.22033.4	3	STRG.22033.2	1
scaffold_15	alt_acceptor	13982374	13982375	-	asmbl_15710,asmbl_15711	none	STRG.18822.2,Trinity_GG_27579_c0_g1_i2,blat.proc3829895.chain_3571	3	blat.proc3829895.chain_3570	1
scaffold_2	alternate_exon	19279681	19279914	-	asmbl_23874	none	STRG.2793.1	1	STRG.2793.3,blat.proc3829887.chain_2627	2
scaffold_9	ends_in_intron	571526	571526	+	asmbl_53751	none	STRG.10779.7	1	STRG.10779.1	1
scaffold_1	skipped_exon	849299	850633	+	asmbl_1419	none	STRG.41.3	1	STRG.41.4	1
scaffold_16	starts_in_intron	136730	136730	-	asmbl_16001	none	Trinity_GG_27677_c0_g1_i1,blat.proc3829897.chain_8	2	STRG.18991.1,Trinity_GG_27677_c0_g1_i2,blat.proc3829897.chain_7	3
scaffold_1	alt_acceptor	14355864	14355865	-	asmbl_905	none	blat.proc3829887.chain_906	1	blat.proc3829887.chain_907,blat.proc3829887.chain_909	2
scaffold_14	skipped_exon	3159205	3159866	+	asmbl_11882,asmbl_11893	none	Trinity_GG_9302_c0_g1_i11,blat.proc3829879.chain_1627,blat.proc3829879.chain_1634	3	STRG.16893.1,STRG.16893.2,STRG.16893.3,blat.proc3829879.chain_1625,blat.proc3829879.chain_1626,blat.proc3829879.chain_1628,blat.proc3829879.chain_1629,blat.proc3829879.chain_1630,blat.proc3829879.chain_1631,blat.proc3829879.chain_1632,blat.proc3829879.chain_1633,blat.proc3829879.chain_1635,blat.proc3829879.chain_1636,blat.proc3829879.chain_1637,blat.proc3829879.chain_1638,blat.proc3829879.chain_1639,blat.proc3829879.chain_1640	17
scaffold_5	starts_in_intron	15643204	15643204	-	asmbl_46096	none	STRG.6746.1	1	STRG.6746.2	1
scaffold_20	starts_in_intron	1716148	1716148	-	asmbl_26536	none	STRG.22900.1,blat.proc3829897.chain_3652	2	blat.proc3829897.chain_3653	1
scaffold_6	alt_donor	2863166	2863167	+	asmbl_46725	none	STRG.7272.2	1	STRG.7272.1	1
scaffold_6	alternate_exon	12115545	12116670	+	asmbl_47311	none	STRG.7978.2,blat.proc3829875.chain_358	2	STRG.7978.3,Trinity_GG_4362_c0_g1_i5,blat.proc3829875.chain_359	3
scaffold_15	ends_in_intron	10648281	10648281	-	asmbl_15460	none	Trinity_GG_27436_c0_g2_i1,blat.proc3829895.chain_3323	2	STRG.18545.1,STRG.18545.2,STRG.18545.3,blat.proc3829895.chain_3320,blat.proc3829895.chain_3321	5
scaffold_10	retained_intron	2752450	2753447	+	asmbl_4285,asmbl_4287	none	STRG.12085.1,Trinity_GG_6698_c0_g1_i3,blat.proc3829877.chain_745,blat.proc3829877.chain_747	4	blat.proc3829877.chain_746	1
scaffold_9	spliced_intron	11842492	11842644	-	asmbl_55293,asmbl_55294,asmbl_55296,asmbl_55299	none	STRG.11491.1,blat.proc3829891.chain_3619,blat.proc3829891.chain_3623,blat.proc3829891.chain_3624,blat.proc3829891.chain_3625,blat.proc3829891.chain_3626	6	blat.proc3829891.chain_3620,blat.proc3829891.chain_3622	2
scaffold_16	retained_intron	9145719	9145955	+	asmbl_17259,asmbl_17262	none	STRG.19502.3,blat.proc3829881.chain_392	2	STRG.19502.1,blat.proc3829881.chain_393,blat.proc3829881.chain_396,blat.proc3829881.chain_397	4
scaffold_4	skipped_exon	12710958	12711630	+	asmbl_43072	none	STRG.4912.1,blat.proc3829873.chain_1201	2	blat.proc3829873.chain_1195	1
scaffold_2	retained_intron	7240923	7241276	+	asmbl_24585,asmbl_24589	none	blat.proc3829871.chain_2164,blat.proc3829871.chain_2169	2	STRG.2061.1,blat.proc3829871.chain_2165,blat.proc3829871.chain_2166,blat.proc3829871.chain_2168,blat.proc3829871.chain_2170,blat.proc3829871.chain_2171,blat.proc3829871.chain_2172	7
scaffold_16	alt_acceptor	8591295	8591296	+	asmbl_17209,asmbl_17214,asmbl_17218,asmbl_17221	none	STRG.19477.1,STRG.19477.3,blat.proc3829881.chain_354,blat.proc3829881.chain_356,blat.proc3829881.chain_359	5	STRG.19477.7,STRG.19477.8,STRG.19477.9,blat.proc3829881.chain_353	4
scaffold_21	spliced_intron	7367552	7367674	-	asmbl_27823,asmbl_27824,asmbl_27825	none	STRG.24244.1,STRG.24244.2,blat.proc3829899.chain_1314,blat.proc3829899.chain_1316,blat.proc3829899.chain_1317	5	blat.proc3829899.chain_1315	1
scaffold_23	spliced_intron	7686588	7687381	+	asmbl_31007,asmbl_31013	none	STRG.26063.5,STRG.26063.7,Trinity_GG_14406_c0_g1_i4,blat.proc3829883.chain_2978	4	STRG.26063.3,Trinity_GG_14406_c0_g1_i1,Trinity_GG_14406_c0_g1_i5,blat.proc3829883.chain_2976,blat.proc3829883.chain_2979	5
scaffold_4	alt_acceptor	6188962	6188963	-	asmbl_41401,asmbl_41403	none	STRG.4487.1,STRG.4487.3,Trinity_GG_19491_c0_g1_i3,blat.proc3829889.chain_542	4	STRG.4487.2,Trinity_GG_19491_c0_g1_i1,blat.proc3829889.chain_541,blat.proc3829889.chain_543	4
scaffold_4	skipped_exon	15355395	15356747	+	asmbl_43279	none	STRG.5127.2,blat.proc3829873.chain_1471	2	STRG.5127.3	1
scaffold_11	spliced_intron	2061501	2061594	+	asmbl_5314	none	STRG.13352.3	1	STRG.13352.2,Trinity_GG_7338_c0_g1_i6,blat.proc3829877.chain_1843,blat.proc3829877.chain_1844,blat.proc3829877.chain_1846	5
scaffold_27	spliced_intron	4186686	4186765	+	asmbl_36220	none	STRG.28856.1,blat.proc3829885.chain_1925	2	blat.proc3829885.chain_1924	1
scaffold_5	spliced_intron	3935999	3936105	+	asmbl_43925	none	blat.proc3829873.chain_2029	1	STRG.5856.1,Trinity_GG_3221_c0_g1_i3,blat.proc3829873.chain_2028	3
scaffold_23	starts_in_intron	6690362	6690362	+	asmbl_30942	none	Trinity_GG_14326_c1_g2_i1,blat.proc3829883.chain_2851	2	Trinity_GG_14326_c1_g1_i5,Trinity_GG_14326_c1_g1_i8,blat.proc3829883.chain_2847,blat.proc3829883.chain_2848,blat.proc3829883.chain_2849	5
scaffold_4	starts_in_intron	5236590	5236590	-	asmbl_41316	none	Trinity_GG_19485_c0_g1_i2,blat.proc3829889.chain_525	2	STRG.4415.2,blat.proc3829889.chain_526	2
scaffold_21	ends_in_intron	525723	525723	+	asmbl_28296	none	Trinity_GG_13127_c2_g1_i1,blat.proc3829883.chain_859	2	STRG.23731.1,Trinity_GG_13127_c0_g1_i1,blat.proc3829883.chain_856,blat.proc3829883.chain_857	4
scaffold_7	spliced_intron	13546792	13546895	+	asmbl_51240	none	STRG.9465.1,blat.proc3829875.chain_1929	2	blat.proc3829875.chain_1926,blat.proc3829875.chain_1928	2
scaffold_9	alternate_exon	12630717	12631059	+	asmbl_54431	none	STRG.11574.3	1	STRG.11574.1,STRG.11574.2,Trinity_GG_6469_c0_g1_i5,Trinity_GG_6469_c0_g1_i6,Trinity_GG_6469_c0_g1_i8,blat.proc3829877.chain_353,blat.proc3829877.chain_355,blat.proc3829877.chain_357	8
scaffold_16	alternate_exon	947738	947795	-	asmbl_16093	none	Trinity_GG_27711_c0_g1_i1,blat.proc3829897.chain_102	2	STRG.19059.1,Trinity_GG_27711_c0_g1_i2,blat.proc3829897.chain_101	3
scaffold_5	alt_acceptor	16938860	16938861	-	asmbl_46162,asmbl_46164	none	STRG.6865.1,blat.proc3829889.chain_2910,blat.proc3829889.chain_2911	3	blat.proc3829889.chain_2909	1
scaffold_1	alt_donor	13885292	13885293	+	asmbl_2304,asmbl_2306	none	STRG.994.2,blat.proc3829871.chain_1083,blat.proc3829871.chain_1087	3	STRG.994.1,blat.proc3829871.chain_1082,blat.proc3829871.chain_1085	3
scaffold_20	alternate_exon	1950947	1952219	-	asmbl_26550	none	STRG.22923.1	1	STRG.22923.2	1
scaffold_6	spliced_intron	573670	573950	+	asmbl_46617	none	Trinity_GG_3890_c0_g1_i3,blat.proc3829873.chain_3208	2	STRG.7105.1,Trinity_GG_3890_c0_g1_i1,blat.proc3829873.chain_3209	3
scaffold_12	alt_acceptor	977197	977198	-	asmbl_7422,asmbl_7424	none	STRG.14425.1,STRG.14425.4,blat.proc3829893.chain_2839	3	STRG.14425.3,blat.proc3829893.chain_2840	2
scaffold_8	ends_in_intron	8971396	8971396	-	asmbl_52979	none	Trinity_GG_22678_c0_g1_i2,blat.proc3829891.chain_2310	2	STRG.10140.1,STRG.10140.2,blat.proc3829891.chain_2309,blat.proc3829891.chain_2311,blat.proc3829891.chain_2312	5
scaffold_15	spliced_intron	4964556	4964665	+	asmbl_14123,asmbl_14125,asmbl_14127	none	STRG.18193.3,blat.proc3829879.chain_2759,blat.proc3829879.chain_2763	3	STRG.18193.4	1
scaffold_9	spliced_intron	13640033	13640444	+	asmbl_54490	none	STRG.11641.2,blat.proc3829877.chain_424	2	STRG.11641.1,Trinity_GG_6515_c0_g1_i3,Trinity_GG_6515_c1_g1_i2,blat.proc3829877.chain_423,blat.proc3829877.chain_425	5
scaffold_6	ends_in_intron	8451694	8451694	+	asmbl_47060	none	blat.proc3829875.chain_33	1	STRG.7707.1,blat.proc3829875.chain_34	2
scaffold_28	retained_exon	9268985	9269134	+	asmbl_38474	none	STRG.29948.2	1	STRG.29948.1,Trinity_GG_16535_c0_g1_i2,blat.proc3829885.chain_2951	3
scaffold_1	retained_intron	12338031	12338206	-	asmbl_711,asmbl_715,asmbl_716,asmbl_718	none	blat.proc3829887.chain_734,blat.proc3829887.chain_735,blat.proc3829887.chain_737,blat.proc3829887.chain_743	4	blat.proc3829887.chain_740,blat.proc3829887.chain_744	2
scaffold_22	spliced_intron	5922960	5923153	+	asmbl_29361	none	STRG.24922.1,Trinity_GG_13792_c0_g1_i1,blat.proc3829883.chain_1977	3	STRG.24922.2,Trinity_GG_13792_c0_g1_i3,blat.proc3829883.chain_1978,blat.proc3829883.chain_1979	4
scaffold_24	alternate_exon	9952700	9953067	-	asmbl_33150	none	Trinity_GG_32087_c0_g1_i5	1	STRG.26947.1,STRG.26947.3,STRG.26947.4,STRG.26947.8,blat.proc3829901.chain_248,blat.proc3829901.chain_249,blat.proc3829901.chain_250	7
scaffold_12	spliced_intron	12291136	12292234	-	asmbl_7988	none	STRG.15114.2	1	STRG.15114.1,STRG.15114.3,Trinity_GG_25420_c0_g1_i5,Trinity_GG_25420_c1_g1_i1,blat.proc3829893.chain_3457,blat.proc3829893.chain_3462	6
scaffold_1	alt_acceptor	12410982	12410983	+	asmbl_2197	none	STRG.853.2	1	STRG.853.1,Trinity_GG_524_c0_g1_i2,blat.proc3829871.chain_943	3
scaffold_25	spliced_intron	6525745	6525968	-	asmbl_34337	none	blat.proc3829901.chain_848	1	STRG.27518.1	1
scaffold_10	ends_in_intron	13783545	13783545	+	asmbl_4896	none	STRG.12969.3	1	STRG.12969.1,STRG.12969.2	2
scaffold_12	alt_donor	13403502	13403503	-	asmbl_8074,asmbl_8080	none	STRG.15208.3,blat.proc3829893.chain_3626	2	Trinity_GG_25519_c0_g1_i2,blat.proc3829893.chain_3624	2
scaffold_1	alt_donor	19006302	19006303	+	asmbl_2560,asmbl_2561	none	STRG.1322.2,STRG.1322.3	2	STRG.1322.1	1
scaffold_2	retained_exon	1302081	1302135	+	asmbl_24199	none	STRG.1611.3,Trinity_GG_927_c0_g1_i2,blat.proc3829871.chain_1708	3	STRG.1611.1,Trinity_GG_927_c0_g1_i1,blat.proc3829871.chain_1707	3
scaffold_8	retained_intron	7483397	7483530	-	asmbl_52905	none	blat.proc3829891.chain_2150	1	STRG.10067.1,blat.proc3829891.chain_2151	2
scaffold_11	ends_in_intron	1287910	1287910	-	asmbl_6397	none	blat.proc3829893.chain_1750	1	STRG.13311.1,blat.proc3829893.chain_1749	2
scaffold_13	starts_in_intron	7193139	7193139	-	asmbl_9821,asmbl_9828	none	blat.proc3829895.chain_840,blat.proc3829895.chain_845	2	STRG.16001.1,STRG.16001.2,STRG.16001.3,STRG.16001.4,blat.proc3829895.chain_839,blat.proc3829895.chain_841,blat.proc3829895.chain_842,blat.proc3829895.chain_843,blat.proc3829895.chain_844	9
scaffold_8	retained_exon	6903096	6903207	+	asmbl_51956,asmbl_51958	none	STRG.10042.3,blat.proc3829875.chain_2539	2	STRG.10042.1,STRG.10042.2,blat.proc3829875.chain_2536,blat.proc3829875.chain_2537,blat.proc3829875.chain_2541	5
scaffold_17	spliced_intron	9029724	9030391	-	asmbl_19186,asmbl_19189,asmbl_19190,asmbl_19191	none	STRG.20520.1,STRG.20520.2,STRG.20520.5,STRG.20520.6,blat.proc3829897.chain_1455	5	Trinity_GG_28534_c0_g1_i3,blat.proc3829897.chain_1456	2
scaffold_42	alt_acceptor	26123	26124	+	asmbl_43659	none	STRG.30020.1,blat.proc3829885.chain_3097	2	STRG.30020.2	1
scaffold_1	ends_in_intron	6318633	6318633	-	asmbl_366	none	blat.proc3829887.chain_321	1	STRG.431.1,blat.proc3829887.chain_322,blat.proc3829887.chain_323	3
scaffold_23	alternate_exon	10202329	10202361	-	asmbl_31852	none	STRG.26215.3	1	STRG.26215.1,STRG.26215.2,Trinity_GG_31625_c0_g1_i1,blat.proc3829899.chain_3228,blat.proc3829899.chain_3229	5
scaffold_19	alt_acceptor	13742712	13742713	+	asmbl_22693	none	STRG.22674.1,Trinity_GG_12521_c0_g1_i3,blat.proc3829881.chain_3605	3	STRG.22674.2,Trinity_GG_12521_c0_g1_i2,blat.proc3829881.chain_3606	3
scaffold_6	ends_in_intron	880277	880277	-	asmbl_48030	none	STRG.7145.2	1	STRG.7145.1,blat.proc3829889.chain_3147	2
scaffold_23	alternate_exon	5616090	5617750	-	asmbl_31644,asmbl_31650	none	STRG.25917.4,Trinity_GG_31507_c0_g2_i3,blat.proc3829899.chain_3027	3	Trinity_GG_31507_c0_g1_i1,blat.proc3829899.chain_3023	2
scaffold_1	starts_in_intron	2743153	2743153	-	asmbl_129	none	STRG.173.2,blat.proc3829887.chain_59	2	STRG.173.1,STRG.173.3,STRG.173.4,blat.proc3829887.chain_55,blat.proc3829887.chain_56	5
scaffold_3	alternate_exon	6064346	6065413	-	asmbl_38847	none	STRG.3254.3,blat.proc3829887.chain_3029	2	STRG.3254.1,STRG.3254.2,blat.proc3829887.chain_3022,blat.proc3829887.chain_3026	4
scaffold_13	alt_acceptor	3820301	3820302	-	asmbl_9552	none	STRG.15696.2	1	STRG.15696.3,blat.proc3829895.chain_451	2
scaffold_20	retained_exon	9517588	9517614	+	asmbl_26015	none	STRG.23476.2,blat.proc3829883.chain_560	2	STRG.23476.1,blat.proc3829883.chain_559	2
scaffold_8	spliced_intron	3615643	3615886	+	asmbl_51774	none	STRG.9854.2,blat.proc3829875.chain_2279	2	STRG.9854.1,blat.proc3829875.chain_2278	2
scaffold_8	alt_donor	9126259	9126260	-	asmbl_53003,asmbl_53005,asmbl_53008	none	STRG.10161.1,STRG.10161.3,blat.proc3829891.chain_2336	3	STRG.10161.2,STRG.10161.4,blat.proc3829891.chain_2335	3
scaffold_8	retained_intron	18442849	18443312	-	asmbl_53555	none	blat.proc3829891.chain_2938	1	STRG.10739.1,blat.proc3829891.chain_2937	2
scaffold_6	retained_intron	8636212	8636466	-	asmbl_48509	none	STRG.7735.2,Trinity_GG_21380_c0_g1_i3,blat.proc3829889.chain_3747	3	STRG.7735.1,Trinity_GG_21380_c0_g1_i4,blat.proc3829889.chain_3748	3
scaffold_12	starts_in_intron	9987427	9987427	-	asmbl_7837	none	STRG.14957.1,blat.proc3829893.chain_3343	2	STRG.14957.3,blat.proc3829893.chain_3344	2
scaffold_7	alt_acceptor	18347452	18347453	-	asmbl_50280	none	STRG.9657.3,blat.proc3829891.chain_1920	2	STRG.9657.1,STRG.9657.2,blat.proc3829891.chain_1919	3
scaffold_11	alt_acceptor	3497356	3497357	+	asmbl_5400	none	STRG.13472.4	1	STRG.13472.2,blat.proc3829877.chain_1902	2
scaffold_26	spliced_intron	4441929	4442021	+	asmbl_35429,asmbl_35430	none	STRG.28132.1,blat.proc3829885.chain_1079,blat.proc3829885.chain_1080	3	STRG.28132.2,Trinity_GG_15511_c0_g1_i1,blat.proc3829885.chain_1078	3
scaffold_12	retained_intron	12285468	12285562	-	asmbl_7984	none	STRG.15111.2	1	STRG.15111.3	1
scaffold_8	alternate_exon	14404876	14404915	-	asmbl_53319	none	STRG.10520.2	1	STRG.10520.1,blat.proc3829891.chain_2543,blat.proc3829891.chain_2544	3
scaffold_17	alt_acceptor	10123263	10123264	+	asmbl_18304,asmbl_18305	none	STRG.20619.1,STRG.20619.3	2	STRG.20619.2	1
scaffold_27	retained_intron	160376	160481	-	asmbl_36606	none	STRG.28532.2,blat.proc3829901.chain_1696	2	STRG.28532.1,Trinity_GG_32958_c0_g1_i1,blat.proc3829901.chain_1697	3
scaffold_7	retained_intron	11144044	11145072	+	asmbl_51031,asmbl_51035	none	STRG.9251.2,blat.proc3829875.chain_1729,blat.proc3829875.chain_1730	3	STRG.9251.1,blat.proc3829875.chain_1725,blat.proc3829875.chain_1726,blat.proc3829875.chain_1727,blat.proc3829875.chain_1728	5
scaffold_18	spliced_intron	5730383	5730838	+	asmbl_20630	none	STRG.21313.2,Trinity_GG_11744_c0_g1_i3,blat.proc3829881.chain_2237	3	STRG.21313.1,Trinity_GG_11744_c0_g1_i1,blat.proc3829881.chain_2235	3
scaffold_7	alt_acceptor	8288243	8288244	-	asmbl_49803	none	STRG.9052.1,blat.proc3829891.chain_1311	2	STRG.9052.2,Trinity_GG_22125_c0_g1_i2,blat.proc3829891.chain_1312	3
scaffold_10	retained_intron	4715798	4715921	-	asmbl_3223	none	STRG.12286.3	1	STRG.12286.1,blat.proc3829893.chain_750	2
scaffold_4	starts_in_intron	12340485	12340485	-	asmbl_41641	none	blat.proc3829889.chain_937	1	STRG.4867.1,STRG.4867.2,Trinity_GG_19730_c0_g1_i3,blat.proc3829889.chain_934,blat.proc3829889.chain_936	5
scaffold_5	retained_exon	17192039	17192139	+	asmbl_44804	none	STRG.6883.1	1	STRG.6883.2	1
scaffold_10	retained_intron	13000440	13000630	-	asmbl_3751	none	blat.proc3829893.chain_1395	1	STRG.12900.2,STRG.12900.3,Trinity_GG_24234_c1_g1_i2,blat.proc3829893.chain_1397	4
scaffold_1	spliced_intron	15304128	15304231	+	asmbl_2419,asmbl_2420	none	STRG.1093.1,Trinity_GG_640_c0_g1_i1,Trinity_GG_640_c0_g1_i2,blat.proc3829871.chain_1163,blat.proc3829871.chain_1165	5	Trinity_GG_640_c0_g1_i3,blat.proc3829871.chain_1164	2
scaffold_24	spliced_intron	9121547	9121853	+	asmbl_32517	none	STRG.26917.1,Trinity_GG_14864_c0_g1_i4,blat.proc3829885.chain_20	3	blat.proc3829885.chain_21,blat.proc3829885.chain_23	2
scaffold_9	alternate_exon	16741597	16741705	-	asmbl_55583,asmbl_55587	none	STRG.11811.2,STRG.11811.3,Trinity_GG_23557_c0_g1_i6,blat.proc3829893.chain_219	4	STRG.11811.1,Trinity_GG_23557_c0_g1_i2,blat.proc3829893.chain_220	3
scaffold_3	spliced_intron	7919332	7919535	-	asmbl_38948,asmbl_38949,asmbl_38950,asmbl_38951,asmbl_38952	none	STRG.3375.1,STRG.3375.2,STRG.3375.3,STRG.3375.4,STRG.3375.5,blat.proc3829887.chain_3073	6	blat.proc3829887.chain_3074	1
scaffold_3	spliced_intron	6659645	6660509	+	asmbl_40061,asmbl_40066,asmbl_40068	none	STRG.3290.4,STRG.3290.5,blat.proc3829871.chain_3459,blat.proc3829871.chain_3468	4	STRG.3290.3,Trinity_GG_1861_c0_g1_i1,Trinity_GG_1861_c0_g1_i4,blat.proc3829871.chain_3462,blat.proc3829871.chain_3463	5
scaffold_26	retained_intron	6663635	6663720	+	asmbl_35628	none	STRG.28362.3,Trinity_GG_15670_c0_g1_i1,blat.proc3829885.chain_1355	3	STRG.28362.1,STRG.28362.2,blat.proc3829885.chain_1353	3
scaffold_22	retained_intron	214832	216306	+	asmbl_29114	none	STRG.24661.1,Trinity_GG_13639_c0_g1_i4,blat.proc3829883.chain_1718	3	STRG.24661.6	1
scaffold_7	alt_acceptor	12618433	12618434	+	asmbl_51160	none	STRG.9362.1,blat.proc3829875.chain_1767	2	STRG.9362.2	1
scaffold_9	alternate_exon	4206166	4207808	+	asmbl_53923	none	STRG.11013.3,Trinity_GG_6093_c0_g1_i1,blat.proc3829875.chain_3426	3	STRG.11013.1,blat.proc3829875.chain_3430	2
scaffold_6	alt_acceptor	2536164	2536165	+	asmbl_46710	none	STRG.7248.1	1	STRG.7248.2	1
scaffold_1	alt_acceptor	21931438	21931439	-	asmbl_1227	none	STRG.1472.1	1	STRG.1472.2	1
scaffold_25	alt_donor	666103	666104	+	asmbl_33340	none	STRG.27104.1	1	STRG.27104.2	1
scaffold_10	retained_intron	8894175	8894277	-	asmbl_3531	none	Trinity_GG_24071_c0_g1_i29,blat.proc3829893.chain_1126	2	STRG.12629.1,blat.proc3829893.chain_1128,blat.proc3829893.chain_1129,blat.proc3829893.chain_1130,blat.proc3829893.chain_1132,blat.proc3829893.chain_1133,blat.proc3829893.chain_1134,blat.proc3829893.chain_1135,blat.proc3829893.chain_1136	9
scaffold_14	starts_in_intron	14080915	14080915	-	asmbl_13659	none	STRG.17662.1	1	STRG.17662.2,blat.proc3829895.chain_2414	2
scaffold_11	retained_intron	4744838	4745192	-	asmbl_6600	none	blat.proc3829893.chain_2037	1	STRG.13555.2,blat.proc3829893.chain_2035,blat.proc3829893.chain_2038,blat.proc3829893.chain_2039,blat.proc3829893.chain_2040	5
scaffold_5	alt_donor	10183670	10183671	-	asmbl_45700	none	STRG.6308.1	1	blat.proc3829889.chain_2400	1
scaffold_10	starts_in_intron	3922471	3922471	+	asmbl_4369	none	Trinity_GG_6792_c0_g1_i3,blat.proc3829877.chain_904	2	blat.proc3829877.chain_902,blat.proc3829877.chain_903	2
scaffold_4	spliced_intron	19356141	19356419	-	asmbl_42185	none	STRG.5528.1,blat.proc3829889.chain_1615	2	blat.proc3829889.chain_1609,blat.proc3829889.chain_1612,blat.proc3829889.chain_1613,blat.proc3829889.chain_1617	4
scaffold_25	alt_donor	5607629	5607630	-	asmbl_34248	none	STRG.27441.2	1	STRG.27441.1,Trinity_GG_32369_c0_g1_i1,blat.proc3829901.chain_705	3
scaffold_21	alternate_exon	7935965	7937047	-	asmbl_27890	none	blat.proc3829899.chain_1372	1	Trinity_GG_30562_c0_g1_i1,blat.proc3829899.chain_1373	2
scaffold_12	alt_donor	15263518	15263519	-	asmbl_8198,asmbl_8201,asmbl_8202	none	STRG.15320.2,STRG.15320.3,STRG.15320.4,Trinity_GG_25603_c0_g1_i1,blat.proc3829895.chain_54	5	STRG.15320.1,Trinity_GG_25603_c0_g1_i3,blat.proc3829895.chain_52,blat.proc3829895.chain_53	4
scaffold_21	skipped_exon	2468544	2469885	-	asmbl_27484	none	blat.proc3829899.chain_904	1	STRG.23863.1,STRG.23863.2,STRG.23863.4,blat.proc3829899.chain_898,blat.proc3829899.chain_902,blat.proc3829899.chain_906	6
scaffold_3	skipped_exon	16797210	16800128	-	asmbl_39463	none	STRG.3933.2,blat.proc3829887.chain_3701	2	STRG.3933.1	1
scaffold_27	starts_in_intron	3092282	3092282	-	asmbl_36844	none	blat.proc3829901.chain_1948	1	STRG.28775.1,STRG.28775.3,STRG.28775.4,STRG.28775.5,blat.proc3829901.chain_1946,blat.proc3829901.chain_1947,blat.proc3829901.chain_1951	7
scaffold_8	ends_in_intron	16506794	16506794	-	asmbl_53426	none	blat.proc3829891.chain_2873	1	STRG.10621.1,STRG.10621.3,STRG.10621.4,STRG.10621.5,blat.proc3829891.chain_2859,blat.proc3829891.chain_2860,blat.proc3829891.chain_2862,blat.proc3829891.chain_2864,blat.proc3829891.chain_2865,blat.proc3829891.chain_2869,blat.proc3829891.chain_2871	11
scaffold_3	spliced_intron	13327483	13327589	-	asmbl_39200	none	Trinity_GG_19030_c0_g1_i2,blat.proc3829887.chain_3455	2	STRG.3677.1,STRG.3677.2	2
scaffold_28	alt_acceptor	8330036	8330037	-	asmbl_37786	none	STRG.29879.2,blat.proc3829901.chain_2990	2	STRG.29879.1,blat.proc3829901.chain_2989	2
scaffold_5	ends_in_intron	14262503	14262503	+	asmbl_44581	none	blat.proc3829873.chain_2766	1	STRG.6629.1,STRG.6629.2,blat.proc3829873.chain_2764,blat.proc3829873.chain_2765,blat.proc3829873.chain_2767,blat.proc3829873.chain_2769	6
scaffold_7	alternate_exon	7191402	7191643	+	asmbl_50791	none	STRG.8971.1,blat.proc3829875.chain_1417	2	STRG.8971.2,blat.proc3829875.chain_1418	2
scaffold_22	alt_donor	693343	693344	+	asmbl_29177,asmbl_29178	none	STRG.24705.2,STRG.24705.3	2	STRG.24705.1,Trinity_GG_13663_c0_g1_i1,blat.proc3829883.chain_1766	3
scaffold_16	starts_in_intron	8589948	8589948	+	asmbl_17214	none	blat.proc3829881.chain_356	1	STRG.19477.1,STRG.19477.3,STRG.19477.7,STRG.19477.8,blat.proc3829881.chain_353,blat.proc3829881.chain_354,blat.proc3829881.chain_359	7
scaffold_18	ends_in_intron	4727927	4727927	+	asmbl_20581	none	Trinity_GG_11670_c0_g1_i1,blat.proc3829881.chain_2076	2	STRG.21256.1,Trinity_GG_11670_c0_g1_i2,blat.proc3829881.chain_2077	3
scaffold_5	alt_acceptor	1097095	1097096	-	asmbl_45214	none	STRG.5657.1	1	blat.proc3829889.chain_1801	1
scaffold_16	skipped_exon	744159	744656	-	asmbl_16069,asmbl_16072	none	STRG.19044.2,blat.proc3829897.chain_11	2	STRG.19044.1,blat.proc3829897.chain_10,blat.proc3829897.chain_13	3
scaffold_28	alt_acceptor	224146	224147	-	asmbl_37223,asmbl_37224	none	STRG.29227.1,STRG.29227.2	2	STRG.29227.3	1
scaffold_5	spliced_intron	13825214	13825331	-	asmbl_45947	none	STRG.6588.1,Trinity_GG_20720_c0_g1_i1,blat.proc3829889.chain_2668	3	STRG.6588.2	1
scaffold_8	spliced_intron	11853070	11855193	+	asmbl_52269,asmbl_52270,asmbl_52276	none	STRG.10382.3,blat.proc3829875.chain_2968,blat.proc3829875.chain_2975,blat.proc3829875.chain_2979	4	STRG.10382.2,STRG.10382.4,blat.proc3829875.chain_2967,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2976,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978	10
scaffold_9	starts_in_intron	14051928	14051928	+	asmbl_54505	none	blat.proc3829877.chain_373	1	STRG.11665.1,Trinity_GG_6478_c0_g1_i2,blat.proc3829877.chain_374	3
scaffold_2	starts_in_intron	3629625	3629625	+	asmbl_24313,asmbl_24314	none	STRG.1787.2,STRG.1787.3	2	STRG.1787.1,Trinity_GG_982_c0_g1_i6	2
scaffold_15	alt_donor	6958910	6958911	-	asmbl_15291,asmbl_15293	none	STRG.18291.4,blat.proc3829895.chain_3053	2	STRG.18291.1,STRG.18291.2,STRG.18291.3,blat.proc3829895.chain_3051,blat.proc3829895.chain_3052,blat.proc3829895.chain_3054	6
scaffold_13	skipped_exon	8348099	8348676	+	asmbl_11109	none	STRG.16111.2,blat.proc3829879.chain_874	2	STRG.16111.1,blat.proc3829879.chain_873	2
scaffold_19	spliced_intron	8526	8631	+	asmbl_21971	none	STRG.21807.3	1	STRG.21807.2	1
scaffold_23	starts_in_intron	3233487	3233487	-	asmbl_31509	none	blat.proc3829899.chain_2812	1	STRG.25734.1,blat.proc3829899.chain_2811	2
scaffold_16	alternate_exon	11433329	11434268	-	asmbl_16526	none	STRG.19659.1,blat.proc3829897.chain_634	2	STRG.19659.2	1
scaffold_3	alt_acceptor	12063097	12063098	+	asmbl_40347	none	STRG.3627.2	1	STRG.3627.1,STRG.3627.3,Trinity_GG_2023_c0_g1_i1,blat.proc3829873.chain_3	4
scaffold_2	starts_in_intron	3656369	3656369	+	asmbl_24319	none	blat.proc3829871.chain_1829	1	STRG.1789.1,blat.proc3829871.chain_1828	2
scaffold_12	ends_in_intron	15759998	15759998	+	asmbl_9104	none	Trinity_GG_8447_c2_g1_i3,blat.proc3829879.chain_35	2	STRG.15355.2	1
scaffold_22	alt_donor	10040358	10040359	-	asmbl_30346	none	blat.proc3829899.chain_2408	1	STRG.25336.1,blat.proc3829899.chain_2409	2
scaffold_26	retained_exon	5983388	5983402	+	asmbl_35590,asmbl_35591	none	blat.proc3829885.chain_1323,blat.proc3829885.chain_1324	2	STRG.28298.1,Trinity_GG_15650_c0_g1_i4,blat.proc3829885.chain_1321,blat.proc3829885.chain_1325	4
scaffold_10	alternate_exon	17179879	17179980	+	asmbl_5024	none	STRG.13154.2	1	STRG.13154.1	1
scaffold_1	alternate_exon	12051093	12051532	-	asmbl_689,asmbl_690,asmbl_691	none	STRG.819.1,STRG.819.2,STRG.819.3	3	STRG.819.4	1
scaffold_2	ends_in_intron	16403910	16403910	+	asmbl_25173	none	blat.proc3829871.chain_2793	1	STRG.2580.1,blat.proc3829871.chain_2790,blat.proc3829871.chain_2791	3
scaffold_8	alternate_exon	17974177	17974253	-	asmbl_53507	none	STRG.10695.3	1	STRG.10695.2	1
scaffold_3	retained_intron	7919332	7919535	-	asmbl_38953	none	blat.proc3829887.chain_3074	1	STRG.3375.1,STRG.3375.2,STRG.3375.3,STRG.3375.4,STRG.3375.5,blat.proc3829887.chain_3073	6
scaffold_17	ends_in_intron	14626966	14626966	-	asmbl_19487,asmbl_19488	none	blat.proc3829897.chain_1812,blat.proc3829897.chain_1816	2	STRG.20920.2,STRG.20920.3	2
scaffold_2	spliced_intron	4070470	4071066	-	asmbl_23077	none	STRG.1852.2	1	Trinity_GG_18017_c0_g1_i1,blat.proc3829887.chain_1659	2
scaffold_12	retained_intron	14256759	14257074	+	asmbl_9041	none	STRG.15246.2,blat.proc3829877.chain_3699	2	STRG.15246.3	1
scaffold_22	spliced_intron	4189098	4189298	+	asmbl_29262	none	STRG.24817.2,blat.proc3829883.chain_1840	2	STRG.24817.1,blat.proc3829883.chain_1841	2
scaffold_7	ends_in_intron	6223234	6223234	+	asmbl_50741	none	STRG.8911.1,blat.proc3829875.chain_1345	2	STRG.8911.2,blat.proc3829875.chain_1344	2
scaffold_10	retained_intron	3758123	3758321	-	asmbl_3133,asmbl_3134	none	STRG.12200.1,STRG.12200.4	2	STRG.12200.2	1
scaffold_20	alternate_exon	9965476	9965583	-	asmbl_26989	none	STRG.23526.2,blat.proc3829899.chain_552	2	STRG.23526.3,blat.proc3829899.chain_550	2
scaffold_12	alt_donor	10539610	10539611	+	asmbl_8895	none	STRG.15008.2,Trinity_GG_8265_c0_g1_i1,blat.proc3829877.chain_3464	3	STRG.15008.1,Trinity_GG_8265_c0_g1_i2,blat.proc3829877.chain_3465	3
scaffold_13	spliced_intron	9608243	9608361	+	asmbl_11198	none	STRG.16213.1,blat.proc3829879.chain_964,blat.proc3829879.chain_965	3	blat.proc3829879.chain_966	1
scaffold_5	retained_intron	9711452	9711758	+	asmbl_44300	none	blat.proc3829873.chain_2438	1	STRG.6273.2,blat.proc3829873.chain_2439	2
scaffold_3	alt_acceptor	1032794	1032795	+	asmbl_39780	none	STRG.2926.2	1	STRG.2926.1,blat.proc3829871.chain_3092	2
scaffold_8	retained_intron	12193942	12194153	-	asmbl_53184	none	blat.proc3829891.chain_2519	1	STRG.10397.1,blat.proc3829891.chain_2520	2
scaffold_6	retained_intron	12034964	12035191	-	asmbl_48716	none	STRG.7969.2,blat.proc3829891.chain_182	2	STRG.7969.1,blat.proc3829891.chain_183	2
scaffold_11	alt_acceptor	1305199	1305200	-	asmbl_6403	none	blat.proc3829893.chain_1780	1	STRG.13304.1,blat.proc3829893.chain_1781	2
scaffold_2	skipped_exon	10878302	10880126	+	asmbl_24777	none	STRG.2242.2,blat.proc3829871.chain_2373	2	STRG.2242.1,Trinity_GG_1275_c0_g1_i6,blat.proc3829871.chain_2376,blat.proc3829871.chain_2377	4
scaffold_9	alt_donor	14820043	14820044	-	asmbl_55461,asmbl_55465,asmbl_55466,asmbl_55468	none	STRG.11693.1,STRG.11693.2,STRG.11693.7,blat.proc3829893.chain_10,blat.proc3829893.chain_8	5	blat.proc3829893.chain_5	1
scaffold_26	retained_intron	6663772	6663872	+	asmbl_35628	none	STRG.28362.3,Trinity_GG_15670_c0_g1_i1,blat.proc3829885.chain_1355	3	STRG.28362.1,STRG.28362.2,blat.proc3829885.chain_1353	3
scaffold_14	starts_in_intron	210738	210738	-	asmbl_12780	none	Trinity_GG_26362_c0_g2_i1,blat.proc3829895.chain_1401	2	STRG.16702.1,STRG.16702.6,Trinity_GG_26362_c0_g1_i3,blat.proc3829895.chain_1403	4
scaffold_6	spliced_intron	12552240	12553416	-	asmbl_48761	none	STRG.8010.1	1	STRG.8010.2,blat.proc3829891.chain_322	2
scaffold_16	alternate_exon	3706688	3707061	+	asmbl_16940	none	blat.proc3829881.chain_33	1	STRG.19166.2	1
scaffold_18	alt_donor	13634935	13634936	-	asmbl_20205	none	blat.proc3829897.chain_2524	1	STRG.21784.1,blat.proc3829897.chain_2525	2
scaffold_11	retained_intron	14587104	14587452	+	asmbl_6077,asmbl_6079	none	STRG.14246.3,blat.proc3829877.chain_2755	2	STRG.14246.2,blat.proc3829877.chain_2754	2
scaffold_8	retained_intron	7804635	7804749	-	asmbl_52918	none	blat.proc3829891.chain_2146	1	STRG.10090.1,blat.proc3829891.chain_2143,blat.proc3829891.chain_2144,blat.proc3829891.chain_2145,blat.proc3829891.chain_2147	5
scaffold_2	ends_in_intron	14542758	14542758	+	asmbl_24980	none	blat.proc3829871.chain_2556	1	STRG.2454.1,STRG.2454.2	2
scaffold_5	alt_acceptor	4686034	4686035	-	asmbl_45372,asmbl_45377,asmbl_45381	none	STRG.5919.4,blat.proc3829889.chain_2033,blat.proc3829889.chain_2035	3	STRG.5919.1,blat.proc3829889.chain_2027,blat.proc3829889.chain_2028,blat.proc3829889.chain_2029,blat.proc3829889.chain_2030,blat.proc3829889.chain_2032	6
scaffold_21	retained_exon	4100643	4100663	+	asmbl_28521	none	STRG.23984.4	1	STRG.23984.2	1
scaffold_2	alt_donor	8305940	8305941	+	asmbl_24666	none	STRG.2114.1,Trinity_GG_1200_c1_g1_i1,blat.proc3829871.chain_2237	3	STRG.2114.2	1
scaffold_16	alt_acceptor	14655989	14655990	-	asmbl_16672	none	STRG.19848.1,blat.proc3829897.chain_741	2	STRG.19848.2,blat.proc3829897.chain_743	2
scaffold_15	spliced_intron	11728507	11728700	-	asmbl_15547	none	STRG.18620.1	1	STRG.18620.2	1
scaffold_3	starts_in_intron	6661550	6661550	+	asmbl_40073,asmbl_40074	none	STRG.3291.2,STRG.3291.3,blat.proc3829871.chain_3474	3	STRG.3291.1	1
scaffold_13	skipped_exon	2660618	2662993	-	asmbl_9430	none	STRG.15557.1,blat.proc3829895.chain_240	2	blat.proc3829895.chain_237	1
scaffold_25	starts_in_intron	6304783	6304783	+	asmbl_33615	none	Trinity_GG_15123_c2_g1_i1,blat.proc3829885.chain_478	2	STRG.27516.1,blat.proc3829885.chain_464,blat.proc3829885.chain_465,blat.proc3829885.chain_466,blat.proc3829885.chain_467,blat.proc3829885.chain_469,blat.proc3829885.chain_470,blat.proc3829885.chain_471,blat.proc3829885.chain_472,blat.proc3829885.chain_473,blat.proc3829885.chain_474	11
scaffold_5	retained_exon	3772855	3773188	+	asmbl_43901	none	STRG.5834.2,blat.proc3829873.chain_2013	2	STRG.5834.1	1
scaffold_11	retained_intron	4759244	4759351	-	asmbl_6608	none	blat.proc3829893.chain_2023	1	STRG.13565.1,blat.proc3829893.chain_2020,blat.proc3829893.chain_2021,blat.proc3829893.chain_2022	4
scaffold_8	alt_donor	12717269	12717270	+	asmbl_52332	none	STRG.10440.2,blat.proc3829875.chain_2923	2	STRG.10440.1,blat.proc3829875.chain_2922	2
scaffold_13	retained_intron	9535986	9536300	-	asmbl_9991,asmbl_9993	none	STRG.16202.1,STRG.16202.2,blat.proc3829895.chain_990	3	STRG.16202.3,STRG.16202.5,blat.proc3829895.chain_991	3
scaffold_7	retained_intron	8795676	8795757	+	asmbl_50940	none	blat.proc3829875.chain_1556	1	blat.proc3829875.chain_1557	1
scaffold_3	alternate_exon	15779967	15785748	-	asmbl_39397	none	STRG.3856.1,blat.proc3829887.chain_3691	2	STRG.3856.4	1
scaffold_15	starts_in_intron	9872857	9872857	+	asmbl_14373	none	blat.proc3829879.chain_3063	1	STRG.18515.1,blat.proc3829879.chain_3062,blat.proc3829879.chain_3065	3
scaffold_14	alt_donor	2375889	2375890	-	asmbl_12916	none	blat.proc3829895.chain_1581	1	blat.proc3829895.chain_1587	1
scaffold_14	starts_in_intron	149694	149694	-	asmbl_12757	none	STRG.16700.1,blat.proc3829895.chain_1382	2	STRG.16700.2,blat.proc3829895.chain_1383,blat.proc3829895.chain_1384,blat.proc3829895.chain_1385	4
scaffold_7	ends_in_intron	813382	813382	+	asmbl_50448	none	blat.proc3829875.chain_973	1	STRG.8613.1,blat.proc3829875.chain_972,blat.proc3829875.chain_974	3
scaffold_322	retained_intron	608	748	+	asmbl_40919	none	Trinity_GG_16755_c1_g1_i2	1	STRG.30250.1	1
scaffold_5	spliced_intron	11630266	11630481	-	asmbl_45802	none	blat.proc3829889.chain_2529	1	blat.proc3829889.chain_2526,blat.proc3829889.chain_2528	2
scaffold_11	retained_intron	8100269	8100367	+	asmbl_5690,asmbl_5691	none	Trinity_GG_7614_c0_g1_i2,Trinity_GG_7614_c0_g1_i5,blat.proc3829877.chain_2292,blat.proc3829877.chain_2297	4	STRG.13810.1,STRG.13810.2,STRG.13810.3,STRG.13810.4,Trinity_GG_7614_c0_g1_i1,Trinity_GG_7614_c0_g1_i3,Trinity_GG_7614_c0_g1_i4,Trinity_GG_7614_c0_g1_i6,blat.proc3829877.chain_2293,blat.proc3829877.chain_2294,blat.proc3829877.chain_2295,blat.proc3829877.chain_2296	12
scaffold_6	spliced_intron	13919016	13919128	-	asmbl_48894	none	STRG.8132.2,blat.proc3829891.chain_438	2	STRG.8132.1,blat.proc3829891.chain_439,blat.proc3829891.chain_440	3
scaffold_11	spliced_intron	8192814	8192909	-	asmbl_6833	none	STRG.13814.2,Trinity_GG_24748_c0_g1_i1,blat.proc3829893.chain_2275	3	Trinity_GG_24748_c0_g1_i2,blat.proc3829893.chain_2273	2
scaffold_1	spliced_intron	17725231	17725595	+	asmbl_2512	none	STRG.1239.1,Trinity_GG_733_c0_g1_i2,blat.proc3829871.chain_1303	3	STRG.1239.2,Trinity_GG_733_c0_g1_i1,Trinity_GG_733_c0_g1_i3,blat.proc3829871.chain_1301,blat.proc3829871.chain_1302	5
scaffold_9	alternate_exon	3924644	3924762	+	asmbl_53915	none	STRG.11003.1	1	STRG.11003.2	1
scaffold_7	alternate_exon	18398045	18398153	+	asmbl_51410,asmbl_51411	none	STRG.9660.1,STRG.9660.2,blat.proc3829875.chain_2121,blat.proc3829875.chain_2122	4	STRG.9660.3,blat.proc3829875.chain_2120	2
scaffold_15	retained_intron	2823948	2824025	-	asmbl_15062	none	STRG.18059.1	1	STRG.18059.2,Trinity_GG_27178_c0_g1_i1,Trinity_GG_27178_c0_g1_i2,blat.proc3829895.chain_2814	4
scaffold_15	alt_acceptor	11940228	11940229	-	asmbl_15555	none	STRG.18626.2,blat.proc3829895.chain_3337	2	STRG.18626.1,blat.proc3829895.chain_3336	2
scaffold_8	alt_donor	16040333	16040334	-	asmbl_53357	none	STRG.10578.3	1	STRG.10578.2,blat.proc3829891.chain_2727	2
scaffold_6	spliced_intron	13988163	13988265	-	asmbl_48909	none	blat.proc3829891.chain_452	1	STRG.8147.1,blat.proc3829891.chain_453,blat.proc3829891.chain_458	3
scaffold_15	alt_donor	7803904	7803905	-	asmbl_15331	none	STRG.18350.1,Trinity_GG_27330_c1_g1_i1,blat.proc3829895.chain_3109,blat.proc3829895.chain_3111	4	blat.proc3829895.chain_3110	1
scaffold_28	alternate_exon	5755577	5755603	-	asmbl_37645	none	STRG.29690.2	1	STRG.29690.1,Trinity_GG_33662_c0_g1_i1,blat.proc3829901.chain_2819	3
scaffold_21	alt_acceptor	6921894	6921895	-	asmbl_27779,asmbl_27780,asmbl_27781	none	STRG.24206.1,Trinity_GG_30490_c0_g1_i2,blat.proc3829899.chain_1247,blat.proc3829899.chain_1248	4	STRG.24206.2	1
scaffold_28	alt_donor	3839509	3839510	+	asmbl_38188	none	blat.proc3829885.chain_2698	1	STRG.29557.1,blat.proc3829885.chain_2697,blat.proc3829885.chain_2700	3
scaffold_13	retained_exon	7505395	7506114	-	asmbl_9848,asmbl_9850	none	STRG.16034.1,blat.proc3829895.chain_813,blat.proc3829895.chain_822	3	STRG.16034.2,STRG.16034.5,Trinity_GG_26030_c0_g1_i9,blat.proc3829895.chain_820	4
scaffold_2	alt_donor	9297052	9297053	+	asmbl_24716	none	STRG.2177.1,Trinity_GG_1195_c0_g1_i2,blat.proc3829871.chain_2230	3	STRG.2177.2,Trinity_GG_1195_c0_g1_i1,blat.proc3829871.chain_2229	3
scaffold_20	spliced_intron	10384754	10385038	+	asmbl_26107,asmbl_26108,asmbl_26113,asmbl_26114	none	STRG.23569.1,STRG.23569.2,STRG.23569.3,Trinity_GG_12979_c0_g1_i5,Trinity_GG_12979_c0_g1_i6,blat.proc3829883.chain_591,blat.proc3829883.chain_592	7	blat.proc3829883.chain_590	1
scaffold_15	alternate_exon	15353552	15353635	+	asmbl_14707,asmbl_14708	none	Trinity_GG_10368_c0_g1_i7,Trinity_GG_10368_c0_g1_i9,blat.proc3829879.chain_3503,blat.proc3829879.chain_3505	4	STRG.18909.1,STRG.18909.2,blat.proc3829879.chain_3500,blat.proc3829879.chain_3502,blat.proc3829879.chain_3504	5
scaffold_14	ends_in_intron	6291505	6291505	+	asmbl_12044	none	Trinity_GG_9404_c0_g1_i2,blat.proc3829879.chain_1815	2	STRG.17067.1,Trinity_GG_9404_c0_g1_i4,blat.proc3829879.chain_1813,blat.proc3829879.chain_1814	4
scaffold_7	spliced_intron	10543036	10543134	+	asmbl_51010	none	STRG.9221.1,blat.proc3829875.chain_1584	2	blat.proc3829875.chain_1585	1
scaffold_13	starts_in_intron	6334115	6334115	-	asmbl_9740	none	Trinity_GG_25968_c2_g1_i1,blat.proc3829895.chain_688	2	STRG.15909.1,Trinity_GG_25968_c2_g1_i2,blat.proc3829895.chain_689	3
scaffold_2	alt_acceptor	15489628	15489629	+	asmbl_25078,asmbl_25080	none	STRG.2499.3,blat.proc3829871.chain_2699	2	STRG.2499.1,STRG.2499.2,STRG.2499.4,blat.proc3829871.chain_2698,blat.proc3829871.chain_2700	5
scaffold_2	alt_acceptor	18045476	18045477	+	asmbl_25253	none	STRG.2694.1,Trinity_GG_1527_c0_g1_i1	2	STRG.2694.2	1
scaffold_4	alternate_exon	7265423	7265561	+	asmbl_42815,asmbl_42821	none	STRG.4560.6,STRG.4560.7,Trinity_GG_2542_c0_g1_i4,blat.proc3829873.chain_960	4	STRG.4560.2,STRG.4560.4,Trinity_GG_2542_c0_g1_i1,Trinity_GG_2542_c0_g1_i3,blat.proc3829873.chain_958,blat.proc3829873.chain_959	6
scaffold_21	alternate_exon	7812103	7812671	-	asmbl_27871	none	STRG.24304.1,Trinity_GG_30558_c1_g1_i1,blat.proc3829899.chain_1366	3	STRG.24304.3	1
scaffold_13	alt_donor	909428	909429	-	asmbl_9341,asmbl_9342	none	STRG.15448.1,STRG.15448.3,blat.proc3829895.chain_212,blat.proc3829895.chain_213	4	STRG.15448.4,STRG.15448.5,STRG.15448.6,blat.proc3829895.chain_214,blat.proc3829895.chain_215	5
scaffold_24	retained_intron	7721535	7721612	-	asmbl_33040	none	blat.proc3829901.chain_119	1	STRG.26799.1,blat.proc3829901.chain_118	2
scaffold_22	skipped_exon	6902811	6903282	-	asmbl_30110	none	STRG.24992.1	1	STRG.24992.2	1
scaffold_12	starts_in_intron	1987176	1987176	-	asmbl_7452	none	blat.proc3829893.chain_2862	1	STRG.14473.1,blat.proc3829893.chain_2863,blat.proc3829893.chain_2864,blat.proc3829893.chain_2865	4
scaffold_14	starts_in_intron	6447513	6447513	-	asmbl_13119	none	Trinity_GG_26609_c0_g1_i5,blat.proc3829895.chain_1806	2	STRG.17077.1,STRG.17077.2,blat.proc3829895.chain_1808	3
scaffold_19	retained_exon	3670631	3671048	-	asmbl_21324	none	STRG.22034.3,Trinity_GG_29269_c0_g1_i2,blat.proc3829897.chain_2743	3	STRG.22034.1,Trinity_GG_29269_c0_g1_i6,blat.proc3829897.chain_2742,blat.proc3829897.chain_2745	4
scaffold_16	skipped_exon	14188298	14190333	-	asmbl_16619	none	STRG.19804.2,blat.proc3829897.chain_689	2	STRG.19804.1,STRG.19804.3,blat.proc3829897.chain_687	3
scaffold_15	alt_acceptor	15414257	15414258	+	asmbl_14730	none	STRG.18922.3,blat.proc3829879.chain_3553	2	STRG.18922.6,Trinity_GG_10387_c0_g1_i3,blat.proc3829879.chain_3550,blat.proc3829879.chain_3554,blat.proc3829879.chain_3557	5
scaffold_28	ends_in_intron	8678111	8678111	-	asmbl_37806	none	blat.proc3829901.chain_2960	1	STRG.29922.1,blat.proc3829901.chain_2959	2
scaffold_15	alt_acceptor	9483596	9483597	-	asmbl_15402	none	STRG.18456.2,Trinity_GG_27343_c0_g1_i1,blat.proc3829895.chain_3127	3	STRG.18456.1	1
scaffold_22	alt_acceptor	6957795	6957796	-	asmbl_30118,asmbl_30120	none	STRG.25002.3,blat.proc3829899.chain_2086	2	STRG.25002.1,STRG.25002.2,STRG.25002.5,blat.proc3829899.chain_2085	4
scaffold_2	skipped_exon	893116	894302	+	asmbl_24155,asmbl_24161,asmbl_24163	none	STRG.1565.1,blat.proc3829871.chain_1631,blat.proc3829871.chain_1632,blat.proc3829871.chain_1634	4	Trinity_GG_899_c0_g2_i7	1
scaffold_3	ends_in_intron	11329314	11329314	+	asmbl_40298	none	Trinity_GG_1990_c0_g1_i2,blat.proc3829871.chain_3691	2	STRG.3561.1,Trinity_GG_1990_c0_g1_i1,blat.proc3829871.chain_3692	3
scaffold_26	spliced_intron	5501908	5502171	+	asmbl_35534	none	STRG.28242.2,blat.proc3829885.chain_1251	2	STRG.28242.1,blat.proc3829885.chain_1252	2
scaffold_20	retained_intron	11670739	11670885	+	asmbl_26236,asmbl_26237	none	Trinity_GG_13100_c0_g1_i1,Trinity_GG_13100_c0_g1_i5,blat.proc3829883.chain_800,blat.proc3829883.chain_801	4	Trinity_GG_13100_c0_g1_i2,blat.proc3829883.chain_802	2
scaffold_11	skipped_exon	9829435	9831678	+	asmbl_5868,asmbl_5873	none	STRG.13996.2,blat.proc3829877.chain_2508,blat.proc3829877.chain_2512	3	STRG.13996.3,STRG.13996.4,blat.proc3829877.chain_2506	3
scaffold_21	starts_in_intron	4446572	4446572	-	asmbl_27599	none	STRG.23994.1,blat.proc3829899.chain_1052	2	STRG.23994.2,blat.proc3829899.chain_1053	2
scaffold_6	starts_in_intron	13276817	13276817	+	asmbl_47457	none	blat.proc3829875.chain_489	1	STRG.8085.3,Trinity_GG_4436_c0_g1_i6,blat.proc3829875.chain_490,blat.proc3829875.chain_491	4
scaffold_2	retained_intron	18730231	18730319	-	asmbl_23833	none	blat.proc3829887.chain_2584	1	STRG.2751.1,blat.proc3829887.chain_2583	2
scaffold_22	alternate_exon	7884656	7884808	-	asmbl_30196	none	blat.proc3829899.chain_2212	1	blat.proc3829899.chain_2209	1
scaffold_9	alternate_exon	8502430	8502479	-	asmbl_55100	none	STRG.11253.2,Trinity_GG_23242_c0_g1_i2,blat.proc3829891.chain_3394	3	STRG.11253.1,Trinity_GG_23242_c0_g1_i1,blat.proc3829891.chain_3393	3
scaffold_15	retained_intron	15188079	15189128	+	asmbl_14674,asmbl_14680,asmbl_14686,asmbl_14689	none	blat.proc3829879.chain_3472,blat.proc3829879.chain_3478,blat.proc3829879.chain_3480,blat.proc3829879.chain_3485,blat.proc3829879.chain_3486	5	STRG.18906.1,blat.proc3829879.chain_3474,blat.proc3829879.chain_3477,blat.proc3829879.chain_3479,blat.proc3829879.chain_3482,blat.proc3829879.chain_3484	6
scaffold_21	starts_in_intron	460366	460366	-	asmbl_27354	none	blat.proc3829899.chain_777	1	blat.proc3829899.chain_780	1
scaffold_8	retained_intron	18161229	18161474	-	asmbl_53523,asmbl_53524	none	Trinity_GG_22981_c0_g1_i2,Trinity_GG_22981_c0_g1_i6,blat.proc3829891.chain_2907,blat.proc3829891.chain_2909	4	STRG.10720.1,Trinity_GG_22981_c0_g1_i1,Trinity_GG_22981_c0_g1_i8,Trinity_GG_22981_c0_g1_i9,blat.proc3829891.chain_2908,blat.proc3829891.chain_2910,blat.proc3829891.chain_2911,blat.proc3829891.chain_2912,blat.proc3829891.chain_2913	9
scaffold_16	alternate_exon	5958646	5960382	+	asmbl_17044	none	STRG.19319.3	1	STRG.19319.1	1
scaffold_13	alternate_exon	9994183	9999578	-	asmbl_10008,asmbl_10009	none	STRG.16227.1,STRG.16227.2,Trinity_GG_26105_c0_g1_i3,blat.proc3829895.chain_968,blat.proc3829895.chain_969,blat.proc3829895.chain_972	6	STRG.16227.3,blat.proc3829895.chain_971	2
scaffold_16	alternate_exon	3870488	3870581	-	asmbl_16179	none	STRG.19184.2,blat.proc3829897.chain_216	2	STRG.19184.3	1
scaffold_23	spliced_intron	7915714	7915792	-	asmbl_31774,asmbl_31776	none	STRG.26078.1,STRG.26078.2,blat.proc3829899.chain_3204,blat.proc3829899.chain_3207	4	blat.proc3829899.chain_3206	1
scaffold_1	ends_in_intron	15129350	15129350	+	asmbl_2401,asmbl_2402	none	STRG.1085.2,STRG.1085.3,blat.proc3829871.chain_1153	3	STRG.1085.1,blat.proc3829871.chain_1152	2
scaffold_2	retained_intron	15270016	15270269	+	asmbl_25041	none	blat.proc3829871.chain_2529	1	STRG.2481.1,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2536,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	9
scaffold_20	retained_exon	7802015	7802281	-	asmbl_26841	none	STRG.23314.1,blat.proc3829899.chain_368	2	STRG.23314.2	1
scaffold_8	retained_exon	9866264	9866359	+	asmbl_52100,asmbl_52104,asmbl_52106,asmbl_52107,asmbl_52108	none	STRG.10225.4,blat.proc3829875.chain_2691,blat.proc3829875.chain_2693,blat.proc3829875.chain_2694,blat.proc3829875.chain_2695	5	blat.proc3829875.chain_2692,blat.proc3829875.chain_2697	2
scaffold_13	alt_acceptor	4378680	4378681	+	asmbl_10768,asmbl_10770	none	STRG.15749.3,blat.proc3829879.chain_404	2	STRG.15749.1,STRG.15749.2	2
scaffold_26	alternate_exon	3266749	3266830	+	asmbl_35301	none	STRG.27995.3	1	STRG.27995.2,blat.proc3829885.chain_957,blat.proc3829885.chain_958	3
scaffold_6	starts_in_intron	13202047	13202047	+	asmbl_47432	none	Trinity_GG_4442_c0_g1_i2,blat.proc3829875.chain_519	2	STRG.8074.1,Trinity_GG_4442_c0_g1_i3,blat.proc3829875.chain_515,blat.proc3829875.chain_516	4
scaffold_27	alt_donor	1550393	1550394	+	asmbl_35982	none	Trinity_GG_15852_c0_g1_i5,blat.proc3829885.chain_1670	2	STRG.28623.1,STRG.28623.2,Trinity_GG_15852_c0_g1_i3,blat.proc3829885.chain_1669	4
scaffold_15	alt_acceptor	165822	165823	+	asmbl_13888	none	STRG.17858.1	1	STRG.17858.2	1
scaffold_6	retained_intron	2758883	2758962	+	asmbl_46717	none	STRG.7264.6,Trinity_GG_3999_c0_g1_i2	2	STRG.7264.2	1
scaffold_23	retained_intron	3510274	3510858	-	asmbl_31521	none	STRG.25754.1,Trinity_GG_31429_c0_g1_i4,blat.proc3829899.chain_2892,blat.proc3829899.chain_2893	4	STRG.25754.2,blat.proc3829899.chain_2895	2
scaffold_14	spliced_intron	6553331	6553641	-	asmbl_13123	none	STRG.17088.1	1	STRG.17088.2	1
scaffold_9	alt_donor	10271843	10271844	+	asmbl_54266	none	STRG.11366.1,blat.proc3829877.chain_140	2	STRG.11366.2	1
scaffold_10	retained_intron	13282361	13283064	-	asmbl_3769	none	STRG.12910.1,Trinity_GG_24247_c4_g1_i1,Trinity_GG_24247_c5_g1_i1,blat.proc3829893.chain_1437,blat.proc3829893.chain_1440,blat.proc3829893.chain_1441	6	STRG.12910.3	1
scaffold_14	retained_intron	2940933	2941376	-	asmbl_12973,asmbl_12976	none	STRG.16884.2,Trinity_GG_26482_c0_g1_i4,blat.proc3829895.chain_1609	3	STRG.16884.1,STRG.16884.3,blat.proc3829895.chain_1610,blat.proc3829895.chain_1611	4
scaffold_17	alternate_exon	6000826	6001133	+	asmbl_17965,asmbl_17966	none	STRG.20273.2,STRG.20273.4	2	STRG.20273.1,blat.proc3829881.chain_1089	2
scaffold_15	retained_exon	6883099	6883630	-	asmbl_15276	none	STRG.18290.3,Trinity_GG_27246_c0_g1_i5,blat.proc3829895.chain_2935	3	STRG.18290.1,STRG.18290.5,STRG.18290.6,blat.proc3829895.chain_2937,blat.proc3829895.chain_2939,blat.proc3829895.chain_2942	6
scaffold_22	alt_acceptor	10896639	10896640	-	asmbl_30399	none	STRG.25411.1,blat.proc3829899.chain_2452	2	STRG.25411.2,STRG.25411.3,blat.proc3829899.chain_2451	3
scaffold_13	alternate_exon	2659112	2659140	-	asmbl_9433	none	blat.proc3829895.chain_236	1	STRG.15557.1,blat.proc3829895.chain_237,blat.proc3829895.chain_240	3
scaffold_13	skipped_exon	4601442	4602712	-	asmbl_9605	none	blat.proc3829895.chain_533	1	STRG.15781.1	1
scaffold_16	retained_exon	442822	442866	-	asmbl_16042	none	blat.proc3829897.chain_32	1	STRG.19039.1,STRG.19039.4	2
scaffold_1	starts_in_intron	12328104	12328104	+	asmbl_2181	none	Trinity_GG_475_c0_g1_i1,blat.proc3829871.chain_840	2	STRG.840.1,STRG.840.3,blat.proc3829871.chain_839	3
scaffold_13	retained_intron	8721343	8721448	+	asmbl_11130	none	STRG.16128.2,Trinity_GG_8837_c0_g2_i1,blat.proc3829879.chain_806	3	STRG.16128.1,Trinity_GG_8837_c0_g1_i1,blat.proc3829879.chain_805	3
scaffold_2	spliced_intron	891608	892306	+	asmbl_24158,asmbl_24160,asmbl_24161	none	STRG.1565.2,STRG.1565.3,blat.proc3829871.chain_1632,blat.proc3829871.chain_1636	4	STRG.1565.1,STRG.1565.4,Trinity_GG_899_c0_g1_i1,Trinity_GG_899_c0_g1_i2,blat.proc3829871.chain_1629,blat.proc3829871.chain_1630,blat.proc3829871.chain_1631,blat.proc3829871.chain_1635	8
scaffold_4	ends_in_intron	5883918	5883918	-	asmbl_41385	none	Trinity_GG_19489_c1_g1_i1,blat.proc3829889.chain_539	2	STRG.4480.2,blat.proc3829889.chain_537	2
scaffold_10	alt_acceptor	17502972	17502973	+	asmbl_5055	none	STRG.13190.2	1	STRG.13190.1,Trinity_GG_7218_c0_g1_i1,blat.proc3829877.chain_1646	3
scaffold_19	ends_in_intron	3558329	3558329	+	asmbl_22129	none	Trinity_GG_12191_c0_g1_i4,blat.proc3829881.chain_2996	2	STRG.22033.1,STRG.22033.2,STRG.22033.3,STRG.22033.4	4
scaffold_10	starts_in_intron	6332829	6332829	+	asmbl_4517	none	Trinity_GG_6901_c0_g1_i2	1	STRG.12455.1	1
scaffold_3	starts_in_intron	17345200	17345200	+	asmbl_40631	none	STRG.3962.2	1	STRG.3962.1,blat.proc3829873.chain_361	2
scaffold_6	retained_intron	573670	573950	+	asmbl_46616	none	STRG.7105.1,Trinity_GG_3890_c0_g1_i1,blat.proc3829873.chain_3209	3	Trinity_GG_3890_c0_g1_i3,blat.proc3829873.chain_3208	2
scaffold_3	ends_in_intron	10607046	10607046	-	asmbl_39054,asmbl_39055	none	STRG.3497.2,blat.proc3829887.chain_3202,blat.proc3829887.chain_3203	3	STRG.3497.1,blat.proc3829887.chain_3201	2
scaffold_20	alternate_exon	1952027	1952219	-	asmbl_26552	none	blat.proc3829897.chain_3699	1	STRG.22923.2	1
scaffold_20	starts_in_intron	10133833	10133833	+	asmbl_26093	none	Trinity_GG_13031_c0_g1_i2,blat.proc3829883.chain_664	2	STRG.23544.1,Trinity_GG_13031_c0_g1_i1,blat.proc3829883.chain_663	3
scaffold_2	retained_intron	16414060	16414370	-	asmbl_23705,asmbl_23708	none	STRG.2585.3,blat.proc3829887.chain_2413	2	STRG.2585.2,blat.proc3829887.chain_2409	2
scaffold_24	spliced_intron	8992308	8992351	+	asmbl_32481	none	STRG.26905.2	1	STRG.26905.1,Trinity_GG_14888_c0_g1_i2,blat.proc3829885.chain_59	3
scaffold_28	retained_intron	4255778	4255887	-	asmbl_37525	none	blat.proc3829901.chain_2715	1	STRG.29599.1,blat.proc3829901.chain_2716	2
scaffold_8	retained_exon	13144679	13144729	-	asmbl_53280,asmbl_53283	none	blat.proc3829891.chain_2628,blat.proc3829891.chain_2631	2	blat.proc3829891.chain_2629,blat.proc3829891.chain_2630	2
scaffold_3	ends_in_intron	2232783	2232783	+	asmbl_39851	none	blat.proc3829871.chain_3131	1	STRG.3021.1	1
scaffold_8	starts_in_intron	14430924	14430924	+	asmbl_52362	none	Trinity_GG_5866_c1_g1_i1,blat.proc3829875.chain_3045	2	STRG.10524.2	1
scaffold_20	retained_intron	11948483	11948577	-	asmbl_27132,asmbl_27133	none	STRG.23687.2,STRG.23687.3,blat.proc3829899.chain_604	3	blat.proc3829899.chain_603	1
scaffold_15	alternate_exon	6193587	6193822	+	asmbl_14189,asmbl_14190	none	STRG.18272.1,STRG.18272.2	2	STRG.18272.4,STRG.18272.5	2
scaffold_20	spliced_intron	10384363	10384458	+	asmbl_26113,asmbl_26115	none	STRG.23569.3,STRG.23569.5	2	blat.proc3829883.chain_590	1
scaffold_3	alt_donor	7709074	7709075	-	asmbl_38927,asmbl_38930,asmbl_38933	none	STRG.3361.1,blat.proc3829887.chain_3172,blat.proc3829887.chain_3175,blat.proc3829887.chain_3177	4	STRG.3361.2,blat.proc3829887.chain_3171,blat.proc3829887.chain_3173,blat.proc3829887.chain_3174	4
scaffold_18	spliced_intron	824174	824499	+	asmbl_20354	none	blat.proc3829881.chain_1782	1	STRG.20996.2,Trinity_GG_11513_c0_g1_i7,blat.proc3829881.chain_1778,blat.proc3829881.chain_1780	4
scaffold_6	starts_in_intron	15087434	15087434	-	asmbl_48986	none	blat.proc3829891.chain_571	1	STRG.8265.1	1
scaffold_13	alt_acceptor	3477339	3477340	-	asmbl_9501	none	STRG.15643.1,blat.proc3829895.chain_387	2	STRG.15643.2	1
scaffold_6	skipped_exon	2744478	2745595	-	asmbl_48106	none	blat.proc3829889.chain_3262	1	STRG.7260.1,Trinity_GG_21072_c0_g1_i1	2
scaffold_4	retained_intron	3231032	3231615	-	asmbl_41160	none	blat.proc3829889.chain_344	1	STRG.4246.1,blat.proc3829889.chain_340	2
scaffold_27	alternate_exon	143096	144984	-	asmbl_36598	none	STRG.28528.2	1	STRG.28528.3,Trinity_GG_32960_c0_g1_i5,blat.proc3829901.chain_1701	3
scaffold_10	retained_intron	3757724	3757863	-	asmbl_3134,asmbl_3136	none	STRG.12200.1,STRG.12200.2	2	STRG.12200.3	1
scaffold_15	alt_acceptor	5628136	5628137	-	asmbl_15240	none	STRG.18239.2	1	STRG.18239.1,Trinity_GG_27277_c0_g1_i1,Trinity_GG_27277_c0_g1_i2,blat.proc3829895.chain_3004,blat.proc3829895.chain_3005	5
scaffold_1	alt_acceptor	13882872	13882873	-	asmbl_857,asmbl_859	none	STRG.993.3,STRG.993.5,blat.proc3829887.chain_866	3	STRG.993.1,STRG.993.2,STRG.993.4,blat.proc3829887.chain_865,blat.proc3829887.chain_867,blat.proc3829887.chain_868	6
scaffold_7	retained_intron	8508720	8510079	+	asmbl_50884,asmbl_50885,asmbl_50889,asmbl_50891	none	STRG.9068.2,STRG.9068.5,blat.proc3829875.chain_1526,blat.proc3829875.chain_1530	4	STRG.9068.4,blat.proc3829875.chain_1525	2
scaffold_8	spliced_intron	14432596	14432761	+	asmbl_52360	none	STRG.10524.1,blat.proc3829875.chain_3041	2	blat.proc3829875.chain_3042	1
scaffold_6	retained_intron	3065689	3066024	+	asmbl_46759	none	blat.proc3829873.chain_3432	1	STRG.7310.1,STRG.7310.2,blat.proc3829873.chain_3430,blat.proc3829873.chain_3431	4
scaffold_14	retained_intron	6281800	6282048	+	asmbl_12034,asmbl_12035,asmbl_12036,asmbl_12040	none	STRG.17063.1,STRG.17063.2,STRG.17063.4,STRG.17063.5,blat.proc3829879.chain_1740,blat.proc3829879.chain_1742,blat.proc3829879.chain_1744,blat.proc3829879.chain_1746	8	STRG.17063.3,blat.proc3829879.chain_1741	2
scaffold_11	retained_exon	3558136	3558269	-	asmbl_6528,asmbl_6529	none	STRG.13471.1,blat.proc3829893.chain_1943,blat.proc3829893.chain_1946	3	STRG.13471.2	1
scaffold_5	starts_in_intron	7707899	7707899	+	asmbl_44163	none	Trinity_GG_3357_c0_g1_i3,blat.proc3829873.chain_2299	2	STRG.6139.1,STRG.6139.2,blat.proc3829873.chain_2297	3
scaffold_1	alt_acceptor	863590	863591	+	asmbl_1429	none	STRG.37.1,Trinity_GG_35_c0_g1_i2,blat.proc3829871.chain_61	3	STRG.37.2,Trinity_GG_35_c0_g1_i4,blat.proc3829871.chain_59	3
scaffold_20	alternate_exon	9965669	9965892	-	asmbl_26990	none	STRG.23526.3,blat.proc3829899.chain_550	2	STRG.23526.1,STRG.23526.2,blat.proc3829899.chain_551,blat.proc3829899.chain_552	4
scaffold_1	skipped_exon	22133297	22135537	+	asmbl_2672	none	STRG.1479.3	1	STRG.1479.1,STRG.1479.2	2
scaffold_25	alt_acceptor	842568	842569	-	asmbl_33996	none	STRG.27125.2,blat.proc3829901.chain_446	2	STRG.27125.1	1
scaffold_19	alt_acceptor	2780788	2780789	+	asmbl_22081,asmbl_22082	none	STRG.21950.4,STRG.21950.5	2	STRG.21950.1,STRG.21950.2,STRG.21950.3,blat.proc3829881.chain_2913	4
scaffold_2	alt_acceptor	9862344	9862345	-	asmbl_23409	none	STRG.2190.1,blat.proc3829887.chain_2112	2	STRG.2190.3	1
scaffold_11	alt_acceptor	2283139	2283140	-	asmbl_6467	none	STRG.13371.1,blat.proc3829893.chain_1848	2	STRG.13371.2	1
scaffold_11	starts_in_intron	17086086	17086086	-	asmbl_7227	none	STRG.14362.3,blat.proc3829893.chain_2772	2	STRG.14362.1,STRG.14362.2,STRG.14362.4,STRG.14362.5,blat.proc3829893.chain_2767,blat.proc3829893.chain_2768,blat.proc3829893.chain_2771	7
scaffold_15	alt_donor	15339426	15339427	+	asmbl_14700	none	STRG.18905.2	1	STRG.18905.1,Trinity_GG_10365_c0_g1_i1,blat.proc3829879.chain_3495	3
scaffold_5	skipped_exon	19029102	19031503	-	asmbl_46261,asmbl_46269	none	STRG.7018.5,blat.proc3829889.chain_3003	2	blat.proc3829889.chain_3008	1
scaffold_7	ends_in_intron	4931257	4931257	+	asmbl_50657	none	blat.proc3829875.chain_1285	1	STRG.8834.1,STRG.8834.2,blat.proc3829875.chain_1275,blat.proc3829875.chain_1276,blat.proc3829875.chain_1278,blat.proc3829875.chain_1279,blat.proc3829875.chain_1280,blat.proc3829875.chain_1281,blat.proc3829875.chain_1282,blat.proc3829875.chain_1283	10
scaffold_1	alt_acceptor	11763230	11763231	+	asmbl_2129,asmbl_2130	none	STRG.795.1,blat.proc3829871.chain_892,blat.proc3829871.chain_893	3	STRG.795.2,STRG.795.3	2
scaffold_2	ends_in_intron	6901009	6901009	+	asmbl_24535,asmbl_24543	none	STRG.2036.4,Trinity_GG_1103_c0_g2_i1,blat.proc3829871.chain_2023	3	STRG.2036.1,STRG.2036.3,STRG.2036.5,blat.proc3829871.chain_2016,blat.proc3829871.chain_2018,blat.proc3829871.chain_2019	6
scaffold_6	alt_acceptor	5196975	5196976	+	asmbl_46864	none	STRG.7489.3,blat.proc3829873.chain_3581	2	STRG.7489.2,STRG.7489.4,Trinity_GG_4091_c0_g1_i10,blat.proc3829873.chain_3583,blat.proc3829873.chain_3585,blat.proc3829873.chain_3587	6
scaffold_4	ends_in_intron	16502375	16502375	-	asmbl_41937	none	blat.proc3829889.chain_1296	1	STRG.5230.1,blat.proc3829889.chain_1297,blat.proc3829889.chain_1298	3
scaffold_9	starts_in_intron	5022108	5022108	+	asmbl_53964	none	Trinity_GG_6159_c1_g1_i1,blat.proc3829875.chain_3530	2	STRG.11062.2	1
scaffold_2	alt_acceptor	7266583	7266584	-	asmbl_23269	none	STRG.2055.1,Trinity_GG_18155_c0_g1_i1,blat.proc3829887.chain_1952	3	STRG.2055.2	1
scaffold_15	spliced_intron	15409791	15410182	+	asmbl_14723	none	STRG.18921.10	1	blat.proc3829879.chain_3516	1
scaffold_13	alt_acceptor	11271465	11271466	-	asmbl_10037	none	STRG.16275.1,blat.proc3829895.chain_1011	2	STRG.16275.2	1
scaffold_20	retained_intron	10987413	10987518	+	asmbl_26157,asmbl_26158	none	STRG.23608.1,Trinity_GG_13068_c0_g1_i1,Trinity_GG_13068_c0_g1_i3,blat.proc3829883.chain_749,blat.proc3829883.chain_751	5	STRG.23608.2,STRG.23608.3,Trinity_GG_13068_c0_g1_i4,blat.proc3829883.chain_750	4
scaffold_6	spliced_intron	8475432	8475513	-	asmbl_48496	none	STRG.7718.1,blat.proc3829889.chain_3710	2	STRG.7718.2	1
scaffold_21	skipped_exon	736707	738287	+	asmbl_28317	none	STRG.23750.1,Trinity_GG_13167_c0_g1_i2,blat.proc3829883.chain_920	3	STRG.23750.2,blat.proc3829883.chain_919	2
scaffold_27	starts_in_intron	4385371	4385371	+	asmbl_36242	none	STRG.28876.4	1	STRG.28876.1,STRG.28876.3,blat.proc3829885.chain_1986,blat.proc3829885.chain_1987,blat.proc3829885.chain_1988,blat.proc3829885.chain_1989	6
scaffold_7	alt_donor	18394915	18394916	-	asmbl_50288,asmbl_50292,asmbl_50295,asmbl_50296,asmbl_50297,asmbl_50298,asmbl_50299	none	STRG.9659.1,STRG.9659.2,STRG.9659.4,STRG.9659.5,blat.proc3829891.chain_1868,blat.proc3829891.chain_1869,blat.proc3829891.chain_1871,blat.proc3829891.chain_1873	8	STRG.9659.3,Trinity_GG_22427_c0_g1_i11,blat.proc3829891.chain_1875	3
scaffold_18	retained_intron	11326733	11326957	+	asmbl_20962,asmbl_20963	none	STRG.21666.1,blat.proc3829881.chain_2651,blat.proc3829881.chain_2659	3	STRG.21666.2,blat.proc3829881.chain_2648	2
scaffold_6	alt_acceptor	13176630	13176631	+	asmbl_47418	none	STRG.8069.2,blat.proc3829875.chain_487	2	STRG.8069.1,STRG.8069.3,blat.proc3829875.chain_486,blat.proc3829875.chain_488	4
scaffold_3	retained_intron	14433082	14433258	-	asmbl_39319,asmbl_39321	none	STRG.3781.1,Trinity_GG_19066_c0_g1_i1,Trinity_GG_19066_c0_g1_i3,blat.proc3829887.chain_3506,blat.proc3829887.chain_3509	5	STRG.3781.2,STRG.3781.3,Trinity_GG_19066_c0_g1_i4,blat.proc3829887.chain_3507	4
scaffold_27	starts_in_intron	1773467	1773467	+	asmbl_35998	none	Trinity_GG_15863_c0_g1_i1	1	STRG.28648.1,STRG.28648.2,Trinity_GG_15863_c0_g1_i2	3
scaffold_1	spliced_intron	857694	857888	-	asmbl_26,asmbl_27	none	STRG.43.1,blat.proc3829885.chain_3698,blat.proc3829885.chain_3700	3	STRG.43.2,blat.proc3829885.chain_3699	2
scaffold_8	alt_acceptor	3489239	3489240	+	asmbl_51758,asmbl_51759,asmbl_51761	none	STRG.9839.1,STRG.9839.3,blat.proc3829875.chain_2330,blat.proc3829875.chain_2331	4	STRG.9839.2	1
scaffold_4	alt_donor	6701516	6701517	+	asmbl_42754	none	STRG.4530.2	1	STRG.4530.1,STRG.4530.3,blat.proc3829873.chain_876	3
scaffold_6	alternate_exon	3052622	3052978	+	asmbl_46747	none	blat.proc3829873.chain_3448	1	STRG.7308.1,blat.proc3829873.chain_3438,blat.proc3829873.chain_3439	3
scaffold_13	spliced_intron	8831245	8831460	-	asmbl_9952	none	STRG.16144.1,blat.proc3829895.chain_860	2	Trinity_GG_26045_c0_g1_i2,blat.proc3829895.chain_859	2
scaffold_9	alt_acceptor	9706781	9706782	+	asmbl_54211	none	STRG.11336.3,Trinity_GG_6324_c1_g1_i12,blat.proc3829877.chain_113	3	STRG.11336.2,blat.proc3829877.chain_109	2
scaffold_13	starts_in_intron	11381632	11381632	-	asmbl_10048	none	Trinity_GG_26140_c0_g1_i8	1	STRG.16287.1,blat.proc3829895.chain_1034	2
scaffold_16	ends_in_intron	8648806	8648806	+	asmbl_17238	none	blat.proc3829881.chain_373	1	STRG.19480.1,STRG.19480.2,STRG.19480.3,blat.proc3829881.chain_374,blat.proc3829881.chain_375,blat.proc3829881.chain_376	6
scaffold_7	spliced_intron	12455195	12455507	-	asmbl_50036,asmbl_50042,asmbl_50043,asmbl_50046	none	STRG.9342.1,STRG.9342.2,STRG.9342.4,STRG.9342.5,blat.proc3829891.chain_1602	5	Trinity_GG_22282_c0_g1_i1,blat.proc3829891.chain_1601	2
scaffold_9	retained_intron	17469882	17470142	-	asmbl_55610	none	STRG.11832.1,blat.proc3829893.chain_239	2	STRG.11832.2	1
scaffold_10	starts_in_intron	6475774	6475774	-	asmbl_3380,asmbl_3381,asmbl_3385	none	blat.proc3829893.chain_940,blat.proc3829893.chain_941,blat.proc3829893.chain_945	3	blat.proc3829893.chain_942,blat.proc3829893.chain_943,blat.proc3829893.chain_944	3
scaffold_18	alt_acceptor	8410380	8410381	+	asmbl_20863	none	STRG.21507.1,Trinity_GG_11897_c0_g1_i1,blat.proc3829881.chain_2509	3	STRG.21507.2	1
scaffold_27	alt_donor	6071526	6071527	+	asmbl_36325	none	STRG.28987.2,blat.proc3829885.chain_2112	2	STRG.28987.1,STRG.28987.3,blat.proc3829885.chain_2113	3
scaffold_8	spliced_intron	16502745	16503358	-	asmbl_53409,asmbl_53420,asmbl_53423,asmbl_53428	none	STRG.10621.5,Trinity_GG_22960_c0_g1_i9,blat.proc3829891.chain_2858,blat.proc3829891.chain_2859,blat.proc3829891.chain_2865	5	Trinity_GG_22960_c0_g1_i24,blat.proc3829891.chain_2856	2
scaffold_1	retained_intron	9031944	9032149	-	asmbl_520	none	Trinity_GG_17343_c0_g1_i2,blat.proc3829887.chain_516	2	STRG.600.1,Trinity_GG_17343_c0_g1_i1,blat.proc3829887.chain_515	3
scaffold_23	ends_in_intron	3511652	3511652	-	asmbl_31525	none	blat.proc3829899.chain_2890	1	STRG.25754.1,STRG.25754.2,blat.proc3829899.chain_2893,blat.proc3829899.chain_2895	4
scaffold_9	alt_acceptor	11163	11164	-	asmbl_54762	none	STRG.10751.1,Trinity_GG_23002_c0_g1_i1,blat.proc3829891.chain_2955	3	STRG.10751.2	1
scaffold_23	alt_acceptor	7046494	7046495	-	asmbl_31734	none	blat.proc3829899.chain_3118	1	STRG.26010.1,blat.proc3829899.chain_3117,blat.proc3829899.chain_3120	3
scaffold_8	alt_donor	4847434	4847435	-	asmbl_52799,asmbl_52801	none	STRG.9941.2,blat.proc3829891.chain_2053	2	STRG.9941.1,blat.proc3829891.chain_2051,blat.proc3829891.chain_2052,blat.proc3829891.chain_2056	4
scaffold_15	retained_intron	4964556	4964665	+	asmbl_14124	none	STRG.18193.4	1	STRG.18193.3,blat.proc3829879.chain_2759,blat.proc3829879.chain_2763	3
scaffold_3	alt_donor	1551310	1551311	-	asmbl_38678	none	blat.proc3829887.chain_2715	1	STRG.2981.1,STRG.2981.2,blat.proc3829887.chain_2716	3
scaffold_11	alt_donor	1433331	1433332	-	asmbl_6406	none	STRG.13314.1,STRG.13314.2,blat.proc3829893.chain_1783	3	STRG.13314.3	1
scaffold_3	spliced_intron	7972688	7972770	+	asmbl_40147	none	STRG.3381.1,blat.proc3829871.chain_3494	2	blat.proc3829871.chain_3495	1
scaffold_16	alternate_exon	8715466	8715506	-	asmbl_16433,asmbl_16434	none	STRG.19484.2,STRG.19484.3,blat.proc3829897.chain_509,blat.proc3829897.chain_511	4	STRG.19484.1,blat.proc3829897.chain_508,blat.proc3829897.chain_510	3
scaffold_13	starts_in_intron	7215255	7215255	+	asmbl_11006	none	STRG.16002.2,Trinity_GG_8782_c1_g1_i1,blat.proc3829879.chain_702	3	STRG.16002.1,blat.proc3829879.chain_695,blat.proc3829879.chain_696,blat.proc3829879.chain_698,blat.proc3829879.chain_699,blat.proc3829879.chain_700,blat.proc3829879.chain_701	7
scaffold_7	retained_intron	289521	289547	+	asmbl_50429,asmbl_50432	none	Trinity_GG_4731_c0_g1_i3,Trinity_GG_4731_c0_g1_i6	2	STRG.8593.1,STRG.8593.2	2
scaffold_8	alt_donor	10027588	10027589	-	asmbl_53086	none	STRG.10250.1,blat.proc3829891.chain_2348	2	STRG.10250.2	1
scaffold_7	alt_donor	18338023	18338024	+	asmbl_51409	none	STRG.9651.2,blat.proc3829875.chain_2116	2	STRG.9651.1,blat.proc3829875.chain_2115	2
scaffold_6	retained_intron	10897965	10898174	+	asmbl_47243	none	Trinity_GG_4335_c0_g1_i4,blat.proc3829875.chain_291	2	STRG.7901.1,STRG.7901.2,blat.proc3829875.chain_290,blat.proc3829875.chain_292	4
scaffold_8	alt_acceptor	18152313	18152314	+	asmbl_52529	none	STRG.10711.1,Trinity_GG_5943_c0_g1_i1,blat.proc3829875.chain_3205	3	STRG.10711.2	1
scaffold_15	retained_intron	9732951	9733059	-	asmbl_15428	none	Trinity_GG_27344_c0_g1_i5	1	STRG.18480.1,STRG.18480.2,blat.proc3829895.chain_3131	3
scaffold_14	spliced_intron	176800	176929	-	asmbl_12767,asmbl_12768	none	STRG.16696.1,blat.proc3829895.chain_1362,blat.proc3829895.chain_1364	3	STRG.16696.2	1
scaffold_19	alternate_exon	8174401	8177953	-	asmbl_21487	none	STRG.22255.1,blat.proc3829897.chain_2989	2	STRG.22255.2,Trinity_GG_29417_c0_g1_i1,blat.proc3829897.chain_2990	3
scaffold_3	ends_in_intron	7920601	7920601	-	asmbl_38955	none	Trinity_GG_18803_c0_g2_i1,blat.proc3829887.chain_3075	2	STRG.3375.1,STRG.3375.2,STRG.3375.3,STRG.3375.4,STRG.3375.5,blat.proc3829887.chain_3073,blat.proc3829887.chain_3074	7
scaffold_5	spliced_intron	16650755	16650859	+	asmbl_44775,asmbl_44776,asmbl_44777,asmbl_44778	none	STRG.6846.1,STRG.6846.2,STRG.6846.3,Trinity_GG_3703_c0_g1_i2,blat.proc3829873.chain_2906,blat.proc3829873.chain_2908,blat.proc3829873.chain_2910	7	Trinity_GG_3703_c0_g1_i1,Trinity_GG_3703_c0_g1_i3,blat.proc3829873.chain_2907,blat.proc3829873.chain_2909	4
scaffold_13	spliced_intron	3055042	3055287	-	asmbl_9470,asmbl_9472	none	STRG.15597.1,STRG.15597.2,blat.proc3829895.chain_335	3	STRG.15597.3	1
scaffold_23	skipped_exon	9117592	9120056	-	asmbl_31808	none	blat.proc3829899.chain_3146	1	STRG.26140.1,blat.proc3829899.chain_3147	2
scaffold_13	spliced_intron	7965217	7965352	-	asmbl_9882	none	STRG.16060.1,blat.proc3829895.chain_761	2	STRG.16060.2	1
scaffold_4	alt_acceptor	14679949	14679950	-	asmbl_41824,asmbl_41826	none	STRG.5103.1,STRG.5103.2,blat.proc3829889.chain_1080	3	STRG.5103.3	1
scaffold_3	alternate_exon	6822015	6822198	+	asmbl_40093	none	blat.proc3829871.chain_3443	1	STRG.3304.2	1
scaffold_10	retained_exon	6052478	6052558	+	asmbl_4500,asmbl_4508,asmbl_4511	none	STRG.12431.1,blat.proc3829877.chain_1066,blat.proc3829877.chain_1068,blat.proc3829877.chain_1071,blat.proc3829877.chain_1072,blat.proc3829877.chain_1073	6	STRG.12431.2,blat.proc3829877.chain_1065,blat.proc3829877.chain_1067	3
scaffold_12	retained_exon	10004225	10004603	-	asmbl_7842	none	STRG.14963.3	1	STRG.14963.2,blat.proc3829893.chain_3284	2
scaffold_16	starts_in_intron	14636078	14636078	+	asmbl_17499	none	Trinity_GG_10872_c0_g1_i1,blat.proc3829881.chain_695	2	STRG.19843.1,blat.proc3829881.chain_694	2
scaffold_6	retained_intron	15760487	15760603	-	asmbl_49018	none	Trinity_GG_21687_c0_g1_i5,blat.proc3829891.chain_537	2	STRG.8311.1,STRG.8311.2	2
scaffold_26	retained_intron	7900294	7900429	+	asmbl_35679	none	STRG.28392.1,blat.proc3829885.chain_1420	2	STRG.28392.2,blat.proc3829885.chain_1418	2
scaffold_20	alt_donor	8154329	8154330	-	asmbl_26889	none	STRG.23349.3,blat.proc3829899.chain_411	2	STRG.23349.2,blat.proc3829899.chain_409	2
scaffold_28	retained_intron	8051811	8052141	+	asmbl_38414	none	Trinity_GG_16534_c0_g1_i2,blat.proc3829885.chain_2949	2	STRG.29850.1,Trinity_GG_16534_c0_g1_i1,blat.proc3829885.chain_2948	3
scaffold_19	retained_exon	5626483	5626591	+	asmbl_22187	none	STRG.22116.1,blat.proc3829881.chain_3077	2	STRG.22116.4	1
scaffold_14	spliced_intron	405082	405204	+	asmbl_11725	none	blat.proc3829879.chain_1469	1	STRG.16722.7,Trinity_GG_9219_c0_g1_i17,blat.proc3829879.chain_1472	3
scaffold_5	spliced_intron	10380174	10380270	-	asmbl_45734,asmbl_45735,asmbl_45736,asmbl_45737,asmbl_45738	none	STRG.6330.1,STRG.6330.2,STRG.6330.3,blat.proc3829889.chain_2439,blat.proc3829889.chain_2441	5	blat.proc3829889.chain_2440	1
scaffold_6	starts_in_intron	12117345	12117345	+	asmbl_47312	none	Trinity_GG_4362_c0_g1_i7,blat.proc3829875.chain_357	2	STRG.7978.1,STRG.7978.2,STRG.7978.3,STRG.7978.4,Trinity_GG_4362_c0_g1_i2,Trinity_GG_4362_c0_g1_i5,blat.proc3829875.chain_358,blat.proc3829875.chain_359,blat.proc3829875.chain_360	9
scaffold_18	retained_intron	1896938	1897477	-	asmbl_19689,asmbl_19693,asmbl_19701	none	STRG.21072.2,STRG.21072.3,STRG.21072.8	3	STRG.21072.10,STRG.21072.7,STRG.21072.9,blat.proc3829897.chain_1890,blat.proc3829897.chain_1897,blat.proc3829897.chain_1898,blat.proc3829897.chain_1899,blat.proc3829897.chain_1901,blat.proc3829897.chain_1902	9
scaffold_4	starts_in_intron	11352273	11352273	-	asmbl_41624	none	blat.proc3829889.chain_903	1	STRG.4836.1,blat.proc3829889.chain_904	2
scaffold_16	spliced_intron	6232211	6232250	-	asmbl_16331	none	STRG.19353.1	1	blat.proc3829897.chain_385	1
scaffold_1	ends_in_intron	16101169	16101169	+	asmbl_2445	none	blat.proc3829871.chain_1209	1	STRG.1130.1,Trinity_GG_672_c0_g1_i3,blat.proc3829871.chain_1208	3
scaffold_25	alt_donor	3084655	3084656	-	asmbl_34075,asmbl_34076,asmbl_34079,asmbl_34080,asmbl_34081	none	STRG.27230.1,STRG.27230.2,blat.proc3829901.chain_488,blat.proc3829901.chain_489,blat.proc3829901.chain_490	5	STRG.27230.3	1
scaffold_17	retained_intron	8221394	8221539	+	asmbl_18083	none	STRG.20435.4	1	STRG.20435.3,blat.proc3829881.chain_1199,blat.proc3829881.chain_1203	3
scaffold_6	alt_acceptor	10867070	10867071	+	asmbl_47237	none	STRG.7897.1,blat.proc3829875.chain_286	2	STRG.7897.2,blat.proc3829875.chain_285	2
scaffold_17	alt_donor	10067475	10067476	+	asmbl_18294,asmbl_18295	none	STRG.20614.2,Trinity_GG_11298_c0_g1_i2,blat.proc3829881.chain_1450	3	STRG.20614.1,Trinity_GG_11298_c0_g1_i1,blat.proc3829881.chain_1451	3
scaffold_1	alternate_exon	14076352	14082563	+	asmbl_2313	none	STRG.999.2,Trinity_GG_614_c1_g1_i1,blat.proc3829871.chain_1104	3	STRG.999.1,Trinity_GG_614_c0_g1_i3,Trinity_GG_614_c0_g1_i4,blat.proc3829871.chain_1100,blat.proc3829871.chain_1102	5
scaffold_9	retained_intron	16664696	16664923	-	asmbl_55572	none	blat.proc3829893.chain_190	1	STRG.11800.2,blat.proc3829893.chain_192	2
scaffold_7	starts_in_intron	8611864	8611864	+	asmbl_50913	none	Trinity_GG_5041_c0_g1_i3,blat.proc3829875.chain_1540	2	STRG.9080.1,blat.proc3829875.chain_1541	2
scaffold_13	spliced_intron	2271214	2271358	-	asmbl_9400,asmbl_9401,asmbl_9402,asmbl_9403	none	STRG.15533.1,STRG.15533.2,STRG.15533.3,blat.proc3829895.chain_308,blat.proc3829895.chain_309,blat.proc3829895.chain_311,blat.proc3829895.chain_316	7	blat.proc3829895.chain_310,blat.proc3829895.chain_317	2
scaffold_10	starts_in_intron	3876604	3876604	+	asmbl_4365	none	Trinity_GG_6749_c0_g1_i1,blat.proc3829877.chain_840	2	STRG.12217.1,Trinity_GG_6749_c0_g1_i2,blat.proc3829877.chain_839	3
scaffold_3	alt_acceptor	13768960	13768961	+	asmbl_40417	none	STRG.3725.3	1	STRG.3725.1,blat.proc3829873.chain_120	2
scaffold_18	alt_donor	8913422	8913423	-	asmbl_20080,asmbl_20085	none	STRG.21550.3,blat.proc3829897.chain_2398	2	STRG.21550.2	1
scaffold_25	skipped_exon	9939292	9940567	-	asmbl_34499	none	STRG.27802.1	1	STRG.27802.2	1
scaffold_7	retained_intron	13015452	13015641	-	asmbl_50094,asmbl_50099	none	STRG.9408.2,blat.proc3829891.chain_1657	2	STRG.9408.1,blat.proc3829891.chain_1652	2
scaffold_11	skipped_exon	6591255	6592422	-	asmbl_6701	none	STRG.13693.2	1	STRG.13693.1,blat.proc3829893.chain_2138,blat.proc3829893.chain_2139	3
scaffold_8	spliced_intron	16274198	16274331	-	asmbl_53385,asmbl_53386,asmbl_53387	none	STRG.10612.1,STRG.10612.2,STRG.10612.4,blat.proc3829891.chain_2748,blat.proc3829891.chain_2750	5	STRG.10612.3,Trinity_GG_22905_c0_g1_i2,blat.proc3829891.chain_2749	3
scaffold_10	spliced_intron	326050	326526	-	asmbl_2849	none	STRG.11908.1,Trinity_GG_23604_c0_g1_i2,blat.proc3829893.chain_292	3	STRG.11908.2,Trinity_GG_23604_c0_g1_i1,blat.proc3829893.chain_293	3
scaffold_14	alt_acceptor	202906	202907	-	asmbl_12778,asmbl_12779	none	STRG.16702.1,STRG.16702.3,blat.proc3829895.chain_1406	3	STRG.16702.4,blat.proc3829895.chain_1408,blat.proc3829895.chain_1409	3
scaffold_28	alt_donor	7304674	7304675	-	asmbl_37722	none	STRG.29781.2	1	STRG.29781.1,STRG.29781.3,STRG.29781.4	3
scaffold_2	spliced_intron	19881129	19881471	+	asmbl_25330	none	STRG.2832.1,Trinity_GG_1561_c0_g2_i1,blat.proc3829871.chain_2944	3	Trinity_GG_1561_c0_g1_i1,blat.proc3829871.chain_2943	2
scaffold_8	spliced_intron	6028190	6028278	+	asmbl_51911,asmbl_51912,asmbl_51914	none	blat.proc3829875.chain_2552,blat.proc3829875.chain_2553,blat.proc3829875.chain_2555	3	Trinity_GG_5590_c1_g1_i6,blat.proc3829875.chain_2551,blat.proc3829875.chain_2554	3
scaffold_19	starts_in_intron	13173214	13173214	+	asmbl_22674	none	Trinity_GG_12483_c0_g1_i3,blat.proc3829881.chain_3527	2	STRG.22628.1,blat.proc3829881.chain_3526	2
scaffold_7	starts_in_intron	811132	811132	+	asmbl_50445	none	Trinity_GG_4707_c1_g1_i2,blat.proc3829875.chain_978	2	STRG.8613.1,Trinity_GG_4707_c1_g1_i1,Trinity_GG_4707_c1_g1_i3,blat.proc3829875.chain_977,blat.proc3829875.chain_979	5
scaffold_13	ends_in_intron	4461946	4461946	-	asmbl_9595	none	Trinity_GG_25865_c1_g1_i1,blat.proc3829895.chain_503	2	STRG.15756.1	1
scaffold_7	ends_in_intron	265488	265488	+	asmbl_50426	none	Trinity_GG_4736_c2_g1_i1,blat.proc3829875.chain_1029	2	STRG.8586.1,STRG.8586.3	2
scaffold_3	retained_intron	7972688	7972773	+	asmbl_40148	none	blat.proc3829871.chain_3495	1	STRG.3381.2	1
scaffold_5	skipped_exon	9083030	9083968	+	asmbl_44265,asmbl_44269,asmbl_44270	none	STRG.6237.3,STRG.6237.4,blat.proc3829873.chain_2423	3	STRG.6237.1,STRG.6237.2,STRG.6237.5,blat.proc3829873.chain_2418,blat.proc3829873.chain_2419,blat.proc3829873.chain_2421,blat.proc3829873.chain_2422,blat.proc3829873.chain_2426	8
scaffold_9	spliced_intron	17610765	17610884	-	asmbl_55623,asmbl_55625	none	STRG.11843.1,blat.proc3829893.chain_182,blat.proc3829893.chain_183,blat.proc3829893.chain_185	4	STRG.11843.2,STRG.11843.3,STRG.11843.4,Trinity_GG_23540_c0_g2_i1,blat.proc3829893.chain_187	5
scaffold_16	ends_in_intron	4076719	4076719	+	asmbl_16958	none	Trinity_GG_10492_c0_g1_i2,blat.proc3829881.chain_1	2	STRG.19212.1,STRG.19212.2,blat.proc3829881.chain_2,blat.proc3829881.chain_3	4
scaffold_10	alternate_exon	3928828	3929132	-	asmbl_3154	none	STRG.12230.3,blat.proc3829893.chain_691	2	STRG.12230.1,blat.proc3829893.chain_693,blat.proc3829893.chain_694	3
scaffold_13	alternate_exon	8896041	8896069	-	asmbl_9953	none	STRG.16142.3,Trinity_GG_26083_c0_g1_i1,blat.proc3829895.chain_917	3	STRG.16142.2	1
scaffold_4	ends_in_intron	10851973	10851973	+	asmbl_43005	none	blat.proc3829873.chain_1168	1	STRG.4804.1,blat.proc3829873.chain_1167	2
scaffold_13	retained_intron	534534	534705	-	asmbl_9323	none	Trinity_GG_25674_c0_g1_i2,blat.proc3829895.chain_188	2	STRG.15432.1,STRG.15432.2,STRG.15432.3,Trinity_GG_25674_c0_g1_i1,Trinity_GG_25674_c0_g1_i4,blat.proc3829895.chain_187,blat.proc3829895.chain_189	7
scaffold_15	spliced_intron	15917540	15917607	+	asmbl_14792,asmbl_14797,asmbl_14798	none	STRG.18967.1,STRG.18967.2,STRG.18967.3,Trinity_GG_10379_c1_g1_i1,blat.proc3829879.chain_3526	5	STRG.18967.4,Trinity_GG_10379_c1_g1_i2,blat.proc3829879.chain_3527	3
scaffold_14	starts_in_intron	6911294	6911294	+	asmbl_12096	none	Trinity_GG_9435_c0_g1_i3	1	STRG.17116.1	1
scaffold_1	starts_in_intron	12110920	12110920	+	asmbl_2161	none	blat.proc3829871.chain_848	1	STRG.824.1,blat.proc3829871.chain_849	2
scaffold_2	spliced_intron	14561797	14561960	+	asmbl_24982,asmbl_24983,asmbl_24986,asmbl_24989	none	STRG.2454.1,STRG.2454.2,STRG.2454.4,STRG.2454.5	4	STRG.2454.3	1
scaffold_11	alt_acceptor	12678987	12678988	-	asmbl_7075	none	STRG.14150.2	1	STRG.14150.1	1
scaffold_28	retained_exon	7880680	7880694	-	asmbl_37757,asmbl_37759	none	blat.proc3829901.chain_2975,blat.proc3829901.chain_2978	2	STRG.29846.1,blat.proc3829901.chain_2977	2
scaffold_24	alternate_exon	6726585	6727126	-	asmbl_32961	none	blat.proc3829901.chain_20	1	STRG.26704.1,blat.proc3829901.chain_22,blat.proc3829901.chain_23,blat.proc3829901.chain_25	4
scaffold_12	retained_exon	3330692	3330742	+	asmbl_8508,asmbl_8510	none	STRG.14546.1,STRG.14546.3,blat.proc3829877.chain_3049	3	STRG.14546.2,blat.proc3829877.chain_3047	2
scaffold_14	skipped_exon	10017369	10019893	-	asmbl_13387	none	STRG.17358.2,blat.proc3829895.chain_2066	2	STRG.17358.3,STRG.17358.4,blat.proc3829895.chain_2065,blat.proc3829895.chain_2067	4
scaffold_2	alt_acceptor	13385055	13385056	-	asmbl_23523	none	STRG.2353.2	1	STRG.2353.1,Trinity_GG_18329_c0_g1_i1,blat.proc3829887.chain_2243	3
scaffold_13	alt_acceptor	6050053	6050054	-	asmbl_9724,asmbl_9726,asmbl_9728	none	STRG.15900.2,STRG.15900.4,STRG.15900.5,blat.proc3829895.chain_629,blat.proc3829895.chain_630	5	blat.proc3829895.chain_628	1
scaffold_2	retained_intron	947822	948713	+	asmbl_24187,asmbl_24189	none	STRG.1574.1,STRG.1574.3,blat.proc3829871.chain_1645	3	STRG.1574.2,blat.proc3829871.chain_1649	2
scaffold_4	starts_in_intron	16133716	16133716	-	asmbl_41889	none	STRG.5182.1	1	STRG.5182.2,STRG.5182.3,blat.proc3829889.chain_1220,blat.proc3829889.chain_1223	4
scaffold_24	starts_in_intron	6090518	6090518	-	asmbl_32917	none	blat.proc3829899.chain_3647	1	blat.proc3829899.chain_3649,blat.proc3829899.chain_3650	2
scaffold_11	retained_intron	11943939	11944171	-	asmbl_7026	none	Trinity_GG_24916_c1_g1_i1,blat.proc3829893.chain_2566	2	STRG.14160.2,STRG.14160.3,STRG.14160.4,STRG.14160.5,STRG.14160.6,blat.proc3829893.chain_2558	6
scaffold_9	starts_in_intron	6867408	6867408	-	asmbl_55042	none	blat.proc3829891.chain_3333	1	STRG.11186.1,blat.proc3829891.chain_3331,blat.proc3829891.chain_3334	3
scaffold_19	retained_intron	8263705	8263839	+	asmbl_22313	none	STRG.22277.2,Trinity_GG_12297_c0_g1_i2,blat.proc3829881.chain_3187	3	Trinity_GG_12297_c0_g1_i1	1
scaffold_21	spliced_intron	6616948	6617116	+	asmbl_28691,asmbl_28692,asmbl_28693	none	STRG.24174.1,blat.proc3829883.chain_1356,blat.proc3829883.chain_1357,blat.proc3829883.chain_1358	4	blat.proc3829883.chain_1359	1
scaffold_27	retained_exon	5798208	5798314	-	asmbl_36982	none	STRG.28963.2	1	STRG.28963.1	1
scaffold_21	spliced_intron	1272146	1272171	-	asmbl_27424	none	blat.proc3829899.chain_832	1	STRG.23792.1	1
scaffold_5	retained_intron	3630484	3630505	+	asmbl_43893	none	Trinity_GG_3205_c0_g1_i1	1	STRG.5828.1,STRG.5828.2	2
scaffold_10	ends_in_intron	12793441	12793441	+	asmbl_4815	none	blat.proc3829877.chain_1445,blat.proc3829877.chain_1447	2	STRG.12852.1	1
scaffold_22	spliced_intron	5923485	5923610	+	asmbl_29361,asmbl_29363	none	STRG.24922.1,STRG.24922.2,Trinity_GG_13792_c0_g1_i1,blat.proc3829883.chain_1977,blat.proc3829883.chain_1979	5	Trinity_GG_13792_c0_g1_i3,blat.proc3829883.chain_1978	2
scaffold_20	spliced_intron	11285643	11285794	+	asmbl_26179,asmbl_26181	none	STRG.23619.3,Trinity_GG_13069_c0_g1_i2,blat.proc3829883.chain_752	3	STRG.23619.1,STRG.23619.2,blat.proc3829883.chain_753	3
scaffold_16	starts_in_intron	813487	813487	-	asmbl_16086	none	blat.proc3829897.chain_2	1	STRG.19048.1	1
scaffold_6	spliced_intron	7516477	7517141	-	asmbl_48433,asmbl_48436	none	STRG.7647.4,blat.proc3829889.chain_3680	2	STRG.7647.2,blat.proc3829889.chain_3681	2
scaffold_15	spliced_intron	12434240	12434471	+	asmbl_14509	none	STRG.18688.1	1	blat.proc3829879.chain_3278,blat.proc3829879.chain_3280,blat.proc3829879.chain_3282,blat.proc3829879.chain_3286	4
scaffold_27	alt_acceptor	2881506	2881507	+	asmbl_36099,asmbl_36103,asmbl_36104	none	STRG.28753.1,STRG.28753.4,blat.proc3829885.chain_1817,blat.proc3829885.chain_1820	4	STRG.28753.2,STRG.28753.3,blat.proc3829885.chain_1818,blat.proc3829885.chain_1821,blat.proc3829885.chain_1823	5
scaffold_2	starts_in_intron	8055818	8055818	-	asmbl_23325	none	STRG.2095.5,blat.proc3829887.chain_2007	2	STRG.2095.3,Trinity_GG_18188_c1_g1_i1	2
scaffold_18	starts_in_intron	2834126	2834126	+	asmbl_20453	none	Trinity_GG_11580_c0_g1_i11,blat.proc3829881.chain_1919	2	STRG.21133.1,STRG.21133.2,blat.proc3829881.chain_1915,blat.proc3829881.chain_1923	4
scaffold_22	retained_intron	9911206	9911454	-	asmbl_30342	none	STRG.25311.1,blat.proc3829899.chain_2341	2	Trinity_GG_31135_c0_g1_i2,blat.proc3829899.chain_2342	2
scaffold_25	ends_in_intron	4555462	4555462	-	asmbl_34193	none	STRG.27375.3,Trinity_GG_32357_c2_g1_i1	2	STRG.27375.1,blat.proc3829901.chain_689	2
scaffold_4	alternate_exon	6939535	6948089	+	asmbl_42762,asmbl_42766,asmbl_42767	none	STRG.4536.1,blat.proc3829873.chain_899,blat.proc3829873.chain_903,blat.proc3829873.chain_905	4	Trinity_GG_2515_c0_g1_i7,blat.proc3829873.chain_902	2
scaffold_2	alt_donor	17972993	17972994	+	asmbl_25246	none	STRG.2687.2	1	STRG.2687.1,blat.proc3829871.chain_2900,blat.proc3829871.chain_2901,blat.proc3829871.chain_2902,blat.proc3829871.chain_2903	5
scaffold_15	alt_acceptor	375422	375423	+	asmbl_13904	none	STRG.17874.1,blat.proc3829879.chain_2554	2	STRG.17874.2	1
scaffold_21	starts_in_intron	3155826	3155826	+	asmbl_28481,asmbl_28482,asmbl_28491,asmbl_28492,asmbl_28493	none	blat.proc3829883.chain_1049,blat.proc3829883.chain_1050,blat.proc3829883.chain_1051,blat.proc3829883.chain_1054,blat.proc3829883.chain_1055	5	STRG.23945.1,blat.proc3829883.chain_1052,blat.proc3829883.chain_1053,blat.proc3829883.chain_1056	4
scaffold_3	retained_intron	17831614	17832488	+	asmbl_40660,asmbl_40661	none	STRG.3994.2,blat.proc3829873.chain_400	2	STRG.3994.1,blat.proc3829873.chain_398	2
scaffold_5	spliced_intron	12660558	12661236	+	asmbl_44482,asmbl_44488	none	STRG.6495.1,STRG.6495.2,blat.proc3829873.chain_2574,blat.proc3829873.chain_2578	4	blat.proc3829873.chain_2575,blat.proc3829873.chain_2576,blat.proc3829873.chain_2579,blat.proc3829873.chain_2580	4
scaffold_15	alt_acceptor	15414285	15414286	+	asmbl_14732,asmbl_14735,asmbl_14737	none	STRG.18922.6,blat.proc3829879.chain_3550,blat.proc3829879.chain_3557	3	STRG.18922.3,Trinity_GG_10387_c0_g1_i3,blat.proc3829879.chain_3553,blat.proc3829879.chain_3554	4
scaffold_2	spliced_intron	14278868	14278991	+	asmbl_24934	none	blat.proc3829871.chain_2543	1	blat.proc3829871.chain_2541,blat.proc3829871.chain_2545	2
scaffold_20	retained_exon	6134055	6134081	-	asmbl_26736	none	STRG.23206.1,blat.proc3829899.chain_167	2	STRG.23206.2,blat.proc3829899.chain_166	2
scaffold_1	alt_donor	11568004	11568005	-	asmbl_642,asmbl_645,asmbl_647	none	STRG.766.2,blat.proc3829887.chain_578,blat.proc3829887.chain_581	3	STRG.766.1,blat.proc3829887.chain_577,blat.proc3829887.chain_579,blat.proc3829887.chain_580	4
scaffold_17	alt_donor	8000313	8000314	+	asmbl_18060	none	STRG.20405.1,Trinity_GG_11131_c0_g1_i1	2	STRG.20405.2,Trinity_GG_11131_c0_g1_i2,blat.proc3829881.chain_1114	3
scaffold_2	alt_acceptor	17974189	17974190	+	asmbl_25242,asmbl_25244,asmbl_25246	none	STRG.2687.1,STRG.2687.2,blat.proc3829871.chain_2901,blat.proc3829871.chain_2903	4	blat.proc3829871.chain_2902	1
scaffold_25	alternate_exon	7206771	7206829	-	asmbl_34360	none	STRG.27559.2	1	STRG.27559.1,blat.proc3829901.chain_888	2
scaffold_16	ends_in_intron	1248205	1248205	-	asmbl_16112,asmbl_16113	none	STRG.19076.2,blat.proc3829897.chain_105	2	STRG.19076.1,blat.proc3829897.chain_106,blat.proc3829897.chain_107	3
scaffold_16	alt_donor	5958928	5958929	+	asmbl_17041,asmbl_17044	none	STRG.19319.2,STRG.19319.3	2	Trinity_GG_10571_c1_g1_i2,blat.proc3829881.chain_166,blat.proc3829881.chain_167	3
scaffold_2	alt_donor	14228597	14228598	-	asmbl_23602	none	STRG.2415.1	1	blat.proc3829887.chain_2295	1
scaffold_2	spliced_intron	9886597	9886832	-	asmbl_23416	none	blat.proc3829887.chain_2075	1	STRG.2191.1,blat.proc3829887.chain_2073,blat.proc3829887.chain_2074	3
scaffold_6	alt_donor	7937103	7937104	-	asmbl_48452	none	STRG.7666.3	1	STRG.7666.2,STRG.7666.4,blat.proc3829889.chain_3704	3
scaffold_25	alt_acceptor	4888621	4888622	+	asmbl_33543	none	STRG.27402.1,Trinity_GG_15074_c0_g1_i2,blat.proc3829885.chain_370	3	STRG.27402.2,Trinity_GG_15074_c0_g1_i1,blat.proc3829885.chain_369	3
scaffold_4	alt_donor	17503558	17503559	-	asmbl_42028	none	STRG.5337.1,blat.proc3829889.chain_1341	2	STRG.5337.2,blat.proc3829889.chain_1339	2
scaffold_2	alt_acceptor	16291999	16292000	+	asmbl_25144,asmbl_25145	none	STRG.2561.1,STRG.2561.2,blat.proc3829871.chain_2768,blat.proc3829871.chain_2769	4	Trinity_GG_1458_c0_g1_i3,blat.proc3829871.chain_2766	2
scaffold_15	starts_in_intron	8938862	8938862	-	asmbl_15383	none	blat.proc3829895.chain_3221	1	STRG.18430.1,blat.proc3829895.chain_3222	2
scaffold_9	alt_acceptor	12480611	12480612	-	asmbl_55341	none	STRG.11552.1,blat.proc3829891.chain_3683	2	STRG.11552.2	1
scaffold_28	starts_in_intron	4876414	4876414	-	asmbl_37550	none	Trinity_GG_33590_c0_g1_i4,blat.proc3829901.chain_2706	2	STRG.29625.1,Trinity_GG_33590_c0_g1_i3,blat.proc3829901.chain_2707	3
scaffold_13	retained_intron	12104495	12104834	+	asmbl_11314	none	STRG.16334.2,Trinity_GG_8989_c0_g1_i3,blat.proc3829879.chain_1101	3	Trinity_GG_8989_c0_g1_i5,blat.proc3829879.chain_1104	2
scaffold_6	alt_acceptor	14079493	14079494	+	asmbl_47506	none	STRG.8159.1,blat.proc3829875.chain_581	2	STRG.8159.2,blat.proc3829875.chain_580	2
scaffold_4	alt_acceptor	5652334	5652335	-	asmbl_41352,asmbl_41357,asmbl_41358,asmbl_41363,asmbl_41365,asmbl_41366,asmbl_41368,asmbl_41369	none	STRG.4469.2,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_604,blat.proc3829889.chain_606,blat.proc3829889.chain_608,blat.proc3829889.chain_611,blat.proc3829889.chain_612	8	STRG.4469.3,blat.proc3829889.chain_613	2
scaffold_14	spliced_intron	13899362	13899516	+	asmbl_12497	none	STRG.17653.2	1	STRG.17653.4,STRG.17653.5	2
scaffold_27	alt_donor	9435775	9435776	-	asmbl_37093	none	STRG.29170.1,blat.proc3829901.chain_2276	2	STRG.29170.4,Trinity_GG_33337_c0_g1_i3,blat.proc3829901.chain_2274	3
scaffold_2	retained_intron	15872204	15872339	-	asmbl_23676	none	blat.proc3829887.chain_2389	1	blat.proc3829887.chain_2388,blat.proc3829887.chain_2391	2
scaffold_11	starts_in_intron	11776048	11776048	-	asmbl_7006	none	blat.proc3829893.chain_2491	1	STRG.14084.1,blat.proc3829893.chain_2492	2
scaffold_2	starts_in_intron	14556484	14556484	+	asmbl_24986	none	STRG.2454.4	1	STRG.2454.1,STRG.2454.2,STRG.2454.3	3
scaffold_1	ends_in_intron	6974085	6974085	+	asmbl_1862	none	blat.proc3829871.chain_550	1	STRG.488.1,blat.proc3829871.chain_552,blat.proc3829871.chain_553	3
scaffold_13	retained_intron	3264232	3264348	+	asmbl_10659,asmbl_10660	none	blat.proc3829879.chain_335,blat.proc3829879.chain_337	2	STRG.15620.1,blat.proc3829879.chain_336	2
scaffold_18	retained_intron	8372775	8373987	-	asmbl_20035	none	STRG.21500.1,blat.proc3829897.chain_2273	2	STRG.21500.2,STRG.21500.3	2
scaffold_17	spliced_intron	10048773	10050113	+	asmbl_18287	none	STRG.20609.2,blat.proc3829881.chain_1432	2	STRG.20609.3,Trinity_GG_11293_c0_g1_i1,Trinity_GG_11293_c1_g1_i1,blat.proc3829881.chain_1433,blat.proc3829881.chain_1434	5
scaffold_13	alt_donor	15363548	15363549	+	asmbl_11475	none	STRG.16566.1,Trinity_GG_9120_c0_g1_i4,blat.proc3829879.chain_1299	3	Trinity_GG_9120_c0_g1_i3,blat.proc3829879.chain_1298	2
scaffold_11	alternate_exon	4673294	4676947	-	asmbl_6591	none	blat.proc3829893.chain_1971	1	Trinity_GG_24574_c0_g1_i1,blat.proc3829893.chain_1974	2
scaffold_13	spliced_intron	16190374	16190412	-	asmbl_10251	none	STRG.16653.2	1	Trinity_GG_26290_c1_g1_i1,blat.proc3829895.chain_1286	2
scaffold_5	retained_intron	7711197	7711308	-	asmbl_45571,asmbl_45572	none	STRG.6143.1,STRG.6143.2,blat.proc3829889.chain_2233	3	blat.proc3829889.chain_2234	1
scaffold_12	retained_intron	7499766	7499934	-	asmbl_7717	none	STRG.14811.1,blat.proc3829893.chain_3194	2	STRG.14811.3,blat.proc3829893.chain_3195	2
scaffold_16	alt_acceptor	1110323	1110324	-	asmbl_16097	none	STRG.19063.2	1	STRG.19063.1	1
scaffold_20	retained_intron	8129531	8130806	+	asmbl_25901	none	STRG.23344.1,Trinity_GG_12816_c0_g1_i1,Trinity_GG_12816_c0_g1_i3,Trinity_GG_12816_c1_g1_i1,blat.proc3829883.chain_339,blat.proc3829883.chain_340,blat.proc3829883.chain_341	7	blat.proc3829883.chain_338	1
scaffold_12	spliced_intron	14123813	14123946	-	asmbl_8119,asmbl_8120,asmbl_8122	none	STRG.15232.1,blat.proc3829893.chain_3707,blat.proc3829893.chain_3709	3	STRG.15232.2,Trinity_GG_25557_c0_g1_i2,blat.proc3829893.chain_3706	3
scaffold_19	alt_donor	9556127	9556128	-	asmbl_21549	none	STRG.22378.2,blat.proc3829897.chain_3093	2	STRG.22378.1,blat.proc3829897.chain_3092	2
scaffold_5	ends_in_intron	9095569	9095569	+	asmbl_44273	none	blat.proc3829873.chain_2406	1	STRG.6239.1,blat.proc3829873.chain_2405,blat.proc3829873.chain_2407	3
scaffold_11	alternate_exon	4751421	4751642	+	asmbl_5477	none	STRG.13563.1,blat.proc3829877.chain_2010	2	blat.proc3829877.chain_2008	1
scaffold_14	alternate_exon	7259122	7260570	-	asmbl_13165	none	STRG.17147.2	1	STRG.17147.1	1
scaffold_2	alt_donor	16403308	16403309	+	asmbl_25171,asmbl_25172	none	STRG.2580.1,blat.proc3829871.chain_2790,blat.proc3829871.chain_2791	3	blat.proc3829871.chain_2793	1
scaffold_17	alt_donor	1292421	1292422	-	asmbl_18727,asmbl_18729	none	STRG.19952.3,blat.proc3829897.chain_836,blat.proc3829897.chain_838	3	STRG.19952.1,STRG.19952.4,blat.proc3829897.chain_840,blat.proc3829897.chain_843	4
scaffold_25	ends_in_intron	5996028	5996028	-	asmbl_34271	none	Trinity_GG_32373_c1_g1_i1,blat.proc3829901.chain_714	2	STRG.27469.1,STRG.27469.2	2
scaffold_25	alt_acceptor	8442376	8442377	-	asmbl_34416	none	STRG.27660.2	1	STRG.27660.1,blat.proc3829901.chain_906	2
scaffold_23	alt_acceptor	2164190	2164191	-	asmbl_31418,asmbl_31419,asmbl_31422	none	STRG.25669.1,STRG.25669.4,STRG.25669.7	3	STRG.25669.3,STRG.25669.5,STRG.25669.6	3
scaffold_7	ends_in_intron	1468149	1468149	-	asmbl_49552	none	Trinity_GG_21957_c0_g1_i3,blat.proc3829891.chain_1025	2	STRG.8637.1,STRG.8637.2,blat.proc3829891.chain_1024	3
scaffold_10	alt_donor	9375597	9375598	+	asmbl_4649	none	blat.proc3829877.chain_1199	1	STRG.12680.1	1
scaffold_9	retained_intron	9736024	9736448	+	asmbl_54228,asmbl_54230	none	STRG.11341.3,STRG.11341.5,blat.proc3829877.chain_148,blat.proc3829877.chain_150,blat.proc3829877.chain_152	5	STRG.11341.4,blat.proc3829877.chain_145,blat.proc3829877.chain_151,blat.proc3829877.chain_153	4
scaffold_12	alt_donor	14283899	14283900	+	asmbl_9056	none	blat.proc3829877.chain_3709	1	STRG.15247.1,blat.proc3829877.chain_3710	2
scaffold_5	spliced_intron	10534403	10534505	-	asmbl_45744	none	STRG.6332.3,blat.proc3829889.chain_2349	2	STRG.6332.1,blat.proc3829889.chain_2347	2
scaffold_6	starts_in_intron	17796363	17796363	-	asmbl_49134	none	Trinity_GG_21797_c1_g1_i1,blat.proc3829891.chain_714	2	STRG.8455.1,STRG.8455.2,blat.proc3829891.chain_711,blat.proc3829891.chain_712,blat.proc3829891.chain_713	5
scaffold_3	starts_in_intron	2872434	2872434	+	asmbl_39879	none	Trinity_GG_1713_c0_g1_i3,blat.proc3829871.chain_3199	2	STRG.3044.1,blat.proc3829871.chain_3197	2
scaffold_4	alt_donor	16706027	16706028	-	asmbl_41956	none	STRG.5250.2,blat.proc3829889.chain_1308	2	STRG.5250.1,blat.proc3829889.chain_1309	2
scaffold_21	starts_in_intron	5545510	5545510	+	asmbl_28596	none	STRG.24076.2,blat.proc3829883.chain_1235	2	STRG.24076.1,blat.proc3829883.chain_1234,blat.proc3829883.chain_1236	3
scaffold_11	alternate_exon	8472569	8478871	+	asmbl_5746	none	STRG.13851.1,Trinity_GG_7647_c0_g1_i5,Trinity_GG_7647_c1_g1_i1,blat.proc3829877.chain_2362,blat.proc3829877.chain_2364	5	Trinity_GG_7647_c0_g1_i3,blat.proc3829877.chain_2363	2
scaffold_6	alternate_exon	2852824	2854552	-	asmbl_48119	none	STRG.7274.2	1	STRG.7274.1,blat.proc3829889.chain_3268	2
scaffold_8	retained_intron	6160014	6160658	-	asmbl_52854,asmbl_52857,asmbl_52858	none	STRG.10012.3,blat.proc3829891.chain_2213,blat.proc3829891.chain_2216,blat.proc3829891.chain_2218	4	STRG.10012.1,Trinity_GG_22628_c0_g1_i1,blat.proc3829891.chain_2214	3
scaffold_18	alt_acceptor	9790630	9790631	+	asmbl_20916,asmbl_20917	none	STRG.21576.1,STRG.21576.2,blat.proc3829881.chain_2541	3	STRG.21576.3	1
scaffold_144	alt_acceptor	9766	9767	-	asmbl_13865	none	STRG.30163.2	1	STRG.30163.1	1
scaffold_3	alt_donor	589564	589565	+	asmbl_39766	none	STRG.2898.2,blat.proc3829871.chain_3066	2	STRG.2898.1	1
scaffold_7	retained_exon	13960540	13960664	+	asmbl_51275	none	STRG.9485.2,Trinity_GG_5272_c0_g1_i1,blat.proc3829875.chain_1951	3	blat.proc3829875.chain_1953	1
scaffold_8	ends_in_intron	10240525	10240525	+	asmbl_52150	none	STRG.10282.3,blat.proc3829875.chain_2794	2	STRG.10282.1,STRG.10282.2,blat.proc3829875.chain_2790,blat.proc3829875.chain_2791,blat.proc3829875.chain_2792	5
scaffold_17	spliced_intron	2719992	2720105	+	asmbl_17823	none	STRG.20056.1	1	STRG.20056.2,Trinity_GG_10966_c0_g1_i2,blat.proc3829881.chain_843	3
scaffold_7	retained_intron	15272158	15272574	+	asmbl_51311,asmbl_51312,asmbl_51315,asmbl_51317	none	STRG.9532.2,STRG.9532.3,blat.proc3829875.chain_1981,blat.proc3829875.chain_1985	4	STRG.9532.1,STRG.9532.4,blat.proc3829875.chain_1982,blat.proc3829875.chain_1984,blat.proc3829875.chain_1986,blat.proc3829875.chain_1987	6
scaffold_5	alt_donor	7408024	7408025	-	asmbl_45558	none	STRG.6135.1	1	STRG.6135.2,STRG.6135.3	2
scaffold_18	alt_acceptor	9170107	9170108	+	asmbl_20905	none	Trinity_GG_11916_c0_g1_i1,blat.proc3829881.chain_2538	2	STRG.21549.2,STRG.21549.3,Trinity_GG_11916_c0_g1_i2,blat.proc3829881.chain_2540	4
scaffold_10	starts_in_intron	9469353	9469353	+	asmbl_4662	none	blat.proc3829877.chain_1238	1	STRG.12681.1,STRG.12681.2,blat.proc3829877.chain_1239	3
scaffold_7	spliced_intron	5927708	5928006	+	asmbl_50713,asmbl_50714	none	STRG.8891.1,Trinity_GG_4833_c0_g1_i1,Trinity_GG_4833_c0_g1_i4,blat.proc3829875.chain_1203,blat.proc3829875.chain_1204	5	blat.proc3829875.chain_1202	1
scaffold_8	ends_in_intron	9109843	9109843	+	asmbl_52037	none	blat.proc3829875.chain_2601	1	STRG.10158.1,blat.proc3829875.chain_2599	2
scaffold_16	alt_acceptor	11398452	11398453	-	asmbl_16524	none	STRG.19663.5	1	STRG.19663.4,blat.proc3829897.chain_606	2
scaffold_4	retained_intron	15379460	15379630	-	asmbl_41842	none	STRG.5131.2,Trinity_GG_19846_c0_g1_i1,blat.proc3829889.chain_1143	3	STRG.5131.1,blat.proc3829889.chain_1142	2
scaffold_28	alt_acceptor	1649350	1649351	-	asmbl_37324	none	STRG.29336.2	1	STRG.29336.1	1
scaffold_14	alt_acceptor	7234267	7234268	-	asmbl_13164	none	STRG.17139.3,blat.proc3829895.chain_1831	2	STRG.17139.1,STRG.17139.2,blat.proc3829895.chain_1832	3
scaffold_14	spliced_intron	11572188	11573625	-	asmbl_13480,asmbl_13487	none	STRG.17490.1,STRG.17490.4,blat.proc3829895.chain_2172,blat.proc3829895.chain_2179	4	STRG.17490.2,STRG.17490.3,Trinity_GG_26806_c0_g1_i8	3
scaffold_28	alt_donor	293837	293838	+	asmbl_37961	none	STRG.29243.1,blat.proc3829885.chain_2399	2	STRG.29243.2,blat.proc3829885.chain_2398	2
scaffold_10	alt_acceptor	5812208	5812209	+	asmbl_4482,asmbl_4483	none	STRG.12394.1,STRG.12394.2,blat.proc3829877.chain_1035,blat.proc3829877.chain_1036	4	STRG.12394.3,blat.proc3829877.chain_1034	2
scaffold_19	spliced_intron	11475869	11475988	-	asmbl_21608	none	STRG.22467.3	1	STRG.22467.1,STRG.22467.2	2
scaffold_5	alt_donor	6004086	6004087	-	asmbl_45464	none	blat.proc3829889.chain_2099	1	STRG.6009.1,blat.proc3829889.chain_2100	2
scaffold_6	retained_intron	5752777	5753623	+	asmbl_46915	none	STRG.7525.1,Trinity_GG_4120_c0_g1_i1,blat.proc3829873.chain_3646	3	STRG.7525.2,blat.proc3829873.chain_3644,blat.proc3829873.chain_3645,blat.proc3829873.chain_3647	4
scaffold_8	alt_donor	2662517	2662518	+	asmbl_51717	none	STRG.9797.2,Trinity_GG_5400_c0_g1_i1,blat.proc3829875.chain_2208	3	STRG.9797.1,Trinity_GG_5400_c0_g1_i2,blat.proc3829875.chain_2207	3
scaffold_13	alt_donor	2480231	2480232	-	asmbl_9420	none	STRG.15539.1,blat.proc3829895.chain_299	2	STRG.15539.2,blat.proc3829895.chain_297	2
scaffold_3	skipped_exon	13422664	13424557	-	asmbl_39216	none	STRG.3690.4	1	STRG.3690.2,STRG.3690.3,STRG.3690.5	3
scaffold_18	retained_intron	4690186	4690277	+	asmbl_20573	none	Trinity_GG_11701_c0_g1_i1,blat.proc3829881.chain_2136	2	STRG.21247.1,STRG.21247.2	2
scaffold_7	starts_in_intron	1447690	1447690	-	asmbl_49543	none	blat.proc3829891.chain_1034	1	STRG.8632.1,STRG.8632.2	2
scaffold_13	alt_donor	3330931	3330932	-	asmbl_9492	none	STRG.15627.2,blat.proc3829895.chain_382	2	STRG.15627.1,blat.proc3829895.chain_383	2
scaffold_11	alternate_exon	11637327	11637422	+	asmbl_5952	none	blat.proc3829877.chain_2573	1	STRG.14080.1,blat.proc3829877.chain_2568,blat.proc3829877.chain_2570,blat.proc3829877.chain_2572	4
scaffold_17	starts_in_intron	13464606	13464606	+	asmbl_18449	none	Trinity_GG_11441_c0_g1_i3,blat.proc3829881.chain_1664	2	STRG.20812.1,blat.proc3829881.chain_1662	2
scaffold_19	spliced_intron	8805742	8805817	+	asmbl_22360	none	STRG.22319.2	1	STRG.22319.3	1
scaffold_6	starts_in_intron	17504191	17504191	-	asmbl_49127	none	Trinity_GG_21822_c1_g1_i1	1	blat.proc3829891.chain_754	1
scaffold_1	retained_intron	17729072	17729199	+	asmbl_2517	none	blat.proc3829871.chain_1306	1	STRG.1242.2	1
scaffold_25	alt_donor	3612869	3612870	-	asmbl_34125	none	STRG.27287.2	1	STRG.27287.1,blat.proc3829901.chain_601,blat.proc3829901.chain_602	3
scaffold_5	retained_exon	9649907	9649963	+	asmbl_44289	none	STRG.6270.2,blat.proc3829873.chain_2368	2	STRG.6270.1,blat.proc3829873.chain_2367	2
scaffold_9	alt_acceptor	75742	75743	-	asmbl_54770	none	STRG.10759.1,blat.proc3829891.chain_2966	2	STRG.10759.2	1
scaffold_4	starts_in_intron	6675204	6675204	-	asmbl_41432,asmbl_41433	none	STRG.4523.2,STRG.4523.3,blat.proc3829889.chain_691	3	STRG.4523.1,blat.proc3829889.chain_692	2
scaffold_28	alt_donor	9407993	9407994	+	asmbl_38475	none	STRG.29949.2,blat.proc3829885.chain_3026	2	STRG.29949.1,blat.proc3829885.chain_3027	2
scaffold_14	retained_intron	3097650	3097893	+	asmbl_11873	none	blat.proc3829879.chain_1617	1	STRG.16888.1,blat.proc3829879.chain_1619	2
scaffold_11	spliced_intron	932741	932796	+	asmbl_5276	none	STRG.13279.2	1	STRG.13279.1,blat.proc3829877.chain_1799	2
scaffold_9	spliced_intron	9853052	9854248	+	asmbl_54253	none	STRG.11344.3	1	STRG.11344.2,Trinity_GG_6307_c0_g1_i5,blat.proc3829877.chain_64,blat.proc3829877.chain_66	4
scaffold_26	ends_in_intron	5380831	5380831	-	asmbl_34883	none	Trinity_GG_32766_c0_g1_i2,blat.proc3829901.chain_1345	2	STRG.28224.1,blat.proc3829901.chain_1347	2
scaffold_1	ends_in_intron	5963894	5963894	+	asmbl_1798	none	blat.proc3829871.chain_456	1	STRG.396.1,STRG.396.2,STRG.396.3,blat.proc3829871.chain_454	4
scaffold_20	alt_acceptor	11672378	11672379	-	asmbl_27100	none	STRG.23656.2,blat.proc3829899.chain_654	2	STRG.23656.1,blat.proc3829899.chain_652	2
scaffold_14	retained_intron	2919342	2919421	-	asmbl_12972	none	blat.proc3829895.chain_1605	1	STRG.16879.1,blat.proc3829895.chain_1604	2
scaffold_6	starts_in_intron	13574606	13574606	-	asmbl_48853	none	blat.proc3829891.chain_417	1	STRG.8093.2,STRG.8093.3,STRG.8093.4,Trinity_GG_21620_c1_g1_i1,blat.proc3829891.chain_414,blat.proc3829891.chain_416	6
scaffold_1	skipped_exon	5731295	5731676	-	asmbl_296	none	Trinity_GG_17221_c0_g1_i4,blat.proc3829887.chain_258	2	STRG.379.1,STRG.379.2,blat.proc3829887.chain_257,blat.proc3829887.chain_259,blat.proc3829887.chain_260	5
scaffold_10	ends_in_intron	726688	726688	-	asmbl_2911	none	Trinity_GG_23649_c0_g1_i1,blat.proc3829893.chain_373	2	STRG.11940.1	1
scaffold_5	spliced_intron	14125735	14126570	+	asmbl_44574	none	blat.proc3829873.chain_2717	1	Trinity_GG_3590_c2_g1_i1,blat.proc3829873.chain_2716	2
scaffold_9	starts_in_intron	9706341	9706341	+	asmbl_54213	none	Trinity_GG_6324_c1_g2_i1,blat.proc3829877.chain_116	2	STRG.11336.1,STRG.11336.3,Trinity_GG_6324_c1_g1_i1,blat.proc3829877.chain_110,blat.proc3829877.chain_111,blat.proc3829877.chain_114	6
scaffold_21	skipped_exon	10173673	10174804	-	asmbl_28038	none	STRG.24469.2	1	STRG.24469.1	1
scaffold_8	spliced_intron	10484487	10484569	+	asmbl_52160	none	STRG.10277.1,blat.proc3829875.chain_2786	2	blat.proc3829875.chain_2784	1
scaffold_2	retained_intron	6640625	6640693	-	asmbl_23245	none	blat.proc3829887.chain_1947	1	STRG.2025.1,STRG.2025.2,STRG.2025.3,blat.proc3829887.chain_1945,blat.proc3829887.chain_1946,blat.proc3829887.chain_1948	6
scaffold_17	alternate_exon	787989	788272	+	asmbl_17703	none	blat.proc3829881.chain_713	1	STRG.19917.1	1
scaffold_15	retained_intron	7437135	7437261	-	asmbl_15318	none	STRG.18330.3,Trinity_GG_27324_c1_g1_i2,blat.proc3829895.chain_3101	3	STRG.18330.2,blat.proc3829895.chain_3102	2
scaffold_1	ends_in_intron	858134	858134	-	asmbl_28	none	blat.proc3829885.chain_3697	1	STRG.43.1,STRG.43.2,blat.proc3829885.chain_3698,blat.proc3829885.chain_3699,blat.proc3829885.chain_3700	5
scaffold_7	starts_in_intron	13454354	13454354	+	asmbl_51224	none	Trinity_GG_5215_c0_g1_i2	1	STRG.9434.1,Trinity_GG_5215_c0_g1_i1	2
scaffold_12	alt_acceptor	6426744	6426745	-	asmbl_7665,asmbl_7666,asmbl_7667,asmbl_7668	none	STRG.14731.1,STRG.14731.2,STRG.14731.3,blat.proc3829893.chain_3149,blat.proc3829893.chain_3150,blat.proc3829893.chain_3151	6	STRG.14731.5,Trinity_GG_25243_c1_g1_i1,blat.proc3829893.chain_3152	3
scaffold_14	retained_intron	1127545	1127620	+	asmbl_11782	none	STRG.16758.2,Trinity_GG_9190_c0_g1_i1,blat.proc3829879.chain_1416	3	STRG.16758.1,Trinity_GG_9190_c0_g1_i2,blat.proc3829879.chain_1417	3
scaffold_28	skipped_exon	7234548	7235090	+	asmbl_38339	none	STRG.29763.1,blat.proc3829885.chain_2858	2	blat.proc3829885.chain_2856	1
scaffold_6	spliced_intron	796568	796819	-	asmbl_48012,asmbl_48014	none	STRG.7133.1,blat.proc3829889.chain_3127	2	STRG.7133.2,STRG.7133.3,blat.proc3829889.chain_3126	3
scaffold_2	retained_exon	13445854	13446506	-	asmbl_23530,asmbl_23532	none	STRG.2365.1,blat.proc3829887.chain_2214,blat.proc3829887.chain_2216	3	blat.proc3829887.chain_2217	1
scaffold_28	starts_in_intron	3927592	3927592	+	asmbl_38197	none	Trinity_GG_16378_c0_g2_i1,blat.proc3829885.chain_2654	2	STRG.29574.1,blat.proc3829885.chain_2653	2
scaffold_10	ends_in_intron	8319261	8319261	-	asmbl_3491	none	Trinity_GG_24044_c1_g1_i1	1	STRG.12583.1,STRG.12583.2	2
scaffold_20	alt_donor	2765472	2765473	-	asmbl_26596,asmbl_26597	none	STRG.23004.4,STRG.23004.5	2	STRG.23004.6	1
scaffold_6	ends_in_intron	18370723	18370723	-	asmbl_49178	none	Trinity_GG_21858_c0_g1_i2,blat.proc3829891.chain_812	2	STRG.8500.1,Trinity_GG_21858_c0_g1_i1,blat.proc3829891.chain_813	3
scaffold_20	alternate_exon	11774945	11776583	-	asmbl_27122	none	STRG.23671.1,Trinity_GG_30187_c0_g1_i2,blat.proc3829899.chain_670	3	STRG.23671.3,Trinity_GG_30187_c0_g1_i1,blat.proc3829899.chain_669	3
scaffold_11	alt_donor	4751476	4751477	+	asmbl_5478	none	STRG.13563.2	1	STRG.13563.1,blat.proc3829877.chain_2010	2
scaffold_9	spliced_intron	16560431	16561320	-	asmbl_55549	none	STRG.11797.5	1	STRG.11797.2,STRG.11797.3,STRG.11797.6,Trinity_GG_23481_c0_g2_i1,blat.proc3829893.chain_82	5
scaffold_19	retained_exon	12317592	12317693	+	asmbl_22582	none	STRG.22553.1,blat.proc3829881.chain_3509	2	STRG.22553.2,blat.proc3829881.chain_3508	2
scaffold_15	skipped_exon	15409801	15410185	+	asmbl_14722	none	STRG.18921.8	1	STRG.18921.2,STRG.18921.3,STRG.18921.9,blat.proc3829879.chain_3515,blat.proc3829879.chain_3517	5
scaffold_24	skipped_exon	6831669	6833623	+	asmbl_32358	none	STRG.26717.4	1	STRG.26717.1,STRG.26717.2,blat.proc3829883.chain_3657,blat.proc3829883.chain_3660,blat.proc3829883.chain_3661,blat.proc3829883.chain_3662	6
scaffold_7	alternate_exon	17990672	17990844	+	asmbl_51394	none	STRG.9629.2,blat.proc3829875.chain_2082	2	STRG.9629.3	1
scaffold_1	starts_in_intron	17670294	17670294	-	asmbl_1057	none	blat.proc3829887.chain_1127	1	STRG.1235.1,blat.proc3829887.chain_1126	2
scaffold_11	alternate_exon	8045471	8045670	+	asmbl_5673	none	STRG.13797.1,Trinity_GG_7599_c0_g1_i1,blat.proc3829877.chain_2272	3	STRG.13797.2	1
scaffold_1	spliced_intron	16095601	16095685	-	asmbl_978	none	blat.proc3829887.chain_1025	1	STRG.1128.2,blat.proc3829887.chain_1023	2
scaffold_9	spliced_intron	5283686	5284698	+	asmbl_54008	none	STRG.11103.3,blat.proc3829875.chain_3572	2	STRG.11103.1,STRG.11103.2,blat.proc3829875.chain_3571,blat.proc3829875.chain_3573,blat.proc3829875.chain_3574,blat.proc3829875.chain_3576	6
scaffold_21	skipped_exon	233295	234074	-	asmbl_27309	none	STRG.23713.2,Trinity_GG_30226_c0_g1_i3,blat.proc3829899.chain_761	3	STRG.23713.1,Trinity_GG_30226_c0_g1_i2,blat.proc3829899.chain_760	3
scaffold_1	retained_exon	9516511	9516577	-	asmbl_548,asmbl_549	none	STRG.644.3,blat.proc3829887.chain_520,blat.proc3829887.chain_521	3	STRG.644.1	1
scaffold_14	spliced_intron	3240126	3240355	+	asmbl_11902,asmbl_11903,asmbl_11908	none	STRG.16901.1,STRG.16901.2,blat.proc3829879.chain_1550,blat.proc3829879.chain_1551,blat.proc3829879.chain_1553	5	blat.proc3829879.chain_1549	1
scaffold_4	retained_exon	16371629	16371682	-	asmbl_41911	none	STRG.5207.1,blat.proc3829889.chain_1247	2	STRG.5207.2	1
scaffold_13	spliced_intron	4602805	4604926	-	asmbl_9606,asmbl_9610	none	STRG.15781.1,Trinity_GG_25880_c0_g1_i1,blat.proc3829895.chain_530	3	STRG.15781.2,Trinity_GG_25880_c0_g3_i1,blat.proc3829895.chain_531	3
scaffold_14	spliced_intron	8755233	8755448	-	asmbl_13326	none	blat.proc3829895.chain_1957	1	STRG.17300.1,STRG.17300.2	2
scaffold_12	spliced_intron	15013574	15013828	-	asmbl_8165,asmbl_8166,asmbl_8167,asmbl_8168	none	STRG.15285.1,STRG.15285.2,blat.proc3829893.chain_3727,blat.proc3829893.chain_3728,blat.proc3829893.chain_3729,blat.proc3829893.chain_3730	6	blat.proc3829893.chain_3731	1
scaffold_21	spliced_intron	11964407	11964472	-	asmbl_28165	none	STRG.24636.1	1	Trinity_GG_30782_c0_g1_i1,blat.proc3829899.chain_1757	2
scaffold_12	skipped_exon	4201205	4201733	-	asmbl_7518	none	STRG.14586.2	1	STRG.14586.1,blat.proc3829893.chain_2948	2
scaffold_19	spliced_intron	10820688	10821270	+	asmbl_22464	none	STRG.22410.1,Trinity_GG_12375_c0_g1_i3,blat.proc3829881.chain_3323	3	STRG.22410.2,blat.proc3829881.chain_3324	2
scaffold_8	skipped_exon	14212489	14213428	-	asmbl_53308	none	STRG.10513.1	1	STRG.10513.2,blat.proc3829891.chain_2646	2
scaffold_14	starts_in_intron	16125574	16125574	-	asmbl_13756	none	blat.proc3829895.chain_2533	1	STRG.17844.1,blat.proc3829891.chain_1052,blat.proc3829895.chain_2534,blat.proc3829895.chain_2535	4
scaffold_13	spliced_intron	5208212	5208649	+	asmbl_10811	none	STRG.15811.1,Trinity_GG_8694_c0_g1_i1,blat.proc3829879.chain_502	3	STRG.15811.2,Trinity_GG_8694_c0_g1_i2,blat.proc3829879.chain_503	3
scaffold_12	starts_in_intron	12288343	12288343	-	asmbl_7987	none	blat.proc3829893.chain_3461	1	STRG.15114.2,STRG.15114.3,STRG.15114.4,STRG.15114.5,STRG.15114.6	5
scaffold_2	alt_donor	17971245	17971246	+	asmbl_25246	none	STRG.2687.2	1	STRG.2687.1,blat.proc3829871.chain_2900,blat.proc3829871.chain_2901,blat.proc3829871.chain_2902,blat.proc3829871.chain_2903	5
scaffold_28	alternate_exon	5230824	5230887	-	asmbl_37582	none	Trinity_GG_33578_c0_g1_i9,blat.proc3829901.chain_2674	2	STRG.29650.1,blat.proc3829901.chain_2671,blat.proc3829901.chain_2672	3
scaffold_21	retained_intron	2614872	2614971	+	asmbl_28433	none	blat.proc3829883.chain_1043	1	STRG.23883.1,blat.proc3829883.chain_1044	2
scaffold_12	spliced_intron	9071332	9071490	+	asmbl_8816	none	STRG.14900.1,Trinity_GG_8217_c0_g1_i1,blat.proc3829877.chain_3369	3	Trinity_GG_8217_c0_g1_i4,blat.proc3829877.chain_3370	2
scaffold_13	spliced_intron	530723	531277	-	asmbl_9321	none	STRG.15435.2	1	STRG.15435.1,Trinity_GG_25671_c0_g1_i1,blat.proc3829895.chain_182	3
scaffold_13	spliced_intron	274732	275404	+	asmbl_10435	none	STRG.15416.2,blat.proc3829879.chain_124	2	STRG.15416.1,blat.proc3829879.chain_125	2
scaffold_8	ends_in_intron	14389221	14389221	-	asmbl_53314	none	Trinity_GG_22854_c0_g1_i6,blat.proc3829891.chain_2661	2	STRG.10517.1,STRG.10517.2,blat.proc3829891.chain_2657,blat.proc3829891.chain_2658,blat.proc3829891.chain_2659,blat.proc3829891.chain_2660	6
scaffold_2	retained_intron	16403504	16403585	+	asmbl_25172	none	blat.proc3829871.chain_2791	1	STRG.2580.1,blat.proc3829871.chain_2790	2
scaffold_16	alternate_exon	3704892	3706315	+	asmbl_16937	none	STRG.19166.2	1	blat.proc3829881.chain_33	1
scaffold_24	alt_donor	1946131	1946132	-	asmbl_32744,asmbl_32745	none	STRG.26401.1,STRG.26401.2	2	STRG.26401.4	1
scaffold_6	skipped_exon	13249787	13250829	-	asmbl_48839	none	STRG.8078.2	1	STRG.8078.1	1
scaffold_10	alternate_exon	10779347	10779420	+	asmbl_4710,asmbl_4711	none	STRG.12755.1,STRG.12755.2	2	STRG.12755.3	1
scaffold_21	alt_donor	1300298	1300299	-	asmbl_27432,asmbl_27433	none	STRG.23801.1,Trinity_GG_30279_c0_g1_i1,blat.proc3829899.chain_876	3	STRG.23801.3,Trinity_GG_30279_c0_g1_i2,blat.proc3829899.chain_875	3
scaffold_12	spliced_intron	9236297	9236367	-	asmbl_7792,asmbl_7795,asmbl_7796,asmbl_7797	none	STRG.14912.4,STRG.14912.5,STRG.14912.7,blat.proc3829893.chain_3298	4	STRG.14912.6,STRG.14912.8,blat.proc3829893.chain_3300,blat.proc3829893.chain_3304,blat.proc3829893.chain_3305	5
scaffold_9	alt_acceptor	18390505	18390506	+	asmbl_54638	none	STRG.11879.3	1	STRG.11879.1,blat.proc3829877.chain_595	2
scaffold_10	alternate_exon	12798393	12798453	-	asmbl_3731	none	STRG.12855.3	1	STRG.12855.2,blat.proc3829893.chain_1360	2
scaffold_3	ends_in_intron	1170072	1170072	+	asmbl_39789	none	blat.proc3829871.chain_3111	1	STRG.2936.1,blat.proc3829871.chain_3112	2
scaffold_13	spliced_intron	2359851	2360242	+	asmbl_10563,asmbl_10575,asmbl_10576,asmbl_10580,asmbl_10581,asmbl_10582,asmbl_10583,asmbl_10584,asmbl_10585,asmbl_10588,asmbl_10590,asmbl_10591	none	STRG.15543.12,STRG.15543.3,STRG.15543.6,STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161	12	Trinity_GG_8511_c0_g1_i12,blat.proc3829879.chain_153	2
scaffold_6	alt_acceptor	14079490	14079491	+	asmbl_47507,asmbl_47508	none	STRG.8159.2,blat.proc3829875.chain_580	2	STRG.8159.1,blat.proc3829875.chain_581	2
scaffold_15	retained_intron	11940228	11941598	-	asmbl_15558	none	blat.proc3829895.chain_3338	1	STRG.18626.2,blat.proc3829895.chain_3337	2
scaffold_15	alt_donor	15355053	15355054	+	asmbl_14705,asmbl_14711	none	STRG.18909.2,blat.proc3829879.chain_3499,blat.proc3829879.chain_3504	3	STRG.18909.3,Trinity_GG_10368_c0_g1_i7,blat.proc3829879.chain_3500,blat.proc3829879.chain_3505	4
scaffold_13	spliced_intron	3734461	3734554	+	asmbl_10713,asmbl_10714,asmbl_10716,asmbl_10717	none	STRG.15686.1,STRG.15686.2,blat.proc3829879.chain_389,blat.proc3829879.chain_393,blat.proc3829879.chain_394	5	STRG.15686.3,Trinity_GG_8631_c0_g1_i8,blat.proc3829879.chain_390	3
scaffold_14	spliced_intron	11759003	11759212	-	asmbl_13515	none	STRG.17517.2,Trinity_GG_26842_c0_g1_i1,blat.proc3829895.chain_2239	3	STRG.17517.1,STRG.17517.3,Trinity_GG_26842_c0_g1_i2,blat.proc3829895.chain_2238	4
scaffold_10	alternate_exon	7605118	7605191	-	asmbl_3461	none	STRG.12545.2,blat.proc3829893.chain_972	2	STRG.12545.1,STRG.12545.3,blat.proc3829893.chain_971	3
scaffold_2	ends_in_intron	10654858	10654858	+	asmbl_24748	none	blat.proc3829871.chain_2319	1	STRG.2226.1,blat.proc3829871.chain_2320	2
scaffold_10	alt_acceptor	979069	979070	-	asmbl_2940,asmbl_2942	none	STRG.11980.2,STRG.11980.3,blat.proc3829893.chain_423	3	STRG.11980.1	1
scaffold_26	retained_intron	5795098	5795276	-	asmbl_34903	none	STRG.28259.2	1	STRG.28259.1	1
scaffold_21	retained_exon	6392213	6392242	+	asmbl_28654,asmbl_28655	none	blat.proc3829883.chain_1200,blat.proc3829883.chain_1201	2	STRG.24152.1,blat.proc3829883.chain_1199	2
scaffold_9	retained_intron	17469882	17470146	-	asmbl_55610	none	STRG.11832.1,blat.proc3829893.chain_239	2	STRG.11832.3,blat.proc3829893.chain_238	2
scaffold_5	retained_exon	236514	236612	-	asmbl_45152	none	STRG.5594.3	1	STRG.5594.1,Trinity_GG_20172_c0_g1_i1,blat.proc3829889.chain_1710	3
scaffold_14	alt_acceptor	405203	405204	+	asmbl_11729	none	STRG.16722.6	1	STRG.16722.7,Trinity_GG_9219_c0_g1_i17,blat.proc3829879.chain_1472	3
scaffold_7	retained_intron	12412171	12412608	+	asmbl_51136,asmbl_51137	none	STRG.9333.1,Trinity_GG_5182_c0_g1_i2,Trinity_GG_5182_c0_g1_i3,blat.proc3829875.chain_1791,blat.proc3829875.chain_1792	5	STRG.9333.2,Trinity_GG_5182_c0_g1_i1,blat.proc3829875.chain_1790	3
scaffold_723	starts_in_intron	2558	2558	-	asmbl_51573	none	blat.proc3829901.chain_3465	1	STRG.30418.1,blat.proc3829901.chain_3463,blat.proc3829901.chain_3464	3
scaffold_22	starts_in_intron	5984819	5984819	-	asmbl_30068	none	STRG.24932.4	1	STRG.24932.2,STRG.24932.3	2
scaffold_11	alt_acceptor	6712073	6712074	-	asmbl_6712,asmbl_6713,asmbl_6717	none	STRG.13703.1,STRG.13703.4,blat.proc3829893.chain_2180,blat.proc3829893.chain_2182	4	STRG.13703.2	1
scaffold_18	starts_in_intron	2831979	2831979	+	asmbl_20447	none	Trinity_GG_11580_c2_g1_i1,blat.proc3829881.chain_1926	2	STRG.21133.1,STRG.21133.2,blat.proc3829881.chain_1915,blat.proc3829881.chain_1916,blat.proc3829881.chain_1923	5
scaffold_21	starts_in_intron	1656209	1656209	+	asmbl_28372	none	Trinity_GG_13211_c0_g1_i4,blat.proc3829883.chain_993	2	STRG.23807.1,Trinity_GG_13211_c0_g1_i2,Trinity_GG_13211_c0_g1_i3,Trinity_GG_13211_c0_g1_i6,Trinity_GG_13211_c0_g1_i7,blat.proc3829883.chain_988,blat.proc3829883.chain_989,blat.proc3829883.chain_990,blat.proc3829883.chain_992	9
scaffold_19	retained_intron	12574951	12575421	-	asmbl_21730	none	blat.proc3829897.chain_3224	1	STRG.22574.2,STRG.22574.3,blat.proc3829897.chain_3225	3
scaffold_14	alt_acceptor	1374592	1374593	-	asmbl_12855,asmbl_12857	none	STRG.16775.1,blat.proc3829895.chain_1488,blat.proc3829895.chain_1490	3	STRG.16775.2,blat.proc3829895.chain_1489	2
scaffold_12	spliced_intron	7113789	7113837	+	asmbl_8676	none	blat.proc3829877.chain_3210	1	STRG.14760.1,blat.proc3829877.chain_3208,blat.proc3829877.chain_3209	3
scaffold_7	alt_donor	712501	712502	-	asmbl_49505,asmbl_49508	none	STRG.8600.1,blat.proc3829891.chain_979,blat.proc3829891.chain_980	3	blat.proc3829891.chain_978	1
scaffold_26	alternate_exon	5862522	5862609	+	asmbl_35576	none	blat.proc3829885.chain_1300	1	STRG.28276.2	1
scaffold_1	alt_donor	11568031	11568032	-	asmbl_641,asmbl_644,asmbl_646	none	STRG.766.1,blat.proc3829887.chain_577,blat.proc3829887.chain_579,blat.proc3829887.chain_580	4	STRG.766.2,blat.proc3829887.chain_578,blat.proc3829887.chain_581	3
scaffold_27	alt_donor	1959004	1959005	+	asmbl_36011,asmbl_36017	none	STRG.28656.3,blat.proc3829885.chain_1692,blat.proc3829885.chain_1696	3	STRG.28656.1,STRG.28656.2,blat.proc3829885.chain_1693	3
scaffold_9	alternate_exon	2029701	2029761	-	asmbl_54827	none	STRG.10869.2	1	STRG.10869.1,blat.proc3829891.chain_3051	2
scaffold_26	ends_in_intron	9774294	9774294	+	asmbl_35782,asmbl_35783,asmbl_35784,asmbl_35785	none	blat.proc3829885.chain_1534	1	STRG.28501.1,STRG.28501.3,STRG.28501.5,STRG.28501.9,blat.proc3829885.chain_1535,blat.proc3829885.chain_1538	6
scaffold_18	retained_intron	824551	824807	+	asmbl_20351,asmbl_20353	none	STRG.20996.2,Trinity_GG_11513_c0_g1_i7,blat.proc3829881.chain_1778,blat.proc3829881.chain_1780	4	blat.proc3829881.chain_1782	1
scaffold_27	alternate_exon	5656640	5656700	+	asmbl_36308	none	STRG.28952.3,Trinity_GG_16010_c0_g1_i1,blat.proc3829885.chain_2033	3	STRG.28952.1,STRG.28952.2,blat.proc3829885.chain_2030,blat.proc3829885.chain_2031,blat.proc3829885.chain_2032	5
scaffold_22	skipped_exon	5981551	5983283	-	asmbl_30066,asmbl_30067	none	STRG.24932.1,STRG.24932.2,STRG.24932.3	3	STRG.24932.4	1
scaffold_4	alt_donor	13412094	13412095	-	asmbl_41740	none	STRG.4970.1,blat.proc3829889.chain_986	2	STRG.4970.2	1
scaffold_19	starts_in_intron	5604359	5604359	-	asmbl_21379	none	blat.proc3829897.chain_2873	1	STRG.22115.1,blat.proc3829897.chain_2872	2
scaffold_5	alt_donor	15044156	15044157	-	asmbl_46015	none	STRG.6692.5	1	STRG.6692.2,STRG.6692.7,STRG.6692.8,STRG.6692.9	4
scaffold_5	skipped_exon	9084795	9085017	+	asmbl_44271	none	blat.proc3829873.chain_2424	1	STRG.6237.1,STRG.6237.2,STRG.6237.3,STRG.6237.4,STRG.6237.5,blat.proc3829873.chain_2418,blat.proc3829873.chain_2419,blat.proc3829873.chain_2421,blat.proc3829873.chain_2422,blat.proc3829873.chain_2423,blat.proc3829873.chain_2426	11
scaffold_16	alt_acceptor	7369494	7369495	+	asmbl_17131,asmbl_17133	none	STRG.19387.1,STRG.19387.2,blat.proc3829881.chain_228,blat.proc3829881.chain_229,blat.proc3829881.chain_230	5	STRG.19387.3,blat.proc3829881.chain_227	2
scaffold_25	retained_intron	6253172	6253303	+	asmbl_33603,asmbl_33604	none	Trinity_GG_15150_c0_g1_i3,blat.proc3829885.chain_517,blat.proc3829885.chain_519	3	STRG.27492.1,blat.proc3829885.chain_518,blat.proc3829885.chain_520,blat.proc3829885.chain_521	4
scaffold_26	ends_in_intron	2820373	2820373	-	asmbl_34725	none	Trinity_GG_32673_c0_g2_i1,blat.proc3829901.chain_1198	2	STRG.27960.1,blat.proc3829901.chain_1197	2
scaffold_12	starts_in_intron	14171833	14171833	+	asmbl_9032	none	Trinity_GG_8405_c0_g1_i9,blat.proc3829877.chain_3705	2	STRG.15236.1,blat.proc3829877.chain_3704,blat.proc3829877.chain_3707,blat.proc3829877.chain_3708	4
scaffold_28	alt_donor	5014513	5014514	+	asmbl_38251	none	STRG.29628.3,Trinity_GG_16433_c0_g2_i4,blat.proc3829885.chain_2755	3	blat.proc3829885.chain_2754	1
scaffold_1	retained_intron	5750406	5750501	+	asmbl_1779	none	blat.proc3829871.chain_439	1	STRG.373.1,STRG.373.2,STRG.373.3,blat.proc3829871.chain_435,blat.proc3829871.chain_437,blat.proc3829871.chain_438	6
scaffold_7	alt_acceptor	8827377	8827378	-	asmbl_49850	none	STRG.9110.2	1	STRG.9110.1,blat.proc3829891.chain_1354	2
scaffold_7	spliced_intron	4391769	4391853	+	asmbl_50611,asmbl_50613	none	Trinity_GG_4787_c0_g1_i2,blat.proc3829875.chain_1130	2	Trinity_GG_4787_c0_g1_i1,blat.proc3829875.chain_1131	2
scaffold_11	skipped_exon	3767492	3770068	-	asmbl_6551,asmbl_6557	none	STRG.13488.1,STRG.13488.3,blat.proc3829893.chain_1962	3	STRG.13488.4	1
scaffold_18	retained_intron	7199463	7200059	+	asmbl_20749	none	STRG.21415.3,Trinity_GG_11823_c0_g1_i2,blat.proc3829881.chain_2374	3	STRG.21415.4	1
scaffold_6	skipped_exon	11482302	11482860	+	asmbl_47268,asmbl_47270	none	STRG.7936.3,blat.proc3829875.chain_301	2	STRG.7936.4	1
scaffold_4	spliced_intron	5215330	5215445	-	asmbl_41304	none	STRG.4413.1,blat.proc3829889.chain_516	2	STRG.4413.2,blat.proc3829889.chain_515	2
scaffold_12	spliced_intron	10187622	10187770	-	asmbl_7861	none	STRG.14979.6	1	STRG.14979.3,STRG.14979.4,blat.proc3829893.chain_3402	3
scaffold_11	spliced_intron	4639501	4639586	+	asmbl_5450,asmbl_5455	none	STRG.13534.1,blat.proc3829877.chain_2038,blat.proc3829877.chain_2039	3	Trinity_GG_7453_c0_g1_i3,blat.proc3829877.chain_2037	2
scaffold_28	spliced_intron	5014513	5014595	+	asmbl_38250,asmbl_38252,asmbl_38253,asmbl_38255,asmbl_38256	none	STRG.29628.1,STRG.29628.2,Trinity_GG_16433_c0_g1_i1,Trinity_GG_16433_c0_g2_i3,blat.proc3829885.chain_2751,blat.proc3829885.chain_2752,blat.proc3829885.chain_2753,blat.proc3829885.chain_2757	8	Trinity_GG_16433_c0_g2_i1,blat.proc3829885.chain_2754,blat.proc3829885.chain_2756	3
scaffold_11	spliced_intron	7049578	7049788	+	asmbl_5610,asmbl_5613	none	STRG.13722.1,Trinity_GG_7553_c0_g1_i7,blat.proc3829877.chain_2194	3	Trinity_GG_7553_c0_g1_i5,blat.proc3829877.chain_2195	2
scaffold_13	alt_donor	3733773	3733774	+	asmbl_10714	none	STRG.15686.1,blat.proc3829879.chain_394	2	STRG.15686.2,blat.proc3829879.chain_392	2
scaffold_6	retained_intron	11114758	11114940	-	asmbl_48675	none	STRG.7918.3,Trinity_GG_21518_c0_g1_i1,blat.proc3829891.chain_213	3	STRG.7918.1,STRG.7918.2,Trinity_GG_21518_c0_g1_i4,blat.proc3829891.chain_215	4
scaffold_2	alt_acceptor	13077503	13077504	-	asmbl_23504,asmbl_23506,asmbl_23507,asmbl_23508,asmbl_23509	none	STRG.2340.2,STRG.2340.3,blat.proc3829887.chain_2257,blat.proc3829887.chain_2258,blat.proc3829887.chain_2259,blat.proc3829887.chain_2260	6	STRG.2340.1,blat.proc3829887.chain_2255,blat.proc3829887.chain_2256,blat.proc3829887.chain_2262	4
scaffold_5	alternate_exon	3534424	3534765	-	asmbl_45303	none	STRG.5818.1,Trinity_GG_20293_c0_g1_i1,blat.proc3829889.chain_1908	3	STRG.5818.2	1
scaffold_1	alt_donor	18029643	18029644	-	asmbl_1074	none	STRG.1264.4	1	blat.proc3829871.chain_1253	1
scaffold_24	spliced_intron	3763914	3764002	-	asmbl_32837	none	STRG.26538.1,Trinity_GG_31847_c0_g1_i1,blat.proc3829899.chain_3597	3	Trinity_GG_31847_c0_g1_i2,blat.proc3829899.chain_3596	2
scaffold_4	spliced_intron	11986664	11986803	-	asmbl_41631	none	Trinity_GG_19725_c0_g1_i1,blat.proc3829889.chain_925	2	STRG.4852.1,Trinity_GG_19725_c0_g1_i2,blat.proc3829889.chain_924	3
scaffold_10	starts_in_intron	11581265	11581265	+	asmbl_4745	none	Trinity_GG_7053_c2_g1_i1,blat.proc3829877.chain_1359	2	blat.proc3829877.chain_1358	1
scaffold_22	alternate_exon	11475784	11476485	-	asmbl_30451	none	STRG.25475.3	1	STRG.25475.2	1
scaffold_21	alt_acceptor	2483173	2483174	-	asmbl_27492	none	STRG.23859.4	1	STRG.23859.1,STRG.23859.2,STRG.23859.3,Trinity_GG_30317_c0_g1_i2,blat.proc3829899.chain_950	5
scaffold_5	retained_intron	11644624	11644686	+	asmbl_44426	none	STRG.6416.2,blat.proc3829873.chain_2518	2	STRG.6416.1	1
scaffold_2	starts_in_intron	1402439	1402439	+	asmbl_24221	none	Trinity_GG_941_c0_g1_i2,blat.proc3829871.chain_1734	2	STRG.1617.1,STRG.1617.2,blat.proc3829871.chain_1733	3
scaffold_19	retained_intron	11483479	11483614	-	asmbl_21615,asmbl_21621	none	STRG.22477.1,blat.proc3829897.chain_3181,blat.proc3829897.chain_3193	3	blat.proc3829897.chain_3187,blat.proc3829897.chain_3192	2
scaffold_19	alt_acceptor	6239022	6239023	-	asmbl_21408	none	blat.proc3829897.chain_2828	1	STRG.22152.1	1
scaffold_4	starts_in_intron	14679675	14679675	-	asmbl_41825	none	blat.proc3829889.chain_1079	1	STRG.5103.1,STRG.5103.2,STRG.5103.3,blat.proc3829889.chain_1080	4
scaffold_19	spliced_intron	12972587	12973050	-	asmbl_21787,asmbl_21788,asmbl_21790,asmbl_21792	none	STRG.22606.1,STRG.22606.4,Trinity_GG_29578_c0_g1_i2,Trinity_GG_29578_c0_g1_i4,Trinity_GG_29578_c0_g1_i8,blat.proc3829897.chain_3320,blat.proc3829897.chain_3323,blat.proc3829897.chain_3324	8	STRG.22606.3,Trinity_GG_29578_c0_g1_i5,blat.proc3829897.chain_3321	3
scaffold_25	retained_intron	9043482	9043880	-	asmbl_34451,asmbl_34452	none	STRG.27702.2,Trinity_GG_32528_c0_g1_i7,blat.proc3829901.chain_983,blat.proc3829901.chain_984	4	STRG.27702.1,STRG.27702.3,blat.proc3829901.chain_982,blat.proc3829901.chain_985,blat.proc3829901.chain_986,blat.proc3829901.chain_988	6
scaffold_20	alternate_exon	11483460	11484147	+	asmbl_26208	none	STRG.23639.3,Trinity_GG_13053_c0_g1_i1,blat.proc3829883.chain_715	3	STRG.23639.1,STRG.23639.4,Trinity_GG_13053_c0_g1_i2,Trinity_GG_13053_c0_g1_i3,blat.proc3829883.chain_714,blat.proc3829883.chain_716	6
scaffold_25	ends_in_intron	5812680	5812680	-	asmbl_34262	none	Trinity_GG_32401_c1_g1_i1,blat.proc3829901.chain_775	2	STRG.27454.1,blat.proc3829901.chain_771,blat.proc3829901.chain_772,blat.proc3829901.chain_773	4
scaffold_149	retained_intron	113	1567	+	asmbl_13882	none	STRG.30166.1,Trinity_GG_16709_c0_g1_i1,Trinity_GG_16709_c1_g1_i1,Trinity_GG_16709_c2_g1_i1,Trinity_GG_16709_c3_g1_i1,blat.proc3829885.chain_3221,blat.proc3829885.chain_3222,blat.proc3829885.chain_3223,blat.proc3829885.chain_3224	9	STRG.30166.2	1
scaffold_11	alt_acceptor	2203649	2203650	-	asmbl_6462	none	STRG.13369.2	1	STRG.13369.1,STRG.13369.3,STRG.13369.4	3
scaffold_8	spliced_intron	12728267	12728451	-	asmbl_53226,asmbl_53228	none	STRG.10443.1,STRG.10443.2,blat.proc3829891.chain_2564	3	blat.proc3829891.chain_2565	1
scaffold_16	ends_in_intron	442038	442038	-	asmbl_16040	none	blat.proc3829897.chain_37	1	STRG.19039.1,STRG.19039.4,blat.proc3829897.chain_32	3
scaffold_28	retained_intron	295957	296054	+	asmbl_37965	none	blat.proc3829885.chain_2400	1	STRG.29243.1,STRG.29243.2,STRG.29243.3,blat.proc3829885.chain_2398,blat.proc3829885.chain_2399,blat.proc3829885.chain_2401	6
scaffold_3	starts_in_intron	12773764	12773764	+	asmbl_40368	none	STRG.3666.3,Trinity_GG_2047_c0_g1_i1,blat.proc3829873.chain_49	3	STRG.3666.1,STRG.3666.2,Trinity_GG_2047_c0_g1_i3,blat.proc3829873.chain_50	4
scaffold_10	alternate_exon	7670983	7671552	+	asmbl_4576	none	STRG.12547.1	1	STRG.12547.2	1
scaffold_18	alt_acceptor	7631535	7631536	-	asmbl_19994,asmbl_19995,asmbl_20003	none	STRG.21453.2,STRG.21453.3,blat.proc3829897.chain_2310,blat.proc3829897.chain_2312,blat.proc3829897.chain_2314	5	STRG.21453.4,Trinity_GG_29021_c0_g1_i10,Trinity_GG_29021_c0_g1_i8,blat.proc3829897.chain_2311,blat.proc3829897.chain_2313	5
scaffold_10	spliced_intron	11907708	11908477	+	asmbl_4776,asmbl_4778	none	STRG.12815.1,Trinity_GG_7071_c0_g1_i2,Trinity_GG_7071_c0_g1_i5,blat.proc3829877.chain_1403,blat.proc3829877.chain_1404	5	STRG.12815.2,Trinity_GG_7071_c0_g1_i3,blat.proc3829877.chain_1400,blat.proc3829877.chain_1402	4
scaffold_13	alternate_exon	7105938	7107882	+	asmbl_10997,asmbl_11000	none	STRG.15994.1,STRG.15994.2,Trinity_GG_8796_c0_g1_i12,blat.proc3829879.chain_723	4	STRG.15994.3,Trinity_GG_8796_c0_g1_i10,blat.proc3829879.chain_729	3
scaffold_19	spliced_intron	6213363	6213529	+	asmbl_22202,asmbl_22204	none	STRG.22141.2,STRG.22141.3,blat.proc3829881.chain_3088,blat.proc3829881.chain_3089	4	STRG.22141.4,Trinity_GG_12238_c0_g1_i3,blat.proc3829881.chain_3087	3
scaffold_13	spliced_intron	663297	663385	-	asmbl_9327,asmbl_9328,asmbl_9329,asmbl_9330	none	STRG.15439.1,STRG.15439.2,Trinity_GG_25669_c0_g1_i2,Trinity_GG_25669_c0_g1_i3,Trinity_GG_25669_c0_g1_i4,Trinity_GG_25669_c0_g1_i5,blat.proc3829895.chain_176,blat.proc3829895.chain_177,blat.proc3829895.chain_178,blat.proc3829895.chain_179	10	Trinity_GG_25669_c0_g1_i6,blat.proc3829895.chain_180	2
scaffold_25	alt_acceptor	3627660	3627661	+	asmbl_33431,asmbl_33433	none	STRG.27294.1,blat.proc3829885.chain_341,blat.proc3829885.chain_342	3	STRG.27294.2,STRG.27294.3	2
scaffold_20	ends_in_intron	12075689	12075689	-	asmbl_27141	none	Trinity_GG_30196_c0_g1_i7,blat.proc3829899.chain_689	2	STRG.23691.1,blat.proc3829899.chain_688,blat.proc3829899.chain_690,blat.proc3829899.chain_691,blat.proc3829899.chain_692	5
scaffold_7	ends_in_intron	13211252	13211252	+	asmbl_51206	none	blat.proc3829875.chain_1881	1	STRG.9420.1,STRG.9420.2,STRG.9420.3,STRG.9420.4,blat.proc3829875.chain_1880,blat.proc3829875.chain_1882,blat.proc3829875.chain_1883,blat.proc3829875.chain_1884	8
scaffold_8	alt_acceptor	14147816	14147817	-	asmbl_53303	none	STRG.10514.2,blat.proc3829891.chain_2650	2	STRG.10514.1,STRG.10514.3,blat.proc3829891.chain_2651	3
scaffold_20	ends_in_intron	9621044	9621044	-	asmbl_26974	none	blat.proc3829899.chain_453	1	STRG.23487.1,blat.proc3829899.chain_455	2
scaffold_26	alternate_exon	4572836	4585123	-	asmbl_34840	none	STRG.28157.1,blat.proc3829901.chain_1342	2	STRG.28157.2,blat.proc3829901.chain_1343	2
scaffold_1	alternate_exon	12338334	12339195	-	asmbl_714,asmbl_721	none	blat.proc3829887.chain_738,blat.proc3829887.chain_746	2	blat.proc3829887.chain_740,blat.proc3829887.chain_744	2
scaffold_25	alt_donor	337680	337681	+	asmbl_33317	none	STRG.27057.2	1	STRG.27057.1	1
scaffold_6	retained_intron	8579544	8579666	+	asmbl_47089	none	blat.proc3829875.chain_111	1	STRG.7732.1,STRG.7732.2,STRG.7732.3,blat.proc3829875.chain_112	4
scaffold_24	spliced_intron	6307469	6307627	+	asmbl_32311	none	STRG.26676.4	1	STRG.26676.1,STRG.26676.2,blat.proc3829883.chain_3586,blat.proc3829883.chain_3587	4
scaffold_4	starts_in_intron	18525415	18525415	-	asmbl_42128	none	blat.proc3829889.chain_1548	1	STRG.5454.1,blat.proc3829889.chain_1547	2
scaffold_11	alt_donor	6574182	6574183	-	asmbl_6697	none	STRG.13689.1,blat.proc3829893.chain_2134	2	STRG.13689.2	1
scaffold_23	alternate_exon	7915793	7916159	-	asmbl_31776	none	STRG.26078.1,blat.proc3829899.chain_3207	2	STRG.26078.4,blat.proc3829899.chain_3208	2
scaffold_15	retained_intron	12008633	12009314	-	asmbl_15571,asmbl_15572	none	STRG.18635.3,blat.proc3829895.chain_3342	2	STRG.18635.1,blat.proc3829895.chain_3343	2
scaffold_16	alternate_exon	6118560	6118617	+	asmbl_17061	none	STRG.19331.2	1	STRG.19331.1,blat.proc3829881.chain_187,blat.proc3829881.chain_188,blat.proc3829881.chain_189	4
scaffold_15	alt_donor	15130184	15130185	-	asmbl_15774	none	STRG.18892.1,Trinity_GG_27624_c0_g1_i1,blat.proc3829895.chain_3668	3	Trinity_GG_27624_c0_g1_i2,blat.proc3829895.chain_3669	2
scaffold_15	spliced_intron	389347	389455	+	asmbl_13909,asmbl_13911,asmbl_13913	none	STRG.17879.1,STRG.17879.2,blat.proc3829879.chain_2569,blat.proc3829879.chain_2571,blat.proc3829879.chain_2574,blat.proc3829879.chain_2575	6	STRG.17879.3,Trinity_GG_9836_c0_g1_i2,blat.proc3829879.chain_2572,blat.proc3829879.chain_2573	4
scaffold_2	starts_in_intron	10880091	10880091	+	asmbl_24772,asmbl_24773	none	Trinity_GG_1275_c0_g1_i1,Trinity_GG_1275_c0_g1_i3,blat.proc3829871.chain_2374,blat.proc3829871.chain_2378	4	STRG.2242.1,STRG.2242.2,Trinity_GG_1275_c0_g1_i6,blat.proc3829871.chain_2373,blat.proc3829871.chain_2376,blat.proc3829871.chain_2377	6
scaffold_2	alternate_exon	16357487	16357813	+	asmbl_25152	none	STRG.2573.4,blat.proc3829871.chain_2759	2	STRG.2573.2,STRG.2573.3,blat.proc3829871.chain_2760	3
scaffold_566	alt_acceptor	4023	4024	+	asmbl_46538	none	blat.proc3829879.chain_709	1	STRG.30371.1	1
scaffold_4	starts_in_intron	7038582	7038582	+	asmbl_42780	none	STRG.4538.3,Trinity_GG_2522_c2_g1_i1,blat.proc3829873.chain_922	3	STRG.4538.1,STRG.4538.2,blat.proc3829873.chain_918,blat.proc3829873.chain_920	4
scaffold_1	alternate_exon	22371837	22372307	+	asmbl_2681	none	STRG.1490.6	1	STRG.1490.2,STRG.1490.4	2
scaffold_19	alternate_exon	5637598	5637649	-	asmbl_21391	none	blat.proc3829897.chain_2914	1	blat.proc3829897.chain_2910,blat.proc3829897.chain_2911,blat.proc3829897.chain_2913	3
scaffold_23	ends_in_intron	6621852	6621852	+	asmbl_30927	none	blat.proc3829883.chain_2871	1	STRG.25983.1,STRG.25983.2,blat.proc3829883.chain_2870,blat.proc3829883.chain_2874	4
scaffold_18	retained_intron	839307	839434	-	asmbl_19637	none	blat.proc3829897.chain_1926	1	blat.proc3829897.chain_1924,blat.proc3829897.chain_1925	2
scaffold_4	retained_intron	9998114	9998655	+	asmbl_42972,asmbl_42974	none	STRG.4763.2,STRG.4763.4,Trinity_GG_2650_c0_g1_i1,blat.proc3829873.chain_1112,blat.proc3829873.chain_1116	5	STRG.4763.1,blat.proc3829873.chain_1113,blat.proc3829873.chain_1114,blat.proc3829873.chain_1115	4
scaffold_11	retained_exon	9123255	9123278	+	asmbl_5830,asmbl_5831	none	STRG.13941.1,blat.proc3829877.chain_2417,blat.proc3829877.chain_2419	3	STRG.13941.2,blat.proc3829877.chain_2418	2
scaffold_8	alt_acceptor	9922006	9922007	-	asmbl_53068,asmbl_53070	none	STRG.10236.1,blat.proc3829891.chain_2428	2	STRG.10236.2	1
scaffold_27	spliced_intron	2816855	2816968	+	asmbl_36074,asmbl_36075,asmbl_36079,asmbl_36080,asmbl_36081,asmbl_36082	none	STRG.28742.1,STRG.28742.2,STRG.28742.3,STRG.28742.4,blat.proc3829885.chain_1799,blat.proc3829885.chain_1801,blat.proc3829885.chain_1802,blat.proc3829885.chain_1803	8	Trinity_GG_15908_c0_g1_i1,blat.proc3829885.chain_1800	2
scaffold_28	alt_acceptor	2119822	2119823	+	asmbl_38021	none	STRG.29350.1,blat.proc3829885.chain_2477	2	STRG.29350.2,blat.proc3829885.chain_2476	2
scaffold_20	alt_acceptor	11613371	11613372	-	asmbl_27094,asmbl_27095	none	STRG.23657.1,blat.proc3829899.chain_696	2	blat.proc3829899.chain_703	1
scaffold_16	spliced_intron	10441689	10441843	+	asmbl_17331	none	STRG.19601.1,Trinity_GG_10746_c0_g1_i1,Trinity_GG_10746_c0_g1_i3,blat.proc3829881.chain_486	4	Trinity_GG_10746_c0_g1_i2,blat.proc3829881.chain_487	2
scaffold_20	retained_intron	10660786	10661477	+	asmbl_26130	none	STRG.23585.1,Trinity_GG_12978_c0_g1_i3,blat.proc3829883.chain_587	3	STRG.23585.2,Trinity_GG_12978_c0_g1_i1,blat.proc3829883.chain_588	3
scaffold_18	alternate_exon	1602097	1602169	+	asmbl_20391	none	STRG.21031.1,blat.proc3829881.chain_1913	2	STRG.21031.2,blat.proc3829881.chain_1910,blat.proc3829881.chain_1912	3
scaffold_28	alt_acceptor	3069081	3069082	+	asmbl_38127	none	STRG.29493.1,blat.proc3829885.chain_2597	2	blat.proc3829885.chain_2598	1
scaffold_8	retained_intron	12625677	12626425	-	asmbl_53215,asmbl_53216	none	blat.proc3829891.chain_2559,blat.proc3829891.chain_2560	2	STRG.10429.2	1
scaffold_17	alt_acceptor	13196847	13196848	-	asmbl_19406	none	STRG.20803.2,blat.proc3829897.chain_1732	2	STRG.20803.1,STRG.20803.3,STRG.20803.4,blat.proc3829897.chain_1733,blat.proc3829897.chain_1734,blat.proc3829897.chain_1737	6
scaffold_5	ends_in_intron	15797222	15797222	-	asmbl_46107	none	Trinity_GG_20813_c0_g1_i2,blat.proc3829889.chain_2836	2	STRG.6761.1	1
scaffold_2208	retained_intron	1132	1315	-	asmbl_30559	none	STRG.30700.1,Trinity_GG_16772_c0_g1_i1,Trinity_GG_33865_c0_g1_i1,Trinity_GG_34223_c0_g1_i1,blat.proc3829901.chain_3651	5	blat.proc3829901.chain_3157	1
scaffold_11	spliced_intron	8716691	8716938	-	asmbl_6853,asmbl_6858	none	STRG.13887.1,blat.proc3829893.chain_2332,blat.proc3829893.chain_2333	3	Trinity_GG_24779_c0_g1_i1,blat.proc3829893.chain_2330	2
scaffold_26	starts_in_intron	6663024	6663024	+	asmbl_35628	none	STRG.28362.3	1	STRG.28362.1,STRG.28362.2,blat.proc3829885.chain_1352,blat.proc3829885.chain_1353,blat.proc3829885.chain_1354	5
scaffold_322	alt_donor	6736	6737	-	asmbl_40914,asmbl_40915,asmbl_40917	none	STRG.30256.1,STRG.30256.2,STRG.30256.4	3	STRG.30256.3	1
scaffold_17	alt_acceptor	5137391	5137392	-	asmbl_18962	none	STRG.20232.3,blat.proc3829897.chain_1209	2	STRG.20232.1,STRG.20232.2,blat.proc3829897.chain_1206,blat.proc3829897.chain_1207	4
scaffold_21	alt_donor	7816522	7816523	-	asmbl_27878	none	STRG.24303.2	1	STRG.24303.1,blat.proc3829899.chain_1359	2
scaffold_28	alt_acceptor	4205203	4205204	+	asmbl_38215	none	STRG.29593.1	1	STRG.29593.4,STRG.29593.5,blat.proc3829885.chain_2724	3
scaffold_10	alt_acceptor	5677640	5677641	-	asmbl_3293	none	STRG.12380.1,blat.proc3829893.chain_828	2	STRG.12380.2	1
scaffold_26	ends_in_intron	1890499	1890499	-	asmbl_34697	none	blat.proc3829901.chain_1161	1	STRG.27919.1,blat.proc3829901.chain_1160	2
scaffold_1	starts_in_intron	11745316	11745316	+	asmbl_2125,asmbl_2126	none	Trinity_GG_493_c0_g1_i2,Trinity_GG_493_c0_g1_i4,blat.proc3829871.chain_877,blat.proc3829871.chain_879	4	STRG.787.1,blat.proc3829871.chain_878	2
scaffold_25	retained_intron	548373	548401	+	asmbl_33331	none	STRG.27085.1	1	STRG.27085.2	1
scaffold_8	alt_donor	5966226	5966227	+	asmbl_51905	none	STRG.9998.2	1	STRG.9998.1,blat.proc3829875.chain_2511,blat.proc3829875.chain_2512	3
scaffold_5	retained_intron	7320374	7320425	+	asmbl_44152,asmbl_44154	none	STRG.6121.1,blat.proc3829873.chain_2277	2	Trinity_GG_3345_c0_g2_i1	1
scaffold_18	retained_intron	9787711	9788236	-	asmbl_20116	none	Trinity_GG_29074_c0_g1_i2,blat.proc3829897.chain_2420	2	STRG.21574.2	1
scaffold_11	alternate_exon	12410298	12410342	-	asmbl_7069	none	STRG.14149.2	1	STRG.14149.1	1
scaffold_14	starts_in_intron	5451939	5451939	+	asmbl_11994	none	blat.proc3829879.chain_1724	1	STRG.17005.1,Trinity_GG_9352_c0_g1_i3,Trinity_GG_9352_c0_g1_i6,blat.proc3829879.chain_1723,blat.proc3829879.chain_1727	5
scaffold_27	alt_donor	1095311	1095312	+	asmbl_35951	none	STRG.28590.1,blat.proc3829885.chain_1641	2	blat.proc3829885.chain_1640	1
scaffold_13	alt_acceptor	2357503	2357504	+	asmbl_10575,asmbl_10576,asmbl_10579,asmbl_10580,asmbl_10581,asmbl_10582,asmbl_10583,asmbl_10584,asmbl_10585,asmbl_10588,asmbl_10590	none	STRG.15543.3,STRG.15543.6,STRG.15543.7,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161,blat.proc3829879.chain_162	11	STRG.15543.9	1
scaffold_26	starts_in_intron	3668378	3668378	+	asmbl_35342,asmbl_35343,asmbl_35345	none	blat.proc3829885.chain_1028,blat.proc3829885.chain_1029,blat.proc3829885.chain_1032	3	STRG.28032.1,blat.proc3829885.chain_1030	2
scaffold_20	retained_intron	1080419	1081286	-	asmbl_26461	none	STRG.22801.2,Trinity_GG_29737_c0_g1_i2,Trinity_GG_29737_c1_g1_i1,blat.proc3829897.chain_3589,blat.proc3829897.chain_3590	5	STRG.22801.1,blat.proc3829897.chain_3588	2
scaffold_27	alt_donor	975045	975046	+	asmbl_35932	none	STRG.28576.2	1	STRG.28576.1,Trinity_GG_15816_c0_g1_i1,Trinity_GG_15816_c0_g1_i5,Trinity_GG_15816_c0_g1_i6,blat.proc3829885.chain_1616,blat.proc3829885.chain_1617,blat.proc3829885.chain_1621	7
scaffold_18	alt_donor	347731	347732	+	asmbl_20320	none	blat.proc3829881.chain_1826	1	STRG.20974.1,STRG.20974.2,blat.proc3829881.chain_1825,blat.proc3829881.chain_1827	4
scaffold_14	alt_donor	7446970	7446971	+	asmbl_12143	none	STRG.17170.1,blat.proc3829879.chain_1840	2	STRG.17170.2,blat.proc3829879.chain_1841	2
scaffold_23	alt_acceptor	8204480	8204481	+	asmbl_31060,asmbl_31063,asmbl_31064	none	STRG.26112.1,blat.proc3829883.chain_2936,blat.proc3829883.chain_2937,blat.proc3829883.chain_2938	4	STRG.26112.2	1
scaffold_5	alt_acceptor	9085032	9085033	+	asmbl_44262	none	blat.proc3829873.chain_2418	1	blat.proc3829873.chain_2424	1
scaffold_27	alt_donor	9156346	9156347	+	asmbl_36471	none	STRG.29146.2	1	STRG.29146.1	1
scaffold_8	ends_in_intron	11780895	11780895	-	asmbl_53167	none	blat.proc3829891.chain_2496	1	STRG.10373.1,STRG.10373.2,blat.proc3829891.chain_2497	3
scaffold_17	spliced_intron	8316944	8317189	+	asmbl_18093,asmbl_18094,asmbl_18098,asmbl_18099,asmbl_18100	none	STRG.20443.1,STRG.20443.2,blat.proc3829881.chain_1250,blat.proc3829881.chain_1251,blat.proc3829881.chain_1253	5	STRG.20443.3	1
scaffold_4	retained_intron	19141911	19141983	+	asmbl_43471	none	blat.proc3829873.chain_1730	1	STRG.5501.1,blat.proc3829873.chain_1729	2
scaffold_10	retained_intron	6070501	6070618	-	asmbl_3344	none	blat.proc3829893.chain_918	1	STRG.12437.1,STRG.12437.2,STRG.12437.3,blat.proc3829893.chain_920,blat.proc3829893.chain_922,blat.proc3829893.chain_923,blat.proc3829893.chain_924	7
scaffold_16	spliced_intron	744159	744656	-	asmbl_16069,asmbl_16072	none	STRG.19044.2,blat.proc3829897.chain_11	2	blat.proc3829897.chain_14,blat.proc3829897.chain_9	2
scaffold_8	spliced_intron	9465823	9465961	-	asmbl_53030,asmbl_53033,asmbl_53034,asmbl_53035	none	STRG.10197.1,blat.proc3829891.chain_2403,blat.proc3829891.chain_2405,blat.proc3829891.chain_2406,blat.proc3829891.chain_2407	5	blat.proc3829891.chain_2400,blat.proc3829891.chain_2408	2
scaffold_12	spliced_intron	11315720	11315814	-	asmbl_7925	none	STRG.15052.1,blat.proc3829893.chain_3463	2	Trinity_GG_25421_c0_g1_i2,blat.proc3829893.chain_3464	2
scaffold_7	spliced_intron	4884544	4884813	+	asmbl_50635,asmbl_50638	none	STRG.8824.2,blat.proc3829875.chain_1237,blat.proc3829875.chain_1239	3	STRG.8824.1,blat.proc3829875.chain_1240	2
scaffold_6	alternate_exon	5266625	5268470	+	asmbl_46877	none	STRG.7492.1,Trinity_GG_4102_c0_g1_i4,blat.proc3829873.chain_3610	3	STRG.7492.2,blat.proc3829873.chain_3608	2
scaffold_4	starts_in_intron	16659266	16659266	+	asmbl_43331	none	blat.proc3829873.chain_1483	1	STRG.5252.2,blat.proc3829873.chain_1485	2
scaffold_11	alt_acceptor	6997535	6997536	-	asmbl_6728	none	STRG.13708.1	1	STRG.13708.2	1
scaffold_19	alt_acceptor	8805840	8805841	+	asmbl_22358	none	STRG.22319.1,blat.proc3829881.chain_3246	2	STRG.22319.2,STRG.22319.4	2
scaffold_6	alt_acceptor	9366754	9366755	-	asmbl_48553	none	STRG.7798.1,blat.proc3829891.chain_54	2	STRG.7798.2	1
scaffold_2131	starts_in_intron	1046	1046	+	asmbl_29058	none	Trinity_GG_16947_c0_g1_i2,blat.proc3829885.chain_3578	2	STRG.30687.1,blat.proc3829885.chain_3579	2
scaffold_2	retained_intron	14560511	14560687	+	asmbl_24981	none	Trinity_GG_1360_c0_g2_i1,blat.proc3829871.chain_2571	2	STRG.2454.1,STRG.2454.2,STRG.2454.3,STRG.2454.4,blat.proc3829871.chain_2565,blat.proc3829871.chain_2570	6
scaffold_19	ends_in_intron	7581922	7581922	+	asmbl_22281	none	Trinity_GG_12292_c0_g1_i1,blat.proc3829881.chain_3170	2	STRG.22230.1,STRG.22230.2,STRG.22230.3,Trinity_GG_12292_c0_g1_i5,blat.proc3829881.chain_3168,blat.proc3829881.chain_3171,blat.proc3829881.chain_3172	7
scaffold_5	alternate_exon	13789159	13789591	-	asmbl_45937	none	STRG.6581.1	1	STRG.6581.2,blat.proc3829889.chain_2564	2
scaffold_15	retained_intron	15857347	15857505	+	asmbl_14778,asmbl_14779	none	Trinity_GG_10383_c0_g1_i2,blat.proc3829879.chain_3541,blat.proc3829879.chain_3545	3	STRG.18964.1,STRG.18964.4	2
scaffold_9	alt_acceptor	16282359	16282360	-	asmbl_55530	none	STRG.11770.3	1	STRG.11770.1,blat.proc3829893.chain_149	2
scaffold_6	retained_intron	14175055	14175078	-	asmbl_48925,asmbl_48926,asmbl_48927,asmbl_48928	none	STRG.8173.1,blat.proc3829891.chain_508,blat.proc3829891.chain_509,blat.proc3829891.chain_510,blat.proc3829891.chain_511	5	STRG.8173.2	1
scaffold_19	skipped_exon	5626384	5626719	+	asmbl_22188	none	STRG.22116.4	1	STRG.22116.1,blat.proc3829881.chain_3077	2
scaffold_4	alt_acceptor	5474405	5474406	+	asmbl_42682	none	STRG.4439.1,blat.proc3829873.chain_803	2	STRG.4439.2	1
scaffold_17	alt_acceptor	14633404	14633405	+	asmbl_18534,asmbl_18535	none	STRG.20934.1,STRG.20934.3	2	blat.proc3829881.chain_1774	1
scaffold_23	retained_intron	362282	362408	-	asmbl_31310,asmbl_31311,asmbl_31313,asmbl_31314,asmbl_31317	none	STRG.25543.1,STRG.25543.4,STRG.25543.5,Trinity_GG_31299_c0_g1_i4,blat.proc3829899.chain_2650,blat.proc3829899.chain_2654,blat.proc3829899.chain_2655	7	blat.proc3829899.chain_2649	1
scaffold_17	spliced_intron	793926	794149	+	asmbl_17704,asmbl_17705	none	STRG.19917.1,STRG.19917.2	2	Trinity_GG_10882_c0_g1_i2,blat.proc3829881.chain_712	2
scaffold_1	starts_in_intron	7793494	7793494	+	asmbl_1915	none	STRG.536.2,blat.proc3829871.chain_597	2	STRG.536.1,blat.proc3829871.chain_596,blat.proc3829871.chain_598	3
scaffold_5	retained_exon	4683536	4683961	-	asmbl_45373,asmbl_45379,asmbl_45381,asmbl_45382	none	blat.proc3829889.chain_2027,blat.proc3829889.chain_2028,blat.proc3829889.chain_2032,blat.proc3829889.chain_2033	4	STRG.5919.1,STRG.5919.4,blat.proc3829889.chain_2029,blat.proc3829889.chain_2030,blat.proc3829889.chain_2035	5
scaffold_14	ends_in_intron	2919062	2919062	-	asmbl_12972	none	blat.proc3829895.chain_1605	1	STRG.16879.1,blat.proc3829895.chain_1604	2
scaffold_21	alt_acceptor	3824343	3824344	-	asmbl_27575,asmbl_27576	none	STRG.23959.2,STRG.23959.4,blat.proc3829899.chain_1041,blat.proc3829899.chain_1045	4	STRG.23959.1,blat.proc3829899.chain_1042,blat.proc3829899.chain_1043	3
scaffold_5	alt_donor	4696384	4696385	+	asmbl_43950	none	STRG.5917.3	1	STRG.5917.2,STRG.5917.4,blat.proc3829873.chain_2093,blat.proc3829873.chain_2094	4
scaffold_20	retained_intron	10384363	10384667	+	asmbl_26112	none	blat.proc3829883.chain_590	1	STRG.23569.1,STRG.23569.2,Trinity_GG_12979_c0_g1_i2,Trinity_GG_12979_c0_g1_i6,blat.proc3829883.chain_591,blat.proc3829883.chain_594	6
scaffold_6	alt_donor	12697745	12697746	-	asmbl_48779	none	STRG.8021.1,Trinity_GG_21571_c0_g1_i1,blat.proc3829891.chain_314	3	STRG.8021.2,Trinity_GG_21571_c0_g1_i3,blat.proc3829891.chain_315	3
scaffold_16	retained_intron	7540673	7540805	-	asmbl_16362	none	blat.proc3829897.chain_435	1	STRG.19400.1,blat.proc3829897.chain_434	2
scaffold_21	alternate_exon	3732173	3732250	-	asmbl_27555	none	STRG.23948.2,blat.proc3829899.chain_1022	2	STRG.23948.1,blat.proc3829899.chain_1021	2
scaffold_22	spliced_intron	594271	594371	+	asmbl_29162,asmbl_29164	none	STRG.24695.1,Trinity_GG_13614_c0_g1_i1,Trinity_GG_13614_c0_g1_i4,blat.proc3829883.chain_1676,blat.proc3829883.chain_1678	5	Trinity_GG_13614_c0_g1_i3,blat.proc3829883.chain_1677	2
scaffold_15	retained_intron	12525670	12525837	+	asmbl_14521	none	Trinity_GG_10203_c0_g1_i1,blat.proc3829879.chain_3196	2	STRG.18695.1,blat.proc3829879.chain_3194	2
scaffold_12	spliced_intron	12836971	12837042	-	asmbl_8025	none	STRG.15163.2	1	STRG.15163.1	1
scaffold_1	retained_intron	15303957	15304040	+	asmbl_2420,asmbl_2421	none	Trinity_GG_640_c0_g1_i2,Trinity_GG_640_c0_g1_i3,blat.proc3829871.chain_1163,blat.proc3829871.chain_1164	4	STRG.1093.1,Trinity_GG_640_c0_g1_i1,blat.proc3829871.chain_1165	3
scaffold_14	spliced_intron	11573664	11574063	-	asmbl_13487	none	STRG.17490.4	1	STRG.17490.2,Trinity_GG_26806_c0_g1_i8	2
scaffold_27	retained_intron	2998993	2999967	+	asmbl_36114,asmbl_36120	none	blat.proc3829885.chain_1844,blat.proc3829885.chain_1848	2	STRG.28767.1,STRG.28767.2,STRG.28767.3,STRG.28767.4,STRG.28767.5,blat.proc3829885.chain_1839,blat.proc3829885.chain_1841,blat.proc3829885.chain_1842,blat.proc3829885.chain_1843,blat.proc3829885.chain_1847,blat.proc3829885.chain_1849	11
scaffold_2	alt_donor	20130136	20130137	-	asmbl_23900	none	STRG.2841.1,blat.proc3829887.chain_2671	2	STRG.2841.2	1
scaffold_13	spliced_intron	14174306	14174488	+	asmbl_11414	none	STRG.16449.1,Trinity_GG_9054_c0_g1_i3,blat.proc3829879.chain_1195	3	Trinity_GG_9054_c0_g1_i7,blat.proc3829879.chain_1192	2
scaffold_11	skipped_exon	8397912	8399332	+	asmbl_5728	none	STRG.13845.1,blat.proc3829877.chain_2345	2	blat.proc3829877.chain_2344	1
scaffold_13	ends_in_intron	5705943	5705943	-	asmbl_9676	none	blat.proc3829895.chain_599	1	STRG.15859.1,STRG.15859.2,Trinity_GG_25916_c0_g1_i9,blat.proc3829895.chain_594,blat.proc3829895.chain_597,blat.proc3829895.chain_598	6
scaffold_18	starts_in_intron	814841	814841	+	asmbl_20347	none	blat.proc3829881.chain_1869	1	STRG.20995.1,blat.proc3829881.chain_1868	2
scaffold_9	retained_intron	5283686	5284698	+	asmbl_54006,asmbl_54007	none	STRG.11103.1,STRG.11103.2,blat.proc3829875.chain_3571,blat.proc3829875.chain_3573,blat.proc3829875.chain_3574,blat.proc3829875.chain_3576	6	STRG.11103.3,blat.proc3829875.chain_3572	2
scaffold_16	starts_in_intron	5495673	5495673	-	asmbl_16286	none	Trinity_GG_27821_c0_g1_i1,blat.proc3829897.chain_275	2	STRG.19292.1,Trinity_GG_27821_c0_g1_i2,blat.proc3829897.chain_274	3
scaffold_4	ends_in_intron	14966220	14966220	+	asmbl_43245,asmbl_43247	none	STRG.5106.2,blat.proc3829873.chain_1444,blat.proc3829873.chain_1446	3	STRG.5106.1,Trinity_GG_2864_c0_g1_i1,blat.proc3829873.chain_1442,blat.proc3829873.chain_1443,blat.proc3829873.chain_1445	5
scaffold_2	retained_intron	14190516	14191409	-	asmbl_23579,asmbl_23580,asmbl_23586	none	STRG.2417.1,Trinity_GG_18310_c0_g1_i1,blat.proc3829887.chain_2211,blat.proc3829887.chain_2212	4	STRG.2417.2,blat.proc3829887.chain_2207,blat.proc3829887.chain_2208,blat.proc3829887.chain_2209,blat.proc3829887.chain_2210	5
scaffold_17	spliced_intron	5137391	5138143	-	asmbl_18962	none	STRG.20232.3,blat.proc3829897.chain_1209	2	STRG.20232.4,blat.proc3829897.chain_1208	2
scaffold_7	skipped_exon	12369012	12370152	+	asmbl_51126	none	STRG.9325.1,blat.proc3829875.chain_1799	2	blat.proc3829875.chain_1800	1
scaffold_17	alt_acceptor	8808712	8808713	-	asmbl_19164	none	STRG.20479.2,blat.proc3829897.chain_1443	2	STRG.20479.1,blat.proc3829897.chain_1441	2
scaffold_1	ends_in_intron	3680318	3680318	+	asmbl_1625	none	blat.proc3829871.chain_294	1	STRG.237.1,blat.proc3829871.chain_293	2
scaffold_23	alternate_exon	6331560	6332566	+	asmbl_30910	none	blat.proc3829883.chain_2839	1	STRG.25966.3,blat.proc3829883.chain_2837	2
scaffold_2	alt_acceptor	4788490	4788491	+	asmbl_24404	none	STRG.1897.1,blat.proc3829871.chain_1854	2	STRG.1897.3,STRG.1897.5,blat.proc3829871.chain_1851,blat.proc3829871.chain_1853	4
scaffold_8	alt_acceptor	16499327	16499328	-	asmbl_53406,asmbl_53411,asmbl_53414,asmbl_53424	none	STRG.10621.2,Trinity_GG_22960_c0_g1_i19,Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i27,blat.proc3829891.chain_2855,blat.proc3829891.chain_2863,blat.proc3829891.chain_2869,blat.proc3829891.chain_2872	8	STRG.10621.1,STRG.10621.5,Trinity_GG_22960_c0_g1_i18,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2857,blat.proc3829891.chain_2864,blat.proc3829891.chain_2868,blat.proc3829891.chain_2870	9
scaffold_2	retained_intron	10635940	10636060	-	asmbl_23444	none	blat.proc3829887.chain_2058	1	STRG.2225.1,STRG.2225.2,blat.proc3829887.chain_2055,blat.proc3829887.chain_2056,blat.proc3829887.chain_2057	5
scaffold_3	alternate_exon	17114327	17116855	+	asmbl_40604	none	STRG.3957.7,Trinity_GG_2203_c0_g1_i10,Trinity_GG_2203_c2_g1_i1,Trinity_GG_2203_c3_g1_i1,Trinity_GG_2203_c4_g1_i1,Trinity_GG_2203_c5_g1_i1,blat.proc3829873.chain_322,blat.proc3829873.chain_325,blat.proc3829873.chain_326,blat.proc3829873.chain_327	10	blat.proc3829873.chain_318	1
scaffold_26	retained_exon	9843315	9843402	+	asmbl_35801,asmbl_35806,asmbl_35807,asmbl_35810,asmbl_35812,asmbl_35814	none	STRG.28526.5,blat.proc3829885.chain_1556,blat.proc3829885.chain_1558,blat.proc3829885.chain_1561,blat.proc3829885.chain_1562,blat.proc3829885.chain_1564,blat.proc3829885.chain_1567	7	STRG.28526.2,blat.proc3829885.chain_1563,blat.proc3829885.chain_1565	3
scaffold_3	spliced_intron	19885239	19885401	-	asmbl_39615,asmbl_39616	none	STRG.4100.1,Trinity_GG_19264_c1_g1_i1,Trinity_GG_19264_c1_g1_i7,blat.proc3829889.chain_140,blat.proc3829889.chain_141	5	Trinity_GG_19264_c1_g1_i6,blat.proc3829889.chain_139,blat.proc3829889.chain_144	3
scaffold_6	retained_exon	3041413	3041909	-	asmbl_48166	none	STRG.7302.2,blat.proc3829889.chain_3318	2	STRG.7302.1,blat.proc3829889.chain_3319	2
scaffold_22	alternate_exon	5935841	5936700	+	asmbl_29367	none	STRG.24924.3	1	STRG.24924.2	1
scaffold_6	retained_intron	5753701	5753903	+	asmbl_46915,asmbl_46918	none	STRG.7525.1,Trinity_GG_4120_c0_g1_i1,blat.proc3829873.chain_3645,blat.proc3829873.chain_3646	4	STRG.7525.2,blat.proc3829873.chain_3644,blat.proc3829873.chain_3647	3
scaffold_7	starts_in_intron	818690	818690	+	asmbl_50446	none	Trinity_GG_4707_c0_g1_i1,blat.proc3829875.chain_975	2	STRG.8613.1,blat.proc3829875.chain_972,blat.proc3829875.chain_974	3
scaffold_11	retained_intron	1983670	1983757	-	asmbl_6439	none	blat.proc3829893.chain_1816	1	STRG.13349.2,blat.proc3829893.chain_1815	2
scaffold_14	alt_acceptor	6277225	6277226	-	asmbl_13095,asmbl_13097	none	STRG.17065.2,STRG.17065.4,blat.proc3829895.chain_1817	3	STRG.17065.1,STRG.17065.3,blat.proc3829895.chain_1814,blat.proc3829895.chain_1815,blat.proc3829895.chain_1816	5
scaffold_15	starts_in_intron	11053303	11053303	-	asmbl_15492	none	blat.proc3829895.chain_3246	1	STRG.18571.1,blat.proc3829895.chain_3245	2
scaffold_5	starts_in_intron	997120	997120	+	asmbl_43774	none	Trinity_GG_3046_c0_g1_i1,blat.proc3829873.chain_1761	2	STRG.5643.1	1
scaffold_6	ends_in_intron	18086157	18086157	+	asmbl_47757	none	blat.proc3829875.chain_879	1	STRG.8493.2,blat.proc3829875.chain_883	2
scaffold_23	skipped_exon	5764489	5766611	-	asmbl_31662	none	STRG.25927.2,Trinity_GG_31528_c0_g2_i1,blat.proc3829899.chain_3060	3	STRG.25927.3,STRG.25927.4,Trinity_GG_31528_c0_g2_i2,blat.proc3829899.chain_3059	4
scaffold_23	spliced_intron	6289122	6289248	-	asmbl_31687,asmbl_31688,asmbl_31690,asmbl_31691,asmbl_31692	none	STRG.25954.1,Trinity_GG_31552_c0_g1_i2,Trinity_GG_31552_c0_g1_i3,Trinity_GG_31552_c0_g1_i4,Trinity_GG_31552_c0_g1_i5,Trinity_GG_31552_c0_g1_i7,blat.proc3829899.chain_3101,blat.proc3829899.chain_3102,blat.proc3829899.chain_3104,blat.proc3829899.chain_3105,blat.proc3829899.chain_3106	11	STRG.25954.2,Trinity_GG_31552_c0_g1_i6,blat.proc3829899.chain_3103,blat.proc3829899.chain_3107	4
scaffold_25	alt_acceptor	4453822	4453823	-	asmbl_34173	none	STRG.27358.3	1	STRG.27358.2	1
scaffold_27	starts_in_intron	2880372	2880372	+	asmbl_36104	none	blat.proc3829885.chain_1820	1	STRG.28753.1,STRG.28753.2,STRG.28753.3,STRG.28753.4,blat.proc3829885.chain_1817,blat.proc3829885.chain_1818,blat.proc3829885.chain_1821,blat.proc3829885.chain_1823	8
scaffold_11	alt_donor	3024724	3024725	+	asmbl_5355	none	STRG.13420.3,blat.proc3829877.chain_1821	2	STRG.13420.1,STRG.13420.2,blat.proc3829877.chain_1818,blat.proc3829877.chain_1819	4
scaffold_298	skipped_exon	743	2048	-	asmbl_38614,asmbl_38616	none	STRG.30237.1,Trinity_GG_33970_c0_g1_i5,blat.proc3829901.chain_3309	3	STRG.30237.2	1
scaffold_26	alternate_exon	1978559	1978585	+	asmbl_35256	none	STRG.27925.1	1	STRG.27925.2	1
scaffold_18	starts_in_intron	2539303	2539303	+	asmbl_20440	none	Trinity_GG_11612_c0_g1_i3,blat.proc3829881.chain_1977	2	STRG.21114.1,STRG.21114.2,blat.proc3829881.chain_1978,blat.proc3829881.chain_1980	4
scaffold_21	spliced_intron	2324183	2324268	-	asmbl_27472	none	STRG.23836.2	1	STRG.23836.1,blat.proc3829899.chain_935,blat.proc3829899.chain_936	3
scaffold_4	starts_in_intron	19600769	19600769	-	asmbl_42215	none	STRG.5542.1	1	STRG.5542.2	1
scaffold_10	skipped_exon	16257718	16258476	+	asmbl_4983,asmbl_4984	none	STRG.13097.1,STRG.13097.3	2	STRG.13097.2,Trinity_GG_7185_c0_g1_i2,blat.proc3829877.chain_1597,blat.proc3829877.chain_1598	4
scaffold_1	spliced_intron	11895149	11895360	+	asmbl_2144	none	STRG.805.1,Trinity_GG_499_c0_g1_i1,blat.proc3829871.chain_895	3	Trinity_GG_499_c0_g1_i2,blat.proc3829871.chain_894	2
scaffold_21	alt_donor	3125160	3125161	-	asmbl_27545	none	STRG.23930.1	1	blat.proc3829899.chain_980	1
scaffold_8	alt_donor	10008462	10008463	+	asmbl_52126	none	STRG.10249.2	1	STRG.10249.3	1
scaffold_9	retained_exon	4898459	4898500	+	asmbl_53949	none	STRG.11053.1	1	blat.proc3829875.chain_3518	1
scaffold_3	starts_in_intron	3751285	3751285	+	asmbl_39934	none	blat.proc3829871.chain_3263	1	STRG.3098.1,blat.proc3829871.chain_3262	2
scaffold_8	retained_intron	18421281	18421426	+	asmbl_52541,asmbl_52542	none	STRG.10733.2,blat.proc3829875.chain_3215	2	STRG.10733.1,blat.proc3829875.chain_3214	2
scaffold_26	ends_in_intron	8994789	8994789	+	asmbl_35717	none	Trinity_GG_15742_c0_g1_i1,blat.proc3829885.chain_1478	2	STRG.28445.1,STRG.28445.2,blat.proc3829885.chain_1477	3
scaffold_2	retained_intron	15273247	15273404	+	asmbl_25037,asmbl_25044	none	blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	2	STRG.2481.1,blat.proc3829871.chain_2524,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2528,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2535,blat.proc3829871.chain_2536	10
scaffold_3	starts_in_intron	4887142	4887142	+	asmbl_39996	none	blat.proc3829871.chain_3322	1	STRG.3179.1	1
scaffold_10	alt_acceptor	12819855	12819856	+	asmbl_4821	none	STRG.12857.2	1	STRG.12857.1,blat.proc3829877.chain_1430,blat.proc3829877.chain_1431	3
scaffold_12	spliced_intron	1066676	1067984	-	asmbl_7426	none	STRG.14439.1,blat.proc3829893.chain_2843	2	Trinity_GG_25065_c0_g1_i2,blat.proc3829893.chain_2841,blat.proc3829893.chain_2842	3
scaffold_8	retained_intron	13132405	13133093	-	asmbl_53271,asmbl_53272	none	STRG.10481.2,blat.proc3829891.chain_2640,blat.proc3829891.chain_2641	3	blat.proc3829891.chain_2642	1
scaffold_21	retained_exon	2953085	2953148	+	asmbl_28451	none	STRG.23906.2,blat.proc3829883.chain_1037	2	STRG.23906.1,blat.proc3829883.chain_1035	2
scaffold_24	skipped_exon	4284868	4285198	-	asmbl_32854	none	STRG.26567.1,blat.proc3829899.chain_3633	2	STRG.26567.2	1
scaffold_1	starts_in_intron	7207847	7207847	+	asmbl_1887	none	blat.proc3829871.chain_580	1	STRG.513.1,blat.proc3829871.chain_581,blat.proc3829871.chain_582	3
scaffold_21	alt_acceptor	4654505	4654506	-	asmbl_27606	none	STRG.23998.2	1	STRG.23998.1,blat.proc3829899.chain_1063	2
scaffold_23	starts_in_intron	5620444	5620444	-	asmbl_31647,asmbl_31650	none	STRG.25917.4,blat.proc3829899.chain_3023	2	STRG.25917.2,STRG.25917.3,Trinity_GG_31507_c0_g2_i3,blat.proc3829899.chain_3024,blat.proc3829899.chain_3025,blat.proc3829899.chain_3026,blat.proc3829899.chain_3027	7
scaffold_16	spliced_intron	4655336	4655551	+	asmbl_16986,asmbl_16987,asmbl_16991	none	STRG.19239.1,STRG.19239.2,blat.proc3829881.chain_70,blat.proc3829881.chain_71,blat.proc3829881.chain_72	5	Trinity_GG_10530_c1_g1_i1,blat.proc3829881.chain_74	2
scaffold_6	skipped_exon	17847263	17848256	+	asmbl_47730	none	STRG.8466.1	1	blat.proc3829875.chain_857	1
scaffold_5	retained_intron	6010030	6010122	+	asmbl_44052	none	STRG.6010.2	1	STRG.6010.1,Trinity_GG_3295_c0_g1_i2,blat.proc3829873.chain_2188	3
scaffold_11	alternate_exon	4673294	4675175	-	asmbl_6592	none	blat.proc3829893.chain_1972	1	Trinity_GG_24574_c0_g1_i1,blat.proc3829893.chain_1974	2
scaffold_15	spliced_intron	13327570	13327726	+	asmbl_14571,asmbl_14577,asmbl_14578,asmbl_14579,asmbl_14582	none	STRG.18763.1,blat.proc3829879.chain_3296,blat.proc3829879.chain_3298,blat.proc3829879.chain_3303,blat.proc3829879.chain_3304	5	Trinity_GG_10264_c0_g1_i4,Trinity_GG_10264_c0_g1_i6,blat.proc3829879.chain_3297,blat.proc3829879.chain_3299	4
scaffold_17	skipped_exon	2355039	2358464	+	asmbl_17767	none	STRG.20017.6	1	STRG.20017.1,blat.proc3829881.chain_852	2
scaffold_3	retained_intron	19407196	19407473	-	asmbl_39598	none	blat.proc3829889.chain_156	1	STRG.4084.1,blat.proc3829889.chain_155,blat.proc3829889.chain_157	3
scaffold_8	spliced_intron	6159495	6159934	-	asmbl_52853,asmbl_52858	none	STRG.10012.1,Trinity_GG_22628_c0_g1_i1,blat.proc3829891.chain_2214,blat.proc3829891.chain_2218	4	STRG.10012.3,blat.proc3829891.chain_2213,blat.proc3829891.chain_2216	3
scaffold_5	alt_donor	10247015	10247016	-	asmbl_45711	none	STRG.6317.1,Trinity_GG_20541_c0_g1_i1,blat.proc3829889.chain_2338	3	Trinity_GG_20541_c0_g1_i2,blat.proc3829889.chain_2339	2
scaffold_28	retained_intron	2404241	2404447	+	asmbl_38057,asmbl_38061,asmbl_38062	none	STRG.29393.1,STRG.29393.3,STRG.29393.4,blat.proc3829885.chain_2482	4	STRG.29393.2,blat.proc3829885.chain_2483,blat.proc3829885.chain_2484,blat.proc3829885.chain_2485	4
scaffold_14	spliced_intron	583521	583652	+	asmbl_11746	none	STRG.16728.2	1	STRG.16728.1,Trinity_GG_9217_c0_g1_i3,blat.proc3829879.chain_1457	3
scaffold_340	spliced_intron	3284	3508	+	asmbl_40963	none	blat.proc3829885.chain_3313	1	STRG.30267.3,STRG.30267.4,Trinity_GG_24051_c1_g1_i1,blat.proc3829893.chain_1095	4
scaffold_9	starts_in_intron	1538068	1538068	+	asmbl_53801	none	Trinity_GG_6023_c0_g1_i2	1	STRG.10833.1	1
scaffold_18	alternate_exon	5985192	5985391	+	asmbl_20677	none	STRG.21346.1	1	blat.proc3829881.chain_2206,blat.proc3829881.chain_2207,blat.proc3829881.chain_2208,blat.proc3829881.chain_2209	4
scaffold_1	alternate_exon	12169056	12173944	+	asmbl_2167,asmbl_2170	none	blat.proc3829871.chain_919,blat.proc3829871.chain_920,blat.proc3829871.chain_921,blat.proc3829871.chain_922	4	STRG.844.1	1
scaffold_19	retained_intron	12105421	12105533	+	asmbl_22549	none	blat.proc3829881.chain_3475	1	STRG.22525.1,blat.proc3829881.chain_3474	2
scaffold_8	spliced_intron	16397415	16397527	-	asmbl_53389	none	STRG.10619.2,blat.proc3829891.chain_2687	2	STRG.10619.1,blat.proc3829891.chain_2684,blat.proc3829891.chain_2685,blat.proc3829891.chain_2686,blat.proc3829891.chain_2688,blat.proc3829891.chain_2689,blat.proc3829891.chain_2691	7
scaffold_24	retained_intron	8749383	8749460	-	asmbl_33093,asmbl_33094,asmbl_33096,asmbl_33097	none	blat.proc3829901.chain_158,blat.proc3829901.chain_159,blat.proc3829901.chain_160,blat.proc3829901.chain_161	4	STRG.26870.1	1
scaffold_20	retained_intron	9825448	9825623	-	asmbl_26982	none	STRG.23515.2,blat.proc3829899.chain_528	2	STRG.23515.1,blat.proc3829899.chain_527,blat.proc3829899.chain_529,blat.proc3829899.chain_530	4
scaffold_5	alternate_exon	990732	990858	+	asmbl_43771	none	STRG.5645.2,blat.proc3829873.chain_1820	2	STRG.5645.1,blat.proc3829873.chain_1821	2
scaffold_5	alt_acceptor	7320450	7320451	+	asmbl_44153	none	STRG.6121.2	1	STRG.6121.1,Trinity_GG_3345_c0_g2_i1,blat.proc3829873.chain_2277	3
scaffold_10	starts_in_intron	11601114	11601114	+	asmbl_4758	none	blat.proc3829877.chain_1384	1	STRG.12807.1,STRG.12807.2,STRG.12807.5,blat.proc3829877.chain_1378,blat.proc3829877.chain_1380,blat.proc3829877.chain_1381,blat.proc3829877.chain_1385	7
scaffold_21	retained_intron	3112262	3112397	-	asmbl_27534,asmbl_27536	none	blat.proc3829899.chain_983,blat.proc3829899.chain_985	2	STRG.23925.1,blat.proc3829899.chain_984,blat.proc3829899.chain_986	3
scaffold_3	spliced_intron	18346916	18347034	-	asmbl_39560	none	STRG.4038.1,blat.proc3829889.chain_77	2	blat.proc3829873.chain_417	1
scaffold_21	starts_in_intron	5469362	5469362	-	asmbl_27680	none	STRG.24064.1	1	STRG.24064.2	1
scaffold_19	spliced_intron	12102324	12102615	-	asmbl_21665	none	STRG.22519.2,blat.proc3829897.chain_3206	2	STRG.22519.1,blat.proc3829897.chain_3205	2
scaffold_7	ends_in_intron	284275	284275	+	asmbl_50427	none	Trinity_GG_4731_c0_g1_i5,blat.proc3829875.chain_1013	2	STRG.8593.1,STRG.8593.2,Trinity_GG_4731_c0_g1_i3	3
scaffold_27	ends_in_intron	4509890	4509890	+	asmbl_36255	none	STRG.28883.2,Trinity_GG_15998_c0_g1_i4,blat.proc3829885.chain_2013	3	STRG.28883.1,blat.proc3829885.chain_2011,blat.proc3829885.chain_2014	3
scaffold_3	alternate_exon	799142	799169	-	asmbl_38635	none	STRG.2910.3	1	STRG.2910.1,STRG.2910.2,STRG.2910.4,blat.proc3829887.chain_2740,blat.proc3829887.chain_2741	5
scaffold_17	starts_in_intron	12829075	12829075	+	asmbl_18415	none	Trinity_GG_11389_c0_g1_i2,blat.proc3829881.chain_1585	2	STRG.20765.1	1
scaffold_28	ends_in_intron	5244594	5244594	+	asmbl_38274	none	Trinity_GG_16447_c1_g1_i1,blat.proc3829885.chain_2780	2	STRG.29653.1,Trinity_GG_16447_c0_g1_i3,blat.proc3829885.chain_2778	3
scaffold_8	starts_in_intron	11065575	11065575	-	asmbl_53125	none	STRG.10316.1,Trinity_GG_22757_c1_g1_i1,blat.proc3829891.chain_2469	3	STRG.10316.2,blat.proc3829891.chain_2468	2
scaffold_13	alternate_exon	357441	357600	-	asmbl_9268	none	STRG.15424.1,Trinity_GG_25667_c0_g1_i7,blat.proc3829895.chain_171	3	Trinity_GG_25667_c0_g1_i4,Trinity_GG_25667_c0_g1_i5,blat.proc3829895.chain_169,blat.proc3829895.chain_170	4
scaffold_12	ends_in_intron	2578754	2578754	+	asmbl_8463	none	STRG.14487.2	1	STRG.14487.1,Trinity_GG_8011_c1_g1_i1,blat.proc3829877.chain_3003	3
scaffold_19	starts_in_intron	825574	825574	-	asmbl_21212	none	blat.proc3829897.chain_2634	1	STRG.21862.1,blat.proc3829897.chain_2631,blat.proc3829897.chain_2632,blat.proc3829897.chain_2633	4
scaffold_19	alt_donor	12575302	12575303	-	asmbl_21731	none	STRG.22574.1	1	STRG.22574.2,STRG.22574.3,blat.proc3829897.chain_3225	3
scaffold_20	alternate_exon	1571288	1571571	+	asmbl_25586	none	STRG.22871.2	1	STRG.22871.1,blat.proc3829881.chain_3698	2
scaffold_24	alt_donor	1078656	1078657	+	asmbl_32076	none	STRG.26363.1,blat.proc3829883.chain_3300	2	STRG.26363.3,blat.proc3829883.chain_3301	2
scaffold_3	retained_intron	18346561	18346729	-	asmbl_39561	none	blat.proc3829873.chain_417	1	STRG.4038.1,blat.proc3829889.chain_77	2
scaffold_5	spliced_intron	966879	967824	-	asmbl_45194	none	STRG.5638.1	1	STRG.5638.2,Trinity_GG_20192_c0_g1_i1,Trinity_GG_20192_c0_g1_i3,Trinity_GG_20192_c1_g1_i1,blat.proc3829889.chain_1743,blat.proc3829889.chain_1744	6
scaffold_22	alt_donor	2399086	2399087	+	asmbl_29232,asmbl_29237	none	STRG.24765.1,blat.proc3829883.chain_1744	2	STRG.24765.2,blat.proc3829883.chain_1745,blat.proc3829883.chain_1746	3
scaffold_11	retained_exon	11936928	11937722	-	asmbl_7023	none	STRG.14160.3	1	STRG.14160.1	1
scaffold_1	ends_in_intron	20134789	20134789	-	asmbl_1171,asmbl_1172	none	STRG.1381.2,STRG.1381.3	2	STRG.1381.1	1
scaffold_19	alt_acceptor	6372366	6372367	-	asmbl_21414	none	STRG.22145.2	1	STRG.22145.1,blat.proc3829897.chain_2863,blat.proc3829897.chain_2864	3
scaffold_2	alt_acceptor	923018	923019	+	asmbl_24174	none	blat.proc3829871.chain_1535	1	STRG.1569.1,STRG.1569.3,STRG.1569.4,blat.proc3829871.chain_1534,blat.proc3829871.chain_1537,blat.proc3829871.chain_1542	6
scaffold_21	alternate_exon	254803	254929	-	asmbl_27318,asmbl_27319	none	STRG.23718.5,STRG.23718.6	2	STRG.23718.1,STRG.23718.2,blat.proc3829899.chain_793	3
scaffold_1	starts_in_intron	2748682	2748682	-	asmbl_125	none	Trinity_GG_17107_c0_g1_i2,blat.proc3829887.chain_57	2	STRG.173.5,Trinity_GG_17107_c0_g1_i3	2
scaffold_15	alt_acceptor	13573673	13573674	-	asmbl_15661	none	STRG.18777.2,blat.proc3829895.chain_3535	2	STRG.18777.1	1
scaffold_20	alt_acceptor	11503141	11503142	+	asmbl_26221	none	STRG.23641.2	1	STRG.23641.1,Trinity_GG_13041_c0_g1_i2,blat.proc3829883.chain_686	3
scaffold_2	alternate_exon	14203308	14203356	-	asmbl_23590	none	STRG.2411.4	1	STRG.2411.1,STRG.2411.3,blat.proc3829887.chain_2297,blat.proc3829887.chain_2298,blat.proc3829887.chain_2299	5
scaffold_21	skipped_exon	10329322	10330565	-	asmbl_28061	none	STRG.24486.2	1	STRG.24486.3	1
scaffold_19	spliced_intron	10303465	10303671	+	asmbl_22449	none	STRG.22402.1,blat.proc3829881.chain_3351	2	STRG.22402.2,blat.proc3829881.chain_3353	2
scaffold_1	spliced_intron	4226072	4226335	+	asmbl_1636,asmbl_1640	none	STRG.249.1,blat.proc3829871.chain_306,blat.proc3829871.chain_307	3	Trinity_GG_179_c0_g1_i2,blat.proc3829871.chain_305	2
scaffold_13	spliced_intron	3999070	3999310	-	asmbl_9563,asmbl_9564	none	STRG.15713.1,STRG.15713.2,blat.proc3829895.chain_459,blat.proc3829895.chain_460	4	blat.proc3829895.chain_461	1
scaffold_5	retained_intron	10529716	10530671	+	asmbl_44345,asmbl_44346	none	STRG.6331.1,Trinity_GG_3449_c0_g1_i1,Trinity_GG_3449_c0_g1_i2,blat.proc3829873.chain_2469,blat.proc3829873.chain_2470	5	STRG.6331.2	1
scaffold_27	skipped_exon	2814408	2815090	+	asmbl_36081	none	STRG.28742.4	1	STRG.28742.3	1
scaffold_17	retained_exon	10037315	10037339	-	asmbl_19275	none	STRG.20608.6	1	STRG.20608.2	1
scaffold_5	retained_intron	3935999	3936105	+	asmbl_43924	none	STRG.5856.1,Trinity_GG_3221_c0_g1_i3,blat.proc3829873.chain_2028	3	blat.proc3829873.chain_2029	1
scaffold_17	retained_intron	14325639	14325766	-	asmbl_19472	none	blat.proc3829897.chain_1795	1	STRG.20895.1,blat.proc3829897.chain_1796	2
scaffold_23	starts_in_intron	6334253	6334253	+	asmbl_30908	none	Trinity_GG_14320_c0_g1_i1,blat.proc3829883.chain_2838	2	STRG.25966.3,blat.proc3829883.chain_2835,blat.proc3829883.chain_2836,blat.proc3829883.chain_2837	4
scaffold_7	alt_donor	130185	130186	-	asmbl_49482,asmbl_49486	none	blat.proc3829891.chain_992,blat.proc3829891.chain_998	2	STRG.8585.1,STRG.8585.4,STRG.8585.8	3
scaffold_5	alternate_exon	18759305	18759420	+	asmbl_44934	none	STRG.6997.1,Trinity_GG_3850_c0_g1_i1,blat.proc3829873.chain_3153	3	STRG.6997.2	1
scaffold_28	retained_intron	5230739	5230823	-	asmbl_37585	none	STRG.29650.2	1	Trinity_GG_33578_c0_g1_i9,blat.proc3829901.chain_2674	2
scaffold_13	starts_in_intron	2294330	2294330	+	asmbl_10555	none	STRG.15531.3,Trinity_GG_8557_c2_g1_i1,blat.proc3829879.chain_261	3	STRG.15531.1,blat.proc3829879.chain_256,blat.proc3829879.chain_257,blat.proc3829879.chain_258	4
scaffold_3	skipped_exon	17536205	17536591	-	asmbl_39518,asmbl_39520	none	STRG.3987.3,blat.proc3829889.chain_91,blat.proc3829889.chain_92	3	STRG.3987.1,STRG.3987.2,STRG.3987.4,blat.proc3829889.chain_89,blat.proc3829889.chain_90	5
scaffold_18	retained_exon	3916064	3916386	-	asmbl_19821	none	STRG.21192.5	1	STRG.21192.4	1
scaffold_26	starts_in_intron	8987269	8987269	+	asmbl_35715	none	blat.proc3829885.chain_1485	1	STRG.28444.1,blat.proc3829885.chain_1486	2
scaffold_12	starts_in_intron	4786032	4786032	-	asmbl_7585,asmbl_7587	none	STRG.14646.5,blat.proc3829893.chain_3021	2	STRG.14646.2,STRG.14646.3,STRG.14646.4,blat.proc3829893.chain_3017,blat.proc3829893.chain_3018,blat.proc3829893.chain_3019,blat.proc3829893.chain_3025	7
scaffold_8	spliced_intron	14569488	14569706	+	asmbl_52369	none	STRG.10535.1,blat.proc3829875.chain_3054	2	blat.proc3829875.chain_3057	1
scaffold_1	alternate_exon	9194469	9194506	+	asmbl_1953,asmbl_1954	none	STRG.608.1,STRG.608.2,Trinity_GG_384_c0_g1_i1,Trinity_GG_384_c0_g1_i2,blat.proc3829871.chain_666,blat.proc3829871.chain_667	6	STRG.608.3	1
scaffold_3	spliced_intron	17364766	17365193	-	asmbl_39497,asmbl_39501,asmbl_39502	none	STRG.3972.3,blat.proc3829889.chain_25,blat.proc3829889.chain_31	3	blat.proc3829889.chain_22,blat.proc3829889.chain_27	2
scaffold_25	alternate_exon	7344357	7344644	+	asmbl_33669	none	STRG.27572.3	1	STRG.27572.1,blat.proc3829885.chain_549	2
scaffold_27	starts_in_intron	6262542	6262542	+	asmbl_36350	none	Trinity_GG_16036_c0_g1_i3,blat.proc3829885.chain_2094	2	STRG.28995.1,STRG.28995.2,STRG.28995.3,blat.proc3829885.chain_2095,blat.proc3829885.chain_2096,blat.proc3829885.chain_2097,blat.proc3829885.chain_2098	7
scaffold_10	retained_intron	11911250	11911410	-	asmbl_3702,asmbl_3703	none	STRG.12817.2,Trinity_GG_24166_c0_g1_i3,Trinity_GG_24166_c0_g1_i5,blat.proc3829893.chain_1282,blat.proc3829893.chain_1286	5	STRG.12817.1,blat.proc3829893.chain_1283,blat.proc3829893.chain_1285	3
scaffold_16	starts_in_intron	434014	434014	-	asmbl_16052	none	blat.proc3829897.chain_25	1	STRG.19039.1,blat.proc3829897.chain_20,blat.proc3829897.chain_21,blat.proc3829897.chain_26	4
scaffold_10	spliced_intron	2668937	2669198	+	asmbl_4266	none	STRG.12074.1,blat.proc3829877.chain_804	2	blat.proc3829877.chain_805	1
scaffold_5	alt_acceptor	9163669	9163670	+	asmbl_44281	none	STRG.6246.1,blat.proc3829873.chain_2404	2	STRG.6246.2	1
scaffold_20	retained_exon	10249290	10249425	-	asmbl_27021	none	STRG.23558.1,blat.proc3829899.chain_558	2	STRG.23558.2,blat.proc3829899.chain_556	2
scaffold_1	ends_in_intron	11551735	11551735	-	asmbl_638	none	STRG.762.3,blat.proc3829887.chain_607	2	STRG.762.2	1
scaffold_7	retained_intron	1386162	1387009	-	asmbl_49532	none	blat.proc3829891.chain_921,blat.proc3829891.chain_926	2	STRG.8638.1,STRG.8638.2,blat.proc3829891.chain_923,blat.proc3829891.chain_924,blat.proc3829891.chain_927	5
scaffold_1	alt_donor	4234172	4234173	+	asmbl_1645,asmbl_1648,asmbl_1650,asmbl_1653,asmbl_1654	none	STRG.253.1,STRG.253.4,blat.proc3829871.chain_224,blat.proc3829871.chain_227,blat.proc3829871.chain_228,blat.proc3829871.chain_229	6	STRG.253.2,STRG.253.3,blat.proc3829871.chain_225,blat.proc3829871.chain_230,blat.proc3829871.chain_231,blat.proc3829871.chain_232,blat.proc3829871.chain_233	7
scaffold_9	retained_intron	11837471	11837624	-	asmbl_55290	none	blat.proc3829891.chain_3600	1	STRG.11489.1,STRG.11489.2,STRG.11489.3,blat.proc3829891.chain_3601,blat.proc3829891.chain_3602,blat.proc3829891.chain_3603,blat.proc3829891.chain_3604,blat.proc3829891.chain_3605	8
scaffold_20	alternate_exon	9897914	9898105	+	asmbl_26064	none	STRG.23516.1,Trinity_GG_13004_c0_g1_i2,blat.proc3829883.chain_628	3	STRG.23516.2,Trinity_GG_13004_c0_g1_i1,blat.proc3829883.chain_629	3
scaffold_2	alt_acceptor	11598062	11598063	+	asmbl_24795	none	STRG.2273.1,blat.proc3829871.chain_2298	2	STRG.2273.2,STRG.2273.3,blat.proc3829871.chain_2300,blat.proc3829871.chain_2301,blat.proc3829871.chain_2303	5
scaffold_17	spliced_intron	8044838	8044930	-	asmbl_19112	none	STRG.20411.2,blat.proc3829897.chain_1392	2	STRG.20411.1,Trinity_GG_28502_c0_g1_i3,blat.proc3829897.chain_1390,blat.proc3829897.chain_1391	4
scaffold_1	ends_in_intron	4874449	4874449	-	asmbl_224	none	STRG.296.3	1	STRG.296.1	1
scaffold_18	alt_donor	3634675	3634676	+	asmbl_20493	none	STRG.21169.2,blat.proc3829881.chain_2052	2	STRG.21169.1,STRG.21169.3,blat.proc3829881.chain_2050,blat.proc3829881.chain_2051	4
scaffold_2	retained_intron	16288201	16288293	+	asmbl_25143	none	blat.proc3829871.chain_2751	1	STRG.2560.1,STRG.2560.2,blat.proc3829871.chain_2750,blat.proc3829871.chain_2752	4
scaffold_10	alt_acceptor	1173804	1173805	+	asmbl_4196,asmbl_4197,asmbl_4198,asmbl_4201	none	STRG.12000.1,STRG.12000.2,STRG.12000.3,blat.proc3829877.chain_708,blat.proc3829877.chain_709,blat.proc3829877.chain_710,blat.proc3829877.chain_711	7	STRG.12000.4	1
scaffold_4	alt_acceptor	17631817	17631818	-	asmbl_42044	none	STRG.5362.3	1	STRG.5362.1,STRG.5362.2,blat.proc3829889.chain_1350	3
scaffold_18	alt_acceptor	1877150	1877151	+	asmbl_20415,asmbl_20416	none	STRG.21065.1,STRG.21065.2,blat.proc3829881.chain_1956	3	STRG.21065.3	1
scaffold_15	alternate_exon	16367347	16367611	-	asmbl_15849	none	STRG.18980.2	1	STRG.18980.1,Trinity_GG_27641_c0_g1_i1,Trinity_GG_27641_c0_g1_i2,blat.proc3829895.chain_3697,blat.proc3829895.chain_3698	5
scaffold_16	ends_in_intron	7946818	7946818	-	asmbl_16387	none	STRG.19428.2,blat.proc3829897.chain_441	2	STRG.19428.1	1
scaffold_8	alt_acceptor	9870744	9870745	+	asmbl_52102,asmbl_52103	none	STRG.10225.5,STRG.10225.6	2	STRG.10225.2,STRG.10225.4,blat.proc3829875.chain_2691,blat.proc3829875.chain_2692,blat.proc3829875.chain_2693,blat.proc3829875.chain_2694,blat.proc3829875.chain_2696,blat.proc3829875.chain_2697	8
scaffold_18	alt_acceptor	4442791	4442792	+	asmbl_20546	none	STRG.21223.1,blat.proc3829881.chain_2127	2	STRG.21223.2,blat.proc3829881.chain_2126	2
scaffold_13	alt_acceptor	8026566	8026567	-	asmbl_9893,asmbl_9894	none	STRG.16071.1,blat.proc3829895.chain_853,blat.proc3829895.chain_854	3	STRG.16071.2	1
scaffold_23	alt_acceptor	1125066	1125067	+	asmbl_30614	none	STRG.25572.2,blat.proc3829883.chain_2475	2	STRG.25572.1,blat.proc3829883.chain_2477	2
scaffold_14	skipped_exon	14147812	14148982	+	asmbl_12511,asmbl_12515	none	STRG.17676.3,STRG.17676.5	2	STRG.17676.1,STRG.17676.2,blat.proc3829879.chain_2283,blat.proc3829879.chain_2284	4
scaffold_25	ends_in_intron	3115514	3115514	-	asmbl_34087	none	Trinity_GG_32225_c0_g2_i1	1	STRG.27242.1	1
scaffold_9	spliced_intron	13297054	13297098	-	asmbl_55385,asmbl_55386,asmbl_55387	none	STRG.11625.4,STRG.11625.6,STRG.11625.7	3	STRG.11625.1,STRG.11625.2,STRG.11625.3,STRG.11625.5,Trinity_GG_23413_c0_g1_i1,blat.proc3829891.chain_3717	6
scaffold_25	spliced_intron	9338119	9338227	+	asmbl_33799,asmbl_33800,asmbl_33801	none	STRG.27743.1,blat.proc3829885.chain_770,blat.proc3829885.chain_773,blat.proc3829885.chain_774	4	Trinity_GG_15314_c0_g1_i3,blat.proc3829885.chain_771,blat.proc3829885.chain_772,blat.proc3829885.chain_775	4
scaffold_28	alt_acceptor	6515706	6515707	-	asmbl_37674	none	STRG.29726.1	1	STRG.29726.3	1
scaffold_13	starts_in_intron	7109163	7109163	+	asmbl_11001	none	Trinity_GG_8796_c0_g1_i9	1	STRG.15994.1,STRG.15994.2,STRG.15994.3,Trinity_GG_8796_c0_g1_i10,blat.proc3829879.chain_723	5
scaffold_1611	spliced_intron	1827	1982	+	asmbl_17636	none	STRG.30612.1	1	Trinity_GG_16915_c0_g1_i2,blat.proc3829885.chain_3541	2
scaffold_4	ends_in_intron	12568300	12568300	-	asmbl_41673	none	blat.proc3829889.chain_959	1	STRG.4894.1,STRG.4894.2,blat.proc3829889.chain_958	3
scaffold_12	alt_acceptor	4205331	4205332	+	asmbl_8547	none	STRG.14587.3	1	STRG.14587.2,Trinity_GG_8068_c0_g1_i1,blat.proc3829877.chain_3110	3
scaffold_11	alt_donor	3775807	3775808	-	asmbl_6555,asmbl_6557	none	STRG.13488.3,STRG.13488.4	2	STRG.13488.1,blat.proc3829893.chain_1962	2
scaffold_4	spliced_intron	4120774	4120939	-	asmbl_41236,asmbl_41237	none	STRG.4323.1,STRG.4323.2,blat.proc3829889.chain_476	3	STRG.4323.3,Trinity_GG_19456_c0_g1_i2,Trinity_GG_19456_c0_g1_i5,blat.proc3829889.chain_474,blat.proc3829889.chain_475,blat.proc3829889.chain_477	6
scaffold_6	spliced_intron	13573595	13573738	-	asmbl_48850,asmbl_48851,asmbl_48852	none	STRG.8093.2,STRG.8093.3,STRG.8093.4,blat.proc3829891.chain_414	4	Trinity_GG_21620_c1_g1_i2,blat.proc3829891.chain_417	2
scaffold_4	ends_in_intron	4679774	4679774	+	asmbl_42624	none	Trinity_GG_2431_c0_g1_i3,blat.proc3829873.chain_754	2	STRG.4365.1,blat.proc3829873.chain_753	2
scaffold_12	spliced_intron	5452318	5452775	-	asmbl_7625	none	STRG.14687.2	1	STRG.14687.1	1
scaffold_17	skipped_exon	607337	608734	-	asmbl_18674	none	STRG.19894.2	1	STRG.19894.1,STRG.19894.3	2
scaffold_6	alt_acceptor	600723	600724	-	asmbl_47991,asmbl_47994,asmbl_47995	none	STRG.7116.1,STRG.7116.2,STRG.7116.4,blat.proc3829889.chain_3098	4	STRG.7116.3,STRG.7116.5,blat.proc3829889.chain_3099	3
scaffold_13	alt_acceptor	7218244	7218245	+	asmbl_11009,asmbl_11013	none	blat.proc3829879.chain_693,blat.proc3829879.chain_696	2	STRG.16002.1,blat.proc3829879.chain_695,blat.proc3829879.chain_698,blat.proc3829879.chain_699,blat.proc3829879.chain_700,blat.proc3829879.chain_701	6
scaffold_27	retained_exon	2830935	2831768	+	asmbl_36085	none	STRG.28748.3,blat.proc3829885.chain_1826	2	STRG.28748.1,STRG.28748.2,blat.proc3829885.chain_1824,blat.proc3829885.chain_1828	4
scaffold_1	spliced_intron	18485288	18485991	-	asmbl_1110	none	blat.proc3829887.chain_1211	1	STRG.1300.1,STRG.1300.3	2
scaffold_10	ends_in_intron	16529554	16529554	+	asmbl_4991	none	blat.proc3829877.chain_1618	1	STRG.13112.1,blat.proc3829877.chain_1619,blat.proc3829877.chain_1620,blat.proc3829877.chain_1621,blat.proc3829877.chain_1622	5
scaffold_20	retained_intron	11142153	11142251	+	asmbl_26171,asmbl_26172	none	STRG.23625.1,Trinity_GG_13048_c0_g1_i3,Trinity_GG_13048_c0_g1_i5,blat.proc3829883.chain_697,blat.proc3829883.chain_698	5	STRG.23625.2,Trinity_GG_13048_c0_g1_i4,blat.proc3829883.chain_696	3
scaffold_7	starts_in_intron	6035692	6035692	+	asmbl_50722	none	Trinity_GG_4914_c1_g1_i1,blat.proc3829875.chain_1342	2	STRG.8898.1,STRG.8898.2,Trinity_GG_4914_c0_g1_i1,Trinity_GG_4914_c0_g1_i2,Trinity_GG_4914_c0_g1_i5,blat.proc3829875.chain_1338,blat.proc3829875.chain_1340,blat.proc3829875.chain_1341	8
scaffold_8	ends_in_intron	12320825	12320825	-	asmbl_53188	none	Trinity_GG_22791_c0_g1_i4,blat.proc3829891.chain_2528	2	STRG.10399.1,blat.proc3829891.chain_2530,blat.proc3829891.chain_2531	3
scaffold_13	alt_acceptor	16250638	16250639	+	asmbl_11543	none	STRG.16665.1,blat.proc3829879.chain_1371,blat.proc3829879.chain_1401,blat.proc3829879.chain_1403	4	STRG.16665.2,blat.proc3829879.chain_1404	2
scaffold_6	ends_in_intron	8581138	8581138	+	asmbl_47087	none	STRG.7732.1	1	STRG.7732.2,STRG.7732.3,blat.proc3829875.chain_111,blat.proc3829875.chain_112	4
scaffold_15	alt_donor	15569530	15569531	+	asmbl_14758	none	STRG.18941.1,Trinity_GG_10377_c0_g1_i1,blat.proc3829879.chain_3522	3	STRG.18941.2,blat.proc3829879.chain_3521	2
scaffold_19	starts_in_intron	9386923	9386923	+	asmbl_22383	none	blat.proc3829881.chain_3277	1	STRG.22356.1,blat.proc3829881.chain_3276	2
scaffold_10	spliced_intron	5536926	5537113	+	asmbl_4462	none	STRG.12363.2,blat.proc3829877.chain_1005	2	STRG.12363.1,blat.proc3829877.chain_1004	2
scaffold_23	starts_in_intron	4229523	4229523	-	asmbl_31569,asmbl_31570,asmbl_31574	none	STRG.25818.1,STRG.25818.5,blat.proc3829899.chain_2945,blat.proc3829899.chain_2949	4	STRG.25818.2	1
scaffold_24	starts_in_intron	9101382	9101382	-	asmbl_33124	none	blat.proc3829901.chain_201	1	STRG.26915.2,Trinity_GG_32059_c0_g1_i1,blat.proc3829901.chain_202	3
scaffold_11	starts_in_intron	14585551	14585551	+	asmbl_6078,asmbl_6079	none	blat.proc3829877.chain_2754,blat.proc3829877.chain_2755	2	STRG.14246.1,STRG.14246.2,STRG.14246.3,blat.proc3829877.chain_2756	4
scaffold_28	alternate_exon	5391484	5392602	+	asmbl_38281,asmbl_38283	none	STRG.29664.3,Trinity_GG_16450_c0_g1_i7,blat.proc3829885.chain_2783	3	blat.proc3829885.chain_2786	1
scaffold_7	ends_in_intron	4887424	4887424	+	asmbl_50638	none	blat.proc3829875.chain_1237	1	STRG.8824.1,STRG.8824.2,blat.proc3829875.chain_1239,blat.proc3829875.chain_1240	4
scaffold_11	skipped_exon	9699517	9700110	-	asmbl_6934	none	STRG.13979.1,Trinity_GG_24840_c1_g1_i2,blat.proc3829893.chain_2427	3	Trinity_GG_24840_c1_g1_i1,blat.proc3829893.chain_2428	2
scaffold_1	retained_exon	6328573	6328587	+	asmbl_1822,asmbl_1823	none	STRG.428.2,STRG.428.3,blat.proc3829871.chain_474	3	STRG.428.1,Trinity_GG_267_c0_g1_i2,blat.proc3829871.chain_473	3
scaffold_18	retained_exon	246220	246574	-	asmbl_19608	none	STRG.20968.2,blat.proc3829897.chain_1858	2	STRG.20968.1,blat.proc3829897.chain_1857	2
scaffold_28	alt_acceptor	3069110	3069111	+	asmbl_38128	none	blat.proc3829885.chain_2598	1	STRG.29493.1,blat.proc3829885.chain_2597	2
scaffold_9	alt_donor	9853059	9853060	+	asmbl_54249,asmbl_54252	none	STRG.11344.1,blat.proc3829877.chain_63,blat.proc3829877.chain_67	3	STRG.11344.3	1
scaffold_25	retained_intron	6067602	6067783	-	asmbl_34291,asmbl_34292,asmbl_34293	none	blat.proc3829901.chain_716,blat.proc3829901.chain_718,blat.proc3829901.chain_719	3	blat.proc3829901.chain_721	1
scaffold_7	ends_in_intron	3575837	3575837	-	asmbl_49616	none	Trinity_GG_22009_c0_g1_i1,blat.proc3829891.chain_1115	2	STRG.8745.1,blat.proc3829891.chain_1114	2
scaffold_2	retained_intron	6350944	6351030	-	asmbl_23221	none	Trinity_GG_18078_c0_g1_i4,blat.proc3829887.chain_1764	2	STRG.2000.1,Trinity_GG_18078_c0_g1_i1,blat.proc3829887.chain_1763	3
scaffold_7	retained_intron	4931699	4933377	+	asmbl_50653	none	STRG.8834.3,Trinity_GG_4880_c0_g2_i1,blat.proc3829875.chain_1284	3	blat.proc3829875.chain_1280	1
scaffold_26	alt_donor	969069	969070	-	asmbl_34674	none	STRG.27878.2	1	STRG.27878.1,blat.proc3829901.chain_1136	2
scaffold_10	retained_intron	9043353	9045014	-	asmbl_3565	none	STRG.12645.2,Trinity_GG_24079_c0_g1_i2,blat.proc3829893.chain_1153	3	STRG.12645.1,blat.proc3829893.chain_1156	2
scaffold_26	alt_acceptor	4802730	4802731	-	asmbl_34867	none	STRG.28178.2,Trinity_GG_32780_c0_g1_i3,blat.proc3829901.chain_1372	3	STRG.28178.1	1
scaffold_22	alt_acceptor	10237275	10237276	-	asmbl_30356,asmbl_30357	none	STRG.25350.1,STRG.25350.3,blat.proc3829899.chain_2420,blat.proc3829899.chain_2421	4	STRG.25350.2	1
scaffold_1	retained_intron	22133297	22134524	+	asmbl_2671	none	STRG.1479.2,Trinity_GG_848_c1_g2_i1,blat.proc3829871.chain_1517	3	STRG.1479.1	1
scaffold_10	retained_exon	5393824	5393937	-	asmbl_3273,asmbl_3274	none	STRG.12357.1,STRG.12357.2,blat.proc3829893.chain_823,blat.proc3829893.chain_825	4	blat.proc3829893.chain_824	1
scaffold_18	retained_intron	281385	282108	+	asmbl_20311	none	STRG.20973.2,Trinity_GG_11537_c1_g1_i1,blat.proc3829881.chain_1824	3	STRG.20973.1,blat.proc3829881.chain_1822	2
scaffold_24	retained_intron	5939387	5939564	+	asmbl_32267,asmbl_32276	none	Trinity_GG_14738_c0_g2_i1,blat.proc3829883.chain_3544,blat.proc3829883.chain_3550	3	STRG.26645.1,blat.proc3829883.chain_3535,blat.proc3829883.chain_3537,blat.proc3829883.chain_3542,blat.proc3829883.chain_3543,blat.proc3829883.chain_3545,blat.proc3829883.chain_3547,blat.proc3829883.chain_3548	8
scaffold_2	spliced_intron	3764034	3764093	-	asmbl_23024	none	blat.proc3829887.chain_1630	1	STRG.1811.1	1
scaffold_7	spliced_intron	4545952	4546317	+	asmbl_50626,asmbl_50627	none	STRG.8819.1,blat.proc3829875.chain_1242,blat.proc3829875.chain_1244	3	blat.proc3829875.chain_1241,blat.proc3829875.chain_1243	2
scaffold_10	spliced_intron	3757724	3757863	-	asmbl_3135	none	STRG.12200.3	1	STRG.12200.1,STRG.12200.2	2
scaffold_12	starts_in_intron	13165759	13165759	-	asmbl_8058	none	Trinity_GG_25506_c0_g1_i2,blat.proc3829893.chain_3606	2	STRG.15188.1,STRG.15188.2,blat.proc3829893.chain_3607	3
scaffold_1	spliced_intron	22129065	22129294	+	asmbl_2669	none	STRG.1476.2	1	STRG.1476.1	1
scaffold_8	alt_acceptor	7392373	7392374	+	asmbl_51971	none	STRG.10052.2	1	STRG.10052.1,blat.proc3829875.chain_2480	2
scaffold_12	alternate_exon	1972884	1973075	-	asmbl_7446	none	STRG.14475.2	1	STRG.14475.1,blat.proc3829893.chain_2858	2
scaffold_26	starts_in_intron	3720106	3720106	+	asmbl_35354	none	Trinity_GG_15443_c0_g1_i2,blat.proc3829885.chain_964	2	STRG.28036.1,Trinity_GG_15443_c0_g1_i1,blat.proc3829885.chain_965	3
scaffold_20	alt_acceptor	967223	967224	+	asmbl_25552	none	Trinity_GG_12589_c0_g1_i3,Trinity_GG_12589_c0_g1_i4	2	STRG.22792.1,STRG.22792.2,STRG.22792.3	3
scaffold_9	alt_donor	7032390	7032391	+	asmbl_54113	none	blat.proc3829875.chain_3719	1	STRG.11207.1,blat.proc3829875.chain_3720	2
scaffold_13	alt_acceptor	3098884	3098885	-	asmbl_9476	none	STRG.15604.2,blat.proc3829895.chain_333	2	STRG.15604.1	1
scaffold_12	retained_exon	14107535	14107552	-	asmbl_8107,asmbl_8113,asmbl_8114	none	STRG.15225.1,blat.proc3829893.chain_3678,blat.proc3829893.chain_3680,blat.proc3829893.chain_3682	4	Trinity_GG_25546_c0_g1_i1,Trinity_GG_25546_c0_g1_i2,Trinity_GG_25546_c0_g1_i8,blat.proc3829893.chain_3675,blat.proc3829893.chain_3677,blat.proc3829893.chain_3679	6
scaffold_1	retained_intron	5748213	5748415	+	asmbl_1776,asmbl_1777	none	STRG.373.1,STRG.373.3,blat.proc3829871.chain_435,blat.proc3829871.chain_437	4	STRG.373.2,Trinity_GG_248_c0_g1_i1,blat.proc3829871.chain_436	3
scaffold_9	retained_intron	16561348	16562614	-	asmbl_55544,asmbl_55546,asmbl_55547	none	STRG.11797.2,STRG.11797.3,STRG.11797.6,Trinity_GG_23481_c0_g2_i1,blat.proc3829893.chain_82	5	STRG.11797.1,STRG.11797.4,STRG.11797.5,Trinity_GG_23481_c0_g3_i5,Trinity_GG_23481_c0_g3_i6,blat.proc3829893.chain_85,blat.proc3829893.chain_88	7
scaffold_6	spliced_intron	3056262	3056806	+	asmbl_46743,asmbl_46744,asmbl_46745,asmbl_46746,asmbl_46750,asmbl_46751,asmbl_46752	none	STRG.7308.1,STRG.7308.2,blat.proc3829873.chain_3438,blat.proc3829873.chain_3439,blat.proc3829873.chain_3440,blat.proc3829873.chain_3444,blat.proc3829873.chain_3445,blat.proc3829873.chain_3446	8	blat.proc3829873.chain_3443	1
scaffold_23	alt_donor	10331164	10331165	+	asmbl_31143	none	STRG.26228.2	1	STRG.26228.3	1
scaffold_16	retained_intron	3563930	3564366	-	asmbl_16155,asmbl_16156	none	STRG.19157.1,blat.proc3829897.chain_187,blat.proc3829897.chain_188	3	STRG.19157.2,blat.proc3829897.chain_189	2
scaffold_14	retained_intron	15464262	15464367	+	asmbl_12585	none	Trinity_GG_9767_c1_g1_i2,blat.proc3829879.chain_2442	2	STRG.17770.1,Trinity_GG_9767_c1_g1_i1,blat.proc3829879.chain_2441	3
scaffold_21	spliced_intron	5110399	5110504	-	asmbl_27630	none	STRG.24033.1,blat.proc3829899.chain_1099	2	blat.proc3829899.chain_1100	1
scaffold_9	alternate_exon	573488	573796	+	asmbl_53754	none	STRG.10779.1	1	STRG.10779.2,STRG.10779.3,Trinity_GG_5955_c2_g1_i1,blat.proc3829875.chain_3224	4
scaffold_25	starts_in_intron	8179623	8179623	-	asmbl_34397	none	blat.proc3829901.chain_930	1	STRG.27637.1,blat.proc3829901.chain_931	2
scaffold_21	alt_acceptor	1061956	1061957	+	asmbl_28345,asmbl_28347	none	STRG.23771.1,STRG.23771.3,Trinity_GG_13124_c0_g1_i5,blat.proc3829883.chain_848,blat.proc3829883.chain_849	5	STRG.23771.2,STRG.23771.4	2
scaffold_16	spliced_intron	5395039	5395131	+	asmbl_17004,asmbl_17005	none	STRG.19275.1,STRG.19275.2,Trinity_GG_10554_c0_g1_i2,blat.proc3829881.chain_135,blat.proc3829881.chain_137	5	blat.proc3829881.chain_136	1
scaffold_1	alternate_exon	22369668	22371257	+	asmbl_2677,asmbl_2678	none	STRG.1490.3,STRG.1490.5	2	STRG.1490.6	1
scaffold_6	retained_exon	19115124	19115246	-	asmbl_49233,asmbl_49234,asmbl_49237	none	STRG.8568.1,STRG.8568.3,Trinity_GG_21904_c0_g1_i1,Trinity_GG_21904_c0_g1_i3,Trinity_GG_21904_c0_g1_i5,blat.proc3829891.chain_897,blat.proc3829891.chain_898	7	STRG.8568.4,STRG.8568.5,Trinity_GG_21904_c0_g1_i4	3
scaffold_15	starts_in_intron	4959953	4959953	+	asmbl_14117	none	Trinity_GG_9948_c2_g1_i1,blat.proc3829879.chain_2767	2	STRG.18193.1,blat.proc3829879.chain_2759,blat.proc3829879.chain_2761,blat.proc3829879.chain_2765	4
scaffold_6	alternate_exon	2528575	2528949	-	asmbl_48088	none	STRG.7249.1,Trinity_GG_21056_c0_g1_i2,blat.proc3829889.chain_3228	3	Trinity_GG_21056_c0_g1_i1,blat.proc3829889.chain_3227	2
scaffold_13	retained_exon	8805849	8805902	-	asmbl_9943,asmbl_9944,asmbl_9945	none	blat.proc3829895.chain_940,blat.proc3829895.chain_941,blat.proc3829895.chain_943	3	blat.proc3829895.chain_944	1
scaffold_6	spliced_intron	17883201	17883316	-	asmbl_49145,asmbl_49146,asmbl_49150,asmbl_49151	none	STRG.8474.1,STRG.8474.3,STRG.8474.4,Trinity_GG_21830_c0_g1_i2,Trinity_GG_21830_c0_g1_i3,blat.proc3829891.chain_764,blat.proc3829891.chain_767	7	Trinity_GG_21830_c0_g2_i1,blat.proc3829891.chain_768	2
scaffold_3	alt_acceptor	7927365	7927366	+	asmbl_40144	none	STRG.3376.1	1	STRG.3376.2	1
scaffold_13	retained_exon	15037855	15037979	-	asmbl_10188	none	STRG.16541.2,blat.proc3829895.chain_1254	2	STRG.16541.1,blat.proc3829895.chain_1255	2
scaffold_5	starts_in_intron	9583031	9583031	-	asmbl_45673,asmbl_45674	none	blat.proc3829889.chain_2362,blat.proc3829889.chain_2365	2	STRG.6268.1,blat.proc3829889.chain_2363,blat.proc3829889.chain_2364	3
scaffold_28	alternate_exon	5391043	5391172	+	asmbl_38285	none	blat.proc3829885.chain_2786	1	STRG.29664.3,Trinity_GG_16450_c0_g1_i7,blat.proc3829885.chain_2783	3
scaffold_4	alt_acceptor	1980875	1980876	+	asmbl_42480	none	STRG.4223.2	1	STRG.4223.1,blat.proc3829873.chain_579	2
scaffold_13	alternate_exon	6136220	6137466	-	asmbl_9734	none	STRG.15904.2	1	STRG.15904.3,Trinity_GG_25956_c0_g1_i1,blat.proc3829895.chain_670	3
scaffold_14	starts_in_intron	7498805	7498805	+	asmbl_12149	none	blat.proc3829879.chain_1835	1	STRG.17177.1,STRG.17177.2,STRG.17177.3,STRG.17177.4,blat.proc3829879.chain_1834	5
scaffold_6	skipped_exon	17645566	17647422	-	asmbl_49129	none	STRG.8448.2	1	STRG.8448.1	1
scaffold_3	alt_donor	17834057	17834058	+	asmbl_40661	none	STRG.3994.2	1	STRG.3994.1,blat.proc3829873.chain_397,blat.proc3829873.chain_398,blat.proc3829873.chain_400	4
scaffold_9	alt_acceptor	4198692	4198693	+	asmbl_53920	none	STRG.11011.2	1	STRG.11011.1,blat.proc3829875.chain_3476,blat.proc3829875.chain_3477	3
scaffold_26	alternate_exon	1322047	1324625	-	asmbl_34677	none	STRG.27898.4,blat.proc3829901.chain_1143	2	STRG.27898.5	1
scaffold_13	starts_in_intron	16327270	16327270	-	asmbl_10263,asmbl_10264	none	STRG.16676.1,STRG.16676.3,blat.proc3829895.chain_1348,blat.proc3829895.chain_1349	4	STRG.16676.2	1
scaffold_7	spliced_intron	4934589	4935841	+	asmbl_50653,asmbl_50656,asmbl_50660,asmbl_50661,asmbl_50662	none	STRG.8834.1,STRG.8834.2,STRG.8834.3,blat.proc3829875.chain_1275,blat.proc3829875.chain_1276,blat.proc3829875.chain_1282	6	STRG.8834.4,blat.proc3829875.chain_1277,blat.proc3829875.chain_1278,blat.proc3829875.chain_1279,blat.proc3829875.chain_1281,blat.proc3829875.chain_1283	6
scaffold_17	alternate_exon	1305119	1305195	+	asmbl_17729	none	STRG.19955.2	1	STRG.19955.1,blat.proc3829881.chain_800	2
scaffold_4	alternate_exon	18324452	18324520	-	asmbl_42111	none	STRG.5434.2	1	STRG.5434.1,blat.proc3829889.chain_1451	2
scaffold_18	retained_exon	7686709	7686791	+	asmbl_20807,asmbl_20809	none	STRG.21464.3,blat.proc3829881.chain_2440	2	STRG.21464.1,Trinity_GG_11863_c0_g1_i8,blat.proc3829881.chain_2437,blat.proc3829881.chain_2439	4
scaffold_19	alt_acceptor	1483255	1483256	+	asmbl_22039	none	STRG.21897.2	1	STRG.21897.1,blat.proc3829881.chain_2865	2
scaffold_8	skipped_exon	18249797	18250058	-	asmbl_53533,asmbl_53535,asmbl_53537,asmbl_53540	none	STRG.10723.3,STRG.10723.4,blat.proc3829891.chain_2921,blat.proc3829891.chain_2923	4	STRG.10723.1,blat.proc3829891.chain_2924,blat.proc3829891.chain_2925	3
scaffold_4	spliced_intron	19274656	19274833	-	asmbl_42170,asmbl_42172	none	STRG.5507.1,blat.proc3829889.chain_1528	2	blat.proc3829889.chain_1529	1
scaffold_18	spliced_intron	8912486	8913581	-	asmbl_20081	none	STRG.21550.2	1	STRG.21550.4,STRG.21550.6,blat.proc3829897.chain_2395	3
scaffold_26	spliced_intron	5044652	5044757	+	asmbl_35463,asmbl_35464,asmbl_35466,asmbl_35468,asmbl_35470,asmbl_35476,asmbl_35480,asmbl_35481	none	STRG.28206.1,blat.proc3829885.chain_1156,blat.proc3829885.chain_1157,blat.proc3829885.chain_1159,blat.proc3829885.chain_1163,blat.proc3829885.chain_1167,blat.proc3829885.chain_1168,blat.proc3829885.chain_1169	8	blat.proc3829885.chain_1158,blat.proc3829885.chain_1164	2
scaffold_13	alt_acceptor	3820309	3820310	-	asmbl_9551	none	STRG.15696.3,blat.proc3829895.chain_451	2	STRG.15696.2	1
scaffold_1	retained_intron	11678500	11678600	+	asmbl_2112	none	blat.proc3829871.chain_832	1	STRG.776.1	1
scaffold_23	alternate_exon	5301941	5302079	+	asmbl_30854,asmbl_30855,asmbl_30857	none	STRG.25887.2,STRG.25887.3,Trinity_GG_14289_c0_g1_i2,Trinity_GG_14289_c0_g1_i4,Trinity_GG_14289_c0_g1_i5,blat.proc3829883.chain_2768,blat.proc3829883.chain_2770,blat.proc3829883.chain_2772	8	STRG.25887.1,Trinity_GG_14289_c0_g1_i1,Trinity_GG_14289_c0_g1_i3,blat.proc3829883.chain_2769,blat.proc3829883.chain_2771	5
scaffold_27	starts_in_intron	9136612	9136612	+	asmbl_36468	none	Trinity_GG_16176_c0_g1_i3,blat.proc3829885.chain_2307	2	STRG.29144.1,Trinity_GG_16176_c0_g1_i1,Trinity_GG_16176_c0_g1_i4,blat.proc3829885.chain_2304,blat.proc3829885.chain_2305,blat.proc3829885.chain_2306	6
scaffold_1	ends_in_intron	13890343	13890343	+	asmbl_2306,asmbl_2307	none	blat.proc3829871.chain_1083,blat.proc3829871.chain_1085	2	STRG.994.1,STRG.994.2,blat.proc3829871.chain_1082,blat.proc3829871.chain_1084,blat.proc3829871.chain_1086,blat.proc3829871.chain_1087	6
scaffold_12	ends_in_intron	7222529	7222529	+	asmbl_8692	none	blat.proc3829877.chain_3244	1	STRG.14781.1,blat.proc3829877.chain_3245	2
scaffold_4	alternate_exon	16131718	16133428	-	asmbl_41893	none	STRG.5182.3	1	STRG.5182.4,blat.proc3829889.chain_1223	2
scaffold_1	spliced_intron	1216033	1216212	-	asmbl_47,asmbl_49,asmbl_50,asmbl_51	none	STRG.64.1,STRG.64.2,STRG.64.3,Trinity_GG_17052_c0_g1_i1,blat.proc3829885.chain_3726,blat.proc3829885.chain_3727	6	Trinity_GG_17052_c0_g1_i3,blat.proc3829885.chain_3728	2
scaffold_2	spliced_intron	18610276	18610519	-	asmbl_23819	none	STRG.2736.2	1	STRG.2736.1,Trinity_GG_18522_c0_g1_i1,blat.proc3829887.chain_2560	3
scaffold_13	spliced_intron	3371276	3371709	+	asmbl_10669	none	STRG.15639.1,blat.proc3829879.chain_306	2	Trinity_GG_8579_c0_g1_i2,blat.proc3829879.chain_305	2
scaffold_13	alt_acceptor	5025	5026	+	asmbl_10415	none	STRG.15408.2,Trinity_GG_8474_c0_g1_i4,blat.proc3829879.chain_74	3	Trinity_GG_8474_c0_g1_i5,blat.proc3829879.chain_77	2
scaffold_17	ends_in_intron	1128343	1128343	+	asmbl_17720	none	blat.proc3829881.chain_781	1	STRG.19947.2,blat.proc3829881.chain_783	2
scaffold_25	alt_donor	1296815	1296816	+	asmbl_33361	none	blat.proc3829901.chain_462	1	STRG.27156.1	1
scaffold_2	retained_intron	690646	690687	+	asmbl_24115,asmbl_24116,asmbl_24118	none	STRG.1553.2,STRG.1553.4,blat.proc3829871.chain_1529	3	STRG.1553.3	1
scaffold_6	starts_in_intron	15537027	15537027	-	asmbl_49014	none	blat.proc3829891.chain_608	1	STRG.8301.1,blat.proc3829891.chain_609	2
scaffold_17	starts_in_intron	4267663	4267663	+	asmbl_17907	none	Trinity_GG_11076_c0_g1_i1,blat.proc3829881.chain_1022	2	STRG.20166.1,blat.proc3829881.chain_1023	2
scaffold_19	spliced_intron	13220754	13221798	-	asmbl_21826,asmbl_21827,asmbl_21842,asmbl_21845	none	STRG.22682.1,STRG.22682.3,Trinity_GG_29598_c1_g1_i7,blat.proc3829897.chain_3359,blat.proc3829897.chain_3360,blat.proc3829897.chain_3363,blat.proc3829897.chain_3368	7	Trinity_GG_29598_c1_g1_i4,blat.proc3829897.chain_3366,blat.proc3829897.chain_3370	3
scaffold_27	alt_donor	2881216	2881217	+	asmbl_36099,asmbl_36102,asmbl_36104	none	STRG.28753.1,blat.proc3829885.chain_1817,blat.proc3829885.chain_1818,blat.proc3829885.chain_1820	4	STRG.28753.2,STRG.28753.3,STRG.28753.4,blat.proc3829885.chain_1819,blat.proc3829885.chain_1821,blat.proc3829885.chain_1823	6
scaffold_25	alt_donor	9119329	9119330	+	asmbl_33775	none	STRG.27709.2	1	STRG.27709.3	1
scaffold_12	retained_intron	4617396	4617716	-	asmbl_7558	none	Trinity_GG_25175_c1_g1_i1,blat.proc3829893.chain_3032	2	STRG.14627.1,STRG.14627.2,Trinity_GG_25175_c0_g1_i1,blat.proc3829893.chain_3029,blat.proc3829893.chain_3030,blat.proc3829893.chain_3031	6
scaffold_9	alt_donor	16567713	16567714	+	asmbl_54573,asmbl_54578,asmbl_54580	none	STRG.11798.2,Trinity_GG_6586_c0_g1_i14,Trinity_GG_6586_c0_g1_i23,blat.proc3829877.chain_552,blat.proc3829877.chain_558	5	STRG.11798.1,Trinity_GG_6586_c0_g1_i10,Trinity_GG_6586_c0_g1_i15,Trinity_GG_6586_c0_g1_i21,Trinity_GG_6586_c0_g1_i5,blat.proc3829877.chain_554,blat.proc3829877.chain_555,blat.proc3829877.chain_556,blat.proc3829877.chain_557	9
scaffold_2	starts_in_intron	16276177	16276177	+	asmbl_25135,asmbl_25136	none	blat.proc3829871.chain_2782,blat.proc3829871.chain_2786	2	STRG.2564.1,STRG.2564.3,blat.proc3829871.chain_2777,blat.proc3829871.chain_2780,blat.proc3829871.chain_2781,blat.proc3829871.chain_2783,blat.proc3829871.chain_2784,blat.proc3829871.chain_2785	8
scaffold_16	alt_donor	4721045	4721046	+	asmbl_16993	none	STRG.19242.1,blat.proc3829881.chain_64	2	STRG.19242.2,blat.proc3829881.chain_63	2
scaffold_14	spliced_intron	7506677	7507029	-	asmbl_13202,asmbl_13203,asmbl_13204,asmbl_13206	none	STRG.17180.1,STRG.17180.2,STRG.17180.4,blat.proc3829895.chain_1867,blat.proc3829895.chain_1868,blat.proc3829895.chain_1869,blat.proc3829895.chain_1870	7	STRG.17180.3,blat.proc3829895.chain_1866	2
scaffold_2	alt_acceptor	14537060	14537061	+	asmbl_24974	none	STRG.2452.1,blat.proc3829871.chain_2648	2	STRG.2452.2,STRG.2452.3,blat.proc3829871.chain_2647	3
scaffold_15	ends_in_intron	15185177	15185177	+	asmbl_14678	none	STRG.18906.4	1	STRG.18906.1,STRG.18906.3,blat.proc3829879.chain_3474,blat.proc3829879.chain_3475,blat.proc3829879.chain_3476,blat.proc3829879.chain_3477,blat.proc3829879.chain_3478,blat.proc3829879.chain_3479,blat.proc3829879.chain_3481,blat.proc3829879.chain_3482,blat.proc3829879.chain_3485,blat.proc3829879.chain_3486,blat.proc3829879.chain_3487	13
scaffold_26	spliced_intron	6663635	6663720	+	asmbl_35627,asmbl_35629	none	STRG.28362.1,STRG.28362.2,blat.proc3829885.chain_1353	3	STRG.28362.3,Trinity_GG_15670_c0_g1_i1,blat.proc3829885.chain_1355	3
scaffold_1	retained_intron	169539	169855	+	asmbl_1399,asmbl_1400	none	Trinity_GG_21_c0_g2_i1,Trinity_GG_21_c0_g2_i2,blat.proc3829871.chain_35,blat.proc3829871.chain_36	4	STRG.14.1,Trinity_GG_21_c0_g1_i1,blat.proc3829871.chain_33	3
scaffold_15	starts_in_intron	2073598	2073598	-	asmbl_14996	none	Trinity_GG_27104_c0_g1_i1,blat.proc3829895.chain_2680	2	STRG.17986.1,STRG.17986.2,STRG.17986.3,blat.proc3829895.chain_2679	4
scaffold_21	alt_acceptor	6558917	6558918	-	asmbl_27757	none	Trinity_GG_30475_c0_g1_i1,blat.proc3829899.chain_1228	2	STRG.24163.1	1
scaffold_2	starts_in_intron	2791531	2791531	-	asmbl_22943	none	blat.proc3829887.chain_1558	1	STRG.1724.1,STRG.1724.2,STRG.1724.3,blat.proc3829887.chain_1559,blat.proc3829887.chain_1561	5
scaffold_6	starts_in_intron	17383369	17383369	+	asmbl_47686	none	Trinity_GG_4638_c0_g1_i4,blat.proc3829875.chain_820	2	STRG.8436.1,STRG.8436.2,Trinity_GG_4638_c0_g1_i3,blat.proc3829875.chain_821	4
scaffold_6	spliced_intron	5198065	5198348	+	asmbl_46860,asmbl_46863,asmbl_46864,asmbl_46865,asmbl_46870	none	STRG.7489.2,STRG.7489.3,STRG.7489.5,Trinity_GG_4091_c0_g1_i10,blat.proc3829873.chain_3581,blat.proc3829873.chain_3583,blat.proc3829873.chain_3585,blat.proc3829873.chain_3587	8	STRG.7489.4,Trinity_GG_4091_c0_g1_i6,blat.proc3829873.chain_3582	3
scaffold_17	alt_donor	7023106	7023107	+	asmbl_18014	none	STRG.20355.2	1	STRG.20355.1	1
scaffold_6	alt_donor	13734531	13734532	+	asmbl_47469,asmbl_47470	none	STRG.8124.2,STRG.8124.3,blat.proc3829875.chain_477	3	STRG.8124.1,blat.proc3829875.chain_476	2
scaffold_8	spliced_intron	16040457	16040586	-	asmbl_53355	none	STRG.10578.1,blat.proc3829891.chain_2728	2	STRG.10578.3	1
scaffold_5	retained_intron	8748542	8748659	+	asmbl_44227,asmbl_44229,asmbl_44230	none	Trinity_GG_3381_c0_g1_i3,blat.proc3829873.chain_2340,blat.proc3829873.chain_2341,blat.proc3829873.chain_2342	4	STRG.6200.1,STRG.6200.2,Trinity_GG_3381_c0_g1_i5,blat.proc3829873.chain_2338,blat.proc3829873.chain_2339	5
scaffold_550	retained_intron	1774	1827	+	asmbl_46517,asmbl_46518	none	STRG.30343.1,STRG.30343.2	2	blat.proc3829885.chain_3382,blat.proc3829885.chain_3383	2
scaffold_15	spliced_intron	8290704	8290838	-	asmbl_15356	none	STRG.18381.1,blat.proc3829895.chain_3141	2	blat.proc3829895.chain_3140	1
scaffold_17	retained_intron	4267993	4268192	+	asmbl_17907	none	Trinity_GG_11076_c0_g1_i1,blat.proc3829881.chain_1022	2	STRG.20166.1,blat.proc3829881.chain_1023	2
scaffold_24	spliced_intron	6223797	6223880	-	asmbl_32933,asmbl_32937,asmbl_32939,asmbl_32940	none	STRG.26664.1,blat.proc3829899.chain_3686,blat.proc3829899.chain_3690,blat.proc3829899.chain_3693,blat.proc3829899.chain_3694	5	Trinity_GG_31899_c0_g1_i10,blat.proc3829899.chain_3689,blat.proc3829899.chain_3696	3
scaffold_5	spliced_intron	15765826	15766010	+	asmbl_44677,asmbl_44680,asmbl_44681,asmbl_44682,asmbl_44684,asmbl_44685	none	STRG.6763.1,blat.proc3829873.chain_2874,blat.proc3829873.chain_2875,blat.proc3829873.chain_2876,blat.proc3829873.chain_2877,blat.proc3829873.chain_2880,blat.proc3829873.chain_2882	7	Trinity_GG_3692_c0_g1_i6,blat.proc3829873.chain_2879	2
scaffold_3	alternate_exon	3237315	3249029	+	asmbl_39899	none	STRG.3087.1,blat.proc3829871.chain_3299,blat.proc3829871.chain_3310	3	STRG.3087.6,Trinity_GG_1771_c2_g1_i1,blat.proc3829871.chain_3313	3
scaffold_6	starts_in_intron	7150189	7150189	+	asmbl_46982	none	blat.proc3829873.chain_3722	1	STRG.7611.1,blat.proc3829873.chain_3721	2
scaffold_15	alternate_exon	12391554	12394406	-	asmbl_15592	none	STRG.18686.2	1	STRG.18686.1,blat.proc3829895.chain_3453	2
scaffold_23	skipped_exon	8102387	8103421	+	asmbl_31055	none	STRG.26106.2	1	STRG.26106.1	1
scaffold_5	starts_in_intron	776647	776647	-	asmbl_45178	none	blat.proc3829889.chain_1733	1	STRG.5622.1,Trinity_GG_20187_c1_g1_i2,blat.proc3829889.chain_1732	3
scaffold_9	starts_in_intron	7786179	7786179	+	asmbl_54121	none	blat.proc3829875.chain_3716	1	blat.proc3829875.chain_3706,blat.proc3829875.chain_3709,blat.proc3829875.chain_3713,blat.proc3829875.chain_3714	4
scaffold_26	alt_acceptor	5404287	5404288	+	asmbl_35512	none	blat.proc3829885.chain_1236	1	STRG.28230.1	1
scaffold_2	retained_intron	8857714	8857736	+	asmbl_24682	none	STRG.2137.1	1	STRG.2137.2	1
scaffold_17	spliced_intron	477860	478200	-	asmbl_18665	none	STRG.19878.1,blat.proc3829897.chain_827	2	blat.proc3829897.chain_826	1
scaffold_13	alternate_exon	7452777	7452804	+	asmbl_11041	none	STRG.16026.1	1	STRG.16026.2	1
scaffold_28	skipped_exon	2810466	2811511	-	asmbl_37408,asmbl_37411,asmbl_37414	none	STRG.29459.1,blat.proc3829901.chain_2491,blat.proc3829901.chain_2494,blat.proc3829901.chain_2497	4	blat.proc3829901.chain_2493	1
scaffold_21	retained_intron	6118192	6118268	+	asmbl_28634	none	Trinity_GG_13367_c0_g1_i2,blat.proc3829883.chain_1269	2	STRG.24134.1,blat.proc3829883.chain_1268	2
scaffold_14	retained_intron	11685485	11685674	-	asmbl_13510	none	blat.proc3829895.chain_2223	1	STRG.17500.1,STRG.17500.2,blat.proc3829895.chain_2221,blat.proc3829895.chain_2222,blat.proc3829895.chain_2224	5
scaffold_5	retained_intron	18808969	18809061	+	asmbl_44942	none	STRG.7000.2	1	STRG.7000.1,blat.proc3829873.chain_3114	2
scaffold_23	retained_intron	7388982	7389133	+	asmbl_30986	none	STRG.26035.1,blat.proc3829883.chain_2923	2	STRG.26035.2	1
scaffold_3	starts_in_intron	10825184	10825184	-	asmbl_39068	none	Trinity_GG_18916_c0_g1_i2,blat.proc3829887.chain_3280	2	STRG.3514.1	1
scaffold_13	starts_in_intron	8355742	8355742	+	asmbl_11112	none	Trinity_GG_8876_c0_g1_i5,blat.proc3829879.chain_889	2	STRG.16112.1,STRG.16112.2,STRG.16112.3,blat.proc3829879.chain_890,blat.proc3829879.chain_891,blat.proc3829879.chain_892	6
scaffold_12	retained_intron	4984361	4984577	+	asmbl_8592	none	blat.proc3829877.chain_3083	1	STRG.14656.1,STRG.14656.2,blat.proc3829877.chain_3080,blat.proc3829877.chain_3082,blat.proc3829877.chain_3086	5
scaffold_1	starts_in_intron	11165224	11165224	-	asmbl_622	none	blat.proc3829887.chain_592	1	STRG.738.1,blat.proc3829887.chain_593	2
scaffold_11	alternate_exon	6663432	6663537	-	asmbl_6711	none	STRG.13702.3	1	STRG.13702.1,STRG.13702.2,Trinity_GG_24688_c0_g1_i1,blat.proc3829893.chain_2158,blat.proc3829893.chain_2159	5
scaffold_2	ends_in_intron	15267762	15267762	+	asmbl_25023	none	blat.proc3829871.chain_2539	1	STRG.2480.1,STRG.2480.2,Trinity_GG_1353_c0_g1_i14,blat.proc3829871.chain_2514,blat.proc3829871.chain_2515,blat.proc3829871.chain_2516,blat.proc3829871.chain_2518,blat.proc3829871.chain_2519,blat.proc3829871.chain_2520,blat.proc3829871.chain_2521,blat.proc3829871.chain_2523	11
scaffold_4	spliced_intron	17032148	17032361	+	asmbl_43359,asmbl_43360	none	STRG.5305.2,STRG.5305.3,blat.proc3829873.chain_1570	3	blat.proc3829873.chain_1569	1
scaffold_14	alt_acceptor	11246769	11246770	-	asmbl_13444,asmbl_13447	none	STRG.17444.1,STRG.17444.4,blat.proc3829895.chain_2126	3	STRG.17444.3,blat.proc3829895.chain_2125	2
scaffold_14	alternate_exon	1377306	1377451	-	asmbl_12857	none	blat.proc3829895.chain_1490	1	STRG.16775.1,STRG.16775.2,STRG.16775.3,blat.proc3829895.chain_1487,blat.proc3829895.chain_1488,blat.proc3829895.chain_1489	6
scaffold_22	ends_in_intron	7415749	7415749	-	asmbl_30161	none	blat.proc3829899.chain_2148	1	STRG.25062.1,STRG.25062.2	2
scaffold_9	alternate_exon	13606668	13607397	+	asmbl_54485	none	STRG.11636.3,Trinity_GG_6516_c1_g1_i1,blat.proc3829877.chain_427,blat.proc3829877.chain_429	4	STRG.11636.1,blat.proc3829877.chain_428	2
scaffold_1	retained_exon	6299554	6299654	-	asmbl_354	none	STRG.424.2,blat.proc3829887.chain_306	2	STRG.424.4	1
scaffold_17	spliced_intron	7116861	7117011	-	asmbl_19082,asmbl_19085	none	STRG.20367.1,Trinity_GG_28472_c0_g1_i1,Trinity_GG_28472_c0_g1_i3,blat.proc3829897.chain_1338,blat.proc3829897.chain_1340	5	STRG.20367.2,Trinity_GG_28472_c0_g1_i2,Trinity_GG_28472_c0_g1_i4,blat.proc3829897.chain_1337,blat.proc3829897.chain_1339	5
scaffold_16	spliced_intron	6135129	6135279	+	asmbl_17066,asmbl_17067	none	STRG.19335.1,STRG.19335.2,blat.proc3829881.chain_197,blat.proc3829881.chain_198	4	blat.proc3829881.chain_199	1
scaffold_6	alt_acceptor	18621645	18621646	+	asmbl_47771	none	STRG.8519.2,Trinity_GG_4677_c0_g1_i2,blat.proc3829875.chain_912	3	STRG.8519.1,Trinity_GG_4677_c0_g1_i1,blat.proc3829875.chain_911	3
scaffold_8	alt_acceptor	6115125	6115126	+	asmbl_51922	none	STRG.10007.2,Trinity_GG_5582_c0_g1_i5,blat.proc3829875.chain_2522	3	STRG.10007.1,Trinity_GG_5582_c0_g1_i2,Trinity_GG_5582_c0_g1_i7,blat.proc3829875.chain_2523,blat.proc3829875.chain_2527	5
scaffold_21	spliced_intron	5594441	5594553	-	asmbl_27706	none	STRG.24077.1,blat.proc3829899.chain_1140	2	Trinity_GG_30435_c0_g1_i1,blat.proc3829899.chain_1141	2
scaffold_10	retained_exon	926313	926810	-	asmbl_2927,asmbl_2929	none	STRG.11959.1,Trinity_GG_23671_c0_g1_i3,blat.proc3829893.chain_420	3	STRG.11959.2	1
scaffold_9	retained_intron	8396407	8396490	+	asmbl_54159	none	Trinity_GG_6284_c0_g1_i2,blat.proc3829877.chain_16	2	STRG.11249.1,STRG.11249.2,STRG.11249.3,STRG.11249.4,STRG.11249.5,blat.proc3829877.chain_17,blat.proc3829877.chain_18,blat.proc3829877.chain_19,blat.proc3829877.chain_21	9
scaffold_5	skipped_exon	9811526	9811845	+	asmbl_44312	none	STRG.6289.1,blat.proc3829873.chain_2411	2	STRG.6289.2,STRG.6289.3,STRG.6289.4,STRG.6289.5,blat.proc3829873.chain_2412	5
scaffold_27	ends_in_intron	7229321	7229321	+	asmbl_36389	none	STRG.29062.1	1	STRG.29062.2,blat.proc3829885.chain_2185	2
scaffold_26	alternate_exon	6704291	6704414	-	asmbl_34973	none	blat.proc3829901.chain_1523	1	STRG.28358.3	1
scaffold_24	retained_exon	10479717	10479731	+	asmbl_32569,asmbl_32570	none	STRG.26999.1,STRG.26999.2	2	blat.proc3829885.chain_114	1
scaffold_11	retained_intron	9950772	9950860	-	asmbl_6949	none	blat.proc3829893.chain_2419	1	STRG.14010.1,blat.proc3829893.chain_2418	2
scaffold_7	alt_acceptor	8175494	8175495	+	asmbl_50842	none	STRG.9039.3,Trinity_GG_5002_c0_g2_i2,blat.proc3829875.chain_1469	3	STRG.9039.1,STRG.9039.2,blat.proc3829875.chain_1470,blat.proc3829875.chain_1471	4
scaffold_7	alt_donor	9392970	9392971	+	asmbl_50963	none	STRG.9131.1,Trinity_GG_5073_c0_g1_i1,blat.proc3829875.chain_1601	3	STRG.9131.2,Trinity_GG_5073_c0_g1_i2,blat.proc3829875.chain_1600	3
scaffold_18	alternate_exon	814841	814925	+	asmbl_20347	none	blat.proc3829881.chain_1869	1	blat.proc3829881.chain_1864	1
scaffold_9	alt_donor	570764	570765	+	asmbl_53754	none	STRG.10779.1	1	STRG.10779.2,STRG.10779.3,blat.proc3829875.chain_3224	3
scaffold_5	alternate_exon	10535059	10535138	-	asmbl_45743	none	STRG.6332.2,blat.proc3829889.chain_2348	2	STRG.6332.3,STRG.6332.4,blat.proc3829889.chain_2349	3
scaffold_7	alternate_exon	11874202	11874284	-	asmbl_49985,asmbl_49986	none	STRG.9297.1,STRG.9297.2	2	Trinity_GG_22229_c0_g1_i5,blat.proc3829891.chain_1490	2
scaffold_20	spliced_intron	1490221	1490256	+	asmbl_25571,asmbl_25572	none	STRG.22855.2,STRG.22855.3	2	STRG.22855.1,STRG.22855.5	2
scaffold_23	starts_in_intron	8811804	8811804	+	asmbl_31081	none	blat.proc3829883.chain_3039	1	STRG.26127.1,blat.proc3829883.chain_3036,blat.proc3829883.chain_3037	3
scaffold_5	skipped_exon	17976293	17978662	+	asmbl_44859	none	blat.proc3829873.chain_3038	1	STRG.6933.1,blat.proc3829873.chain_3039	2
scaffold_6	alternate_exon	12990505	12998579	-	asmbl_48795,asmbl_48796	none	Trinity_GG_21547_c0_g1_i5,blat.proc3829891.chain_263,blat.proc3829891.chain_266,blat.proc3829891.chain_272	4	STRG.8061.6,STRG.8061.8,Trinity_GG_21547_c0_g1_i18,Trinity_GG_21547_c0_g1_i2,Trinity_GG_21547_c0_g1_i7,blat.proc3829891.chain_265,blat.proc3829891.chain_267,blat.proc3829891.chain_269	8
scaffold_3	alternate_exon	19824480	19824664	-	asmbl_39605	none	STRG.4095.2	1	STRG.4095.3,blat.proc3829889.chain_161	2
scaffold_8	spliced_intron	9937116	9937196	-	asmbl_53074,asmbl_53077	none	STRG.10241.1,STRG.10241.2,blat.proc3829891.chain_2424	3	blat.proc3829891.chain_2423	1
scaffold_5	starts_in_intron	6566767	6566767	+	asmbl_44093	none	STRG.6047.4	1	STRG.6047.1,STRG.6047.2,STRG.6047.3,blat.proc3829873.chain_2179,blat.proc3829873.chain_2181	5
scaffold_17	retained_intron	9592999	9593177	-	asmbl_19229,asmbl_19231	none	STRG.20568.3,blat.proc3829897.chain_1518	2	STRG.20568.2,Trinity_GG_28580_c0_g1_i1,blat.proc3829897.chain_1516,blat.proc3829897.chain_1517	4
scaffold_6	spliced_intron	853752	853844	-	asmbl_48017,asmbl_48018,asmbl_48020	none	STRG.7143.1,STRG.7143.3,STRG.7143.4,blat.proc3829889.chain_3139	4	blat.proc3829889.chain_3140	1
scaffold_16	ends_in_intron	4016845	4016845	-	asmbl_16207	none	blat.proc3829897.chain_145	1	STRG.19207.1,blat.proc3829897.chain_143,blat.proc3829897.chain_144	3
scaffold_26	alt_acceptor	9843384	9843385	+	asmbl_35808,asmbl_35815,asmbl_35817	none	STRG.28526.1,blat.proc3829885.chain_1557,blat.proc3829885.chain_1559	3	STRG.28526.3,STRG.28526.5,blat.proc3829885.chain_1556,blat.proc3829885.chain_1558,blat.proc3829885.chain_1560,blat.proc3829885.chain_1561,blat.proc3829885.chain_1562,blat.proc3829885.chain_1564,blat.proc3829885.chain_1567	9
scaffold_1	spliced_intron	14189912	14190481	-	asmbl_872,asmbl_877,asmbl_879,asmbl_880	none	STRG.1005.1,blat.proc3829887.chain_944,blat.proc3829887.chain_945,blat.proc3829887.chain_948,blat.proc3829887.chain_949	5	blat.proc3829887.chain_947	1
scaffold_18	alternate_exon	7947974	7948122	-	asmbl_20028	none	STRG.21484.3,blat.proc3829897.chain_2319	2	STRG.21484.1,STRG.21484.2,STRG.21484.4,blat.proc3829897.chain_2317,blat.proc3829897.chain_2318	5
scaffold_70	alt_acceptor	7891	7892	-	asmbl_51543	none	STRG.30086.1	1	STRG.30086.2,blat.proc3829901.chain_3187,blat.proc3829901.chain_3188	3
scaffold_14	retained_intron	9272764	9273885	-	asmbl_13347,asmbl_13349	none	blat.proc3829895.chain_1994,blat.proc3829895.chain_1998	2	STRG.17323.4	1
scaffold_10	alt_donor	15426848	15426849	+	asmbl_4960	none	STRG.13051.2	1	STRG.13051.1	1
scaffold_6	alt_acceptor	753060	753061	-	asmbl_48008	none	STRG.7128.1,blat.proc3829889.chain_3116	2	STRG.7128.2	1
scaffold_20	skipped_exon	1615934	1618620	-	asmbl_26519	none	STRG.22881.1	1	STRG.22881.2,STRG.22881.3,STRG.22881.4	3
scaffold_8	starts_in_intron	12684100	12684100	-	asmbl_53220	none	Trinity_GG_22806_c0_g1_i2	1	STRG.10433.1,blat.proc3829891.chain_2556	2
scaffold_15	alternate_exon	10658089	10663014	-	asmbl_15457,asmbl_15464	none	STRG.18545.3,STRG.18545.4,blat.proc3829895.chain_3320	3	STRG.18545.1,blat.proc3829895.chain_3321,blat.proc3829895.chain_3322	3
scaffold_2	alternate_exon	6083944	6084270	-	asmbl_23200	none	STRG.1980.2,blat.proc3829887.chain_1842	2	STRG.1980.1,blat.proc3829887.chain_1841	2
scaffold_2	starts_in_intron	3911167	3911167	-	asmbl_23049	none	Trinity_GG_18045_c0_g1_i3,blat.proc3829887.chain_1700	2	STRG.1825.1	1
scaffold_3	alt_donor	13833535	13833536	+	asmbl_40421	none	blat.proc3829873.chain_126	1	STRG.3723.1,blat.proc3829873.chain_125	2
scaffold_12	retained_intron	101136	101235	-	asmbl_7410	none	blat.proc3829893.chain_2822	1	STRG.14409.1,blat.proc3829893.chain_2821	2
scaffold_20	alt_donor	967175	967176	+	asmbl_25552	none	Trinity_GG_12589_c0_g1_i3	1	STRG.22792.1	1
scaffold_24	skipped_exon	9080067	9082772	+	asmbl_32494,asmbl_32495,asmbl_32497	none	STRG.26929.1,STRG.26929.3,Trinity_GG_14897_c0_g1_i8,Trinity_GG_14897_c0_g1_i9,blat.proc3829885.chain_71,blat.proc3829885.chain_73,blat.proc3829885.chain_76	7	STRG.26929.2,Trinity_GG_14897_c0_g1_i2,blat.proc3829885.chain_72,blat.proc3829885.chain_74	4
scaffold_18	ends_in_intron	7036878	7036878	-	asmbl_19958	none	blat.proc3829897.chain_2266	1	STRG.21403.1,blat.proc3829897.chain_2265	2
scaffold_10	ends_in_intron	1621309	1621309	+	asmbl_4236	none	Trinity_GG_6672_c2_g1_i1,blat.proc3829877.chain_700	2	STRG.12018.1,STRG.12018.2,STRG.12018.3,STRG.12018.4,Trinity_GG_6672_c1_g1_i1,Trinity_GG_6672_c1_g1_i2,Trinity_GG_6672_c1_g1_i3,blat.proc3829877.chain_697,blat.proc3829877.chain_698,blat.proc3829877.chain_699	10
scaffold_11	retained_intron	3767796	3767816	-	asmbl_6553,asmbl_6554	none	Trinity_GG_24570_c0_g1_i1,Trinity_GG_24570_c0_g1_i4	2	STRG.13488.2	1
scaffold_17	retained_intron	8543163	8543246	+	asmbl_18124	none	blat.proc3829881.chain_1289	1	STRG.20458.1,STRG.20458.2,STRG.20458.3,blat.proc3829881.chain_1287,blat.proc3829881.chain_1288	5
scaffold_13	spliced_intron	2570469	2570603	+	asmbl_10609,asmbl_10610,asmbl_10612,asmbl_10614	none	STRG.15550.1,Trinity_GG_8519_c0_g1_i1,Trinity_GG_8519_c0_g1_i3,blat.proc3829879.chain_189,blat.proc3829879.chain_191,blat.proc3829879.chain_192,blat.proc3829879.chain_195	7	Trinity_GG_8519_c0_g1_i8,blat.proc3829879.chain_188,blat.proc3829879.chain_190,blat.proc3829879.chain_193,blat.proc3829879.chain_194	5
scaffold_12	retained_intron	4784262	4784513	-	asmbl_7579	none	STRG.14646.3,Trinity_GG_25172_c0_g1_i11,blat.proc3829893.chain_3024	3	STRG.14646.1,STRG.14646.2,STRG.14646.4,STRG.14646.5,blat.proc3829893.chain_3017,blat.proc3829893.chain_3018,blat.proc3829893.chain_3019,blat.proc3829893.chain_3021,blat.proc3829893.chain_3022,blat.proc3829893.chain_3023,blat.proc3829893.chain_3025	11
scaffold_5	alternate_exon	4719072	4719217	+	asmbl_43958	none	STRG.5920.2	1	STRG.5920.1,blat.proc3829873.chain_2092	2
scaffold_17	retained_intron	9533968	9534048	+	asmbl_18232,asmbl_18236	none	Trinity_GG_11250_c0_g1_i4,blat.proc3829881.chain_1349,blat.proc3829881.chain_1350	3	STRG.20566.1,STRG.20566.2,STRG.20566.3,STRG.20566.4,Trinity_GG_11250_c0_g1_i7,blat.proc3829881.chain_1352,blat.proc3829881.chain_1353,blat.proc3829881.chain_1356	8
scaffold_28	alt_acceptor	5851963	5851964	+	asmbl_38305	none	STRG.29697.1	1	STRG.29697.2,Trinity_GG_16460_c0_g1_i1,blat.proc3829885.chain_2806	3
scaffold_20	starts_in_intron	11174076	11174076	-	asmbl_27071	none	blat.proc3829899.chain_619	1	STRG.23618.1,blat.proc3829899.chain_620	2
scaffold_9	retained_intron	61373	61963	-	asmbl_54767	none	STRG.10754.1,STRG.10754.2,Trinity_GG_23008_c0_g1_i1,blat.proc3829891.chain_2963	4	STRG.10754.4,Trinity_GG_23008_c0_g2_i2,blat.proc3829891.chain_2965	3
scaffold_16	alt_donor	12649698	12649699	+	asmbl_17446	none	STRG.19746.1	1	STRG.19746.2,blat.proc3829881.chain_626	2
scaffold_16	starts_in_intron	4041513	4041513	-	asmbl_16215	none	blat.proc3829897.chain_237	1	STRG.19210.1,STRG.19210.2,blat.proc3829897.chain_235,blat.proc3829897.chain_236	4
scaffold_28	spliced_intron	4194207	4194283	-	asmbl_37522	none	STRG.29591.1,blat.proc3829901.chain_2720	2	blat.proc3829901.chain_2719	1
scaffold_4	skipped_exon	7154144	7154943	+	asmbl_42805,asmbl_42806	none	STRG.4558.5,blat.proc3829873.chain_883	2	STRG.4558.1,STRG.4558.2,STRG.4558.3,STRG.4558.4,blat.proc3829873.chain_884	5
scaffold_3	retained_intron	14774473	14774932	-	asmbl_39369	none	STRG.3820.2,blat.proc3829887.chain_3623	2	STRG.3820.1,blat.proc3829887.chain_3625	2
scaffold_1	alt_donor	12327542	12327543	+	asmbl_2180	none	STRG.840.1,blat.proc3829871.chain_839	2	STRG.840.3	1
scaffold_4	spliced_intron	19017909	19017987	-	asmbl_42146	none	STRG.5483.2	1	STRG.5483.4	1
scaffold_2	alt_acceptor	15267953	15267954	+	asmbl_25024	none	blat.proc3829871.chain_2516	1	STRG.2480.1,STRG.2480.2,STRG.2480.3,Trinity_GG_1353_c0_g1_i14,blat.proc3829871.chain_2514,blat.proc3829871.chain_2515,blat.proc3829871.chain_2517,blat.proc3829871.chain_2518,blat.proc3829871.chain_2519,blat.proc3829871.chain_2520,blat.proc3829871.chain_2521,blat.proc3829871.chain_2522,blat.proc3829871.chain_2523	13
scaffold_1	retained_intron	3270497	3270864	-	asmbl_140,asmbl_142	none	STRG.199.4,blat.proc3829887.chain_98	2	STRG.199.2,STRG.199.3	2
scaffold_22	retained_intron	504668	504905	-	asmbl_29864,asmbl_29866	none	blat.proc3829899.chain_1826,blat.proc3829899.chain_1834	2	STRG.24685.1,STRG.24685.2,blat.proc3829899.chain_1821,blat.proc3829899.chain_1823,blat.proc3829899.chain_1824,blat.proc3829899.chain_1829,blat.proc3829899.chain_1831	7
scaffold_22	alt_donor	6151861	6151862	-	asmbl_30079,asmbl_30080	none	STRG.24952.1,STRG.24952.3,blat.proc3829899.chain_2023	3	STRG.24952.2,blat.proc3829899.chain_2022	2
scaffold_24	retained_intron	3655857	3656074	+	asmbl_32162	none	STRG.26528.5,Trinity_GG_14654_c0_g1_i1,blat.proc3829883.chain_3409	3	STRG.26528.6,Trinity_GG_14654_c0_g1_i7,blat.proc3829883.chain_3407	3
scaffold_2	spliced_intron	15266383	15266469	+	asmbl_25020,asmbl_25021,asmbl_25022,asmbl_25024,asmbl_25025,asmbl_25027,asmbl_25028,asmbl_25029,asmbl_25031	none	STRG.2480.1,STRG.2480.2,STRG.2480.3,Trinity_GG_1353_c0_g1_i14,blat.proc3829871.chain_2514,blat.proc3829871.chain_2515,blat.proc3829871.chain_2516,blat.proc3829871.chain_2517,blat.proc3829871.chain_2519,blat.proc3829871.chain_2520,blat.proc3829871.chain_2521,blat.proc3829871.chain_2522	12	blat.proc3829871.chain_2518,blat.proc3829871.chain_2523	2
scaffold_3	alt_donor	10628351	10628352	+	asmbl_40238	none	STRG.3509.2,blat.proc3829871.chain_3605	2	STRG.3509.1,STRG.3509.3,blat.proc3829871.chain_3607,blat.proc3829871.chain_3608	4
scaffold_27	alternate_exon	9099303	9099697	+	asmbl_36460	none	blat.proc3829885.chain_2320	1	blat.proc3829885.chain_2318,blat.proc3829885.chain_2319	2
scaffold_7	retained_exon	1236297	1236502	+	asmbl_50472	none	Trinity_GG_4740_c0_g1_i20,Trinity_GG_4740_c1_g1_i2,blat.proc3829875.chain_1050	3	STRG.8627.8	1
scaffold_7	alt_acceptor	6642014	6642015	-	asmbl_49740	none	STRG.8926.2	1	STRG.8926.1,blat.proc3829891.chain_1242	2
scaffold_1	spliced_intron	9298014	9298117	+	asmbl_1966,asmbl_1967	none	STRG.626.1,STRG.626.2,Trinity_GG_370_c0_g1_i1,blat.proc3829871.chain_645	4	Trinity_GG_370_c0_g1_i2,blat.proc3829871.chain_642	2
scaffold_10	ends_in_intron	4542847	4542847	-	asmbl_3213	none	Trinity_GG_23857_c0_g1_i1	1	STRG.12275.2,blat.proc3829893.chain_729	2
scaffold_14	alt_donor	1592566	1592567	-	asmbl_12872	none	STRG.16786.2,blat.proc3829895.chain_1444	2	STRG.16786.1,STRG.16786.3,STRG.16786.4,STRG.16786.5,blat.proc3829895.chain_1442,blat.proc3829895.chain_1443	6
scaffold_2	ends_in_intron	3901272	3901272	+	asmbl_24343	none	Trinity_GG_1005_c0_g2_i1	1	STRG.1831.1,STRG.1831.2,STRG.1831.3,blat.proc3829871.chain_1839,blat.proc3829871.chain_1840,blat.proc3829871.chain_1842,blat.proc3829871.chain_1843	7
scaffold_14	spliced_intron	15345450	15346296	-	asmbl_13696	none	STRG.17749.1,blat.proc3829895.chain_2513	2	STRG.17749.2,blat.proc3829895.chain_2512	2
scaffold_18	alternate_exon	3917226	3917456	-	asmbl_19820	none	STRG.21192.1	1	STRG.21192.2,STRG.21192.3,STRG.21192.4,STRG.21192.5,blat.proc3829897.chain_2089	5
scaffold_22	spliced_intron	4377962	4378747	+	asmbl_29292	none	STRG.24842.1,Trinity_GG_13732_c0_g1_i2,blat.proc3829883.chain_1876	3	STRG.24842.2,Trinity_GG_13732_c0_g1_i1,blat.proc3829883.chain_1875	3
scaffold_24	retained_intron	2514768	2515025	+	asmbl_32111	none	STRG.26452.3,blat.proc3829883.chain_3353	2	STRG.26452.4,blat.proc3829883.chain_3354	2
scaffold_17	retained_intron	8731691	8732397	+	asmbl_18147	none	STRG.20476.1,Trinity_GG_11221_c0_g1_i3,blat.proc3829881.chain_1277	3	STRG.20476.2,blat.proc3829881.chain_1276	2
scaffold_16	starts_in_intron	4658366	4658366	+	asmbl_16990	none	STRG.19239.3,blat.proc3829881.chain_73	2	STRG.19239.1,STRG.19239.2,blat.proc3829881.chain_70,blat.proc3829881.chain_71,blat.proc3829881.chain_72	5
scaffold_27	alternate_exon	633175	633520	+	asmbl_35925	none	STRG.28564.1,Trinity_GG_15812_c1_g1_i1,blat.proc3829885.chain_1609	3	STRG.28564.2	1
scaffold_14	retained_intron	7216560	7216831	+	asmbl_12113	none	Trinity_GG_9432_c0_g1_i2,blat.proc3829879.chain_1871	2	STRG.17138.1,Trinity_GG_9432_c0_g1_i1,blat.proc3829879.chain_1870,blat.proc3829879.chain_1872	4
scaffold_6	spliced_intron	8171724	8171933	-	asmbl_48475,asmbl_48476,asmbl_48479,asmbl_48481	none	STRG.7691.1,STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3715,blat.proc3829889.chain_3716	5	blat.proc3829889.chain_3724,blat.proc3829889.chain_3725	2
scaffold_7	ends_in_intron	2590840	2590840	+	asmbl_50536	none	blat.proc3829875.chain_1113	1	STRG.8685.2	1
scaffold_17	retained_intron	8871672	8871801	-	asmbl_19177	none	STRG.20494.3,blat.proc3829897.chain_1445	2	STRG.20494.1,STRG.20494.2,blat.proc3829897.chain_1446	3
scaffold_9	alt_donor	14819591	14819592	-	asmbl_55458,asmbl_55461	none	STRG.11693.1,Trinity_GG_23432_c0_g1_i1,blat.proc3829893.chain_10,blat.proc3829893.chain_4	4	STRG.11693.2,STRG.11693.7,blat.proc3829893.chain_8	3
scaffold_23	retained_intron	2585757	2588165	-	asmbl_31460	none	STRG.25705.1,Trinity_GG_31351_c1_g1_i4,blat.proc3829899.chain_2747,blat.proc3829899.chain_2751	4	STRG.25705.2,blat.proc3829899.chain_2749	2
scaffold_23	ends_in_intron	7514026	7514026	-	asmbl_31754	none	blat.proc3829899.chain_3153	1	STRG.26043.1,STRG.26043.2,STRG.26043.3,blat.proc3829899.chain_3151,blat.proc3829899.chain_3152	5
scaffold_24	retained_exon	9119237	9119809	+	asmbl_32510	none	Trinity_GG_14906_c0_g1_i3,blat.proc3829885.chain_100,blat.proc3829885.chain_99	3	STRG.26927.1,blat.proc3829885.chain_101,blat.proc3829885.chain_102,blat.proc3829885.chain_104,blat.proc3829885.chain_97,blat.proc3829885.chain_98	6
scaffold_12	spliced_intron	12288575	12288996	-	asmbl_7985,asmbl_7989	none	STRG.15114.3,STRG.15114.4	2	STRG.15114.1,STRG.15114.2,STRG.15114.6	3
scaffold_19	alternate_exon	10222252	10222450	+	asmbl_22432	none	STRG.22389.4,blat.proc3829881.chain_3315	2	STRG.22389.1,blat.proc3829881.chain_3317	2
scaffold_4	alternate_exon	12680226	12682132	-	asmbl_41689	none	STRG.4906.1,blat.proc3829889.chain_972	2	STRG.4906.2,blat.proc3829889.chain_970	2
scaffold_11	alt_acceptor	7886945	7886946	+	asmbl_5655,asmbl_5656	none	STRG.13780.1,STRG.13780.2,Trinity_GG_7587_c0_g1_i1,Trinity_GG_7587_c0_g1_i3,blat.proc3829877.chain_2253,blat.proc3829877.chain_2254	6	STRG.13780.3,Trinity_GG_7587_c0_g1_i4,blat.proc3829877.chain_2255	3
scaffold_14	alt_acceptor	6699564	6699565	+	asmbl_12079	none	STRG.17102.1,blat.proc3829879.chain_1868	2	STRG.17102.2	1
scaffold_1	alt_acceptor	9897775	9897776	-	asmbl_569	none	STRG.661.2,blat.proc3829887.chain_557	2	STRG.661.1,blat.proc3829887.chain_559	2
scaffold_25	starts_in_intron	3637028	3637028	+	asmbl_33432	none	Trinity_GG_15058_c0_g1_i9,blat.proc3829885.chain_345	2	STRG.27294.1,STRG.27294.2,STRG.27294.3,blat.proc3829885.chain_341,blat.proc3829885.chain_342,blat.proc3829885.chain_344	6
scaffold_25	alt_donor	4538956	4538957	+	asmbl_33507	none	STRG.27374.1,blat.proc3829885.chain_414	2	blat.proc3829885.chain_415	1
scaffold_15	alternate_exon	6961608	6961631	+	asmbl_14214,asmbl_14215	none	blat.proc3829879.chain_2930,blat.proc3829879.chain_2933	2	STRG.18295.2	1
scaffold_19	alt_acceptor	1498487	1498488	+	asmbl_22044	none	STRG.21905.1,blat.proc3829881.chain_2929	2	STRG.21905.2,STRG.21905.4,blat.proc3829881.chain_2927	3
scaffold_25	retained_intron	4810463	4810690	+	asmbl_33532	none	blat.proc3829885.chain_374	1	STRG.27400.2,Trinity_GG_15078_c0_g1_i1,Trinity_GG_15078_c0_g1_i5,blat.proc3829885.chain_376,blat.proc3829885.chain_377	5
scaffold_14	spliced_intron	15346342	15346877	-	asmbl_13696,asmbl_13697	none	STRG.17749.1,STRG.17749.3,blat.proc3829895.chain_2513,blat.proc3829895.chain_2514	4	STRG.17749.2,blat.proc3829895.chain_2512	2
scaffold_24	alt_acceptor	3656073	3656074	+	asmbl_32163	none	STRG.26528.6,Trinity_GG_14654_c0_g1_i7,blat.proc3829883.chain_3407	3	STRG.26528.1,STRG.26528.2,STRG.26528.3,STRG.26528.4,Trinity_GG_14654_c0_g1_i10,Trinity_GG_14654_c0_g1_i3,blat.proc3829883.chain_3402,blat.proc3829883.chain_3403,blat.proc3829883.chain_3404,blat.proc3829883.chain_3405,blat.proc3829883.chain_3406,blat.proc3829883.chain_3408	12
scaffold_6	alt_acceptor	6942795	6942796	+	asmbl_46962,asmbl_46963	none	STRG.7596.1,blat.proc3829873.chain_3706,blat.proc3829873.chain_3708	3	STRG.7596.2	1
scaffold_11	spliced_intron	8478872	8479288	+	asmbl_5746,asmbl_5748	none	STRG.13851.1,Trinity_GG_7647_c0_g1_i4,Trinity_GG_7647_c0_g1_i5,blat.proc3829877.chain_2359,blat.proc3829877.chain_2362	5	STRG.13851.3,blat.proc3829877.chain_2361	2
scaffold_5	retained_exon	4689531	4689818	-	asmbl_45379,asmbl_45380	none	blat.proc3829889.chain_2027,blat.proc3829889.chain_2030	2	STRG.5919.1,STRG.5919.4,STRG.5919.6,blat.proc3829889.chain_2026,blat.proc3829889.chain_2028,blat.proc3829889.chain_2029,blat.proc3829889.chain_2032,blat.proc3829889.chain_2033,blat.proc3829889.chain_2035	9
scaffold_18	alt_donor	6609205	6609206	-	asmbl_19943	none	STRG.21364.1	1	STRG.21364.2	1
scaffold_21	spliced_intron	5537513	5537636	-	asmbl_27700,asmbl_27701,asmbl_27705	none	STRG.24073.1,blat.proc3829899.chain_1165,blat.proc3829899.chain_1167	3	STRG.24073.2,STRG.24073.3,Trinity_GG_30443_c0_g1_i6,blat.proc3829899.chain_1163,blat.proc3829899.chain_1166,blat.proc3829899.chain_1168	6
scaffold_22	retained_intron	10286469	10286546	-	asmbl_30367	none	Trinity_GG_31184_c0_g1_i2,blat.proc3829899.chain_2426	2	STRG.25359.1	1
scaffold_18	alt_acceptor	7875869	7875870	+	asmbl_20835,asmbl_20838,asmbl_20840	none	STRG.21481.1,STRG.21481.4,blat.proc3829881.chain_2403,blat.proc3829881.chain_2404	4	STRG.21481.2,STRG.21481.3,blat.proc3829881.chain_2401,blat.proc3829881.chain_2402	4
scaffold_12	alt_donor	9930704	9930705	+	asmbl_8860	none	STRG.14950.1,blat.proc3829877.chain_3390	2	STRG.14950.2,blat.proc3829877.chain_3389	2
scaffold_18	alt_acceptor	9167910	9167911	+	asmbl_20903,asmbl_20904	none	STRG.21549.1,STRG.21549.3,Trinity_GG_11916_c0_g1_i2,blat.proc3829881.chain_2540	4	STRG.21549.2	1
scaffold_11	alt_donor	6714823	6714824	-	asmbl_6712,asmbl_6715	none	STRG.13703.1,STRG.13703.2,blat.proc3829893.chain_2182	3	STRG.13703.4,STRG.13703.5,STRG.13703.6,Trinity_GG_24701_c0_g1_i5,blat.proc3829893.chain_2180,blat.proc3829893.chain_2181	6
scaffold_4	alternate_exon	13723243	13723421	-	asmbl_41747	none	blat.proc3829889.chain_1046	1	STRG.4993.2,blat.proc3829889.chain_1047	2
scaffold_10	alt_acceptor	6323733	6323734	-	asmbl_3365,asmbl_3367	none	STRG.12453.2,STRG.12453.3,blat.proc3829893.chain_879	3	STRG.12453.1,blat.proc3829893.chain_880	2
scaffold_3	ends_in_intron	12942450	12942450	-	asmbl_39193	none	STRG.3670.3,Trinity_GG_19027_c0_g1_i1,blat.proc3829887.chain_3443	3	STRG.3670.1,STRG.3670.2,Trinity_GG_19027_c0_g1_i2,blat.proc3829887.chain_3444	4
scaffold_18	starts_in_intron	8866158	8866158	-	asmbl_20060	none	STRG.21541.1,Trinity_GG_29045_c1_g1_i1,blat.proc3829897.chain_2364	3	STRG.21541.2,STRG.21541.3,blat.proc3829897.chain_2356,blat.proc3829897.chain_2357,blat.proc3829897.chain_2358,blat.proc3829897.chain_2359,blat.proc3829897.chain_2360,blat.proc3829897.chain_2362	8
scaffold_15	alt_donor	14633943	14633944	-	asmbl_15751	none	STRG.18867.2,blat.proc3829895.chain_3644	2	STRG.18867.1,STRG.18867.4,blat.proc3829895.chain_3645	3
scaffold_26	spliced_intron	5953595	5953639	-	asmbl_34928	none	STRG.28289.2	1	STRG.28289.1,blat.proc3829901.chain_1471,blat.proc3829901.chain_1473	3
scaffold_6	spliced_intron	5084001	5084167	-	asmbl_48339	none	STRG.7481.1,blat.proc3829889.chain_3541	2	blat.proc3829889.chain_3542	1
scaffold_28	alt_donor	761499	761500	-	asmbl_37256,asmbl_37257	none	STRG.29273.1,STRG.29273.3	2	STRG.29273.4	1
scaffold_5	alt_acceptor	12811852	12811853	-	asmbl_45866	none	STRG.6499.2	1	STRG.6499.1	1
scaffold_12	skipped_exon	14041156	14041584	+	asmbl_9012	none	STRG.15215.2	1	STRG.15215.1,Trinity_GG_8373_c0_g1_i2,blat.proc3829877.chain_3650	3
scaffold_23	ends_in_intron	2209324	2209324	-	asmbl_31435	none	blat.proc3829899.chain_2693	1	STRG.25677.4	1
scaffold_14	alt_donor	9276860	9276861	-	asmbl_13346,asmbl_13348	none	STRG.17323.2,blat.proc3829895.chain_1995	2	STRG.17323.1,blat.proc3829895.chain_1994,blat.proc3829895.chain_1996,blat.proc3829895.chain_1998	4
scaffold_14	alt_acceptor	2122933	2122934	-	asmbl_12898	none	Trinity_GG_26440_c0_g1_i9,blat.proc3829895.chain_1527	2	STRG.16822.1,Trinity_GG_26440_c0_g1_i4,Trinity_GG_26440_c0_g1_i5,Trinity_GG_26440_c0_g1_i7,blat.proc3829895.chain_1526,blat.proc3829895.chain_1528,blat.proc3829895.chain_1529	7
scaffold_23	alternate_exon	4311635	4311889	-	asmbl_31580	none	blat.proc3829899.chain_2952	1	blat.proc3829899.chain_2951	1
scaffold_19	retained_exon	12337504	12337857	+	asmbl_22593	none	STRG.22552.1,blat.proc3829881.chain_3502	2	blat.proc3829881.chain_3500	1
scaffold_17	retained_intron	3998088	3998274	+	asmbl_17880,asmbl_17881,asmbl_17883,asmbl_17884,asmbl_17886,asmbl_17887	none	STRG.20145.1,STRG.20145.3,STRG.20145.4,blat.proc3829881.chain_988,blat.proc3829881.chain_989,blat.proc3829881.chain_990,blat.proc3829881.chain_991	7	STRG.20145.2,blat.proc3829881.chain_992	2
scaffold_947	alt_acceptor	3717	3718	+	asmbl_55811	none	STRG.30489.1	1	STRG.30489.2,blat.proc3829885.chain_3456	2
scaffold_24	alternate_exon	6726585	6727650	-	asmbl_32961	none	blat.proc3829901.chain_20	1	STRG.26704.2,blat.proc3829901.chain_21	2
scaffold_23	alt_donor	6988870	6988871	-	asmbl_31719	none	blat.proc3829899.chain_3074	1	STRG.26001.1,STRG.26001.2,blat.proc3829899.chain_3072,blat.proc3829899.chain_3073	4
scaffold_27	retained_exon	3020770	3020793	+	asmbl_36133,asmbl_36134	none	blat.proc3829885.chain_1780,blat.proc3829885.chain_1782	2	STRG.28769.1,STRG.28769.2,blat.proc3829885.chain_1779	3
scaffold_8	starts_in_intron	8590537	8590537	-	asmbl_52955	none	blat.proc3829891.chain_2282	1	STRG.10105.1,blat.proc3829891.chain_2283	2
scaffold_8	spliced_intron	4784352	4784444	-	asmbl_52788	none	STRG.9933.1,blat.proc3829891.chain_2111	2	blat.proc3829891.chain_2110	1
scaffold_19	retained_intron	13236971	13237060	-	asmbl_21832	none	STRG.22682.5,blat.proc3829897.chain_3354	2	STRG.22682.1,STRG.22682.3,STRG.22682.4,blat.proc3829897.chain_3355,blat.proc3829897.chain_3356,blat.proc3829897.chain_3357	6
scaffold_1	ends_in_intron	8648231	8648231	-	asmbl_475,asmbl_479,asmbl_484	none	STRG.572.4,STRG.572.5,Trinity_GG_17313_c2_g1_i1,blat.proc3829887.chain_459	4	STRG.572.2	1
scaffold_13	spliced_intron	11379478	11379627	-	asmbl_10041	none	Trinity_GG_26140_c0_g1_i7,blat.proc3829895.chain_1030	2	STRG.16287.8,Trinity_GG_26140_c0_g1_i11,blat.proc3829895.chain_1032	3
scaffold_16	starts_in_intron	3570525	3570525	-	asmbl_16160	none	Trinity_GG_27773_c0_g1_i5,blat.proc3829897.chain_193	2	STRG.19160.1,STRG.19160.2,STRG.19160.3,Trinity_GG_27773_c0_g1_i6,Trinity_GG_27773_c0_g1_i8,blat.proc3829897.chain_190,blat.proc3829897.chain_192	7
scaffold_9	alt_acceptor	8182545	8182546	+	asmbl_54146,asmbl_54147	none	STRG.11240.1,blat.proc3829877.chain_10,blat.proc3829877.chain_11	3	Trinity_GG_6281_c0_g1_i4,blat.proc3829877.chain_12,blat.proc3829877.chain_9	3
scaffold_810	starts_in_intron	535	535	-	asmbl_53663	none	blat.proc3829901.chain_3494	1	blat.proc3829901.chain_3493	1
scaffold_24	alt_donor	10267198	10267199	-	asmbl_33160	none	STRG.26960.1,blat.proc3829901.chain_238	2	STRG.26960.2	1
scaffold_19	spliced_intron	12423727	12423837	+	asmbl_22605	none	Trinity_GG_12480_c0_g2_i1,blat.proc3829881.chain_3522	2	Trinity_GG_12480_c0_g2_i2,blat.proc3829881.chain_3521	2
scaffold_23	spliced_intron	7701820	7701972	+	asmbl_31021	none	STRG.26068.2	1	STRG.26068.1	1
scaffold_5	spliced_intron	68119	68377	+	asmbl_43734	none	blat.proc3829873.chain_1778	1	Trinity_GG_3057_c0_g1_i3,Trinity_GG_3057_c0_g1_i4,Trinity_GG_3057_c0_g1_i5,blat.proc3829873.chain_1776,blat.proc3829873.chain_1777	5
scaffold_1	alternate_exon	11068397	11068896	+	asmbl_2043,asmbl_2045	none	STRG.723.1,STRG.723.2,Trinity_GG_431_c0_g1_i3,blat.proc3829871.chain_745	4	STRG.723.3,Trinity_GG_431_c0_g1_i1,blat.proc3829871.chain_744	3
scaffold_18	spliced_intron	1903420	1904370	-	asmbl_19692,asmbl_19703,asmbl_19704	none	STRG.21072.9,blat.proc3829897.chain_1890,blat.proc3829897.chain_1898	3	STRG.21072.3,Trinity_GG_28789_c0_g2_i1,Trinity_GG_28789_c3_g1_i1,blat.proc3829897.chain_1904,blat.proc3829897.chain_1907	5
scaffold_22	spliced_intron	6131276	6131391	+	asmbl_29389,asmbl_29391,asmbl_29397,asmbl_29398	none	STRG.24955.3,STRG.24955.7,blat.proc3829883.chain_2007,blat.proc3829883.chain_2009	4	blat.proc3829883.chain_2010	1
scaffold_12	spliced_intron	10187619	10188436	-	asmbl_7860	none	STRG.14979.2,blat.proc3829893.chain_3405	2	STRG.14979.3,blat.proc3829893.chain_3402	2
scaffold_12	spliced_intron	4204687	4204911	+	asmbl_8545	none	STRG.14587.2,Trinity_GG_8068_c0_g1_i1,blat.proc3829877.chain_3110	3	STRG.14587.1,Trinity_GG_8068_c0_g1_i2,blat.proc3829877.chain_3111	3
scaffold_9	ends_in_intron	5757365	5757365	-	asmbl_54989,asmbl_54991	none	STRG.11135.3,STRG.11135.4	2	STRG.11135.1	1
scaffold_14	starts_in_intron	10495184	10495184	+	asmbl_12307	none	Trinity_GG_9564_c1_g1_i1,blat.proc3829879.chain_2102	2	STRG.17385.1,blat.proc3829879.chain_2100,blat.proc3829879.chain_2101	3
scaffold_10	retained_intron	6467752	6468715	-	asmbl_3382,asmbl_3385	none	blat.proc3829893.chain_942,blat.proc3829893.chain_945	2	blat.proc3829893.chain_940,blat.proc3829893.chain_941,blat.proc3829893.chain_943,blat.proc3829893.chain_944	4
scaffold_11	retained_intron	3140143	3140263	-	asmbl_6509	none	Trinity_GG_24520_c1_g1_i2,blat.proc3829893.chain_1875	2	Trinity_GG_24520_c1_g1_i1,blat.proc3829893.chain_1874	2
scaffold_24	ends_in_intron	8739939	8739939	-	asmbl_33084	none	STRG.26873.3,Trinity_GG_32041_c0_g1_i2,blat.proc3829901.chain_168	3	STRG.26873.2,blat.proc3829901.chain_169	2
scaffold_5	alt_donor	16793394	16793395	-	asmbl_46155	none	STRG.6861.2,blat.proc3829889.chain_2904	2	STRG.6861.3	1
scaffold_2	alt_acceptor	6518006	6518007	+	asmbl_24503	none	STRG.2022.2	1	STRG.2022.1,STRG.2022.3,STRG.2022.4,STRG.2022.5,Trinity_GG_1139_c0_g1_i2,blat.proc3829871.chain_2079	6
scaffold_7	retained_intron	4544285	4544372	+	asmbl_50627	none	blat.proc3829875.chain_1242	1	STRG.8819.1,blat.proc3829875.chain_1241,blat.proc3829875.chain_1243,blat.proc3829875.chain_1244	4
scaffold_8	starts_in_intron	4325800	4325800	+	asmbl_51821	none	blat.proc3829875.chain_2418	1	STRG.9905.1,blat.proc3829875.chain_2419	2
scaffold_10	retained_intron	5857610	5858338	-	asmbl_3312	none	Trinity_GG_23943_c0_g1_i1,blat.proc3829893.chain_870,blat.proc3829893.chain_871	3	blat.proc3829893.chain_873	1
scaffold_10	alt_acceptor	17095491	17095492	-	asmbl_3935	none	blat.proc3829893.chain_1578	1	STRG.13145.1,blat.proc3829893.chain_1577,blat.proc3829893.chain_1579	3
scaffold_3	alt_acceptor	14422686	14422687	+	asmbl_40484	none	Trinity_GG_2146_c0_g1_i1,blat.proc3829873.chain_228	2	STRG.3785.1,STRG.3785.2,STRG.3785.3,Trinity_GG_2146_c0_g1_i2,Trinity_GG_2146_c0_g1_i3,Trinity_GG_2146_c0_g1_i5,Trinity_GG_2146_c0_g2_i1,blat.proc3829873.chain_229,blat.proc3829873.chain_230,blat.proc3829873.chain_231,blat.proc3829873.chain_232	11
scaffold_17	alt_donor	4284455	4284456	-	asmbl_18890	none	blat.proc3829897.chain_1101	1	STRG.20169.1,blat.proc3829897.chain_1100,blat.proc3829897.chain_1102	3
scaffold_4	spliced_intron	5651119	5651379	-	asmbl_41352,asmbl_41357,asmbl_41363,asmbl_41365,asmbl_41366,asmbl_41369	none	STRG.4469.2,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_608,blat.proc3829889.chain_611,blat.proc3829889.chain_612	6	STRG.4469.1,blat.proc3829889.chain_605,blat.proc3829889.chain_606,blat.proc3829889.chain_609,blat.proc3829889.chain_610,blat.proc3829889.chain_613	6
scaffold_20	starts_in_intron	8432566	8432566	+	asmbl_25935	none	blat.proc3829883.chain_451	1	STRG.23377.1,STRG.23377.2,blat.proc3829883.chain_452,blat.proc3829883.chain_453	4
scaffold_24	alt_acceptor	8554068	8554069	-	asmbl_33074	none	STRG.26849.1,blat.proc3829901.chain_150	2	STRG.26849.2,blat.proc3829901.chain_149	2
scaffold_3	spliced_intron	17845439	17845840	+	asmbl_40665,asmbl_40667	none	STRG.4008.2,STRG.4008.3,blat.proc3829873.chain_342	3	STRG.4008.4,blat.proc3829873.chain_343	2
scaffold_21	retained_intron	6490693	6490848	+	asmbl_28672	none	blat.proc3829883.chain_1312,blat.proc3829883.chain_1314	2	STRG.24157.1,STRG.24157.2,STRG.24157.3,blat.proc3829883.chain_1311,blat.proc3829883.chain_1313	5
scaffold_1	retained_intron	6496620	6496782	-	asmbl_371	none	STRG.443.1,blat.proc3829887.chain_246	2	blat.proc3829887.chain_247	1
scaffold_13	starts_in_intron	14561813	14561813	-	asmbl_10173	none	blat.proc3829895.chain_1170	1	STRG.16497.3,STRG.16497.4	2
scaffold_1	spliced_intron	11568439	11568517	-	asmbl_641,asmbl_642,asmbl_644,asmbl_645,asmbl_647	none	STRG.766.1,STRG.766.2,blat.proc3829887.chain_577,blat.proc3829887.chain_578,blat.proc3829887.chain_579,blat.proc3829887.chain_581	6	blat.proc3829887.chain_580	1
scaffold_3	alternate_exon	18323520	18323670	-	asmbl_39555	none	STRG.4032.1	1	STRG.4032.2	1
scaffold_23	alt_acceptor	4503411	4503412	+	asmbl_30819	none	STRG.25848.1,Trinity_GG_14221_c0_g1_i1,blat.proc3829883.chain_2664	3	STRG.25848.2,Trinity_GG_14221_c0_g1_i2,blat.proc3829883.chain_2665	3
scaffold_25	spliced_intron	6324770	6324860	-	asmbl_34329,asmbl_34332,asmbl_34333,asmbl_34334,asmbl_34335	none	STRG.27499.1,STRG.27499.3,blat.proc3829901.chain_861,blat.proc3829901.chain_862,blat.proc3829901.chain_864,blat.proc3829901.chain_865	6	STRG.27499.2,Trinity_GG_32449_c0_g1_i7,blat.proc3829901.chain_863	3
scaffold_2	starts_in_intron	14275910	14275910	+	asmbl_24929	none	STRG.2425.3	1	STRG.2425.1,STRG.2425.2,blat.proc3829871.chain_2541,blat.proc3829871.chain_2542,blat.proc3829871.chain_2544,blat.proc3829871.chain_2547	6
scaffold_1	alt_acceptor	3257715	3257716	+	asmbl_1575,asmbl_1576,asmbl_1579,asmbl_1580	none	STRG.201.1,STRG.201.2,STRG.201.3,Trinity_GG_125_c0_g1_i1,Trinity_GG_125_c0_g1_i4,Trinity_GG_125_c0_g1_i6,blat.proc3829871.chain_209,blat.proc3829871.chain_210,blat.proc3829871.chain_213	9	Trinity_GG_125_c0_g1_i2,Trinity_GG_125_c0_g1_i5,blat.proc3829871.chain_211,blat.proc3829871.chain_212	4
scaffold_26	retained_exon	4142408	4142441	+	asmbl_35399	none	STRG.28106.3	1	STRG.28106.2,STRG.28106.4	2
scaffold_11	alt_donor	11937126	11937127	-	asmbl_7021	none	STRG.14160.2	1	STRG.14160.3,STRG.14160.4,STRG.14160.5	3
scaffold_2	ends_in_intron	6906418	6906418	+	asmbl_24542,asmbl_24546	none	STRG.2036.2,blat.proc3829871.chain_2019	2	STRG.2036.1,Trinity_GG_1103_c0_g1_i5,blat.proc3829871.chain_2021	3
scaffold_11	retained_intron	8600562	8601135	+	asmbl_5769	none	Trinity_GG_7654_c0_g1_i7,blat.proc3829877.chain_2375	2	STRG.13863.1,STRG.13863.2,STRG.13863.3,Trinity_GG_7654_c0_g1_i1,Trinity_GG_7654_c0_g1_i2,blat.proc3829877.chain_2376,blat.proc3829877.chain_2378,blat.proc3829877.chain_2379	8
scaffold_1	spliced_intron	12453468	12453687	+	asmbl_2210,asmbl_2212	none	STRG.857.1,blat.proc3829871.chain_949,blat.proc3829871.chain_950	3	STRG.857.2,Trinity_GG_527_c0_g1_i3,blat.proc3829871.chain_948	3
scaffold_18	spliced_intron	7509091	7509220	-	asmbl_19982,asmbl_19983	none	STRG.21437.1,Trinity_GG_28966_c0_g1_i1,Trinity_GG_28966_c0_g1_i3,blat.proc3829897.chain_2208,blat.proc3829897.chain_2209	5	Trinity_GG_28966_c0_g1_i2,blat.proc3829897.chain_2210	2
scaffold_21	spliced_intron	3117600	3118195	-	asmbl_27538	none	STRG.23926.2	1	STRG.23926.1,Trinity_GG_30334_c0_g1_i2,blat.proc3829899.chain_975	3
scaffold_27	retained_exon	3092523	3092591	-	asmbl_36839	none	STRG.28775.4,blat.proc3829901.chain_1946	2	STRG.28775.1,STRG.28775.3,STRG.28775.5,blat.proc3829901.chain_1947,blat.proc3829901.chain_1951	5
scaffold_5	retained_intron	15305751	15305837	+	asmbl_44653	none	STRG.6715.2	1	STRG.6715.1,Trinity_GG_3658_c0_g1_i1,Trinity_GG_3658_c0_g1_i2,blat.proc3829873.chain_2816,blat.proc3829873.chain_2817	5
scaffold_11	skipped_exon	9652425	9653452	-	asmbl_6926	none	STRG.13972.2	1	STRG.13972.1,blat.proc3829893.chain_2392,blat.proc3829893.chain_2393	3
scaffold_13	alternate_exon	4591889	4591932	+	asmbl_10799	none	STRG.15772.2	1	STRG.15772.1	1
scaffold_2	starts_in_intron	7324252	7324252	-	asmbl_23276	none	Trinity_GG_18159_c0_g3_i1,blat.proc3829887.chain_1957	2	Trinity_GG_18159_c0_g2_i1,blat.proc3829887.chain_1956	2
scaffold_5	spliced_intron	13881229	13881333	+	asmbl_44558,asmbl_44559	none	STRG.6605.1,STRG.6605.2,blat.proc3829873.chain_2661,blat.proc3829873.chain_2663	4	blat.proc3829873.chain_2662	1
scaffold_28	spliced_intron	4839616	4841649	+	asmbl_38244	none	STRG.29622.2,Trinity_GG_16390_c0_g1_i4,blat.proc3829885.chain_2671,blat.proc3829885.chain_2673	4	STRG.29622.1,STRG.29622.3,Trinity_GG_16390_c0_g1_i1,Trinity_GG_16390_c0_g1_i2,blat.proc3829885.chain_2672,blat.proc3829885.chain_2674	6
scaffold_25	retained_intron	9337552	9337746	+	asmbl_33797	none	blat.proc3829885.chain_772	1	STRG.27743.1,blat.proc3829885.chain_770,blat.proc3829885.chain_773,blat.proc3829885.chain_774	4
scaffold_17	alt_donor	14877081	14877082	+	asmbl_18550	none	STRG.20945.2	1	STRG.20945.1	1
scaffold_4	starts_in_intron	19600771	19600771	-	asmbl_42214	none	Trinity_GG_20132_c0_g1_i1,blat.proc3829889.chain_1638	2	STRG.5542.2	1
scaffold_11	ends_in_intron	11639863	11639863	+	asmbl_5951	none	blat.proc3829877.chain_2571	1	STRG.14080.1,blat.proc3829877.chain_2568,blat.proc3829877.chain_2570,blat.proc3829877.chain_2572,blat.proc3829877.chain_2573,blat.proc3829877.chain_2574	6
scaffold_11	alt_donor	11637402	11637403	+	asmbl_5951,asmbl_5953	none	blat.proc3829877.chain_2571,blat.proc3829877.chain_2574	2	blat.proc3829877.chain_2573	1
scaffold_7	retained_exon	1231348	1231431	+	asmbl_50474,asmbl_50483,asmbl_50484	none	Trinity_GG_4740_c0_g1_i16,Trinity_GG_4740_c0_g1_i17,Trinity_GG_4740_c0_g1_i21,blat.proc3829875.chain_1042,blat.proc3829875.chain_1046,blat.proc3829875.chain_1047	6	STRG.8627.2,STRG.8627.3,STRG.8627.5,STRG.8627.6,Trinity_GG_4740_c0_g1_i15,blat.proc3829875.chain_1052	6
scaffold_2	spliced_intron	956724	956897	-	asmbl_22851	none	STRG.1572.1,blat.proc3829887.chain_1425	2	STRG.1572.2,Trinity_GG_17872_c0_g1_i2,blat.proc3829887.chain_1426	3
scaffold_22	starts_in_intron	6964813	6964813	-	asmbl_30125	none	Trinity_GG_30971_c0_g1_i2	1	STRG.25000.1	1
scaffold_5	spliced_intron	9812498	9812794	+	asmbl_44312,asmbl_44313,asmbl_44314,asmbl_44315	none	STRG.6289.1,STRG.6289.2,STRG.6289.4,STRG.6289.5,blat.proc3829873.chain_2411,blat.proc3829873.chain_2412	6	STRG.6289.3,Trinity_GG_3421_c0_g1_i3,blat.proc3829873.chain_2413	3
scaffold_14	spliced_intron	4699179	4699324	-	asmbl_13045	none	STRG.16989.2	1	STRG.16989.1,Trinity_GG_26545_c0_g1_i1,blat.proc3829895.chain_1698	3
scaffold_22	spliced_intron	9911206	9911454	-	asmbl_30341	none	Trinity_GG_31135_c0_g1_i2,blat.proc3829899.chain_2342	2	STRG.25311.1,blat.proc3829899.chain_2341	2
scaffold_15	spliced_intron	12422505	12422732	+	asmbl_14501,asmbl_14505,asmbl_14506	none	STRG.18687.1,blat.proc3829879.chain_3270,blat.proc3829879.chain_3271,blat.proc3829879.chain_3272	4	blat.proc3829879.chain_3268,blat.proc3829879.chain_3273	2
scaffold_9	skipped_exon	16563815	16566225	-	asmbl_55547,asmbl_55548,asmbl_55549,asmbl_55550,asmbl_55551	none	STRG.11797.1,STRG.11797.2,STRG.11797.5,Trinity_GG_23481_c0_g3_i5,blat.proc3829893.chain_83,blat.proc3829893.chain_84,blat.proc3829893.chain_85	7	STRG.11797.3,STRG.11797.4,STRG.11797.6,Trinity_GG_23481_c0_g3_i1,Trinity_GG_23481_c0_g3_i6,blat.proc3829893.chain_86,blat.proc3829893.chain_88	7
scaffold_6	alternate_exon	13960260	13960306	+	asmbl_47491	none	STRG.8144.1	1	STRG.8144.2,blat.proc3829875.chain_577,blat.proc3829875.chain_578	3
scaffold_9	ends_in_intron	9672483	9672483	-	asmbl_55193	none	Trinity_GG_23295_c0_g1_i7,blat.proc3829891.chain_3504	2	STRG.11333.1	1
scaffold_4	starts_in_intron	5470476	5470476	+	asmbl_42680	none	Trinity_GG_2455_c0_g1_i2,blat.proc3829873.chain_801	2	STRG.4442.1,Trinity_GG_2455_c0_g1_i1,blat.proc3829873.chain_802	3
scaffold_3	alt_donor	14259583	14259584	+	asmbl_40463	none	STRG.3764.2,blat.proc3829873.chain_104	2	blat.proc3829873.chain_106	1
scaffold_2	alternate_exon	3333141	3333253	-	asmbl_22994	none	STRG.1763.1,blat.proc3829887.chain_1576	2	STRG.1763.2	1
scaffold_16	alt_acceptor	10486642	10486643	+	asmbl_17346	none	STRG.19606.2	1	STRG.19606.1,blat.proc3829881.chain_464	2
scaffold_10	alt_acceptor	762522	762523	-	asmbl_2924	none	STRG.11951.2	1	STRG.11951.1,Trinity_GG_23667_c0_g1_i1,Trinity_GG_23667_c0_g1_i2,blat.proc3829893.chain_409,blat.proc3829893.chain_410	5
scaffold_12	retained_intron	7172399	7173215	+	asmbl_8687	none	blat.proc3829877.chain_3243	1	STRG.14775.1	1
scaffold_19	alternate_exon	9456245	9456753	+	asmbl_22395	none	Trinity_GG_12370_c1_g1_i1,blat.proc3829881.chain_3307	2	STRG.22365.1,STRG.22365.3,blat.proc3829881.chain_3306	3
scaffold_21	spliced_intron	254930	255185	-	asmbl_27314,asmbl_27315,asmbl_27316,asmbl_27318,asmbl_27319,asmbl_27323,asmbl_27324	none	STRG.23718.3,STRG.23718.4,STRG.23718.5,STRG.23718.6,STRG.23718.8,blat.proc3829899.chain_781,blat.proc3829899.chain_782,blat.proc3829899.chain_786,blat.proc3829899.chain_788,blat.proc3829899.chain_792	10	STRG.23718.7,Trinity_GG_30232_c0_g1_i2,blat.proc3829899.chain_784,blat.proc3829899.chain_789,blat.proc3829899.chain_791,blat.proc3829899.chain_794	6
scaffold_4	alt_donor	17637512	17637513	+	asmbl_43411	none	STRG.5364.2,blat.proc3829873.chain_1645	2	STRG.5364.1	1
scaffold_9	retained_intron	8934348	8934433	+	asmbl_54170	none	blat.proc3829877.chain_42	1	STRG.11267.2,blat.proc3829877.chain_43	2
scaffold_18	spliced_intron	2050891	2050959	-	asmbl_19731	none	STRG.21084.3	1	Trinity_GG_28833_c0_g1_i2,blat.proc3829897.chain_1992	2
scaffold_4	spliced_intron	6247748	6247873	+	asmbl_42709	none	STRG.4494.2,blat.proc3829873.chain_841	2	STRG.4494.1,STRG.4494.3,blat.proc3829873.chain_839,blat.proc3829873.chain_840	4
scaffold_4	alternate_exon	3380143	3380419	+	asmbl_42517	none	blat.proc3829873.chain_590	1	STRG.4269.1,STRG.4269.2,blat.proc3829873.chain_586,blat.proc3829873.chain_587	4
scaffold_22	retained_exon	4355993	4356031	+	asmbl_29278,asmbl_29281	none	STRG.24841.2,blat.proc3829883.chain_1877,blat.proc3829883.chain_1882	3	STRG.24841.1,blat.proc3829883.chain_1879	2
scaffold_10	alt_acceptor	17095494	17095495	-	asmbl_3933,asmbl_3934	none	STRG.13145.1,blat.proc3829893.chain_1577,blat.proc3829893.chain_1579	3	blat.proc3829893.chain_1578	1
scaffold_8	ends_in_intron	4341108	4341108	+	asmbl_51824	none	STRG.9912.3	1	STRG.9912.2,blat.proc3829875.chain_2390	2
scaffold_19	skipped_exon	12107338	12107894	-	asmbl_21669	none	STRG.22526.1,blat.proc3829897.chain_3211	2	STRG.22526.3,STRG.22526.4,blat.proc3829897.chain_3209	3
scaffold_17	alternate_exon	2349381	2356400	+	asmbl_17766,asmbl_17767,asmbl_17770	none	STRG.20017.4,STRG.20017.5,STRG.20017.6	3	blat.proc3829881.chain_854	1
scaffold_5	spliced_intron	11990962	11991389	-	asmbl_45811,asmbl_45812,asmbl_45813,asmbl_45816	none	STRG.6447.1,STRG.6447.3,STRG.6447.4,blat.proc3829889.chain_2519,blat.proc3829889.chain_2520,blat.proc3829889.chain_2521	6	blat.proc3829889.chain_2522	1
scaffold_19	retained_intron	13155142	13155525	-	asmbl_21823,asmbl_21824	none	STRG.22626.2,STRG.22626.3,blat.proc3829897.chain_3410	3	blat.proc3829897.chain_3408	1
scaffold_3	ends_in_intron	10944418	10944418	-	asmbl_39081	none	Trinity_GG_18939_c0_g1_i1,blat.proc3829887.chain_3309	2	STRG.3536.1,STRG.3536.2,blat.proc3829887.chain_3310,blat.proc3829887.chain_3311,blat.proc3829887.chain_3312,blat.proc3829887.chain_3313	6
scaffold_9	alternate_exon	6439346	6439561	-	asmbl_55024	none	STRG.11169.1	1	STRG.11169.2	1
scaffold_10	alt_acceptor	9344980	9344981	-	asmbl_3591	none	STRG.12660.3	1	STRG.12660.1,STRG.12660.2,Trinity_GG_24065_c0_g1_i1,blat.proc3829893.chain_1119	4
scaffold_8	alt_acceptor	9378704	9378705	-	asmbl_53023	none	STRG.10194.4	1	STRG.10194.3,STRG.10194.5,STRG.10194.6,blat.proc3829891.chain_2355,blat.proc3829891.chain_2356,blat.proc3829891.chain_2358	6
scaffold_22	retained_intron	11343600	11343820	-	asmbl_30435	none	Trinity_GG_31247_c0_g1_i1,blat.proc3829899.chain_2551	2	STRG.25449.2,blat.proc3829899.chain_2553	2
scaffold_14	alternate_exon	7451946	7452036	-	asmbl_13192	none	STRG.17171.2	1	STRG.17171.1,blat.proc3829895.chain_1735,blat.proc3829895.chain_1736	3
scaffold_4	spliced_intron	5183708	5183825	-	asmbl_41299,asmbl_41300,asmbl_41301	none	STRG.4410.1,STRG.4410.2,STRG.4410.4,blat.proc3829889.chain_521,blat.proc3829889.chain_523	5	STRG.4410.3,Trinity_GG_19483_c0_g1_i1,blat.proc3829889.chain_520	3
scaffold_25	ends_in_intron	801758	801758	-	asmbl_33992	none	Trinity_GG_32200_c0_g1_i3,blat.proc3829901.chain_439	2	STRG.27118.1,STRG.27118.3,STRG.27118.4	3
scaffold_5	starts_in_intron	18560636	18560636	+	asmbl_44921	none	STRG.6978.5	1	STRG.6978.1,STRG.6978.2,STRG.6978.3,blat.proc3829873.chain_3147,blat.proc3829873.chain_3150	5
scaffold_13	ends_in_intron	5948379	5948379	-	asmbl_9721	none	STRG.15896.5	1	STRG.15896.1,STRG.15896.2,STRG.15896.3,STRG.15896.4,blat.proc3829895.chain_637,blat.proc3829895.chain_638	6
scaffold_3	starts_in_intron	13990433	13990433	+	asmbl_40440	none	Trinity_GG_2070_c0_g1_i3,blat.proc3829873.chain_85	2	STRG.3741.1,STRG.3741.2,STRG.3741.3,STRG.3741.4,Trinity_GG_2070_c0_g1_i1,Trinity_GG_2070_c0_g1_i2,Trinity_GG_2070_c0_g1_i4,blat.proc3829873.chain_86,blat.proc3829873.chain_87,blat.proc3829873.chain_88	10
scaffold_7	retained_exon	5235308	5235518	+	asmbl_50682	none	STRG.8853.1,blat.proc3829875.chain_1296	2	blat.proc3829875.chain_1294	1
scaffold_5	alt_donor	9717905	9717906	+	asmbl_44302	none	STRG.6280.2,blat.proc3829873.chain_2444	2	STRG.6280.1,blat.proc3829873.chain_2445	2
scaffold_15	alt_donor	10632715	10632716	+	asmbl_14402,asmbl_14404	none	STRG.18539.2,STRG.18539.3,blat.proc3829879.chain_3113	3	STRG.18539.1,blat.proc3829879.chain_3112	2
scaffold_11	alt_donor	1433379	1433380	-	asmbl_6407	none	STRG.13314.3	1	STRG.13314.1,STRG.13314.2,blat.proc3829893.chain_1783	3
scaffold_5	retained_intron	5039918	5039996	-	asmbl_45413	none	Trinity_GG_20358_c0_g1_i2,blat.proc3829889.chain_2011	2	Trinity_GG_20358_c0_g1_i1,blat.proc3829889.chain_2012	2
scaffold_12	skipped_exon	12307824	12309134	+	asmbl_8950,asmbl_8952	none	STRG.15117.1,STRG.15117.2,blat.proc3829877.chain_3596	3	STRG.15117.4,STRG.15117.6,blat.proc3829877.chain_3594	3
scaffold_13	starts_in_intron	15363233	15363233	+	asmbl_11479	none	Trinity_GG_9120_c1_g1_i1	1	STRG.16566.1,Trinity_GG_9120_c0_g1_i3,Trinity_GG_9120_c0_g1_i4,blat.proc3829879.chain_1298,blat.proc3829879.chain_1299	5
scaffold_3	retained_exon	14513671	14513808	-	asmbl_39333	none	STRG.3790.2	1	STRG.3790.1	1
scaffold_7	spliced_intron	6205363	6205464	+	asmbl_50738	none	STRG.8909.2	1	STRG.8909.1,Trinity_GG_4916_c1_g1_i1,blat.proc3829875.chain_1347	3
scaffold_12	ends_in_intron	7097482	7097482	+	asmbl_8673	none	blat.proc3829877.chain_3233	1	STRG.14762.1,blat.proc3829877.chain_3234	2
scaffold_6	starts_in_intron	18922462	18922462	-	asmbl_49226	none	Trinity_GG_21903_c0_g1_i3	1	STRG.8554.1,STRG.8554.2,blat.proc3829891.chain_893	3
scaffold_1	ends_in_intron	5964257	5964257	+	asmbl_1799	none	blat.proc3829871.chain_457	1	STRG.396.1,STRG.396.2,blat.proc3829871.chain_454	3
scaffold_28	alternate_exon	5230414	5230820	-	asmbl_37584	none	blat.proc3829901.chain_2673	1	Trinity_GG_33578_c0_g1_i6,blat.proc3829901.chain_2675	2
scaffold_3	retained_intron	16346254	16346337	-	asmbl_39446	none	Trinity_GG_19193_c1_g1_i2,blat.proc3829887.chain_3749	2	STRG.3908.2,blat.proc3829889.chain_1	2
scaffold_1	alt_acceptor	10410197	10410198	-	asmbl_590,asmbl_591	none	STRG.674.2,blat.proc3829887.chain_600	2	STRG.674.1,blat.proc3829887.chain_598,blat.proc3829887.chain_601	3
scaffold_5	alternate_exon	6568549	6568635	+	asmbl_44100	none	blat.proc3829873.chain_2180	1	STRG.6047.1,STRG.6047.2,STRG.6047.3,STRG.6047.4,blat.proc3829873.chain_2179,blat.proc3829873.chain_2181	6
scaffold_9	skipped_exon	16558842	16561320	-	asmbl_55545,asmbl_55548	none	STRG.11797.1,STRG.11797.4,Trinity_GG_23481_c0_g3_i5,Trinity_GG_23481_c0_g3_i6,blat.proc3829893.chain_85,blat.proc3829893.chain_88	6	STRG.11797.5	1
scaffold_19	alt_acceptor	12122940	12122941	+	asmbl_22554,asmbl_22555	none	STRG.22527.1,Trinity_GG_12470_c1_g1_i2,blat.proc3829881.chain_3488,blat.proc3829881.chain_3490	4	blat.proc3829881.chain_3489	1
scaffold_2	alt_donor	18405372	18405373	-	asmbl_23797	none	STRG.2724.2	1	STRG.2724.1,blat.proc3829887.chain_2500	2
scaffold_1	retained_exon	3287308	3287337	+	asmbl_1588	none	STRG.204.1	1	STRG.204.2	1
scaffold_12	alt_acceptor	5509947	5509948	+	asmbl_8619,asmbl_8620	none	STRG.14689.2,STRG.14689.3	2	STRG.14689.1,blat.proc3829877.chain_3173,blat.proc3829877.chain_3174	3
scaffold_23	alt_acceptor	10990921	10990922	-	asmbl_31897	none	STRG.26288.1,blat.proc3829899.chain_3317	2	STRG.26288.2	1
scaffold_20	alt_donor	6950010	6950011	-	asmbl_26774,asmbl_26778	none	STRG.23254.2,blat.proc3829899.chain_237	2	STRG.23254.3,STRG.23254.5,STRG.23254.6,STRG.23254.7,blat.proc3829899.chain_235,blat.proc3829899.chain_238,blat.proc3829899.chain_239	7
scaffold_8	retained_intron	16499747	16501670	-	asmbl_53419,asmbl_53420,asmbl_53425,asmbl_53429	none	STRG.10621.3,blat.proc3829891.chain_2859,blat.proc3829891.chain_2867,blat.proc3829891.chain_2871	4	STRG.10621.1,STRG.10621.2,STRG.10621.4,STRG.10621.5,Trinity_GG_22960_c0_g1_i18,Trinity_GG_22960_c0_g1_i19,Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2857,blat.proc3829891.chain_2862,blat.proc3829891.chain_2863,blat.proc3829891.chain_2864,blat.proc3829891.chain_2865,blat.proc3829891.chain_2868,blat.proc3829891.chain_2869,blat.proc3829891.chain_2870,blat.proc3829891.chain_2872	20
scaffold_10	skipped_exon	1292164	1295040	+	asmbl_4205	none	STRG.12009.1,blat.proc3829877.chain_668	2	STRG.12009.2	1
scaffold_17	spliced_intron	11034956	11035084	-	asmbl_19309,asmbl_19312,asmbl_19314	none	STRG.20653.1,STRG.20653.2,STRG.20653.3,STRG.20653.4,blat.proc3829897.chain_1607	5	blat.proc3829897.chain_1608	1
scaffold_23	retained_exon	9330149	9330175	+	asmbl_31086	none	STRG.26149.1	1	STRG.26149.2	1
scaffold_1	ends_in_intron	104143	104143	+	asmbl_1392,asmbl_1394	none	blat.proc3829871.chain_40,blat.proc3829871.chain_44	2	STRG.11.1,Trinity_GG_23_c0_g1_i1,Trinity_GG_23_c0_g1_i2,Trinity_GG_23_c0_g1_i7,blat.proc3829871.chain_41,blat.proc3829871.chain_42,blat.proc3829871.chain_43	7
scaffold_14	spliced_intron	148849	149079	-	asmbl_12762	none	blat.proc3829895.chain_1385	1	STRG.16700.1,STRG.16700.2,Trinity_GG_26353_c0_g1_i3,blat.proc3829895.chain_1382,blat.proc3829895.chain_1383,blat.proc3829895.chain_1384	6
scaffold_5	alt_donor	8082096	8082097	+	asmbl_44187	none	STRG.6160.2	1	STRG.6160.1	1
scaffold_1	alt_acceptor	10410265	10410266	-	asmbl_587,asmbl_588	none	STRG.674.1,blat.proc3829887.chain_598,blat.proc3829887.chain_601	3	STRG.674.2,blat.proc3829887.chain_600	2
scaffold_17	spliced_intron	1304001	1304135	-	asmbl_18737,asmbl_18740,asmbl_18741,asmbl_18743,asmbl_18745	none	STRG.19954.1,STRG.19954.2,blat.proc3829897.chain_927,blat.proc3829897.chain_928,blat.proc3829897.chain_931,blat.proc3829897.chain_932	6	blat.proc3829897.chain_929,blat.proc3829897.chain_930	2
scaffold_27	alternate_exon	6705955	6705988	+	asmbl_36358	none	STRG.29026.1	1	STRG.29026.2,blat.proc3829885.chain_2154	2
scaffold_6	alt_acceptor	10143385	10143386	-	asmbl_48593	none	STRG.7843.2	1	STRG.7843.1,blat.proc3829891.chain_101	2
scaffold_18	starts_in_intron	7861677	7861677	+	asmbl_20819	none	Trinity_GG_11876_c0_g1_i5,blat.proc3829881.chain_2464	2	STRG.21475.1,blat.proc3829881.chain_2466	2
scaffold_11	alternate_exon	1158919	1159157	+	asmbl_5288	none	blat.proc3829877.chain_1803	1	STRG.13299.2,STRG.13299.3	2
scaffold_4	alt_donor	14618985	14618986	+	asmbl_43234	none	STRG.5085.2	1	STRG.5085.1,blat.proc3829873.chain_1430	2
scaffold_23	alt_acceptor	6994684	6994685	-	asmbl_31721	none	STRG.26002.2,blat.proc3829899.chain_3115	2	STRG.26002.1	1
scaffold_24	spliced_intron	3655652	3655776	+	asmbl_32161,asmbl_32162,asmbl_32163,asmbl_32164,asmbl_32165,asmbl_32166	none	STRG.26528.1,STRG.26528.2,STRG.26528.3,STRG.26528.4,STRG.26528.5,STRG.26528.6,Trinity_GG_14654_c0_g1_i1,Trinity_GG_14654_c0_g1_i10,Trinity_GG_14654_c0_g1_i3,Trinity_GG_14654_c0_g1_i7,blat.proc3829883.chain_3402,blat.proc3829883.chain_3403,blat.proc3829883.chain_3406,blat.proc3829883.chain_3407,blat.proc3829883.chain_3408,blat.proc3829883.chain_3409	16	blat.proc3829883.chain_3404	1
scaffold_4	alt_donor	19028625	19028626	-	asmbl_42152	none	STRG.5481.2,blat.proc3829889.chain_1541	2	STRG.5481.1,blat.proc3829889.chain_1540	2
scaffold_17	alt_acceptor	8355206	8355207	+	asmbl_18115	none	STRG.20446.3,Trinity_GG_11203_c0_g1_i3,blat.proc3829881.chain_1235	3	STRG.20446.1,Trinity_GG_11203_c0_g1_i1,blat.proc3829881.chain_1234	3
scaffold_11	spliced_intron	8399407	8399497	+	asmbl_5726,asmbl_5727,asmbl_5728,asmbl_5730	none	STRG.13845.1,STRG.13845.2,Trinity_GG_7638_c0_g1_i6,blat.proc3829877.chain_2341,blat.proc3829877.chain_2342,blat.proc3829877.chain_2344,blat.proc3829877.chain_2345,blat.proc3829877.chain_2346	8	blat.proc3829877.chain_2343	1
scaffold_23	spliced_intron	10331210	10331237	+	asmbl_31142	none	STRG.26228.3	1	Trinity_GG_14478_c0_g1_i1	1
scaffold_24	alt_acceptor	9679672	9679673	+	asmbl_32533	none	blat.proc3829885.chain_89	1	STRG.26936.1	1
scaffold_2	alt_donor	8305576	8305577	+	asmbl_24668	none	STRG.2114.2	1	STRG.2114.1,Trinity_GG_1200_c1_g1_i1,blat.proc3829871.chain_2237	3
scaffold_5	retained_intron	10314896	10314969	+	asmbl_44343	none	STRG.6321.2,Trinity_GG_3448_c0_g1_i3,blat.proc3829873.chain_2467	3	STRG.6321.1,blat.proc3829873.chain_2468	2
scaffold_28	ends_in_intron	7157221	7157221	+	asmbl_38334	none	blat.proc3829885.chain_2853	1	STRG.29751.1,STRG.29751.2,STRG.29751.3,STRG.29751.4,blat.proc3829885.chain_2848,blat.proc3829885.chain_2849,blat.proc3829885.chain_2850,blat.proc3829885.chain_2852	8
scaffold_13	retained_exon	5335012	5335101	+	asmbl_10818,asmbl_10820	none	STRG.15817.1,blat.proc3829879.chain_511,blat.proc3829879.chain_512	3	STRG.15817.2,blat.proc3829879.chain_514	2
scaffold_25	starts_in_intron	6835658	6835658	-	asmbl_34344	none	blat.proc3829901.chain_854	1	STRG.27528.1,blat.proc3829901.chain_853	2
scaffold_27	retained_exon	1774274	1774539	+	asmbl_35996,asmbl_35998	none	STRG.28648.1,Trinity_GG_15863_c0_g1_i1,Trinity_GG_15863_c0_g1_i2	3	STRG.28648.2	1
scaffold_1	starts_in_intron	19041067	19041067	+	asmbl_2564,asmbl_2568	none	STRG.1337.3,blat.proc3829871.chain_1391	2	STRG.1337.2,blat.proc3829871.chain_1392	2
scaffold_12	skipped_exon	9889062	9890217	+	asmbl_8857	none	STRG.14944.1,blat.proc3829877.chain_3444	2	STRG.14944.2,blat.proc3829877.chain_3445	2
scaffold_17	ends_in_intron	1289734	1289734	-	asmbl_18728	none	Trinity_GG_28167_c0_g1_i4,blat.proc3829897.chain_842	2	STRG.19952.1,STRG.19952.3,STRG.19952.4,STRG.19952.5,blat.proc3829897.chain_836,blat.proc3829897.chain_838,blat.proc3829897.chain_840,blat.proc3829897.chain_841,blat.proc3829897.chain_843	9
scaffold_9	alt_donor	2823440	2823441	+	asmbl_53851	none	STRG.10907.2	1	STRG.10907.1,Trinity_GG_6067_c0_g1_i1,blat.proc3829875.chain_3388	3
scaffold_2	alt_donor	17923207	17923208	+	asmbl_25238	none	blat.proc3829871.chain_2874	1	STRG.2677.1,STRG.2677.2,blat.proc3829871.chain_2873	3
scaffold_2	alt_acceptor	14449301	14449302	-	asmbl_23614	none	STRG.2446.1,blat.proc3829887.chain_2219	2	blat.proc3829887.chain_2218	1
scaffold_14	retained_intron	15345450	15346296	-	asmbl_13695	none	STRG.17749.2,blat.proc3829895.chain_2512	2	STRG.17749.1,blat.proc3829895.chain_2513	2
scaffold_25	alt_donor	5568212	5568213	-	asmbl_34242	none	STRG.27439.1,Trinity_GG_32384_c0_g1_i2,blat.proc3829901.chain_738	3	STRG.27439.2,Trinity_GG_32384_c0_g1_i1,blat.proc3829901.chain_739	3
scaffold_19	alt_acceptor	6377094	6377095	-	asmbl_21415	none	STRG.22149.1,blat.proc3829897.chain_2853	2	blat.proc3829897.chain_2854	1
scaffold_3	starts_in_intron	14847094	14847094	+	asmbl_40520	none	Trinity_GG_2121_c1_g1_i4,blat.proc3829873.chain_188	2	STRG.3834.1,STRG.3834.2,blat.proc3829873.chain_187	3
scaffold_7	alternate_exon	12269443	12269733	+	asmbl_51111,asmbl_51114	none	STRG.9313.4,Trinity_GG_5141_c0_g1_i5,Trinity_GG_5141_c0_g1_i6,Trinity_GG_5141_c0_g1_i8,blat.proc3829875.chain_1712,blat.proc3829875.chain_1713	6	STRG.9313.3	1
scaffold_2	spliced_intron	18771819	18771850	+	asmbl_25283	none	STRG.2754.2	1	STRG.2754.1	1
scaffold_11	ends_in_intron	2812241	2812241	-	asmbl_6492	none	Trinity_GG_34271_c0_g1_i2	1	STRG.13393.1	1
scaffold_1	retained_intron	20460149	20460202	+	asmbl_2624	none	STRG.1397.1,Trinity_GG_824_c1_g1_i1	2	STRG.1397.4	1
scaffold_1	ends_in_intron	7283824	7283824	-	asmbl_433	none	STRG.525.3,blat.proc3829887.chain_353	2	STRG.525.2,blat.proc3829887.chain_351	2
scaffold_16	skipped_exon	10105062	10105306	+	asmbl_17319,asmbl_17321	none	STRG.19581.1,blat.proc3829881.chain_479	2	STRG.19581.2,blat.proc3829881.chain_481	2
scaffold_8	starts_in_intron	16040174	16040174	-	asmbl_53354	none	blat.proc3829891.chain_2726	1	STRG.10578.1,STRG.10578.2,STRG.10578.3,blat.proc3829891.chain_2727,blat.proc3829891.chain_2728	5
scaffold_10	alternate_exon	4542920	4543062	-	asmbl_3212	none	STRG.12275.2,blat.proc3829893.chain_729	2	STRG.12275.1,blat.proc3829893.chain_727	2
scaffold_18	alternate_exon	4762387	4769200	+	asmbl_20593	none	STRG.21260.3	1	Trinity_GG_11674_c0_g2_i2,blat.proc3829881.chain_2091	2
scaffold_16	alt_acceptor	10486657	10486658	+	asmbl_17345	none	STRG.19606.1,blat.proc3829881.chain_464	2	STRG.19606.2	1
scaffold_7	alt_acceptor	18784047	18784048	+	asmbl_51424,asmbl_51425	none	STRG.9691.2,STRG.9691.4	2	STRG.9691.1,STRG.9691.3,blat.proc3829875.chain_2056	3
scaffold_16	alternate_exon	13206048	13212708	+	asmbl_17454,asmbl_17455	none	STRG.19770.1,STRG.19770.2,blat.proc3829881.chain_595,blat.proc3829881.chain_596,blat.proc3829881.chain_598	5	STRG.19770.3	1
scaffold_10	retained_intron	8895840	8895918	-	asmbl_3534,asmbl_3542	none	blat.proc3829893.chain_1130,blat.proc3829893.chain_1131	2	STRG.12629.1,blat.proc3829893.chain_1125,blat.proc3829893.chain_1127,blat.proc3829893.chain_1129,blat.proc3829893.chain_1132,blat.proc3829893.chain_1133,blat.proc3829893.chain_1134,blat.proc3829893.chain_1135,blat.proc3829893.chain_1136	9
scaffold_5	spliced_intron	18696880	18697441	-	asmbl_46233	none	blat.proc3829889.chain_2984	1	STRG.6987.1,blat.proc3829889.chain_2983	2
scaffold_5	alternate_exon	16291712	16291740	+	asmbl_44740	none	Trinity_GG_3725_c0_g1_i3	1	STRG.6811.3,blat.proc3829873.chain_2944,blat.proc3829873.chain_2945	3
scaffold_5	alt_acceptor	16205611	16205612	+	asmbl_44717,asmbl_44718,asmbl_44720	none	STRG.6800.1,STRG.6800.2,blat.proc3829873.chain_2888,blat.proc3829873.chain_2890,blat.proc3829873.chain_2891	5	blat.proc3829873.chain_2889	1
scaffold_3	starts_in_intron	3097318	3097318	-	asmbl_38709	none	blat.proc3829887.chain_2825	1	STRG.3062.2,blat.proc3829887.chain_2823	2
scaffold_2	spliced_intron	16357636	16357728	+	asmbl_25151,asmbl_25153	none	STRG.2573.1,Trinity_GG_1455_c0_g1_i3,blat.proc3829871.chain_2758,blat.proc3829871.chain_2761	4	STRG.2573.4,blat.proc3829871.chain_2759	2
scaffold_16	alt_acceptor	7115609	7115610	-	asmbl_16341	none	Trinity_GG_27893_c0_g1_i1,blat.proc3829897.chain_400	2	STRG.19378.2,STRG.19378.3	2
scaffold_19	alt_acceptor	12822372	12822373	-	asmbl_21765	none	blat.proc3829897.chain_3280	1	STRG.22593.1,STRG.22593.2,STRG.22593.3,blat.proc3829897.chain_3275,blat.proc3829897.chain_3278,blat.proc3829897.chain_3279	6
scaffold_21	alternate_exon	10121652	10123098	+	asmbl_28871,asmbl_28873	none	STRG.24462.2,STRG.24462.3,blat.proc3829883.chain_1541	3	STRG.24462.1,blat.proc3829883.chain_1540	2
scaffold_6	starts_in_intron	13948389	13948389	+	asmbl_47489	none	Trinity_GG_4452_c0_g1_i1,blat.proc3829875.chain_537	2	STRG.8140.1,Trinity_GG_4452_c0_g1_i2,blat.proc3829875.chain_535	3
scaffold_21	retained_intron	7367393	7367476	-	asmbl_27825,asmbl_27826	none	blat.proc3829899.chain_1314,blat.proc3829899.chain_1315	2	STRG.24244.1,STRG.24244.2,blat.proc3829899.chain_1316,blat.proc3829899.chain_1317	4
scaffold_18	starts_in_intron	366793	366793	+	asmbl_20325	none	Trinity_GG_11546_c0_g1_i1,blat.proc3829881.chain_1851	2	STRG.20977.1,blat.proc3829881.chain_1850	2
scaffold_11	alt_acceptor	1016883	1016884	-	asmbl_6380	none	STRG.13289.2	1	STRG.13289.1,blat.proc3829893.chain_1724	2
scaffold_23	starts_in_intron	2618169	2618169	-	asmbl_31469,asmbl_31470,asmbl_31476	none	STRG.25709.1,STRG.25709.3,STRG.25709.5	3	STRG.25709.2	1
scaffold_21	alt_donor	5965973	5965974	+	asmbl_28613	none	STRG.24114.1,blat.proc3829883.chain_1260	2	STRG.24114.2	1
scaffold_3	retained_intron	6200887	6200973	-	asmbl_38869,asmbl_38870	none	STRG.3259.2,STRG.3259.3,Trinity_GG_18786_c0_g1_i1,blat.proc3829887.chain_3001	4	STRG.3259.1	1
scaffold_13	alternate_exon	1335356	1335496	+	asmbl_10533	none	STRG.15489.1,blat.proc3829879.chain_230	2	STRG.15489.2,Trinity_GG_8537_c0_g1_i1,blat.proc3829879.chain_229	3
scaffold_8	starts_in_intron	11811978	11811978	+	asmbl_52256	none	Trinity_GG_5803_c0_g1_i4,blat.proc3829875.chain_2924	2	STRG.10378.1,blat.proc3829875.chain_2927,blat.proc3829875.chain_2928	3
scaffold_6	alternate_exon	3387451	3387481	-	asmbl_48202,asmbl_48204	none	STRG.7343.2,blat.proc3829889.chain_3337	2	STRG.7343.1,blat.proc3829889.chain_3338,blat.proc3829889.chain_3339	3
scaffold_13	retained_intron	12105019	12105196	+	asmbl_11314	none	STRG.16334.2	1	STRG.16334.1,Trinity_GG_8989_c0_g1_i1,blat.proc3829879.chain_1102	3
scaffold_8	retained_intron	8970436	8970848	-	asmbl_52978	none	Trinity_GG_22678_c0_g2_i1,blat.proc3829891.chain_2313	2	STRG.10140.1,STRG.10140.2,blat.proc3829891.chain_2309,blat.proc3829891.chain_2311,blat.proc3829891.chain_2312	5
scaffold_13	alt_acceptor	7443184	7443185	+	asmbl_11033,asmbl_11035	none	STRG.16025.2,blat.proc3829879.chain_783,blat.proc3829879.chain_784	3	STRG.16025.1	1
scaffold_7	alt_donor	12386894	12386895	-	asmbl_50015	none	blat.proc3829891.chain_1531	1	STRG.9328.1,blat.proc3829891.chain_1532,blat.proc3829891.chain_1533,blat.proc3829891.chain_1534,blat.proc3829891.chain_1535,blat.proc3829891.chain_1538	6
scaffold_20	starts_in_intron	7210557	7210557	+	asmbl_25863,asmbl_25865	none	STRG.23279.3,Trinity_GG_12855_c0_g1_i3,blat.proc3829883.chain_403	3	STRG.23279.1,STRG.23279.2,Trinity_GG_12855_c0_g1_i1,blat.proc3829883.chain_404,blat.proc3829883.chain_405	5
scaffold_1	retained_intron	13538442	13538687	-	asmbl_828	none	blat.proc3829887.chain_771	1	STRG.966.1,Trinity_GG_17468_c0_g1_i1,Trinity_GG_17468_c0_g1_i5,blat.proc3829887.chain_773,blat.proc3829887.chain_774	5
scaffold_4	alt_donor	14586028	14586029	-	asmbl_41796	none	STRG.5075.2	1	STRG.5075.1	1
scaffold_10	alternate_exon	12997984	12998456	-	asmbl_3748	none	STRG.12900.1,blat.proc3829893.chain_1396	2	STRG.12900.2	1
scaffold_6	starts_in_intron	13355815	13355815	-	asmbl_48848	none	blat.proc3829891.chain_335	1	STRG.8087.1,STRG.8087.2,blat.proc3829891.chain_337,blat.proc3829891.chain_338,blat.proc3829891.chain_340,blat.proc3829891.chain_341	6
scaffold_16	alt_donor	14777239	14777240	-	asmbl_16683	none	STRG.19860.2,Trinity_GG_28125_c0_g1_i1,blat.proc3829897.chain_762	3	STRG.19860.1,Trinity_GG_28125_c0_g1_i2,blat.proc3829897.chain_761	3
scaffold_3	skipped_exon	10274721	10275590	+	asmbl_40205	none	STRG.3461.2,blat.proc3829871.chain_3625	2	STRG.3461.1,STRG.3461.3,STRG.3461.4,blat.proc3829871.chain_3621,blat.proc3829871.chain_3622	5
scaffold_8	alt_donor	13162164	13162165	-	asmbl_53285	none	STRG.10482.2,blat.proc3829891.chain_2617	2	STRG.10482.1,blat.proc3829891.chain_2618	2
scaffold_21	retained_exon	3163840	3164007	+	asmbl_28482,asmbl_28484,asmbl_28491	none	STRG.23945.3,blat.proc3829883.chain_1049,blat.proc3829883.chain_1051,blat.proc3829883.chain_1056	4	STRG.23945.1,STRG.23945.2,STRG.23945.4,STRG.23945.5,blat.proc3829883.chain_1050,blat.proc3829883.chain_1052,blat.proc3829883.chain_1053,blat.proc3829883.chain_1054,blat.proc3829883.chain_1055	9
scaffold_1	spliced_intron	1909884	1910238	+	asmbl_1514,asmbl_1515	none	STRG.115.1,blat.proc3829871.chain_132,blat.proc3829871.chain_134	3	STRG.115.3,Trinity_GG_81_c0_g1_i4,blat.proc3829871.chain_133	3
scaffold_16	alt_acceptor	9573708	9573709	+	asmbl_17296	none	STRG.19547.2,Trinity_GG_10713_c0_g1_i2,blat.proc3829881.chain_433	3	STRG.19547.1,Trinity_GG_10713_c0_g1_i1	2
scaffold_11	starts_in_intron	13248547	13248547	+	asmbl_6013	none	Trinity_GG_7819_c0_g1_i3,blat.proc3829877.chain_2658	2	STRG.14180.1,blat.proc3829877.chain_2656,blat.proc3829877.chain_2657,blat.proc3829877.chain_2659	4
scaffold_15	alternate_exon	14744794	14744915	-	asmbl_15759	none	STRG.18879.1,blat.proc3829895.chain_3657	2	STRG.18879.2,blat.proc3829895.chain_3658	2
scaffold_19	retained_intron	8870718	8870824	-	asmbl_21523	none	blat.proc3829897.chain_3064	1	STRG.22329.1,blat.proc3829897.chain_3063	2
scaffold_16	starts_in_intron	11737024	11737024	-	asmbl_16540	none	Trinity_GG_28016_c0_g1_i2	1	STRG.19681.1,Trinity_GG_28016_c0_g2_i1,blat.proc3829897.chain_604	3
scaffold_4	alt_acceptor	17122452	17122453	-	asmbl_42002,asmbl_42003	none	STRG.5310.1,STRG.5310.2	2	STRG.5310.3,STRG.5310.5	2
scaffold_1	alternate_exon	6829325	6830974	-	asmbl_394	none	STRG.478.2,blat.proc3829887.chain_369	2	blat.proc3829887.chain_366	1
scaffold_4	spliced_intron	8746094	8746165	+	asmbl_42909	none	blat.proc3829873.chain_1034	1	STRG.4689.1	1
scaffold_3	retained_intron	13647877	13648701	-	asmbl_39227	none	STRG.3705.1,Trinity_GG_19021_c0_g1_i2,blat.proc3829887.chain_3437	3	STRG.3705.2,Trinity_GG_19021_c0_g1_i1,blat.proc3829887.chain_3436	3
scaffold_17	skipped_exon	9487827	9488129	+	asmbl_18217,asmbl_18223	none	STRG.20558.1,blat.proc3829881.chain_1326,blat.proc3829881.chain_1331	3	STRG.20558.2,STRG.20558.3,blat.proc3829881.chain_1327,blat.proc3829881.chain_1329,blat.proc3829881.chain_1330	5
scaffold_8	starts_in_intron	14390338	14390338	-	asmbl_53312	none	blat.proc3829891.chain_2659	1	STRG.10517.1,STRG.10517.2,blat.proc3829891.chain_2657,blat.proc3829891.chain_2658	4
scaffold_2	skipped_exon	7214724	7216790	+	asmbl_24572	none	STRG.2054.4,Trinity_GG_1174_c0_g1_i3,blat.proc3829871.chain_2146	3	STRG.2054.1,STRG.2054.2,Trinity_GG_1174_c0_g1_i7,blat.proc3829871.chain_2154	4
scaffold_15	alt_acceptor	16302388	16302389	-	asmbl_15840	none	STRG.18975.1,blat.proc3829895.chain_3739	2	blat.proc3829895.chain_3738	1
scaffold_26	alternate_exon	3943947	3944524	-	asmbl_34791	none	STRG.28066.1	1	STRG.28066.3,blat.proc3829901.chain_1287	2
scaffold_2	alt_acceptor	894301	894302	+	asmbl_24155,asmbl_24161,asmbl_24162,asmbl_24163	none	STRG.1565.1,Trinity_GG_899_c0_g2_i7,blat.proc3829871.chain_1631,blat.proc3829871.chain_1632,blat.proc3829871.chain_1634	5	STRG.1565.2,STRG.1565.3,STRG.1565.4,blat.proc3829871.chain_1635,blat.proc3829871.chain_1636	5
scaffold_3	alt_donor	17833912	17833913	+	asmbl_40658,asmbl_40660	none	STRG.3994.1,blat.proc3829873.chain_398,blat.proc3829873.chain_400	3	STRG.3994.2,blat.proc3829873.chain_397	2
scaffold_23	alt_acceptor	10826232	10826233	-	asmbl_31877	none	STRG.26253.1,blat.proc3829899.chain_3325	2	STRG.26253.2	1
scaffold_21	alt_donor	755588	755589	+	asmbl_28324	none	STRG.23758.1,Trinity_GG_13120_c0_g1_i2,blat.proc3829883.chain_837,blat.proc3829883.chain_838	4	STRG.23758.2	1
scaffold_16	retained_intron	4095539	4095747	+	asmbl_16968	none	Trinity_GG_10532_c0_g1_i2	1	STRG.19214.1,STRG.19214.2,STRG.19214.3,blat.proc3829881.chain_77,blat.proc3829881.chain_82	5
scaffold_8	alt_donor	11612948	11612949	+	asmbl_52239	none	STRG.10351.2	1	STRG.10351.1,blat.proc3829875.chain_2811	2
scaffold_1	ends_in_intron	3584669	3584669	+	asmbl_1607	none	Trinity_GG_155_c0_g1_i1,blat.proc3829871.chain_270	2	STRG.222.1,Trinity_GG_155_c0_g1_i2,blat.proc3829871.chain_269	3
scaffold_11	retained_intron	13246948	13247057	+	asmbl_6015,asmbl_6016	none	blat.proc3829877.chain_2657,blat.proc3829877.chain_2659	2	STRG.14180.1,blat.proc3829877.chain_2655,blat.proc3829877.chain_2656	3
scaffold_17	alt_acceptor	13196891	13196892	-	asmbl_19407,asmbl_19408	none	STRG.20803.1,STRG.20803.4,blat.proc3829897.chain_1733,blat.proc3829897.chain_1737	4	STRG.20803.2,STRG.20803.3,blat.proc3829897.chain_1732,blat.proc3829897.chain_1734	4
scaffold_21	spliced_intron	10497854	10497950	-	asmbl_28072,asmbl_28075	none	STRG.24504.1,blat.proc3829899.chain_1648,blat.proc3829899.chain_1649	3	blat.proc3829899.chain_1647,blat.proc3829899.chain_1650	2
scaffold_20	alternate_exon	787131	787533	+	asmbl_25531	none	STRG.22770.1,blat.proc3829881.chain_3646	2	blat.proc3829881.chain_3647	1
scaffold_22	spliced_intron	3011801	3011845	-	asmbl_29930	none	STRG.24773.2	1	STRG.24773.1,blat.proc3829899.chain_1844	2
scaffold_12	spliced_intron	7275750	7275862	-	asmbl_7692,asmbl_7693,asmbl_7695,asmbl_7697	none	STRG.14787.1,STRG.14787.2,STRG.14787.3,Trinity_GG_25259_c0_g1_i1,Trinity_GG_25259_c0_g1_i3,Trinity_GG_25259_c0_g2_i1,blat.proc3829893.chain_3176,blat.proc3829893.chain_3177,blat.proc3829893.chain_3178	9	Trinity_GG_25259_c0_g1_i2,blat.proc3829893.chain_3175	2
scaffold_11	ends_in_intron	1162738	1162738	+	asmbl_5286,asmbl_5288,asmbl_5289	none	STRG.13299.1,STRG.13299.3,blat.proc3829877.chain_1803,blat.proc3829877.chain_1804	4	STRG.13299.2,blat.proc3829877.chain_1802	2
scaffold_1	spliced_intron	11408932	11409031	+	asmbl_2087	none	STRG.749.1,Trinity_GG_466_c0_g1_i2,blat.proc3829871.chain_810	3	Trinity_GG_466_c0_g1_i1,blat.proc3829871.chain_811	2
scaffold_9	skipped_exon	644164	645342	+	asmbl_53763	none	STRG.10785.2	1	STRG.10785.1,STRG.10785.3,STRG.10785.4,blat.proc3829875.chain_3238	4
scaffold_22	starts_in_intron	4220368	4220368	-	asmbl_29989	none	Trinity_GG_30899_c0_g1_i5	1	STRG.24838.1,STRG.24838.2,STRG.24838.3,STRG.24838.4,blat.proc3829899.chain_1975,blat.proc3829899.chain_1976,blat.proc3829899.chain_1977	7
scaffold_21	starts_in_intron	9939454	9939454	+	asmbl_28863	none	blat.proc3829883.chain_1521	1	STRG.24441.1	1
scaffold_28	retained_intron	1104760	1104779	-	asmbl_37288	none	Trinity_GG_33412_c0_g1_i1	1	STRG.29297.1,blat.proc3829901.chain_2397	2
scaffold_16	retained_intron	10696898	10697449	+	asmbl_17352	none	Trinity_GG_10749_c0_g1_i2,Trinity_GG_10749_c0_g1_i6,blat.proc3829881.chain_492,blat.proc3829881.chain_493	4	STRG.19612.1,blat.proc3829881.chain_491,blat.proc3829897.chain_551	3
scaffold_26	alt_donor	6385934	6385935	+	asmbl_35606	none	STRG.28318.1,blat.proc3829885.chain_1337	2	blat.proc3829885.chain_1336	1
scaffold_18	alt_acceptor	1924050	1924051	+	asmbl_20418,asmbl_20420	none	STRG.21073.2,STRG.21073.3,blat.proc3829881.chain_1933	3	STRG.21073.1	1
scaffold_10	skipped_exon	5258965	5259330	-	asmbl_3269	none	STRG.12347.1,blat.proc3829893.chain_806	2	STRG.12347.2,blat.proc3829893.chain_805	2
scaffold_12	spliced_intron	10584344	10584440	+	asmbl_8905	none	STRG.15014.1	1	Trinity_GG_8268_c0_g1_i1	1
scaffold_7	alt_donor	13213472	13213473	+	asmbl_51203	none	STRG.9420.4	1	STRG.9420.3,blat.proc3829875.chain_1879	2
scaffold_5	starts_in_intron	6912805	6912805	+	asmbl_44122	none	Trinity_GG_3318_c0_g1_i1,blat.proc3829873.chain_2231	2	STRG.6096.2,blat.proc3829873.chain_2232	2
scaffold_3	alt_donor	7709095	7709096	-	asmbl_38928,asmbl_38929,asmbl_38931,asmbl_38932	none	STRG.3361.2,blat.proc3829887.chain_3171,blat.proc3829887.chain_3173,blat.proc3829887.chain_3174	4	STRG.3361.1,blat.proc3829887.chain_3172,blat.proc3829887.chain_3175,blat.proc3829887.chain_3177	4
scaffold_1	alt_donor	14429201	14429202	+	asmbl_2375	none	STRG.1043.2	1	STRG.1043.1,blat.proc3829871.chain_1034,blat.proc3829871.chain_1035,blat.proc3829871.chain_1036	4
scaffold_17	retained_intron	13084889	13085573	+	asmbl_18434	none	STRG.20799.3,Trinity_GG_11410_c0_g1_i2,Trinity_GG_11410_c0_g1_i5,Trinity_GG_11410_c0_g1_i6,blat.proc3829881.chain_1615	5	STRG.20799.1,blat.proc3829881.chain_1618	2
scaffold_13	ends_in_intron	4458458	4458458	+	asmbl_10777	none	blat.proc3829879.chain_454	1	STRG.15755.1,STRG.15755.3,STRG.15755.4,Trinity_GG_8663_c0_g1_i6,Trinity_GG_8663_c0_g1_i7,blat.proc3829879.chain_448,blat.proc3829879.chain_449,blat.proc3829879.chain_451,blat.proc3829879.chain_452,blat.proc3829879.chain_453	10
scaffold_28	skipped_exon	7237911	7238320	+	asmbl_38341	none	Trinity_GG_16489_c0_g1_i2,blat.proc3829885.chain_2846	2	STRG.29764.1,blat.proc3829885.chain_2847	2
scaffold_12	retained_intron	12307824	12308727	+	asmbl_8949	none	STRG.15117.3,blat.proc3829877.chain_3595	2	STRG.15117.4,STRG.15117.6,blat.proc3829877.chain_3594	3
scaffold_16	retained_intron	4062380	4062655	-	asmbl_16219	none	Trinity_GG_27796_c0_g1_i4,blat.proc3829897.chain_230	2	STRG.19211.1,STRG.19211.2,blat.proc3829897.chain_228,blat.proc3829897.chain_229,blat.proc3829897.chain_231	5
scaffold_14	starts_in_intron	7249251	7249251	+	asmbl_12118	none	Trinity_GG_9406_c0_g1_i1,blat.proc3829879.chain_1821	2	STRG.17146.1,blat.proc3829879.chain_1820	2
scaffold_1	starts_in_intron	14609061	14609061	+	asmbl_2382	none	blat.proc3829871.chain_1094	1	STRG.1057.1,STRG.1057.2,blat.proc3829871.chain_1095	3
scaffold_1	alt_donor	13639028	13639029	-	asmbl_843	none	STRG.979.2	1	STRG.979.1,blat.proc3829887.chain_881	2
scaffold_3	alt_donor	14495729	14495730	-	asmbl_39330,asmbl_39331	none	Trinity_GG_19109_c0_g1_i1,Trinity_GG_19109_c0_g1_i2,blat.proc3829887.chain_3589,blat.proc3829887.chain_3590	4	STRG.3788.1,Trinity_GG_19109_c0_g2_i1	2
scaffold_2	spliced_intron	2324086	2324113	-	asmbl_22914	none	STRG.1680.2	1	STRG.1680.1	1
scaffold_52	ends_in_intron	1700	1700	-	asmbl_46484	none	Trinity_GG_33859_c0_g1_i2,blat.proc3829901.chain_3146	2	STRG.30037.3	1
scaffold_14	spliced_intron	12815903	12816062	-	asmbl_13595	none	STRG.17587.1,blat.proc3829895.chain_2275,blat.proc3829895.chain_2276	3	STRG.17587.2,blat.proc3829895.chain_2274	2
scaffold_1	retained_intron	12407759	12407879	+	asmbl_2192,asmbl_2194	none	STRG.851.1,Trinity_GG_482_c0_g1_i1,Trinity_GG_482_c0_g1_i2,Trinity_GG_482_c0_g1_i3,blat.proc3829871.chain_854,blat.proc3829871.chain_856,blat.proc3829871.chain_857	7	STRG.851.2,Trinity_GG_482_c0_g1_i4,blat.proc3829871.chain_855	3
scaffold_26	skipped_exon	1994624	1995447	+	asmbl_35260	none	STRG.27926.1	1	STRG.27926.2,blat.proc3829885.chain_907	2
scaffold_13	retained_intron	6396903	6397183	+	asmbl_10911	none	Trinity_GG_8718_c0_g1_i3,blat.proc3829879.chain_554	2	STRG.15914.2,STRG.15914.4,STRG.15914.5,Trinity_GG_8718_c0_g1_i4,Trinity_GG_8718_c0_g1_i5,Trinity_GG_8718_c0_g1_i8,Trinity_GG_8718_c0_g1_i9,blat.proc3829879.chain_549,blat.proc3829879.chain_550,blat.proc3829879.chain_552,blat.proc3829879.chain_556	11
scaffold_26	retained_intron	4440010	4440139	+	asmbl_35428,asmbl_35429	none	STRG.28132.1,STRG.28132.2,blat.proc3829885.chain_1080	3	blat.proc3829885.chain_1079	1
scaffold_8	spliced_intron	2846840	2846887	-	asmbl_52711	none	STRG.9800.2	1	STRG.9800.1,Trinity_GG_22479_c0_g1_i1,blat.proc3829891.chain_1968	3
scaffold_13	starts_in_intron	15736749	15736749	-	asmbl_10222	none	STRG.16605.2,blat.proc3829895.chain_1304	2	blat.proc3829895.chain_1303	1
scaffold_17	alt_acceptor	1447725	1447726	-	asmbl_18760	none	blat.proc3829897.chain_936	1	STRG.19973.1	1
scaffold_8	alt_acceptor	2690449	2690450	+	asmbl_51723,asmbl_51724	none	STRG.9799.1,STRG.9799.2	2	STRG.9799.3	1
scaffold_19	ends_in_intron	11483249	11483249	-	asmbl_21621	none	blat.proc3829897.chain_3193	1	STRG.22477.3,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184,blat.proc3829897.chain_3187,blat.proc3829897.chain_3188,blat.proc3829897.chain_3192	6
scaffold_9	alternate_exon	15539494	15539600	+	asmbl_54551	none	blat.proc3829877.chain_482	1	STRG.11736.1	1
scaffold_14	spliced_intron	7215812	7216426	+	asmbl_12112,asmbl_12114	none	STRG.17138.1,Trinity_GG_9432_c0_g1_i1,blat.proc3829879.chain_1870,blat.proc3829879.chain_1872	4	Trinity_GG_9432_c0_g1_i2,blat.proc3829879.chain_1871	2
scaffold_9	skipped_exon	16687742	16690662	-	asmbl_55577	none	blat.proc3829893.chain_202	1	STRG.11810.1,blat.proc3829893.chain_201	2
scaffold_26	spliced_intron	6703606	6703786	-	asmbl_34970,asmbl_34971,asmbl_34974,asmbl_34975	none	STRG.28358.1,STRG.28358.2,STRG.28358.3,blat.proc3829901.chain_1521,blat.proc3829901.chain_1524	5	blat.proc3829901.chain_1522,blat.proc3829901.chain_1523	2
scaffold_5	retained_intron	18560743	18560926	+	asmbl_44921	none	STRG.6978.5	1	STRG.6978.4,Trinity_GG_3847_c0_g1_i2,Trinity_GG_3847_c0_g1_i8,blat.proc3829873.chain_3146,blat.proc3829873.chain_3148	5
scaffold_2	alternate_exon	889047	889459	+	asmbl_24148	none	STRG.1564.5	1	blat.proc3829871.chain_1550	1
scaffold_1	retained_exon	10690545	10690595	-	asmbl_607	none	STRG.697.1,blat.proc3829887.chain_620	2	STRG.697.2,blat.proc3829887.chain_619	2
scaffold_11	alt_donor	2203529	2203530	-	asmbl_6460	none	STRG.13369.3	1	STRG.13369.1,STRG.13369.2,STRG.13369.4	3
scaffold_15	alt_donor	15915322	15915323	+	asmbl_14798	none	STRG.18967.2	1	STRG.18967.1	1
scaffold_21	spliced_intron	1653679	1654377	+	asmbl_28368,asmbl_28369	none	STRG.23807.1,Trinity_GG_13211_c0_g1_i2,Trinity_GG_13211_c0_g1_i6,blat.proc3829883.chain_988,blat.proc3829883.chain_990	5	Trinity_GG_13211_c0_g1_i3,Trinity_GG_13211_c0_g1_i7,blat.proc3829883.chain_989,blat.proc3829883.chain_992	4
scaffold_8	spliced_intron	4082268	4082465	+	asmbl_51797	none	STRG.9885.1,STRG.9885.2,blat.proc3829875.chain_2411	3	blat.proc3829875.chain_2413	1
scaffold_7	retained_intron	4545173	4545914	+	asmbl_50629	none	blat.proc3829875.chain_1243	1	STRG.8819.1,blat.proc3829875.chain_1241,blat.proc3829875.chain_1242,blat.proc3829875.chain_1244	4
scaffold_1	spliced_intron	8643816	8644313	-	asmbl_473,asmbl_474,asmbl_476,asmbl_482,asmbl_483	none	STRG.572.1,STRG.572.2,STRG.572.3,blat.proc3829887.chain_454,blat.proc3829887.chain_456,blat.proc3829887.chain_457,blat.proc3829887.chain_458	7	blat.proc3829887.chain_455	1
scaffold_2237	retained_intron	774	866	+	asmbl_30568	none	STRG.30705.1	1	STRG.30705.2	1
scaffold_14	alt_acceptor	8093515	8093516	-	asmbl_13231	none	STRG.17212.4,Trinity_GG_26645_c0_g1_i1,blat.proc3829895.chain_1891	3	STRG.17212.2,STRG.17212.3,Trinity_GG_26645_c0_g1_i4,Trinity_GG_26645_c0_g1_i5,blat.proc3829895.chain_1888,blat.proc3829895.chain_1893	6
scaffold_4	spliced_intron	17580414	17580979	+	asmbl_43402	none	STRG.5347.2	1	STRG.5347.4	1
scaffold_4	alt_acceptor	19348476	19348477	-	asmbl_42184	none	STRG.5515.1	1	STRG.5515.2	1
scaffold_3	starts_in_intron	15925970	15925970	-	asmbl_39405	none	blat.proc3829887.chain_3675	1	STRG.3872.1,STRG.3872.2,blat.proc3829887.chain_3678,blat.proc3829887.chain_3679	4
scaffold_14	spliced_intron	3244204	3244521	+	asmbl_11903,asmbl_11907,asmbl_11909	none	STRG.16901.1,blat.proc3829879.chain_1549,blat.proc3829879.chain_1553,blat.proc3829879.chain_1555	4	STRG.16901.2,Trinity_GG_9263_c0_g1_i8,blat.proc3829879.chain_1551,blat.proc3829879.chain_1554	4
scaffold_17	starts_in_intron	654851	654851	-	asmbl_18680	none	blat.proc3829897.chain_862	1	STRG.19899.1,Trinity_GG_28182_c0_g1_i2,blat.proc3829897.chain_860,blat.proc3829897.chain_861	4
scaffold_6	alternate_exon	16607689	16607857	+	asmbl_47648	none	STRG.8378.3	1	STRG.8378.2,blat.proc3829875.chain_759	2
scaffold_4	alt_acceptor	14436354	14436355	+	asmbl_43205	none	STRG.5060.1,blat.proc3829873.chain_1383	2	STRG.5060.2	1
scaffold_1	spliced_intron	12915848	12915960	+	asmbl_2257	none	STRG.919.1,blat.proc3829871.chain_976	2	STRG.919.2,blat.proc3829871.chain_974	2
scaffold_27	spliced_intron	4528661	4528689	+	asmbl_36261	none	blat.proc3829885.chain_2079	1	STRG.28885.1,STRG.28885.2	2
scaffold_17	starts_in_intron	13974029	13974029	-	asmbl_19444	none	blat.proc3829897.chain_1764	1	STRG.20876.1,STRG.20876.4,blat.proc3829897.chain_1766	3
scaffold_10	retained_intron	9071539	9071698	+	asmbl_4639	none	Trinity_GG_6979_c1_g1_i1,blat.proc3829877.chain_1226	2	STRG.12648.1,STRG.12648.2,STRG.12648.3,blat.proc3829877.chain_1225	4
scaffold_11	starts_in_intron	9717417	9717417	-	asmbl_6939	none	blat.proc3829893.chain_2406	1	STRG.13975.1,blat.proc3829893.chain_2407	2
scaffold_17	retained_intron	8875826	8875983	+	asmbl_18163	none	STRG.20496.2,blat.proc3829881.chain_1303	2	STRG.20496.1,blat.proc3829881.chain_1304	2
scaffold_9	alternate_exon	61577	61589	-	asmbl_54769	none	blat.proc3829891.chain_2964	1	STRG.10754.4,Trinity_GG_23008_c0_g2_i2,blat.proc3829891.chain_2965	3
scaffold_20	alternate_exon	6975539	6975651	+	asmbl_25840	none	STRG.23248.2,blat.proc3829883.chain_383	2	STRG.23248.1	1
scaffold_13	skipped_exon	2274573	2277261	-	asmbl_9401,asmbl_9406	none	STRG.15533.3,blat.proc3829895.chain_309,blat.proc3829895.chain_313	3	STRG.15533.1,blat.proc3829895.chain_316	2
scaffold_21	alt_acceptor	7318303	7318304	+	asmbl_28740	none	STRG.24238.2	1	STRG.24238.1,blat.proc3829883.chain_1310	2
scaffold_6	retained_exon	9132526	9132633	+	asmbl_47146,asmbl_47155,asmbl_47156,asmbl_47157	none	STRG.7784.1,blat.proc3829875.chain_198,blat.proc3829875.chain_201,blat.proc3829875.chain_203	4	STRG.7784.2,blat.proc3829875.chain_195,blat.proc3829875.chain_197	3
scaffold_23	retained_intron	10897406	10897606	+	asmbl_31182	none	blat.proc3829883.chain_3189	1	STRG.26269.1,blat.proc3829883.chain_3190	2
scaffold_13	retained_intron	6615541	6615731	+	asmbl_10939	none	blat.proc3829879.chain_589	1	STRG.15948.1,blat.proc3829879.chain_586,blat.proc3829879.chain_588	3
scaffold_4	retained_intron	14087005	14087119	+	asmbl_43174	none	Trinity_GG_2786_c0_g1_i1,blat.proc3829873.chain_1325	2	STRG.5028.1,STRG.5028.3,Trinity_GG_2786_c0_g1_i2,blat.proc3829873.chain_1324	4
scaffold_5	retained_intron	233770	233796	+	asmbl_43754	none	STRG.5584.1	1	STRG.5584.2	1
scaffold_11	retained_intron	11639424	11639532	+	asmbl_5950,asmbl_5951	none	blat.proc3829877.chain_2571,blat.proc3829877.chain_2572	2	STRG.14080.1,blat.proc3829877.chain_2568,blat.proc3829877.chain_2570,blat.proc3829877.chain_2573,blat.proc3829877.chain_2574	5
scaffold_16	retained_exon	7277693	7278101	+	asmbl_17128	none	STRG.19380.1,blat.proc3829881.chain_276	2	blat.proc3829881.chain_277	1
scaffold_2	alternate_exon	16360996	16361093	+	asmbl_25156,asmbl_25157,asmbl_25159	none	STRG.2574.1,STRG.2574.2,STRG.2574.3,Trinity_GG_1456_c0_g1_i1,Trinity_GG_1456_c0_g1_i3,blat.proc3829871.chain_2763,blat.proc3829871.chain_2764	7	STRG.2574.4,Trinity_GG_1456_c0_g1_i2,blat.proc3829871.chain_2762	3
scaffold_11	spliced_intron	9832014	9832321	+	asmbl_5869	none	Trinity_GG_7729_c0_g1_i7,blat.proc3829877.chain_2507	2	blat.proc3829877.chain_2508	1
scaffold_2	ends_in_intron	7215264	7215264	+	asmbl_24573,asmbl_24579	none	STRG.2054.3,Trinity_GG_1174_c0_g1_i5,Trinity_GG_1174_c0_g1_i8,blat.proc3829871.chain_2148,blat.proc3829871.chain_2151	5	STRG.2054.1,STRG.2054.2,Trinity_GG_1174_c0_g1_i7,blat.proc3829871.chain_2150,blat.proc3829871.chain_2154	5
scaffold_12	spliced_intron	14171917	14172236	+	asmbl_9030	none	STRG.15236.2,blat.proc3829877.chain_3706	2	Trinity_GG_8405_c0_g1_i9,blat.proc3829877.chain_3705	2
scaffold_13	retained_intron	14716696	14716771	+	asmbl_11453	none	blat.proc3829879.chain_1270	1	STRG.16511.1	1
scaffold_14	retained_intron	405082	405204	+	asmbl_11724	none	STRG.16722.7,Trinity_GG_9219_c0_g1_i17,blat.proc3829879.chain_1472	3	blat.proc3829879.chain_1469	1
scaffold_7	ends_in_intron	16817143	16817143	-	asmbl_50230,asmbl_50231,asmbl_50234,asmbl_50235	none	Trinity_GG_22407_c0_g1_i4,blat.proc3829891.chain_1826,blat.proc3829891.chain_1827,blat.proc3829891.chain_1828,blat.proc3829891.chain_1829	5	blat.proc3829891.chain_1830	1
scaffold_13	alt_donor	2500530	2500531	+	asmbl_10599	none	STRG.15545.2,Trinity_GG_8558_c0_g1_i1,blat.proc3829879.chain_264	3	STRG.15545.1,Trinity_GG_8558_c0_g1_i2,blat.proc3829879.chain_265	3
scaffold_3	starts_in_intron	14763306	14763306	-	asmbl_39363	none	STRG.3818.1	1	STRG.3818.2,STRG.3818.3	2
scaffold_7	ends_in_intron	9809847	9809847	-	asmbl_49885,asmbl_49886	none	STRG.9163.2,Trinity_GG_22167_c0_g1_i1,blat.proc3829891.chain_1383	3	STRG.9163.1	1
scaffold_10	starts_in_intron	6871325	6871325	-	asmbl_3429	none	Trinity_GG_24004_c0_g1_i5	1	STRG.12505.1,blat.proc3829893.chain_990,blat.proc3829893.chain_991,blat.proc3829893.chain_994,blat.proc3829893.chain_996,blat.proc3829893.chain_997,blat.proc3829893.chain_998,blat.proc3829893.chain_999	8
scaffold_3	alternate_exon	6063494	6063739	-	asmbl_38848,asmbl_38849,asmbl_38853	none	STRG.3254.1,STRG.3254.2,blat.proc3829887.chain_3022,blat.proc3829887.chain_3026	4	STRG.3254.3,blat.proc3829887.chain_3029	2
scaffold_16	spliced_intron	154458	154650	-	asmbl_16005	none	STRG.19000.1,Trinity_GG_27691_c0_g1_i8	2	Trinity_GG_27691_c0_g1_i4	1
scaffold_7	spliced_intron	5063228	5063324	-	asmbl_49685	none	STRG.8832.1	1	STRG.8832.2,blat.proc3829891.chain_1156	2
scaffold_13	skipped_exon	14561036	14563633	-	asmbl_10163,asmbl_10166	none	STRG.16497.1,STRG.16497.5,blat.proc3829895.chain_1172	3	STRG.16497.3,STRG.16497.4	2
scaffold_7	alternate_exon	17611628	17611814	+	asmbl_51369	none	Trinity_GG_5301_c0_g1_i2	1	STRG.9601.2	1
scaffold_15	retained_intron	4500541	4500727	+	asmbl_14092	none	Trinity_GG_9941_c0_g2_i1,blat.proc3829879.chain_2739	2	STRG.18164.1,blat.proc3829879.chain_2736,blat.proc3829879.chain_2737,blat.proc3829879.chain_2738	4
scaffold_17	alt_donor	11590052	11590053	-	asmbl_19333	none	STRG.20694.1,blat.proc3829897.chain_1657	2	blat.proc3829897.chain_1658	1
scaffold_23	starts_in_intron	7387740	7387740	+	asmbl_30985	none	Trinity_GG_14370_c0_g1_i1,blat.proc3829883.chain_2918	2	STRG.26032.1,Trinity_GG_14370_c0_g1_i2,blat.proc3829883.chain_2917	3
scaffold_4	ends_in_intron	8825504	8825504	-	asmbl_41533	none	blat.proc3829889.chain_744	1	STRG.4697.1,STRG.4697.2,blat.proc3829889.chain_743,blat.proc3829889.chain_745	4
scaffold_16	retained_intron	10548755	10548950	+	asmbl_17349	none	STRG.19609.1,blat.proc3829881.chain_453	2	blat.proc3829881.chain_454	1
scaffold_13	alt_donor	4342957	4342958	+	asmbl_10764	none	STRG.15747.2	1	STRG.15747.1,blat.proc3829879.chain_401	2
scaffold_19	starts_in_intron	11169120	11169120	+	asmbl_22478	none	blat.proc3829881.chain_3331	1	STRG.22441.1,blat.proc3829881.chain_3332,blat.proc3829881.chain_3333,blat.proc3829881.chain_3334,blat.proc3829881.chain_3335	5
scaffold_1	alternate_exon	17618853	17619008	-	asmbl_1049	none	STRG.1226.1	1	STRG.1226.2,blat.proc3829887.chain_1083	2
scaffold_3	retained_intron	14048563	14048700	+	asmbl_40456	none	STRG.3746.2,blat.proc3829873.chain_155	2	STRG.3746.1	1
scaffold_13	starts_in_intron	6995713	6995713	+	asmbl_10994	none	Trinity_GG_8775_c0_g1_i1,blat.proc3829879.chain_667	2	STRG.15971.1,blat.proc3829879.chain_666	2
scaffold_5	alternate_exon	15449834	15449885	-	asmbl_46055	none	STRG.6720.2	1	STRG.6720.1,blat.proc3829889.chain_2793	2
scaffold_28	alt_donor	2465285	2465286	+	asmbl_38068	none	STRG.29403.2,blat.proc3829885.chain_2487	2	STRG.29403.1,blat.proc3829885.chain_2486,blat.proc3829885.chain_2488	3
scaffold_9	starts_in_intron	16657985	16657985	-	asmbl_55567	none	blat.proc3829893.chain_212	1	STRG.11803.1,STRG.11803.2,STRG.11803.3,STRG.11803.4,blat.proc3829893.chain_209,blat.proc3829893.chain_211,blat.proc3829893.chain_213	7
scaffold_12	retained_intron	14100592	14100679	-	asmbl_8104	none	Trinity_GG_25544_c0_g1_i1,blat.proc3829893.chain_3672	2	STRG.15222.2,blat.proc3829893.chain_3671	2
scaffold_27	alt_acceptor	2787879	2787880	+	asmbl_36063,asmbl_36065,asmbl_36066	none	STRG.28736.1,blat.proc3829885.chain_1752,blat.proc3829885.chain_1755,blat.proc3829885.chain_1756	4	blat.proc3829885.chain_1753	1
scaffold_1	spliced_intron	1565206	1565368	+	asmbl_1488,asmbl_1489,asmbl_1491	none	STRG.100.1,STRG.100.2,blat.proc3829871.chain_136,blat.proc3829871.chain_137	4	STRG.100.3	1
scaffold_5	ends_in_intron	2549648	2549648	+	asmbl_43841	none	blat.proc3829873.chain_1899	1	STRG.5770.1,blat.proc3829873.chain_1898	2
scaffold_16	starts_in_intron	4094923	4094923	+	asmbl_16965,asmbl_16966,asmbl_16967	none	STRG.19214.3,blat.proc3829881.chain_77,blat.proc3829881.chain_82	3	STRG.19214.1,STRG.19214.2	2
scaffold_1	retained_intron	16478811	16478993	-	asmbl_997	none	blat.proc3829887.chain_1054	1	STRG.1157.1,STRG.1157.2,blat.proc3829887.chain_1053,blat.proc3829887.chain_1057	4
scaffold_7	starts_in_intron	15032339	15032339	-	asmbl_50171	none	STRG.9514.3	1	STRG.9514.1,STRG.9514.2	2
scaffold_12	skipped_exon	3330306	3331370	+	asmbl_8507	none	STRG.14546.2,blat.proc3829877.chain_3047	2	STRG.14546.1,STRG.14546.3,blat.proc3829877.chain_3049	3
scaffold_2	spliced_intron	8063944	8064058	+	asmbl_24644	none	STRG.2103.1,blat.proc3829871.chain_2094	2	Trinity_GG_1147_c0_g1_i1,blat.proc3829871.chain_2095	2
scaffold_19	retained_intron	11460464	11460646	-	asmbl_21596,asmbl_21598	none	blat.proc3829897.chain_3111,blat.proc3829897.chain_3115	2	STRG.22464.1,blat.proc3829897.chain_3112,blat.proc3829897.chain_3113,blat.proc3829897.chain_3116	4
scaffold_1	starts_in_intron	13129196	13129196	-	asmbl_804	none	blat.proc3829887.chain_828	1	STRG.951.1,blat.proc3829887.chain_829,blat.proc3829887.chain_830	3
scaffold_5	starts_in_intron	4730503	4730503	-	asmbl_45392	none	blat.proc3829889.chain_2009	1	STRG.5922.1,blat.proc3829889.chain_2010	2
scaffold_4	starts_in_intron	14657036	14657036	-	asmbl_41818	none	blat.proc3829889.chain_1103	1	STRG.5092.1,blat.proc3829889.chain_1102	2
scaffold_9	starts_in_intron	5473012	5473012	+	asmbl_54032	none	blat.proc3829875.chain_3610	1	STRG.11113.1,STRG.11113.2,Trinity_GG_6198_c0_g1_i3,blat.proc3829875.chain_3611	4
scaffold_4	alt_donor	12544261	12544262	-	asmbl_41668	none	blat.proc3829889.chain_956	1	STRG.4890.1,blat.proc3829889.chain_954,blat.proc3829889.chain_955	3
scaffold_15	starts_in_intron	11138020	11138020	-	asmbl_15498	none	blat.proc3829895.chain_3290	1	blat.proc3829895.chain_3283,blat.proc3829895.chain_3284,blat.proc3829895.chain_3286,blat.proc3829895.chain_3287,blat.proc3829895.chain_3288,blat.proc3829895.chain_3289	6
scaffold_8	alt_acceptor	8651668	8651669	+	asmbl_52006	none	STRG.10122.2	1	STRG.10122.1	1
scaffold_7	retained_exon	1439519	1440043	-	asmbl_49541	none	blat.proc3829891.chain_1002	1	STRG.8631.2	1
scaffold_1	alternate_exon	20989301	20989617	+	asmbl_2659	none	STRG.1431.3,Trinity_GG_838_c0_g1_i4,blat.proc3829871.chain_1500	3	STRG.1431.2,Trinity_GG_838_c0_g1_i1,blat.proc3829871.chain_1499	3
scaffold_28	spliced_intron	5638196	5638636	-	asmbl_37630,asmbl_37631,asmbl_37634,asmbl_37637	none	STRG.29677.1,STRG.29677.2,STRG.29677.4,Trinity_GG_33665_c0_g1_i3,blat.proc3829901.chain_2823,blat.proc3829901.chain_2825,blat.proc3829901.chain_2827	7	STRG.29677.3,blat.proc3829901.chain_2822	2
scaffold_9	retained_intron	2502740	2502833	-	asmbl_54843	none	STRG.10892.2	1	STRG.10892.1,blat.proc3829891.chain_3068	2
scaffold_4	spliced_intron	12689403	12689673	-	asmbl_41693,asmbl_41697	none	STRG.4909.1,blat.proc3829889.chain_919	2	Trinity_GG_19724_c0_g1_i4,blat.proc3829889.chain_921	2
scaffold_300	alternate_exon	1040	1706	+	asmbl_40851	none	STRG.30247.2	1	blat.proc3829885.chain_3281	1
scaffold_19	skipped_exon	12956159	12956739	-	asmbl_21778	none	Trinity_GG_29572_c0_g1_i2,blat.proc3829897.chain_3293	2	STRG.22600.1,Trinity_GG_29572_c0_g1_i4,Trinity_GG_29572_c0_g1_i6,Trinity_GG_29572_c0_g1_i7,blat.proc3829897.chain_3292,blat.proc3829897.chain_3294,blat.proc3829897.chain_3295	7
scaffold_24	spliced_intron	7175760	7176154	-	asmbl_33005	none	STRG.26749.2	1	STRG.26749.1	1
scaffold_12	retained_intron	14990698	14991070	-	asmbl_8155,asmbl_8156	none	STRG.15282.4,Trinity_GG_25571_c0_g1_i2,blat.proc3829893.chain_3743	3	STRG.15282.2,Trinity_GG_25571_c0_g1_i4,blat.proc3829893.chain_3744	3
scaffold_7	spliced_intron	9312119	9312215	+	asmbl_50958,asmbl_50959	none	STRG.9133.1,Trinity_GG_5081_c0_g1_i1,Trinity_GG_5081_c0_g1_i2,blat.proc3829875.chain_1611,blat.proc3829875.chain_1612	5	blat.proc3829875.chain_1610	1
scaffold_4	spliced_intron	19503268	19503343	-	asmbl_42194	none	blat.proc3829889.chain_1559	1	Trinity_GG_20092_c1_g1_i2,blat.proc3829889.chain_1557	2
scaffold_10	spliced_intron	5390545	5390782	+	asmbl_4447	none	STRG.12356.2	1	Trinity_GG_6848_c0_g1_i3,blat.proc3829877.chain_993,blat.proc3829877.chain_994	3
scaffold_14	ends_in_intron	8306436	8306436	+	asmbl_12200	none	blat.proc3829879.chain_1920	1	STRG.17241.1,STRG.17241.2,blat.proc3829879.chain_1921	3
scaffold_14	alternate_exon	2377518	2379388	-	asmbl_12915	none	STRG.16839.7,Trinity_GG_26463_c1_g1_i1	2	STRG.16839.9	1
scaffold_22	alt_acceptor	4357960	4357961	+	asmbl_29277,asmbl_29281	none	STRG.24841.1,blat.proc3829883.chain_1879,blat.proc3829883.chain_1882	3	STRG.24841.2,blat.proc3829883.chain_1877	2
scaffold_14	starts_in_intron	1339746	1339746	+	asmbl_11795	none	Trinity_GG_9235_c0_g1_i2,blat.proc3829879.chain_1507	2	STRG.16766.1,Trinity_GG_9235_c0_g1_i1,blat.proc3829879.chain_1508	3
scaffold_2	retained_intron	884927	885046	+	asmbl_24143	none	blat.proc3829871.chain_1567	1	STRG.1563.2,STRG.1563.3,blat.proc3829871.chain_1566	3
scaffold_13	retained_intron	7935394	7935495	-	asmbl_9873	none	Trinity_GG_26026_c0_g1_i4,blat.proc3829895.chain_801	2	STRG.16055.1,STRG.16055.2,STRG.16055.3,blat.proc3829895.chain_798,blat.proc3829895.chain_799,blat.proc3829895.chain_800,blat.proc3829895.chain_803	7
scaffold_6	spliced_intron	13229094	13229383	+	asmbl_47440,asmbl_47446,asmbl_47447	none	STRG.8077.5,STRG.8077.6,blat.proc3829875.chain_505	3	STRG.8077.2,STRG.8077.3,STRG.8077.7,blat.proc3829875.chain_500,blat.proc3829875.chain_501,blat.proc3829875.chain_503,blat.proc3829875.chain_506	7
scaffold_10	starts_in_intron	5396207	5396207	-	asmbl_3274,asmbl_3277	none	STRG.12357.2,blat.proc3829893.chain_820	2	STRG.12357.1,blat.proc3829893.chain_821	2
scaffold_2	starts_in_intron	15482813	15482813	+	asmbl_25074	none	blat.proc3829871.chain_2691	1	STRG.2495.1,blat.proc3829871.chain_2692	2
scaffold_10	starts_in_intron	11970020	11970020	+	asmbl_4788	none	Trinity_GG_7032_c0_g1_i13,blat.proc3829877.chain_1318	2	STRG.12831.1,STRG.12831.3,Trinity_GG_7032_c0_g1_i14,blat.proc3829877.chain_1313,blat.proc3829877.chain_1317,blat.proc3829877.chain_1319,blat.proc3829877.chain_1320,blat.proc3829877.chain_1321,blat.proc3829877.chain_1322	9
scaffold_4	alt_donor	5648952	5648953	-	asmbl_41370	none	blat.proc3829889.chain_619	1	STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_614	4
scaffold_13	starts_in_intron	5821488	5821488	+	asmbl_10884	none	Trinity_GG_8766_c0_g1_i8,blat.proc3829879.chain_641	2	STRG.15880.1,STRG.15880.3,STRG.15880.4	3
scaffold_10	alternate_exon	2786188	2786562	-	asmbl_3049	none	Trinity_GG_23730_c0_g2_i1,blat.proc3829893.chain_520	2	STRG.12096.1,STRG.12096.2,Trinity_GG_23730_c0_g1_i2,Trinity_GG_23730_c0_g1_i4,Trinity_GG_23730_c0_g1_i5,blat.proc3829893.chain_515,blat.proc3829893.chain_516,blat.proc3829893.chain_517,blat.proc3829893.chain_518,blat.proc3829893.chain_519	10
scaffold_27	alt_donor	341027	341028	-	asmbl_36624,asmbl_36626,asmbl_36627	none	STRG.28542.1,STRG.28542.3,blat.proc3829901.chain_1659,blat.proc3829901.chain_1660,blat.proc3829901.chain_1661	5	STRG.28542.2,blat.proc3829901.chain_1662	2
scaffold_9	retained_intron	16558842	16561320	-	asmbl_55544,asmbl_55546,asmbl_55547	none	STRG.11797.2,STRG.11797.3,STRG.11797.6,Trinity_GG_23481_c0_g1_i1,Trinity_GG_23481_c0_g2_i1,blat.proc3829893.chain_81,blat.proc3829893.chain_82	7	STRG.11797.1,STRG.11797.4,Trinity_GG_23481_c0_g3_i5,Trinity_GG_23481_c0_g3_i6,blat.proc3829893.chain_85,blat.proc3829893.chain_88	6
scaffold_1	spliced_intron	175065	175198	-	asmbl_14,asmbl_15	none	STRG.15.1,STRG.15.2,blat.proc3829885.chain_3683,blat.proc3829885.chain_3685	4	Trinity_GG_17028_c0_g1_i1,Trinity_GG_17028_c0_g1_i4,Trinity_GG_17028_c0_g1_i5,blat.proc3829885.chain_3684,blat.proc3829885.chain_3686,blat.proc3829885.chain_3687,blat.proc3829885.chain_3688	7
scaffold_14	alt_acceptor	8405948	8405949	-	asmbl_13290,asmbl_13292	none	STRG.17264.1,STRG.17264.2,blat.proc3829895.chain_1977	3	STRG.17264.3,STRG.17264.4	2
scaffold_11	retained_intron	8399407	8399497	+	asmbl_5729	none	blat.proc3829877.chain_2343	1	STRG.13845.1,STRG.13845.2,Trinity_GG_7638_c0_g1_i6,blat.proc3829877.chain_2341,blat.proc3829877.chain_2342,blat.proc3829877.chain_2344,blat.proc3829877.chain_2345,blat.proc3829877.chain_2346	8
scaffold_2	retained_intron	7782195	7782467	+	asmbl_24609	none	STRG.2076.7,blat.proc3829871.chain_2202	2	STRG.2076.1,STRG.2076.2,STRG.2076.4,blat.proc3829871.chain_2203,blat.proc3829871.chain_2205,blat.proc3829871.chain_2208,blat.proc3829871.chain_2211,blat.proc3829871.chain_2213	8
scaffold_13	alt_acceptor	7192850	7192851	-	asmbl_9826,asmbl_9827	none	STRG.16001.4,blat.proc3829895.chain_842	2	STRG.16001.1,STRG.16001.2,STRG.16001.3,blat.proc3829895.chain_839,blat.proc3829895.chain_840,blat.proc3829895.chain_841,blat.proc3829895.chain_843,blat.proc3829895.chain_844	8
scaffold_7	retained_intron	18790534	18791094	+	asmbl_51421,asmbl_51422,asmbl_51423,asmbl_51424,asmbl_51426	none	STRG.9691.1,STRG.9691.2,STRG.9691.3,STRG.9691.5,blat.proc3829875.chain_2056	5	STRG.9691.4	1
scaffold_20	alternate_exon	964630	967145	+	asmbl_25549,asmbl_25551	none	STRG.22792.2,STRG.22792.3,blat.proc3829881.chain_3730	3	Trinity_GG_12589_c0_g1_i3,Trinity_GG_12589_c0_g1_i4	2
scaffold_12	alt_donor	11222507	11222508	-	asmbl_7923	none	STRG.15050.2,blat.proc3829893.chain_3441	2	STRG.15050.1,blat.proc3829893.chain_3442	2
scaffold_17	retained_intron	13196847	13197082	-	asmbl_19410	none	blat.proc3829897.chain_1736	1	STRG.20803.2,blat.proc3829897.chain_1732	2
scaffold_15	spliced_intron	13325950	13326951	+	asmbl_14571,asmbl_14575,asmbl_14580,asmbl_14581	none	STRG.18763.1,Trinity_GG_10264_c0_g1_i2,blat.proc3829879.chain_3300,blat.proc3829879.chain_3301,blat.proc3829879.chain_3302	5	Trinity_GG_10264_c0_g1_i4,Trinity_GG_10264_c0_g1_i6,blat.proc3829879.chain_3296,blat.proc3829879.chain_3297,blat.proc3829879.chain_3298,blat.proc3829879.chain_3299,blat.proc3829879.chain_3303,blat.proc3829879.chain_3304	8
scaffold_15	starts_in_intron	12792019	12792019	+	asmbl_14554	none	Trinity_GG_10282_c0_g1_i1,blat.proc3829879.chain_3336	2	STRG.18722.1,Trinity_GG_10282_c0_g1_i2,blat.proc3829879.chain_3337	3
scaffold_2	retained_intron	3764034	3764093	-	asmbl_23021	none	STRG.1811.1	1	blat.proc3829887.chain_1630	1
scaffold_22	spliced_intron	507350	507876	-	asmbl_29852,asmbl_29853,asmbl_29854,asmbl_29855,asmbl_29860,asmbl_29861,asmbl_29863,asmbl_29865,asmbl_29868	none	STRG.24685.2,STRG.24685.3,STRG.24685.4,STRG.24685.5,Trinity_GG_30818_c0_g1_i13,Trinity_GG_30818_c0_g1_i15,Trinity_GG_30818_c0_g1_i17,Trinity_GG_30818_c0_g1_i19,Trinity_GG_30818_c0_g1_i8,blat.proc3829899.chain_1823,blat.proc3829899.chain_1824,blat.proc3829899.chain_1825,blat.proc3829899.chain_1827,blat.proc3829899.chain_1830,blat.proc3829899.chain_1831,blat.proc3829899.chain_1832,blat.proc3829899.chain_1836	17	Trinity_GG_30818_c0_g1_i3,Trinity_GG_30818_c0_g1_i7,blat.proc3829899.chain_1828,blat.proc3829899.chain_1833	4
scaffold_10	retained_intron	17204036	17204220	-	asmbl_3941	none	Trinity_GG_24359_c1_g1_i6,blat.proc3829893.chain_1603	2	blat.proc3829893.chain_1602,blat.proc3829893.chain_1606	2
scaffold_25	spliced_intron	9291594	9291672	+	asmbl_33793	none	STRG.27727.1,blat.proc3829885.chain_715	2	Trinity_GG_15281_c0_g1_i3,blat.proc3829885.chain_714	2
scaffold_2	retained_intron	15451380	15451457	+	asmbl_25066	none	blat.proc3829871.chain_2682	1	STRG.2500.1,STRG.2500.2,blat.proc3829871.chain_2679,blat.proc3829871.chain_2680,blat.proc3829871.chain_2681,blat.proc3829871.chain_2683,blat.proc3829871.chain_2684,blat.proc3829871.chain_2685	8
scaffold_1	starts_in_intron	4118674	4118674	+	asmbl_1635	none	blat.proc3829871.chain_303	1	STRG.246.1,blat.proc3829871.chain_302	2
scaffold_25	alt_donor	4539033	4539034	+	asmbl_33511	none	blat.proc3829885.chain_415	1	STRG.27374.1,blat.proc3829885.chain_414	2
scaffold_3	spliced_intron	3890125	3890210	+	asmbl_39939	none	STRG.3105.1,blat.proc3829871.chain_3274,blat.proc3829871.chain_3275	3	STRG.3105.2	1
scaffold_17	alt_donor	9621583	9621584	-	asmbl_19235	none	STRG.20572.2,Trinity_GG_28560_c0_g1_i1,blat.proc3829897.chain_1495	3	STRG.20572.1,Trinity_GG_28560_c0_g1_i2,blat.proc3829897.chain_1496	3
scaffold_34	starts_in_intron	2972	2972	-	asmbl_40954	none	blat.proc3829901.chain_3103,blat.proc3829901.chain_3104	2	STRG.29999.1	1
scaffold_2	skipped_exon	481946	483382	-	asmbl_22830	none	STRG.1533.3	1	STRG.1533.1,STRG.1533.2,blat.proc3829887.chain_1416	3
scaffold_2	retained_intron	6765473	6765659	+	asmbl_24523,asmbl_24524,asmbl_24525	none	Trinity_GG_1102_c0_g1_i10,Trinity_GG_1102_c0_g1_i4,Trinity_GG_1102_c0_g1_i6,blat.proc3829871.chain_2006,blat.proc3829871.chain_2007,blat.proc3829871.chain_2013	6	STRG.2035.1,Trinity_GG_1102_c0_g1_i1,Trinity_GG_1102_c0_g1_i11,Trinity_GG_1102_c0_g1_i2,Trinity_GG_1102_c0_g1_i5,Trinity_GG_1102_c0_g1_i7,blat.proc3829871.chain_2005,blat.proc3829871.chain_2008,blat.proc3829871.chain_2010,blat.proc3829871.chain_2011,blat.proc3829871.chain_2012	11
scaffold_6	starts_in_intron	17039268	17039268	+	asmbl_47663	none	blat.proc3829875.chain_763	1	STRG.8407.1	1
scaffold_27	alt_acceptor	5660577	5660578	+	asmbl_36307	none	STRG.28952.1,blat.proc3829885.chain_2030,blat.proc3829885.chain_2031	3	STRG.28952.2,blat.proc3829885.chain_2032	2
scaffold_4	alternate_exon	16719783	16721665	-	asmbl_41958	none	STRG.5251.2,blat.proc3829889.chain_1314,blat.proc3829889.chain_1315	3	STRG.5251.1,blat.proc3829889.chain_1313	2
scaffold_27	spliced_intron	1419227	1419252	+	asmbl_35964,asmbl_35965	none	STRG.28618.1,STRG.28618.2	2	STRG.28618.3,Trinity_GG_15851_c0_g1_i2	2
scaffold_3	alt_donor	10628322	10628323	+	asmbl_40234,asmbl_40241	none	STRG.3509.3,blat.proc3829871.chain_3607	2	STRG.3509.1,STRG.3509.2,blat.proc3829871.chain_3605,blat.proc3829871.chain_3608	4
scaffold_1	ends_in_intron	38814	38814	-	asmbl_7	none	blat.proc3829885.chain_3731	1	STRG.19.1,STRG.19.2,STRG.19.3,blat.proc3829885.chain_3729,blat.proc3829885.chain_3732	5
scaffold_10	spliced_intron	3065795	3065893	-	asmbl_3072,asmbl_3074	none	STRG.12119.3,blat.proc3829893.chain_572	2	STRG.12119.2,blat.proc3829893.chain_570,blat.proc3829893.chain_571,blat.proc3829893.chain_573	4
scaffold_1	skipped_exon	12463351	12464319	-	asmbl_726	none	STRG.864.2	1	STRG.864.1	1
scaffold_23	starts_in_intron	7916159	7916159	-	asmbl_31776,asmbl_31778	none	STRG.26078.1,blat.proc3829899.chain_3206,blat.proc3829899.chain_3207	3	STRG.26078.2,STRG.26078.4,blat.proc3829899.chain_3204,blat.proc3829899.chain_3208	4
scaffold_11	spliced_intron	3901228	3901407	+	asmbl_5429	none	STRG.13497.2	1	STRG.13497.1	1
scaffold_24	alternate_exon	5936455	5950307	+	asmbl_32281,asmbl_32282	none	blat.proc3829883.chain_3547,blat.proc3829883.chain_3548	2	blat.proc3829883.chain_3538	1
scaffold_17	alt_acceptor	12221332	12221333	-	asmbl_19367	none	STRG.20749.1,blat.proc3829897.chain_1685	2	STRG.20749.2	1
scaffold_6	alternate_exon	2850935	2851116	-	asmbl_48118	none	STRG.7274.1,blat.proc3829889.chain_3268	2	STRG.7274.2	1
scaffold_27	ends_in_intron	4505551	4505551	+	asmbl_36251	none	blat.proc3829885.chain_2010	1	STRG.28882.1	1
scaffold_10	alt_donor	6615820	6615821	+	asmbl_4522	none	STRG.12473.1	1	blat.proc3829877.chain_1083	1
scaffold_1	retained_intron	4226072	4226335	+	asmbl_1639	none	Trinity_GG_179_c0_g1_i2,blat.proc3829871.chain_305	2	STRG.249.1,blat.proc3829871.chain_306,blat.proc3829871.chain_307	3
scaffold_9	spliced_intron	8180390	8180907	+	asmbl_54147	none	blat.proc3829877.chain_11	1	STRG.11240.1,Trinity_GG_6281_c0_g1_i4,blat.proc3829877.chain_10,blat.proc3829877.chain_12	4
scaffold_6	ends_in_intron	7305263	7305263	+	asmbl_47002	none	blat.proc3829873.chain_3744	1	STRG.7631.1,Trinity_GG_4176_c0_g1_i3,blat.proc3829873.chain_3742	3
scaffold_15	retained_exon	15761550	15761726	+	asmbl_14770	none	STRG.18952.2,Trinity_GG_10391_c0_g1_i1,blat.proc3829879.chain_3571	3	STRG.18952.1,Trinity_GG_10391_c0_g1_i2,blat.proc3829879.chain_3570	3
scaffold_23	retained_exon	2615904	2615926	-	asmbl_31469,asmbl_31471,asmbl_31473,asmbl_31474	none	STRG.25709.1,STRG.25709.2,blat.proc3829899.chain_2843,blat.proc3829899.chain_2844,blat.proc3829899.chain_2845	5	STRG.25709.3,STRG.25709.5,blat.proc3829899.chain_2846	3
scaffold_4	alt_donor	14571048	14571049	+	asmbl_43222	none	STRG.5074.1,blat.proc3829873.chain_1399	2	STRG.5074.2,blat.proc3829873.chain_1400	2
scaffold_27	spliced_intron	1551570	1551779	+	asmbl_35981,asmbl_35984,asmbl_35986	none	STRG.28623.1,STRG.28623.2,STRG.28623.3,Trinity_GG_15852_c0_g1_i3,blat.proc3829885.chain_1669,blat.proc3829885.chain_1672	6	blat.proc3829885.chain_1673	1
scaffold_21	starts_in_intron	7495994	7495994	-	asmbl_27847	none	blat.proc3829899.chain_1285	1	STRG.24266.1,STRG.24266.2,blat.proc3829899.chain_1286	3
scaffold_8	retained_intron	12194719	12195488	-	asmbl_53184	none	Trinity_GG_22786_c1_g1_i1,blat.proc3829891.chain_2519,blat.proc3829891.chain_2521	3	STRG.10397.1,blat.proc3829891.chain_2520	2
scaffold_2	ends_in_intron	924731	924731	+	asmbl_24172	none	blat.proc3829871.chain_1543	1	STRG.1569.3,STRG.1569.4,blat.proc3829871.chain_1535,blat.proc3829871.chain_1542	4
scaffold_8	retained_intron	16499324	16499685	-	asmbl_53420,asmbl_53421,asmbl_53423,asmbl_53425,asmbl_53427,asmbl_53429	none	STRG.10621.3,STRG.10621.4,blat.proc3829891.chain_2859,blat.proc3829891.chain_2862,blat.proc3829891.chain_2865,blat.proc3829891.chain_2871	6	STRG.10621.5	1
scaffold_25	alt_donor	1296791	1296792	+	asmbl_33362	none	STRG.27156.1	1	blat.proc3829901.chain_462	1
scaffold_12	starts_in_intron	16400650	16400650	+	asmbl_9137	none	blat.proc3829877.chain_3732	1	STRG.15385.2,STRG.15385.3,STRG.15385.5,Trinity_GG_8419_c0_g1_i5,Trinity_GG_8419_c0_g1_i7,blat.proc3829877.chain_3733,blat.proc3829877.chain_3738	7
scaffold_18	alt_acceptor	7868806	7868807	+	asmbl_20822,asmbl_20826,asmbl_20827,asmbl_20828,asmbl_20829,asmbl_20832,asmbl_20833	none	STRG.21477.1,STRG.21477.2,STRG.21477.3,STRG.21477.4,STRG.21477.5,blat.proc3829881.chain_2467,blat.proc3829881.chain_2469,blat.proc3829881.chain_2470,blat.proc3829881.chain_2472,blat.proc3829881.chain_2473,blat.proc3829881.chain_2474	11	STRG.21477.6,Trinity_GG_11877_c0_g1_i6,blat.proc3829881.chain_2476,blat.proc3829881.chain_2477	4
scaffold_5	alt_acceptor	1548461	1548462	-	asmbl_45250,asmbl_45251	none	STRG.5706.2,STRG.5706.3	2	STRG.5706.1,blat.proc3829889.chain_1819,blat.proc3829889.chain_1821,blat.proc3829901.chain_3397,blat.proc3829901.chain_3398	5
scaffold_13	retained_intron	2506963	2507489	+	asmbl_10602,asmbl_10605	none	STRG.15546.3,Trinity_GG_8559_c0_g1_i3,Trinity_GG_8559_c0_g1_i4,blat.proc3829879.chain_269,blat.proc3829879.chain_270	5	STRG.15546.1,Trinity_GG_8559_c0_g1_i5,blat.proc3829879.chain_268	3
scaffold_21	starts_in_intron	10297613	10297613	-	asmbl_28053	none	blat.proc3829899.chain_1603	1	STRG.24482.1	1
scaffold_19	spliced_intron	6669350	6669598	+	asmbl_22229	none	STRG.22169.3,blat.proc3829881.chain_3027	2	STRG.22169.1,STRG.22169.2,blat.proc3829881.chain_3026	3
scaffold_11	alternate_exon	210583	210774	-	asmbl_6355	none	STRG.13239.1	1	STRG.13239.2	1
scaffold_26	starts_in_intron	35229	35229	-	asmbl_34640	none	blat.proc3829901.chain_1091	1	STRG.27818.1,blat.proc3829901.chain_1090	2
scaffold_6	alternate_exon	14509104	14509598	+	asmbl_47555	none	STRG.8202.1,Trinity_GG_4524_c0_g1_i2,Trinity_GG_4524_c1_g1_i1,blat.proc3829875.chain_636,blat.proc3829875.chain_637	5	STRG.8202.2,Trinity_GG_4524_c2_g1_i1,blat.proc3829875.chain_638	3
scaffold_1	spliced_intron	12745169	12745369	-	asmbl_757,asmbl_761	none	STRG.892.3,STRG.892.4,blat.proc3829887.chain_755	3	STRG.892.2,blat.proc3829887.chain_756	2
scaffold_13	starts_in_intron	6852136	6852136	+	asmbl_10974	none	blat.proc3829879.chain_672	1	STRG.15962.1,blat.proc3829879.chain_671	2
scaffold_4	retained_intron	19674267	19674337	-	asmbl_42239	none	STRG.5555.2	1	STRG.5555.1	1
scaffold_19	retained_exon	9376376	9376478	-	asmbl_21537	none	STRG.22362.2	1	STRG.22362.1,blat.proc3829897.chain_3074	2
scaffold_7	alt_acceptor	12346576	12346577	+	asmbl_51124	none	STRG.9317.1,blat.proc3829875.chain_1785	2	STRG.9317.2	1
scaffold_12	spliced_intron	16401775	16403321	+	asmbl_9136	none	STRG.15385.5,Trinity_GG_8419_c0_g1_i7,blat.proc3829877.chain_3738	3	STRG.15385.1,STRG.15385.2,STRG.15385.3,STRG.15385.6,Trinity_GG_8419_c0_g1_i1,Trinity_GG_8419_c0_g1_i3,Trinity_GG_8419_c0_g1_i5,blat.proc3829877.chain_3733,blat.proc3829877.chain_3734,blat.proc3829877.chain_3737	10
scaffold_52	alt_acceptor	14423	14424	+	asmbl_46478,asmbl_46479	none	STRG.30039.1,STRG.30039.2,blat.proc3829885.chain_3103,blat.proc3829885.chain_3105	4	STRG.30039.3,blat.proc3829885.chain_3104	2
scaffold_27	alt_acceptor	6241722	6241723	+	asmbl_36344	none	Trinity_GG_16050_c0_g1_i1,blat.proc3829885.chain_2131	2	STRG.28991.1,Trinity_GG_16050_c0_g1_i2,blat.proc3829885.chain_2132	3
scaffold_70	starts_in_intron	6652	6652	+	asmbl_51548	none	Trinity_GG_16661_c0_g1_i3	1	STRG.30084.1,blat.proc3829885.chain_3149	2
scaffold_17	alternate_exon	9569214	9571578	+	asmbl_18243,asmbl_18244	none	STRG.20567.1,STRG.20567.2,blat.proc3829881.chain_1332,blat.proc3829881.chain_1334	4	Trinity_GG_11245_c0_g1_i1,blat.proc3829881.chain_1333	2
scaffold_2	retained_exon	924482	924504	+	asmbl_24174,asmbl_24175	none	blat.proc3829871.chain_1535,blat.proc3829871.chain_1542	2	STRG.1569.1,blat.proc3829871.chain_1534,blat.proc3829871.chain_1537	3
scaffold_3	alternate_exon	1556183	1556313	-	asmbl_38678	none	blat.proc3829887.chain_2715	1	STRG.2981.2	1
scaffold_16	starts_in_intron	13218554	13218554	+	asmbl_17458	none	Trinity_GG_10816_c0_g1_i4,blat.proc3829881.chain_597	2	STRG.19770.1,STRG.19770.2,STRG.19770.3,blat.proc3829881.chain_595,blat.proc3829881.chain_596,blat.proc3829881.chain_598,blat.proc3829881.chain_599,blat.proc3829881.chain_600	8
scaffold_24	alt_acceptor	1517751	1517752	+	asmbl_32088	none	STRG.26383.1,blat.proc3829899.chain_3429	2	STRG.26383.2	1
scaffold_1	alt_acceptor	15122072	15122073	+	asmbl_2401,asmbl_2403	none	STRG.1085.1,STRG.1085.2,blat.proc3829871.chain_1151,blat.proc3829871.chain_1152	4	STRG.1085.3	1
scaffold_13	spliced_intron	3530974	3531292	+	asmbl_10684,asmbl_10685,asmbl_10686,asmbl_10688	none	STRG.15655.1,STRG.15655.2,blat.proc3829879.chain_361,blat.proc3829879.chain_362,blat.proc3829879.chain_363,blat.proc3829879.chain_365	6	blat.proc3829879.chain_364	1
scaffold_11	alt_donor	10396942	10396943	+	asmbl_5905,asmbl_5907,asmbl_5908	none	STRG.14037.1,blat.proc3829877.chain_2425,blat.proc3829877.chain_2427,blat.proc3829877.chain_2428	4	STRG.14037.2,blat.proc3829877.chain_2426	2
scaffold_4	starts_in_intron	16539093	16539093	-	asmbl_41942	none	blat.proc3829889.chain_1284	1	STRG.5232.1,STRG.5232.2,blat.proc3829889.chain_1285,blat.proc3829889.chain_1286	4
scaffold_24	alternate_exon	5936455	5951910	+	asmbl_32270,asmbl_32280	none	blat.proc3829883.chain_3543,blat.proc3829883.chain_3545	2	blat.proc3829883.chain_3538	1
scaffold_14	retained_intron	15347218	15347549	-	asmbl_13698	none	blat.proc3829895.chain_2516	1	STRG.17749.1,STRG.17749.2,STRG.17749.3,blat.proc3829895.chain_2512,blat.proc3829895.chain_2513,blat.proc3829895.chain_2514	6
scaffold_28	retained_exon	6546833	6546895	-	asmbl_37679	none	STRG.29730.4	1	STRG.29730.3	1
scaffold_25	ends_in_intron	1857797	1857797	-	asmbl_34032	none	Trinity_GG_32247_c2_g1_i1	1	STRG.27176.1	1
scaffold_19	ends_in_intron	12107854	12107854	-	asmbl_21671	none	Trinity_GG_29538_c0_g1_i6,blat.proc3829897.chain_3208	2	STRG.22526.1,STRG.22526.3,STRG.22526.4,blat.proc3829897.chain_3209,blat.proc3829897.chain_3211	5
scaffold_3	retained_intron	17144430	17144593	+	asmbl_40618,asmbl_40620	none	STRG.3949.3,Trinity_GG_2219_c0_g1_i2	2	STRG.3949.1,STRG.3949.2,blat.proc3829873.chain_352	3
scaffold_8	retained_intron	12626109	12626425	-	asmbl_53215,asmbl_53216	none	blat.proc3829891.chain_2559,blat.proc3829891.chain_2560	2	STRG.10429.1,blat.proc3829891.chain_2557,blat.proc3829891.chain_2558	3
scaffold_12	retained_intron	12308782	12309134	+	asmbl_8949,asmbl_8953	none	STRG.15117.3,STRG.15117.5,blat.proc3829877.chain_3595	3	STRG.15117.4,STRG.15117.6,blat.proc3829877.chain_3594	3
scaffold_17	alt_acceptor	14964965	14964966	-	asmbl_19501	none	STRG.20946.1,blat.proc3829897.chain_1771	2	blat.proc3829897.chain_1770	1
scaffold_16	alternate_exon	4141423	4141678	-	asmbl_16227	none	STRG.19217.2	1	blat.proc3829897.chain_298	1
scaffold_5	starts_in_intron	2231842	2231842	+	asmbl_43825	none	Trinity_GG_3148_c0_g1_i2,blat.proc3829873.chain_1932	2	STRG.5749.1,blat.proc3829873.chain_1933	2
scaffold_5	alt_donor	3774961	3774962	+	asmbl_43901,asmbl_43902,asmbl_43903	none	STRG.5834.1,STRG.5834.2,blat.proc3829873.chain_2012,blat.proc3829873.chain_2013	4	STRG.5834.3	1
scaffold_9	retained_exon	6992555	6992588	+	asmbl_54107	none	STRG.11201.2,blat.proc3829875.chain_3703	2	STRG.11201.3,blat.proc3829875.chain_3701	2
scaffold_9	starts_in_intron	8401282	8401282	-	asmbl_55094	none	STRG.11250.2,Trinity_GG_23247_c0_g1_i1,blat.proc3829891.chain_3404	3	STRG.11250.1,Trinity_GG_23247_c0_g1_i2,blat.proc3829891.chain_3405	3
scaffold_5	spliced_intron	18249279	18249475	+	asmbl_44883	none	STRG.6951.2,blat.proc3829873.chain_3084	2	STRG.6951.1,STRG.6951.3,STRG.6951.4,Trinity_GG_3817_c0_g1_i2,blat.proc3829873.chain_3083,blat.proc3829873.chain_3085	6
scaffold_9	alt_acceptor	3413981	3413982	-	asmbl_54867,asmbl_54870	none	STRG.10946.3,blat.proc3829891.chain_3124	2	STRG.10946.1,blat.proc3829891.chain_3122	2
scaffold_14	retained_intron	11676922	11677256	-	asmbl_13506	none	STRG.17497.3,blat.proc3829895.chain_2193	2	STRG.17497.2,blat.proc3829895.chain_2194	2
scaffold_5	alternate_exon	7320077	7320646	+	asmbl_44155	none	Trinity_GG_3345_c0_g2_i1	1	Trinity_GG_3345_c0_g1_i1,Trinity_GG_3345_c0_g1_i2,blat.proc3829873.chain_2275,blat.proc3829873.chain_2276	4
scaffold_2	starts_in_intron	19884329	19884329	-	asmbl_23893	none	blat.proc3829887.chain_2649	1	STRG.2833.1,blat.proc3829887.chain_2650	2
scaffold_26	alternate_exon	435600	435789	+	asmbl_35216	none	blat.proc3829885.chain_867	1	blat.proc3829885.chain_868	1
scaffold_1	alt_acceptor	14223359	14223360	+	asmbl_2336	none	STRG.1010.1,blat.proc3829871.chain_1039	2	STRG.1010.2,blat.proc3829871.chain_1038	2
scaffold_20	skipped_exon	7861676	7863975	-	asmbl_26853,asmbl_26856	none	STRG.23322.2,blat.proc3829899.chain_375	2	STRG.23322.1,blat.proc3829899.chain_377,blat.proc3829899.chain_378	3
scaffold_6	starts_in_intron	19034458	19034458	+	asmbl_47808	none	Trinity_GG_4682_c0_g1_i2,blat.proc3829875.chain_921	2	STRG.8560.1,blat.proc3829875.chain_922	2
scaffold_24	alternate_exon	9121131	9121546	+	asmbl_32517	none	STRG.26917.1,Trinity_GG_14864_c0_g1_i4,blat.proc3829885.chain_20	3	blat.proc3829885.chain_22	1
scaffold_22	retained_intron	497867	498066	+	asmbl_29154	none	STRG.24682.2,blat.proc3829883.chain_1657	2	STRG.24682.3	1
scaffold_5	skipped_exon	10145770	10146230	-	asmbl_45697	none	STRG.6300.2	1	STRG.6300.1,blat.proc3829889.chain_2397,blat.proc3829889.chain_2398	3
scaffold_25	alt_donor	3677684	3677685	+	asmbl_33444	none	STRG.27295.1,blat.proc3829885.chain_268	2	STRG.27295.2	1
scaffold_17	skipped_exon	12368475	12371115	-	asmbl_19373,asmbl_19374	none	STRG.20776.2,blat.proc3829897.chain_1640	2	STRG.20776.1,STRG.20776.3	2
scaffold_15	retained_exon	3899298	3899355	+	asmbl_14053	none	STRG.18130.2,Trinity_GG_9950_c0_g1_i1,blat.proc3829879.chain_2769	3	STRG.18130.1	1
scaffold_19	starts_in_intron	6238231	6238231	-	asmbl_21407	none	blat.proc3829897.chain_2829	1	STRG.22152.1,blat.proc3829897.chain_2828	2
scaffold_9	alternate_exon	4827640	4827675	+	asmbl_53938	none	STRG.11047.2,Trinity_GG_6111_c0_g1_i2,blat.proc3829875.chain_3454	3	STRG.11047.1,blat.proc3829875.chain_3455	2
scaffold_21	starts_in_intron	3827247	3827247	-	asmbl_27578	none	blat.proc3829899.chain_1043	1	STRG.23959.1,STRG.23959.2,STRG.23959.3,STRG.23959.4,blat.proc3829899.chain_1041,blat.proc3829899.chain_1042,blat.proc3829899.chain_1044,blat.proc3829899.chain_1045,blat.proc3829899.chain_1046	9
scaffold_26	ends_in_intron	4820278	4820278	+	asmbl_35455,asmbl_35457	none	STRG.28182.2,blat.proc3829885.chain_1147	2	STRG.28182.1,blat.proc3829885.chain_1144,blat.proc3829885.chain_1145,blat.proc3829885.chain_1146	4
scaffold_9	alternate_exon	16574383	16574478	-	asmbl_55552,asmbl_55553	none	STRG.11799.1,Trinity_GG_23525_c0_g1_i1,Trinity_GG_23525_c0_g1_i2,blat.proc3829893.chain_158,blat.proc3829893.chain_159	5	STRG.11799.2	1
scaffold_6	alt_acceptor	12520224	12520225	-	asmbl_48748,asmbl_48749,asmbl_48750,asmbl_48752,asmbl_48753	none	STRG.8002.1,STRG.8002.2,STRG.8002.4,blat.proc3829891.chain_300,blat.proc3829891.chain_301,blat.proc3829891.chain_302	6	STRG.8002.3	1
scaffold_27	alt_acceptor	9863272	9863273	+	asmbl_36485	none	STRG.29189.2,blat.proc3829885.chain_2327	2	STRG.29189.1,blat.proc3829885.chain_2328	2
scaffold_10	alt_acceptor	12143114	12143115	-	asmbl_3714	none	STRG.12837.1	1	STRG.12837.2	1
scaffold_6	starts_in_intron	16851435	16851435	-	asmbl_49096	none	blat.proc3829891.chain_617	1	STRG.8392.1,blat.proc3829891.chain_616	2
scaffold_27	starts_in_intron	4463711	4463711	-	asmbl_36911	none	blat.proc3829901.chain_2053	1	STRG.28880.1,blat.proc3829901.chain_2054	2
scaffold_12	starts_in_intron	10387227	10387227	-	asmbl_7881	none	Trinity_GG_25380_c0_g1_i3,blat.proc3829893.chain_3388	2	STRG.15000.1,STRG.15000.2,blat.proc3829893.chain_3389,blat.proc3829893.chain_3390	4
scaffold_2	alt_donor	3895330	3895331	-	asmbl_23042	none	STRG.1830.2,blat.proc3829887.chain_1653	2	STRG.1830.1,blat.proc3829887.chain_1654	2
scaffold_8	starts_in_intron	11624670	11624670	+	asmbl_52242	none	blat.proc3829875.chain_2877,blat.proc3829875.chain_2880	2	STRG.10363.1,blat.proc3829875.chain_2879	2
scaffold_2	ends_in_intron	10878938	10878938	+	asmbl_24775	none	blat.proc3829871.chain_2381	1	STRG.2242.1,Trinity_GG_1275_c0_g1_i6,blat.proc3829871.chain_2376,blat.proc3829871.chain_2377	4
scaffold_7	spliced_intron	12082375	12082549	+	asmbl_51096,asmbl_51100	none	STRG.9310.1,STRG.9310.3,Trinity_GG_5111_c0_g1_i1,blat.proc3829875.chain_1658	4	Trinity_GG_5111_c0_g1_i2,blat.proc3829875.chain_1656	2
scaffold_19	starts_in_intron	6485568	6485568	+	asmbl_22220	none	Trinity_GG_12230_c0_g1_i3,blat.proc3829881.chain_3074	2	STRG.22167.1	1
scaffold_1	skipped_exon	13883303	13885119	-	asmbl_860	none	STRG.993.1,blat.proc3829887.chain_867	2	STRG.993.2,STRG.993.4,blat.proc3829887.chain_868	3
scaffold_6	alternate_exon	8581211	8581464	+	asmbl_47091	none	STRG.7732.4	1	STRG.7732.3,blat.proc3829875.chain_111,blat.proc3829875.chain_112	3
scaffold_21	alt_donor	3162003	3162004	+	asmbl_28479,asmbl_28487,asmbl_28492,asmbl_28493,asmbl_28494	none	STRG.23945.1,STRG.23945.4,STRG.23945.5,blat.proc3829883.chain_1050,blat.proc3829883.chain_1052,blat.proc3829883.chain_1055	6	STRG.23945.2,STRG.23945.3,blat.proc3829883.chain_1049,blat.proc3829883.chain_1051,blat.proc3829883.chain_1053,blat.proc3829883.chain_1054,blat.proc3829883.chain_1056	7
scaffold_12	ends_in_intron	4350085	4350085	+	asmbl_8564	none	STRG.14606.1	1	STRG.14606.2,blat.proc3829877.chain_3131	2
scaffold_4	alt_acceptor	12793661	12793662	+	asmbl_43083,asmbl_43084,asmbl_43085,asmbl_43086,asmbl_43089,asmbl_43090	none	STRG.4920.1,STRG.4920.2,STRG.4920.3,blat.proc3829873.chain_1273,blat.proc3829873.chain_1274,blat.proc3829873.chain_1275,blat.proc3829873.chain_1276	7	STRG.4920.4,Trinity_GG_2752_c0_g1_i6,blat.proc3829873.chain_1271	3
scaffold_9	retained_intron	637042	637113	+	asmbl_53758	none	STRG.10784.2,blat.proc3829875.chain_3282	2	STRG.10784.1	1
scaffold_20	retained_intron	10070223	10070662	-	asmbl_27002	none	STRG.23536.2,Trinity_GG_30137_c0_g1_i2,blat.proc3829899.chain_547	3	STRG.23536.1,Trinity_GG_30137_c0_g1_i1,Trinity_GG_30137_c0_g1_i4,blat.proc3829899.chain_548,blat.proc3829899.chain_549	5
scaffold_3	starts_in_intron	3752213	3752213	+	asmbl_39933	none	Trinity_GG_1753_c0_g1_i1,blat.proc3829871.chain_3261	2	STRG.3098.1,blat.proc3829871.chain_3262,blat.proc3829871.chain_3263	3
scaffold_5	alt_donor	15111899	15111900	-	asmbl_46027	none	STRG.6691.1,Trinity_GG_20764_c0_g1_i1,blat.proc3829889.chain_2732	3	STRG.6691.2,STRG.6691.3,Trinity_GG_20764_c0_g1_i3,blat.proc3829889.chain_2733	4
scaffold_1	alt_acceptor	4567861	4567862	-	asmbl_209	none	STRG.277.3	1	STRG.277.1,STRG.277.2,blat.proc3829887.chain_136	3
scaffold_20	alt_donor	9825875	9825876	-	asmbl_26985	none	blat.proc3829899.chain_529	1	STRG.23515.1,STRG.23515.2,blat.proc3829899.chain_527,blat.proc3829899.chain_528,blat.proc3829899.chain_530	5
scaffold_15	alt_donor	1504655	1504656	-	asmbl_14968	none	STRG.17945.2,blat.proc3829895.chain_2658	2	STRG.17945.1,blat.proc3829895.chain_2661,blat.proc3829895.chain_2662	3
scaffold_9	alternate_exon	3692606	3692696	+	asmbl_53896	none	STRG.10969.1	1	STRG.10969.2	1
scaffold_21	alt_acceptor	8970191	8970192	-	asmbl_27965,asmbl_27966	none	STRG.24397.1,STRG.24397.2,blat.proc3829899.chain_1463,blat.proc3829899.chain_1464	4	STRG.24397.3,blat.proc3829899.chain_1461,blat.proc3829899.chain_1462	3
scaffold_6	alternate_exon	12493114	12493763	+	asmbl_47347	none	STRG.8005.3,blat.proc3829875.chain_349	2	STRG.8005.1,STRG.8005.2,blat.proc3829875.chain_345,blat.proc3829875.chain_346,blat.proc3829875.chain_347	5
scaffold_8	spliced_intron	9104039	9104256	-	asmbl_52991	none	STRG.10156.1,blat.proc3829891.chain_2323	2	blat.proc3829891.chain_2324	1
scaffold_10	alt_acceptor	16475794	16475795	-	asmbl_3907	none	STRG.13105.1,blat.proc3829893.chain_1612	2	STRG.13105.3,STRG.13105.4	2
scaffold_3	spliced_intron	19407196	19407473	-	asmbl_39594,asmbl_39596	none	STRG.4084.1,blat.proc3829889.chain_155,blat.proc3829889.chain_157	3	blat.proc3829889.chain_156	1
scaffold_25	alt_acceptor	4469551	4469552	-	asmbl_34174	none	STRG.27360.1	1	STRG.27360.2	1
scaffold_18	alternate_exon	7866821	7866927	-	asmbl_20021	none	blat.proc3829897.chain_2330	1	STRG.21476.1,blat.proc3829897.chain_2331	2
scaffold_23	alternate_exon	5620237	5621741	-	asmbl_31644	none	Trinity_GG_31507_c0_g2_i3,blat.proc3829899.chain_3027	2	STRG.25917.1	1
scaffold_6	alt_donor	17670897	17670898	+	asmbl_47710,asmbl_47712	none	STRG.8454.1,Trinity_GG_4651_c0_g1_i2,Trinity_GG_4651_c0_g1_i5,blat.proc3829875.chain_847,blat.proc3829875.chain_850	5	STRG.8454.3,STRG.8454.4,blat.proc3829875.chain_846	3
scaffold_18	retained_intron	8865798	8865880	-	asmbl_20067,asmbl_20068	none	blat.proc3829897.chain_2357,blat.proc3829897.chain_2362	2	STRG.21541.1,STRG.21541.2,STRG.21541.3,blat.proc3829897.chain_2356,blat.proc3829897.chain_2358,blat.proc3829897.chain_2359,blat.proc3829897.chain_2360	7
scaffold_15	spliced_intron	4232365	4232536	+	asmbl_14070,asmbl_14071,asmbl_14072,asmbl_14074,asmbl_14075	none	STRG.18160.1,STRG.18160.2,blat.proc3829879.chain_2806,blat.proc3829879.chain_2808,blat.proc3829879.chain_2810,blat.proc3829879.chain_2811,blat.proc3829879.chain_2813	7	blat.proc3829879.chain_2809,blat.proc3829879.chain_2814	2
scaffold_2	spliced_intron	20429623	20429784	-	asmbl_23921	none	STRG.2882.1,blat.proc3829887.chain_2656	2	blat.proc3829887.chain_2655	1
scaffold_14	skipped_exon	14386356	14387535	+	asmbl_12532	none	STRG.17683.2	1	STRG.17683.1	1
scaffold_3	ends_in_intron	13460461	13460461	+	asmbl_40398	none	Trinity_GG_2039_c0_g1_i5,blat.proc3829873.chain_29	2	STRG.3701.1,blat.proc3829873.chain_31,blat.proc3829873.chain_32	3
scaffold_4	spliced_intron	11075139	11075573	+	asmbl_43032	none	STRG.4827.1,Trinity_GG_2673_c0_g1_i1,blat.proc3829873.chain_1145	3	STRG.4827.3,Trinity_GG_2673_c1_g1_i1,blat.proc3829873.chain_1146	3
scaffold_27	starts_in_intron	3019905	3019905	+	asmbl_36131	none	blat.proc3829885.chain_1779	1	STRG.28769.1,STRG.28769.2,blat.proc3829885.chain_1774,blat.proc3829885.chain_1780,blat.proc3829885.chain_1782	5
scaffold_21	starts_in_intron	7809760	7809760	-	asmbl_27873	none	blat.proc3829899.chain_1363	1	STRG.24304.1,STRG.24304.2,STRG.24304.3,blat.proc3829899.chain_1364,blat.proc3829899.chain_1365	5
scaffold_6	alt_acceptor	50366	50367	+	asmbl_46580	none	STRG.7052.2	1	STRG.7052.1,Trinity_GG_3881_c0_g1_i1,blat.proc3829873.chain_3196	3
scaffold_20	retained_intron	7473793	7473882	-	asmbl_26835	none	blat.proc3829899.chain_390	1	STRG.23308.1,blat.proc3829899.chain_389,blat.proc3829899.chain_391,blat.proc3829899.chain_393,blat.proc3829899.chain_394,blat.proc3829899.chain_396,blat.proc3829899.chain_399,blat.proc3829899.chain_401	8
scaffold_13	spliced_intron	518381	518487	+	asmbl_10458,asmbl_10460	none	STRG.15434.4,STRG.15434.5	2	STRG.15434.1,blat.proc3829879.chain_111,blat.proc3829879.chain_114	3
scaffold_10	spliced_intron	11911250	11911410	-	asmbl_3704,asmbl_3705	none	STRG.12817.1,blat.proc3829893.chain_1283,blat.proc3829893.chain_1285	3	STRG.12817.2,Trinity_GG_24166_c0_g1_i3,Trinity_GG_24166_c0_g1_i5,blat.proc3829893.chain_1282,blat.proc3829893.chain_1286	5
scaffold_1210	alt_donor	2571	2572	-	asmbl_9230	none	STRG.30539.2	1	STRG.30539.1	1
scaffold_9	retained_intron	11028497	11028576	-	asmbl_55234	none	STRG.11403.2	1	STRG.11403.1	1
scaffold_24	retained_intron	10605221	10605501	+	asmbl_32585	none	blat.proc3829885.chain_138	1	STRG.27008.1,STRG.27008.2,blat.proc3829885.chain_139,blat.proc3829885.chain_140,blat.proc3829885.chain_142	5
scaffold_26	spliced_intron	9420301	9420411	-	asmbl_35049	none	STRG.28476.1	1	Trinity_GG_32921_c0_g1_i1,blat.proc3829901.chain_1607	2
scaffold_14	alternate_exon	15105351	15115148	+	asmbl_12550	none	blat.proc3829879.chain_2411	1	Trinity_GG_9754_c0_g1_i8,blat.proc3829879.chain_2407	2
scaffold_3	retained_intron	14187141	14189176	-	asmbl_39279,asmbl_39280,asmbl_39282	none	STRG.3759.1,STRG.3759.3,STRG.3759.4,Trinity_GG_19089_c0_g1_i1,blat.proc3829887.chain_3545	5	STRG.3759.5	1
scaffold_28	ends_in_intron	5232901	5232901	-	asmbl_37594,asmbl_37595	none	blat.proc3829901.chain_2683,blat.proc3829901.chain_2684	2	STRG.29652.1,STRG.29652.2,blat.proc3829901.chain_2678,blat.proc3829901.chain_2680,blat.proc3829901.chain_2685,blat.proc3829901.chain_2687	6
scaffold_4	retained_exon	18557617	18557778	-	asmbl_42131,asmbl_42132,asmbl_42134	none	STRG.5457.1,STRG.5457.2,blat.proc3829889.chain_1543,blat.proc3829889.chain_1545	4	blat.proc3829889.chain_1544	1
scaffold_26	retained_intron	3651416	3651580	-	asmbl_34774	none	STRG.28029.1,blat.proc3829901.chain_1204	2	STRG.28029.2,blat.proc3829901.chain_1203	2
scaffold_26	spliced_intron	9316247	9316445	+	asmbl_35739,asmbl_35741,asmbl_35742,asmbl_35746	none	STRG.28479.1,STRG.28479.2,STRG.28479.3,blat.proc3829885.chain_1515,blat.proc3829885.chain_1519	5	blat.proc3829885.chain_1518,blat.proc3829885.chain_1520	2
scaffold_808	ends_in_intron	1824	1824	-	asmbl_53661	none	Trinity_GG_34089_c0_g1_i2,blat.proc3829901.chain_3490	2	STRG.30452.1,blat.proc3829901.chain_3489	2
scaffold_12	alt_acceptor	6420181	6420182	+	asmbl_8639,asmbl_8640,asmbl_8645	none	STRG.14730.1,blat.proc3829877.chain_3201,blat.proc3829877.chain_3203,blat.proc3829877.chain_3204,blat.proc3829877.chain_3205	5	STRG.14730.2,STRG.14730.3,STRG.14730.4	3
scaffold_26	ends_in_intron	9060295	9060295	-	asmbl_35033	none	Trinity_GG_32917_c0_g1_i1,blat.proc3829901.chain_1600	2	STRG.28454.1,blat.proc3829901.chain_1601	2
scaffold_2	alternate_exon	862960	863760	+	asmbl_24132,asmbl_24133	none	STRG.1560.1,STRG.1560.2,Trinity_GG_887_c1_g1_i1,blat.proc3829871.chain_1607,blat.proc3829871.chain_1609,blat.proc3829871.chain_1613	6	STRG.1560.3	1
scaffold_28	skipped_exon	9268494	9269691	+	asmbl_38472	none	STRG.29948.1,Trinity_GG_16535_c0_g1_i2,blat.proc3829885.chain_2951	3	STRG.29948.2	1
scaffold_8	alt_acceptor	18152310	18152311	+	asmbl_52530	none	STRG.10711.2	1	STRG.10711.1,Trinity_GG_5943_c0_g1_i1,blat.proc3829875.chain_3205	3
scaffold_11	retained_exon	3497358	3497549	+	asmbl_5400	none	STRG.13472.4	1	STRG.13472.3	1
scaffold_21	alt_acceptor	8278462	8278463	+	asmbl_28819,asmbl_28820,asmbl_28822	none	STRG.24353.1,STRG.24353.2,STRG.24353.4	3	STRG.24353.3,blat.proc3829883.chain_1472	2
scaffold_22	spliced_intron	900648	900742	+	asmbl_29193	none	Trinity_GG_13671_c0_g1_i2,blat.proc3829883.chain_1780	2	Trinity_GG_13671_c0_g1_i3,blat.proc3829883.chain_1779	2
scaffold_20	retained_intron	8292472	8293196	+	asmbl_25914,asmbl_25918	none	STRG.23362.1,STRG.23362.4,Trinity_GG_12893_c0_g1_i4,blat.proc3829883.chain_460	4	STRG.23362.2,STRG.23362.3,Trinity_GG_12893_c0_g1_i2,Trinity_GG_12893_c0_g1_i3,blat.proc3829883.chain_458,blat.proc3829883.chain_459,blat.proc3829883.chain_461	7
scaffold_2	alt_acceptor	19773020	19773021	+	asmbl_25318,asmbl_25319,asmbl_25320	none	STRG.2825.1,blat.proc3829871.chain_2983,blat.proc3829871.chain_2984,blat.proc3829871.chain_2985	4	STRG.2825.2	1
scaffold_15	spliced_intron	9819517	9819607	+	asmbl_14358,asmbl_14361,asmbl_14364,asmbl_14365	none	STRG.18487.1,blat.proc3829879.chain_3042,blat.proc3829879.chain_3044,blat.proc3829879.chain_3045,blat.proc3829879.chain_3046	5	STRG.18487.2,blat.proc3829879.chain_3047	2
scaffold_12	retained_exon	7958741	7958822	+	asmbl_8762	none	STRG.14845.1,blat.proc3829877.chain_3276	2	STRG.14845.2,STRG.14845.3,blat.proc3829877.chain_3277	3
scaffold_26	starts_in_intron	223839	223839	-	asmbl_34658	none	Trinity_GG_32616_c0_g1_i2,blat.proc3829901.chain_1112	2	STRG.27832.1,Trinity_GG_32616_c0_g1_i3,blat.proc3829901.chain_1113	3
scaffold_23	retained_intron	2647054	2647286	+	asmbl_30720	none	blat.proc3829883.chain_2634	1	STRG.25713.1,blat.proc3829883.chain_2635	2
scaffold_16	starts_in_intron	6100648	6100648	-	asmbl_16314	none	blat.proc3829897.chain_384	1	STRG.19329.1,blat.proc3829897.chain_379,blat.proc3829897.chain_380,blat.proc3829897.chain_382	4
scaffold_4	alt_acceptor	14632367	14632368	-	asmbl_41803	none	STRG.5090.1,blat.proc3829889.chain_1115	2	STRG.5090.2	1
scaffold_4	spliced_intron	5651946	5652054	-	asmbl_41352,asmbl_41354,asmbl_41357,asmbl_41359,asmbl_41362,asmbl_41363,asmbl_41365,asmbl_41366,asmbl_41368,asmbl_41369	none	STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_605,blat.proc3829889.chain_606,blat.proc3829889.chain_608,blat.proc3829889.chain_611,blat.proc3829889.chain_612,blat.proc3829889.chain_613	10	STRG.4469.1,Trinity_GG_19533_c0_g1_i2,blat.proc3829889.chain_602,blat.proc3829889.chain_607,blat.proc3829889.chain_610	5
scaffold_12	skipped_exon	6417045	6417345	+	asmbl_8643,asmbl_8645	none	STRG.14730.4,blat.proc3829877.chain_3201	2	STRG.14730.1,STRG.14730.2,STRG.14730.3,blat.proc3829877.chain_3203,blat.proc3829877.chain_3204,blat.proc3829877.chain_3205	6
scaffold_22	starts_in_intron	4567265	4567265	+	asmbl_29316	none	blat.proc3829883.chain_1907	1	STRG.24870.1,STRG.24870.2,blat.proc3829883.chain_1903,blat.proc3829883.chain_1904,blat.proc3829883.chain_1908	5
scaffold_19	skipped_exon	12107159	12107555	-	asmbl_21674	none	STRG.22526.3	1	STRG.22526.1,STRG.22526.4,blat.proc3829897.chain_3209,blat.proc3829897.chain_3211	4
scaffold_2	alt_acceptor	11474984	11474985	-	asmbl_23468	none	STRG.2265.3,Trinity_GG_18293_c0_g1_i2,blat.proc3829887.chain_2172	3	STRG.2265.1,STRG.2265.2,Trinity_GG_18293_c0_g1_i1,Trinity_GG_18293_c0_g1_i3,blat.proc3829887.chain_2173,blat.proc3829887.chain_2174	6
scaffold_23	starts_in_intron	8001011	8001011	+	asmbl_31047	none	Trinity_GG_14413_c0_g1_i3	1	STRG.26092.1,STRG.26092.2	2
scaffold_15	spliced_intron	2730568	2730589	-	asmbl_15045	none	blat.proc3829895.chain_2720,blat.proc3829895.chain_2721	2	STRG.18046.1,Trinity_GG_27127_c0_g1_i1,Trinity_GG_27127_c0_g1_i2	3
scaffold_18	starts_in_intron	4573079	4573079	+	asmbl_20557,asmbl_20558	none	blat.proc3829881.chain_2155	1	STRG.21237.1,STRG.21237.2,blat.proc3829881.chain_2151,blat.proc3829881.chain_2152,blat.proc3829881.chain_2153,blat.proc3829881.chain_2154	6
scaffold_27	alt_donor	1109223	1109224	+	asmbl_35956	none	STRG.28591.1,Trinity_GG_15836_c0_g1_i1,blat.proc3829885.chain_1650	3	STRG.28591.2	1
scaffold_6	retained_intron	9585597	9585676	+	asmbl_47167	none	Trinity_GG_4292_c0_g2_i1,blat.proc3829875.chain_207	2	STRG.7802.1,blat.proc3829875.chain_206	2
scaffold_21	alt_acceptor	3820504	3820505	-	asmbl_27572	none	STRG.23957.2	1	STRG.23957.1,blat.proc3829899.chain_1032	2
scaffold_10	spliced_intron	12053237	12053342	+	asmbl_4798	none	STRG.12829.1,Trinity_GG_7040_c0_g1_i2	2	STRG.12829.2,Trinity_GG_7040_c0_g1_i1,blat.proc3829877.chain_1340	3
scaffold_23	alternate_exon	2616745	2618169	-	asmbl_31470,asmbl_31476	none	STRG.25709.3,STRG.25709.5,blat.proc3829899.chain_2846	3	STRG.25709.6	1
scaffold_12	alt_acceptor	15678891	15678892	-	asmbl_8231,asmbl_8236	none	STRG.15344.4,STRG.15344.5,blat.proc3829895.chain_21	3	STRG.15344.1,STRG.15344.2,blat.proc3829895.chain_20,blat.proc3829895.chain_22	4
scaffold_20	spliced_intron	7104772	7104894	-	asmbl_26797	none	STRG.23268.3,blat.proc3829899.chain_226	2	STRG.23268.1,blat.proc3829899.chain_227	2
scaffold_8	alt_donor	17764333	17764334	+	asmbl_52489	none	STRG.10683.1,Trinity_GG_5903_c0_g1_i2,blat.proc3829875.chain_3115	3	STRG.10683.2	1
scaffold_24	alternate_exon	2960830	2961014	-	asmbl_32797	none	STRG.26485.2	1	STRG.26485.1,blat.proc3829899.chain_3493,blat.proc3829899.chain_3494,blat.proc3829899.chain_3495	4
scaffold_8	retained_intron	16499327	16499685	-	asmbl_53420,asmbl_53421,asmbl_53423,asmbl_53425,asmbl_53427,asmbl_53429	none	STRG.10621.3,STRG.10621.4,blat.proc3829891.chain_2859,blat.proc3829891.chain_2862,blat.proc3829891.chain_2865,blat.proc3829891.chain_2871	6	STRG.10621.2,Trinity_GG_22960_c0_g1_i19,Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i27,blat.proc3829891.chain_2855,blat.proc3829891.chain_2863,blat.proc3829891.chain_2869,blat.proc3829891.chain_2872	8
scaffold_10	alt_acceptor	6076482	6076483	-	asmbl_3349	none	blat.proc3829893.chain_919	1	STRG.12437.1	1
scaffold_18	alt_donor	347719	347720	+	asmbl_20318,asmbl_20319	none	STRG.20974.1,STRG.20974.2,blat.proc3829881.chain_1825,blat.proc3829881.chain_1827	4	blat.proc3829881.chain_1826	1
scaffold_7	alternate_exon	17731667	17735486	+	asmbl_51375,asmbl_51377	none	STRG.9609.1,blat.proc3829875.chain_2072,blat.proc3829875.chain_2074	3	STRG.9609.2	1
scaffold_500	retained_exon	1450	1483	+	asmbl_46452	none	blat.proc3829885.chain_3365	1	STRG.30347.1,STRG.30347.2,STRG.30347.3,STRG.30347.4,blat.proc3829885.chain_3366,blat.proc3829885.chain_3369	6
scaffold_6	retained_intron	1498115	1498676	+	asmbl_46663	none	STRG.7184.1,Trinity_GG_3973_c1_g1_i2,blat.proc3829873.chain_3355	3	STRG.7184.3	1
scaffold_18	spliced_intron	8862547	8863588	-	asmbl_20061,asmbl_20065	none	STRG.21541.2,blat.proc3829897.chain_2356,blat.proc3829897.chain_2358	3	STRG.21541.1,STRG.21541.3,Trinity_GG_29045_c0_g1_i9,blat.proc3829897.chain_2355,blat.proc3829897.chain_2359,blat.proc3829897.chain_2360,blat.proc3829897.chain_2362	7
scaffold_19	starts_in_intron	13849	13849	-	asmbl_21183	none	blat.proc3829897.chain_2581	1	STRG.21808.1,blat.proc3829897.chain_2582	2
scaffold_15	alternate_exon	3401570	3401677	-	asmbl_15105,asmbl_15108	none	STRG.18107.1,STRG.18107.4,blat.proc3829895.chain_2867	3	blat.proc3829895.chain_2869	1
scaffold_1	spliced_intron	13538442	13538687	-	asmbl_825,asmbl_826	none	STRG.966.1,Trinity_GG_17468_c0_g1_i1,Trinity_GG_17468_c0_g1_i5,blat.proc3829887.chain_773,blat.proc3829887.chain_774	5	blat.proc3829887.chain_771	1
scaffold_8	retained_intron	11846516	11848424	+	asmbl_52269,asmbl_52274,asmbl_52276,asmbl_52277,asmbl_52278,asmbl_52279,asmbl_52280,asmbl_52281,asmbl_52283,asmbl_52284	none	STRG.10382.2,STRG.10382.3,blat.proc3829875.chain_2967,blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2976,blat.proc3829875.chain_2978,blat.proc3829875.chain_2979	11	blat.proc3829875.chain_2975,blat.proc3829875.chain_2977	2
scaffold_6	alt_donor	9987206	9987207	-	asmbl_48577,asmbl_48580	none	STRG.7831.1,blat.proc3829891.chain_86,blat.proc3829891.chain_88	3	STRG.7831.3,blat.proc3829891.chain_87	2
scaffold_4	retained_exon	5739522	5739541	-	asmbl_41376	none	STRG.4471.2	1	STRG.4471.1,blat.proc3829889.chain_584	2
scaffold_23	alt_acceptor	9424800	9424801	+	asmbl_31091	none	STRG.26145.3,Trinity_GG_14454_c1_g1_i1,blat.proc3829883.chain_3060	3	STRG.26145.1,STRG.26145.2,blat.proc3829883.chain_3059	3
scaffold_8	spliced_intron	7483397	7483530	-	asmbl_52903	none	STRG.10067.1,blat.proc3829891.chain_2151	2	blat.proc3829891.chain_2150	1
scaffold_24	alt_donor	3391854	3391855	-	asmbl_32814	none	STRG.26516.2	1	STRG.26516.1	1
scaffold_5	retained_intron	189945	189976	+	asmbl_43748,asmbl_43749,asmbl_43750	none	STRG.5581.1,STRG.5581.2,STRG.5581.4,Trinity_GG_3085_c4_g1_i2,Trinity_GG_3085_c4_g1_i4,Trinity_GG_3085_c4_g1_i6,blat.proc3829873.chain_1832	7	STRG.5581.3	1
scaffold_23	alt_donor	10938226	10938227	-	asmbl_31890,asmbl_31891	none	STRG.26279.3,blat.proc3829899.chain_3332,blat.proc3829899.chain_3333	3	STRG.26279.1,STRG.26279.2	2
scaffold_6	alt_donor	12697720	12697721	-	asmbl_48780	none	STRG.8021.2,Trinity_GG_21571_c0_g1_i3,blat.proc3829891.chain_315	3	STRG.8021.1,Trinity_GG_21571_c0_g1_i1,blat.proc3829891.chain_314	3
scaffold_12	alternate_exon	7507621	7510381	-	asmbl_7719	none	STRG.14818.1,Trinity_GG_25281_c2_g1_i2,blat.proc3829893.chain_3225	3	STRG.14818.2	1
scaffold_11	retained_intron	4744010	4744101	-	asmbl_6602	none	blat.proc3829893.chain_2040	1	STRG.13555.1,STRG.13555.2,blat.proc3829893.chain_2035,blat.proc3829893.chain_2037,blat.proc3829893.chain_2039	5
scaffold_19	starts_in_intron	10637344	10637344	-	asmbl_21559	none	STRG.22400.2	1	STRG.22400.1,blat.proc3829897.chain_3046	2
scaffold_5	retained_intron	6933179	6933389	+	asmbl_44128	none	blat.proc3829873.chain_2154	1	STRG.6099.1,blat.proc3829873.chain_2156	2
scaffold_13	starts_in_intron	6115353	6115353	+	asmbl_10897	none	Trinity_GG_8746_c0_g1_i2,blat.proc3829879.chain_605	2	STRG.15905.1,STRG.15905.2,blat.proc3829879.chain_603,blat.proc3829879.chain_604	4
scaffold_23	ends_in_intron	2616598	2616598	-	asmbl_31477	none	blat.proc3829899.chain_2847	1	STRG.25709.1,STRG.25709.2,STRG.25709.3,STRG.25709.5,blat.proc3829899.chain_2843,blat.proc3829899.chain_2844,blat.proc3829899.chain_2845,blat.proc3829899.chain_2846	8
scaffold_14	alt_acceptor	15944304	15944305	+	asmbl_12632	none	STRG.17823.2	1	STRG.17823.1	1
scaffold_9	ends_in_intron	5532320	5532320	+	asmbl_54040	none	STRG.11121.2	1	STRG.11121.1,STRG.11121.3,STRG.11121.4,Trinity_GG_6215_c0_g1_i5,blat.proc3829875.chain_3647	5
scaffold_2	alt_donor	5391988	5391989	-	asmbl_23173	none	STRG.1948.1,blat.proc3829887.chain_1757	2	STRG.1948.2	1
scaffold_7	spliced_intron	18790534	18791094	+	asmbl_51425	none	STRG.9691.4	1	STRG.9691.1,STRG.9691.2,STRG.9691.3,STRG.9691.5,blat.proc3829875.chain_2056	5
scaffold_12	retained_exon	3216288	3216509	-	asmbl_7484	none	STRG.14540.2,blat.proc3829893.chain_2911	2	STRG.14540.1,blat.proc3829893.chain_2913	2
scaffold_13	retained_intron	6619004	6619115	-	asmbl_9767	none	Trinity_GG_25988_c0_g1_i2,blat.proc3829895.chain_727	2	STRG.15949.2,Trinity_GG_25988_c0_g1_i3,blat.proc3829895.chain_728	3
scaffold_13	alt_acceptor	2334861	2334862	+	asmbl_10569	none	STRG.15543.2,blat.proc3829879.chain_174	2	STRG.15543.4,STRG.15543.8,STRG.15543.9,blat.proc3829879.chain_175	4
scaffold_18	starts_in_intron	6245141	6245141	-	asmbl_19929	none	blat.proc3829897.chain_2217	1	STRG.21344.1,blat.proc3829897.chain_2216	2
scaffold_25	spliced_intron	7903393	7903604	+	asmbl_33685	none	STRG.27597.2,blat.proc3829885.chain_573	2	STRG.27597.1,Trinity_GG_15189_c0_g1_i1,blat.proc3829885.chain_574	3
scaffold_9	starts_in_intron	9537506	9537506	-	asmbl_55159	none	blat.proc3829891.chain_3452	1	blat.proc3829891.chain_3453	1
scaffold_11	retained_intron	9829790	9830568	+	asmbl_5866,asmbl_5867,asmbl_5874,asmbl_5875	none	STRG.13996.1,STRG.13996.3,Trinity_GG_7729_c0_g1_i9,blat.proc3829877.chain_2511,blat.proc3829877.chain_2513,blat.proc3829877.chain_2514	6	STRG.13996.4,blat.proc3829877.chain_2506	2
scaffold_7	alternate_exon	11152460	11152604	+	asmbl_51037	none	STRG.9249.3,Trinity_GG_5128_c0_g1_i2,blat.proc3829875.chain_1687	3	STRG.9249.1,Trinity_GG_5128_c0_g1_i1,blat.proc3829875.chain_1688	3
scaffold_8	spliced_intron	6309864	6309987	+	asmbl_51945,asmbl_51946	none	STRG.10028.1,Trinity_GG_5540_c0_g2_i1,blat.proc3829875.chain_2465	3	blat.proc3829875.chain_2464	1
scaffold_2	ends_in_intron	10872867	10872867	+	asmbl_24779	none	blat.proc3829871.chain_2375	1	STRG.2242.1,STRG.2242.2,blat.proc3829871.chain_2373,blat.proc3829871.chain_2377	4
scaffold_7	alt_donor	2589211	2589212	+	asmbl_50537	none	STRG.8685.2	1	blat.proc3829875.chain_1113	1
scaffold_24	starts_in_intron	2065526	2065526	-	asmbl_32760	none	STRG.26415.2,Trinity_GG_31773_c0_g1_i3,blat.proc3829899.chain_3478	3	STRG.26415.1	1
scaffold_12	spliced_intron	16721517	16721700	-	asmbl_8277	none	STRG.15396.1,blat.proc3829895.chain_109	2	Trinity_GG_25636_c0_g1_i1,blat.proc3829895.chain_108	2
scaffold_2	alt_acceptor	4900235	4900236	-	asmbl_23138	none	STRG.1910.1,blat.proc3829887.chain_1782	2	STRG.1910.2	1
scaffold_25	alternate_exon	641086	641216	+	asmbl_33335	none	STRG.27098.1,Trinity_GG_14970_c1_g1_i1,blat.proc3829885.chain_213	3	STRG.27098.2	1
scaffold_16	alternate_exon	14542299	14546279	-	asmbl_16640	none	STRG.19822.1,Trinity_GG_28106_c0_g1_i1,blat.proc3829897.chain_788,blat.proc3829897.chain_789,blat.proc3829897.chain_790,blat.proc3829897.chain_791	6	STRG.19822.2	1
scaffold_13	retained_exon	1378408	1378452	-	asmbl_9367,asmbl_9369	none	blat.proc3829895.chain_207,blat.proc3829895.chain_210	2	STRG.15491.1,STRG.15491.2,blat.proc3829895.chain_208,blat.proc3829895.chain_209	4
scaffold_11	alternate_exon	14177993	14178113	-	asmbl_7136	none	STRG.14227.2,blat.proc3829893.chain_2618	2	STRG.14227.1,blat.proc3829893.chain_2617	2
scaffold_28	ends_in_intron	4207613	4207613	+	asmbl_38217	none	blat.proc3829885.chain_2723	1	STRG.29593.1,STRG.29593.4,STRG.29593.5,blat.proc3829885.chain_2724	4
scaffold_22	retained_intron	10089893	10089999	+	asmbl_29635	none	STRG.25343.1,Trinity_GG_13987_c0_g1_i1,blat.proc3829883.chain_2285	3	STRG.25343.2,Trinity_GG_13987_c0_g1_i2,blat.proc3829883.chain_2286	3
scaffold_21	alt_acceptor	8000621	8000622	-	asmbl_27900	none	STRG.24325.3,blat.proc3829899.chain_1427	2	STRG.24325.1,STRG.24325.2,blat.proc3829899.chain_1424,blat.proc3829899.chain_1426	4
scaffold_8	retained_intron	4851222	4851393	+	asmbl_51846,asmbl_51849	none	blat.proc3829875.chain_2455,blat.proc3829875.chain_2456	2	STRG.9942.1,STRG.9942.2,blat.proc3829875.chain_2454	3
scaffold_52	spliced_intron	6626	6929	+	asmbl_46477	none	STRG.30038.2,Trinity_GG_16629_c0_g1_i2,blat.proc3829885.chain_3100	3	STRG.30038.1,STRG.30038.3,Trinity_GG_16629_c0_g1_i3,Trinity_GG_16629_c0_g1_i4,Trinity_GG_16629_c0_g1_i5,blat.proc3829885.chain_3099,blat.proc3829885.chain_3101,blat.proc3829885.chain_3102	8
scaffold_14	alt_acceptor	12325791	12325792	-	asmbl_13550	none	STRG.17544.2	1	STRG.17544.1,blat.proc3829895.chain_2210,blat.proc3829895.chain_2211	3
scaffold_8	ends_in_intron	28136	28136	-	asmbl_52677	none	blat.proc3829891.chain_1952	1	STRG.9695.1,blat.proc3829891.chain_1953	2
scaffold_11	retained_intron	1286462	1286567	-	asmbl_6395	none	blat.proc3829893.chain_1751	1	STRG.13311.1,blat.proc3829893.chain_1749	2
scaffold_9	spliced_intron	11836844	11837012	-	asmbl_55289,asmbl_55292	none	STRG.11489.1,blat.proc3829891.chain_3602,blat.proc3829891.chain_3604	3	STRG.11489.2,STRG.11489.3,blat.proc3829891.chain_3600,blat.proc3829891.chain_3601,blat.proc3829891.chain_3603,blat.proc3829891.chain_3605	6
scaffold_14	skipped_exon	8215090	8216517	-	asmbl_13237,asmbl_13239,asmbl_13241	none	STRG.17218.2,Trinity_GG_26673_c0_g1_i5,blat.proc3829895.chain_1928,blat.proc3829895.chain_1929,blat.proc3829895.chain_1932	5	STRG.17218.3,blat.proc3829895.chain_1931	2
scaffold_1	retained_exon	6830890	6831526	-	asmbl_393	none	STRG.478.1,blat.proc3829887.chain_368	2	STRG.478.3	1
scaffold_26	spliced_intron	6351209	6351389	-	asmbl_34956	none	Trinity_GG_32794_c0_g1_i3,blat.proc3829901.chain_1405	2	STRG.28315.1	1
scaffold_5	retained_intron	9853379	9853480	-	asmbl_45686	none	STRG.6296.2,Trinity_GG_20560_c0_g1_i1,blat.proc3829889.chain_2381	3	STRG.6296.1	1
scaffold_3	retained_intron	7708984	7709075	-	asmbl_38934	none	blat.proc3829887.chain_3176	1	STRG.3361.1,blat.proc3829887.chain_3172,blat.proc3829887.chain_3175,blat.proc3829887.chain_3177	4
scaffold_2	retained_exon	7781545	7781620	+	asmbl_24612	none	blat.proc3829871.chain_2207	1	STRG.2076.1,STRG.2076.2,STRG.2076.4,blat.proc3829871.chain_2202,blat.proc3829871.chain_2203,blat.proc3829871.chain_2205,blat.proc3829871.chain_2208,blat.proc3829871.chain_2211,blat.proc3829871.chain_2213	9
scaffold_1	skipped_exon	43470	45446	-	asmbl_3	none	STRG.19.3	1	STRG.19.1,blat.proc3829885.chain_3732	2
scaffold_25	spliced_intron	3738082	3738200	-	asmbl_34134	none	STRG.27308.1,blat.proc3829901.chain_615	2	blat.proc3829901.chain_616	1
scaffold_14	spliced_intron	5161976	5162170	+	asmbl_11983	none	STRG.16998.1,blat.proc3829879.chain_1651,blat.proc3829879.chain_1652	3	STRG.16998.2	1
scaffold_7	ends_in_intron	13205152	13205152	+	asmbl_51196	none	blat.proc3829875.chain_1854	1	STRG.9419.1,STRG.9419.2,STRG.9419.3,blat.proc3829875.chain_1851,blat.proc3829875.chain_1853,blat.proc3829875.chain_1856	6
scaffold_18	skipped_exon	5984775	5987240	+	asmbl_20671,asmbl_20675	none	blat.proc3829881.chain_2206,blat.proc3829881.chain_2207,blat.proc3829881.chain_2208,blat.proc3829881.chain_2209	4	blat.proc3829881.chain_2205,blat.proc3829881.chain_2211,blat.proc3829881.chain_2212	3
scaffold_20	ends_in_intron	5949193	5949193	-	asmbl_26723	none	Trinity_GG_29917_c2_g1_i1,blat.proc3829899.chain_165	2	STRG.23191.1,blat.proc3829899.chain_160,blat.proc3829899.chain_161,blat.proc3829899.chain_163	4
scaffold_7	alt_acceptor	13960538	13960539	+	asmbl_51275,asmbl_51276	none	STRG.9485.2,STRG.9485.3,Trinity_GG_5272_c0_g1_i2,blat.proc3829875.chain_1952	4	STRG.9485.1,blat.proc3829875.chain_1953,blat.proc3829875.chain_1954,blat.proc3829875.chain_1955	4
scaffold_21	ends_in_intron	3143948	3143948	+	asmbl_28478	none	blat.proc3829883.chain_1094	1	STRG.23928.1,Trinity_GG_13265_c0_g1_i3,blat.proc3829883.chain_1095,blat.proc3829883.chain_1096	4
scaffold_10	spliced_intron	3927526	3928121	-	asmbl_3153,asmbl_3154,asmbl_3155,asmbl_3159	none	STRG.12230.1,STRG.12230.3,STRG.12230.4,blat.proc3829893.chain_691,blat.proc3829893.chain_693,blat.proc3829893.chain_694,blat.proc3829893.chain_695	7	STRG.12230.2	1
scaffold_10	spliced_intron	1076179	1076832	-	asmbl_2958	none	STRG.11988.3,Trinity_GG_23654_c0_g1_i3,blat.proc3829893.chain_386	3	STRG.11988.1,STRG.11988.2	2
scaffold_1	retained_exon	13884593	13884636	-	asmbl_863	none	STRG.993.4	1	STRG.993.1,STRG.993.5,blat.proc3829887.chain_867	3
scaffold_1	retained_intron	14320893	14321243	+	asmbl_2356,asmbl_2360	none	STRG.1024.2,blat.proc3829871.chain_1127,blat.proc3829871.chain_1128	3	STRG.1024.3,blat.proc3829871.chain_1126	2
scaffold_12	alt_acceptor	3100139	3100140	+	asmbl_8503	none	STRG.14537.1,blat.proc3829877.chain_3032	2	STRG.14537.2	1
scaffold_18	retained_intron	8726003	8726179	+	asmbl_20881,asmbl_20882,asmbl_20885	none	STRG.21533.3,STRG.21533.5,STRG.21533.6,Trinity_GG_11882_c0_g1_i2,blat.proc3829881.chain_2486,blat.proc3829881.chain_2487,blat.proc3829881.chain_2488	7	STRG.21533.2,STRG.21533.4,blat.proc3829881.chain_2484,blat.proc3829881.chain_2485	4
scaffold_19	alternate_exon	5345204	5345338	-	asmbl_21363	none	STRG.22090.4	1	STRG.22090.1,STRG.22090.2,STRG.22090.3,blat.proc3829897.chain_2876,blat.proc3829897.chain_2877	5
scaffold_1	starts_in_intron	18321262	18321262	+	asmbl_2534	none	blat.proc3829871.chain_1315	1	STRG.1288.1,STRG.1288.2,blat.proc3829871.chain_1316	3
scaffold_5	alt_acceptor	19054725	19054726	+	asmbl_44957	none	STRG.7009.1,Trinity_GG_3807_c0_g1_i1,blat.proc3829873.chain_3072	3	Trinity_GG_3807_c0_g1_i2,blat.proc3829873.chain_3071	2
scaffold_26	ends_in_intron	8446852	8446852	+	asmbl_35700	none	blat.proc3829885.chain_1448	1	STRG.28422.1,blat.proc3829885.chain_1449,blat.proc3829885.chain_1450,blat.proc3829885.chain_1451	4
scaffold_7	retained_intron	13205270	13205387	+	asmbl_51199	none	blat.proc3829875.chain_1855	1	STRG.9419.1,STRG.9419.2,STRG.9419.3,blat.proc3829875.chain_1851,blat.proc3829875.chain_1853,blat.proc3829875.chain_1856	6
scaffold_14	alt_acceptor	8294618	8294619	-	asmbl_13265,asmbl_13267	none	STRG.17236.1,blat.proc3829895.chain_1940,blat.proc3829895.chain_1941	3	blat.proc3829895.chain_1939	1
scaffold_12	alt_acceptor	6526861	6526862	-	asmbl_7675	none	STRG.14739.2	1	STRG.14739.1,blat.proc3829893.chain_3130	2
scaffold_16	spliced_intron	145688	145807	+	asmbl_16789	none	STRG.18993.1,blat.proc3829879.chain_3608	2	STRG.18993.2	1
scaffold_6	starts_in_intron	10312103	10312103	-	asmbl_48621	none	blat.proc3829891.chain_151	1	blat.proc3829891.chain_150	1
scaffold_5	starts_in_intron	16624513	16624513	-	asmbl_46141	none	blat.proc3829889.chain_2868	1	STRG.6838.1,blat.proc3829889.chain_2869	2
scaffold_17	spliced_intron	8221394	8221539	+	asmbl_18084,asmbl_18085,asmbl_18087	none	STRG.20435.3,blat.proc3829881.chain_1199,blat.proc3829881.chain_1203	3	STRG.20435.4	1
scaffold_4	starts_in_intron	17019494	17019494	-	asmbl_41993	none	blat.proc3829889.chain_1373	1	STRG.5297.1,blat.proc3829889.chain_1372	2
scaffold_14	spliced_intron	1714923	1715056	-	asmbl_12890	none	STRG.16794.1,Trinity_GG_26421_c0_g1_i3,blat.proc3829895.chain_1503	3	Trinity_GG_26421_c0_g1_i1,blat.proc3829895.chain_1502	2
scaffold_19	skipped_exon	13233310	13234904	-	asmbl_21826	none	STRG.22682.3,blat.proc3829897.chain_3357	2	STRG.22682.1,blat.proc3829897.chain_3356	2
scaffold_6	ends_in_intron	12654223	12654223	+	asmbl_47365	none	Trinity_GG_4365_c0_g1_i3,blat.proc3829875.chain_368	2	STRG.8019.1,blat.proc3829875.chain_365,blat.proc3829875.chain_366	3
scaffold_1	alt_acceptor	6299655	6299656	-	asmbl_355	none	blat.proc3829887.chain_303	1	STRG.424.4	1
scaffold_7	retained_exon	13960459	13960664	+	asmbl_51274	none	STRG.9485.1,Trinity_GG_5272_c0_g1_i1,blat.proc3829875.chain_1951,blat.proc3829875.chain_1955	4	blat.proc3829875.chain_1953	1
scaffold_8	starts_in_intron	9373233	9373233	-	asmbl_53025	none	blat.proc3829891.chain_2357	1	STRG.10194.3,STRG.10194.4,STRG.10194.5,STRG.10194.6,blat.proc3829891.chain_2355,blat.proc3829891.chain_2356,blat.proc3829891.chain_2358	7
scaffold_15	alt_donor	15413602	15413603	+	asmbl_14727,asmbl_14728	none	STRG.18922.1,blat.proc3829879.chain_3555	2	blat.proc3829879.chain_3550	1
scaffold_22	starts_in_intron	4367196	4367196	+	asmbl_29291	none	Trinity_GG_13726_c0_g1_i1,blat.proc3829883.chain_1859	2	STRG.24840.1,STRG.24840.2,Trinity_GG_13726_c0_g1_i2,blat.proc3829883.chain_1860	4
scaffold_17	alt_acceptor	9240530	9240531	+	asmbl_18197	none	STRG.20536.1,Trinity_GG_11257_c0_g1_i2,blat.proc3829881.chain_1365	3	STRG.20536.2,Trinity_GG_11257_c0_g1_i1,blat.proc3829881.chain_1364	3
scaffold_17	spliced_intron	3990087	3990195	-	asmbl_18881,asmbl_18882,asmbl_18883	none	STRG.20147.1,STRG.20147.2,Trinity_GG_28339_c0_g1_i7,blat.proc3829897.chain_1111,blat.proc3829897.chain_1115,blat.proc3829897.chain_1117	6	blat.proc3829897.chain_1116	1
scaffold_322	retained_intron	6499	6583	-	asmbl_40913	none	Trinity_GG_33980_c0_g1_i6,Trinity_GG_34090_c0_g1_i4,blat.proc3829901.chain_3329	3	STRG.30256.3	1
scaffold_13	retained_exon	7942303	7942323	-	asmbl_9879	none	STRG.16057.2,blat.proc3829895.chain_783	2	STRG.16057.1,blat.proc3829895.chain_784	2
scaffold_4	alternate_exon	17129029	17129377	-	asmbl_42008	none	Trinity_GG_19982_c0_g1_i2,blat.proc3829889.chain_1384	2	STRG.5313.2,Trinity_GG_19982_c0_g1_i3	2
scaffold_19	alt_acceptor	13143402	13143403	+	asmbl_22664	none	STRG.22622.1,blat.proc3829881.chain_3571	2	STRG.22622.2,Trinity_GG_12507_c0_g1_i1,blat.proc3829881.chain_3573	3
scaffold_6	alt_acceptor	10531377	10531378	+	asmbl_47223	none	blat.proc3829875.chain_270	1	STRG.7882.1	1
scaffold_2	retained_exon	8192753	8192867	+	asmbl_24652	none	STRG.2108.1,blat.proc3829871.chain_2099	2	STRG.2108.2,blat.proc3829871.chain_2098	2
scaffold_19	ends_in_intron	3668358	3668358	-	asmbl_21325,asmbl_21330	none	Trinity_GG_29269_c0_g1_i7,blat.proc3829897.chain_2740,blat.proc3829897.chain_2742	3	STRG.22034.1,STRG.22034.2,STRG.22034.3,Trinity_GG_29269_c0_g1_i1,Trinity_GG_29269_c0_g1_i2,Trinity_GG_29269_c0_g1_i5,Trinity_GG_29269_c0_g1_i6,blat.proc3829897.chain_2739,blat.proc3829897.chain_2743,blat.proc3829897.chain_2744,blat.proc3829897.chain_2745	11
scaffold_11	retained_intron	8398703	8399332	+	asmbl_5726,asmbl_5727,asmbl_5729	none	STRG.13845.2,Trinity_GG_7638_c0_g1_i6,blat.proc3829877.chain_2341,blat.proc3829877.chain_2342,blat.proc3829877.chain_2343,blat.proc3829877.chain_2346	6	blat.proc3829877.chain_2344	1
scaffold_11	retained_exon	3092703	3092987	+	asmbl_5360	none	STRG.13419.1	1	STRG.13419.2,blat.proc3829877.chain_1889	2
scaffold_10	alternate_exon	6012050	6017830	-	asmbl_3334,asmbl_3336	none	STRG.12424.2,blat.proc3829893.chain_893,blat.proc3829893.chain_895	3	blat.proc3829893.chain_894	1
scaffold_11	starts_in_intron	3767905	3767905	-	asmbl_6554	none	Trinity_GG_24570_c0_g1_i1	1	STRG.13488.1,STRG.13488.3,STRG.13488.4,blat.proc3829893.chain_1962	4
scaffold_7	retained_exon	8186754	8186825	+	asmbl_50847	none	STRG.9041.2,blat.proc3829875.chain_1473	2	STRG.9041.1,blat.proc3829875.chain_1474	2
scaffold_12	spliced_intron	12005072	12005349	-	asmbl_7976,asmbl_7978	none	STRG.15099.1,STRG.15099.2,Trinity_GG_25403_c0_g1_i3,blat.proc3829893.chain_3432,blat.proc3829893.chain_3434	5	STRG.15099.3,blat.proc3829893.chain_3433	2
scaffold_15	starts_in_intron	4563724	4563724	-	asmbl_15159	none	STRG.18170.1	1	STRG.18170.2	1
scaffold_11	retained_intron	9832014	9832313	+	asmbl_5873	none	blat.proc3829877.chain_2508	1	STRG.13996.1,STRG.13996.2,STRG.13996.3,STRG.13996.4,Trinity_GG_7729_c0_g1_i2,blat.proc3829877.chain_2505,blat.proc3829877.chain_2510,blat.proc3829877.chain_2512,blat.proc3829877.chain_2514	9
scaffold_24	spliced_intron	9119810	9119908	+	asmbl_32510	none	Trinity_GG_14906_c0_g1_i3,blat.proc3829885.chain_100	2	Trinity_GG_14906_c0_g1_i10,blat.proc3829885.chain_103	2
scaffold_9	retained_intron	11842283	11842383	-	asmbl_55298	none	blat.proc3829891.chain_3622	1	STRG.11491.1,blat.proc3829891.chain_3619,blat.proc3829891.chain_3620,blat.proc3829891.chain_3623,blat.proc3829891.chain_3624,blat.proc3829891.chain_3625,blat.proc3829891.chain_3626	7
scaffold_15	starts_in_intron	9015909	9015909	-	asmbl_15388	none	blat.proc3829895.chain_3209	1	STRG.18437.1,Trinity_GG_27378_c0_g1_i1,blat.proc3829895.chain_3210	3
scaffold_15	starts_in_intron	11875149	11875149	+	asmbl_14453	none	Trinity_GG_10224_c0_g1_i3,blat.proc3829879.chain_3219	2	STRG.18624.1,blat.proc3829879.chain_3220	2
scaffold_7	starts_in_intron	6977135	6977135	-	asmbl_49751	none	blat.proc3829891.chain_1257	1	STRG.8945.1,blat.proc3829891.chain_1258	2
scaffold_13	spliced_intron	4532541	4532619	+	asmbl_10792	none	STRG.15766.2,Trinity_GG_8662_c0_g1_i1,blat.proc3829879.chain_446	3	STRG.15766.1,Trinity_GG_8662_c0_g1_i2,blat.proc3829879.chain_447	3
scaffold_6	retained_intron	17883201	17883316	-	asmbl_49149	none	Trinity_GG_21830_c0_g2_i1,blat.proc3829891.chain_768	2	STRG.8474.1,STRG.8474.3,STRG.8474.4,Trinity_GG_21830_c0_g1_i2,Trinity_GG_21830_c0_g1_i3,blat.proc3829891.chain_764,blat.proc3829891.chain_767	7
scaffold_1	skipped_exon	18763492	18766130	+	asmbl_2557	none	STRG.1310.3	1	STRG.1310.2	1
scaffold_23	spliced_intron	5849629	5849725	-	asmbl_31669	none	STRG.25935.1,Trinity_GG_31533_c0_g1_i1,blat.proc3829899.chain_3068	3	STRG.25935.2,blat.proc3829899.chain_3069	2
scaffold_10	alt_donor	4715968	4715969	-	asmbl_3224	none	STRG.12286.2	1	STRG.12286.1,blat.proc3829893.chain_750	2
scaffold_28	spliced_intron	9441074	9441164	-	asmbl_37843	none	STRG.29952.1	1	blat.proc3829901.chain_3079	1
scaffold_23	alt_donor	2997655	2997656	-	asmbl_31492,asmbl_31494	none	STRG.25729.1,STRG.25729.4	2	STRG.25729.5	1
scaffold_11	ends_in_intron	10185613	10185613	+	asmbl_5889	none	blat.proc3829877.chain_2496	1	STRG.14019.2,STRG.14019.3,blat.proc3829877.chain_2497,blat.proc3829877.chain_2498	4
scaffold_27	retained_intron	129467	131958	-	asmbl_36589,asmbl_36590	none	STRG.28527.4,STRG.28527.5,blat.proc3829901.chain_1643,blat.proc3829901.chain_1646	4	STRG.28527.2,STRG.28527.3,blat.proc3829901.chain_1642,blat.proc3829901.chain_1644	4
scaffold_5	alt_donor	1097299	1097300	-	asmbl_45214	none	STRG.5657.1	1	STRG.5657.4	1
scaffold_9	spliced_intron	12580227	12580248	+	asmbl_54425	none	STRG.11564.2	1	Trinity_GG_6463_c0_g1_i1,blat.proc3829877.chain_346	2
scaffold_11	alternate_exon	36210	36395	-	asmbl_6340	none	STRG.13223.1,blat.proc3829893.chain_1683	2	STRG.13223.2,blat.proc3829893.chain_1684	2
scaffold_3	alt_donor	14217595	14217596	-	asmbl_39288	none	STRG.3755.1	1	STRG.3755.2	1
scaffold_22	retained_intron	6128541	6128687	+	asmbl_29388	none	STRG.24955.6,Trinity_GG_13800_c1_g2_i2,blat.proc3829883.chain_2004	3	STRG.24955.7	1
scaffold_3	starts_in_intron	6230937	6230937	-	asmbl_38880	none	blat.proc3829887.chain_2934	1	STRG.3276.1,STRG.3276.2,STRG.3276.3,STRG.3276.4,blat.proc3829887.chain_2933,blat.proc3829887.chain_2935,blat.proc3829887.chain_2936	7
scaffold_23	ends_in_intron	8206592	8206592	+	asmbl_31061	none	blat.proc3829883.chain_2941	1	STRG.26112.1,blat.proc3829883.chain_2936,blat.proc3829883.chain_2937	3
scaffold_17	alternate_exon	12369938	12370560	-	asmbl_19371	none	STRG.20776.4,Trinity_GG_28651_c0_g2_i1	2	STRG.20776.2,blat.proc3829897.chain_1640	2
scaffold_9	spliced_intron	9706825	9707265	+	asmbl_54216	none	STRG.11336.1,blat.proc3829877.chain_110	2	STRG.11336.3,Trinity_GG_6324_c1_g1_i12,blat.proc3829877.chain_113	3
scaffold_19	retained_exon	11780130	11780300	+	asmbl_22528	none	blat.proc3829881.chain_3448	1	STRG.22492.1,blat.proc3829881.chain_3449	2
scaffold_5	retained_intron	11993128	11993287	-	asmbl_45813	none	blat.proc3829889.chain_2520	1	STRG.6447.3,STRG.6447.4,STRG.6447.5,blat.proc3829889.chain_2519	4
scaffold_3	starts_in_intron	15573038	15573038	+	asmbl_40533,asmbl_40534	none	STRG.3845.4,blat.proc3829873.chain_217	2	STRG.3845.1,STRG.3845.3,blat.proc3829873.chain_216,blat.proc3829873.chain_218,blat.proc3829873.chain_219	5
scaffold_2	retained_intron	8055440	8055585	-	asmbl_23325	none	STRG.2095.5,blat.proc3829887.chain_2007	2	STRG.2095.1,blat.proc3829887.chain_2008	2
scaffold_27	spliced_intron	6742224	6742264	+	asmbl_36366	none	STRG.29031.1	1	Trinity_GG_16067_c0_g1_i1,blat.proc3829885.chain_2157,blat.proc3829885.chain_2158	3
scaffold_13	alt_acceptor	9244965	9244966	+	asmbl_11167,asmbl_11168	none	STRG.16173.1,STRG.16173.2,blat.proc3829879.chain_843,blat.proc3829879.chain_844	4	STRG.16173.3	1
scaffold_14	starts_in_intron	5910181	5910181	-	asmbl_13083	none	Trinity_GG_26560_c0_g1_i2,blat.proc3829895.chain_1717	2	blat.proc3829895.chain_1716	1
scaffold_14	skipped_exon	11664176	11665506	-	asmbl_13499	none	blat.proc3829895.chain_2184	1	STRG.17495.1,STRG.17495.2,blat.proc3829895.chain_2185,blat.proc3829895.chain_2186,blat.proc3829895.chain_2187	5
scaffold_10	starts_in_intron	3159106	3159106	+	asmbl_4309,asmbl_4310	none	STRG.12137.2,blat.proc3829877.chain_834,blat.proc3829877.chain_835	3	STRG.12137.1,blat.proc3829877.chain_833	2
scaffold_11	alt_donor	11627317	11627318	+	asmbl_5944	none	STRG.14074.2	1	STRG.14074.1,Trinity_GG_7769_c0_g1_i1,blat.proc3829877.chain_2581	3
scaffold_27	alt_acceptor	3025669	3025670	+	asmbl_36124,asmbl_36125,asmbl_36133	none	STRG.28769.1,STRG.28769.2,blat.proc3829885.chain_1782	3	blat.proc3829885.chain_1780	1
scaffold_11	alt_donor	7351148	7351149	+	asmbl_5633	none	STRG.13738.2	1	STRG.13738.1,Trinity_GG_7520_c0_g1_i1,blat.proc3829877.chain_2143	3
scaffold_25	alt_donor	3550708	3550709	-	asmbl_34117	none	STRG.27282.1,blat.proc3829901.chain_586	2	STRG.27282.2	1
scaffold_7	alternate_exon	5235112	5235518	+	asmbl_50686	none	blat.proc3829875.chain_1292	1	blat.proc3829875.chain_1294	1
scaffold_1555	retained_exon	333	478	-	asmbl_15980	none	STRG.30598.2	1	STRG.30598.1	1
scaffold_20	spliced_intron	11678784	11679395	-	asmbl_27107	none	STRG.23659.1,blat.proc3829899.chain_657	2	STRG.23659.2,blat.proc3829899.chain_656,blat.proc3829899.chain_659	3
scaffold_27	starts_in_intron	1986494	1986494	+	asmbl_36021	none	Trinity_GG_15865_c1_g1_i3,blat.proc3829885.chain_1703	2	STRG.28663.1,STRG.28663.2,blat.proc3829885.chain_1702,blat.proc3829885.chain_1704	4
scaffold_10	retained_intron	11968331	11968370	+	asmbl_4786	none	Trinity_GG_7032_c2_g1_i1,blat.proc3829877.chain_1325	2	STRG.12832.1	1
scaffold_2	retained_intron	18771819	18771850	+	asmbl_25282	none	STRG.2754.1	1	STRG.2754.2	1
scaffold_14	alt_acceptor	1069871	1069872	+	asmbl_11764,asmbl_11765,asmbl_11766,asmbl_11771,asmbl_11772	none	STRG.16754.3,STRG.16754.4,STRG.16754.5,blat.proc3829879.chain_1436,blat.proc3829879.chain_1441	5	STRG.16754.1,STRG.16754.2,blat.proc3829879.chain_1440,blat.proc3829879.chain_1442	4
scaffold_25	alternate_exon	3688250	3690269	+	asmbl_33449	none	blat.proc3829885.chain_327	1	STRG.27297.2	1
scaffold_7	spliced_intron	8326694	8326876	-	asmbl_49821	none	STRG.9060.2	1	Trinity_GG_22126_c0_g1_i8,blat.proc3829891.chain_1317	2
scaffold_16	alt_donor	3869732	3869733	-	asmbl_16178	none	STRG.19184.1,blat.proc3829897.chain_217	2	STRG.19184.2,blat.proc3829897.chain_216	2
scaffold_27	starts_in_intron	1552378	1552378	+	asmbl_35985	none	Trinity_GG_15852_c1_g1_i1,blat.proc3829885.chain_1674	2	STRG.28623.1,STRG.28623.2,STRG.28623.3,Trinity_GG_15852_c0_g1_i3,blat.proc3829885.chain_1669,blat.proc3829885.chain_1672,blat.proc3829885.chain_1673	7
scaffold_11	retained_exon	3763394	3763595	+	asmbl_5420	none	STRG.13487.1,STRG.13487.2,blat.proc3829877.chain_1919	3	STRG.13487.3	1
scaffold_1	skipped_exon	15306118	15306585	-	asmbl_960	none	STRG.1094.2	1	STRG.1094.1,blat.proc3829887.chain_994	2
scaffold_21	alternate_exon	7725836	7726193	+	asmbl_28782	none	STRG.24301.3	1	STRG.24301.2,blat.proc3829883.chain_1449	2
scaffold_3	alt_donor	12906245	12906246	-	asmbl_39190	none	STRG.3674.2,blat.proc3829887.chain_3451	2	STRG.3674.1,blat.proc3829887.chain_3452	2
scaffold_19	spliced_intron	8753361	8753725	+	asmbl_22353	none	blat.proc3829881.chain_3258	1	blat.proc3829881.chain_3259	1
scaffold_18	retained_intron	2835065	2835573	+	asmbl_20453	none	Trinity_GG_11580_c0_g1_i11,blat.proc3829881.chain_1919	2	STRG.21133.5	1
scaffold_23	starts_in_intron	10974737	10974737	+	asmbl_31184	none	STRG.26281.3	1	STRG.26281.1,STRG.26281.2,blat.proc3829883.chain_3195,blat.proc3829883.chain_3196,blat.proc3829883.chain_3198,blat.proc3829883.chain_3199,blat.proc3829883.chain_3200	7
scaffold_4	alt_donor	6948344	6948345	+	asmbl_42762,asmbl_42763,asmbl_42766,asmbl_42767,asmbl_42769,asmbl_42770,asmbl_42771	none	STRG.4536.1,STRG.4536.2,STRG.4536.3,Trinity_GG_2515_c0_g1_i7,blat.proc3829873.chain_899,blat.proc3829873.chain_901,blat.proc3829873.chain_902,blat.proc3829873.chain_903,blat.proc3829873.chain_905	9	Trinity_GG_2515_c0_g1_i3,blat.proc3829873.chain_900	2
scaffold_8	alt_donor	5977477	5977478	-	asmbl_52847	none	STRG.9999.2	1	STRG.9999.1,blat.proc3829891.chain_2178	2
scaffold_27	ends_in_intron	144848	144848	-	asmbl_36599	none	Trinity_GG_32960_c0_g1_i1,blat.proc3829901.chain_1700	2	STRG.28528.1,STRG.28528.2,Trinity_GG_32960_c0_g1_i2,blat.proc3829901.chain_1702	4
scaffold_7	skipped_exon	9836258	9836660	-	asmbl_49890,asmbl_49892	none	STRG.9171.4,blat.proc3829891.chain_1397,blat.proc3829891.chain_1399	3	STRG.9171.2,STRG.9171.3,blat.proc3829891.chain_1398	3
scaffold_17	ends_in_intron	6976812	6976812	-	asmbl_19056	none	blat.proc3829897.chain_1269	1	STRG.20347.1,STRG.20347.2,blat.proc3829897.chain_1268,blat.proc3829897.chain_1270	4
scaffold_3	skipped_exon	11658956	11660776	+	asmbl_40324,asmbl_40325,asmbl_40328	none	STRG.3612.2,STRG.3612.3,Trinity_GG_2013_c0_g1_i4,Trinity_GG_2013_c0_g1_i5,blat.proc3829871.chain_3734,blat.proc3829871.chain_3736,blat.proc3829871.chain_3738	7	STRG.3612.1,STRG.3612.4,Trinity_GG_2013_c0_g1_i1,blat.proc3829871.chain_3737	4
scaffold_20	spliced_intron	967146	967174	+	asmbl_25549	none	STRG.22792.2	1	STRG.22792.1	1
scaffold_28	starts_in_intron	1008947	1008947	-	asmbl_37281	none	STRG.29292.1	1	STRG.29292.2,blat.proc3829901.chain_2363,blat.proc3829901.chain_2364	3
scaffold_11	skipped_exon	8896235	8898169	-	asmbl_6867	none	STRG.13898.2	1	STRG.13898.1	1
scaffold_2	spliced_intron	15271520	15271659	+	asmbl_25032,asmbl_25035,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25043,asmbl_25044,asmbl_25045	none	STRG.2481.1,blat.proc3829871.chain_2524,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2536,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	10	blat.proc3829871.chain_2528,blat.proc3829871.chain_2535	2
scaffold_25	alt_donor	2089234	2089235	-	asmbl_34047	none	blat.proc3829901.chain_540	1	STRG.27196.2	1
scaffold_6	spliced_intron	7937253	7937838	-	asmbl_48453	none	STRG.7666.4	1	STRG.7666.1,blat.proc3829889.chain_3701,blat.proc3829889.chain_3702,blat.proc3829889.chain_3703,blat.proc3829889.chain_3705,blat.proc3829889.chain_3706	6
scaffold_23	spliced_intron	4449748	4450584	-	asmbl_31591	none	STRG.25842.2	1	STRG.25842.4,Trinity_GG_31473_c0_g1_i2,Trinity_GG_31473_c0_g1_i5,Trinity_GG_31473_c0_g1_i6,blat.proc3829899.chain_2967,blat.proc3829899.chain_2968,blat.proc3829899.chain_2969	7
scaffold_16	retained_exon	14544286	14544409	-	asmbl_16642	none	STRG.19822.2	1	STRG.19822.3	1
scaffold_18	alternate_exon	8727003	8728044	+	asmbl_20886	none	STRG.21533.4	1	blat.proc3829881.chain_2482	1
scaffold_5	alt_acceptor	12829480	12829481	-	asmbl_45867,asmbl_45868	none	STRG.6505.1,STRG.6505.2,blat.proc3829889.chain_2591,blat.proc3829889.chain_2592	4	STRG.6505.3	1
scaffold_15	alt_acceptor	11811892	11811893	-	asmbl_15552	none	STRG.18623.2	1	STRG.18623.1,blat.proc3829895.chain_3414	2
scaffold_8	alternate_exon	11109257	11109276	-	asmbl_53131	none	STRG.10313.1	1	STRG.10313.2,STRG.10313.3,blat.proc3829891.chain_2471,blat.proc3829891.chain_2472	4
scaffold_13	spliced_intron	8715359	8715468	-	asmbl_9929	none	STRG.16126.2,blat.proc3829895.chain_864	2	STRG.16126.1,blat.proc3829895.chain_863	2
scaffold_5	spliced_intron	1548461	1548523	-	asmbl_45251	none	STRG.5706.2	1	Trinity_GG_20236_c0_g1_i4,blat.proc3829889.chain_1822,blat.proc3829901.chain_3397,blat.proc3829901.chain_3398	4
scaffold_6	alt_donor	837950	837951	+	asmbl_46631	none	STRG.7136.1,Trinity_GG_3883_c0_g1_i1,blat.proc3829873.chain_3198	3	STRG.7136.2	1
scaffold_2	spliced_intron	15451380	15451457	+	asmbl_25063,asmbl_25064,asmbl_25065,asmbl_25067,asmbl_25068,asmbl_25069,asmbl_25070	none	STRG.2500.1,STRG.2500.2,blat.proc3829871.chain_2679,blat.proc3829871.chain_2680,blat.proc3829871.chain_2681,blat.proc3829871.chain_2683,blat.proc3829871.chain_2684,blat.proc3829871.chain_2685	8	blat.proc3829871.chain_2682	1
scaffold_14	starts_in_intron	12759927	12759927	-	asmbl_13581,asmbl_13582,asmbl_13588	none	STRG.17572.2,STRG.17572.3,blat.proc3829895.chain_2356,blat.proc3829895.chain_2359	4	STRG.17572.1,blat.proc3829895.chain_2360,blat.proc3829895.chain_2361,blat.proc3829895.chain_2363	4
scaffold_1	spliced_intron	1420788	1420966	-	asmbl_65	none	STRG.87.1,Trinity_GG_17059_c0_g1_i1,blat.proc3829885.chain_3745	3	Trinity_GG_17059_c0_g1_i2,blat.proc3829885.chain_3744	2
scaffold_16	starts_in_intron	6149074	6149074	+	asmbl_17071	none	Trinity_GG_10589_c0_g1_i7,blat.proc3829881.chain_213	2	STRG.19342.1,blat.proc3829881.chain_208,blat.proc3829881.chain_214	3
scaffold_24	alt_acceptor	6449087	6449088	+	asmbl_32317	none	STRG.26679.2,blat.proc3829883.chain_3599	2	STRG.26679.1,blat.proc3829883.chain_3602,blat.proc3829883.chain_3603	3
scaffold_3	alternate_exon	6036642	6050805	-	asmbl_38833,asmbl_38834,asmbl_38836	none	STRG.3255.1,STRG.3255.2,STRG.3255.5,blat.proc3829887.chain_2986	4	STRG.3255.3,Trinity_GG_18799_c2_g2_i1,blat.proc3829887.chain_3061	3
scaffold_11	alternate_exon	15830140	15833770	+	asmbl_6118	none	blat.proc3829877.chain_2735	1	STRG.14312.4	1
scaffold_1	spliced_intron	20742516	20742758	-	asmbl_1199	none	blat.proc3829887.chain_1304	1	blat.proc3829887.chain_1305	1
scaffold_13	ends_in_intron	13536441	13536441	-	asmbl_10113	none	Trinity_GG_26154_c1_g1_i1,blat.proc3829895.chain_1068	2	STRG.16392.2	1
scaffold_11	starts_in_intron	8478568	8478568	+	asmbl_5749	none	blat.proc3829877.chain_2361	1	STRG.13851.1,STRG.13851.2,Trinity_GG_7647_c0_g1_i2,Trinity_GG_7647_c0_g1_i3,Trinity_GG_7647_c0_g1_i5,blat.proc3829877.chain_2360,blat.proc3829877.chain_2362,blat.proc3829877.chain_2363	8
scaffold_13	starts_in_intron	8010743	8010743	+	asmbl_11074,asmbl_11077,asmbl_11078	none	Trinity_GG_8816_c0_g2_i5,blat.proc3829879.chain_761,blat.proc3829879.chain_762,blat.proc3829879.chain_763	4	STRG.16066.1,blat.proc3829879.chain_764	2
scaffold_3	retained_intron	10756336	10756429	+	asmbl_40247,asmbl_40248	none	STRG.3507.2,blat.proc3829871.chain_3669,blat.proc3829871.chain_3671	3	STRG.3507.1,blat.proc3829871.chain_3670	2
scaffold_15	retained_intron	11562810	11563294	-	asmbl_15539	none	blat.proc3829895.chain_3335	1	STRG.18612.1,blat.proc3829895.chain_3333,blat.proc3829895.chain_3334	3
scaffold_23	spliced_intron	6632661	6632755	+	asmbl_30928,asmbl_30930,asmbl_30931,asmbl_30932,asmbl_30933	none	STRG.25985.2,blat.proc3829883.chain_2813,blat.proc3829883.chain_2814,blat.proc3829883.chain_2815,blat.proc3829883.chain_2816,blat.proc3829883.chain_2817	6	STRG.25985.1,blat.proc3829883.chain_2811	2
scaffold_5	retained_intron	10969290	10969590	+	asmbl_44385,asmbl_44386	none	blat.proc3829873.chain_2527,blat.proc3829873.chain_2528	2	STRG.6366.1,STRG.6366.2,blat.proc3829873.chain_2526	3
scaffold_6	alt_acceptor	712256	712257	+	asmbl_46626	none	STRG.7122.2	1	STRG.7122.1	1
scaffold_21	starts_in_intron	1861020	1861020	-	asmbl_27452	none	blat.proc3829899.chain_880	1	STRG.23813.1,blat.proc3829899.chain_878,blat.proc3829899.chain_879	3
scaffold_4	retained_intron	13076283	13076428	+	asmbl_43110	none	blat.proc3829873.chain_1239	1	STRG.4945.1,STRG.4945.2,blat.proc3829873.chain_1237	3
scaffold_10	retained_intron	13471706	13472424	-	asmbl_3788,asmbl_3789	none	STRG.12931.1,STRG.12931.4,Trinity_GG_24242_c0_g1_i1,Trinity_GG_24242_c0_g2_i3,blat.proc3829893.chain_1415,blat.proc3829893.chain_1416	6	STRG.12931.2,blat.proc3829893.chain_1418,blat.proc3829893.chain_1419	3
scaffold_1	alt_acceptor	7697524	7697525	+	asmbl_1907	none	STRG.534.2,Trinity_GG_337_c0_g1_i1,blat.proc3829871.chain_591	3	STRG.534.1,Trinity_GG_337_c0_g1_i2,blat.proc3829871.chain_590	3
scaffold_4	alt_donor	13825390	13825391	-	asmbl_41759	none	STRG.5009.3	1	STRG.5009.1,STRG.5009.2,blat.proc3829889.chain_1059,blat.proc3829889.chain_1060	4
scaffold_5	spliced_intron	14569299	14569509	-	asmbl_45978,asmbl_45982	none	STRG.6648.1,STRG.6648.2,blat.proc3829889.chain_2698	3	blat.proc3829889.chain_2695	1
scaffold_2	spliced_intron	7218817	7218918	+	asmbl_24570,asmbl_24575,asmbl_24580,asmbl_24581,asmbl_24582	none	STRG.2054.1,STRG.2054.5,Trinity_GG_1174_c0_g1_i13,Trinity_GG_1174_c0_g1_i2,Trinity_GG_1174_c0_g1_i4,blat.proc3829871.chain_2145,blat.proc3829871.chain_2147,blat.proc3829871.chain_2150,blat.proc3829871.chain_2153	9	STRG.2054.6,Trinity_GG_1174_c0_g1_i12,blat.proc3829871.chain_2152	3
scaffold_9	retained_intron	11054396	11054475	+	asmbl_54317	none	STRG.11411.1,blat.proc3829877.chain_218	2	STRG.11411.2,blat.proc3829877.chain_217	2
scaffold_2	starts_in_intron	14361226	14361226	+	asmbl_24951	none	Trinity_GG_1377_c0_g1_i3,blat.proc3829871.chain_2607	2	STRG.2435.1,STRG.2435.2,blat.proc3829871.chain_2604,blat.proc3829871.chain_2605,blat.proc3829871.chain_2606	5
scaffold_60	retained_intron	15832	15983	-	asmbl_49398	none	blat.proc3829901.chain_3173	1	blat.proc3829901.chain_3171	1
scaffold_9	alternate_exon	3694228	3694318	+	asmbl_53897	none	STRG.10969.2	1	STRG.10969.1	1
scaffold_14	alt_acceptor	405491	405492	+	asmbl_11722,asmbl_11726,asmbl_11730	none	STRG.16722.3,STRG.16722.5,Trinity_GG_9219_c0_g1_i21,blat.proc3829879.chain_1468,blat.proc3829879.chain_1470	5	STRG.16722.1,STRG.16722.2,Trinity_GG_9219_c0_g1_i3,blat.proc3829879.chain_1467,blat.proc3829879.chain_1469,blat.proc3829879.chain_1474	6
scaffold_25	spliced_intron	8475662	8475908	+	asmbl_33731	none	STRG.27664.1,blat.proc3829885.chain_662	2	blat.proc3829885.chain_661	1
scaffold_13	alt_donor	5948404	5948405	-	asmbl_9716,asmbl_9717,asmbl_9720	none	STRG.15896.1,STRG.15896.2,blat.proc3829895.chain_637,blat.proc3829895.chain_638	4	STRG.15896.3,STRG.15896.4	2
scaffold_3	retained_intron	10946294	10946668	-	asmbl_39082,asmbl_39083	none	blat.proc3829887.chain_3311,blat.proc3829887.chain_3312	2	STRG.3536.1,STRG.3536.2,blat.proc3829887.chain_3310,blat.proc3829887.chain_3313	4
scaffold_19	retained_intron	11481997	11482175	-	asmbl_21618	none	Trinity_GG_29530_c0_g1_i2,blat.proc3829897.chain_3183	2	STRG.22477.1,STRG.22477.2,STRG.22477.3,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184,blat.proc3829897.chain_3185,blat.proc3829897.chain_3187,blat.proc3829897.chain_3192	8
scaffold_6	ends_in_intron	13574610	13574610	-	asmbl_48855	none	Trinity_GG_21620_c1_g1_i4,blat.proc3829891.chain_415	2	STRG.8093.2,STRG.8093.3,STRG.8093.4,Trinity_GG_21620_c1_g1_i1,blat.proc3829891.chain_414,blat.proc3829891.chain_416	6
scaffold_10	retained_exon	6018625	6018719	-	asmbl_3335	none	STRG.12424.1,blat.proc3829893.chain_896	2	STRG.12424.2,blat.proc3829893.chain_895	2
scaffold_7	retained_intron	15269933	15270764	+	asmbl_51317	none	STRG.9532.3	1	STRG.9532.1,STRG.9532.2,STRG.9532.4,STRG.9532.5,blat.proc3829875.chain_1981,blat.proc3829875.chain_1984,blat.proc3829875.chain_1985,blat.proc3829875.chain_1986,blat.proc3829875.chain_1987	9
scaffold_8	alt_acceptor	6161958	6161959	-	asmbl_52853,asmbl_52857,asmbl_52858,asmbl_52859,asmbl_52860	none	STRG.10012.1,Trinity_GG_22628_c0_g1_i1,blat.proc3829891.chain_2213,blat.proc3829891.chain_2214,blat.proc3829891.chain_2215,blat.proc3829891.chain_2217,blat.proc3829891.chain_2218	7	STRG.10012.3	1
scaffold_27	retained_intron	158035	158158	-	asmbl_36601	none	STRG.28533.2,Trinity_GG_32959_c0_g1_i3,blat.proc3829901.chain_1698	3	STRG.28533.1,STRG.28533.3,blat.proc3829901.chain_1699	3
scaffold_18	retained_exon	3916064	3916194	-	asmbl_19823	none	STRG.21192.3	1	STRG.21192.4	1
scaffold_27	starts_in_intron	5063067	5063067	-	asmbl_36940,asmbl_36942	none	STRG.28916.1,blat.proc3829901.chain_2088	2	STRG.28916.2,Trinity_GG_33207_c0_g1_i1,blat.proc3829901.chain_2089	3
scaffold_2	retained_intron	8059380	8059478	-	asmbl_23329	none	STRG.2094.1,Trinity_GG_18182_c0_g1_i1,blat.proc3829887.chain_1998	3	STRG.2094.3	1
scaffold_12	alt_acceptor	13110263	13110264	-	asmbl_8049	none	STRG.15185.1	1	STRG.15185.2,Trinity_GG_25499_c0_g1_i3,blat.proc3829893.chain_3594,blat.proc3829893.chain_3596	4
scaffold_13	alt_acceptor	3734630	3734631	+	asmbl_10710,asmbl_10711	none	Trinity_GG_8631_c0_g1_i4,Trinity_GG_8631_c0_g1_i6,blat.proc3829879.chain_395,blat.proc3829879.chain_396	4	STRG.15686.1,STRG.15686.2,blat.proc3829879.chain_389,blat.proc3829879.chain_393,blat.proc3829879.chain_394	5
scaffold_21	spliced_intron	1300424	1301225	-	asmbl_27430,asmbl_27434	none	STRG.23801.2,STRG.23801.4,Trinity_GG_30279_c0_g1_i3,blat.proc3829899.chain_877	4	STRG.23801.1,STRG.23801.3,Trinity_GG_30279_c0_g1_i1,Trinity_GG_30279_c0_g1_i2,blat.proc3829899.chain_875,blat.proc3829899.chain_876	6
scaffold_1	starts_in_intron	17647986	17647986	+	asmbl_2506	none	Trinity_GG_700_c0_g1_i1,blat.proc3829871.chain_1259	2	STRG.1229.1,Trinity_GG_700_c0_g1_i2,blat.proc3829871.chain_1260	3
scaffold_9	starts_in_intron	15384031	15384031	+	asmbl_54542	none	blat.proc3829877.chain_488	1	STRG.11728.1,STRG.11728.2,blat.proc3829877.chain_489,blat.proc3829877.chain_490,blat.proc3829877.chain_491,blat.proc3829877.chain_492,blat.proc3829877.chain_493	7
scaffold_7	spliced_intron	13960665	13960867	+	asmbl_51274,asmbl_51275	none	STRG.9485.1,STRG.9485.2,Trinity_GG_5272_c0_g1_i1,blat.proc3829875.chain_1951	4	STRG.9485.3,Trinity_GG_5272_c0_g1_i2,blat.proc3829875.chain_1952	3
scaffold_4	starts_in_intron	7027709	7027709	+	asmbl_42779	none	Trinity_GG_2514_c0_g1_i2,blat.proc3829873.chain_896	2	STRG.4535.1,STRG.4535.2,blat.proc3829873.chain_897	3
scaffold_28	alt_acceptor	7831986	7831987	-	asmbl_37749	none	STRG.29832.1,blat.proc3829901.chain_2956	2	STRG.29832.2,blat.proc3829901.chain_2955	2
scaffold_7	alt_donor	17313640	17313641	+	asmbl_51361,asmbl_51362	none	STRG.9596.1,STRG.9596.2,blat.proc3829875.chain_1972	3	STRG.9596.3	1
scaffold_11	starts_in_intron	7534433	7534433	-	asmbl_6751	none	STRG.13743.1	1	STRG.13743.2,Trinity_GG_24669_c0_g1_i1,blat.proc3829893.chain_2127	3
scaffold_1	ends_in_intron	14182153	14182153	+	asmbl_2319	none	STRG.1000.2	1	STRG.1000.1,blat.proc3829871.chain_1040,blat.proc3829871.chain_1041	3
scaffold_28	starts_in_intron	2930631	2930631	-	asmbl_37433	none	blat.proc3829901.chain_2591	1	STRG.29467.1,STRG.29467.2	2
scaffold_14	alt_acceptor	8610953	8610954	-	asmbl_13310	none	STRG.17280.1,blat.proc3829895.chain_1992	2	STRG.17280.2,blat.proc3829895.chain_1989	2
scaffold_9	alternate_exon	4204075	4204117	+	asmbl_53926	none	STRG.11013.1,blat.proc3829875.chain_3430	2	STRG.11013.2,STRG.11013.3	2
scaffold_6	alternate_exon	14621750	14621964	-	asmbl_48952	none	blat.proc3829891.chain_467	1	STRG.8218.5	1
scaffold_7	retained_exon	15247395	15247475	+	asmbl_51302	none	STRG.9529.3,blat.proc3829875.chain_2038	2	STRG.9529.1,blat.proc3829875.chain_2039,blat.proc3829875.chain_2040	3
scaffold_7	starts_in_intron	7787827	7787827	-	asmbl_49787	none	STRG.9018.1	1	blat.proc3829891.chain_1286	1
scaffold_21	spliced_intron	8129161	8129599	-	asmbl_27911,asmbl_27913	none	blat.proc3829899.chain_1382,blat.proc3829899.chain_1384	2	STRG.24334.1,Trinity_GG_30568_c0_g1_i8,blat.proc3829899.chain_1386	3
scaffold_22	ends_in_intron	7889092	7889092	+	asmbl_29521	none	blat.proc3829883.chain_2193	1	STRG.25121.1,Trinity_GG_13918_c0_g1_i1,blat.proc3829883.chain_2192	3
scaffold_2	alternate_exon	8874095	8874133	+	asmbl_24691,asmbl_24692	none	blat.proc3829871.chain_2259,blat.proc3829871.chain_2260	2	STRG.2139.1,STRG.2139.3,STRG.2139.4,blat.proc3829871.chain_2262	4
scaffold_20	alt_acceptor	5551048	5551049	-	asmbl_26692,asmbl_26693	none	STRG.23165.1,STRG.23165.2	2	STRG.23165.3,blat.proc3829899.chain_203,blat.proc3829899.chain_204,blat.proc3829899.chain_205,blat.proc3829899.chain_206	5
scaffold_10	starts_in_intron	5500719	5500719	+	asmbl_4457	none	Trinity_GG_6852_c0_g2_i1,blat.proc3829877.chain_1001	2	blat.proc3829877.chain_1000	1
scaffold_10	alternate_exon	9546856	9547360	+	asmbl_4675	none	STRG.12692.3,Trinity_GG_7015_c2_g1_i1,blat.proc3829877.chain_1288	3	STRG.12692.1,STRG.12692.2,blat.proc3829877.chain_1283	3
scaffold_16	spliced_intron	2172434	2173787	+	asmbl_16900	none	STRG.19105.1,blat.proc3829879.chain_3739	2	STRG.19105.2,Trinity_GG_10487_c0_g1_i8,blat.proc3829879.chain_3733,blat.proc3829879.chain_3735,blat.proc3829879.chain_3736	5
scaffold_11	alt_acceptor	5258829	5258830	+	asmbl_5519	none	STRG.13602.5	1	STRG.13602.1	1
scaffold_24	alternate_exon	10130802	10130845	+	asmbl_32544	none	STRG.26962.2,blat.proc3829885.chain_42	2	STRG.26962.4	1
scaffold_5	spliced_intron	16583212	16583590	-	asmbl_46138	none	STRG.6840.1	1	STRG.6840.2,blat.proc3829889.chain_2887,blat.proc3829889.chain_2890	3
scaffold_43	alt_donor	921	922	-	asmbl_43672,asmbl_43673,asmbl_43674	none	STRG.30025.1,STRG.30025.3,STRG.30025.5	3	STRG.30025.4	1
scaffold_26	ends_in_intron	5035987	5035987	+	asmbl_35474,asmbl_35483	none	STRG.28206.3,blat.proc3829885.chain_1161,blat.proc3829885.chain_1171	3	STRG.28206.1,STRG.28206.2,blat.proc3829885.chain_1157,blat.proc3829885.chain_1160,blat.proc3829885.chain_1162,blat.proc3829885.chain_1164,blat.proc3829885.chain_1165,blat.proc3829885.chain_1168	8
scaffold_9	alternate_exon	15278482	15278679	+	asmbl_54529	none	STRG.11713.1,Trinity_GG_6549_c0_g1_i2,blat.proc3829877.chain_481	3	STRG.11713.2,blat.proc3829877.chain_480	2
scaffold_16	ends_in_intron	5802574	5802574	+	asmbl_17023	none	Trinity_GG_10534_c0_g1_i1,blat.proc3829881.chain_97	2	STRG.19311.1,STRG.19311.3,Trinity_GG_10534_c0_g1_i2,Trinity_GG_10534_c0_g1_i4,blat.proc3829881.chain_94,blat.proc3829881.chain_95	6
scaffold_15	retained_intron	15414145	15414258	+	asmbl_14728,asmbl_14729,asmbl_14731,asmbl_14734	none	STRG.18922.1,STRG.18922.2,STRG.18922.4,blat.proc3829879.chain_3552,blat.proc3829879.chain_3556	5	STRG.18922.3,STRG.18922.5,blat.proc3829879.chain_3551,blat.proc3829879.chain_3553	4
scaffold_17	ends_in_intron	8831444	8831444	-	asmbl_19168	none	STRG.20484.3,blat.proc3829897.chain_1367	2	STRG.20484.2	1
scaffold_12	retained_exon	1340044	1340157	+	asmbl_8433,asmbl_8434	none	blat.proc3829877.chain_2923,blat.proc3829877.chain_2924	2	STRG.14451.2,blat.proc3829877.chain_2925	2
scaffold_2	spliced_intron	7241458	7241554	+	asmbl_24584,asmbl_24585,asmbl_24589,asmbl_24590	none	STRG.2061.1,blat.proc3829871.chain_2164,blat.proc3829871.chain_2169,blat.proc3829871.chain_2170,blat.proc3829871.chain_2171	5	blat.proc3829871.chain_2165,blat.proc3829871.chain_2166,blat.proc3829871.chain_2168	3
scaffold_16	retained_intron	145688	145807	+	asmbl_16790	none	STRG.18993.2	1	STRG.18993.1,blat.proc3829879.chain_3608	2
scaffold_322	spliced_intron	6499	6583	-	asmbl_40916	none	STRG.30256.3	1	Trinity_GG_33980_c0_g1_i6,Trinity_GG_34090_c0_g1_i4,blat.proc3829901.chain_3329	3
scaffold_2	retained_intron	276356	276443	-	asmbl_22821	none	Trinity_GG_17848_c0_g1_i1,blat.proc3829887.chain_1392	2	STRG.1516.1	1
scaffold_21	alt_donor	994309	994310	-	asmbl_27394	none	STRG.23770.1,Trinity_GG_30257_c0_g1_i2,Trinity_GG_30257_c0_g1_i3,blat.proc3829899.chain_844,blat.proc3829899.chain_845	5	STRG.23770.2	1
scaffold_5	spliced_intron	18758399	18758711	-	asmbl_46249	none	STRG.6996.1,blat.proc3829889.chain_2994	2	blat.proc3829889.chain_2995	1
scaffold_20	retained_intron	11744401	11744588	-	asmbl_27118	none	STRG.23678.2,Trinity_GG_30161_c0_g1_i2,blat.proc3829899.chain_600	3	STRG.23678.1,blat.proc3829899.chain_601	2
scaffold_11	spliced_intron	11641334	11641468	+	asmbl_5946,asmbl_5950	none	STRG.14080.1,blat.proc3829877.chain_2568,blat.proc3829877.chain_2572	3	blat.proc3829877.chain_2570,blat.proc3829877.chain_2573,blat.proc3829877.chain_2574	3
scaffold_26	starts_in_intron	9096633	9096633	+	asmbl_35732	none	STRG.28457.2,blat.proc3829885.chain_1444	2	STRG.28457.1,Trinity_GG_15720_c0_g1_i1,blat.proc3829885.chain_1443	3
scaffold_2	spliced_intron	7242608	7242683	+	asmbl_24584,asmbl_24588,asmbl_24589,asmbl_24591	none	STRG.2061.1,blat.proc3829871.chain_2168,blat.proc3829871.chain_2169,blat.proc3829871.chain_2170,blat.proc3829871.chain_2172	5	blat.proc3829871.chain_2164,blat.proc3829871.chain_2166,blat.proc3829871.chain_2171	3
scaffold_28	alt_donor	2317742	2317743	+	asmbl_38055,asmbl_38056	none	STRG.29386.2,blat.proc3829885.chain_2512	2	STRG.29386.1,blat.proc3829885.chain_2513	2
scaffold_12	alt_acceptor	16315433	16315434	-	asmbl_8256	none	STRG.15369.2,Trinity_GG_25639_c1_g1_i1,blat.proc3829895.chain_115	3	STRG.15369.1	1
scaffold_6	spliced_intron	7173679	7173782	+	asmbl_46988,asmbl_46989,asmbl_46990,asmbl_46991,asmbl_46992	none	STRG.7621.1,STRG.7621.2,STRG.7621.3,STRG.7621.4,blat.proc3829873.chain_3739	5	blat.proc3829873.chain_3736	1
scaffold_2	starts_in_intron	11200913	11200913	-	asmbl_23460	none	blat.proc3829887.chain_2178	1	STRG.2251.1,blat.proc3829887.chain_2176,blat.proc3829887.chain_2177	3
scaffold_23	spliced_intron	10975035	10975280	+	asmbl_31186,asmbl_31189,asmbl_31191,asmbl_31193,asmbl_31194,asmbl_31195,asmbl_31196,asmbl_31197	none	STRG.26281.1,STRG.26281.2,Trinity_GG_14524_c0_g1_i13,Trinity_GG_14524_c0_g1_i8,blat.proc3829883.chain_3193,blat.proc3829883.chain_3194,blat.proc3829883.chain_3195,blat.proc3829883.chain_3198,blat.proc3829883.chain_3199,blat.proc3829883.chain_3200,blat.proc3829883.chain_3203	11	STRG.26281.3,blat.proc3829883.chain_3196	2
scaffold_19	starts_in_intron	13233911	13233911	-	asmbl_21838	none	blat.proc3829897.chain_3358	1	STRG.22682.1,blat.proc3829897.chain_3356	2
scaffold_10	alt_acceptor	381369	381370	-	asmbl_2863	none	STRG.11913.3,Trinity_GG_23607_c0_g1_i3,blat.proc3829893.chain_303	3	STRG.11913.1,STRG.11913.2,STRG.11913.4,Trinity_GG_23607_c0_g1_i1,Trinity_GG_23607_c0_g1_i4,Trinity_GG_23607_c0_g1_i5,blat.proc3829893.chain_302,blat.proc3829893.chain_304,blat.proc3829893.chain_305,blat.proc3829893.chain_306	10
scaffold_13	alternate_exon	5281348	5281478	-	asmbl_9643	none	STRG.15810.2	1	STRG.15810.1,Trinity_GG_25890_c0_g1_i1,blat.proc3829895.chain_552	3
scaffold_9	alt_acceptor	17743055	17743056	+	asmbl_54618	none	blat.proc3829877.chain_523	1	STRG.11853.2,blat.proc3829877.chain_522	2
scaffold_3	skipped_exon	5927206	5928685	-	asmbl_38827	none	blat.proc3829887.chain_2990	1	STRG.3248.1,blat.proc3829887.chain_2991,blat.proc3829887.chain_2992,blat.proc3829887.chain_2993	4
scaffold_27	retained_intron	2793632	2795233	+	asmbl_36068	none	STRG.28740.2,Trinity_GG_15912_c1_g1_i2,blat.proc3829885.chain_1815	3	STRG.28740.1,blat.proc3829885.chain_1813,blat.proc3829885.chain_1814	3
scaffold_3	alt_donor	2951810	2951811	+	asmbl_39882	none	STRG.3052.1	1	STRG.3052.2	1
scaffold_17	ends_in_intron	14329903	14329903	+	asmbl_18508	none	blat.proc3829881.chain_1736	1	STRG.20898.1,blat.proc3829881.chain_1737	2
scaffold_26	starts_in_intron	10097847	10097847	-	asmbl_35080	none	blat.proc3829901.chain_1639	1	STRG.28512.1,STRG.28512.2,blat.proc3829901.chain_1637,blat.proc3829901.chain_1638	4
scaffold_27	skipped_exon	3023796	3025670	+	asmbl_36124,asmbl_36125,asmbl_36133	none	STRG.28769.1,STRG.28769.2,blat.proc3829885.chain_1782	3	blat.proc3829885.chain_1779	1
scaffold_14	alt_donor	405082	405083	+	asmbl_11725	none	blat.proc3829879.chain_1469	1	STRG.16722.1,STRG.16722.3,STRG.16722.4,Trinity_GG_9219_c0_g1_i21,Trinity_GG_9219_c0_g1_i3,Trinity_GG_9219_c0_g1_i6,blat.proc3829879.chain_1465,blat.proc3829879.chain_1468,blat.proc3829879.chain_1474	9
scaffold_6	starts_in_intron	5194565	5194565	+	asmbl_46869	none	blat.proc3829873.chain_3584	1	STRG.7489.2,STRG.7489.3,STRG.7489.4,Trinity_GG_4091_c0_g1_i10,blat.proc3829873.chain_3581,blat.proc3829873.chain_3583,blat.proc3829873.chain_3585,blat.proc3829873.chain_3587,blat.proc3829873.chain_3588	9
scaffold_12	spliced_intron	12349852	12350033	+	asmbl_8959,asmbl_8962	none	STRG.15126.1,Trinity_GG_8344_c0_g1_i1,blat.proc3829877.chain_3600,blat.proc3829877.chain_3601	4	Trinity_GG_8344_c0_g1_i2,blat.proc3829877.chain_3602	2
scaffold_3	skipped_exon	1765209	1766311	+	asmbl_39833	none	STRG.2990.2	1	STRG.2990.1	1
scaffold_1	spliced_intron	17729078	17729199	+	asmbl_2516	none	STRG.1242.1,blat.proc3829871.chain_1307	2	blat.proc3829871.chain_1306	1
scaffold_11	alternate_exon	7048375	7049050	+	asmbl_5611,asmbl_5614	none	STRG.13722.3,Trinity_GG_7553_c0_g1_i5,Trinity_GG_7553_c0_g1_i8,blat.proc3829877.chain_2193,blat.proc3829877.chain_2195	5	STRG.13722.2	1
scaffold_1	spliced_intron	12453045	12453262	+	asmbl_2209,asmbl_2210	none	STRG.857.1,STRG.857.2,blat.proc3829871.chain_949	3	blat.proc3829871.chain_950	1
scaffold_7	starts_in_intron	228594	228594	-	asmbl_49495	none	Trinity_GG_21934_c1_g1_i2,blat.proc3829891.chain_969	2	STRG.8588.1,Trinity_GG_21934_c1_g1_i3,blat.proc3829891.chain_968	3
scaffold_28	starts_in_intron	5251933	5251933	-	asmbl_37601	none	blat.proc3829901.chain_2699	1	STRG.29655.1,blat.proc3829901.chain_2697,blat.proc3829901.chain_2698	3
scaffold_1	alternate_exon	11167710	11168153	+	asmbl_2062	none	STRG.739.1,blat.proc3829871.chain_769	2	STRG.739.2	1
scaffold_17	ends_in_intron	5725846	5725846	-	asmbl_18995	none	Trinity_GG_28404_c0_g1_i2,blat.proc3829897.chain_1217	2	STRG.20261.1,STRG.20261.3,blat.proc3829897.chain_1218	3
scaffold_4	alt_acceptor	5106676	5106677	-	asmbl_41294	none	STRG.4404.2	1	STRG.4404.1,blat.proc3829889.chain_513	2
scaffold_26	retained_intron	5483268	5483396	+	asmbl_35519	none	Trinity_GG_15611_c0_g1_i4,blat.proc3829885.chain_1257	2	STRG.28234.1,STRG.28234.2,STRG.28234.3,STRG.28234.4,Trinity_GG_15611_c0_g1_i5	5
scaffold_25	alt_acceptor	7921243	7921244	-	asmbl_34388	none	STRG.27602.2	1	STRG.27602.1	1
scaffold_2	spliced_intron	5440602	5440687	+	asmbl_24445	none	STRG.1951.2,blat.proc3829871.chain_1988	2	STRG.1951.1,blat.proc3829871.chain_1990	2
scaffold_20	skipped_exon	426291	428804	+	asmbl_25505	none	STRG.22729.2	1	STRG.22729.1	1
scaffold_6	starts_in_intron	14471332	14471332	-	asmbl_48945	none	STRG.8201.1,blat.proc3829891.chain_490	2	STRG.8201.2,STRG.8201.3,Trinity_GG_21657_c0_g1_i2,blat.proc3829891.chain_489	4
scaffold_11	alt_donor	10396924	10396925	+	asmbl_5906,asmbl_5909	none	STRG.14037.2,blat.proc3829877.chain_2426	2	STRG.14037.1,blat.proc3829877.chain_2425,blat.proc3829877.chain_2427,blat.proc3829877.chain_2428	4
scaffold_18	retained_exon	8726781	8726888	+	asmbl_20882	none	STRG.21533.5,blat.proc3829881.chain_2486	2	STRG.21533.4	1
scaffold_25	starts_in_intron	9165777	9165777	+	asmbl_33779	none	Trinity_GG_15301_c0_g1_i1,Trinity_GG_15301_c0_g1_i3,blat.proc3829885.chain_747,blat.proc3829885.chain_748	4	STRG.27707.2,Trinity_GG_15301_c0_g1_i2,Trinity_GG_15301_c0_g1_i4,blat.proc3829885.chain_745,blat.proc3829885.chain_746	5
scaffold_27	starts_in_intron	3400876	3400876	+	asmbl_36159	none	Trinity_GG_15869_c0_g1_i2,blat.proc3829885.chain_1711	2	STRG.28796.1,STRG.28796.2,blat.proc3829885.chain_1712	3
scaffold_17	alt_donor	1508014	1508015	+	asmbl_17738,asmbl_17740	none	STRG.19975.1,STRG.19975.2,Trinity_GG_10949_c0_g1_i2,blat.proc3829881.chain_816	4	Trinity_GG_10949_c0_g1_i1,blat.proc3829881.chain_815	2
scaffold_5	alt_donor	2167664	2167665	-	asmbl_45266	none	STRG.5744.3	1	STRG.5744.1,blat.proc3829889.chain_1867	2
scaffold_12	alt_acceptor	11111901	11111902	-	asmbl_7915	none	STRG.15046.1,blat.proc3829893.chain_3372	2	STRG.15046.2,Trinity_GG_25368_c0_g1_i2,blat.proc3829893.chain_3373	3
scaffold_9	alt_acceptor	650549	650550	+	asmbl_53766,asmbl_53767	none	STRG.10787.1,STRG.10787.2,blat.proc3829875.chain_3294	3	STRG.10787.4	1
scaffold_4	retained_intron	16912206	16912455	+	asmbl_43350	none	STRG.5280.3	1	STRG.5280.4	1
scaffold_6	starts_in_intron	19115953	19115953	-	asmbl_49235	none	STRG.8568.4	1	STRG.8568.1,STRG.8568.3,STRG.8568.5,Trinity_GG_21904_c0_g1_i1,Trinity_GG_21904_c0_g1_i3,blat.proc3829891.chain_897,blat.proc3829891.chain_898	7
scaffold_7	spliced_intron	2852620	2854421	-	asmbl_49586,asmbl_49587	none	STRG.8705.3,STRG.8705.4,blat.proc3829891.chain_1060	3	STRG.8705.2,Trinity_GG_21976_c0_g1_i1,Trinity_GG_21976_c1_g1_i1,blat.proc3829891.chain_1058	4
scaffold_13	alt_donor	3996835	3996836	-	asmbl_9563,asmbl_9565	none	STRG.15713.1,blat.proc3829895.chain_460,blat.proc3829895.chain_461	3	STRG.15713.2,blat.proc3829895.chain_459	2
scaffold_19	spliced_intron	9534078	9534340	+	asmbl_22413	none	STRG.22379.1,blat.proc3829881.chain_3228	2	STRG.22379.2,blat.proc3829881.chain_3227	2
scaffold_9	retained_intron	6396897	6397036	-	asmbl_55016	none	blat.proc3829891.chain_3251	1	STRG.11162.1,blat.proc3829891.chain_3250	2
scaffold_10	retained_intron	5740585	5740787	-	asmbl_3299	none	blat.proc3829893.chain_837	1	STRG.12399.1,STRG.12399.2,STRG.12399.3,blat.proc3829893.chain_836,blat.proc3829893.chain_838,blat.proc3829893.chain_839,blat.proc3829893.chain_840	7
scaffold_3	spliced_intron	18937824	18937857	+	asmbl_40706	none	STRG.4063.4	1	blat.proc3829873.chain_426	1
scaffold_7	alt_donor	12453234	12453235	-	asmbl_50043	none	STRG.9342.4	1	STRG.9342.2,blat.proc3829891.chain_1605,blat.proc3829891.chain_1608,blat.proc3829891.chain_1611	4
scaffold_3	ends_in_intron	19406431	19406431	-	asmbl_39596	none	blat.proc3829889.chain_155	1	STRG.4084.1,blat.proc3829889.chain_157,blat.proc3829889.chain_158	3
scaffold_28	retained_intron	5238035	5238122	-	asmbl_37588,asmbl_37593	none	STRG.29652.1,blat.proc3829901.chain_2680,blat.proc3829901.chain_2687	3	STRG.29652.2,Trinity_GG_33579_c0_g1_i6,blat.proc3829901.chain_2682,blat.proc3829901.chain_2683,blat.proc3829901.chain_2685	5
scaffold_5	spliced_intron	14732517	14732623	-	asmbl_45994	none	STRG.6667.1,blat.proc3829889.chain_2713	2	Trinity_GG_20753_c0_g1_i2,blat.proc3829889.chain_2715,blat.proc3829889.chain_2716	3
scaffold_9	retained_intron	16562642	16563669	-	asmbl_55546,asmbl_55550,asmbl_55551	none	STRG.11797.6,blat.proc3829893.chain_83,blat.proc3829893.chain_84	3	STRG.11797.1,STRG.11797.2,STRG.11797.3,STRG.11797.4,STRG.11797.5,Trinity_GG_23481_c0_g3_i5,Trinity_GG_23481_c0_g3_i6,blat.proc3829893.chain_85,blat.proc3829893.chain_88	9
scaffold_1	spliced_intron	14349751	14349879	-	asmbl_899,asmbl_900,asmbl_901,asmbl_903	none	STRG.1030.1,STRG.1030.2,blat.proc3829887.chain_924,blat.proc3829887.chain_925,blat.proc3829887.chain_926,blat.proc3829887.chain_928	6	blat.proc3829887.chain_927	1
scaffold_1	retained_exon	11911794	11911928	+	asmbl_2148	none	Trinity_GG_503_c0_g1_i2,blat.proc3829871.chain_899	2	Trinity_GG_503_c0_g1_i1,blat.proc3829871.chain_900	2
scaffold_11	retained_intron	4744838	4745154	-	asmbl_6600	none	blat.proc3829893.chain_2037	1	STRG.13555.1,blat.proc3829893.chain_2036	2
scaffold_1	alternate_exon	15887343	15887410	-	asmbl_967	none	STRG.1116.1,blat.proc3829887.chain_1018,blat.proc3829887.chain_1019	3	STRG.1116.2	1
scaffold_16	spliced_intron	5393917	5394344	+	asmbl_17004	none	STRG.19275.1,Trinity_GG_10554_c0_g1_i2,blat.proc3829881.chain_137	3	STRG.19275.2,blat.proc3829881.chain_135	2
scaffold_17	alternate_exon	2274777	2276490	-	asmbl_18784	none	STRG.20005.1,Trinity_GG_28229_c1_g1_i1,Trinity_GG_28229_c1_g1_i2,blat.proc3829897.chain_940,blat.proc3829897.chain_944,blat.proc3829897.chain_945	6	STRG.20005.2,blat.proc3829897.chain_943	2
scaffold_1	alternate_exon	14359034	14363016	-	asmbl_915	none	STRG.1033.3	1	STRG.1033.4,blat.proc3829887.chain_883	2
scaffold_12	retained_intron	16721517	16721700	-	asmbl_8276	none	Trinity_GG_25636_c0_g1_i1,blat.proc3829895.chain_108	2	STRG.15396.1,blat.proc3829895.chain_109	2
scaffold_24	alt_donor	278020	278021	-	asmbl_32696	none	STRG.26305.2,Trinity_GG_31691_c0_g1_i2,blat.proc3829899.chain_3345	3	STRG.26305.1,Trinity_GG_31691_c0_g1_i3,blat.proc3829899.chain_3346	3
scaffold_13	retained_intron	7371132	7371249	+	asmbl_11029	none	blat.proc3829879.chain_690	1	STRG.16021.1,Trinity_GG_8780_c0_g1_i1,blat.proc3829879.chain_689	3
scaffold_5	alt_acceptor	15801946	15801947	-	asmbl_46110	none	STRG.6762.1	1	STRG.6762.2	1
scaffold_13	retained_exon	8348306	8348586	+	asmbl_11108	none	STRG.16111.1,blat.proc3829879.chain_873	2	STRG.16111.2,blat.proc3829879.chain_874	2
scaffold_15	alternate_exon	6785184	6785387	+	asmbl_14205	none	STRG.18285.1	1	STRG.18285.2,Trinity_GG_10035_c0_g1_i1,blat.proc3829879.chain_2921	3
scaffold_5	skipped_exon	10419526	10422301	-	asmbl_45740	none	STRG.6328.2,blat.proc3829889.chain_2422	2	STRG.6328.1,blat.proc3829889.chain_2421	2
scaffold_14	starts_in_intron	11076853	11076853	-	asmbl_13427	none	STRG.17431.1	1	STRG.17431.2,STRG.17431.3,blat.proc3829895.chain_2140	3
scaffold_3	spliced_intron	1268754	1268964	-	asmbl_38659	none	STRG.2955.1	1	STRG.2955.3,Trinity_GG_18635_c0_g1_i3,blat.proc3829887.chain_2759	3
scaffold_12	retained_intron	14045126	14045217	-	asmbl_8091,asmbl_8093	none	STRG.15216.2,STRG.15216.3,blat.proc3829893.chain_3658,blat.proc3829893.chain_3662	4	STRG.15216.1,STRG.15216.5,blat.proc3829893.chain_3661	3
scaffold_14	retained_intron	15468155	15468287	+	asmbl_12586	none	STRG.17771.1,Trinity_GG_9775_c1_g1_i1	2	STRG.17771.2	1
scaffold_17	skipped_exon	2354078	2355866	+	asmbl_17768,asmbl_17770	none	STRG.20017.5,STRG.20017.7	2	STRG.20017.2,STRG.20017.4,STRG.20017.6	3
scaffold_7	alternate_exon	8162448	8171086	+	asmbl_50844	none	STRG.9039.1,blat.proc3829875.chain_1470	2	STRG.9039.3,Trinity_GG_5002_c0_g2_i2,blat.proc3829875.chain_1469	3
scaffold_24	alternate_exon	10484852	10484958	+	asmbl_32574,asmbl_32580	none	STRG.27000.3,STRG.27000.4	2	STRG.27000.1,STRG.27000.2,Trinity_GG_14920_c0_g1_i2,Trinity_GG_14920_c0_g1_i5,Trinity_GG_14920_c0_g1_i6,Trinity_GG_14920_c0_g1_i7,blat.proc3829885.chain_126,blat.proc3829885.chain_127,blat.proc3829885.chain_128,blat.proc3829885.chain_130	10
scaffold_14	alt_donor	12628884	12628885	-	asmbl_13566	none	Trinity_GG_26902_c0_g1_i2,blat.proc3829895.chain_2325	2	STRG.17566.1,STRG.17566.2,STRG.17566.3,blat.proc3829895.chain_2326,blat.proc3829895.chain_2327,blat.proc3829895.chain_2328,blat.proc3829895.chain_2329,blat.proc3829895.chain_2330,blat.proc3829895.chain_2331,blat.proc3829895.chain_2332,blat.proc3829895.chain_2333	11
scaffold_12	alternate_exon	10533666	10536248	+	asmbl_8892	none	STRG.15006.1,Trinity_GG_8266_c0_g1_i2,blat.proc3829877.chain_3466	3	Trinity_GG_8266_c0_g1_i3,blat.proc3829877.chain_3467	2
scaffold_11	retained_intron	9021079	9021443	-	asmbl_6888	none	blat.proc3829893.chain_2278	1	STRG.13926.1,STRG.13926.2,blat.proc3829893.chain_2276,blat.proc3829893.chain_2277,blat.proc3829893.chain_2279	5
scaffold_2	alternate_exon	3898545	3898886	+	asmbl_24340,asmbl_24342	none	STRG.1831.3,blat.proc3829871.chain_1840,blat.proc3829871.chain_1843	3	STRG.1831.1,blat.proc3829871.chain_1839,blat.proc3829871.chain_1841	3
scaffold_18	alternate_exon	12935159	12935335	+	asmbl_21002	none	STRG.21731.1	1	STRG.21731.3	1
scaffold_2	alt_donor	14434190	14434191	+	asmbl_24962	none	STRG.2445.1	1	STRG.2445.2,blat.proc3829871.chain_2602	2
scaffold_7	alt_donor	4178756	4178757	+	asmbl_50602,asmbl_50604	none	STRG.8807.2,blat.proc3829875.chain_1170	2	STRG.8807.1,STRG.8807.3,blat.proc3829875.chain_1171	3
scaffold_23	retained_intron	5583740	5583837	+	asmbl_30882	none	STRG.25912.3,blat.proc3829883.chain_2729	2	STRG.25912.4	1
scaffold_25	retained_exon	4818580	4818694	+	asmbl_33536	none	STRG.27398.2	1	Trinity_GG_15069_c0_g1_i3,blat.proc3829885.chain_358	2
scaffold_9	alt_acceptor	5019200	5019201	+	asmbl_53961	none	STRG.11062.2,Trinity_GG_6159_c0_g1_i2,blat.proc3829875.chain_3528	3	Trinity_GG_6159_c0_g1_i3,blat.proc3829875.chain_3529	2
scaffold_18	skipped_exon	1512722	1513566	+	asmbl_20385	none	STRG.21033.2	1	STRG.21033.3	1
scaffold_20	spliced_intron	7471394	7471647	-	asmbl_26832	none	blat.proc3829899.chain_393	1	Trinity_GG_30045_c0_g1_i4,blat.proc3829899.chain_392	2
scaffold_5	starts_in_intron	16506705	16506705	+	asmbl_44768	none	Trinity_GG_3732_c0_g1_i1,blat.proc3829873.chain_2953	2	STRG.6832.1,blat.proc3829873.chain_2955	2
scaffold_1	skipped_exon	6015395	6016010	+	asmbl_1811	none	blat.proc3829871.chain_486	1	STRG.406.1,blat.proc3829871.chain_484,blat.proc3829871.chain_485	3
scaffold_18	retained_intron	8726889	8727002	+	asmbl_20881,asmbl_20888	none	STRG.21533.6,blat.proc3829881.chain_2484	2	STRG.21533.1,STRG.21533.2,STRG.21533.3,STRG.21533.5,blat.proc3829881.chain_2483,blat.proc3829881.chain_2485,blat.proc3829881.chain_2486,blat.proc3829881.chain_2488	8
scaffold_13	alternate_exon	14484999	14485037	-	asmbl_10161	none	STRG.16490.1	1	STRG.16490.2	1
scaffold_14	retained_exon	3797031	3797066	+	asmbl_11940	none	STRG.16938.2	1	STRG.16938.1,blat.proc3829879.chain_1667	2
scaffold_5	spliced_intron	15462792	15463060	-	asmbl_46057,asmbl_46059,asmbl_46060	none	STRG.6726.1,STRG.6726.2,blat.proc3829889.chain_2790,blat.proc3829889.chain_2791	4	Trinity_GG_20794_c1_g1_i1,blat.proc3829889.chain_2792	2
scaffold_6	starts_in_intron	5260410	5260410	-	asmbl_48350	none	Trinity_GG_21252_c0_g2_i1,blat.proc3829889.chain_3552	2	STRG.7490.1,blat.proc3829889.chain_3551	2
scaffold_7	skipped_exon	13960169	13962754	+	asmbl_51279	none	blat.proc3829875.chain_1953	1	STRG.9485.1,STRG.9485.2,Trinity_GG_5272_c0_g1_i1,blat.proc3829875.chain_1951,blat.proc3829875.chain_1955	5
scaffold_15	spliced_intron	4491295	4491494	+	asmbl_14083,asmbl_14084,asmbl_14085,asmbl_14086,asmbl_14087,asmbl_14088	none	STRG.18165.1,STRG.18165.2,blat.proc3829879.chain_2747,blat.proc3829879.chain_2748,blat.proc3829879.chain_2749,blat.proc3829879.chain_2750,blat.proc3829879.chain_2752	7	blat.proc3829879.chain_2746	1
scaffold_8	starts_in_intron	4828091	4828091	-	asmbl_52793	none	blat.proc3829891.chain_2095	1	STRG.9938.1,STRG.9938.2,blat.proc3829891.chain_2094,blat.proc3829891.chain_2096	4
scaffold_15	retained_exon	6957134	6957668	-	asmbl_15290,asmbl_15291	none	STRG.18291.1,blat.proc3829895.chain_3051,blat.proc3829895.chain_3053	3	STRG.18291.4	1
scaffold_19	starts_in_intron	827811	827811	-	asmbl_21211,asmbl_21214	none	STRG.21862.3,STRG.21862.4,blat.proc3829897.chain_2633	3	STRG.21862.1,STRG.21862.2,STRG.21862.5,blat.proc3829897.chain_2631,blat.proc3829897.chain_2632	5
scaffold_17	spliced_intron	1304202	1304506	-	asmbl_18737,asmbl_18739,asmbl_18741,asmbl_18743,asmbl_18744	none	STRG.19954.1,blat.proc3829897.chain_927,blat.proc3829897.chain_928,blat.proc3829897.chain_929,blat.proc3829897.chain_930,blat.proc3829897.chain_932	6	STRG.19954.2,blat.proc3829897.chain_931	2
scaffold_2	retained_exon	15267759	15267792	+	asmbl_25029,asmbl_25031	none	STRG.2480.3,blat.proc3829871.chain_2522	2	STRG.2480.1,STRG.2480.2,Trinity_GG_1353_c0_g1_i14,blat.proc3829871.chain_2514,blat.proc3829871.chain_2515,blat.proc3829871.chain_2516,blat.proc3829871.chain_2518,blat.proc3829871.chain_2519,blat.proc3829871.chain_2520,blat.proc3829871.chain_2521,blat.proc3829871.chain_2523	11
scaffold_1	alt_acceptor	20349164	20349165	+	asmbl_2603	none	STRG.1398.4	1	STRG.1398.2,STRG.1398.3,STRG.1398.5,STRG.1398.6	4
scaffold_5	alt_acceptor	10298210	10298211	-	asmbl_45719,asmbl_45722	none	STRG.6324.1,blat.proc3829889.chain_2410,blat.proc3829889.chain_2412	3	STRG.6324.2,STRG.6324.3	2
scaffold_28	alternate_exon	547607	547866	-	asmbl_37238	none	STRG.29253.1,Trinity_GG_33370_c0_g1_i1,blat.proc3829901.chain_2335	3	STRG.29253.2	1
scaffold_12	starts_in_intron	9505571	9505571	+	asmbl_8829	none	Trinity_GG_8259_c0_g1_i2,blat.proc3829877.chain_3449	2	STRG.14922.1,STRG.14922.2,Trinity_GG_8259_c0_g1_i1,Trinity_GG_8259_c0_g1_i3,blat.proc3829877.chain_3450,blat.proc3829877.chain_3451	6
scaffold_12	ends_in_intron	12801064	12801064	+	asmbl_8987	none	blat.proc3829877.chain_3577	1	STRG.15161.1,STRG.15161.2,blat.proc3829877.chain_3578,blat.proc3829877.chain_3580	4
scaffold_28	alt_donor	8908653	8908654	-	asmbl_37815	none	STRG.29929.2,Trinity_GG_33789_c0_g1_i1,blat.proc3829901.chain_3039	3	STRG.29929.1,blat.proc3829901.chain_3038	2
scaffold_11	retained_exon	2090878	2090989	+	asmbl_5318,asmbl_5319	none	STRG.13357.1,STRG.13357.3,blat.proc3829877.chain_1858,blat.proc3829877.chain_1860	4	STRG.13357.2,blat.proc3829877.chain_1859	2
scaffold_2	retained_exon	7470022	7470198	-	asmbl_23286,asmbl_23289	none	STRG.2075.4,blat.proc3829887.chain_1892	2	STRG.2075.3,Trinity_GG_18127_c0_g1_i18,blat.proc3829887.chain_1893	3
scaffold_2	starts_in_intron	4681038	4681038	+	asmbl_24398	none	Trinity_GG_1029_c1_g1_i5,blat.proc3829871.chain_1883	2	STRG.1894.1,blat.proc3829871.chain_1884,blat.proc3829871.chain_1885,blat.proc3829871.chain_1886	4
scaffold_7	spliced_intron	13196688	13197769	-	asmbl_50114,asmbl_50115,asmbl_50117	none	STRG.9418.1,blat.proc3829891.chain_1691,blat.proc3829891.chain_1692,blat.proc3829891.chain_1695	4	STRG.9418.3,Trinity_GG_22315_c0_g1_i2,blat.proc3829891.chain_1696,blat.proc3829891.chain_1697,blat.proc3829891.chain_1698	5
scaffold_3	ends_in_intron	11504574	11504574	+	asmbl_40307,asmbl_40309	none	blat.proc3829871.chain_3695,blat.proc3829871.chain_3697	2	STRG.3582.1,Trinity_GG_1991_c0_g1_i3,blat.proc3829871.chain_3694,blat.proc3829871.chain_3696	4
scaffold_22	alternate_exon	1006301	1010932	+	asmbl_29208,asmbl_29210	none	STRG.24742.2,blat.proc3829883.chain_1807,blat.proc3829883.chain_1808	3	STRG.24742.1,Trinity_GG_13691_c0_g1_i6,blat.proc3829883.chain_1811	3
scaffold_6	retained_intron	12480315	12482223	+	asmbl_47333	none	STRG.7999.3,Trinity_GG_4391_c0_g1_i5,Trinity_GG_4391_c1_g1_i1,Trinity_GG_4391_c2_g1_i1,blat.proc3829875.chain_406,blat.proc3829875.chain_410,blat.proc3829875.chain_411	7	STRG.7999.1,STRG.7999.2,STRG.7999.4,blat.proc3829875.chain_407,blat.proc3829875.chain_408,blat.proc3829875.chain_409	6
scaffold_1	alt_donor	12956135	12956136	+	asmbl_2270	none	STRG.926.2	1	STRG.926.1,STRG.926.3,blat.proc3829871.chain_1014,blat.proc3829871.chain_1015	4
scaffold_3	retained_intron	14259319	14259409	+	asmbl_40462	none	STRG.3764.4,Trinity_GG_2074_c0_g1_i1,blat.proc3829873.chain_103	3	STRG.3764.1,STRG.3764.2,Trinity_GG_2074_c0_g1_i4,blat.proc3829873.chain_102,blat.proc3829873.chain_104,blat.proc3829873.chain_105,blat.proc3829873.chain_106	7
scaffold_7	alt_acceptor	12082548	12082549	+	asmbl_51096,asmbl_51100	none	STRG.9310.1,STRG.9310.3,Trinity_GG_5111_c0_g1_i1,blat.proc3829875.chain_1658	4	STRG.9310.2,Trinity_GG_5111_c0_g1_i3,blat.proc3829875.chain_1657	3
scaffold_19	alt_acceptor	3191573	3191574	+	asmbl_22106	none	STRG.21994.2	1	STRG.21994.1,Trinity_GG_12167_c0_g1_i2,blat.proc3829881.chain_2950	3
scaffold_28	retained_intron	6926010	6926670	-	asmbl_37691	none	STRG.29744.1,Trinity_GG_33697_c0_g1_i1,blat.proc3829901.chain_2888	3	STRG.29744.2,blat.proc3829901.chain_2889	2
scaffold_17	alternate_exon	13965829	13966090	-	asmbl_19439,asmbl_19441	none	STRG.20874.1,blat.proc3829897.chain_1762	2	STRG.20874.2,blat.proc3829897.chain_1761	2
scaffold_3	spliced_intron	10274721	10275024	+	asmbl_40206,asmbl_40209,asmbl_40212	none	STRG.3461.1,STRG.3461.3,STRG.3461.4,blat.proc3829871.chain_3621,blat.proc3829871.chain_3622	5	blat.proc3829871.chain_3624	1
scaffold_26	retained_intron	6350865	6351295	-	asmbl_34955	none	STRG.28315.1,blat.proc3829901.chain_1401	2	STRG.28315.4	1
scaffold_23	retained_exon	8066624	8066699	-	asmbl_31788	none	STRG.26099.2,blat.proc3829899.chain_3135	2	STRG.26099.1,blat.proc3829899.chain_3134	2
scaffold_2	retained_intron	14560804	14561388	+	asmbl_24981	none	Trinity_GG_1360_c0_g2_i1,blat.proc3829871.chain_2571	2	STRG.2454.1,STRG.2454.2,STRG.2454.3,STRG.2454.4,STRG.2454.5,blat.proc3829871.chain_2565,blat.proc3829871.chain_2570	7
scaffold_4	retained_intron	18282392	18282451	+	asmbl_43427	none	Trinity_GG_2987_c0_g1_i1,blat.proc3829873.chain_1655,blat.proc3829873.chain_1656	3	STRG.5427.1	1
scaffold_24	starts_in_intron	6075845	6075845	+	asmbl_32291	none	Trinity_GG_14710_c0_g2_i1,blat.proc3829883.chain_3495	2	STRG.26647.1,STRG.26647.2,STRG.26647.3,blat.proc3829883.chain_3492,blat.proc3829883.chain_3493,blat.proc3829883.chain_3494	6
scaffold_14	starts_in_intron	6891095	6891095	+	asmbl_12087	none	Trinity_GG_9424_c0_g1_i1	1	STRG.17113.1	1
scaffold_2	alt_acceptor	16414060	16414061	-	asmbl_23703,asmbl_23706	none	STRG.2585.2,blat.proc3829887.chain_2409	2	STRG.2585.1,blat.proc3829887.chain_2410,blat.proc3829887.chain_2411,blat.proc3829887.chain_2412	4
scaffold_27	alt_donor	9435766	9435767	-	asmbl_37091	none	STRG.29170.4,Trinity_GG_33337_c0_g1_i3,blat.proc3829901.chain_2274	3	STRG.29170.1,blat.proc3829901.chain_2276	2
scaffold_2	alt_acceptor	17722022	17722023	+	asmbl_25232	none	blat.proc3829871.chain_2872	1	blat.proc3829871.chain_2871	1
scaffold_322	spliced_intron	6499	6737	-	asmbl_40914	none	STRG.30256.2	1	Trinity_GG_33980_c0_g1_i6,Trinity_GG_34090_c0_g1_i4,blat.proc3829901.chain_3329	3
scaffold_5	retained_intron	16321133	16321283	+	asmbl_44745	none	blat.proc3829873.chain_2899	1	STRG.6820.1,blat.proc3829873.chain_2898,blat.proc3829873.chain_2901	3
scaffold_5	starts_in_intron	18787620	18787620	+	asmbl_44939	none	Trinity_GG_3846_c0_g1_i1,blat.proc3829873.chain_3143	2	STRG.6998.1,STRG.6998.2,Trinity_GG_3846_c0_g1_i2,Trinity_GG_3846_c0_g1_i3,blat.proc3829873.chain_3142,blat.proc3829873.chain_3144	6
scaffold_8	alternate_exon	4851118	4851282	-	asmbl_52800	none	blat.proc3829891.chain_2056	1	STRG.9941.1,blat.proc3829891.chain_2051,blat.proc3829891.chain_2052,blat.proc3829891.chain_2053	4
scaffold_9	spliced_intron	8395341	8395484	+	asmbl_54155	none	STRG.11249.4,blat.proc3829877.chain_18	2	STRG.11249.2,STRG.11249.3,blat.proc3829877.chain_19,blat.proc3829877.chain_21	4
scaffold_27	ends_in_intron	2642025	2642025	+	asmbl_36058	none	blat.proc3829885.chain_1795	1	STRG.28719.2,blat.proc3829885.chain_1793	2
scaffold_1	starts_in_intron	11444021	11444021	+	asmbl_2100	none	Trinity_GG_460_c0_g1_i1,blat.proc3829871.chain_795	2	STRG.750.1,blat.proc3829871.chain_796	2
scaffold_15	alt_acceptor	4095517	4095518	+	asmbl_14062	none	STRG.18140.1,blat.proc3829879.chain_2787	2	STRG.18140.2,blat.proc3829879.chain_2785	2
scaffold_10	alt_acceptor	1173801	1173802	+	asmbl_4199	none	STRG.12000.4	1	STRG.12000.1,STRG.12000.2,STRG.12000.3,blat.proc3829877.chain_708,blat.proc3829877.chain_709,blat.proc3829877.chain_710,blat.proc3829877.chain_711	7
scaffold_10	alternate_exon	926313	926545	-	asmbl_2926	none	Trinity_GG_23671_c0_g1_i2,blat.proc3829893.chain_421	2	STRG.11959.2	1
scaffold_8	retained_intron	16274198	16274331	-	asmbl_53384	none	STRG.10612.3,Trinity_GG_22905_c0_g1_i2,blat.proc3829891.chain_2749	3	STRG.10612.1,STRG.10612.2,STRG.10612.4,blat.proc3829891.chain_2748,blat.proc3829891.chain_2750	5
scaffold_1	starts_in_intron	13889556	13889556	+	asmbl_2308	none	blat.proc3829871.chain_1086	1	STRG.994.1,STRG.994.2,blat.proc3829871.chain_1082,blat.proc3829871.chain_1083,blat.proc3829871.chain_1085,blat.proc3829871.chain_1087	6
scaffold_5	starts_in_intron	8746692	8746692	+	asmbl_44229,asmbl_44230	none	blat.proc3829873.chain_2340,blat.proc3829873.chain_2341	2	STRG.6200.1,Trinity_GG_3381_c0_g1_i3,Trinity_GG_3381_c0_g1_i5,blat.proc3829873.chain_2338,blat.proc3829873.chain_2342	5
scaffold_13	spliced_intron	8831597	8831757	-	asmbl_9952	none	STRG.16144.1,blat.proc3829895.chain_860	2	Trinity_GG_26045_c0_g1_i2,blat.proc3829895.chain_859	2
scaffold_9	retained_intron	16560431	16561320	-	asmbl_55544,asmbl_55546,asmbl_55547	none	STRG.11797.2,STRG.11797.3,STRG.11797.6,Trinity_GG_23481_c0_g2_i1,blat.proc3829893.chain_82	5	STRG.11797.5	1
scaffold_21	alt_acceptor	6536217	6536218	+	asmbl_28681,asmbl_28685	none	STRG.24166.1,blat.proc3829883.chain_1322,blat.proc3829883.chain_1324	3	STRG.24166.2,blat.proc3829883.chain_1321	2
scaffold_10	retained_intron	14838682	14838716	-	asmbl_3866	none	blat.proc3829893.chain_1483	1	STRG.13020.1,blat.proc3829893.chain_1482	2
scaffold_11	alt_donor	9136371	9136372	-	asmbl_6899	none	STRG.13942.3	1	blat.proc3829893.chain_2285	1
scaffold_4	retained_intron	17580414	17580979	+	asmbl_43403	none	STRG.5347.4	1	STRG.5347.2	1
scaffold_19	starts_in_intron	6687652	6687652	+	asmbl_22237	none	STRG.22182.2,blat.proc3829881.chain_3045	2	STRG.22182.1,Trinity_GG_12219_c0_g1_i3,Trinity_GG_12219_c0_g1_i4,blat.proc3829881.chain_3046,blat.proc3829881.chain_3047,blat.proc3829881.chain_3048	6
scaffold_19	alternate_exon	12423838	12425527	+	asmbl_22605	none	Trinity_GG_12480_c0_g2_i1,blat.proc3829881.chain_3522	2	STRG.22558.1,blat.proc3829881.chain_3515,blat.proc3829881.chain_3516,blat.proc3829881.chain_3517,blat.proc3829881.chain_3518,blat.proc3829881.chain_3519,blat.proc3829881.chain_3520	7
scaffold_18	spliced_intron	9163565	9163645	+	asmbl_20900,asmbl_20901	none	STRG.21548.1,Trinity_GG_11895_c0_g1_i1,Trinity_GG_11895_c0_g1_i2,blat.proc3829881.chain_2505,blat.proc3829881.chain_2506	5	Trinity_GG_11895_c0_g1_i3,blat.proc3829881.chain_2507	2
scaffold_2	alt_donor	2907199	2907200	-	asmbl_22969,asmbl_22970,asmbl_22972,asmbl_22973	none	STRG.1728.1,STRG.1728.2,blat.proc3829887.chain_1509,blat.proc3829887.chain_1510,blat.proc3829887.chain_1511,blat.proc3829887.chain_1512	6	blat.proc3829887.chain_1508	1
scaffold_11	starts_in_intron	323810	323810	-	asmbl_6368	none	STRG.13252.1,Trinity_GG_24427_c0_g1_i1,blat.proc3829893.chain_1704	3	STRG.13252.2,Trinity_GG_24427_c0_g1_i2,blat.proc3829893.chain_1703	3
scaffold_9	alt_donor	14817773	14817774	-	asmbl_55463,asmbl_55467	none	STRG.11693.3,STRG.11693.6,blat.proc3829893.chain_6	3	STRG.11693.1,STRG.11693.4,STRG.11693.5,blat.proc3829893.chain_10,blat.proc3829893.chain_3,blat.proc3829893.chain_7,blat.proc3829893.chain_8	7
scaffold_7	alt_acceptor	18619282	18619283	-	asmbl_50302,asmbl_50303,asmbl_50304,asmbl_50305	none	STRG.9671.1,Trinity_GG_22452_c0_g1_i4,blat.proc3829891.chain_1915,blat.proc3829891.chain_1916,blat.proc3829891.chain_1917,blat.proc3829891.chain_1918	6	STRG.9671.2	1
scaffold_8	starts_in_intron	62566	62566	-	asmbl_52683	none	blat.proc3829891.chain_1971	1	STRG.9707.1,blat.proc3829891.chain_1972,blat.proc3829891.chain_1973	3
scaffold_20	starts_in_intron	11118175	11118175	-	asmbl_27064	none	blat.proc3829899.chain_631	1	STRG.23613.1,blat.proc3829899.chain_630	2
scaffold_25	spliced_intron	9292426	9292453	+	asmbl_33793	none	STRG.27727.1	1	Trinity_GG_15281_c1_g1_i1,blat.proc3829885.chain_717	2
scaffold_7	spliced_intron	4930321	4930697	+	asmbl_50651,asmbl_50652,asmbl_50656,asmbl_50660,asmbl_50661,asmbl_50662,asmbl_50663	none	STRG.8834.1,STRG.8834.2,blat.proc3829875.chain_1275,blat.proc3829875.chain_1276,blat.proc3829875.chain_1279,blat.proc3829875.chain_1281,blat.proc3829875.chain_1282,blat.proc3829875.chain_1283	8	blat.proc3829875.chain_1278	1
scaffold_20	skipped_exon	10132449	10132774	+	asmbl_26091	none	STRG.23543.2	1	blat.proc3829883.chain_650	1
scaffold_16	retained_exon	15219675	15219803	+	asmbl_17522	none	STRG.19866.2,blat.proc3829881.chain_657	2	STRG.19866.1	1
scaffold_19	retained_exon	12958036	12958121	-	asmbl_21779	none	STRG.22600.1	1	Trinity_GG_29572_c0_g1_i6,Trinity_GG_29572_c0_g1_i7,blat.proc3829897.chain_3292,blat.proc3829897.chain_3295	4
scaffold_18	alternate_exon	1967427	1967465	-	asmbl_19715	none	STRG.21075.2,blat.proc3829897.chain_1968	2	STRG.21075.1,blat.proc3829897.chain_1967	2
scaffold_25	spliced_intron	5157955	5158103	-	asmbl_34225,asmbl_34227	none	STRG.27422.1,blat.proc3829901.chain_742,blat.proc3829901.chain_746,blat.proc3829901.chain_749	4	blat.proc3829901.chain_748	1
scaffold_20	retained_intron	12095031	12095381	-	asmbl_27147	none	STRG.23692.1,blat.proc3829899.chain_687	2	STRG.23692.2,blat.proc3829899.chain_686	2
scaffold_20	alt_acceptor	11078653	11078654	-	asmbl_27055,asmbl_27057	none	STRG.23611.2,blat.proc3829899.chain_624,blat.proc3829899.chain_626	3	STRG.23611.1,blat.proc3829899.chain_622	2
scaffold_9	starts_in_intron	13035359	13035359	-	asmbl_55374	none	blat.proc3829891.chain_3686	1	STRG.11603.1	1
scaffold_2	alternate_exon	4331448	4331479	-	asmbl_23097	none	STRG.1860.2,blat.proc3829887.chain_1730	2	STRG.1860.1,blat.proc3829887.chain_1729	2
scaffold_15	starts_in_intron	4515422	4515422	+	asmbl_14096	none	STRG.18168.1	1	blat.proc3829879.chain_2801	1
scaffold_28	spliced_intron	5391084	5391169	+	asmbl_38279,asmbl_38284	none	STRG.29664.1,STRG.29664.2,Trinity_GG_16450_c0_g1_i2,blat.proc3829885.chain_2784	4	STRG.29664.4,Trinity_GG_16450_c0_g1_i3,blat.proc3829885.chain_2785,blat.proc3829885.chain_2786	4
scaffold_4	spliced_intron	5648812	5649001	-	asmbl_41352,asmbl_41354	none	STRG.4469.2,STRG.4469.3,blat.proc3829889.chain_614	3	STRG.4469.1,Trinity_GG_19533_c1_g1_i2,blat.proc3829889.chain_615,blat.proc3829889.chain_617,blat.proc3829889.chain_618	5
scaffold_16	alt_donor	3706316	3706317	+	asmbl_16937	none	STRG.19166.2	1	blat.proc3829881.chain_34	1
scaffold_20	alt_acceptor	10132773	10132774	+	asmbl_26091	none	STRG.23543.2	1	blat.proc3829883.chain_650	1
scaffold_9	ends_in_intron	6436202	6436202	-	asmbl_55022	none	blat.proc3829891.chain_3318	1	STRG.11169.1,STRG.11169.2	2
scaffold_19	retained_exon	5643934	5644042	-	asmbl_21393	none	blat.proc3829897.chain_2890	1	blat.proc3829897.chain_2889	1
scaffold_1	ends_in_intron	3436317	3436317	+	asmbl_1594	none	Trinity_GG_154_c1_g1_i1,blat.proc3829871.chain_268	2	STRG.208.1,STRG.208.2,Trinity_GG_154_c0_g1_i1,Trinity_GG_154_c0_g1_i2,blat.proc3829871.chain_266,blat.proc3829871.chain_267	6
scaffold_8	ends_in_intron	4749935	4749935	-	asmbl_52784	none	Trinity_GG_22552_c0_g1_i1,blat.proc3829891.chain_2085	2	STRG.9924.1,Trinity_GG_22552_c0_g1_i2,Trinity_GG_22552_c0_g1_i3,blat.proc3829891.chain_2086,blat.proc3829891.chain_2087	5
scaffold_7	skipped_exon	8773897	8774927	+	asmbl_50935,asmbl_50938	none	STRG.9107.2,STRG.9107.3	2	STRG.9107.1	1
scaffold_1	alternate_exon	17619448	17619629	-	asmbl_1048	none	STRG.1226.2,blat.proc3829887.chain_1083	2	STRG.1226.1	1
scaffold_9	ends_in_intron	3846775	3846775	-	asmbl_54908	none	Trinity_GG_23088_c0_g1_i1	1	STRG.10995.1,blat.proc3829891.chain_3112	2
scaffold_1	alt_acceptor	14528878	14528879	-	asmbl_938	none	STRG.1048.1,blat.proc3829887.chain_933	2	blat.proc3829887.chain_932	1
scaffold_7	alt_acceptor	18400071	18400072	+	asmbl_51411	none	STRG.9660.2,blat.proc3829875.chain_2122	2	STRG.9660.1,STRG.9660.3,blat.proc3829875.chain_2120,blat.proc3829875.chain_2121	4
scaffold_13	starts_in_intron	659559	659559	+	asmbl_10468	none	Trinity_GG_8492_c0_g1_i1,blat.proc3829879.chain_118	2	STRG.15438.1,STRG.15438.2,blat.proc3829879.chain_117	3
scaffold_13	alt_donor	12243648	12243649	-	asmbl_10090	none	STRG.16344.3,blat.proc3829895.chain_1094	2	STRG.16344.1,STRG.16344.2,blat.proc3829895.chain_1095,blat.proc3829895.chain_1097	4
scaffold_8	alternate_exon	14536961	14537063	+	asmbl_52366	none	STRG.10527.1,blat.proc3829875.chain_3023	2	STRG.10527.2	1
scaffold_25	spliced_intron	3725793	3725904	+	asmbl_33454,asmbl_33455	none	STRG.27303.1,STRG.27303.2,blat.proc3829885.chain_329,blat.proc3829885.chain_330	4	STRG.27303.3	1
scaffold_300	alt_acceptor	2163	2164	+	asmbl_40849,asmbl_40850,asmbl_40851	none	STRG.30247.1,STRG.30247.2,STRG.30247.3,blat.proc3829885.chain_3278,blat.proc3829885.chain_3279	5	blat.proc3829885.chain_3281	1
scaffold_7	starts_in_intron	12423885	12423885	-	asmbl_50031	none	blat.proc3829891.chain_1559	1	STRG.9336.1,blat.proc3829891.chain_1560	2
scaffold_7	alt_acceptor	1456141	1456142	-	asmbl_49551	none	STRG.8637.1,blat.proc3829891.chain_1024	2	STRG.8637.2	1
scaffold_21	spliced_intron	2516716	2516804	+	asmbl_28420,asmbl_28422	none	STRG.23866.1,STRG.23866.2,blat.proc3829883.chain_1002	3	Trinity_GG_13216_c0_g1_i3,blat.proc3829883.chain_1000	2
scaffold_21	starts_in_intron	256482	256482	-	asmbl_27312,asmbl_27324,asmbl_27325	none	blat.proc3829899.chain_789,blat.proc3829899.chain_792,blat.proc3829899.chain_793	3	STRG.23718.1,STRG.23718.2,STRG.23718.3,STRG.23718.4,STRG.23718.5,STRG.23718.6,STRG.23718.7,STRG.23718.8,Trinity_GG_30232_c0_g1_i4,blat.proc3829899.chain_781,blat.proc3829899.chain_782,blat.proc3829899.chain_783,blat.proc3829899.chain_785,blat.proc3829899.chain_786,blat.proc3829899.chain_787,blat.proc3829899.chain_788,blat.proc3829899.chain_790	17
scaffold_26	spliced_intron	9083212	9083394	-	asmbl_35035,asmbl_35036,asmbl_35038	none	STRG.28453.1,STRG.28453.2,STRG.28453.3,blat.proc3829901.chain_1595,blat.proc3829901.chain_1598	5	STRG.28453.4,blat.proc3829901.chain_1596	2
scaffold_13	alt_acceptor	663555	663556	-	asmbl_9328	none	STRG.15439.1,Trinity_GG_25669_c0_g1_i3,blat.proc3829895.chain_178	3	STRG.15439.2,Trinity_GG_25669_c0_g1_i4,Trinity_GG_25669_c0_g1_i5,blat.proc3829895.chain_176,blat.proc3829895.chain_177	5
scaffold_12	alt_acceptor	13029847	13029848	-	asmbl_8034,asmbl_8036	none	STRG.15173.2,blat.proc3829893.chain_3570	2	STRG.15173.1,STRG.15173.3,blat.proc3829893.chain_3571	3
scaffold_22	starts_in_intron	4581465	4581465	+	asmbl_29321	none	Trinity_GG_13741_c0_g1_i1,blat.proc3829883.chain_1896	2	STRG.24871.1,STRG.24871.2,blat.proc3829883.chain_1895,blat.proc3829883.chain_1897,blat.proc3829883.chain_1898	5
scaffold_27	starts_in_intron	4000536	4000536	+	asmbl_36212	none	STRG.28848.3	1	STRG.28848.2,Trinity_GG_15970_c0_g1_i5,blat.proc3829885.chain_1937,blat.proc3829885.chain_1938,blat.proc3829885.chain_1939	5
scaffold_6	alt_acceptor	13709426	13709427	-	asmbl_48876	none	STRG.8114.2	1	STRG.8114.1,blat.proc3829891.chain_425,blat.proc3829891.chain_426	3
scaffold_11	alt_acceptor	13099429	13099430	+	asmbl_5997,asmbl_5998,asmbl_5999,asmbl_6000,asmbl_6001	none	STRG.14176.1,Trinity_GG_7823_c0_g1_i6,blat.proc3829877.chain_2666,blat.proc3829877.chain_2669,blat.proc3829877.chain_2670,blat.proc3829877.chain_2671,blat.proc3829877.chain_2672,blat.proc3829877.chain_2676	8	STRG.14176.2,STRG.14176.3,STRG.14176.4,blat.proc3829877.chain_2673,blat.proc3829877.chain_2674,blat.proc3829877.chain_2675,blat.proc3829877.chain_2677,blat.proc3829877.chain_2678	8
scaffold_5	ends_in_intron	15418209	15418209	-	asmbl_46051	none	Trinity_GG_20797_c0_g1_i2,blat.proc3829889.chain_2797	2	STRG.6723.1,STRG.6723.3,blat.proc3829889.chain_2796	3
scaffold_11	retained_intron	2833544	2833641	+	asmbl_5340	none	blat.proc3829877.chain_1886	1	STRG.13398.1,Trinity_GG_7355_c0_g1_i1,blat.proc3829877.chain_1884,blat.proc3829877.chain_1885	4
scaffold_2	retained_intron	6766622	6768034	+	asmbl_24518,asmbl_24520,asmbl_24522,asmbl_24526	none	Trinity_GG_1102_c0_g1_i11,Trinity_GG_1102_c0_g1_i5,Trinity_GG_1102_c0_g1_i7,Trinity_GG_1102_c0_g1_i8,blat.proc3829871.chain_2005,blat.proc3829871.chain_2009,blat.proc3829871.chain_2010,blat.proc3829871.chain_2012	8	STRG.2035.1,Trinity_GG_1102_c0_g1_i1,Trinity_GG_1102_c0_g1_i2,blat.proc3829871.chain_2008,blat.proc3829871.chain_2011	5
scaffold_5	spliced_intron	10253401	10253602	-	asmbl_45713,asmbl_45715	none	STRG.6319.1,blat.proc3829889.chain_2330,blat.proc3829889.chain_2332	3	STRG.6319.2,blat.proc3829889.chain_2331,blat.proc3829889.chain_2333	3
scaffold_6	retained_intron	3779018	3779105	+	asmbl_46798	none	STRG.7368.2,blat.proc3829873.chain_3517	2	STRG.7368.1,STRG.7368.4,blat.proc3829873.chain_3516,blat.proc3829873.chain_3519	4
scaffold_15	alt_acceptor	4095505	4095506	+	asmbl_14061	none	STRG.18140.2,blat.proc3829879.chain_2785	2	STRG.18140.1,blat.proc3829879.chain_2787	2
scaffold_21	retained_intron	730676	730999	+	asmbl_28311	none	STRG.23754.3,Trinity_GG_13126_c0_g3_i1,blat.proc3829883.chain_855	3	STRG.23754.4	1
scaffold_5	alt_donor	8763952	8763953	-	asmbl_45619	none	STRG.6204.2,Trinity_GG_20507_c0_g1_i1,blat.proc3829889.chain_2287	3	Trinity_GG_20507_c0_g1_i3,blat.proc3829889.chain_2290	2
scaffold_5	starts_in_intron	18698885	18698885	-	asmbl_46231	none	Trinity_GG_20913_c1_g1_i2,blat.proc3829889.chain_2986	2	STRG.6987.1,STRG.6987.2,STRG.6987.3,Trinity_GG_20913_c1_g1_i1,blat.proc3829889.chain_2985	5
scaffold_5	retained_intron	18255195	18255273	+	asmbl_44889	none	Trinity_GG_3839_c0_g1_i4,blat.proc3829873.chain_3129	2	STRG.6952.1,Trinity_GG_3839_c0_g1_i2,blat.proc3829873.chain_3127	3
scaffold_19	alt_acceptor	12398769	12398770	-	asmbl_21691,asmbl_21693	none	STRG.22557.1,blat.proc3829897.chain_3269,blat.proc3829897.chain_3270	3	STRG.22557.2,STRG.22557.3,blat.proc3829897.chain_3268,blat.proc3829897.chain_3271,blat.proc3829897.chain_3272	5
scaffold_8	alt_donor	15150580	15150581	-	asmbl_53329	none	STRG.10536.2	1	STRG.10536.1,blat.proc3829891.chain_2682	2
scaffold_4	alt_donor	13195175	13195176	-	asmbl_41729,asmbl_41730	none	STRG.4959.1,STRG.4959.3,blat.proc3829889.chain_1015,blat.proc3829889.chain_1016	4	STRG.4959.2,blat.proc3829889.chain_1014	2
scaffold_17	retained_intron	9453670	9453880	+	asmbl_18212,asmbl_18214	none	STRG.20557.2,Trinity_GG_11275_c0_g1_i3,blat.proc3829881.chain_1393	3	STRG.20557.3,STRG.20557.4,Trinity_GG_11275_c0_g1_i7,blat.proc3829881.chain_1395	4
scaffold_13	retained_intron	14155681	14155792	+	asmbl_11404	none	Trinity_GG_9078_c0_g1_i5,blat.proc3829879.chain_1229	2	blat.proc3829879.chain_1227	1
scaffold_2	starts_in_intron	3903441	3903441	-	asmbl_23045	none	blat.proc3829887.chain_1667	1	STRG.1832.1,blat.proc3829887.chain_1668	2
scaffold_3	retained_intron	13160942	13161070	+	asmbl_40384	none	blat.proc3829873.chain_37	1	STRG.3678.1,STRG.3678.2,STRG.3678.3,STRG.3678.4,blat.proc3829873.chain_36,blat.proc3829873.chain_39	6
scaffold_4	alt_acceptor	4113453	4113454	-	asmbl_41222,asmbl_41224,asmbl_41225,asmbl_41226	none	STRG.4314.1,blat.proc3829889.chain_373,blat.proc3829889.chain_375,blat.proc3829889.chain_376,blat.proc3829889.chain_378	5	blat.proc3829889.chain_377	1
scaffold_20	retained_intron	7468719	7468963	-	asmbl_26827,asmbl_26828,asmbl_26830	none	blat.proc3829899.chain_389,blat.proc3829899.chain_391,blat.proc3829899.chain_396	3	STRG.23308.1,blat.proc3829899.chain_394,blat.proc3829899.chain_399,blat.proc3829899.chain_401	4
scaffold_5	retained_exon	15017060	15017204	+	asmbl_44640	none	STRG.6683.1,Trinity_GG_3608_c0_g1_i1	2	STRG.6683.2,Trinity_GG_3608_c0_g1_i2	2
scaffold_17	retained_intron	8158916	8159004	+	asmbl_18069	none	blat.proc3829881.chain_1185	1	STRG.20421.1,STRG.20421.2,blat.proc3829881.chain_1184	3
scaffold_4	alt_donor	105496	105497	-	asmbl_41044	none	Trinity_GG_19304_c1_g1_i4,blat.proc3829889.chain_226	2	STRG.4109.1,blat.proc3829889.chain_228	2
scaffold_14	skipped_exon	3225324	3226535	+	asmbl_11899,asmbl_11901	none	STRG.16895.2,STRG.16895.3	2	STRG.16895.1	1
scaffold_12	alt_donor	12285561	12285562	-	asmbl_7983	none	STRG.15111.3	1	STRG.15111.1,blat.proc3829893.chain_3508,blat.proc3829893.chain_3509	3
scaffold_1	alt_acceptor	21931435	21931436	-	asmbl_1226	none	STRG.1472.2	1	STRG.1472.1	1
scaffold_4	alt_donor	667471	667472	-	asmbl_41082	none	STRG.4146.1	1	STRG.4146.4	1
scaffold_22	retained_intron	9340091	9340165	-	asmbl_30301	none	STRG.25263.1,blat.proc3829899.chain_2276	2	STRG.25263.2	1
scaffold_18	skipped_exon	13113219	13113865	+	asmbl_21013,asmbl_21015	none	STRG.21741.2,blat.proc3829881.chain_2715,blat.proc3829881.chain_2717	3	STRG.21741.1,STRG.21741.3,blat.proc3829881.chain_2716	3
scaffold_11	alt_donor	2101161	2101162	-	asmbl_6452	none	STRG.13364.2,blat.proc3829893.chain_1825	2	STRG.13364.1,blat.proc3829893.chain_1824,blat.proc3829893.chain_1827	3
scaffold_16	alternate_exon	812837	813087	-	asmbl_16085	none	STRG.19048.1	1	STRG.19048.2,STRG.19048.3,blat.proc3829897.chain_1	3
scaffold_5	retained_intron	19031727	19031895	-	asmbl_46264	none	STRG.7018.6,blat.proc3829889.chain_3007	2	STRG.7018.4,blat.proc3829889.chain_3003,blat.proc3829889.chain_3006	3
scaffold_28	retained_exon	7229350	7229926	+	asmbl_38335	none	STRG.29765.1,blat.proc3829885.chain_2860	2	STRG.29765.2	1
scaffold_6	alt_acceptor	17523321	17523322	+	asmbl_47702	none	STRG.8451.3	1	STRG.8451.1,STRG.8451.2,Trinity_GG_4648_c1_g1_i1,Trinity_GG_4648_c1_g1_i4,blat.proc3829875.chain_841,blat.proc3829875.chain_842,blat.proc3829875.chain_843	7
scaffold_11	alternate_exon	8375141	8376839	-	asmbl_6845	none	STRG.13838.2	1	STRG.13838.1	1
scaffold_23	spliced_intron	8004144	8004189	+	asmbl_31049	none	STRG.26093.3	1	Trinity_GG_14415_c0_g1_i1,Trinity_GG_14415_c0_g1_i2,blat.proc3829883.chain_2997	3
scaffold_16	starts_in_intron	5947052	5947052	+	asmbl_17031	none	STRG.19316.2,Trinity_GG_10550_c0_g1_i2,blat.proc3829881.chain_117	3	STRG.19316.1,blat.proc3829881.chain_116	2
scaffold_13	retained_intron	2272160	2272772	-	asmbl_9403,asmbl_9404,asmbl_9405	none	blat.proc3829895.chain_308,blat.proc3829895.chain_310,blat.proc3829895.chain_317	3	STRG.15533.1,STRG.15533.2,STRG.15533.3,Trinity_GG_25734_c0_g1_i5,blat.proc3829895.chain_309,blat.proc3829895.chain_311,blat.proc3829895.chain_312,blat.proc3829895.chain_313,blat.proc3829895.chain_316	9
scaffold_10	starts_in_intron	7110770	7110770	+	asmbl_4544	none	STRG.12521.4,blat.proc3829877.chain_1095	2	STRG.12521.1,STRG.12521.2,blat.proc3829877.chain_1092,blat.proc3829877.chain_1094	4
scaffold_23	alt_donor	8811513	8811514	+	asmbl_31080	none	blat.proc3829883.chain_3037	1	STRG.26127.1,blat.proc3829883.chain_3036	2
scaffold_28	alt_acceptor	3167309	3167310	+	asmbl_38145	none	STRG.29506.2	1	STRG.29506.1	1
scaffold_22	alt_acceptor	4873840	4873841	-	asmbl_30047	none	STRG.24898.3,blat.proc3829899.chain_1917	2	STRG.24898.1,STRG.24898.2,blat.proc3829899.chain_1915,blat.proc3829899.chain_1916	4
scaffold_3	skipped_exon	2951793	2952785	+	asmbl_39883	none	STRG.3052.2	1	STRG.3052.1	1
scaffold_12	alternate_exon	4786167	4786331	-	asmbl_7583,asmbl_7588	none	STRG.14646.2,blat.proc3829893.chain_3017,blat.proc3829893.chain_3018	3	STRG.14646.1,STRG.14646.3,STRG.14646.4,blat.proc3829893.chain_3019,blat.proc3829893.chain_3022,blat.proc3829893.chain_3023,blat.proc3829893.chain_3025	7
scaffold_7	retained_exon	18771697	18771705	-	asmbl_50322	none	blat.proc3829891.chain_1879	1	blat.proc3829891.chain_1876	1
scaffold_2135	starts_in_intron	1152	1152	+	asmbl_29059	none	Trinity_GG_30686_c1_g1_i1	1	STRG.30689.1	1
scaffold_4	starts_in_intron	18916223	18916223	+	asmbl_43460	none	STRG.5468.2	1	STRG.5468.1,blat.proc3829873.chain_1700	2
scaffold_12	alt_donor	16316169	16316170	-	asmbl_8256,asmbl_8260	none	STRG.15369.2,blat.proc3829895.chain_114	2	STRG.15369.1,blat.proc3829895.chain_112	2
scaffold_18	alt_donor	13654441	13654442	-	asmbl_20206,asmbl_20208	none	STRG.21788.1,blat.proc3829897.chain_2559,blat.proc3829897.chain_2560	3	STRG.21788.2	1
scaffold_5	retained_exon	6289561	6289653	+	asmbl_44081	none	STRG.6032.1	1	STRG.6032.2	1
scaffold_3	alt_donor	12577576	12577577	+	asmbl_40364	none	STRG.3651.1,blat.proc3829873.chain_67	2	blat.proc3829873.chain_68	1
scaffold_3	retained_exon	14774933	14775076	-	asmbl_39371	none	STRG.3820.1,blat.proc3829887.chain_3625	2	STRG.3820.3	1
scaffold_7	alt_donor	12452391	12452392	-	asmbl_50039	none	blat.proc3829891.chain_1611	1	STRG.9342.4	1
scaffold_4	alt_donor	16481262	16481263	-	asmbl_41926,asmbl_41933	none	STRG.5226.1,blat.proc3829889.chain_1289,blat.proc3829889.chain_1290	3	STRG.5226.3,Trinity_GG_19942_c0_g2_i1,blat.proc3829889.chain_1291,blat.proc3829889.chain_1292	4
scaffold_8	alt_donor	15152798	15152799	+	asmbl_52378	none	STRG.10537.2,blat.proc3829875.chain_2991	2	STRG.10537.1,blat.proc3829875.chain_2990	2
scaffold_20	starts_in_intron	1536377	1536377	+	asmbl_25577	none	STRG.22861.2	1	STRG.22861.1	1
scaffold_9	ends_in_intron	3666107	3666107	+	asmbl_53891	none	Trinity_GG_6100_c0_g1_i1	1	STRG.10962.3,blat.proc3829875.chain_3441	2
scaffold_23	spliced_intron	6291131	6291893	-	asmbl_31687,asmbl_31692,asmbl_31693	none	STRG.25954.1,Trinity_GG_31552_c0_g1_i2,Trinity_GG_31552_c0_g1_i5,blat.proc3829899.chain_3101,blat.proc3829899.chain_3104,blat.proc3829899.chain_3107	6	STRG.25954.2,Trinity_GG_31552_c0_g1_i3,Trinity_GG_31552_c0_g1_i4,Trinity_GG_31552_c0_g1_i6,Trinity_GG_31552_c0_g1_i7,blat.proc3829899.chain_3102,blat.proc3829899.chain_3103,blat.proc3829899.chain_3105,blat.proc3829899.chain_3106	9
scaffold_8	ends_in_intron	18458309	18458309	-	asmbl_53559	none	blat.proc3829891.chain_2877	1	STRG.10740.1,STRG.10740.2,blat.proc3829891.chain_2876	3
scaffold_10	spliced_intron	12895228	12895356	-	asmbl_3742,asmbl_3743	none	STRG.12877.1,blat.proc3829893.chain_1336,blat.proc3829893.chain_1339	3	blat.proc3829893.chain_1337	1
scaffold_12	spliced_intron	15213364	15213677	+	asmbl_9077,asmbl_9078,asmbl_9079	none	STRG.15307.1,STRG.15307.3,Trinity_GG_8383_c0_g1_i2,Trinity_GG_8383_c0_g1_i3,Trinity_GG_8383_c0_g1_i4,blat.proc3829877.chain_3663,blat.proc3829877.chain_3664,blat.proc3829877.chain_3665	8	STRG.15307.2,Trinity_GG_8383_c0_g1_i1,blat.proc3829877.chain_3666	3
scaffold_2	alt_acceptor	168567	168568	+	asmbl_24095,asmbl_24096,asmbl_24097	none	STRG.1523.1,blat.proc3829871.chain_1595,blat.proc3829871.chain_1597,blat.proc3829871.chain_1599	4	STRG.1523.2	1
scaffold_13	starts_in_intron	11581541	11581541	+	asmbl_11268	none	blat.proc3829879.chain_1065	1	STRG.16293.1,STRG.16293.2,STRG.16293.3,blat.proc3829879.chain_1061,blat.proc3829879.chain_1062,blat.proc3829879.chain_1064	6
scaffold_7	retained_exon	17732526	17732588	+	asmbl_51375	none	STRG.9609.1,blat.proc3829875.chain_2072	2	blat.proc3829875.chain_2074	1
scaffold_2	starts_in_intron	8862029	8862029	+	asmbl_24685	none	STRG.2147.2,Trinity_GG_1210_c0_g1_i4,blat.proc3829871.chain_2252	3	STRG.2147.1,blat.proc3829871.chain_2253,blat.proc3829871.chain_2255,blat.proc3829871.chain_2256	4
scaffold_6	retained_intron	3055244	3055748	+	asmbl_46748,asmbl_46750,asmbl_46752	none	blat.proc3829873.chain_3441,blat.proc3829873.chain_3444,blat.proc3829873.chain_3446	3	STRG.7308.2,blat.proc3829873.chain_3440,blat.proc3829873.chain_3443,blat.proc3829873.chain_3445	4
scaffold_27	retained_exon	1729172	1729204	-	asmbl_36735	none	STRG.28641.1,blat.proc3829901.chain_1841	2	STRG.28641.2,blat.proc3829901.chain_1840	2
scaffold_6	alt_donor	17883684	17883685	-	asmbl_49151	none	STRG.8474.3	1	STRG.8474.1,STRG.8474.4,Trinity_GG_21830_c0_g1_i2,blat.proc3829891.chain_767	4
scaffold_12	retained_intron	4788054	4789011	-	asmbl_7579,asmbl_7580	none	STRG.14646.3,STRG.14646.6,Trinity_GG_25172_c1_g1_i1,blat.proc3829893.chain_3026	4	STRG.14646.4,blat.proc3829893.chain_3025	2
scaffold_24	spliced_intron	10779344	10779463	-	asmbl_33210,asmbl_33211,asmbl_33214	none	STRG.27021.1,blat.proc3829901.chain_292,blat.proc3829901.chain_294,blat.proc3829901.chain_296	4	blat.proc3829901.chain_293	1
scaffold_22	spliced_intron	4287947	4288162	-	asmbl_30000,asmbl_30003,asmbl_30007	none	STRG.24837.1,STRG.24837.6,blat.proc3829899.chain_1955,blat.proc3829899.chain_1956	4	STRG.24837.5,blat.proc3829899.chain_1953	2
scaffold_21	starts_in_intron	6535326	6535326	+	asmbl_28684,asmbl_28685	none	blat.proc3829883.chain_1321,blat.proc3829883.chain_1324	2	STRG.24166.1,STRG.24166.2,blat.proc3829883.chain_1322	3
scaffold_12	retained_intron	12288119	12288532	-	asmbl_7986	none	STRG.15114.1	1	STRG.15114.2,STRG.15114.3,STRG.15114.4,STRG.15114.6	4
scaffold_2	alternate_exon	6512406	6512496	-	asmbl_23235	none	Trinity_GG_18148_c0_g1_i2,blat.proc3829887.chain_1933	2	STRG.2013.1,STRG.2013.2,blat.proc3829887.chain_1931,blat.proc3829887.chain_1932	4
scaffold_9	spliced_intron	16568288	16568413	+	asmbl_54574,asmbl_54576,asmbl_54577,asmbl_54578,asmbl_54579	none	STRG.11798.1,Trinity_GG_6586_c0_g1_i14,Trinity_GG_6586_c0_g1_i15,Trinity_GG_6586_c0_g1_i21,Trinity_GG_6586_c0_g1_i5,blat.proc3829877.chain_554,blat.proc3829877.chain_556,blat.proc3829877.chain_557,blat.proc3829877.chain_558	9	Trinity_GG_6586_c0_g1_i10,Trinity_GG_6586_c0_g1_i23,blat.proc3829877.chain_552,blat.proc3829877.chain_555	4
scaffold_16	spliced_intron	810291	810378	-	asmbl_16077,asmbl_16078,asmbl_16080,asmbl_16081	none	STRG.19052.1,STRG.19052.2,STRG.19052.3,blat.proc3829895.chain_3747,blat.proc3829895.chain_3749	5	STRG.19052.4,blat.proc3829895.chain_3746,blat.proc3829895.chain_3748	3
scaffold_9	starts_in_intron	2504042	2504042	+	asmbl_53825,asmbl_53826	none	STRG.10893.3,blat.proc3829875.chain_3346	2	STRG.10893.1,STRG.10893.2,blat.proc3829875.chain_3347	3
scaffold_16	retained_exon	6144401	6144542	+	asmbl_17069,asmbl_17076,asmbl_17077	none	STRG.19342.1,STRG.19342.3,STRG.19342.4	3	STRG.19342.2,blat.proc3829881.chain_208,blat.proc3829881.chain_209,blat.proc3829881.chain_210,blat.proc3829881.chain_212,blat.proc3829881.chain_214	6
scaffold_23	ends_in_intron	1430747	1430747	-	asmbl_31365	none	STRG.25597.2,Trinity_GG_31268_c1_g1_i1,blat.proc3829899.chain_2594	3	STRG.25597.1	1
scaffold_27	retained_exon	6196555	6196599	+	asmbl_36335,asmbl_36336	none	STRG.28993.1,STRG.28993.4	2	STRG.28993.3	1
scaffold_3	retained_exon	18376956	18377274	-	asmbl_39568	none	STRG.4042.1,blat.proc3829889.chain_111	2	STRG.4042.2	1
scaffold_4	alt_donor	18758288	18758289	-	asmbl_42137	none	STRG.5464.1	1	STRG.5464.3	1
scaffold_11	skipped_exon	11943634	11944952	-	asmbl_7020	none	STRG.14160.1	1	STRG.14160.2,STRG.14160.3,STRG.14160.4,STRG.14160.5,STRG.14160.6,blat.proc3829893.chain_2558	6
scaffold_2	alternate_exon	6900682	6901009	+	asmbl_24543	none	STRG.2036.4	1	STRG.2036.2,STRG.2036.6,Trinity_GG_1103_c0_g1_i2,blat.proc3829871.chain_2015,blat.proc3829871.chain_2020,blat.proc3829871.chain_2022	6
scaffold_9	ends_in_intron	5277695	5277695	+	asmbl_54003	none	blat.proc3829875.chain_3590	1	STRG.11095.1	1
scaffold_1	ends_in_intron	11176337	11176337	+	asmbl_2077	none	blat.proc3829871.chain_818	1	STRG.743.1,STRG.743.2,STRG.743.3,STRG.743.4,STRG.743.5,blat.proc3829871.chain_815,blat.proc3829871.chain_820,blat.proc3829871.chain_821,blat.proc3829871.chain_824,blat.proc3829871.chain_825	10
scaffold_21	starts_in_intron	8131921	8131921	-	asmbl_27909	none	STRG.24334.1,blat.proc3829899.chain_1391	2	STRG.24334.5,blat.proc3829899.chain_1382,blat.proc3829899.chain_1383,blat.proc3829899.chain_1385,blat.proc3829899.chain_1387	5
scaffold_22	alternate_exon	7438823	7438863	+	asmbl_29476	none	STRG.25067.1	1	STRG.25067.2,STRG.25067.3,blat.proc3829883.chain_2138	3
scaffold_5	skipped_exon	236613	238629	-	asmbl_45152	none	STRG.5594.3	1	STRG.5594.1,STRG.5594.2,STRG.5594.4,Trinity_GG_20172_c0_g1_i1,blat.proc3829889.chain_1710	5
scaffold_15	retained_intron	12597437	12597600	-	asmbl_15605,asmbl_15606	none	Trinity_GG_27520_c0_g1_i4,Trinity_GG_27520_c0_g1_i7,blat.proc3829895.chain_3476,blat.proc3829895.chain_3482	4	STRG.18702.1,Trinity_GG_27520_c0_g1_i3,Trinity_GG_27520_c0_g1_i5,blat.proc3829895.chain_3478,blat.proc3829895.chain_3479,blat.proc3829895.chain_3481	6
scaffold_8	alt_donor	11263866	11263867	-	asmbl_53135	none	STRG.10328.2,blat.proc3829891.chain_2473	2	STRG.10328.1	1
scaffold_28	spliced_intron	3968426	3968455	+	asmbl_38203	none	STRG.29577.2	1	STRG.29577.1	1
scaffold_2	alt_acceptor	13052789	13052790	+	asmbl_24841	none	STRG.2328.1,blat.proc3829871.chain_2429	2	STRG.2328.2,blat.proc3829871.chain_2428	2
scaffold_5	starts_in_intron	8541718	8541718	-	asmbl_45593,asmbl_45594,asmbl_45595	none	blat.proc3829889.chain_2255	1	STRG.6191.1,STRG.6191.3,STRG.6191.4,blat.proc3829889.chain_2246,blat.proc3829889.chain_2250	5
scaffold_2	spliced_intron	5391853	5391989	-	asmbl_23173	none	STRG.1948.1,blat.proc3829887.chain_1757	2	blat.proc3829887.chain_1756	1
scaffold_25	retained_intron	3820300	3820402	-	asmbl_34142	none	Trinity_GG_32309_c0_g1_i1,blat.proc3829901.chain_621	2	STRG.27321.1,STRG.27321.2,Trinity_GG_32309_c0_g1_i2,blat.proc3829901.chain_622	4
scaffold_10	starts_in_intron	11873582	11873582	+	asmbl_4775	none	Trinity_GG_7045_c0_g1_i3,blat.proc3829877.chain_1348	2	STRG.12819.1,blat.proc3829877.chain_1349	2
scaffold_21	alt_acceptor	11992127	11992128	-	asmbl_28170	none	STRG.24637.2	1	STRG.24637.1,Trinity_GG_30779_c0_g1_i1,blat.proc3829899.chain_1753	3
scaffold_7	alt_acceptor	4498625	4498626	-	asmbl_49681	none	blat.proc3829891.chain_1192	1	STRG.8813.1,STRG.8813.2,Trinity_GG_22050_c0_g1_i4,blat.proc3829891.chain_1190,blat.proc3829891.chain_1191,blat.proc3829891.chain_1193	6
scaffold_5	alt_donor	6933262	6933263	+	asmbl_44129	none	blat.proc3829873.chain_2155	1	STRG.6099.1,blat.proc3829873.chain_2156	2
scaffold_5	alt_donor	10163602	10163603	+	asmbl_44329	none	STRG.6309.2,blat.proc3829873.chain_2448	2	STRG.6309.3,blat.proc3829873.chain_2449	2
scaffold_13	retained_intron	381874	382053	-	asmbl_9293,asmbl_9294	none	STRG.15421.2,blat.proc3829895.chain_151	2	STRG.15421.1,STRG.15421.3,blat.proc3829895.chain_149	3
scaffold_6	spliced_intron	7937253	7938427	-	asmbl_48448,asmbl_48451,asmbl_48452	none	STRG.7666.2,STRG.7666.3,blat.proc3829889.chain_3704	3	STRG.7666.1,blat.proc3829889.chain_3701,blat.proc3829889.chain_3702,blat.proc3829889.chain_3703,blat.proc3829889.chain_3705,blat.proc3829889.chain_3706	6
scaffold_20	retained_intron	11672168	11672271	-	asmbl_27100	none	STRG.23656.2,blat.proc3829899.chain_654	2	STRG.23656.4,blat.proc3829899.chain_653	2
scaffold_5	alt_acceptor	6733174	6733175	+	asmbl_44110,asmbl_44111	none	STRG.6071.1,STRG.6071.2,blat.proc3829873.chain_2241,blat.proc3829873.chain_2242	4	STRG.6071.3	1
scaffold_7	alt_donor	18771327	18771328	-	asmbl_50321	none	blat.proc3829891.chain_1877	1	blat.proc3829891.chain_1876,blat.proc3829891.chain_1879	2
scaffold_10	alt_donor	1073921	1073922	-	asmbl_2956	none	STRG.11982.1	1	STRG.11982.2	1
scaffold_12	alternate_exon	9229699	9229748	-	asmbl_7783	none	STRG.14910.1,blat.proc3829893.chain_3310	2	STRG.14910.2	1
scaffold_2	spliced_intron	14193694	14193809	-	asmbl_23582,asmbl_23583,asmbl_23584,asmbl_23585	none	blat.proc3829887.chain_2207,blat.proc3829887.chain_2208,blat.proc3829887.chain_2209,blat.proc3829887.chain_2210	4	STRG.2417.1,blat.proc3829887.chain_2212	2
scaffold_4	alt_donor	13587800	13587801	+	asmbl_43136,asmbl_43138	none	STRG.4984.3,blat.proc3829873.chain_1241,blat.proc3829873.chain_1242	3	STRG.4984.1,STRG.4984.2	2
scaffold_22	starts_in_intron	7120713	7120713	+	asmbl_29450,asmbl_29451	none	Trinity_GG_13867_c0_g1_i2,Trinity_GG_13867_c0_g1_i3,blat.proc3829883.chain_2118,blat.proc3829883.chain_2119	4	STRG.25032.1,STRG.25032.2,blat.proc3829883.chain_2115,blat.proc3829883.chain_2116	4
scaffold_16	spliced_intron	10441689	10441848	+	asmbl_17333	none	STRG.19601.3	1	Trinity_GG_10746_c0_g1_i2,blat.proc3829881.chain_487	2
scaffold_6	spliced_intron	7849656	7849695	+	asmbl_47022	none	STRG.7662.2	1	STRG.7662.5	1
scaffold_9	spliced_intron	17456173	17456492	-	asmbl_55606	none	STRG.11831.2,blat.proc3829893.chain_236	2	STRG.11831.1,Trinity_GG_23567_c0_g1_i4,blat.proc3829893.chain_235,blat.proc3829893.chain_237	4
scaffold_1	spliced_intron	1608748	1608955	-	asmbl_81	none	blat.proc3829887.chain_22	1	Trinity_GG_17079_c0_g1_i2,blat.proc3829887.chain_23	2
scaffold_11	starts_in_intron	13649131	13649131	-	asmbl_7127	none	blat.proc3829893.chain_2582	1	STRG.14211.1,STRG.14211.2,blat.proc3829893.chain_2581,blat.proc3829893.chain_2584	4
scaffold_1	skipped_exon	849299	849972	+	asmbl_1415	none	STRG.41.1,Trinity_GG_29_c0_g1_i2,blat.proc3829871.chain_52	3	STRG.41.2,Trinity_GG_29_c0_g1_i1,blat.proc3829871.chain_50	3
scaffold_22	retained_intron	4225894	4226332	-	asmbl_29977,asmbl_29986,asmbl_29988	none	STRG.24838.1,blat.proc3829899.chain_1975,blat.proc3829899.chain_1976	3	STRG.24838.2,STRG.24838.3,STRG.24838.4,blat.proc3829899.chain_1977	4
scaffold_23	retained_exon	5618925	5619884	-	asmbl_31646,asmbl_31648	none	STRG.25917.2,blat.proc3829899.chain_3024,blat.proc3829899.chain_3026	3	STRG.25917.4,Trinity_GG_31507_c0_g2_i3,blat.proc3829899.chain_3027	3
scaffold_19	spliced_intron	9456754	9457176	+	asmbl_22395	none	Trinity_GG_12370_c1_g1_i1,blat.proc3829881.chain_3307	2	STRG.22365.4,Trinity_GG_12370_c1_g1_i4,blat.proc3829881.chain_3305	3
scaffold_19	retained_intron	9534078	9534340	+	asmbl_22412	none	STRG.22379.2,blat.proc3829881.chain_3227	2	STRG.22379.1,blat.proc3829881.chain_3228	2
scaffold_6	skipped_exon	2484045	2485297	+	asmbl_46701,asmbl_46705	none	STRG.7239.1,blat.proc3829873.chain_3414	2	STRG.7239.3,blat.proc3829873.chain_3416	2
scaffold_24	starts_in_intron	7610103	7610103	-	asmbl_33025	none	blat.proc3829901.chain_84	1	STRG.26775.1	1
scaffold_15	spliced_intron	15414145	15414286	+	asmbl_14732,asmbl_14735,asmbl_14737	none	STRG.18922.6,blat.proc3829879.chain_3550,blat.proc3829879.chain_3557	3	STRG.18922.1,STRG.18922.2,STRG.18922.4,blat.proc3829879.chain_3552,blat.proc3829879.chain_3556	5
scaffold_9	skipped_exon	8395341	8395973	+	asmbl_54157	none	STRG.11249.1,blat.proc3829877.chain_17	2	STRG.11249.4,blat.proc3829877.chain_18	2
scaffold_10	starts_in_intron	8464169	8464169	-	asmbl_3502	none	STRG.12592.3,blat.proc3829893.chain_1091	2	STRG.12592.1,STRG.12592.2,blat.proc3829893.chain_1092,blat.proc3829893.chain_1093	4
scaffold_27	retained_intron	3741581	3742122	-	asmbl_36873,asmbl_36875	none	STRG.28820.3,blat.proc3829901.chain_1965,blat.proc3829901.chain_1966	3	STRG.28820.1,STRG.28820.2,blat.proc3829901.chain_1967,blat.proc3829901.chain_1968	4
scaffold_23	ends_in_intron	1144678	1144678	-	asmbl_31345	none	Trinity_GG_31272_c0_g1_i8,blat.proc3829899.chain_2602	2	STRG.25575.1,blat.proc3829899.chain_2599,blat.proc3829899.chain_2600,blat.proc3829899.chain_2601,blat.proc3829899.chain_2604	5
scaffold_14	spliced_intron	2886580	2886644	-	asmbl_12962	none	STRG.16870.3,blat.proc3829895.chain_1570,blat.proc3829895.chain_1574	3	STRG.16870.1,STRG.16870.2,STRG.16870.4,blat.proc3829895.chain_1571	4
scaffold_1	starts_in_intron	1450299	1450299	-	asmbl_72	none	Trinity_GG_17021_c0_g1_i3,blat.proc3829885.chain_3667	2	STRG.88.1,blat.proc3829885.chain_3665	2
scaffold_9	starts_in_intron	1241329	1241329	+	asmbl_53789	none	Trinity_GG_5956_c0_g1_i2,blat.proc3829875.chain_3228	2	STRG.10824.1,blat.proc3829875.chain_3227	2
scaffold_10	alternate_exon	17057359	17057538	-	asmbl_3929	none	STRG.13142.3	1	STRG.13142.4,blat.proc3829893.chain_1570	2
scaffold_23	retained_intron	4315991	4316097	+	asmbl_30799	none	blat.proc3829883.chain_2718	1	STRG.25826.1,blat.proc3829883.chain_2710,blat.proc3829883.chain_2716	3
scaffold_9	starts_in_intron	17489457	17489457	-	asmbl_55613,asmbl_55615	none	STRG.11837.1,Trinity_GG_23572_c0_g1_i1,blat.proc3829893.chain_244,blat.proc3829893.chain_245	4	STRG.11837.2,blat.proc3829893.chain_246	2
scaffold_13	alt_acceptor	381535	381536	-	asmbl_9292,asmbl_9293,asmbl_9295	none	STRG.15421.3,STRG.15421.4,blat.proc3829895.chain_150,blat.proc3829895.chain_151	4	STRG.15421.1,STRG.15421.2,blat.proc3829895.chain_149	3
scaffold_6	spliced_intron	9012696	9012818	+	asmbl_47128	none	STRG.7773.1,blat.proc3829875.chain_153	2	STRG.7773.2,STRG.7773.3,blat.proc3829875.chain_152	3
scaffold_28	alternate_exon	5636362	5636800	-	asmbl_37630,asmbl_37634,asmbl_37635	none	STRG.29677.2,STRG.29677.3,STRG.29677.4,Trinity_GG_33665_c0_g1_i3,blat.proc3829901.chain_2827	5	STRG.29677.1,blat.proc3829901.chain_2822,blat.proc3829901.chain_2823,blat.proc3829901.chain_2824,blat.proc3829901.chain_2825	5
scaffold_8	spliced_intron	10793464	10793556	+	asmbl_52169	none	STRG.10300.2,blat.proc3829875.chain_2821	2	STRG.10300.1,blat.proc3829875.chain_2822	2
scaffold_11	alternate_exon	3767817	3768042	-	asmbl_6556	none	STRG.13488.2	1	STRG.13488.1,STRG.13488.3,STRG.13488.4,blat.proc3829893.chain_1962	4
scaffold_6	ends_in_intron	8741702	8741702	+	asmbl_47110	none	STRG.7748.1	1	blat.proc3829875.chain_101	1
scaffold_22	starts_in_intron	6124092	6124092	+	asmbl_29390,asmbl_29392	none	blat.proc3829883.chain_1997,blat.proc3829883.chain_1998	2	STRG.24955.1,STRG.24955.2,blat.proc3829883.chain_1996,blat.proc3829883.chain_2002	4
scaffold_25	alt_acceptor	8708706	8708707	+	asmbl_33746,asmbl_33747,asmbl_33748,asmbl_33749,asmbl_33750	none	STRG.27679.1,STRG.27679.2,STRG.27679.3,Trinity_GG_15273_c0_g1_i1,Trinity_GG_15273_c0_g1_i7,blat.proc3829885.chain_693,blat.proc3829885.chain_696	7	Trinity_GG_15273_c0_g1_i11,blat.proc3829885.chain_703	2
scaffold_15	ends_in_intron	7182608	7182608	-	asmbl_15298	none	Trinity_GG_27255_c0_g2_i1,blat.proc3829895.chain_2966	2	STRG.18300.2,blat.proc3829895.chain_2965	2
scaffold_22	spliced_intron	6131523	6131689	+	asmbl_29389,asmbl_29391,asmbl_29397	none	STRG.24955.3,blat.proc3829883.chain_2007,blat.proc3829883.chain_2009	3	STRG.24955.7	1
scaffold_27	spliced_intron	2903102	2903179	-	asmbl_36822	none	STRG.28755.2	1	STRG.28755.3,blat.proc3829901.chain_1933	2
scaffold_11	retained_intron	7924769	7925337	+	asmbl_5664	none	STRG.13793.2,Trinity_GG_7594_c0_g1_i2,blat.proc3829877.chain_2264	3	STRG.13793.3,Trinity_GG_7594_c0_g1_i4,blat.proc3829877.chain_2266	3
scaffold_12	alternate_exon	9687438	9687872	-	asmbl_7823	none	STRG.14929.5	1	STRG.14929.2,STRG.14929.4,Trinity_GG_25344_c0_g1_i1,Trinity_GG_25344_c0_g1_i5,blat.proc3829893.chain_3334,blat.proc3829893.chain_3335	6
scaffold_17	retained_exon	8355208	8355293	+	asmbl_18116	none	STRG.20446.2,blat.proc3829881.chain_1236	2	STRG.20446.1,Trinity_GG_11203_c0_g1_i1,blat.proc3829881.chain_1234	3
scaffold_28	spliced_intron	9115472	9115873	-	asmbl_37819	none	STRG.29941.1,blat.proc3829901.chain_3048	2	STRG.29941.2,blat.proc3829901.chain_3049,blat.proc3829901.chain_3050	3
scaffold_15	starts_in_intron	11943343	11943343	-	asmbl_15557,asmbl_15558	none	blat.proc3829895.chain_3336,blat.proc3829895.chain_3338	2	STRG.18626.1,STRG.18626.2,blat.proc3829895.chain_3337	3
scaffold_17	alternate_exon	6183482	6183633	-	asmbl_19010	none	STRG.20283.2	1	STRG.20283.1	1
scaffold_16	starts_in_intron	8100916	8100916	-	asmbl_16411	none	blat.proc3829897.chain_483	1	STRG.19442.1,blat.proc3829897.chain_484	2
scaffold_14	alt_acceptor	15565620	15565621	+	asmbl_12606	none	blat.proc3829879.chain_2468	1	STRG.17784.3	1
scaffold_8	spliced_intron	9122052	9122775	-	asmbl_53001	none	STRG.10160.1	1	STRG.10160.4,Trinity_GG_22689_c0_g1_i1,blat.proc3829891.chain_2329	3
scaffold_10	alternate_exon	1476639	1476679	+	asmbl_4227	none	STRG.12011.1	1	STRG.12011.2,Trinity_GG_6689_c0_g1_i1,blat.proc3829877.chain_734	3
scaffold_15	retained_exon	2566028	2566120	-	asmbl_15029,asmbl_15031,asmbl_15032	none	STRG.18037.1,STRG.18037.3,STRG.18037.5,blat.proc3829895.chain_2774,blat.proc3829895.chain_2775	5	STRG.18037.2,STRG.18037.4,blat.proc3829895.chain_2773	3
scaffold_15	starts_in_intron	145602	145602	-	asmbl_14923	none	blat.proc3829895.chain_2600	1	STRG.17865.2,blat.proc3829895.chain_2599	2
scaffold_8	starts_in_intron	6025246	6025246	+	asmbl_51914	none	blat.proc3829875.chain_2555	1	blat.proc3829875.chain_2552,blat.proc3829875.chain_2553,blat.proc3829875.chain_2557	3
scaffold_13	alternate_exon	5192058	5192137	-	asmbl_9639	none	STRG.15804.1,blat.proc3829895.chain_542	2	STRG.15804.2	1
scaffold_4	retained_intron	16481131	16481263	-	asmbl_41928,asmbl_41930,asmbl_41931	none	STRG.5226.2,Trinity_GG_19942_c0_g2_i1,Trinity_GG_19942_c0_g2_i2,blat.proc3829889.chain_1291,blat.proc3829889.chain_1293,blat.proc3829889.chain_1294	6	blat.proc3829889.chain_1290	1
scaffold_2	alt_donor	10646807	10646808	-	asmbl_23446	none	STRG.2223.1	1	STRG.2223.2	1
scaffold_17	retained_intron	3986624	3986812	-	asmbl_18878	none	Trinity_GG_28339_c2_g1_i1,blat.proc3829897.chain_1118,blat.proc3829897.chain_1120	3	STRG.20146.1,blat.proc3829897.chain_1119	2
scaffold_7	alt_acceptor	83561	83562	-	asmbl_49475	none	STRG.8578.2	1	STRG.8578.1	1
scaffold_21	ends_in_intron	6392769	6392769	+	asmbl_28650	none	STRG.24152.3,Trinity_GG_13325_c4_g1_i1,blat.proc3829883.chain_1204	3	blat.proc3829883.chain_1200,blat.proc3829883.chain_1201	2
scaffold_24	skipped_exon	6783805	6785132	-	asmbl_32964	none	STRG.26713.3	1	STRG.26713.1,STRG.26713.2,STRG.26713.4	3
scaffold_9	alt_donor	14819579	14819580	-	asmbl_55465,asmbl_55466,asmbl_55468	none	STRG.11693.2,STRG.11693.7,blat.proc3829893.chain_8	3	STRG.11693.1,Trinity_GG_23432_c0_g1_i1,blat.proc3829893.chain_10,blat.proc3829893.chain_4	4
scaffold_8	spliced_intron	11279257	11280686	-	asmbl_53141,asmbl_53142,asmbl_53145	none	STRG.10339.2,STRG.10339.3,blat.proc3829891.chain_2438,blat.proc3829891.chain_2440	4	STRG.10339.1,STRG.10339.4,blat.proc3829891.chain_2439	3
scaffold_94	retained_intron	11162	11400	+	asmbl_55805	none	Trinity_GG_16686_c0_g1_i2,blat.proc3829885.chain_3178,blat.proc3829901.chain_3159	3	Trinity_GG_16638_c0_g1_i1,blat.proc3829885.chain_3117	2
scaffold_8	spliced_intron	17815077	17815245	+	asmbl_52498,asmbl_52499,asmbl_52505	none	STRG.10687.1,STRG.10687.2,Trinity_GG_5905_c0_g1_i4,Trinity_GG_5905_c0_g1_i7,blat.proc3829875.chain_3120,blat.proc3829875.chain_3121,blat.proc3829875.chain_3123	7	blat.proc3829875.chain_3119,blat.proc3829875.chain_3124	2
scaffold_24	skipped_exon	4280160	4281253	+	asmbl_32192	none	STRG.26568.3	1	STRG.26568.1,blat.proc3829883.chain_3466	2
scaffold_7	starts_in_intron	18762283	18762283	-	asmbl_50317	none	STRG.9676.1,blat.proc3829891.chain_1926	2	STRG.9676.2	1
scaffold_9	alternate_exon	649648	650300	+	asmbl_53765	none	STRG.10787.4,Trinity_GG_5998_c1_g1_i1,blat.proc3829875.chain_3295,blat.proc3829875.chain_3296	4	STRG.10787.1,STRG.10787.2,blat.proc3829875.chain_3294	3
scaffold_20	retained_intron	1489870	1489939	+	asmbl_25574	none	STRG.22855.1	1	STRG.22855.2,STRG.22855.3,STRG.22855.5	3
scaffold_15	alternate_exon	2782678	2782814	-	asmbl_15057	none	STRG.18054.3	1	STRG.18054.1	1
scaffold_40	retained_intron	26688	26808	+	asmbl_43642	none	STRG.30017.1,Trinity_GG_16624_c0_g1_i1,blat.proc3829885.chain_3093	3	STRG.30017.2	1
scaffold_3	retained_exon	6822082	6822198	+	asmbl_40091	none	STRG.3304.1,blat.proc3829871.chain_3442	2	STRG.3304.2	1
scaffold_12	alt_donor	1727047	1727048	-	asmbl_7436	none	STRG.14458.1	1	STRG.14458.2,blat.proc3829893.chain_2854	2
scaffold_19	retained_intron	12971908	12971989	-	asmbl_21784,asmbl_21785,asmbl_21786,asmbl_21787,asmbl_21788,asmbl_21789	none	STRG.22606.2,STRG.22606.3,STRG.22606.4,STRG.22606.5,Trinity_GG_29578_c0_g1_i4,Trinity_GG_29578_c0_g1_i5,Trinity_GG_29578_c0_g1_i6,Trinity_GG_29578_c0_g1_i7,Trinity_GG_29578_c0_g1_i8,blat.proc3829897.chain_3318,blat.proc3829897.chain_3320,blat.proc3829897.chain_3321,blat.proc3829897.chain_3322,blat.proc3829897.chain_3323	14	STRG.22606.1,Trinity_GG_29578_c0_g1_i1,Trinity_GG_29578_c0_g1_i2,blat.proc3829897.chain_3324,blat.proc3829897.chain_3325	5
scaffold_6	spliced_intron	384396	384552	+	asmbl_46606	none	STRG.7091.1,blat.proc3829873.chain_3247	2	blat.proc3829873.chain_3248	1
scaffold_12	retained_exon	1056754	1057091	+	asmbl_8418,asmbl_8421	none	STRG.14436.1,STRG.14436.4,blat.proc3829877.chain_2886	3	STRG.14436.2	1
scaffold_14	alt_donor	15999893	15999894	-	asmbl_13748	none	STRG.17826.1,blat.proc3829895.chain_2487	2	STRG.17826.2	1
scaffold_5	alternate_exon	6564316	6567768	+	asmbl_44094,asmbl_44102	none	STRG.6047.1,STRG.6047.2,blat.proc3829873.chain_2179,blat.proc3829873.chain_2181	4	blat.proc3829873.chain_2180	1
scaffold_4	alternate_exon	16352771	16352886	+	asmbl_43304	none	STRG.5213.1,blat.proc3829873.chain_1517	2	STRG.5213.2	1
scaffold_11	retained_intron	7049528	7049788	+	asmbl_5611	none	Trinity_GG_7553_c0_g1_i5,blat.proc3829877.chain_2195	2	STRG.13722.2,STRG.13722.3,Trinity_GG_7553_c0_g1_i3,Trinity_GG_7553_c0_g1_i8,blat.proc3829877.chain_2193,blat.proc3829877.chain_2196	6
scaffold_13	alt_acceptor	10044688	10044689	+	asmbl_11215	none	STRG.16231.1,blat.proc3829879.chain_980	2	blat.proc3829879.chain_981	1
scaffold_16	starts_in_intron	9032700	9032700	+	asmbl_17255	none	Trinity_GG_10690_c0_g1_i6,blat.proc3829881.chain_390	2	STRG.19501.1,STRG.19501.2,STRG.19501.3,STRG.19501.4,blat.proc3829881.chain_387,blat.proc3829881.chain_388,blat.proc3829881.chain_389,blat.proc3829881.chain_391	8
scaffold_2	retained_intron	18964556	18964833	+	asmbl_25292	none	Trinity_GG_1521_c0_g1_i2,blat.proc3829871.chain_2876	2	STRG.2766.1,blat.proc3829871.chain_2877	2
scaffold_6	alternate_exon	8469914	8470296	-	asmbl_48490	none	STRG.7709.2,blat.proc3829889.chain_3645	2	STRG.7709.1,blat.proc3829889.chain_3644	2
scaffold_27	retained_intron	6258393	6258777	+	asmbl_36348	none	STRG.28995.1,blat.proc3829885.chain_2098	2	STRG.28995.3,blat.proc3829885.chain_2095	2
scaffold_19	spliced_intron	12574951	12575303	-	asmbl_21731	none	STRG.22574.1	1	blat.proc3829897.chain_3224	1
scaffold_28	retained_exon	3389756	3389854	+	asmbl_38174	none	STRG.29537.2	1	STRG.29537.1,STRG.29537.3	2
scaffold_1	retained_intron	14360102	14360228	-	asmbl_910,asmbl_914	none	Trinity_GG_17537_c0_g1_i2,blat.proc3829887.chain_885,blat.proc3829887.chain_886	3	STRG.1033.1,STRG.1033.2,STRG.1033.3,blat.proc3829887.chain_882,blat.proc3829887.chain_884,blat.proc3829887.chain_887	6
scaffold_3	ends_in_intron	16296970	16296970	+	asmbl_40579	none	blat.proc3829873.chain_241	1	STRG.3904.1,blat.proc3829873.chain_240	2
scaffold_10	ends_in_intron	3353346	3353346	-	asmbl_3109	none	Trinity_GG_23792_c0_g1_i2,blat.proc3829893.chain_612	2	STRG.12149.1,blat.proc3829893.chain_615	2
scaffold_22	ends_in_intron	4479472	4479472	+	asmbl_29302	none	Trinity_GG_13739_c0_g1_i1,blat.proc3829883.chain_1891	2	STRG.24856.1,Trinity_GG_13739_c0_g1_i2,blat.proc3829883.chain_1892	3
scaffold_4	alt_acceptor	19579607	19579608	-	asmbl_42205,asmbl_42206,asmbl_42207	none	STRG.5543.1,STRG.5543.2,blat.proc3829889.chain_1639,blat.proc3829889.chain_1640,blat.proc3829889.chain_1641	5	STRG.5543.3	1
scaffold_17	retained_exon	9827344	9827415	-	asmbl_19244,asmbl_19245	none	STRG.20586.1,STRG.20586.4,blat.proc3829897.chain_1538,blat.proc3829897.chain_1539	4	STRG.20586.2,STRG.20586.3,blat.proc3829897.chain_1537,blat.proc3829897.chain_1540	4
scaffold_7	starts_in_intron	8712041	8712041	-	asmbl_49845	none	blat.proc3829891.chain_1363	1	STRG.9102.1,STRG.9102.2,blat.proc3829891.chain_1361	3
scaffold_9	retained_exon	3374637	3374669	+	asmbl_53875	none	blat.proc3829875.chain_3402	1	STRG.10936.1,blat.proc3829875.chain_3399,blat.proc3829875.chain_3401	3
scaffold_18	spliced_intron	2148780	2149152	-	asmbl_19747	none	STRG.21102.2,blat.proc3829897.chain_2009	2	STRG.21102.1,Trinity_GG_28844_c0_g1_i1,blat.proc3829897.chain_2010	3
scaffold_9	starts_in_intron	7799827	7799827	+	asmbl_54129	none	Trinity_GG_6253_c0_g1_i12,blat.proc3829875.chain_3712	2	Trinity_GG_6253_c0_g1_i2,blat.proc3829875.chain_3706,blat.proc3829875.chain_3709,blat.proc3829875.chain_3713,blat.proc3829875.chain_3714,blat.proc3829875.chain_3715	6
scaffold_11	alt_acceptor	6591255	6591256	-	asmbl_6701	none	STRG.13693.2	1	STRG.13693.1,blat.proc3829893.chain_2138,blat.proc3829893.chain_2139	3
scaffold_16	alt_donor	4603726	4603727	+	asmbl_16982	none	STRG.19235.2	1	STRG.19235.1,blat.proc3829881.chain_67,blat.proc3829881.chain_68	3
scaffold_9	alternate_exon	15249777	15249894	+	asmbl_54526	none	STRG.11707.2,Trinity_GG_6541_c0_g1_i1,blat.proc3829877.chain_471	3	STRG.11707.1,Trinity_GG_6541_c0_g1_i2	2
scaffold_5	alt_acceptor	6278152	6278153	-	asmbl_45474	none	STRG.6029.1,blat.proc3829889.chain_2102	2	STRG.6029.2	1
scaffold_5	ends_in_intron	15792177	15792177	-	asmbl_46105	none	Trinity_GG_20808_c0_g1_i1,blat.proc3829889.chain_2823	2	STRG.6760.1,blat.proc3829889.chain_2824	2
scaffold_19	retained_exon	13195378	13195451	-	asmbl_21837	none	Trinity_GG_29598_c1_g1_i12,blat.proc3829897.chain_3371	2	STRG.22682.1,blat.proc3829897.chain_3360,blat.proc3829897.chain_3361,blat.proc3829897.chain_3363,blat.proc3829897.chain_3364,blat.proc3829897.chain_3370	6
scaffold_9	spliced_intron	6902292	6902430	-	asmbl_55047,asmbl_55048,asmbl_55049,asmbl_55051,asmbl_55052,asmbl_55053,asmbl_55054,asmbl_55056,asmbl_55057	none	STRG.11191.1,STRG.11191.2,STRG.11191.4,STRG.11191.5,blat.proc3829891.chain_3367,blat.proc3829891.chain_3368,blat.proc3829891.chain_3369,blat.proc3829891.chain_3370,blat.proc3829891.chain_3371,blat.proc3829891.chain_3372,blat.proc3829891.chain_3373,blat.proc3829891.chain_3375	12	STRG.11191.3,blat.proc3829891.chain_3366,blat.proc3829891.chain_3374	3
scaffold_2	spliced_intron	9191729	9191859	-	asmbl_23377,asmbl_23378,asmbl_23380,asmbl_23381,asmbl_23382	none	STRG.2167.1,STRG.2167.2,Trinity_GG_18242_c0_g1_i1,Trinity_GG_18242_c0_g1_i2,Trinity_GG_18242_c0_g1_i3,Trinity_GG_18242_c0_g1_i4,Trinity_GG_18242_c0_g1_i7,blat.proc3829887.chain_2099,blat.proc3829887.chain_2100,blat.proc3829887.chain_2101,blat.proc3829887.chain_2102,blat.proc3829887.chain_2104	12	Trinity_GG_18242_c0_g1_i12,blat.proc3829887.chain_2103	2
scaffold_1	alt_acceptor	13925533	13925534	-	asmbl_865	none	STRG.997.1,blat.proc3829887.chain_871	2	STRG.997.2,STRG.997.3	2
scaffold_6	alt_donor	14934105	14934106	-	asmbl_48980	none	STRG.8260.1,blat.proc3829891.chain_559	2	STRG.8260.2	1
scaffold_16	spliced_intron	14560038	14560115	-	asmbl_16646	none	STRG.19826.2,blat.proc3829897.chain_767,blat.proc3829897.chain_779	3	STRG.19826.1,blat.proc3829897.chain_766	2
scaffold_3	retained_exon	13958772	13958806	-	asmbl_39264	none	STRG.3735.2,Trinity_GG_19075_c0_g1_i1,blat.proc3829887.chain_3520	3	STRG.3735.1,Trinity_GG_19075_c0_g1_i2,blat.proc3829887.chain_3521	3
scaffold_4	spliced_intron	158350	158690	+	asmbl_42413	none	STRG.4113.1,blat.proc3829873.chain_496	2	Trinity_GG_2301_c0_g1_i2,Trinity_GG_2301_c1_g1_i1,blat.proc3829873.chain_495,blat.proc3829873.chain_497	4
scaffold_28	alt_donor	540454	540455	-	asmbl_37232,asmbl_37233,asmbl_37235	none	STRG.29258.1,STRG.29258.3,blat.proc3829901.chain_2295,blat.proc3829901.chain_2296	4	STRG.29258.2,blat.proc3829901.chain_2297	2
scaffold_4	alt_acceptor	4426557	4426558	-	asmbl_41252	none	STRG.4342.2	1	STRG.4342.1,STRG.4342.3,blat.proc3829889.chain_471,blat.proc3829889.chain_472,blat.proc3829889.chain_473	5
scaffold_22	ends_in_intron	11547942	11547942	+	asmbl_29697,asmbl_29698	none	STRG.25485.2,STRG.25485.3	2	STRG.25485.1,blat.proc3829883.chain_2361,blat.proc3829883.chain_2362	3
scaffold_18	alt_acceptor	7553491	7553492	-	asmbl_19992,asmbl_19993	none	STRG.21448.2,STRG.21448.3	2	STRG.21448.1,blat.proc3829897.chain_2296	2
scaffold_19	retained_intron	9456754	9457176	+	asmbl_22394	none	STRG.22365.4,Trinity_GG_12370_c1_g1_i4,blat.proc3829881.chain_3305	3	Trinity_GG_12370_c1_g1_i1,blat.proc3829881.chain_3307	2
scaffold_19	alt_donor	11560016	11560017	-	asmbl_21635	none	Trinity_GG_29507_c0_g1_i3,blat.proc3829897.chain_3144	2	Trinity_GG_29507_c0_g1_i2,blat.proc3829897.chain_3143	2
scaffold_17	alt_donor	11038542	11038543	-	asmbl_19315	none	STRG.20653.6	1	STRG.20653.3,blat.proc3829897.chain_1562	2
scaffold_13	alt_acceptor	16129944	16129945	-	asmbl_10235	none	STRG.16639.1,blat.proc3829895.chain_1331	2	STRG.16639.2,blat.proc3829895.chain_1330	2
scaffold_23	spliced_intron	4899316	4899400	+	asmbl_30833	none	STRG.25862.1,Trinity_GG_14276_c0_g1_i1,blat.proc3829883.chain_2748	3	STRG.25862.3	1
scaffold_13	retained_intron	925797	925912	-	asmbl_9351	none	blat.proc3829895.chain_195	1	STRG.15451.1,blat.proc3829895.chain_196	2
scaffold_6	skipped_exon	298817	299335	+	asmbl_46601,asmbl_46604	none	STRG.7082.2,Trinity_GG_3916_c0_g1_i8,blat.proc3829873.chain_3249	3	STRG.7082.1	1
scaffold_10	spliced_intron	1425641	1425720	+	asmbl_4215,asmbl_4220,asmbl_4222	none	STRG.12005.3,Trinity_GG_6688_c0_g1_i4,blat.proc3829877.chain_728,blat.proc3829877.chain_733	4	STRG.12005.2,Trinity_GG_6688_c0_g1_i3,Trinity_GG_6688_c0_g1_i8,blat.proc3829877.chain_727,blat.proc3829877.chain_730,blat.proc3829877.chain_732	6
scaffold_6	spliced_intron	19111383	19111555	+	asmbl_47821,asmbl_47822	none	STRG.8567.1,STRG.8567.3,Trinity_GG_4689_c0_g1_i1,blat.proc3829875.chain_941	4	STRG.8567.2,Trinity_GG_4689_c0_g1_i2,blat.proc3829875.chain_940	3
scaffold_2	retained_intron	13330421	13330492	+	asmbl_24863,asmbl_24864	none	STRG.2342.1,STRG.2342.2,blat.proc3829871.chain_2471,blat.proc3829871.chain_2472	4	STRG.2342.3,STRG.2342.5,blat.proc3829871.chain_2473	3
scaffold_23	skipped_exon	4099715	4101045	-	asmbl_31549,asmbl_31554	none	STRG.25802.1,STRG.25802.4	2	STRG.25802.2,blat.proc3829899.chain_2934	2
scaffold_5	starts_in_intron	14431225	14431225	+	asmbl_44599	none	Trinity_GG_3613_c0_g1_i2,blat.proc3829873.chain_2748	2	STRG.6638.1,blat.proc3829873.chain_2747	2
scaffold_26	ends_in_intron	8587539	8587539	-	asmbl_35009	none	STRG.28429.3,blat.proc3829901.chain_1501	2	STRG.28429.1,blat.proc3829901.chain_1498,blat.proc3829901.chain_1500	3
scaffold_21	alt_donor	11346200	11346201	-	asmbl_28149	none	STRG.24599.3	1	STRG.24599.2	1
scaffold_3	retained_intron	13988803	13989050	+	asmbl_40436	none	STRG.3741.2,Trinity_GG_2070_c0_g1_i4,blat.proc3829873.chain_87	3	STRG.3741.3,STRG.3741.4,Trinity_GG_2070_c0_g1_i1,blat.proc3829873.chain_88	4
scaffold_13	alt_acceptor	2996936	2996937	+	asmbl_10631,asmbl_10632	none	STRG.15589.1,Trinity_GG_8581_c0_g1_i3,blat.proc3829879.chain_309,blat.proc3829879.chain_310	4	STRG.15589.2,STRG.15589.3	2
scaffold_1	retained_exon	13884593	13884633	-	asmbl_858	none	STRG.993.2,blat.proc3829887.chain_868	2	STRG.993.1,STRG.993.5,blat.proc3829887.chain_867	3
scaffold_28	alternate_exon	5014596	5014616	+	asmbl_38253,asmbl_38255,asmbl_38256	none	Trinity_GG_16433_c0_g1_i1,blat.proc3829885.chain_2751,blat.proc3829885.chain_2752,blat.proc3829885.chain_2753	4	STRG.29628.3,Trinity_GG_16433_c0_g2_i4,blat.proc3829885.chain_2755	3
scaffold_12	alt_donor	9234410	9234411	-	asmbl_7794,asmbl_7797,asmbl_7799	none	STRG.14912.2,STRG.14912.3,STRG.14912.7	3	STRG.14912.4,STRG.14912.5,STRG.14912.6,STRG.14912.8,blat.proc3829893.chain_3298,blat.proc3829893.chain_3300,blat.proc3829893.chain_3301,blat.proc3829893.chain_3304,blat.proc3829893.chain_3305,blat.proc3829893.chain_3307	10
scaffold_5	alt_acceptor	18222896	18222897	+	asmbl_44876,asmbl_44877,asmbl_44880,asmbl_44881	none	STRG.6950.1,STRG.6950.3,STRG.6950.4,blat.proc3829873.chain_3088,blat.proc3829873.chain_3089	5	STRG.6950.2,STRG.6950.5	2
scaffold_340	spliced_intron	2968	3178	+	asmbl_40963,asmbl_40964,asmbl_40966,asmbl_40967	none	STRG.30267.1,STRG.30267.2,STRG.30267.3,blat.proc3829885.chain_3313,blat.proc3829893.chain_1073	5	STRG.30267.4	1
scaffold_6	retained_intron	298817	299072	+	asmbl_46599	none	STRG.7082.3,Trinity_GG_3916_c0_g1_i3,blat.proc3829873.chain_3252	3	STRG.7082.1,STRG.7082.4,Trinity_GG_3916_c0_g1_i2,blat.proc3829873.chain_3251	4
scaffold_5	alt_donor	16018234	16018235	-	asmbl_46118	none	STRG.6778.2,Trinity_GG_20823_c0_g1_i4,blat.proc3829889.chain_2846	3	blat.proc3829889.chain_2848	1
scaffold_10	ends_in_intron	13082041	13082041	-	asmbl_3764	none	STRG.12897.2	1	STRG.12897.1,blat.proc3829893.chain_1327	2
scaffold_11	retained_intron	3486134	3486289	+	asmbl_5394	none	Trinity_GG_7371_c1_g1_i2,blat.proc3829877.chain_1909,blat.proc3829877.chain_1910	3	STRG.13463.1	1
scaffold_16	alternate_exon	6147933	6151128	+	asmbl_17069	none	STRG.19342.1,Trinity_GG_10589_c1_g1_i1,blat.proc3829881.chain_215	3	STRG.19342.2,STRG.19342.3,STRG.19342.4,blat.proc3829881.chain_210	4
scaffold_11	retained_intron	1983670	1984066	-	asmbl_6439	none	Trinity_GG_24491_c0_g1_i5,blat.proc3829893.chain_1814,blat.proc3829893.chain_1816	3	STRG.13349.1,blat.proc3829893.chain_1817	2
scaffold_23	alt_donor	8811647	8811648	+	asmbl_31078	none	STRG.26127.1,blat.proc3829883.chain_3036	2	blat.proc3829883.chain_3037	1
scaffold_18	spliced_intron	3220749	3220823	+	asmbl_20478	none	STRG.21153.1,blat.proc3829881.chain_2034	2	blat.proc3829881.chain_2033	1
scaffold_14	retained_intron	13882015	13882099	+	asmbl_12493	none	blat.proc3829879.chain_2323	1	STRG.17650.1,blat.proc3829879.chain_2324,blat.proc3829879.chain_2325	3
scaffold_6	retained_intron	17672463	17672607	+	asmbl_47711,asmbl_47712,asmbl_47713,asmbl_47714	none	STRG.8454.2,STRG.8454.3,Trinity_GG_4651_c0_g1_i4,Trinity_GG_4651_c0_g1_i5,blat.proc3829875.chain_846,blat.proc3829875.chain_848,blat.proc3829875.chain_849,blat.proc3829875.chain_850	8	STRG.8454.1,STRG.8454.4,Trinity_GG_4651_c0_g1_i2,blat.proc3829875.chain_847	4
scaffold_26	starts_in_intron	6704414	6704414	-	asmbl_34973	none	blat.proc3829901.chain_1523	1	STRG.28358.1,STRG.28358.2,blat.proc3829901.chain_1521,blat.proc3829901.chain_1524	4
scaffold_8	alt_donor	11464006	11464007	+	asmbl_52216	none	STRG.10344.3	1	STRG.10344.2,Trinity_GG_5769_c0_g1_i1,blat.proc3829875.chain_2872	3
scaffold_4	alt_acceptor	3279176	3279177	+	asmbl_42493	none	STRG.4254.1,Trinity_GG_2364_c0_g1_i3,blat.proc3829873.chain_601	3	Trinity_GG_2364_c0_g1_i1,blat.proc3829873.chain_599	2
scaffold_10	starts_in_intron	9058945	9058945	-	asmbl_3569	none	blat.proc3829893.chain_1163	1	STRG.12643.1,STRG.12643.2,STRG.12643.3,blat.proc3829893.chain_1164,blat.proc3829893.chain_1165,blat.proc3829893.chain_1166,blat.proc3829893.chain_1168,blat.proc3829893.chain_1169	8
scaffold_5	alternate_exon	990449	990573	+	asmbl_43773	none	STRG.5645.1	1	STRG.5645.2,blat.proc3829873.chain_1820	2
scaffold_24	spliced_intron	9117195	9117393	+	asmbl_32512,asmbl_32513,asmbl_32516	none	STRG.26927.1,blat.proc3829885.chain_102,blat.proc3829885.chain_104,blat.proc3829885.chain_97	4	blat.proc3829885.chain_101,blat.proc3829885.chain_98	2
scaffold_14	alt_acceptor	6771293	6771294	-	asmbl_13142,asmbl_13144	none	STRG.17107.1,blat.proc3829895.chain_1744,blat.proc3829895.chain_1745	3	STRG.17107.2,blat.proc3829895.chain_1746	2
scaffold_8	starts_in_intron	4669263	4669263	-	asmbl_52779	none	Trinity_GG_22547_c0_g2_i1,blat.proc3829891.chain_2080	2	blat.proc3829891.chain_2078	1
scaffold_14	alt_acceptor	2501702	2501703	-	asmbl_12945	none	STRG.16847.1,blat.proc3829895.chain_1545	2	STRG.16847.2	1
scaffold_2	alt_donor	924509	924510	+	asmbl_24176,asmbl_24177	none	STRG.1569.3,STRG.1569.4	2	blat.proc3829871.chain_1535,blat.proc3829871.chain_1542	2
scaffold_3	alternate_exon	1469901	1470832	+	asmbl_39805	none	STRG.2964.1,Trinity_GG_1668_c0_g1_i3	2	Trinity_GG_1668_c0_g1_i2,blat.proc3829871.chain_3114	2
scaffold_9	alt_donor	16628024	16628025	-	asmbl_55558,asmbl_55560	none	STRG.11794.3,STRG.11794.4	2	STRG.11794.1,STRG.11794.2,blat.proc3829893.chain_174	3
scaffold_8	alt_acceptor	17666942	17666943	-	asmbl_53488	none	STRG.10675.1,blat.proc3829891.chain_2837	2	STRG.10675.2	1
scaffold_22	ends_in_intron	8300024	8300024	+	asmbl_29561	none	blat.proc3829883.chain_2182	1	STRG.25167.1	1
scaffold_21	retained_intron	6618853	6618996	+	asmbl_28693	none	blat.proc3829883.chain_1358	1	STRG.24174.1,blat.proc3829883.chain_1356,blat.proc3829883.chain_1357,blat.proc3829883.chain_1359	4
scaffold_13	spliced_intron	7655940	7656087	+	asmbl_11045,asmbl_11046,asmbl_11049,asmbl_11050	none	STRG.16039.1,blat.proc3829879.chain_775,blat.proc3829879.chain_778,blat.proc3829879.chain_779,blat.proc3829879.chain_781	5	blat.proc3829879.chain_780	1
scaffold_70	spliced_intron	11417	11841	+	asmbl_51549	none	STRG.30087.1,blat.proc3829885.chain_3151,blat.proc3829885.chain_3152	3	Trinity_GG_16663_c0_g1_i1,blat.proc3829885.chain_3153	2
scaffold_15	spliced_intron	15188079	15189128	+	asmbl_14675,asmbl_14676,asmbl_14682,asmbl_14685,asmbl_14688	none	STRG.18906.1,blat.proc3829879.chain_3474,blat.proc3829879.chain_3477,blat.proc3829879.chain_3479,blat.proc3829879.chain_3482,blat.proc3829879.chain_3484	6	blat.proc3829879.chain_3472,blat.proc3829879.chain_3478,blat.proc3829879.chain_3480,blat.proc3829879.chain_3485,blat.proc3829879.chain_3486	5
scaffold_14	retained_intron	9067614	9067868	-	asmbl_13332	none	STRG.17303.1,blat.proc3829895.chain_1961	2	blat.proc3829895.chain_1959	1
scaffold_6	alternate_exon	886410	886855	-	asmbl_48033	none	STRG.7153.2	1	blat.proc3829889.chain_3164	1
scaffold_7	starts_in_intron	9918844	9918844	-	asmbl_49912	none	blat.proc3829891.chain_1458	1	STRG.9192.1,blat.proc3829891.chain_1456,blat.proc3829891.chain_1457	3
scaffold_22	retained_intron	1013479	1013787	-	asmbl_29905	none	Trinity_GG_30832_c0_g1_i3,blat.proc3829899.chain_1859	2	STRG.24743.1,blat.proc3829899.chain_1857	2
scaffold_9	alternate_exon	6988388	6992588	+	asmbl_54105	none	STRG.11201.1,blat.proc3829875.chain_3700,blat.proc3829875.chain_3702	3	STRG.11201.3,blat.proc3829875.chain_3701	2
scaffold_15	alt_acceptor	11410306	11410307	-	asmbl_15519	none	STRG.18604.3,blat.proc3829895.chain_3393	2	STRG.18604.1,blat.proc3829895.chain_3392	2
scaffold_4	alt_acceptor	5651423	5651424	-	asmbl_41359,asmbl_41360,asmbl_41362	none	blat.proc3829889.chain_605,blat.proc3829889.chain_610,blat.proc3829889.chain_613	3	STRG.4469.3,blat.proc3829889.chain_607	2
scaffold_13	alt_acceptor	16150173	16150174	-	asmbl_10240	none	STRG.16644.3	1	STRG.16644.2,STRG.16644.4	2
scaffold_13	spliced_intron	1238377	1238503	+	asmbl_10514,asmbl_10515,asmbl_10517,asmbl_10518,asmbl_10521,asmbl_10525,asmbl_10526	none	STRG.15478.1,STRG.15478.2,STRG.15478.4,STRG.15478.5,STRG.15478.6,Trinity_GG_8526_c0_g2_i3,blat.proc3829879.chain_204,blat.proc3829879.chain_205,blat.proc3829879.chain_207,blat.proc3829879.chain_208	10	blat.proc3829879.chain_209	1
scaffold_7	alternate_exon	18394647	18394963	-	asmbl_50297	none	blat.proc3829891.chain_1873	1	Trinity_GG_22427_c0_g1_i15,Trinity_GG_22427_c0_g1_i5,blat.proc3829891.chain_1867,blat.proc3829891.chain_1874	4
scaffold_26	retained_intron	9044430	9044639	+	asmbl_35725	none	Trinity_GG_15751_c0_g1_i2,blat.proc3829885.chain_1494	2	STRG.28452.1,STRG.28452.2,Trinity_GG_15751_c0_g1_i1,blat.proc3829885.chain_1495	4
scaffold_19	alt_acceptor	11472687	11472688	-	asmbl_21606	none	STRG.22470.1,blat.proc3829897.chain_3163	2	STRG.22470.2,STRG.22470.4,blat.proc3829897.chain_3161,blat.proc3829897.chain_3162	4
scaffold_13	starts_in_intron	7655198	7655198	+	asmbl_11045,asmbl_11049	none	Trinity_GG_8822_c0_g1_i6,blat.proc3829879.chain_775,blat.proc3829879.chain_777	3	STRG.16039.1,blat.proc3829879.chain_780,blat.proc3829879.chain_781	3
scaffold_27	spliced_intron	512494	512580	-	asmbl_36648,asmbl_36650	none	STRG.28552.2,STRG.28552.3	2	STRG.28552.1,blat.proc3829901.chain_1737	2
scaffold_27	alt_acceptor	3903532	3903533	-	asmbl_36881	none	STRG.28839.1,blat.proc3829901.chain_1958	2	STRG.28839.2	1
scaffold_3	spliced_intron	18372532	18372629	-	asmbl_39566	none	STRG.4050.1	1	blat.proc3829889.chain_36	1
scaffold_27	ends_in_intron	2874954	2874954	+	asmbl_36093	none	STRG.28749.2,blat.proc3829885.chain_1834	2	STRG.28749.1,blat.proc3829885.chain_1830	2
scaffold_13	alternate_exon	16369152	16369364	-	asmbl_10270,asmbl_10271	none	STRG.16680.2,blat.proc3829895.chain_1297	2	STRG.16680.1,blat.proc3829895.chain_1298	2
scaffold_20	retained_exon	631162	631242	-	asmbl_26437	none	STRG.22751.3,blat.proc3829897.chain_3523	2	STRG.22751.2,blat.proc3829897.chain_3524	2
scaffold_23	alt_donor	4226698	4226699	-	asmbl_31568,asmbl_31570,asmbl_31574	none	STRG.25818.3,STRG.25818.5,blat.proc3829899.chain_2944,blat.proc3829899.chain_2945	4	STRG.25818.1,STRG.25818.2,blat.proc3829899.chain_2943,blat.proc3829899.chain_2949	4
scaffold_5	retained_intron	966879	967824	-	asmbl_45192	none	STRG.5638.2,Trinity_GG_20192_c0_g1_i1,Trinity_GG_20192_c0_g1_i3,Trinity_GG_20192_c1_g1_i1,blat.proc3829889.chain_1743,blat.proc3829889.chain_1744	6	STRG.5638.1	1
scaffold_1	alt_donor	13927213	13927214	-	asmbl_865	none	STRG.997.1,blat.proc3829887.chain_871	2	STRG.997.2,STRG.997.3	2
scaffold_10	ends_in_intron	12998999	12998999	-	asmbl_3750	none	Trinity_GG_24234_c0_g1_i1,blat.proc3829893.chain_1394	2	STRG.12900.2	1
scaffold_12	alt_donor	7271999	7272000	+	asmbl_8696	none	STRG.14786.1,blat.proc3829877.chain_3283	2	STRG.14786.2,blat.proc3829877.chain_3284	2
scaffold_5	alt_acceptor	6278137	6278138	-	asmbl_45475	none	STRG.6029.2	1	STRG.6029.1,blat.proc3829889.chain_2102	2
scaffold_6	alternate_exon	2863074	2863165	+	asmbl_46725	none	STRG.7272.2	1	STRG.7272.3,Trinity_GG_4000_c1_g1_i1,blat.proc3829873.chain_3408	3
scaffold_24	starts_in_intron	71600	71600	-	asmbl_32687	none	blat.proc3829899.chain_3363	1	STRG.26297.1,blat.proc3829899.chain_3364	2
scaffold_15	retained_intron	5144985	5145081	+	asmbl_14135	none	blat.proc3829879.chain_2839	1	STRG.18208.1,blat.proc3829879.chain_2836,blat.proc3829879.chain_2838	3
scaffold_2	spliced_intron	6765473	6765659	+	asmbl_24517,asmbl_24520,asmbl_24521,asmbl_24522,asmbl_24526	none	STRG.2035.1,Trinity_GG_1102_c0_g1_i1,Trinity_GG_1102_c0_g1_i11,Trinity_GG_1102_c0_g1_i2,Trinity_GG_1102_c0_g1_i5,Trinity_GG_1102_c0_g1_i7,blat.proc3829871.chain_2005,blat.proc3829871.chain_2008,blat.proc3829871.chain_2010,blat.proc3829871.chain_2011,blat.proc3829871.chain_2012	11	Trinity_GG_1102_c0_g1_i10,Trinity_GG_1102_c0_g1_i4,Trinity_GG_1102_c0_g1_i6,blat.proc3829871.chain_2006,blat.proc3829871.chain_2007,blat.proc3829871.chain_2013	6
scaffold_4	alt_donor	1979921	1979922	+	asmbl_42478	none	STRG.4223.3	1	STRG.4223.1,STRG.4223.2,blat.proc3829873.chain_579	3
scaffold_15	alt_acceptor	15857504	15857505	+	asmbl_14774,asmbl_14775	none	STRG.18964.1,STRG.18964.4	2	STRG.18964.3,STRG.18964.5,STRG.18964.6,Trinity_GG_10383_c0_g1_i3,Trinity_GG_10383_c0_g1_i7,blat.proc3829879.chain_3538,blat.proc3829879.chain_3539,blat.proc3829879.chain_3540,blat.proc3829879.chain_3542,blat.proc3829879.chain_3543	10
scaffold_6	alt_acceptor	17382269	17382270	+	asmbl_47684	none	STRG.8436.1,Trinity_GG_4638_c0_g1_i3,blat.proc3829875.chain_821	3	STRG.8436.2	1
scaffold_8	skipped_exon	9373145	9374067	-	asmbl_53021,asmbl_53027	none	STRG.10194.6,blat.proc3829891.chain_2355	2	STRG.10194.3,STRG.10194.4,STRG.10194.5,blat.proc3829891.chain_2356,blat.proc3829891.chain_2358	5
scaffold_4	starts_in_intron	5049831	5049831	+	asmbl_42659	none	STRG.4397.2	1	STRG.4397.1,Trinity_GG_2446_c0_g1_i2,blat.proc3829873.chain_787,blat.proc3829873.chain_788	4
scaffold_26	retained_exon	10121517	10121910	-	asmbl_35086,asmbl_35088,asmbl_35091,asmbl_35093	none	STRG.28511.1,STRG.28511.2,Trinity_GG_32936_c0_g1_i11,Trinity_GG_32936_c0_g1_i3,Trinity_GG_32936_c0_g1_i5,blat.proc3829901.chain_1633,blat.proc3829901.chain_1634,blat.proc3829901.chain_1635	8	Trinity_GG_32936_c0_g1_i13,blat.proc3829901.chain_1636	2
scaffold_9	alt_acceptor	12112864	12112865	+	asmbl_54393	none	STRG.11529.2	1	STRG.11529.1,blat.proc3829877.chain_304	2
scaffold_18	alt_acceptor	8382803	8382804	+	asmbl_20854	none	STRG.21501.2	1	STRG.21501.1,blat.proc3829881.chain_2503	2
scaffold_10	spliced_intron	8546671	8546911	-	asmbl_3510	none	blat.proc3829893.chain_1115	1	STRG.12603.1,blat.proc3829893.chain_1116,blat.proc3829893.chain_1117	3
scaffold_14	alt_donor	9272347	9272348	-	asmbl_13349	none	blat.proc3829895.chain_1998,blat.proc3829895.chain_1999	2	STRG.17323.3	1
scaffold_2	alt_donor	13079477	13079478	-	asmbl_23503,asmbl_23504,asmbl_23507,asmbl_23508,asmbl_23510	none	STRG.2340.1,STRG.2340.2,blat.proc3829887.chain_2255,blat.proc3829887.chain_2258,blat.proc3829887.chain_2259,blat.proc3829887.chain_2260,blat.proc3829887.chain_2262	7	STRG.2340.3,blat.proc3829887.chain_2256,blat.proc3829887.chain_2257	3
scaffold_2	alt_donor	6351029	6351030	-	asmbl_23220	none	STRG.2000.1,Trinity_GG_18078_c0_g1_i1,blat.proc3829887.chain_1763	3	STRG.2000.2	1
scaffold_13	retained_intron	6396468	6396589	+	asmbl_10912,asmbl_10913	none	Trinity_GG_8718_c0_g1_i2,Trinity_GG_8718_c0_g1_i5,blat.proc3829879.chain_549,blat.proc3829879.chain_555	4	STRG.15914.2,STRG.15914.3,STRG.15914.4,Trinity_GG_8718_c0_g1_i3,Trinity_GG_8718_c0_g1_i4,Trinity_GG_8718_c0_g1_i8,Trinity_GG_8718_c0_g1_i9,blat.proc3829879.chain_550,blat.proc3829879.chain_552,blat.proc3829879.chain_554,blat.proc3829879.chain_556	11
scaffold_9	spliced_intron	6903131	6903325	-	asmbl_55047,asmbl_55048,asmbl_55049,asmbl_55050,asmbl_55052,asmbl_55053,asmbl_55055,asmbl_55056	none	STRG.11191.1,STRG.11191.2,STRG.11191.5,blat.proc3829891.chain_3366,blat.proc3829891.chain_3367,blat.proc3829891.chain_3369,blat.proc3829891.chain_3370,blat.proc3829891.chain_3371,blat.proc3829891.chain_3373,blat.proc3829891.chain_3374,blat.proc3829891.chain_3375	11	STRG.11191.3,STRG.11191.4,blat.proc3829891.chain_3368,blat.proc3829891.chain_3372	4
scaffold_18	retained_intron	8726674	8726780	+	asmbl_20881	none	STRG.21533.6,Trinity_GG_11882_c0_g1_i2,blat.proc3829881.chain_2487	3	STRG.21533.1,STRG.21533.2,STRG.21533.3,STRG.21533.5,blat.proc3829881.chain_2483,blat.proc3829881.chain_2484,blat.proc3829881.chain_2485,blat.proc3829881.chain_2486,blat.proc3829881.chain_2488	9
scaffold_9	alt_donor	16575074	16575075	+	asmbl_54581	none	STRG.11786.3,blat.proc3829877.chain_535	2	STRG.11786.2,blat.proc3829877.chain_536	2
scaffold_7	ends_in_intron	31498	31498	+	asmbl_50417	none	Trinity_GG_4727_c1_g1_i4,blat.proc3829875.chain_1006	2	STRG.8577.1,STRG.8577.2,blat.proc3829875.chain_1007	3
scaffold_5	alt_donor	4948983	4948984	+	asmbl_43986	none	STRG.5946.3	1	Trinity_GG_3271_c0_g1_i1,blat.proc3829873.chain_2130	2
scaffold_17	alternate_exon	544862	546022	+	asmbl_17678	none	STRG.19891.1,Trinity_GG_10901_c0_g1_i2,blat.proc3829881.chain_737	3	STRG.19891.2	1
scaffold_6	retained_intron	5644143	5644250	-	asmbl_48368	none	Trinity_GG_21287_c0_g1_i2,blat.proc3829889.chain_3608	2	STRG.7523.1,blat.proc3829889.chain_3605,blat.proc3829889.chain_3606,blat.proc3829889.chain_3607	4
scaffold_16	alt_donor	5805818	5805819	+	asmbl_17019	none	STRG.19311.1,Trinity_GG_10534_c0_g1_i4,blat.proc3829881.chain_95	3	STRG.19311.3,Trinity_GG_10534_c0_g1_i2,blat.proc3829881.chain_94	3
scaffold_7	alt_donor	3954962	3954963	-	asmbl_49643,asmbl_49646,asmbl_49649,asmbl_49650	none	STRG.8791.1,blat.proc3829891.chain_1086,blat.proc3829891.chain_1089,blat.proc3829891.chain_1092,blat.proc3829891.chain_1093	5	STRG.8791.2,blat.proc3829891.chain_1088,blat.proc3829891.chain_1090,blat.proc3829891.chain_1091	4
scaffold_23	retained_intron	2016514	2016841	-	asmbl_31399	none	STRG.25655.1,blat.proc3829899.chain_2706	2	blat.proc3829899.chain_2707	1
scaffold_2	retained_intron	7876359	7876445	+	asmbl_24621	none	Trinity_GG_1183_c0_g1_i18,blat.proc3829871.chain_2179	2	STRG.2087.1,Trinity_GG_1183_c0_g1_i10,Trinity_GG_1183_c0_g1_i14,Trinity_GG_1183_c0_g1_i16,Trinity_GG_1183_c0_g1_i2,blat.proc3829871.chain_2180,blat.proc3829871.chain_2181,blat.proc3829871.chain_2182,blat.proc3829871.chain_2185	9
scaffold_7	retained_intron	12053972	12054062	+	asmbl_51087	none	blat.proc3829875.chain_1755	1	STRG.9298.1,blat.proc3829875.chain_1756	2
scaffold_16	ends_in_intron	8587949	8587949	+	asmbl_17217	none	STRG.19477.6	1	STRG.19477.1,STRG.19477.2,STRG.19477.3,STRG.19477.5,STRG.19477.7,STRG.19477.8,blat.proc3829881.chain_353,blat.proc3829881.chain_354,blat.proc3829881.chain_355,blat.proc3829881.chain_357,blat.proc3829881.chain_359	11
scaffold_28	spliced_intron	5237564	5237680	-	asmbl_37588,asmbl_37589,asmbl_37593,asmbl_37594	none	STRG.29652.1,STRG.29652.2,blat.proc3829901.chain_2680,blat.proc3829901.chain_2683,blat.proc3829901.chain_2685,blat.proc3829901.chain_2687	6	blat.proc3829901.chain_2678,blat.proc3829901.chain_2684	2
scaffold_22	ends_in_intron	6841411	6841411	+	asmbl_29417	none	blat.proc3829883.chain_2045	1	STRG.24986.1,blat.proc3829883.chain_2046	2
scaffold_14	spliced_intron	8002248	8002475	+	asmbl_12164,asmbl_12165	none	STRG.17199.1,Trinity_GG_9467_c0_g1_i4,blat.proc3829879.chain_1932	3	STRG.17199.2,Trinity_GG_9467_c0_g1_i1,Trinity_GG_9467_c0_g1_i2,blat.proc3829879.chain_1931,blat.proc3829879.chain_1934	5
scaffold_3	starts_in_intron	17416993	17416993	+	asmbl_40639	none	Trinity_GG_2234_c0_g1_i2	1	STRG.3975.1,blat.proc3829873.chain_380	2
scaffold_7	alt_donor	13575693	13575694	+	asmbl_51245	none	STRG.9451.1,Trinity_GG_5241_c0_g1_i1,blat.proc3829875.chain_1896	3	STRG.9451.2,Trinity_GG_5241_c0_g1_i2,blat.proc3829875.chain_1895	3
scaffold_7	alt_acceptor	10409914	10409915	+	asmbl_50999,asmbl_51003	none	STRG.9214.2,STRG.9214.3,blat.proc3829875.chain_1588	3	STRG.9214.4	1
scaffold_26	spliced_intron	9315672	9315826	+	asmbl_35737,asmbl_35738,asmbl_35739,asmbl_35740,asmbl_35741,asmbl_35746	none	STRG.28479.1,STRG.28479.2,STRG.28479.3,blat.proc3829885.chain_1519,blat.proc3829885.chain_1520	5	Trinity_GG_15765_c0_g1_i2,blat.proc3829885.chain_1515,blat.proc3829885.chain_1517,blat.proc3829885.chain_1518	4
scaffold_18	retained_intron	282012	282108	+	asmbl_20311	none	STRG.20973.2	1	STRG.20973.3	1
scaffold_9	spliced_intron	14817657	14818073	-	asmbl_55460,asmbl_55461,asmbl_55468	none	STRG.11693.1,STRG.11693.4,blat.proc3829893.chain_10,blat.proc3829893.chain_7,blat.proc3829893.chain_8	5	STRG.11693.2,Trinity_GG_23432_c0_g1_i6,blat.proc3829893.chain_9	3
scaffold_21	spliced_intron	7009179	7009301	-	asmbl_27799,asmbl_27800	none	STRG.24222.1,STRG.24222.2,blat.proc3829899.chain_1273,blat.proc3829899.chain_1275	4	blat.proc3829899.chain_1274	1
scaffold_23	spliced_intron	1514785	1514962	-	asmbl_31372	none	STRG.25610.1,blat.proc3829899.chain_2715	2	blat.proc3829899.chain_2714	1
scaffold_1	skipped_exon	11821382	11822845	+	asmbl_2136	none	STRG.801.1,Trinity_GG_509_c0_g1_i3,blat.proc3829871.chain_909	3	STRG.801.2,Trinity_GG_509_c0_g1_i1,blat.proc3829871.chain_911	3
scaffold_17	alt_donor	14546294	14546295	+	asmbl_18529	none	STRG.20918.3,blat.proc3829881.chain_1763	2	STRG.20918.1,STRG.20918.4,STRG.20918.5	3
scaffold_16	alt_acceptor	5357611	5357612	-	asmbl_16262	none	STRG.19276.1	1	STRG.19276.2	1
scaffold_6	retained_intron	13974353	13974450	+	asmbl_47496	none	blat.proc3829875.chain_571	1	STRG.8142.1,Trinity_GG_4475_c0_g1_i3,blat.proc3829875.chain_570	3
scaffold_22	alt_donor	6927222	6927223	-	asmbl_30112	none	STRG.24994.2,blat.proc3829899.chain_2089	2	STRG.24994.1,blat.proc3829899.chain_2087	2
scaffold_4	starts_in_intron	4690351	4690351	+	asmbl_42633	none	blat.proc3829873.chain_717	1	STRG.4376.1,blat.proc3829873.chain_713,blat.proc3829873.chain_716,blat.proc3829873.chain_718	4
scaffold_5	starts_in_intron	10358539	10358539	-	asmbl_45730	none	Trinity_GG_20540_c2_g1_i1,blat.proc3829889.chain_2337	2	STRG.6323.1,blat.proc3829889.chain_2335	2
scaffold_6	alt_donor	16605331	16605332	+	asmbl_47648	none	STRG.8378.3	1	STRG.8378.2,blat.proc3829875.chain_759	2
scaffold_23	ends_in_intron	7714633	7714633	+	asmbl_31024,asmbl_31026	none	STRG.26065.1,STRG.26065.2,blat.proc3829883.chain_2955	3	blat.proc3829883.chain_2954	1
scaffold_17	alt_donor	10037503	10037504	-	asmbl_19274	none	STRG.20608.3	1	STRG.20608.5,Trinity_GG_28623_c0_g1_i2,Trinity_GG_28623_c0_g1_i4,blat.proc3829897.chain_1586,blat.proc3829897.chain_1587	5
scaffold_20	alt_donor	11380303	11380304	+	asmbl_26191,asmbl_26193	none	STRG.23634.2,STRG.23634.5,Trinity_GG_13050_c0_g1_i1,blat.proc3829883.chain_704	4	STRG.23634.1,STRG.23634.3,STRG.23634.4,Trinity_GG_13050_c0_g1_i2,Trinity_GG_13050_c0_g1_i4,blat.proc3829883.chain_705,blat.proc3829883.chain_707	7
scaffold_26	starts_in_intron	7904316	7904316	-	asmbl_34995	none	Trinity_GG_32879_c1_g1_i1,blat.proc3829901.chain_1546	2	STRG.28398.1	1
scaffold_1	retained_exon	22372256	22372575	+	asmbl_2677,asmbl_2678	none	STRG.1490.3,STRG.1490.5	2	STRG.1490.1	1
scaffold_4	starts_in_intron	17541568	17541568	+	asmbl_43396	none	blat.proc3829873.chain_1624	1	STRG.5341.1,blat.proc3829873.chain_1625	2
scaffold_10	alt_acceptor	3774879	3774880	-	asmbl_3141	none	STRG.12201.1,blat.proc3829893.chain_660	2	STRG.12201.2	1
scaffold_17	retained_intron	11568197	11568238	+	asmbl_18361,asmbl_18362	none	STRG.20693.1,STRG.20693.2	2	STRG.20693.3,STRG.20693.4	2
scaffold_9	starts_in_intron	4812673	4812673	-	asmbl_54934	none	blat.proc3829891.chain_3204	1	STRG.11040.1,blat.proc3829891.chain_3205,blat.proc3829891.chain_3206	3
scaffold_14	spliced_intron	7525035	7525343	+	asmbl_12151,asmbl_12153	none	STRG.17182.2,Trinity_GG_9453_c0_g1_i1,blat.proc3829879.chain_1913	3	STRG.17182.1,Trinity_GG_9453_c0_g1_i2,Trinity_GG_9453_c0_g1_i3,blat.proc3829879.chain_1912,blat.proc3829879.chain_1914	5
scaffold_5	spliced_intron	19031567	19031895	-	asmbl_46259,asmbl_46261,asmbl_46262,asmbl_46267	none	STRG.7018.3,STRG.7018.5,STRG.7018.7,Trinity_GG_20922_c0_g1_i8,blat.proc3829889.chain_3008,blat.proc3829889.chain_3009,blat.proc3829889.chain_3010	7	STRG.7018.6,blat.proc3829889.chain_3007	2
scaffold_5	spliced_intron	9853206	9853277	-	asmbl_45687	none	STRG.6296.1	1	STRG.6296.2	1
scaffold_5	retained_exon	6717952	6718042	+	asmbl_44108	none	STRG.6066.2,blat.proc3829873.chain_2162	2	STRG.6066.1,Trinity_GG_3283_c0_g1_i2,blat.proc3829873.chain_2161	3
scaffold_15	retained_intron	2467971	2467990	-	asmbl_15020	none	Trinity_GG_27137_c0_g1_i1	1	STRG.18008.1	1
scaffold_22	alternate_exon	4343452	4344994	+	asmbl_29274	none	STRG.24835.1,blat.proc3829883.chain_1864	2	STRG.24835.3,blat.proc3829883.chain_1863	2
scaffold_15	alternate_exon	13655009	13655262	-	asmbl_15669	none	STRG.18784.3	1	STRG.18784.1,blat.proc3829895.chain_3505	2
scaffold_2	ends_in_intron	7936893	7936893	+	asmbl_24637	none	Trinity_GG_1149_c0_g2_i1,blat.proc3829871.chain_2106	2	Trinity_GG_1149_c0_g1_i1,blat.proc3829871.chain_2101	2
scaffold_5	ends_in_intron	5729910	5729910	+	asmbl_44024	none	blat.proc3829873.chain_2081	1	STRG.5982.1,STRG.5982.2,blat.proc3829873.chain_2082,blat.proc3829873.chain_2083	4
scaffold_4	spliced_intron	16582373	16582576	+	asmbl_43318	none	STRG.5234.1,Trinity_GG_2906_c0_g1_i1,blat.proc3829873.chain_1519	3	Trinity_GG_2906_c0_g1_i2,blat.proc3829873.chain_1518	2
scaffold_20	retained_intron	5923668	5924973	-	asmbl_26707	none	STRG.23184.4,Trinity_GG_29913_c0_g1_i4,blat.proc3829899.chain_146	3	STRG.23184.2,blat.proc3829899.chain_145,blat.proc3829899.chain_148,blat.proc3829899.chain_150	4
scaffold_21	alt_acceptor	3015597	3015598	+	asmbl_28458	none	blat.proc3829883.chain_1069	1	STRG.23914.1,STRG.23914.2,blat.proc3829883.chain_1067,blat.proc3829883.chain_1068,blat.proc3829883.chain_1070,blat.proc3829883.chain_1071	6
scaffold_26	skipped_exon	9840009	9841946	-	asmbl_35066	none	STRG.28525.1,Trinity_GG_32930_c0_g1_i1,blat.proc3829901.chain_1622	3	STRG.28525.2,Trinity_GG_32930_c0_g1_i2,blat.proc3829901.chain_1621	3
scaffold_6	skipped_exon	18659791	18661833	+	asmbl_47776	none	STRG.8534.1,blat.proc3829875.chain_946,blat.proc3829875.chain_948	3	blat.proc3829875.chain_949,blat.proc3829875.chain_950	2
scaffold_6	spliced_intron	5434772	5434884	+	asmbl_46886,asmbl_46887,asmbl_46888,asmbl_46890	none	STRG.7507.1,STRG.7507.2,STRG.7507.3,Trinity_GG_4108_c0_g1_i2,Trinity_GG_4108_c0_g1_i3,blat.proc3829873.chain_3620,blat.proc3829873.chain_3621,blat.proc3829873.chain_3622,blat.proc3829873.chain_3623	9	Trinity_GG_4108_c0_g1_i5,blat.proc3829873.chain_3624	2
scaffold_19	retained_intron	6213363	6213463	+	asmbl_22201	none	STRG.22141.4,Trinity_GG_12238_c0_g1_i3,blat.proc3829881.chain_3087	3	STRG.22141.1,blat.proc3829881.chain_3090	2
scaffold_13	alternate_exon	7718019	7718221	-	asmbl_9865	none	blat.proc3829895.chain_749	1	STRG.16043.1,blat.proc3829895.chain_748	2
scaffold_6	alt_donor	14808318	14808319	-	asmbl_48970	none	STRG.8251.2	1	STRG.8251.1	1
scaffold_27	alternate_exon	316811	317224	-	asmbl_36610	none	STRG.28538.4,Trinity_GG_32948_c0_g1_i7,blat.proc3829901.chain_1670	3	STRG.28538.2,STRG.28538.3,blat.proc3829901.chain_1673	3
scaffold_5	retained_intron	10534403	10534505	-	asmbl_45742	none	STRG.6332.1,blat.proc3829889.chain_2347	2	STRG.6332.3,blat.proc3829889.chain_2349	2
scaffold_21	retained_intron	10848260	10848466	-	asmbl_28102	none	STRG.24540.1,blat.proc3829899.chain_1569	2	STRG.24540.2,blat.proc3829899.chain_1570	2
scaffold_9	spliced_intron	3414002	3414140	-	asmbl_54866,asmbl_54869	none	STRG.10946.1,blat.proc3829891.chain_3122	2	blat.proc3829891.chain_3121,blat.proc3829891.chain_3123	2
scaffold_3	spliced_intron	14519626	14519705	-	asmbl_39335,asmbl_39338	none	STRG.3789.1,Trinity_GG_19119_c0_g1_i2,Trinity_GG_19119_c0_g1_i5,blat.proc3829887.chain_3617,blat.proc3829887.chain_3619	5	Trinity_GG_19119_c0_g1_i4,blat.proc3829887.chain_3618	2
scaffold_13	alt_donor	16048795	16048796	+	asmbl_11523	none	STRG.16628.1	1	STRG.16628.2,blat.proc3829879.chain_1379	2
scaffold_25	alt_donor	3086843	3086844	-	asmbl_34074,asmbl_34075,asmbl_34076	none	STRG.27230.1,STRG.27230.2,STRG.27230.3	3	blat.proc3829901.chain_488,blat.proc3829901.chain_489,blat.proc3829901.chain_490,blat.proc3829901.chain_491	4
scaffold_1	retained_intron	6299428	6299549	-	asmbl_355,asmbl_358	none	STRG.424.3,blat.proc3829887.chain_303	2	STRG.424.5	1
scaffold_13	alternate_exon	1530216	1530380	-	asmbl_9376,asmbl_9377,asmbl_9380	none	STRG.15500.1,STRG.15500.2,STRG.15500.3,Trinity_GG_25702_c0_g1_i5,blat.proc3829895.chain_260	5	Trinity_GG_25702_c0_g1_i2,blat.proc3829895.chain_261	2
scaffold_15	alternate_exon	12063118	12063212	+	asmbl_14466	none	STRG.18644.2,blat.proc3829879.chain_3229	2	STRG.18644.1,blat.proc3829879.chain_3230	2
scaffold_2	alternate_exon	6210522	6210940	-	asmbl_23210	none	STRG.1985.2,Trinity_GG_18090_c3_g1_i1,blat.proc3829887.chain_1790	3	STRG.1985.1,blat.proc3829887.chain_1785,blat.proc3829887.chain_1787	3
scaffold_8	starts_in_intron	18423746	18423746	+	asmbl_52544	none	Trinity_GG_5948_c0_g1_i3,blat.proc3829875.chain_3212	2	STRG.10731.1	1
scaffold_3	alternate_exon	14576165	14576256	-	asmbl_39347,asmbl_39349	none	STRG.3795.3,blat.proc3829887.chain_3615	2	STRG.3795.2,blat.proc3829887.chain_3612	2
scaffold_8	alt_donor	17454461	17454462	+	asmbl_52469	none	blat.proc3829875.chain_3087	1	STRG.10660.1,Trinity_GG_5884_c0_g1_i2,blat.proc3829875.chain_3086	3
scaffold_13	ends_in_intron	11944183	11944183	-	asmbl_10076	none	STRG.16316.3	1	STRG.16316.1,STRG.16316.2,blat.proc3829895.chain_1073	3
scaffold_13	alt_acceptor	11342247	11342248	+	asmbl_11248	none	STRG.16283.2	1	STRG.16283.1,blat.proc3829879.chain_953	2
scaffold_10	alt_donor	2762614	2762615	-	asmbl_3039,asmbl_3042	none	STRG.12086.3,blat.proc3829893.chain_542,blat.proc3829893.chain_543	3	STRG.12086.1,STRG.12086.2,blat.proc3829893.chain_541,blat.proc3829893.chain_544	4
scaffold_27	alt_acceptor	627259	627260	-	asmbl_36654	none	STRG.28563.1,blat.proc3829901.chain_1752	2	STRG.28563.2,STRG.28563.4,Trinity_GG_32986_c0_g1_i1,blat.proc3829901.chain_1749,blat.proc3829901.chain_1753	5
scaffold_3	alt_donor	5005232	5005233	+	asmbl_40015	none	STRG.3199.3,Trinity_GG_1799_c0_g2_i2	2	STRG.3199.1,STRG.3199.2	2
scaffold_8	spliced_intron	6028914	6029014	+	asmbl_51909,asmbl_51912,asmbl_51914,asmbl_51915	none	Trinity_GG_5590_c1_g1_i6,blat.proc3829875.chain_2551,blat.proc3829875.chain_2553,blat.proc3829875.chain_2554,blat.proc3829875.chain_2555	5	blat.proc3829875.chain_2552	1
scaffold_23	alt_acceptor	7941280	7941281	-	asmbl_31781	none	STRG.26079.3	1	STRG.26079.2	1
scaffold_8	alt_acceptor	10484362	10484363	+	asmbl_52162	none	blat.proc3829875.chain_2784	1	STRG.10277.2,blat.proc3829875.chain_2785	2
scaffold_5	spliced_intron	2242543	2242602	-	asmbl_45274	none	STRG.5754.2	1	STRG.5754.1,blat.proc3829889.chain_1835	2
scaffold_2	spliced_intron	5716839	5716996	+	asmbl_24459,asmbl_24461	none	STRG.1962.1,STRG.1962.2,blat.proc3829871.chain_1938	3	STRG.1962.3,Trinity_GG_1056_c0_g2_i1,blat.proc3829871.chain_1940	3
scaffold_25	starts_in_intron	7803781	7803781	-	asmbl_34380	none	blat.proc3829901.chain_899	1	STRG.27583.1,blat.proc3829901.chain_898	2
scaffold_9	starts_in_intron	9655551	9655551	+	asmbl_54210	none	blat.proc3829877.chain_101	1	STRG.11332.1,STRG.11332.2,blat.proc3829877.chain_100,blat.proc3829877.chain_98,blat.proc3829877.chain_99	5
scaffold_13	retained_exon	7504556	7506114	-	asmbl_9848,asmbl_9850	none	STRG.16034.1,blat.proc3829895.chain_813,blat.proc3829895.chain_822	3	Trinity_GG_26030_c0_g1_i10,blat.proc3829895.chain_816	2
scaffold_10	alt_donor	10505603	10505604	-	asmbl_3650	none	blat.proc3829893.chain_1196	1	STRG.12728.1,blat.proc3829893.chain_1197	2
scaffold_22	starts_in_intron	11402149	11402149	+	asmbl_29666	none	Trinity_GG_14029_c0_g1_i1,Trinity_GG_14029_c0_g1_i4,blat.proc3829883.chain_2342,blat.proc3829883.chain_2344	4	STRG.25459.1,Trinity_GG_14029_c0_g1_i5	2
scaffold_10	alt_donor	11601926	11601927	+	asmbl_4760	none	blat.proc3829877.chain_1378	1	blat.proc3829877.chain_1385	1
scaffold_15	starts_in_intron	14633806	14633806	-	asmbl_15752	none	blat.proc3829895.chain_3646	1	STRG.18867.1,STRG.18867.4,blat.proc3829895.chain_3645	3
scaffold_10	alternate_exon	2787348	2790106	-	asmbl_3046,asmbl_3048	none	STRG.12096.1,Trinity_GG_23730_c0_g1_i4,Trinity_GG_23730_c0_g1_i5,blat.proc3829893.chain_515,blat.proc3829893.chain_516,blat.proc3829893.chain_517,blat.proc3829893.chain_519	7	Trinity_GG_23730_c0_g2_i1,blat.proc3829893.chain_520	2
scaffold_7	alt_acceptor	12422436	12422437	+	asmbl_51139,asmbl_51140	none	STRG.9335.1,STRG.9335.2,blat.proc3829875.chain_1793,blat.proc3829875.chain_1794	4	STRG.9335.3	1
scaffold_6	alternate_exon	4987653	4987725	+	asmbl_46846	none	STRG.7466.3	1	STRG.7466.1,STRG.7466.2,blat.proc3829873.chain_3544,blat.proc3829873.chain_3545	4
scaffold_4	alt_acceptor	12531448	12531449	-	asmbl_41661	none	STRG.4887.1,Trinity_GG_19696_c0_g1_i3,blat.proc3829889.chain_880,blat.proc3829889.chain_881	4	STRG.4887.2	1
scaffold_12	retained_exon	9667999	9668104	+	asmbl_8832,asmbl_8833	none	STRG.14928.2,Trinity_GG_8223_c0_g1_i2,Trinity_GG_8223_c0_g1_i3,blat.proc3829877.chain_3378,blat.proc3829877.chain_3380	5	STRG.14928.1	1
scaffold_2	alternate_exon	16355941	16357456	+	asmbl_25150,asmbl_25154	none	STRG.2573.2,STRG.2573.3,blat.proc3829871.chain_2760	3	STRG.2573.4,Trinity_GG_1455_c0_g1_i3,blat.proc3829871.chain_2758,blat.proc3829871.chain_2759	4
scaffold_13	retained_intron	6762160	6762916	+	asmbl_10955,asmbl_10956,asmbl_10958	none	STRG.15952.1,STRG.15952.2,Trinity_GG_8761_c0_g1_i2,blat.proc3829879.chain_633,blat.proc3829879.chain_634	5	blat.proc3829879.chain_632	1
scaffold_3	alternate_exon	934624	935337	-	asmbl_38643	none	blat.proc3829887.chain_2736	1	Trinity_GG_18622_c0_g1_i2,blat.proc3829887.chain_2738	2
scaffold_28	alt_donor	9450830	9450831	+	asmbl_38479	none	STRG.29957.1,blat.proc3829885.chain_2956	2	STRG.29957.2	1
scaffold_1	spliced_intron	12334913	12335043	-	asmbl_710,asmbl_711,asmbl_715,asmbl_719,asmbl_720,asmbl_723	none	STRG.843.1,STRG.843.2,blat.proc3829887.chain_734,blat.proc3829887.chain_741,blat.proc3829887.chain_743,blat.proc3829887.chain_744,blat.proc3829887.chain_745	7	blat.proc3829887.chain_737,blat.proc3829887.chain_739,blat.proc3829887.chain_746	3
scaffold_18	starts_in_intron	3579984	3579984	+	asmbl_20483	none	Trinity_GG_11647_c0_g1_i1,blat.proc3829881.chain_2038	2	STRG.21163.1,blat.proc3829881.chain_2037	2
scaffold_5	alternate_exon	60912	60936	+	asmbl_43731	none	blat.proc3829873.chain_1774	1	STRG.5564.1	1
scaffold_15	starts_in_intron	4805201	4805201	-	asmbl_15168	none	blat.proc3829895.chain_2844	1	STRG.18182.1,blat.proc3829895.chain_2845	2
scaffold_12	ends_in_intron	2433446	2433446	+	asmbl_8459	none	Trinity_GG_8007_c0_g1_i2,blat.proc3829877.chain_2996	2	STRG.14488.1,Trinity_GG_8007_c0_g1_i1,blat.proc3829877.chain_2995	3
scaffold_23	alt_acceptor	330708	330709	-	asmbl_31304	none	STRG.25530.2	1	STRG.25530.1,STRG.25530.3,blat.proc3829899.chain_2625,blat.proc3829899.chain_2626	4
scaffold_22	starts_in_intron	4372464	4372464	+	asmbl_29293	none	STRG.24842.2,blat.proc3829883.chain_1886	2	STRG.24842.1,blat.proc3829883.chain_1887	2
scaffold_28	alt_acceptor	2406015	2406016	+	asmbl_38059,asmbl_38062	none	STRG.29393.3,blat.proc3829885.chain_2483	2	STRG.29393.1,STRG.29393.2,STRG.29393.4,blat.proc3829885.chain_2482,blat.proc3829885.chain_2484,blat.proc3829885.chain_2485	6
scaffold_6	starts_in_intron	2479521	2479521	-	asmbl_48076	none	Trinity_GG_21054_c0_g2_i1	1	STRG.7236.1,STRG.7236.3,blat.proc3829889.chain_3219,blat.proc3829889.chain_3220,blat.proc3829889.chain_3223	5
scaffold_18	retained_intron	2148780	2149152	-	asmbl_19746	none	STRG.21102.1,Trinity_GG_28844_c0_g1_i1,blat.proc3829897.chain_2010	3	STRG.21102.2,blat.proc3829897.chain_2009	2
scaffold_17	retained_intron	2533988	2534159	-	asmbl_18804	none	blat.proc3829897.chain_987	1	STRG.20035.1,STRG.20035.2,blat.proc3829897.chain_984,blat.proc3829897.chain_985,blat.proc3829897.chain_986	5
scaffold_7	retained_intron	9311355	9311554	+	asmbl_50960	none	blat.proc3829875.chain_1610	1	STRG.9133.1,Trinity_GG_5081_c0_g1_i1,Trinity_GG_5081_c0_g1_i2,blat.proc3829875.chain_1611,blat.proc3829875.chain_1612	5
scaffold_16	ends_in_intron	1479074	1479074	+	asmbl_16866	none	STRG.19080.1,blat.proc3829879.chain_3690	2	STRG.19080.2	1
scaffold_20	alt_acceptor	1439311	1439312	-	asmbl_26496	none	STRG.22849.2	1	STRG.22849.1	1
scaffold_24	alt_donor	6297525	6297526	+	asmbl_32307	none	STRG.26668.2,Trinity_GG_14747_c0_g1_i2,blat.proc3829883.chain_3578	3	STRG.26668.1,Trinity_GG_14747_c0_g1_i1,blat.proc3829883.chain_3577	3
scaffold_22	alt_acceptor	6841097	6841098	-	asmbl_30105	none	blat.proc3829899.chain_2044	1	blat.proc3829899.chain_2043,blat.proc3829899.chain_2046	2
scaffold_5	retained_intron	14261375	14261517	+	asmbl_44581,asmbl_44582,asmbl_44583	none	STRG.6629.3,Trinity_GG_3625_c0_g1_i10,Trinity_GG_3625_c0_g1_i7,blat.proc3829873.chain_2762,blat.proc3829873.chain_2763,blat.proc3829873.chain_2765,blat.proc3829873.chain_2766	7	STRG.6629.1,STRG.6629.2,blat.proc3829873.chain_2764,blat.proc3829873.chain_2767,blat.proc3829873.chain_2769	5
scaffold_17	ends_in_intron	4652779	4652779	-	asmbl_18918	none	blat.proc3829897.chain_1138	1	STRG.20186.1	1
scaffold_15	ends_in_intron	4490451	4490451	+	asmbl_14082	none	blat.proc3829879.chain_2751	1	STRG.18165.1,STRG.18165.2,blat.proc3829879.chain_2747,blat.proc3829879.chain_2748,blat.proc3829879.chain_2749,blat.proc3829879.chain_2750	6
scaffold_16	spliced_intron	434057	434518	-	asmbl_16043,asmbl_16047,asmbl_16048	none	STRG.19039.1,blat.proc3829897.chain_20,blat.proc3829897.chain_21	3	blat.proc3829897.chain_17,blat.proc3829897.chain_18,blat.proc3829897.chain_19,blat.proc3829897.chain_23,blat.proc3829897.chain_24	5
scaffold_11	spliced_intron	17084606	17085018	-	asmbl_7225,asmbl_7226,asmbl_7227,asmbl_7228,asmbl_7229	none	STRG.14362.2,STRG.14362.3,STRG.14362.4,STRG.14362.5,blat.proc3829893.chain_2767,blat.proc3829893.chain_2768,blat.proc3829893.chain_2771,blat.proc3829893.chain_2772	8	STRG.14362.1,Trinity_GG_25027_c0_g1_i5,blat.proc3829893.chain_2769	3
scaffold_7	retained_exon	4514054	4514159	+	asmbl_50616	none	STRG.8814.1,blat.proc3829875.chain_1228	2	STRG.8814.2	1
scaffold_14	spliced_intron	2128876	2129082	-	asmbl_12896,asmbl_12898,asmbl_12901	none	STRG.16822.1,Trinity_GG_26440_c0_g1_i4,Trinity_GG_26440_c0_g1_i9,blat.proc3829895.chain_1527,blat.proc3829895.chain_1529,blat.proc3829895.chain_1530	6	Trinity_GG_26440_c0_g1_i7,blat.proc3829895.chain_1528	2
scaffold_5	retained_intron	19463375	19463478	-	asmbl_46294	none	STRG.7036.2	1	STRG.7036.1	1
scaffold_4	alternate_exon	17116847	17117376	+	asmbl_43372	none	STRG.5308.3,Trinity_GG_2943_c1_g1_i1,blat.proc3829873.chain_1585,blat.proc3829873.chain_1588,blat.proc3829873.chain_1591	5	STRG.5308.4	1
scaffold_5	skipped_exon	2173563	2176098	-	asmbl_45266	none	STRG.5744.3	1	STRG.5744.1,STRG.5744.2,blat.proc3829889.chain_1867	3
scaffold_4	alternate_exon	4552860	4556731	+	asmbl_42619,asmbl_42620	none	STRG.4367.2,blat.proc3829873.chain_736,blat.proc3829873.chain_737,blat.proc3829873.chain_738	4	STRG.4367.1,STRG.4367.3	2
scaffold_2	retained_intron	18614288	18614705	-	asmbl_23823	none	blat.proc3829887.chain_2514	1	blat.proc3829887.chain_2516	1
scaffold_2	ends_in_intron	14643414	14643414	+	asmbl_24992	none	blat.proc3829871.chain_2640	1	STRG.2459.1	1
scaffold_22	spliced_intron	485089	485440	+	asmbl_29149	none	STRG.24679.1,blat.proc3829883.chain_1725	2	blat.proc3829883.chain_1727	1
scaffold_1	retained_intron	5964053	5964145	+	asmbl_1799	none	Trinity_GG_257_c0_g1_i3,blat.proc3829871.chain_457	2	STRG.396.1,STRG.396.2,blat.proc3829871.chain_454	3
scaffold_5	retained_exon	15044158	15044202	-	asmbl_46015	none	STRG.6692.5	1	STRG.6692.3,STRG.6692.6,Trinity_GG_20768_c0_g2_i1,blat.proc3829889.chain_2744	4
scaffold_1	alt_donor	5733864	5733865	+	asmbl_1758,asmbl_1761	none	STRG.380.1,blat.proc3829871.chain_442,blat.proc3829871.chain_443	3	STRG.380.2,blat.proc3829871.chain_446	2
scaffold_9	spliced_intron	12272920	12273070	-	asmbl_55329	none	STRG.11540.1,blat.proc3829891.chain_3667	2	blat.proc3829891.chain_3666	1
scaffold_23	alternate_exon	330880	331185	-	asmbl_31303	none	STRG.25530.3,blat.proc3829899.chain_2626	2	STRG.25530.1,STRG.25530.2,blat.proc3829899.chain_2625	3
scaffold_2	retained_exon	14734586	14734648	+	asmbl_24999	none	STRG.2472.2,blat.proc3829871.chain_2654	2	STRG.2472.1,blat.proc3829871.chain_2652,blat.proc3829871.chain_2653	3
scaffold_19	skipped_exon	6255614	6257998	+	asmbl_22207	none	blat.proc3829881.chain_3020	1	STRG.22144.1,blat.proc3829881.chain_3019	2
scaffold_5	spliced_intron	14124759	14124862	-	asmbl_45968	none	STRG.6617.1	1	blat.proc3829873.chain_2715	1
scaffold_13	alt_donor	3330955	3330956	-	asmbl_9493	none	STRG.15627.1,blat.proc3829895.chain_383	2	STRG.15627.2,blat.proc3829895.chain_382	2
scaffold_11	spliced_intron	11943331	11943516	-	asmbl_7019,asmbl_7020,asmbl_7021,asmbl_7022,asmbl_7023,asmbl_7029	none	STRG.14160.1,STRG.14160.2,STRG.14160.3,STRG.14160.4,STRG.14160.5,STRG.14160.6,blat.proc3829893.chain_2558	7	Trinity_GG_24916_c2_g1_i1,blat.proc3829893.chain_2567	2
scaffold_3	starts_in_intron	3244021	3244021	+	asmbl_39898	none	STRG.3087.4	1	STRG.3087.1,STRG.3087.3,blat.proc3829871.chain_3299,blat.proc3829871.chain_3307	4
scaffold_24	starts_in_intron	9082636	9082636	+	asmbl_32500	none	Trinity_GG_14897_c0_g1_i4,blat.proc3829885.chain_78	2	STRG.26929.1,STRG.26929.2,STRG.26929.3,Trinity_GG_14897_c0_g1_i2,Trinity_GG_14897_c0_g1_i8,Trinity_GG_14897_c0_g1_i9,blat.proc3829885.chain_71,blat.proc3829885.chain_72,blat.proc3829885.chain_73,blat.proc3829885.chain_74,blat.proc3829885.chain_76	11
scaffold_13	retained_intron	4803	5026	+	asmbl_10416,asmbl_10418,asmbl_10420,asmbl_10421,asmbl_10422,asmbl_10423	none	STRG.15408.1,STRG.15408.3,Trinity_GG_8474_c0_g1_i1,Trinity_GG_8474_c0_g1_i2,Trinity_GG_8474_c0_g1_i6,Trinity_GG_8474_c0_g1_i7,Trinity_GG_8474_c0_g1_i8,blat.proc3829879.chain_71,blat.proc3829879.chain_72,blat.proc3829879.chain_75,blat.proc3829879.chain_76,blat.proc3829879.chain_78	12	STRG.15408.2,Trinity_GG_8474_c0_g1_i4,blat.proc3829879.chain_74	3
scaffold_5	alt_donor	1548522	1548523	-	asmbl_45251	none	STRG.5706.2	1	STRG.5706.1,STRG.5706.3,blat.proc3829889.chain_1819,blat.proc3829889.chain_1821,blat.proc3829901.chain_3398	5
scaffold_3	retained_intron	3263784	3264657	+	asmbl_39893,asmbl_39897	none	STRG.3087.6,Trinity_GG_1771_c0_g1_i19,blat.proc3829871.chain_3296,blat.proc3829871.chain_3301	4	STRG.3087.1	1
scaffold_12	retained_intron	6424684	6424834	-	asmbl_7666,asmbl_7667,asmbl_7668,asmbl_7669	none	STRG.14731.2,STRG.14731.3,STRG.14731.4,blat.proc3829893.chain_3150,blat.proc3829893.chain_3151	5	STRG.14731.1,blat.proc3829893.chain_3149	2
scaffold_14	spliced_intron	7495217	7495629	+	asmbl_12144	none	STRG.17177.2,Trinity_GG_9413_c1_g1_i2,blat.proc3829879.chain_1836	3	STRG.17177.1,blat.proc3829879.chain_1838	2
scaffold_23	retained_intron	10909931	10909952	-	asmbl_31882,asmbl_31883	none	STRG.26273.2,STRG.26273.3,Trinity_GG_31671_c0_g1_i1,Trinity_GG_31671_c0_g1_i2,blat.proc3829899.chain_3308	5	STRG.26273.1	1
scaffold_15	retained_intron	15355271	15355388	+	asmbl_14706,asmbl_14707,asmbl_14708,asmbl_14709,asmbl_14711,asmbl_14712	none	STRG.18909.1,STRG.18909.3,Trinity_GG_10368_c0_g1_i4,Trinity_GG_10368_c0_g1_i7,Trinity_GG_10368_c0_g1_i9,blat.proc3829879.chain_3501,blat.proc3829879.chain_3502,blat.proc3829879.chain_3503,blat.proc3829879.chain_3504,blat.proc3829879.chain_3505	10	STRG.18909.2,blat.proc3829879.chain_3499	2
scaffold_5	retained_intron	2400901	2400920	+	asmbl_43830	none	STRG.5759.2,Trinity_GG_3157_c1_g1_i1	2	blat.proc3829873.chain_1944	1
scaffold_550	alt_acceptor	1331	1332	+	asmbl_46515,asmbl_46517	none	STRG.30343.2,blat.proc3829885.chain_3382	2	STRG.30343.1,blat.proc3829885.chain_3383	2
scaffold_4	retained_intron	4692423	4692526	+	asmbl_42632	none	blat.proc3829873.chain_718	1	STRG.4376.1,blat.proc3829873.chain_714,blat.proc3829873.chain_716,blat.proc3829873.chain_717	4
scaffold_2	alt_donor	14276152	14276153	+	asmbl_24928	none	STRG.2425.2	1	STRG.2425.3,blat.proc3829871.chain_2541,blat.proc3829871.chain_2542,blat.proc3829871.chain_2543	4
scaffold_26	retained_exon	9608494	9609701	+	asmbl_35765	none	STRG.28493.1,Trinity_GG_15716_c0_g1_i2,blat.proc3829885.chain_1427	3	STRG.28493.3	1
scaffold_300	alternate_exon	987	1706	+	asmbl_40849,asmbl_40850	none	STRG.30247.1,STRG.30247.3,blat.proc3829885.chain_3278,blat.proc3829885.chain_3279	4	blat.proc3829885.chain_3281	1
scaffold_1	retained_intron	14200941	14201384	+	asmbl_2323,asmbl_2324,asmbl_2329	none	Trinity_GG_586_c0_g1_i3,blat.proc3829871.chain_1045,blat.proc3829871.chain_1049,blat.proc3829871.chain_1051	4	STRG.1004.2,STRG.1004.3,Trinity_GG_586_c0_g1_i4,Trinity_GG_586_c0_g1_i5,blat.proc3829871.chain_1046,blat.proc3829871.chain_1052	6
scaffold_13	alt_acceptor	8203469	8203470	-	asmbl_9911	none	blat.proc3829895.chain_879	1	blat.proc3829895.chain_878	1
scaffold_21	skipped_exon	7116647	7117325	+	asmbl_28730	none	STRG.24224.2	1	STRG.24224.1,Trinity_GG_13420_c0_g1_i1,blat.proc3829883.chain_1369	3
scaffold_14	starts_in_intron	2471783	2471783	-	asmbl_12939	none	blat.proc3829895.chain_1575	1	STRG.16846.1,blat.proc3829895.chain_1576	2
scaffold_13	alt_donor	16161668	16161669	-	asmbl_10241	none	STRG.16647.2,blat.proc3829895.chain_1328	2	STRG.16647.1,blat.proc3829895.chain_1327	2
scaffold_43	retained_intron	829	922	-	asmbl_43670	none	STRG.30025.2	1	STRG.30025.1,STRG.30025.5	2
scaffold_18	alt_donor	3100699	3100700	-	asmbl_19782	none	STRG.21147.2	1	STRG.21147.1	1
scaffold_10	spliced_intron	6077386	6078828	-	asmbl_3348,asmbl_3350	none	STRG.12437.1,blat.proc3829893.chain_921	2	STRG.12437.2,STRG.12437.3,STRG.12437.5,Trinity_GG_23966_c0_g2_i1,blat.proc3829893.chain_926	5
scaffold_10	spliced_intron	5010430	5010561	-	asmbl_3251	none	blat.proc3829893.chain_749	1	STRG.12317.1,blat.proc3829893.chain_748	2
scaffold_10	retained_intron	9042003	9042107	+	asmbl_4635,asmbl_4636	none	Trinity_GG_6976_c0_g1_i1,Trinity_GG_6976_c0_g1_i2,blat.proc3829877.chain_1218,blat.proc3829877.chain_1220	4	STRG.12644.1,blat.proc3829877.chain_1219	2
scaffold_4	alt_acceptor	12716823	12716824	-	asmbl_41699	none	STRG.4911.2,blat.proc3829889.chain_979	2	STRG.4911.1,blat.proc3829889.chain_977	2
scaffold_20	retained_intron	7104772	7104894	-	asmbl_26796	none	STRG.23268.1,blat.proc3829899.chain_227	2	STRG.23268.3,blat.proc3829899.chain_226	2
scaffold_4	retained_intron	6286227	6286678	-	asmbl_41409	none	Trinity_GG_19560_c0_g1_i9,blat.proc3829889.chain_662	2	STRG.4498.2,Trinity_GG_19560_c0_g1_i1,blat.proc3829889.chain_663	3
scaffold_1	ends_in_intron	16480954	16480954	-	asmbl_994	none	blat.proc3829887.chain_1055	1	STRG.1157.1,STRG.1157.2,blat.proc3829887.chain_1053,blat.proc3829887.chain_1054,blat.proc3829887.chain_1057	5
scaffold_10	skipped_exon	6705691	6706060	-	asmbl_3412	none	blat.proc3829893.chain_979	1	STRG.12492.1,blat.proc3829893.chain_977,blat.proc3829893.chain_978	3
scaffold_23	alt_donor	5305335	5305336	+	asmbl_30861,asmbl_30862	none	STRG.25889.2,blat.proc3829883.chain_2775	2	STRG.25889.1,blat.proc3829883.chain_2773,blat.proc3829883.chain_2776	3
scaffold_26	skipped_exon	5648505	5649556	-	asmbl_34887	none	STRG.28255.1	1	STRG.28255.2,STRG.28255.3,blat.proc3829901.chain_1436,blat.proc3829901.chain_1437,blat.proc3829901.chain_1438,blat.proc3829901.chain_1439,blat.proc3829901.chain_1440,blat.proc3829901.chain_1441,blat.proc3829901.chain_1442,blat.proc3829901.chain_1443	10
scaffold_16	alternate_exon	7026026	7026168	+	asmbl_17111	none	STRG.19361.1	1	STRG.19361.2	1
scaffold_6	alt_acceptor	15112355	15112356	+	asmbl_47595	none	STRG.8269.3	1	STRG.8269.1,STRG.8269.2,blat.proc3829875.chain_672	3
scaffold_13	starts_in_intron	5391270	5391270	+	asmbl_10828	none	Trinity_GG_8665_c0_g1_i1,blat.proc3829879.chain_458	2	STRG.15821.1,STRG.15821.2,blat.proc3829879.chain_457	3
scaffold_27	alt_acceptor	1972275	1972276	-	asmbl_36747	none	STRG.28657.1,blat.proc3829901.chain_1842	2	STRG.28657.2	1
scaffold_15	starts_in_intron	7434999	7434999	-	asmbl_15321	none	blat.proc3829895.chain_3097	1	STRG.18330.1,blat.proc3829895.chain_3100	2
scaffold_3	retained_exon	16077959	16078006	-	asmbl_39423,asmbl_39424	none	STRG.3885.1,STRG.3885.2,blat.proc3829887.chain_3684,blat.proc3829887.chain_3685	4	STRG.3885.3,STRG.3885.4	2
scaffold_17	skipped_exon	9570215	9571436	+	asmbl_18243	none	STRG.20567.1,blat.proc3829881.chain_1334	2	STRG.20567.2,blat.proc3829881.chain_1332	2
scaffold_20	starts_in_intron	6988589	6988589	-	asmbl_26783	none	Trinity_GG_29951_c0_g1_i4	1	STRG.23252.1	1
scaffold_5	spliced_intron	10382183	10382274	-	asmbl_45734,asmbl_45735	none	STRG.6330.1,STRG.6330.2	2	STRG.6330.3,blat.proc3829889.chain_2440,blat.proc3829889.chain_2441	3
scaffold_24	retained_intron	6297525	6297691	+	asmbl_32306	none	STRG.26668.3,Trinity_GG_14747_c0_g1_i3,blat.proc3829883.chain_3576	3	STRG.26668.2,Trinity_GG_14747_c0_g1_i2,blat.proc3829883.chain_3578	3
scaffold_4	retained_intron	19356141	19356419	-	asmbl_42187,asmbl_42188,asmbl_42189,asmbl_42190	none	blat.proc3829889.chain_1609,blat.proc3829889.chain_1612,blat.proc3829889.chain_1613,blat.proc3829889.chain_1617	4	STRG.5528.1,blat.proc3829889.chain_1615	2
scaffold_25	starts_in_intron	9565813	9565813	-	asmbl_34482	none	blat.proc3829901.chain_1036	1	STRG.27753.1,Trinity_GG_32562_c0_g1_i6,blat.proc3829901.chain_1034	3
scaffold_23	alt_acceptor	2414915	2414916	+	asmbl_30706	none	STRG.25693.3	1	STRG.25693.1,STRG.25693.2,Trinity_GG_14189_c0_g1_i1,blat.proc3829883.chain_2608	4
scaffold_18	alt_acceptor	12608869	12608870	-	asmbl_20186	none	STRG.21714.1	1	STRG.21714.2,blat.proc3829897.chain_2527	2
scaffold_5	alt_donor	2235118	2235119	-	asmbl_45268	none	STRG.5750.2	1	STRG.5750.1	1
scaffold_23	alt_donor	3237238	3237239	+	asmbl_30730	none	STRG.25739.2,blat.proc3829883.chain_2654	2	STRG.25739.1,blat.proc3829883.chain_2655	2
scaffold_8	starts_in_intron	5065	5065	+	asmbl_51635	none	Trinity_GG_5366_c0_g1_i1,blat.proc3829875.chain_2151	2	STRG.9694.1,blat.proc3829875.chain_2150	2
scaffold_6	alt_acceptor	13735271	13735272	+	asmbl_47470	none	STRG.8124.3	1	STRG.8124.1,STRG.8124.2,blat.proc3829875.chain_476,blat.proc3829875.chain_477	4
scaffold_2	alt_acceptor	15267757	15267758	+	asmbl_25025	none	blat.proc3829871.chain_2517	1	STRG.2480.1,STRG.2480.2,Trinity_GG_1353_c0_g1_i14,blat.proc3829871.chain_2514,blat.proc3829871.chain_2515,blat.proc3829871.chain_2516,blat.proc3829871.chain_2518,blat.proc3829871.chain_2519,blat.proc3829871.chain_2520,blat.proc3829871.chain_2521,blat.proc3829871.chain_2523	11
scaffold_17	retained_intron	10050035	10050204	+	asmbl_18285,asmbl_18288	none	STRG.20609.3,Trinity_GG_11293_c0_g1_i5,blat.proc3829881.chain_1430	3	blat.proc3829881.chain_1429	1
scaffold_1	skipped_exon	20966469	20967714	+	asmbl_2654	none	STRG.1429.2	1	STRG.1429.1,blat.proc3829871.chain_1495	2
scaffold_10	spliced_intron	8897245	8897475	-	asmbl_3535,asmbl_3537,asmbl_3541	none	blat.proc3829893.chain_1127,blat.proc3829893.chain_1132,blat.proc3829893.chain_1134	3	blat.proc3829893.chain_1135	1
scaffold_18	retained_intron	5730383	5730838	+	asmbl_20631	none	STRG.21313.1,Trinity_GG_11744_c0_g1_i1,blat.proc3829881.chain_2235	3	STRG.21313.2,Trinity_GG_11744_c0_g1_i3,blat.proc3829881.chain_2237	3
scaffold_5	alt_acceptor	15547083	15547084	-	asmbl_46077,asmbl_46079	none	STRG.6737.1,STRG.6737.2,blat.proc3829889.chain_2776	3	STRG.6737.3	1
scaffold_11	retained_intron	13593399	13593726	-	asmbl_7124	none	STRG.14205.1,Trinity_GG_24961_c0_g1_i2,blat.proc3829893.chain_2657	3	blat.proc3829893.chain_2655,blat.proc3829893.chain_2656	2
scaffold_28	alt_donor	2893287	2893288	+	asmbl_38112	none	STRG.29457.2,blat.proc3829885.chain_2532	2	STRG.29457.1,blat.proc3829885.chain_2533	2
scaffold_4	skipped_exon	7151794	7152429	+	asmbl_42807	none	STRG.4558.1	1	STRG.4558.5	1
scaffold_13	retained_intron	15672407	15672426	+	asmbl_11505	none	STRG.16598.1	1	STRG.16598.2	1
scaffold_20	alternate_exon	2724362	2725064	+	asmbl_25655	none	STRG.22988.2	1	STRG.22988.1,Trinity_GG_12632_c0_g1_i1,blat.proc3829883.chain_49	3
scaffold_2	retained_intron	16084074	16084172	-	asmbl_23686	none	blat.proc3829887.chain_2399	1	STRG.2559.1,blat.proc3829887.chain_2398,blat.proc3829887.chain_2401	3
scaffold_28	starts_in_intron	538225	538225	-	asmbl_37237	none	Trinity_GG_33347_c5_g1_i1,blat.proc3829901.chain_2302	2	STRG.29258.1,STRG.29258.2,STRG.29258.3,blat.proc3829901.chain_2295,blat.proc3829901.chain_2296,blat.proc3829901.chain_2297	6
scaffold_1	spliced_intron	4567214	4567837	-	asmbl_206,asmbl_211	none	STRG.277.4,blat.proc3829887.chain_133,blat.proc3829887.chain_138	3	STRG.277.3,Trinity_GG_17147_c0_g1_i8,blat.proc3829887.chain_139	3
scaffold_4	starts_in_intron	14611662	14611662	+	asmbl_43231	none	Trinity_GG_2850_c0_g1_i1,blat.proc3829873.chain_1422	2	STRG.5083.1,blat.proc3829873.chain_1423	2
scaffold_27	retained_intron	314737	315174	-	asmbl_36613,asmbl_36615,asmbl_36617	none	STRG.28538.1,STRG.28538.2,blat.proc3829901.chain_1673	3	STRG.28538.3	1
scaffold_2	starts_in_intron	5184681	5184681	-	asmbl_23160	none	blat.proc3829887.chain_1861	1	STRG.1936.1,STRG.1936.2,blat.proc3829887.chain_1855,blat.proc3829887.chain_1859,blat.proc3829887.chain_1860	5
scaffold_4	alt_donor	3238368	3238369	-	asmbl_41167	none	STRG.4247.4	1	STRG.4247.1,STRG.4247.3	2
scaffold_1	retained_intron	8644831	8644990	-	asmbl_474,asmbl_476,asmbl_482,asmbl_483	none	STRG.572.3,blat.proc3829887.chain_454,blat.proc3829887.chain_456,blat.proc3829887.chain_457	4	STRG.572.1,STRG.572.2,blat.proc3829887.chain_455,blat.proc3829887.chain_458	4
scaffold_9	retained_intron	6902533	6902622	-	asmbl_55050,asmbl_55055,asmbl_55058	none	STRG.11191.3,blat.proc3829891.chain_3366,blat.proc3829891.chain_3374	3	STRG.11191.1,STRG.11191.2,STRG.11191.4,STRG.11191.5,blat.proc3829891.chain_3367,blat.proc3829891.chain_3368,blat.proc3829891.chain_3369,blat.proc3829891.chain_3370,blat.proc3829891.chain_3371,blat.proc3829891.chain_3372,blat.proc3829891.chain_3373,blat.proc3829891.chain_3375	12
scaffold_28	alternate_exon	2198534	2198599	+	asmbl_38038	none	Trinity_GG_16268_c1_g1_i1,blat.proc3829885.chain_2448	2	STRG.29368.3	1
scaffold_27	alt_donor	5015680	5015681	+	asmbl_36294	none	STRG.28909.1,blat.proc3829885.chain_2042	2	STRG.28909.2,STRG.28909.3,Trinity_GG_16013_c0_g1_i3,blat.proc3829885.chain_2040,blat.proc3829885.chain_2041	5
scaffold_20	alternate_exon	1006731	1006774	+	asmbl_25557	none	STRG.22791.2	1	STRG.22791.3	1
scaffold_10	alt_donor	3510475	3510476	+	asmbl_4331	none	STRG.12181.3	1	STRG.12181.2	1
scaffold_7	alternate_exon	12261960	12262124	+	asmbl_51104	none	STRG.9311.2,Trinity_GG_5126_c0_g1_i2,blat.proc3829875.chain_1685	3	Trinity_GG_5126_c0_g1_i1,blat.proc3829875.chain_1683	2
scaffold_6	spliced_intron	17672230	17672360	+	asmbl_47710,asmbl_47712,asmbl_47714,asmbl_47715	none	STRG.8454.1,STRG.8454.2,STRG.8454.4,Trinity_GG_4651_c0_g1_i2,Trinity_GG_4651_c0_g1_i5,blat.proc3829875.chain_847,blat.proc3829875.chain_848,blat.proc3829875.chain_850	8	STRG.8454.3,Trinity_GG_4651_c0_g1_i4,blat.proc3829875.chain_846,blat.proc3829875.chain_849	4
scaffold_17	retained_intron	8318266	8318617	+	asmbl_18101	none	blat.proc3829881.chain_1249	1	STRG.20443.1,STRG.20443.3,Trinity_GG_11211_c0_g1_i1,blat.proc3829881.chain_1252	4
scaffold_5	starts_in_intron	9705486	9705486	-	asmbl_45677,asmbl_45680	none	blat.proc3829889.chain_2370,blat.proc3829889.chain_2373,blat.proc3829889.chain_2376	3	STRG.6283.2,blat.proc3829889.chain_2369,blat.proc3829889.chain_2377	3
scaffold_11	retained_exon	9149693	9149768	+	asmbl_5833	none	STRG.13940.2,blat.proc3829877.chain_2459	2	STRG.13940.1,blat.proc3829877.chain_2458	2
scaffold_25	retained_intron	3738082	3738200	-	asmbl_34136	none	blat.proc3829901.chain_616	1	STRG.27308.1,blat.proc3829901.chain_615	2
scaffold_23	starts_in_intron	10889390	10889390	+	asmbl_31173	none	Trinity_GG_14521_c0_g2_i1,blat.proc3829883.chain_3184	2	STRG.26266.1,blat.proc3829883.chain_3183	2
scaffold_20	spliced_intron	10249203	10249538	-	asmbl_27020	none	STRG.23558.2,blat.proc3829899.chain_556	2	blat.proc3829899.chain_557	1
scaffold_4	alt_donor	14586096	14586097	-	asmbl_41797	none	STRG.5075.1	1	STRG.5075.2	1
scaffold_16	starts_in_intron	6107971	6107971	-	asmbl_16310	none	blat.proc3829897.chain_379	1	STRG.19329.1,blat.proc3829897.chain_380,blat.proc3829897.chain_382	3
scaffold_3	alternate_exon	1556799	1560384	-	asmbl_38679	none	STRG.2981.2	1	STRG.2981.1,blat.proc3829887.chain_2715,blat.proc3829887.chain_2716	3
scaffold_20	alt_acceptor	10132770	10132771	+	asmbl_26090	none	blat.proc3829883.chain_650	1	STRG.23543.2	1
scaffold_18	retained_exon	8400470	8400594	+	asmbl_20857	none	STRG.21503.1,blat.proc3829881.chain_2515	2	STRG.21503.4	1
scaffold_14	ends_in_intron	15255060	15255060	+	asmbl_12573	none	STRG.17739.1	1	STRG.17739.2	1
scaffold_2	spliced_intron	16288921	16289287	+	asmbl_25137,asmbl_25138,asmbl_25142	none	STRG.2560.1,STRG.2560.2,blat.proc3829871.chain_2750	3	blat.proc3829871.chain_2749,blat.proc3829871.chain_2751,blat.proc3829871.chain_2752	3
scaffold_13	retained_intron	14015268	14015390	-	asmbl_10135	none	blat.proc3829895.chain_1199	1	blat.proc3829895.chain_1198,blat.proc3829895.chain_1201	2
scaffold_2	spliced_intron	7894830	7894910	+	asmbl_24625,asmbl_24633	none	STRG.2086.1,blat.proc3829871.chain_2189,blat.proc3829871.chain_2191,blat.proc3829871.chain_2196	4	STRG.2086.2,STRG.2086.3,Trinity_GG_1187_c0_g1_i12,Trinity_GG_1187_c0_g1_i17,blat.proc3829871.chain_2190,blat.proc3829871.chain_2193,blat.proc3829871.chain_2194,blat.proc3829871.chain_2195,blat.proc3829871.chain_2198,blat.proc3829871.chain_2199	10
scaffold_26	ends_in_intron	968911	968911	-	asmbl_34673	none	Trinity_GG_32635_c0_g1_i2,blat.proc3829901.chain_1137	2	STRG.27878.1,STRG.27878.2,blat.proc3829901.chain_1136	3
scaffold_6	alt_donor	16054108	16054109	-	asmbl_49034	none	STRG.8339.1,blat.proc3829891.chain_662	2	STRG.8339.2,blat.proc3829891.chain_661	2
scaffold_10	retained_intron	2787857	2787930	-	asmbl_3047	none	STRG.12096.2,Trinity_GG_23730_c0_g1_i2,blat.proc3829893.chain_518	3	STRG.12096.1,Trinity_GG_23730_c0_g1_i4,Trinity_GG_23730_c0_g1_i5,blat.proc3829893.chain_515,blat.proc3829893.chain_516,blat.proc3829893.chain_517,blat.proc3829893.chain_519	7
scaffold_5	skipped_exon	8565762	8567600	+	asmbl_44216	none	STRG.6188.2	1	STRG.6188.1,blat.proc3829873.chain_2337	2
scaffold_5	alternate_exon	4697494	4697633	+	asmbl_43947,asmbl_43955	none	STRG.5917.6,STRG.5917.7,blat.proc3829873.chain_2095	3	STRG.5917.5,blat.proc3829873.chain_2096	2
scaffold_21	alternate_exon	5254066	5254124	-	asmbl_27654	none	STRG.24045.2	1	STRG.24045.1,blat.proc3829899.chain_1115	2
scaffold_3	retained_intron	3890125	3890210	+	asmbl_39940	none	STRG.3105.2	1	STRG.3105.1,blat.proc3829871.chain_3274,blat.proc3829871.chain_3275	3
scaffold_1	alternate_exon	2402933	2403605	-	asmbl_119	none	STRG.151.2,Trinity_GG_17105_c0_g1_i1,blat.proc3829887.chain_52	3	STRG.151.1,blat.proc3829887.chain_53	2
scaffold_27	spliced_intron	5049610	5049786	-	asmbl_36937,asmbl_36938	none	STRG.28917.4,STRG.28917.5	2	STRG.28917.1,Trinity_GG_33220_c0_g1_i9,blat.proc3829901.chain_2107	3
scaffold_10	ends_in_intron	11500627	11500627	+	asmbl_4740	none	STRG.12793.1,Trinity_GG_7025_c0_g1_i3,blat.proc3829877.chain_1302	3	blat.proc3829877.chain_1299	1
scaffold_6	retained_exon	13060355	13060448	-	asmbl_48813	none	STRG.8056.4	1	STRG.8056.3	1
scaffold_1	ends_in_intron	5206831	5206831	+	asmbl_1706	none	blat.proc3829871.chain_400	1	STRG.323.2,blat.proc3829871.chain_396,blat.proc3829871.chain_397,blat.proc3829871.chain_398	4
scaffold_2	alt_acceptor	2845834	2845835	-	asmbl_22952	none	STRG.1725.1,blat.proc3829887.chain_1506	2	STRG.1725.2	1
scaffold_23	alt_donor	3053562	3053563	-	asmbl_31504	none	STRG.25733.2,blat.proc3829899.chain_2804	2	STRG.25733.1,blat.proc3829899.chain_2805	2
scaffold_7	alt_donor	8318950	8318951	-	asmbl_49816	none	blat.proc3829891.chain_1324	1	STRG.9058.4,blat.proc3829891.chain_1323	2
scaffold_10	starts_in_intron	13629587	13629587	-	asmbl_3821	none	blat.proc3829893.chain_1490	1	STRG.12953.1,blat.proc3829893.chain_1487	2
scaffold_3	starts_in_intron	13179086	13179086	+	asmbl_40389	none	Trinity_GG_2066_c0_g1_i3,blat.proc3829873.chain_75	2	STRG.3679.1,blat.proc3829873.chain_76,blat.proc3829873.chain_77,blat.proc3829873.chain_78,blat.proc3829873.chain_79,blat.proc3829873.chain_80	6
scaffold_26	alt_acceptor	5150601	5150602	+	asmbl_35490	none	Trinity_GG_15577_c0_g1_i1,blat.proc3829885.chain_1203	2	STRG.28203.1	1
scaffold_20	starts_in_intron	8317165	8317165	+	asmbl_25922	none	blat.proc3829883.chain_443	1	STRG.23363.1,STRG.23363.2,blat.proc3829883.chain_442,blat.proc3829883.chain_444	4
scaffold_7	ends_in_intron	17808076	17808076	+	asmbl_51383	none	blat.proc3829875.chain_2096	1	STRG.9616.1,blat.proc3829875.chain_2098,blat.proc3829875.chain_2099,blat.proc3829875.chain_2102,blat.proc3829875.chain_2103,blat.proc3829875.chain_2105	6
scaffold_9	alt_donor	61876	61877	-	asmbl_54769	none	blat.proc3829891.chain_2964	1	STRG.10754.4,Trinity_GG_23008_c0_g2_i2,blat.proc3829891.chain_2965	3
scaffold_7	alt_acceptor	688489	688490	+	asmbl_50436	none	STRG.8594.1	1	STRG.8594.2,STRG.8594.4	2
scaffold_21	ends_in_intron	537492	537492	+	asmbl_28298	none	Trinity_GG_13166_c0_g1_i2,blat.proc3829883.chain_916	2	STRG.23733.1,Trinity_GG_13166_c0_g1_i1,blat.proc3829883.chain_915	3
scaffold_24	spliced_intron	3655845	3656072	+	asmbl_32165,asmbl_32168	none	STRG.26528.1,blat.proc3829883.chain_3404,blat.proc3829883.chain_3408	3	STRG.26528.5,Trinity_GG_14654_c0_g1_i1,blat.proc3829883.chain_3409	3
scaffold_25	skipped_exon	6067602	6068378	-	asmbl_34287,asmbl_34295	none	STRG.27475.1,blat.proc3829901.chain_717,blat.proc3829901.chain_722	3	blat.proc3829901.chain_721	1
scaffold_18	alt_donor	8436152	8436153	-	asmbl_20046,asmbl_20047	none	STRG.21514.1,STRG.21514.2,Trinity_GG_29005_c0_g1_i2,blat.proc3829897.chain_2280,blat.proc3829897.chain_2281	5	STRG.21514.3	1
scaffold_13	retained_intron	220491	221239	+	asmbl_10433,asmbl_10434	none	blat.proc3829879.chain_98,blat.proc3829879.chain_99	2	STRG.15414.1,blat.proc3829879.chain_100	2
scaffold_1	retained_intron	9254137	9254609	+	asmbl_1961,asmbl_1964	none	STRG.616.1,STRG.616.2,Trinity_GG_391_c0_g1_i2,blat.proc3829871.chain_681	4	STRG.616.3,Trinity_GG_391_c0_g1_i1,blat.proc3829871.chain_680	3
scaffold_2	starts_in_intron	4599462	4599462	+	asmbl_24391	none	STRG.1887.2	1	STRG.1887.1,blat.proc3829871.chain_1860	2
scaffold_4	retained_intron	12374031	12374180	-	asmbl_41650	none	blat.proc3829889.chain_947	1	STRG.4872.1,blat.proc3829889.chain_948,blat.proc3829889.chain_949	3
scaffold_2	alt_donor	14232097	14232098	-	asmbl_23603	none	blat.proc3829887.chain_2303	1	STRG.2418.1	1
scaffold_9	retained_intron	5220781	5220889	+	asmbl_53987	none	Trinity_GG_6143_c0_g1_i4,blat.proc3829875.chain_3502	2	STRG.11094.1,STRG.11094.2,STRG.11094.3,blat.proc3829875.chain_3503	4
scaffold_10	skipped_exon	2658614	2659095	-	asmbl_3027	none	STRG.12069.1,Trinity_GG_23707_c0_g1_i2,blat.proc3829893.chain_483	3	STRG.12069.2	1
scaffold_19	spliced_intron	12250408	12251336	+	asmbl_22576	none	STRG.22543.1,Trinity_GG_12459_c0_g1_i1,blat.proc3829881.chain_3466	3	STRG.22543.2,Trinity_GG_12459_c0_g1_i2,blat.proc3829881.chain_3467	3
scaffold_14	retained_intron	3418982	3419012	+	asmbl_11921	none	STRG.16912.1,Trinity_GG_9261_c0_g1_i1	2	STRG.16912.2	1
scaffold_5	retained_exon	15468880	15469028	+	asmbl_44657	none	STRG.6725.1	1	STRG.6725.2	1
scaffold_9	alt_acceptor	10242517	10242518	+	asmbl_54263	none	STRG.11358.2,blat.proc3829877.chain_59	2	STRG.11358.1,blat.proc3829877.chain_57	2
scaffold_22	starts_in_intron	3799004	3799004	-	asmbl_29954	none	STRG.24795.2,blat.proc3829899.chain_1854	2	STRG.24795.1	1
scaffold_25	skipped_exon	4818189	4818895	+	asmbl_33534	none	Trinity_GG_15069_c0_g1_i3,blat.proc3829885.chain_358	2	STRG.27398.1,STRG.27398.2,STRG.27398.3,Trinity_GG_15069_c0_g1_i1,Trinity_GG_15069_c0_g1_i2,blat.proc3829885.chain_359,blat.proc3829885.chain_360	7
scaffold_14	skipped_exon	209003	210779	-	asmbl_12779	none	STRG.16702.3,Trinity_GG_26362_c0_g1_i5,blat.proc3829895.chain_1405	3	STRG.16702.1,Trinity_GG_26362_c0_g1_i3,blat.proc3829895.chain_1403	3
scaffold_24	alt_acceptor	6310224	6310225	+	asmbl_32309	none	STRG.26676.2,blat.proc3829883.chain_3587	2	STRG.26676.1,STRG.26676.4	2
scaffold_2	starts_in_intron	4144533	4144533	+	asmbl_24360	none	Trinity_GG_1004_c0_g1_i1	1	STRG.1855.1	1
scaffold_2	starts_in_intron	14153307	14153307	+	asmbl_24916	none	Trinity_GG_1361_c0_g1_i2,blat.proc3829871.chain_2576	2	STRG.2409.1,STRG.2409.2,blat.proc3829871.chain_2575	3
scaffold_14	alt_donor	866155	866156	+	asmbl_11748	none	blat.proc3829879.chain_1427	1	STRG.16747.1,STRG.16747.2,STRG.16747.3,Trinity_GG_9198_c0_g1_i4,blat.proc3829879.chain_1428	5
scaffold_3	spliced_intron	1841145	1841393	+	asmbl_39846	none	STRG.3006.1,blat.proc3829871.chain_3188	2	STRG.3006.2,Trinity_GG_1707_c1_g1_i1,blat.proc3829871.chain_3189	3
scaffold_1	alt_donor	3641914	3641915	+	asmbl_1618	none	STRG.227.2	1	STRG.227.1,blat.proc3829871.chain_264	2
scaffold_4	alternate_exon	16804880	16804946	-	asmbl_41964,asmbl_41966	none	STRG.5267.1,Trinity_GG_19912_c0_g1_i4,blat.proc3829889.chain_1242,blat.proc3829889.chain_1243	4	STRG.5267.2,blat.proc3829889.chain_1241	2
scaffold_5	spliced_intron	14124559	14124669	-	asmbl_45968	none	STRG.6617.1	1	blat.proc3829873.chain_2715	1
scaffold_5	alt_donor	11990894	11990895	-	asmbl_45814	none	blat.proc3829889.chain_2522	1	STRG.6447.5	1
scaffold_3	spliced_intron	13175895	13175983	+	asmbl_40387,asmbl_40390,asmbl_40392,asmbl_40393,asmbl_40394	none	STRG.3679.1,STRG.3679.2,STRG.3679.3,blat.proc3829873.chain_76,blat.proc3829873.chain_78,blat.proc3829873.chain_79	6	blat.proc3829873.chain_77	1
scaffold_4	ends_in_intron	17113535	17113535	+	asmbl_43374	none	blat.proc3829873.chain_1587	1	STRG.5308.1,STRG.5308.3,STRG.5308.4,Trinity_GG_2943_c0_g1_i1,blat.proc3829873.chain_1585,blat.proc3829873.chain_1588	6
scaffold_13	retained_intron	4458969	4459061	+	asmbl_10776,asmbl_10779,asmbl_10781	none	STRG.15755.3,Trinity_GG_8663_c0_g1_i7,blat.proc3829879.chain_449,blat.proc3829879.chain_453	4	STRG.15755.1,STRG.15755.2,STRG.15755.4,Trinity_GG_8663_c0_g1_i6,blat.proc3829879.chain_448,blat.proc3829879.chain_450,blat.proc3829879.chain_451,blat.proc3829879.chain_452	8
scaffold_8	ends_in_intron	9587234	9587234	+	asmbl_52071,asmbl_52073	none	blat.proc3829875.chain_2710,blat.proc3829875.chain_2711	2	STRG.10207.3,blat.proc3829875.chain_2709,blat.proc3829875.chain_2713	3
scaffold_19	alternate_exon	8371	8525	+	asmbl_21971	none	STRG.21807.3	1	STRG.21807.1	1
scaffold_14	alternate_exon	15946339	15946417	+	asmbl_12635	none	STRG.17824.3	1	STRG.17824.1,STRG.17824.2	2
scaffold_13	retained_intron	6761797	6761991	+	asmbl_10955,asmbl_10958	none	STRG.15952.2,Trinity_GG_8761_c0_g1_i2,blat.proc3829879.chain_633,blat.proc3829879.chain_634	4	STRG.15952.1,blat.proc3829879.chain_632	2
scaffold_16	ends_in_intron	4044878	4044878	-	asmbl_16214	none	Trinity_GG_27799_c0_g1_i2,blat.proc3829897.chain_238	2	STRG.19210.2,blat.proc3829897.chain_236	2
scaffold_27	retained_intron	3000638	3000932	+	asmbl_36115	none	blat.proc3829885.chain_1849	1	STRG.28767.1,STRG.28767.2,STRG.28767.3,STRG.28767.4,STRG.28767.5,Trinity_GG_15918_c0_g1_i4,blat.proc3829885.chain_1838,blat.proc3829885.chain_1839,blat.proc3829885.chain_1841,blat.proc3829885.chain_1842,blat.proc3829885.chain_1843,blat.proc3829885.chain_1846,blat.proc3829885.chain_1847	13
scaffold_17	spliced_intron	9531029	9531393	+	asmbl_18230	none	STRG.20566.1,Trinity_GG_11250_c0_g1_i1,blat.proc3829881.chain_1355	3	STRG.20566.3,blat.proc3829881.chain_1347,blat.proc3829881.chain_1348,blat.proc3829881.chain_1354	4
scaffold_5	alt_donor	11630480	11630481	-	asmbl_45802	none	blat.proc3829889.chain_2529	1	blat.proc3829889.chain_2525	1
scaffold_14	spliced_intron	8338998	8339359	-	asmbl_13271	none	STRG.17245.1,blat.proc3829895.chain_1872	2	blat.proc3829895.chain_1873	1
scaffold_12	retained_intron	9861352	9861459	+	asmbl_8852	none	blat.proc3829877.chain_3376	1	STRG.14943.1,blat.proc3829877.chain_3375	2
scaffold_15	alt_acceptor	14513244	14513245	+	asmbl_14631,asmbl_14633	none	STRG.18853.1,STRG.18853.3,blat.proc3829879.chain_3442,blat.proc3829879.chain_3443	4	STRG.18853.2,blat.proc3829879.chain_3444	2
scaffold_9	retained_intron	16628131	16628261	-	asmbl_55557,asmbl_55558	none	STRG.11794.2,STRG.11794.4,blat.proc3829893.chain_174	3	STRG.11794.1,STRG.11794.3	2
scaffold_12	spliced_intron	6429911	6430170	+	asmbl_8647	none	STRG.14732.1,blat.proc3829877.chain_3159	2	blat.proc3829877.chain_3160	1
scaffold_13	spliced_intron	4458969	4459061	+	asmbl_10773,asmbl_10774,asmbl_10775,asmbl_10778,asmbl_10780	none	STRG.15755.1,STRG.15755.2,STRG.15755.4,Trinity_GG_8663_c0_g1_i6,blat.proc3829879.chain_448,blat.proc3829879.chain_450,blat.proc3829879.chain_451,blat.proc3829879.chain_452	8	STRG.15755.3,Trinity_GG_8663_c0_g1_i7,blat.proc3829879.chain_449,blat.proc3829879.chain_453	4
scaffold_16	starts_in_intron	5977471	5977471	+	asmbl_17053	none	Trinity_GG_10578_c1_g1_i3,blat.proc3829881.chain_184	2	STRG.19322.1,blat.proc3829881.chain_185	2
scaffold_3	starts_in_intron	17365376	17365376	-	asmbl_39505	none	blat.proc3829889.chain_30	1	STRG.3972.1,STRG.3972.3,STRG.3972.4,blat.proc3829889.chain_22,blat.proc3829889.chain_23,blat.proc3829889.chain_24,blat.proc3829889.chain_27,blat.proc3829889.chain_29	8
scaffold_5	starts_in_intron	10382487	10382487	-	asmbl_45737,asmbl_45738,asmbl_45739	none	STRG.6330.3,blat.proc3829889.chain_2440,blat.proc3829889.chain_2441	3	STRG.6330.1,STRG.6330.2	2
scaffold_4	alt_acceptor	5883121	5883122	-	asmbl_41384,asmbl_41386	none	STRG.4480.2,blat.proc3829889.chain_536,blat.proc3829889.chain_537	3	STRG.4480.1,blat.proc3829889.chain_538	2
scaffold_7	retained_intron	1236503	1236590	+	asmbl_50468,asmbl_50476,asmbl_50477,asmbl_50478,asmbl_50480	none	STRG.8627.3,STRG.8627.5,STRG.8627.6,STRG.8627.7,STRG.8627.9,Trinity_GG_4740_c1_g1_i1	6	STRG.8627.2,Trinity_GG_4740_c1_g1_i2	2
scaffold_16	alternate_exon	3869734	3870581	-	asmbl_16178	none	STRG.19184.1,blat.proc3829897.chain_217	2	STRG.19184.3	1
scaffold_10	retained_intron	16475945	16476026	-	asmbl_3908,asmbl_3911	none	STRG.13105.2,Trinity_GG_24363_c0_g1_i1,blat.proc3829893.chain_1614	3	STRG.13105.4	1
scaffold_21	alternate_exon	7812847	7812885	-	asmbl_27874	none	STRG.24304.3	1	STRG.24304.1,Trinity_GG_30558_c1_g1_i1,blat.proc3829899.chain_1366	3
scaffold_15	alt_acceptor	15188652	15188653	+	asmbl_14691	none	STRG.18906.3	1	STRG.18906.1,blat.proc3829879.chain_3474,blat.proc3829879.chain_3479,blat.proc3829879.chain_3482,blat.proc3829879.chain_3484	5
scaffold_3	starts_in_intron	1532018	1532018	-	asmbl_38672	none	STRG.2976.2	1	STRG.2976.1,blat.proc3829887.chain_2721	2
scaffold_8	skipped_exon	1339847	1341081	+	asmbl_51681	none	STRG.9754.1	1	blat.proc3829875.chain_2147	1
scaffold_15	ends_in_intron	2071754	2071754	-	asmbl_14996,asmbl_14997	none	STRG.17986.3,Trinity_GG_27104_c0_g1_i1,blat.proc3829895.chain_2679,blat.proc3829895.chain_2680	4	STRG.17986.1,STRG.17986.2	2
scaffold_13	alt_acceptor	13570401	13570402	+	asmbl_11376	none	Trinity_GG_9001_c0_g1_i1,Trinity_GG_9001_c0_g1_i2,blat.proc3829879.chain_1119	3	STRG.16402.1	1
scaffold_1	retained_intron	6973087	6973289	+	asmbl_1864	none	blat.proc3829871.chain_552	1	STRG.488.1,blat.proc3829871.chain_550,blat.proc3829871.chain_551,blat.proc3829871.chain_553	4
scaffold_28	alt_donor	7720311	7720312	+	asmbl_38397	none	STRG.29824.1,blat.proc3829885.chain_2923	2	Trinity_GG_16523_c1_g1_i1,Trinity_GG_16523_c1_g1_i2,blat.proc3829885.chain_2922,blat.proc3829885.chain_2926	4
scaffold_5	retained_intron	9086493	9086576	+	asmbl_44260	none	Trinity_GG_3425_c0_g1_i2,blat.proc3829873.chain_2420	2	STRG.6237.1,STRG.6237.4,STRG.6237.5,blat.proc3829873.chain_2418,blat.proc3829873.chain_2419,blat.proc3829873.chain_2421,blat.proc3829873.chain_2422,blat.proc3829873.chain_2423,blat.proc3829873.chain_2424,blat.proc3829873.chain_2426	10
scaffold_12	retained_exon	14225620	14225625	+	asmbl_9037	none	blat.proc3829877.chain_3639	1	STRG.15243.2	1
scaffold_10	ends_in_intron	714046	714046	-	asmbl_2908,asmbl_2909	none	Trinity_GG_23680_c0_g1_i6,blat.proc3829893.chain_435,blat.proc3829893.chain_438	3	STRG.11948.1,STRG.11948.2,Trinity_GG_23680_c0_g1_i4,Trinity_GG_23680_c0_g1_i7,blat.proc3829893.chain_434,blat.proc3829893.chain_436	6
scaffold_3	spliced_intron	6871188	6871289	+	asmbl_40104	none	STRG.3307.2	1	STRG.3307.1,blat.proc3829871.chain_3435	2
scaffold_10	ends_in_intron	7719531	7719531	+	asmbl_4582	none	blat.proc3829877.chain_1143	1	STRG.12550.1,blat.proc3829877.chain_1144,blat.proc3829877.chain_1145	3
scaffold_13	alt_donor	7014305	7014306	-	asmbl_9792	none	STRG.15993.2	1	STRG.15993.1,blat.proc3829895.chain_656,blat.proc3829895.chain_657	3
scaffold_4	alternate_exon	5191195	5191231	-	asmbl_41301	none	STRG.4410.1,blat.proc3829889.chain_521	2	STRG.4410.3,STRG.4410.4,blat.proc3829889.chain_523	3
scaffold_11	alt_acceptor	8485386	8485387	+	asmbl_5754	none	STRG.13855.1	1	STRG.13855.2,Trinity_GG_7642_c0_g1_i1,Trinity_GG_7642_c0_g1_i2,blat.proc3829877.chain_2350	4
scaffold_21	retained_intron	405731	406307	-	asmbl_27338,asmbl_27339,asmbl_27342,asmbl_27343	none	STRG.23722.1,STRG.23722.2,STRG.23722.3,Trinity_GG_30229_c0_g1_i1,Trinity_GG_30229_c0_g1_i2,blat.proc3829899.chain_768,blat.proc3829899.chain_769,blat.proc3829899.chain_772,blat.proc3829899.chain_773	9	STRG.23722.5,blat.proc3829899.chain_774	2
scaffold_6	alt_acceptor	12972183	12972184	+	asmbl_47396	none	STRG.8050.2,blat.proc3829875.chain_462	2	STRG.8050.1,STRG.8050.3,blat.proc3829875.chain_459,blat.proc3829875.chain_460,blat.proc3829875.chain_461	5
scaffold_11	alternate_exon	9831679	9834708	+	asmbl_5868,asmbl_5873	none	STRG.13996.2,blat.proc3829877.chain_2508,blat.proc3829877.chain_2512	3	blat.proc3829877.chain_2511	1
scaffold_24	alt_donor	4294806	4294807	-	asmbl_32856	none	STRG.26572.2,blat.proc3829899.chain_3632	2	STRG.26572.1,blat.proc3829899.chain_3631	2
scaffold_19	starts_in_intron	13217205	13217205	-	asmbl_21828	none	blat.proc3829897.chain_3373	1	STRG.22682.1,STRG.22682.3,Trinity_GG_29598_c1_g1_i10,Trinity_GG_29598_c1_g1_i2,Trinity_GG_29598_c1_g1_i4,Trinity_GG_29598_c1_g1_i7,blat.proc3829897.chain_3359,blat.proc3829897.chain_3360,blat.proc3829897.chain_3361,blat.proc3829897.chain_3362,blat.proc3829897.chain_3363,blat.proc3829897.chain_3364,blat.proc3829897.chain_3365,blat.proc3829897.chain_3366,blat.proc3829897.chain_3367,blat.proc3829897.chain_3368,blat.proc3829897.chain_3370	17
scaffold_1	alternate_exon	8762138	8765631	-	asmbl_504	none	STRG.579.1,blat.proc3829887.chain_485	2	STRG.579.2	1
scaffold_13	spliced_intron	3733773	3733964	+	asmbl_10714	none	STRG.15686.1,blat.proc3829879.chain_394	2	blat.proc3829879.chain_389,blat.proc3829879.chain_393	2
scaffold_8	alternate_exon	14535322	14535365	+	asmbl_52367	none	STRG.10527.2	1	STRG.10527.1,blat.proc3829875.chain_3023	2
scaffold_23	ends_in_intron	5202782	5202782	-	asmbl_31619	none	Trinity_GG_31492_c0_g1_i1,blat.proc3829899.chain_3000	2	STRG.25881.1,Trinity_GG_31492_c0_g1_i3,blat.proc3829899.chain_2999	3
scaffold_17	alt_acceptor	2534352	2534353	-	asmbl_18800,asmbl_18801	none	STRG.20035.1,STRG.20035.2,blat.proc3829897.chain_984,blat.proc3829897.chain_985	4	blat.proc3829897.chain_986	1
scaffold_8	alt_acceptor	9866265	9866266	+	asmbl_52101	none	STRG.10225.2	1	STRG.10225.4,blat.proc3829875.chain_2691,blat.proc3829875.chain_2693,blat.proc3829875.chain_2694,blat.proc3829875.chain_2695	5
scaffold_15	skipped_exon	3917413	3919012	+	asmbl_14057	none	STRG.18133.2	1	STRG.18133.1,Trinity_GG_9957_c1_g1_i1	2
scaffold_21	retained_intron	10990182	10990263	+	asmbl_28920	none	Trinity_GG_13538_c0_g1_i1,blat.proc3829883.chain_1557	2	STRG.24570.1	1
scaffold_1	skipped_exon	6283222	6283902	-	asmbl_341,asmbl_342,asmbl_349	none	STRG.425.2,blat.proc3829887.chain_330,blat.proc3829887.chain_333	3	STRG.425.1,STRG.425.3,STRG.425.4,blat.proc3829887.chain_328,blat.proc3829887.chain_334	5
scaffold_13	alt_donor	8116476	8116477	+	asmbl_11091	none	STRG.16080.1,Trinity_GG_8846_c0_g1_i1,blat.proc3829879.chain_830	3	STRG.16080.2,Trinity_GG_8846_c0_g1_i3,blat.proc3829879.chain_831	3
scaffold_18	starts_in_intron	5588778	5588778	+	asmbl_20624	none	STRG.21307.2	1	STRG.21307.1,blat.proc3829881.chain_2243	2
scaffold_10	alt_donor	3510530	3510531	+	asmbl_4332	none	STRG.12181.2	1	STRG.12181.3	1
scaffold_27	spliced_intron	3000034	3000124	+	asmbl_36110,asmbl_36111,asmbl_36113,asmbl_36115,asmbl_36117,asmbl_36118,asmbl_36119,asmbl_36121,asmbl_36122	none	STRG.28767.1,STRG.28767.2,STRG.28767.3,STRG.28767.4,STRG.28767.5,blat.proc3829885.chain_1838,blat.proc3829885.chain_1839,blat.proc3829885.chain_1841,blat.proc3829885.chain_1842,blat.proc3829885.chain_1843,blat.proc3829885.chain_1847,blat.proc3829885.chain_1849	12	blat.proc3829885.chain_1844,blat.proc3829885.chain_1848	2
scaffold_21	skipped_exon	5518491	5519924	-	asmbl_27691	none	blat.proc3829899.chain_1154	1	STRG.24069.1,blat.proc3829899.chain_1157	2
scaffold_20	skipped_exon	11599629	11600558	-	asmbl_27096	none	STRG.23657.2	1	STRG.23657.3	1
scaffold_1	skipped_exon	22371748	22373576	+	asmbl_2679	none	STRG.1490.1	1	STRG.1490.2,STRG.1490.3,STRG.1490.4,STRG.1490.5	4
scaffold_6	spliced_intron	11499265	11499368	+	asmbl_47273,asmbl_47274	none	STRG.7940.1,Trinity_GG_4344_c0_g2_i1,Trinity_GG_4344_c0_g2_i3,blat.proc3829875.chain_310,blat.proc3829875.chain_312	5	Trinity_GG_4344_c0_g1_i1,blat.proc3829875.chain_309	2
scaffold_10	starts_in_intron	2788532	2788532	-	asmbl_3047	none	STRG.12096.2,blat.proc3829893.chain_518	2	STRG.12096.1,Trinity_GG_23730_c0_g1_i4,Trinity_GG_23730_c0_g1_i5,blat.proc3829893.chain_515,blat.proc3829893.chain_516,blat.proc3829893.chain_517,blat.proc3829893.chain_519	7
scaffold_359	alt_acceptor	2500	2501	+	asmbl_41000	none	blat.proc3829885.chain_3321	1	STRG.30277.1	1
scaffold_15	alt_donor	1963729	1963730	+	asmbl_13984	none	blat.proc3829879.chain_2659	1	STRG.17971.3,blat.proc3829879.chain_2658	2
scaffold_12	retained_exon	1056309	1056406	+	asmbl_8420	none	STRG.14436.2	1	STRG.14436.3	1
scaffold_9	alt_acceptor	17851391	17851392	+	asmbl_54630	none	Trinity_GG_6607_c0_g1_i9,blat.proc3829877.chain_588	2	STRG.11860.2	1
scaffold_6	alternate_exon	11559600	11560512	-	asmbl_48696	none	STRG.7947.1,blat.proc3829891.chain_206	2	STRG.7947.3,blat.proc3829891.chain_207	2
scaffold_6	spliced_intron	3778396	3778632	+	asmbl_46796,asmbl_46799	none	STRG.7368.1,Trinity_GG_4054_c0_g1_i7,blat.proc3829873.chain_3516,blat.proc3829873.chain_3518	4	STRG.7368.2,STRG.7368.4,blat.proc3829873.chain_3517,blat.proc3829873.chain_3519	4
scaffold_15	spliced_intron	1965700	1966897	-	asmbl_14988	none	STRG.17972.2,blat.proc3829895.chain_2688	2	STRG.17972.3,Trinity_GG_27108_c0_g1_i1,blat.proc3829895.chain_2686,blat.proc3829895.chain_2687	4
scaffold_14	starts_in_intron	10000715	10000715	-	asmbl_13380,asmbl_13385	none	STRG.17356.2,Trinity_GG_26738_c0_g1_i1,blat.proc3829895.chain_2059,blat.proc3829895.chain_2063	4	STRG.17356.1,blat.proc3829895.chain_2060,blat.proc3829895.chain_2061,blat.proc3829895.chain_2062	4
scaffold_19	retained_intron	2785763	2785796	-	asmbl_21270	none	STRG.21954.1,Trinity_GG_29216_c0_g1_i1	2	STRG.21954.2	1
scaffold_28	retained_exon	1432997	1433103	-	asmbl_37313	none	STRG.29325.2,blat.proc3829901.chain_2399	2	STRG.29325.1,STRG.29325.3,blat.proc3829901.chain_2398	3
scaffold_12	spliced_intron	14104565	14104838	-	asmbl_8111,asmbl_8112,asmbl_8113,asmbl_8114	none	Trinity_GG_25546_c0_g1_i2,Trinity_GG_25546_c0_g1_i8,blat.proc3829893.chain_3677,blat.proc3829893.chain_3678,blat.proc3829893.chain_3679,blat.proc3829893.chain_3680	6	Trinity_GG_25546_c0_g1_i9,blat.proc3829893.chain_3681	2
scaffold_11	skipped_exon	11930763	11931395	-	asmbl_7021	none	STRG.14160.2	1	STRG.14160.1,STRG.14160.3,STRG.14160.4,STRG.14160.5	4
scaffold_23	ends_in_intron	1342635	1342635	+	asmbl_30627	none	Trinity_GG_14135_c0_g1_i2,blat.proc3829883.chain_2502	2	STRG.25584.1,blat.proc3829883.chain_2503	2
scaffold_2	retained_intron	16286701	16286808	+	asmbl_25141	none	blat.proc3829871.chain_2752	1	STRG.2560.1,STRG.2560.2,blat.proc3829871.chain_2749	3
scaffold_1	ends_in_intron	14077631	14077631	+	asmbl_2316	none	blat.proc3829871.chain_1103	1	STRG.999.2,blat.proc3829871.chain_1101	2
scaffold_4	alt_donor	4433998	4433999	+	asmbl_42598,asmbl_42599,asmbl_42601	none	STRG.4341.1,STRG.4341.2,STRG.4341.3,blat.proc3829873.chain_730,blat.proc3829873.chain_731	5	Trinity_GG_2418_c0_g1_i4,blat.proc3829873.chain_732	2
scaffold_21	skipped_exon	11272094	11272979	-	asmbl_28137	none	blat.proc3829899.chain_1690,blat.proc3829899.chain_1691,blat.proc3829899.chain_1695	3	STRG.24588.1,STRG.24588.2,blat.proc3829899.chain_1688,blat.proc3829899.chain_1689,blat.proc3829899.chain_1692	5
scaffold_27	starts_in_intron	4350630	4350630	+	asmbl_36234	none	blat.proc3829885.chain_1953	1	STRG.28871.1,blat.proc3829885.chain_1952	2
scaffold_14	skipped_exon	14147599	14148817	+	asmbl_12512	none	STRG.17676.1	1	STRG.17676.2,STRG.17676.3,STRG.17676.5,blat.proc3829879.chain_2283,blat.proc3829879.chain_2284	5
scaffold_16	starts_in_intron	8871749	8871749	-	asmbl_16442	none	blat.proc3829897.chain_461	1	STRG.19495.1,STRG.19495.2,blat.proc3829897.chain_462	3
scaffold_25	retained_intron	362923	362986	-	asmbl_33970	none	STRG.27060.1	1	blat.proc3829901.chain_393	1
scaffold_6	alt_acceptor	9152067	9152068	-	asmbl_48542,asmbl_48543	none	STRG.7783.2,STRG.7783.3	2	STRG.7783.1,blat.proc3829891.chain_44,blat.proc3829891.chain_45	3
scaffold_6	alt_acceptor	8581565	8581566	+	asmbl_47085,asmbl_47089	none	blat.proc3829875.chain_111,blat.proc3829875.chain_112	2	STRG.7732.2	1
scaffold_6	alt_donor	13918618	13918619	-	asmbl_48893	none	STRG.8132.6	1	STRG.8132.4,STRG.8132.5,Trinity_GG_21636_c1_g1_i2,blat.proc3829891.chain_441	4
scaffold_7	alt_donor	12053958	12053959	+	asmbl_51085,asmbl_51088	none	STRG.9298.2,Trinity_GG_5159_c0_g1_i4,blat.proc3829875.chain_1757	3	STRG.9298.1,blat.proc3829875.chain_1756	2
scaffold_13	retained_intron	6616931	6617079	+	asmbl_10937,asmbl_10940	none	STRG.15948.1,blat.proc3829879.chain_587,blat.proc3829879.chain_588	3	blat.proc3829879.chain_586	1
scaffold_7	retained_intron	12649977	12650680	-	asmbl_50076	none	STRG.9370.2,blat.proc3829891.chain_1620	2	STRG.9370.3	1
scaffold_1	retained_intron	5618829	5618888	+	asmbl_1726,asmbl_1727	none	STRG.352.1,STRG.352.2	2	STRG.352.3	1
scaffold_4	alt_acceptor	9978172	9978173	+	asmbl_42967	none	STRG.4756.2	1	STRG.4756.1	1
scaffold_9	starts_in_intron	17607580	17607580	-	asmbl_55626	none	blat.proc3829893.chain_186	1	STRG.11843.1,STRG.11843.2,blat.proc3829893.chain_181,blat.proc3829893.chain_182,blat.proc3829893.chain_183,blat.proc3829893.chain_184,blat.proc3829893.chain_185	7
scaffold_5	retained_intron	12755181	12755356	-	asmbl_45863	none	STRG.6501.2,Trinity_GG_20654_c1_g1_i2,blat.proc3829889.chain_2560	3	STRG.6501.1,blat.proc3829889.chain_2559	2
scaffold_9	alt_acceptor	17741810	17741811	+	asmbl_54615,asmbl_54616,asmbl_54618,asmbl_54619	none	STRG.11853.1,STRG.11853.3,blat.proc3829877.chain_523,blat.proc3829877.chain_525,blat.proc3829877.chain_526,blat.proc3829877.chain_527	6	STRG.11853.2,blat.proc3829877.chain_521	2
scaffold_14	spliced_intron	1614630	1615932	+	asmbl_11806	none	STRG.16791.4	1	STRG.16791.1,STRG.16791.2,STRG.16791.3,Trinity_GG_9256_c0_g1_i2,Trinity_GG_9256_c0_g1_i3,Trinity_GG_9256_c0_g1_i5,blat.proc3829879.chain_1536,blat.proc3829879.chain_1537,blat.proc3829879.chain_1538,blat.proc3829879.chain_1539	10
scaffold_17	spliced_intron	8319306	8319398	+	asmbl_18093,asmbl_18094,asmbl_18095,asmbl_18096,asmbl_18098,asmbl_18099,asmbl_18100,asmbl_18101	none	STRG.20443.1,STRG.20443.2,STRG.20443.3,Trinity_GG_11211_c0_g1_i1,blat.proc3829881.chain_1249,blat.proc3829881.chain_1250,blat.proc3829881.chain_1251,blat.proc3829881.chain_1252,blat.proc3829881.chain_1253	9	Trinity_GG_11211_c0_g1_i4,blat.proc3829881.chain_1248	2
scaffold_5	retained_intron	8070415	8070604	+	asmbl_44184,asmbl_44186	none	STRG.6161.2,STRG.6161.3,Trinity_GG_3334_c0_g1_i2,blat.proc3829873.chain_2256	4	STRG.6161.1,blat.proc3829873.chain_2255	2
scaffold_25	starts_in_intron	4466265	4466265	-	asmbl_34177	none	Trinity_GG_32318_c0_g1_i1	1	STRG.27360.1,STRG.27360.2	2
scaffold_22	alt_donor	10044840	10044841	-	asmbl_30348	none	STRG.25340.1	1	STRG.25340.2,STRG.25340.4	2
scaffold_28	retained_exon	539546	539623	-	asmbl_37232	none	STRG.29258.1,blat.proc3829901.chain_2296	2	STRG.29258.2,STRG.29258.3,blat.proc3829901.chain_2295,blat.proc3829901.chain_2297	4
scaffold_2	skipped_exon	14271302	14274032	+	asmbl_24926,asmbl_24927,asmbl_24932	none	STRG.2425.1,blat.proc3829871.chain_2541,blat.proc3829871.chain_2542,blat.proc3829871.chain_2544	4	STRG.2425.2,blat.proc3829871.chain_2547	2
scaffold_1	retained_intron	849299	849737	+	asmbl_1417	none	Trinity_GG_29_c0_g1_i4,blat.proc3829871.chain_53	2	STRG.41.2,STRG.41.4,STRG.41.5,Trinity_GG_29_c0_g1_i1,Trinity_GG_29_c0_g1_i3,blat.proc3829871.chain_50,blat.proc3829871.chain_51	7
scaffold_15	retained_exon	5743113	5743192	-	asmbl_15241,asmbl_15242	none	STRG.18248.1,STRG.18248.2	2	STRG.18248.3,STRG.18248.4	2
scaffold_2	ends_in_intron	1597812	1597812	+	asmbl_24234	none	Trinity_GG_905_c0_g1_i2,blat.proc3829871.chain_1670	2	STRG.1628.1,STRG.1628.2,STRG.1628.3,STRG.1628.4,blat.proc3829871.chain_1666,blat.proc3829871.chain_1668,blat.proc3829871.chain_1669	7
scaffold_26	alternate_exon	7486155	7486194	-	asmbl_34983	none	blat.proc3829901.chain_1528	1	STRG.28364.1,blat.proc3829901.chain_1526,blat.proc3829901.chain_1527	3
scaffold_3	retained_intron	2269178	2269345	+	asmbl_39859	none	STRG.3030.2,blat.proc3829871.chain_3212	2	STRG.3030.1,blat.proc3829871.chain_3213	2
scaffold_12	alternate_exon	10617874	10618341	-	asmbl_7896,asmbl_7898	none	STRG.15030.1,STRG.15030.3,blat.proc3829893.chain_3382	3	STRG.15030.2	1
scaffold_24	alt_donor	10484877	10484878	+	asmbl_32573	none	STRG.27000.5	1	STRG.27000.3,STRG.27000.4,Trinity_GG_14920_c0_g1_i4,blat.proc3829885.chain_129	4
scaffold_16	alternate_exon	8588146	8588182	+	asmbl_17216	none	STRG.19477.5	1	STRG.19477.1,STRG.19477.2,STRG.19477.3,STRG.19477.7,STRG.19477.8,blat.proc3829881.chain_353,blat.proc3829881.chain_354,blat.proc3829881.chain_355,blat.proc3829881.chain_357,blat.proc3829881.chain_359	10
scaffold_4	alt_donor	17122978	17122979	-	asmbl_42003,asmbl_42004	none	STRG.5310.2,STRG.5310.5	2	STRG.5310.1,STRG.5310.3,STRG.5310.4	3
scaffold_2	retained_intron	888658	888815	+	asmbl_24146	none	STRG.1564.3,Trinity_GG_856_c0_g1_i3,blat.proc3829871.chain_1548	3	STRG.1564.1,STRG.1564.2,STRG.1564.4,STRG.1564.5,blat.proc3829871.chain_1550	5
scaffold_19	retained_exon	9097972	9098075	+	asmbl_22373	none	STRG.22340.2	1	STRG.22340.1,blat.proc3829881.chain_3244	2
scaffold_19	starts_in_intron	13088822	13088822	-	asmbl_21811	none	Trinity_GG_29599_c0_g1_i1,blat.proc3829897.chain_3375	2	STRG.22612.2	1
scaffold_12	alt_donor	11335372	11335373	-	asmbl_7931	none	STRG.15058.2	1	STRG.15058.1	1
scaffold_21	starts_in_intron	3122338	3122338	-	asmbl_27541	none	STRG.23930.2,blat.proc3829899.chain_982	2	STRG.23930.1,STRG.23930.3,STRG.23930.4,STRG.23930.5,blat.proc3829899.chain_978,blat.proc3829899.chain_979,blat.proc3829899.chain_980,blat.proc3829899.chain_981	8
scaffold_8	alternate_exon	1127414	1134554	+	asmbl_51673	none	STRG.9742.3	1	STRG.9742.2	1
scaffold_8	retained_exon	11297315	11297361	+	asmbl_52206,asmbl_52207	none	STRG.10336.3,Trinity_GG_5757_c0_g1_i1,Trinity_GG_5757_c0_g1_i4,blat.proc3829875.chain_2856,blat.proc3829875.chain_2858	5	STRG.10336.1,STRG.10336.2,Trinity_GG_5757_c0_g1_i2,Trinity_GG_5757_c0_g1_i3,blat.proc3829875.chain_2855,blat.proc3829875.chain_2857	6
scaffold_25	retained_intron	6325008	6325126	-	asmbl_34330	none	Trinity_GG_32449_c0_g1_i7,blat.proc3829901.chain_863	2	STRG.27499.1,STRG.27499.2,STRG.27499.3,blat.proc3829901.chain_861,blat.proc3829901.chain_862,blat.proc3829901.chain_864,blat.proc3829901.chain_865	7
scaffold_20	ends_in_intron	9500010	9500010	+	asmbl_26010	none	blat.proc3829883.chain_527	1	STRG.23474.2,blat.proc3829883.chain_530	2
scaffold_7	alternate_exon	12451155	12451321	-	asmbl_50044	none	Trinity_GG_22282_c1_g1_i12,blat.proc3829891.chain_1610	2	STRG.9342.1,STRG.9342.2,STRG.9342.4,Trinity_GG_22282_c1_g1_i7,Trinity_GG_22282_c1_g1_i9,blat.proc3829891.chain_1604,blat.proc3829891.chain_1605,blat.proc3829891.chain_1606,blat.proc3829891.chain_1607,blat.proc3829891.chain_1608,blat.proc3829891.chain_1611,blat.proc3829891.chain_1614	12
scaffold_7	retained_intron	2515770	2515883	+	asmbl_50530	none	Trinity_GG_4775_c1_g1_i1,blat.proc3829875.chain_1110	2	Trinity_GG_4775_c1_g1_i2	1
scaffold_1	retained_exon	11174137	11174210	+	asmbl_2066	none	STRG.743.5,blat.proc3829871.chain_824	2	STRG.743.2,blat.proc3829871.chain_814	2
scaffold_7	alt_acceptor	142032	142033	-	asmbl_49489	none	STRG.8584.2	1	STRG.8584.1,blat.proc3829891.chain_936	2
scaffold_4	alt_acceptor	12628852	12628853	-	asmbl_41684	none	blat.proc3829889.chain_894	1	STRG.4901.2,blat.proc3829889.chain_895	2
scaffold_13	retained_intron	1230177	1230306	+	asmbl_10514,asmbl_10518,asmbl_10522	none	STRG.15478.1,STRG.15478.2,Trinity_GG_8526_c1_g1_i2,Trinity_GG_8526_c1_g1_i3,blat.proc3829879.chain_210,blat.proc3829879.chain_211	6	STRG.15478.3	1
scaffold_2	alt_acceptor	15650756	15650757	-	asmbl_23659	none	STRG.2515.1,blat.proc3829887.chain_2369	2	STRG.2515.2	1
scaffold_6	alternate_exon	14121185	14121505	+	asmbl_47520	none	STRG.8169.2	1	STRG.8169.1	1
scaffold_6	retained_exon	18210869	18210989	-	asmbl_49167	none	STRG.8489.1	1	STRG.8489.2	1
scaffold_25	starts_in_intron	9939637	9939637	-	asmbl_34498	none	blat.proc3829901.chain_1068	1	STRG.27802.1,STRG.27802.2	2
scaffold_4	alternate_exon	105272	105413	-	asmbl_41044	none	Trinity_GG_19304_c1_g1_i4,blat.proc3829889.chain_226	2	STRG.4109.1,blat.proc3829889.chain_228	2
scaffold_7	alt_donor	9716646	9716647	+	asmbl_50972	none	STRG.9150.1,blat.proc3829875.chain_1617	2	STRG.9150.2,blat.proc3829875.chain_1618	2
scaffold_16	starts_in_intron	14655594	14655594	-	asmbl_16670	none	Trinity_GG_28111_c0_g1_i2,blat.proc3829897.chain_742	2	STRG.19848.1,STRG.19848.2,blat.proc3829897.chain_741,blat.proc3829897.chain_743	4
scaffold_13	alt_acceptor	5127484	5127485	+	asmbl_10809,asmbl_10810	none	STRG.15801.2,STRG.15801.3	2	STRG.15801.1,blat.proc3829879.chain_497,blat.proc3829879.chain_498,blat.proc3829879.chain_499	4
scaffold_21	ends_in_intron	4100813	4100813	+	asmbl_28525	none	STRG.23984.3	1	STRG.23984.2,STRG.23984.4	2
scaffold_2	starts_in_intron	15509647	15509647	-	asmbl_23652	none	Trinity_GG_18380_c0_g1_i3,blat.proc3829887.chain_2330	2	STRG.2514.1	1
scaffold_19	retained_intron	13010263	13010705	-	asmbl_21795	none	Trinity_GG_29614_c1_g1_i1,blat.proc3829897.chain_3405	2	STRG.22610.1,STRG.22610.2,STRG.22610.3,STRG.22610.4,blat.proc3829897.chain_3402,blat.proc3829897.chain_3403,blat.proc3829897.chain_3404	7
scaffold_3	alternate_exon	1546634	1547844	+	asmbl_39815	none	STRG.2986.2,blat.proc3829871.chain_3100	2	STRG.2986.1,blat.proc3829871.chain_3099	2
scaffold_23	starts_in_intron	2310021	2310021	+	asmbl_30690	none	blat.proc3829883.chain_2532	1	STRG.25687.1,blat.proc3829883.chain_2529,blat.proc3829883.chain_2531	3
scaffold_6	starts_in_intron	4316696	4316696	+	asmbl_46822	none	STRG.7402.2	1	STRG.7402.1,blat.proc3829873.chain_3510,blat.proc3829873.chain_3512,blat.proc3829873.chain_3514	4
scaffold_15	alternate_exon	13655375	13655535	-	asmbl_15666	none	STRG.18784.1,blat.proc3829895.chain_3505	2	STRG.18784.3	1
scaffold_8	retained_intron	7508319	7508462	+	asmbl_51976	none	STRG.10068.2,Trinity_GG_5605_c0_g1_i1,blat.proc3829875.chain_2586	3	STRG.10068.1,blat.proc3829875.chain_2585	2
scaffold_14	alt_acceptor	15724462	15724463	-	asmbl_13723,asmbl_13724	none	STRG.17797.1,STRG.17797.2,blat.proc3829895.chain_2451	3	STRG.17797.3	1
scaffold_27	spliced_intron	129467	131958	-	asmbl_36587,asmbl_36588,asmbl_36592	none	STRG.28527.2,STRG.28527.3,blat.proc3829901.chain_1642,blat.proc3829901.chain_1644	4	STRG.28527.4,STRG.28527.5,blat.proc3829901.chain_1643,blat.proc3829901.chain_1646	4
scaffold_2	alternate_exon	14204349	14205043	-	asmbl_23587	none	STRG.2411.1,blat.proc3829887.chain_2297	2	STRG.2411.3,STRG.2411.4,blat.proc3829887.chain_2299	3
scaffold_17	retained_exon	604457	604498	-	asmbl_18673,asmbl_18674	none	STRG.19894.2,STRG.19894.3	2	STRG.19894.1	1
scaffold_18	alt_donor	1327623	1327624	+	asmbl_20363,asmbl_20365	none	STRG.21011.2,blat.proc3829881.chain_1878	2	STRG.21011.1,STRG.21011.3,blat.proc3829881.chain_1877,blat.proc3829881.chain_1880	4
scaffold_13	spliced_intron	738856	739027	+	asmbl_10482	none	STRG.15446.1,blat.proc3829879.chain_131	2	STRG.15446.2,blat.proc3829879.chain_133	2
scaffold_14	alt_donor	13380947	13380948	-	asmbl_13622	none	STRG.17613.1,blat.proc3829895.chain_2365	2	STRG.17613.2,blat.proc3829895.chain_2367,blat.proc3829895.chain_2368	3
scaffold_13	retained_intron	7935604	7935878	-	asmbl_9875,asmbl_9876	none	STRG.16055.2,STRG.16055.3,blat.proc3829895.chain_800,blat.proc3829895.chain_803	4	STRG.16055.1,blat.proc3829895.chain_798,blat.proc3829895.chain_799	3
scaffold_11	spliced_intron	8080714	8080789	+	asmbl_5678,asmbl_5679,asmbl_5681	none	STRG.13803.1,STRG.13803.2,Trinity_GG_7572_c0_g1_i1,Trinity_GG_7572_c0_g1_i2,Trinity_GG_7572_c0_g1_i3,blat.proc3829877.chain_2231,blat.proc3829877.chain_2232,blat.proc3829877.chain_2234	8	Trinity_GG_7572_c0_g1_i4,blat.proc3829877.chain_2233	2
scaffold_25	ends_in_intron	4328331	4328331	-	asmbl_34162	none	Trinity_GG_32331_c0_g1_i2,blat.proc3829901.chain_658	2	STRG.27346.1,Trinity_GG_32331_c0_g1_i1,blat.proc3829901.chain_659	3
scaffold_15	retained_intron	4494181	4494312	+	asmbl_14085,asmbl_14087	none	STRG.18165.2,blat.proc3829879.chain_2749	2	STRG.18165.1,blat.proc3829879.chain_2746,blat.proc3829879.chain_2747,blat.proc3829879.chain_2748,blat.proc3829879.chain_2750	5
scaffold_23	alternate_exon	810025	810321	-	asmbl_31328	none	STRG.25556.2	1	STRG.25556.1	1
scaffold_5	alt_donor	9335560	9335561	-	asmbl_45655	none	Trinity_GG_20523_c0_g1_i1,blat.proc3829889.chain_2309	2	STRG.6248.1	1
scaffold_24	retained_intron	8736275	8736426	-	asmbl_33087,asmbl_33090	none	STRG.26873.2,blat.proc3829901.chain_170	2	STRG.26873.1,blat.proc3829901.chain_171,blat.proc3829901.chain_172,blat.proc3829901.chain_173	4
scaffold_7	spliced_intron	12451061	12451154	-	asmbl_50044	none	Trinity_GG_22282_c1_g1_i12,blat.proc3829891.chain_1610	2	Trinity_GG_22282_c1_g1_i3,blat.proc3829891.chain_1613	2
scaffold_18	retained_intron	822928	823047	+	asmbl_20355	none	blat.proc3829881.chain_1779	1	STRG.20996.1,STRG.20996.2,blat.proc3829881.chain_1778,blat.proc3829881.chain_1781,blat.proc3829881.chain_1782	5
scaffold_7	ends_in_intron	4045835	4045835	-	asmbl_49660	none	STRG.8793.2,Trinity_GG_22021_c0_g1_i1,blat.proc3829891.chain_1136	3	STRG.8793.1,blat.proc3829891.chain_1134	2
scaffold_17	alt_acceptor	11035527	11035528	-	asmbl_19314	none	STRG.20653.4	1	STRG.20653.2,STRG.20653.3,blat.proc3829897.chain_1607	3
scaffold_7	spliced_intron	9921560	9921694	-	asmbl_49913,asmbl_49914	none	STRG.9192.1,Trinity_GG_22211_c0_g1_i1,blat.proc3829891.chain_1457,blat.proc3829891.chain_1459	4	blat.proc3829891.chain_1456	1
scaffold_6	alternate_exon	12116756	12116975	+	asmbl_47309	none	STRG.7978.3,Trinity_GG_4362_c0_g1_i5,blat.proc3829875.chain_359	3	STRG.7978.1,STRG.7978.2,blat.proc3829875.chain_358	3
scaffold_12	spliced_intron	15425104	15425462	-	asmbl_8217,asmbl_8219,asmbl_8220	none	STRG.15330.1,blat.proc3829895.chain_68,blat.proc3829895.chain_69,blat.proc3829895.chain_70	4	blat.proc3829895.chain_67	1
scaffold_11	retained_intron	13256116	13256322	+	asmbl_6018	none	STRG.14184.1,blat.proc3829877.chain_2654	2	STRG.14184.3	1
scaffold_9	alternate_exon	12178787	12178843	+	asmbl_54397	none	STRG.11525.2,Trinity_GG_6445_c0_g1_i1,blat.proc3829877.chain_322	3	STRG.11525.1	1
scaffold_9	alt_acceptor	4674851	4674852	+	asmbl_53935	none	STRG.11030.2,Trinity_GG_6103_c0_g1_i2,blat.proc3829875.chain_3444	3	STRG.11030.1,Trinity_GG_6103_c0_g1_i1,blat.proc3829875.chain_3445	3
scaffold_27	alt_donor	2554056	2554057	-	asmbl_36780	none	STRG.28710.1,blat.proc3829901.chain_1864	2	STRG.28710.2,blat.proc3829901.chain_1863	2
scaffold_16	skipped_exon	5958928	5960591	+	asmbl_17041	none	STRG.19319.2	1	STRG.19319.3	1
scaffold_15	retained_intron	4491295	4491494	+	asmbl_14089	none	blat.proc3829879.chain_2746	1	STRG.18165.1,STRG.18165.2,blat.proc3829879.chain_2747,blat.proc3829879.chain_2748,blat.proc3829879.chain_2749,blat.proc3829879.chain_2750,blat.proc3829879.chain_2752	7
scaffold_5	alt_donor	3592651	3592652	-	asmbl_45309,asmbl_45311,asmbl_45312	none	STRG.5822.2,STRG.5822.4,STRG.5822.5,blat.proc3829889.chain_1927	4	STRG.5822.3,blat.proc3829889.chain_1928	2
scaffold_6	retained_intron	8175225	8175459	-	asmbl_48472,asmbl_48475,asmbl_48476,asmbl_48480	none	STRG.7691.1,STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3719,blat.proc3829889.chain_3721,blat.proc3829889.chain_3724	6	blat.proc3829889.chain_3716,blat.proc3829889.chain_3720	2
scaffold_4	alt_acceptor	13184627	13184628	-	asmbl_41724	none	STRG.4963.3,blat.proc3829889.chain_1038	2	STRG.4963.1,blat.proc3829889.chain_1036	2
scaffold_9	alt_acceptor	9656874	9656875	+	asmbl_54210	none	blat.proc3829877.chain_101	1	blat.proc3829877.chain_99	1
scaffold_8	spliced_intron	11580799	11580896	+	asmbl_52228,asmbl_52229	none	STRG.10355.1,blat.proc3829875.chain_2769,blat.proc3829875.chain_2770	3	blat.proc3829875.chain_2771	1
scaffold_6	spliced_intron	1345974	1346244	-	asmbl_48042,asmbl_48045	none	STRG.7176.2,STRG.7176.3,blat.proc3829889.chain_3156	3	STRG.7176.1,Trinity_GG_21023_c0_g1_i3,blat.proc3829889.chain_3157,blat.proc3829889.chain_3158	4
scaffold_22	alt_acceptor	6841027	6841028	-	asmbl_30103	none	blat.proc3829899.chain_2043,blat.proc3829899.chain_2046	2	blat.proc3829899.chain_2044	1
scaffold_2	skipped_exon	11258679	11259299	+	asmbl_24784	none	STRG.2255.3	1	STRG.2255.1,STRG.2255.2,blat.proc3829871.chain_2294,blat.proc3829871.chain_2295	4
scaffold_20	retained_intron	5922620	5922744	-	asmbl_26707	none	STRG.23184.4,Trinity_GG_29901_c0_g1_i3,blat.proc3829899.chain_126	3	STRG.23184.1,STRG.23184.2,STRG.23184.3,blat.proc3829899.chain_125,blat.proc3829899.chain_127	5
scaffold_21	spliced_intron	1054629	1054775	-	asmbl_27404,asmbl_27407	none	STRG.23776.4,Trinity_GG_30261_c0_g1_i9,blat.proc3829899.chain_854	3	STRG.23776.1,STRG.23776.2,STRG.23776.3,Trinity_GG_30261_c0_g1_i11,Trinity_GG_30261_c0_g1_i4,blat.proc3829899.chain_850,blat.proc3829899.chain_852	7
scaffold_23	skipped_exon	2633997	2635130	+	asmbl_30713	none	STRG.25710.3	1	STRG.25710.1,STRG.25710.2,Trinity_GG_14194_c0_g1_i5,blat.proc3829883.chain_2619	4
scaffold_4	starts_in_intron	4910277	4910277	+	asmbl_42643	none	Trinity_GG_2443_c0_g1_i4,blat.proc3829873.chain_778	2	STRG.4386.1,STRG.4386.2,STRG.4386.3,blat.proc3829873.chain_780	4
scaffold_19	alt_acceptor	10858078	10858079	-	asmbl_21573	none	STRG.22418.2,blat.proc3829897.chain_3021	2	STRG.22418.1	1
scaffold_8	spliced_intron	11760968	11761438	-	asmbl_53163	none	STRG.10372.2	1	STRG.10372.1,blat.proc3829891.chain_2447	2
scaffold_1	spliced_intron	20134536	20134559	-	asmbl_1170	none	STRG.1381.1	1	Trinity_GG_17776_c0_g1_i1	1
scaffold_28	starts_in_intron	3523492	3523492	-	asmbl_37481	none	blat.proc3829901.chain_2648	1	STRG.29548.1	1
scaffold_26	retained_intron	902781	902905	+	asmbl_35239,asmbl_35241	none	STRG.27880.2,Trinity_GG_15392_c0_g1_i2,blat.proc3829885.chain_889	3	STRG.27880.1,Trinity_GG_15392_c0_g1_i1,blat.proc3829885.chain_886,blat.proc3829885.chain_888	4
scaffold_7	alt_acceptor	8173615	8173616	+	asmbl_50842	none	STRG.9039.3,Trinity_GG_5002_c0_g2_i2,blat.proc3829875.chain_1469	3	STRG.9039.1,blat.proc3829875.chain_1470	2
scaffold_10	spliced_intron	13525424	13525835	-	asmbl_3799	none	STRG.12938.1,blat.proc3829893.chain_1429	2	blat.proc3829893.chain_1430	1
scaffold_27	spliced_intron	2792841	2792968	+	asmbl_36071,asmbl_36072,asmbl_36073	none	STRG.28740.1,blat.proc3829885.chain_1813,blat.proc3829885.chain_1814	3	STRG.28740.2	1
scaffold_10	retained_intron	5495263	5495288	+	asmbl_4455	none	Trinity_GG_6856_c0_g1_i2	1	STRG.12374.1,blat.proc3829877.chain_1006	2
scaffold_19	starts_in_intron	11484386	11484386	-	asmbl_21616	none	blat.proc3829897.chain_3186	1	STRG.22477.1,STRG.22477.3,blat.proc3829897.chain_3181,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184,blat.proc3829897.chain_3187,blat.proc3829897.chain_3192,blat.proc3829897.chain_3193	8
scaffold_11	alt_acceptor	15711192	15711193	+	asmbl_6106,asmbl_6108	none	STRG.14304.1,blat.proc3829877.chain_2782,blat.proc3829877.chain_2784	3	blat.proc3829877.chain_2783	1
scaffold_12	starts_in_intron	7278921	7278921	-	asmbl_7699	none	STRG.14788.2	1	STRG.14788.1	1
scaffold_11	retained_exon	3497229	3497549	+	asmbl_5398,asmbl_5402	none	STRG.13472.2,blat.proc3829877.chain_1902	2	STRG.13472.3	1
scaffold_4	skipped_exon	19679866	19680199	+	asmbl_43501	none	STRG.5556.3,Trinity_GG_3040_c0_g1_i2,blat.proc3829873.chain_1750	3	STRG.5556.1,STRG.5556.2,Trinity_GG_3040_c0_g1_i3,blat.proc3829873.chain_1749	4
scaffold_14	alt_acceptor	5947849	5947850	-	asmbl_13086	none	STRG.17043.1,blat.proc3829895.chain_1719	2	STRG.17043.2	1
scaffold_1	retained_intron	5962642	5962827	-	asmbl_311	none	blat.proc3829887.chain_272	1	blat.proc3829887.chain_270	1
scaffold_6	spliced_intron	13917524	13917641	-	asmbl_48892,asmbl_48894,asmbl_48895,asmbl_48896	none	STRG.8132.1,STRG.8132.2,STRG.8132.3,STRG.8132.5,blat.proc3829891.chain_438,blat.proc3829891.chain_439	6	STRG.8132.4,blat.proc3829891.chain_440	2
scaffold_13	spliced_intron	7266430	7266595	-	asmbl_9829,asmbl_9830,asmbl_9831	none	STRG.16009.1,blat.proc3829895.chain_807,blat.proc3829895.chain_808,blat.proc3829895.chain_809	4	blat.proc3829895.chain_811	1
scaffold_13	retained_intron	9608243	9608361	+	asmbl_11199	none	blat.proc3829879.chain_966	1	STRG.16213.1,blat.proc3829879.chain_964,blat.proc3829879.chain_965	3
scaffold_15	alt_donor	2563217	2563218	+	asmbl_14004,asmbl_14006	none	STRG.18036.1,STRG.18036.3	2	STRG.18036.2	1
scaffold_25	spliced_intron	8709541	8709662	+	asmbl_33746,asmbl_33747,asmbl_33749,asmbl_33750,asmbl_33751	none	STRG.27679.1,STRG.27679.2,STRG.27679.3,Trinity_GG_15273_c0_g1_i11,Trinity_GG_15273_c0_g1_i7,blat.proc3829885.chain_693,blat.proc3829885.chain_703	7	Trinity_GG_15273_c0_g1_i1,blat.proc3829885.chain_696	2
scaffold_397	ends_in_intron	2044	2044	-	asmbl_41035	none	Trinity_GG_33995_c0_g1_i2,blat.proc3829901.chain_3351	2	STRG.30282.2	1
scaffold_11	starts_in_intron	13552015	13552015	-	asmbl_7116	none	blat.proc3829893.chain_2648	1	STRG.14200.1,blat.proc3829893.chain_2650,blat.proc3829893.chain_2651	3
scaffold_6	ends_in_intron	13200418	13200418	+	asmbl_47427	none	STRG.8074.2,blat.proc3829875.chain_517	2	STRG.8074.1,blat.proc3829875.chain_515	2
scaffold_23	spliced_intron	6632892	6633001	+	asmbl_30928,asmbl_30930,asmbl_30931,asmbl_30932,asmbl_30933,asmbl_30934,asmbl_30935	none	STRG.25985.1,STRG.25985.2,blat.proc3829883.chain_2811,blat.proc3829883.chain_2813,blat.proc3829883.chain_2814,blat.proc3829883.chain_2815,blat.proc3829883.chain_2816,blat.proc3829883.chain_2817	8	blat.proc3829883.chain_2812	1
scaffold_27	spliced_intron	3104389	3104460	+	asmbl_36145	none	STRG.28777.1,blat.proc3829885.chain_1790	2	blat.proc3829885.chain_1792	1
scaffold_6	spliced_intron	18691242	18691696	+	asmbl_47783,asmbl_47784,asmbl_47786	none	STRG.8528.1,STRG.8528.2,Trinity_GG_4699_c0_g1_i2,Trinity_GG_4699_c0_g1_i3,blat.proc3829875.chain_959,blat.proc3829875.chain_960	6	Trinity_GG_4699_c0_g1_i1,blat.proc3829875.chain_961	2
scaffold_25	ends_in_intron	9118041	9118041	+	asmbl_33774	none	STRG.27709.1,blat.proc3829885.chain_760	2	STRG.27709.2,STRG.27709.3,blat.proc3829885.chain_759	3
scaffold_9	alt_acceptor	16631195	16631196	+	asmbl_54592	none	STRG.11796.1,Trinity_GG_6584_c0_g1_i2,blat.proc3829877.chain_549	3	STRG.11796.2,Trinity_GG_6584_c0_g1_i1,blat.proc3829877.chain_548	3
scaffold_23	ends_in_intron	7064399	7064399	+	asmbl_30967	none	blat.proc3829883.chain_2866	1	STRG.26014.1,blat.proc3829883.chain_2865	2
scaffold_7	retained_exon	17610793	17610957	+	asmbl_51370	none	STRG.9601.2	1	STRG.9601.1,blat.proc3829875.chain_2006	2
scaffold_3	ends_in_intron	13160798	13160798	+	asmbl_40382	none	Trinity_GG_2042_c0_g1_i2,blat.proc3829873.chain_38	2	STRG.3678.1,STRG.3678.2,STRG.3678.3,STRG.3678.4,blat.proc3829873.chain_36,blat.proc3829873.chain_37,blat.proc3829873.chain_39	7
scaffold_11	retained_exon	2845822	2845940	-	asmbl_6494	none	STRG.13416.1,Trinity_GG_24535_c0_g1_i1,Trinity_GG_24535_c0_g2_i1,blat.proc3829893.chain_1896,blat.proc3829893.chain_1897	5	STRG.13416.2	1
scaffold_18	retained_intron	13804460	13804704	+	asmbl_21056,asmbl_21059	none	Trinity_GG_12056_c0_g1_i2,blat.proc3829881.chain_2756,blat.proc3829881.chain_2757	3	STRG.21804.1,STRG.21804.2,Trinity_GG_12056_c0_g1_i3,blat.proc3829881.chain_2755,blat.proc3829881.chain_2758	5
scaffold_340	spliced_intron	2528	2711	+	asmbl_40963,asmbl_40964,asmbl_40965,asmbl_40966,asmbl_40967	none	STRG.30267.1,STRG.30267.2,STRG.30267.3,STRG.30267.4,blat.proc3829885.chain_3313,blat.proc3829893.chain_1073	6	Trinity_GG_24043_c0_g1_i3,blat.proc3829893.chain_1074	2
scaffold_12	alt_donor	6519560	6519561	+	asmbl_8653	none	STRG.14738.1	1	STRG.14738.2	1
scaffold_13	spliced_intron	2570778	2570949	+	asmbl_10609,asmbl_10610,asmbl_10612,asmbl_10614	none	STRG.15550.1,Trinity_GG_8519_c0_g1_i1,Trinity_GG_8519_c0_g1_i3,blat.proc3829879.chain_189,blat.proc3829879.chain_191,blat.proc3829879.chain_192,blat.proc3829879.chain_195	7	Trinity_GG_8519_c0_g1_i8,blat.proc3829879.chain_188,blat.proc3829879.chain_190,blat.proc3829879.chain_193,blat.proc3829879.chain_194	5
scaffold_12	retained_intron	9687346	9687437	-	asmbl_7819	none	Trinity_GG_25344_c0_g1_i2,blat.proc3829893.chain_3333	2	STRG.14929.1,STRG.14929.3,STRG.14929.5,blat.proc3829893.chain_3332	4
scaffold_28	alt_acceptor	4704615	4704616	-	asmbl_37544	none	STRG.29617.1,blat.proc3829901.chain_2743	2	STRG.29617.2	1
scaffold_27	alt_acceptor	4939044	4939045	+	asmbl_36282,asmbl_36283,asmbl_36284,asmbl_36286,asmbl_36287,asmbl_36288	none	STRG.28914.1,STRG.28914.2,STRG.28914.3,STRG.28914.4,STRG.28914.5,blat.proc3829885.chain_2065,blat.proc3829885.chain_2066	7	STRG.28914.6	1
scaffold_7	alt_donor	5917053	5917054	-	asmbl_49718	none	blat.proc3829891.chain_1167	1	STRG.8887.1,STRG.8887.2,STRG.8887.3,STRG.8887.4,STRG.8887.5,Trinity_GG_22041_c0_g1_i6,blat.proc3829891.chain_1163,blat.proc3829891.chain_1164,blat.proc3829891.chain_1165,blat.proc3829891.chain_1166,blat.proc3829891.chain_1168	11
scaffold_13	alternate_exon	14152673	14153978	+	asmbl_11403	none	STRG.16445.1,Trinity_GG_9078_c0_g1_i1,blat.proc3829879.chain_1230	3	blat.proc3829879.chain_1227	1
scaffold_1	alt_acceptor	10950930	10950931	+	asmbl_2025,asmbl_2027	none	STRG.713.1,STRG.713.3,blat.proc3829871.chain_749,blat.proc3829871.chain_751	4	blat.proc3829871.chain_750,blat.proc3829871.chain_752	2
scaffold_9	alternate_exon	8586951	8586975	-	asmbl_55103	none	STRG.11258.1	1	STRG.11258.2,blat.proc3829891.chain_3408	2
scaffold_17	alternate_exon	8340384	8340518	+	asmbl_18112	none	STRG.20445.2	1	STRG.20445.1	1
scaffold_15	spliced_intron	5835875	5836379	+	asmbl_14170	none	Trinity_GG_10010_c0_g2_i1,blat.proc3829879.chain_2884	2	STRG.18253.1,Trinity_GG_10010_c0_g1_i1,blat.proc3829879.chain_2883	3
scaffold_7	alternate_exon	4048631	4048661	+	asmbl_50593	none	STRG.8794.2,Trinity_GG_4791_c0_g1_i2	2	STRG.8794.1,Trinity_GG_4791_c0_g1_i1	2
scaffold_9	retained_intron	6240560	6240600	-	asmbl_55010	none	Trinity_GG_23172_c0_g1_i2,blat.proc3829891.chain_3267	2	STRG.11151.1,blat.proc3829891.chain_3266	2
scaffold_6	starts_in_intron	3350541	3350541	+	asmbl_46781	none	Trinity_GG_4016_c0_g1_i3,blat.proc3829873.chain_3453	2	STRG.7336.1,STRG.7336.2	2
scaffold_7	retained_intron	12437984	12438059	+	asmbl_51145	none	blat.proc3829875.chain_1796	1	STRG.9337.1,STRG.9337.2,blat.proc3829875.chain_1797	3
scaffold_9	alt_donor	13297315	13297316	-	asmbl_55381,asmbl_55383,asmbl_55385	none	STRG.11625.1,STRG.11625.2,STRG.11625.7	3	STRG.11625.3,STRG.11625.4,STRG.11625.5,STRG.11625.6	4
scaffold_22	alternate_exon	232031	232084	-	asmbl_29838	none	Trinity_GG_30815_c0_g1_i3,blat.proc3829899.chain_1816	2	STRG.24671.1,STRG.24671.3,Trinity_GG_30815_c0_g1_i1,Trinity_GG_30815_c0_g1_i2,blat.proc3829899.chain_1813,blat.proc3829899.chain_1814	6
scaffold_21	ends_in_intron	7429510	7429510	-	asmbl_27836	none	blat.proc3829899.chain_1319	1	STRG.24251.1,blat.proc3829899.chain_1320	2
scaffold_26	alt_donor	2942392	2942393	-	asmbl_34729	none	STRG.27965.2	1	STRG.27965.1	1
scaffold_14	retained_exon	14147748	14147954	+	asmbl_12509,asmbl_12514	none	STRG.17676.2,blat.proc3829879.chain_2283,blat.proc3829879.chain_2284	3	STRG.17676.1	1
scaffold_14	ends_in_intron	12760575	12760575	-	asmbl_13585,asmbl_13587	none	STRG.17572.4,STRG.17572.5	2	STRG.17572.1,blat.proc3829895.chain_2360,blat.proc3829895.chain_2361,blat.proc3829895.chain_2363	4
scaffold_5	alternate_exon	13097577	13097598	+	asmbl_44525	none	STRG.6535.1	1	STRG.6535.2	1
scaffold_24	retained_intron	8736860	8737041	-	asmbl_33087,asmbl_33090	none	STRG.26873.2,blat.proc3829901.chain_170	2	STRG.26873.1,blat.proc3829901.chain_171,blat.proc3829901.chain_172,blat.proc3829901.chain_173	4
scaffold_5	alt_acceptor	17843985	17843986	-	asmbl_46192	none	STRG.6923.2	1	STRG.6923.1,Trinity_GG_20873_c0_g1_i1,blat.proc3829889.chain_2926	3
scaffold_23	alternate_exon	7875352	7875587	-	asmbl_31768	none	STRG.26073.1,blat.proc3829899.chain_3181	2	STRG.26073.2,blat.proc3829899.chain_3179	2
scaffold_16	alternate_exon	14486640	14486677	+	asmbl_17486	none	blat.proc3829881.chain_702	1	STRG.19814.1,blat.proc3829881.chain_700,blat.proc3829881.chain_701	3
scaffold_14	skipped_exon	15565811	15565918	+	asmbl_12608	none	STRG.17784.3	1	blat.proc3829879.chain_2468	1
scaffold_13	starts_in_intron	12105316	12105316	+	asmbl_11317	none	Trinity_GG_8989_c0_g1_i4	1	STRG.16334.1,STRG.16334.2,Trinity_GG_8989_c0_g1_i1,blat.proc3829879.chain_1102	4
scaffold_13	alt_acceptor	6050033	6050034	-	asmbl_9729	none	blat.proc3829895.chain_628	1	STRG.15900.2,STRG.15900.4,STRG.15900.5,blat.proc3829895.chain_629,blat.proc3829895.chain_630	5
scaffold_16	alt_acceptor	7503120	7503121	-	asmbl_16359	none	STRG.19389.2	1	STRG.19389.1,Trinity_GG_27903_c0_g1_i1,blat.proc3829897.chain_436	3
scaffold_8	starts_in_intron	6119677	6119677	+	asmbl_51931	none	Trinity_GG_5582_c0_g1_i6	1	STRG.10007.1,STRG.10007.2,Trinity_GG_5582_c0_g1_i7,blat.proc3829875.chain_2524,blat.proc3829875.chain_2527	5
scaffold_13	retained_intron	398875	400049	-	asmbl_9312,asmbl_9313	none	Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i25,blat.proc3829895.chain_223,blat.proc3829895.chain_229	4	STRG.15428.1,STRG.15428.2,STRG.15428.3,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i7,Trinity_GG_25691_c0_g1_i8,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_220,blat.proc3829895.chain_221,blat.proc3829895.chain_222,blat.proc3829895.chain_224,blat.proc3829895.chain_226,blat.proc3829895.chain_230,blat.proc3829895.chain_232,blat.proc3829895.chain_233	17
scaffold_22	spliced_intron	7341577	7341665	+	asmbl_29464	none	STRG.25048.1,blat.proc3829883.chain_2065	2	blat.proc3829883.chain_2064	1
scaffold_17	alt_donor	12223395	12223396	-	asmbl_19368	none	STRG.20749.2	1	STRG.20749.1,blat.proc3829897.chain_1685	2
scaffold_12	ends_in_intron	1066535	1066535	-	asmbl_7427	none	Trinity_GG_25065_c0_g1_i2,blat.proc3829893.chain_2842	2	STRG.14439.1,blat.proc3829893.chain_2841,blat.proc3829893.chain_2843	3
scaffold_12	retained_exon	15212685	15212743	+	asmbl_9076,asmbl_9077	none	STRG.15307.1,STRG.15307.2,Trinity_GG_8383_c0_g1_i1,Trinity_GG_8383_c0_g1_i2,blat.proc3829877.chain_3665,blat.proc3829877.chain_3666	6	STRG.15307.3,Trinity_GG_8383_c0_g1_i3,blat.proc3829877.chain_3663	3
scaffold_21	alt_donor	257072	257073	-	asmbl_27316	none	STRG.23718.8,blat.proc3829899.chain_781	2	STRG.23718.1,STRG.23718.7,Trinity_GG_30232_c0_g1_i4,blat.proc3829899.chain_786,blat.proc3829899.chain_790,blat.proc3829899.chain_791,blat.proc3829899.chain_794	7
scaffold_10	alt_donor	7120650	7120651	-	asmbl_3446	none	STRG.12522.1,blat.proc3829893.chain_951	2	STRG.12522.2	1
scaffold_14	alt_donor	12592555	12592556	+	asmbl_12414,asmbl_12417	none	STRG.17564.1,STRG.17564.2,blat.proc3829879.chain_2189	3	STRG.17564.3,STRG.17564.4,blat.proc3829879.chain_2187	3
scaffold_9	retained_exon	6741724	6741829	-	asmbl_55035,asmbl_55036	none	STRG.11176.2,blat.proc3829891.chain_3304	2	STRG.11176.1,blat.proc3829891.chain_3303	2
scaffold_21	retained_exon	256485	256741	-	asmbl_27314,asmbl_27315,asmbl_27318,asmbl_27319,asmbl_27320,asmbl_27321	none	STRG.23718.2,STRG.23718.3,STRG.23718.4,STRG.23718.5,STRG.23718.6,blat.proc3829899.chain_782,blat.proc3829899.chain_783,blat.proc3829899.chain_785,blat.proc3829899.chain_787,blat.proc3829899.chain_788	10	STRG.23718.8,blat.proc3829899.chain_781	2
scaffold_4	ends_in_intron	3340591	3340591	+	asmbl_42507	none	STRG.4264.2,Trinity_GG_2387_c0_g1_i1,blat.proc3829873.chain_643	3	STRG.4264.1,STRG.4264.3,Trinity_GG_2387_c0_g1_i2,blat.proc3829873.chain_642	4
scaffold_1	alt_acceptor	10857895	10857896	+	asmbl_2024	none	STRG.709.3	1	STRG.709.1,blat.proc3829871.chain_772	2
scaffold_17	alt_acceptor	5507358	5507359	-	asmbl_18983	none	STRG.20258.1	1	STRG.20258.2	1
scaffold_25	skipped_exon	3722400	3724710	+	asmbl_33455,asmbl_33456	none	STRG.27303.2,STRG.27303.3,blat.proc3829885.chain_330	3	STRG.27303.1,blat.proc3829885.chain_329	2
scaffold_14	ends_in_intron	6734307	6734307	-	asmbl_13140	none	blat.proc3829895.chain_1802	1	STRG.17104.1,blat.proc3829895.chain_1801	2
scaffold_8	starts_in_intron	4185275	4185275	+	asmbl_51806	none	blat.proc3829875.chain_2408	1	STRG.9886.1,Trinity_GG_5520_c0_g1_i6,blat.proc3829875.chain_2405,blat.proc3829875.chain_2406,blat.proc3829875.chain_2409	5
scaffold_14	alt_acceptor	11386909	11386910	-	asmbl_13460,asmbl_13462,asmbl_13464	none	STRG.17457.1,STRG.17457.2,blat.proc3829895.chain_2096,blat.proc3829895.chain_2098	4	STRG.17457.3,blat.proc3829895.chain_2095	2
scaffold_16	alternate_exon	13213506	13216830	+	asmbl_17459	none	STRG.19770.3	1	blat.proc3829881.chain_600	1
scaffold_3	alt_donor	18937808	18937809	+	asmbl_40707	none	STRG.4063.3	1	STRG.4063.1,STRG.4063.2,STRG.4063.4	3
scaffold_22	spliced_intron	8241615	8241803	-	asmbl_30233	none	STRG.25164.2	1	STRG.25164.1,STRG.25164.3,blat.proc3829899.chain_2248	3
scaffold_20	retained_intron	631243	631334	-	asmbl_26438	none	blat.proc3829897.chain_3525	1	STRG.22751.3,blat.proc3829897.chain_3523	2
scaffold_4	alternate_exon	4095213	4096132	+	asmbl_42552	none	blat.proc3829873.chain_634	1	blat.proc3829873.chain_639	1
scaffold_21	starts_in_intron	3126244	3126244	-	asmbl_27542	none	STRG.23930.3,blat.proc3829899.chain_978	2	STRG.23930.4,STRG.23930.5,Trinity_GG_30335_c0_g1_i6,blat.proc3829899.chain_977,blat.proc3829899.chain_979,blat.proc3829899.chain_981	6
scaffold_3	retained_intron	18347334	18347419	-	asmbl_39561	none	blat.proc3829873.chain_417	1	STRG.4038.1,blat.proc3829889.chain_77	2
scaffold_11	retained_intron	5501775	5502119	-	asmbl_6642,asmbl_6643	none	STRG.13608.2,blat.proc3829893.chain_2062	2	STRG.13608.1,blat.proc3829893.chain_2060	2
scaffold_25	ends_in_intron	8667329	8667329	+	asmbl_33737	none	blat.proc3829885.chain_685	1	STRG.27672.1,STRG.27672.3,blat.proc3829885.chain_682,blat.proc3829885.chain_683,blat.proc3829885.chain_684	5
scaffold_24	alt_acceptor	6798944	6798945	-	asmbl_32969,asmbl_32973,asmbl_32974	none	STRG.26711.1,blat.proc3829901.chain_12,blat.proc3829901.chain_14,blat.proc3829901.chain_15	4	STRG.26711.2,STRG.26711.3	2
scaffold_26	ends_in_intron	2962554	2962554	-	asmbl_34739	none	STRG.27973.5	1	STRG.27973.1,STRG.27973.3,blat.proc3829901.chain_1232,blat.proc3829901.chain_1234,blat.proc3829901.chain_1235	5
scaffold_5	spliced_intron	6578599	6580344	-	asmbl_45484	none	STRG.6049.2,blat.proc3829889.chain_2147	2	STRG.6049.1,blat.proc3829889.chain_2145	2
scaffold_15	retained_intron	4493364	4493480	+	asmbl_14086,asmbl_14087	none	STRG.18165.2,blat.proc3829879.chain_2750	2	STRG.18165.1,blat.proc3829879.chain_2746,blat.proc3829879.chain_2747,blat.proc3829879.chain_2748,blat.proc3829879.chain_2749	5
scaffold_16	retained_intron	2172434	2173787	+	asmbl_16899,asmbl_16903,asmbl_16905	none	STRG.19105.2,Trinity_GG_10487_c0_g1_i8,blat.proc3829879.chain_3733,blat.proc3829879.chain_3735,blat.proc3829879.chain_3736	5	STRG.19105.1,blat.proc3829879.chain_3739	2
scaffold_3	ends_in_intron	15925976	15925976	-	asmbl_39410	none	blat.proc3829887.chain_3677	1	STRG.3872.1,STRG.3872.2,blat.proc3829887.chain_3678,blat.proc3829887.chain_3679	4
scaffold_3	alt_acceptor	8167061	8167062	-	asmbl_38967	none	blat.proc3829887.chain_3128	1	blat.proc3829887.chain_3134	1
scaffold_13	alt_donor	12002415	12002416	+	asmbl_11303	none	STRG.16324.1,blat.proc3829879.chain_1096	2	STRG.16324.2,blat.proc3829879.chain_1097	2
scaffold_5	spliced_intron	13022943	13023173	+	asmbl_44513	none	STRG.6522.3	1	STRG.6522.2,blat.proc3829873.chain_2617	2
scaffold_3	ends_in_intron	6077915	6077915	-	asmbl_38850	none	Trinity_GG_18797_c0_g1_i4,blat.proc3829887.chain_3024	2	STRG.3254.2,STRG.3254.3,blat.proc3829887.chain_3021,blat.proc3829887.chain_3023	4
scaffold_8	retained_exon	11560366	11560578	+	asmbl_52220	none	STRG.10343.1,Trinity_GG_5764_c0_g1_i2,blat.proc3829875.chain_2866,blat.proc3829875.chain_2867	4	STRG.10343.2	1
scaffold_22	retained_intron	214832	215205	+	asmbl_29114	none	STRG.24661.1,Trinity_GG_13639_c0_g1_i4,blat.proc3829883.chain_1718	3	STRG.24661.2,STRG.24661.3,STRG.24661.4,STRG.24661.5,blat.proc3829883.chain_1716,blat.proc3829883.chain_1717	6
scaffold_13	skipped_exon	15037437	15039366	-	asmbl_10187	none	STRG.16541.1,blat.proc3829895.chain_1255	2	STRG.16541.2,blat.proc3829895.chain_1254	2
scaffold_3	retained_intron	16038460	16038558	+	asmbl_40560	none	STRG.3883.2	1	STRG.3883.1,blat.proc3829873.chain_249,blat.proc3829873.chain_250	3
scaffold_1	retained_intron	18033265	18033608	-	asmbl_1077,asmbl_1078	none	Trinity_GG_17699_c0_g1_i2,Trinity_GG_17699_c0_g1_i5,blat.proc3829887.chain_1166,blat.proc3829887.chain_1167	4	STRG.1267.2,STRG.1267.3	2
scaffold_3	alt_acceptor	19814247	19814248	+	asmbl_40730,asmbl_40732,asmbl_40733,asmbl_40735	none	STRG.4094.2,blat.proc3829873.chain_433,blat.proc3829873.chain_435,blat.proc3829873.chain_436	4	STRG.4094.1,STRG.4094.3,blat.proc3829873.chain_434,blat.proc3829873.chain_437,blat.proc3829873.chain_438	5
scaffold_9	starts_in_intron	9870286	9870286	-	asmbl_55210,asmbl_55212	none	STRG.11345.3,blat.proc3829891.chain_3518	2	STRG.11345.1,Trinity_GG_23302_c0_g1_i1,Trinity_GG_23302_c0_g1_i4,blat.proc3829891.chain_3519,blat.proc3829891.chain_3522	5
scaffold_23	spliced_intron	4314274	4314425	+	asmbl_30800,asmbl_30801,asmbl_30805	none	STRG.25826.1,Trinity_GG_14254_c0_g1_i1,blat.proc3829883.chain_2712,blat.proc3829883.chain_2713,blat.proc3829883.chain_2716	5	Trinity_GG_14254_c0_g1_i7,blat.proc3829883.chain_2715	2
scaffold_11	alternate_exon	8102121	8102682	+	asmbl_5698	none	STRG.13811.4	1	Trinity_GG_7614_c1_g1_i5,blat.proc3829877.chain_2302	2
scaffold_23	alt_acceptor	4449754	4449755	-	asmbl_31587,asmbl_31588	none	STRG.25842.1,STRG.25842.3,Trinity_GG_31473_c0_g1_i1,Trinity_GG_31473_c0_g1_i4,blat.proc3829899.chain_2970,blat.proc3829899.chain_2971	6	STRG.25842.2	1
scaffold_10	alternate_exon	9336353	9337697	+	asmbl_4646	none	STRG.12653.1,Trinity_GG_6967_c0_g1_i1	2	STRG.12653.2	1
scaffold_24	alternate_exon	8740433	8740912	-	asmbl_33090,asmbl_33091	none	STRG.26873.2,blat.proc3829901.chain_169	2	STRG.26873.1,blat.proc3829901.chain_170,blat.proc3829901.chain_171,blat.proc3829901.chain_172	4
scaffold_23	alt_acceptor	330711	330712	-	asmbl_31302,asmbl_31303	none	STRG.25530.1,STRG.25530.3,blat.proc3829899.chain_2625,blat.proc3829899.chain_2626	4	STRG.25530.2	1
scaffold_9	retained_intron	11021992	11022126	-	asmbl_55230,asmbl_55231	none	STRG.11396.1,blat.proc3829891.chain_3554,blat.proc3829891.chain_3555	3	STRG.11396.2	1
scaffold_4	alt_acceptor	3883859	3883860	-	asmbl_41203	none	STRG.4295.3	1	STRG.4295.1,STRG.4295.2,STRG.4295.4,blat.proc3829889.chain_421,blat.proc3829889.chain_422	5
scaffold_15	starts_in_intron	15179203	15179203	+	asmbl_14677,asmbl_14682	none	blat.proc3829879.chain_3481,blat.proc3829879.chain_3482	2	STRG.18906.1,STRG.18906.2,STRG.18906.3,STRG.18906.4,blat.proc3829879.chain_3471,blat.proc3829879.chain_3472,blat.proc3829879.chain_3473,blat.proc3829879.chain_3474,blat.proc3829879.chain_3475,blat.proc3829879.chain_3476,blat.proc3829879.chain_3477,blat.proc3829879.chain_3478,blat.proc3829879.chain_3479,blat.proc3829879.chain_3480,blat.proc3829879.chain_3484,blat.proc3829879.chain_3485,blat.proc3829879.chain_3486,blat.proc3829879.chain_3487	18
scaffold_6	starts_in_intron	4181893	4181893	-	asmbl_48240	none	blat.proc3829889.chain_3403	1	STRG.7388.1,blat.proc3829889.chain_3402	2
scaffold_6	alt_donor	13060353	13060354	-	asmbl_48813	none	STRG.8056.4	1	STRG.8056.1,STRG.8056.2,blat.proc3829891.chain_351	3
scaffold_7	alt_acceptor	8073298	8073299	+	asmbl_50836,asmbl_50837,asmbl_50839	none	STRG.9038.1,STRG.9038.2,blat.proc3829875.chain_1461,blat.proc3829875.chain_1462,blat.proc3829875.chain_1463	5	STRG.9038.3	1
scaffold_6	spliced_intron	17798851	17799282	-	asmbl_49132	none	STRG.8455.1,blat.proc3829891.chain_712	2	blat.proc3829891.chain_713	1
scaffold_13	spliced_intron	4458561	4458799	+	asmbl_10774,asmbl_10775	none	STRG.15755.1,Trinity_GG_8663_c0_g1_i6,blat.proc3829879.chain_451,blat.proc3829879.chain_452	4	STRG.15755.2,blat.proc3829879.chain_450	2
scaffold_7	alt_donor	6878255	6878256	+	asmbl_50760	none	STRG.8936.1	1	STRG.8936.2	1
scaffold_6	starts_in_intron	12029548	12029548	-	asmbl_48713	none	blat.proc3829891.chain_237	1	STRG.7972.1,Trinity_GG_21536_c0_g1_i3,blat.proc3829891.chain_238,blat.proc3829891.chain_239	4
scaffold_2	retained_intron	3631902	3632007	+	asmbl_24313	none	STRG.1787.3	1	STRG.1787.1,STRG.1787.2,Trinity_GG_982_c0_g1_i6,blat.proc3829871.chain_1793	4
scaffold_20	ends_in_intron	11293212	11293212	+	asmbl_26185	none	blat.proc3829883.chain_766	1	STRG.23621.1,blat.proc3829883.chain_764	2
scaffold_17	starts_in_intron	7022719	7022719	+	asmbl_18017	none	blat.proc3829881.chain_1162	1	STRG.20355.1,STRG.20355.2,STRG.20355.3	3
scaffold_18	skipped_exon	8865903	8866225	-	asmbl_20061,asmbl_20066,asmbl_20067	none	STRG.21541.2,blat.proc3829897.chain_2358,blat.proc3829897.chain_2360,blat.proc3829897.chain_2362	4	STRG.21541.3,blat.proc3829897.chain_2356,blat.proc3829897.chain_2357,blat.proc3829897.chain_2359	4
scaffold_8	alt_donor	18070990	18070991	+	asmbl_52516	none	STRG.10696.2	1	STRG.10696.1,blat.proc3829875.chain_3187	2
scaffold_21	alt_donor	8003425	8003426	-	asmbl_27899	none	STRG.24325.2,blat.proc3829899.chain_1426	2	STRG.24325.1,blat.proc3829899.chain_1424	2
scaffold_17	alt_acceptor	7009179	7009180	-	asmbl_19060	none	STRG.20351.2	1	STRG.20351.1,blat.proc3829897.chain_1273,blat.proc3829897.chain_1274	3
scaffold_28	alt_acceptor	224104	224105	-	asmbl_37225	none	STRG.29227.3	1	STRG.29227.1,STRG.29227.2	2
scaffold_6	alt_acceptor	6026252	6026253	+	asmbl_46926,asmbl_46928	none	STRG.7547.1,STRG.7547.2,blat.proc3829873.chain_3639	3	STRG.7547.3	1
scaffold_18	alt_acceptor	1391556	1391557	-	asmbl_19655,asmbl_19656	none	blat.proc3829897.chain_1933,blat.proc3829897.chain_1935	2	STRG.21014.1,STRG.21014.2,blat.proc3829897.chain_1932,blat.proc3829897.chain_1937	4
scaffold_24	retained_exon	9954372	9954494	-	asmbl_33146,asmbl_33147,asmbl_33148,asmbl_33151,asmbl_33154	none	STRG.26947.1,STRG.26947.8,blat.proc3829901.chain_245,blat.proc3829901.chain_248,blat.proc3829901.chain_249,blat.proc3829901.chain_250	6	STRG.26947.3,STRG.26947.4	2
scaffold_10	skipped_exon	986771	987975	-	asmbl_2942	none	STRG.11980.3	1	STRG.11980.1,STRG.11980.2,blat.proc3829893.chain_423	3
scaffold_23	alternate_exon	10830585	10830617	+	asmbl_31165	none	STRG.26263.1,blat.proc3829883.chain_3117	2	STRG.26263.2	1
scaffold_5	alt_donor	18220737	18220738	+	asmbl_44878	none	STRG.6950.5	1	STRG.6950.1,STRG.6950.2,STRG.6950.3,STRG.6950.4,blat.proc3829873.chain_3088,blat.proc3829873.chain_3089	6
scaffold_1	alternate_exon	6829325	6830778	-	asmbl_396	none	STRG.478.3	1	blat.proc3829887.chain_366	1
scaffold_11	alternate_exon	15834191	15835484	+	asmbl_6120	none	STRG.14312.4	1	STRG.14312.1,STRG.14312.2,STRG.14312.3,blat.proc3829877.chain_2734,blat.proc3829877.chain_2735,blat.proc3829877.chain_2737	6
scaffold_26	retained_exon	8586775	8586871	-	asmbl_35006	none	STRG.28429.2,blat.proc3829901.chain_1500	2	STRG.28429.1,blat.proc3829901.chain_1498	2
scaffold_6	ends_in_intron	570859	570859	+	asmbl_46615	none	blat.proc3829873.chain_3203	1	STRG.7108.1,blat.proc3829873.chain_3204	2
scaffold_24	skipped_exon	9073530	9076142	+	asmbl_32494,asmbl_32495,asmbl_32499,asmbl_32501	none	STRG.26929.1,Trinity_GG_14897_c0_g1_i2,Trinity_GG_14897_c0_g1_i6,Trinity_GG_14897_c0_g1_i8,Trinity_GG_14897_c0_g1_i9,blat.proc3829885.chain_71,blat.proc3829885.chain_73,blat.proc3829885.chain_74,blat.proc3829885.chain_77	9	STRG.26929.2	1
scaffold_4	starts_in_intron	8990778	8990778	-	asmbl_41537	none	STRG.4717.5	1	STRG.4717.4	1
scaffold_24	alternate_exon	4454239	4455335	+	asmbl_32213	none	STRG.26585.2,blat.proc3829883.chain_3421	2	STRG.26585.1	1
scaffold_13	retained_intron	9896483	9896567	-	asmbl_10005	none	blat.proc3829895.chain_999	1	STRG.16220.1,blat.proc3829895.chain_1000	2
scaffold_4	retained_intron	6300842	6302966	+	asmbl_42723,asmbl_42724,asmbl_42725	none	blat.proc3829873.chain_865,blat.proc3829873.chain_867,blat.proc3829873.chain_871	3	STRG.4502.1,Trinity_GG_2497_c0_g1_i1,Trinity_GG_2497_c0_g1_i6,Trinity_GG_2497_c0_g1_i8,Trinity_GG_2497_c0_g1_i9,blat.proc3829873.chain_863,blat.proc3829873.chain_866,blat.proc3829873.chain_868,blat.proc3829873.chain_870	9
scaffold_7	spliced_intron	1235502	1235752	+	asmbl_50476,asmbl_50477,asmbl_50478,asmbl_50480	none	STRG.8627.3,STRG.8627.5,STRG.8627.7,STRG.8627.9	4	STRG.8627.6,Trinity_GG_4740_c0_g1_i13,Trinity_GG_4740_c0_g1_i14,blat.proc3829875.chain_1044,blat.proc3829875.chain_1045,blat.proc3829875.chain_1048	6
scaffold_28	alternate_exon	6064739	6065170	+	asmbl_38315	none	STRG.29708.1	1	STRG.29708.2	1
scaffold_10	ends_in_intron	3175695	3175695	-	asmbl_3091	none	Trinity_GG_23753_c0_g1_i2,blat.proc3829893.chain_553	2	STRG.12134.1,blat.proc3829893.chain_554	2
scaffold_6	retained_intron	16614134	16614236	+	asmbl_47650,asmbl_47653	none	STRG.8384.3,blat.proc3829875.chain_767	2	STRG.8384.1,STRG.8384.2,blat.proc3829875.chain_768	3
scaffold_9	starts_in_intron	5218107	5218107	+	asmbl_53985	none	STRG.11094.2,blat.proc3829875.chain_3505	2	STRG.11094.1	1
scaffold_17	alt_acceptor	10023592	10023593	+	asmbl_18282	none	STRG.20606.2	1	STRG.20606.1,STRG.20606.3	2
scaffold_13	ends_in_intron	2320801	2320801	+	asmbl_10572	none	blat.proc3829879.chain_167	1	STRG.15543.2,STRG.15543.3,STRG.15543.4,STRG.15543.5,STRG.15543.6,STRG.15543.7,STRG.15543.8,STRG.15543.9,Trinity_GG_8511_c1_g1_i5,blat.proc3829879.chain_168,blat.proc3829879.chain_170,blat.proc3829879.chain_173	12
scaffold_1	spliced_intron	18327108	18327318	+	asmbl_2535	none	STRG.1290.1,blat.proc3829871.chain_1326	2	blat.proc3829871.chain_1325	1
scaffold_20	retained_intron	5553307	5553473	-	asmbl_26688,asmbl_26692	none	STRG.23165.1,STRG.23165.3,blat.proc3829899.chain_203,blat.proc3829899.chain_206	4	STRG.23165.2,blat.proc3829899.chain_204,blat.proc3829899.chain_205	3
scaffold_19	alt_acceptor	8630	8631	+	asmbl_21971	none	STRG.21807.3	1	STRG.21807.1	1
scaffold_13	alternate_exon	11382290	11382362	-	asmbl_10042,asmbl_10045,asmbl_10050	none	STRG.16287.3,STRG.16287.5,Trinity_GG_26140_c0_g1_i1,Trinity_GG_26140_c0_g1_i3,blat.proc3829895.chain_1028,blat.proc3829895.chain_1033	6	STRG.16287.4,Trinity_GG_26140_c0_g1_i7,Trinity_GG_26140_c0_g1_i8,blat.proc3829895.chain_1030	4
scaffold_28	retained_intron	414159	414254	+	asmbl_37971	none	STRG.29239.1,Trinity_GG_16236_c0_g1_i2,blat.proc3829885.chain_2404	3	blat.proc3829885.chain_2403	1
scaffold_27	ends_in_intron	9137015	9137015	+	asmbl_36467	none	Trinity_GG_16176_c0_g1_i1,blat.proc3829885.chain_2304	2	STRG.29144.1,Trinity_GG_16176_c0_g1_i4,blat.proc3829885.chain_2306	3
scaffold_4	alternate_exon	16873885	16874556	-	asmbl_41979	none	STRG.5279.2	1	STRG.5279.3,STRG.5279.4	2
scaffold_10	alt_acceptor	7276366	7276367	+	asmbl_4554,asmbl_4555	none	STRG.12531.3,blat.proc3829877.chain_1101	2	STRG.12531.1,STRG.12531.2,blat.proc3829877.chain_1100,blat.proc3829877.chain_1103,blat.proc3829877.chain_1104,blat.proc3829877.chain_1105	6
scaffold_7	retained_exon	18393031	18393088	-	asmbl_50288,asmbl_50294,asmbl_50295,asmbl_50298	none	STRG.9659.1,STRG.9659.3,STRG.9659.5,Trinity_GG_22427_c0_g1_i10,blat.proc3829891.chain_1868,blat.proc3829891.chain_1870	6	STRG.9659.2,STRG.9659.4,blat.proc3829891.chain_1871,blat.proc3829891.chain_1873	4
scaffold_18	alternate_exon	3224291	3224418	-	asmbl_19792	none	STRG.21154.2,blat.proc3829897.chain_1964,blat.proc3829897.chain_1965	3	STRG.21154.1	1
scaffold_17	spliced_intron	5074760	5074970	+	asmbl_17938	none	STRG.20220.1,blat.proc3829881.chain_1030	2	Trinity_GG_11079_c0_g1_i2,blat.proc3829881.chain_1031	2
scaffold_22	ends_in_intron	7755269	7755269	+	asmbl_29508	none	blat.proc3829883.chain_2168	1	STRG.25100.1,blat.proc3829883.chain_2166	2
scaffold_24	retained_intron	8950507	8950872	-	asmbl_33116	none	Trinity_GG_32064_c0_g1_i3,blat.proc3829901.chain_209	2	STRG.26897.1,blat.proc3829901.chain_211	2
scaffold_12	spliced_intron	3326235	3326361	-	asmbl_7487	none	STRG.14541.1,blat.proc3829893.chain_2909	2	STRG.14541.2,blat.proc3829893.chain_2910	2
scaffold_27	starts_in_intron	1550827	1550827	+	asmbl_35984,asmbl_35987	none	STRG.28623.3,blat.proc3829885.chain_1672,blat.proc3829885.chain_1673	3	STRG.28623.1,STRG.28623.2,Trinity_GG_15852_c0_g1_i3,Trinity_GG_15852_c0_g1_i5,blat.proc3829885.chain_1669,blat.proc3829885.chain_1670	6
scaffold_13	retained_intron	16250502	16250639	+	asmbl_11542	none	Trinity_GG_9162_c0_g1_i3,Trinity_GG_9183_c0_g1_i2,blat.proc3829879.chain_1372,blat.proc3829879.chain_1402	4	STRG.16665.1,blat.proc3829879.chain_1371,blat.proc3829879.chain_1401,blat.proc3829879.chain_1403	4
scaffold_2	starts_in_intron	15768430	15768430	-	asmbl_23671	none	Trinity_GG_18402_c0_g1_i1	1	STRG.2524.1	1
scaffold_19	alt_acceptor	1612526	1612527	+	asmbl_22048,asmbl_22049	none	STRG.21903.1,Trinity_GG_12121_c0_g1_i2,blat.proc3829881.chain_2876,blat.proc3829881.chain_2877	4	STRG.21903.2,blat.proc3829881.chain_2878	2
scaffold_21	retained_exon	5519925	5520018	-	asmbl_27691	none	blat.proc3829899.chain_1154	1	STRG.24069.1,blat.proc3829899.chain_1157	2
scaffold_20	alternate_exon	239641	239845	-	asmbl_26405	none	STRG.22700.1	1	STRG.22700.2	1
scaffold_3	retained_exon	11978355	11978457	+	asmbl_40337	none	STRG.3621.2,Trinity_GG_2035_c0_g1_i1,blat.proc3829873.chain_20	3	STRG.3621.3	1
scaffold_22	alt_donor	10682802	10682803	-	asmbl_30386	none	STRG.25391.2	1	STRG.25391.1,STRG.25391.3	2
scaffold_11	ends_in_intron	7668386	7668386	-	asmbl_6774	none	blat.proc3829893.chain_2247	1	STRG.13764.1,STRG.13764.2,STRG.13764.3,Trinity_GG_24733_c1_g1_i1,blat.proc3829893.chain_2246	5
scaffold_26	retained_intron	9943076	9943771	-	asmbl_35075,asmbl_35076	none	STRG.28510.1,STRG.28510.2,Trinity_GG_32907_c0_g1_i1,Trinity_GG_32907_c1_g1_i1,blat.proc3829901.chain_1584,blat.proc3829901.chain_1585	6	STRG.28510.3	1
scaffold_9	retained_exon	5655560	5655667	+	asmbl_54046	none	STRG.11123.2	1	STRG.11123.1,blat.proc3829875.chain_3621	2
scaffold_18	alt_acceptor	9170423	9170424	+	asmbl_20904,asmbl_20906	none	STRG.21549.2,STRG.21549.3,Trinity_GG_11916_c0_g1_i2,blat.proc3829881.chain_2540	4	Trinity_GG_11916_c0_g1_i1,blat.proc3829881.chain_2538	2
scaffold_10	starts_in_intron	13047393	13047393	-	asmbl_3758,asmbl_3759	none	blat.proc3829893.chain_1402,blat.proc3829893.chain_1403	2	STRG.12902.1,STRG.12902.2	2
scaffold_27	alt_donor	9105634	9105635	+	asmbl_36458,asmbl_36460	none	blat.proc3829885.chain_2318,blat.proc3829885.chain_2320	2	blat.proc3829885.chain_2319	1
scaffold_1	retained_exon	3497332	3497448	-	asmbl_146,asmbl_147,asmbl_150,asmbl_151,asmbl_152,asmbl_153,asmbl_154,asmbl_155,asmbl_158	none	STRG.217.1,STRG.217.2,STRG.217.3,blat.proc3829887.chain_114,blat.proc3829887.chain_117,blat.proc3829887.chain_118,blat.proc3829887.chain_119,blat.proc3829887.chain_121,blat.proc3829887.chain_123,blat.proc3829887.chain_124	10	blat.proc3829887.chain_116,blat.proc3829887.chain_120,blat.proc3829887.chain_125	3
scaffold_28	starts_in_intron	40593	40593	-	asmbl_37204	none	blat.proc3829901.chain_2308	1	STRG.29215.1,blat.proc3829901.chain_2309	2
scaffold_9	spliced_intron	11794319	11794485	-	asmbl_55266,asmbl_55268,asmbl_55270,asmbl_55272	none	STRG.11484.1,STRG.11484.5,blat.proc3829891.chain_3590,blat.proc3829891.chain_3592,blat.proc3829891.chain_3594	5	STRG.11484.4,blat.proc3829891.chain_3593	2
scaffold_1	skipped_exon	3496862	3497688	-	asmbl_149,asmbl_156,asmbl_157	none	blat.proc3829887.chain_116,blat.proc3829887.chain_120,blat.proc3829887.chain_125	3	STRG.217.1,STRG.217.2,STRG.217.3,blat.proc3829887.chain_114,blat.proc3829887.chain_117,blat.proc3829887.chain_118,blat.proc3829887.chain_119,blat.proc3829887.chain_121,blat.proc3829887.chain_123,blat.proc3829887.chain_124	10
scaffold_1	spliced_intron	14320893	14321243	+	asmbl_2357	none	STRG.1024.3,blat.proc3829871.chain_1126	2	STRG.1024.2,blat.proc3829871.chain_1127,blat.proc3829871.chain_1128	3
scaffold_20	starts_in_intron	10114786	10114786	-	asmbl_27007	none	blat.proc3829899.chain_567	1	STRG.23549.1,STRG.23549.2,STRG.23549.3,blat.proc3829899.chain_564,blat.proc3829899.chain_565	5
scaffold_16	alternate_exon	7115654	7115689	-	asmbl_16341	none	blat.proc3829897.chain_400	1	STRG.19378.2	1
scaffold_24	alt_donor	10479687	10479688	+	asmbl_32569,asmbl_32570	none	STRG.26999.1,STRG.26999.2	2	blat.proc3829885.chain_114	1
scaffold_10	alt_donor	6615815	6615816	+	asmbl_4521	none	blat.proc3829877.chain_1083	1	STRG.12473.1	1
scaffold_6	alt_acceptor	13277367	13277368	+	asmbl_47453	none	Trinity_GG_4436_c0_g1_i6,blat.proc3829875.chain_491	2	STRG.8085.3,blat.proc3829875.chain_489,blat.proc3829875.chain_490	3
scaffold_14	spliced_intron	11686951	11687213	-	asmbl_13507,asmbl_13508,asmbl_13510	none	STRG.17500.1,STRG.17500.2,blat.proc3829895.chain_2222,blat.proc3829895.chain_2223,blat.proc3829895.chain_2224,blat.proc3829895.chain_2225	6	blat.proc3829895.chain_2221	1
scaffold_17	starts_in_intron	4697580	4697580	+	asmbl_17917	none	Trinity_GG_11033_c0_g1_i3,blat.proc3829881.chain_958	2	STRG.20195.1,STRG.20195.2,blat.proc3829881.chain_957	3
scaffold_2	retained_intron	15271745	15272034	+	asmbl_25038	none	blat.proc3829871.chain_2525	1	STRG.2481.1,blat.proc3829871.chain_2524,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2528,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2535,blat.proc3829871.chain_2536,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	12
scaffold_21	alt_donor	1300281	1300282	-	asmbl_27431	none	STRG.23801.3,Trinity_GG_30279_c0_g1_i2,blat.proc3829899.chain_875	3	STRG.23801.1,Trinity_GG_30279_c0_g1_i1,blat.proc3829899.chain_876	3
scaffold_4	starts_in_intron	8744635	8744635	+	asmbl_42909	none	blat.proc3829873.chain_1034	1	STRG.4689.1	1
scaffold_7	retained_exon	13575816	13575933	+	asmbl_51245	none	STRG.9451.1,Trinity_GG_5241_c0_g1_i1,blat.proc3829875.chain_1896	3	STRG.9451.2,Trinity_GG_5241_c0_g1_i2,blat.proc3829875.chain_1895	3
scaffold_2	alt_donor	9296966	9296967	+	asmbl_24715	none	STRG.2177.2,Trinity_GG_1195_c0_g1_i1,blat.proc3829871.chain_2229	3	STRG.2177.1,Trinity_GG_1195_c0_g1_i2,blat.proc3829871.chain_2230	3
scaffold_6	alt_acceptor	3287462	3287463	-	asmbl_48182	none	STRG.7327.3	1	STRG.7327.1	1
scaffold_1	spliced_intron	16095601	16095749	-	asmbl_977	none	STRG.1128.1,blat.proc3829887.chain_1026	2	STRG.1128.2,blat.proc3829887.chain_1023	2
scaffold_1	alternate_exon	18742037	18742061	-	asmbl_1122	none	STRG.1303.1	1	STRG.1303.2	1
scaffold_21	alt_acceptor	1171944	1171945	-	asmbl_27409	none	STRG.23783.1,blat.proc3829899.chain_848	2	STRG.23783.2	1
scaffold_5	alt_donor	7320452	7320453	+	asmbl_44152,asmbl_44154	none	STRG.6121.1,blat.proc3829873.chain_2277	2	STRG.6121.2	1
scaffold_2	alternate_exon	8055627	8055818	-	asmbl_23327,asmbl_23328	none	STRG.2095.2,blat.proc3829887.chain_2005,blat.proc3829887.chain_2009	3	STRG.2095.3,Trinity_GG_18188_c1_g1_i1	2
scaffold_14	starts_in_intron	4117097	4117097	+	asmbl_11951	none	STRG.16951.6,blat.proc3829879.chain_1687	2	STRG.16951.1,STRG.16951.2,STRG.16951.3,STRG.16951.4,STRG.16951.5,Trinity_GG_9333_c0_g1_i1,Trinity_GG_9333_c0_g1_i3,Trinity_GG_9333_c0_g1_i4,Trinity_GG_9333_c0_g1_i5,Trinity_GG_9333_c0_g1_i7,blat.proc3829879.chain_1686,blat.proc3829879.chain_1688,blat.proc3829879.chain_1689,blat.proc3829879.chain_1690,blat.proc3829879.chain_1691	15
scaffold_8	retained_intron	7484208	7484297	-	asmbl_52906	none	Trinity_GG_22590_c0_g1_i4,blat.proc3829891.chain_2154	2	STRG.10067.1,blat.proc3829891.chain_2151	2
scaffold_10	alt_acceptor	2721454	2721455	+	asmbl_4277	none	STRG.12081.4,Trinity_GG_6735_c0_g1_i3,blat.proc3829877.chain_813	3	STRG.12081.1,STRG.12081.2,STRG.12081.3,Trinity_GG_6735_c0_g1_i4,blat.proc3829877.chain_814,blat.proc3829877.chain_816	6
scaffold_27	spliced_intron	9968387	9968472	+	asmbl_36507	none	STRG.29210.2,blat.proc3829885.chain_2348	2	STRG.29210.1,STRG.29210.3,blat.proc3829885.chain_2349	3
scaffold_9	starts_in_intron	9413930	9413930	-	asmbl_55137	none	blat.proc3829891.chain_3485	1	STRG.11291.1,blat.proc3829891.chain_3484,blat.proc3829891.chain_3486	3
scaffold_4	skipped_exon	7150900	7152429	+	asmbl_42804	none	STRG.4558.2	1	STRG.4558.1,STRG.4558.3,STRG.4558.4,STRG.4558.5,blat.proc3829873.chain_883,blat.proc3829873.chain_884	6
scaffold_3	alt_donor	7711248	7711249	-	asmbl_38927,asmbl_38928,asmbl_38929,asmbl_38930,asmbl_38931,asmbl_38932,asmbl_38934	none	STRG.3361.1,STRG.3361.2,blat.proc3829887.chain_3171,blat.proc3829887.chain_3172,blat.proc3829887.chain_3173,blat.proc3829887.chain_3174,blat.proc3829887.chain_3176,blat.proc3829887.chain_3177	8	blat.proc3829887.chain_3175	1
scaffold_2	alt_acceptor	8059384	8059385	-	asmbl_23330	none	STRG.2094.2,blat.proc3829887.chain_1997	2	STRG.2094.3	1
scaffold_4	spliced_intron	19591639	19591710	-	asmbl_42210	none	blat.proc3829889.chain_1637	1	STRG.5545.1	1
scaffold_19	starts_in_intron	9186464	9186464	+	asmbl_22378	none	Trinity_GG_12350_c0_g1_i1,blat.proc3829881.chain_3270	2	STRG.22346.1	1
scaffold_15	spliced_intron	15857347	15857505	+	asmbl_14774,asmbl_14775	none	STRG.18964.1,STRG.18964.4	2	Trinity_GG_10383_c0_g1_i2,blat.proc3829879.chain_3541,blat.proc3829879.chain_3545	3
scaffold_14	starts_in_intron	8233373	8233373	-	asmbl_13246	none	blat.proc3829895.chain_1920	1	STRG.17225.2,blat.proc3829895.chain_1919,blat.proc3829895.chain_1921	3
scaffold_2	alt_acceptor	7241553	7241554	+	asmbl_24584,asmbl_24585,asmbl_24589,asmbl_24590	none	STRG.2061.1,blat.proc3829871.chain_2164,blat.proc3829871.chain_2169,blat.proc3829871.chain_2170,blat.proc3829871.chain_2171	5	blat.proc3829871.chain_2172	1
scaffold_28	spliced_intron	4267785	4268006	+	asmbl_38227	none	STRG.29594.1,Trinity_GG_16413_c0_g1_i1,blat.proc3829885.chain_2713	3	STRG.29594.2,blat.proc3829885.chain_2712	2
scaffold_7	skipped_exon	8171087	8173613	+	asmbl_50844	none	STRG.9039.1,blat.proc3829875.chain_1470	2	STRG.9039.2,blat.proc3829875.chain_1471	2
scaffold_12	spliced_intron	14100592	14100679	-	asmbl_8105	none	STRG.15222.2,blat.proc3829893.chain_3671	2	Trinity_GG_25544_c0_g1_i1,blat.proc3829893.chain_3672	2
scaffold_19	spliced_intron	5461618	5461705	+	asmbl_22179	none	blat.proc3829881.chain_3055	1	Trinity_GG_12224_c0_g3_i2,blat.proc3829881.chain_3061	2
scaffold_4	alternate_exon	16481102	16481290	-	asmbl_41931	none	Trinity_GG_19942_c0_g2_i1,blat.proc3829889.chain_1291	2	STRG.5226.3,blat.proc3829889.chain_1292	2
scaffold_25	alt_acceptor	8706426	8706427	+	asmbl_33746	none	STRG.27679.2,blat.proc3829885.chain_694,blat.proc3829885.chain_699	3	STRG.27679.1,Trinity_GG_15273_c0_g1_i6,blat.proc3829885.chain_700,blat.proc3829885.chain_701	4
scaffold_7	alt_donor	2311986	2311987	+	asmbl_50510,asmbl_50512	none	STRG.8659.1,STRG.8659.2,Trinity_GG_4762_c0_g1_i2,blat.proc3829875.chain_1092	4	STRG.8659.3	1
scaffold_19	ends_in_intron	10790084	10790084	+	asmbl_22461	none	blat.proc3829881.chain_3370	1	STRG.22407.1,STRG.22407.2,blat.proc3829881.chain_3369	3
scaffold_14	alt_donor	10693026	10693027	+	asmbl_12322	none	blat.proc3829879.chain_2114	1	STRG.17404.2,STRG.17404.3,Trinity_GG_9574_c0_g1_i1	3
scaffold_22	retained_intron	322655	323132	+	asmbl_29134,asmbl_29138	none	STRG.24670.2,blat.proc3829883.chain_1730	2	STRG.24670.3,blat.proc3829883.chain_1729	2
scaffold_85	alt_acceptor	3720	3721	-	asmbl_53690	none	STRG.30107.2	1	STRG.30107.1,blat.proc3829901.chain_3204,blat.proc3829901.chain_3205	3
scaffold_4	alt_donor	5228661	5228662	-	asmbl_41311	none	STRG.4417.4,blat.proc3829889.chain_438	2	STRG.4417.1,STRG.4417.3,blat.proc3829889.chain_436,blat.proc3829889.chain_439	4
scaffold_28	spliced_intron	7721599	7722019	+	asmbl_38397,asmbl_38398,asmbl_38400,asmbl_38402	none	STRG.29824.1,Trinity_GG_16523_c1_g1_i1,Trinity_GG_16523_c1_g1_i2,blat.proc3829885.chain_2922,blat.proc3829885.chain_2923,blat.proc3829885.chain_2926,blat.proc3829885.chain_2928	7	Trinity_GG_16523_c1_g2_i1	1
scaffold_10	retained_intron	6672054	6672407	-	asmbl_3404,asmbl_3405	none	blat.proc3829893.chain_1029,blat.proc3829893.chain_1032	2	STRG.12494.6,blat.proc3829893.chain_1027	2
scaffold_18	spliced_intron	3213856	3213934	+	asmbl_20476	none	STRG.21149.1,blat.proc3829881.chain_2031	2	Trinity_GG_11644_c0_g1_i1,blat.proc3829881.chain_2032	2
scaffold_19	ends_in_intron	10069606	10069606	+	asmbl_22420	none	STRG.22381.3	1	STRG.22381.1,blat.proc3829881.chain_3297,blat.proc3829881.chain_3298,blat.proc3829881.chain_3299	4
scaffold_16	spliced_intron	11664164	11664277	+	asmbl_17398,asmbl_17399	none	STRG.19673.1,blat.proc3829881.chain_560,blat.proc3829881.chain_561	3	STRG.19673.2	1
scaffold_13	alternate_exon	1531673	1531722	-	asmbl_9379	none	Trinity_GG_25702_c0_g1_i2,blat.proc3829895.chain_261	2	STRG.15500.1,STRG.15500.2,STRG.15500.3,Trinity_GG_25702_c0_g1_i5,blat.proc3829895.chain_260	5
scaffold_28	retained_intron	5014513	5014595	+	asmbl_38254,asmbl_38257	none	Trinity_GG_16433_c0_g2_i1,blat.proc3829885.chain_2754,blat.proc3829885.chain_2756	3	STRG.29628.1,STRG.29628.2,Trinity_GG_16433_c0_g1_i1,Trinity_GG_16433_c0_g2_i3,blat.proc3829885.chain_2751,blat.proc3829885.chain_2752,blat.proc3829885.chain_2753,blat.proc3829885.chain_2757	8
scaffold_2	alt_donor	14021578	14021579	+	asmbl_24901,asmbl_24905	none	STRG.2396.2,STRG.2396.3,Trinity_GG_1338_c0_g1_i4,blat.proc3829871.chain_2492	4	STRG.2396.1,Trinity_GG_1338_c0_g1_i2,blat.proc3829871.chain_2493,blat.proc3829871.chain_2494	4
scaffold_9	alternate_exon	61233	61372	-	asmbl_54768	none	STRG.10754.4,Trinity_GG_23008_c0_g2_i2,blat.proc3829891.chain_2965	3	blat.proc3829891.chain_2964	1
scaffold_17	retained_exon	1302874	1302916	-	asmbl_18737,asmbl_18739,asmbl_18740	none	STRG.19954.1,blat.proc3829897.chain_927,blat.proc3829897.chain_930,blat.proc3829897.chain_931	4	blat.proc3829897.chain_932	1
scaffold_15	alt_acceptor	4231386	4231387	+	asmbl_14070,asmbl_14073,asmbl_14075,asmbl_14076	none	STRG.18160.1,blat.proc3829879.chain_2809,blat.proc3829879.chain_2810,blat.proc3829879.chain_2813,blat.proc3829879.chain_2814	5	Trinity_GG_9974_c0_g1_i8,blat.proc3829879.chain_2807	2
scaffold_18	alternate_exon	1512505	1512941	+	asmbl_20384	none	STRG.21033.3	1	STRG.21033.4	1
scaffold_25	spliced_intron	6253400	6253539	+	asmbl_33602,asmbl_33604	none	STRG.27492.1,blat.proc3829885.chain_517,blat.proc3829885.chain_518,blat.proc3829885.chain_520	4	Trinity_GG_15150_c0_g1_i3,blat.proc3829885.chain_519,blat.proc3829885.chain_521	3
scaffold_21	spliced_intron	2470395	2470715	-	asmbl_27482,asmbl_27485	none	STRG.23863.2,STRG.23863.4,blat.proc3829899.chain_898,blat.proc3829899.chain_901,blat.proc3829899.chain_906	5	STRG.23863.1,blat.proc3829899.chain_899,blat.proc3829899.chain_902,blat.proc3829899.chain_904,blat.proc3829899.chain_905	5
scaffold_12	spliced_intron	6544970	6545003	+	asmbl_8661	none	STRG.14744.2	1	STRG.14744.1,Trinity_GG_8141_c0_g1_i1,Trinity_GG_8141_c0_g1_i2,blat.proc3829877.chain_3228,blat.proc3829877.chain_3229	5
scaffold_19	alternate_exon	6832142	6832168	-	asmbl_21439	none	STRG.22186.1	1	STRG.22186.2	1
scaffold_6	alt_donor	12552116	12552117	-	asmbl_48759,asmbl_48762	none	STRG.8010.2,blat.proc3829891.chain_322	2	STRG.8010.3,blat.proc3829891.chain_318	2
scaffold_12	alt_donor	4613489	4613490	-	asmbl_7547,asmbl_7552,asmbl_7554	none	STRG.14626.2,STRG.14626.4,blat.proc3829893.chain_2996,blat.proc3829893.chain_2998	4	STRG.14626.1,blat.proc3829893.chain_2997,blat.proc3829893.chain_2999,blat.proc3829893.chain_3001	4
scaffold_13	retained_intron	8831597	8831757	-	asmbl_9951	none	Trinity_GG_26045_c0_g1_i2,blat.proc3829895.chain_859	2	STRG.16144.1,blat.proc3829895.chain_860	2
scaffold_5	alt_donor	9579659	9579660	-	asmbl_45672	none	blat.proc3829889.chain_2352	1	STRG.6266.1	1
scaffold_6	retained_intron	2479060	2479128	-	asmbl_48076	none	Trinity_GG_21054_c0_g2_i1,blat.proc3829889.chain_3222	2	STRG.7236.2	1
scaffold_1	alt_donor	11801244	11801245	-	asmbl_679	none	STRG.794.1	1	STRG.794.3,Trinity_GG_17439_c0_g1_i4,blat.proc3829887.chain_689	3
scaffold_23	alt_donor	6923527	6923528	-	asmbl_31715	none	STRG.25999.1,blat.proc3829899.chain_3051	2	STRG.25999.2,blat.proc3829899.chain_3050	2
scaffold_23	alt_donor	7979594	7979595	-	asmbl_31785	none	STRG.26086.2	1	STRG.26086.1,blat.proc3829899.chain_3185	2
scaffold_14	retained_exon	7295149	7295226	+	asmbl_12124,asmbl_12127	none	STRG.17153.1,blat.proc3829879.chain_1852,blat.proc3829879.chain_1855	3	STRG.17153.2,blat.proc3829879.chain_1853	2
scaffold_16	alt_donor	15174488	15174489	+	asmbl_17518	none	STRG.19865.1,Trinity_GG_10881_c0_g1_i2,blat.proc3829881.chain_709	3	STRG.19865.2,Trinity_GG_10881_c0_g1_i1,blat.proc3829881.chain_710	3
scaffold_20	starts_in_intron	11592978	11592978	-	asmbl_27087	none	Trinity_GG_30197_c0_g2_i1,blat.proc3829899.chain_705	2	STRG.23657.1,STRG.23657.2,STRG.23657.3	3
scaffold_10	spliced_intron	379136	379266	-	asmbl_2863,asmbl_2864,asmbl_2865,asmbl_2867	none	STRG.11913.1,STRG.11913.2,STRG.11913.3,STRG.11913.4,Trinity_GG_23607_c0_g1_i1,blat.proc3829893.chain_302,blat.proc3829893.chain_306	7	STRG.11913.5,Trinity_GG_23607_c0_g1_i5,blat.proc3829893.chain_304	3
scaffold_4	alt_acceptor	18117247	18117248	-	asmbl_42099	none	STRG.5417.1	1	STRG.5417.2	1
scaffold_10	alternate_exon	1165285	1165363	+	asmbl_4194	none	STRG.11995.3,blat.proc3829877.chain_705	2	STRG.11995.1,STRG.11995.2,blat.proc3829877.chain_704,blat.proc3829877.chain_706	4
scaffold_6	alt_acceptor	4600508	4600509	+	asmbl_46834	none	STRG.7441.1,blat.proc3829873.chain_3471	2	STRG.7441.2	1
scaffold_4	spliced_intron	5650431	5650953	-	asmbl_41352,asmbl_41354,asmbl_41355,asmbl_41357,asmbl_41364,asmbl_41365,asmbl_41368,asmbl_41369	none	STRG.4469.1,STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_606,blat.proc3829889.chain_607,blat.proc3829889.chain_608,blat.proc3829889.chain_612	8	blat.proc3829889.chain_603,blat.proc3829889.chain_611	2
scaffold_15	alt_donor	1963690	1963691	+	asmbl_13980	none	STRG.17971.3,blat.proc3829879.chain_2658	2	blat.proc3829879.chain_2659	1
scaffold_6	spliced_intron	12116976	12117069	+	asmbl_47309	none	STRG.7978.3,Trinity_GG_4362_c0_g1_i5,blat.proc3829875.chain_359	3	STRG.7978.4,Trinity_GG_4362_c0_g1_i2,blat.proc3829875.chain_360	3
scaffold_7	retained_intron	9782875	9783156	-	asmbl_49877,asmbl_49878,asmbl_49879	none	STRG.9164.1,STRG.9164.3,STRG.9164.4,blat.proc3829891.chain_1403	4	STRG.9164.2,blat.proc3829891.chain_1404	2
scaffold_28	starts_in_intron	5253665	5253665	-	asmbl_37602	none	blat.proc3829901.chain_2698	1	STRG.29655.1,blat.proc3829901.chain_2697	2
scaffold_9	ends_in_intron	9354552	9354552	-	asmbl_55125	none	STRG.11278.2,Trinity_GG_23215_c0_g1_i1,blat.proc3829891.chain_3329	3	STRG.11278.1,blat.proc3829891.chain_3328	2
scaffold_21	starts_in_intron	257306	257306	-	asmbl_27313,asmbl_27317,asmbl_27321,asmbl_27322	none	STRG.23718.1,STRG.23718.7,blat.proc3829899.chain_783,blat.proc3829899.chain_790,blat.proc3829899.chain_791,blat.proc3829899.chain_794	6	STRG.23718.2,STRG.23718.3,STRG.23718.4,STRG.23718.5,STRG.23718.6,STRG.23718.8,blat.proc3829899.chain_781,blat.proc3829899.chain_782,blat.proc3829899.chain_785,blat.proc3829899.chain_786,blat.proc3829899.chain_787,blat.proc3829899.chain_788	12
scaffold_18	retained_intron	7509091	7509220	-	asmbl_19984	none	Trinity_GG_28966_c0_g1_i2,blat.proc3829897.chain_2210	2	STRG.21437.1,Trinity_GG_28966_c0_g1_i1,Trinity_GG_28966_c0_g1_i3,blat.proc3829897.chain_2208,blat.proc3829897.chain_2209	5
scaffold_1210	alternate_exon	1061	1175	-	asmbl_9229	none	STRG.30539.1	1	STRG.30539.2	1
scaffold_19	ends_in_intron	12671569	12671569	+	asmbl_22625,asmbl_22627	none	blat.proc3829881.chain_3544,blat.proc3829881.chain_3546	2	STRG.22573.1,blat.proc3829881.chain_3545	2
scaffold_9	ends_in_intron	5019095	5019095	+	asmbl_53962	none	STRG.11062.1,Trinity_GG_6159_c0_g1_i1,blat.proc3829875.chain_3527	3	STRG.11062.2,Trinity_GG_6159_c0_g1_i2,Trinity_GG_6159_c0_g1_i3,blat.proc3829875.chain_3528,blat.proc3829875.chain_3529	5
scaffold_7	retained_intron	8326608	8326876	-	asmbl_49820	none	Trinity_GG_22126_c0_g1_i8,blat.proc3829891.chain_1317	2	STRG.9060.1,blat.proc3829891.chain_1315	2
scaffold_4	ends_in_intron	12380820	12380820	-	asmbl_41654	none	Trinity_GG_19731_c0_g1_i2,blat.proc3829889.chain_939	2	STRG.4873.1,STRG.4873.2,blat.proc3829889.chain_938	3
scaffold_7	alt_acceptor	4933373	4933374	+	asmbl_50651,asmbl_50652,asmbl_50654,asmbl_50656,asmbl_50660,asmbl_50661,asmbl_50662,asmbl_50663	none	STRG.8834.1,STRG.8834.2,blat.proc3829875.chain_1275,blat.proc3829875.chain_1276,blat.proc3829875.chain_1278,blat.proc3829875.chain_1279,blat.proc3829875.chain_1281,blat.proc3829875.chain_1282,blat.proc3829875.chain_1283	9	blat.proc3829875.chain_1280	1
scaffold_4	alt_acceptor	10873340	10873341	-	asmbl_41604,asmbl_41606,asmbl_41607	none	STRG.4807.1,blat.proc3829889.chain_806,blat.proc3829889.chain_808,blat.proc3829889.chain_809	4	blat.proc3829889.chain_807	1
scaffold_5	retained_intron	10536961	10538269	-	asmbl_45747,asmbl_45748,asmbl_45749	none	STRG.6329.1,STRG.6329.4,blat.proc3829889.chain_2424,blat.proc3829889.chain_2425,blat.proc3829889.chain_2428	5	STRG.6329.3,Trinity_GG_20579_c0_g1_i4,Trinity_GG_20579_c0_g1_i7,blat.proc3829889.chain_2427	4
scaffold_12	retained_intron	6943372	6943864	-	asmbl_7679,asmbl_7680	none	STRG.14749.1,Trinity_GG_25238_c0_g1_i1,Trinity_GG_25240_c0_g1_i2,blat.proc3829893.chain_3140,blat.proc3829893.chain_3142,blat.proc3829893.chain_3143	6	blat.proc3829893.chain_3139	1
scaffold_3	alt_donor	18321166	18321167	-	asmbl_39555	none	STRG.4032.1	1	STRG.4032.2	1
scaffold_9	starts_in_intron	7798566	7798566	+	asmbl_54127	none	Trinity_GG_6253_c0_g1_i2,blat.proc3829875.chain_3715	2	blat.proc3829875.chain_3706,blat.proc3829875.chain_3708,blat.proc3829875.chain_3709,blat.proc3829875.chain_3711,blat.proc3829875.chain_3713,blat.proc3829875.chain_3714	6
scaffold_6	spliced_intron	8643223	8643316	+	asmbl_47104,asmbl_47107	none	STRG.7737.3,blat.proc3829875.chain_103	2	blat.proc3829875.chain_104	1
scaffold_15	alternate_exon	6961830	6962255	+	asmbl_14213	none	STRG.18295.2	1	blat.proc3829879.chain_2930,blat.proc3829879.chain_2933	2
scaffold_28	ends_in_intron	58461	58461	-	asmbl_37209	none	Trinity_GG_33360_c0_g1_i3,blat.proc3829901.chain_2316	2	STRG.29222.1,Trinity_GG_33360_c0_g1_i2,blat.proc3829901.chain_2317,blat.proc3829901.chain_2318,blat.proc3829901.chain_2319	5
scaffold_5	retained_intron	5738215	5738534	+	asmbl_44028,asmbl_44030	none	STRG.5984.1,STRG.5984.2,blat.proc3829873.chain_2047	3	STRG.5984.4	1
scaffold_10	spliced_intron	8346979	8347182	+	asmbl_4595	none	STRG.12594.2	1	STRG.12594.1,blat.proc3829877.chain_1179	2
scaffold_23	spliced_intron	10938169	10938227	-	asmbl_31890	none	blat.proc3829899.chain_3332,blat.proc3829899.chain_3333	2	Trinity_GG_31688_c0_g1_i4	1
scaffold_3	spliced_intron	8163660	8164221	-	asmbl_38963	none	Trinity_GG_18833_c2_g2_i5,blat.proc3829887.chain_3141	2	Trinity_GG_18833_c2_g1_i1,blat.proc3829887.chain_3138	2
scaffold_10	retained_intron	13919739	13919961	+	asmbl_4905	none	STRG.12965.2	1	STRG.12965.1,blat.proc3829877.chain_1531	2
scaffold_2	starts_in_intron	9863846	9863846	-	asmbl_23410,asmbl_23411	none	STRG.2190.2,STRG.2190.3	2	STRG.2190.1,blat.proc3829887.chain_2112	2
scaffold_5	retained_intron	11630266	11630481	-	asmbl_45801,asmbl_45803	none	blat.proc3829889.chain_2526,blat.proc3829889.chain_2528	2	blat.proc3829889.chain_2529	1
scaffold_28	spliced_intron	2109125	2109263	+	asmbl_38017	none	STRG.29353.1	1	blat.proc3829885.chain_2493	1
scaffold_25	retained_intron	6525745	6525968	-	asmbl_34338	none	STRG.27518.1	1	blat.proc3829901.chain_848	1
scaffold_16	retained_intron	1237437	1237543	-	asmbl_16103	none	blat.proc3829897.chain_128	1	STRG.19075.1,blat.proc3829897.chain_126,blat.proc3829897.chain_127	3
scaffold_2	alt_donor	1594909	1594910	+	asmbl_24232,asmbl_24233,asmbl_24235,asmbl_24237,asmbl_24238	none	STRG.1628.1,STRG.1628.3,STRG.1628.4,Trinity_GG_905_c0_g1_i6,blat.proc3829871.chain_1665,blat.proc3829871.chain_1668,blat.proc3829871.chain_1669	7	STRG.1628.2	1
scaffold_8	retained_intron	11278487	11279101	-	asmbl_53141,asmbl_53144,asmbl_53145	none	STRG.10339.1,STRG.10339.2,blat.proc3829891.chain_2438	3	STRG.10339.3,STRG.10339.4,blat.proc3829891.chain_2439,blat.proc3829891.chain_2440	4
scaffold_8	retained_exon	9866267	9866359	+	asmbl_52101	none	STRG.10225.2	1	blat.proc3829875.chain_2692,blat.proc3829875.chain_2697	2
scaffold_8	alt_donor	9656080	9656081	+	asmbl_52078,asmbl_52080	none	STRG.10210.1,blat.proc3829875.chain_2729	2	STRG.10210.2,STRG.10210.3,blat.proc3829875.chain_2728,blat.proc3829875.chain_2730	4
scaffold_9	starts_in_intron	13300954	13300954	-	asmbl_55384	none	blat.proc3829891.chain_3720	1	STRG.11625.1,STRG.11625.2,STRG.11625.3,STRG.11625.4,STRG.11625.5,STRG.11625.6,STRG.11625.7	7
scaffold_14	spliced_intron	11574210	11574361	-	asmbl_13480,asmbl_13481,asmbl_13482,asmbl_13486,asmbl_13487	none	STRG.17490.1,STRG.17490.2,STRG.17490.3,STRG.17490.4,STRG.17490.5,blat.proc3829895.chain_2172,blat.proc3829895.chain_2173,blat.proc3829895.chain_2179	8	blat.proc3829895.chain_2180	1
scaffold_8	retained_intron	12027883	12028191	+	asmbl_52294	none	Trinity_GG_5804_c0_g1_i2,blat.proc3829875.chain_2932	2	STRG.10394.1,STRG.10394.2,Trinity_GG_5804_c0_g1_i3,blat.proc3829875.chain_2930,blat.proc3829875.chain_2931	5
scaffold_6	retained_intron	16272558	16272579	-	asmbl_49042	none	STRG.8343.1,Trinity_GG_21767_c0_g1_i1	2	STRG.8343.2	1
scaffold_11	ends_in_intron	16470912	16470912	-	asmbl_7199	none	Trinity_GG_25017_c0_g1_i3,blat.proc3829893.chain_2747	2	STRG.14328.4,blat.proc3829893.chain_2746	2
scaffold_11	starts_in_intron	11070186	11070186	-	asmbl_6995	none	blat.proc3829893.chain_2448	1	STRG.14060.1,blat.proc3829893.chain_2449	2
scaffold_7	ends_in_intron	4514786	4514786	+	asmbl_50615	none	blat.proc3829875.chain_1225,blat.proc3829875.chain_1226	2	STRG.8814.1,STRG.8814.3,blat.proc3829875.chain_1228,blat.proc3829875.chain_1229	4
scaffold_11	retained_intron	4745326	4745491	-	asmbl_6600	none	blat.proc3829893.chain_2037	1	STRG.13555.1,STRG.13555.2,blat.proc3829893.chain_2035,blat.proc3829893.chain_2036,blat.proc3829893.chain_2038,blat.proc3829893.chain_2039,blat.proc3829893.chain_2040	7
scaffold_16	spliced_intron	11607412	11607538	+	asmbl_17394	none	STRG.19668.2	1	STRG.19668.1,blat.proc3829881.chain_557	2
scaffold_28	alt_acceptor	1576302	1576303	+	asmbl_38004	none	STRG.29324.1,blat.proc3829885.chain_2450	2	STRG.29324.2	1
scaffold_12	spliced_intron	15012722	15012846	-	asmbl_8165,asmbl_8167	none	STRG.15285.2,blat.proc3829893.chain_3727,blat.proc3829893.chain_3730	3	STRG.15285.1,blat.proc3829893.chain_3728,blat.proc3829893.chain_3729,blat.proc3829893.chain_3731	4
scaffold_15	alternate_exon	145339	145602	-	asmbl_14923	none	blat.proc3829895.chain_2600	1	STRG.17865.5	1
scaffold_14	retained_exon	868708	868738	+	asmbl_11747	none	Trinity_GG_9198_c0_g1_i4,blat.proc3829879.chain_1428	2	STRG.16747.1,STRG.16747.2,STRG.16747.3,blat.proc3829879.chain_1427	4
scaffold_28	alt_acceptor	1648053	1648054	-	asmbl_37321	none	STRG.29335.1,blat.proc3829901.chain_2439	2	STRG.29335.2	1
scaffold_6	ends_in_intron	3042370	3042370	-	asmbl_48168	none	Trinity_GG_21114_c0_g1_i1,blat.proc3829889.chain_3317	2	STRG.7302.1,STRG.7302.2,STRG.7302.3,blat.proc3829889.chain_3316,blat.proc3829889.chain_3318,blat.proc3829889.chain_3319	6
scaffold_4	ends_in_intron	12342068	12342068	-	asmbl_41643	none	Trinity_GG_19730_c0_g1_i2,blat.proc3829889.chain_935	2	STRG.4867.1,STRG.4867.2,blat.proc3829889.chain_933,blat.proc3829889.chain_934	4
scaffold_2	spliced_intron	3079174	3079230	+	asmbl_24295	none	STRG.1752.1	1	Trinity_GG_996_c0_g1_i1,blat.proc3829871.chain_1823	2
scaffold_19	ends_in_intron	10303810	10303810	+	asmbl_22451	none	blat.proc3829881.chain_3353	1	STRG.22402.1,STRG.22402.2,STRG.22402.4,Trinity_GG_12396_c0_g1_i3,blat.proc3829881.chain_3351,blat.proc3829881.chain_3352	6
scaffold_23	alt_acceptor	7712239	7712240	+	asmbl_31024,asmbl_31025	none	STRG.26065.1,blat.proc3829883.chain_2954,blat.proc3829883.chain_2955	3	STRG.26065.2	1
scaffold_13	retained_intron	9223165	9223239	+	asmbl_11160	none	STRG.16166.1,blat.proc3829879.chain_872	2	STRG.16166.2	1
scaffold_3	spliced_intron	18346561	18346729	-	asmbl_39560	none	STRG.4038.1,blat.proc3829889.chain_77	2	blat.proc3829873.chain_417	1
scaffold_15	alt_donor	12106680	12106681	+	asmbl_14480,asmbl_14481	none	STRG.18659.1,STRG.18659.2	2	blat.proc3829879.chain_3249	1
scaffold_26	alt_acceptor	7788342	7788343	+	asmbl_35674	none	STRG.28387.2	1	STRG.28387.1	1
scaffold_3	alt_donor	10275118	10275119	+	asmbl_40210	none	blat.proc3829871.chain_3624	1	STRG.3461.2,blat.proc3829871.chain_3625	2
scaffold_4	spliced_intron	1307873	1308003	+	asmbl_42430	none	STRG.4169.2,blat.proc3829873.chain_473	2	STRG.4169.1,Trinity_GG_2285_c0_g1_i1,blat.proc3829873.chain_474	3
scaffold_8	spliced_intron	16499327	16499685	-	asmbl_53406,asmbl_53411,asmbl_53414,asmbl_53424	none	STRG.10621.2,Trinity_GG_22960_c0_g1_i19,Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i27,blat.proc3829891.chain_2855,blat.proc3829891.chain_2863,blat.proc3829891.chain_2869,blat.proc3829891.chain_2872	8	STRG.10621.3,STRG.10621.4,blat.proc3829891.chain_2859,blat.proc3829891.chain_2862,blat.proc3829891.chain_2865,blat.proc3829891.chain_2871	6
scaffold_14	retained_intron	1069987	1070084	+	asmbl_11762,asmbl_11763	none	Trinity_GG_9205_c0_g1_i2,Trinity_GG_9205_c0_g1_i3,blat.proc3829879.chain_1437,blat.proc3829879.chain_1438	4	STRG.16754.1,STRG.16754.2,STRG.16754.3,STRG.16754.4,blat.proc3829879.chain_1436,blat.proc3829879.chain_1439,blat.proc3829879.chain_1440,blat.proc3829879.chain_1441,blat.proc3829879.chain_1442	9
scaffold_13	retained_intron	7217965	7218245	+	asmbl_11006	none	STRG.16002.2,Trinity_GG_8782_c0_g1_i1,blat.proc3829879.chain_697	3	blat.proc3829879.chain_693,blat.proc3829879.chain_696	2
scaffold_15	retained_intron	15413379	15413488	+	asmbl_14729,asmbl_14730,asmbl_14731,asmbl_14733,asmbl_14734,asmbl_14735,asmbl_14737	none	STRG.18922.2,STRG.18922.3,STRG.18922.4,STRG.18922.6,blat.proc3829879.chain_3551,blat.proc3829879.chain_3552,blat.proc3829879.chain_3553,blat.proc3829879.chain_3556,blat.proc3829879.chain_3557	9	STRG.18922.1,STRG.18922.5,blat.proc3829879.chain_3550,blat.proc3829879.chain_3555	4
scaffold_13	spliced_intron	3777369	3777440	-	asmbl_9537	none	blat.proc3829895.chain_433,blat.proc3829895.chain_447	2	blat.proc3829895.chain_432,blat.proc3829895.chain_443	2
scaffold_15	spliced_intron	395669	395769	-	asmbl_14931	none	STRG.17880.1,blat.proc3829895.chain_2583,blat.proc3829895.chain_2584	3	STRG.17880.2	1
scaffold_23	alt_donor	4899125	4899126	+	asmbl_30834	none	STRG.25862.2,Trinity_GG_14276_c0_g1_i4,blat.proc3829883.chain_2747	3	STRG.25862.1,Trinity_GG_14276_c0_g1_i1,blat.proc3829883.chain_2748	3
scaffold_20	retained_exon	428278	428414	+	asmbl_25506	none	STRG.22729.1	1	STRG.22729.2	1
scaffold_15	retained_intron	9817941	9818374	+	asmbl_14363,asmbl_14364,asmbl_14365	none	STRG.18487.2,blat.proc3829879.chain_3042,blat.proc3829879.chain_3045	3	STRG.18487.1,blat.proc3829879.chain_3044,blat.proc3829879.chain_3046,blat.proc3829879.chain_3047	4
scaffold_12	starts_in_intron	2982417	2982417	+	asmbl_8497	none	blat.proc3829877.chain_3038	1	STRG.14523.1,blat.proc3829877.chain_3037	2
scaffold_15	retained_intron	12435253	12435567	+	asmbl_14508,asmbl_14510,asmbl_14511,asmbl_14512	none	blat.proc3829879.chain_3278,blat.proc3829879.chain_3280,blat.proc3829879.chain_3282,blat.proc3829879.chain_3286	4	STRG.18688.1	1
scaffold_6	alt_acceptor	16607687	16607688	+	asmbl_47648	none	STRG.8378.3	1	STRG.8378.1	1
scaffold_1	starts_in_intron	3654578	3654578	-	asmbl_172	none	blat.proc3829887.chain_105	1	STRG.231.1,blat.proc3829887.chain_106	2
scaffold_4	starts_in_intron	9996705	9996705	+	asmbl_42976	none	blat.proc3829873.chain_1113	1	STRG.4763.1,STRG.4763.2,STRG.4763.4,Trinity_GG_2650_c0_g1_i1,blat.proc3829873.chain_1112,blat.proc3829873.chain_1114,blat.proc3829873.chain_1115,blat.proc3829873.chain_1116	8
scaffold_9	starts_in_intron	4160026	4160026	-	asmbl_54918	none	blat.proc3829891.chain_3181	1	STRG.11008.1,blat.proc3829891.chain_3182,blat.proc3829891.chain_3183	3
scaffold_10	starts_in_intron	770899	770899	+	asmbl_4153	none	Trinity_GG_6646_c1_g1_i12,blat.proc3829877.chain_656	2	STRG.11962.2,STRG.11962.4	2
scaffold_10	skipped_exon	3384603	3386115	+	asmbl_4315	none	STRG.12161.2,Trinity_GG_6743_c0_g1_i1,blat.proc3829877.chain_831	3	STRG.12161.1,Trinity_GG_6743_c0_g1_i2,blat.proc3829877.chain_830	3
scaffold_3	retained_exon	7926286	7927017	+	asmbl_40145	none	STRG.3376.3	1	STRG.3376.1	1
scaffold_11	alt_donor	2203533	2203534	-	asmbl_6461,asmbl_6462,asmbl_6463	none	STRG.13369.1,STRG.13369.2,STRG.13369.4	3	STRG.13369.3	1
scaffold_2	retained_intron	6520144	6520227	+	asmbl_24502	none	Trinity_GG_1139_c0_g1_i1,blat.proc3829871.chain_2078	2	STRG.2022.1,STRG.2022.2,STRG.2022.3,STRG.2022.4,STRG.2022.5,Trinity_GG_1139_c0_g1_i2,blat.proc3829871.chain_2079	7
scaffold_13	starts_in_intron	6046580	6046580	-	asmbl_9727	none	STRG.15900.1,blat.proc3829895.chain_626	2	STRG.15900.2,STRG.15900.3,STRG.15900.4,blat.proc3829895.chain_627,blat.proc3829895.chain_628,blat.proc3829895.chain_629,blat.proc3829895.chain_630	7
scaffold_16	spliced_intron	151929	152211	-	asmbl_16005,asmbl_16009,asmbl_16011	none	STRG.19000.1,Trinity_GG_27691_c0_g1_i4,Trinity_GG_27691_c0_g1_i7,Trinity_GG_27691_c0_g1_i8,blat.proc3829897.chain_69	5	Trinity_GG_27691_c0_g1_i3,blat.proc3829897.chain_66	2
scaffold_10	ends_in_intron	208313	208313	-	asmbl_2840	none	Trinity_GG_23629_c0_g1_i2,blat.proc3829893.chain_334	2	STRG.11904.1,STRG.11904.2,blat.proc3829893.chain_335,blat.proc3829893.chain_336,blat.proc3829893.chain_337	5
scaffold_14	alt_acceptor	11639544	11639545	+	asmbl_12378	none	STRG.17482.2	1	STRG.17482.1	1
scaffold_6	ends_in_intron	3388462	3388462	+	asmbl_46788	none	blat.proc3829873.chain_3478	1	STRG.7345.1,blat.proc3829873.chain_3477	2
scaffold_13	alt_acceptor	16460036	16460037	-	asmbl_10273,asmbl_10274,asmbl_10275,asmbl_10278	none	STRG.16689.1,STRG.16689.4,STRG.16689.5,Trinity_GG_26334_c0_g1_i2,Trinity_GG_26334_c0_g1_i3,Trinity_GG_26334_c0_g1_i4,blat.proc3829895.chain_1353,blat.proc3829895.chain_1354,blat.proc3829895.chain_1355	9	STRG.16689.3,blat.proc3829895.chain_1357	2
scaffold_3	alt_acceptor	1448381	1448382	+	asmbl_39802	none	STRG.2961.1,blat.proc3829871.chain_3047	2	blat.proc3829871.chain_3048	1
scaffold_4	spliced_intron	6283224	6283378	-	asmbl_41407,asmbl_41408,asmbl_41409,asmbl_41410,asmbl_41411	none	STRG.4498.1,STRG.4498.2,Trinity_GG_19560_c0_g1_i1,Trinity_GG_19560_c0_g1_i2,Trinity_GG_19560_c0_g1_i3,Trinity_GG_19560_c0_g1_i6,Trinity_GG_19560_c0_g1_i9,blat.proc3829889.chain_662,blat.proc3829889.chain_663,blat.proc3829889.chain_664,blat.proc3829889.chain_665,blat.proc3829889.chain_666	12	blat.proc3829889.chain_668	1
scaffold_12	alternate_exon	4608896	4609576	-	asmbl_7549,asmbl_7551	none	STRG.14626.3,blat.proc3829893.chain_2997	2	STRG.14626.4,blat.proc3829893.chain_2996,blat.proc3829893.chain_2999	3
scaffold_20	alt_donor	12072235	12072236	+	asmbl_26263	none	STRG.23690.1,blat.proc3829883.chain_785	2	STRG.23690.2,blat.proc3829883.chain_786	2
scaffold_17	ends_in_intron	2358631	2358631	+	asmbl_17773	none	blat.proc3829881.chain_854	1	STRG.20017.1,STRG.20017.2,STRG.20017.4,STRG.20017.5,STRG.20017.6,STRG.20017.7,blat.proc3829881.chain_852,blat.proc3829881.chain_853	8
scaffold_1	alt_donor	9253204	9253205	+	asmbl_1964	none	STRG.616.2	1	STRG.616.1,STRG.616.3,STRG.616.4,Trinity_GG_391_c0_g1_i1,Trinity_GG_391_c0_g1_i2,Trinity_GG_391_c0_g1_i3,blat.proc3829871.chain_680,blat.proc3829871.chain_681,blat.proc3829871.chain_683	9
scaffold_17	starts_in_intron	9488624	9488624	+	asmbl_18220	none	Trinity_GG_11244_c0_g1_i4,blat.proc3829881.chain_1328	2	STRG.20558.1,STRG.20558.2,STRG.20558.3,blat.proc3829881.chain_1326,blat.proc3829881.chain_1327,blat.proc3829881.chain_1329,blat.proc3829881.chain_1330,blat.proc3829881.chain_1331	8
scaffold_12	spliced_intron	12285468	12285624	-	asmbl_7982	none	STRG.15111.1,blat.proc3829893.chain_3508,blat.proc3829893.chain_3509	3	STRG.15111.2	1
scaffold_23	retained_intron	1992483	1992563	+	asmbl_30672	none	STRG.25643.2	1	STRG.25643.1,blat.proc3829883.chain_2553	2
scaffold_12	alt_donor	14195837	14195838	-	asmbl_8129	none	STRG.15238.2	1	STRG.15238.1,blat.proc3829893.chain_3696	2
scaffold_3	skipped_exon	13176718	13177541	+	asmbl_40387,asmbl_40390,asmbl_40391,asmbl_40395	none	STRG.3679.1,blat.proc3829873.chain_76,blat.proc3829873.chain_77,blat.proc3829873.chain_78,blat.proc3829873.chain_80	5	blat.proc3829873.chain_79	1
scaffold_10	skipped_exon	12898265	12898915	-	asmbl_3742,asmbl_3745,asmbl_3746	none	STRG.12877.1,blat.proc3829893.chain_1339,blat.proc3829893.chain_1340,blat.proc3829893.chain_1341	4	blat.proc3829893.chain_1336	1
scaffold_18	retained_intron	632566	632852	+	asmbl_20335	none	STRG.20993.2,blat.proc3829881.chain_1870	2	STRG.20993.1,blat.proc3829881.chain_1871	2
scaffold_3	starts_in_intron	8994554	8994554	-	asmbl_39002	none	blat.proc3829887.chain_3229,blat.proc3829887.chain_3232	2	STRG.3425.1,STRG.3425.2,blat.proc3829887.chain_3227,blat.proc3829887.chain_3228,blat.proc3829887.chain_3230,blat.proc3829887.chain_3231	6
scaffold_9	alternate_exon	9616774	9617970	-	asmbl_55186	none	STRG.11320.1,blat.proc3829891.chain_3418	2	STRG.11320.2,blat.proc3829891.chain_3417	2
scaffold_28	alternate_exon	5240488	5240527	+	asmbl_38275	none	STRG.29653.3	1	STRG.29653.1,Trinity_GG_16447_c0_g1_i2,Trinity_GG_16447_c0_g1_i3,blat.proc3829885.chain_2778,blat.proc3829885.chain_2779	5
scaffold_3	alternate_exon	11634191	11641666	+	asmbl_40318	none	STRG.3593.1,Trinity_GG_2031_c1_g1_i2,blat.proc3829873.chain_14,blat.proc3829873.chain_16	4	STRG.3593.4	1
scaffold_23	spliced_intron	7005777	7006309	-	asmbl_31727	none	STRG.26005.3,blat.proc3829899.chain_3077	2	Trinity_GG_31538_c0_g1_i2,blat.proc3829899.chain_3076	2
scaffold_19	starts_in_intron	9487919	9487919	-	asmbl_21539	none	STRG.22368.2,blat.proc3829897.chain_3078	2	STRG.22368.1,blat.proc3829897.chain_3079,blat.proc3829897.chain_3080	3
scaffold_17	retained_exon	2356344	2356400	+	asmbl_17766,asmbl_17767,asmbl_17770	none	STRG.20017.4,STRG.20017.5,STRG.20017.6	3	STRG.20017.2,STRG.20017.7	2
scaffold_60	spliced_intron	15832	15983	-	asmbl_49397	none	blat.proc3829901.chain_3171	1	blat.proc3829901.chain_3173	1
scaffold_6	alternate_exon	14855260	14855302	-	asmbl_48977	none	STRG.8256.3	1	STRG.8256.2,Trinity_GG_21715_c2_g1_i1,blat.proc3829891.chain_578	3
scaffold_1	retained_exon	11745463	11745630	+	asmbl_2123	none	STRG.787.1,blat.proc3829871.chain_878	2	STRG.787.2,blat.proc3829871.chain_880	2
scaffold_21	starts_in_intron	5532738	5532738	-	asmbl_27694	none	blat.proc3829899.chain_1088	1	STRG.24071.2,blat.proc3829899.chain_1090	2
scaffold_12	spliced_intron	7670363	7670489	+	asmbl_8749,asmbl_8751	none	STRG.14838.1,STRG.14838.2,Trinity_GG_8201_c0_g1_i4,blat.proc3829877.chain_3335,blat.proc3829877.chain_3336	5	Trinity_GG_8201_c0_g1_i5,blat.proc3829877.chain_3333,blat.proc3829877.chain_3334	3
scaffold_4	alt_acceptor	14626635	14626636	+	asmbl_43238	none	STRG.5089.2	1	STRG.5089.1,blat.proc3829873.chain_1420	2
scaffold_15	alt_acceptor	15242407	15242408	-	asmbl_15782	none	STRG.18898.2	1	STRG.18898.1,Trinity_GG_27630_c0_g1_i2,blat.proc3829895.chain_3678	3
scaffold_15	retained_intron	12133093	12133392	-	asmbl_15581	none	blat.proc3829895.chain_3378	1	STRG.18680.1,blat.proc3829895.chain_3377	2
scaffold_3	retained_intron	13463114	13463211	+	asmbl_40401	none	blat.proc3829873.chain_33	1	STRG.3701.1,blat.proc3829873.chain_31,blat.proc3829873.chain_32	3
scaffold_11	alt_acceptor	4666734	4666735	+	asmbl_5457	none	STRG.13546.4	1	STRG.13546.2,blat.proc3829877.chain_1979,blat.proc3829877.chain_1981,blat.proc3829877.chain_1982	4
scaffold_22	ends_in_intron	3785787	3785787	-	asmbl_29946	none	Trinity_GG_30857_c0_g1_i2	1	blat.proc3829899.chain_1896	1
scaffold_5	retained_intron	939477	939513	-	asmbl_45186	none	STRG.5635.1	1	STRG.5635.2	1
scaffold_6	spliced_intron	16104047	16104276	-	asmbl_49039	none	blat.proc3829891.chain_654	1	Trinity_GG_21765_c0_g1_i2	1
scaffold_13	spliced_intron	7109446	7110796	+	asmbl_11000	none	STRG.15994.2	1	STRG.15994.1,Trinity_GG_8796_c0_g1_i5,Trinity_GG_8796_c0_g1_i9,blat.proc3829879.chain_723	4
scaffold_28	alt_donor	7720499	7720500	+	asmbl_38400	none	Trinity_GG_16523_c1_g1_i2,blat.proc3829885.chain_2926	2	STRG.29824.1,Trinity_GG_16523_c1_g1_i1,blat.proc3829885.chain_2922,blat.proc3829885.chain_2923	4
scaffold_1	spliced_intron	14334145	14334239	-	asmbl_894,asmbl_896	none	STRG.1029.1,STRG.1029.2,blat.proc3829887.chain_929,blat.proc3829887.chain_931	4	STRG.1029.3,blat.proc3829887.chain_930	2
scaffold_15	alt_acceptor	11401782	11401783	-	asmbl_15510,asmbl_15511	none	STRG.18596.1,STRG.18596.5,blat.proc3829895.chain_3373,blat.proc3829895.chain_3374	4	STRG.18596.2,STRG.18596.3,blat.proc3829895.chain_3375	3
scaffold_25	spliced_intron	5158234	5158408	-	asmbl_34225,asmbl_34231	none	STRG.27422.1,blat.proc3829901.chain_746,blat.proc3829901.chain_747	3	blat.proc3829901.chain_742,blat.proc3829901.chain_749	2
scaffold_4	spliced_intron	12380946	12380988	-	asmbl_41655	none	STRG.4873.2	1	STRG.4873.1,Trinity_GG_19731_c0_g1_i2,blat.proc3829889.chain_938,blat.proc3829889.chain_939	4
scaffold_22	alternate_exon	1006301	1008843	+	asmbl_29209	none	blat.proc3829883.chain_1810	1	STRG.24742.1,Trinity_GG_13691_c0_g1_i6,blat.proc3829883.chain_1811	3
scaffold_1	alt_acceptor	3618333	3618334	+	asmbl_1613	none	blat.proc3829871.chain_280	1	STRG.224.1,blat.proc3829871.chain_279,blat.proc3829871.chain_282	3
scaffold_3	alt_donor	11977981	11977982	+	asmbl_40336,asmbl_40337	none	STRG.3621.1,STRG.3621.2,Trinity_GG_2035_c0_g1_i1,Trinity_GG_2035_c0_g1_i2,blat.proc3829873.chain_20,blat.proc3829873.chain_21	6	STRG.3621.3	1
scaffold_16	alt_donor	14627049	14627050	+	asmbl_17495	none	Trinity_GG_10867_c0_g1_i1,blat.proc3829881.chain_684	2	STRG.19842.1,STRG.19842.2,Trinity_GG_10867_c0_g1_i2,blat.proc3829881.chain_685	4
scaffold_19	alt_donor	752111	752112	-	asmbl_21208	none	STRG.21848.1,blat.proc3829897.chain_2612	2	Trinity_GG_29196_c0_g1_i1,blat.proc3829897.chain_2611	2
scaffold_6	ends_in_intron	2478208	2478208	-	asmbl_48076,asmbl_48080	none	blat.proc3829889.chain_3222,blat.proc3829889.chain_3223	2	STRG.7236.1,STRG.7236.2,STRG.7236.3,blat.proc3829889.chain_3219,blat.proc3829889.chain_3220	5
scaffold_1	alt_donor	11728132	11728133	+	asmbl_2122	none	STRG.786.1,Trinity_GG_491_c0_g1_i1,blat.proc3829871.chain_870	3	STRG.786.2,Trinity_GG_491_c0_g1_i2,blat.proc3829871.chain_869	3
scaffold_4	alt_acceptor	12568143	12568144	-	asmbl_41671	none	STRG.4894.1,blat.proc3829889.chain_958	2	STRG.4894.2	1
scaffold_1	retained_exon	15280154	15280373	+	asmbl_2415	none	STRG.1091.2,blat.proc3829871.chain_1167	2	STRG.1091.1	1
scaffold_12	retained_exon	9889568	9889672	+	asmbl_8856	none	STRG.14944.2,blat.proc3829877.chain_3445	2	STRG.14944.1,blat.proc3829877.chain_3444	2
scaffold_24	starts_in_intron	2964799	2964799	-	asmbl_32796	none	blat.proc3829899.chain_3493	1	STRG.26485.1,blat.proc3829899.chain_3494,blat.proc3829899.chain_3495	3
scaffold_10	alternate_exon	2718417	2718571	+	asmbl_4279	none	STRG.12081.2,blat.proc3829877.chain_817	2	STRG.12081.1,blat.proc3829877.chain_816	2
scaffold_5	ends_in_intron	15486936	15486936	+	asmbl_44661,asmbl_44662	none	STRG.6727.1,STRG.6727.2	2	STRG.6727.3	1
scaffold_10	alt_donor	4128325	4128326	-	asmbl_3176	none	STRG.12241.2	1	STRG.12241.1,blat.proc3829893.chain_640,blat.proc3829893.chain_642	3
scaffold_19	alt_acceptor	11528972	11528973	-	asmbl_21627	none	STRG.22476.1,blat.proc3829897.chain_3123	2	STRG.22476.4	1
scaffold_1	alternate_exon	12488033	12488074	+	asmbl_2214	none	STRG.859.1	1	STRG.859.2,STRG.859.3,Trinity_GG_525_c0_g1_i2,blat.proc3829871.chain_944	4
scaffold_21	retained_intron	4967429	4967605	-	asmbl_27628	none	blat.proc3829899.chain_1096	1	STRG.24031.1,blat.proc3829899.chain_1095,blat.proc3829899.chain_1097	3
scaffold_21	spliced_intron	5137245	5137358	-	asmbl_27634,asmbl_27635	none	STRG.24046.1,STRG.24046.4	2	STRG.24046.7	1
scaffold_21	alternate_exon	9881561	9881611	-	asmbl_28005	none	STRG.24436.1	1	STRG.24436.2	1
scaffold_3	skipped_exon	18494690	18496221	-	asmbl_39574	none	STRG.4046.1,blat.proc3829889.chain_75	2	STRG.4046.2	1
scaffold_15	alt_acceptor	1988740	1988741	+	asmbl_13986	none	STRG.17976.1,blat.proc3829879.chain_2655	2	STRG.17976.2,blat.proc3829879.chain_2654	2
scaffold_7	starts_in_intron	12437023	12437023	+	asmbl_51143,asmbl_51145	none	STRG.9337.2,blat.proc3829875.chain_1796,blat.proc3829875.chain_1797	3	STRG.9337.1	1
scaffold_8	starts_in_intron	9576325	9576325	-	asmbl_53048	none	blat.proc3829891.chain_2362	1	STRG.10205.1,blat.proc3829891.chain_2360,blat.proc3829891.chain_2361	3
scaffold_3	alt_donor	15787001	15787002	-	asmbl_39399	none	STRG.3856.2	1	STRG.3856.1,STRG.3856.4	2
scaffold_2	retained_exon	5375679	5375991	-	asmbl_23172	none	blat.proc3829887.chain_1847	1	STRG.1946.2,blat.proc3829887.chain_1848	2
scaffold_2	skipped_exon	16277574	16278279	+	asmbl_25130,asmbl_25133	none	blat.proc3829871.chain_2777,blat.proc3829871.chain_2783	2	STRG.2564.1,STRG.2564.3,blat.proc3829871.chain_2780,blat.proc3829871.chain_2781,blat.proc3829871.chain_2782,blat.proc3829871.chain_2784,blat.proc3829871.chain_2785,blat.proc3829871.chain_2786	8
scaffold_23	starts_in_intron	7432170	7432170	+	asmbl_30993	none	Trinity_GG_14378_c0_g1_i2,blat.proc3829883.chain_2928	2	STRG.26038.1,blat.proc3829883.chain_2927	2
scaffold_24	retained_exon	2520807	2520854	-	asmbl_32782	none	STRG.26451.1,blat.proc3829899.chain_3521	2	blat.proc3829899.chain_3519	1
scaffold_12	alt_donor	10391428	10391429	-	asmbl_7880	none	STRG.15000.1,blat.proc3829893.chain_3390	2	STRG.15000.2,blat.proc3829893.chain_3389	2
scaffold_6	retained_intron	15945018	15945059	+	asmbl_47619	none	STRG.8316.1	1	STRG.8316.3	1
scaffold_12	retained_intron	15213364	15213677	+	asmbl_9076	none	STRG.15307.2,Trinity_GG_8383_c0_g1_i1,blat.proc3829877.chain_3666	3	STRG.15307.1,STRG.15307.3,Trinity_GG_8383_c0_g1_i2,Trinity_GG_8383_c0_g1_i3,Trinity_GG_8383_c0_g1_i4,blat.proc3829877.chain_3663,blat.proc3829877.chain_3664,blat.proc3829877.chain_3665	8
scaffold_1	alternate_exon	20988980	20989023	+	asmbl_2660	none	blat.proc3829871.chain_1501	1	STRG.1431.3,Trinity_GG_838_c0_g1_i4,blat.proc3829871.chain_1500	3
scaffold_25	starts_in_intron	5782272	5782272	+	asmbl_33583	none	blat.proc3829885.chain_509	1	STRG.27456.1,STRG.27456.2,STRG.27456.3,blat.proc3829885.chain_505	4
scaffold_9	alt_acceptor	8094272	8094273	-	asmbl_55087	none	STRG.11229.1,blat.proc3829891.chain_3381	2	STRG.11229.2	1
scaffold_6	retained_intron	12484088	12484230	+	asmbl_47339	none	STRG.8000.3,Trinity_GG_4381_c0_g1_i3,blat.proc3829875.chain_394	3	STRG.8000.1,STRG.8000.2,STRG.8000.4,Trinity_GG_4381_c0_g1_i1,Trinity_GG_4381_c0_g1_i2,blat.proc3829875.chain_392,blat.proc3829875.chain_393	7
scaffold_9	alt_acceptor	4899241	4899242	+	asmbl_53948,asmbl_53949	none	STRG.11053.1,blat.proc3829875.chain_3518	2	STRG.11053.2	1
scaffold_12	starts_in_intron	15112789	15112789	-	asmbl_8184	none	blat.proc3829893.chain_3749	1	STRG.15296.1,blat.proc3829893.chain_3748	2
scaffold_21	ends_in_intron	5449675	5449675	+	asmbl_28586	none	STRG.24067.3,blat.proc3829883.chain_1256	2	STRG.24067.1,STRG.24067.2,Trinity_GG_13358_c1_g2_i1,Trinity_GG_13358_c1_g2_i2,blat.proc3829883.chain_1254,blat.proc3829883.chain_1255	6
scaffold_15	alt_acceptor	2448003	2448004	+	asmbl_13996	none	STRG.18013.2	1	STRG.18013.5	1
scaffold_9	alternate_exon	11851239	11853374	-	asmbl_55302	none	STRG.11492.2,blat.proc3829891.chain_3609	2	blat.proc3829891.chain_3610	1
scaffold_2	spliced_intron	7240470	7240767	+	asmbl_24584,asmbl_24585,asmbl_24586,asmbl_24587,asmbl_24588,asmbl_24589,asmbl_24590,asmbl_24591	none	STRG.2061.1,blat.proc3829871.chain_2164,blat.proc3829871.chain_2165,blat.proc3829871.chain_2166,blat.proc3829871.chain_2168,blat.proc3829871.chain_2169,blat.proc3829871.chain_2170,blat.proc3829871.chain_2171,blat.proc3829871.chain_2172	9	Trinity_GG_1178_c0_g1_i9,blat.proc3829871.chain_2167	2
scaffold_11	alternate_exon	2772483	2772718	+	asmbl_5335	none	STRG.13390.2	1	STRG.13390.1	1
scaffold_28	alt_acceptor	1576299	1576300	+	asmbl_38005	none	STRG.29324.2	1	STRG.29324.1,blat.proc3829885.chain_2450	2
scaffold_16	spliced_intron	8086575	8086765	-	asmbl_16404,asmbl_16405	none	STRG.19441.1,blat.proc3829897.chain_444,blat.proc3829897.chain_447,blat.proc3829897.chain_449	4	Trinity_GG_27908_c0_g3_i1,blat.proc3829897.chain_450	2
scaffold_2	alt_donor	8278580	8278581	+	asmbl_24657	none	STRG.2112.2,blat.proc3829871.chain_2126	2	STRG.2112.1,blat.proc3829871.chain_2125	2
scaffold_25	spliced_intron	9431822	9432003	+	asmbl_33806	none	STRG.27738.3	1	Trinity_GG_15317_c1_g1_i2,blat.proc3829885.chain_782	2
scaffold_1	ends_in_intron	3614607	3614607	-	asmbl_170	none	Trinity_GG_17146_c0_g1_i4,blat.proc3829887.chain_128	2	STRG.223.1,blat.proc3829887.chain_129	2
scaffold_28	skipped_exon	3320505	3322855	+	asmbl_38166	none	STRG.29527.1,blat.proc3829885.chain_2658	2	STRG.29527.2	1
scaffold_9	retained_exon	8395320	8395340	+	asmbl_54157	none	STRG.11249.1,blat.proc3829877.chain_17	2	STRG.11249.5,blat.proc3829877.chain_20	2
scaffold_3	retained_exon	11659462	11659533	+	asmbl_40326,asmbl_40327	none	STRG.3612.1,STRG.3612.4,Trinity_GG_2013_c0_g1_i1,blat.proc3829871.chain_3737	4	STRG.3612.2,STRG.3612.3,Trinity_GG_2013_c0_g1_i4,Trinity_GG_2013_c0_g1_i5,blat.proc3829871.chain_3734,blat.proc3829871.chain_3736,blat.proc3829871.chain_3738	7
scaffold_13	skipped_exon	2352642	2354609	+	asmbl_10588,asmbl_10590	none	STRG.15543.3,STRG.15543.6	2	blat.proc3829879.chain_152,blat.proc3829879.chain_157	2
scaffold_6	ends_in_intron	16381365	16381365	-	asmbl_49063	none	Trinity_GG_21776_c0_g1_i2,blat.proc3829891.chain_676	2	STRG.8359.1,Trinity_GG_21776_c0_g1_i1,blat.proc3829891.chain_675	3
scaffold_21	retained_intron	10987237	10987279	+	asmbl_28918,asmbl_28919	none	blat.proc3829883.chain_1590,blat.proc3829883.chain_1591	2	STRG.24568.1,blat.proc3829883.chain_1589	2
scaffold_2	alt_donor	5183573	5183574	-	asmbl_23162	none	blat.proc3829887.chain_1859	1	STRG.1936.2,blat.proc3829887.chain_1860	2
scaffold_20	alt_donor	1624295	1624296	-	asmbl_26525	none	STRG.22888.1	1	STRG.22888.2,STRG.22888.3	2
scaffold_13	retained_intron	8013555	8013678	+	asmbl_11078	none	blat.proc3829879.chain_762	1	STRG.16066.1,STRG.16066.2,blat.proc3829879.chain_761,blat.proc3829879.chain_765	4
scaffold_22	alt_donor	6151912	6151913	-	asmbl_30078,asmbl_30083	none	STRG.24952.2,blat.proc3829899.chain_2022	2	STRG.24952.1,STRG.24952.3,blat.proc3829899.chain_2023	3
scaffold_22	alternate_exon	2394597	2408346	+	asmbl_29232	none	STRG.24765.1,blat.proc3829883.chain_1762	2	blat.proc3829883.chain_1747	1
scaffold_1	ends_in_intron	12759061	12759061	-	asmbl_768	none	blat.proc3829887.chain_751	1	STRG.894.1,STRG.894.2,blat.proc3829887.chain_750,blat.proc3829887.chain_752	4
scaffold_11	retained_intron	5821149	5821247	-	asmbl_6656	none	blat.proc3829893.chain_2066	1	STRG.13636.1,blat.proc3829893.chain_2064	2
scaffold_3	alternate_exon	2968391	2968433	-	asmbl_38706	none	STRG.3049.2	1	STRG.3049.1,blat.proc3829887.chain_2833	2
scaffold_10	spliced_intron	3129132	3129956	-	asmbl_3082	none	STRG.12130.3	1	STRG.12130.2,Trinity_GG_23778_c0_g1_i1,Trinity_GG_23778_c0_g1_i4,blat.proc3829893.chain_592,blat.proc3829893.chain_593	5
scaffold_9	alt_acceptor	6846918	6846919	-	asmbl_55037,asmbl_55040	none	STRG.11185.2,STRG.11185.4,blat.proc3829891.chain_3258,blat.proc3829891.chain_3259	4	STRG.11185.1,blat.proc3829891.chain_3260	2
scaffold_21	retained_exon	7725836	7725996	+	asmbl_28780	none	STRG.24301.1	1	STRG.24301.2,blat.proc3829883.chain_1449	2
scaffold_4	starts_in_intron	5280252	5280252	-	asmbl_41326	none	STRG.4428.2	1	STRG.4428.1,blat.proc3829889.chain_534,blat.proc3829889.chain_535	3
scaffold_14	starts_in_intron	6986943	6986943	-	asmbl_13154	none	blat.proc3829895.chain_1834	1	STRG.17122.1,blat.proc3829895.chain_1833,blat.proc3829895.chain_1835	3
scaffold_19	retained_intron	5464093	5464178	+	asmbl_22180	none	blat.proc3829881.chain_3057	1	STRG.22103.1,blat.proc3829881.chain_3055,blat.proc3829881.chain_3056,blat.proc3829881.chain_3060	4
scaffold_25	skipped_exon	637428	638058	-	asmbl_33986	none	STRG.27095.2,blat.proc3829901.chain_338	2	STRG.27095.3	1
scaffold_11	retained_intron	9926131	9926272	+	asmbl_5883	none	blat.proc3829877.chain_2501	1	STRG.13999.1,Trinity_GG_7727_c1_g1_i2,blat.proc3829877.chain_2502	3
scaffold_11	alt_acceptor	11930763	11930764	-	asmbl_7021	none	STRG.14160.2	1	STRG.14160.1	1
scaffold_17	starts_in_intron	8062371	8062371	+	asmbl_18065	none	Trinity_GG_11159_c2_g1_i1,blat.proc3829881.chain_1156	2	STRG.20418.1,blat.proc3829881.chain_1153,blat.proc3829881.chain_1154	3
scaffold_24	starts_in_intron	6226718	6226718	-	asmbl_32929,asmbl_32930,asmbl_32938,asmbl_32940	none	STRG.26664.3,blat.proc3829899.chain_3687,blat.proc3829899.chain_3693,blat.proc3829899.chain_3696	4	STRG.26664.1,STRG.26664.2,Trinity_GG_31899_c0_g1_i6,Trinity_GG_31899_c0_g1_i9,blat.proc3829899.chain_3686,blat.proc3829899.chain_3688,blat.proc3829899.chain_3690,blat.proc3829899.chain_3692,blat.proc3829899.chain_3695	9
scaffold_6	spliced_intron	7169018	7171242	+	asmbl_46988,asmbl_46989,asmbl_46990	none	STRG.7621.1,STRG.7621.3,blat.proc3829873.chain_3739	3	STRG.7621.2,STRG.7621.4,Trinity_GG_4175_c0_g1_i3,blat.proc3829873.chain_3738	4
scaffold_27	retained_intron	4799664	4799998	-	asmbl_36926	none	Trinity_GG_33190_c0_g1_i1,blat.proc3829901.chain_2062	2	STRG.28890.1,STRG.28890.2,Trinity_GG_33190_c0_g1_i2,blat.proc3829901.chain_2061	4
scaffold_8	spliced_intron	4194620	4194679	-	asmbl_52751	none	STRG.9887.2	1	STRG.9887.1	1
scaffold_5	retained_intron	11991739	11992176	-	asmbl_45811,asmbl_45813	none	STRG.6447.4,blat.proc3829889.chain_2519,blat.proc3829889.chain_2520	3	STRG.6447.5	1
scaffold_3	retained_intron	800441	800585	-	asmbl_38632	none	STRG.2910.4,Trinity_GG_18623_c0_g1_i2,blat.proc3829887.chain_2742	3	STRG.2910.1,STRG.2910.2,blat.proc3829887.chain_2740,blat.proc3829887.chain_2741	4
scaffold_9	starts_in_intron	6846618	6846618	-	asmbl_55041	none	blat.proc3829891.chain_3261	1	STRG.11185.1,STRG.11185.2,STRG.11185.3,STRG.11185.4,blat.proc3829891.chain_3258,blat.proc3829891.chain_3259,blat.proc3829891.chain_3260	7
scaffold_25	alt_acceptor	9307161	9307162	-	asmbl_34461	none	STRG.27724.1,blat.proc3829901.chain_1020	2	STRG.27724.2	1
scaffold_18	retained_intron	4605161	4605249	-	asmbl_19850	none	blat.proc3829897.chain_2110	1	STRG.21236.1,blat.proc3829897.chain_2111	2
scaffold_5	starts_in_intron	9583736	9583736	-	asmbl_45676	none	blat.proc3829889.chain_2364	1	STRG.6268.1,blat.proc3829889.chain_2363	2
scaffold_9	skipped_exon	5286019	5288508	+	asmbl_54006,asmbl_54008	none	STRG.11103.1,STRG.11103.3,blat.proc3829875.chain_3571,blat.proc3829875.chain_3572	4	STRG.11103.2,blat.proc3829875.chain_3574,blat.proc3829875.chain_3576	3
scaffold_8	skipped_exon	9881810	9883103	+	asmbl_52116	none	STRG.10228.2,blat.proc3829875.chain_2739	2	STRG.10228.1,blat.proc3829875.chain_2738	2
scaffold_6	alt_donor	13000119	13000120	-	asmbl_48792,asmbl_48793,asmbl_48794,asmbl_48795,asmbl_48796,asmbl_48797,asmbl_48799,asmbl_48804,asmbl_48805	none	STRG.8061.1,STRG.8061.2,STRG.8061.3,STRG.8061.4,STRG.8061.5,STRG.8061.8,Trinity_GG_21547_c0_g1_i10,Trinity_GG_21547_c0_g1_i7,blat.proc3829891.chain_259,blat.proc3829891.chain_260,blat.proc3829891.chain_262,blat.proc3829891.chain_263,blat.proc3829891.chain_264,blat.proc3829891.chain_269,blat.proc3829891.chain_271,blat.proc3829891.chain_272,blat.proc3829891.chain_273,blat.proc3829891.chain_275	18	STRG.8061.6,Trinity_GG_21547_c0_g1_i18,Trinity_GG_21547_c0_g1_i2,blat.proc3829891.chain_265,blat.proc3829891.chain_267	5
scaffold_5	spliced_intron	16321133	16321283	+	asmbl_44743,asmbl_44746	none	STRG.6820.1,blat.proc3829873.chain_2898,blat.proc3829873.chain_2901	3	blat.proc3829873.chain_2899	1
scaffold_21	spliced_intron	6618853	6618996	+	asmbl_28691,asmbl_28692,asmbl_28694	none	STRG.24174.1,blat.proc3829883.chain_1356,blat.proc3829883.chain_1357,blat.proc3829883.chain_1359	4	blat.proc3829883.chain_1358	1
scaffold_423	alt_acceptor	669	670	+	asmbl_43665	none	STRG.30294.1	1	STRG.30294.2	1
scaffold_8	alt_donor	15150634	15150635	-	asmbl_53328	none	STRG.10536.1,blat.proc3829891.chain_2682	2	STRG.10536.2	1
scaffold_22	ends_in_intron	10523511	10523511	+	asmbl_29649	none	Trinity_GG_13996_c0_g1_i1,blat.proc3829883.chain_2298	2	STRG.25380.1,Trinity_GG_13996_c0_g1_i2,blat.proc3829883.chain_2297	3
scaffold_7	retained_intron	12082375	12082549	+	asmbl_51097	none	Trinity_GG_5111_c0_g1_i2,blat.proc3829875.chain_1656	2	STRG.9310.1,STRG.9310.3,Trinity_GG_5111_c0_g1_i1,blat.proc3829875.chain_1658	4
scaffold_20	alt_acceptor	2064125	2064126	+	asmbl_25620	none	STRG.22927.2	1	STRG.22927.1	1
scaffold_6	alternate_exon	1761823	1762184	+	asmbl_46690	none	STRG.7217.1,blat.proc3829873.chain_3293	2	STRG.7217.2	1
scaffold_21	spliced_intron	7009393	7009561	-	asmbl_27799,asmbl_27800	none	STRG.24222.1,STRG.24222.2,blat.proc3829899.chain_1273,blat.proc3829899.chain_1275	4	blat.proc3829899.chain_1274	1
scaffold_6	alt_donor	15944871	15944872	+	asmbl_47618	none	blat.proc3829891.chain_588	1	STRG.8316.2	1
scaffold_6	starts_in_intron	1747773	1747773	+	asmbl_46687	none	Trinity_GG_3928_c0_g1_i3,blat.proc3829873.chain_3272	2	STRG.7223.1,STRG.7223.2,STRG.7223.3,Trinity_GG_3928_c0_g1_i1,blat.proc3829873.chain_3274,blat.proc3829873.chain_3275	6
scaffold_12	retained_intron	1066676	1067984	-	asmbl_7427,asmbl_7428	none	Trinity_GG_25065_c0_g1_i2,blat.proc3829893.chain_2841,blat.proc3829893.chain_2842	3	STRG.14439.1,blat.proc3829893.chain_2843	2
scaffold_5	alt_donor	18561018	18561019	+	asmbl_44920,asmbl_44922,asmbl_44924,asmbl_44926,asmbl_44927	none	STRG.6978.1,STRG.6978.2,STRG.6978.3,STRG.6978.4,Trinity_GG_3847_c0_g1_i2,blat.proc3829873.chain_3147,blat.proc3829873.chain_3148,blat.proc3829873.chain_3150	8	STRG.6978.5,Trinity_GG_3847_c0_g1_i8,blat.proc3829873.chain_3146	3
scaffold_5	alt_donor	15715981	15715982	-	asmbl_46100	none	STRG.6752.1	1	blat.proc3829889.chain_2817	1
scaffold_4	alt_acceptor	19579647	19579648	-	asmbl_42208	none	STRG.5543.3	1	STRG.5543.1,STRG.5543.2,blat.proc3829889.chain_1639,blat.proc3829889.chain_1640,blat.proc3829889.chain_1641	5
scaffold_14	retained_intron	15565823	15565849	+	asmbl_12607,asmbl_12609	none	STRG.17784.1,STRG.17784.2	2	blat.proc3829879.chain_2468	1
scaffold_29	spliced_intron	56911	57031	+	asmbl_38594	none	blat.proc3829885.chain_3092	1	STRG.29995.1,Trinity_GG_16607_c1_g1_i1,blat.proc3829885.chain_3069	3
scaffold_22	alternate_exon	11421458	11421491	+	asmbl_29671	none	STRG.25467.2,Trinity_GG_14055_c0_g1_i1,blat.proc3829883.chain_2387	3	STRG.25467.1,Trinity_GG_14055_c0_g1_i2,blat.proc3829883.chain_2388	3
scaffold_8	skipped_exon	11852641	11854227	+	asmbl_52271	none	blat.proc3829875.chain_2980	1	STRG.10382.3,blat.proc3829875.chain_2968,blat.proc3829875.chain_2975,blat.proc3829875.chain_2979	4
scaffold_6	alt_acceptor	2478898	2478899	-	asmbl_48075,asmbl_48077,asmbl_48079,asmbl_48080	none	STRG.7236.1,STRG.7236.3,blat.proc3829889.chain_3219,blat.proc3829889.chain_3220,blat.proc3829889.chain_3223	5	STRG.7236.2	1
scaffold_16	alt_acceptor	14084316	14084317	-	asmbl_16609	none	blat.proc3829897.chain_695	1	STRG.19792.1	1
scaffold_21	skipped_exon	4099856	4102411	+	asmbl_28522	none	STRG.23984.2	1	STRG.23984.4	1
scaffold_25	starts_in_intron	1460524	1460524	+	asmbl_33375	none	blat.proc3829885.chain_241	1	blat.proc3829885.chain_242	1
scaffold_12	spliced_intron	9855571	9855735	-	asmbl_7827	none	blat.proc3829893.chain_3328	1	STRG.14941.1,blat.proc3829893.chain_3329	2
scaffold_23	starts_in_intron	2634717	2634717	+	asmbl_30715	none	Trinity_GG_14194_c0_g1_i4,blat.proc3829883.chain_2617	2	STRG.25710.1,STRG.25710.2,Trinity_GG_14194_c0_g1_i5,blat.proc3829883.chain_2619	4
scaffold_27	spliced_intron	2536912	2537126	+	asmbl_36047	none	STRG.28704.1,blat.proc3829885.chain_1763	2	blat.proc3829885.chain_1762	1
scaffold_27	retained_exon	4945078	4945192	+	asmbl_36282,asmbl_36283,asmbl_36284	none	STRG.28914.1,STRG.28914.2,STRG.28914.3,blat.proc3829885.chain_2069	4	STRG.28914.4,STRG.28914.7	2
scaffold_21	alternate_exon	8133906	8133935	-	asmbl_27910	none	STRG.24334.5,blat.proc3829899.chain_1385	2	blat.proc3829899.chain_1382,blat.proc3829899.chain_1383,blat.proc3829899.chain_1387	3
scaffold_11	ends_in_intron	11933156	11933156	-	asmbl_7030	none	Trinity_GG_24916_c9_g1_i1,blat.proc3829893.chain_2572	2	STRG.14160.1,STRG.14160.2,STRG.14160.3,STRG.14160.4,STRG.14160.5	5
scaffold_12	alt_acceptor	14173744	14173745	+	asmbl_9033	none	STRG.15236.3,blat.proc3829877.chain_3707	2	blat.proc3829877.chain_3704	1
scaffold_28	skipped_exon	539383	539895	-	asmbl_37233,asmbl_37234,asmbl_37235	none	STRG.29258.2,STRG.29258.3,blat.proc3829901.chain_2295	3	STRG.29258.1,blat.proc3829901.chain_2296	2
scaffold_5	alt_donor	3774989	3774990	+	asmbl_43904	none	STRG.5834.3	1	STRG.5834.1,STRG.5834.2,blat.proc3829873.chain_2012,blat.proc3829873.chain_2013	4
scaffold_19	retained_intron	12958865	12958948	-	asmbl_21777	none	Trinity_GG_29572_c0_g1_i6,blat.proc3829897.chain_3295	2	STRG.22600.1,Trinity_GG_29572_c0_g1_i7,blat.proc3829897.chain_3292	3
scaffold_15	alternate_exon	2447883	2448004	+	asmbl_13997	none	STRG.18013.5	1	STRG.18013.2	1
scaffold_27	starts_in_intron	328435	328435	-	asmbl_36620	none	Trinity_GG_32973_c0_g1_i1,blat.proc3829901.chain_1721	2	STRG.28541.1,Trinity_GG_32973_c0_g1_i4,blat.proc3829901.chain_1722	3
scaffold_13	spliced_intron	4077097	4077213	+	asmbl_10736	none	STRG.15714.3,blat.proc3829879.chain_416	2	STRG.15714.1,STRG.15714.2,Trinity_GG_8643_c0_g1_i4,blat.proc3829879.chain_417,blat.proc3829879.chain_419	5
scaffold_13	starts_in_intron	1338867	1338867	+	asmbl_10534	none	Trinity_GG_8537_c0_g1_i3,blat.proc3829879.chain_228	2	STRG.15489.1,STRG.15489.2,Trinity_GG_8537_c0_g1_i1,blat.proc3829879.chain_229,blat.proc3829879.chain_230	5
scaffold_1	alternate_exon	20990735	20990920	+	asmbl_2657	none	STRG.1431.2,Trinity_GG_838_c0_g1_i1,blat.proc3829871.chain_1499	3	STRG.1431.3,Trinity_GG_838_c0_g1_i4,blat.proc3829871.chain_1500	3
scaffold_22	starts_in_intron	10012398	10012398	-	asmbl_30344	none	blat.proc3829899.chain_2354	1	STRG.25332.1,blat.proc3829899.chain_2353	2
scaffold_3	spliced_intron	3268072	3268486	-	asmbl_38716,asmbl_38717,asmbl_38721	none	STRG.3088.1,STRG.3088.2,STRG.3088.3,blat.proc3829887.chain_2792,blat.proc3829887.chain_2794	5	blat.proc3829887.chain_2796	1
scaffold_16	alternate_exon	14544286	14544701	-	asmbl_16643	none	STRG.19822.4	1	STRG.19822.3	1
scaffold_1	alt_donor	5962697	5962698	-	asmbl_308,asmbl_312	none	STRG.395.1,blat.proc3829887.chain_271,blat.proc3829887.chain_273	3	blat.proc3829887.chain_270	1
scaffold_2	alternate_exon	18307271	18307364	-	asmbl_23791	none	STRG.2713.2,blat.proc3829887.chain_2539	2	STRG.2713.1,blat.proc3829887.chain_2540	2
scaffold_13	skipped_exon	6884220	6885660	+	asmbl_10979	none	STRG.15964.2,blat.proc3829879.chain_657	2	STRG.15964.1,STRG.15964.3,blat.proc3829879.chain_655,blat.proc3829879.chain_656	4
scaffold_27	starts_in_intron	4506293	4506293	+	asmbl_36253	none	Trinity_GG_15993_c0_g1_i2,blat.proc3829885.chain_2005	2	STRG.28882.2	1
scaffold_11	skipped_exon	3762846	3764045	+	asmbl_5421	none	STRG.13487.3	1	STRG.13487.1,STRG.13487.2,blat.proc3829877.chain_1919	3
scaffold_6	alt_acceptor	17798851	17798852	-	asmbl_49132	none	STRG.8455.1,blat.proc3829891.chain_712	2	STRG.8455.2,blat.proc3829891.chain_711	2
scaffold_1	retained_exon	11620012	11620143	-	asmbl_652	none	STRG.768.1,blat.proc3829887.chain_658	2	STRG.768.2,blat.proc3829887.chain_659	2
scaffold_3	retained_exon	14778497	14778710	-	asmbl_39369,asmbl_39371,asmbl_39372,asmbl_39373	none	STRG.3820.1,STRG.3820.2,STRG.3820.3,STRG.3820.4,blat.proc3829887.chain_3626,blat.proc3829887.chain_3628,blat.proc3829887.chain_3630	7	blat.proc3829887.chain_3629	1
scaffold_5	spliced_intron	7710260	7710370	-	asmbl_45572	none	STRG.6143.2,blat.proc3829889.chain_2235	2	STRG.6143.1,blat.proc3829889.chain_2233,blat.proc3829889.chain_2234	3
scaffold_24	alt_acceptor	7934981	7934982	+	asmbl_32409	none	STRG.26832.1,Trinity_GG_14835_c2_g1_i2,blat.proc3829883.chain_3722	3	STRG.26832.2	1
scaffold_1	alt_donor	12334523	12334524	-	asmbl_722	none	blat.proc3829887.chain_739	1	blat.proc3829887.chain_735,blat.proc3829887.chain_736	2
scaffold_7	ends_in_intron	10269213	10269213	-	asmbl_49926	none	Trinity_GG_22214_c1_g1_i1,blat.proc3829891.chain_1466	2	STRG.9189.1,STRG.9189.2,blat.proc3829891.chain_1463,blat.proc3829891.chain_1465	4
scaffold_9	alt_donor	13313435	13313436	-	asmbl_55399	none	STRG.11621.2	1	STRG.11621.1,Trinity_GG_23425_c0_g1_i2,blat.proc3829891.chain_3743,blat.proc3829891.chain_3744	4
scaffold_5	alternate_exon	10143115	10143166	-	asmbl_45694	none	STRG.6301.1	1	Trinity_GG_20561_c0_g1_i2,blat.proc3829889.chain_2384	2
scaffold_14	alt_acceptor	15946938	15946939	+	asmbl_12633	none	STRG.17824.2,blat.proc3829879.chain_2528	2	STRG.17824.1,STRG.17824.3	2
scaffold_4	spliced_intron	6672886	6673441	-	asmbl_41433,asmbl_41434	none	STRG.4523.1,STRG.4523.3,blat.proc3829889.chain_691,blat.proc3829889.chain_692	4	STRG.4523.2,Trinity_GG_19579_c0_g1_i1,blat.proc3829889.chain_690	3
scaffold_26	alt_acceptor	9834927	9834928	-	asmbl_35063	none	STRG.28503.1,blat.proc3829901.chain_1556	2	STRG.28503.2,STRG.28503.3,blat.proc3829901.chain_1557	3
scaffold_13	starts_in_intron	6619516	6619516	-	asmbl_9767	none	blat.proc3829895.chain_727	1	STRG.15949.1	1
scaffold_14	retained_intron	5597398	5598031	+	asmbl_12009	none	blat.proc3829879.chain_1781	1	STRG.17026.1,blat.proc3829879.chain_1782	2
scaffold_7	alternate_exon	2486548	2490550	+	asmbl_50524,asmbl_50525	none	STRG.8671.1,STRG.8671.2,Trinity_GG_4744_c0_g1_i1,blat.proc3829875.chain_1063	4	Trinity_GG_4744_c1_g1_i3,blat.proc3829875.chain_1064	2
scaffold_10	retained_intron	6075638	6075745	-	asmbl_3340,asmbl_3341,asmbl_3344,asmbl_3346,asmbl_3347,asmbl_3348,asmbl_3349	none	STRG.12437.1,STRG.12437.2,STRG.12437.3,blat.proc3829893.chain_918,blat.proc3829893.chain_919,blat.proc3829893.chain_923,blat.proc3829893.chain_924	7	STRG.12437.5,blat.proc3829893.chain_921,blat.proc3829893.chain_922	3
scaffold_17	spliced_intron	14040941	14041125	+	asmbl_18495	none	STRG.20863.2	1	STRG.20863.1,blat.proc3829881.chain_1718	2
scaffold_22	ends_in_intron	323189	323189	+	asmbl_29138	none	blat.proc3829883.chain_1730	1	STRG.24670.1,blat.proc3829883.chain_1728,blat.proc3829883.chain_1731	3
scaffold_4	spliced_intron	9343784	9343976	-	asmbl_41546,asmbl_41547	none	STRG.4740.1,blat.proc3829889.chain_860,blat.proc3829889.chain_861	3	blat.proc3829889.chain_862,blat.proc3829889.chain_863	2
scaffold_25	ends_in_intron	5810354	5810354	-	asmbl_34264	none	blat.proc3829901.chain_771	1	STRG.27454.1,blat.proc3829901.chain_772,blat.proc3829901.chain_773	3
scaffold_22	spliced_intron	4408885	4409056	-	asmbl_30022	none	STRG.24849.1,blat.proc3829899.chain_1902	2	Trinity_GG_30859_c0_g1_i2,blat.proc3829899.chain_1903	2
scaffold_11	retained_intron	11641334	11641468	+	asmbl_5949,asmbl_5952,asmbl_5953	none	blat.proc3829877.chain_2570,blat.proc3829877.chain_2573,blat.proc3829877.chain_2574	3	STRG.14080.1,blat.proc3829877.chain_2568,blat.proc3829877.chain_2572	3
scaffold_6	starts_in_intron	16051306	16051306	+	asmbl_47624	none	Trinity_GG_4569_c0_g1_i1,blat.proc3829875.chain_706	2	STRG.8338.1,blat.proc3829875.chain_705	2
scaffold_20	skipped_exon	11480461	11483459	+	asmbl_26208	none	STRG.23639.3,blat.proc3829883.chain_715	2	STRG.23639.2,Trinity_GG_13053_c0_g1_i4,blat.proc3829883.chain_717	3
scaffold_9	spliced_intron	11842724	11842821	-	asmbl_55293,asmbl_55294,asmbl_55296,asmbl_55299	none	STRG.11491.1,blat.proc3829891.chain_3619,blat.proc3829891.chain_3623,blat.proc3829891.chain_3624,blat.proc3829891.chain_3625,blat.proc3829891.chain_3626	6	blat.proc3829891.chain_3620,blat.proc3829891.chain_3622	2
scaffold_4	retained_intron	1441879	1442446	-	asmbl_41119	none	STRG.4175.1,Trinity_GG_19353_c0_g2_i1,blat.proc3829889.chain_308	3	STRG.4175.2	1
scaffold_14	starts_in_intron	5951183	5951183	+	asmbl_12023	none	blat.proc3829879.chain_1788	1	STRG.17044.1,blat.proc3829879.chain_1787	2
scaffold_26	retained_exon	3179305	3179382	-	asmbl_34749	none	STRG.27993.2,blat.proc3829901.chain_1223	2	STRG.27993.1,blat.proc3829901.chain_1222	2
scaffold_20	alt_acceptor	8208343	8208344	-	asmbl_26897	none	blat.proc3829899.chain_358	1	STRG.23356.1	1
scaffold_19	alt_donor	726656	726657	+	asmbl_22007	none	STRG.21851.1	1	STRG.21851.2,STRG.21851.3,STRG.21851.4	3
scaffold_26	alternate_exon	423394	423751	+	asmbl_35209	none	STRG.27850.2,blat.proc3829885.chain_855	2	STRG.27850.1,blat.proc3829885.chain_852,blat.proc3829885.chain_853,blat.proc3829885.chain_854	4
scaffold_9	alternate_exon	14818824	14820315	-	asmbl_55461,asmbl_55466,asmbl_55468	none	STRG.11693.1,STRG.11693.2,blat.proc3829893.chain_10,blat.proc3829893.chain_8	4	STRG.11693.6	1
scaffold_18	retained_intron	8912486	8913581	-	asmbl_20076,asmbl_20079,asmbl_20084	none	STRG.21550.4,STRG.21550.6,blat.proc3829897.chain_2395	3	STRG.21550.2	1
scaffold_16	alt_acceptor	291473	291474	+	asmbl_16805,asmbl_16809	none	STRG.19012.3,blat.proc3829879.chain_3639	2	STRG.19012.1,STRG.19012.2,Trinity_GG_10430_c0_g1_i2,Trinity_GG_10430_c0_g1_i4,blat.proc3829879.chain_3638,blat.proc3829879.chain_3641,blat.proc3829879.chain_3642	7
scaffold_1	spliced_intron	10460558	10460718	-	asmbl_601	none	STRG.682.1,blat.proc3829887.chain_627	2	Trinity_GG_17402_c0_g1_i1,blat.proc3829887.chain_626	2
scaffold_2	alt_donor	7880804	7880805	+	asmbl_24617,asmbl_24623,asmbl_24624	none	STRG.2088.1,Trinity_GG_1183_c0_g1_i10,Trinity_GG_1183_c0_g1_i16,Trinity_GG_1183_c0_g1_i4,blat.proc3829871.chain_2178,blat.proc3829871.chain_2182,blat.proc3829871.chain_2185	7	Trinity_GG_1183_c0_g1_i2,blat.proc3829871.chain_2181	2
scaffold_17	alt_acceptor	4693419	4693420	+	asmbl_17919	none	STRG.20195.2	1	STRG.20195.1	1
scaffold_2	retained_intron	10640331	10640648	-	asmbl_23440,asmbl_23443,asmbl_23444	none	STRG.2225.1,blat.proc3829887.chain_2056,blat.proc3829887.chain_2057,blat.proc3829887.chain_2058	4	STRG.2225.2,blat.proc3829887.chain_2055	2
scaffold_15	alt_donor	14323985	14323986	-	asmbl_15734	none	Trinity_GG_27599_c0_g1_i1,blat.proc3829895.chain_3605	2	Trinity_GG_27599_c0_g1_i7,blat.proc3829895.chain_3600	2
scaffold_12	alt_acceptor	6420532	6420533	+	asmbl_8646	none	blat.proc3829877.chain_3202	1	STRG.14730.1,STRG.14730.2,STRG.14730.3,STRG.14730.4,Trinity_GG_8129_c0_g1_i5,blat.proc3829877.chain_3201,blat.proc3829877.chain_3203,blat.proc3829877.chain_3204,blat.proc3829877.chain_3205,blat.proc3829877.chain_3206	10
scaffold_22	ends_in_intron	6130989	6130989	+	asmbl_29388	none	STRG.24955.6	1	STRG.24955.3,STRG.24955.7,blat.proc3829883.chain_2007,blat.proc3829883.chain_2009,blat.proc3829883.chain_2010	5
scaffold_1	alt_acceptor	849971	849972	+	asmbl_1415	none	STRG.41.1,Trinity_GG_29_c0_g1_i2,blat.proc3829871.chain_52	3	STRG.41.5,Trinity_GG_29_c0_g1_i3,blat.proc3829871.chain_51	3
scaffold_21	starts_in_intron	844564	844564	-	asmbl_27391	none	blat.proc3829899.chain_713	1	STRG.23764.1,blat.proc3829899.chain_712	2
scaffold_28	retained_intron	9641239	9641325	+	asmbl_38493	none	STRG.29969.2	1	STRG.29969.1,Trinity_GG_16597_c0_g1_i2,Trinity_GG_34129_c0_g1_i1,blat.proc3829885.chain_3052,blat.proc3829901.chain_3544	5
scaffold_25	retained_intron	6066072	6066195	-	asmbl_34293	none	blat.proc3829901.chain_719	1	STRG.27475.1,blat.proc3829901.chain_716,blat.proc3829901.chain_718,blat.proc3829901.chain_721,blat.proc3829901.chain_722	5
scaffold_4	starts_in_intron	4093817	4093817	+	asmbl_42554	none	STRG.4313.5	1	STRG.4313.1,STRG.4313.2,STRG.4313.3,STRG.4313.4,Trinity_GG_2386_c0_g1_i14,blat.proc3829873.chain_633,blat.proc3829873.chain_635,blat.proc3829873.chain_636,blat.proc3829873.chain_638,blat.proc3829873.chain_640	10
scaffold_22	starts_in_intron	10260244	10260244	-	asmbl_30361	none	blat.proc3829899.chain_2434	1	STRG.25360.1,blat.proc3829899.chain_2433	2
scaffold_25	alternate_exon	3687916	3688060	+	asmbl_33451	none	STRG.27297.3	1	STRG.27297.1,blat.proc3829885.chain_327,blat.proc3829885.chain_328	3
scaffold_9	alternate_exon	4211000	4211097	+	asmbl_53927	none	STRG.11014.2	1	STRG.11014.3	1
scaffold_14	retained_intron	12628130	12628260	-	asmbl_13567	none	blat.proc3829895.chain_2327	1	STRG.17566.1,STRG.17566.2,blat.proc3829895.chain_2326,blat.proc3829895.chain_2329,blat.proc3829895.chain_2330,blat.proc3829895.chain_2331,blat.proc3829895.chain_2332	7
scaffold_26	alt_donor	4455623	4455624	+	asmbl_35435	none	STRG.28147.1,blat.proc3829885.chain_1137	2	STRG.28147.2,blat.proc3829885.chain_1136	2
scaffold_1	retained_intron	21665391	21665422	-	asmbl_1212	none	STRG.1454.1,Trinity_GG_17797_c0_g1_i1,blat.proc3829887.chain_1318	3	STRG.1454.2,blat.proc3829887.chain_1319	2
scaffold_9	alt_acceptor	11130886	11130887	+	asmbl_54320	none	STRG.11416.1,Trinity_GG_6376_c0_g1_i1,blat.proc3829877.chain_216	3	STRG.11416.2	1
scaffold_11	retained_intron	11785553	11785678	+	asmbl_5961	none	STRG.14087.1	1	STRG.14087.4,STRG.14087.5	2
scaffold_10	retained_intron	17325221	17326440	-	asmbl_3954	none	STRG.13169.3,blat.proc3829893.chain_1572	2	STRG.13169.2,blat.proc3829893.chain_1574	2
scaffold_14	retained_intron	3244204	3244521	+	asmbl_11902,asmbl_11905	none	STRG.16901.2,Trinity_GG_9263_c0_g1_i8,blat.proc3829879.chain_1551,blat.proc3829879.chain_1554	4	STRG.16901.1,blat.proc3829879.chain_1549,blat.proc3829879.chain_1553,blat.proc3829879.chain_1555	4
scaffold_14	retained_intron	15247760	15247780	+	asmbl_12567	none	blat.proc3829879.chain_2429	1	blat.proc3829879.chain_2431	1
scaffold_15	retained_intron	13725067	13725143	+	asmbl_14597	none	STRG.18795.1,Trinity_GG_10321_c0_g1_i3,blat.proc3829879.chain_3393	3	STRG.18795.2	1
scaffold_2	spliced_intron	13330650	13331324	+	asmbl_24862,asmbl_24864	none	STRG.2342.1,STRG.2342.5,blat.proc3829871.chain_2472,blat.proc3829871.chain_2473	4	STRG.2342.2,STRG.2342.3,blat.proc3829871.chain_2471	3
scaffold_17	starts_in_intron	9699280	9699280	+	asmbl_18251	none	blat.proc3829881.chain_1407	1	STRG.20577.1,Trinity_GG_11279_c0_g1_i3,blat.proc3829881.chain_1406	3
scaffold_9	retained_intron	9597034	9597966	-	asmbl_55175,asmbl_55176	none	STRG.11315.2,STRG.11315.3,Trinity_GG_23261_c0_g1_i3,blat.proc3829891.chain_3426	4	STRG.11315.1,Trinity_GG_23261_c0_g1_i1,blat.proc3829891.chain_3425	3
scaffold_7	retained_intron	12364305	12364430	-	asmbl_50012	none	blat.proc3829891.chain_1575	1	STRG.9323.1	1
scaffold_18	starts_in_intron	5788132	5788132	+	asmbl_20636	none	Trinity_GG_11752_c0_g1_i3,Trinity_GG_11752_c0_g1_i5,blat.proc3829881.chain_2251,blat.proc3829881.chain_2254	4	STRG.21318.2,blat.proc3829881.chain_2250	2
scaffold_3	skipped_exon	7956219	7956673	-	asmbl_38957,asmbl_38959	none	STRG.3388.2,blat.proc3829887.chain_3109,blat.proc3829887.chain_3111	3	STRG.3388.1,blat.proc3829887.chain_3108,blat.proc3829887.chain_3112	3
scaffold_1	alternate_exon	920242	921971	+	asmbl_1436	none	STRG.48.1,Trinity_GG_8_c0_g1_i5,blat.proc3829871.chain_18	3	STRG.48.3,blat.proc3829871.chain_15	2
scaffold_3	starts_in_intron	10940387	10940387	+	asmbl_40276	none	Trinity_GG_1994_c0_g1_i3,blat.proc3829871.chain_3703	2	STRG.3535.1,STRG.3535.2,blat.proc3829871.chain_3701,blat.proc3829871.chain_3702	4
scaffold_20	alternate_exon	1569691	1569729	+	asmbl_25582	none	STRG.22871.1,blat.proc3829881.chain_3698	2	STRG.22871.2	1
scaffold_11	retained_intron	8099759	8099979	+	asmbl_5690,asmbl_5691	none	Trinity_GG_7614_c0_g1_i2,Trinity_GG_7614_c0_g1_i5,blat.proc3829877.chain_2292,blat.proc3829877.chain_2297	4	STRG.13810.1,STRG.13810.2,STRG.13810.3,STRG.13810.4,Trinity_GG_7614_c0_g1_i1,Trinity_GG_7614_c0_g1_i3,Trinity_GG_7614_c0_g1_i4,Trinity_GG_7614_c0_g1_i6,blat.proc3829877.chain_2293,blat.proc3829877.chain_2294,blat.proc3829877.chain_2295,blat.proc3829877.chain_2296	12
scaffold_21	spliced_intron	7503362	7503507	-	asmbl_27849,asmbl_27850,asmbl_27852,asmbl_27853	none	STRG.24269.1,STRG.24269.2,STRG.24269.3,blat.proc3829899.chain_1354,blat.proc3829899.chain_1355,blat.proc3829899.chain_1357	6	blat.proc3829899.chain_1356	1
scaffold_18	spliced_intron	7661288	7661516	+	asmbl_20795,asmbl_20796	none	STRG.21461.1,STRG.21461.3	2	STRG.21461.2,STRG.21461.4	2
scaffold_4	alt_donor	4550867	4550868	+	asmbl_42621	none	STRG.4367.1	1	STRG.4367.2,STRG.4367.3,blat.proc3829873.chain_736,blat.proc3829873.chain_737,blat.proc3829873.chain_738	5
scaffold_6	starts_in_intron	3806913	3806913	+	asmbl_46810	none	Trinity_GG_4055_c0_g1_i6,blat.proc3829873.chain_3528	2	STRG.7379.2,STRG.7379.4,STRG.7379.5	3
scaffold_4	retained_intron	18296094	18296125	+	asmbl_43440,asmbl_43441	none	STRG.5429.1,STRG.5429.2,Trinity_GG_2984_c1_g1_i1,blat.proc3829873.chain_1652	4	STRG.5429.3	1
scaffold_23	spliced_intron	10131332	10131437	-	asmbl_31840	none	STRG.26199.2	1	STRG.26199.1,blat.proc3829899.chain_3269	2
scaffold_27	retained_intron	9968387	9968472	+	asmbl_36508,asmbl_36509	none	STRG.29210.1,STRG.29210.3,blat.proc3829885.chain_2349	3	STRG.29210.2,blat.proc3829885.chain_2348	2
scaffold_6	alt_acceptor	11464844	11464845	-	asmbl_48691,asmbl_48693	none	STRG.7935.1,blat.proc3829891.chain_180,blat.proc3829891.chain_181	3	blat.proc3829891.chain_179	1
scaffold_14	starts_in_intron	7495820	7495820	+	asmbl_12147	none	Trinity_GG_9413_c1_g1_i1,blat.proc3829879.chain_1837	2	STRG.17177.1,STRG.17177.2,STRG.17177.4,Trinity_GG_9413_c1_g1_i2,blat.proc3829879.chain_1836,blat.proc3829879.chain_1838	6
scaffold_15	retained_intron	15188079	15188653	+	asmbl_14674,asmbl_14680,asmbl_14686,asmbl_14689	none	blat.proc3829879.chain_3472,blat.proc3829879.chain_3478,blat.proc3829879.chain_3480,blat.proc3829879.chain_3485,blat.proc3829879.chain_3486	5	STRG.18906.2,STRG.18906.3,blat.proc3829879.chain_3471,blat.proc3829879.chain_3475,blat.proc3829879.chain_3476,blat.proc3829879.chain_3481	6
scaffold_7	ends_in_intron	15270505	15270505	+	asmbl_51310	none	blat.proc3829875.chain_1983	1	STRG.9532.1,STRG.9532.2,STRG.9532.4,STRG.9532.5,blat.proc3829875.chain_1981,blat.proc3829875.chain_1984,blat.proc3829875.chain_1985,blat.proc3829875.chain_1986,blat.proc3829875.chain_1987	9
scaffold_27	spliced_intron	315477	315621	-	asmbl_36615,asmbl_36616	none	STRG.28538.2,STRG.28538.3	2	STRG.28538.1,blat.proc3829901.chain_1673	2
scaffold_25	skipped_exon	8668191	8669550	+	asmbl_33735	none	STRG.27672.1,blat.proc3829885.chain_683	2	STRG.27672.3,blat.proc3829885.chain_684	2
scaffold_11	alt_acceptor	334282	334283	+	asmbl_5245,asmbl_5246	none	STRG.13256.1,STRG.13256.3,blat.proc3829877.chain_1777	3	STRG.13256.2,blat.proc3829877.chain_1774	2
scaffold_27	starts_in_intron	6601030	6601030	-	asmbl_37021	none	blat.proc3829901.chain_2176	1	STRG.29010.1,blat.proc3829901.chain_2175	2
scaffold_4	starts_in_intron	19355262	19355262	-	asmbl_42192	none	blat.proc3829889.chain_1605	1	STRG.5528.1,blat.proc3829889.chain_1609,blat.proc3829889.chain_1612,blat.proc3829889.chain_1613,blat.proc3829889.chain_1615,blat.proc3829889.chain_1617	6
scaffold_11	spliced_intron	5868618	5868758	-	asmbl_6661	none	STRG.13641.2,blat.proc3829893.chain_2103	2	STRG.13641.3,blat.proc3829893.chain_2102,blat.proc3829893.chain_2104	3
scaffold_21	spliced_intron	5171404	5171760	-	asmbl_27646,asmbl_27649,asmbl_27651	none	STRG.24038.1,blat.proc3829899.chain_1128,blat.proc3829899.chain_1129,blat.proc3829899.chain_1134	4	blat.proc3829899.chain_1132	1
scaffold_9	starts_in_intron	5553655	5553655	-	asmbl_54974,asmbl_54975	none	STRG.11124.3,blat.proc3829891.chain_3226	2	STRG.11124.1,blat.proc3829891.chain_3225,blat.proc3829891.chain_3228	3
scaffold_17	alt_donor	14394653	14394654	+	asmbl_18522	none	STRG.20909.2,blat.proc3829881.chain_1744	2	STRG.20909.1,STRG.20909.3,blat.proc3829881.chain_1741,blat.proc3829881.chain_1742	4
scaffold_21	retained_exon	5774120	5774263	-	asmbl_27723	none	STRG.24099.3	1	STRG.24099.1,blat.proc3829899.chain_1196,blat.proc3829899.chain_1198,blat.proc3829899.chain_1200	4
scaffold_12	skipped_exon	15678894	15680570	-	asmbl_8233	none	STRG.15344.2,blat.proc3829895.chain_20	2	STRG.15344.1,STRG.15344.3,STRG.15344.4,STRG.15344.5,blat.proc3829895.chain_19,blat.proc3829895.chain_21,blat.proc3829895.chain_22	7
scaffold_21	alternate_exon	416663	416756	-	asmbl_27348	none	STRG.23721.1,Trinity_GG_30222_c0_g1_i2,blat.proc3829899.chain_750	3	STRG.23721.2,Trinity_GG_30222_c0_g1_i1,blat.proc3829899.chain_751	3
scaffold_8	alt_acceptor	1801775	1801776	-	asmbl_52698	none	STRG.9770.1	1	STRG.9770.2	1
scaffold_12	alt_donor	9234416	9234417	-	asmbl_7787,asmbl_7788,asmbl_7789,asmbl_7791,asmbl_7792,asmbl_7793,asmbl_7795,asmbl_7796,asmbl_7798	none	STRG.14912.4,STRG.14912.5,STRG.14912.6,STRG.14912.8,blat.proc3829893.chain_3298,blat.proc3829893.chain_3300,blat.proc3829893.chain_3301,blat.proc3829893.chain_3304,blat.proc3829893.chain_3305,blat.proc3829893.chain_3307	10	STRG.14912.2,STRG.14912.3,STRG.14912.7	3
scaffold_20	starts_in_intron	11700575	11700575	+	asmbl_26243	none	Trinity_GG_13101_c0_g1_i2,blat.proc3829883.chain_803	2	STRG.23666.1,blat.proc3829883.chain_804	2
scaffold_9	ends_in_intron	5327617	5327617	-	asmbl_54967	none	Trinity_GG_23176_c0_g1_i1,blat.proc3829891.chain_3274	2	STRG.11097.1,blat.proc3829891.chain_3275	2
scaffold_10	spliced_intron	922305	922681	+	asmbl_4159,asmbl_4162	none	STRG.11958.1,blat.proc3829877.chain_642,blat.proc3829877.chain_643,blat.proc3829877.chain_644	4	blat.proc3829877.chain_645	1
scaffold_10	retained_intron	12895228	12895356	-	asmbl_3744	none	blat.proc3829893.chain_1337	1	STRG.12877.1,blat.proc3829893.chain_1336,blat.proc3829893.chain_1339	3
scaffold_1	spliced_intron	20498696	20498844	-	asmbl_1183	none	blat.proc3829887.chain_1280	1	STRG.1401.1,blat.proc3829887.chain_1281	2
scaffold_7	ends_in_intron	12703077	12703077	+	asmbl_51171	none	STRG.9374.1,blat.proc3829875.chain_1826	2	STRG.9374.2	1
scaffold_17	retained_intron	9531820	9532391	+	asmbl_18235,asmbl_18236	none	blat.proc3829881.chain_1349,blat.proc3829881.chain_1353	2	STRG.20566.1,STRG.20566.2,Trinity_GG_11250_c0_g1_i4,Trinity_GG_11250_c0_g1_i7,blat.proc3829881.chain_1350,blat.proc3829881.chain_1352	6
scaffold_20	alt_acceptor	429447	429448	+	asmbl_25508	none	STRG.22729.4	1	STRG.22729.1,STRG.22729.2,STRG.22729.5,Trinity_GG_12572_c0_g1_i1,Trinity_GG_33839_c0_g1_i1,blat.proc3829881.chain_3689	6
scaffold_23	starts_in_intron	3571405	3571405	+	asmbl_30745,asmbl_30746,asmbl_30747	none	Trinity_GG_14182_c0_g1_i3,Trinity_GG_14182_c0_g1_i4,blat.proc3829883.chain_2594,blat.proc3829883.chain_2595,blat.proc3829883.chain_2596,blat.proc3829883.chain_2597	6	STRG.25757.2	1
scaffold_24	ends_in_intron	5331914	5331914	-	asmbl_32890	none	blat.proc3829899.chain_3681	1	STRG.26605.1,blat.proc3829899.chain_3679,blat.proc3829899.chain_3680,blat.proc3829899.chain_3682	4
scaffold_3	skipped_exon	11977944	11980935	+	asmbl_40338	none	STRG.3621.3	1	STRG.3621.1,STRG.3621.2,Trinity_GG_2035_c0_g1_i1,Trinity_GG_2035_c0_g1_i2,blat.proc3829873.chain_20,blat.proc3829873.chain_21	6
scaffold_1	retained_intron	22324113	22324192	-	asmbl_1234	none	Trinity_GG_17820_c0_g1_i1,blat.proc3829887.chain_1346	2	STRG.1484.1,Trinity_GG_17820_c0_g1_i2,blat.proc3829887.chain_1347	3
scaffold_22	alt_acceptor	10682062	10682063	-	asmbl_30386	none	STRG.25391.2	1	STRG.25391.1	1
scaffold_14	alternate_exon	14386694	14386977	+	asmbl_12530	none	STRG.17683.3,blat.proc3829879.chain_2303	2	STRG.17683.2	1
scaffold_1	spliced_intron	14350452	14350634	-	asmbl_899,asmbl_900,asmbl_902	none	STRG.1030.1,STRG.1030.2,blat.proc3829887.chain_924,blat.proc3829887.chain_925,blat.proc3829887.chain_927	5	blat.proc3829887.chain_928	1
scaffold_13	spliced_intron	15244277	15244789	-	asmbl_10198	none	STRG.16557.1,blat.proc3829895.chain_1214,blat.proc3829895.chain_1222	3	blat.proc3829895.chain_1213	1
scaffold_4	retained_intron	17031495	17031641	+	asmbl_43364	none	blat.proc3829873.chain_1534	1	STRG.5305.2,STRG.5305.3,blat.proc3829873.chain_1531	3
scaffold_13	retained_exon	15363483	15363547	+	asmbl_11475	none	STRG.16566.1,Trinity_GG_9120_c0_g1_i4,blat.proc3829879.chain_1299	3	Trinity_GG_9120_c0_g1_i1,blat.proc3829879.chain_1300	2
scaffold_6	alt_donor	11011994	11011995	-	asmbl_48665	none	STRG.7909.2,blat.proc3829891.chain_198	2	STRG.7909.3,STRG.7909.4	2
scaffold_22	retained_exon	323133	323189	+	asmbl_29133,asmbl_29137	none	STRG.24670.3,blat.proc3829883.chain_1729	2	STRG.24670.1,blat.proc3829883.chain_1728,blat.proc3829883.chain_1731	3
scaffold_7	alt_donor	9744192	9744193	+	asmbl_50976	none	STRG.9156.1,blat.proc3829875.chain_1624	2	STRG.9156.2,blat.proc3829875.chain_1625	2
scaffold_7	alt_acceptor	15595252	15595253	+	asmbl_51330	none	STRG.9548.3	1	STRG.9548.2,Trinity_GG_5298_c0_g1_i1,blat.proc3829875.chain_1999	3
scaffold_18	retained_intron	7653749	7654074	+	asmbl_20789	none	Trinity_GG_11868_c1_g1_i1,blat.proc3829881.chain_2449	2	STRG.21455.1,Trinity_GG_11868_c1_g1_i2,blat.proc3829881.chain_2448	3
scaffold_39	alt_donor	34167	34168	-	asmbl_41022,asmbl_41025	none	STRG.30019.2,STRG.30019.3	2	STRG.30019.1,STRG.30019.4,blat.proc3829901.chain_3117	3
scaffold_1	spliced_intron	12689792	12689998	-	asmbl_752,asmbl_754	none	STRG.891.1,STRG.891.2,STRG.891.4,blat.proc3829887.chain_796	4	STRG.891.3,Trinity_GG_17484_c0_g1_i1,Trinity_GG_17484_c0_g1_i2,blat.proc3829887.chain_795,blat.proc3829887.chain_797	5
scaffold_27	skipped_exon	2814303	2815090	+	asmbl_36074,asmbl_36075,asmbl_36079,asmbl_36080	none	STRG.28742.1,STRG.28742.2,blat.proc3829885.chain_1799,blat.proc3829885.chain_1801,blat.proc3829885.chain_1802,blat.proc3829885.chain_1803	6	STRG.28742.3	1
scaffold_13	starts_in_intron	16163839	16163839	-	asmbl_10244	none	Trinity_GG_26286_c0_g1_i1	1	STRG.16645.1,blat.proc3829895.chain_1279	2
scaffold_8	alternate_exon	16227552	16227792	+	asmbl_52428	none	STRG.10606.1,Trinity_GG_5907_c0_g1_i2,blat.proc3829875.chain_3128	3	STRG.10606.2,Trinity_GG_5907_c0_g1_i6,blat.proc3829875.chain_3131	3
scaffold_19	retained_intron	12491455	12492152	+	asmbl_22615	none	STRG.22568.3,blat.proc3829881.chain_3534	2	STRG.22568.1,blat.proc3829881.chain_3536	2
scaffold_5	starts_in_intron	16793015	16793015	-	asmbl_46156	none	STRG.6861.1,blat.proc3829889.chain_2905	2	STRG.6861.2,STRG.6861.3,blat.proc3829889.chain_2904	3
scaffold_3	alt_donor	10631389	10631390	+	asmbl_40235,asmbl_40238,asmbl_40241	none	STRG.3509.1,STRG.3509.2,STRG.3509.3,blat.proc3829871.chain_3605,blat.proc3829871.chain_3608	5	blat.proc3829871.chain_3604,blat.proc3829871.chain_3606,blat.proc3829871.chain_3607,blat.proc3829871.chain_3609	4
scaffold_6	retained_intron	8164348	8164374	-	asmbl_48469	none	STRG.7689.2	1	STRG.7689.1	1
scaffold_19	retained_intron	12207921	12208221	+	asmbl_22568	none	STRG.22538.2,Trinity_GG_12469_c0_g1_i2,Trinity_GG_12469_c0_g1_i3,blat.proc3829881.chain_3483,blat.proc3829881.chain_3485	5	STRG.22538.3,Trinity_GG_12469_c0_g1_i5,blat.proc3829881.chain_3484	3
scaffold_21	starts_in_intron	4257149	4257149	-	asmbl_27597	none	blat.proc3829899.chain_1050	1	STRG.23990.2	1
scaffold_7	spliced_intron	13196688	13197490	-	asmbl_50116	none	blat.proc3829891.chain_1694	1	STRG.9418.3,Trinity_GG_22315_c0_g1_i2,blat.proc3829891.chain_1696,blat.proc3829891.chain_1697,blat.proc3829891.chain_1698	5
scaffold_8	retained_intron	11848560	11849714	+	asmbl_52266,asmbl_52284	none	STRG.10382.2,Trinity_GG_5824_c2_g1_i1,blat.proc3829875.chain_2983	3	blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970	3
scaffold_10	spliced_intron	3757724	3757878	-	asmbl_3133	none	STRG.12200.4	1	STRG.12200.1,STRG.12200.2	2
scaffold_27	retained_intron	381928	382157	-	asmbl_36634	none	STRG.28547.3,blat.proc3829901.chain_1688	2	STRG.28547.1,blat.proc3829901.chain_1687	2
scaffold_21	spliced_intron	256225	256484	-	asmbl_27313,asmbl_27314,asmbl_27315,asmbl_27318,asmbl_27319,asmbl_27320,asmbl_27321,asmbl_27322,asmbl_27323	none	STRG.23718.1,STRG.23718.2,STRG.23718.3,STRG.23718.4,STRG.23718.5,STRG.23718.6,STRG.23718.7,Trinity_GG_30232_c0_g1_i4,blat.proc3829899.chain_782,blat.proc3829899.chain_783,blat.proc3829899.chain_785,blat.proc3829899.chain_786,blat.proc3829899.chain_787,blat.proc3829899.chain_788,blat.proc3829899.chain_790	15	blat.proc3829899.chain_791,blat.proc3829899.chain_794	2
scaffold_25	starts_in_intron	4872796	4872796	-	asmbl_34215	none	blat.proc3829901.chain_647	1	STRG.27404.1,STRG.27404.2,Trinity_GG_32325_c0_g1_i2,blat.proc3829901.chain_645,blat.proc3829901.chain_646	5
scaffold_8	retained_exon	12690957	12690998	+	asmbl_52318,asmbl_52321	none	STRG.10436.2,blat.proc3829875.chain_2946	2	STRG.10436.1,blat.proc3829875.chain_2945,blat.proc3829875.chain_2949	3
scaffold_13	ends_in_intron	8807835	8807835	-	asmbl_9940	none	Trinity_GG_26094_c0_g1_i10,blat.proc3829895.chain_937	2	blat.proc3829895.chain_940,blat.proc3829895.chain_941,blat.proc3829895.chain_943	3
scaffold_11	retained_intron	2500321	2500474	-	asmbl_6487	none	Trinity_GG_24528_c0_g1_i1,blat.proc3829893.chain_1887	2	STRG.13391.1,blat.proc3829893.chain_1888	2
scaffold_22	alt_acceptor	6956327	6956328	-	asmbl_30119	none	STRG.25002.1	1	STRG.25002.2,STRG.25002.3	2
scaffold_3	retained_intron	12773155	12773414	+	asmbl_40369	none	STRG.3666.1,Trinity_GG_2047_c0_g1_i2,blat.proc3829873.chain_48	3	STRG.3666.2,Trinity_GG_2047_c0_g1_i3,blat.proc3829873.chain_50	3
scaffold_17	retained_intron	10050378	10050476	+	asmbl_18287,asmbl_18288,asmbl_18289	none	STRG.20609.2,Trinity_GG_11293_c0_g1_i5,blat.proc3829881.chain_1429,blat.proc3829881.chain_1430,blat.proc3829881.chain_1432	5	STRG.20609.3	1
scaffold_15	retained_intron	12421730	12421933	+	asmbl_14506,asmbl_14507	none	blat.proc3829879.chain_3272,blat.proc3829879.chain_3273	2	STRG.18687.1,blat.proc3829879.chain_3268,blat.proc3829879.chain_3270,blat.proc3829879.chain_3271	4
scaffold_9	alt_acceptor	13891261	13891262	-	asmbl_55416,asmbl_55417	none	STRG.11643.1,STRG.11643.2,blat.proc3829893.chain_14	3	STRG.11643.3	1
scaffold_14	starts_in_intron	7295451	7295451	+	asmbl_12128,asmbl_12129	none	STRG.17153.3,blat.proc3829879.chain_1854	2	STRG.17153.1,STRG.17153.2,blat.proc3829879.chain_1852,blat.proc3829879.chain_1853,blat.proc3829879.chain_1855	5
scaffold_14	alt_acceptor	11247863	11247864	-	asmbl_13444,asmbl_13448	none	STRG.17444.1,blat.proc3829895.chain_2125,blat.proc3829895.chain_2126	3	STRG.17444.3,STRG.17444.4	2
scaffold_21	retained_intron	1861553	1861668	-	asmbl_27451	none	blat.proc3829899.chain_878	1	STRG.23813.1,blat.proc3829899.chain_879	2
scaffold_1	alternate_exon	20135133	20135190	-	asmbl_1173	none	STRG.1381.4	1	STRG.1381.1,STRG.1381.2,STRG.1381.3	3
scaffold_2	retained_exon	18709526	18709606	+	asmbl_25268,asmbl_25271	none	STRG.2748.1,Trinity_GG_1549_c1_g1_i2,blat.proc3829871.chain_2924,blat.proc3829871.chain_2925	4	STRG.2748.2,blat.proc3829871.chain_2923	2
scaffold_20	spliced_intron	1468562	1468884	-	asmbl_26504,asmbl_26505,asmbl_26506	none	STRG.22854.1,STRG.22854.3,blat.proc3829897.chain_3663,blat.proc3829897.chain_3664	4	STRG.22854.2,Trinity_GG_29782_c1_g1_i4,blat.proc3829897.chain_3662,blat.proc3829897.chain_3665	4
scaffold_5	retained_exon	6289561	6289649	+	asmbl_44079	none	Trinity_GG_3287_c0_g1_i1,blat.proc3829873.chain_2167	2	STRG.6032.2	1
scaffold_6	spliced_intron	6869228	6869357	+	asmbl_46950	none	STRG.7585.2,blat.proc3829873.chain_3677	2	STRG.7585.1,STRG.7585.3,blat.proc3829873.chain_3678,blat.proc3829873.chain_3679	4
scaffold_19	starts_in_intron	6446390	6446390	+	asmbl_22217	none	blat.proc3829881.chain_3033	1	STRG.22159.1	1
scaffold_4	alt_donor	14681999	14682000	-	asmbl_41824	none	STRG.5103.1	1	STRG.5103.2,STRG.5103.3	2
scaffold_4	retained_intron	5183708	5183825	-	asmbl_41298	none	STRG.4410.3,Trinity_GG_19483_c0_g1_i1,blat.proc3829889.chain_520	3	STRG.4410.1,STRG.4410.2,STRG.4410.4,blat.proc3829889.chain_521,blat.proc3829889.chain_523	5
scaffold_15	retained_intron	2564142	2564591	+	asmbl_14009	none	STRG.18036.4	1	STRG.18036.1,Trinity_GG_9908_c0_g1_i6	2
scaffold_10	retained_exon	7270930	7270986	+	asmbl_4551,asmbl_4552,asmbl_4553	none	STRG.12531.1,blat.proc3829877.chain_1100,blat.proc3829877.chain_1102,blat.proc3829877.chain_1105	4	STRG.12531.2,blat.proc3829877.chain_1103	2
scaffold_15	spliced_intron	4815601	4815751	-	asmbl_15170,asmbl_15171,asmbl_15172,asmbl_15174	none	STRG.18192.1,blat.proc3829895.chain_2916,blat.proc3829895.chain_2917,blat.proc3829895.chain_2918,blat.proc3829895.chain_2920	5	blat.proc3829895.chain_2919	1
scaffold_5	spliced_intron	17227119	17227597	+	asmbl_44810,asmbl_44812,asmbl_44813,asmbl_44814,asmbl_44815	none	STRG.6887.1,STRG.6887.2,blat.proc3829873.chain_3028,blat.proc3829873.chain_3029,blat.proc3829873.chain_3030,blat.proc3829873.chain_3031,blat.proc3829873.chain_3033	7	STRG.6887.3,Trinity_GG_3788_c0_g1_i1,Trinity_GG_3788_c3_g1_i1,blat.proc3829873.chain_3032,blat.proc3829873.chain_3037	5
scaffold_11	retained_intron	8073261	8073486	-	asmbl_6802,asmbl_6812	none	Trinity_GG_24711_c0_g1_i17,Trinity_GG_24711_c0_g1_i8,blat.proc3829893.chain_2204,blat.proc3829893.chain_2205	4	STRG.13802.1,STRG.13802.2,Trinity_GG_24711_c0_g1_i18,Trinity_GG_24711_c0_g1_i3,blat.proc3829893.chain_2197,blat.proc3829893.chain_2206,blat.proc3829893.chain_2209,blat.proc3829893.chain_2211	8
scaffold_7	spliced_intron	15270953	15271287	+	asmbl_51316,asmbl_51319	none	STRG.9532.1,blat.proc3829875.chain_1982	2	STRG.9532.3,blat.proc3829875.chain_1981,blat.proc3829875.chain_1986	3
scaffold_2	alternate_exon	4131883	4131909	+	asmbl_24358	none	Trinity_GG_1003_c0_g1_i2,blat.proc3829871.chain_1836	2	STRG.1855.1,blat.proc3829871.chain_1835	2
scaffold_1	retained_intron	10414454	10414944	-	asmbl_594	none	Trinity_GG_17393_c0_g2_i1,blat.proc3829887.chain_610	2	STRG.680.1,blat.proc3829887.chain_609	2
scaffold_15	retained_intron	14323219	14324365	-	asmbl_15736	none	Trinity_GG_27599_c0_g1_i11	1	Trinity_GG_27599_c0_g1_i7,blat.proc3829895.chain_3600,blat.proc3829895.chain_3603	3
scaffold_13	alternate_exon	14180164	14180246	-	asmbl_10141	none	STRG.16447.2,blat.proc3829895.chain_1184	2	STRG.16447.1,blat.proc3829895.chain_1185	2
scaffold_28	alternate_exon	5917320	5917411	+	asmbl_38306,asmbl_38307	none	STRG.29698.2,STRG.29698.3,Trinity_GG_16459_c0_g1_i1,Trinity_GG_16459_c0_g1_i3,blat.proc3829885.chain_2804,blat.proc3829885.chain_2805	6	STRG.29698.1	1
scaffold_10	starts_in_intron	14693864	14693864	+	asmbl_4923	none	Trinity_GG_7144_c0_g1_i6,blat.proc3829877.chain_1536	2	STRG.13008.1,STRG.13008.2,STRG.13008.3,blat.proc3829877.chain_1534,blat.proc3829877.chain_1537	5
scaffold_6	alternate_exon	11562674	11562878	+	asmbl_47288	none	STRG.7950.1,Trinity_GG_4346_c1_g1_i1,blat.proc3829875.chain_316	3	STRG.7949.1,Trinity_GG_4346_c0_g1_i2,blat.proc3829875.chain_315	3
scaffold_20	alternate_exon	7825500	7825964	-	asmbl_26852	none	blat.proc3829899.chain_346	1	STRG.23319.1,blat.proc3829899.chain_343	2
scaffold_12	starts_in_intron	16727959	16727959	-	asmbl_8282	none	Trinity_GG_25625_c0_g1_i2,blat.proc3829895.chain_92	2	STRG.15400.1,STRG.15400.2,Trinity_GG_25625_c0_g1_i1,Trinity_GG_25625_c0_g1_i5,blat.proc3829895.chain_93,blat.proc3829895.chain_94	6
scaffold_12	ends_in_intron	7662604	7662604	+	asmbl_8748	none	blat.proc3829877.chain_3341	1	STRG.14837.1,STRG.14837.2,blat.proc3829877.chain_3340,blat.proc3829877.chain_3342	4
scaffold_15	alt_acceptor	14513304	14513305	+	asmbl_14632	none	STRG.18853.2,blat.proc3829879.chain_3444	2	STRG.18853.1,STRG.18853.3,blat.proc3829879.chain_3442,blat.proc3829879.chain_3443	4
scaffold_28	starts_in_intron	5226907	5226907	-	asmbl_37580	none	blat.proc3829901.chain_2676	1	STRG.29650.1,STRG.29650.2,blat.proc3829901.chain_2671,blat.proc3829901.chain_2672,blat.proc3829901.chain_2673,blat.proc3829901.chain_2677	6
scaffold_20	skipped_exon	11480461	11482106	+	asmbl_26210,asmbl_26212,asmbl_26214	none	STRG.23639.2,STRG.23639.4,Trinity_GG_13053_c0_g1_i3,blat.proc3829883.chain_716	4	STRG.23639.1,Trinity_GG_13053_c0_g1_i2,Trinity_GG_13053_c0_g1_i4,blat.proc3829883.chain_714,blat.proc3829883.chain_717	5
scaffold_20	spliced_intron	10468860	10469189	-	asmbl_27027,asmbl_27028	none	STRG.23572.1,blat.proc3829899.chain_579,blat.proc3829899.chain_582	3	STRG.23572.2,blat.proc3829899.chain_580	2
scaffold_5	alternate_exon	11626638	11628817	-	asmbl_45799,asmbl_45800,asmbl_45801,asmbl_45802	none	blat.proc3829889.chain_2524,blat.proc3829889.chain_2525,blat.proc3829889.chain_2528,blat.proc3829889.chain_2529	4	blat.proc3829889.chain_2526	1
scaffold_12	ends_in_intron	9519563	9519563	-	asmbl_7804	none	blat.proc3829893.chain_3320	1	STRG.14916.1,blat.proc3829893.chain_3319	2
scaffold_3	alt_acceptor	7722710	7722711	-	asmbl_38936	none	STRG.3357.2,blat.proc3829887.chain_3159	2	STRG.3357.1	1
scaffold_18	spliced_intron	281385	282108	+	asmbl_20314	none	STRG.20973.1,blat.proc3829881.chain_1822	2	STRG.20973.2,Trinity_GG_11537_c1_g1_i1,blat.proc3829881.chain_1824	3
scaffold_18	alt_donor	2820946	2820947	+	asmbl_20456	none	blat.proc3829881.chain_1920	1	STRG.21133.1,STRG.21133.2,blat.proc3829881.chain_1915,blat.proc3829881.chain_1916	4
scaffold_2	alt_acceptor	16370287	16370288	+	asmbl_25162	none	blat.proc3829871.chain_2753	1	STRG.2569.1	1
scaffold_2	alt_donor	14369241	14369242	+	asmbl_24953	none	STRG.2434.1,blat.proc3829871.chain_2608	2	STRG.2434.2,blat.proc3829871.chain_2609	2
scaffold_1	retained_exon	9312965	9313033	+	asmbl_1973	none	STRG.625.1,blat.proc3829871.chain_686	2	STRG.625.2	1
scaffold_25	starts_in_intron	8273316	8273316	-	asmbl_34401	none	Trinity_GG_32496_c0_g1_i1,blat.proc3829901.chain_937	2	STRG.27643.1,blat.proc3829901.chain_936	2
scaffold_15	alt_donor	15409993	15409994	+	asmbl_14724,asmbl_14726	none	STRG.18921.4,STRG.18921.6	2	STRG.18921.1,STRG.18921.10,STRG.18921.5,STRG.18921.7,STRG.18921.8,blat.proc3829879.chain_3514,blat.proc3829879.chain_3518	7
scaffold_10	ends_in_intron	1175465	1175465	+	asmbl_4200,asmbl_4201	none	Trinity_GG_6677_c0_g2_i1,blat.proc3829877.chain_710,blat.proc3829877.chain_712	3	STRG.12000.2,blat.proc3829877.chain_708	2
scaffold_14	skipped_exon	6646360	6648368	-	asmbl_13125	none	STRG.17095.3	1	STRG.17095.1	1
scaffold_11	alternate_exon	15079736	15084448	-	asmbl_7158	none	STRG.14265.1,blat.proc3829893.chain_2698	2	STRG.14265.2	1
scaffold_9	alternate_exon	6439346	6439587	-	asmbl_55022	none	STRG.11169.3,blat.proc3829891.chain_3318	2	STRG.11169.2	1
scaffold_4	spliced_intron	3237335	3238369	-	asmbl_41167	none	STRG.4247.4	1	Trinity_GG_19386_c0_g1_i6,blat.proc3829889.chain_369	2
scaffold_3	alt_acceptor	7722744	7722745	-	asmbl_38937	none	STRG.3357.1	1	STRG.3357.2,blat.proc3829887.chain_3159	2
scaffold_9	ends_in_intron	15498416	15498416	-	asmbl_55500	none	STRG.11737.5,blat.proc3829893.chain_118	2	STRG.11737.1,STRG.11737.3,STRG.11737.4,blat.proc3829893.chain_116,blat.proc3829893.chain_117,blat.proc3829893.chain_119,blat.proc3829893.chain_120	7
scaffold_13	ends_in_intron	5705353	5705353	-	asmbl_9673	none	Trinity_GG_25916_c2_g1_i1,blat.proc3829895.chain_603	2	STRG.15859.1,STRG.15859.2,Trinity_GG_25916_c0_g1_i9,blat.proc3829895.chain_594,blat.proc3829895.chain_597,blat.proc3829895.chain_598	6
scaffold_26	starts_in_intron	9514230	9514230	+	asmbl_35760	none	blat.proc3829885.chain_1510	1	STRG.28482.1,blat.proc3829885.chain_1511	2
scaffold_21	spliced_intron	10990182	10990263	+	asmbl_28921	none	STRG.24570.1	1	Trinity_GG_13538_c0_g1_i1,blat.proc3829883.chain_1557	2
scaffold_20	alternate_exon	3256982	3262388	+	asmbl_25678	none	STRG.23041.1,Trinity_GG_34246_c0_g1_i1,blat.proc3829883.chain_149,blat.proc3829901.chain_3677	4	STRG.23041.3	1
scaffold_17	alt_donor	13610707	13610708	+	asmbl_18459	none	STRG.20825.1	1	STRG.20825.2	1
scaffold_16	alternate_exon	11774056	11774095	+	asmbl_17407	none	Trinity_GG_10780_c0_g1_i1,blat.proc3829881.chain_540	2	STRG.19687.1,Trinity_GG_10780_c0_g1_i2,blat.proc3829881.chain_541	3
scaffold_17	ends_in_intron	7062136	7062136	-	asmbl_19071	none	Trinity_GG_28473_c0_g1_i3	1	Trinity_GG_28473_c0_g1_i1,blat.proc3829897.chain_1342	2
scaffold_19	alternate_exon	13233721	13233911	-	asmbl_21838	none	blat.proc3829897.chain_3358	1	STRG.22682.3,blat.proc3829897.chain_3357	2
scaffold_20	starts_in_intron	8341142	8341142	-	asmbl_26904,asmbl_26907	none	STRG.23364.2,blat.proc3829899.chain_431	2	STRG.23364.1,STRG.23364.3,blat.proc3829899.chain_432,blat.proc3829899.chain_433,blat.proc3829899.chain_434,blat.proc3829899.chain_435	6
scaffold_19	starts_in_intron	678381	678381	+	asmbl_22001	none	Trinity_GG_12091_c0_g1_i2,blat.proc3829881.chain_2827	2	STRG.21838.1,blat.proc3829881.chain_2826	2
scaffold_8	ends_in_intron	11566061	11566061	+	asmbl_52224	none	blat.proc3829875.chain_2775	1	STRG.10345.1	1
scaffold_25	spliced_intron	4871626	4872194	-	asmbl_34213	none	STRG.27404.1,Trinity_GG_32325_c0_g1_i2,blat.proc3829901.chain_645	3	STRG.27404.2,blat.proc3829901.chain_646	2
scaffold_5	spliced_intron	9704594	9704702	-	asmbl_45679	none	blat.proc3829889.chain_2369	1	blat.proc3829889.chain_2370,blat.proc3829889.chain_2373,blat.proc3829889.chain_2376	3
scaffold_11	alternate_exon	6249974	6251733	+	asmbl_5587	none	STRG.13670.1,blat.proc3829877.chain_2180	2	blat.proc3829877.chain_2181	1
scaffold_8	spliced_intron	9870650	9870748	+	asmbl_52100,asmbl_52101,asmbl_52104,asmbl_52105,asmbl_52107,asmbl_52109,asmbl_52110	none	STRG.10225.2,STRG.10225.4,blat.proc3829875.chain_2691,blat.proc3829875.chain_2692,blat.proc3829875.chain_2694,blat.proc3829875.chain_2696,blat.proc3829875.chain_2697	7	blat.proc3829875.chain_2695	1
scaffold_20	starts_in_intron	5908617	5908617	+	asmbl_25796	none	Trinity_GG_12806_c0_g1_i1,blat.proc3829883.chain_321	2	STRG.23182.1,STRG.23182.3	2
scaffold_9	spliced_intron	6901990	6902110	-	asmbl_55048,asmbl_55049,asmbl_55051,asmbl_55053,asmbl_55054,asmbl_55056	none	STRG.11191.1,STRG.11191.2,blat.proc3829891.chain_3368,blat.proc3829891.chain_3369,blat.proc3829891.chain_3371,blat.proc3829891.chain_3372,blat.proc3829891.chain_3373,blat.proc3829891.chain_3375	8	STRG.11191.3,STRG.11191.4,STRG.11191.5,blat.proc3829891.chain_3366,blat.proc3829891.chain_3367,blat.proc3829891.chain_3370,blat.proc3829891.chain_3374	7
scaffold_3	spliced_intron	1531004	1531031	-	asmbl_38672	none	STRG.2976.2	1	STRG.2976.1,Trinity_GG_18613_c0_g1_i1,blat.proc3829887.chain_2719	3
scaffold_10	alt_donor	6078705	6078706	-	asmbl_3349	none	blat.proc3829893.chain_919	1	STRG.12437.1,blat.proc3829893.chain_921	2
scaffold_15	starts_in_intron	2776026	2776026	-	asmbl_15055	none	blat.proc3829895.chain_2772	1	STRG.18054.1,STRG.18054.2,STRG.18054.3,blat.proc3829895.chain_2771	4
scaffold_12	alt_donor	14104508	14104509	-	asmbl_8112,asmbl_8113	none	Trinity_GG_25546_c0_g1_i2,blat.proc3829893.chain_3678,blat.proc3829893.chain_3679	3	Trinity_GG_25546_c0_g1_i8,blat.proc3829893.chain_3677,blat.proc3829893.chain_3680	3
scaffold_20	alt_donor	12075217	12075218	-	asmbl_27143	none	blat.proc3829899.chain_691	1	blat.proc3829899.chain_692	1
scaffold_24	alt_acceptor	2186897	2186898	+	asmbl_32093	none	STRG.26425.1	1	blat.proc3829883.chain_3311	1
scaffold_2	alt_acceptor	14196877	14196878	-	asmbl_23591	none	STRG.2411.3	1	STRG.2411.1,STRG.2411.2,STRG.2411.4,blat.proc3829887.chain_2297,blat.proc3829887.chain_2298,blat.proc3829887.chain_2300	6
scaffold_10	ends_in_intron	3065395	3065395	-	asmbl_3073	none	blat.proc3829893.chain_571	1	STRG.12119.1,STRG.12119.2,STRG.12119.3,Trinity_GG_23763_c0_g1_i2,blat.proc3829893.chain_569,blat.proc3829893.chain_570,blat.proc3829893.chain_573	7
scaffold_15	spliced_intron	5738488	5739051	-	asmbl_15244	none	STRG.18248.4	1	STRG.18248.1,STRG.18248.2,STRG.18248.3,blat.proc3829895.chain_3018	4
scaffold_7	retained_intron	18392890	18393030	-	asmbl_50291	none	Trinity_GG_22427_c0_g1_i8,blat.proc3829891.chain_1872	2	STRG.9659.3,Trinity_GG_22427_c0_g1_i11,Trinity_GG_22427_c0_g1_i5,blat.proc3829891.chain_1867,blat.proc3829891.chain_1868,blat.proc3829891.chain_1875	6
scaffold_15	starts_in_intron	8166306	8166306	+	asmbl_14268	none	blat.proc3829879.chain_3007	1	STRG.18377.1,STRG.18377.2,blat.proc3829879.chain_3009,blat.proc3829879.chain_3010	4
scaffold_2	starts_in_intron	9492068	9492068	+	asmbl_24718	none	Trinity_GG_1229_c0_g1_i2,blat.proc3829871.chain_2287	2	STRG.2180.1,Trinity_GG_1229_c0_g1_i1,blat.proc3829871.chain_2286	3
scaffold_13	retained_intron	16460509	16460808	-	asmbl_10275	none	Trinity_GG_26334_c0_g1_i4,blat.proc3829895.chain_1354	2	STRG.16689.5	1
scaffold_14	spliced_intron	8371335	8371512	-	asmbl_13279	none	STRG.17259.1,Trinity_GG_26687_c1_g1_i1,blat.proc3829895.chain_1951	3	STRG.17259.2	1
scaffold_20	starts_in_intron	4356030	4356030	+	asmbl_25729	none	blat.proc3829883.chain_178	1	STRG.23101.1,STRG.23101.2,blat.proc3829883.chain_177	3
scaffold_2	starts_in_intron	15942920	15942920	+	asmbl_25112	none	Trinity_GG_1437_c0_g1_i2,blat.proc3829871.chain_2722	2	STRG.2535.1,Trinity_GG_1437_c0_g1_i1,blat.proc3829871.chain_2721	3
scaffold_26	spliced_intron	9775764	9775840	+	asmbl_35777,asmbl_35780	none	STRG.28501.2,STRG.28501.4	2	STRG.28501.1,STRG.28501.10,STRG.28501.3,STRG.28501.6,STRG.28501.9,Trinity_GG_15770_c0_g1_i1,blat.proc3829885.chain_1533,blat.proc3829885.chain_1538	8
scaffold_5	alternate_exon	9072693	9072758	+	asmbl_44257	none	STRG.6235.3,blat.proc3829873.chain_2400	2	STRG.6235.1,blat.proc3829873.chain_2398	2
scaffold_11	starts_in_intron	11931205	11931205	-	asmbl_7031	none	blat.proc3829893.chain_2562	1	STRG.14160.1,STRG.14160.2,STRG.14160.3,STRG.14160.4,STRG.14160.5	5
scaffold_4	spliced_intron	6294036	6294226	+	asmbl_42716	none	STRG.4499.1,blat.proc3829873.chain_849	2	blat.proc3829873.chain_850	1
scaffold_5	spliced_intron	8070415	8070604	+	asmbl_44185	none	STRG.6161.1,blat.proc3829873.chain_2255	2	STRG.6161.2,STRG.6161.3,Trinity_GG_3334_c0_g1_i2,blat.proc3829873.chain_2256	4
scaffold_8	ends_in_intron	12976925	12976925	-	asmbl_53267	none	blat.proc3829891.chain_2609	1	STRG.10470.1,blat.proc3829891.chain_2610	2
scaffold_27	retained_intron	7277803	7277891	+	asmbl_36401	none	STRG.29070.1,Trinity_GG_16046_c0_g1_i1,blat.proc3829885.chain_2123	3	STRG.29070.2	1
scaffold_9	alt_acceptor	5085774	5085775	+	asmbl_53974	none	STRG.11075.2	1	STRG.11075.1	1
scaffold_25	skipped_exon	7343437	7344530	+	asmbl_33668	none	STRG.27572.2	1	STRG.27572.1,blat.proc3829885.chain_549	2
scaffold_12	retained_intron	3326235	3326361	-	asmbl_7488	none	STRG.14541.2,blat.proc3829893.chain_2910	2	STRG.14541.1,blat.proc3829893.chain_2909	2
scaffold_6	spliced_intron	12999352	13000120	-	asmbl_48799	none	STRG.8061.8,Trinity_GG_21547_c0_g1_i7,blat.proc3829891.chain_269	3	STRG.8061.7,Trinity_GG_21547_c0_g1_i11,Trinity_GG_21547_c0_g1_i16,blat.proc3829891.chain_268,blat.proc3829891.chain_270	5
scaffold_19	alt_donor	7884792	7884793	-	asmbl_21474	none	STRG.22241.2	1	STRG.22241.1,blat.proc3829897.chain_2936	2
scaffold_20	ends_in_intron	4480985	4480985	-	asmbl_26658	none	Trinity_GG_29865_c0_g2_i1,blat.proc3829899.chain_60	2	STRG.23113.1,STRG.23113.2,blat.proc3829899.chain_58,blat.proc3829899.chain_59	4
scaffold_4	starts_in_intron	14571324	14571324	+	asmbl_43223	none	STRG.5074.3,blat.proc3829873.chain_1402	2	STRG.5074.1,STRG.5074.2,blat.proc3829873.chain_1399,blat.proc3829873.chain_1400	4
scaffold_6	retained_intron	11464105	11464309	-	asmbl_48693	none	blat.proc3829891.chain_180	1	STRG.7935.1,blat.proc3829891.chain_179,blat.proc3829891.chain_181	3
scaffold_25	starts_in_intron	290849	290849	+	asmbl_33316	none	STRG.27047.2	1	STRG.27047.1	1
scaffold_4	spliced_intron	4449410	4449595	+	asmbl_42604	none	STRG.4349.1,Trinity_GG_2435_c1_g1_i1,blat.proc3829873.chain_765	3	Trinity_GG_2435_c1_g1_i2,blat.proc3829873.chain_766	2
scaffold_14	spliced_intron	1070202	1070949	+	asmbl_11763,asmbl_11767,asmbl_11768,asmbl_11771,asmbl_11772	none	STRG.16754.1,STRG.16754.2,Trinity_GG_9205_c0_g1_i2,blat.proc3829879.chain_1436,blat.proc3829879.chain_1438,blat.proc3829879.chain_1441	6	STRG.16754.3,Trinity_GG_9205_c0_g1_i3,blat.proc3829879.chain_1437,blat.proc3829879.chain_1439,blat.proc3829879.chain_1440,blat.proc3829879.chain_1442	6
scaffold_28	alt_donor	7189702	7189703	-	asmbl_37708,asmbl_37709	none	STRG.29757.1,blat.proc3829901.chain_2896	2	STRG.29757.2	1
scaffold_13	alt_acceptor	12253712	12253713	+	asmbl_11334	none	STRG.16339.3	1	STRG.16339.1,STRG.16339.2,Trinity_GG_8947_c0_g1_i1,Trinity_GG_8947_c0_g1_i3,blat.proc3829879.chain_1005,blat.proc3829879.chain_1006,blat.proc3829879.chain_1007	7
scaffold_22	alternate_exon	10681482	10681709	-	asmbl_30387	none	STRG.25391.3	1	STRG.25391.1,STRG.25391.2	2
scaffold_13	skipped_exon	5389961	5391342	+	asmbl_10826	none	STRG.15821.1,blat.proc3829879.chain_457	2	STRG.15821.2	1
scaffold_14	alt_acceptor	13906536	13906537	+	asmbl_12504	none	blat.proc3829879.chain_2334	1	STRG.17656.3,blat.proc3829879.chain_2333	2
scaffold_5	alternate_exon	19273975	19274199	+	asmbl_44964	none	STRG.7020.1,Trinity_GG_3869_c0_g1_i3,blat.proc3829873.chain_3182	3	STRG.7020.2,STRG.7020.4,Trinity_GG_3869_c0_g1_i2,blat.proc3829873.chain_3181	4
scaffold_23	spliced_intron	3655994	3656154	+	asmbl_30764	none	STRG.25778.1,blat.proc3829883.chain_2610	2	STRG.25778.2,Trinity_GG_14190_c0_g1_i1,Trinity_GG_14190_c0_g1_i3,blat.proc3829883.chain_2611,blat.proc3829883.chain_2612	5
scaffold_18	starts_in_intron	5589683	5589683	+	asmbl_20625	none	blat.proc3829881.chain_2246	1	STRG.21307.1,STRG.21307.2,blat.proc3829881.chain_2242,blat.proc3829881.chain_2243,blat.proc3829881.chain_2244	5
scaffold_11	retained_intron	7924464	7925337	+	asmbl_5664	none	STRG.13793.2,Trinity_GG_7594_c0_g1_i2,blat.proc3829877.chain_2264	3	STRG.13793.1,Trinity_GG_7594_c0_g1_i3,blat.proc3829877.chain_2265	3
scaffold_2	retained_exon	893276	893361	+	asmbl_24162	none	Trinity_GG_899_c0_g2_i7	1	STRG.1565.1,STRG.1565.2,STRG.1565.3,STRG.1565.4,blat.proc3829871.chain_1631,blat.proc3829871.chain_1632,blat.proc3829871.chain_1634,blat.proc3829871.chain_1635,blat.proc3829871.chain_1636	9
scaffold_13	alt_acceptor	7085089	7085090	-	asmbl_9807	none	STRG.16000.1,blat.proc3829895.chain_774	2	STRG.16000.2	1
scaffold_22	ends_in_intron	7884656	7884656	-	asmbl_30196	none	blat.proc3829899.chain_2212	1	blat.proc3829899.chain_2210	1
scaffold_14	retained_exon	7432963	7432983	+	asmbl_12137	none	STRG.17164.2,blat.proc3829879.chain_1886	2	STRG.17164.1,STRG.17164.3,blat.proc3829879.chain_1885	3
scaffold_22	retained_intron	7901370	7901566	-	asmbl_30207,asmbl_30209	none	STRG.25123.1,STRG.25123.3,Trinity_GG_31043_c0_g1_i2,blat.proc3829899.chain_2199	4	STRG.25123.2,Trinity_GG_31043_c0_g1_i1,blat.proc3829899.chain_2200	3
scaffold_5	spliced_intron	10529716	10530671	+	asmbl_44347	none	STRG.6331.2	1	STRG.6331.1,Trinity_GG_3449_c0_g1_i1,Trinity_GG_3449_c0_g1_i2,blat.proc3829873.chain_2469,blat.proc3829873.chain_2470	5
scaffold_4	starts_in_intron	6283737	6283737	-	asmbl_41412	none	blat.proc3829889.chain_669	1	STRG.4498.1,STRG.4498.2,Trinity_GG_19560_c0_g1_i1,Trinity_GG_19560_c0_g1_i2,Trinity_GG_19560_c0_g1_i3,Trinity_GG_19560_c0_g1_i6,Trinity_GG_19560_c0_g1_i9,blat.proc3829889.chain_662,blat.proc3829889.chain_663,blat.proc3829889.chain_664,blat.proc3829889.chain_665,blat.proc3829889.chain_666	12
scaffold_7	spliced_intron	13210711	13210856	+	asmbl_51201,asmbl_51202,asmbl_51203,asmbl_51206	none	STRG.9420.2,STRG.9420.3,STRG.9420.4,blat.proc3829875.chain_1881,blat.proc3829875.chain_1882,blat.proc3829875.chain_1883	6	STRG.9420.1,blat.proc3829875.chain_1884	2
scaffold_5	alt_acceptor	18221516	18221517	+	asmbl_44880	none	STRG.6950.4	1	STRG.6950.1,STRG.6950.2,STRG.6950.3,STRG.6950.5,blat.proc3829873.chain_3088,blat.proc3829873.chain_3089	6
scaffold_15	retained_intron	11301555	11302007	+	asmbl_14439	none	blat.proc3829879.chain_3187	1	STRG.18591.1,blat.proc3829879.chain_3184	2
scaffold_5	spliced_intron	11630546	11631086	-	asmbl_45800,asmbl_45802	none	blat.proc3829889.chain_2525,blat.proc3829889.chain_2529	2	blat.proc3829889.chain_2526,blat.proc3829889.chain_2528	2
scaffold_24	alternate_exon	1910689	1910930	-	asmbl_32735	none	STRG.26399.4,blat.proc3829899.chain_3440	2	blat.proc3829899.chain_3439	1
scaffold_16	starts_in_intron	4880020	4880020	-	asmbl_16251	none	blat.proc3829897.chain_246	1	STRG.19250.1	1
scaffold_14	starts_in_intron	15121750	15121750	+	asmbl_12552	none	blat.proc3829879.chain_2415	1	Trinity_GG_9754_c0_g1_i14,blat.proc3829879.chain_2414	2
scaffold_7	retained_intron	4915758	4915841	+	asmbl_50643	none	STRG.8828.1,blat.proc3829875.chain_1206	2	STRG.8828.4	1
scaffold_13	starts_in_intron	7417355	7417355	-	asmbl_9840	none	blat.proc3829895.chain_805	1	STRG.16022.1,blat.proc3829895.chain_804	2
scaffold_13	starts_in_intron	11601244	11601244	+	asmbl_11272	none	Trinity_GG_8948_c0_g1_i9,blat.proc3829879.chain_1021	2	STRG.16295.1,STRG.16295.2,STRG.16295.3,STRG.16295.5,blat.proc3829879.chain_1014,blat.proc3829879.chain_1015,blat.proc3829879.chain_1016,blat.proc3829879.chain_1018,blat.proc3829879.chain_1019,blat.proc3829879.chain_1020,blat.proc3829879.chain_1023	11
scaffold_27	alt_donor	9329778	9329779	-	asmbl_37085	none	blat.proc3829901.chain_2278	1	STRG.29165.1,STRG.29165.2,blat.proc3829901.chain_2279,blat.proc3829901.chain_2280	4
scaffold_1	spliced_intron	14274324	14274482	+	asmbl_2342	none	STRG.1020.1,blat.proc3829871.chain_1117	2	STRG.1020.2,blat.proc3829871.chain_1118,blat.proc3829871.chain_1119	3
scaffold_18	ends_in_intron	13654243	13654243	-	asmbl_20209	none	blat.proc3829897.chain_2558	1	STRG.21788.1,STRG.21788.2,blat.proc3829897.chain_2559,blat.proc3829897.chain_2560	4
scaffold_6	starts_in_intron	18011119	18011119	-	asmbl_49157	none	blat.proc3829891.chain_783	1	STRG.8480.1,blat.proc3829891.chain_779,blat.proc3829891.chain_780,blat.proc3829891.chain_781	4
scaffold_16	skipped_exon	325505	325750	-	asmbl_16027,asmbl_16028,asmbl_16029,asmbl_16030	none	STRG.19019.2,STRG.19019.3,blat.proc3829897.chain_59,blat.proc3829897.chain_62	4	STRG.19019.1,blat.proc3829897.chain_60,blat.proc3829897.chain_61	3
scaffold_5	retained_intron	13246847	13246949	+	asmbl_44544	none	blat.proc3829873.chain_2703	1	STRG.6561.1,STRG.6561.2,STRG.6561.3,blat.proc3829873.chain_2704,blat.proc3829873.chain_2706	5
scaffold_9	spliced_intron	5552129	5552354	-	asmbl_54975	none	STRG.11124.3	1	blat.proc3829891.chain_3228	1
scaffold_7	alt_acceptor	2519479	2519480	+	asmbl_50532	none	blat.proc3829875.chain_1108	1	blat.proc3829875.chain_1109	1
scaffold_16	spliced_intron	672773	672865	+	asmbl_16820,asmbl_16821	none	STRG.19032.1,STRG.19032.4,Trinity_GG_10438_c0_g1_i7,blat.proc3829879.chain_3651,blat.proc3829879.chain_3652,blat.proc3829879.chain_3653	6	STRG.19032.2,STRG.19032.3,Trinity_GG_10438_c0_g1_i2,Trinity_GG_10438_c0_g1_i3,blat.proc3829879.chain_3650,blat.proc3829879.chain_3654	6
scaffold_14	starts_in_intron	1327536	1327536	+	asmbl_11790	none	Trinity_GG_9241_c1_g1_i1,blat.proc3829879.chain_1517	2	STRG.16771.1,Trinity_GG_9241_c0_g1_i3,blat.proc3829879.chain_1515,blat.proc3829879.chain_1516	4
scaffold_20	spliced_intron	10660786	10661477	+	asmbl_26129	none	STRG.23585.2,Trinity_GG_12978_c0_g1_i1,blat.proc3829883.chain_588	3	STRG.23585.1,Trinity_GG_12978_c0_g1_i3,blat.proc3829883.chain_587	3
scaffold_26	retained_intron	4109409	4109599	+	asmbl_35388	none	STRG.28091.3	1	STRG.28091.1,STRG.28091.2,blat.proc3829885.chain_967	3
scaffold_11	alt_acceptor	10981902	10981903	-	asmbl_6988	none	STRG.14049.3	1	STRG.14049.2	1
scaffold_13	alternate_exon	15510175	15512242	+	asmbl_11490	none	STRG.16580.1,blat.proc3829879.chain_1335	2	STRG.16580.3	1
scaffold_23	spliced_intron	8125986	8126005	-	asmbl_31794	none	STRG.26105.1	1	Trinity_GG_31605_c0_g1_i1	1
scaffold_23	skipped_exon	10701051	10702423	+	asmbl_31160	none	STRG.26237.2	1	STRG.26237.1	1
scaffold_14	retained_intron	10717597	10717700	+	asmbl_12325	none	Trinity_GG_9575_c0_g1_i1,blat.proc3829879.chain_2119	2	STRG.17408.1,STRG.17408.2,Trinity_GG_9575_c0_g1_i2,blat.proc3829879.chain_2118	4
scaffold_21	alt_acceptor	3015618	3015619	+	asmbl_28455,asmbl_28456,asmbl_28457,asmbl_28459	none	STRG.23914.1,STRG.23914.2,blat.proc3829883.chain_1067,blat.proc3829883.chain_1068,blat.proc3829883.chain_1070,blat.proc3829883.chain_1071	6	blat.proc3829883.chain_1069	1
scaffold_2	alternate_exon	180968	180984	+	asmbl_24103	none	blat.proc3829871.chain_1578	1	STRG.1515.1	1
scaffold_25	alternate_exon	6163059	6163226	+	asmbl_33595	none	STRG.27487.4	1	STRG.27487.1,blat.proc3829885.chain_499	2
scaffold_14	ends_in_intron	1481054	1481054	-	asmbl_12868	none	Trinity_GG_26375_c2_g1_i1,blat.proc3829895.chain_1435	2	STRG.16782.1,blat.proc3829895.chain_1433	2
scaffold_7	alt_donor	5923004	5923005	+	asmbl_50712	none	STRG.8889.2	1	STRG.8889.1,Trinity_GG_4857_c0_g1_i1,blat.proc3829875.chain_1247	3
scaffold_17	ends_in_intron	8320952	8320952	+	asmbl_18104	none	Trinity_GG_11199_c0_g1_i3,blat.proc3829881.chain_1227	2	STRG.20440.1,Trinity_GG_11199_c0_g1_i1,Trinity_GG_11199_c0_g1_i2,blat.proc3829881.chain_1226,blat.proc3829881.chain_1228	5
scaffold_13	starts_in_intron	3100037	3100037	-	asmbl_9479	none	Trinity_GG_25739_c0_g1_i1,blat.proc3829895.chain_324	2	STRG.15605.1,blat.proc3829895.chain_323	2
scaffold_7	alt_acceptor	4035759	4035760	+	asmbl_50587,asmbl_50589	none	STRG.8788.1,Trinity_GG_4801_c0_g1_i1,Trinity_GG_4801_c0_g1_i4,blat.proc3829875.chain_1153,blat.proc3829875.chain_1154	5	STRG.8788.2,Trinity_GG_4801_c0_g1_i3,blat.proc3829875.chain_1152	3
scaffold_18	spliced_intron	2565486	2565566	-	asmbl_19765	none	STRG.21116.1,blat.proc3829897.chain_2014	2	STRG.21116.2	1
scaffold_4	alternate_exon	5079528	5079618	+	asmbl_42663	none	STRG.4396.2,Trinity_GG_2440_c0_g1_i1,blat.proc3829873.chain_773	3	STRG.4396.1,Trinity_GG_2440_c0_g1_i2,blat.proc3829873.chain_774	3
scaffold_13	starts_in_intron	11792491	11792491	-	asmbl_10069	none	blat.proc3829895.chain_1053	1	STRG.16306.1,blat.proc3829895.chain_1052	2
scaffold_1	spliced_intron	9306095	9306201	+	asmbl_1970,asmbl_1972	none	STRG.628.1,blat.proc3829871.chain_691,blat.proc3829871.chain_692	3	blat.proc3829871.chain_690	1
scaffold_13	alt_acceptor	8954856	8954857	+	asmbl_11146,asmbl_11149,asmbl_11150	none	STRG.16151.1,STRG.16151.2,blat.proc3829879.chain_862,blat.proc3829879.chain_865	4	STRG.16151.3,blat.proc3829879.chain_863,blat.proc3829879.chain_864	3
scaffold_17	alternate_exon	6799513	6799713	+	asmbl_18005	none	blat.proc3829881.chain_1108	1	STRG.20322.3	1
scaffold_10	alt_acceptor	8442049	8442050	-	asmbl_3500	none	STRG.12587.1,blat.proc3829893.chain_1081	2	STRG.12587.2	1
scaffold_1	ends_in_intron	5207359	5207359	+	asmbl_1704,asmbl_1705,asmbl_1708	none	blat.proc3829871.chain_396,blat.proc3829871.chain_397,blat.proc3829871.chain_398	3	STRG.323.3,blat.proc3829871.chain_391	2
scaffold_1	spliced_intron	5734339	5734453	+	asmbl_1758,asmbl_1759,asmbl_1761	none	STRG.380.1,STRG.380.2,blat.proc3829871.chain_442,blat.proc3829871.chain_443,blat.proc3829871.chain_446	5	STRG.380.3	1
scaffold_13	alt_acceptor	89549	89550	+	asmbl_10426,asmbl_10427,asmbl_10428,asmbl_10429	none	STRG.15412.1,STRG.15412.2,STRG.15412.3,STRG.15412.4,blat.proc3829879.chain_80	5	blat.proc3829879.chain_81	1
scaffold_13	alternate_exon	5507435	5507569	+	asmbl_10839	none	STRG.15830.4,Trinity_GG_8666_c0_g1_i3,blat.proc3829879.chain_462	3	STRG.15830.2,Trinity_GG_8666_c0_g1_i2,blat.proc3829879.chain_460	3
scaffold_13	spliced_intron	894021	894643	-	asmbl_9337	none	STRG.15448.7	1	STRG.15448.1,STRG.15448.2,STRG.15448.3,STRG.15448.4,STRG.15448.5,STRG.15448.6,Trinity_GG_25690_c0_g1_i4,blat.proc3829895.chain_212,blat.proc3829895.chain_213,blat.proc3829895.chain_214,blat.proc3829895.chain_215,blat.proc3829895.chain_216,blat.proc3829895.chain_219	13
scaffold_9	ends_in_intron	17743019	17743019	+	asmbl_54621	none	blat.proc3829877.chain_528	1	STRG.11853.1,STRG.11853.2,STRG.11853.3,blat.proc3829877.chain_521,blat.proc3829877.chain_522,blat.proc3829877.chain_523,blat.proc3829877.chain_525,blat.proc3829877.chain_526,blat.proc3829877.chain_527	9
scaffold_4	ends_in_intron	15164604	15164604	+	asmbl_43268	none	blat.proc3829873.chain_1464	1	STRG.5119.1,STRG.5119.2,blat.proc3829873.chain_1463,blat.proc3829873.chain_1465	4
scaffold_3	alternate_exon	5751391	5751619	+	asmbl_40040	none	STRG.3236.2	1	STRG.3236.1,Trinity_GG_1791_c0_g1_i1,blat.proc3829871.chain_3349	3
scaffold_10	retained_intron	207548	207639	-	asmbl_2841	none	blat.proc3829893.chain_335	1	STRG.11904.1,STRG.11904.2,blat.proc3829893.chain_336,blat.proc3829893.chain_337	4
scaffold_11	alt_donor	8044030	8044031	-	asmbl_6796	none	STRG.13798.1,blat.proc3829893.chain_2265	2	STRG.13798.2	1
scaffold_8	starts_in_intron	11757310	11757310	-	asmbl_53160	none	Trinity_GG_22743_c0_g1_i2,blat.proc3829891.chain_2446	2	STRG.10372.1,STRG.10372.2,STRG.10372.3,blat.proc3829891.chain_2447	4
scaffold_5	spliced_intron	12842254	12842348	+	asmbl_44496,asmbl_44500	none	STRG.6508.1,STRG.6508.3,Trinity_GG_3545_c0_g1_i3,blat.proc3829873.chain_2643	4	STRG.6508.2,Trinity_GG_3545_c0_g1_i1,blat.proc3829873.chain_2642	3
scaffold_5	alt_donor	11449564	11449565	+	asmbl_44412	none	STRG.6401.1,blat.proc3829873.chain_2543	2	STRG.6401.2	1
scaffold_1	skipped_exon	4237758	4239798	+	asmbl_1643,asmbl_1648,asmbl_1653	none	STRG.253.3,STRG.253.4,blat.proc3829871.chain_228,blat.proc3829871.chain_232	4	STRG.253.2,blat.proc3829871.chain_224,blat.proc3829871.chain_233	3
scaffold_8	retained_exon	13256459	13256547	+	asmbl_52342	none	STRG.10504.2,blat.proc3829875.chain_3009	2	STRG.10504.1,blat.proc3829875.chain_3008	2
scaffold_17	retained_exon	2355383	2355972	+	asmbl_17769	none	STRG.20017.2	1	blat.proc3829881.chain_853	1
scaffold_11	retained_intron	7049578	7049788	+	asmbl_5611	none	Trinity_GG_7553_c0_g1_i5,blat.proc3829877.chain_2195	2	STRG.13722.1,Trinity_GG_7553_c0_g1_i7,blat.proc3829877.chain_2194	3
scaffold_4	starts_in_intron	19613476	19613476	-	asmbl_42228	none	blat.proc3829889.chain_1661	1	STRG.5554.2	1
scaffold_20	ends_in_intron	7859108	7859108	-	asmbl_26856	none	blat.proc3829899.chain_379	1	STRG.23322.1,STRG.23322.2,blat.proc3829899.chain_377,blat.proc3829899.chain_378	4
scaffold_23	spliced_intron	222857	223034	+	asmbl_30597	none	STRG.25521.2,blat.proc3829883.chain_2456	2	STRG.25521.1,blat.proc3829883.chain_2458	2
scaffold_3	alt_donor	6659645	6659646	+	asmbl_40061,asmbl_40066,asmbl_40068	none	STRG.3290.4,STRG.3290.5,blat.proc3829871.chain_3459,blat.proc3829871.chain_3468	4	STRG.3290.1,STRG.3290.2,Trinity_GG_1861_c0_g1_i10,blat.proc3829871.chain_3460,blat.proc3829871.chain_3461,blat.proc3829871.chain_3464,blat.proc3829871.chain_3469,blat.proc3829871.chain_3471	8
scaffold_11	alternate_exon	4673294	4690785	-	asmbl_6585,asmbl_6587,asmbl_6588	none	STRG.13547.2,STRG.13547.3,STRG.13547.5,blat.proc3829893.chain_1970,blat.proc3829893.chain_2029,blat.proc3829893.chain_2031,blat.proc3829893.chain_2032	7	Trinity_GG_24574_c0_g1_i1,blat.proc3829893.chain_1974	2
scaffold_2	ends_in_intron	14221268	14221268	-	asmbl_23596	none	Trinity_GG_18307_c1_g1_i1,blat.proc3829887.chain_2204	2	STRG.2413.1	1
scaffold_20	starts_in_intron	7183907	7183907	+	asmbl_25856	none	Trinity_GG_12817_c0_g1_i4,blat.proc3829883.chain_343	2	STRG.23273.1	1
scaffold_17	alt_acceptor	3142991	3142992	-	asmbl_18847,asmbl_18848	none	STRG.20085.1,STRG.20085.3,Trinity_GG_28260_c0_g1_i1,Trinity_GG_28260_c0_g1_i2,blat.proc3829897.chain_1000,blat.proc3829897.chain_1001	6	STRG.20085.2	1
scaffold_3	alt_donor	10631381	10631382	+	asmbl_40234,asmbl_40236,asmbl_40237	none	blat.proc3829871.chain_3604,blat.proc3829871.chain_3606,blat.proc3829871.chain_3607,blat.proc3829871.chain_3609	4	STRG.3509.1,STRG.3509.2,STRG.3509.3,blat.proc3829871.chain_3605,blat.proc3829871.chain_3608	5
scaffold_3	alternate_exon	6174518	6176128	-	asmbl_38855,asmbl_38858	none	blat.proc3829887.chain_2941,blat.proc3829887.chain_2946	2	blat.proc3829887.chain_2942,blat.proc3829887.chain_2944,blat.proc3829887.chain_2945	3
scaffold_10	alternate_exon	16252754	16257717	+	asmbl_4984	none	STRG.13097.3	1	STRG.13097.4	1
scaffold_22	retained_intron	7891905	7892011	-	asmbl_30200	none	STRG.25122.2,blat.proc3829899.chain_2219	2	STRG.25122.1,blat.proc3829899.chain_2221	2
scaffold_23	alt_acceptor	7907664	7907665	+	asmbl_31034	none	STRG.26075.1,blat.proc3829883.chain_2972,blat.proc3829883.chain_2973	3	STRG.26075.2,blat.proc3829883.chain_2971	2
scaffold_23	spliced_intron	10020609	10020721	+	asmbl_31117,asmbl_31121	none	STRG.26185.1,blat.proc3829883.chain_3095,blat.proc3829883.chain_3098	3	blat.proc3829883.chain_3096	1
scaffold_4	retained_exon	12629160	12629249	-	asmbl_41681,asmbl_41683	none	STRG.4901.1,STRG.4901.3,blat.proc3829889.chain_893,blat.proc3829889.chain_896	4	blat.proc3829889.chain_894	1
scaffold_7	retained_intron	18392945	18393030	-	asmbl_50291	none	Trinity_GG_22427_c0_g1_i8,blat.proc3829891.chain_1872	2	STRG.9659.1,Trinity_GG_22427_c0_g1_i10,blat.proc3829891.chain_1869,blat.proc3829891.chain_1870	4
scaffold_11	alt_acceptor	6997532	6997533	-	asmbl_6729	none	STRG.13708.2	1	STRG.13708.1	1
scaffold_3	alternate_exon	10277685	10279075	+	asmbl_40205,asmbl_40209	none	STRG.3461.2,STRG.3461.4,Trinity_GG_19017_c0_g1_i1,Trinity_GG_19049_c0_g1_i1,Trinity_GG_1953_c1_g1_i1,Trinity_GG_1953_c1_g1_i2,blat.proc3829871.chain_3625,blat.proc3829871.chain_3627,blat.proc3829871.chain_3628,blat.proc3829887.chain_3429,blat.proc3829887.chain_3483	11	STRG.3461.3,blat.proc3829871.chain_3622	2
scaffold_18	alternate_exon	2818703	2834055	+	asmbl_20449	none	STRG.21133.1,blat.proc3829881.chain_1916,blat.proc3829881.chain_1927	3	STRG.21133.4,STRG.21133.5,blat.proc3829881.chain_1914,blat.proc3829881.chain_1917	4
scaffold_20	starts_in_intron	4385028	4385028	+	asmbl_25740	none	blat.proc3829883.chain_241	1	STRG.23104.1,STRG.23104.2,blat.proc3829883.chain_240,blat.proc3829883.chain_242	4
scaffold_7	retained_intron	11987431	11987607	-	asmbl_49991	none	STRG.9293.1,blat.proc3829891.chain_1527	2	STRG.9293.2,blat.proc3829891.chain_1528	2
scaffold_9	alt_acceptor	1232182	1232183	+	asmbl_53785	none	STRG.10820.2	1	STRG.10820.1	1
scaffold_12	retained_intron	5039289	5039416	-	asmbl_7607	none	blat.proc3829893.chain_2957	1	STRG.14668.1,STRG.14668.2,blat.proc3829893.chain_2958	3
scaffold_14	alternate_exon	14148478	14148583	+	asmbl_12513	none	STRG.17676.4	1	STRG.17676.2,Trinity_GG_9669_c0_g1_i3,blat.proc3829879.chain_2282,blat.proc3829879.chain_2283,blat.proc3829879.chain_2284	5
scaffold_18	skipped_exon	9168049	9170424	+	asmbl_20904,asmbl_20906	none	STRG.21549.2,STRG.21549.3,Trinity_GG_11916_c0_g1_i2,blat.proc3829881.chain_2540	4	STRG.21549.1,Trinity_GG_11916_c0_g1_i3,blat.proc3829881.chain_2539	3
scaffold_1	skipped_exon	12463351	12464743	-	asmbl_725,asmbl_727	none	STRG.864.3,STRG.864.4	2	STRG.864.1,STRG.864.2	2
scaffold_4	alt_acceptor	4426554	4426555	-	asmbl_41249,asmbl_41250,asmbl_41251	none	STRG.4342.1,STRG.4342.3,blat.proc3829889.chain_471,blat.proc3829889.chain_472,blat.proc3829889.chain_473	5	STRG.4342.2	1
scaffold_9	alt_donor	6274001	6274002	+	asmbl_54066	none	STRG.11154.1,blat.proc3829875.chain_3628	2	blat.proc3829875.chain_3629	1
scaffold_1	alt_acceptor	10409360	10409361	-	asmbl_588,asmbl_591	none	STRG.674.2,blat.proc3829887.chain_598	2	STRG.674.1,blat.proc3829887.chain_600,blat.proc3829887.chain_601	3
scaffold_23	retained_exon	3448205	3448277	-	asmbl_31514	none	STRG.25743.2	1	STRG.25743.1	1
scaffold_20	skipped_exon	2290860	2292024	+	asmbl_25637	none	STRG.22956.2	1	STRG.22956.1,blat.proc3829883.chain_108	2
scaffold_19	starts_in_intron	13005624	13005624	+	asmbl_22649,asmbl_22650,asmbl_22651	none	Trinity_GG_12510_c0_g1_i11,Trinity_GG_12510_c0_g1_i13,Trinity_GG_12510_c0_g1_i6,blat.proc3829881.chain_3578,blat.proc3829881.chain_3582,blat.proc3829881.chain_3584	6	STRG.22609.1,STRG.22609.2,Trinity_GG_12510_c0_g1_i1,Trinity_GG_12510_c0_g1_i10,Trinity_GG_12510_c0_g1_i14,Trinity_GG_12510_c0_g1_i5,blat.proc3829881.chain_3576,blat.proc3829881.chain_3581,blat.proc3829881.chain_3583,blat.proc3829881.chain_3585	10
scaffold_12	alternate_exon	6414173	6414226	+	asmbl_8639,asmbl_8642	none	STRG.14730.1,STRG.14730.2,blat.proc3829877.chain_3204	3	STRG.14730.3,STRG.14730.4,blat.proc3829877.chain_3205	3
scaffold_15	alternate_exon	14634503	14634907	-	asmbl_15750	none	STRG.18867.3,blat.proc3829895.chain_3643	2	blat.proc3829895.chain_3646	1
scaffold_8	spliced_intron	18162712	18162884	-	asmbl_53521,asmbl_53523,asmbl_53524,asmbl_53526	none	STRG.10720.1,Trinity_GG_22981_c0_g1_i1,Trinity_GG_22981_c0_g1_i2,Trinity_GG_22981_c0_g1_i6,blat.proc3829891.chain_2907,blat.proc3829891.chain_2908,blat.proc3829891.chain_2909,blat.proc3829891.chain_2912	8	Trinity_GG_22981_c0_g1_i9,blat.proc3829891.chain_2911,blat.proc3829891.chain_2913	3
scaffold_4	spliced_intron	6303061	6303375	+	asmbl_42718,asmbl_42719,asmbl_42720,asmbl_42721,asmbl_42723,asmbl_42724,asmbl_42725	none	STRG.4502.1,Trinity_GG_2497_c0_g1_i1,Trinity_GG_2497_c0_g1_i6,Trinity_GG_2497_c0_g1_i8,Trinity_GG_2497_c0_g1_i9,blat.proc3829873.chain_863,blat.proc3829873.chain_865,blat.proc3829873.chain_866,blat.proc3829873.chain_867,blat.proc3829873.chain_868,blat.proc3829873.chain_870,blat.proc3829873.chain_871	12	Trinity_GG_2497_c1_g1_i1,blat.proc3829873.chain_872	2
scaffold_7	alt_acceptor	12368412	12368413	+	asmbl_51130	none	blat.proc3829875.chain_1801	1	STRG.9325.1,blat.proc3829875.chain_1799,blat.proc3829875.chain_1800,blat.proc3829875.chain_1803	4
scaffold_13	alt_acceptor	3594017	3594018	+	asmbl_10697	none	STRG.15662.1,Trinity_GG_8585_c0_g1_i1,blat.proc3829879.chain_317	3	STRG.15662.2,Trinity_GG_8585_c0_g1_i3,blat.proc3829879.chain_316	3
scaffold_2	alternate_exon	5901551	5901609	-	asmbl_23189	none	STRG.1974.1,Trinity_GG_18104_c0_g1_i2,blat.proc3829887.chain_1818	3	STRG.1974.2,blat.proc3829887.chain_1819	2
scaffold_18	starts_in_intron	238253	238253	-	asmbl_19605	none	blat.proc3829897.chain_1863	1	STRG.20966.1,STRG.20966.3,blat.proc3829897.chain_1862	3
scaffold_1	alternate_exon	5997451	6000369	-	asmbl_315	none	STRG.403.1,blat.proc3829887.chain_310	2	STRG.403.3,blat.proc3829887.chain_308,blat.proc3829887.chain_312	3
scaffold_8	alt_acceptor	1801739	1801740	-	asmbl_52699	none	STRG.9770.2	1	STRG.9770.1	1
scaffold_18	skipped_exon	8726290	8727002	+	asmbl_20886	none	STRG.21533.4	1	STRG.21533.1,STRG.21533.2,STRG.21533.3,STRG.21533.5,blat.proc3829881.chain_2483,blat.proc3829881.chain_2484,blat.proc3829881.chain_2485,blat.proc3829881.chain_2486,blat.proc3829881.chain_2488	9
scaffold_12	retained_intron	12285468	12285624	-	asmbl_7984	none	STRG.15111.2	1	STRG.15111.1,blat.proc3829893.chain_3508,blat.proc3829893.chain_3509	3
scaffold_8	spliced_intron	3101869	3101985	-	asmbl_52721,asmbl_52722,asmbl_52724	none	STRG.9818.1,STRG.9818.2,blat.proc3829891.chain_2001,blat.proc3829891.chain_2003	4	blat.proc3829891.chain_2002	1
scaffold_28	alternate_exon	547394	547487	-	asmbl_37239	none	STRG.29253.2	1	STRG.29253.1,Trinity_GG_33370_c0_g1_i1,blat.proc3829901.chain_2335	3
scaffold_11	retained_intron	13252736	13252829	-	asmbl_7103	none	STRG.14183.3,Trinity_GG_24958_c0_g1_i1,blat.proc3829893.chain_2647	3	STRG.14183.1,STRG.14183.2,blat.proc3829893.chain_2644,blat.proc3829893.chain_2645,blat.proc3829893.chain_2646	5
scaffold_19	alternate_exon	7579100	7584123	+	asmbl_22275	none	STRG.22230.2,blat.proc3829881.chain_3168,blat.proc3829881.chain_3171	3	blat.proc3829881.chain_3174	1
scaffold_24	retained_intron	1945924	1946132	-	asmbl_32746	none	STRG.26401.3	1	STRG.26401.1,STRG.26401.2	2
scaffold_4	skipped_exon	19017964	19018075	-	asmbl_42145	none	STRG.5483.3	1	STRG.5483.2	1
scaffold_10	alternate_exon	4575599	4575866	-	asmbl_3219	none	STRG.12283.1	1	blat.proc3829893.chain_741	1
scaffold_9	spliced_intron	9369953	9370052	+	asmbl_54184,asmbl_54186	none	STRG.11279.1,blat.proc3829875.chain_3691,blat.proc3829875.chain_3693	3	blat.proc3829875.chain_3692	1
scaffold_17	alt_acceptor	9090251	9090252	-	asmbl_19197,asmbl_19199	none	STRG.20530.1,STRG.20530.3	2	STRG.20530.2,blat.proc3829897.chain_1482,blat.proc3829897.chain_1483	3
scaffold_2	skipped_exon	1616740	1617196	-	asmbl_22886	none	blat.proc3829887.chain_1451	1	STRG.1647.2,blat.proc3829887.chain_1449,blat.proc3829887.chain_1450	3
scaffold_11	starts_in_intron	4745611	4745611	-	asmbl_6601	none	blat.proc3829893.chain_2039	1	STRG.13555.1,STRG.13555.2,blat.proc3829893.chain_2035,blat.proc3829893.chain_2036,blat.proc3829893.chain_2038,blat.proc3829893.chain_2040	6
scaffold_1	spliced_intron	2796391	2796537	+	asmbl_1553	none	STRG.178.1,blat.proc3829871.chain_195	2	STRG.178.2,blat.proc3829871.chain_194	2
scaffold_18	spliced_intron	1621888	1621975	+	asmbl_20393	none	STRG.21039.1,blat.proc3829881.chain_1949	2	blat.proc3829881.chain_1948,blat.proc3829881.chain_1950	2
scaffold_15	spliced_intron	15914237	15914412	+	asmbl_14793,asmbl_14797,asmbl_14798	none	STRG.18967.1,STRG.18967.2,Trinity_GG_10379_c0_g1_i1,blat.proc3829879.chain_3524	4	Trinity_GG_10379_c0_g1_i3,blat.proc3829879.chain_3525	2
scaffold_13	retained_intron	350724	350855	-	asmbl_9270	none	Trinity_GG_25667_c0_g1_i8,blat.proc3829895.chain_168	2	STRG.15424.1,Trinity_GG_25667_c0_g1_i10,Trinity_GG_25667_c0_g1_i4,Trinity_GG_25667_c0_g1_i5,Trinity_GG_25667_c0_g1_i6,Trinity_GG_25667_c0_g1_i7,blat.proc3829895.chain_167,blat.proc3829895.chain_169,blat.proc3829895.chain_170,blat.proc3829895.chain_171,blat.proc3829895.chain_172,blat.proc3829895.chain_173	12
scaffold_26	spliced_intron	9082921	9083032	-	asmbl_35035,asmbl_35036,asmbl_35037,asmbl_35038	none	STRG.28453.1,STRG.28453.2,STRG.28453.3,blat.proc3829901.chain_1595,blat.proc3829901.chain_1596,blat.proc3829901.chain_1598	6	STRG.28453.4,Trinity_GG_32915_c0_g1_i1,blat.proc3829901.chain_1597	3
scaffold_6	retained_exon	18210213	18210333	-	asmbl_49166	none	STRG.8489.2	1	STRG.8489.1	1
scaffold_2	spliced_intron	16404516	16404596	+	asmbl_25171,asmbl_25172	none	STRG.2580.1,blat.proc3829871.chain_2790,blat.proc3829871.chain_2791	3	STRG.2580.2,Trinity_GG_1466_c0_g1_i1,blat.proc3829871.chain_2792	3
scaffold_23	skipped_exon	2164335	2164790	-	asmbl_31423	none	STRG.25669.3	1	STRG.25669.7	1
scaffold_14	ends_in_intron	3162462	3162462	+	asmbl_11880,asmbl_11881,asmbl_11883,asmbl_11886,asmbl_11890,asmbl_11892,asmbl_11894,asmbl_11895,asmbl_11896,asmbl_11897	none	STRG.16893.3,blat.proc3829879.chain_1625,blat.proc3829879.chain_1626,blat.proc3829879.chain_1629,blat.proc3829879.chain_1631,blat.proc3829879.chain_1632,blat.proc3829879.chain_1633,blat.proc3829879.chain_1635,blat.proc3829879.chain_1636,blat.proc3829879.chain_1639	10	STRG.16893.1,STRG.16893.2	2
scaffold_17	retained_intron	1292002	1292436	-	asmbl_18726	none	STRG.19952.5,blat.proc3829897.chain_841	2	STRG.19952.4,blat.proc3829897.chain_843	2
scaffold_21	ends_in_intron	6588957	6588957	+	asmbl_28688	none	blat.proc3829883.chain_1317	1	STRG.24169.1,Trinity_GG_13390_c0_g1_i2,blat.proc3829883.chain_1316,blat.proc3829883.chain_1318	4
scaffold_14	starts_in_intron	7508335	7508335	-	asmbl_13202,asmbl_13207	none	STRG.17180.3,STRG.17180.4,blat.proc3829895.chain_1867	3	STRG.17180.1,STRG.17180.2,blat.proc3829895.chain_1866,blat.proc3829895.chain_1868,blat.proc3829895.chain_1869,blat.proc3829895.chain_1870	6
scaffold_19	alt_donor	3682823	3682824	+	asmbl_22135	none	STRG.22046.4	1	STRG.22046.1,STRG.22046.2,STRG.22046.3,STRG.22046.6	4
scaffold_9	ends_in_intron	6867499	6867499	-	asmbl_55044	none	Trinity_GG_23216_c0_g1_i4,blat.proc3829891.chain_3332	2	STRG.11186.1,blat.proc3829891.chain_3331,blat.proc3829891.chain_3334	3
scaffold_5	spliced_intron	11802717	11802845	+	asmbl_44431,asmbl_44433	none	STRG.6430.1,Trinity_GG_3440_c0_g1_i2,blat.proc3829873.chain_2455	3	blat.proc3829873.chain_2457	1
scaffold_15	alternate_exon	7182916	7183837	-	asmbl_15295	none	STRG.18300.2,blat.proc3829895.chain_2965	2	STRG.18300.3,blat.proc3829895.chain_2963	2
scaffold_6	alt_donor	17671975	17671976	+	asmbl_47713,asmbl_47715	none	STRG.8454.3,STRG.8454.4,blat.proc3829875.chain_846	3	STRG.8454.1,Trinity_GG_4651_c0_g1_i2,Trinity_GG_4651_c0_g1_i5,blat.proc3829875.chain_847,blat.proc3829875.chain_850	5
scaffold_11	retained_intron	5258825	5258854	+	asmbl_5520	none	STRG.13602.2	1	STRG.13602.1	1
scaffold_8	retained_intron	7481498	7481842	-	asmbl_52904	none	Trinity_GG_22590_c0_g1_i3,blat.proc3829891.chain_2153	2	STRG.10067.1,blat.proc3829891.chain_2149,blat.proc3829891.chain_2151,blat.proc3829891.chain_2152	4
scaffold_12	retained_intron	9236297	9236367	-	asmbl_7787,asmbl_7789,asmbl_7793,asmbl_7798	none	STRG.14912.6,STRG.14912.8,blat.proc3829893.chain_3300,blat.proc3829893.chain_3304,blat.proc3829893.chain_3305	5	STRG.14912.4,STRG.14912.5,STRG.14912.7,blat.proc3829893.chain_3298	4
scaffold_589	spliced_intron	2439	2833	-	asmbl_46570	none	STRG.30367.2	1	STRG.30367.1,Trinity_GG_10757_c1_g1_i2,blat.proc3829901.chain_3421	3
scaffold_6	retained_intron	11489986	11490454	+	asmbl_47263,asmbl_47264,asmbl_47268,asmbl_47271,asmbl_47272	none	STRG.7936.1,STRG.7936.2,blat.proc3829875.chain_300,blat.proc3829875.chain_301,blat.proc3829875.chain_302,blat.proc3829875.chain_303,blat.proc3829875.chain_304	7	STRG.7936.3,STRG.7936.4,blat.proc3829875.chain_299	3
scaffold_27	spliced_intron	158035	158158	-	asmbl_36602,asmbl_36603	none	STRG.28533.1,STRG.28533.3,blat.proc3829901.chain_1699	3	STRG.28533.2,Trinity_GG_32959_c0_g1_i3,blat.proc3829901.chain_1698	3
scaffold_19	alternate_exon	8808969	8815762	+	asmbl_22364,asmbl_22366	none	STRG.22325.1,STRG.22325.2,blat.proc3829881.chain_3253	3	STRG.22325.4	1
scaffold_9	alt_acceptor	8395924	8395925	+	asmbl_54155,asmbl_54156,asmbl_54158,asmbl_54161	none	STRG.11249.2,STRG.11249.3,STRG.11249.4,STRG.11249.5,blat.proc3829877.chain_18,blat.proc3829877.chain_19,blat.proc3829877.chain_20	7	STRG.11249.1,blat.proc3829877.chain_17	2
scaffold_20	ends_in_intron	10444870	10444870	+	asmbl_26122	none	blat.proc3829883.chain_669	1	STRG.23568.1,blat.proc3829883.chain_668	2
scaffold_20	alt_donor	9965341	9965342	-	asmbl_26992,asmbl_26993	none	STRG.23526.1,blat.proc3829899.chain_551	2	STRG.23526.2,blat.proc3829899.chain_552	2
scaffold_9	alt_acceptor	18390499	18390500	+	asmbl_54639,asmbl_54640	none	STRG.11879.1,blat.proc3829877.chain_595	2	STRG.11879.3	1
scaffold_24	alternate_exon	3349201	3349325	-	asmbl_32810	none	STRG.26515.2,STRG.26515.4,blat.proc3829899.chain_3531	3	STRG.26515.3	1
scaffold_28	alt_acceptor	5391168	5391169	+	asmbl_38282	none	Trinity_GG_16450_c0_g1_i9,blat.proc3829885.chain_2787	2	blat.proc3829885.chain_2786	1
scaffold_17	alternate_exon	11035476	11039046	-	asmbl_19309	none	STRG.20653.2,STRG.20653.3,blat.proc3829897.chain_1562,blat.proc3829897.chain_1607	4	STRG.20653.1	1
scaffold_26	alt_donor	9843403	9843404	+	asmbl_35805	none	blat.proc3829885.chain_1566	1	STRG.28526.2,blat.proc3829885.chain_1563,blat.proc3829885.chain_1565	3
scaffold_18	spliced_intron	1899809	1900625	-	asmbl_19688,asmbl_19689,asmbl_19690,asmbl_19692,asmbl_19694,asmbl_19695,asmbl_19696,asmbl_19699,asmbl_19700,asmbl_19701,asmbl_19703,asmbl_19704,asmbl_19706	none	STRG.21072.10,STRG.21072.2,STRG.21072.3,STRG.21072.4,STRG.21072.9,blat.proc3829897.chain_1890,blat.proc3829897.chain_1892,blat.proc3829897.chain_1897,blat.proc3829897.chain_1898,blat.proc3829897.chain_1900,blat.proc3829897.chain_1901,blat.proc3829897.chain_1902	12	STRG.21072.6,STRG.21072.7,STRG.21072.8,blat.proc3829897.chain_1899	4
scaffold_16	spliced_intron	2215678	2215859	+	asmbl_16912,asmbl_16914	none	STRG.19114.1,Trinity_GG_10490_c0_g1_i2,blat.proc3829879.chain_3745,blat.proc3829879.chain_3746	4	blat.proc3829879.chain_3744	1
scaffold_17	spliced_intron	14874491	14874578	+	asmbl_18547	none	blat.proc3829881.chain_1753	1	STRG.20942.1	1
scaffold_27	retained_exon	314159	314277	-	asmbl_36615,asmbl_36616,asmbl_36617	none	STRG.28538.1,STRG.28538.2,STRG.28538.3	3	blat.proc3829901.chain_1671	1
scaffold_18	retained_exon	1893644	1893652	-	asmbl_19690,asmbl_19696,asmbl_19697,asmbl_19698,asmbl_19703,asmbl_19704,asmbl_19705,asmbl_19706	none	blat.proc3829897.chain_1890,blat.proc3829897.chain_1891,blat.proc3829897.chain_1893,blat.proc3829897.chain_1895,blat.proc3829897.chain_1897,blat.proc3829897.chain_1898,blat.proc3829897.chain_1899,blat.proc3829897.chain_1901,blat.proc3829897.chain_1902	9	STRG.21072.2,STRG.21072.4,STRG.21072.6	3
scaffold_20	alt_acceptor	6983094	6983095	-	asmbl_26780	none	STRG.23247.3	1	STRG.23247.1	1
scaffold_11	retained_intron	8079637	8079771	+	asmbl_5679,asmbl_5680,asmbl_5681	none	Trinity_GG_7572_c0_g1_i1,Trinity_GG_7572_c0_g1_i3,Trinity_GG_7572_c0_g1_i4,blat.proc3829877.chain_2232,blat.proc3829877.chain_2233,blat.proc3829877.chain_2234	6	STRG.13803.1,Trinity_GG_7572_c0_g1_i2,blat.proc3829877.chain_2231	3
scaffold_3	starts_in_intron	8171686	8171686	-	asmbl_38972	none	blat.proc3829887.chain_3154	1	blat.proc3829887.chain_3128	1
scaffold_23	alt_acceptor	3025102	3025103	-	asmbl_31501	none	STRG.25728.1,blat.proc3829899.chain_2854	2	STRG.25728.2	1
scaffold_21	starts_in_intron	7325506	7325506	-	asmbl_27820,asmbl_27822	none	Trinity_GG_30536_c0_g1_i2,blat.proc3829899.chain_1323,blat.proc3829899.chain_1324	3	STRG.24243.1,blat.proc3829899.chain_1322,blat.proc3829899.chain_1325	3
scaffold_12	starts_in_intron	13403998	13403998	-	asmbl_8076	none	Trinity_GG_25519_c0_g1_i2,blat.proc3829893.chain_3624	2	STRG.15208.2,blat.proc3829893.chain_3625	2
scaffold_24	alternate_exon	7153501	7158329	-	asmbl_33001	none	STRG.26744.1,blat.proc3829901.chain_60	2	STRG.26744.2,blat.proc3829901.chain_61	2
scaffold_18	ends_in_intron	9648529	9648529	-	asmbl_20104	none	Trinity_GG_29056_c0_g1_i1,blat.proc3829897.chain_2380	2	STRG.21560.1	1
scaffold_16	retained_intron	5487668	5488014	-	asmbl_16284	none	Trinity_GG_27854_c0_g1_i1,blat.proc3829897.chain_340	2	STRG.19290.1,STRG.19290.2,Trinity_GG_27854_c0_g1_i2,Trinity_GG_27854_c0_g1_i3,blat.proc3829897.chain_338,blat.proc3829897.chain_339	6
scaffold_4	alt_acceptor	12786762	12786763	+	asmbl_43086	none	STRG.4920.1	1	STRG.4920.2,STRG.4920.3,blat.proc3829873.chain_1273,blat.proc3829873.chain_1275	4
scaffold_27	starts_in_intron	2816676	2816676	+	asmbl_36077	none	Trinity_GG_15908_c0_g1_i1,blat.proc3829885.chain_1800	2	STRG.28742.1,STRG.28742.2,STRG.28742.3,STRG.28742.4,blat.proc3829885.chain_1799,blat.proc3829885.chain_1801,blat.proc3829885.chain_1802,blat.proc3829885.chain_1803	8
scaffold_15	spliced_intron	2797848	2798115	+	asmbl_14021	none	blat.proc3829879.chain_2695	1	STRG.18051.1,blat.proc3829879.chain_2696	2
scaffold_3	starts_in_intron	18937820	18937820	+	asmbl_40710	none	blat.proc3829873.chain_426	1	STRG.4063.3	1
scaffold_13	alt_donor	16190411	16190412	-	asmbl_10251	none	STRG.16653.2	1	STRG.16653.1	1
scaffold_13	starts_in_intron	15510175	15510175	+	asmbl_11490	none	blat.proc3829879.chain_1335	1	blat.proc3829879.chain_1334	1
scaffold_6	retained_intron	19076966	19077208	+	asmbl_47817	none	Trinity_GG_4663_c0_g1_i6,blat.proc3829875.chain_868	2	STRG.8572.2,STRG.8572.3,Trinity_GG_4663_c0_g1_i3,blat.proc3829875.chain_866	4
scaffold_8	starts_in_intron	12697575	12697575	+	asmbl_52327	none	blat.proc3829875.chain_2958	1	STRG.10435.1,blat.proc3829875.chain_2957	2
scaffold_12	alt_acceptor	14284089	14284090	+	asmbl_9055	none	STRG.15247.1,blat.proc3829877.chain_3710	2	blat.proc3829877.chain_3709	1
scaffold_19	spliced_intron	2785763	2785796	-	asmbl_21271	none	STRG.21954.2	1	STRG.21954.1,Trinity_GG_29216_c0_g1_i1	2
scaffold_5	retained_exon	10381188	10381380	-	asmbl_45734,asmbl_45735,asmbl_45737,asmbl_45739	none	STRG.6330.1,STRG.6330.2,blat.proc3829889.chain_2440,blat.proc3829889.chain_2441	4	STRG.6330.3	1
scaffold_510	alt_donor	3386	3387	-	asmbl_46466	none	STRG.30341.3	1	STRG.30341.1	1
scaffold_26	retained_intron	3563207	3563305	+	asmbl_35325	none	Trinity_GG_15467_c0_g1_i5,blat.proc3829885.chain_1004	2	STRG.28018.1,STRG.28018.2,STRG.28018.4,STRG.28018.5,blat.proc3829885.chain_1001,blat.proc3829885.chain_1002,blat.proc3829885.chain_1003,blat.proc3829885.chain_1005	8
scaffold_8	alt_acceptor	4239102	4239103	-	asmbl_52758,asmbl_52759	none	STRG.9900.2,blat.proc3829891.chain_1987,blat.proc3829891.chain_1988	3	STRG.9900.1,blat.proc3829891.chain_1990	2
scaffold_149	spliced_intron	113	1567	+	asmbl_13883	none	STRG.30166.2	1	STRG.30166.1,Trinity_GG_16709_c0_g1_i1,Trinity_GG_16709_c1_g1_i1,Trinity_GG_16709_c2_g1_i1,Trinity_GG_16709_c3_g1_i1,blat.proc3829885.chain_3221,blat.proc3829885.chain_3222,blat.proc3829885.chain_3223,blat.proc3829885.chain_3224	9
scaffold_27	retained_exon	9333891	9333995	-	asmbl_37084	none	STRG.29165.2	1	STRG.29165.1,blat.proc3829901.chain_2280	2
scaffold_10	spliced_intron	6870397	6870533	-	asmbl_3423,asmbl_3424,asmbl_3425,asmbl_3427,asmbl_3428	none	STRG.12505.1,blat.proc3829893.chain_990,blat.proc3829893.chain_991,blat.proc3829893.chain_996,blat.proc3829893.chain_997,blat.proc3829893.chain_998,blat.proc3829893.chain_999	7	Trinity_GG_24004_c0_g1_i5,blat.proc3829893.chain_994	2
scaffold_7	ends_in_intron	10267970	10267970	-	asmbl_49925	none	STRG.9189.2,blat.proc3829891.chain_1463	2	STRG.9189.1,blat.proc3829891.chain_1465	2
scaffold_12	alternate_exon	14188526	14188723	-	asmbl_8124	none	STRG.15242.1	1	STRG.15242.2	1
scaffold_19	spliced_intron	5648006	5648276	-	asmbl_21394	none	STRG.22118.1,blat.proc3829897.chain_2823	2	STRG.22118.2	1
scaffold_12	skipped_exon	7591172	7592710	-	asmbl_7727	none	STRG.14825.1,blat.proc3829893.chain_3222	2	STRG.14825.2,blat.proc3829893.chain_3220	2
scaffold_1	spliced_intron	19045433	19045576	+	asmbl_2566	none	STRG.1337.2	1	STRG.1337.3,blat.proc3829871.chain_1392,blat.proc3829871.chain_1393	3
scaffold_18	ends_in_intron	8715342	8715342	+	asmbl_20880	none	Trinity_GG_11914_c0_g1_i1,blat.proc3829881.chain_2535	2	STRG.21524.1,Trinity_GG_11914_c0_g1_i2,blat.proc3829881.chain_2536	3
scaffold_7	retained_intron	18945539	18945573	-	asmbl_50325	none	blat.proc3829891.chain_1884	1	STRG.9685.3	1
scaffold_13	alt_acceptor	5130014	5130015	+	asmbl_10806,asmbl_10808	none	STRG.15801.1,blat.proc3829879.chain_498,blat.proc3829879.chain_499	3	STRG.15801.2,STRG.15801.3,blat.proc3829879.chain_497	3
scaffold_15	spliced_intron	4983626	4984030	-	asmbl_15188	none	STRG.18197.4	1	STRG.18197.5,blat.proc3829895.chain_2987,blat.proc3829895.chain_2988	3
scaffold_14	spliced_intron	9273608	9273885	-	asmbl_13346	none	STRG.17323.2	1	blat.proc3829895.chain_1994,blat.proc3829895.chain_1998	2
scaffold_15	ends_in_intron	11304676	11304676	+	asmbl_14437,asmbl_14438	none	blat.proc3829879.chain_3186,blat.proc3829879.chain_3189	2	STRG.18591.1,blat.proc3829879.chain_3184,blat.proc3829879.chain_3185,blat.proc3829879.chain_3187	4
scaffold_15	spliced_intron	11304106	11304275	+	asmbl_14435,asmbl_14438,asmbl_14439,asmbl_14440	none	STRG.18591.1,Trinity_GG_10200_c0_g1_i4,blat.proc3829879.chain_3184,blat.proc3829879.chain_3185,blat.proc3829879.chain_3186,blat.proc3829879.chain_3187	6	Trinity_GG_10200_c0_g1_i5,blat.proc3829879.chain_3189	2
scaffold_22	spliced_intron	224610	224758	-	asmbl_29837,asmbl_29838,asmbl_29842	none	STRG.24671.1,STRG.24671.3,Trinity_GG_30815_c0_g1_i1,Trinity_GG_30815_c0_g1_i3,blat.proc3829899.chain_1813,blat.proc3829899.chain_1816	6	STRG.24671.2,Trinity_GG_30815_c0_g1_i2,Trinity_GG_30815_c0_g1_i5,blat.proc3829899.chain_1814,blat.proc3829899.chain_1815	5
scaffold_25	alternate_exon	10081458	10081645	+	asmbl_33847	none	STRG.27792.1,Trinity_GG_15338_c0_g1_i1,blat.proc3829885.chain_809	3	STRG.27792.2	1
scaffold_2	alt_donor	17971546	17971547	+	asmbl_25242,asmbl_25243,asmbl_25244,asmbl_25245	none	STRG.2687.1,blat.proc3829871.chain_2900,blat.proc3829871.chain_2901,blat.proc3829871.chain_2902,blat.proc3829871.chain_2903	5	STRG.2687.2	1
scaffold_24	spliced_intron	6297525	6297691	+	asmbl_32307	none	STRG.26668.2,Trinity_GG_14747_c0_g1_i2,blat.proc3829883.chain_3578	3	STRG.26668.3,Trinity_GG_14747_c0_g1_i3,blat.proc3829883.chain_3576	3
scaffold_19	starts_in_intron	6407689	6407689	-	asmbl_21422	none	STRG.22157.2,blat.proc3829897.chain_2845	2	STRG.22157.1,STRG.22157.3,blat.proc3829897.chain_2842,blat.proc3829897.chain_2843	4
scaffold_7	ends_in_intron	8383111	8383111	+	asmbl_50872	none	blat.proc3829875.chain_1492	1	STRG.9066.1,blat.proc3829875.chain_1491	2
scaffold_16	ends_in_intron	11953671	11953671	+	asmbl_17423	none	Trinity_GG_10805_c0_g1_i1,blat.proc3829881.chain_580	2	STRG.19712.1,STRG.19712.3,Trinity_GG_10805_c0_g1_i3,blat.proc3829881.chain_578	4
scaffold_20	starts_in_intron	5952745	5952745	-	asmbl_26727	none	blat.proc3829899.chain_162	1	STRG.23191.1,blat.proc3829899.chain_161	2
scaffold_6	alt_donor	1497143	1497144	+	asmbl_46665	none	STRG.7184.2,blat.proc3829873.chain_3356	2	STRG.7184.3,Trinity_GG_3973_c0_g1_i1,blat.proc3829873.chain_3354	3
scaffold_16	starts_in_intron	8305708	8305708	-	asmbl_16418	none	blat.proc3829897.chain_499	1	STRG.19457.1,blat.proc3829897.chain_498	2
scaffold_2	spliced_intron	950718	951105	+	asmbl_24187,asmbl_24188,asmbl_24189	none	STRG.1574.1,STRG.1574.2,STRG.1574.3	3	STRG.1574.4,blat.proc3829871.chain_1647	2
scaffold_28	retained_intron	2651234	2651332	+	asmbl_38090	none	STRG.29436.1,Trinity_GG_16344_c2_g1_i4,Trinity_GG_16344_c2_g2_i1,Trinity_GG_16344_c2_g2_i3,blat.proc3829885.chain_2580	5	STRG.29436.2	1
scaffold_28	alt_acceptor	155670	155671	-	asmbl_37222	none	STRG.29224.2	1	STRG.29224.1	1
scaffold_12	retained_intron	7670363	7670489	+	asmbl_8750,asmbl_8752	none	Trinity_GG_8201_c0_g1_i5,blat.proc3829877.chain_3333,blat.proc3829877.chain_3334	3	STRG.14838.1,STRG.14838.2,Trinity_GG_8201_c0_g1_i4,blat.proc3829877.chain_3335,blat.proc3829877.chain_3336	5
scaffold_16	skipped_exon	8711335	8712234	-	asmbl_16432,asmbl_16433	none	STRG.19484.1,STRG.19484.3,blat.proc3829897.chain_508,blat.proc3829897.chain_509	4	STRG.19484.2,blat.proc3829897.chain_510,blat.proc3829897.chain_511	3
scaffold_16	spliced_intron	12019045	12019148	+	asmbl_17428,asmbl_17429,asmbl_17431	none	STRG.19717.1,STRG.19717.3,Trinity_GG_10822_c0_g1_i3,blat.proc3829881.chain_608,blat.proc3829881.chain_609	5	Trinity_GG_10822_c0_g1_i4,blat.proc3829881.chain_610	2
scaffold_23	alt_acceptor	7941282	7941283	-	asmbl_31782	none	STRG.26079.2	1	STRG.26079.3	1
scaffold_6	skipped_exon	16620658	16622847	-	asmbl_49085	none	STRG.8381.3,blat.proc3829891.chain_700	2	STRG.8381.1,blat.proc3829891.chain_702	2
scaffold_22	alt_acceptor	728075	728076	+	asmbl_29179,asmbl_29180	none	STRG.24711.1,STRG.24711.3,Trinity_GG_13664_c0_g1_i1,blat.proc3829883.chain_1767	4	STRG.24711.2	1
scaffold_17	spliced_intron	4005466	4005564	+	asmbl_17888	none	STRG.20150.1,blat.proc3829881.chain_1002	2	blat.proc3829881.chain_1000	1
scaffold_500	spliced_intron	746	1074	+	asmbl_46443,asmbl_46444,asmbl_46446,asmbl_46448,asmbl_46449,asmbl_46450,asmbl_46452	none	STRG.30347.1,STRG.30347.2,STRG.30347.3,STRG.30347.4,blat.proc3829885.chain_3365,blat.proc3829885.chain_3366,blat.proc3829885.chain_3369	7	blat.proc3829885.chain_3364,blat.proc3829885.chain_3367,blat.proc3829885.chain_3368	3
scaffold_11	ends_in_intron	9833355	9833355	+	asmbl_5867	none	STRG.13996.3,blat.proc3829877.chain_2510	2	STRG.13996.1,STRG.13996.2,STRG.13996.4,blat.proc3829877.chain_2505,blat.proc3829877.chain_2508,blat.proc3829877.chain_2512,blat.proc3829877.chain_2514	7
scaffold_2	spliced_intron	897724	898862	+	asmbl_24165,asmbl_24166,asmbl_24169	none	STRG.1568.1,Trinity_GG_900_c0_g1_i4,Trinity_GG_900_c0_g1_i5,blat.proc3829871.chain_1642,blat.proc3829871.chain_1644	5	STRG.1568.2,Trinity_GG_900_c0_g1_i3,Trinity_GG_900_c0_g1_i6,blat.proc3829871.chain_1640,blat.proc3829871.chain_1643	5
scaffold_18	starts_in_intron	6321185	6321185	+	asmbl_20704	none	blat.proc3829881.chain_2317	1	STRG.21356.1	1
scaffold_1	retained_exon	3270374	3270496	-	asmbl_143	none	STRG.199.3	1	STRG.199.1,blat.proc3829887.chain_97,blat.proc3829887.chain_99	3
scaffold_13	starts_in_intron	3734307	3734307	+	asmbl_10712	none	STRG.15686.3	1	STRG.15686.1,STRG.15686.2,Trinity_GG_8631_c0_g1_i4,Trinity_GG_8631_c0_g1_i6,blat.proc3829879.chain_389,blat.proc3829879.chain_393,blat.proc3829879.chain_394,blat.proc3829879.chain_395,blat.proc3829879.chain_396	9
scaffold_8	alt_donor	17628758	17628759	-	asmbl_53483	none	STRG.10673.1,blat.proc3829891.chain_2835	2	STRG.10673.2	1
scaffold_15	retained_intron	12000469	12000658	-	asmbl_15566,asmbl_15568	none	Trinity_GG_27487_c0_g1_i4,blat.proc3829895.chain_3419,blat.proc3829895.chain_3421	3	STRG.18630.1,Trinity_GG_27487_c0_g1_i3,blat.proc3829895.chain_3415	3
scaffold_356	alt_acceptor	3912	3913	+	asmbl_40994	none	STRG.30273.1	1	STRG.30273.2	1
scaffold_21	alt_acceptor	7503983	7503984	-	asmbl_27849,asmbl_27850	none	STRG.24269.1,blat.proc3829899.chain_1354,blat.proc3829899.chain_1355,blat.proc3829899.chain_1357	4	STRG.24269.2,STRG.24269.3	2
scaffold_21	spliced_intron	3174719	3174850	+	asmbl_28479,asmbl_28480,asmbl_28481,asmbl_28482,asmbl_28489	none	STRG.23945.1,STRG.23945.2,STRG.23945.3,STRG.23945.6,blat.proc3829883.chain_1058,blat.proc3829883.chain_1060	6	blat.proc3829883.chain_1059	1
scaffold_3	ends_in_intron	16078872	16078872	-	asmbl_39427	none	blat.proc3829887.chain_3686	1	STRG.3885.1,STRG.3885.2,STRG.3885.3,STRG.3885.4,blat.proc3829887.chain_3684,blat.proc3829887.chain_3685	6
scaffold_21	alt_donor	257554	257555	-	asmbl_27315,asmbl_27318,asmbl_27323	none	STRG.23718.3,STRG.23718.6,blat.proc3829899.chain_782,blat.proc3829899.chain_785,blat.proc3829899.chain_786	5	STRG.23718.2,STRG.23718.4,STRG.23718.5,STRG.23718.8,blat.proc3829899.chain_781,blat.proc3829899.chain_787,blat.proc3829899.chain_788	7
scaffold_18	spliced_intron	1895347	1896928	-	asmbl_19690,asmbl_19704,asmbl_19705,asmbl_19706	none	blat.proc3829897.chain_1898,blat.proc3829897.chain_1899,blat.proc3829897.chain_1901,blat.proc3829897.chain_1902	4	STRG.21072.10,STRG.21072.2,STRG.21072.3,STRG.21072.7,STRG.21072.8,STRG.21072.9,blat.proc3829897.chain_1890,blat.proc3829897.chain_1891,blat.proc3829897.chain_1893,blat.proc3829897.chain_1895,blat.proc3829897.chain_1897	11
scaffold_16	alt_donor	7587394	7587395	-	asmbl_16364	none	STRG.19401.2,Trinity_GG_27862_c0_g1_i1,blat.proc3829897.chain_351	3	STRG.19401.1,Trinity_GG_27862_c0_g1_i2,blat.proc3829897.chain_350	3
scaffold_5	starts_in_intron	4629174	4629174	-	asmbl_45351	none	blat.proc3829889.chain_1979	1	STRG.5909.1,blat.proc3829889.chain_1980	2
scaffold_1	alt_acceptor	9516100	9516101	-	asmbl_550	none	STRG.644.1	1	blat.proc3829887.chain_520	1
scaffold_7	starts_in_intron	8587316	8587316	+	asmbl_50907	none	blat.proc3829875.chain_1538	1	STRG.9076.1	1
scaffold_24	retained_exon	5290242	5290375	-	asmbl_32873	none	STRG.26597.1,blat.proc3829899.chain_3660	2	STRG.26597.2	1
scaffold_8	starts_in_intron	14571301	14571301	+	asmbl_52374	none	STRG.10535.4,blat.proc3829875.chain_3055	2	STRG.10535.1,STRG.10535.2,STRG.10535.3,blat.proc3829875.chain_3054,blat.proc3829875.chain_3057,blat.proc3829875.chain_3058	6
scaffold_11	spliced_intron	1983670	1983757	-	asmbl_6438	none	STRG.13349.2,blat.proc3829893.chain_1815	2	blat.proc3829893.chain_1816	1
scaffold_27	retained_exon	7522112	7522151	+	asmbl_36424	none	STRG.29096.4	1	STRG.29096.1,STRG.29096.2,blat.proc3829885.chain_2227	3
scaffold_1517	alternate_exon	387	501	-	asmbl_15968	none	STRG.30587.1	1	STRG.30587.2	1
scaffold_13	starts_in_intron	7266076	7266076	-	asmbl_9832	none	blat.proc3829895.chain_810	1	STRG.16009.1,blat.proc3829895.chain_807,blat.proc3829895.chain_808,blat.proc3829895.chain_809,blat.proc3829895.chain_811	5
scaffold_8	retained_intron	16230070	16230333	+	asmbl_52430	none	STRG.10606.3,Trinity_GG_5907_c0_g1_i3,blat.proc3829875.chain_3129	3	STRG.10606.1,STRG.10606.2,Trinity_GG_5907_c0_g1_i2,Trinity_GG_5907_c0_g1_i6,blat.proc3829875.chain_3128,blat.proc3829875.chain_3131	6
scaffold_21	alt_donor	3015237	3015238	+	asmbl_28455	none	STRG.23914.1,blat.proc3829883.chain_1067	2	STRG.23914.2,blat.proc3829883.chain_1069,blat.proc3829883.chain_1070,blat.proc3829883.chain_1071	4
scaffold_27	starts_in_intron	2823021	2823021	-	asmbl_36812	none	blat.proc3829901.chain_1859	1	STRG.28744.1,blat.proc3829901.chain_1860,blat.proc3829901.chain_1861,blat.proc3829901.chain_1862	4
scaffold_18	retained_intron	1499817	1499941	+	asmbl_20380,asmbl_20381	none	Trinity_GG_11574_c0_g1_i3,blat.proc3829881.chain_1906,blat.proc3829881.chain_1907	3	STRG.21023.1,Trinity_GG_11574_c0_g1_i2,blat.proc3829881.chain_1905	3
scaffold_22	spliced_intron	7416523	7416632	-	asmbl_30160	none	STRG.25062.2	1	STRG.25062.1,blat.proc3829899.chain_2148,blat.proc3829899.chain_2151	3
scaffold_4	alt_acceptor	19587594	19587595	-	asmbl_42205	none	STRG.5543.2,blat.proc3829889.chain_1641	2	STRG.5543.1,blat.proc3829889.chain_1639	2
scaffold_28	starts_in_intron	5023870	5023870	+	asmbl_38259	none	STRG.29640.3,Trinity_GG_16373_c2_g1_i2,blat.proc3829885.chain_2640	3	STRG.29640.1,STRG.29640.2,blat.proc3829885.chain_2641,blat.proc3829885.chain_2642,blat.proc3829885.chain_2643	5
scaffold_17	ends_in_intron	2731220	2731220	-	asmbl_18822	none	Trinity_GG_28270_c0_g1_i2,blat.proc3829897.chain_1016	2	STRG.20060.1,blat.proc3829897.chain_1015	2
scaffold_14	alternate_exon	14764657	14764751	+	asmbl_12548	none	STRG.17718.2,Trinity_GG_9717_c0_g1_i2,blat.proc3829879.chain_2356	3	STRG.17718.1,Trinity_GG_9717_c0_g1_i1,blat.proc3829879.chain_2357	3
scaffold_17	alt_donor	7023727	7023728	+	asmbl_18016	none	STRG.20355.1	1	STRG.20355.2	1
scaffold_2	spliced_intron	19892061	19892133	-	asmbl_23895	none	STRG.2839.1	1	blat.proc3829887.chain_2662	1
scaffold_22	alternate_exon	9900290	9900360	-	asmbl_30339	none	STRG.25313.2	1	STRG.25313.1,blat.proc3829899.chain_2379	2
scaffold_6	alt_donor	16888533	16888534	-	asmbl_49112	none	Trinity_GG_21814_c0_g1_i2,blat.proc3829891.chain_740	2	STRG.8402.1,STRG.8402.2,Trinity_GG_21814_c0_g1_i3,Trinity_GG_21814_c0_g1_i5,blat.proc3829891.chain_737,blat.proc3829891.chain_738	6
scaffold_4	spliced_intron	10872473	10872693	-	asmbl_41604,asmbl_41605	none	STRG.4807.1,blat.proc3829889.chain_807,blat.proc3829889.chain_809	3	blat.proc3829889.chain_806,blat.proc3829889.chain_808	2
scaffold_17	retained_intron	793736	793904	+	asmbl_17703	none	Trinity_GG_10882_c0_g1_i2,blat.proc3829881.chain_712	2	STRG.19917.1,STRG.19917.2	2
scaffold_27	starts_in_intron	974643	974643	+	asmbl_35933	none	Trinity_GG_15816_c0_g1_i1,blat.proc3829885.chain_1621	2	STRG.28576.1,STRG.28576.2,Trinity_GG_15816_c0_g1_i5,Trinity_GG_15816_c0_g1_i6,blat.proc3829885.chain_1616,blat.proc3829885.chain_1617	6
scaffold_2	retained_exon	2455200	2455394	-	asmbl_22921	none	STRG.1690.3	1	STRG.1690.2,blat.proc3829887.chain_1528	2
scaffold_23	retained_intron	5303321	5303517	+	asmbl_30853,asmbl_30854,asmbl_30855,asmbl_30856	none	STRG.25887.1,STRG.25887.2,STRG.25887.3,Trinity_GG_14289_c0_g1_i1,Trinity_GG_14289_c0_g1_i2,Trinity_GG_14289_c0_g1_i3,Trinity_GG_14289_c0_g1_i5,blat.proc3829883.chain_2768,blat.proc3829883.chain_2769,blat.proc3829883.chain_2771,blat.proc3829883.chain_2772	11	Trinity_GG_14289_c0_g1_i4,blat.proc3829883.chain_2770	2
scaffold_16	starts_in_intron	789410	789410	+	asmbl_16840	none	blat.proc3829879.chain_3588	1	STRG.19046.1,STRG.19046.2,STRG.19046.3,blat.proc3829879.chain_3590,blat.proc3829879.chain_3591,blat.proc3829879.chain_3593	6
scaffold_2	ends_in_intron	7781989	7781989	+	asmbl_24610	none	STRG.2076.3,blat.proc3829871.chain_2209	2	STRG.2076.1,STRG.2076.2,STRG.2076.4,STRG.2076.5,STRG.2076.6,blat.proc3829871.chain_2202,blat.proc3829871.chain_2203,blat.proc3829871.chain_2205,blat.proc3829871.chain_2207,blat.proc3829871.chain_2208,blat.proc3829871.chain_2211,blat.proc3829871.chain_2213	12
scaffold_19	alt_acceptor	10240087	10240088	-	asmbl_21555	none	STRG.22393.2	1	STRG.22393.1,blat.proc3829897.chain_3098	2
scaffold_8	retained_exon	4340618	4340885	+	asmbl_51822	none	STRG.9912.2,blat.proc3829875.chain_2390	2	STRG.9912.1,blat.proc3829875.chain_2389	2
scaffold_6	alternate_exon	12495507	12499891	+	asmbl_47345	none	STRG.8005.2,Trinity_GG_4358_c0_g2_i1,Trinity_GG_4358_c0_g2_i2,blat.proc3829875.chain_350,blat.proc3829875.chain_351	5	STRG.8005.3,blat.proc3829875.chain_349	2
scaffold_24	spliced_intron	6310450	6310978	+	asmbl_32309,asmbl_32310,asmbl_32311	none	STRG.26676.1,STRG.26676.2,STRG.26676.4,blat.proc3829883.chain_3587	4	blat.proc3829883.chain_3586	1
scaffold_12	spliced_intron	4549036	4549126	-	asmbl_7534	none	STRG.14614.1,blat.proc3829893.chain_2962	2	STRG.14614.2	1
scaffold_14	alt_acceptor	917457	917458	+	asmbl_11753	none	STRG.16748.1,blat.proc3829879.chain_1453	2	STRG.16748.2,STRG.16748.3	2
scaffold_6	starts_in_intron	3155650	3155650	-	asmbl_48173	none	blat.proc3829889.chain_3323	1	STRG.7312.1,blat.proc3829889.chain_3322	2
scaffold_21	alternate_exon	7497236	7497277	-	asmbl_27848	none	STRG.24266.2	1	STRG.24266.1,blat.proc3829899.chain_1286	2
scaffold_16	spliced_intron	6216174	6216261	-	asmbl_16328	none	STRG.19377.1,blat.proc3829897.chain_369	2	blat.proc3829897.chain_370	1
scaffold_17	skipped_exon	7959936	7960883	-	asmbl_19104	none	STRG.20403.1,blat.proc3829897.chain_1374	2	STRG.20403.2,blat.proc3829897.chain_1373	2
scaffold_13	retained_intron	10226230	10226249	-	asmbl_10015,asmbl_10016,asmbl_10017	none	STRG.16243.1,STRG.16243.2,STRG.16243.4	3	STRG.16243.3	1
scaffold_13	spliced_intron	6949079	6949233	-	asmbl_9778	none	STRG.15968.3	1	STRG.15968.1,STRG.15968.6,Trinity_GG_25972_c0_g1_i5	3
scaffold_26	retained_intron	3432400	3432532	+	asmbl_35312	none	blat.proc3829885.chain_901	1	STRG.28008.1,blat.proc3829885.chain_900,blat.proc3829885.chain_902,blat.proc3829885.chain_903	4
scaffold_11	alternate_exon	3709231	3709601	-	asmbl_6539	none	Trinity_GG_24560_c1_g1_i1,blat.proc3829893.chain_1939	2	STRG.13480.3	1
scaffold_322	alt_acceptor	5793	5794	-	asmbl_40911	none	STRG.30255.2	1	STRG.30255.1	1
scaffold_8	retained_exon	16397528	16397566	-	asmbl_53389	none	STRG.10619.2,blat.proc3829891.chain_2687	2	blat.proc3829891.chain_2683	1
scaffold_20	starts_in_intron	7858452	7858452	-	asmbl_26857	none	STRG.23322.4	1	STRG.23322.1,STRG.23322.2,STRG.23322.3,blat.proc3829899.chain_376,blat.proc3829899.chain_377,blat.proc3829899.chain_378	6
scaffold_18	alternate_exon	2004590	2004667	-	asmbl_19724	none	STRG.21099.1,blat.proc3829897.chain_1987	2	STRG.21099.2	1
scaffold_7	alt_donor	16905374	16905375	-	asmbl_50243	none	STRG.9590.2	1	STRG.9590.1	1
scaffold_1	spliced_intron	9294832	9294940	+	asmbl_1966,asmbl_1968	none	STRG.626.1,Trinity_GG_370_c0_g1_i1,Trinity_GG_370_c0_g1_i2,blat.proc3829871.chain_642,blat.proc3829871.chain_645	5	STRG.626.2	1
scaffold_10	alternate_exon	11198791	11199165	-	asmbl_3677	none	STRG.12776.1,blat.proc3829893.chain_1304	2	STRG.12776.2	1
scaffold_27	skipped_exon	6194706	6196554	+	asmbl_36335,asmbl_36336	none	STRG.28993.1,STRG.28993.4	2	STRG.28993.5	1
scaffold_19	starts_in_intron	9456245	9456245	+	asmbl_22394	none	STRG.22365.4	1	STRG.22365.1,STRG.22365.3,blat.proc3829881.chain_3306	3
scaffold_17	ends_in_intron	8830250	8830250	-	asmbl_19170,asmbl_19171	none	STRG.20484.2,blat.proc3829897.chain_1370	2	STRG.20484.1,blat.proc3829897.chain_1369	2
scaffold_12	retained_exon	7422560	7422595	-	asmbl_7712	none	STRG.14807.1,blat.proc3829893.chain_3200	2	STRG.14807.2,blat.proc3829893.chain_3199	2
scaffold_5	alternate_exon	18271011	18271081	+	asmbl_44900	none	STRG.6958.2,Trinity_GG_3824_c0_g1_i1,blat.proc3829873.chain_3094	3	STRG.6958.1,Trinity_GG_3824_c0_g1_i2,blat.proc3829873.chain_3093	3
scaffold_23	starts_in_intron	1141733	1141733	-	asmbl_31348	none	blat.proc3829899.chain_2603	1	STRG.25575.1,blat.proc3829899.chain_2599,blat.proc3829899.chain_2600,blat.proc3829899.chain_2601	4
scaffold_23	alt_acceptor	360402	360403	-	asmbl_31313	none	STRG.25543.5	1	STRG.25543.1,STRG.25543.3,STRG.25543.4,Trinity_GG_31299_c0_g1_i4,blat.proc3829899.chain_2649,blat.proc3829899.chain_2650,blat.proc3829899.chain_2652,blat.proc3829899.chain_2653,blat.proc3829899.chain_2654,blat.proc3829899.chain_2655,blat.proc3829899.chain_2656	11
scaffold_1	spliced_intron	8645316	8645414	-	asmbl_473,asmbl_474,asmbl_483	none	STRG.572.1,STRG.572.2,blat.proc3829887.chain_454,blat.proc3829887.chain_456,blat.proc3829887.chain_458	5	STRG.572.3,blat.proc3829887.chain_457	2
scaffold_13	alternate_exon	7014447	7014556	-	asmbl_9793	none	blat.proc3829895.chain_657	1	STRG.15993.1,blat.proc3829895.chain_656	2
scaffold_6	alt_acceptor	12654088	12654089	+	asmbl_47364	none	STRG.8019.1,blat.proc3829875.chain_366	2	blat.proc3829875.chain_365	1
scaffold_13	alternate_exon	15510812	15511198	+	asmbl_11493	none	STRG.16580.3	1	STRG.16580.1,blat.proc3829879.chain_1334,blat.proc3829879.chain_1335	3
scaffold_11	alternate_exon	9184717	9184874	-	asmbl_6902	none	STRG.13951.1,Trinity_GG_24785_c0_g1_i2,blat.proc3829893.chain_2345	3	STRG.13951.2,Trinity_GG_24785_c0_g1_i1,Trinity_GG_24785_c0_g2_i1,blat.proc3829893.chain_2344	4
scaffold_15	spliced_intron	7254010	7254095	-	asmbl_15306	none	STRG.18313.1,blat.proc3829895.chain_3059	2	Trinity_GG_27299_c0_g1_i2,blat.proc3829895.chain_3058	2
scaffold_10	alternate_exon	2041914	2042024	-	asmbl_3013	none	STRG.12049.1,blat.proc3829893.chain_505	2	STRG.12049.2	1
scaffold_5	spliced_intron	16318561	16318674	+	asmbl_44743,asmbl_44745	none	STRG.6820.1,blat.proc3829873.chain_2898,blat.proc3829873.chain_2899	3	blat.proc3829873.chain_2901	1
scaffold_28	retained_intron	4440911	4440975	-	asmbl_37530	none	STRG.29605.1,blat.proc3829901.chain_2734	2	STRG.29605.2,blat.proc3829901.chain_2735	2
scaffold_14	starts_in_intron	8335050	8335050	+	asmbl_12206	none	blat.proc3829879.chain_1980	1	STRG.17242.1,STRG.17242.2,blat.proc3829879.chain_1981	3
scaffold_2	spliced_intron	13064373	13064567	+	asmbl_24844,asmbl_24845,asmbl_24846	none	STRG.2330.1,STRG.2330.2,blat.proc3829871.chain_2456,blat.proc3829871.chain_2457,blat.proc3829871.chain_2458,blat.proc3829871.chain_2461	6	Trinity_GG_1323_c0_g1_i2,Trinity_GG_1323_c0_g1_i8,blat.proc3829871.chain_2460,blat.proc3829871.chain_2462	4
scaffold_10	spliced_intron	5862111	5862269	-	asmbl_3315,asmbl_3318	none	STRG.12401.3,Trinity_GG_23943_c1_g1_i3,blat.proc3829893.chain_874	3	STRG.12401.2,Trinity_GG_23943_c1_g1_i1,blat.proc3829893.chain_875	3
scaffold_7	starts_in_intron	12541399	12541399	-	asmbl_50057,asmbl_50059	none	STRG.9352.3,blat.proc3829891.chain_1569	2	STRG.9352.1,STRG.9352.4,STRG.9352.5,blat.proc3829891.chain_1570,blat.proc3829891.chain_1571	5
scaffold_28	retained_intron	6515507	6515534	-	asmbl_37672,asmbl_37674	none	STRG.29726.1,STRG.29726.3	2	STRG.29726.2	1
scaffold_3	alt_donor	14370842	14370843	-	asmbl_39317	none	STRG.3776.2	1	STRG.3776.1,Trinity_GG_19092_c0_g1_i1,blat.proc3829887.chain_3552	3
scaffold_5	spliced_intron	5026994	5027082	-	asmbl_45408,asmbl_45410	none	STRG.5947.1,blat.proc3829889.chain_2013,blat.proc3829891.chain_1998	3	Trinity_GG_22498_c0_g1_i1	1
scaffold_13	ends_in_intron	5878096	5878096	+	asmbl_10892	none	blat.proc3829879.chain_594	1	STRG.15885.1,blat.proc3829879.chain_593	2
scaffold_7	spliced_intron	12412680	12412840	+	asmbl_51138	none	STRG.9333.2,Trinity_GG_5182_c0_g1_i1,blat.proc3829875.chain_1790	3	STRG.9333.1,Trinity_GG_5182_c0_g1_i2,blat.proc3829875.chain_1791	3
scaffold_22	skipped_exon	9718010	9720833	+	asmbl_29599	none	STRG.25292.1,blat.proc3829883.chain_2231	2	STRG.25292.2,STRG.25292.3,STRG.25292.4	3
scaffold_21	starts_in_intron	5774359	5774359	-	asmbl_27724	none	blat.proc3829899.chain_1197	1	STRG.24099.2,STRG.24099.3,blat.proc3829899.chain_1199,blat.proc3829899.chain_1202	4
scaffold_23	ends_in_intron	356089	356089	-	asmbl_31316,asmbl_31317,asmbl_31318	none	STRG.25543.2,blat.proc3829899.chain_2653,blat.proc3829899.chain_2655	3	STRG.25543.1,blat.proc3829899.chain_2649,blat.proc3829899.chain_2650,blat.proc3829899.chain_2652,blat.proc3829899.chain_2656	5
scaffold_27	starts_in_intron	7240458	7240458	-	asmbl_37053	none	blat.proc3829901.chain_2208	1	STRG.29059.1,blat.proc3829901.chain_2207	2
scaffold_20	spliced_intron	4562562	4562796	+	asmbl_25748	none	STRG.23121.1,Trinity_GG_12748_c0_g1_i2,blat.proc3829883.chain_231	3	Trinity_GG_12748_c0_g1_i1,blat.proc3829883.chain_232	2
scaffold_12	starts_in_intron	6514119	6514119	+	asmbl_8652	none	Trinity_GG_8136_c1_g1_i1,blat.proc3829877.chain_3216	2	STRG.14735.1,blat.proc3829877.chain_3217	2
scaffold_2	alt_acceptor	8874367	8874368	+	asmbl_24690	none	STRG.2139.4	1	STRG.2139.2,STRG.2139.3,blat.proc3829871.chain_2261,blat.proc3829871.chain_2262	4
scaffold_3	ends_in_intron	8170293	8170293	-	asmbl_38971	none	Trinity_GG_18833_c12_g1_i1,blat.proc3829887.chain_3152	2	blat.proc3829887.chain_3128	1
scaffold_10	spliced_intron	8896299	8896584	-	asmbl_3534,asmbl_3535,asmbl_3536,asmbl_3537,asmbl_3538,asmbl_3539,asmbl_3540,asmbl_3541,asmbl_3542	none	STRG.12629.1,blat.proc3829893.chain_1127,blat.proc3829893.chain_1130,blat.proc3829893.chain_1131,blat.proc3829893.chain_1132,blat.proc3829893.chain_1133,blat.proc3829893.chain_1134,blat.proc3829893.chain_1135,blat.proc3829893.chain_1136	9	blat.proc3829893.chain_1125,blat.proc3829893.chain_1129	2
scaffold_9	spliced_intron	6904964	6905139	-	asmbl_55062	none	Trinity_GG_23218_c0_g1_i5,blat.proc3829891.chain_3339	2	Trinity_GG_23218_c0_g1_i4,blat.proc3829891.chain_3338	2
scaffold_8	alt_acceptor	14147795	14147796	-	asmbl_53304	none	STRG.10514.1,blat.proc3829891.chain_2651	2	STRG.10514.2,STRG.10514.3,blat.proc3829891.chain_2650	3
scaffold_5	starts_in_intron	13801164	13801164	-	asmbl_45940	none	blat.proc3829889.chain_2651	1	STRG.6592.1,STRG.6592.2,blat.proc3829889.chain_2652,blat.proc3829889.chain_2653,blat.proc3829889.chain_2654,blat.proc3829889.chain_2655	6
scaffold_23	alt_acceptor	5620024	5620025	-	asmbl_31647	none	Trinity_GG_31507_c0_g1_i1,blat.proc3829899.chain_3023	2	STRG.25917.2,blat.proc3829899.chain_3024,blat.proc3829899.chain_3026	3
scaffold_13	spliced_intron	16048875	16048914	+	asmbl_11526	none	blat.proc3829879.chain_1379	1	STRG.16628.3	1
scaffold_25	alt_donor	3820182	3820183	-	asmbl_34142	none	Trinity_GG_32309_c0_g1_i1,blat.proc3829901.chain_621	2	Trinity_GG_32309_c0_g1_i3,blat.proc3829901.chain_623	2
scaffold_5	alt_acceptor	10131498	10131499	+	asmbl_44322,asmbl_44323	none	STRG.6306.2,Trinity_GG_3405_c0_g1_i1,Trinity_GG_3405_c0_g1_i2,blat.proc3829873.chain_2385,blat.proc3829873.chain_2386	5	STRG.6306.1	1
scaffold_7	alt_acceptor	280390	280391	+	asmbl_50431	none	STRG.8593.1	1	STRG.8593.2,Trinity_GG_4731_c0_g1_i3,Trinity_GG_4731_c0_g1_i5,blat.proc3829875.chain_1013	4
scaffold_13	alt_acceptor	734147	734148	+	asmbl_10475	none	STRG.15444.1,blat.proc3829879.chain_108	2	STRG.15444.2,STRG.15444.3	2
scaffold_14	starts_in_intron	1713636	1713636	-	asmbl_12889	none	Trinity_GG_26422_c0_g1_i1,blat.proc3829895.chain_1504	2	STRG.16788.1	1
scaffold_23	skipped_exon	2164190	2164645	-	asmbl_31419	none	STRG.25669.1	1	STRG.25669.7	1
scaffold_9	alt_donor	4849312	4849313	+	asmbl_53943	none	STRG.11050.1,blat.proc3829875.chain_3510	2	Trinity_GG_6147_c0_g1_i2,blat.proc3829875.chain_3509	2
scaffold_10	starts_in_intron	6883922	6883922	-	asmbl_3436	none	Trinity_GG_24005_c0_g1_i2,blat.proc3829893.chain_1002	2	STRG.12504.1,Trinity_GG_24005_c0_g1_i1,blat.proc3829893.chain_1000	3
scaffold_1	retained_intron	13433544	13433580	-	asmbl_808	none	STRG.957.2,blat.proc3829887.chain_841	2	STRG.957.1	1
scaffold_1	alt_donor	9254137	9254138	+	asmbl_1960	none	STRG.616.3,Trinity_GG_391_c0_g1_i1,blat.proc3829871.chain_680	3	STRG.616.4,Trinity_GG_391_c0_g1_i3,blat.proc3829871.chain_683	3
scaffold_8	alt_acceptor	18247102	18247103	+	asmbl_52535	none	STRG.10722.1,Trinity_GG_5946_c0_g1_i1,blat.proc3829875.chain_3210	3	Trinity_GG_5946_c0_g1_i2,blat.proc3829875.chain_3209	2
scaffold_20	starts_in_intron	5924005	5924005	-	asmbl_26709	none	blat.proc3829899.chain_147	1	STRG.23184.2,STRG.23184.3,blat.proc3829899.chain_144,blat.proc3829899.chain_145,blat.proc3829899.chain_148,blat.proc3829899.chain_149,blat.proc3829899.chain_150	7
scaffold_18	retained_intron	1500051	1500145	+	asmbl_20380	none	Trinity_GG_11574_c0_g1_i3,blat.proc3829881.chain_1906	2	STRG.21023.1,Trinity_GG_11574_c0_g1_i2,blat.proc3829881.chain_1905,blat.proc3829881.chain_1907	4
scaffold_10	retained_intron	12895006	12895119	-	asmbl_3744	none	blat.proc3829893.chain_1337	1	STRG.12877.1,blat.proc3829893.chain_1336,blat.proc3829893.chain_1339	3
scaffold_23	retained_intron	10938169	10938227	-	asmbl_31893	none	Trinity_GG_31688_c0_g1_i4	1	blat.proc3829899.chain_3332,blat.proc3829899.chain_3333	2
scaffold_14	alternate_exon	15115487	15115549	+	asmbl_12549	none	Trinity_GG_9754_c0_g1_i8,blat.proc3829879.chain_2407	2	blat.proc3829879.chain_2411	1
scaffold_12	spliced_intron	10186262	10186424	-	asmbl_7858,asmbl_7859,asmbl_7860,asmbl_7861,asmbl_7862,asmbl_7864,asmbl_7866	none	STRG.14979.1,STRG.14979.2,STRG.14979.4,STRG.14979.5,STRG.14979.6,blat.proc3829893.chain_3400,blat.proc3829893.chain_3401,blat.proc3829893.chain_3402,blat.proc3829893.chain_3404,blat.proc3829893.chain_3405	10	STRG.14979.3,blat.proc3829893.chain_3403	2
scaffold_12	ends_in_intron	16176087	16176087	+	asmbl_9111	none	STRG.15359.2,blat.proc3829877.chain_3745	2	STRG.15359.1,STRG.15359.3,Trinity_GG_8421_c0_g1_i2,Trinity_GG_8421_c0_g1_i4,blat.proc3829877.chain_3742,blat.proc3829877.chain_3744	6
scaffold_1	alt_donor	16326292	16326293	+	asmbl_2459	none	STRG.1143.1	1	STRG.1143.2	1
scaffold_23	retained_intron	5339139	5339871	-	asmbl_31629,asmbl_31630,asmbl_31631	none	STRG.25890.2,Trinity_GG_31478_c0_g1_i2,Trinity_GG_31478_c0_g1_i3,blat.proc3829899.chain_2977,blat.proc3829899.chain_2978	5	STRG.25890.3,Trinity_GG_31478_c0_g1_i5,blat.proc3829899.chain_2982	3
scaffold_4	alt_acceptor	19572000	19572001	+	asmbl_43499	none	STRG.5539.3	1	STRG.5539.1,blat.proc3829873.chain_1734	2
scaffold_12	retained_intron	15773119	15773403	-	asmbl_8242	none	STRG.15354.2,blat.proc3829895.chain_82	2	STRG.15354.1,blat.proc3829895.chain_83	2
scaffold_1	alt_acceptor	12334913	12334914	-	asmbl_710,asmbl_711	none	STRG.843.2,blat.proc3829887.chain_741,blat.proc3829887.chain_743	3	blat.proc3829887.chain_735,blat.proc3829887.chain_736	2
scaffold_7	ends_in_intron	1447291	1447291	-	asmbl_49543	none	Trinity_GG_21961_c0_g1_i4,blat.proc3829891.chain_1034	2	STRG.8632.1,Trinity_GG_21961_c0_g1_i2,blat.proc3829891.chain_1033	3
scaffold_11	retained_intron	224369	224543	-	asmbl_6359	none	STRG.13249.1	1	STRG.13249.2	1
scaffold_5	alt_donor	3591555	3591556	-	asmbl_45310,asmbl_45311,asmbl_45312	none	STRG.5822.3,STRG.5822.4,STRG.5822.5,blat.proc3829889.chain_1928	4	STRG.5822.1,STRG.5822.2,blat.proc3829889.chain_1927	3
scaffold_9	alternate_exon	5659854	5660852	+	asmbl_54047	none	STRG.11120.1,blat.proc3829875.chain_3626	2	STRG.11120.2	1
scaffold_22	spliced_intron	4239535	4239758	-	asmbl_29980,asmbl_29984	none	STRG.24838.3,blat.proc3829899.chain_1980	2	STRG.24838.1,STRG.24838.4,blat.proc3829899.chain_1981,blat.proc3829899.chain_1983	4
scaffold_6	alt_donor	3805756	3805757	+	asmbl_46806,asmbl_46811	none	STRG.7379.3,STRG.7379.4	2	STRG.7379.1,STRG.7379.2,STRG.7379.5	3
scaffold_7	alt_donor	17339210	17339211	-	asmbl_50247	none	STRG.9603.2	1	STRG.9603.1,STRG.9603.3	2
scaffold_9	alt_acceptor	560221	560222	+	asmbl_53745	none	STRG.10777.1,blat.proc3829875.chain_3279	2	STRG.10777.2,blat.proc3829875.chain_3280	2
scaffold_13	alt_donor	16460319	16460320	-	asmbl_10274	none	STRG.16689.4,Trinity_GG_26334_c0_g1_i3,blat.proc3829895.chain_1353	3	STRG.16689.1,STRG.16689.3,STRG.16689.5,Trinity_GG_26334_c0_g1_i2,blat.proc3829895.chain_1355,blat.proc3829895.chain_1357	6
scaffold_8	skipped_exon	17810310	17813119	+	asmbl_52498,asmbl_52503	none	STRG.10687.2,STRG.10687.4,Trinity_GG_5905_c0_g1_i4,blat.proc3829875.chain_3120	4	STRG.10687.1,Trinity_GG_5905_c0_g1_i7,blat.proc3829875.chain_3121,blat.proc3829875.chain_3124	4
scaffold_21	retained_exon	11272769	11272852	-	asmbl_28138,asmbl_28140,asmbl_28141,asmbl_28142	none	STRG.24588.1,STRG.24588.2,blat.proc3829899.chain_1688,blat.proc3829899.chain_1689,blat.proc3829899.chain_1692	5	blat.proc3829899.chain_1690,blat.proc3829899.chain_1691,blat.proc3829899.chain_1695	3
scaffold_9	alt_acceptor	5019230	5019231	+	asmbl_53963	none	Trinity_GG_6159_c0_g1_i3,blat.proc3829875.chain_3529	2	STRG.11062.2,Trinity_GG_6159_c0_g1_i2,blat.proc3829875.chain_3528	3
scaffold_25	retained_exon	4334269	4334343	-	asmbl_34164	none	STRG.27343.2,blat.proc3829901.chain_654	2	STRG.27343.1,blat.proc3829901.chain_655	2
scaffold_25	retained_exon	5827636	5827769	-	asmbl_34267	none	STRG.27460.1	1	STRG.27460.2	1
scaffold_5	starts_in_intron	2670540	2670540	-	asmbl_45280	none	Trinity_GG_20271_c0_g1_i7	1	STRG.5790.1,STRG.5790.3,blat.proc3829889.chain_1872,blat.proc3829889.chain_1875	4
scaffold_9	alt_acceptor	16569820	16569821	+	asmbl_54573,asmbl_54578	none	Trinity_GG_6586_c0_g1_i14,Trinity_GG_6586_c0_g1_i23,blat.proc3829877.chain_552,blat.proc3829877.chain_558	4	STRG.11798.1,STRG.11798.2,Trinity_GG_6586_c0_g1_i10,Trinity_GG_6586_c0_g1_i15,Trinity_GG_6586_c0_g1_i5,Trinity_GG_6586_c0_g1_i6,blat.proc3829877.chain_551,blat.proc3829877.chain_553,blat.proc3829877.chain_555,blat.proc3829877.chain_556,blat.proc3829877.chain_557	11
scaffold_3	alt_acceptor	19805436	19805437	+	asmbl_40729,asmbl_40730,asmbl_40732	none	STRG.4094.1,STRG.4094.2,blat.proc3829873.chain_434,blat.proc3829873.chain_436	4	STRG.4094.3	1
scaffold_17	spliced_intron	9867881	9867999	-	asmbl_19261,asmbl_19262	none	STRG.20591.3,blat.proc3829897.chain_1550	2	STRG.20591.1,STRG.20591.2,blat.proc3829897.chain_1549	3
scaffold_1	alt_acceptor	6254903	6254904	-	asmbl_336	none	Trinity_GG_17236_c0_g1_i1,blat.proc3829887.chain_290	2	STRG.419.1,STRG.419.2,Trinity_GG_17236_c0_g1_i4	3
scaffold_20	spliced_intron	1754144	1754228	+	asmbl_25606	none	STRG.22907.3,Trinity_GG_12636_c0_g1_i4,blat.proc3829883.chain_58	3	STRG.22907.1,STRG.22907.4,blat.proc3829883.chain_56	3
scaffold_14	starts_in_intron	13222328	13222328	+	asmbl_12452	none	STRG.17600.6	1	STRG.17600.1,STRG.17600.2,STRG.17600.3,STRG.17600.4,STRG.17600.5,blat.proc3829879.chain_2201,blat.proc3829879.chain_2202,blat.proc3829879.chain_2203,blat.proc3829879.chain_2204,blat.proc3829879.chain_2205	10
scaffold_17	ends_in_intron	1813422	1813422	+	asmbl_17759	none	STRG.19991.1,blat.proc3829881.chain_787	2	STRG.19991.2,blat.proc3829881.chain_788	2
scaffold_9	retained_intron	9653406	9653486	+	asmbl_54205,asmbl_54207,asmbl_54208	none	STRG.11332.1,blat.proc3829877.chain_100,blat.proc3829877.chain_98,blat.proc3829877.chain_99	4	STRG.11332.2	1
scaffold_23	spliced_intron	7045280	7045597	-	asmbl_31731,asmbl_31732	none	STRG.26010.1,blat.proc3829899.chain_3117,blat.proc3829899.chain_3119	3	blat.proc3829899.chain_3120	1
scaffold_7	spliced_intron	8279661	8279764	+	asmbl_50864,asmbl_50867	none	STRG.9053.1,blat.proc3829875.chain_1512,blat.proc3829875.chain_1513	3	blat.proc3829875.chain_1511	1
scaffold_22	spliced_intron	6166014	6166161	-	asmbl_30086	none	STRG.24956.1,blat.proc3829899.chain_2062	2	Trinity_GG_30948_c0_g1_i1,blat.proc3829899.chain_2063	2
scaffold_18	spliced_intron	1895347	1897477	-	asmbl_19699,asmbl_19702	none	STRG.21072.4,STRG.21072.6	2	STRG.21072.2,STRG.21072.3,STRG.21072.8	3
scaffold_13	starts_in_intron	3510350	3510350	+	asmbl_10682	none	blat.proc3829879.chain_357	1	STRG.15648.1	1
scaffold_9	starts_in_intron	3922544	3922544	+	asmbl_53913	none	Trinity_GG_6089_c0_g1_i1,blat.proc3829875.chain_3420	2	STRG.11003.2	1
scaffold_13	alt_donor	2274819	2274820	-	asmbl_9403	none	blat.proc3829895.chain_308	1	STRG.15533.3,blat.proc3829895.chain_309,blat.proc3829895.chain_313	3
scaffold_5	starts_in_intron	5047596	5047596	+	asmbl_43997	none	Trinity_GG_3261_c0_g1_i6,blat.proc3829873.chain_2106	2	STRG.5951.1,STRG.5951.2,blat.proc3829873.chain_2107,blat.proc3829873.chain_2108	4
scaffold_8	alt_donor	11298983	11298984	+	asmbl_52204,asmbl_52207	none	STRG.10336.1,Trinity_GG_5757_c0_g1_i2,Trinity_GG_5757_c0_g1_i4,blat.proc3829875.chain_2856,blat.proc3829875.chain_2857	5	STRG.10336.2,STRG.10336.3,Trinity_GG_5757_c0_g1_i1,Trinity_GG_5757_c0_g1_i3,blat.proc3829875.chain_2855,blat.proc3829875.chain_2858	6
scaffold_4	alternate_exon	5188786	5191231	-	asmbl_41301	none	STRG.4410.1,blat.proc3829889.chain_521	2	STRG.4410.2,blat.proc3829889.chain_522	2
scaffold_14	skipped_exon	12593720	12595920	+	asmbl_12414,asmbl_12415	none	STRG.17564.1,STRG.17564.4,blat.proc3829879.chain_2187,blat.proc3829879.chain_2189	4	STRG.17564.3	1
scaffold_27	ends_in_intron	7193944	7193944	-	asmbl_37049	none	STRG.29056.3,blat.proc3829901.chain_2210	2	STRG.29056.1,STRG.29056.2,blat.proc3829901.chain_2211,blat.proc3829901.chain_2212	4
scaffold_6	alt_donor	601230	601231	-	asmbl_47992,asmbl_47993,asmbl_47995	none	STRG.7116.3,STRG.7116.4,STRG.7116.5,blat.proc3829889.chain_3099	4	STRG.7116.1,STRG.7116.2,blat.proc3829889.chain_3098	3
scaffold_3	alternate_exon	5928686	5929748	-	asmbl_38827	none	blat.proc3829887.chain_2990	1	blat.proc3829887.chain_2994	1
scaffold_21	alt_acceptor	3973263	3973264	-	asmbl_27585	none	STRG.23966.1,blat.proc3829899.chain_1037	2	STRG.23966.2	1
scaffold_1	retained_intron	1994334	1994743	+	asmbl_1524	none	blat.proc3829871.chain_176	1	STRG.126.1,STRG.126.2,Trinity_GG_103_c0_g1_i2,blat.proc3829871.chain_177,blat.proc3829871.chain_178	5
scaffold_44	alternate_exon	28306	28402	-	asmbl_43690	none	STRG.30027.1	1	STRG.30027.2,STRG.30027.3,blat.proc3829901.chain_3130	3
scaffold_1	spliced_intron	5739339	5739419	+	asmbl_1764,asmbl_1768	none	STRG.382.2,blat.proc3829871.chain_372,blat.proc3829871.chain_373	3	blat.proc3829871.chain_370,blat.proc3829871.chain_371,blat.proc3829871.chain_375	3
scaffold_25	alternate_exon	6839661	6839746	-	asmbl_34346	none	STRG.27529.1,Trinity_GG_32446_c0_g1_i2,blat.proc3829901.chain_857	3	STRG.27529.2,Trinity_GG_32446_c0_g1_i1,blat.proc3829901.chain_858	3
scaffold_17	spliced_intron	14325639	14325766	-	asmbl_19471	none	STRG.20895.1,blat.proc3829897.chain_1796	2	blat.proc3829897.chain_1795	1
scaffold_2	alt_acceptor	483872	483873	-	asmbl_22833	none	STRG.1533.2	1	STRG.1533.1,STRG.1533.3,blat.proc3829887.chain_1416	3
scaffold_2	alt_donor	7781346	7781347	+	asmbl_24605,asmbl_24608,asmbl_24609,asmbl_24611,asmbl_24613	none	STRG.2076.1,STRG.2076.2,STRG.2076.4,blat.proc3829871.chain_2202,blat.proc3829871.chain_2203,blat.proc3829871.chain_2205,blat.proc3829871.chain_2208,blat.proc3829871.chain_2211,blat.proc3829871.chain_2213	9	STRG.2076.5,STRG.2076.6	2
scaffold_5	retained_intron	13825214	13825331	-	asmbl_45948	none	STRG.6588.2	1	STRG.6588.1,Trinity_GG_20720_c0_g1_i1,blat.proc3829889.chain_2668	3
scaffold_7	alt_acceptor	17339140	17339141	-	asmbl_50247	none	STRG.9603.2	1	STRG.9603.1,STRG.9603.3	2
scaffold_23	spliced_intron	7005777	7005932	-	asmbl_31724	none	STRG.26005.2	1	Trinity_GG_31538_c0_g1_i2,blat.proc3829899.chain_3076	2
scaffold_24	alternate_exon	8738456	8738881	-	asmbl_33085,asmbl_33087,asmbl_33088	none	STRG.26873.1,blat.proc3829901.chain_170,blat.proc3829901.chain_171,blat.proc3829901.chain_172	4	STRG.26873.2,blat.proc3829901.chain_169	2
scaffold_7	alternate_exon	8197647	8200929	+	asmbl_50849,asmbl_50851	none	STRG.9047.1,Trinity_GG_4945_c0_g1_i3,blat.proc3829875.chain_1385,blat.proc3829875.chain_1386,blat.proc3829875.chain_1387	5	STRG.9047.2,blat.proc3829875.chain_1388,blat.proc3829875.chain_1389	3
scaffold_11	alternate_exon	3715674	3715820	-	asmbl_6544	none	STRG.13481.1,Trinity_GG_24555_c0_g2_i4	2	STRG.13481.2,blat.proc3829893.chain_1931	2
scaffold_13	retained_intron	381828	381913	-	asmbl_9293,asmbl_9294	none	STRG.15421.2,blat.proc3829895.chain_151	2	STRG.15421.4,blat.proc3829895.chain_150	2
scaffold_6	ends_in_intron	13196978	13196978	+	asmbl_47429	none	Trinity_GG_4442_c1_g1_i2,blat.proc3829875.chain_520	2	STRG.8074.1,STRG.8074.2,Trinity_GG_4442_c1_g1_i1,blat.proc3829875.chain_521	4
scaffold_3	spliced_intron	13703667	13704187	+	asmbl_40407,asmbl_40408,asmbl_40409,asmbl_40410	none	STRG.3712.1,STRG.3712.2,STRG.3712.3,STRG.3712.4,Trinity_GG_2088_c0_g1_i7,blat.proc3829873.chain_129,blat.proc3829873.chain_130,blat.proc3829873.chain_133,blat.proc3829873.chain_134	9	blat.proc3829873.chain_132	1
scaffold_17	retained_intron	5711677	5712050	-	asmbl_18990,asmbl_18991	none	blat.proc3829897.chain_1236,blat.proc3829897.chain_1237	2	STRG.20262.1,STRG.20262.2,blat.proc3829897.chain_1234,blat.proc3829897.chain_1235	4
scaffold_14	alternate_exon	14106644	14106847	-	asmbl_13660	none	STRG.17663.3	1	STRG.17663.2	1
scaffold_2	spliced_intron	7924289	7924370	-	asmbl_23316,asmbl_23318,asmbl_23320	none	STRG.2092.1,STRG.2092.2,blat.proc3829887.chain_2033,blat.proc3829887.chain_2036	4	blat.proc3829887.chain_2034	1
scaffold_6	alt_donor	2481734	2481735	-	asmbl_48075	none	STRG.7236.1,blat.proc3829889.chain_3220	2	blat.proc3829889.chain_3219	1
scaffold_1	spliced_intron	10950202	10950350	+	asmbl_2031	none	blat.proc3829871.chain_752	1	STRG.713.2,STRG.713.4,blat.proc3829871.chain_748,blat.proc3829871.chain_750,blat.proc3829871.chain_753,blat.proc3829871.chain_754	6
scaffold_4	retained_intron	11075139	11075573	+	asmbl_43031	none	STRG.4827.3,Trinity_GG_2673_c1_g1_i1,blat.proc3829873.chain_1146	3	STRG.4827.1,Trinity_GG_2673_c0_g1_i1,blat.proc3829873.chain_1145	3
scaffold_25	starts_in_intron	3293500	3293500	-	asmbl_34109	none	blat.proc3829901.chain_580	1	STRG.27260.4,STRG.27260.5,blat.proc3829901.chain_582	3
scaffold_5	skipped_exon	10381045	10381466	-	asmbl_45738	none	STRG.6330.3	1	STRG.6330.1,STRG.6330.2,blat.proc3829889.chain_2440,blat.proc3829889.chain_2441	4
scaffold_14	alt_acceptor	8335442	8335443	+	asmbl_12204,asmbl_12206	none	STRG.17242.1,blat.proc3829879.chain_1980,blat.proc3829879.chain_1981	3	STRG.17242.2	1
scaffold_13	retained_intron	3733822	3733964	+	asmbl_10716,asmbl_10717	none	blat.proc3829879.chain_389,blat.proc3829879.chain_393	2	STRG.15686.2,blat.proc3829879.chain_392	2
scaffold_5	retained_intron	14731114	14731222	-	asmbl_45995	none	Trinity_GG_20753_c0_g1_i3,blat.proc3829889.chain_2714	2	STRG.6667.1,blat.proc3829889.chain_2713	2
scaffold_16	alt_donor	8025909	8025910	-	asmbl_16392	none	STRG.19429.1,blat.proc3829897.chain_471	2	STRG.19429.2	1
scaffold_23	spliced_intron	4312110	4313057	+	asmbl_30804	none	blat.proc3829883.chain_2714	1	blat.proc3829883.chain_2711	1
scaffold_3	skipped_exon	1763337	1764538	+	asmbl_39825	none	STRG.2991.4,blat.proc3829871.chain_3183	2	STRG.2991.1,STRG.2991.3,blat.proc3829871.chain_3179,blat.proc3829871.chain_3180,blat.proc3829871.chain_3181,blat.proc3829871.chain_3182,blat.proc3829871.chain_3184,blat.proc3829871.chain_3185	8
scaffold_14	alt_donor	11439773	11439774	-	asmbl_13469	none	STRG.17461.2	1	STRG.17461.1,blat.proc3829895.chain_2162	2
scaffold_4	spliced_intron	5651885	5652027	-	asmbl_41361	none	blat.proc3829889.chain_609	1	STRG.4469.1,Trinity_GG_19533_c0_g1_i2,blat.proc3829889.chain_602,blat.proc3829889.chain_607,blat.proc3829889.chain_610	5
scaffold_10	starts_in_intron	17710768	17710768	-	asmbl_3968	none	Trinity_GG_24401_c0_g1_i2,blat.proc3829893.chain_1669	2	STRG.13213.1,blat.proc3829893.chain_1670	2
scaffold_22	spliced_intron	1013479	1013787	-	asmbl_29903	none	STRG.24743.1,blat.proc3829899.chain_1857	2	Trinity_GG_30832_c0_g1_i3,blat.proc3829899.chain_1859	2
scaffold_14	alt_donor	12351303	12351304	+	asmbl_12405	none	STRG.17560.3,blat.proc3829879.chain_2237	2	STRG.17560.1,STRG.17560.2,blat.proc3829879.chain_2238	3
scaffold_6	alt_donor	13871424	13871425	+	asmbl_47477	none	STRG.8125.1,Trinity_GG_21655_c0_g1_i1,Trinity_GG_4470_c0_g1_i1,Trinity_GG_4470_c0_g1_i5,blat.proc3829875.chain_560,blat.proc3829875.chain_562,blat.proc3829891.chain_484	7	STRG.8125.2,blat.proc3829875.chain_561,blat.proc3829875.chain_563	3
scaffold_6	spliced_intron	16876680	16876794	-	asmbl_49105	none	STRG.8397.2,blat.proc3829891.chain_722	2	STRG.8397.1,blat.proc3829891.chain_721	2
scaffold_16	alt_acceptor	6232191	6232192	-	asmbl_16330	none	STRG.19353.2	1	STRG.19353.1	1
scaffold_2	retained_intron	7323594	7324003	+	asmbl_24596,asmbl_24598	none	STRG.2062.1,Trinity_GG_1176_c0_g1_i3,Trinity_GG_1176_c0_g1_i4,blat.proc3829871.chain_2159,blat.proc3829871.chain_2161	5	STRG.2062.2	1
scaffold_28	alt_acceptor	3329565	3329566	+	asmbl_38170	none	blat.proc3829885.chain_2685	1	STRG.29532.1	1
scaffold_20	retained_intron	7473157	7473239	-	asmbl_26833	none	blat.proc3829899.chain_395	1	STRG.23308.1,blat.proc3829899.chain_389,blat.proc3829899.chain_391,blat.proc3829899.chain_393,blat.proc3829899.chain_394,blat.proc3829899.chain_396,blat.proc3829899.chain_399,blat.proc3829899.chain_401	8
scaffold_18	alternate_exon	7241578	7241881	+	asmbl_20759	none	STRG.21440.3,Trinity_GG_11830_c1_g1_i1,blat.proc3829881.chain_2386	3	STRG.21440.2,blat.proc3829881.chain_2385	2
scaffold_27	alt_donor	9105649	9105650	+	asmbl_36459	none	blat.proc3829885.chain_2319	1	blat.proc3829885.chain_2318,blat.proc3829885.chain_2320	2
scaffold_1	retained_intron	175065	175198	-	asmbl_11,asmbl_12,asmbl_13	none	Trinity_GG_17028_c0_g1_i1,Trinity_GG_17028_c0_g1_i4,Trinity_GG_17028_c0_g1_i5,blat.proc3829885.chain_3684,blat.proc3829885.chain_3686,blat.proc3829885.chain_3687,blat.proc3829885.chain_3688	7	STRG.15.1,STRG.15.2,blat.proc3829885.chain_3683,blat.proc3829885.chain_3685	4
scaffold_19	spliced_intron	2917569	2917600	+	asmbl_22091	none	blat.proc3829881.chain_2862	1	STRG.21967.1	1
scaffold_2	alt_acceptor	16357876	16357877	+	asmbl_25150	none	STRG.2573.3,blat.proc3829871.chain_2760	2	STRG.2573.1,STRG.2573.2,STRG.2573.4,Trinity_GG_1455_c0_g1_i3,blat.proc3829871.chain_2758,blat.proc3829871.chain_2759,blat.proc3829871.chain_2761	7
scaffold_1	spliced_intron	6328992	6329103	+	asmbl_1821,asmbl_1822	none	STRG.428.1,STRG.428.3,Trinity_GG_267_c0_g1_i2,blat.proc3829871.chain_473,blat.proc3829871.chain_474	5	STRG.428.2	1
scaffold_13	spliced_intron	87947	88104	+	asmbl_10429	none	STRG.15412.2,blat.proc3829879.chain_80	2	STRG.15412.1,STRG.15412.4,Trinity_GG_8476_c0_g2_i1,blat.proc3829879.chain_82	4
scaffold_19	alt_donor	13155026	13155027	-	asmbl_21823	none	STRG.22626.2,blat.proc3829897.chain_3410	2	STRG.22626.1,blat.proc3829897.chain_3409	2
scaffold_3	alt_acceptor	5916625	5916626	-	asmbl_38824	none	STRG.3246.1,blat.proc3829887.chain_2922	2	STRG.3246.2	1
scaffold_2	retained_intron	5360023	5360118	+	asmbl_24441	none	STRG.1943.2,blat.proc3829871.chain_1976	2	STRG.1943.1,blat.proc3829871.chain_1975	2
scaffold_10	starts_in_intron	6876895	6876895	-	asmbl_3430	none	blat.proc3829893.chain_988	1	STRG.12500.1,blat.proc3829893.chain_989	2
scaffold_20	alternate_exon	1132353	1132469	-	asmbl_26478	none	STRG.22816.1	1	STRG.22816.2,blat.proc3829897.chain_3547	2
scaffold_1	ends_in_intron	8754931	8754931	-	asmbl_494	none	Trinity_GG_17342_c1_g1_i1,blat.proc3829887.chain_513	2	STRG.583.2,STRG.583.4,blat.proc3829887.chain_507,blat.proc3829887.chain_509	4
scaffold_5	alternate_exon	60973	63191	+	asmbl_43730	none	STRG.5564.1,blat.proc3829873.chain_1775	2	blat.proc3829873.chain_1774	1
scaffold_500	retained_intron	746	1074	+	asmbl_46445,asmbl_46447,asmbl_46451	none	blat.proc3829885.chain_3364,blat.proc3829885.chain_3367,blat.proc3829885.chain_3368	3	STRG.30347.1,STRG.30347.2,STRG.30347.3,STRG.30347.4,blat.proc3829885.chain_3365,blat.proc3829885.chain_3366,blat.proc3829885.chain_3369	7
scaffold_15	retained_intron	9854011	9854120	-	asmbl_15433,asmbl_15434,asmbl_15435	none	STRG.18491.1,STRG.18491.3,STRG.18491.4,Trinity_GG_27412_c1_g1_i2,blat.proc3829895.chain_3276	5	STRG.18491.2	1
scaffold_5	starts_in_intron	14262525	14262525	+	asmbl_44589	none	blat.proc3829873.chain_2770	1	STRG.6629.1,STRG.6629.2,blat.proc3829873.chain_2764,blat.proc3829873.chain_2765,blat.proc3829873.chain_2767,blat.proc3829873.chain_2769	6
scaffold_9	alternate_exon	6920388	6921103	-	asmbl_55068	none	blat.proc3829891.chain_3349	1	blat.proc3829891.chain_3348	1
scaffold_27	retained_intron	2436344	2436368	+	asmbl_36046	none	blat.proc3829885.chain_1760	1	STRG.28696.1	1
scaffold_11	starts_in_intron	9083718	9083718	-	asmbl_6896	none	blat.proc3829893.chain_2351	1	STRG.13931.1,blat.proc3829893.chain_2350	2
scaffold_12	alt_donor	5463359	5463360	-	asmbl_7627,asmbl_7629	none	STRG.14690.1,STRG.14690.4,blat.proc3829893.chain_3103,blat.proc3829893.chain_3104	4	STRG.14690.2,STRG.14690.3,STRG.14690.5,blat.proc3829893.chain_3105	4
scaffold_16	retained_exon	10448353	10448429	+	asmbl_17340	none	STRG.19602.2	1	STRG.19602.4	1
scaffold_9	skipped_exon	16346615	16347997	-	asmbl_55532	none	STRG.11780.2	1	STRG.11780.1,blat.proc3829893.chain_144	2
scaffold_18	alt_donor	13654373	13654374	-	asmbl_20207	none	STRG.21788.2	1	STRG.21788.1,blat.proc3829897.chain_2559,blat.proc3829897.chain_2560	3
scaffold_28	retained_intron	6515478	6515563	-	asmbl_37672,asmbl_37674	none	STRG.29726.1,STRG.29726.3	2	blat.proc3829901.chain_2784	1
scaffold_20	spliced_intron	1469616	1469860	-	asmbl_26504,asmbl_26508	none	STRG.22854.3,blat.proc3829897.chain_3658,blat.proc3829897.chain_3659	3	STRG.22854.2,blat.proc3829897.chain_3656,blat.proc3829897.chain_3660,blat.proc3829897.chain_3661	4
scaffold_4	alt_acceptor	13113191	13113192	-	asmbl_41719	none	STRG.4951.3	1	STRG.4951.1,STRG.4951.2,STRG.4951.4,blat.proc3829889.chain_1007,blat.proc3829889.chain_1008,blat.proc3829889.chain_1009	6
scaffold_5	alt_donor	5865398	5865399	-	asmbl_45453	none	STRG.5992.3	1	STRG.5992.2	1
scaffold_10	alt_donor	2762595	2762596	-	asmbl_3040,asmbl_3041	none	STRG.12086.1,STRG.12086.2,blat.proc3829893.chain_541,blat.proc3829893.chain_544	4	STRG.12086.3,blat.proc3829893.chain_542,blat.proc3829893.chain_543	3
scaffold_16	alt_acceptor	7503185	7503186	-	asmbl_16358	none	STRG.19389.1,Trinity_GG_27903_c0_g1_i1,blat.proc3829897.chain_436	3	STRG.19389.2	1
scaffold_20	ends_in_intron	8003361	8003361	-	asmbl_26873	none	Trinity_GG_30011_c0_g1_i1,blat.proc3829899.chain_332	2	STRG.23335.2	1
scaffold_19	spliced_intron	12247353	12247482	-	asmbl_21681,asmbl_21682,asmbl_21685,asmbl_21686	none	STRG.22540.1,STRG.22540.2,Trinity_GG_29555_c0_g1_i1,Trinity_GG_29555_c0_g1_i5,Trinity_GG_29555_c0_g1_i7,Trinity_GG_29555_c0_g1_i8,blat.proc3829897.chain_3244,blat.proc3829897.chain_3245,blat.proc3829897.chain_3246,blat.proc3829897.chain_3247	10	Trinity_GG_29555_c0_g1_i2,Trinity_GG_29555_c0_g1_i6,blat.proc3829897.chain_3241,blat.proc3829897.chain_3242	4
scaffold_14	alt_donor	2888061	2888062	-	asmbl_12961	none	STRG.16870.4,Trinity_GG_26461_c0_g1_i1,blat.proc3829895.chain_1572	3	STRG.16870.2,blat.proc3829895.chain_1571	2
scaffold_5	alt_donor	3773189	3773190	+	asmbl_43901	none	STRG.5834.2,blat.proc3829873.chain_2013	2	STRG.5834.3,blat.proc3829873.chain_2012	2
scaffold_12	retained_intron	4787739	4787935	-	asmbl_7580,asmbl_7586	none	STRG.14646.6,blat.proc3829893.chain_3019	2	STRG.14646.3,STRG.14646.4,blat.proc3829893.chain_3020,blat.proc3829893.chain_3025	4
scaffold_6	retained_intron	7849656	7849695	+	asmbl_47021	none	STRG.7662.5	1	STRG.7662.2	1
scaffold_8	retained_intron	16278978	16279098	-	asmbl_53385,asmbl_53387	none	STRG.10612.2,STRG.10612.4,blat.proc3829891.chain_2748	3	STRG.10612.1,blat.proc3829891.chain_2750	2
scaffold_8	retained_intron	18089772	18090313	+	asmbl_52519	none	STRG.10702.3,blat.proc3829875.chain_3181	2	blat.proc3829875.chain_3182	1
scaffold_4	alt_donor	3279583	3279584	+	asmbl_42493	none	STRG.4254.1,Trinity_GG_2364_c0_g1_i3,blat.proc3829873.chain_601	3	Trinity_GG_2364_c0_g1_i2,blat.proc3829873.chain_600	2
scaffold_14	alt_acceptor	13582196	13582197	-	asmbl_13627	none	STRG.17623.1,blat.proc3829895.chain_2370	2	STRG.17623.2,blat.proc3829895.chain_2371	2
scaffold_12	alt_acceptor	5042709	5042710	-	asmbl_7605	none	STRG.14668.2	1	STRG.14668.1,blat.proc3829893.chain_2957,blat.proc3829893.chain_2958	3
scaffold_9	alt_donor	66933	66934	+	asmbl_53729	none	STRG.10758.1	1	STRG.10758.2,blat.proc3829875.chain_3247	2
scaffold_21	alternate_exon	7727811	7734029	+	asmbl_28780	none	STRG.24301.1,Trinity_GG_13435_c0_g1_i1,blat.proc3829883.chain_1400	3	STRG.24301.3	1
scaffold_1	alt_acceptor	7697554	7697555	+	asmbl_1906	none	STRG.534.1,Trinity_GG_337_c0_g1_i2,blat.proc3829871.chain_590	3	STRG.534.2,Trinity_GG_337_c0_g1_i1,blat.proc3829871.chain_591	3
scaffold_19	alt_donor	12107237	12107238	-	asmbl_21670	none	STRG.22526.2,blat.proc3829897.chain_3212	2	STRG.22526.3	1
scaffold_3	alt_donor	6645151	6645152	+	asmbl_40057	none	STRG.3282.2	1	STRG.3282.1,blat.proc3829871.chain_3444	2
scaffold_6	retained_intron	9089438	9089565	+	asmbl_47136	none	blat.proc3829875.chain_155	1	STRG.7778.1,blat.proc3829875.chain_154	2
scaffold_18	alt_acceptor	282125	282126	+	asmbl_20313	none	STRG.20973.4,blat.proc3829881.chain_1823	2	STRG.20973.1,STRG.20973.3,blat.proc3829881.chain_1822	3
scaffold_2	starts_in_intron	10374969	10374969	-	asmbl_23431	none	blat.proc3829887.chain_2110	1	STRG.2212.1,STRG.2212.2,blat.proc3829887.chain_2109,blat.proc3829887.chain_2111	4
scaffold_10	ends_in_intron	16834281	16834281	-	asmbl_3916	none	blat.proc3829893.chain_1609	1	STRG.13116.2	1
scaffold_26	spliced_intron	903117	903347	+	asmbl_35240	none	STRG.27880.1,blat.proc3829885.chain_888	2	STRG.27880.2,Trinity_GG_15392_c0_g1_i1,Trinity_GG_15394_c0_g1_i1,blat.proc3829885.chain_886	4
scaffold_5	starts_in_intron	12483701	12483701	+	asmbl_44475	none	Trinity_GG_3508_c0_g1_i4,blat.proc3829873.chain_2587	2	STRG.6474.1	1
scaffold_18	alt_donor	12935359	12935360	+	asmbl_21004	none	blat.proc3829897.chain_2535	1	STRG.21731.1,STRG.21731.2	2
scaffold_12	ends_in_intron	1048161	1048161	+	asmbl_8417	none	Trinity_GG_7965_c0_g1_i1,blat.proc3829877.chain_2931	2	STRG.14434.1,Trinity_GG_7965_c0_g1_i2,blat.proc3829877.chain_2930	3
scaffold_16	ends_in_intron	9894211	9894211	-	asmbl_16479	none	Trinity_GG_28007_c1_g1_i1,blat.proc3829897.chain_592	2	STRG.19565.1,blat.proc3829897.chain_590	2
scaffold_1	retained_exon	14201385	14201845	+	asmbl_2325,asmbl_2327	none	STRG.1004.3,Trinity_GG_586_c0_g1_i5,blat.proc3829871.chain_1052	3	STRG.1004.1,Trinity_GG_586_c0_g1_i1,blat.proc3829871.chain_1048	3
scaffold_8	spliced_intron	8607259	8607362	-	asmbl_52958	none	STRG.10108.1,blat.proc3829891.chain_2288	2	blat.proc3829891.chain_2290	1
scaffold_16	alt_acceptor	10746561	10746562	+	asmbl_17356	none	STRG.19614.1,Trinity_GG_10748_c0_g1_i2,blat.proc3829881.chain_490	3	STRG.19614.2,STRG.19614.3,Trinity_GG_10748_c0_g1_i1,blat.proc3829881.chain_489	4
scaffold_21	retained_intron	1272146	1272171	-	asmbl_27423	none	STRG.23792.1	1	blat.proc3829899.chain_832	1
scaffold_8	retained_intron	11270565	11270676	-	asmbl_53137	none	STRG.10329.1,blat.proc3829891.chain_2492	2	STRG.10329.3	1
scaffold_3	spliced_intron	1089700	1089735	+	asmbl_39785,asmbl_39786	none	STRG.2937.1,STRG.2937.3,blat.proc3829871.chain_3056	3	STRG.2937.2	1
scaffold_3	retained_intron	3261824	3262038	+	asmbl_39905	none	blat.proc3829871.chain_3306	1	STRG.3087.1,STRG.3087.6,blat.proc3829871.chain_3297,blat.proc3829871.chain_3309	4
scaffold_10	spliced_intron	3062983	3063389	-	asmbl_3068	none	STRG.12117.2,blat.proc3829893.chain_587	2	STRG.12117.1,Trinity_GG_23774_c0_g1_i2,blat.proc3829893.chain_588	3
scaffold_5	alternate_exon	10300251	10302100	-	asmbl_45721	none	Trinity_GG_20570_c3_g1_i1,blat.proc3829889.chain_2414	2	STRG.6324.1,STRG.6324.2,STRG.6324.3,blat.proc3829889.chain_2410,blat.proc3829889.chain_2412	5
scaffold_5	alt_acceptor	15801908	15801909	-	asmbl_46111	none	STRG.6762.2	1	STRG.6762.1	1
scaffold_16	spliced_intron	6199474	6199753	+	asmbl_17094,asmbl_17096	none	STRG.19374.1,STRG.19374.2,blat.proc3829881.chain_202	3	Trinity_GG_10586_c0_g1_i3,blat.proc3829881.chain_203	2
scaffold_17	retained_intron	1291368	1292422	-	asmbl_18726	none	STRG.19952.5,blat.proc3829897.chain_841	2	STRG.19952.3,blat.proc3829897.chain_836,blat.proc3829897.chain_838	3
scaffold_17	retained_intron	8951374	8951464	+	asmbl_18174	none	STRG.20504.2,blat.proc3829881.chain_1273	2	STRG.20504.1,blat.proc3829881.chain_1274	2
scaffold_13	alt_acceptor	5820674	5820675	+	asmbl_10880,asmbl_10881	none	STRG.15880.1,STRG.15880.3	2	STRG.15880.4	1
scaffold_3	retained_intron	6871188	6871289	+	asmbl_40102	none	STRG.3307.1,blat.proc3829871.chain_3435	2	STRG.3307.2	1
scaffold_13	spliced_intron	12039370	12039399	+	asmbl_11307	none	STRG.16331.2	1	STRG.16331.1	1
scaffold_2	spliced_intron	14279595	14279835	+	asmbl_24926,asmbl_24928,asmbl_24929,asmbl_24931	none	STRG.2425.1,STRG.2425.2,STRG.2425.3,blat.proc3829871.chain_2546	4	STRG.2425.4,blat.proc3829871.chain_2542	2
scaffold_23	spliced_intron	245837	246226	-	asmbl_31288	none	STRG.25528.2,blat.proc3829899.chain_2631	2	Trinity_GG_31285_c0_g1_i2,blat.proc3829899.chain_2630	2
scaffold_28	starts_in_intron	4937827	4937827	-	asmbl_37553	none	blat.proc3829901.chain_2746	1	STRG.29627.1,Trinity_GG_33612_c0_g1_i1,blat.proc3829901.chain_2745	3
scaffold_22	alt_donor	508983	508984	-	asmbl_29868	none	STRG.24685.5	1	STRG.24685.2,STRG.24685.3,STRG.24685.4,Trinity_GG_30818_c0_g1_i13,Trinity_GG_30818_c0_g1_i17,Trinity_GG_30818_c0_g1_i19,Trinity_GG_30818_c0_g1_i8,blat.proc3829899.chain_1823,blat.proc3829899.chain_1824,blat.proc3829899.chain_1825,blat.proc3829899.chain_1827,blat.proc3829899.chain_1830,blat.proc3829899.chain_1831,blat.proc3829899.chain_1836	14
scaffold_19	alt_donor	11336381	11336382	-	asmbl_21588	none	STRG.22453.2,Trinity_GG_29505_c0_g1_i1,blat.proc3829897.chain_3138	3	STRG.22453.1,Trinity_GG_29505_c0_g1_i2,blat.proc3829897.chain_3139	3
scaffold_7	alt_acceptor	10710445	10710446	+	asmbl_51021	none	STRG.9238.1,blat.proc3829875.chain_1704	2	STRG.9238.2	1
scaffold_13	starts_in_intron	6114176	6114176	+	asmbl_10899	none	blat.proc3829879.chain_603	1	STRG.15905.1,STRG.15905.2,blat.proc3829879.chain_604	3
scaffold_5	spliced_intron	19374068	19374221	-	asmbl_46281,asmbl_46284	none	STRG.7028.1,STRG.7028.4,Trinity_GG_20939_c0_g1_i1,blat.proc3829889.chain_3036	4	STRG.7028.5,blat.proc3829889.chain_3037	2
scaffold_7	starts_in_intron	2857715	2857715	-	asmbl_49587	none	STRG.8705.3	1	STRG.8705.2,STRG.8705.4,blat.proc3829891.chain_1060	3
scaffold_3	retained_exon	7956311	7956397	-	asmbl_38956,asmbl_38958	none	STRG.3388.1,blat.proc3829887.chain_3108,blat.proc3829887.chain_3112	3	STRG.3388.2,blat.proc3829887.chain_3109,blat.proc3829887.chain_3111	3
scaffold_10	alternate_exon	4543801	4544090	-	asmbl_3214,asmbl_3215	none	STRG.12275.1,blat.proc3829893.chain_727	2	STRG.12275.2,blat.proc3829893.chain_729	2
scaffold_6	starts_in_intron	854564	854564	-	asmbl_48020	none	STRG.7143.4	1	STRG.7143.1,STRG.7143.3,blat.proc3829889.chain_3139,blat.proc3829889.chain_3140	4
scaffold_3	ends_in_intron	19834011	19834011	-	asmbl_39609	none	blat.proc3829889.chain_130	1	STRG.4097.1,blat.proc3829889.chain_131	2
scaffold_14	alt_acceptor	7234262	7234263	-	asmbl_13163	none	STRG.17139.1,STRG.17139.2,blat.proc3829895.chain_1832	3	STRG.17139.3,blat.proc3829895.chain_1831	2
scaffold_25	alternate_exon	2089236	2089384	-	asmbl_34047	none	blat.proc3829901.chain_540	1	STRG.27196.1	1
scaffold_19	retained_intron	12423727	12423837	+	asmbl_22604	none	Trinity_GG_12480_c0_g2_i2,blat.proc3829881.chain_3521	2	Trinity_GG_12480_c0_g2_i1,blat.proc3829881.chain_3522	2
scaffold_1	retained_intron	9897278	9897370	-	asmbl_571	none	blat.proc3829887.chain_559	1	STRG.661.1,STRG.661.2,blat.proc3829887.chain_557	3
scaffold_10	alt_donor	1292164	1292165	+	asmbl_4205	none	STRG.12009.1,blat.proc3829877.chain_668	2	STRG.12009.3,Trinity_GG_6651_c1_g2_i1,blat.proc3829877.chain_669	3
scaffold_17	alt_acceptor	11037508	11037509	-	asmbl_19307	none	STRG.20653.7,blat.proc3829897.chain_1559	2	STRG.20653.3,STRG.20653.5,STRG.20653.6,blat.proc3829897.chain_1558,blat.proc3829897.chain_1562	5
scaffold_24	alternate_exon	2397384	2397417	-	asmbl_32771	none	STRG.26439.1	1	STRG.26439.2,blat.proc3829899.chain_3500	2
scaffold_17	retained_intron	680623	680807	-	asmbl_18687	none	blat.proc3829897.chain_876	1	STRG.19908.1,STRG.19908.2,STRG.19908.3,blat.proc3829897.chain_873,blat.proc3829897.chain_874,blat.proc3829897.chain_875,blat.proc3829897.chain_877	7
scaffold_26	retained_intron	903117	903347	+	asmbl_35238,asmbl_35239	none	STRG.27880.2,Trinity_GG_15392_c0_g1_i1,Trinity_GG_15394_c0_g1_i1,blat.proc3829885.chain_886	4	STRG.27880.1,blat.proc3829885.chain_888	2
scaffold_4	retained_intron	18348146	18348526	+	asmbl_43446	none	STRG.5437.2	1	STRG.5437.1,blat.proc3829873.chain_1646	2
scaffold_26	alt_acceptor	7588367	7588368	+	asmbl_35657	none	STRG.28381.2	1	STRG.28381.1	1
scaffold_18	retained_exon	7169511	7169613	+	asmbl_20740	none	STRG.21401.1,Trinity_GG_11806_c0_g1_i3,blat.proc3829881.chain_2348	3	Trinity_GG_11806_c0_g1_i4,blat.proc3829881.chain_2349	2
scaffold_26	alternate_exon	5561971	5562154	+	asmbl_35548	none	STRG.28248.4	1	STRG.28248.1	1
scaffold_18	retained_intron	6423799	6424289	+	asmbl_20706	none	STRG.21358.2,Trinity_GG_11792_c1_g1_i1,blat.proc3829881.chain_2320,blat.proc3829881.chain_2323	4	STRG.21358.1,blat.proc3829897.chain_2221	2
scaffold_17	ends_in_intron	14125588	14125588	-	asmbl_19458	none	Trinity_GG_28687_c1_g1_i1,blat.proc3829897.chain_1706	2	STRG.20878.1	1
scaffold_11	alternate_exon	8381442	8381741	+	asmbl_5721	none	STRG.13842.2,blat.proc3829877.chain_2289	2	STRG.13842.1,blat.proc3829877.chain_2290	2
scaffold_9	ends_in_intron	14039598	14039598	+	asmbl_54499	none	Trinity_GG_6520_c0_g1_i2,blat.proc3829877.chain_435	2	STRG.11659.1,STRG.11659.2,Trinity_GG_6520_c0_g1_i3,Trinity_GG_6520_c0_g1_i4,blat.proc3829877.chain_436,blat.proc3829877.chain_438	6
scaffold_12	starts_in_intron	6542198	6542198	+	asmbl_8661	none	STRG.14744.2	1	STRG.14744.1,Trinity_GG_8141_c0_g1_i2,blat.proc3829877.chain_3229	3
scaffold_1	alt_acceptor	9176439	9176440	-	asmbl_528	none	STRG.606.1,blat.proc3829887.chain_518	2	STRG.606.2	1
scaffold_5	ends_in_intron	5055848	5055848	+	asmbl_44003	none	STRG.5949.4	1	STRG.5949.1,STRG.5949.2,STRG.5949.3,Trinity_GG_3276_c0_g1_i1,Trinity_GG_3276_c0_g2_i4,blat.proc3829873.chain_2142,blat.proc3829873.chain_2144,blat.proc3829873.chain_2145	8
scaffold_6	alt_donor	11514131	11514132	+	asmbl_47279	none	STRG.7939.2,Trinity_GG_4347_c0_g1_i2,blat.proc3829875.chain_318	3	STRG.7939.1,Trinity_GG_4347_c0_g1_i1,blat.proc3829875.chain_317	3
scaffold_8	alt_acceptor	8877806	8877807	+	asmbl_52023	none	STRG.10130.1,blat.proc3829875.chain_2643	2	STRG.10130.2,blat.proc3829875.chain_2644	2
scaffold_13	alt_acceptor	9337883	9337884	-	asmbl_9984	none	STRG.16186.2	1	STRG.16186.1,STRG.16186.3,STRG.16186.4,blat.proc3829895.chain_952,blat.proc3829895.chain_954	5
scaffold_14	retained_intron	12815903	12816062	-	asmbl_13596	none	STRG.17587.2,blat.proc3829895.chain_2274	2	STRG.17587.1,blat.proc3829895.chain_2275,blat.proc3829895.chain_2276	3
scaffold_14	retained_intron	6412534	6412614	+	asmbl_12056	none	blat.proc3829879.chain_1749	1	STRG.17074.1,blat.proc3829879.chain_1748	2
scaffold_2	retained_intron	14220832	14221010	-	asmbl_23598	none	blat.proc3829887.chain_2202	1	STRG.2413.1,blat.proc3829887.chain_2199,blat.proc3829887.chain_2200,blat.proc3829887.chain_2201,blat.proc3829887.chain_2203	5
scaffold_13	retained_intron	278905	279237	+	asmbl_10440	none	Trinity_GG_8495_c0_g1_i6,blat.proc3829879.chain_123	2	STRG.15416.1,STRG.15416.2,STRG.15416.3,STRG.15416.4,blat.proc3829879.chain_124,blat.proc3829879.chain_125,blat.proc3829879.chain_126,blat.proc3829879.chain_127	8
scaffold_25	skipped_exon	4575779	4576670	+	asmbl_33517,asmbl_33521	none	STRG.27377.3,Trinity_GG_15111_c0_g1_i3,Trinity_GG_15111_c0_g1_i4,blat.proc3829885.chain_438,blat.proc3829885.chain_439	5	STRG.27377.1,STRG.27377.2,Trinity_GG_15111_c0_g1_i12,Trinity_GG_15111_c0_g1_i9,blat.proc3829885.chain_437,blat.proc3829885.chain_440	6
scaffold_13	retained_intron	2271676	2271815	-	asmbl_9403,asmbl_9404,asmbl_9405,asmbl_9406	none	blat.proc3829895.chain_308,blat.proc3829895.chain_310,blat.proc3829895.chain_313,blat.proc3829895.chain_317	4	STRG.15533.1,STRG.15533.2,STRG.15533.3,blat.proc3829895.chain_309,blat.proc3829895.chain_311,blat.proc3829895.chain_316	6
scaffold_7	starts_in_intron	8070998	8070998	+	asmbl_50839,asmbl_50840	none	STRG.9038.3,blat.proc3829875.chain_1461	2	STRG.9038.1,STRG.9038.2,blat.proc3829875.chain_1462,blat.proc3829875.chain_1463	4
scaffold_3	alternate_exon	14352209	14352879	-	asmbl_39313	none	STRG.3772.1,blat.proc3829887.chain_3558	2	STRG.3772.2,Trinity_GG_19096_c0_g1_i1,blat.proc3829887.chain_3559	3
scaffold_20	ends_in_intron	5533323	5533323	-	asmbl_26687	none	Trinity_GG_29921_c0_g1_i1,blat.proc3829899.chain_173	2	STRG.23155.1,Trinity_GG_29921_c0_g1_i2,blat.proc3829899.chain_174	3
scaffold_11	skipped_exon	2845737	2846051	-	asmbl_6495	none	STRG.13416.2	1	STRG.13416.1,Trinity_GG_24535_c0_g1_i1,Trinity_GG_24535_c0_g2_i1,blat.proc3829893.chain_1896,blat.proc3829893.chain_1897	5
scaffold_18	alt_donor	1324799	1324800	+	asmbl_20362,asmbl_20363,asmbl_20366	none	STRG.21011.2,STRG.21011.3,blat.proc3829881.chain_1880	3	STRG.21011.1,blat.proc3829881.chain_1877,blat.proc3829881.chain_1878	3
scaffold_27	alternate_exon	2881922	2882465	+	asmbl_36099,asmbl_36100,asmbl_36103,asmbl_36104,asmbl_36106	none	STRG.28753.1,STRG.28753.2,STRG.28753.4,blat.proc3829885.chain_1817,blat.proc3829885.chain_1820,blat.proc3829885.chain_1822,blat.proc3829885.chain_1823	7	STRG.28753.3,blat.proc3829885.chain_1821	2
scaffold_19	starts_in_intron	8371	8371	+	asmbl_21970	none	STRG.21807.2	1	STRG.21807.1	1
scaffold_2	ends_in_intron	3349496	3349496	-	asmbl_22998	none	Trinity_GG_17981_c0_g1_i4,blat.proc3829887.chain_1607	2	STRG.1768.1,STRG.1768.2	2
scaffold_7	retained_exon	8508687	8508719	+	asmbl_50886	none	STRG.9068.4,blat.proc3829875.chain_1525	2	STRG.9068.1,blat.proc3829875.chain_1527	2
scaffold_17	retained_intron	1304001	1304135	-	asmbl_18739,asmbl_18744	none	blat.proc3829897.chain_929,blat.proc3829897.chain_930	2	STRG.19954.1,STRG.19954.2,blat.proc3829897.chain_927,blat.proc3829897.chain_928,blat.proc3829897.chain_931,blat.proc3829897.chain_932	6
scaffold_9	skipped_exon	643673	645133	+	asmbl_53761	none	STRG.10785.1,blat.proc3829875.chain_3238	2	STRG.10785.2,STRG.10785.3,STRG.10785.4	3
scaffold_4	spliced_intron	15728040	15728147	-	asmbl_41869,asmbl_41870	none	STRG.5163.1,blat.proc3829889.chain_1184,blat.proc3829889.chain_1185	3	STRG.5163.2,blat.proc3829889.chain_1186	2
scaffold_4	alternate_exon	3219610	3219666	-	asmbl_41155,asmbl_41156	none	STRG.4242.2,Trinity_GG_19336_c0_g1_i2,blat.proc3829889.chain_275	3	STRG.4242.1,Trinity_GG_19336_c0_g1_i1,blat.proc3829889.chain_274	3
scaffold_13	alt_acceptor	9333756	9333757	+	asmbl_11182	none	STRG.16185.1,Trinity_GG_8895_c0_g1_i1,blat.proc3829879.chain_923	3	STRG.16185.2,Trinity_GG_8895_c0_g1_i2,blat.proc3829879.chain_922	3
scaffold_20	skipped_exon	10113827	10114091	-	asmbl_27009	none	STRG.23549.3	1	STRG.23549.1,STRG.23549.2,blat.proc3829899.chain_564,blat.proc3829899.chain_565,blat.proc3829899.chain_567	5
scaffold_9	ends_in_intron	4043910	4043910	+	asmbl_53916	none	STRG.11004.1	1	STRG.11004.2	1
scaffold_13	ends_in_intron	6434654	6434654	-	asmbl_9746	none	Trinity_GG_25979_c0_g1_i1,blat.proc3829895.chain_711	2	STRG.15922.1,blat.proc3829895.chain_713	2
scaffold_2	starts_in_intron	10601045	10601045	+	asmbl_24744	none	Trinity_GG_1240_c0_g1_i1,blat.proc3829871.chain_2306	2	STRG.2220.1	1
scaffold_11	starts_in_intron	191649	191649	+	asmbl_5235	none	blat.proc3829877.chain_1751	1	STRG.13240.1,blat.proc3829877.chain_1752	2
scaffold_3	alt_donor	3271369	3271370	-	asmbl_38721,asmbl_38722	none	STRG.3088.2,blat.proc3829887.chain_2793	2	STRG.3088.1,blat.proc3829887.chain_2794,blat.proc3829887.chain_2796	3
scaffold_22	retained_exon	8237055	8237190	-	asmbl_30232,asmbl_30233	none	STRG.25164.1,STRG.25164.2,blat.proc3829899.chain_2248	3	STRG.25164.3	1
scaffold_3	alt_acceptor	13768925	13768926	+	asmbl_40416	none	STRG.3725.1,blat.proc3829873.chain_120	2	STRG.3725.3	1
scaffold_9	spliced_intron	9597034	9597966	-	asmbl_55174	none	STRG.11315.1,Trinity_GG_23261_c0_g1_i1,blat.proc3829891.chain_3425	3	STRG.11315.2,STRG.11315.3,Trinity_GG_23261_c0_g1_i3,blat.proc3829891.chain_3426	4
scaffold_21	ends_in_intron	1798912	1798912	+	asmbl_28388	none	blat.proc3829883.chain_978	1	STRG.23808.1,STRG.23808.2,blat.proc3829883.chain_975,blat.proc3829883.chain_976,blat.proc3829883.chain_977	5
scaffold_9	starts_in_intron	9851424	9851424	+	asmbl_54250,asmbl_54252,asmbl_54253	none	STRG.11344.3,Trinity_GG_6307_c0_g1_i5,blat.proc3829877.chain_63,blat.proc3829877.chain_66	4	STRG.11344.1,STRG.11344.2,blat.proc3829877.chain_64,blat.proc3829877.chain_67	4
scaffold_21	spliced_intron	10309452	10309508	-	asmbl_28059	none	STRG.24484.3	1	STRG.24484.1,Trinity_GG_30694_c0_g1_i1	2
scaffold_8	ends_in_intron	17401845	17401845	-	asmbl_53466	none	Trinity_GG_22932_c0_g1_i3,blat.proc3829891.chain_2812	2	STRG.10656.1,Trinity_GG_22932_c0_g1_i1,Trinity_GG_22932_c0_g1_i4,blat.proc3829891.chain_2809,blat.proc3829891.chain_2810	5
scaffold_17	spliced_intron	5124487	5126010	-	asmbl_18959	none	blat.proc3829897.chain_1202	1	STRG.20228.1,blat.proc3829897.chain_1198,blat.proc3829897.chain_1199	3
scaffold_18	spliced_intron	8726290	8727002	+	asmbl_20886	none	STRG.21533.4	1	STRG.21533.6,Trinity_GG_11882_c0_g1_i2,blat.proc3829881.chain_2487	3
scaffold_1	starts_in_intron	6341966	6341966	+	asmbl_1825	none	STRG.434.2	1	STRG.434.1,blat.proc3829871.chain_494	2
scaffold_11	retained_intron	11943331	11943516	-	asmbl_7028	none	Trinity_GG_24916_c2_g1_i1,blat.proc3829893.chain_2567	2	STRG.14160.1,STRG.14160.2,STRG.14160.3,STRG.14160.4,STRG.14160.5,STRG.14160.6,blat.proc3829893.chain_2558	7
scaffold_13	spliced_intron	12105019	12105196	+	asmbl_11315	none	STRG.16334.1,Trinity_GG_8989_c0_g1_i1,blat.proc3829879.chain_1102	3	STRG.16334.2	1
scaffold_4	alt_acceptor	14111068	14111069	+	asmbl_43179	none	STRG.5033.3	1	STRG.5033.1,STRG.5033.2,blat.proc3829873.chain_1349	3
scaffold_7	starts_in_intron	12452284	12452284	-	asmbl_50049	none	blat.proc3829891.chain_1616	1	STRG.9342.1,STRG.9342.2,STRG.9342.4,Trinity_GG_22282_c1_g1_i7,Trinity_GG_22282_c1_g1_i9,blat.proc3829891.chain_1604,blat.proc3829891.chain_1605,blat.proc3829891.chain_1606,blat.proc3829891.chain_1607,blat.proc3829891.chain_1608,blat.proc3829891.chain_1611,blat.proc3829891.chain_1614	12
scaffold_6	starts_in_intron	19115868	19115868	-	asmbl_49237	none	Trinity_GG_21904_c0_g1_i5	1	STRG.8568.1,STRG.8568.3,STRG.8568.5,Trinity_GG_21904_c0_g1_i1,Trinity_GG_21904_c0_g1_i3,blat.proc3829891.chain_897,blat.proc3829891.chain_898	7
scaffold_2	spliced_intron	16362712	16362798	+	asmbl_25159,asmbl_25160	none	STRG.2574.3,STRG.2574.4	2	STRG.2574.2,Trinity_GG_1456_c0_g1_i3,blat.proc3829871.chain_2763	3
scaffold_13	alt_acceptor	3098827	3098828	-	asmbl_9478	none	STRG.15604.1	1	STRG.15604.2,blat.proc3829895.chain_333	2
scaffold_1295	retained_intron	1529	1643	+	asmbl_9260	none	blat.proc3829885.chain_3495	1	STRG.30557.1,blat.proc3829885.chain_3496,blat.proc3829885.chain_3498	3
scaffold_9	retained_intron	8395341	8395484	+	asmbl_54156,asmbl_54160,asmbl_54161	none	STRG.11249.2,STRG.11249.3,blat.proc3829877.chain_19,blat.proc3829877.chain_21	4	STRG.11249.4,blat.proc3829877.chain_18	2
scaffold_5	starts_in_intron	15418413	15418413	-	asmbl_46051	none	Trinity_GG_20797_c0_g1_i2,blat.proc3829889.chain_2797	2	STRG.6723.1,STRG.6723.3,blat.proc3829889.chain_2796	3
scaffold_27	spliced_intron	5686546	5686785	+	asmbl_36316,asmbl_36318	none	STRG.28956.2,blat.proc3829885.chain_1996,blat.proc3829885.chain_1997	3	STRG.28956.1,STRG.28956.3,Trinity_GG_15988_c0_g1_i9,blat.proc3829885.chain_1994,blat.proc3829885.chain_1995,blat.proc3829885.chain_1998	6
scaffold_3	spliced_intron	1765661	1765894	+	asmbl_39834	none	STRG.2990.1	1	Trinity_GG_1694_c0_g2_i1,blat.proc3829871.chain_3165	2
scaffold_20	spliced_intron	11078627	11078744	-	asmbl_27054	none	STRG.23611.1,blat.proc3829899.chain_622	2	blat.proc3829899.chain_625,blat.proc3829899.chain_627	2
scaffold_14	alt_acceptor	11386935	11386936	-	asmbl_13461	none	STRG.17457.3,blat.proc3829895.chain_2095	2	STRG.17457.1,STRG.17457.2,blat.proc3829895.chain_2096,blat.proc3829895.chain_2098	4
scaffold_11	alt_acceptor	11937351	11937352	-	asmbl_7019,asmbl_7023	none	STRG.14160.3,STRG.14160.4	2	STRG.14160.2,STRG.14160.5	2
scaffold_10	retained_exon	13285342	13285507	-	asmbl_3772	none	STRG.12910.4,blat.proc3829893.chain_1435	2	STRG.12910.2,blat.proc3829893.chain_1434,blat.proc3829893.chain_1436	3
scaffold_2	starts_in_intron	19290944	19290944	-	asmbl_23877	none	blat.proc3829887.chain_2571	1	STRG.2796.1,STRG.2796.2,blat.proc3829887.chain_2570,blat.proc3829887.chain_2575	4
scaffold_6	starts_in_intron	1466507	1466507	+	asmbl_46656	none	blat.proc3829873.chain_3336	1	STRG.7179.1	1
scaffold_2	spliced_intron	15455614	15455683	+	asmbl_25063,asmbl_25064,asmbl_25065,asmbl_25066,asmbl_25067,asmbl_25069,asmbl_25070	none	STRG.2500.1,STRG.2500.2,blat.proc3829871.chain_2679,blat.proc3829871.chain_2680,blat.proc3829871.chain_2681,blat.proc3829871.chain_2682,blat.proc3829871.chain_2683,blat.proc3829871.chain_2685	8	blat.proc3829871.chain_2684	1
scaffold_7	spliced_intron	4931699	4933374	+	asmbl_50656,asmbl_50660,asmbl_50662	none	STRG.8834.2,blat.proc3829875.chain_1275,blat.proc3829875.chain_1276,blat.proc3829875.chain_1282	4	STRG.8834.3,Trinity_GG_4880_c0_g2_i1,blat.proc3829875.chain_1284	3
scaffold_3	alternate_exon	6247494	6249110	-	asmbl_38886	none	blat.proc3829887.chain_3031	1	STRG.3263.5,STRG.3263.6,blat.proc3829887.chain_3034	3
scaffold_3	alternate_exon	4523557	4523908	+	asmbl_39970	none	STRG.3146.2,blat.proc3829871.chain_3342	2	STRG.3146.1,blat.proc3829871.chain_3341	2
scaffold_5	retained_intron	12573137	12573215	-	asmbl_45855	none	blat.proc3829889.chain_2588	1	STRG.6489.1,blat.proc3829889.chain_2589	2
scaffold_12	skipped_exon	7958547	7958938	+	asmbl_8763,asmbl_8766	none	STRG.14845.2,STRG.14845.3,blat.proc3829877.chain_3277	3	STRG.14845.1,blat.proc3829877.chain_3276	2
scaffold_15	retained_intron	12742577	12743313	+	asmbl_14546,asmbl_14547	none	STRG.18731.5,blat.proc3829879.chain_3351	2	STRG.18731.1,STRG.18731.4,blat.proc3829879.chain_3350,blat.proc3829879.chain_3352	4
scaffold_21	alt_acceptor	1798784	1798785	+	asmbl_28385	none	STRG.23808.2,blat.proc3829883.chain_976	2	STRG.23808.1,blat.proc3829883.chain_975,blat.proc3829883.chain_977,blat.proc3829883.chain_978	4
scaffold_28	ends_in_intron	3927988	3927988	+	asmbl_38197	none	blat.proc3829885.chain_2654	1	STRG.29574.1,blat.proc3829885.chain_2653	2
scaffold_8	spliced_intron	10040800	10041129	-	asmbl_53090	none	STRG.10251.3,blat.proc3829891.chain_2364	2	STRG.10251.1,blat.proc3829891.chain_2365	2
scaffold_3	starts_in_intron	11453537	11453537	-	asmbl_39123	none	STRG.3579.1	1	STRG.3579.2,blat.proc3829887.chain_3343,blat.proc3829887.chain_3344	3
scaffold_28	alt_donor	5228280	5228281	-	asmbl_37583,asmbl_37585	none	STRG.29650.2,blat.proc3829901.chain_2672	2	STRG.29650.1,blat.proc3829901.chain_2671,blat.proc3829901.chain_2673	3
scaffold_3	retained_exon	18156321	18156395	-	asmbl_39543	none	STRG.4023.1,blat.proc3829889.chain_97	2	STRG.4023.3,STRG.4023.4	2
scaffold_6	alt_donor	11664	11665	-	asmbl_47956	none	STRG.7049.1	1	blat.proc3829889.chain_3048	1
scaffold_18	ends_in_intron	591569	591569	+	asmbl_20328	none	blat.proc3829881.chain_1856	1	STRG.20987.1,blat.proc3829881.chain_1858	2
scaffold_8	spliced_intron	9819500	9819912	+	asmbl_52092	none	STRG.10223.1,Trinity_GG_5647_c0_g1_i2,blat.proc3829875.chain_2660	3	STRG.10223.2,Trinity_GG_5647_c0_g2_i1,blat.proc3829875.chain_2664	3
scaffold_10	spliced_intron	11601926	11602115	+	asmbl_4749,asmbl_4750,asmbl_4751,asmbl_4758	none	STRG.12807.1,STRG.12807.2,STRG.12807.5,blat.proc3829877.chain_1380,blat.proc3829877.chain_1381,blat.proc3829877.chain_1384	6	blat.proc3829877.chain_1385	1
scaffold_15	spliced_intron	4231185	4231387	+	asmbl_14071,asmbl_14072	none	STRG.18160.2,blat.proc3829879.chain_2806,blat.proc3829879.chain_2808	3	Trinity_GG_9974_c0_g1_i8,blat.proc3829879.chain_2807	2
scaffold_3	spliced_intron	14259583	14259877	+	asmbl_40463	none	STRG.3764.2,blat.proc3829873.chain_104	2	STRG.3764.1,STRG.3764.4,Trinity_GG_2074_c0_g1_i1,Trinity_GG_2074_c0_g1_i4,blat.proc3829873.chain_102,blat.proc3829873.chain_103,blat.proc3829873.chain_105	7
scaffold_25	spliced_intron	7803694	7803782	-	asmbl_34378	none	STRG.27583.1,blat.proc3829901.chain_898	2	blat.proc3829901.chain_897	1
scaffold_1	starts_in_intron	5998931	5998931	-	asmbl_319	none	blat.proc3829887.chain_311	1	STRG.403.1,STRG.403.2,blat.proc3829887.chain_309,blat.proc3829887.chain_310	4
scaffold_4	retained_intron	5653074	5653166	-	asmbl_41358	none	blat.proc3829889.chain_604	1	STRG.4469.1,STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_606,blat.proc3829889.chain_608,blat.proc3829889.chain_611,blat.proc3829889.chain_612,blat.proc3829889.chain_613	10
scaffold_6	alt_donor	5195619	5195620	+	asmbl_46870	none	blat.proc3829873.chain_3583	1	STRG.7489.2,STRG.7489.3,STRG.7489.4,Trinity_GG_4091_c0_g1_i10,blat.proc3829873.chain_3581,blat.proc3829873.chain_3585,blat.proc3829873.chain_3587	7
scaffold_27	retained_intron	314564	314644	-	asmbl_36614	none	Trinity_GG_32948_c0_g1_i13	1	STRG.28538.1,STRG.28538.2,STRG.28538.3,blat.proc3829901.chain_1671,blat.proc3829901.chain_1673	5
scaffold_19	starts_in_intron	13006628	13006628	+	asmbl_22648	none	Trinity_GG_12510_c0_g1_i8,blat.proc3829881.chain_3579	2	STRG.22609.1,STRG.22609.2,Trinity_GG_12510_c0_g1_i1,Trinity_GG_12510_c0_g1_i10,Trinity_GG_12510_c0_g1_i11,Trinity_GG_12510_c0_g1_i5,Trinity_GG_12510_c0_g1_i6,blat.proc3829881.chain_3576,blat.proc3829881.chain_3578,blat.proc3829881.chain_3583,blat.proc3829881.chain_3584,blat.proc3829881.chain_3585	12
scaffold_12	skipped_exon	4558127	4560176	-	asmbl_7537	none	blat.proc3829893.chain_2972	1	STRG.14618.1,blat.proc3829893.chain_2974	2
scaffold_8	retained_intron	6902999	6903095	+	asmbl_51957	none	blat.proc3829875.chain_2542	1	STRG.10042.3,blat.proc3829875.chain_2539	2
scaffold_1	starts_in_intron	20345439	20345439	+	asmbl_2610	none	Trinity_GG_815_c2_g1_i6,blat.proc3829871.chain_1454	2	STRG.1398.2,STRG.1398.3,STRG.1398.4,STRG.1398.5,STRG.1398.6,blat.proc3829871.chain_1446,blat.proc3829871.chain_1450,blat.proc3829871.chain_1452,blat.proc3829871.chain_1453	9
scaffold_18	starts_in_intron	155905	155905	+	asmbl_20291	none	Trinity_GG_11531_c0_g1_i2,blat.proc3829881.chain_1811	2	STRG.20959.1,Trinity_GG_11531_c0_g1_i1,blat.proc3829881.chain_1812	3
scaffold_11	alternate_exon	3710236	3710260	-	asmbl_6541	none	STRG.13480.3	1	Trinity_GG_24560_c1_g1_i1,blat.proc3829893.chain_1939	2
scaffold_11	spliced_intron	8079637	8079771	+	asmbl_5678	none	STRG.13803.1,Trinity_GG_7572_c0_g1_i2,blat.proc3829877.chain_2231	3	Trinity_GG_7572_c0_g1_i1,Trinity_GG_7572_c0_g1_i3,Trinity_GG_7572_c0_g1_i4,blat.proc3829877.chain_2232,blat.proc3829877.chain_2233,blat.proc3829877.chain_2234	6
scaffold_1	alternate_exon	19358844	19359341	+	asmbl_2578	none	STRG.1346.2	1	STRG.1346.1,Trinity_GG_788_c0_g1_i2,blat.proc3829871.chain_1388	3
scaffold_6	alternate_exon	3054520	3056261	+	asmbl_46748	none	blat.proc3829873.chain_3441	1	blat.proc3829873.chain_3442	1
scaffold_8	starts_in_intron	6316947	6316947	-	asmbl_52868	none	blat.proc3829891.chain_2195	1	STRG.10031.1,blat.proc3829891.chain_2198	2
scaffold_1	spliced_intron	6682486	6683305	+	asmbl_1839	none	STRG.458.1,Trinity_GG_282_c0_g1_i2,blat.proc3829871.chain_500	3	Trinity_GG_282_c0_g1_i1,blat.proc3829871.chain_499	2
scaffold_13	retained_intron	2274573	2277261	-	asmbl_9400,asmbl_9404,asmbl_9405	none	STRG.15533.2,blat.proc3829895.chain_310,blat.proc3829895.chain_311,blat.proc3829895.chain_317	4	STRG.15533.3,blat.proc3829895.chain_309,blat.proc3829895.chain_313	3
scaffold_1	retained_intron	14182552	14182705	+	asmbl_2318	none	blat.proc3829871.chain_1040	1	STRG.1000.1,blat.proc3829871.chain_1041	2
scaffold_7	alt_acceptor	11873315	11873316	-	asmbl_49985	none	STRG.9297.1	1	STRG.9297.2,Trinity_GG_22229_c0_g1_i5,blat.proc3829891.chain_1490	3
scaffold_21	retained_intron	6617873	6617964	+	asmbl_28692	none	blat.proc3829883.chain_1356	1	STRG.24174.1,blat.proc3829883.chain_1357,blat.proc3829883.chain_1358,blat.proc3829883.chain_1359	4
scaffold_17	starts_in_intron	13530931	13530931	+	asmbl_18452	none	Trinity_GG_11449_c0_g1_i3,blat.proc3829881.chain_1675	2	STRG.20837.1	1
scaffold_27	alternate_exon	1972581	1972634	-	asmbl_36749	none	STRG.28657.3	1	STRG.28657.1,STRG.28657.2,blat.proc3829901.chain_1842	3
scaffold_1097	alt_donor	2395	2396	+	asmbl_5202,asmbl_5204	none	STRG.30514.1,STRG.30514.3	2	blat.proc3829885.chain_3327,blat.proc3829885.chain_3504	2
scaffold_1	spliced_intron	14323382	14323737	+	asmbl_2356,asmbl_2357,asmbl_2358,asmbl_2359,asmbl_2360	none	STRG.1024.1,STRG.1024.2,STRG.1024.3,STRG.1024.4,blat.proc3829871.chain_1126,blat.proc3829871.chain_1127,blat.proc3829871.chain_1128,blat.proc3829871.chain_1129,blat.proc3829871.chain_1130	9	Trinity_GG_621_c0_g1_i1	1
scaffold_12	alt_donor	16402135	16402136	+	asmbl_9137	none	blat.proc3829877.chain_3732	1	STRG.15385.5,Trinity_GG_8419_c0_g1_i7,blat.proc3829877.chain_3738	3
scaffold_7	alt_donor	10339734	10339735	-	asmbl_49929,asmbl_49930,asmbl_49932	none	STRG.9204.1,STRG.9204.2,Trinity_GG_22206_c0_g1_i1,Trinity_GG_22206_c0_g1_i2,blat.proc3829891.chain_1449,blat.proc3829891.chain_1450	6	STRG.9204.3	1
scaffold_3	alt_acceptor	14774473	14774474	-	asmbl_39371	none	STRG.3820.1,blat.proc3829887.chain_3625	2	STRG.3820.3	1
scaffold_6	alternate_exon	10823241	10823570	-	asmbl_48647	none	STRG.7888.1,blat.proc3829891.chain_167	2	STRG.7888.2,blat.proc3829891.chain_168	2
scaffold_24	spliced_intron	2462777	2462837	-	asmbl_32777	none	STRG.26454.1	1	Trinity_GG_31793_c0_g1_i1,blat.proc3829899.chain_3507	2
scaffold_18	retained_intron	8399580	8401325	+	asmbl_20860,asmbl_20862	none	STRG.21503.3,blat.proc3829881.chain_2516	2	STRG.21503.4	1
scaffold_7	alt_donor	12083096	12083097	+	asmbl_51096,asmbl_51097,asmbl_51098	none	STRG.9310.1,Trinity_GG_5111_c0_g1_i1,Trinity_GG_5111_c0_g1_i2,Trinity_GG_5111_c0_g1_i3,blat.proc3829875.chain_1656,blat.proc3829875.chain_1657,blat.proc3829875.chain_1658,blat.proc3829875.chain_1660	8	STRG.9310.3	1
scaffold_6	starts_in_intron	14132782	14132782	+	asmbl_47523	none	blat.proc3829875.chain_552	1	STRG.8170.1,STRG.8170.2,blat.proc3829875.chain_553	3
scaffold_26	retained_exon	4332659	4332682	-	asmbl_34822	none	STRG.28149.1	1	STRG.28149.2	1
scaffold_5	spliced_intron	2668980	2669850	-	asmbl_45279,asmbl_45281,asmbl_45284	none	STRG.5790.1,STRG.5790.2,blat.proc3829889.chain_1871,blat.proc3829889.chain_1872,blat.proc3829889.chain_1875	5	STRG.5790.3,Trinity_GG_20271_c0_g1_i7,blat.proc3829889.chain_1870	3
scaffold_1	alt_donor	5726797	5726798	-	asmbl_293	none	STRG.377.2	1	STRG.377.1,blat.proc3829887.chain_266,blat.proc3829887.chain_269	3
scaffold_9	spliced_intron	15495374	15495474	-	asmbl_55495,asmbl_55496	none	STRG.11737.1,STRG.11737.2,blat.proc3829893.chain_120,blat.proc3829893.chain_121	4	Trinity_GG_23499_c0_g1_i9,blat.proc3829893.chain_115	2
scaffold_27	starts_in_intron	2833462	2833462	+	asmbl_36088	none	blat.proc3829885.chain_1827	1	STRG.28748.1,STRG.28748.2,STRG.28748.3,blat.proc3829885.chain_1824,blat.proc3829885.chain_1826,blat.proc3829885.chain_1828	6
scaffold_10	alternate_exon	927707	927879	-	asmbl_2930	none	STRG.11959.2	1	Trinity_GG_23671_c0_g1_i2,blat.proc3829893.chain_421	2
scaffold_6	alternate_exon	12555119	12555173	-	asmbl_48760	none	STRG.8010.3	1	STRG.8010.1,STRG.8010.2,blat.proc3829891.chain_318,blat.proc3829891.chain_321	4
scaffold_10	retained_intron	8897245	8897475	-	asmbl_3538	none	blat.proc3829893.chain_1135	1	blat.proc3829893.chain_1127,blat.proc3829893.chain_1132,blat.proc3829893.chain_1134	3
scaffold_20	spliced_intron	10385418	10385493	+	asmbl_26113	none	STRG.23569.3	1	STRG.23569.1,STRG.23569.2,STRG.23569.5,Trinity_GG_12979_c0_g1_i2,Trinity_GG_12979_c0_g1_i5,Trinity_GG_12979_c0_g1_i6,blat.proc3829883.chain_590,blat.proc3829883.chain_591,blat.proc3829883.chain_592,blat.proc3829883.chain_594	10
scaffold_23	skipped_exon	9329762	9331870	+	asmbl_31088	none	STRG.26149.2	1	STRG.26149.1	1
scaffold_25	retained_exon	7344531	7344644	+	asmbl_33668	none	STRG.27572.2	1	STRG.27572.1,blat.proc3829885.chain_549	2
scaffold_2174	spliced_intron	839	882	-	asmbl_29074	none	STRG.30694.2	1	STRG.30694.1	1
scaffold_16	alt_donor	14627056	14627057	+	asmbl_17494,asmbl_17496	none	STRG.19842.1,STRG.19842.2,Trinity_GG_10867_c0_g1_i2,blat.proc3829881.chain_685	4	Trinity_GG_10867_c0_g1_i1,blat.proc3829881.chain_684	2
scaffold_25	starts_in_intron	800393	800393	-	asmbl_33993	none	STRG.27118.2	1	STRG.27118.1,STRG.27118.3	2
scaffold_28	starts_in_intron	2811794	2811794	-	asmbl_37409,asmbl_37414	none	blat.proc3829901.chain_2492,blat.proc3829901.chain_2497	2	STRG.29459.1,blat.proc3829901.chain_2491,blat.proc3829901.chain_2493,blat.proc3829901.chain_2494,blat.proc3829901.chain_2495,blat.proc3829901.chain_2496	6
scaffold_26	spliced_intron	9774294	9774402	+	asmbl_35786	none	STRG.28501.10	1	STRG.28501.2,STRG.28501.4,STRG.28501.6,Trinity_GG_15770_c0_g1_i1,blat.proc3829885.chain_1533,blat.proc3829885.chain_1534	6
scaffold_9	alt_acceptor	15212300	15212301	-	asmbl_55477	none	STRG.11719.3	1	STRG.11719.1,STRG.11719.2,blat.proc3829893.chain_58,blat.proc3829893.chain_59	4
scaffold_7	alt_acceptor	13960457	13960458	+	asmbl_51274,asmbl_51277	none	STRG.9485.1,Trinity_GG_5272_c0_g1_i2,blat.proc3829875.chain_1952,blat.proc3829875.chain_1954,blat.proc3829875.chain_1955	5	STRG.9485.2,STRG.9485.3,blat.proc3829875.chain_1953	3
scaffold_15	spliced_intron	12537084	12537192	-	asmbl_15598	none	STRG.18699.3,blat.proc3829895.chain_3446	2	blat.proc3829895.chain_3444	1
scaffold_13	retained_intron	4656102	4656354	+	asmbl_10801,asmbl_10803	none	STRG.15788.1,blat.proc3829879.chain_486	2	STRG.15788.2,STRG.15788.3,blat.proc3829879.chain_487	3
scaffold_9	retained_intron	15395597	15395679	+	asmbl_54549	none	Trinity_GG_6522_c0_g1_i6,blat.proc3829877.chain_441	2	STRG.11731.1,STRG.11731.2,STRG.11731.3,Trinity_GG_6522_c0_g1_i1,Trinity_GG_6522_c0_g1_i4,Trinity_GG_6522_c0_g1_i5,blat.proc3829877.chain_442,blat.proc3829877.chain_443,blat.proc3829877.chain_444	9
scaffold_4	spliced_intron	6188631	6188800	-	asmbl_41401	none	STRG.4487.3,Trinity_GG_19491_c0_g1_i3,blat.proc3829889.chain_542	3	STRG.4487.2,blat.proc3829889.chain_543	2
scaffold_6	ends_in_intron	17379848	17379848	+	asmbl_47685	none	blat.proc3829875.chain_819	1	STRG.8436.1,STRG.8436.2,Trinity_GG_4638_c0_g1_i3,blat.proc3829875.chain_821	4
scaffold_23	starts_in_intron	4091309	4091309	+	asmbl_30782	none	Trinity_GG_14243_c2_g1_i1,blat.proc3829883.chain_2695	2	STRG.25798.1,STRG.25798.2,Trinity_GG_14243_c0_g1_i1,blat.proc3829883.chain_2692,blat.proc3829883.chain_2693	5
scaffold_18	ends_in_intron	816526	816526	-	asmbl_19631	none	blat.proc3829897.chain_1824	1	blat.proc3829897.chain_1825	1
scaffold_5	alt_acceptor	15044032	15044033	-	asmbl_46014,asmbl_46015,asmbl_46020,asmbl_46021,asmbl_46022	none	STRG.6692.2,STRG.6692.3,STRG.6692.5,STRG.6692.6,STRG.6692.9	5	STRG.6692.4,STRG.6692.7,STRG.6692.8,Trinity_GG_20768_c0_g2_i1,blat.proc3829889.chain_2744	5
scaffold_3	ends_in_intron	14326512	14326512	-	asmbl_39308	none	blat.proc3829887.chain_3504	1	STRG.3770.1,blat.proc3829887.chain_3503	2
scaffold_5	alternate_exon	15549025	15549165	-	asmbl_46079,asmbl_46080	none	STRG.6737.2,STRG.6737.3	2	STRG.6737.1,blat.proc3829889.chain_2776	2
scaffold_8	spliced_intron	16499324	16499685	-	asmbl_53428	none	STRG.10621.5	1	STRG.10621.3,STRG.10621.4,blat.proc3829891.chain_2859,blat.proc3829891.chain_2862,blat.proc3829891.chain_2865,blat.proc3829891.chain_2871	6
scaffold_26	retained_intron	6320095	6320279	-	asmbl_34944,asmbl_34945	none	STRG.28312.1,STRG.28312.2,blat.proc3829901.chain_1454	3	STRG.28312.3,blat.proc3829901.chain_1455	2
scaffold_16	alt_acceptor	810169	810170	-	asmbl_16077,asmbl_16081	none	STRG.19052.1,STRG.19052.3,blat.proc3829895.chain_3749	3	STRG.19052.2,STRG.19052.4,blat.proc3829895.chain_3747	3
scaffold_2	retained_intron	15266613	15266717	+	asmbl_25020,asmbl_25021,asmbl_25024,asmbl_25025,asmbl_25026,asmbl_25027,asmbl_25028,asmbl_25029,asmbl_25030	none	STRG.2480.1,STRG.2480.2,blat.proc3829871.chain_2514,blat.proc3829871.chain_2515,blat.proc3829871.chain_2516,blat.proc3829871.chain_2517,blat.proc3829871.chain_2518,blat.proc3829871.chain_2519,blat.proc3829871.chain_2520,blat.proc3829871.chain_2522,blat.proc3829871.chain_2523	11	STRG.2480.3,Trinity_GG_1353_c0_g1_i14,blat.proc3829871.chain_2521	3
scaffold_26	ends_in_intron	7904522	7904522	-	asmbl_34994	none	STRG.28398.2	1	STRG.28398.1	1
scaffold_24	alt_acceptor	6801455	6801456	-	asmbl_32969,asmbl_32970	none	STRG.26711.1,STRG.26711.3,Trinity_GG_31940_c0_g1_i1,blat.proc3829901.chain_14,blat.proc3829901.chain_16	5	STRG.26711.2,blat.proc3829901.chain_15	2
scaffold_9	spliced_intron	17548809	17549033	-	asmbl_55619	none	STRG.11834.2	1	STRG.11834.1,Trinity_GG_23559_c0_g1_i1,blat.proc3829893.chain_226	3
scaffold_11	alternate_exon	12917666	12917717	-	asmbl_7088	none	STRG.14164.2,blat.proc3829893.chain_2606	2	STRG.14164.3	1
scaffold_22	alt_donor	11544135	11544136	+	asmbl_29696	none	blat.proc3829883.chain_2362	1	STRG.25485.1	1
scaffold_9	spliced_intron	6902533	6902622	-	asmbl_55047,asmbl_55048,asmbl_55049,asmbl_55051,asmbl_55052,asmbl_55053,asmbl_55054,asmbl_55056,asmbl_55057	none	STRG.11191.1,STRG.11191.2,STRG.11191.4,STRG.11191.5,blat.proc3829891.chain_3367,blat.proc3829891.chain_3368,blat.proc3829891.chain_3369,blat.proc3829891.chain_3370,blat.proc3829891.chain_3371,blat.proc3829891.chain_3372,blat.proc3829891.chain_3373,blat.proc3829891.chain_3375	12	STRG.11191.3,blat.proc3829891.chain_3366,blat.proc3829891.chain_3374	3
scaffold_27	retained_intron	5320907	5320932	-	asmbl_36958	none	Trinity_GG_33228_c0_g1_i1,blat.proc3829901.chain_2115	2	STRG.28931.1	1
scaffold_13	spliced_intron	7216203	7216365	+	asmbl_11007,asmbl_11009,asmbl_11011,asmbl_11012	none	STRG.16002.1,blat.proc3829879.chain_696,blat.proc3829879.chain_699,blat.proc3829879.chain_700,blat.proc3829879.chain_701	5	STRG.16002.2,blat.proc3829879.chain_695,blat.proc3829879.chain_698	3
scaffold_15	retained_intron	6794505	6794579	+	asmbl_14208	none	STRG.18289.3	1	STRG.18289.1,STRG.18289.2,Trinity_GG_10013_c0_g1_i1,Trinity_GG_10013_c0_g1_i2,blat.proc3829879.chain_2887,blat.proc3829879.chain_2888	6
scaffold_1	starts_in_intron	2010117	2010117	-	asmbl_103	none	blat.proc3829887.chain_39	1	STRG.127.1,blat.proc3829887.chain_40	2
scaffold_7	alternate_exon	12266986	12268982	+	asmbl_51116	none	STRG.9313.3	1	STRG.9313.4,Trinity_GG_5141_c0_g1_i5,Trinity_GG_5141_c0_g1_i6,Trinity_GG_5141_c0_g1_i8,blat.proc3829875.chain_1712,blat.proc3829875.chain_1713	6
scaffold_111	retained_exon	7050	7115	+	asmbl_7365	none	STRG.30136.1,Trinity_GG_16691_c2_g1_i2,blat.proc3829885.chain_3190	3	STRG.30136.2,Trinity_GG_16691_c2_g1_i3,blat.proc3829885.chain_3191,blat.proc3829901.chain_3403	4
scaffold_11	alt_donor	8426296	8426297	+	asmbl_5738,asmbl_5739	none	Trinity_GG_7631_c0_g1_i2,Trinity_GG_7631_c0_g1_i3,blat.proc3829877.chain_2325,blat.proc3829877.chain_2327	4	STRG.13849.1,STRG.13849.2	2
scaffold_19	spliced_intron	12208560	12208717	+	asmbl_22569,asmbl_22571	none	STRG.22538.1,STRG.22538.3,Trinity_GG_12469_c0_g1_i1,blat.proc3829881.chain_3486	4	STRG.22538.2,Trinity_GG_12469_c0_g1_i3,Trinity_GG_12469_c0_g1_i5,blat.proc3829881.chain_3484,blat.proc3829881.chain_3485	5
scaffold_15	spliced_intron	15414405	15414510	+	asmbl_14727,asmbl_14730,asmbl_14732,asmbl_14735,asmbl_14737	none	STRG.18922.3,STRG.18922.6,Trinity_GG_10387_c0_g1_i3,blat.proc3829879.chain_3550,blat.proc3829879.chain_3553,blat.proc3829879.chain_3554,blat.proc3829879.chain_3557	7	STRG.18922.1,STRG.18922.2,STRG.18922.4,STRG.18922.5,blat.proc3829879.chain_3551,blat.proc3829879.chain_3552,blat.proc3829879.chain_3556	7
scaffold_9	starts_in_intron	9368447	9368447	+	asmbl_54186	none	blat.proc3829875.chain_3691	1	STRG.11279.1,blat.proc3829875.chain_3692,blat.proc3829875.chain_3693	3
scaffold_3	retained_intron	192086	192185	+	asmbl_39764	none	Trinity_GG_1638_c0_g1_i2,blat.proc3829871.chain_3062,blat.proc3829871.chain_3063	3	STRG.2890.1	1
scaffold_11	retained_exon	14532929	14532976	+	asmbl_6067	none	STRG.14239.1,Trinity_GG_7860_c0_g1_i2,blat.proc3829877.chain_2747	3	STRG.14239.3,Trinity_GG_7860_c0_g1_i6,blat.proc3829877.chain_2745	3
scaffold_9	spliced_intron	12012109	12012204	+	asmbl_54391	none	STRG.11515.2	1	Trinity_GG_6412_c0_g1_i2,blat.proc3829877.chain_266	2
scaffold_13	skipped_exon	1378319	1378521	-	asmbl_9366,asmbl_9368,asmbl_9370	none	STRG.15491.1,STRG.15491.2,blat.proc3829895.chain_208,blat.proc3829895.chain_209	4	blat.proc3829895.chain_207,blat.proc3829895.chain_210	2
scaffold_4	spliced_intron	3884999	3885621	-	asmbl_41204	none	STRG.4295.4	1	STRG.4295.1,STRG.4295.2,STRG.4295.3,Trinity_GG_19422_c1_g1_i1,blat.proc3829889.chain_421,blat.proc3829889.chain_422,blat.proc3829889.chain_423	7
scaffold_16	ends_in_intron	294970	294970	-	asmbl_16015	none	STRG.19013.3,Trinity_GG_27685_c0_g1_i1,blat.proc3829897.chain_49	3	STRG.19013.1,blat.proc3829897.chain_50	2
scaffold_4	alternate_exon	6701398	6704323	+	asmbl_42753	none	STRG.4530.3	1	blat.proc3829873.chain_877	1
scaffold_15	starts_in_intron	182360	182360	+	asmbl_13895	none	Trinity_GG_9834_c4_g1_i1	1	STRG.17862.1,STRG.17862.2	2
scaffold_14	skipped_exon	3796395	3797745	+	asmbl_11939	none	STRG.16938.1,blat.proc3829879.chain_1667	2	STRG.16938.2	1
scaffold_14	starts_in_intron	9607117	9607117	+	asmbl_12276	none	Trinity_GG_9518_c1_g1_i2	1	STRG.17334.1,STRG.17334.2,blat.proc3829879.chain_2022	3
scaffold_22	skipped_exon	10044730	10045437	-	asmbl_30347	none	STRG.25340.3	1	STRG.25340.1,STRG.25340.2,STRG.25340.4	3
scaffold_8	spliced_intron	7986965	7987830	-	asmbl_52931,asmbl_52934	none	STRG.10092.1,STRG.10092.2,Trinity_GG_22656_c0_g1_i5,blat.proc3829891.chain_2262,blat.proc3829891.chain_2265	5	Trinity_GG_22656_c1_g1_i1,blat.proc3829891.chain_2261,blat.proc3829891.chain_2266	3
scaffold_1	retained_intron	14181858	14181932	+	asmbl_2319	none	STRG.1000.2	1	STRG.1000.1,blat.proc3829871.chain_1040,blat.proc3829871.chain_1041	3
scaffold_16	alt_acceptor	3571341	3571342	-	asmbl_16161	none	STRG.19160.3	1	STRG.19160.1,STRG.19160.2,Trinity_GG_27773_c0_g1_i6,Trinity_GG_27773_c0_g1_i8,blat.proc3829897.chain_190,blat.proc3829897.chain_192	6
scaffold_3	retained_intron	18346773	18346852	-	asmbl_39561	none	blat.proc3829873.chain_417	1	STRG.4038.1,blat.proc3829889.chain_77	2
scaffold_27	spliced_intron	3872568	3872679	+	asmbl_36193	none	STRG.28827.4	1	STRG.28827.3,Trinity_GG_15976_c0_g2_i22,blat.proc3829885.chain_1964	3
scaffold_14	retained_exon	9272349	9272763	-	asmbl_13342	none	STRG.17323.4,blat.proc3829895.chain_1999	2	STRG.17323.3	1
scaffold_7	spliced_intron	6042675	6043363	-	asmbl_49724,asmbl_49725	none	STRG.8899.2,STRG.8899.4	2	STRG.8899.1,Trinity_GG_22045_c0_g1_i2,Trinity_GG_22045_c0_g1_i5,blat.proc3829891.chain_1182	4
scaffold_3	retained_intron	12627468	12627566	-	asmbl_39170	none	STRG.3653.2,blat.proc3829887.chain_3389	2	STRG.3653.1,blat.proc3829887.chain_3390	2
scaffold_7	retained_intron	129101	129361	-	asmbl_49477,asmbl_49479,asmbl_49482,asmbl_49486	none	STRG.8585.1,STRG.8585.8,blat.proc3829891.chain_992,blat.proc3829891.chain_998	4	STRG.8585.4	1
scaffold_5	retained_intron	5061259	5061405	+	asmbl_44005	none	Trinity_GG_3232_c0_g1_i3,blat.proc3829873.chain_2051	2	STRG.5955.1,Trinity_GG_3232_c0_g1_i2,blat.proc3829873.chain_2050,blat.proc3829873.chain_2052	4
scaffold_8	alt_donor	18248542	18248543	-	asmbl_53534,asmbl_53535,asmbl_53539	none	STRG.10723.5,blat.proc3829891.chain_2919,blat.proc3829891.chain_2921,blat.proc3829891.chain_2925	4	STRG.10723.1,STRG.10723.2,STRG.10723.3	3
scaffold_13	alternate_exon	2068270	2068385	+	asmbl_10547	none	STRG.15526.2,blat.proc3829879.chain_249	2	STRG.15526.1,Trinity_GG_8552_c0_g1_i1,blat.proc3829879.chain_250	3
scaffold_10	alt_acceptor	6526312	6526313	-	asmbl_3391	none	STRG.12469.1,blat.proc3829893.chain_934	2	STRG.12469.2	1
scaffold_19	alt_acceptor	2780747	2780748	+	asmbl_22076,asmbl_22077,asmbl_22080	none	STRG.21950.1,STRG.21950.3,blat.proc3829881.chain_2913	3	STRG.21950.2,STRG.21950.4,STRG.21950.5	3
scaffold_4	spliced_intron	13365831	13366046	-	asmbl_41736	none	STRG.4965.2,blat.proc3829889.chain_1041	2	STRG.4965.1,Trinity_GG_19787_c0_g1_i2,blat.proc3829889.chain_1042	3
scaffold_17	alt_donor	8568832	8568833	-	asmbl_19149	none	blat.proc3829897.chain_1432	1	STRG.20459.1,blat.proc3829897.chain_1431	2
scaffold_15	starts_in_intron	389202	389202	+	asmbl_13914	none	blat.proc3829879.chain_2573	1	STRG.17879.2,blat.proc3829879.chain_2574	2
scaffold_1	skipped_exon	44087	45989	-	asmbl_2	none	STRG.19.1,blat.proc3829885.chain_3732	2	STRG.19.3	1
scaffold_13	spliced_intron	6602967	6603353	-	asmbl_9763	none	STRG.15934.2,blat.proc3829895.chain_721	2	STRG.15934.1,blat.proc3829895.chain_720	2
scaffold_19	starts_in_intron	6686232	6686232	+	asmbl_22235	none	Trinity_GG_12219_c0_g1_i4,blat.proc3829881.chain_3048	2	STRG.22182.1,Trinity_GG_12219_c0_g1_i3,blat.proc3829881.chain_3046,blat.proc3829881.chain_3047	4
scaffold_3	ends_in_intron	17107095	17107095	+	asmbl_40602	none	Trinity_GG_2160_c0_g1_i1,blat.proc3829873.chain_253	2	STRG.3948.1,Trinity_GG_2160_c0_g1_i2,blat.proc3829873.chain_252	3
scaffold_27	alt_acceptor	4153104	4153105	-	asmbl_36899	none	STRG.28853.2	1	STRG.28853.1,blat.proc3829901.chain_2038	2
scaffold_11	starts_in_intron	6394117	6394117	-	asmbl_6684	none	Trinity_GG_24659_c0_g1_i1,blat.proc3829893.chain_2112	2	STRG.13685.1,STRG.13685.2,STRG.13685.3,STRG.13685.4,Trinity_GG_24659_c0_g1_i2,Trinity_GG_24659_c0_g1_i3,blat.proc3829893.chain_2111,blat.proc3829893.chain_2113	8
scaffold_28	retained_exon	5361810	5361968	-	asmbl_37611	none	STRG.29662.1,Trinity_GG_33640_c0_g1_i1,blat.proc3829901.chain_2786	3	STRG.29662.2	1
scaffold_10	retained_intron	8492106	8492342	-	asmbl_3507,asmbl_3508	none	STRG.12599.2,blat.proc3829893.chain_1099	2	STRG.12599.1,Trinity_GG_24053_c0_g1_i1,blat.proc3829893.chain_1098	3
scaffold_14	retained_intron	1070202	1070398	+	asmbl_11762,asmbl_11765,asmbl_11769,asmbl_11770,asmbl_11773	none	STRG.16754.3,Trinity_GG_9205_c0_g1_i3,blat.proc3829879.chain_1437,blat.proc3829879.chain_1439,blat.proc3829879.chain_1440,blat.proc3829879.chain_1442	6	STRG.16754.4	1
scaffold_14	ends_in_intron	6449859	6449859	-	asmbl_13118	none	Trinity_GG_26609_c0_g1_i3,blat.proc3829895.chain_1809	2	STRG.17077.1,blat.proc3829895.chain_1808	2
scaffold_13	spliced_intron	398875	400388	-	asmbl_9303	none	Trinity_GG_25691_c0_g1_i10,blat.proc3829895.chain_228	2	Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i25,blat.proc3829895.chain_223,blat.proc3829895.chain_229	4
scaffold_17	ends_in_intron	5689579	5689579	-	asmbl_18986	none	Trinity_GG_28371_c0_g1_i1,blat.proc3829897.chain_1165	2	STRG.20259.1,blat.proc3829897.chain_1166	2
scaffold_9	spliced_intron	13304979	13305210	-	asmbl_55390,asmbl_55392,asmbl_55393	none	STRG.11618.1,STRG.11618.2,Trinity_GG_23412_c0_g1_i2,blat.proc3829891.chain_3709	4	STRG.11618.3,Trinity_GG_23412_c0_g1_i1,blat.proc3829891.chain_3713,blat.proc3829891.chain_3714	4
scaffold_20	skipped_exon	10313546	10315402	+	asmbl_26100	none	blat.proc3829883.chain_680,blat.proc3829883.chain_681	2	STRG.23562.1,blat.proc3829883.chain_679,blat.proc3829883.chain_682	3
scaffold_25	ends_in_intron	3293856	3293856	-	asmbl_34111	none	blat.proc3829901.chain_579	1	STRG.27260.1,STRG.27260.3,STRG.27260.4,STRG.27260.5,blat.proc3829901.chain_581,blat.proc3829901.chain_582	6
scaffold_4	alt_donor	13763114	13763115	-	asmbl_41750	none	blat.proc3829889.chain_1049	1	STRG.4997.1,blat.proc3829889.chain_1050	2
scaffold_11	alt_donor	4683514	4683515	-	asmbl_6585,asmbl_6586,asmbl_6587,asmbl_6588	none	STRG.13547.1,STRG.13547.2,STRG.13547.3,STRG.13547.5,blat.proc3829893.chain_2029,blat.proc3829893.chain_2031,blat.proc3829893.chain_2032	7	blat.proc3829893.chain_2030	1
scaffold_2	ends_in_intron	1490940	1490940	+	asmbl_24230	none	blat.proc3829871.chain_1681	1	STRG.1626.1,STRG.1626.2	2
scaffold_13	spliced_intron	4378784	4378885	+	asmbl_10766,asmbl_10767,asmbl_10768,asmbl_10770	none	STRG.15749.1,STRG.15749.2,STRG.15749.3,blat.proc3829879.chain_404	4	Trinity_GG_8637_c0_g1_i7,blat.proc3829879.chain_406	2
scaffold_27	alt_acceptor	2796618	2796619	+	asmbl_36071	none	blat.proc3829885.chain_1813	1	STRG.28740.1,blat.proc3829885.chain_1811	2
scaffold_4	alternate_exon	16804606	16804692	-	asmbl_41967	none	blat.proc3829889.chain_1241	1	STRG.5267.1,Trinity_GG_19912_c0_g1_i4,blat.proc3829889.chain_1242,blat.proc3829889.chain_1243	4
scaffold_17	alt_acceptor	13610511	13610512	+	asmbl_18460	none	STRG.20825.2	1	STRG.20825.1	1
scaffold_16	starts_in_intron	14708576	14708576	+	asmbl_17509	none	Trinity_GG_10848_c0_g1_i2,blat.proc3829881.chain_648	2	STRG.19853.1,blat.proc3829881.chain_650	2
scaffold_7	starts_in_intron	4873482	4873482	+	asmbl_50633	none	Trinity_GG_4853_c0_g2_i1,blat.proc3829875.chain_1236	2	Trinity_GG_4853_c0_g1_i3,blat.proc3829875.chain_1235	2
scaffold_25	alt_donor	9429093	9429094	+	asmbl_33802	none	STRG.27738.1,Trinity_GG_15317_c0_g1_i2,blat.proc3829885.chain_781	3	STRG.27738.2	1
scaffold_14	starts_in_intron	13891558	13891558	-	asmbl_13647	none	blat.proc3829895.chain_2385	1	STRG.17652.1,STRG.17652.2,STRG.17652.3,blat.proc3829895.chain_2384,blat.proc3829895.chain_2387	5
scaffold_2	alt_acceptor	3517727	3517728	-	asmbl_23010	none	STRG.1786.1	1	STRG.1786.2	1
scaffold_19	starts_in_intron	2651109	2651109	+	asmbl_22068	none	Trinity_GG_12147_c1_g1_i2,blat.proc3829881.chain_2918	2	STRG.21940.1,blat.proc3829881.chain_2917,blat.proc3829881.chain_2919	3
scaffold_17	starts_in_intron	3192673	3192673	+	asmbl_17834	none	Trinity_GG_11000_c0_g1_i4,blat.proc3829881.chain_911	2	STRG.20087.1	1
scaffold_17	spliced_intron	10048773	10050204	+	asmbl_18286	none	STRG.20609.1,blat.proc3829881.chain_1431	2	STRG.20609.3,Trinity_GG_11293_c0_g1_i1,Trinity_GG_11293_c1_g1_i1,blat.proc3829881.chain_1433,blat.proc3829881.chain_1434	5
scaffold_3	starts_in_intron	10513087	10513087	-	asmbl_39043	none	Trinity_GG_18850_c0_g1_i2,blat.proc3829887.chain_3186	2	STRG.3488.1,blat.proc3829887.chain_3187	2
scaffold_23	retained_intron	7938919	7939182	-	asmbl_31780	none	STRG.26079.1,Trinity_GG_31604_c0_g2_i1,blat.proc3829899.chain_3195	3	STRG.26079.3,blat.proc3829899.chain_3196	2
scaffold_3	skipped_exon	8995392	8998178	-	asmbl_39001,asmbl_39007	none	STRG.3425.1,blat.proc3829887.chain_3227,blat.proc3829887.chain_3230	3	STRG.3425.2,blat.proc3829887.chain_3231	2
scaffold_7	starts_in_intron	10710402	10710402	+	asmbl_51023	none	blat.proc3829875.chain_1705	1	STRG.9238.1,STRG.9238.2,blat.proc3829875.chain_1704	3
scaffold_11	alternate_exon	12918033	12918085	-	asmbl_7089	none	STRG.14164.3	1	STRG.14164.2,blat.proc3829893.chain_2606	2
scaffold_12	alternate_exon	7587420	7591171	-	asmbl_7727	none	STRG.14825.1,blat.proc3829893.chain_3222	2	Trinity_GG_25280_c0_g1_i2,blat.proc3829893.chain_3221	2
scaffold_6	alt_donor	15945018	15945019	+	asmbl_47620	none	STRG.8316.3	1	STRG.8316.2	1
scaffold_1	retained_intron	20347167	20348278	+	asmbl_2602,asmbl_2603,asmbl_2604,asmbl_2608,asmbl_2610,asmbl_2612,asmbl_2614,asmbl_2615	none	STRG.1398.2,STRG.1398.3,STRG.1398.4,STRG.1398.6,Trinity_GG_815_c2_g1_i5,Trinity_GG_815_c2_g1_i6,blat.proc3829871.chain_1446,blat.proc3829871.chain_1450,blat.proc3829871.chain_1451,blat.proc3829871.chain_1452,blat.proc3829871.chain_1453,blat.proc3829871.chain_1454	12	STRG.1398.5,Trinity_GG_815_c2_g1_i10,blat.proc3829871.chain_1448	3
scaffold_1	retained_intron	14320880	14321243	+	asmbl_2356,asmbl_2360	none	STRG.1024.2,blat.proc3829871.chain_1127,blat.proc3829871.chain_1128	3	STRG.1024.4,blat.proc3829871.chain_1130	2
scaffold_10	alt_donor	7110307	7110308	+	asmbl_4543	none	STRG.12521.2,blat.proc3829877.chain_1092	2	STRG.12521.1,blat.proc3829877.chain_1094	2
scaffold_15	alternate_exon	14665078	14665608	+	asmbl_14642	none	STRG.18874.1,Trinity_GG_10354_c0_g1_i4,blat.proc3829879.chain_3459	3	STRG.18874.2,STRG.18874.3,Trinity_GG_10354_c1_g1_i1,blat.proc3829879.chain_3461	4
scaffold_17	alternate_exon	5424354	5424525	-	asmbl_18974	none	STRG.20247.1,blat.proc3829897.chain_1160	2	STRG.20247.2,blat.proc3829897.chain_1161	2
scaffold_3	retained_intron	17849572	17849654	-	asmbl_39524	none	STRG.4009.1,blat.proc3829889.chain_81	2	STRG.4009.2	1
scaffold_7	alternate_exon	1524590	1524867	-	asmbl_49557	none	STRG.8640.2,Trinity_GG_21948_c0_g1_i2,blat.proc3829891.chain_1007	3	STRG.8640.1	1
scaffold_2	spliced_intron	18614248	18614705	-	asmbl_23821	none	STRG.2737.1,blat.proc3829887.chain_2515	2	blat.proc3829887.chain_2514	1
scaffold_6	retained_intron	7171271	7171397	+	asmbl_46986,asmbl_46992	none	STRG.7621.2,Trinity_GG_4175_c0_g1_i3,blat.proc3829873.chain_3738	3	STRG.7621.1,STRG.7621.3,STRG.7621.4,blat.proc3829873.chain_3739	4
scaffold_21	starts_in_intron	4100950	4100950	+	asmbl_28523	none	STRG.23984.5	1	STRG.23984.2,STRG.23984.4	2
scaffold_17	spliced_intron	14546213	14546320	+	asmbl_18532	none	STRG.20918.4	1	STRG.20918.2,Trinity_GG_11505_c0_g1_i1,Trinity_GG_11505_c0_g1_i2,blat.proc3829881.chain_1765	4
scaffold_18	spliced_intron	9787942	9788236	-	asmbl_20117	none	STRG.21574.1,blat.proc3829897.chain_2421	2	Trinity_GG_29074_c0_g1_i2,blat.proc3829897.chain_2420	2
scaffold_17	retained_intron	8951018	8951264	+	asmbl_18174	none	STRG.20504.2,blat.proc3829881.chain_1273	2	STRG.20504.1,blat.proc3829881.chain_1274	2
scaffold_28	retained_intron	5735192	5735278	-	asmbl_37643	none	STRG.29686.2,Trinity_GG_33646_c0_g1_i2,blat.proc3829901.chain_2794	3	STRG.29686.1,Trinity_GG_33646_c0_g1_i1,blat.proc3829901.chain_2793	3
scaffold_1	ends_in_intron	14309278	14309278	-	asmbl_892	none	STRG.1019.1,blat.proc3829887.chain_905	2	blat.proc3829887.chain_904	1
scaffold_24	skipped_exon	6726453	6728217	-	asmbl_32956	none	STRG.26704.2,blat.proc3829901.chain_21	2	STRG.26704.1,blat.proc3829901.chain_22,blat.proc3829901.chain_23,blat.proc3829901.chain_25	4
scaffold_7	alt_acceptor	5183354	5183355	-	asmbl_49688	none	STRG.8845.2,blat.proc3829891.chain_1158	2	STRG.8845.3	1
scaffold_18	retained_exon	3917889	3918211	-	asmbl_19824	none	STRG.21192.4	1	STRG.21192.5	1
scaffold_8	ends_in_intron	6306584	6306584	+	asmbl_51948	none	blat.proc3829875.chain_2463	1	STRG.10028.1,blat.proc3829875.chain_2461,blat.proc3829875.chain_2462	3
scaffold_18	spliced_intron	1886374	1887352	-	asmbl_19694,asmbl_19696,asmbl_19698,asmbl_19703	none	STRG.21072.1,blat.proc3829897.chain_1890,blat.proc3829897.chain_1895,blat.proc3829897.chain_1897	4	STRG.21072.5	1
scaffold_7	ends_in_intron	12260865	12260865	+	asmbl_51105	none	STRG.9311.1,blat.proc3829875.chain_1684	2	STRG.9311.2,Trinity_GG_5126_c0_g1_i2,blat.proc3829875.chain_1685	3
scaffold_25	retained_intron	9337232	9337354	+	asmbl_33801	none	blat.proc3829885.chain_774	1	STRG.27743.1,blat.proc3829885.chain_770,blat.proc3829885.chain_772,blat.proc3829885.chain_773,blat.proc3829885.chain_775	5
scaffold_2	retained_intron	2995343	2995363	-	asmbl_22974,asmbl_22976	none	STRG.1746.1,STRG.1746.2	2	STRG.1746.3	1
scaffold_27	alt_acceptor	941587	941588	-	asmbl_36676	none	STRG.28573.2,Trinity_GG_32961_c0_g1_i1,blat.proc3829901.chain_1706	3	STRG.28573.1,Trinity_GG_32961_c0_g1_i2,blat.proc3829901.chain_1704	3
scaffold_11	alternate_exon	4751650	4751704	+	asmbl_5479	none	blat.proc3829877.chain_2008	1	STRG.13563.1,STRG.13563.2,blat.proc3829877.chain_2010	3
scaffold_10	ends_in_intron	634675	634675	-	asmbl_2893	none	Trinity_GG_23652_c0_g1_i1,blat.proc3829893.chain_381	2	STRG.11933.1,STRG.11933.2,STRG.11933.3,STRG.11933.4,blat.proc3829893.chain_377,blat.proc3829893.chain_378	6
scaffold_3	alt_acceptor	5951042	5951043	-	asmbl_38836,asmbl_38837	none	STRG.3255.5,STRG.3255.7,blat.proc3829887.chain_3047	3	STRG.3255.3,blat.proc3829887.chain_3046	2
scaffold_3	alt_donor	3834945	3834946	-	asmbl_38740,asmbl_38743	none	STRG.3103.2,STRG.3103.3,blat.proc3829887.chain_2873	3	STRG.3103.1,blat.proc3829887.chain_2872	2
scaffold_16	retained_intron	7910151	7910238	+	asmbl_17159,asmbl_17160	none	Trinity_GG_10619_c0_g1_i1,blat.proc3829881.chain_260,blat.proc3829881.chain_262	3	STRG.19432.1,Trinity_GG_10619_c0_g1_i2,blat.proc3829881.chain_261	3
scaffold_28	ends_in_intron	3962904	3962904	+	asmbl_38199	none	Trinity_GG_16376_c0_g1_i1,blat.proc3829885.chain_2651	2	STRG.29572.1,blat.proc3829885.chain_2650	2
scaffold_27	alt_donor	4945193	4945194	+	asmbl_36282,asmbl_36283,asmbl_36284	none	STRG.28914.1,STRG.28914.2,STRG.28914.3,blat.proc3829885.chain_2069	4	STRG.28914.5,STRG.28914.6,blat.proc3829885.chain_2067	3
scaffold_5	alt_donor	4948779	4948780	+	asmbl_43984	none	Trinity_GG_3271_c0_g1_i1,blat.proc3829873.chain_2130	2	STRG.5946.3	1
scaffold_4	alternate_exon	4411118	4413749	+	asmbl_42580,asmbl_42590	none	STRG.4344.2,blat.proc3829873.chain_683,blat.proc3829873.chain_685	3	Trinity_GG_2404_c0_g1_i14,Trinity_GG_2404_c0_g1_i19,Trinity_GG_2404_c0_g1_i5,blat.proc3829873.chain_681,blat.proc3829873.chain_687,blat.proc3829873.chain_688,blat.proc3829873.chain_689,blat.proc3829873.chain_692,blat.proc3829873.chain_696	9
scaffold_1	alt_acceptor	12174629	12174630	+	asmbl_2173,asmbl_2175	none	STRG.846.1,STRG.846.3,blat.proc3829871.chain_925,blat.proc3829871.chain_926	4	STRG.846.2,STRG.846.4,blat.proc3829871.chain_923,blat.proc3829871.chain_927	4
scaffold_19	retained_intron	678886	678974	+	asmbl_22002	none	Trinity_GG_12091_c0_g1_i4,blat.proc3829881.chain_2825	2	blat.proc3829881.chain_2823	1
scaffold_9	retained_intron	9706825	9707000	+	asmbl_54211	none	STRG.11336.3,Trinity_GG_6324_c1_g1_i12,blat.proc3829877.chain_113	3	blat.proc3829877.chain_114	1
scaffold_28	alternate_exon	2267847	2268295	-	asmbl_37346	none	STRG.29380.3,Trinity_GG_33458_c0_g1_i4,blat.proc3829901.chain_2467	3	blat.proc3829901.chain_2471	1
scaffold_16	alt_acceptor	7369389	7369390	+	asmbl_17132	none	STRG.19387.3,blat.proc3829881.chain_227	2	STRG.19387.1,STRG.19387.2,blat.proc3829881.chain_228,blat.proc3829881.chain_229,blat.proc3829881.chain_230	5
scaffold_13	retained_exon	1361665	1361791	-	asmbl_9363	none	STRG.15492.1,blat.proc3829895.chain_135	2	STRG.15492.2	1
scaffold_25	spliced_intron	979268	979402	+	asmbl_33353	none	blat.proc3829885.chain_198	1	Trinity_GG_14961_c2_g1_i2,blat.proc3829885.chain_197	2
scaffold_28	ends_in_intron	3245892	3245892	+	asmbl_38156	none	Trinity_GG_16345_c0_g2_i1,blat.proc3829885.chain_2587	2	STRG.29522.1,STRG.29522.2	2
scaffold_4	alt_donor	19018130	19018131	-	asmbl_42147	none	STRG.5483.4	1	STRG.5483.2,STRG.5483.3	2
scaffold_26	retained_intron	6350817	6351171	-	asmbl_34955	none	STRG.28315.1,blat.proc3829901.chain_1401	2	STRG.28315.2,blat.proc3829901.chain_1403	2
scaffold_6	retained_intron	12479611	12479961	+	asmbl_47333,asmbl_47334,asmbl_47335	none	STRG.7999.1,STRG.7999.3,STRG.7999.4,blat.proc3829875.chain_407,blat.proc3829875.chain_409	5	STRG.7999.2,blat.proc3829875.chain_408	2
scaffold_1	spliced_intron	5208949	5209138	+	asmbl_1702,asmbl_1703,asmbl_1707,asmbl_1710,asmbl_1711,asmbl_1712,asmbl_1713	none	STRG.323.1,STRG.323.2,STRG.323.3,blat.proc3829871.chain_391,blat.proc3829871.chain_392,blat.proc3829871.chain_393,blat.proc3829871.chain_394,blat.proc3829871.chain_395	8	blat.proc3829871.chain_390	1
scaffold_13	starts_in_intron	7189711	7189711	-	asmbl_9817	none	STRG.15998.1,blat.proc3829895.chain_776	2	STRG.15998.2,blat.proc3829895.chain_775	2
scaffold_2	spliced_intron	7774792	7775188	-	asmbl_23298,asmbl_23299	none	STRG.2074.2,STRG.2074.3,blat.proc3829887.chain_1982,blat.proc3829887.chain_1984	4	STRG.2074.1,Trinity_GG_18174_c0_g1_i3,Trinity_GG_18174_c0_g1_i5,blat.proc3829887.chain_1981,blat.proc3829887.chain_1983,blat.proc3829887.chain_1985	6
scaffold_1	ends_in_intron	4568582	4568582	-	asmbl_212	none	blat.proc3829887.chain_132	1	STRG.277.1,STRG.277.2,STRG.277.3,STRG.277.4,blat.proc3829887.chain_133,blat.proc3829887.chain_136,blat.proc3829887.chain_138	7
scaffold_25	ends_in_intron	6069552	6069552	-	asmbl_34288	none	STRG.27475.2,blat.proc3829901.chain_723	2	STRG.27475.1,blat.proc3829901.chain_716,blat.proc3829901.chain_717,blat.proc3829901.chain_718,blat.proc3829901.chain_719,blat.proc3829901.chain_721,blat.proc3829901.chain_722	7
scaffold_1	starts_in_intron	16733318	16733318	+	asmbl_2482	none	Trinity_GG_694_c0_g1_i4,blat.proc3829871.chain_1243	2	STRG.1174.1,blat.proc3829871.chain_1241,blat.proc3829871.chain_1242	3
scaffold_17	retained_intron	13072493	13072592	-	asmbl_19393	none	STRG.20791.1,blat.proc3829897.chain_1717	2	STRG.20791.2,blat.proc3829897.chain_1718	2
scaffold_5	alternate_exon	7979716	7980265	-	asmbl_45577	none	STRG.6162.1,blat.proc3829889.chain_2183	2	STRG.6162.2	1
scaffold_19	alternate_exon	8178142	8178200	-	asmbl_21486	none	STRG.22255.2,Trinity_GG_29417_c0_g1_i1,blat.proc3829897.chain_2990	3	STRG.22255.1,blat.proc3829897.chain_2989	2
scaffold_18	alt_donor	5584881	5584882	-	asmbl_19902	none	STRG.21304.1,blat.proc3829897.chain_2194	2	STRG.21304.2	1
scaffold_15	starts_in_intron	7153303	7153303	+	asmbl_14220	none	Trinity_GG_10029_c0_g1_i3,blat.proc3829879.chain_2912	2	STRG.18296.1,Trinity_GG_10029_c0_g1_i1,blat.proc3829879.chain_2910	3
scaffold_16	alt_donor	3979150	3979151	-	asmbl_16195,asmbl_16196	none	STRG.19204.1,blat.proc3829897.chain_233	2	STRG.19204.2,STRG.19204.3,blat.proc3829897.chain_234	3
scaffold_17	spliced_intron	8871672	8871801	-	asmbl_19178,asmbl_19179	none	STRG.20494.1,STRG.20494.2,blat.proc3829897.chain_1446	3	STRG.20494.3,blat.proc3829897.chain_1445	2
scaffold_12	alt_acceptor	4352470	4352471	+	asmbl_8565	none	STRG.14601.1,blat.proc3829877.chain_3077	2	STRG.14601.2,blat.proc3829877.chain_3076	2
scaffold_1	spliced_intron	12450440	12450558	+	asmbl_2201,asmbl_2202,asmbl_2203,asmbl_2205	none	STRG.856.1,STRG.856.2,STRG.856.3,STRG.856.4,Trinity_GG_494_c0_g1_i1,Trinity_GG_494_c0_g1_i6,blat.proc3829871.chain_881,blat.proc3829871.chain_882,blat.proc3829871.chain_884	9	Trinity_GG_494_c0_g1_i4,blat.proc3829871.chain_885	2
scaffold_2	retained_intron	14561797	14561960	+	asmbl_24987	none	STRG.2454.3	1	STRG.2454.1,STRG.2454.2,STRG.2454.4,STRG.2454.5	4
scaffold_4	alt_acceptor	15296102	15296103	+	asmbl_43274	none	STRG.5126.1,blat.proc3829873.chain_1410,blat.proc3829873.chain_1412	3	blat.proc3829873.chain_1411	1
scaffold_13	spliced_intron	3734461	3734631	+	asmbl_10710,asmbl_10711	none	Trinity_GG_8631_c0_g1_i4,Trinity_GG_8631_c0_g1_i6,blat.proc3829879.chain_395,blat.proc3829879.chain_396	4	STRG.15686.3,Trinity_GG_8631_c0_g1_i8,blat.proc3829879.chain_390	3
scaffold_16	starts_in_intron	290519	290519	+	asmbl_16809	none	STRG.19012.3	1	STRG.19012.1,STRG.19012.2,blat.proc3829879.chain_3638,blat.proc3829879.chain_3639,blat.proc3829879.chain_3640	5
scaffold_27	alternate_exon	1609080	1609088	-	asmbl_36722	none	Trinity_GG_33010_c0_g1_i1,blat.proc3829901.chain_1789	2	STRG.28630.1	1
scaffold_23	starts_in_intron	3598093	3598093	+	asmbl_30754	none	Trinity_GG_14176_c0_g2_i1,blat.proc3829883.chain_2577	2	STRG.25761.2	1
scaffold_15	spliced_intron	15355053	15355143	+	asmbl_14705,asmbl_14711	none	STRG.18909.2,blat.proc3829879.chain_3499,blat.proc3829879.chain_3504	3	STRG.18909.1,Trinity_GG_10368_c0_g1_i4,Trinity_GG_10368_c0_g1_i9,blat.proc3829879.chain_3501,blat.proc3829879.chain_3502,blat.proc3829879.chain_3503	6
scaffold_17	starts_in_intron	14647402	14647402	-	asmbl_19490	none	blat.proc3829897.chain_1774	1	STRG.20926.1,blat.proc3829897.chain_1775	2
scaffold_6	skipped_exon	18923791	18924975	-	asmbl_49227	none	STRG.8554.2	1	STRG.8554.1,blat.proc3829891.chain_893	2
scaffold_13	spliced_intron	7717856	7718018	-	asmbl_9864,asmbl_9865	none	STRG.16043.2,blat.proc3829895.chain_749,blat.proc3829895.chain_750	3	blat.proc3829895.chain_751	1
scaffold_11	spliced_intron	16651862	16652153	+	asmbl_6150	none	STRG.14353.1,blat.proc3829877.chain_2841	2	blat.proc3829877.chain_2839,blat.proc3829877.chain_2842	2
scaffold_6	retained_intron	13317856	13318018	+	asmbl_47461	none	STRG.8084.1,Trinity_GG_4407_c0_g1_i1,blat.proc3829875.chain_443	3	STRG.8084.2,Trinity_GG_4407_c0_g1_i2,blat.proc3829875.chain_442	3
scaffold_26	alt_acceptor	6350817	6350818	-	asmbl_34952	none	STRG.28315.2,blat.proc3829901.chain_1403	2	STRG.28315.3,STRG.28315.4,STRG.28315.5,blat.proc3829901.chain_1404,blat.proc3829901.chain_1406	5
scaffold_14	ends_in_intron	3160691	3160691	+	asmbl_11879	none	blat.proc3829879.chain_1630	1	STRG.16893.1,STRG.16893.2,STRG.16893.3,blat.proc3829879.chain_1625,blat.proc3829879.chain_1626,blat.proc3829879.chain_1629,blat.proc3829879.chain_1631,blat.proc3829879.chain_1632,blat.proc3829879.chain_1633,blat.proc3829879.chain_1635,blat.proc3829879.chain_1636,blat.proc3829879.chain_1639,blat.proc3829879.chain_1640	13
scaffold_21	retained_exon	3126397	3126458	-	asmbl_27540,asmbl_27543	none	STRG.23930.4,Trinity_GG_30335_c0_g1_i6,blat.proc3829899.chain_977,blat.proc3829899.chain_981	4	STRG.23930.5,blat.proc3829899.chain_979	2
scaffold_25	skipped_exon	8697800	8700439	-	asmbl_34435	none	STRG.27678.3,blat.proc3829901.chain_953	2	STRG.27678.2,blat.proc3829901.chain_954,blat.proc3829901.chain_957,blat.proc3829901.chain_960	4
scaffold_18	spliced_intron	632566	632655	+	asmbl_20338	none	STRG.20993.3	1	STRG.20993.2,blat.proc3829881.chain_1870	2
scaffold_1	alternate_exon	1324283	1324438	+	asmbl_1468	none	STRG.79.1,Trinity_GG_53_c0_g1_i1,blat.proc3829871.chain_98	3	STRG.79.2	1
scaffold_11	spliced_intron	3110813	3110881	-	asmbl_6506	none	STRG.13430.2,blat.proc3829893.chain_1912	2	STRG.13430.1,blat.proc3829893.chain_1914	2
scaffold_2	alternate_exon	3373448	3373615	+	asmbl_24304	none	STRG.1776.2,blat.proc3829871.chain_1820	2	STRG.1776.1,blat.proc3829871.chain_1821	2
scaffold_4	alt_acceptor	4417088	4417089	+	asmbl_42571,asmbl_42577,asmbl_42580,asmbl_42585,asmbl_42591	none	STRG.4344.1,STRG.4344.2,STRG.4344.3,Trinity_GG_2404_c0_g1_i8,blat.proc3829873.chain_682,blat.proc3829873.chain_683,blat.proc3829873.chain_688,blat.proc3829873.chain_691,blat.proc3829873.chain_695	9	STRG.4344.4,Trinity_GG_2404_c0_g1_i5,blat.proc3829873.chain_680,blat.proc3829873.chain_696,blat.proc3829873.chain_697	5
scaffold_17	alt_acceptor	8317524	8317525	+	asmbl_18098	none	blat.proc3829881.chain_1250	1	STRG.20443.2,STRG.20443.3,blat.proc3829881.chain_1251	3
scaffold_8	ends_in_intron	18253145	18253145	+	asmbl_52538	none	Trinity_GG_5927_c0_g1_i1,blat.proc3829875.chain_3179	2	STRG.10721.2,STRG.10721.3,blat.proc3829875.chain_3178	3
scaffold_21	alt_acceptor	6288476	6288477	-	asmbl_27745	none	STRG.24146.1,blat.proc3829899.chain_1223	2	STRG.24146.2	1
scaffold_6	ends_in_intron	15088594	15088594	-	asmbl_48988	none	blat.proc3829891.chain_568	1	STRG.8265.1	1
scaffold_14	ends_in_intron	11577355	11577355	-	asmbl_13484	none	Trinity_GG_26806_c0_g1_i9,blat.proc3829895.chain_2175	2	STRG.17490.1,STRG.17490.2,STRG.17490.3,STRG.17490.4,STRG.17490.5,blat.proc3829895.chain_2172,blat.proc3829895.chain_2179,blat.proc3829895.chain_2180	8
scaffold_18	skipped_exon	4122717	4123966	+	asmbl_20524,asmbl_20526	none	STRG.21203.3,Trinity_GG_11620_c0_g1_i1,Trinity_GG_11620_c0_g1_i2,blat.proc3829881.chain_1990,blat.proc3829881.chain_1991	5	STRG.21203.1,STRG.21203.2,Trinity_GG_11620_c0_g1_i3,blat.proc3829881.chain_1992	4
scaffold_2	alternate_exon	17602403	17602439	+	asmbl_25217	none	Trinity_GG_1477_c0_g1_i2,blat.proc3829871.chain_2807	2	STRG.2645.1,blat.proc3829871.chain_2808	2
scaffold_20	spliced_intron	11948483	11948577	-	asmbl_27134	none	blat.proc3829899.chain_603	1	STRG.23687.2,STRG.23687.3,blat.proc3829899.chain_604	3
scaffold_22	retained_exon	512491	512561	-	asmbl_29853,asmbl_29865	none	STRG.24685.4,Trinity_GG_30818_c0_g1_i17,blat.proc3829899.chain_1830,blat.proc3829899.chain_1831	4	STRG.24685.2,STRG.24685.3,STRG.24685.5,Trinity_GG_30818_c0_g1_i13,Trinity_GG_30818_c0_g1_i19,blat.proc3829899.chain_1823,blat.proc3829899.chain_1824,blat.proc3829899.chain_1827,blat.proc3829899.chain_1836	9
scaffold_10	retained_exon	17684425	17684546	+	asmbl_5062	none	STRG.13207.1	1	STRG.13207.2	1
scaffold_1	retained_intron	6682486	6683305	+	asmbl_1840	none	Trinity_GG_282_c0_g1_i1,blat.proc3829871.chain_499	2	STRG.458.1,Trinity_GG_282_c0_g1_i2,blat.proc3829871.chain_500	3
scaffold_2	alternate_exon	6507524	6510600	-	asmbl_23232	none	STRG.2013.1,blat.proc3829887.chain_1931	2	Trinity_GG_18148_c0_g1_i2,blat.proc3829887.chain_1933	2
scaffold_5	spliced_intron	8792001	8792555	+	asmbl_44233,asmbl_44234,asmbl_44237	none	STRG.6209.1,STRG.6209.2,blat.proc3829873.chain_2346,blat.proc3829873.chain_2349,blat.proc3829873.chain_2350	5	blat.proc3829873.chain_2347	1
scaffold_10	alt_acceptor	11918877	11918878	-	asmbl_3708	none	STRG.12818.2	1	STRG.12818.1,blat.proc3829893.chain_1294,blat.proc3829893.chain_1295	3
scaffold_19	alt_acceptor	12972869	12972870	-	asmbl_21786	none	STRG.22606.5,Trinity_GG_29578_c0_g1_i5,blat.proc3829897.chain_3321	3	STRG.22606.4,Trinity_GG_29578_c0_g1_i4,Trinity_GG_29578_c0_g1_i8,blat.proc3829897.chain_3320,blat.proc3829897.chain_3323	5
scaffold_16	starts_in_intron	11396277	11396277	-	asmbl_16521,asmbl_16523	none	Trinity_GG_28017_c0_g1_i1,blat.proc3829897.chain_605,blat.proc3829897.chain_607	3	STRG.19663.3,STRG.19663.4,STRG.19663.5,blat.proc3829897.chain_606	4
scaffold_5	skipped_exon	204918	205658	-	asmbl_45148	none	STRG.5583.2,blat.proc3829889.chain_1688	2	STRG.5583.1,blat.proc3829889.chain_1689	2
scaffold_18	retained_exon	3917647	3917798	-	asmbl_19819	none	blat.proc3829897.chain_2089	1	STRG.21192.4	1
scaffold_23	retained_intron	2160936	2161036	+	asmbl_30680	none	blat.proc3829883.chain_2498	1	STRG.25668.1,blat.proc3829883.chain_2497	2
scaffold_20	retained_intron	11672198	11672271	-	asmbl_27100	none	STRG.23656.2,blat.proc3829899.chain_654	2	STRG.23656.3,blat.proc3829899.chain_650,blat.proc3829899.chain_651	3
scaffold_11	starts_in_intron	172395	172395	+	asmbl_5221	none	STRG.13231.6	1	STRG.13231.1,STRG.13231.2,STRG.13231.3,STRG.13231.4,STRG.13231.5,blat.proc3829877.chain_1757	6
scaffold_26	ends_in_intron	4113054	4113054	+	asmbl_35389	none	blat.proc3829885.chain_986	1	STRG.28092.1	1
scaffold_8	spliced_intron	11852641	11854227	+	asmbl_52271	none	blat.proc3829875.chain_2980	1	STRG.10382.2,blat.proc3829875.chain_2966,blat.proc3829875.chain_2970,blat.proc3829875.chain_2971,blat.proc3829875.chain_2973,blat.proc3829875.chain_2976,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978	8
scaffold_1	alternate_exon	2792650	2795383	+	asmbl_1547,asmbl_1548	none	STRG.177.1,STRG.177.2,Trinity_GG_124_c1_g1_i1,blat.proc3829871.chain_205,blat.proc3829871.chain_206	5	blat.proc3829871.chain_204	1
scaffold_10	alt_acceptor	6526309	6526310	-	asmbl_3392	none	STRG.12469.2	1	STRG.12469.1,blat.proc3829893.chain_934	2
scaffold_4	skipped_exon	19371845	19374246	+	asmbl_43482	none	blat.proc3829873.chain_1677	1	STRG.5522.1,blat.proc3829873.chain_1678	2
scaffold_17	alt_acceptor	10014850	10014851	+	asmbl_18277	none	STRG.20604.2,Trinity_GG_11292_c0_g1_i1	2	STRG.20604.1,Trinity_GG_11292_c0_g1_i2	2
scaffold_7	alternate_exon	1227349	1233709	+	asmbl_50478	none	STRG.8627.3	1	blat.proc3829875.chain_1043	1
scaffold_21	alternate_exon	3155826	3169153	+	asmbl_28491,asmbl_28493	none	blat.proc3829883.chain_1049,blat.proc3829883.chain_1055	2	STRG.23945.6,blat.proc3829883.chain_1048	2
scaffold_16	retained_intron	15229002	15229042	+	asmbl_17524,asmbl_17525	none	STRG.19866.1,STRG.19866.3	2	STRG.19866.4	1
scaffold_5	spliced_intron	13316252	13316346	-	asmbl_45915,asmbl_45919,asmbl_45920	none	STRG.6578.1,STRG.6578.2,blat.proc3829889.chain_2547	3	blat.proc3829889.chain_2544,blat.proc3829889.chain_2545,blat.proc3829889.chain_2546	3
scaffold_15	ends_in_intron	15867904	15867904	+	asmbl_14784	none	Trinity_GG_10396_c0_g1_i1,blat.proc3829879.chain_3577	2	STRG.18959.1,STRG.18959.2,STRG.18959.3,blat.proc3829879.chain_3576	4
scaffold_16	alternate_exon	11335563	11336789	+	asmbl_17381	none	STRG.19652.4,blat.proc3829881.chain_554,blat.proc3829881.chain_555	3	STRG.19652.1,STRG.19652.2,blat.proc3829881.chain_553	3
scaffold_2	alt_acceptor	923015	923016	+	asmbl_24171,asmbl_24173,asmbl_24175,asmbl_24176,asmbl_24177	none	STRG.1569.1,STRG.1569.3,STRG.1569.4,blat.proc3829871.chain_1534,blat.proc3829871.chain_1537,blat.proc3829871.chain_1542	6	blat.proc3829871.chain_1535	1
scaffold_28	alt_acceptor	2616372	2616373	+	asmbl_38080	none	STRG.29414.2	1	STRG.29414.1	1
scaffold_13	alt_acceptor	519723	519724	+	asmbl_10453	none	Trinity_GG_8491_c0_g1_i2,blat.proc3829879.chain_113	2	STRG.15434.2,STRG.15434.4,blat.proc3829879.chain_115	3
scaffold_10	retained_exon	6673015	6673106	-	asmbl_3403	none	STRG.12494.6,Trinity_GG_24019_c0_g1_i11,blat.proc3829893.chain_1028	3	blat.proc3829893.chain_1027,blat.proc3829893.chain_1029,blat.proc3829893.chain_1032	3
scaffold_7	ends_in_intron	6910864	6910864	-	asmbl_49750	none	blat.proc3829891.chain_1274	1	STRG.8956.1,blat.proc3829891.chain_1273	2
scaffold_11	alt_donor	7668430	7668431	-	asmbl_6773	none	STRG.13764.3	1	STRG.13764.1,STRG.13764.2,Trinity_GG_24733_c1_g1_i1,blat.proc3829893.chain_2246	4
scaffold_26	retained_intron	5561589	5561755	+	asmbl_35552,asmbl_35555	none	STRG.28249.2,Trinity_GG_15578_c2_g1_i1,blat.proc3829885.chain_1209	3	STRG.28249.1,blat.proc3829885.chain_1211	2
scaffold_10	spliced_intron	11970420	11970501	+	asmbl_4782,asmbl_4790,asmbl_4791	none	STRG.12831.1,blat.proc3829877.chain_1313,blat.proc3829877.chain_1317,blat.proc3829877.chain_1321	4	blat.proc3829877.chain_1319,blat.proc3829877.chain_1322	2
scaffold_28	retained_intron	3968426	3968455	+	asmbl_38204	none	STRG.29577.1	1	STRG.29577.2	1
scaffold_228	retained_exon	5060	5089	-	asmbl_30580	none	STRG.30221.1,blat.proc3829901.chain_3286	2	STRG.30221.2,blat.proc3829901.chain_3287	2
scaffold_13	alt_donor	1042355	1042356	+	asmbl_10496	none	STRG.15471.2	1	STRG.15471.1,blat.proc3829879.chain_149	2
scaffold_9	alt_donor	16568288	16568289	+	asmbl_54574,asmbl_54576,asmbl_54577,asmbl_54578,asmbl_54579	none	STRG.11798.1,Trinity_GG_6586_c0_g1_i14,Trinity_GG_6586_c0_g1_i15,Trinity_GG_6586_c0_g1_i21,Trinity_GG_6586_c0_g1_i5,blat.proc3829877.chain_554,blat.proc3829877.chain_556,blat.proc3829877.chain_557,blat.proc3829877.chain_558	9	STRG.11798.2	1
scaffold_2	retained_exon	2879362	2879391	-	asmbl_22956,asmbl_22960,asmbl_22964,asmbl_22965,asmbl_22966	none	STRG.1733.2,STRG.1733.4,blat.proc3829887.chain_1494,blat.proc3829887.chain_1496,blat.proc3829887.chain_1498,blat.proc3829887.chain_1500	6	STRG.1733.1,STRG.1733.3,blat.proc3829887.chain_1492,blat.proc3829887.chain_1493,blat.proc3829887.chain_1497	5
scaffold_14	starts_in_intron	12827132	12827132	-	asmbl_13598	none	STRG.17589.4,blat.proc3829895.chain_2343	2	STRG.17589.1,blat.proc3829895.chain_2339	2
scaffold_17	retained_intron	11508780	11509171	+	asmbl_18353	none	Trinity_GG_11332_c1_g1_i1,blat.proc3829881.chain_1501	2	STRG.20683.1,blat.proc3829881.chain_1500	2
scaffold_6	alt_donor	2759859	2759860	+	asmbl_46721	none	STRG.7265.2	1	STRG.7265.1,blat.proc3829873.chain_3399	2
scaffold_19	alt_acceptor	8820146	8820147	+	asmbl_22364	none	STRG.22325.1,blat.proc3829881.chain_3253	2	STRG.22325.2,STRG.22325.4	2
scaffold_8	ends_in_intron	16504567	16504567	-	asmbl_53407	none	Trinity_GG_22960_c1_g1_i1,blat.proc3829891.chain_2874	2	STRG.10621.1,STRG.10621.3,STRG.10621.4,STRG.10621.5,Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2859,blat.proc3829891.chain_2860,blat.proc3829891.chain_2862,blat.proc3829891.chain_2863,blat.proc3829891.chain_2864,blat.proc3829891.chain_2865,blat.proc3829891.chain_2867,blat.proc3829891.chain_2868,blat.proc3829891.chain_2869,blat.proc3829891.chain_2870,blat.proc3829891.chain_2871	20
scaffold_4	alt_donor	16665781	16665782	+	asmbl_43332	none	STRG.5253.1,blat.proc3829873.chain_1525	2	STRG.5253.2,blat.proc3829873.chain_1524	2
scaffold_1	alt_acceptor	16717449	16717450	-	asmbl_1010,asmbl_1011,asmbl_1012	none	STRG.1175.3,STRG.1175.4,STRG.1175.6,blat.proc3829887.chain_1050,blat.proc3829887.chain_1051	5	STRG.1175.2,STRG.1175.5	2
scaffold_25	skipped_exon	6769681	6771338	+	asmbl_33644	none	STRG.27525.1	1	STRG.27525.2	1
scaffold_3	retained_intron	6661802	6662072	+	asmbl_40073	none	STRG.3291.3,Trinity_GG_1863_c0_g1_i4,blat.proc3829871.chain_3475	3	STRG.3291.1,STRG.3291.2,blat.proc3829871.chain_3474	3
scaffold_6	spliced_intron	12654661	12655318	+	asmbl_47368	none	STRG.8019.2	1	STRG.8019.1,Trinity_GG_4365_c0_g1_i6,blat.proc3829875.chain_366,blat.proc3829875.chain_369	4
scaffold_13	alt_donor	272653	272654	+	asmbl_10438	none	STRG.15416.3	1	STRG.15416.2,blat.proc3829879.chain_124,blat.proc3829879.chain_127	3
scaffold_10	ends_in_intron	11108324	11108324	+	asmbl_4727	none	blat.proc3829877.chain_1337	1	STRG.12772.1,blat.proc3829877.chain_1339	2
scaffold_24	retained_intron	8992308	8992351	+	asmbl_32480	none	STRG.26905.1,Trinity_GG_14888_c0_g1_i2,blat.proc3829885.chain_59	3	STRG.26905.2	1
scaffold_22	starts_in_intron	4565229	4565229	+	asmbl_29314	none	STRG.24870.2,blat.proc3829883.chain_1904	2	STRG.24870.1,blat.proc3829883.chain_1903,blat.proc3829883.chain_1908	3
scaffold_19	alt_acceptor	11528935	11528936	-	asmbl_21630	none	STRG.22476.4	1	STRG.22476.1,blat.proc3829897.chain_3123	2
scaffold_14	alt_donor	405059	405060	+	asmbl_11720,asmbl_11721,asmbl_11722,asmbl_11723	none	STRG.16722.1,STRG.16722.3,STRG.16722.4,Trinity_GG_9219_c0_g1_i21,Trinity_GG_9219_c0_g1_i3,Trinity_GG_9219_c0_g1_i6,blat.proc3829879.chain_1465,blat.proc3829879.chain_1468,blat.proc3829879.chain_1474	9	blat.proc3829879.chain_1469	1
scaffold_7	retained_intron	5235519	5236725	+	asmbl_50681,asmbl_50687	none	STRG.8853.2,blat.proc3829875.chain_1293	2	STRG.8853.1,blat.proc3829875.chain_1292,blat.proc3829875.chain_1296	3
scaffold_16	retained_intron	14510356	14510447	-	asmbl_16629	none	blat.proc3829897.chain_770	1	STRG.19819.1,Trinity_GG_28131_c0_g1_i2,blat.proc3829897.chain_771,blat.proc3829897.chain_772,blat.proc3829897.chain_773,blat.proc3829897.chain_774	6
scaffold_10	alternate_exon	4342418	4342510	-	asmbl_3202	none	STRG.12269.2,blat.proc3829893.chain_725	2	STRG.12269.1	1
scaffold_13	spliced_intron	2338672	2339178	+	asmbl_10574,asmbl_10576,asmbl_10579,asmbl_10582,asmbl_10584,asmbl_10585,asmbl_10588,asmbl_10589,asmbl_10590,asmbl_10591	none	STRG.15543.10,STRG.15543.3,STRG.15543.4,STRG.15543.6,STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161,blat.proc3829879.chain_162,blat.proc3829879.chain_164	11	STRG.15543.11,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_157	5
scaffold_8	retained_exon	11572891	11572942	+	asmbl_52226	none	STRG.10346.1,blat.proc3829875.chain_2874	2	STRG.10346.2,Trinity_GG_5770_c0_g1_i3,blat.proc3829875.chain_2875	3
scaffold_3	starts_in_intron	6659145	6659145	+	asmbl_40071	none	Trinity_GG_1861_c0_g1_i10,blat.proc3829871.chain_3471	2	STRG.3290.1,STRG.3290.2,STRG.3290.3,STRG.3290.4,STRG.3290.5,blat.proc3829871.chain_3459,blat.proc3829871.chain_3460,blat.proc3829871.chain_3461,blat.proc3829871.chain_3464,blat.proc3829871.chain_3468,blat.proc3829871.chain_3469	11
scaffold_2	starts_in_intron	9197816	9197816	+	asmbl_24710	none	STRG.2168.3	1	STRG.2168.1,STRG.2168.2,Trinity_GG_1194_c0_g1_i2,blat.proc3829871.chain_2227	4
scaffold_1	alternate_exon	12938395	12938554	-	asmbl_786	none	STRG.923.3,STRG.923.4,blat.proc3829887.chain_785	3	STRG.923.2,blat.proc3829887.chain_784	2
scaffold_13	spliced_intron	4351	4448	+	asmbl_10415,asmbl_10416,asmbl_10421,asmbl_10422	none	STRG.15408.1,STRG.15408.2,Trinity_GG_8474_c0_g1_i2,Trinity_GG_8474_c0_g1_i6,Trinity_GG_8474_c0_g1_i7,blat.proc3829879.chain_71,blat.proc3829879.chain_76,blat.proc3829879.chain_78	8	STRG.15408.3,Trinity_GG_8474_c0_g1_i1,blat.proc3829879.chain_75	3
scaffold_26	alternate_exon	6706964	6710998	-	asmbl_34975	none	STRG.28358.2	1	STRG.28358.3,blat.proc3829901.chain_1521,blat.proc3829901.chain_1525	3
scaffold_7	spliced_intron	13891449	13891712	+	asmbl_51264,asmbl_51267	none	STRG.9476.1,STRG.9476.2,Trinity_GG_5267_c0_g1_i1,blat.proc3829875.chain_1942	4	STRG.9476.3	1
scaffold_2	spliced_intron	8299359	8300642	+	asmbl_24660,asmbl_24662,asmbl_24663	none	STRG.2116.1,STRG.2116.2,STRG.2116.4,blat.proc3829871.chain_2248,blat.proc3829871.chain_2249	5	STRG.2116.3,blat.proc3829871.chain_2250	2
scaffold_16	alt_acceptor	8291533	8291534	+	asmbl_17183	none	STRG.19447.1,blat.proc3829881.chain_317	2	STRG.19447.2,blat.proc3829881.chain_316	2
scaffold_13	spliced_intron	7911717	7911794	+	asmbl_11065	none	STRG.16053.1,blat.proc3829879.chain_793	2	blat.proc3829879.chain_792	1
scaffold_1	spliced_intron	5748213	5748415	+	asmbl_1775	none	STRG.373.2,Trinity_GG_248_c0_g1_i1,blat.proc3829871.chain_436	3	STRG.373.1,STRG.373.3,blat.proc3829871.chain_435,blat.proc3829871.chain_437	4
scaffold_12	starts_in_intron	4618089	4618089	-	asmbl_7556	none	STRG.14627.2,blat.proc3829893.chain_3029	2	STRG.14627.1,blat.proc3829893.chain_3030,blat.proc3829893.chain_3031	3
scaffold_6	retained_exon	3808346	3808417	+	asmbl_46805,asmbl_46806	none	STRG.7379.2,STRG.7379.4	2	STRG.7379.5,Trinity_GG_4055_c0_g1_i6,blat.proc3829873.chain_3528	3
scaffold_14	spliced_intron	1094470	1094586	+	asmbl_11775	none	STRG.16756.2,blat.proc3829879.chain_1481	2	STRG.16756.3,blat.proc3829879.chain_1478	2
scaffold_27	alternate_exon	384415	384823	-	asmbl_36635	none	STRG.28547.2,blat.proc3829901.chain_1686	2	STRG.28547.1,STRG.28547.5,Trinity_GG_32953_c1_g1_i2,blat.proc3829901.chain_1683,blat.proc3829901.chain_1684,blat.proc3829901.chain_1687	6
scaffold_6	ends_in_intron	5268470	5268470	+	asmbl_46877	none	STRG.7492.1,blat.proc3829873.chain_3610	2	STRG.7492.3,blat.proc3829873.chain_3609	2
scaffold_20	alt_acceptor	9543126	9543127	+	asmbl_26020	none	STRG.23477.1,Trinity_GG_12965_c0_g1_i1,blat.proc3829883.chain_561	3	STRG.23477.2	1
scaffold_14	alt_donor	6283675	6283676	+	asmbl_12035,asmbl_12039	none	STRG.17063.1,STRG.17063.7,blat.proc3829879.chain_1739,blat.proc3829879.chain_1744,blat.proc3829879.chain_1746	5	STRG.17063.2,blat.proc3829879.chain_1740,blat.proc3829879.chain_1742	3
scaffold_3	starts_in_intron	3268965	3268965	-	asmbl_38716	none	STRG.3088.3,blat.proc3829887.chain_2792	2	STRG.3088.1,STRG.3088.2,blat.proc3829887.chain_2794,blat.proc3829887.chain_2796	4
scaffold_22	retained_exon	4231807	4232079	-	asmbl_29977,asmbl_29990	none	STRG.24838.1,blat.proc3829899.chain_1977	2	STRG.24838.2,STRG.24838.3,STRG.24838.4,blat.proc3829899.chain_1976	4
scaffold_14	alt_acceptor	6771278	6771279	-	asmbl_13143,asmbl_13145	none	STRG.17107.2,blat.proc3829895.chain_1746	2	STRG.17107.1,blat.proc3829895.chain_1744,blat.proc3829895.chain_1745	3
scaffold_28	spliced_intron	2810466	2811309	-	asmbl_37410	none	blat.proc3829901.chain_2493	1	blat.proc3829901.chain_2492,blat.proc3829901.chain_2495,blat.proc3829901.chain_2496	3
scaffold_10	spliced_intron	1425275	1425575	+	asmbl_4214,asmbl_4215,asmbl_4216,asmbl_4217,asmbl_4220,asmbl_4221,asmbl_4222	none	STRG.12005.1,STRG.12005.2,STRG.12005.3,STRG.12005.4,Trinity_GG_6688_c0_g1_i3,Trinity_GG_6688_c0_g1_i4,Trinity_GG_6688_c0_g1_i6,blat.proc3829877.chain_727,blat.proc3829877.chain_728,blat.proc3829877.chain_729,blat.proc3829877.chain_730,blat.proc3829877.chain_733	12	STRG.12005.5,Trinity_GG_6688_c0_g1_i8,blat.proc3829877.chain_731,blat.proc3829877.chain_732	4
scaffold_11	retained_intron	4666941	4667075	+	asmbl_5457,asmbl_5458	none	STRG.13546.2,STRG.13546.4,Trinity_GG_7415_c0_g1_i2,blat.proc3829877.chain_1980	4	blat.proc3829877.chain_1979,blat.proc3829877.chain_1981,blat.proc3829877.chain_1982	3
scaffold_20	alternate_exon	10007337	10012144	+	asmbl_26073	none	STRG.23533.1,Trinity_GG_13006_c0_g1_i1,blat.proc3829883.chain_631	3	STRG.23533.2	1
scaffold_22	retained_intron	11543991	11544062	+	asmbl_29696,asmbl_29698	none	STRG.25485.2,blat.proc3829883.chain_2362	2	STRG.25485.3	1
scaffold_27	ends_in_intron	6602806	6602806	-	asmbl_37022	none	Trinity_GG_33272_c0_g1_i3	1	STRG.29010.1,blat.proc3829901.chain_2175	2
scaffold_5	alt_acceptor	15766284	15766285	+	asmbl_44679	none	Trinity_GG_3692_c0_g1_i6,blat.proc3829873.chain_2879	2	blat.proc3829873.chain_2875	1
scaffold_12	starts_in_intron	4305954	4305954	+	asmbl_8557	none	blat.proc3829877.chain_3074	1	STRG.14595.1,blat.proc3829877.chain_3073	2
scaffold_2	starts_in_intron	8301708	8301708	+	asmbl_24665	none	STRG.2116.5	1	STRG.2116.1,STRG.2116.3,STRG.2116.4,blat.proc3829871.chain_2249	4
scaffold_12	retained_intron	7275750	7275862	-	asmbl_7694	none	Trinity_GG_25259_c0_g1_i2,blat.proc3829893.chain_3175	2	STRG.14787.1,STRG.14787.2,STRG.14787.3,Trinity_GG_25259_c0_g1_i1,Trinity_GG_25259_c0_g1_i3,Trinity_GG_25259_c0_g2_i1,blat.proc3829893.chain_3176,blat.proc3829893.chain_3177,blat.proc3829893.chain_3178	9
scaffold_7	alt_donor	5916584	5916585	-	asmbl_49711	none	STRG.8887.5,Trinity_GG_22041_c0_g1_i6,blat.proc3829891.chain_1163,blat.proc3829891.chain_1166	4	STRG.8887.2,blat.proc3829891.chain_1167,blat.proc3829891.chain_1168	3
scaffold_9	starts_in_intron	12635293	12635293	+	asmbl_54430,asmbl_54436	none	blat.proc3829877.chain_356,blat.proc3829877.chain_358	2	STRG.11574.1,STRG.11574.3,Trinity_GG_6469_c0_g1_i6,blat.proc3829877.chain_355	4
scaffold_15	alt_donor	9879879	9879880	+	asmbl_14376	none	STRG.18494.1,blat.proc3829879.chain_3119	2	STRG.18494.2	1
scaffold_10	spliced_intron	2675286	2675371	+	asmbl_4272	none	STRG.12077.2	1	STRG.12077.1,STRG.12077.3,blat.proc3829877.chain_790	3
scaffold_6	spliced_intron	8636212	8636466	-	asmbl_48510	none	STRG.7735.1,Trinity_GG_21380_c0_g1_i4,blat.proc3829889.chain_3748	3	STRG.7735.2,Trinity_GG_21380_c0_g1_i3,blat.proc3829889.chain_3747	3
scaffold_16	alt_acceptor	6232211	6232212	-	asmbl_16331	none	STRG.19353.1	1	STRG.19353.2	1
scaffold_17	alternate_exon	1290516	1290765	-	asmbl_18730,asmbl_18731	none	STRG.19952.2,STRG.19952.6	2	STRG.19952.1,STRG.19952.3,STRG.19952.4,STRG.19952.5,blat.proc3829897.chain_836,blat.proc3829897.chain_838,blat.proc3829897.chain_840,blat.proc3829897.chain_841,blat.proc3829897.chain_843	9
scaffold_17	alt_acceptor	2566632	2566633	+	asmbl_17792,asmbl_17795	none	STRG.20039.1,STRG.20039.2,blat.proc3829881.chain_840	3	blat.proc3829881.chain_839	1
scaffold_11	alt_acceptor	14588382	14588383	+	asmbl_6074	none	STRG.14246.1,blat.proc3829877.chain_2756	2	STRG.14246.2,blat.proc3829877.chain_2754	2
scaffold_15	alternate_exon	15345897	15346145	+	asmbl_14702	none	STRG.18908.3	1	STRG.18908.1	1
scaffold_1	alt_donor	14320893	14320894	+	asmbl_2357	none	STRG.1024.3,blat.proc3829871.chain_1126	2	STRG.1024.4,blat.proc3829871.chain_1130	2
scaffold_17	ends_in_intron	9567722	9567722	+	asmbl_18239	none	STRG.20564.2,Trinity_GG_11277_c0_g1_i4,blat.proc3829881.chain_1402	3	STRG.20564.1,Trinity_GG_11277_c0_g1_i1,Trinity_GG_11277_c0_g1_i2,Trinity_GG_11277_c0_g1_i3,blat.proc3829881.chain_1399,blat.proc3829881.chain_1400,blat.proc3829881.chain_1401	7
scaffold_6	starts_in_intron	18691033	18691033	+	asmbl_47784	none	Trinity_GG_4699_c0_g1_i3,blat.proc3829875.chain_960	2	STRG.8528.1,STRG.8528.2,Trinity_GG_4699_c0_g1_i2,blat.proc3829875.chain_959	4
scaffold_28	skipped_exon	8412619	8414931	+	asmbl_38441	none	STRG.29890.2	1	STRG.29890.1,Trinity_GG_16556_c0_g1_i2,blat.proc3829885.chain_2986	3
scaffold_52	retained_intron	1701	1786	-	asmbl_46484	none	Trinity_GG_33859_c0_g1_i2,blat.proc3829901.chain_3146	2	STRG.30037.1,STRG.30037.2,blat.proc3829901.chain_3148,blat.proc3829901.chain_3149	4
scaffold_7	retained_intron	7927994	7928676	-	asmbl_49794	none	blat.proc3829891.chain_1306	1	STRG.9028.1,blat.proc3829891.chain_1304,blat.proc3829891.chain_1305	3
scaffold_14	retained_intron	8694420	8694707	-	asmbl_13321,asmbl_13322	none	STRG.17289.2,blat.proc3829895.chain_2019	2	STRG.17289.1,blat.proc3829895.chain_2016,blat.proc3829895.chain_2017,blat.proc3829895.chain_2018	4
scaffold_4	alt_acceptor	1972617	1972618	-	asmbl_41126	none	blat.proc3829889.chain_316	1	blat.proc3829889.chain_315	1
scaffold_17	ends_in_intron	8222190	8222190	+	asmbl_18082,asmbl_18083,asmbl_18086,asmbl_18087	none	STRG.20435.2,STRG.20435.4,blat.proc3829881.chain_1199,blat.proc3829881.chain_1200	4	STRG.20435.1,STRG.20435.3,blat.proc3829881.chain_1196,blat.proc3829881.chain_1198,blat.proc3829881.chain_1203	5
scaffold_24	retained_intron	3655845	3656072	+	asmbl_32162	none	STRG.26528.5,Trinity_GG_14654_c0_g1_i1,blat.proc3829883.chain_3409	3	STRG.26528.1,blat.proc3829883.chain_3404,blat.proc3829883.chain_3408	3
scaffold_26	spliced_intron	9772322	9772904	+	asmbl_35779,asmbl_35782,asmbl_35784,asmbl_35788	none	STRG.28501.1,STRG.28501.6,blat.proc3829885.chain_1432,blat.proc3829885.chain_1437	4	STRG.28501.2,STRG.28501.3,STRG.28501.4,STRG.28501.9,Trinity_GG_15718_c0_g2_i1,blat.proc3829885.chain_1433,blat.proc3829885.chain_1436,blat.proc3829885.chain_1438	8
scaffold_13	retained_intron	6949076	6950695	-	asmbl_9775,asmbl_9776	none	STRG.15968.1,STRG.15968.6,Trinity_GG_25972_c0_g1_i5	3	STRG.15968.5	1
scaffold_18	alt_donor	4074029	4074030	+	asmbl_20520,asmbl_20521	none	STRG.21198.2,STRG.21198.3	2	STRG.21198.1,STRG.21198.4	2
scaffold_25	retained_intron	4871626	4872194	-	asmbl_34214	none	STRG.27404.2,blat.proc3829901.chain_646	2	STRG.27404.1,Trinity_GG_32325_c0_g1_i2,blat.proc3829901.chain_645	3
scaffold_1	retained_intron	3270179	3270373	-	asmbl_140,asmbl_144	none	STRG.199.2,blat.proc3829887.chain_98	2	STRG.199.3	1
scaffold_15	alternate_exon	1683324	1684105	+	asmbl_13966	none	STRG.17960.1,Trinity_GG_9888_c1_g1_i1,blat.proc3829879.chain_2647	3	STRG.17960.2	1
scaffold_5	skipped_exon	15627804	15629419	-	asmbl_46092	none	STRG.6749.1,blat.proc3829889.chain_2825	2	STRG.6749.2,blat.proc3829889.chain_2827	2
scaffold_7	alt_acceptor	8659757	8659758	-	asmbl_49835	none	STRG.9091.1	1	STRG.9091.2,blat.proc3829891.chain_1356,blat.proc3829891.chain_1358	3
scaffold_9	starts_in_intron	8936089	8936089	+	asmbl_54171	none	blat.proc3829877.chain_44	1	STRG.11267.2,blat.proc3829877.chain_42,blat.proc3829877.chain_43	3
scaffold_8	retained_intron	4194632	4194691	-	asmbl_52752	none	STRG.9887.1	1	blat.proc3829891.chain_2037	1
scaffold_7	spliced_intron	5265960	5265992	-	asmbl_49692	none	STRG.8856.2	1	STRG.8856.1,blat.proc3829891.chain_1206	2
scaffold_17	skipped_exon	2354078	2358464	+	asmbl_17770	none	STRG.20017.5	1	STRG.20017.1,blat.proc3829881.chain_852,blat.proc3829881.chain_853	3
scaffold_5	retained_exon	238215	238772	-	asmbl_45151	none	STRG.5594.1,Trinity_GG_20172_c0_g1_i1,blat.proc3829889.chain_1710	3	STRG.5594.4	1
scaffold_9	alt_acceptor	11812435	11812436	-	asmbl_55277	none	STRG.11486.2	1	STRG.11486.1,STRG.11486.3,blat.proc3829891.chain_3596,blat.proc3829891.chain_3597	4
scaffold_3	retained_intron	4282597	4282658	+	asmbl_39953	none	STRG.3120.1	1	STRG.3120.2	1
scaffold_7	starts_in_intron	16817417	16817417	-	asmbl_50230	none	blat.proc3829891.chain_1827	1	STRG.9585.1,STRG.9585.2,blat.proc3829891.chain_1826,blat.proc3829891.chain_1828,blat.proc3829891.chain_1829	5
scaffold_19	spliced_intron	13155009	13155525	-	asmbl_21822	none	STRG.22626.1,blat.proc3829897.chain_3409	2	STRG.22626.3	1
scaffold_19	starts_in_intron	9422761	9422761	+	asmbl_22388	none	Trinity_GG_12356_c0_g1_i1	1	STRG.22357.1,blat.proc3829881.chain_3280	2
scaffold_19	retained_exon	857705	858188	+	asmbl_22020	none	STRG.21868.2,blat.proc3829881.chain_2794	2	STRG.21868.1,Trinity_GG_12075_c1_g1_i1,blat.proc3829881.chain_2795	3
scaffold_20	alt_donor	7208974	7208975	+	asmbl_25862,asmbl_25864	none	STRG.23279.2,Trinity_GG_12855_c0_g1_i1,blat.proc3829883.chain_404	3	STRG.23279.1,blat.proc3829883.chain_405	2
scaffold_11	alt_acceptor	11644975	11644976	+	asmbl_5955	none	blat.proc3829877.chain_2597	1	STRG.14081.1,blat.proc3829877.chain_2598	2
scaffold_23	skipped_exon	6988677	6989115	-	asmbl_31718	none	STRG.26001.3	1	STRG.26001.1,STRG.26001.2,blat.proc3829899.chain_3072,blat.proc3829899.chain_3073,blat.proc3829899.chain_3074	5
scaffold_1	ends_in_intron	15881465	15881465	+	asmbl_2432	none	blat.proc3829871.chain_1213	1	STRG.1112.1,STRG.1112.2,Trinity_GG_675_c0_g1_i1,blat.proc3829871.chain_1212	4
scaffold_24	retained_exon	10133801	10133933	+	asmbl_32544	none	STRG.26962.2,blat.proc3829885.chain_42	2	STRG.26962.1	1
scaffold_2	retained_intron	15700571	15700762	+	asmbl_25094	none	Trinity_GG_1414_c0_g1_i4,blat.proc3829871.chain_2675	2	STRG.2526.1,STRG.2526.2,blat.proc3829871.chain_2673,blat.proc3829871.chain_2676	4
scaffold_7	retained_intron	9810110	9810191	-	asmbl_49883	none	STRG.9163.1	1	STRG.9163.2	1
scaffold_16	skipped_exon	6144352	6144917	+	asmbl_17070,asmbl_17072,asmbl_17073,asmbl_17074,asmbl_17075	none	STRG.19342.2,blat.proc3829881.chain_208,blat.proc3829881.chain_209,blat.proc3829881.chain_210,blat.proc3829881.chain_212,blat.proc3829881.chain_214	6	STRG.19342.1,STRG.19342.3,STRG.19342.4	3
scaffold_8	alt_donor	4634269	4634270	-	asmbl_52774	none	STRG.9916.1	1	STRG.9916.2	1
scaffold_9	spliced_intron	13279621	13279904	+	asmbl_54471,asmbl_54472,asmbl_54473	none	STRG.11615.1,STRG.11615.2,STRG.11615.3,blat.proc3829877.chain_402,blat.proc3829877.chain_403	5	STRG.11615.4,blat.proc3829877.chain_401	2
scaffold_1	starts_in_intron	14833339	14833339	+	asmbl_2391	none	blat.proc3829871.chain_1142	1	STRG.1064.1,blat.proc3829871.chain_1143	2
scaffold_4	alt_acceptor	16912491	16912492	+	asmbl_43346,asmbl_43347	none	STRG.5280.1,STRG.5280.2	2	STRG.5280.4,STRG.5280.5	2
scaffold_500	spliced_intron	1484	1625	+	asmbl_46451,asmbl_46452	none	blat.proc3829885.chain_3365,blat.proc3829885.chain_3368	2	blat.proc3829885.chain_3364,blat.proc3829885.chain_3367	2
scaffold_24	alt_acceptor	6833622	6833623	+	asmbl_32352	none	Trinity_GG_14799_c1_g1_i1,blat.proc3829883.chain_3657,blat.proc3829883.chain_3664	3	STRG.26717.2,blat.proc3829883.chain_3661,blat.proc3829883.chain_3662	3
scaffold_6	spliced_intron	12087982	12088116	-	asmbl_48729,asmbl_48730	none	STRG.7976.2,blat.proc3829891.chain_192	2	STRG.7976.1,Trinity_GG_21507_c0_g1_i1,blat.proc3829891.chain_193	3
scaffold_6	spliced_intron	2479060	2479128	-	asmbl_48078	none	STRG.7236.2	1	Trinity_GG_21054_c0_g2_i1,blat.proc3829889.chain_3222	2
scaffold_20	alt_donor	967146	967147	+	asmbl_25551	none	STRG.22792.3	1	STRG.22792.1	1
scaffold_1	alt_donor	6279691	6279692	-	asmbl_340,asmbl_341,asmbl_342,asmbl_343,asmbl_344,asmbl_345,asmbl_346	none	Trinity_GG_17251_c1_g1_i1,blat.proc3829887.chain_336	2	STRG.425.1,STRG.425.2,STRG.425.3,STRG.425.4,STRG.425.5	5
scaffold_6	starts_in_intron	4280271	4280271	-	asmbl_48246	none	blat.proc3829889.chain_3381	1	STRG.7397.1,Trinity_GG_21148_c0_g1_i3,blat.proc3829889.chain_3380	3
scaffold_14	retained_intron	11386909	11387002	-	asmbl_13463	none	blat.proc3829895.chain_2094	1	STRG.17457.1,STRG.17457.2,blat.proc3829895.chain_2096,blat.proc3829895.chain_2098	4
scaffold_28	spliced_intron	7421777	7421872	-	asmbl_37728	none	STRG.29795.1,blat.proc3829901.chain_2842	2	blat.proc3829901.chain_2841	1
scaffold_15	alt_acceptor	11492014	11492015	-	asmbl_15535	none	STRG.18603.2	1	STRG.18603.1,blat.proc3829895.chain_3387	2
scaffold_20	alt_donor	2402102	2402103	+	asmbl_25644	none	STRG.22962.1	1	STRG.22962.2,blat.proc3829883.chain_91,blat.proc3829883.chain_92,blat.proc3829883.chain_93	4
scaffold_15	starts_in_intron	4095873	4095873	+	asmbl_14065	none	blat.proc3829879.chain_2786	1	STRG.18140.1,STRG.18140.2,blat.proc3829879.chain_2785,blat.proc3829879.chain_2787	4
scaffold_6	alternate_exon	12114680	12116670	+	asmbl_47313	none	STRG.7978.1	1	STRG.7978.3,Trinity_GG_4362_c0_g1_i5,blat.proc3829875.chain_359	3
scaffold_9	spliced_intron	10918975	10919509	+	asmbl_54294	none	STRG.11397.1,blat.proc3829877.chain_186	2	STRG.11397.2,blat.proc3829877.chain_187	2
scaffold_5	starts_in_intron	6933630	6933630	+	asmbl_44127	none	Trinity_GG_3281_c0_g1_i3,blat.proc3829873.chain_2157	2	STRG.6099.1,blat.proc3829873.chain_2154,blat.proc3829873.chain_2155,blat.proc3829873.chain_2156	4
scaffold_27	alt_acceptor	1961756	1961757	+	asmbl_36011,asmbl_36013	none	STRG.28656.1,STRG.28656.3,blat.proc3829885.chain_1693,blat.proc3829885.chain_1696	4	STRG.28656.2,blat.proc3829885.chain_1692	2
scaffold_9	alt_acceptor	67098	67099	+	asmbl_53728,asmbl_53729	none	STRG.10758.1,STRG.10758.2	2	blat.proc3829875.chain_3247	1
scaffold_1	alternate_exon	7283824	7284224	-	asmbl_433	none	STRG.525.3,blat.proc3829887.chain_353	2	STRG.525.1,blat.proc3829887.chain_352	2
scaffold_13	spliced_intron	534534	534705	-	asmbl_9322,asmbl_9324,asmbl_9325,asmbl_9326	none	STRG.15432.1,STRG.15432.2,STRG.15432.3,Trinity_GG_25674_c0_g1_i1,Trinity_GG_25674_c0_g1_i4,blat.proc3829895.chain_187,blat.proc3829895.chain_189	7	Trinity_GG_25674_c0_g1_i2,blat.proc3829895.chain_188	2
scaffold_27	starts_in_intron	1961569	1961569	+	asmbl_36012	none	blat.proc3829885.chain_1695	1	STRG.28656.1,STRG.28656.2,STRG.28656.3,blat.proc3829885.chain_1692,blat.proc3829885.chain_1693,blat.proc3829885.chain_1696	6
scaffold_1	retained_intron	5731015	5731118	-	asmbl_297	none	blat.proc3829887.chain_257	1	STRG.379.1,STRG.379.2,blat.proc3829887.chain_259,blat.proc3829887.chain_260	4
scaffold_21	starts_in_intron	1053475	1053475	-	asmbl_27403	none	Trinity_GG_30261_c0_g1_i8,blat.proc3829899.chain_853	2	STRG.23776.1,STRG.23776.2,Trinity_GG_30261_c0_g1_i11,Trinity_GG_30261_c0_g1_i4,Trinity_GG_30261_c0_g1_i7,Trinity_GG_30261_c0_g1_i9,blat.proc3829899.chain_850,blat.proc3829899.chain_851,blat.proc3829899.chain_852,blat.proc3829899.chain_854	10
scaffold_13	alt_donor	911723	911724	-	asmbl_9340,asmbl_9342,asmbl_9345	none	STRG.15448.1,STRG.15448.5,STRG.15448.6,blat.proc3829895.chain_212,blat.proc3829895.chain_215	5	STRG.15448.3,STRG.15448.4,blat.proc3829895.chain_213,blat.proc3829895.chain_214	4
scaffold_22	alt_acceptor	4837652	4837653	+	asmbl_29336	none	STRG.24882.2	1	STRG.24882.1,Trinity_GG_13764_c0_g1_i1,blat.proc3829883.chain_1939	3
scaffold_6	skipped_exon	3056262	3057109	+	asmbl_46748	none	blat.proc3829873.chain_3441	1	STRG.7308.1,STRG.7308.2,blat.proc3829873.chain_3438,blat.proc3829873.chain_3440,blat.proc3829873.chain_3444,blat.proc3829873.chain_3445,blat.proc3829873.chain_3446	7
scaffold_4	alt_donor	19337808	19337809	-	asmbl_42179	none	blat.proc3829889.chain_1519	1	STRG.5513.1,STRG.5513.2	2
scaffold_14	starts_in_intron	4681345	4681345	-	asmbl_13041	none	STRG.16990.1,blat.proc3829895.chain_1656	2	STRG.16990.2,blat.proc3829895.chain_1655	2
scaffold_1	spliced_intron	12335190	12335281	-	asmbl_710,asmbl_711,asmbl_715,asmbl_716,asmbl_717,asmbl_718,asmbl_719,asmbl_720,asmbl_721,asmbl_722,asmbl_723	none	STRG.843.1,STRG.843.2,blat.proc3829887.chain_734,blat.proc3829887.chain_735,blat.proc3829887.chain_736,blat.proc3829887.chain_737,blat.proc3829887.chain_739,blat.proc3829887.chain_741,blat.proc3829887.chain_743,blat.proc3829887.chain_744,blat.proc3829887.chain_745,blat.proc3829887.chain_746	12	blat.proc3829887.chain_738,blat.proc3829887.chain_742	2
scaffold_18	ends_in_intron	1725038	1725038	+	asmbl_20402	none	blat.proc3829881.chain_1937	1	STRG.21047.1,blat.proc3829881.chain_1936	2
scaffold_8	alternate_exon	17973918	17974253	-	asmbl_53507	none	STRG.10695.3	1	STRG.10695.1,Trinity_GG_22958_c0_g1_i1,blat.proc3829891.chain_2852	3
scaffold_28	alt_acceptor	6515478	6515479	-	asmbl_37675	none	blat.proc3829901.chain_2784	1	STRG.29726.2	1
scaffold_5	starts_in_intron	8674712	8674712	+	asmbl_44225	none	blat.proc3829873.chain_2282	1	STRG.6198.1,STRG.6198.2,blat.proc3829873.chain_2281,blat.proc3829873.chain_2283	4
scaffold_3	retained_intron	8165751	8166312	-	asmbl_38968	none	Trinity_GG_18833_c11_g1_i1,blat.proc3829887.chain_3151	2	blat.proc3829887.chain_3128,blat.proc3829887.chain_3134,blat.proc3829887.chain_3136	3
scaffold_4	alt_acceptor	19539841	19539842	-	asmbl_42202	none	blat.proc3829889.chain_1601	1	STRG.5538.3	1
scaffold_1	retained_intron	5543912	5544420	-	asmbl_276	none	Trinity_GG_17203_c0_g1_i1,blat.proc3829887.chain_227	2	STRG.344.1,blat.proc3829887.chain_228	2
scaffold_1	retained_intron	11769504	11769614	+	asmbl_2130	none	blat.proc3829871.chain_892	1	STRG.795.1,STRG.795.2,STRG.795.3,blat.proc3829871.chain_893	4
scaffold_10	alt_acceptor	5007104	5007105	-	asmbl_3247	none	STRG.12316.2,Trinity_GG_23874_c0_g1_i4,blat.proc3829893.chain_754	3	STRG.12316.1,blat.proc3829893.chain_756	2
scaffold_19	alt_donor	12107554	12107555	-	asmbl_21674	none	STRG.22526.3	1	STRG.22526.2,blat.proc3829897.chain_3212	2
scaffold_12	alternate_exon	4609993	4610122	-	asmbl_7552,asmbl_7553,asmbl_7554	none	STRG.14626.4,blat.proc3829893.chain_2996,blat.proc3829893.chain_2999	3	STRG.14626.3,blat.proc3829893.chain_2997	2
scaffold_24	alt_acceptor	2786679	2786680	-	asmbl_32791	none	STRG.26467.2,Trinity_GG_31816_c0_g1_i3,blat.proc3829899.chain_3549	3	STRG.26467.1,blat.proc3829899.chain_3548	2
scaffold_3	spliced_intron	17457148	17457253	+	asmbl_40640,asmbl_40641,asmbl_40643,asmbl_40644,asmbl_40645	none	STRG.3976.1,STRG.3976.2,STRG.3976.3,STRG.3976.4,Trinity_GG_2205_c0_g1_i1,Trinity_GG_2205_c0_g1_i3,blat.proc3829873.chain_331,blat.proc3829873.chain_332,blat.proc3829873.chain_333	9	Trinity_GG_2205_c0_g1_i4,blat.proc3829873.chain_334	2
scaffold_1	retained_intron	14189912	14190481	-	asmbl_878	none	blat.proc3829887.chain_947	1	STRG.1005.1,blat.proc3829887.chain_944,blat.proc3829887.chain_945,blat.proc3829887.chain_948,blat.proc3829887.chain_949	5
scaffold_11	alt_donor	5007654	5007655	+	asmbl_5499	none	STRG.13579.1	1	STRG.13579.2,blat.proc3829877.chain_2001	2
scaffold_11	retained_intron	9018053	9018198	-	asmbl_6885	none	STRG.13926.2,blat.proc3829893.chain_2279	2	STRG.13926.1,blat.proc3829893.chain_2278	2
scaffold_2	starts_in_intron	2968182	2968182	+	asmbl_24286	none	Trinity_GG_979_c0_g1_i2,blat.proc3829871.chain_1786	2	STRG.1736.1,Trinity_GG_979_c0_g1_i1,blat.proc3829871.chain_1785,blat.proc3829871.chain_1787	4
scaffold_15	retained_intron	15207429	15207667	-	asmbl_15778	none	blat.proc3829895.chain_3682	1	STRG.18902.1,blat.proc3829895.chain_3681	2
scaffold_18	retained_intron	4570648	4570746	+	asmbl_20559,asmbl_20561	none	STRG.21237.1,blat.proc3829881.chain_2151,blat.proc3829881.chain_2152	3	blat.proc3829881.chain_2153	1
scaffold_1	alt_donor	3641920	3641921	+	asmbl_1617	none	STRG.227.1,blat.proc3829871.chain_264	2	STRG.227.2	1
scaffold_10	starts_in_intron	5010707	5010707	-	asmbl_3252	none	STRG.12317.2	1	blat.proc3829893.chain_747,blat.proc3829893.chain_749	2
scaffold_2	skipped_exon	18950712	18952345	+	asmbl_25287,asmbl_25290	none	STRG.2768.1,STRG.2768.3,Trinity_GG_1522_c0_g1_i2	3	Trinity_GG_1522_c0_g1_i11	1
scaffold_28	retained_intron	5391084	5391169	+	asmbl_38280,asmbl_38285	none	STRG.29664.4,Trinity_GG_16450_c0_g1_i3,blat.proc3829885.chain_2785,blat.proc3829885.chain_2786	4	STRG.29664.1,STRG.29664.2,Trinity_GG_16450_c0_g1_i2,blat.proc3829885.chain_2784	4
scaffold_16	retained_intron	14560038	14560115	-	asmbl_16647	none	STRG.19826.1,blat.proc3829897.chain_766	2	STRG.19826.2,blat.proc3829897.chain_767,blat.proc3829897.chain_779	3
scaffold_8	retained_intron	8554099	8555514	-	asmbl_52950,asmbl_52951,asmbl_52952	none	STRG.10106.1,Trinity_GG_22674_c2_g1_i7,blat.proc3829891.chain_2300,blat.proc3829891.chain_2301,blat.proc3829891.chain_2302,blat.proc3829891.chain_2304	6	blat.proc3829891.chain_2303	1
scaffold_14	retained_exon	7495626	7496652	+	asmbl_12145	none	STRG.17177.4,blat.proc3829879.chain_1834	2	STRG.17177.3	1
scaffold_10	retained_intron	7765135	7765301	-	asmbl_3467,asmbl_3468	none	Trinity_GG_24022_c0_g1_i4,blat.proc3829893.chain_1042	2	STRG.12555.1,STRG.12555.2,blat.proc3829893.chain_1044	3
scaffold_10	alternate_exon	1490983	1491397	-	asmbl_2979	none	Trinity_GG_23657_c0_g1_i7,blat.proc3829893.chain_391	2	STRG.12017.1,blat.proc3829893.chain_394	2
scaffold_17	ends_in_intron	10128965	10128965	+	asmbl_18307	none	Trinity_GG_11299_c0_g1_i2,blat.proc3829881.chain_1455	2	STRG.20618.1	1
scaffold_7	alternate_exon	12542827	12542862	-	asmbl_50061	none	STRG.9352.5	1	STRG.9352.1,STRG.9352.4,blat.proc3829891.chain_1570,blat.proc3829891.chain_1571	4
scaffold_18	ends_in_intron	9663521	9663521	-	asmbl_20109	none	blat.proc3829897.chain_2387	1	STRG.21565.1,Trinity_GG_29061_c0_g1_i2,blat.proc3829897.chain_2386	3
scaffold_2	retained_intron	14561522	14561619	+	asmbl_24981	none	Trinity_GG_1360_c0_g2_i1,blat.proc3829871.chain_2571	2	STRG.2454.1,STRG.2454.2,STRG.2454.3,STRG.2454.4,STRG.2454.5,blat.proc3829871.chain_2565,blat.proc3829871.chain_2570	7
scaffold_2	starts_in_intron	14535101	14535101	+	asmbl_24976	none	blat.proc3829871.chain_2646	1	STRG.2452.1,STRG.2452.2,blat.proc3829871.chain_2647,blat.proc3829871.chain_2648	4
scaffold_16	alt_donor	8143955	8143956	+	asmbl_17180	none	STRG.19444.1,blat.proc3829881.chain_247	2	STRG.19444.2	1
scaffold_17	starts_in_intron	11510208	11510208	+	asmbl_18354	none	STRG.20688.1	1	blat.proc3829881.chain_1505	1
scaffold_21	alternate_exon	5255282	5259849	-	asmbl_27653	none	STRG.24045.1,blat.proc3829899.chain_1115,blat.proc3829899.chain_1116	3	STRG.24045.2	1
scaffold_18	spliced_intron	2394215	2394398	-	asmbl_19762	none	STRG.21108.1,blat.proc3829897.chain_2018	2	STRG.21108.2,Trinity_GG_28850_c0_g1_i4,blat.proc3829897.chain_2019,blat.proc3829897.chain_2020	4
scaffold_26	alternate_exon	5562325	5565334	+	asmbl_35546	none	STRG.28248.1,Trinity_GG_15578_c0_g1_i1,blat.proc3829885.chain_1204	3	STRG.28248.2,blat.proc3829885.chain_1208	2
scaffold_9	spliced_intron	11835838	11835897	+	asmbl_54370	none	STRG.11488.2	1	STRG.11488.1,Trinity_GG_6421_c0_g1_i1,blat.proc3829877.chain_283	3
scaffold_3	retained_intron	1466208	1466551	-	asmbl_38666	none	STRG.2962.1,blat.proc3829887.chain_2765	2	STRG.2962.2,blat.proc3829887.chain_2766	2
scaffold_9	alternate_exon	5277420	5277695	+	asmbl_54003	none	blat.proc3829875.chain_3590	1	STRG.11095.3	1
scaffold_11	retained_intron	2061692	2061854	+	asmbl_5311	none	blat.proc3829877.chain_1846	1	STRG.13352.1,STRG.13352.2,STRG.13352.3,blat.proc3829877.chain_1843	4
scaffold_6	alt_donor	7938426	7938427	-	asmbl_48448,asmbl_48451,asmbl_48452	none	STRG.7666.2,STRG.7666.3,blat.proc3829889.chain_3704	3	STRG.7666.4	1
scaffold_9	alt_acceptor	4206164	4206165	+	asmbl_53923	none	STRG.11013.3	1	STRG.11013.4,blat.proc3829875.chain_3429	2
scaffold_3	starts_in_intron	11341820	11341820	-	asmbl_39106	none	STRG.3562.1	1	STRG.3562.2	1
scaffold_7	retained_intron	12387302	12387428	-	asmbl_50021	none	blat.proc3829891.chain_1537	1	STRG.9328.1,blat.proc3829891.chain_1531,blat.proc3829891.chain_1532,blat.proc3829891.chain_1533,blat.proc3829891.chain_1534,blat.proc3829891.chain_1535,blat.proc3829891.chain_1536,blat.proc3829891.chain_1538	8
scaffold_10	alt_acceptor	1710329	1710330	-	asmbl_2992,asmbl_2993	none	STRG.12021.1,Trinity_GG_23646_c0_g1_i1	2	STRG.12021.2	1
scaffold_9	skipped_exon	8395093	8395925	+	asmbl_54158	none	STRG.11249.5,blat.proc3829877.chain_20	2	STRG.11249.1,STRG.11249.3,STRG.11249.4,blat.proc3829877.chain_17,blat.proc3829877.chain_18	5
scaffold_28	retained_exon	57850	57968	-	asmbl_37205,asmbl_37208	none	STRG.29222.1,Trinity_GG_33360_c0_g1_i2,blat.proc3829901.chain_2318,blat.proc3829901.chain_2319	4	blat.proc3829901.chain_2317	1
scaffold_23	starts_in_intron	272986	272986	-	asmbl_31294	none	blat.proc3829899.chain_2615	1	STRG.25529.1,blat.proc3829899.chain_2617,blat.proc3829899.chain_2618	3
scaffold_15	alt_acceptor	4984101	4984102	-	asmbl_15188,asmbl_15189	none	STRG.18197.3,STRG.18197.4	2	STRG.18197.1,STRG.18197.5,blat.proc3829895.chain_2985,blat.proc3829895.chain_2986,blat.proc3829895.chain_2987,blat.proc3829895.chain_2988	6
scaffold_12	retained_intron	9071332	9071490	+	asmbl_8817	none	Trinity_GG_8217_c0_g1_i4,blat.proc3829877.chain_3370	2	STRG.14900.1,Trinity_GG_8217_c0_g1_i1,blat.proc3829877.chain_3369	3
scaffold_8	starts_in_intron	9816590	9816590	+	asmbl_52096	none	blat.proc3829875.chain_2662	1	STRG.10222.1,blat.proc3829875.chain_2661,blat.proc3829875.chain_2663	3
scaffold_11	alternate_exon	12411413	12417543	-	asmbl_7068	none	STRG.14149.1	1	STRG.14149.2,STRG.14149.3,blat.proc3829893.chain_2537	3
scaffold_18	alt_donor	12403944	12403945	-	asmbl_20172	none	STRG.21698.2,blat.proc3829897.chain_2491	2	STRG.21698.1,blat.proc3829897.chain_2490	2
scaffold_11	starts_in_intron	8103473	8103473	+	asmbl_5699	none	blat.proc3829877.chain_2298	1	STRG.13811.1,STRG.13811.2,STRG.13811.3,STRG.13811.4,Trinity_GG_7614_c1_g1_i5,blat.proc3829877.chain_2300,blat.proc3829877.chain_2301,blat.proc3829877.chain_2302,blat.proc3829877.chain_2303	9
scaffold_10	retained_intron	9555581	9557098	+	asmbl_4682	none	STRG.12692.5	1	STRG.12692.1	1
scaffold_2	retained_intron	7892477	7892601	+	asmbl_24631	none	Trinity_GG_1187_c0_g1_i13,blat.proc3829871.chain_2192	2	STRG.2086.1,STRG.2086.2,STRG.2086.3,blat.proc3829871.chain_2189,blat.proc3829871.chain_2193,blat.proc3829871.chain_2195,blat.proc3829871.chain_2196,blat.proc3829871.chain_2199	8
scaffold_18	alternate_exon	8883251	8883319	-	asmbl_20074	none	STRG.21540.2	1	STRG.21540.1,blat.proc3829897.chain_2287,blat.proc3829897.chain_2288	3
scaffold_15	retained_intron	1504460	1504632	-	asmbl_14966	none	Trinity_GG_27097_c0_g1_i2,Trinity_GG_27097_c0_g1_i5,blat.proc3829895.chain_2659,blat.proc3829895.chain_2660	4	blat.proc3829895.chain_2661	1
scaffold_3	retained_intron	13702911	13703499	+	asmbl_40408,asmbl_40412	none	STRG.3712.3,blat.proc3829873.chain_132,blat.proc3829873.chain_134	3	STRG.3712.1,STRG.3712.2,STRG.3712.4,Trinity_GG_2088_c0_g1_i7,blat.proc3829873.chain_129,blat.proc3829873.chain_130,blat.proc3829873.chain_133	7
scaffold_15	starts_in_intron	4985016	4985016	-	asmbl_15188,asmbl_15189,asmbl_15192	none	STRG.18197.3,STRG.18197.4,STRG.18197.5	3	STRG.18197.1,blat.proc3829895.chain_2985,blat.proc3829895.chain_2986,blat.proc3829895.chain_2987,blat.proc3829895.chain_2988	5
scaffold_18	alt_acceptor	3781089	3781090	-	asmbl_19807	none	STRG.21181.1,blat.proc3829897.chain_2071	2	STRG.21181.2	1
scaffold_20	retained_intron	10787209	10787345	+	asmbl_26145,asmbl_26146,asmbl_26147	none	STRG.23592.1,STRG.23592.2,Trinity_GG_13065_c0_g1_i2,blat.proc3829883.chain_740,blat.proc3829883.chain_743	5	blat.proc3829883.chain_742	1
scaffold_23	alternate_exon	2615904	2616100	-	asmbl_31475	none	STRG.25709.6	1	STRG.25709.3,STRG.25709.5,blat.proc3829899.chain_2846	3
scaffold_3	retained_exon	10629028	10629296	+	asmbl_40236,asmbl_40238,asmbl_40241	none	STRG.3509.2,STRG.3509.3,blat.proc3829871.chain_3604,blat.proc3829871.chain_3605	4	STRG.3509.1,blat.proc3829871.chain_3607,blat.proc3829871.chain_3608	3
scaffold_18	alt_acceptor	206525	206526	+	asmbl_20300,asmbl_20302,asmbl_20303,asmbl_20304,asmbl_20305	none	STRG.20965.1,Trinity_GG_11543_c0_g1_i4,blat.proc3829881.chain_1839,blat.proc3829881.chain_1840,blat.proc3829881.chain_1841,blat.proc3829881.chain_1842,blat.proc3829881.chain_1843	7	STRG.20965.2,Trinity_GG_11543_c0_g1_i6,blat.proc3829881.chain_1837	3
scaffold_20	spliced_intron	8167955	8168079	+	asmbl_25905	none	STRG.23350.3	1	blat.proc3829883.chain_426	1
scaffold_2	alternate_exon	15296160	15296192	+	asmbl_25053	none	STRG.2478.2	1	STRG.2478.1,blat.proc3829871.chain_2505	2
scaffold_4	alternate_exon	12438593	12439319	+	asmbl_43054	none	STRG.4882.2,blat.proc3829873.chain_1221	2	STRG.4882.1,blat.proc3829873.chain_1222	2
scaffold_13	spliced_intron	7002522	7002602	-	asmbl_9787	none	STRG.15972.2,blat.proc3829895.chain_666	2	STRG.15972.1	1
scaffold_14	spliced_intron	12755086	12755745	-	asmbl_13583,asmbl_13588,asmbl_13589	none	STRG.17572.1,Trinity_GG_26911_c1_g1_i9,blat.proc3829895.chain_2359,blat.proc3829895.chain_2360,blat.proc3829895.chain_2363	5	STRG.17572.2,STRG.17572.3,Trinity_GG_26911_c1_g1_i3,blat.proc3829895.chain_2356,blat.proc3829895.chain_2361	5
scaffold_26	skipped_exon	5890248	5891473	+	asmbl_35580	none	blat.proc3829885.chain_1314	1	STRG.28280.1,blat.proc3829885.chain_1312	2
scaffold_18	spliced_intron	4614322	4614432	+	asmbl_20566,asmbl_20567	none	STRG.21243.2,STRG.21243.3,blat.proc3829881.chain_2082,blat.proc3829881.chain_2083	4	blat.proc3829881.chain_2081	1
scaffold_11	retained_intron	14533655	14533915	+	asmbl_6068,asmbl_6070	none	STRG.14239.4,Trinity_GG_7860_c0_g1_i7,blat.proc3829877.chain_2744	3	STRG.14239.1,STRG.14239.2,STRG.14239.3,Trinity_GG_7860_c0_g1_i2,Trinity_GG_7860_c0_g1_i6,blat.proc3829877.chain_2743,blat.proc3829877.chain_2745,blat.proc3829877.chain_2746,blat.proc3829877.chain_2747,blat.proc3829877.chain_2748	10
scaffold_13	skipped_exon	15100579	15102303	+	asmbl_11468	none	STRG.16547.1,blat.proc3829879.chain_1308	2	blat.proc3829879.chain_1307	1
scaffold_19	alt_acceptor	8213525	8213526	-	asmbl_21490	none	blat.proc3829897.chain_2997	1	STRG.22258.1,STRG.22258.2,blat.proc3829897.chain_2996,blat.proc3829897.chain_2998	4
scaffold_22	retained_intron	9537969	9539952	-	asmbl_30310	none	STRG.25272.1,Trinity_GG_31161_c2_g1_i1,Trinity_GG_31161_c3_g1_i1,Trinity_GG_31161_c4_g1_i1,Trinity_GG_31161_c5_g1_i1,blat.proc3829899.chain_2389	6	blat.proc3829899.chain_2385,blat.proc3829899.chain_2386	2
scaffold_14	starts_in_intron	8308164	8308164	+	asmbl_12199	none	Trinity_GG_9458_c0_g1_i1,blat.proc3829879.chain_1919	2	STRG.17241.1,STRG.17241.2,blat.proc3829879.chain_1921	3
scaffold_20	alt_donor	631160	631161	-	asmbl_26438	none	blat.proc3829897.chain_3525	1	STRG.22751.2,blat.proc3829897.chain_3524	2
scaffold_2	spliced_intron	6640625	6640693	-	asmbl_23239,asmbl_23240,asmbl_23241,asmbl_23243,asmbl_23244	none	STRG.2025.1,STRG.2025.2,STRG.2025.3,blat.proc3829887.chain_1945,blat.proc3829887.chain_1946,blat.proc3829887.chain_1948	6	blat.proc3829887.chain_1947	1
scaffold_6	ends_in_intron	8849445	8849445	-	asmbl_48525	none	blat.proc3829889.chain_3732	1	STRG.7753.1,STRG.7753.2,blat.proc3829889.chain_3729,blat.proc3829889.chain_3731	4
scaffold_2	skipped_exon	18709372	18710245	+	asmbl_25269	none	STRG.2748.2,blat.proc3829871.chain_2923	2	STRG.2748.1,Trinity_GG_1549_c1_g1_i2,blat.proc3829871.chain_2924,blat.proc3829871.chain_2925	4
scaffold_14	alt_acceptor	8707819	8707820	+	asmbl_12247	none	STRG.17290.1	1	STRG.17290.2,blat.proc3829879.chain_2032	2
scaffold_16	skipped_exon	6203129	6204131	-	asmbl_16324	none	STRG.19375.1	1	STRG.19375.2	1
scaffold_19	skipped_exon	3682622	3683432	+	asmbl_22134,asmbl_22136	none	STRG.22046.2,STRG.22046.6	2	STRG.22046.1,STRG.22046.3,STRG.22046.4	3
scaffold_9	retained_intron	15495374	15495474	-	asmbl_55498	none	Trinity_GG_23499_c0_g1_i9,blat.proc3829893.chain_115	2	STRG.11737.1,STRG.11737.2,blat.proc3829893.chain_120,blat.proc3829893.chain_121	4
scaffold_7	alt_acceptor	5916677	5916678	-	asmbl_49712,asmbl_49715	none	STRG.8887.1,STRG.8887.4,blat.proc3829891.chain_1165	3	STRG.8887.3,blat.proc3829891.chain_1163,blat.proc3829891.chain_1164	3
scaffold_7	skipped_exon	5234496	5236725	+	asmbl_50684	none	blat.proc3829875.chain_1294	1	STRG.8853.1,blat.proc3829875.chain_1296	2
scaffold_3	alt_acceptor	14393553	14393554	+	asmbl_40479	none	STRG.3777.2	1	STRG.3777.1,Trinity_GG_2118_c0_g1_i1,blat.proc3829873.chain_176	3
scaffold_13	skipped_exon	10433500	10435476	+	asmbl_11222,asmbl_11223,asmbl_11225	none	STRG.16236.1,STRG.16236.3,STRG.16236.4,blat.proc3829879.chain_969,blat.proc3829879.chain_971	5	STRG.16236.2,blat.proc3829879.chain_970	2
scaffold_26	starts_in_intron	5983324	5983324	+	asmbl_35592	none	STRG.28298.2	1	blat.proc3829885.chain_1323,blat.proc3829885.chain_1324	2
scaffold_6	starts_in_intron	885770	885770	-	asmbl_48034	none	blat.proc3829889.chain_3164	1	STRG.7153.1	1
scaffold_4	alternate_exon	4414581	4414706	+	asmbl_42574,asmbl_42576,asmbl_42583,asmbl_42585,asmbl_42586	none	Trinity_GG_2404_c0_g1_i19,Trinity_GG_2404_c0_g1_i5,blat.proc3829873.chain_681,blat.proc3829873.chain_687,blat.proc3829873.chain_688,blat.proc3829873.chain_689,blat.proc3829873.chain_696	7	STRG.4344.1,STRG.4344.2,STRG.4344.4,blat.proc3829873.chain_682,blat.proc3829873.chain_683,blat.proc3829873.chain_685,blat.proc3829873.chain_691,blat.proc3829873.chain_697	8
scaffold_21	skipped_exon	8129161	8131427	-	asmbl_27910,asmbl_27912,asmbl_27914	none	STRG.24334.5,blat.proc3829899.chain_1383,blat.proc3829899.chain_1385,blat.proc3829899.chain_1387	4	blat.proc3829899.chain_1382	1
scaffold_5	alt_acceptor	3630366	3630367	+	asmbl_43895	none	STRG.5828.1	1	STRG.5828.2	1
scaffold_25	alt_donor	3084649	3084650	-	asmbl_34074	none	STRG.27230.3	1	STRG.27230.1,STRG.27230.2,blat.proc3829901.chain_488,blat.proc3829901.chain_489,blat.proc3829901.chain_490	5
scaffold_26	spliced_intron	4155586	4155680	+	asmbl_35405	none	STRG.28105.1,blat.proc3829885.chain_1107	2	STRG.28105.2	1
scaffold_20	spliced_intron	12075926	12076083	-	asmbl_27140,asmbl_27142,asmbl_27144	none	STRG.23691.1,blat.proc3829899.chain_688,blat.proc3829899.chain_690,blat.proc3829899.chain_692	4	Trinity_GG_30196_c0_g1_i7,blat.proc3829899.chain_689	2
scaffold_11	alternate_exon	6711055	6713217	-	asmbl_6717	none	blat.proc3829893.chain_2180	1	STRG.13703.6,Trinity_GG_24701_c0_g1_i5,blat.proc3829893.chain_2181	3
scaffold_21	ends_in_intron	705871	705871	-	asmbl_27378	none	STRG.23751.2,Trinity_GG_30242_c0_g2_i1,blat.proc3829899.chain_818	3	Trinity_GG_30242_c0_g1_i4,blat.proc3829899.chain_812	2
scaffold_17	alt_acceptor	2709579	2709580	+	asmbl_17817	none	STRG.20057.1	1	STRG.20057.2,blat.proc3829881.chain_818,blat.proc3829881.chain_819	3
scaffold_2	ends_in_intron	19299273	19299273	-	asmbl_23879	none	Trinity_GG_18530_c0_g1_i7,blat.proc3829887.chain_2573	2	STRG.2796.1,STRG.2796.2,blat.proc3829887.chain_2570,blat.proc3829887.chain_2572,blat.proc3829887.chain_2575	5
scaffold_21	retained_intron	7009179	7009301	-	asmbl_27801	none	blat.proc3829899.chain_1274	1	STRG.24222.1,STRG.24222.2,blat.proc3829899.chain_1273,blat.proc3829899.chain_1275	4
scaffold_10	starts_in_intron	12949276	12949276	+	asmbl_4835	none	Trinity_GG_7107_c0_g1_i2,blat.proc3829877.chain_1462	2	STRG.12876.1,Trinity_GG_7107_c0_g1_i1,blat.proc3829877.chain_1463	3
scaffold_3	alt_donor	7216183	7216184	-	asmbl_38906	none	STRG.3322.2,blat.proc3829887.chain_3083,blat.proc3829887.chain_3085	3	STRG.3322.1,blat.proc3829887.chain_3084	2
scaffold_13	retained_intron	4803	5031	+	asmbl_10416,asmbl_10418,asmbl_10420,asmbl_10421,asmbl_10422,asmbl_10423	none	STRG.15408.1,STRG.15408.3,Trinity_GG_8474_c0_g1_i1,Trinity_GG_8474_c0_g1_i2,Trinity_GG_8474_c0_g1_i6,Trinity_GG_8474_c0_g1_i7,Trinity_GG_8474_c0_g1_i8,blat.proc3829879.chain_71,blat.proc3829879.chain_72,blat.proc3829879.chain_75,blat.proc3829879.chain_76,blat.proc3829879.chain_78	12	Trinity_GG_8474_c0_g1_i5,blat.proc3829879.chain_77	2
scaffold_7	alt_acceptor	301383	301384	+	asmbl_50434	none	STRG.8592.2	1	STRG.8592.1,blat.proc3829875.chain_1000	2
scaffold_6	alt_acceptor	594246	594247	-	asmbl_47989	none	STRG.7113.1,blat.proc3829889.chain_3097	2	STRG.7113.2	1
scaffold_13	retained_intron	3529047	3529149	+	asmbl_10686	none	blat.proc3829879.chain_363	1	STRG.15655.1,STRG.15655.2,blat.proc3829879.chain_361,blat.proc3829879.chain_362,blat.proc3829879.chain_364	5
scaffold_1	ends_in_intron	5719957	5719957	+	asmbl_1754	none	blat.proc3829871.chain_425	1	STRG.367.1	1
scaffold_14	ends_in_intron	408985	408985	-	asmbl_12812	none	STRG.16724.1	1	Trinity_GG_26372_c0_g1_i2,blat.proc3829895.chain_1426	2
scaffold_1	alt_acceptor	7290683	7290684	+	asmbl_1892	none	STRG.526.3	1	STRG.526.2,Trinity_GG_300_c0_g1_i4,blat.proc3829871.chain_530	3
scaffold_18	starts_in_intron	7682139	7682139	+	asmbl_20803	none	Trinity_GG_11863_c0_g3_i1,blat.proc3829881.chain_2442	2	STRG.21464.1,blat.proc3829881.chain_2435,blat.proc3829881.chain_2436,blat.proc3829881.chain_2437,blat.proc3829881.chain_2440	5
scaffold_12	alternate_exon	14256109	14256193	+	asmbl_9042	none	STRG.15246.1	1	STRG.15246.3,Trinity_GG_8401_c0_g1_i1,blat.proc3829877.chain_3698	3
scaffold_1	alt_acceptor	14075899	14075900	+	asmbl_2314	none	Trinity_GG_614_c0_g1_i4,blat.proc3829871.chain_1102	2	STRG.999.1,Trinity_GG_614_c0_g1_i3,blat.proc3829871.chain_1100	3
scaffold_10	ends_in_intron	11502006	11502006	+	asmbl_4742	none	blat.proc3829877.chain_1303	1	STRG.12794.1,blat.proc3829877.chain_1299,blat.proc3829877.chain_1301	3
scaffold_4	starts_in_intron	19045643	19045643	-	asmbl_42160	none	Trinity_GG_20101_c0_g1_i1,blat.proc3829889.chain_1574	2	STRG.5485.1,Trinity_GG_20101_c0_g1_i2,blat.proc3829889.chain_1575	3
scaffold_6	retained_intron	12552240	12553416	-	asmbl_48759,asmbl_48762	none	STRG.8010.2,blat.proc3829891.chain_322	2	STRG.8010.1	1
scaffold_18	skipped_exon	204474	205653	+	asmbl_20300,asmbl_20303	none	STRG.20965.1,blat.proc3829881.chain_1839,blat.proc3829881.chain_1841	3	STRG.20965.2,Trinity_GG_11543_c0_g1_i6,blat.proc3829881.chain_1837,blat.proc3829881.chain_1842,blat.proc3829881.chain_1843	5
scaffold_11	retained_exon	3091977	3092261	+	asmbl_5359	none	STRG.13419.2,blat.proc3829877.chain_1889	2	STRG.13419.1	1
scaffold_7	retained_intron	5927823	5928006	+	asmbl_50715	none	blat.proc3829875.chain_1202	1	blat.proc3829875.chain_1205	1
scaffold_16	retained_intron	290653	291015	+	asmbl_16809	none	STRG.19012.3	1	STRG.19012.1,STRG.19012.2,Trinity_GG_10430_c0_g1_i2,blat.proc3829879.chain_3638,blat.proc3829879.chain_3639,blat.proc3829879.chain_3641	6
scaffold_21	ends_in_intron	7290859	7290859	-	asmbl_27818	none	blat.proc3829899.chain_1308	1	STRG.24237.1,STRG.24237.2,STRG.24237.3,blat.proc3829899.chain_1307,blat.proc3829899.chain_1309	5
scaffold_15	alt_donor	2798144	2798145	+	asmbl_14020	none	STRG.18051.1,blat.proc3829879.chain_2696	2	STRG.18051.2,blat.proc3829879.chain_2697	2
scaffold_22	retained_intron	223722	223962	-	asmbl_29836,asmbl_29837	none	STRG.24671.1,STRG.24671.2,Trinity_GG_30815_c0_g1_i1,Trinity_GG_30815_c0_g1_i5,Trinity_GG_30815_c1_g1_i1,blat.proc3829899.chain_1813,blat.proc3829899.chain_1815,blat.proc3829899.chain_1818	8	STRG.24671.3	1
scaffold_6	retained_intron	3056262	3057109	+	asmbl_46749	none	blat.proc3829873.chain_3443	1	blat.proc3829873.chain_3441	1
scaffold_18	retained_intron	9258671	9259387	-	asmbl_20092,asmbl_20095	none	STRG.21559.2,STRG.21559.3,Trinity_GG_29070_c0_g1_i2,blat.proc3829897.chain_2411	4	STRG.21559.1,Trinity_GG_29070_c0_g1_i5,blat.proc3829897.chain_2410	3
scaffold_12	starts_in_intron	16176239	16176239	+	asmbl_9113	none	Trinity_GG_8421_c0_g1_i3,blat.proc3829877.chain_3741	2	STRG.15359.1,STRG.15359.3,Trinity_GG_8421_c0_g1_i2,Trinity_GG_8421_c0_g1_i4,blat.proc3829877.chain_3742,blat.proc3829877.chain_3744	6
scaffold_1	starts_in_intron	11619343	11619343	-	asmbl_654	none	Trinity_GG_17419_c1_g1_i1,blat.proc3829887.chain_660	2	STRG.768.1,STRG.768.2,blat.proc3829887.chain_658,blat.proc3829887.chain_659	4
scaffold_23	skipped_exon	2615438	2616744	-	asmbl_31470,asmbl_31476	none	STRG.25709.3,STRG.25709.5,blat.proc3829899.chain_2846	3	STRG.25709.1,STRG.25709.2,blat.proc3829899.chain_2843,blat.proc3829899.chain_2844,blat.proc3829899.chain_2845	5
scaffold_7	retained_exon	9836509	9836572	-	asmbl_49891,asmbl_49893	none	STRG.9171.2,STRG.9171.3,blat.proc3829891.chain_1398	3	STRG.9171.4,blat.proc3829891.chain_1397,blat.proc3829891.chain_1399	3
scaffold_18	ends_in_intron	13455562	13455562	+	asmbl_21039	none	blat.proc3829881.chain_2699	1	STRG.21780.2,blat.proc3829881.chain_2701	2
scaffold_7	alternate_exon	2707171	2707344	-	asmbl_49583	none	STRG.8688.2	1	STRG.8688.1,blat.proc3829891.chain_1043	2
scaffold_13	ends_in_intron	8111157	8111157	-	asmbl_9897	none	Trinity_GG_26035_c0_g1_i2,blat.proc3829895.chain_837	2	STRG.16078.1,blat.proc3829895.chain_836	2
scaffold_8	spliced_intron	6714778	6715271	+	asmbl_51951	none	STRG.10033.2,Trinity_GG_5558_c0_g1_i1,blat.proc3829875.chain_2486	3	STRG.10033.1,Trinity_GG_5558_c0_g1_i2,blat.proc3829875.chain_2485	3
scaffold_14	alt_acceptor	733745	733746	-	asmbl_12827	none	STRG.16734.1,blat.proc3829895.chain_1451	2	STRG.16734.2	1
scaffold_22	retained_intron	6991765	6991914	+	asmbl_29436	none	STRG.25008.2,Trinity_GG_13798_c0_g1_i2,blat.proc3829883.chain_1990,blat.proc3829883.chain_1992	4	blat.proc3829883.chain_1991	1
scaffold_18	ends_in_intron	1622267	1622267	+	asmbl_20396	none	blat.proc3829881.chain_1948	1	STRG.21039.1,blat.proc3829881.chain_1949,blat.proc3829881.chain_1950	3
scaffold_26	retained_intron	3573675	3573769	+	asmbl_35328	none	blat.proc3829885.chain_989	1	STRG.28019.1,blat.proc3829885.chain_988	2
scaffold_25	starts_in_intron	992715	992715	+	asmbl_33355	none	Trinity_GG_14954_c0_g1_i2,blat.proc3829885.chain_183	2	STRG.27140.1,STRG.27140.2,blat.proc3829885.chain_184	3
scaffold_7	alt_donor	11300266	11300267	+	asmbl_51047	none	STRG.9266.2,blat.proc3829875.chain_1708	2	STRG.9266.1	1
scaffold_9	alt_acceptor	16712611	16712612	-	asmbl_55579	none	STRG.11809.1,Trinity_GG_23547_c0_g1_i1,blat.proc3829893.chain_197	3	STRG.11809.2	1
scaffold_9	alternate_exon	10847163	10847376	-	asmbl_55226	none	STRG.11383.1,blat.proc3829891.chain_3527	2	STRG.11383.2	1
scaffold_16	alternate_exon	12017770	12017952	+	asmbl_17431	none	STRG.19717.1	1	Trinity_GG_10822_c0_g1_i3,blat.proc3829881.chain_608	2
scaffold_13	spliced_intron	4459323	4459424	+	asmbl_10773,asmbl_10775,asmbl_10778,asmbl_10779	none	STRG.15755.1,STRG.15755.2,blat.proc3829879.chain_448,blat.proc3829879.chain_449,blat.proc3829879.chain_450,blat.proc3829879.chain_452	6	STRG.15755.3,STRG.15755.4,Trinity_GG_8663_c0_g1_i6,Trinity_GG_8663_c0_g1_i7,blat.proc3829879.chain_451,blat.proc3829879.chain_453	6
scaffold_18	spliced_intron	7864869	7866089	-	asmbl_20020	none	blat.proc3829897.chain_2329	1	blat.proc3829897.chain_2328	1
scaffold_27	retained_exon	627096	627300	-	asmbl_36653,asmbl_36659	none	STRG.28563.2,STRG.28563.4,blat.proc3829901.chain_1749	3	STRG.28563.3,blat.proc3829901.chain_1754	2
scaffold_6	starts_in_intron	14899948	14899948	+	asmbl_47586	none	Trinity_GG_4552_c0_g1_i4,blat.proc3829875.chain_677	2	STRG.8258.1,STRG.8258.2,STRG.8258.3,Trinity_GG_4552_c0_g1_i1,Trinity_GG_4552_c0_g1_i2,blat.proc3829875.chain_675,blat.proc3829875.chain_676,blat.proc3829875.chain_678	8
scaffold_14	retained_intron	12014256	12014280	+	asmbl_12396	none	STRG.17523.2	1	blat.proc3829895.chain_2242	1
scaffold_11	starts_in_intron	8637948	8637948	+	asmbl_5782	none	Trinity_GG_7632_c0_g1_i1,blat.proc3829877.chain_2333	2	STRG.13877.1,Trinity_GG_7632_c0_g1_i3,Trinity_GG_7632_c0_g1_i4,blat.proc3829877.chain_2334,blat.proc3829877.chain_2335	5
scaffold_21	starts_in_intron	3142863	3142863	+	asmbl_28476	none	Trinity_GG_13265_c0_g1_i3,blat.proc3829883.chain_1095	2	STRG.23928.1,blat.proc3829883.chain_1094,blat.proc3829883.chain_1096	3
scaffold_10	skipped_exon	5174275	5176857	+	asmbl_4426,asmbl_4427,asmbl_4432	none	STRG.12337.1,STRG.12337.2,blat.proc3829877.chain_984,blat.proc3829877.chain_985	4	STRG.12337.3,blat.proc3829877.chain_983	2
scaffold_2	alt_acceptor	19194797	19194798	-	asmbl_23868	none	STRG.2791.2,blat.proc3829871.chain_2955	2	STRG.2791.3	1
scaffold_25	alt_donor	4117386	4117387	+	asmbl_33473	none	STRG.27327.2	1	STRG.27327.1,blat.proc3829885.chain_276,blat.proc3829885.chain_277	3
scaffold_4	starts_in_intron	12678004	12678004	-	asmbl_41691	none	blat.proc3829889.chain_971	1	STRG.4906.1,STRG.4906.2,blat.proc3829889.chain_969,blat.proc3829889.chain_970,blat.proc3829889.chain_972	5
scaffold_1	starts_in_intron	12450033	12450033	+	asmbl_2206	none	Trinity_GG_494_c0_g1_i4,blat.proc3829871.chain_885	2	STRG.856.2,STRG.856.3,STRG.856.4,STRG.856.5,Trinity_GG_494_c0_g1_i1,Trinity_GG_494_c0_g1_i3,Trinity_GG_494_c0_g1_i6,blat.proc3829871.chain_882,blat.proc3829871.chain_884,blat.proc3829871.chain_887	10
scaffold_19	alt_donor	13035594	13035595	-	asmbl_21804	none	STRG.22614.1,blat.proc3829897.chain_3380	2	STRG.22614.3,blat.proc3829897.chain_3381	2
scaffold_25	alternate_exon	443177	443279	+	asmbl_33324	none	STRG.27072.1	1	STRG.27072.2	1
scaffold_28	starts_in_intron	5208588	5208588	-	asmbl_37572	none	blat.proc3829901.chain_2756	1	STRG.29645.1	1
scaffold_4	starts_in_intron	8770705	8770705	+	asmbl_42912,asmbl_42915,asmbl_42916	none	STRG.4690.3,STRG.4690.4,STRG.4690.5,Trinity_GG_2586_c0_g1_i2,blat.proc3829873.chain_1026	5	STRG.4690.1,STRG.4690.2,blat.proc3829873.chain_1027	3
scaffold_15	skipped_exon	15761181	15761965	+	asmbl_14771	none	STRG.18952.1,Trinity_GG_10391_c0_g1_i2,blat.proc3829879.chain_3570	3	STRG.18952.2,Trinity_GG_10391_c0_g1_i1,blat.proc3829879.chain_3571	3
scaffold_8	spliced_intron	4859675	4859836	-	asmbl_52803	none	STRG.9940.1,blat.proc3829891.chain_2117	2	blat.proc3829891.chain_2118	1
scaffold_14	spliced_intron	11764873	11765001	-	asmbl_13516	none	STRG.17518.1,blat.proc3829895.chain_2229	2	blat.proc3829895.chain_2228	1
scaffold_14	alt_acceptor	404449	404450	+	asmbl_11721,asmbl_11722,asmbl_11724,asmbl_11726,asmbl_11728,asmbl_11730	none	STRG.16722.2,STRG.16722.3,STRG.16722.5,STRG.16722.7,blat.proc3829879.chain_1464,blat.proc3829879.chain_1470	6	STRG.16722.1,STRG.16722.4,STRG.16722.6,blat.proc3829879.chain_1463,blat.proc3829879.chain_1467,blat.proc3829879.chain_1473	6
scaffold_6	alt_acceptor	17886314	17886315	+	asmbl_47737	none	STRG.8475.2,Trinity_GG_4642_c0_g1_i4,blat.proc3829875.chain_830	3	Trinity_GG_4642_c0_g1_i3,blat.proc3829875.chain_829	2
scaffold_17	alt_acceptor	11959236	11959237	-	asmbl_19352	none	blat.proc3829897.chain_1671	1	STRG.20711.2,STRG.20711.3,blat.proc3829897.chain_1669	3
scaffold_4	retained_intron	5650431	5650953	-	asmbl_41363,asmbl_41366	none	blat.proc3829889.chain_603,blat.proc3829889.chain_611	2	STRG.4469.1,STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_606,blat.proc3829889.chain_607,blat.proc3829889.chain_608,blat.proc3829889.chain_612	8
scaffold_18	spliced_intron	1862675	1862768	-	asmbl_19683,asmbl_19684	none	STRG.21063.2,STRG.21063.3,blat.proc3829897.chain_1841	3	STRG.21063.1,blat.proc3829897.chain_1842	2
scaffold_4	spliced_intron	4113774	4113870	-	asmbl_41228	none	blat.proc3829889.chain_377	1	blat.proc3829889.chain_374	1
scaffold_27	alt_acceptor	3000383	3000384	+	asmbl_36118,asmbl_36121	none	STRG.28767.3,STRG.28767.5	2	STRG.28767.1,STRG.28767.2,STRG.28767.4,blat.proc3829885.chain_1838,blat.proc3829885.chain_1839,blat.proc3829885.chain_1841,blat.proc3829885.chain_1842,blat.proc3829885.chain_1843,blat.proc3829885.chain_1847	9
scaffold_20	starts_in_intron	10369137	10369137	+	asmbl_26105	none	STRG.23561.2	1	STRG.23561.1	1
scaffold_15	retained_intron	13972065	13972165	+	asmbl_14609	none	blat.proc3829879.chain_3421	1	STRG.18817.1,Trinity_GG_10330_c0_g1_i1,blat.proc3829879.chain_3419	3
scaffold_7	alt_acceptor	5240415	5240416	+	asmbl_50682,asmbl_50684,asmbl_50686,asmbl_50687	none	STRG.8853.1,blat.proc3829875.chain_1292,blat.proc3829875.chain_1293,blat.proc3829875.chain_1294,blat.proc3829875.chain_1296	5	STRG.8853.2	1
scaffold_5	ends_in_intron	8145176	8145176	+	asmbl_44199	none	blat.proc3829873.chain_2336	1	STRG.6171.1,STRG.6171.2,STRG.6171.3,blat.proc3829873.chain_2331,blat.proc3829873.chain_2332,blat.proc3829873.chain_2333,blat.proc3829873.chain_2334,blat.proc3829873.chain_2335	8
scaffold_3	spliced_intron	4282352	4282433	+	asmbl_39954	none	STRG.3120.2	1	STRG.3120.1	1
scaffold_1	alt_donor	14355987	14355988	-	asmbl_908	none	blat.proc3829887.chain_909	1	blat.proc3829887.chain_906,blat.proc3829887.chain_907	2
scaffold_2	retained_exon	13897141	13897181	-	asmbl_23554,asmbl_23555	none	STRG.2382.2,blat.proc3829887.chain_2290	2	STRG.2382.1,blat.proc3829887.chain_2289	2
scaffold_1	spliced_intron	8644831	8644990	-	asmbl_473,asmbl_481	none	STRG.572.1,STRG.572.2,blat.proc3829887.chain_455,blat.proc3829887.chain_458	4	STRG.572.3,blat.proc3829887.chain_454,blat.proc3829887.chain_456,blat.proc3829887.chain_457	4
scaffold_4	retained_intron	1618801	1618830	+	asmbl_42443	none	STRG.4194.1	1	STRG.4194.2	1
scaffold_23	ends_in_intron	6630971	6630971	+	asmbl_30929	none	blat.proc3829883.chain_2818	1	STRG.25985.1,blat.proc3829883.chain_2814	2
scaffold_10	retained_intron	17090940	17090995	-	asmbl_3931	none	STRG.13143.1	1	STRG.13143.2	1
scaffold_5	retained_intron	11992233	11993057	-	asmbl_45813	none	blat.proc3829889.chain_2520	1	STRG.6447.3,STRG.6447.4,STRG.6447.5,blat.proc3829889.chain_2519	4
scaffold_24	ends_in_intron	3760015	3760015	-	asmbl_32834	none	Trinity_GG_31853_c0_g1_i5,blat.proc3829899.chain_3609	2	STRG.26554.1,blat.proc3829899.chain_3606,blat.proc3829899.chain_3608	3
scaffold_1	retained_exon	18765211	18765283	+	asmbl_2556	none	STRG.1310.2	1	STRG.1310.1,STRG.1310.3	2
scaffold_23	retained_intron	4449320	4449423	-	asmbl_31589	none	Trinity_GG_31473_c0_g1_i3,blat.proc3829899.chain_2972	2	STRG.25842.1,STRG.25842.2,STRG.25842.3,STRG.25842.4,Trinity_GG_31473_c0_g1_i1,Trinity_GG_31473_c0_g1_i2,Trinity_GG_31473_c0_g1_i4,Trinity_GG_31473_c0_g1_i6,blat.proc3829899.chain_2968,blat.proc3829899.chain_2969,blat.proc3829899.chain_2970,blat.proc3829899.chain_2971	12
scaffold_28	alt_acceptor	5241996	5241997	+	asmbl_38272,asmbl_38273	none	STRG.29653.1,Trinity_GG_16447_c0_g1_i2,Trinity_GG_16447_c0_g1_i3,blat.proc3829885.chain_2778,blat.proc3829885.chain_2779	5	STRG.29653.3	1
scaffold_1	alt_acceptor	11177132	11177133	+	asmbl_2072	none	blat.proc3829871.chain_822	1	STRG.743.1,STRG.743.2,STRG.743.3,STRG.743.4,STRG.743.5,blat.proc3829871.chain_815,blat.proc3829871.chain_819,blat.proc3829871.chain_820,blat.proc3829871.chain_821,blat.proc3829871.chain_824,blat.proc3829871.chain_825	11
scaffold_2	alt_donor	18707654	18707655	+	asmbl_25265	none	STRG.2747.1,Trinity_GG_1541_c0_g1_i3,blat.proc3829871.chain_2911	3	STRG.2747.2,Trinity_GG_1541_c0_g1_i1,Trinity_GG_1541_c0_g1_i2,blat.proc3829871.chain_2909,blat.proc3829871.chain_2910	5
scaffold_22	starts_in_intron	6877456	6877456	+	asmbl_29425	none	Trinity_GG_13829_c0_g1_i3,blat.proc3829883.chain_2052	2	STRG.24988.1,STRG.24988.2,blat.proc3829883.chain_2050,blat.proc3829883.chain_2051	4
scaffold_1	retained_intron	14191116	14191205	-	asmbl_879	none	blat.proc3829887.chain_948	1	STRG.1005.1,blat.proc3829887.chain_944,blat.proc3829887.chain_945,blat.proc3829887.chain_947,blat.proc3829887.chain_949	5
scaffold_2	alt_donor	15686309	15686310	+	asmbl_25090,asmbl_25092	none	STRG.2521.1,STRG.2521.3,Trinity_GG_1432_c0_g1_i1,Trinity_GG_1432_c0_g1_i4,blat.proc3829871.chain_2712	5	STRG.2521.2,Trinity_GG_1432_c0_g1_i2,blat.proc3829871.chain_2714	3
scaffold_25	alternate_exon	8698556	8700065	-	asmbl_34432	none	STRG.27678.4,Trinity_GG_32508_c1_g1_i1,blat.proc3829901.chain_955,blat.proc3829901.chain_961	4	STRG.27678.3,STRG.27678.5,blat.proc3829901.chain_953	3
scaffold_5	alternate_exon	18823580	18829619	+	asmbl_44946,asmbl_44947	none	STRG.7003.1,STRG.7003.2,Trinity_GG_3852_c0_g1_i1,Trinity_GG_3852_c0_g1_i2,blat.proc3829873.chain_3155,blat.proc3829873.chain_3156	6	STRG.7003.3	1
scaffold_10	ends_in_intron	10401762	10401762	+	asmbl_4690	none	blat.proc3829877.chain_1266	1	STRG.12718.1,blat.proc3829877.chain_1267	2
scaffold_16	starts_in_intron	4089060	4089060	+	asmbl_16961	none	blat.proc3829881.chain_85	1	STRG.19214.1	1
scaffold_8	starts_in_intron	16651161	16651161	+	asmbl_52451	none	Trinity_GG_5922_c1_g1_i1,Trinity_GG_5922_c1_g1_i3,blat.proc3829875.chain_3167,blat.proc3829875.chain_3169	4	STRG.10626.1,blat.proc3829875.chain_3168	2
scaffold_11	starts_in_intron	8180091	8180091	-	asmbl_6831	none	Trinity_GG_24712_c0_g1_i1,blat.proc3829893.chain_2213	2	STRG.13812.1,Trinity_GG_24712_c0_g1_i2,blat.proc3829893.chain_2212	3
scaffold_11	alternate_exon	5656799	5659475	+	asmbl_5538	none	STRG.13619.1,Trinity_GG_7502_c0_g1_i1,blat.proc3829877.chain_2118	3	STRG.13619.2	1
scaffold_3	ends_in_intron	18162545	18162545	-	asmbl_39547	none	Trinity_GG_19244_c0_g1_i1,blat.proc3829889.chain_102	2	STRG.4024.1,blat.proc3829889.chain_101	2
scaffold_144	alt_acceptor	9769	9770	-	asmbl_13866	none	STRG.30163.1	1	STRG.30163.2	1
scaffold_10	alternate_exon	17059394	17060069	-	asmbl_3929	none	STRG.13142.3	1	STRG.13142.2	1
scaffold_14	starts_in_intron	8215484	8215484	-	asmbl_13242	none	blat.proc3829895.chain_1930	1	STRG.17218.1,STRG.17218.2,STRG.17218.3,Trinity_GG_26673_c0_g1_i5,blat.proc3829895.chain_1928,blat.proc3829895.chain_1929,blat.proc3829895.chain_1931,blat.proc3829895.chain_1932	8
scaffold_28	skipped_exon	6546537	6547929	-	asmbl_37680	none	STRG.29730.3	1	STRG.29730.1,STRG.29730.2,STRG.29730.4	3
scaffold_26	alt_acceptor	5515226	5515227	+	asmbl_35539	none	STRG.28247.1,blat.proc3829885.chain_1271	2	STRG.28247.2,blat.proc3829885.chain_1270	2
scaffold_3	spliced_intron	14186116	14186271	-	asmbl_39277,asmbl_39279,asmbl_39280	none	STRG.3759.3,STRG.3759.4,STRG.3759.5,Trinity_GG_19089_c0_g1_i5,blat.proc3829887.chain_3542	5	STRG.3759.1,STRG.3759.2,blat.proc3829887.chain_3546	3
scaffold_11	spliced_intron	8040872	8040989	-	asmbl_6794	none	STRG.13796.1,blat.proc3829893.chain_2263	2	blat.proc3829893.chain_2264	1
scaffold_4	alt_acceptor	1980880	1980881	+	asmbl_42479	none	STRG.4223.1,blat.proc3829873.chain_579	2	STRG.4223.2	1
scaffold_7	retained_intron	706941	707196	-	asmbl_49503	none	blat.proc3829891.chain_955	1	STRG.8597.2,STRG.8597.3,Trinity_GG_21931_c0_g1_i2,Trinity_GG_21931_c0_g1_i6,blat.proc3829891.chain_952,blat.proc3829891.chain_953,blat.proc3829891.chain_954	7
scaffold_23	skipped_exon	4321528	4322836	-	asmbl_31582	none	STRG.25830.1,blat.proc3829899.chain_2960	2	STRG.25830.2,blat.proc3829899.chain_2961	2
scaffold_26	alt_donor	10119722	10119723	-	asmbl_35086,asmbl_35088,asmbl_35090,asmbl_35092,asmbl_35093,asmbl_35094	none	STRG.28511.1,STRG.28511.2,STRG.28511.3,Trinity_GG_32936_c0_g1_i11,Trinity_GG_32936_c0_g1_i13,Trinity_GG_32936_c0_g1_i3,Trinity_GG_32936_c0_g1_i8,blat.proc3829901.chain_1632,blat.proc3829901.chain_1634,blat.proc3829901.chain_1635,blat.proc3829901.chain_1636	11	Trinity_GG_32936_c0_g1_i5,blat.proc3829901.chain_1633	2
scaffold_6	retained_intron	3805997	3806086	+	asmbl_46808,asmbl_46811,asmbl_46812	none	STRG.7379.1,STRG.7379.3,Trinity_GG_4055_c0_g1_i10,blat.proc3829873.chain_3520	4	Trinity_GG_4055_c0_g1_i12,blat.proc3829873.chain_3525	2
scaffold_3	retained_intron	5951042	5951658	-	asmbl_38838	none	STRG.3255.6,blat.proc3829887.chain_3049	2	STRG.3255.5,STRG.3255.7,blat.proc3829887.chain_3047	3
scaffold_11	spliced_intron	4666941	4667075	+	asmbl_5459,asmbl_5460	none	blat.proc3829877.chain_1979,blat.proc3829877.chain_1981,blat.proc3829877.chain_1982	3	STRG.13546.2,STRG.13546.4,Trinity_GG_7415_c0_g1_i2,blat.proc3829877.chain_1980	4
scaffold_16	starts_in_intron	212856	212856	+	asmbl_16796	none	Trinity_GG_10420_c0_g2_i1,blat.proc3829879.chain_3624	2	STRG.19006.1,STRG.19006.2,blat.proc3829879.chain_3621,blat.proc3829879.chain_3623	4
scaffold_24	alt_acceptor	2465449	2465450	-	asmbl_32778,asmbl_32781	none	STRG.26455.2,blat.proc3829899.chain_3524,blat.proc3829899.chain_3525	3	STRG.26455.1,STRG.26455.3	2
scaffold_23	alternate_exon	7279357	7281830	-	asmbl_31740	none	STRG.26034.1,blat.proc3829899.chain_3127	2	STRG.26034.4	1
scaffold_12	skipped_exon	9827222	9828926	+	asmbl_8846	none	STRG.14936.2,Trinity_GG_8237_c0_g1_i2,blat.proc3829877.chain_3406	3	STRG.14936.1,Trinity_GG_8237_c0_g1_i1,blat.proc3829877.chain_3405	3
scaffold_23	alt_acceptor	10990900	10990901	-	asmbl_31899	none	STRG.26288.2	1	STRG.26288.1,blat.proc3829899.chain_3317	2
scaffold_27	alternate_exon	5411453	5411493	-	asmbl_36962	none	STRG.28934.1	1	STRG.28934.2	1
scaffold_2	skipped_exon	1595420	1595710	+	asmbl_24235,asmbl_24238	none	STRG.1628.4,blat.proc3829871.chain_1669	2	STRG.1628.1,STRG.1628.2,STRG.1628.3,blat.proc3829871.chain_1668	4
scaffold_16	retained_intron	8070830	8070976	-	asmbl_16402	none	Trinity_GG_27939_c0_g1_i2,blat.proc3829897.chain_495	2	STRG.19439.1,Trinity_GG_27939_c0_g1_i1	2
scaffold_16	alt_acceptor	14489467	14489468	+	asmbl_17483,asmbl_17486	none	STRG.19814.1,blat.proc3829881.chain_700,blat.proc3829881.chain_702	3	STRG.19814.2,blat.proc3829881.chain_701	2
scaffold_13	alternate_exon	13569493	13570251	+	asmbl_11378	none	STRG.16402.1	1	Trinity_GG_9001_c0_g1_i1,Trinity_GG_9001_c0_g1_i2,blat.proc3829879.chain_1119,blat.proc3829879.chain_1120	4
scaffold_25	retained_intron	5625977	5626514	-	asmbl_34251,asmbl_34252	none	STRG.27446.2,Trinity_GG_32396_c0_g1_i2,Trinity_GG_32396_c0_g1_i3,blat.proc3829901.chain_764,blat.proc3829901.chain_766	5	STRG.27446.1,Trinity_GG_32396_c0_g1_i1,blat.proc3829901.chain_765	3
scaffold_6	retained_intron	14252463	14253506	-	asmbl_48932	none	STRG.8181.3,Trinity_GG_21638_c0_g1_i2,blat.proc3829891.chain_444	3	blat.proc3829891.chain_445	1
scaffold_18	alt_donor	4074374	4074375	+	asmbl_20519,asmbl_20521	none	STRG.21198.3,STRG.21198.4	2	STRG.21198.1,STRG.21198.2	2
scaffold_8	retained_intron	10484487	10484569	+	asmbl_52162	none	blat.proc3829875.chain_2784	1	STRG.10277.1,blat.proc3829875.chain_2786	2
scaffold_6	starts_in_intron	9135494	9135494	+	asmbl_47150	none	blat.proc3829875.chain_200	1	STRG.7784.1,STRG.7784.2,STRG.7784.3,STRG.7784.4,STRG.7784.5,blat.proc3829875.chain_195,blat.proc3829875.chain_197,blat.proc3829875.chain_198,blat.proc3829875.chain_201,blat.proc3829875.chain_202,blat.proc3829875.chain_203,blat.proc3829875.chain_204	12
scaffold_14	spliced_intron	1127545	1127620	+	asmbl_11783	none	STRG.16758.1,Trinity_GG_9190_c0_g1_i2,blat.proc3829879.chain_1417	3	STRG.16758.2,Trinity_GG_9190_c0_g1_i1,blat.proc3829879.chain_1416	3
scaffold_28	retained_exon	5014596	5014675	+	asmbl_38250,asmbl_38252	none	STRG.29628.1,STRG.29628.2,Trinity_GG_16433_c0_g2_i3,blat.proc3829885.chain_2757	4	STRG.29628.3,Trinity_GG_16433_c0_g2_i4,blat.proc3829885.chain_2755	3
scaffold_11	alt_donor	13256180	13256181	+	asmbl_6017	none	STRG.14184.2,blat.proc3829877.chain_2651	2	STRG.14184.3	1
scaffold_24	ends_in_intron	6445370	6445370	+	asmbl_32320	none	blat.proc3829883.chain_3604	1	blat.proc3829883.chain_3603	1
scaffold_28	alt_donor	6515533	6515534	-	asmbl_37673	none	STRG.29726.2	1	blat.proc3829901.chain_2784	1
scaffold_14	ends_in_intron	6661408	6661408	+	asmbl_12074	none	blat.proc3829879.chain_1833	1	STRG.17096.1,blat.proc3829879.chain_1832	2
scaffold_1	alternate_exon	9651993	9652115	-	asmbl_562	none	STRG.651.2,blat.proc3829887.chain_547	2	STRG.651.1,blat.proc3829887.chain_549	2
scaffold_8	retained_intron	5314598	5314889	-	asmbl_52822	none	STRG.9959.1,Trinity_GG_22542_c0_g1_i1,blat.proc3829891.chain_2069	3	STRG.9959.2,blat.proc3829891.chain_2070	2
scaffold_19	starts_in_intron	3670196	3670196	-	asmbl_21326	none	Trinity_GG_29269_c0_g1_i1	1	STRG.22034.1,STRG.22034.3,Trinity_GG_29269_c0_g1_i2,Trinity_GG_29269_c0_g1_i6,blat.proc3829897.chain_2742,blat.proc3829897.chain_2743,blat.proc3829897.chain_2745	7
scaffold_6	alternate_exon	13004825	13005187	-	asmbl_48808	none	STRG.8061.9,blat.proc3829891.chain_276	2	STRG.8061.1,STRG.8061.2,STRG.8061.3,STRG.8061.4,STRG.8061.5,STRG.8061.6,STRG.8061.7,STRG.8061.8,Trinity_GG_21547_c0_g1_i11,Trinity_GG_21547_c0_g1_i15,Trinity_GG_21547_c0_g1_i2,Trinity_GG_21547_c0_g1_i7,blat.proc3829891.chain_260,blat.proc3829891.chain_262,blat.proc3829891.chain_264,blat.proc3829891.chain_267,blat.proc3829891.chain_269,blat.proc3829891.chain_270,blat.proc3829891.chain_271,blat.proc3829891.chain_273,blat.proc3829891.chain_274,blat.proc3829891.chain_275	22
scaffold_1	alt_acceptor	16715881	16715882	-	asmbl_1009,asmbl_1010,asmbl_1012	none	STRG.1175.2,STRG.1175.3,STRG.1175.4,blat.proc3829887.chain_1051	4	STRG.1175.5,STRG.1175.6,blat.proc3829887.chain_1050	3
scaffold_1	alternate_exon	11424272	11424356	+	asmbl_2095	none	STRG.751.2	1	STRG.751.1,blat.proc3829871.chain_801	2
scaffold_8	retained_intron	8607259	8607362	-	asmbl_52960	none	blat.proc3829891.chain_2290	1	STRG.10108.1,blat.proc3829891.chain_2288	2
scaffold_8	alt_donor	11463997	11463998	+	asmbl_52214	none	STRG.10344.2,Trinity_GG_5769_c0_g1_i1,blat.proc3829875.chain_2872	3	STRG.10344.3	1
scaffold_13	skipped_exon	2333469	2335810	+	asmbl_10576,asmbl_10588,asmbl_10590	none	STRG.15543.3,STRG.15543.6,STRG.15543.7	3	STRG.15543.4,STRG.15543.9	2
scaffold_20	ends_in_intron	11684066	11684066	+	asmbl_26240	none	Trinity_GG_13102_c1_g1_i1,blat.proc3829883.chain_807	2	STRG.23664.1,blat.proc3829883.chain_805	2
scaffold_12	retained_intron	16399852	16401681	+	asmbl_9131,asmbl_9132,asmbl_9133	none	STRG.15385.1,STRG.15385.4,STRG.15385.6,Trinity_GG_8419_c0_g1_i1,Trinity_GG_8419_c0_g1_i2,Trinity_GG_8419_c0_g1_i6,blat.proc3829877.chain_3734,blat.proc3829877.chain_3735,blat.proc3829877.chain_3736	9	STRG.15385.3	1
scaffold_12	retained_intron	12341400	12341510	-	asmbl_8007	none	Trinity_GG_25457_c0_g1_i1,blat.proc3829893.chain_3520	2	STRG.15125.1,blat.proc3829893.chain_3521,blat.proc3829893.chain_3522	3
scaffold_10	alt_acceptor	11598329	11598330	+	asmbl_4751	none	STRG.12807.2	1	STRG.12807.1	1
scaffold_6	spliced_intron	13919016	13919162	-	asmbl_48896	none	STRG.8132.3	1	STRG.8132.1,blat.proc3829891.chain_439,blat.proc3829891.chain_440	3
scaffold_22	ends_in_intron	6125963	6125963	+	asmbl_29395,asmbl_29400	none	STRG.24955.1,STRG.24955.2	2	STRG.24955.3,STRG.24955.4,blat.proc3829883.chain_1996,blat.proc3829883.chain_1997,blat.proc3829883.chain_1998,blat.proc3829883.chain_2002	6
scaffold_21	alternate_exon	7914321	7914476	-	asmbl_27885	none	STRG.24311.3	1	STRG.24311.1,blat.proc3829899.chain_1283	2
scaffold_8	alt_donor	9401157	9401158	+	asmbl_52062	none	STRG.10193.1,Trinity_GG_5642_c0_g1_i1,blat.proc3829875.chain_2652	3	STRG.10193.2,Trinity_GG_5642_c0_g1_i2,blat.proc3829875.chain_2654	3
scaffold_28	retained_intron	5638196	5638636	-	asmbl_37635,asmbl_37636	none	STRG.29677.3,blat.proc3829901.chain_2822	2	STRG.29677.1,STRG.29677.2,STRG.29677.4,Trinity_GG_33665_c0_g1_i3,blat.proc3829901.chain_2823,blat.proc3829901.chain_2825,blat.proc3829901.chain_2827	7
scaffold_17	retained_intron	3839188	3839302	+	asmbl_17871	none	blat.proc3829881.chain_938	1	STRG.20133.1,blat.proc3829881.chain_937,blat.proc3829881.chain_939	3
scaffold_5	skipped_exon	15044032	15044293	-	asmbl_46014,asmbl_46022	none	STRG.6692.3,STRG.6692.6	2	STRG.6692.2,STRG.6692.5,STRG.6692.7,STRG.6692.9	4
scaffold_10	spliced_intron	8897219	8897475	-	asmbl_3533,asmbl_3534,asmbl_3536,asmbl_3539,asmbl_3540,asmbl_3542	none	STRG.12629.1,blat.proc3829893.chain_1129,blat.proc3829893.chain_1130,blat.proc3829893.chain_1131,blat.proc3829893.chain_1133,blat.proc3829893.chain_1136	6	blat.proc3829893.chain_1135	1
scaffold_9	spliced_intron	6717195	6717297	-	asmbl_55029	none	STRG.11175.1	1	STRG.11175.2	1
scaffold_12	alt_acceptor	5659356	5659357	+	asmbl_8624	none	STRG.14707.1,blat.proc3829877.chain_3193	2	STRG.14707.2	1
scaffold_24	spliced_intron	9934311	9934385	+	asmbl_32538	none	STRG.26948.1,blat.proc3829885.chain_93	2	blat.proc3829885.chain_94	1
scaffold_17	alternate_exon	9853222	9853252	-	asmbl_19251	none	STRG.20594.3,Trinity_GG_28589_c1_g1_i1,blat.proc3829897.chain_1534	3	STRG.20594.1	1
scaffold_13	starts_in_intron	12243177	12243177	-	asmbl_10093	none	blat.proc3829895.chain_1096	1	STRG.16344.1,STRG.16344.2,STRG.16344.3,blat.proc3829895.chain_1094,blat.proc3829895.chain_1095,blat.proc3829895.chain_1097	6
scaffold_9	spliced_intron	6290195	6290500	+	asmbl_54075	none	STRG.11156.1,blat.proc3829875.chain_3604	2	STRG.11156.2,blat.proc3829875.chain_3603	2
scaffold_6	alternate_exon	5183824	5184729	-	asmbl_48343	none	STRG.7482.1	1	STRG.7482.2	1
scaffold_17	retained_intron	1054282	1054550	-	asmbl_18710	none	Trinity_GG_28199_c0_g1_i2,blat.proc3829897.chain_890	2	STRG.19934.1	1
scaffold_23	retained_intron	2610389	2611916	-	asmbl_31472	none	blat.proc3829899.chain_2842	1	STRG.25709.1,STRG.25709.2,STRG.25709.3,blat.proc3829899.chain_2843,blat.proc3829899.chain_2844,blat.proc3829899.chain_2846	6
scaffold_18	spliced_intron	7686561	7686708	+	asmbl_20807,asmbl_20809	none	STRG.21464.3,blat.proc3829881.chain_2440	2	STRG.21464.2,STRG.21464.4,Trinity_GG_11863_c0_g1_i9,blat.proc3829881.chain_2433,blat.proc3829881.chain_2434,blat.proc3829881.chain_2435,blat.proc3829881.chain_2436	7
scaffold_2	alt_acceptor	15287741	15287742	+	asmbl_25047	none	STRG.2476.1	1	STRG.2476.3	1
scaffold_8	alternate_exon	14405390	14405536	-	asmbl_53318	none	blat.proc3829891.chain_2544	1	STRG.10520.1,blat.proc3829891.chain_2543	2
scaffold_7	alt_donor	130248	130249	-	asmbl_49477,asmbl_49478	none	STRG.8585.4,STRG.8585.8	2	STRG.8585.1,blat.proc3829891.chain_992,blat.proc3829891.chain_998	3
scaffold_3	starts_in_intron	15785345	15785345	-	asmbl_39400	none	blat.proc3829887.chain_3690	1	STRG.3856.2	1
scaffold_8	retained_exon	11270088	11270215	-	asmbl_53137	none	STRG.10329.1,blat.proc3829891.chain_2492	2	STRG.10329.2,blat.proc3829891.chain_2491	2
scaffold_13	ends_in_intron	15342788	15342788	-	asmbl_10209	none	STRG.16565.2	1	STRG.16565.1	1
scaffold_9	retained_exon	645134	645735	+	asmbl_53761	none	STRG.10785.1,blat.proc3829875.chain_3238	2	STRG.10785.3	1
scaffold_6	ends_in_intron	7848955	7848955	+	asmbl_47020	none	blat.proc3829875.chain_5	1	STRG.7662.1,STRG.7662.2,STRG.7662.5	3
scaffold_10	alt_acceptor	6072208	6072209	-	asmbl_3340	none	STRG.12437.3,blat.proc3829893.chain_920	2	STRG.12437.1,STRG.12437.2,blat.proc3829893.chain_918,blat.proc3829893.chain_919,blat.proc3829893.chain_922,blat.proc3829893.chain_924	6
scaffold_9	retained_intron	11843908	11844161	-	asmbl_55296	none	blat.proc3829891.chain_3619	1	STRG.11491.1,blat.proc3829891.chain_3620,blat.proc3829891.chain_3621,blat.proc3829891.chain_3622,blat.proc3829891.chain_3623,blat.proc3829891.chain_3624,blat.proc3829891.chain_3625,blat.proc3829891.chain_3626	8
scaffold_18	retained_exon	6901792	6901898	+	asmbl_20720	none	STRG.21380.1,blat.proc3829881.chain_2343	2	Trinity_GG_11804_c0_g1_i2,blat.proc3829881.chain_2344	2
scaffold_22	starts_in_intron	2999099	2999099	-	asmbl_29926	none	blat.proc3829899.chain_1884	1	STRG.24772.1,STRG.24772.2,blat.proc3829899.chain_1883	3
scaffold_2	starts_in_intron	15698839	15698839	+	asmbl_25094,asmbl_25095	none	blat.proc3829871.chain_2674	1	STRG.2526.1,blat.proc3829871.chain_2676	2
scaffold_17	alt_acceptor	1727808	1727809	+	asmbl_17753	none	STRG.19996.1,blat.proc3829881.chain_836	2	STRG.19996.2	1
scaffold_13	starts_in_intron	742416	742416	+	asmbl_10486	none	blat.proc3829879.chain_135	1	STRG.15446.1,STRG.15446.2,STRG.15446.3,Trinity_GG_8496_c0_g1_i2,blat.proc3829879.chain_131,blat.proc3829879.chain_132,blat.proc3829879.chain_133	7
scaffold_2	retained_intron	4579215	4579828	+	asmbl_24379,asmbl_24385	none	Trinity_GG_1044_c1_g1_i4,blat.proc3829871.chain_1915,blat.proc3829871.chain_1917	3	STRG.1884.1,STRG.1884.2,STRG.1884.3,blat.proc3829871.chain_1916	4
scaffold_14	alt_donor	13601236	13601237	+	asmbl_12469,asmbl_12470	none	STRG.17629.1,STRG.17629.2	2	blat.proc3829879.chain_2306,blat.proc3829879.chain_2307	2
scaffold_1	retained_intron	43037	43442	-	asmbl_1	none	STRG.19.2,Trinity_GG_17053_c0_g1_i7,blat.proc3829885.chain_3734	3	STRG.19.1,STRG.19.3,blat.proc3829885.chain_3729,blat.proc3829885.chain_3731,blat.proc3829885.chain_3732	5
scaffold_21	alternate_exon	7727561	7734029	+	asmbl_28779	none	STRG.24301.2,Trinity_GG_13435_c0_g1_i1,blat.proc3829883.chain_1400,blat.proc3829883.chain_1449	4	STRG.24301.3	1
scaffold_10	retained_intron	11486695	11488591	+	asmbl_4737	none	STRG.12796.2,Trinity_GG_7058_c0_g2_i1,blat.proc3829877.chain_1372	3	STRG.12796.1	1
scaffold_3	alt_acceptor	7583131	7583132	+	asmbl_40124	none	STRG.3342.2,blat.proc3829871.chain_3539	2	STRG.3342.1,blat.proc3829871.chain_3538	2
scaffold_5	retained_intron	14732294	14732395	-	asmbl_45996	none	Trinity_GG_20753_c0_g1_i2,blat.proc3829889.chain_2715	2	STRG.6667.1,blat.proc3829889.chain_2713,blat.proc3829889.chain_2716	3
scaffold_22	ends_in_intron	4238763	4238763	-	asmbl_29981	none	Trinity_GG_30899_c1_g1_i5,blat.proc3829899.chain_1982	2	STRG.24838.1,STRG.24838.2,STRG.24838.3,STRG.24838.4,blat.proc3829899.chain_1980,blat.proc3829899.chain_1981,blat.proc3829899.chain_1983	7
scaffold_11	alternate_exon	3138393	3140023	-	asmbl_6511	none	STRG.13434.3	1	blat.proc3829893.chain_1873	1
scaffold_6	retained_exon	2843958	2844035	-	asmbl_48115	none	STRG.7273.3,blat.proc3829889.chain_3203,blat.proc3829889.chain_3205	3	STRG.7273.1,STRG.7273.2,blat.proc3829889.chain_3202,blat.proc3829889.chain_3204	4
scaffold_11	starts_in_intron	188050	188050	+	asmbl_5232	none	Trinity_GG_7281_c0_g1_i3	1	STRG.13236.2	1
scaffold_20	retained_intron	1754144	1754287	+	asmbl_25607,asmbl_25608	none	STRG.22907.1,STRG.22907.4,blat.proc3829883.chain_56	3	STRG.22907.2,Trinity_GG_12636_c0_g1_i2,blat.proc3829883.chain_55	3
scaffold_2	starts_in_intron	8063546	8063546	+	asmbl_24646	none	Trinity_GG_1147_c0_g1_i1,blat.proc3829871.chain_2095	2	STRG.2103.1,blat.proc3829871.chain_2094	2
scaffold_15	retained_intron	15906139	15906230	-	asmbl_15823	none	Trinity_GG_27666_c0_g1_i8,blat.proc3829895.chain_3732	2	STRG.18963.1,Trinity_GG_27666_c0_g1_i1,Trinity_GG_27666_c0_g1_i3,Trinity_GG_27666_c0_g1_i4,Trinity_GG_27666_c0_g1_i5,Trinity_GG_27666_c0_g1_i9,blat.proc3829895.chain_3733,blat.proc3829895.chain_3734,blat.proc3829895.chain_3735,blat.proc3829895.chain_3736,blat.proc3829895.chain_3737	11
scaffold_12	starts_in_intron	10515682	10515682	-	asmbl_7886	none	blat.proc3829893.chain_3397	1	STRG.15004.1,blat.proc3829893.chain_3398	2
scaffold_18	spliced_intron	9804399	9804418	-	asmbl_20124	none	STRG.21582.2	1	STRG.21582.1,STRG.21582.3,Trinity_GG_29051_c2_g1_i1	3
scaffold_9	alt_donor	12453992	12453993	+	asmbl_54416	none	STRG.11551.1,blat.proc3829877.chain_310	2	STRG.11551.2,blat.proc3829877.chain_311	2
scaffold_15	alt_acceptor	14743444	14743445	-	asmbl_15760	none	STRG.18879.2,blat.proc3829895.chain_3658	2	STRG.18879.1,blat.proc3829895.chain_3657	2
scaffold_24	ends_in_intron	10167329	10167329	+	asmbl_32548	none	blat.proc3829885.chain_105	1	STRG.26961.1,blat.proc3829885.chain_107	2
scaffold_21	alt_acceptor	6507861	6507862	+	asmbl_28676	none	STRG.24158.2,blat.proc3829883.chain_1307	2	STRG.24158.1,STRG.24158.3,blat.proc3829883.chain_1306	3
scaffold_14	spliced_intron	150868	151276	-	asmbl_12758,asmbl_12759,asmbl_12760,asmbl_12761,asmbl_12762	none	STRG.16700.2,STRG.16700.3,Trinity_GG_26353_c0_g1_i1,Trinity_GG_26353_c0_g1_i4,blat.proc3829895.chain_1383,blat.proc3829895.chain_1384,blat.proc3829895.chain_1385,blat.proc3829895.chain_1386,blat.proc3829895.chain_1387	9	STRG.16700.4,STRG.16700.5,blat.proc3829895.chain_1388	3
scaffold_506	alt_donor	2749	2750	+	asmbl_46456	none	STRG.30329.2,blat.proc3829885.chain_3372	2	STRG.30329.1,blat.proc3829885.chain_3373,blat.proc3829885.chain_3374	3
scaffold_6	alt_acceptor	6026392	6026393	+	asmbl_46926,asmbl_46927	none	STRG.7547.1,STRG.7547.3,blat.proc3829873.chain_3639	3	STRG.7547.2	1
scaffold_573	starts_in_intron	3789	3789	-	asmbl_46549	none	STRG.30359.1,blat.proc3829901.chain_3415	2	STRG.30359.2	1
scaffold_21	ends_in_intron	1276025	1276025	-	asmbl_27425	none	Trinity_GG_30251_c3_g1_i1,blat.proc3829899.chain_836	2	STRG.23792.1,Trinity_GG_30251_c1_g1_i2,Trinity_GG_30251_c1_g1_i3,blat.proc3829899.chain_833,blat.proc3829899.chain_834	5
scaffold_16	retained_intron	3821260	3821374	-	asmbl_16174	none	STRG.19175.1,Trinity_GG_27778_c0_g1_i2,blat.proc3829897.chain_198	3	Trinity_GG_27778_c0_g1_i1,blat.proc3829897.chain_199	2
scaffold_13	retained_intron	222006	222122	+	asmbl_10433	none	blat.proc3829879.chain_98	1	STRG.15414.1,blat.proc3829879.chain_100,blat.proc3829879.chain_99	3
scaffold_16	spliced_intron	3563930	3564366	-	asmbl_16154	none	STRG.19157.2,blat.proc3829897.chain_189	2	STRG.19157.1,blat.proc3829897.chain_187,blat.proc3829897.chain_188	3
scaffold_8	alt_donor	5856572	5856573	+	asmbl_51899	none	STRG.9989.1,Trinity_GG_5569_c0_g1_i4,blat.proc3829875.chain_2502	3	STRG.9989.2,STRG.9989.3,STRG.9989.4,Trinity_GG_5569_c0_g1_i1,Trinity_GG_5569_c0_g1_i2,Trinity_GG_5569_c0_g1_i3,blat.proc3829875.chain_2499,blat.proc3829875.chain_2500,blat.proc3829875.chain_2501	9
scaffold_1	skipped_exon	5963866	5964377	+	asmbl_1796	none	STRG.396.3	1	STRG.396.1,STRG.396.2,blat.proc3829871.chain_454	3
scaffold_7	alt_donor	6042945	6042946	-	asmbl_49723	none	STRG.8899.5,Trinity_GG_22045_c0_g1_i5,blat.proc3829891.chain_1182	3	STRG.8899.2,STRG.8899.3,STRG.8899.4	3
scaffold_7	alt_acceptor	83570	83571	-	asmbl_49476	none	STRG.8578.1	1	STRG.8578.2	1
scaffold_5	retained_intron	17368979	17369287	-	asmbl_46177	none	STRG.6906.2,Trinity_GG_20872_c0_g1_i1,blat.proc3829889.chain_2923	3	STRG.6906.1,blat.proc3829889.chain_2922	2
scaffold_3	retained_intron	7708984	7709096	-	asmbl_38934	none	blat.proc3829887.chain_3176	1	STRG.3361.2,blat.proc3829887.chain_3171,blat.proc3829887.chain_3173,blat.proc3829887.chain_3174	4
scaffold_13	alt_donor	8749120	8749121	+	asmbl_11133	none	STRG.16134.2,blat.proc3829879.chain_837	2	STRG.16134.1,blat.proc3829879.chain_836	2
scaffold_19	ends_in_intron	3188346	3188346	-	asmbl_21298,asmbl_21300	none	STRG.21999.3,STRG.21999.4,blat.proc3829897.chain_2767	3	STRG.21999.1,blat.proc3829897.chain_2769,blat.proc3829897.chain_2770	3
scaffold_10	ends_in_intron	7668678	7668678	+	asmbl_4569,asmbl_4570,asmbl_4571	none	STRG.12546.3,blat.proc3829877.chain_1138,blat.proc3829877.chain_1139	3	STRG.12546.1,STRG.12546.2,blat.proc3829877.chain_1137	3
scaffold_23	retained_intron	8004144	8004189	+	asmbl_31048	none	Trinity_GG_14415_c0_g1_i1,Trinity_GG_14415_c0_g1_i2,blat.proc3829883.chain_2997	3	STRG.26093.3	1
scaffold_24	starts_in_intron	7286408	7286408	+	asmbl_32386	none	blat.proc3829883.chain_3654	1	blat.proc3829883.chain_3653	1
scaffold_4	spliced_intron	5648812	5648953	-	asmbl_41370	none	blat.proc3829889.chain_619	1	STRG.4469.1,Trinity_GG_19533_c1_g1_i2,blat.proc3829889.chain_615,blat.proc3829889.chain_617,blat.proc3829889.chain_618	5
scaffold_26	retained_intron	3562965	3563144	+	asmbl_35324,asmbl_35325	none	STRG.28018.5,Trinity_GG_15467_c0_g1_i5,blat.proc3829885.chain_1002,blat.proc3829885.chain_1004	4	STRG.28018.4,blat.proc3829885.chain_1003	2
scaffold_1	alt_acceptor	4270585	4270586	+	asmbl_1657,asmbl_1659	none	STRG.259.1,STRG.259.3,blat.proc3829871.chain_321	3	STRG.259.2	1
scaffold_4	starts_in_intron	10915358	10915358	-	asmbl_41613	none	STRG.4811.2,blat.proc3829889.chain_870	2	STRG.4811.1,blat.proc3829889.chain_871	2
scaffold_18	alternate_exon	7174485	7174633	-	asmbl_19961	none	STRG.21405.1,Trinity_GG_28995_c0_g1_i3,blat.proc3829897.chain_2259	3	STRG.21405.2,STRG.21405.3,Trinity_GG_28995_c0_g1_i5,blat.proc3829897.chain_2258	4
scaffold_28	starts_in_intron	4562694	4562694	-	asmbl_37538,asmbl_37539	none	STRG.29610.2,blat.proc3829901.chain_2725	2	STRG.29610.1,Trinity_GG_33600_c0_g1_i4,blat.proc3829901.chain_2726	3
scaffold_23	retained_exon	4100078	4100716	-	asmbl_31552	none	blat.proc3829899.chain_2934	1	STRG.25802.1,STRG.25802.4	2
scaffold_7	starts_in_intron	6903824	6903824	+	asmbl_50767	none	Trinity_GG_4932_c0_g1_i2,blat.proc3829875.chain_1368	2	STRG.8941.1,Trinity_GG_4932_c0_g1_i3,blat.proc3829875.chain_1367	3
scaffold_14	alternate_exon	14147913	14148583	+	asmbl_12513	none	STRG.17676.4	1	STRG.17676.3,STRG.17676.5	2
scaffold_2	alt_donor	13898137	13898138	-	asmbl_23547	none	Trinity_GG_18354_c4_g1_i1,blat.proc3829887.chain_2294	2	STRG.2382.1,STRG.2382.2,blat.proc3829887.chain_2287,blat.proc3829887.chain_2288,blat.proc3829887.chain_2289,blat.proc3829887.chain_2290	6
scaffold_10	ends_in_intron	3352489	3352489	-	asmbl_3108	none	Trinity_GG_23792_c0_g1_i1,blat.proc3829893.chain_614	2	STRG.12149.1,blat.proc3829893.chain_615	2
scaffold_13	spliced_intron	4457825	4458799	+	asmbl_10776,asmbl_10778,asmbl_10779,asmbl_10780,asmbl_10781	none	STRG.15755.3,STRG.15755.4,Trinity_GG_8663_c0_g1_i7,blat.proc3829879.chain_448,blat.proc3829879.chain_449,blat.proc3829879.chain_453	6	STRG.15755.2,Trinity_GG_8663_c0_g2_i2,blat.proc3829879.chain_450,blat.proc3829879.chain_455	4
scaffold_27	alt_acceptor	4153107	4153108	-	asmbl_36898	none	STRG.28853.1,blat.proc3829901.chain_2038	2	STRG.28853.2	1
scaffold_17	retained_intron	8845886	8846064	+	asmbl_18151,asmbl_18153,asmbl_18154	none	STRG.20483.2,Trinity_GG_11225_c0_g1_i6,blat.proc3829881.chain_1283,blat.proc3829881.chain_1285	4	STRG.20483.1,blat.proc3829881.chain_1284	2
scaffold_9	spliced_intron	6903754	6903877	-	asmbl_55049,asmbl_55050,asmbl_55052,asmbl_55053,asmbl_55054	none	STRG.11191.1,blat.proc3829891.chain_3366,blat.proc3829891.chain_3369,blat.proc3829891.chain_3370,blat.proc3829891.chain_3371,blat.proc3829891.chain_3372	6	STRG.11191.2,STRG.11191.3,STRG.11191.4,STRG.11191.5,blat.proc3829891.chain_3367,blat.proc3829891.chain_3368,blat.proc3829891.chain_3373,blat.proc3829891.chain_3374,blat.proc3829891.chain_3375	9
scaffold_4	retained_exon	19525666	19525696	-	asmbl_42196	none	STRG.5535.1,blat.proc3829889.chain_1553	2	blat.proc3829889.chain_1550,blat.proc3829889.chain_1551	2
scaffold_4	alt_donor	16639123	16639124	+	asmbl_43324	none	STRG.5243.2	1	STRG.5243.1	1
scaffold_20	ends_in_intron	10411456	10411456	+	asmbl_26117	none	STRG.23567.1,blat.proc3829883.chain_667	2	STRG.23567.2	1
scaffold_18	spliced_intron	13805940	13806190	+	asmbl_21054,asmbl_21055,asmbl_21056	none	STRG.21804.1,STRG.21804.2,Trinity_GG_12056_c0_g1_i2,Trinity_GG_12056_c0_g1_i3,blat.proc3829881.chain_2755,blat.proc3829881.chain_2757	6	blat.proc3829881.chain_2756,blat.proc3829881.chain_2758	2
scaffold_17	starts_in_intron	9489246	9489246	+	asmbl_18221	none	Trinity_GG_11244_c0_g1_i7,blat.proc3829881.chain_1325	2	STRG.20558.1,STRG.20558.2,STRG.20558.3,Trinity_GG_11244_c0_g1_i4,blat.proc3829881.chain_1326,blat.proc3829881.chain_1328,blat.proc3829881.chain_1329,blat.proc3829881.chain_1330,blat.proc3829881.chain_1331	9
scaffold_2	retained_intron	9886597	9886832	-	asmbl_23414,asmbl_23415	none	STRG.2191.1,blat.proc3829887.chain_2073,blat.proc3829887.chain_2074	3	blat.proc3829887.chain_2075	1
scaffold_3	retained_exon	14514078	14514365	-	asmbl_39332	none	STRG.3790.3,Trinity_GG_19112_c0_g1_i1,blat.proc3829887.chain_3597	3	STRG.3790.2	1
scaffold_10	ends_in_intron	10284632	10284632	-	asmbl_3618	none	Trinity_GG_24134_c1_g2_i1,blat.proc3829893.chain_1240	2	STRG.12709.2	1
scaffold_6	spliced_intron	18784543	18784568	-	asmbl_49215	none	STRG.8545.2	1	STRG.8545.1,Trinity_GG_21902_c0_g1_i1,blat.proc3829891.chain_887,blat.proc3829891.chain_889	4
scaffold_5	retained_intron	19440530	19440725	+	asmbl_44973	none	Trinity_GG_3857_c0_g1_i1,blat.proc3829873.chain_3161	2	STRG.7031.1,Trinity_GG_3857_c0_g1_i2,blat.proc3829873.chain_3162	3
scaffold_25	retained_intron	3615584	3615675	+	asmbl_33430	none	STRG.27288.2	1	STRG.27288.1	1
scaffold_14	alternate_exon	1604562	1604637	-	asmbl_12879	none	STRG.16790.2,Trinity_GG_26418_c0_g1_i3,blat.proc3829895.chain_1495	3	STRG.16790.1,Trinity_GG_26418_c0_g1_i1,Trinity_GG_26418_c0_g1_i5,blat.proc3829895.chain_1496,blat.proc3829895.chain_1497	5
scaffold_7	retained_exon	8302921	8302957	+	asmbl_50869	none	blat.proc3829875.chain_1485	1	STRG.9055.1,blat.proc3829875.chain_1486	2
scaffold_26	alternate_exon	5559506	5559642	+	asmbl_35553,asmbl_35554	none	STRG.28248.2,blat.proc3829885.chain_1208	2	STRG.28248.1	1
scaffold_20	starts_in_intron	10790203	10790203	-	asmbl_27042	none	blat.proc3829899.chain_591	1	STRG.23593.1,blat.proc3829899.chain_590	2
scaffold_14	retained_intron	15565904	15565930	+	asmbl_12609	none	STRG.17784.1	1	blat.proc3829879.chain_2468	1
scaffold_13	retained_intron	8715359	8715468	-	asmbl_9928	none	STRG.16126.1,blat.proc3829895.chain_863	2	STRG.16126.2,blat.proc3829895.chain_864	2
scaffold_3	ends_in_intron	11300151	11300151	+	asmbl_40296	none	blat.proc3829873.chain_1	1	STRG.3552.1,STRG.3552.2,blat.proc3829871.chain_3749,blat.proc3829871.chain_3750	4
scaffold_1	skipped_exon	3285767	3287204	+	asmbl_1586	none	STRG.204.3,blat.proc3829871.chain_253	2	blat.proc3829871.chain_252	1
scaffold_2	retained_intron	19140192	19140304	+	asmbl_25299	none	STRG.2781.1,Trinity_GG_1556_c0_g1_i2,blat.proc3829871.chain_2934	3	STRG.2781.2,blat.proc3829871.chain_2933	2
scaffold_5	alt_donor	3914517	3914518	+	asmbl_43919	none	STRG.5854.2	1	STRG.5854.1,blat.proc3829873.chain_2024	2
scaffold_14	starts_in_intron	7585046	7585046	-	asmbl_13215	none	Trinity_GG_26661_c0_g1_i2,blat.proc3829895.chain_1912	2	STRG.17194.2	1
scaffold_2	spliced_intron	13064806	13065021	+	asmbl_24845	none	STRG.2330.2,blat.proc3829871.chain_2457	2	STRG.2330.1,blat.proc3829871.chain_2456,blat.proc3829871.chain_2458,blat.proc3829871.chain_2461	4
scaffold_16	alternate_exon	4066673	4073315	+	asmbl_16955,asmbl_16958	none	STRG.19212.1,Trinity_GG_10492_c0_g1_i2,blat.proc3829881.chain_1,blat.proc3829881.chain_3	4	STRG.19212.2,blat.proc3829881.chain_2	2
scaffold_1	alt_acceptor	19841703	19841704	+	asmbl_2586	none	STRG.1362.1,STRG.1362.2,blat.proc3829871.chain_1396	3	STRG.1362.3,blat.proc3829871.chain_1397	2
scaffold_1	alt_donor	4027775	4027776	-	asmbl_179	none	STRG.243.1,blat.proc3829887.chain_109	2	STRG.243.2,blat.proc3829887.chain_110	2
scaffold_14	spliced_intron	1130983	1131079	-	asmbl_12841,asmbl_12842	none	STRG.16759.1,STRG.16759.2,Trinity_GG_26404_c0_g1_i2,Trinity_GG_26404_c0_g1_i3,blat.proc3829895.chain_1475,blat.proc3829895.chain_1476	6	Trinity_GG_26404_c0_g1_i1,blat.proc3829895.chain_1474	2
scaffold_11	alt_acceptor	788017	788018	+	asmbl_5258	none	STRG.13265.1,blat.proc3829877.chain_1784	2	STRG.13265.2,blat.proc3829877.chain_1785	2
scaffold_4	alt_donor	13195139	13195140	-	asmbl_41728	none	STRG.4959.2,blat.proc3829889.chain_1014	2	STRG.4959.1,STRG.4959.3,blat.proc3829889.chain_1015,blat.proc3829889.chain_1016	4
scaffold_6	spliced_intron	7936991	7937111	-	asmbl_48445,asmbl_48446,asmbl_48448,asmbl_48449,asmbl_48451,asmbl_48453	none	STRG.7666.1,STRG.7666.2,STRG.7666.4,blat.proc3829889.chain_3701,blat.proc3829889.chain_3702,blat.proc3829889.chain_3704,blat.proc3829889.chain_3705	7	blat.proc3829889.chain_3703,blat.proc3829889.chain_3706	2
scaffold_11	alt_acceptor	12679008	12679009	-	asmbl_7076	none	STRG.14150.1	1	STRG.14150.2	1
scaffold_16	ends_in_intron	8586500	8586500	+	asmbl_17208,asmbl_17220	none	STRG.19477.4,Trinity_GG_10676_c0_g1_i5,blat.proc3829881.chain_358	3	STRG.19477.1,STRG.19477.2,STRG.19477.3,STRG.19477.5,STRG.19477.6,STRG.19477.7,STRG.19477.8,blat.proc3829881.chain_353,blat.proc3829881.chain_354,blat.proc3829881.chain_355,blat.proc3829881.chain_357,blat.proc3829881.chain_359	12
scaffold_14	alternate_exon	11649068	11649100	-	asmbl_13496	none	blat.proc3829895.chain_2213	1	STRG.17488.1,blat.proc3829895.chain_2212	2
scaffold_22	alt_donor	6064516	6064517	+	asmbl_29384	none	blat.proc3829883.chain_2020	1	blat.proc3829883.chain_2021	1
scaffold_19	retained_exon	13749588	13749644	+	asmbl_22696	none	STRG.22678.2	1	STRG.22678.1,blat.proc3829881.chain_3609	2
scaffold_23	starts_in_intron	1417282	1417282	-	asmbl_31362	none	blat.proc3829899.chain_2608	1	STRG.25595.1	1
scaffold_5	alternate_exon	9106416	9106587	+	asmbl_44277	none	STRG.6245.2	1	STRG.6245.1	1
scaffold_11	ends_in_intron	8142568	8142568	-	asmbl_6829	none	Trinity_GG_24717_c1_g1_i2,blat.proc3829893.chain_2222	2	STRG.13815.5,Trinity_GG_24717_c1_g1_i1,blat.proc3829893.chain_2221	3
scaffold_2	ends_in_intron	16275034	16275034	+	asmbl_25129	none	blat.proc3829871.chain_2779	1	STRG.2564.1,STRG.2564.3,blat.proc3829871.chain_2777,blat.proc3829871.chain_2780,blat.proc3829871.chain_2781,blat.proc3829871.chain_2783,blat.proc3829871.chain_2784,blat.proc3829871.chain_2785	8
scaffold_25	alt_donor	9429086	9429087	+	asmbl_33805	none	STRG.27738.2	1	STRG.27738.1,Trinity_GG_15317_c0_g1_i2,blat.proc3829885.chain_781	3
scaffold_10	starts_in_intron	11869560	11869560	-	asmbl_3695	none	STRG.12813.1,blat.proc3829893.chain_1314	2	STRG.12813.3	1
scaffold_25	retained_intron	4811129	4811361	+	asmbl_33531	none	Trinity_GG_15078_c0_g1_i7,blat.proc3829885.chain_378	2	STRG.27400.1,STRG.27400.2,Trinity_GG_15078_c0_g1_i1,Trinity_GG_15078_c0_g1_i5,Trinity_GG_15078_c0_g1_i6,blat.proc3829885.chain_375,blat.proc3829885.chain_376,blat.proc3829885.chain_377	8
scaffold_13	spliced_intron	5804903	5805414	+	asmbl_10879,asmbl_10880,asmbl_10881,asmbl_10886	none	STRG.15880.1,STRG.15880.2,STRG.15880.3,blat.proc3829879.chain_648,blat.proc3829879.chain_649	5	blat.proc3829879.chain_647	1
scaffold_12	retained_intron	14123567	14123697	-	asmbl_8117,asmbl_8118,asmbl_8121	none	STRG.15232.2,Trinity_GG_25557_c0_g1_i2,blat.proc3829893.chain_3706	3	STRG.15232.1,blat.proc3829893.chain_3707,blat.proc3829893.chain_3709	3
scaffold_28	retained_intron	5014513	5014754	+	asmbl_38254	none	Trinity_GG_16433_c0_g2_i1,blat.proc3829885.chain_2756	2	STRG.29628.3,Trinity_GG_16433_c0_g2_i4,blat.proc3829885.chain_2755	3
scaffold_8	alt_donor	18250057	18250058	-	asmbl_53533,asmbl_53535,asmbl_53537,asmbl_53540	none	STRG.10723.3,STRG.10723.4,blat.proc3829891.chain_2921,blat.proc3829891.chain_2923	4	STRG.10723.1,STRG.10723.2,STRG.10723.5,blat.proc3829891.chain_2919,blat.proc3829891.chain_2922,blat.proc3829891.chain_2924,blat.proc3829891.chain_2925	7
scaffold_8	alternate_exon	3482636	3486590	+	asmbl_51758,asmbl_51759	none	STRG.9839.1,blat.proc3829875.chain_2330,blat.proc3829875.chain_2331	3	STRG.9839.2,STRG.9839.3	2
scaffold_3	spliced_intron	12773155	12773414	+	asmbl_40370	none	STRG.3666.2,Trinity_GG_2047_c0_g1_i3,blat.proc3829873.chain_50	3	STRG.3666.1,Trinity_GG_2047_c0_g1_i2,blat.proc3829873.chain_48	3
scaffold_23	alt_acceptor	362285	362286	-	asmbl_31315,asmbl_31320	none	STRG.25543.3,blat.proc3829899.chain_2656	2	blat.proc3829899.chain_2649	1
scaffold_5	ends_in_intron	4848964	4848964	+	asmbl_43970	none	blat.proc3829873.chain_2078	1	blat.proc3829873.chain_2079	1
scaffold_22	alt_donor	11522903	11522904	+	asmbl_29690	none	STRG.25480.2,blat.proc3829883.chain_2357	2	STRG.25480.1,Trinity_GG_14036_c1_g1_i1,blat.proc3829883.chain_2358	3
scaffold_21	retained_exon	7727561	7727721	+	asmbl_28779	none	STRG.24301.2,blat.proc3829883.chain_1449	2	STRG.24301.1	1
scaffold_19	skipped_exon	9453805	9454559	+	asmbl_22397,asmbl_22398	none	STRG.22365.2,STRG.22365.3,blat.proc3829881.chain_3308	3	STRG.22365.1,blat.proc3829881.chain_3306	2
scaffold_21	ends_in_intron	9926639	9926639	-	asmbl_28016	none	blat.proc3829899.chain_1512	1	STRG.24446.1,STRG.24446.4,STRG.24446.5,STRG.24446.6,blat.proc3829899.chain_1513	5
scaffold_11	alt_acceptor	6396023	6396024	-	asmbl_6682,asmbl_6683	none	STRG.13685.1,STRG.13685.2,Trinity_GG_24659_c0_g1_i2,Trinity_GG_24659_c0_g1_i3,blat.proc3829893.chain_2111,blat.proc3829893.chain_2113	6	STRG.13685.3,STRG.13685.4	2
scaffold_2	alt_donor	13077769	13077770	-	asmbl_23504,asmbl_23506,asmbl_23507,asmbl_23508,asmbl_23509	none	STRG.2340.2,STRG.2340.3,blat.proc3829887.chain_2257,blat.proc3829887.chain_2258,blat.proc3829887.chain_2259,blat.proc3829887.chain_2260	6	STRG.2340.1,blat.proc3829887.chain_2255,blat.proc3829887.chain_2256,blat.proc3829887.chain_2262	4
scaffold_18	ends_in_intron	4573909	4573909	+	asmbl_20557	none	blat.proc3829881.chain_2150	1	STRG.21237.1,STRG.21237.2,blat.proc3829881.chain_2149,blat.proc3829881.chain_2151,blat.proc3829881.chain_2152,blat.proc3829881.chain_2153,blat.proc3829881.chain_2154	7
scaffold_13	alt_donor	521688	521689	+	asmbl_10453	none	Trinity_GG_8491_c0_g1_i4,blat.proc3829879.chain_112	2	STRG.15434.1,STRG.15434.2,STRG.15434.3,STRG.15434.4,STRG.15434.5,Trinity_GG_8491_c0_g1_i1,blat.proc3829879.chain_110,blat.proc3829879.chain_111,blat.proc3829879.chain_114,blat.proc3829879.chain_115,blat.proc3829879.chain_116	11
scaffold_26	skipped_exon	5647284	5649356	-	asmbl_34886	none	STRG.28255.3,blat.proc3829901.chain_1437	2	STRG.28255.1,STRG.28255.2,blat.proc3829901.chain_1436,blat.proc3829901.chain_1438,blat.proc3829901.chain_1441,blat.proc3829901.chain_1442,blat.proc3829901.chain_1443	7
scaffold_23	spliced_intron	1992483	1992563	+	asmbl_30671	none	STRG.25643.1,blat.proc3829883.chain_2553	2	STRG.25643.2	1
scaffold_6	alt_donor	13176498	13176499	+	asmbl_47416	none	STRG.8069.3,blat.proc3829875.chain_486	2	STRG.8069.1,STRG.8069.2,blat.proc3829875.chain_487,blat.proc3829875.chain_488	4
scaffold_13	alt_donor	8268589	8268590	+	asmbl_11098	none	STRG.16102.2	1	STRG.16102.1,blat.proc3829879.chain_855	2
scaffold_26	alt_acceptor	6319317	6319318	-	asmbl_34945	none	STRG.28312.2	1	STRG.28312.1,STRG.28312.3,blat.proc3829901.chain_1454,blat.proc3829901.chain_1455	4
scaffold_19	spliced_intron	12958865	12958948	-	asmbl_21775,asmbl_21779	none	STRG.22600.1,Trinity_GG_29572_c0_g1_i7,blat.proc3829897.chain_3292	3	Trinity_GG_29572_c0_g1_i6,blat.proc3829897.chain_3295	2
scaffold_24	starts_in_intron	9082176	9082176	+	asmbl_32496	none	Trinity_GG_14897_c0_g2_i1,blat.proc3829885.chain_79	2	STRG.26929.2,Trinity_GG_14897_c0_g1_i2,blat.proc3829885.chain_72,blat.proc3829885.chain_74	4
scaffold_22	starts_in_intron	9949106	9949106	+	asmbl_29618	none	Trinity_GG_14011_c0_g1_i3,blat.proc3829883.chain_2316	2	STRG.25321.1	1
scaffold_21	alt_acceptor	10972981	10972982	+	asmbl_28913	none	STRG.24558.1	1	STRG.24558.2	1
scaffold_28	retained_intron	294106	294231	+	asmbl_37962	none	STRG.29243.3,blat.proc3829885.chain_2401	2	STRG.29243.2,blat.proc3829885.chain_2398	2
scaffold_7	retained_intron	13960665	13960867	+	asmbl_51276,asmbl_51277	none	STRG.9485.3,Trinity_GG_5272_c0_g1_i2,blat.proc3829875.chain_1952	3	STRG.9485.1,STRG.9485.2,Trinity_GG_5272_c0_g1_i1,blat.proc3829875.chain_1951	4
scaffold_2	spliced_intron	7895023	7895182	+	asmbl_24625,asmbl_24626,asmbl_24627,asmbl_24628,asmbl_24633	none	STRG.2086.1,STRG.2086.2,STRG.2086.3,blat.proc3829871.chain_2189,blat.proc3829871.chain_2191,blat.proc3829871.chain_2193,blat.proc3829871.chain_2194,blat.proc3829871.chain_2195,blat.proc3829871.chain_2196,blat.proc3829871.chain_2199	10	Trinity_GG_1187_c0_g1_i12,blat.proc3829871.chain_2190	2
scaffold_7	retained_intron	5915073	5915159	-	asmbl_49712	none	STRG.8887.4,Trinity_GG_22041_c0_g1_i8,blat.proc3829891.chain_1169	3	STRG.8887.1,STRG.8887.2,STRG.8887.3,STRG.8887.5,blat.proc3829891.chain_1163,blat.proc3829891.chain_1164,blat.proc3829891.chain_1165,blat.proc3829891.chain_1167,blat.proc3829891.chain_1168	9
scaffold_15	spliced_intron	13944525	13944639	-	asmbl_15700,asmbl_15703	none	STRG.18816.4,blat.proc3829895.chain_3544,blat.proc3829895.chain_3546	3	STRG.18816.1,blat.proc3829895.chain_3542,blat.proc3829895.chain_3545	3
scaffold_2	retained_intron	8299359	8300642	+	asmbl_24661,asmbl_24664	none	STRG.2116.3,blat.proc3829871.chain_2250	2	STRG.2116.1,STRG.2116.2,STRG.2116.4,blat.proc3829871.chain_2248,blat.proc3829871.chain_2249	5
scaffold_7	starts_in_intron	12841112	12841112	-	asmbl_50083	none	STRG.9389.3,blat.proc3829891.chain_1502	2	STRG.9389.2,STRG.9389.4,blat.proc3829891.chain_1501,blat.proc3829891.chain_1503	4
scaffold_1	starts_in_intron	14265805	14265805	+	asmbl_2339	none	Trinity_GG_604_c0_g1_i1,blat.proc3829871.chain_1077	2	STRG.1013.1,blat.proc3829871.chain_1076	2
scaffold_18	spliced_intron	9804343	9804380	-	asmbl_20123	none	STRG.21582.3	1	STRG.21582.1,STRG.21582.2,Trinity_GG_29051_c2_g1_i1	3
scaffold_17	alt_donor	11567861	11567862	+	asmbl_18359	none	STRG.20693.3,Trinity_GG_11317_c0_g1_i1	2	STRG.20693.1,STRG.20693.2,STRG.20693.4	3
scaffold_12	ends_in_intron	10516522	10516522	-	asmbl_7887	none	blat.proc3829893.chain_3396	1	STRG.15004.1,blat.proc3829893.chain_3398	2
scaffold_19	starts_in_intron	5397131	5397131	-	asmbl_21366	none	blat.proc3829897.chain_2831	1	STRG.22094.1,Trinity_GG_29328_c0_g1_i1,blat.proc3829897.chain_2832	3
scaffold_2	retained_intron	8055440	8055626	-	asmbl_23325	none	STRG.2095.5,blat.proc3829887.chain_2007	2	STRG.2095.2,blat.proc3829887.chain_2005,blat.proc3829887.chain_2009	3
scaffold_11	alt_acceptor	8984397	8984398	-	asmbl_6883	none	STRG.13910.2	1	STRG.13910.1,blat.proc3829893.chain_2347	2
scaffold_16	skipped_exon	10447527	10449544	+	asmbl_17338	none	STRG.19602.4	1	STRG.19602.2,STRG.19602.5	2
scaffold_10	retained_intron	9555421	9557098	+	asmbl_4682	none	STRG.12692.5	1	STRG.12692.2,STRG.12692.4,blat.proc3829877.chain_1283	3
scaffold_15	retained_exon	6957427	6957668	-	asmbl_15288	none	STRG.18291.3,blat.proc3829895.chain_3054	2	STRG.18291.4	1
scaffold_5	starts_in_intron	15703465	15703465	+	asmbl_44675	none	blat.proc3829873.chain_2832	1	STRG.6756.1,STRG.6756.2,STRG.6756.3,blat.proc3829873.chain_2831	4
scaffold_10	alternate_exon	16531312	16531387	+	asmbl_4993,asmbl_4996	none	STRG.13112.2,blat.proc3829877.chain_1620	2	STRG.13112.1,blat.proc3829877.chain_1619,blat.proc3829877.chain_1621,blat.proc3829877.chain_1622	4
scaffold_1	spliced_intron	10414454	10414944	-	asmbl_592	none	STRG.680.1,blat.proc3829887.chain_609	2	Trinity_GG_17393_c0_g2_i1,blat.proc3829887.chain_610	2
scaffold_21	skipped_exon	6512144	6512971	+	asmbl_28680	none	blat.proc3829883.chain_1337	1	STRG.24161.1,blat.proc3829883.chain_1336	2
scaffold_10	alt_acceptor	7668132	7668133	+	asmbl_4571	none	STRG.12546.3	1	STRG.12546.1,STRG.12546.2,blat.proc3829877.chain_1137,blat.proc3829877.chain_1138,blat.proc3829877.chain_1139	5
scaffold_23	retained_intron	1514785	1514962	-	asmbl_31373	none	blat.proc3829899.chain_2714	1	STRG.25610.1,blat.proc3829899.chain_2715	2
scaffold_19	starts_in_intron	12430966	12430966	+	asmbl_22606	none	Trinity_GG_12480_c1_g1_i1,blat.proc3829881.chain_3523	2	STRG.22558.1,blat.proc3829881.chain_3515,blat.proc3829881.chain_3516,blat.proc3829881.chain_3517,blat.proc3829881.chain_3518,blat.proc3829881.chain_3519,blat.proc3829881.chain_3520	7
scaffold_17	retained_intron	10050378	10050855	+	asmbl_18287,asmbl_18288,asmbl_18289	none	STRG.20609.2,Trinity_GG_11293_c0_g1_i5,blat.proc3829881.chain_1429,blat.proc3829881.chain_1430,blat.proc3829881.chain_1432	5	STRG.20609.1,blat.proc3829881.chain_1431	2
scaffold_26	ends_in_intron	3082397	3082397	+	asmbl_35296	none	blat.proc3829885.chain_948	1	STRG.27981.1,STRG.27981.2,blat.proc3829885.chain_949	3
scaffold_11	alt_donor	10268776	10268777	-	asmbl_6969,asmbl_6970	none	STRG.14022.2,blat.proc3829893.chain_2382,blat.proc3829893.chain_2384	3	STRG.14022.1,STRG.14022.3,blat.proc3829893.chain_2381,blat.proc3829893.chain_2383	4
scaffold_3180	alt_acceptor	410	411	-	asmbl_40892	none	blat.proc3829885.chain_3646	1	blat.proc3829883.chain_3255	1
scaffold_9	alt_acceptor	6941763	6941764	+	asmbl_54100	none	STRG.11193.2	1	STRG.11193.1,blat.proc3829875.chain_3624	2
scaffold_21	ends_in_intron	8228754	8228754	-	asmbl_27925	none	STRG.24344.4	1	STRG.24344.1,STRG.24344.2,blat.proc3829899.chain_1446	3
scaffold_24	ends_in_intron	10487046	10487046	+	asmbl_32578,asmbl_32580	none	STRG.27000.3,Trinity_GG_14920_c0_g1_i7,blat.proc3829885.chain_130	3	STRG.27000.1,STRG.27000.2,STRG.27000.4,STRG.27000.5,Trinity_GG_14920_c0_g1_i2,Trinity_GG_14920_c0_g1_i4,Trinity_GG_14920_c0_g1_i5,Trinity_GG_14920_c0_g1_i6,blat.proc3829885.chain_126,blat.proc3829885.chain_127,blat.proc3829885.chain_128,blat.proc3829885.chain_129	12
scaffold_10	starts_in_intron	2663667	2663667	-	asmbl_3029	none	blat.proc3829893.chain_500	1	STRG.12072.1,blat.proc3829893.chain_501	2
scaffold_17	starts_in_intron	11348030	11348030	-	asmbl_19328	none	blat.proc3829897.chain_1619	1	blat.proc3829897.chain_1620	1
scaffold_4	starts_in_intron	5032925	5032925	-	asmbl_41289	none	blat.proc3829889.chain_528	1	STRG.4398.1,STRG.4398.2	2
scaffold_1	alt_donor	14352457	14352458	-	asmbl_900	none	STRG.1030.2,blat.proc3829887.chain_924	2	STRG.1030.1,blat.proc3829887.chain_925,blat.proc3829887.chain_927	3
scaffold_2	alt_acceptor	1597961	1597962	+	asmbl_24233,asmbl_24235	none	STRG.1628.1,blat.proc3829871.chain_1668,blat.proc3829871.chain_1669	3	blat.proc3829871.chain_1666	1
scaffold_22	alt_acceptor	7671307	7671308	-	asmbl_30183	none	STRG.25097.1,blat.proc3829899.chain_2190	2	STRG.25097.2	1
scaffold_21	alternate_exon	1174350	1175433	-	asmbl_27413	none	STRG.23778.2,Trinity_GG_30262_c0_g1_i3,blat.proc3829899.chain_857	3	STRG.23778.4,blat.proc3829899.chain_855	2
scaffold_6	alt_acceptor	10365796	10365797	-	asmbl_48624	none	STRG.7865.2	1	STRG.7865.1,blat.proc3829891.chain_129	2
scaffold_8	alternate_exon	1128524	1128924	+	asmbl_51674	none	STRG.9742.2	1	STRG.9742.1,STRG.9742.3	2
scaffold_26	spliced_intron	5891547	5891797	+	asmbl_35578,asmbl_35580	none	STRG.28280.1,blat.proc3829885.chain_1312,blat.proc3829885.chain_1314	3	STRG.28280.3,blat.proc3829885.chain_1313	2
scaffold_14	spliced_intron	1178420	1178543	+	asmbl_11787	none	STRG.16762.1,Trinity_GG_9223_c0_g1_i3,blat.proc3829879.chain_1486	3	STRG.16762.2,Trinity_GG_9223_c0_g1_i4,blat.proc3829879.chain_1485	3
scaffold_13	alt_donor	381912	381913	-	asmbl_9292	none	STRG.15421.4,blat.proc3829895.chain_150	2	STRG.15421.1,STRG.15421.3,blat.proc3829895.chain_149	3
scaffold_14	alternate_exon	11755888	11756695	+	asmbl_12382	none	STRG.17516.2,blat.proc3829879.chain_2186	2	STRG.17516.1,blat.proc3829879.chain_2185	2
scaffold_6	retained_intron	18911268	18911384	-	asmbl_49219,asmbl_49221	none	STRG.8552.1,blat.proc3829891.chain_883,blat.proc3829891.chain_884	3	STRG.8552.2	1
scaffold_5	starts_in_intron	4723297	4723297	+	asmbl_43959	none	blat.proc3829873.chain_2090	1	STRG.5920.1,blat.proc3829873.chain_2092	2
scaffold_19	retained_intron	13029049	13029345	-	asmbl_21805	none	Trinity_GG_29611_c1_g1_i2,blat.proc3829897.chain_3394	2	STRG.22614.1,STRG.22614.3,Trinity_GG_29611_c1_g1_i1,blat.proc3829897.chain_3395	4
scaffold_24	starts_in_intron	1232255	1232255	-	asmbl_32711	none	blat.proc3829899.chain_3339	1	blat.proc3829899.chain_3336	1
scaffold_18	alt_acceptor	7947579	7947580	-	asmbl_20029	none	STRG.21484.4	1	STRG.21484.1,STRG.21484.2,STRG.21484.3,blat.proc3829897.chain_2317,blat.proc3829897.chain_2318,blat.proc3829897.chain_2319	6
scaffold_1	starts_in_intron	11455233	11455233	-	asmbl_629	none	blat.proc3829887.chain_653	1	STRG.757.1,blat.proc3829887.chain_651	2
scaffold_2	spliced_intron	9191502	9191609	-	asmbl_23377,asmbl_23378,asmbl_23380,asmbl_23381,asmbl_23382	none	STRG.2167.1,STRG.2167.2,Trinity_GG_18242_c0_g1_i1,Trinity_GG_18242_c0_g1_i2,Trinity_GG_18242_c0_g1_i3,Trinity_GG_18242_c0_g1_i4,Trinity_GG_18242_c0_g1_i7,blat.proc3829887.chain_2099,blat.proc3829887.chain_2100,blat.proc3829887.chain_2101,blat.proc3829887.chain_2102,blat.proc3829887.chain_2104	12	Trinity_GG_18242_c0_g1_i12,blat.proc3829887.chain_2103	2
scaffold_11	spliced_intron	4745326	4745491	-	asmbl_6598,asmbl_6599,asmbl_6601,asmbl_6602,asmbl_6603	none	STRG.13555.1,STRG.13555.2,blat.proc3829893.chain_2035,blat.proc3829893.chain_2036,blat.proc3829893.chain_2038,blat.proc3829893.chain_2039,blat.proc3829893.chain_2040	7	blat.proc3829893.chain_2037	1
scaffold_5	spliced_intron	15504736	15505054	-	asmbl_46064	none	STRG.6731.2	1	STRG.6731.1,STRG.6731.3,blat.proc3829889.chain_2802,blat.proc3829889.chain_2803	4
scaffold_9	skipped_exon	4898501	4899242	+	asmbl_53949	none	STRG.11053.1	1	STRG.11053.2,blat.proc3829875.chain_3518	2
scaffold_1	spliced_intron	13130586	13130726	-	asmbl_803	none	STRG.951.1,blat.proc3829887.chain_830	2	blat.proc3829887.chain_829	1
scaffold_21	alt_acceptor	1061974	1061975	+	asmbl_28346,asmbl_28348	none	STRG.23771.2,STRG.23771.4	2	STRG.23771.1,STRG.23771.3,Trinity_GG_13124_c0_g1_i5,blat.proc3829883.chain_848,blat.proc3829883.chain_849	5
scaffold_7	starts_in_intron	4184051	4184051	+	asmbl_50601	none	Trinity_GG_4813_c0_g1_i1,blat.proc3829875.chain_1172	2	STRG.8807.1,STRG.8807.2,STRG.8807.3,blat.proc3829875.chain_1170,blat.proc3829875.chain_1171,blat.proc3829875.chain_1173	6
scaffold_4	ends_in_intron	177178	177178	-	asmbl_41055	none	Trinity_GG_19303_c0_g2_i1,blat.proc3829889.chain_222	2	STRG.4114.1,Trinity_GG_19303_c0_g1_i1,blat.proc3829889.chain_220	3
scaffold_25	spliced_intron	9450215	9450348	+	asmbl_33807,asmbl_33808	none	STRG.27744.1,STRG.27744.2,blat.proc3829885.chain_731,blat.proc3829885.chain_734	4	blat.proc3829885.chain_732	1
scaffold_17	alt_acceptor	6798441	6798442	+	asmbl_18002	none	STRG.20322.2,blat.proc3829881.chain_1107	2	STRG.20322.1,blat.proc3829881.chain_1106	2
scaffold_28	ends_in_intron	2808771	2808771	-	asmbl_37414	none	blat.proc3829901.chain_2497	1	STRG.29459.1,blat.proc3829901.chain_2491,blat.proc3829901.chain_2492,blat.proc3829901.chain_2493,blat.proc3829901.chain_2494,blat.proc3829901.chain_2495,blat.proc3829901.chain_2496	7
scaffold_13	ends_in_intron	5460358	5460358	+	asmbl_10832	none	blat.proc3829879.chain_522	1	STRG.15828.1,STRG.15828.2,blat.proc3829879.chain_518,blat.proc3829879.chain_519,blat.proc3829879.chain_520,blat.proc3829879.chain_521	6
scaffold_23	alternate_exon	9467676	9470953	-	asmbl_31812	none	STRG.26148.1,blat.proc3829899.chain_3234	2	blat.proc3829899.chain_3236	1
scaffold_1	spliced_intron	20338943	20339721	+	asmbl_2614	none	blat.proc3829871.chain_1453	1	STRG.1398.2,STRG.1398.3,STRG.1398.6,Trinity_GG_815_c2_g1_i8,blat.proc3829871.chain_1445,blat.proc3829871.chain_1446,blat.proc3829871.chain_1450	7
scaffold_17	spliced_intron	11508780	11509171	+	asmbl_18351	none	STRG.20683.1,blat.proc3829881.chain_1500	2	Trinity_GG_11332_c1_g1_i1,blat.proc3829881.chain_1501	2
scaffold_13	alt_donor	3355544	3355545	-	asmbl_9495,asmbl_9496	none	STRG.15631.1,blat.proc3829895.chain_389,blat.proc3829895.chain_390	3	STRG.15631.2	1
scaffold_5	starts_in_intron	6564689	6564689	+	asmbl_44095,asmbl_44101	none	STRG.6047.3,Trinity_GG_3293_c1_g1_i1,blat.proc3829873.chain_2182	3	STRG.6047.2	1
scaffold_5	starts_in_intron	15487023	15487023	+	asmbl_44659	none	Trinity_GG_3680_c0_g1_i3,blat.proc3829873.chain_2853	2	STRG.6727.3	1
scaffold_13	spliced_intron	6431003	6431154	-	asmbl_9752,asmbl_9753	none	STRG.15922.1,blat.proc3829895.chain_710	2	STRG.15922.2,Trinity_GG_25979_c0_g1_i11,Trinity_GG_25979_c0_g1_i4,blat.proc3829895.chain_708,blat.proc3829895.chain_712,blat.proc3829895.chain_713,blat.proc3829895.chain_714,blat.proc3829895.chain_715,blat.proc3829895.chain_716	9
scaffold_21	starts_in_intron	8317001	8317001	-	asmbl_27943	none	blat.proc3829899.chain_1418	1	STRG.24360.1,blat.proc3829899.chain_1417	2
scaffold_10	starts_in_intron	379960	379960	-	asmbl_2866	none	STRG.11913.5	1	STRG.11913.1,STRG.11913.2,STRG.11913.3,STRG.11913.4,Trinity_GG_23607_c0_g1_i1,Trinity_GG_23607_c0_g1_i5,blat.proc3829893.chain_302,blat.proc3829893.chain_304,blat.proc3829893.chain_306	9
scaffold_28	alt_acceptor	3742821	3742822	-	asmbl_37488,asmbl_37490	none	STRG.29558.1,STRG.29558.2,blat.proc3829901.chain_2662	3	blat.proc3829901.chain_2661	1
scaffold_2	alt_donor	10586836	10586837	+	asmbl_24741	none	STRG.2216.1,blat.proc3829871.chain_2313	2	blat.proc3829871.chain_2312	1
scaffold_1	spliced_intron	14251914	14252304	-	asmbl_883	none	STRG.1012.2	1	STRG.1012.1,blat.proc3829887.chain_870	2
scaffold_10	ends_in_intron	9059903	9059903	-	asmbl_3577	none	blat.proc3829893.chain_1162	1	STRG.12643.1,STRG.12643.2,blat.proc3829893.chain_1164,blat.proc3829893.chain_1166,blat.proc3829893.chain_1168,blat.proc3829893.chain_1169	6
scaffold_15	spliced_intron	4117643	4117724	-	asmbl_15135	none	STRG.18141.4	1	STRG.18141.1,STRG.18141.3,Trinity_GG_27184_c0_g1_i1,blat.proc3829895.chain_2828	4
scaffold_15	ends_in_intron	9817330	9817330	+	asmbl_14360	none	blat.proc3829879.chain_3043	1	STRG.18487.1,STRG.18487.2,blat.proc3829879.chain_3044,blat.proc3829879.chain_3046,blat.proc3829879.chain_3047	5
scaffold_21	alternate_exon	694235	694384	+	asmbl_28305	none	STRG.23742.2	1	STRG.23742.3,Trinity_GG_13161_c0_g1_i1	2
scaffold_1	starts_in_intron	15880536	15880536	+	asmbl_2432	none	Trinity_GG_675_c0_g2_i1,blat.proc3829871.chain_1213	2	STRG.1112.1,Trinity_GG_675_c0_g1_i1,blat.proc3829871.chain_1212	3
scaffold_6	starts_in_intron	16620909	16620909	-	asmbl_49084	none	STRG.8381.2,blat.proc3829891.chain_701	2	STRG.8381.1,STRG.8381.3,blat.proc3829891.chain_700,blat.proc3829891.chain_702	4
scaffold_15	ends_in_intron	9868960	9868960	+	asmbl_14367	none	STRG.18515.2,blat.proc3829879.chain_3067	2	STRG.18515.1,blat.proc3829879.chain_3062	2
scaffold_8	spliced_intron	11952271	11952696	+	asmbl_52289	none	STRG.10389.1	1	Trinity_GG_5776_c0_g1_i4,blat.proc3829875.chain_2888	2
scaffold_25	alternate_exon	2089900	2097721	-	asmbl_34046	none	STRG.27196.1	1	STRG.27196.2,blat.proc3829901.chain_540	2
scaffold_28	skipped_exon	1410352	1411350	+	asmbl_38000	none	STRG.29317.2	1	STRG.29317.1,blat.proc3829885.chain_2366	2
scaffold_26	starts_in_intron	4834412	4834412	+	asmbl_35460	none	Trinity_GG_15536_c0_g1_i2,blat.proc3829885.chain_1113	2	STRG.28185.1	1
scaffold_19	alt_acceptor	7584732	7584733	+	asmbl_22283	none	blat.proc3829881.chain_3174	1	STRG.22230.1,STRG.22230.2,Trinity_GG_12292_c1_g1_i2,blat.proc3829881.chain_3168,blat.proc3829881.chain_3171,blat.proc3829881.chain_3173,blat.proc3829881.chain_3175	7
scaffold_11	starts_in_intron	9513938	9513938	-	asmbl_6920	none	STRG.13968.1,blat.proc3829893.chain_2387	2	STRG.13968.2,Trinity_GG_24814_c0_g1_i1,blat.proc3829893.chain_2388	3
scaffold_14	ends_in_intron	6371186	6371186	+	asmbl_12050	none	blat.proc3829879.chain_1818	1	STRG.17069.1,STRG.17069.2,blat.proc3829879.chain_1816,blat.proc3829879.chain_1817	4
scaffold_3	ends_in_intron	11299196	11299196	+	asmbl_40294	none	Trinity_GG_2021_c0_g1_i1,blat.proc3829871.chain_3748	2	STRG.3552.2,blat.proc3829871.chain_3750	2
scaffold_14	alt_donor	2464869	2464870	-	asmbl_12935,asmbl_12937	none	STRG.16842.2,STRG.16842.4	2	STRG.16842.1,blat.proc3829895.chain_1549	2
scaffold_2	retained_exon	9190285	9190308	-	asmbl_23378,asmbl_23379,asmbl_23381	none	STRG.2167.1,Trinity_GG_18242_c0_g1_i12,Trinity_GG_18242_c0_g1_i2,Trinity_GG_18242_c0_g1_i4,blat.proc3829887.chain_2101,blat.proc3829887.chain_2102,blat.proc3829887.chain_2103	7	STRG.2167.2,Trinity_GG_18242_c0_g1_i1,Trinity_GG_18242_c0_g1_i3,blat.proc3829887.chain_2099,blat.proc3829887.chain_2100	5
scaffold_8	retained_exon	17973918	17974029	-	asmbl_53508	none	STRG.10695.2	1	STRG.10695.1,Trinity_GG_22958_c0_g1_i1,blat.proc3829891.chain_2852	3
scaffold_1	retained_intron	13100329	13100568	-	asmbl_799	none	STRG.941.1,blat.proc3829887.chain_825	2	blat.proc3829887.chain_824	1
scaffold_17	alt_acceptor	9089407	9089408	-	asmbl_19197	none	STRG.20530.1	1	STRG.20530.2,STRG.20530.3,blat.proc3829897.chain_1482,blat.proc3829897.chain_1483	4
scaffold_1	alt_acceptor	5769922	5769923	+	asmbl_1785	none	STRG.387.2,blat.proc3829871.chain_356	2	STRG.387.1,blat.proc3829871.chain_357	2
scaffold_21	ends_in_intron	457365	457365	-	asmbl_27351	none	Trinity_GG_30227_c0_g1_i3,blat.proc3829899.chain_764	2	STRG.23726.1,blat.proc3829899.chain_763,blat.proc3829899.chain_765	3
scaffold_12	retained_intron	14045126	14045229	-	asmbl_8091,asmbl_8093	none	STRG.15216.2,STRG.15216.3,blat.proc3829893.chain_3658,blat.proc3829893.chain_3662	4	STRG.15216.4,blat.proc3829893.chain_3659	2
scaffold_24	ends_in_intron	9953160	9953160	-	asmbl_33154	none	blat.proc3829901.chain_245	1	STRG.26947.1,STRG.26947.3,STRG.26947.4,STRG.26947.8,blat.proc3829901.chain_248,blat.proc3829901.chain_249,blat.proc3829901.chain_250	7
scaffold_11	starts_in_intron	3602481	3602481	-	asmbl_6536	none	blat.proc3829893.chain_1928	1	STRG.13479.1,STRG.13479.2,blat.proc3829893.chain_1926,blat.proc3829893.chain_1927	4
scaffold_22	spliced_intron	6130130	6130241	+	asmbl_29389,asmbl_29390,asmbl_29391,asmbl_29396	none	STRG.24955.3,STRG.24955.4,blat.proc3829883.chain_2008,blat.proc3829883.chain_2009,blat.proc3829883.chain_2010	5	STRG.24955.6,Trinity_GG_13800_c2_g1_i4,blat.proc3829883.chain_2005,blat.proc3829883.chain_2006	4
scaffold_12	starts_in_intron	4613210	4613210	-	asmbl_7551	none	STRG.14626.3	1	STRG.14626.1,STRG.14626.2,STRG.14626.4,blat.proc3829893.chain_2996,blat.proc3829893.chain_2997,blat.proc3829893.chain_2998,blat.proc3829893.chain_2999,blat.proc3829893.chain_3001	8
scaffold_1	spliced_intron	5706882	5706999	+	asmbl_1747,asmbl_1749,asmbl_1751	none	STRG.369.1,blat.proc3829871.chain_429,blat.proc3829871.chain_431,blat.proc3829871.chain_432	4	blat.proc3829871.chain_433	1
scaffold_24	starts_in_intron	1953150	1953150	-	asmbl_32749	none	blat.proc3829899.chain_3467	1	STRG.26404.1,blat.proc3829899.chain_3468,blat.proc3829899.chain_3469	3
scaffold_4	ends_in_intron	1634687	1634687	+	asmbl_42446	none	STRG.4195.2,blat.proc3829873.chain_542	2	STRG.4195.1,blat.proc3829873.chain_541	2
scaffold_12	alternate_exon	7651199	7651608	+	asmbl_8739	none	STRG.14833.1,Trinity_GG_8196_c0_g1_i2,blat.proc3829877.chain_3325	3	STRG.14833.2,Trinity_GG_8196_c0_g1_i4,blat.proc3829877.chain_3327	3
scaffold_28	alt_acceptor	7254677	7254678	+	asmbl_38354,asmbl_38355	none	STRG.29771.3,STRG.29771.4	2	STRG.29771.1,STRG.29771.2,Trinity_GG_16499_c0_g1_i1,Trinity_GG_16499_c0_g1_i3,blat.proc3829885.chain_2878,blat.proc3829885.chain_2880	6
scaffold_3	alt_donor	7291003	7291004	-	asmbl_38913	none	STRG.3325.3,blat.proc3829887.chain_3070	2	STRG.3325.1,STRG.3325.2,blat.proc3829887.chain_3071	3
scaffold_10	alt_acceptor	3046751	3046752	-	asmbl_3062	none	STRG.12110.1,blat.proc3829893.chain_468	2	STRG.12110.2,blat.proc3829893.chain_469	2
scaffold_10	spliced_intron	3732814	3732994	+	asmbl_4345	none	STRG.12193.2,blat.proc3829877.chain_869	2	STRG.12193.1,blat.proc3829877.chain_871,blat.proc3829877.chain_872	3
scaffold_21	retained_exon	11315508	11315579	+	asmbl_28930	none	STRG.24592.1,blat.proc3829883.chain_1619	2	STRG.24592.2	1
scaffold_6	retained_exon	4999173	4999190	+	asmbl_46848	none	blat.proc3829873.chain_3548	1	STRG.7467.1,blat.proc3829873.chain_3547	2
scaffold_9	spliced_intron	6920728	6921103	-	asmbl_55065,asmbl_55069	none	STRG.11195.2,blat.proc3829891.chain_3351,blat.proc3829891.chain_3352	3	STRG.11195.1,blat.proc3829891.chain_3350	2
scaffold_15	retained_exon	15347792	15347915	+	asmbl_14704	none	STRG.18908.1	1	STRG.18908.2	1
scaffold_13	ends_in_intron	6606635	6606635	+	asmbl_10931	none	STRG.15936.3,Trinity_GG_8751_c0_g1_i2,blat.proc3829879.chain_616	3	STRG.15936.1,STRG.15936.2,STRG.15936.4,Trinity_GG_8751_c0_g1_i3,Trinity_GG_8751_c0_g1_i4,blat.proc3829879.chain_613,blat.proc3829879.chain_614,blat.proc3829879.chain_615	8
scaffold_10	retained_intron	8952261	8952966	+	asmbl_4625	none	blat.proc3829877.chain_1119	1	STRG.12635.1,Trinity_GG_6915_c0_g1_i1,blat.proc3829877.chain_1120	3
scaffold_5	starts_in_intron	4704974	4704974	-	asmbl_45386	none	blat.proc3829889.chain_2001	1	STRG.5918.1,blat.proc3829889.chain_2000	2
scaffold_16	starts_in_intron	13214039	13214039	+	asmbl_17460	none	blat.proc3829881.chain_599	1	STRG.19770.1,STRG.19770.2,STRG.19770.3,blat.proc3829881.chain_595,blat.proc3829881.chain_596,blat.proc3829881.chain_598	6
scaffold_6	retained_intron	13005188	13005430	-	asmbl_48798	none	STRG.8061.10,Trinity_GG_21547_c0_g1_i12,blat.proc3829891.chain_261	3	STRG.8061.9,blat.proc3829891.chain_276	2
scaffold_6	alt_donor	8011092	8011093	-	asmbl_48461	none	blat.proc3829889.chain_3653	1	STRG.7672.1,STRG.7672.2,blat.proc3829889.chain_3654	3
scaffold_9	alt_donor	11070749	11070750	-	asmbl_55237	none	STRG.11410.2,Trinity_GG_23315_c0_g1_i1,blat.proc3829891.chain_3546	3	STRG.11410.1,Trinity_GG_23315_c0_g1_i2,blat.proc3829891.chain_3547	3
scaffold_18	alt_acceptor	8862547	8862548	-	asmbl_20064	none	Trinity_GG_29045_c0_g1_i17,blat.proc3829897.chain_2361	2	STRG.21541.1,STRG.21541.3,blat.proc3829897.chain_2359,blat.proc3829897.chain_2360,blat.proc3829897.chain_2362	5
scaffold_4	alt_acceptor	13415774	13415775	+	asmbl_43122	none	STRG.4972.2	1	STRG.4972.1,blat.proc3829873.chain_1259,blat.proc3829873.chain_1260	3
scaffold_7	spliced_intron	11987431	11987607	-	asmbl_49992	none	STRG.9293.2,blat.proc3829891.chain_1528	2	STRG.9293.1,blat.proc3829891.chain_1527	2
scaffold_4	starts_in_intron	13850918	13850918	+	asmbl_43164	none	blat.proc3829873.chain_1339	1	STRG.5006.1,blat.proc3829873.chain_1338	2
scaffold_4	spliced_intron	4103343	4103635	+	asmbl_42559	none	blat.proc3829873.chain_662	1	Trinity_GG_2393_c0_g1_i1,blat.proc3829873.chain_653,blat.proc3829873.chain_654,blat.proc3829873.chain_658	4
scaffold_12	starts_in_intron	12341983	12341983	-	asmbl_8008	none	blat.proc3829893.chain_3521	1	STRG.15125.1,blat.proc3829893.chain_3522	2
scaffold_24	retained_intron	8737517	8737605	-	asmbl_33090,asmbl_33091	none	STRG.26873.2,blat.proc3829901.chain_169	2	STRG.26873.1,blat.proc3829901.chain_170,blat.proc3829901.chain_171,blat.proc3829901.chain_172	4
scaffold_11	retained_intron	1985399	1985437	+	asmbl_5308	none	STRG.13350.1	1	blat.proc3829893.chain_1765	1
scaffold_8	alternate_exon	17302728	17302777	-	asmbl_53454	none	STRG.10645.3,blat.proc3829891.chain_2807	2	STRG.10645.1,STRG.10645.2,blat.proc3829891.chain_2805,blat.proc3829891.chain_2806	4
scaffold_17	starts_in_intron	12094253	12094253	-	asmbl_19363	none	blat.proc3829897.chain_1632	1	STRG.20729.1,blat.proc3829897.chain_1631	2
scaffold_4	retained_intron	5651119	5651379	-	asmbl_41355,asmbl_41359,asmbl_41360,asmbl_41361,asmbl_41362,asmbl_41368	none	STRG.4469.1,blat.proc3829889.chain_605,blat.proc3829889.chain_606,blat.proc3829889.chain_609,blat.proc3829889.chain_610,blat.proc3829889.chain_613	6	STRG.4469.2,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_608,blat.proc3829889.chain_611,blat.proc3829889.chain_612	6
scaffold_2	skipped_exon	15267438	15267954	+	asmbl_25024	none	blat.proc3829871.chain_2516	1	STRG.2480.3,blat.proc3829871.chain_2522	2
scaffold_18	retained_intron	823947	824156	+	asmbl_20351,asmbl_20353	none	STRG.20996.2,Trinity_GG_11513_c0_g1_i7,blat.proc3829881.chain_1778,blat.proc3829881.chain_1780	4	STRG.20996.1,blat.proc3829881.chain_1781,blat.proc3829881.chain_1782	3
scaffold_14	starts_in_intron	15545257	15545257	+	asmbl_12603	none	Trinity_GG_9729_c0_g2_i2,blat.proc3829879.chain_2373	2	STRG.17778.1,Trinity_GG_9729_c0_g1_i2,blat.proc3829879.chain_2370	3
scaffold_7	spliced_intron	4936495	4936637	+	asmbl_50650,asmbl_50651,asmbl_50652,asmbl_50653,asmbl_50654,asmbl_50656,asmbl_50661,asmbl_50662	none	STRG.8834.1,STRG.8834.2,STRG.8834.3,STRG.8834.4,blat.proc3829875.chain_1276,blat.proc3829875.chain_1277,blat.proc3829875.chain_1278,blat.proc3829875.chain_1279,blat.proc3829875.chain_1282,blat.proc3829875.chain_1283	10	blat.proc3829875.chain_1275,blat.proc3829875.chain_1281	2
scaffold_23	alt_acceptor	361674	361675	-	asmbl_31310,asmbl_31311,asmbl_31315,asmbl_31317,asmbl_31319,asmbl_31320	none	STRG.25543.1,STRG.25543.3,Trinity_GG_31299_c0_g1_i4,blat.proc3829899.chain_2649,blat.proc3829899.chain_2650,blat.proc3829899.chain_2654,blat.proc3829899.chain_2655,blat.proc3829899.chain_2656	8	STRG.25543.4,STRG.25543.5,blat.proc3829899.chain_2652,blat.proc3829899.chain_2653	4
scaffold_21	alt_acceptor	2594137	2594138	+	asmbl_28425	none	STRG.23879.1,blat.proc3829883.chain_1029	2	STRG.23879.2	1
scaffold_15	skipped_exon	1962523	1963918	+	asmbl_13982,asmbl_13983	none	STRG.17971.1,STRG.17971.2	2	STRG.17971.3,blat.proc3829879.chain_2658	2
scaffold_12	spliced_intron	16399852	16401627	+	asmbl_9134,asmbl_9136	none	STRG.15385.2,STRG.15385.5,Trinity_GG_8419_c0_g1_i5,Trinity_GG_8419_c0_g1_i7,blat.proc3829877.chain_3733,blat.proc3829877.chain_3738	6	STRG.15385.1,STRG.15385.4,STRG.15385.6,Trinity_GG_8419_c0_g1_i1,Trinity_GG_8419_c0_g1_i2,Trinity_GG_8419_c0_g1_i6,blat.proc3829877.chain_3734,blat.proc3829877.chain_3735,blat.proc3829877.chain_3736	9
scaffold_26	spliced_intron	5755074	5756532	+	asmbl_35565	none	STRG.28257.1	1	blat.proc3829885.chain_1177,blat.proc3829885.chain_1178	2
scaffold_15	ends_in_intron	9573542	9573542	-	asmbl_15407	none	Trinity_GG_27380_c1_g1_i1,blat.proc3829895.chain_3214	2	STRG.18466.1,STRG.18466.2,blat.proc3829895.chain_3215,blat.proc3829895.chain_3216	4
scaffold_27	alt_acceptor	5802259	5802260	-	asmbl_36985	none	STRG.28961.1,blat.proc3829901.chain_2119	2	STRG.28961.2	1
scaffold_9	retained_intron	9470104	9470201	-	asmbl_55148,asmbl_55150	none	STRG.11298.2,blat.proc3829891.chain_3467	2	STRG.11298.1,STRG.11298.3,blat.proc3829891.chain_3464,blat.proc3829891.chain_3465,blat.proc3829891.chain_3466	5
scaffold_4	retained_intron	13076300	13076428	+	asmbl_43110	none	blat.proc3829873.chain_1239	1	STRG.4945.3,blat.proc3829873.chain_1238	2
scaffold_18	alt_acceptor	632654	632655	+	asmbl_20338	none	STRG.20993.3	1	STRG.20993.1,blat.proc3829881.chain_1871	2
scaffold_6	alt_donor	7849656	7849657	+	asmbl_47022	none	STRG.7662.2	1	STRG.7662.1	1
scaffold_27	alt_acceptor	2903073	2903074	-	asmbl_36821	none	STRG.28755.1,Trinity_GG_33104_c0_g1_i2,blat.proc3829901.chain_1932	3	STRG.28755.2	1
scaffold_18	retained_intron	5984775	5985191	+	asmbl_20678,asmbl_20679	none	STRG.21346.3,blat.proc3829881.chain_2204	2	STRG.21346.1,blat.proc3829881.chain_2205,blat.proc3829881.chain_2211,blat.proc3829881.chain_2212	4
scaffold_1611	retained_intron	1827	1982	+	asmbl_17635	none	Trinity_GG_16915_c0_g1_i2,blat.proc3829885.chain_3541	2	STRG.30612.1	1
scaffold_7	ends_in_intron	12269958	12269958	+	asmbl_51112	none	Trinity_GG_5141_c2_g1_i1,blat.proc3829875.chain_1717	2	STRG.9313.2,STRG.9313.4,STRG.9313.5,Trinity_GG_5141_c0_g1_i1,Trinity_GG_5141_c0_g1_i2,Trinity_GG_5141_c0_g1_i5,Trinity_GG_5141_c0_g1_i6,Trinity_GG_5141_c0_g1_i8,blat.proc3829875.chain_1712,blat.proc3829875.chain_1713,blat.proc3829875.chain_1714	11
scaffold_13	skipped_exon	13973928	13974878	+	asmbl_11396	none	blat.proc3829879.chain_1167	1	blat.proc3829879.chain_1168,blat.proc3829879.chain_1169	2
scaffold_20	alt_donor	1624268	1624269	-	asmbl_26524	none	STRG.22888.2	1	STRG.22888.1,STRG.22888.3	2
scaffold_4	alt_acceptor	12694279	12694280	+	asmbl_43068	none	STRG.4907.1,Trinity_GG_2728_c0_g1_i2,blat.proc3829873.chain_1231	3	STRG.4907.2,Trinity_GG_2728_c0_g1_i1,blat.proc3829873.chain_1232	3
scaffold_13	retained_intron	2339458	2339876	+	asmbl_10575,asmbl_10580,asmbl_10584	none	blat.proc3829879.chain_152,blat.proc3829879.chain_155,blat.proc3829879.chain_160	3	STRG.15543.10,STRG.15543.11,STRG.15543.3,STRG.15543.4,STRG.15543.6,STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_154,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_161,blat.proc3829879.chain_162,blat.proc3829879.chain_164	13
scaffold_2	spliced_intron	13401811	13401905	+	asmbl_24882	none	STRG.2361.1,blat.proc3829871.chain_2474	2	STRG.2361.2,Trinity_GG_1332_c0_g1_i1,blat.proc3829871.chain_2475	3
scaffold_10	retained_exon	3385409	3385600	+	asmbl_4314	none	STRG.12161.1,Trinity_GG_6743_c0_g1_i2,blat.proc3829877.chain_830	3	STRG.12161.2,Trinity_GG_6743_c0_g1_i1,blat.proc3829877.chain_831	3
scaffold_2	retained_intron	14021377	14021829	+	asmbl_24903	none	Trinity_GG_1338_c0_g1_i4,blat.proc3829871.chain_2491,blat.proc3829871.chain_2492	3	STRG.2396.1,Trinity_GG_1338_c0_g1_i2,blat.proc3829871.chain_2493,blat.proc3829871.chain_2494	4
scaffold_22	retained_intron	4239535	4239758	-	asmbl_29977,asmbl_29978,asmbl_29985	none	STRG.24838.1,STRG.24838.4,blat.proc3829899.chain_1981,blat.proc3829899.chain_1983	4	STRG.24838.3,blat.proc3829899.chain_1980	2
scaffold_13	alt_donor	15364039	15364040	+	asmbl_11476	none	Trinity_GG_9120_c0_g1_i3,blat.proc3829879.chain_1298	2	STRG.16566.1,Trinity_GG_9120_c0_g1_i4,blat.proc3829879.chain_1299	3
scaffold_8	starts_in_intron	11846359	11846359	+	asmbl_52274	none	blat.proc3829875.chain_2976	1	STRG.10382.2,STRG.10382.3,blat.proc3829875.chain_2967,blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2975,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978,blat.proc3829875.chain_2979	12
scaffold_3	alternate_exon	18159427	18159472	-	asmbl_39545	none	STRG.4023.4	1	STRG.4023.1,STRG.4023.2,STRG.4023.3,blat.proc3829889.chain_96,blat.proc3829889.chain_97	5
scaffold_2	starts_in_intron	14443077	14443077	+	asmbl_24963	none	Trinity_GG_1376_c0_g1_i3,blat.proc3829871.chain_2603	2	STRG.2445.1,STRG.2445.2,blat.proc3829871.chain_2602	3
scaffold_23	alt_donor	1860659	1860660	+	asmbl_30667	none	STRG.25647.1,Trinity_GG_14162_c0_g1_i2,blat.proc3829883.chain_2546	3	Trinity_GG_14162_c0_g1_i1,blat.proc3829883.chain_2545	2
scaffold_23	alt_acceptor	7513089	7513090	-	asmbl_31753	none	STRG.26043.1	1	STRG.26043.2,blat.proc3829899.chain_3151	2
scaffold_25	skipped_exon	5053997	5054997	+	asmbl_33557	none	STRG.27416.2,blat.proc3829885.chain_366	2	STRG.27416.1,blat.proc3829885.chain_365	2
scaffold_6	spliced_intron	1584416	1584521	+	asmbl_46675	none	STRG.7199.1	1	Trinity_GG_3931_c1_g1_i2	1
scaffold_25	alt_acceptor	8442380	8442381	-	asmbl_34415	none	STRG.27660.1,blat.proc3829901.chain_906	2	STRG.27660.2	1
scaffold_21	spliced_intron	7009648	7009840	-	asmbl_27799,asmbl_27800	none	STRG.24222.1,STRG.24222.2,blat.proc3829899.chain_1273,blat.proc3829899.chain_1275	4	blat.proc3829899.chain_1274	1
scaffold_1	spliced_intron	6576083	6576214	-	asmbl_381,asmbl_383	none	STRG.448.2,blat.proc3829887.chain_262,blat.proc3829887.chain_264	3	STRG.448.1,blat.proc3829887.chain_263	2
scaffold_17	alternate_exon	544720	544946	+	asmbl_17681	none	blat.proc3829881.chain_736	1	STRG.19891.3	1
scaffold_17	alt_acceptor	11611592	11611593	-	asmbl_19343	none	STRG.20704.1,blat.proc3829897.chain_1654	2	STRG.20704.2,blat.proc3829897.chain_1653	2
scaffold_24	retained_exon	7099438	7099912	+	asmbl_32373	none	STRG.26741.1	1	STRG.26741.2	1
scaffold_3	alternate_exon	4898690	4898819	-	asmbl_38778	none	STRG.3186.2	1	STRG.3186.1,blat.proc3829887.chain_2865	2
scaffold_14	retained_exon	219872	220576	-	asmbl_12786	none	STRG.16705.1,blat.proc3829895.chain_1395	2	STRG.16705.2,STRG.16705.3,STRG.16705.4,blat.proc3829895.chain_1397,blat.proc3829895.chain_1398,blat.proc3829895.chain_1399	6
scaffold_15	ends_in_intron	3152594	3152594	-	asmbl_15090	none	blat.proc3829895.chain_2755	1	STRG.18082.1,Trinity_GG_27143_c0_g1_i3,blat.proc3829895.chain_2753	3
scaffold_9	retained_intron	119370	119545	+	asmbl_53735	none	Trinity_GG_5979_c0_g1_i4	1	STRG.10764.1	1
scaffold_8	starts_in_intron	7447412	7447412	-	asmbl_52897	none	blat.proc3829891.chain_2174	1	STRG.10064.1,blat.proc3829891.chain_2176,blat.proc3829891.chain_2177	3
scaffold_13	alt_acceptor	2339177	2339178	+	asmbl_10584	none	blat.proc3829879.chain_160	1	blat.proc3829879.chain_156	1
scaffold_3	retained_intron	12465871	12466558	-	asmbl_39168	none	STRG.3637.1,blat.proc3829887.chain_3405	2	STRG.3637.2,Trinity_GG_19005_c0_g1_i1,blat.proc3829887.chain_3406	3
scaffold_16	alt_acceptor	3569218	3569219	-	asmbl_16158,asmbl_16161	none	STRG.19160.2,STRG.19160.3,Trinity_GG_27773_c0_g1_i8,blat.proc3829897.chain_192	4	STRG.19160.1,Trinity_GG_27773_c0_g1_i6,blat.proc3829897.chain_190	3
scaffold_7	retained_intron	9311727	9311873	+	asmbl_50960	none	blat.proc3829875.chain_1610	1	STRG.9133.1,Trinity_GG_5081_c0_g1_i1,Trinity_GG_5081_c0_g1_i2,blat.proc3829875.chain_1611,blat.proc3829875.chain_1612	5
scaffold_21	alt_donor	3256471	3256472	+	asmbl_28502	none	STRG.23937.1,blat.proc3829883.chain_1019	2	STRG.23937.2,blat.proc3829883.chain_1018	2
scaffold_13	spliced_intron	394778	395582	-	asmbl_9307,asmbl_9308,asmbl_9309,asmbl_9316,asmbl_9317	none	STRG.15428.1,STRG.15428.2,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i8,blat.proc3829895.chain_226,blat.proc3829895.chain_230,blat.proc3829895.chain_233	8	Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i25,Trinity_GG_25691_c0_g1_i7,blat.proc3829895.chain_223,blat.proc3829895.chain_229,blat.proc3829895.chain_232	6
scaffold_4	starts_in_intron	4096236	4096236	+	asmbl_42551	none	blat.proc3829873.chain_639	1	STRG.4313.1,STRG.4313.2,STRG.4313.3,STRG.4313.4,blat.proc3829873.chain_631,blat.proc3829873.chain_632,blat.proc3829873.chain_635,blat.proc3829873.chain_636	8
scaffold_28	alt_donor	7843903	7843904	-	asmbl_37751	none	STRG.29833.2,blat.proc3829901.chain_2952	2	STRG.29833.1,blat.proc3829901.chain_2951	2
scaffold_4	retained_intron	17421974	17422122	-	asmbl_42011	none	blat.proc3829889.chain_1356	1	blat.proc3829889.chain_1357	1
scaffold_7	retained_exon	4873996	4874087	+	asmbl_50632	none	Trinity_GG_4853_c0_g1_i3,blat.proc3829875.chain_1235	2	STRG.8823.1,blat.proc3829875.chain_1233,blat.proc3829875.chain_1234	3
scaffold_8	ends_in_intron	17794680	17794680	+	asmbl_52494,asmbl_52497	none	Trinity_GG_5881_c0_g1_i6,blat.proc3829875.chain_3076,blat.proc3829875.chain_3077	3	STRG.10684.1,Trinity_GG_5881_c0_g1_i3,blat.proc3829875.chain_3073,blat.proc3829875.chain_3074	4
scaffold_23	ends_in_intron	10976539	10976539	+	asmbl_31188,asmbl_31197	none	blat.proc3829883.chain_3198,blat.proc3829883.chain_3202	2	STRG.26281.1,Trinity_GG_14524_c0_g1_i13,Trinity_GG_14524_c0_g1_i8,blat.proc3829883.chain_3193,blat.proc3829883.chain_3194,blat.proc3829883.chain_3195,blat.proc3829883.chain_3199,blat.proc3829883.chain_3200,blat.proc3829883.chain_3203	9
scaffold_16	alt_donor	10447527	10447528	+	asmbl_17338,asmbl_17340	none	STRG.19602.2,STRG.19602.4	2	STRG.19602.1,STRG.19602.5,Trinity_GG_10708_c0_g1_i3,Trinity_GG_10708_c1_g1_i1,blat.proc3829881.chain_423,blat.proc3829881.chain_427	6
scaffold_2	alt_acceptor	18614248	18614249	-	asmbl_23821	none	STRG.2737.1,blat.proc3829887.chain_2515	2	blat.proc3829887.chain_2516	1
scaffold_14	alt_donor	9654683	9654684	-	asmbl_13371	none	blat.proc3829895.chain_2025	1	STRG.17338.1,blat.proc3829895.chain_2027	2
scaffold_23	alt_acceptor	10988426	10988427	-	asmbl_31897,asmbl_31899,asmbl_31900	none	STRG.26288.1,STRG.26288.2,blat.proc3829899.chain_3315,blat.proc3829899.chain_3317	4	Trinity_GG_31677_c0_g1_i5,blat.proc3829899.chain_3316	2
scaffold_14	spliced_intron	12154408	12154530	+	asmbl_12397	none	STRG.17532.1,blat.proc3829879.chain_2229	2	blat.proc3829879.chain_2231	1
scaffold_15	alternate_exon	11399940	11402679	-	asmbl_15510,asmbl_15511,asmbl_15512,asmbl_15515	none	STRG.18596.1,STRG.18596.2,STRG.18596.3,STRG.18596.5,blat.proc3829895.chain_3373,blat.proc3829895.chain_3374,blat.proc3829895.chain_3375	7	STRG.18596.4,STRG.18596.6	2
scaffold_11	alt_acceptor	2455361	2455362	-	asmbl_6480	none	STRG.13386.1,blat.proc3829893.chain_1859	2	STRG.13386.2,blat.proc3829893.chain_1860	2
scaffold_18	alternate_exon	202828	204473	+	asmbl_20303	none	blat.proc3829881.chain_1841	1	Trinity_GG_11543_c0_g1_i1,blat.proc3829881.chain_1838	2
scaffold_21	alt_donor	7493557	7493558	+	asmbl_28757	none	STRG.24265.1	1	blat.proc3829883.chain_1414	1
scaffold_5	alt_acceptor	16583731	16583732	-	asmbl_46135,asmbl_46136	none	blat.proc3829889.chain_2887,blat.proc3829889.chain_2890	2	STRG.6840.2	1
scaffold_5	retained_intron	4696384	4696509	+	asmbl_43951	none	STRG.5917.1	1	STRG.5917.3	1
scaffold_15	alt_acceptor	3687306	3687307	-	asmbl_15116,asmbl_15118,asmbl_15122	none	STRG.18132.2,STRG.18132.3,blat.proc3829895.chain_2892,blat.proc3829895.chain_2893	4	blat.proc3829895.chain_2894	1
scaffold_28	alternate_exon	4205205	4210909	+	asmbl_38215	none	STRG.29593.1,blat.proc3829885.chain_2727	2	STRG.29593.2	1
scaffold_3	starts_in_intron	16994639	16994639	+	asmbl_40596,asmbl_40597	none	Trinity_GG_2202_c1_g1_i1	1	STRG.3942.1,Trinity_GG_2202_c0_g1_i2,blat.proc3829873.chain_313	3
scaffold_3	alt_acceptor	9582317	9582318	-	asmbl_39010	none	STRG.3431.1,blat.proc3829887.chain_3209	2	STRG.3431.2	1
scaffold_14	ends_in_intron	7584765	7584765	-	asmbl_13215	none	Trinity_GG_26661_c0_g1_i2,blat.proc3829895.chain_1912	2	STRG.17194.2	1
scaffold_3	starts_in_intron	11774394	11774394	-	asmbl_39142	none	Trinity_GG_18988_c0_g1_i2,blat.proc3829887.chain_3380	2	STRG.3606.1,STRG.3606.2,blat.proc3829887.chain_3381	3
scaffold_7	spliced_intron	12386811	12386906	-	asmbl_50013,asmbl_50016,asmbl_50017,asmbl_50018,asmbl_50020	none	STRG.9328.1,blat.proc3829891.chain_1532,blat.proc3829891.chain_1533,blat.proc3829891.chain_1534,blat.proc3829891.chain_1535,blat.proc3829891.chain_1538	6	blat.proc3829891.chain_1536	1
scaffold_17	spliced_intron	10029016	10029173	+	asmbl_18281	none	STRG.20606.1	1	Trinity_GG_11248_c0_g1_i4,blat.proc3829881.chain_1338	2
scaffold_27	skipped_exon	6610373	6611472	-	asmbl_37023	none	STRG.29008.2,blat.proc3829901.chain_2172	2	STRG.29008.1,blat.proc3829901.chain_2171	2
scaffold_6	alt_donor	6939265	6939266	+	asmbl_46962,asmbl_46964	none	STRG.7596.1,STRG.7596.2,blat.proc3829873.chain_3708	3	blat.proc3829873.chain_3706	1
scaffold_22	alternate_exon	10701912	10702028	+	asmbl_29654	none	STRG.25393.2,Trinity_GG_14040_c0_g1_i2,blat.proc3829883.chain_2364	3	STRG.25393.1,Trinity_GG_14040_c0_g1_i1,blat.proc3829883.chain_2363	3
scaffold_13	spliced_intron	738856	739000	+	asmbl_10485	none	STRG.15446.3	1	STRG.15446.2,blat.proc3829879.chain_133	2
scaffold_25	ends_in_intron	8685798	8685798	-	asmbl_34430	none	blat.proc3829901.chain_908	1	STRG.27676.1,blat.proc3829901.chain_909	2
scaffold_19	alternate_exon	13141475	13142652	+	asmbl_22661	none	STRG.22620.2,blat.proc3829881.chain_3586	2	STRG.22620.3	1
scaffold_23	retained_intron	10977777	10977923	+	asmbl_31187,asmbl_31189,asmbl_31192,asmbl_31194,asmbl_31195,asmbl_31196	none	Trinity_GG_14524_c0_g1_i12,Trinity_GG_14524_c0_g1_i8,blat.proc3829883.chain_3192,blat.proc3829883.chain_3193,blat.proc3829883.chain_3197,blat.proc3829883.chain_3199,blat.proc3829883.chain_3200,blat.proc3829883.chain_3203	8	STRG.26281.1,STRG.26281.2,Trinity_GG_14524_c0_g1_i13,Trinity_GG_14524_c0_g1_i9,blat.proc3829883.chain_3194,blat.proc3829883.chain_3195,blat.proc3829883.chain_3201	7
scaffold_5	spliced_intron	2673418	2674638	-	asmbl_45282,asmbl_45284	none	STRG.5790.6,blat.proc3829889.chain_1872,blat.proc3829889.chain_1873	3	STRG.5790.1,STRG.5790.3,STRG.5790.5,blat.proc3829889.chain_1875,blat.proc3829889.chain_1876	5
scaffold_13	skipped_exon	15732519	15733840	-	asmbl_10221	none	STRG.16601.1	1	blat.proc3829895.chain_1293	1
scaffold_8	spliced_intron	9903716	9903809	-	asmbl_53060,asmbl_53061,asmbl_53064	none	STRG.10235.1,Trinity_GG_22721_c0_g1_i2,blat.proc3829891.chain_2393,blat.proc3829891.chain_2394,blat.proc3829891.chain_2395	5	Trinity_GG_22721_c0_g1_i5,blat.proc3829891.chain_2396	2
scaffold_11	retained_intron	3767045	3767446	-	asmbl_6554	none	Trinity_GG_24570_c0_g1_i1	1	STRG.13488.1,STRG.13488.2,STRG.13488.3,STRG.13488.4,Trinity_GG_24570_c0_g1_i4,blat.proc3829893.chain_1962	6
scaffold_2	skipped_exon	3347885	3348812	-	asmbl_22997	none	STRG.1768.2	1	STRG.1768.1	1
scaffold_6	ends_in_intron	9138861	9138861	+	asmbl_47149	none	blat.proc3829875.chain_196	1	STRG.7784.4,blat.proc3829875.chain_195,blat.proc3829875.chain_197,blat.proc3829875.chain_198,blat.proc3829875.chain_201,blat.proc3829875.chain_202,blat.proc3829875.chain_203,blat.proc3829875.chain_204	8
scaffold_2	alt_acceptor	11474973	11474974	-	asmbl_23467,asmbl_23469	none	STRG.2265.1,STRG.2265.2,Trinity_GG_18293_c0_g1_i1,Trinity_GG_18293_c0_g1_i3,blat.proc3829887.chain_2173,blat.proc3829887.chain_2174	6	STRG.2265.3,Trinity_GG_18293_c0_g1_i2,blat.proc3829887.chain_2172	3
scaffold_7	alternate_exon	6623395	6623529	+	asmbl_50753	none	STRG.8925.1,STRG.8925.2,Trinity_GG_4892_c0_g1_i1,blat.proc3829875.chain_1307	4	STRG.8925.3,STRG.8925.4,Trinity_GG_4892_c1_g1_i1,blat.proc3829875.chain_1308	4
scaffold_18	alternate_exon	1967688	1967732	-	asmbl_19714	none	STRG.21075.1,blat.proc3829897.chain_1967	2	STRG.21075.2,blat.proc3829897.chain_1968	2
scaffold_11	spliced_intron	11943634	11943839	-	asmbl_7019,asmbl_7021,asmbl_7022,asmbl_7023,asmbl_7029	none	STRG.14160.2,STRG.14160.3,STRG.14160.4,STRG.14160.5,STRG.14160.6,blat.proc3829893.chain_2558	6	Trinity_GG_24916_c5_g1_i1,blat.proc3829893.chain_2568	2
scaffold_13	skipped_exon	521688	522226	+	asmbl_10453	none	Trinity_GG_8491_c0_g1_i4,blat.proc3829879.chain_112	2	STRG.15434.1,STRG.15434.2,STRG.15434.3,STRG.15434.4,STRG.15434.5,Trinity_GG_8491_c0_g1_i1,blat.proc3829879.chain_110,blat.proc3829879.chain_111,blat.proc3829879.chain_114,blat.proc3829879.chain_115,blat.proc3829879.chain_116	11
scaffold_13	starts_in_intron	11541280	11541280	+	asmbl_11255	none	STRG.16290.2,Trinity_GG_8958_c0_g1_i1,blat.proc3829879.chain_1039	3	STRG.16290.1,Trinity_GG_8958_c0_g1_i2,Trinity_GG_8958_c0_g1_i4,blat.proc3829879.chain_1037,blat.proc3829879.chain_1038,blat.proc3829879.chain_1040,blat.proc3829879.chain_1041	7
scaffold_8	spliced_intron	11857014	11857183	-	asmbl_53169	none	STRG.10383.1,blat.proc3829891.chain_2448	2	blat.proc3829891.chain_2449	1
scaffold_6	alternate_exon	2930152	2930384	-	asmbl_48143	none	STRG.7290.4	1	STRG.7290.2,blat.proc3829889.chain_3236,blat.proc3829889.chain_3237	3
scaffold_25	alt_donor	9119403	9119404	+	asmbl_33776	none	STRG.27709.3	1	STRG.27709.2	1
scaffold_25	ends_in_intron	5625819	5625819	-	asmbl_34252	none	Trinity_GG_32396_c0_g1_i3,blat.proc3829901.chain_764	2	STRG.27446.1,STRG.27446.2,Trinity_GG_32396_c0_g1_i1,Trinity_GG_32396_c0_g1_i2,blat.proc3829901.chain_765,blat.proc3829901.chain_766	6
scaffold_20	starts_in_intron	9255426	9255426	-	asmbl_26954	none	blat.proc3829899.chain_504	1	STRG.23462.1,blat.proc3829899.chain_505	2
scaffold_2	spliced_intron	16084074	16084172	-	asmbl_23682,asmbl_23685	none	STRG.2559.1,blat.proc3829887.chain_2398,blat.proc3829887.chain_2401	3	blat.proc3829887.chain_2399	1
scaffold_9	alternate_exon	15495475	15495851	-	asmbl_55495	none	STRG.11737.2,blat.proc3829893.chain_121	2	STRG.11737.3,blat.proc3829893.chain_117	2
scaffold_1	retained_intron	5208949	5209138	+	asmbl_1709	none	blat.proc3829871.chain_390	1	STRG.323.1,STRG.323.2,STRG.323.3,blat.proc3829871.chain_391,blat.proc3829871.chain_392,blat.proc3829871.chain_393,blat.proc3829871.chain_394,blat.proc3829871.chain_395	8
scaffold_17	retained_intron	7671529	7672234	+	asmbl_18048	none	Trinity_GG_11176_c0_g1_i2,blat.proc3829881.chain_1179	2	STRG.20394.1,blat.proc3829881.chain_1178	2
scaffold_28	retained_exon	538460	538587	-	asmbl_37232,asmbl_37233,asmbl_37234,asmbl_37236	none	STRG.29258.1,STRG.29258.2,blat.proc3829901.chain_2295,blat.proc3829901.chain_2296,blat.proc3829901.chain_2297	5	STRG.29258.3	1
scaffold_2	retained_intron	14220662	14220786	-	asmbl_23598,asmbl_23600	none	blat.proc3829887.chain_2200,blat.proc3829887.chain_2202	2	STRG.2413.1,blat.proc3829887.chain_2199,blat.proc3829887.chain_2201,blat.proc3829887.chain_2203	4
scaffold_4	starts_in_intron	17500730	17500730	-	asmbl_42029	none	Trinity_GG_19959_c0_g1_i3	1	STRG.5337.1,STRG.5337.2,blat.proc3829889.chain_1339,blat.proc3829889.chain_1341	4
scaffold_2	alt_acceptor	20327891	20327892	-	asmbl_23913	none	STRG.2878.2	1	STRG.2878.1,blat.proc3829887.chain_2686	2
scaffold_28	ends_in_intron	5577526	5577526	+	asmbl_38291	none	Trinity_GG_16454_c0_g1_i3,blat.proc3829885.chain_2792	2	STRG.29670.3,Trinity_GG_16454_c0_g1_i4,blat.proc3829885.chain_2793	3
scaffold_7	retained_intron	15595021	15595243	+	asmbl_51329	none	STRG.9548.1,blat.proc3829875.chain_2000	2	STRG.9548.2,Trinity_GG_5298_c0_g1_i1,blat.proc3829875.chain_1999	3
scaffold_3	alternate_exon	11635012	11641666	+	asmbl_40320	none	blat.proc3829873.chain_15	1	STRG.3593.4	1
scaffold_10	skipped_exon	1492524	1494142	-	asmbl_2976,asmbl_2980	none	STRG.12017.1,blat.proc3829893.chain_392,blat.proc3829893.chain_394	3	STRG.12017.3,blat.proc3829893.chain_389	2
scaffold_15	alt_donor	397320	397321	+	asmbl_13915	none	STRG.17881.1,blat.proc3829879.chain_2576	2	STRG.17881.2	1
scaffold_5	skipped_exon	16645579	16646640	+	asmbl_44775	none	STRG.6846.1,blat.proc3829873.chain_2908	2	STRG.6846.2,blat.proc3829873.chain_2906	2
scaffold_7	spliced_intron	13205270	13205387	+	asmbl_51194,asmbl_51195,asmbl_51197,asmbl_51198	none	STRG.9419.1,STRG.9419.2,STRG.9419.3,blat.proc3829875.chain_1851,blat.proc3829875.chain_1853,blat.proc3829875.chain_1856	6	blat.proc3829875.chain_1855	1
scaffold_6	spliced_intron	5752485	5752688	+	asmbl_46916,asmbl_46917	none	STRG.7525.2,blat.proc3829873.chain_3644,blat.proc3829873.chain_3647	3	STRG.7525.1,Trinity_GG_4120_c0_g1_i1,blat.proc3829873.chain_3645,blat.proc3829873.chain_3646	4
scaffold_6	alternate_exon	2476390	2480099	-	asmbl_48079	none	STRG.7236.3	1	STRG.7236.4,Trinity_GG_21054_c0_g1_i10,blat.proc3829889.chain_3218,blat.proc3829889.chain_3221	4
scaffold_1	starts_in_intron	3680319	3680319	+	asmbl_1627	none	blat.proc3829871.chain_292	1	STRG.237.1,STRG.237.3,blat.proc3829871.chain_293	3
scaffold_18	alternate_exon	9635958	9636617	-	asmbl_20097	none	STRG.21568.1,blat.proc3829897.chain_2405	2	STRG.21568.2,blat.proc3829897.chain_2402	2
scaffold_14	retained_intron	5791100	5791212	-	asmbl_13077	none	Trinity_GG_26569_c1_g2_i1,blat.proc3829895.chain_1734	2	STRG.17031.1,blat.proc3829895.chain_1731	2
scaffold_10	starts_in_intron	9720366	9720366	-	asmbl_3608	none	blat.proc3829893.chain_1191	1	STRG.12695.1,blat.proc3829893.chain_1192	2
scaffold_9	alt_acceptor	18389554	18389555	+	asmbl_54638,asmbl_54639	none	STRG.11879.1,STRG.11879.3	2	STRG.11879.2,blat.proc3829877.chain_596	2
scaffold_18	alt_acceptor	1895347	1895348	-	asmbl_19699,asmbl_19702	none	STRG.21072.4,STRG.21072.6	2	STRG.21072.10,STRG.21072.7,STRG.21072.9,blat.proc3829897.chain_1890,blat.proc3829897.chain_1897	5
scaffold_3	alt_acceptor	5951454	5951455	-	asmbl_38835	none	STRG.3255.3,blat.proc3829887.chain_3046	2	STRG.3255.5,STRG.3255.7,blat.proc3829887.chain_3047	3
scaffold_15	retained_intron	13325591	13325794	+	asmbl_14573,asmbl_14574,asmbl_14577,asmbl_14578,asmbl_14579,asmbl_14581,asmbl_14582	none	Trinity_GG_10264_c0_g1_i4,Trinity_GG_10264_c0_g1_i6,blat.proc3829879.chain_3296,blat.proc3829879.chain_3297,blat.proc3829879.chain_3298,blat.proc3829879.chain_3299,blat.proc3829879.chain_3301,blat.proc3829879.chain_3303,blat.proc3829879.chain_3304	9	STRG.18763.1,Trinity_GG_10264_c0_g1_i2,blat.proc3829879.chain_3300,blat.proc3829879.chain_3302	4
scaffold_21	alt_acceptor	6666414	6666415	-	asmbl_27767	none	STRG.24181.1,blat.proc3829899.chain_1261	2	STRG.24181.2	1
scaffold_3	retained_intron	12774687	12774814	+	asmbl_40368	none	STRG.3666.3,Trinity_GG_2058_c0_g1_i1,blat.proc3829873.chain_65	3	STRG.3666.1,STRG.3666.2	2
scaffold_8	retained_intron	18108298	18108429	+	asmbl_52526	none	STRG.10708.2,Trinity_GG_5942_c0_g1_i3,blat.proc3829875.chain_3202	3	STRG.10708.3	1
scaffold_4	spliced_intron	8427334	8427438	-	asmbl_41513	none	STRG.4672.2,blat.proc3829889.chain_775	2	blat.proc3829889.chain_776	1
scaffold_28	spliced_intron	1104760	1104779	-	asmbl_37287	none	STRG.29297.1,blat.proc3829901.chain_2397	2	Trinity_GG_33412_c0_g1_i1	1
scaffold_7	alt_acceptor	13554839	13554840	-	asmbl_50130	none	blat.proc3829891.chain_1630	1	STRG.9466.1,blat.proc3829891.chain_1631	2
scaffold_10	starts_in_intron	975801	975801	-	asmbl_2938	none	blat.proc3829893.chain_361	1	STRG.11970.1,STRG.11970.2,Trinity_GG_23642_c0_g1_i1,Trinity_GG_23642_c0_g1_i2,Trinity_GG_23642_c0_g1_i4	5
scaffold_4	alt_acceptor	13076063	13076064	+	asmbl_43114	none	STRG.4945.2	1	STRG.4945.1,STRG.4945.3,STRG.4945.4,STRG.4945.5,blat.proc3829873.chain_1237,blat.proc3829873.chain_1238,blat.proc3829873.chain_1239,blat.proc3829873.chain_1240	8
scaffold_1	retained_intron	12450440	12450569	+	asmbl_2206	none	Trinity_GG_494_c0_g1_i4,blat.proc3829871.chain_885	2	STRG.856.5,Trinity_GG_494_c0_g1_i3,blat.proc3829871.chain_887	3
scaffold_6	ends_in_intron	3053593	3053593	+	asmbl_46742,asmbl_46747	none	blat.proc3829873.chain_3448,blat.proc3829873.chain_3449	2	STRG.7308.1,blat.proc3829873.chain_3438,blat.proc3829873.chain_3439	3
scaffold_5	spliced_intron	9853379	9853480	-	asmbl_45687	none	STRG.6296.1	1	STRG.6296.2,Trinity_GG_20560_c0_g1_i1,blat.proc3829889.chain_2381	3
scaffold_8	spliced_intron	11850678	11850826	+	asmbl_52269,asmbl_52270,asmbl_52274,asmbl_52276,asmbl_52277,asmbl_52278,asmbl_52279,asmbl_52280,asmbl_52281,asmbl_52282,asmbl_52283,asmbl_52284	none	STRG.10382.2,STRG.10382.3,blat.proc3829875.chain_2967,blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2975,blat.proc3829875.chain_2976,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978,blat.proc3829875.chain_2979	13	blat.proc3829875.chain_2966,blat.proc3829875.chain_2971,blat.proc3829875.chain_2980	3
scaffold_28	starts_in_intron	2277862	2277862	-	asmbl_37355	none	STRG.29377.1,blat.proc3829901.chain_2487	2	STRG.29377.2	1
scaffold_1	spliced_intron	6283987	6284587	-	asmbl_343,asmbl_345,asmbl_347,asmbl_348,asmbl_350	none	STRG.425.1,STRG.425.3,STRG.425.6,Trinity_GG_17251_c0_g1_i12,blat.proc3829887.chain_325,blat.proc3829887.chain_328,blat.proc3829887.chain_335	7	STRG.425.7,Trinity_GG_17251_c0_g1_i2,blat.proc3829887.chain_329	3
scaffold_3100	ends_in_intron	358	358	-	asmbl_40877	none	STRG.30798.1	1	blat.proc3829901.chain_3718	1
scaffold_8	starts_in_intron	9110044	9110044	+	asmbl_52036	none	Trinity_GG_5616_c0_g1_i2,blat.proc3829875.chain_2600	2	STRG.10158.1,blat.proc3829875.chain_2599	2
scaffold_20	spliced_intron	7469036	7469153	-	asmbl_26825,asmbl_26829,asmbl_26831	none	STRG.23308.1,blat.proc3829899.chain_394,blat.proc3829899.chain_399,blat.proc3829899.chain_401	4	blat.proc3829899.chain_389,blat.proc3829899.chain_391,blat.proc3829899.chain_396	3
scaffold_13	ends_in_intron	13759646	13759646	+	asmbl_11385	none	blat.proc3829879.chain_1124	1	STRG.16420.1,STRG.16420.2,blat.proc3829879.chain_1123	3
scaffold_8	alt_acceptor	18460460	18460461	-	asmbl_53557,asmbl_53559	none	STRG.10740.1,blat.proc3829891.chain_2876,blat.proc3829891.chain_2877	3	STRG.10740.2	1
scaffold_13	starts_in_intron	8517947	8517947	+	asmbl_11119	none	Trinity_GG_8862_c0_g1_i2	1	STRG.16113.1,blat.proc3829879.chain_860	2
scaffold_18	alternate_exon	7948314	7948431	-	asmbl_20026,asmbl_20029	none	STRG.21484.2,STRG.21484.4,blat.proc3829897.chain_2318	3	STRG.21484.3,blat.proc3829897.chain_2319	2
scaffold_15	spliced_intron	4493750	4493846	+	asmbl_14083,asmbl_14084,asmbl_14085,asmbl_14089	none	STRG.18165.1,blat.proc3829879.chain_2746,blat.proc3829879.chain_2747,blat.proc3829879.chain_2748,blat.proc3829879.chain_2749	5	STRG.18165.2,blat.proc3829879.chain_2750	2
scaffold_21	ends_in_intron	2628759	2628759	+	asmbl_28439	none	blat.proc3829883.chain_1046	1	STRG.23884.1,blat.proc3829883.chain_1045	2
scaffold_26	retained_intron	3673200	3673300	+	asmbl_35341	none	Trinity_GG_15479_c1_g1_i2,blat.proc3829885.chain_1031	2	STRG.28032.1,blat.proc3829885.chain_1029,blat.proc3829885.chain_1030,blat.proc3829885.chain_1032,blat.proc3829885.chain_1033	5
scaffold_6	ends_in_intron	5053143	5053143	-	asmbl_48330,asmbl_48331,asmbl_48332	none	blat.proc3829889.chain_3505,blat.proc3829889.chain_3506,blat.proc3829889.chain_3508,blat.proc3829889.chain_3509	4	STRG.7479.1	1
scaffold_9	spliced_intron	6240560	6240600	-	asmbl_55009	none	STRG.11151.1,blat.proc3829891.chain_3266	2	Trinity_GG_23172_c0_g1_i2,blat.proc3829891.chain_3267	2
scaffold_20	starts_in_intron	11949857	11949857	-	asmbl_27133	none	STRG.23687.2	1	blat.proc3829899.chain_603,blat.proc3829899.chain_605,blat.proc3829899.chain_606	3
scaffold_7	retained_intron	2852620	2854421	-	asmbl_49585	none	STRG.8705.2,Trinity_GG_21976_c0_g1_i1,Trinity_GG_21976_c1_g1_i1,blat.proc3829891.chain_1058	4	STRG.8705.3,STRG.8705.4,blat.proc3829891.chain_1060	3
scaffold_16	retained_intron	10447527	10449544	+	asmbl_17336	none	STRG.19602.3,Trinity_GG_10708_c1_g1_i1,blat.proc3829881.chain_426,blat.proc3829881.chain_427	4	STRG.19602.4	1
scaffold_18	spliced_intron	12603092	12603275	-	asmbl_20183	none	STRG.21710.2,blat.proc3829897.chain_2530	2	STRG.21710.1,blat.proc3829897.chain_2531	2
scaffold_5	spliced_intron	9085614	9085705	+	asmbl_44259,asmbl_44262,asmbl_44264,asmbl_44265,asmbl_44266,asmbl_44267,asmbl_44268,asmbl_44269,asmbl_44270,asmbl_44271	none	STRG.6237.1,STRG.6237.2,STRG.6237.3,STRG.6237.4,STRG.6237.5,blat.proc3829873.chain_2418,blat.proc3829873.chain_2419,blat.proc3829873.chain_2422,blat.proc3829873.chain_2423,blat.proc3829873.chain_2424,blat.proc3829873.chain_2426	11	blat.proc3829873.chain_2421	1
scaffold_3	alternate_exon	5683194	5683268	-	asmbl_38810	none	STRG.3230.1,Trinity_GG_18771_c0_g1_i2,blat.proc3829887.chain_2978	3	STRG.3230.2,blat.proc3829887.chain_2977	2
scaffold_2	retained_intron	946894	947803	+	asmbl_24187,asmbl_24189	none	STRG.1574.1,STRG.1574.3,blat.proc3829871.chain_1645	3	STRG.1574.2,blat.proc3829871.chain_1649	2
scaffold_21	spliced_intron	1151006	1151165	+	asmbl_28350	none	STRG.23774.2,Trinity_GG_13181_c0_g1_i2,blat.proc3829883.chain_940	3	STRG.23774.1,blat.proc3829883.chain_939	2
scaffold_27	retained_exon	2816041	2816073	+	asmbl_36075,asmbl_36079	none	STRG.28742.2,blat.proc3829885.chain_1801,blat.proc3829885.chain_1802	3	STRG.28742.1,STRG.28742.3,STRG.28742.4,blat.proc3829885.chain_1799,blat.proc3829885.chain_1803	5
scaffold_6	spliced_intron	12991556	12992335	-	asmbl_48794,asmbl_48796	none	STRG.8061.1,blat.proc3829891.chain_260,blat.proc3829891.chain_272	3	STRG.8061.2,blat.proc3829891.chain_262,blat.proc3829891.chain_263,blat.proc3829891.chain_271	4
scaffold_1	spliced_intron	8733191	8733283	-	asmbl_488,asmbl_489,asmbl_490	none	STRG.574.1,blat.proc3829887.chain_481,blat.proc3829887.chain_482,blat.proc3829887.chain_484	4	blat.proc3829887.chain_483	1
scaffold_14	spliced_intron	3588641	3588755	+	asmbl_11927	none	STRG.16927.3	1	STRG.16927.1,STRG.16927.4,blat.proc3829879.chain_1656	3
scaffold_10	alt_acceptor	17502975	17502976	+	asmbl_5054	none	STRG.13190.1,Trinity_GG_7218_c0_g1_i1,blat.proc3829877.chain_1646	3	STRG.13190.2	1
scaffold_3	ends_in_intron	78639	78639	+	asmbl_39762	none	Trinity_GG_1653_c0_g1_i1	1	STRG.2889.1,Trinity_GG_1653_c0_g1_i2	2
scaffold_1	retained_intron	12754530	12756067	+	asmbl_2237	none	STRG.893.1,Trinity_GG_528_c0_g1_i3,blat.proc3829871.chain_952	3	STRG.893.2	1
scaffold_19	alt_acceptor	12822816	12822817	-	asmbl_21756,asmbl_21757,asmbl_21759,asmbl_21760,asmbl_21764	none	STRG.22593.1,STRG.22593.2,STRG.22593.3,blat.proc3829897.chain_3274,blat.proc3829897.chain_3275,blat.proc3829897.chain_3278,blat.proc3829897.chain_3279	7	blat.proc3829897.chain_3280	1
scaffold_1	retained_intron	11687601	11687763	+	asmbl_2115	none	STRG.779.2,blat.proc3829871.chain_836	2	STRG.779.1,blat.proc3829871.chain_835,blat.proc3829871.chain_837	3
scaffold_10	alt_acceptor	1621529	1621530	+	asmbl_4234	none	STRG.12018.1,Trinity_GG_6672_c1_g1_i2,blat.proc3829877.chain_697	3	STRG.12018.2,STRG.12018.3,STRG.12018.4,Trinity_GG_6672_c1_g1_i1,Trinity_GG_6672_c1_g1_i3,blat.proc3829877.chain_698,blat.proc3829877.chain_699	7
scaffold_11	alternate_exon	14179465	14181181	-	asmbl_7137	none	STRG.14227.1,blat.proc3829893.chain_2617	2	STRG.14227.2,blat.proc3829893.chain_2618	2
scaffold_7	skipped_exon	10299648	10301691	+	asmbl_50990	none	STRG.9199.1,blat.proc3829875.chain_1639	2	STRG.9199.2,blat.proc3829875.chain_1640	2
scaffold_21	alt_acceptor	6489370	6489371	+	asmbl_28671	none	STRG.24157.1,blat.proc3829883.chain_1313	2	STRG.24157.2,STRG.24157.3,blat.proc3829883.chain_1311	3
scaffold_12	alt_donor	9972920	9972921	-	asmbl_7832	none	STRG.14954.2,Trinity_GG_25333_c0_g1_i6,blat.proc3829893.chain_3317	3	STRG.14954.1,Trinity_GG_25333_c0_g1_i3,blat.proc3829893.chain_3318	3
scaffold_14	starts_in_intron	9500795	9500795	+	asmbl_12270	none	Trinity_GG_9540_c1_g1_i1,blat.proc3829879.chain_2058	2	STRG.17327.1,STRG.17327.2,Trinity_GG_9540_c1_g1_i2,blat.proc3829879.chain_2059	4
scaffold_20	retained_exon	10314450	10314503	+	asmbl_26099	none	STRG.23562.1,blat.proc3829883.chain_679,blat.proc3829883.chain_682	3	blat.proc3829883.chain_680,blat.proc3829883.chain_681	2
scaffold_4	alt_acceptor	6343095	6343096	+	asmbl_42734	none	STRG.4503.2	1	STRG.4503.1,blat.proc3829873.chain_819	2
scaffold_19	spliced_intron	10302844	10303671	+	asmbl_22448	none	STRG.22402.4,Trinity_GG_12396_c0_g1_i3,blat.proc3829881.chain_3352	3	STRG.22402.2,blat.proc3829881.chain_3353	2
scaffold_11	ends_in_intron	8597360	8597360	+	asmbl_5772	none	blat.proc3829877.chain_2377	1	STRG.13863.2,STRG.13863.3,blat.proc3829877.chain_2376	3
scaffold_7	alt_acceptor	9857491	9857492	-	asmbl_49903	none	STRG.9178.2,blat.proc3829891.chain_1420	2	STRG.9178.1,blat.proc3829891.chain_1417,blat.proc3829891.chain_1418,blat.proc3829891.chain_1419	4
scaffold_26	retained_exon	9089966	9090704	-	asmbl_35039,asmbl_35040,asmbl_35042	none	STRG.28455.1,STRG.28455.2,blat.proc3829901.chain_1604,blat.proc3829901.chain_1605	4	STRG.28455.3	1
scaffold_6	spliced_intron	7935430	7936138	-	asmbl_48445,asmbl_48447,asmbl_48448,asmbl_48449,asmbl_48452,asmbl_48453	none	STRG.7666.1,STRG.7666.3,STRG.7666.4,blat.proc3829889.chain_3701,blat.proc3829889.chain_3703,blat.proc3829889.chain_3704,blat.proc3829889.chain_3705	7	STRG.7666.2,blat.proc3829889.chain_3702,blat.proc3829889.chain_3706	3
scaffold_13	starts_in_intron	397121	397121	-	asmbl_9304	none	blat.proc3829895.chain_234	1	STRG.15428.1,STRG.15428.2,STRG.15428.3,Trinity_GG_25691_c0_g1_i10,Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i25,Trinity_GG_25691_c0_g1_i7,Trinity_GG_25691_c0_g1_i8,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_221,blat.proc3829895.chain_223,blat.proc3829895.chain_224,blat.proc3829895.chain_226,blat.proc3829895.chain_228,blat.proc3829895.chain_229,blat.proc3829895.chain_230,blat.proc3829895.chain_232,blat.proc3829895.chain_233	21
scaffold_1	spliced_intron	7370071	7370112	-	asmbl_443	none	STRG.517.3	1	STRG.517.1,STRG.517.4,Trinity_GG_17298_c0_g1_i1,blat.proc3829887.chain_413	4
scaffold_23	alt_donor	7279355	7279356	-	asmbl_31744	none	STRG.26034.2	1	STRG.26034.3	1
scaffold_20	retained_intron	9826506	9826707	-	asmbl_26984	none	blat.proc3829899.chain_527	1	STRG.23515.1,STRG.23515.2,blat.proc3829899.chain_528,blat.proc3829899.chain_529,blat.proc3829899.chain_530	5
scaffold_25	starts_in_intron	3292331	3292331	-	asmbl_34108	none	STRG.27260.2	1	STRG.27260.1,STRG.27260.3,STRG.27260.4,blat.proc3829901.chain_581	4
scaffold_16	retained_intron	810291	810378	-	asmbl_16079,asmbl_16082,asmbl_16083	none	STRG.19052.4,blat.proc3829895.chain_3746,blat.proc3829895.chain_3748	3	STRG.19052.1,STRG.19052.2,STRG.19052.3,blat.proc3829895.chain_3747,blat.proc3829895.chain_3749	5
scaffold_4	spliced_intron	16311395	16311679	-	asmbl_41900,asmbl_41901	none	STRG.5204.1,blat.proc3829889.chain_1229,blat.proc3829889.chain_1231	3	blat.proc3829889.chain_1230	1
scaffold_13	spliced_intron	7085089	7085351	-	asmbl_9807	none	STRG.16000.1,blat.proc3829895.chain_774	2	blat.proc3829895.chain_773	1
scaffold_26	ends_in_intron	37410	37410	-	asmbl_34642	none	Trinity_GG_32598_c0_g1_i1,blat.proc3829901.chain_1089	2	STRG.27818.1,blat.proc3829901.chain_1090	2
scaffold_17	skipped_exon	8220293	8221539	+	asmbl_18077,asmbl_18078,asmbl_18082,asmbl_18086	none	STRG.20435.1,STRG.20435.2,blat.proc3829881.chain_1196,blat.proc3829881.chain_1198,blat.proc3829881.chain_1200	5	blat.proc3829881.chain_1199,blat.proc3829881.chain_1203	2
scaffold_4	retained_intron	4103311	4103635	+	asmbl_42556	none	Trinity_GG_2393_c0_g1_i1,blat.proc3829873.chain_653,blat.proc3829873.chain_654,blat.proc3829873.chain_658	4	STRG.4315.1	1
scaffold_5	starts_in_intron	18263727	18263727	+	asmbl_44897	none	blat.proc3829873.chain_3107	1	STRG.6959.1,STRG.6959.2,blat.proc3829873.chain_3103,blat.proc3829873.chain_3105,blat.proc3829873.chain_3109	5
scaffold_13	starts_in_intron	6740453	6740453	+	asmbl_10954	none	Trinity_GG_8755_c0_g1_i2,blat.proc3829879.chain_622	2	STRG.15942.1	1
scaffold_3	alternate_exon	6655641	6659746	+	asmbl_40062,asmbl_40063,asmbl_40064,asmbl_40065,asmbl_40067,asmbl_40070	none	STRG.3290.1,STRG.3290.2,Trinity_GG_1861_c0_g1_i14,blat.proc3829871.chain_3460,blat.proc3829871.chain_3461,blat.proc3829871.chain_3464,blat.proc3829871.chain_3465,blat.proc3829871.chain_3466,blat.proc3829871.chain_3467,blat.proc3829871.chain_3469,blat.proc3829871.chain_3470	11	blat.proc3829871.chain_3457	1
scaffold_10	spliced_intron	5740585	5740787	-	asmbl_3296,asmbl_3297,asmbl_3298,asmbl_3300	none	STRG.12399.1,STRG.12399.2,STRG.12399.3,blat.proc3829893.chain_836,blat.proc3829893.chain_838,blat.proc3829893.chain_839,blat.proc3829893.chain_840	7	blat.proc3829893.chain_837	1
scaffold_8	retained_exon	4871128	4871175	+	asmbl_51857,asmbl_51858	none	STRG.9943.2,STRG.9943.3,blat.proc3829875.chain_2420,blat.proc3829875.chain_2422	4	STRG.9943.1,STRG.9943.4,blat.proc3829875.chain_2421,blat.proc3829875.chain_2423,blat.proc3829875.chain_2425	5
scaffold_25	alt_acceptor	3585911	3585912	+	asmbl_33427	none	STRG.27284.2	1	STRG.27284.1,blat.proc3829885.chain_316	2
scaffold_3	alternate_exon	1448061	1448072	+	asmbl_39803	none	blat.proc3829871.chain_3048	1	STRG.2961.1,blat.proc3829871.chain_3047	2
scaffold_23	alternate_exon	7658152	7664155	+	asmbl_31002	none	blat.proc3829883.chain_2933	1	blat.proc3829883.chain_2934	1
scaffold_7	alt_acceptor	5916762	5916763	-	asmbl_49713,asmbl_49717	none	STRG.8887.3,blat.proc3829891.chain_1163,blat.proc3829891.chain_1164	3	STRG.8887.1,STRG.8887.4,blat.proc3829891.chain_1165	3
scaffold_26	retained_intron	9426206	9426291	-	asmbl_35051	none	Trinity_GG_32923_c0_g1_i1	1	STRG.28472.1	1
scaffold_24	alt_acceptor	7350455	7350456	-	asmbl_33018	none	STRG.26770.2	1	STRG.26770.1,blat.proc3829901.chain_50	2
scaffold_9	retained_intron	17548809	17549033	-	asmbl_55618	none	STRG.11834.1,Trinity_GG_23559_c0_g1_i1,blat.proc3829893.chain_226	3	STRG.11834.2	1
scaffold_7	ends_in_intron	13018775	13018775	-	asmbl_50100	none	blat.proc3829891.chain_1655	1	STRG.9408.1	1
scaffold_7	alternate_exon	7191813	7191925	+	asmbl_50792	none	STRG.8971.2,blat.proc3829875.chain_1418	2	STRG.8971.1,blat.proc3829875.chain_1417	2
scaffold_18	alternate_exon	4404950	4404967	-	asmbl_19839	none	STRG.21217.1	1	STRG.21217.2	1
scaffold_2	alt_acceptor	9889779	9889780	-	asmbl_23414,asmbl_23416	none	STRG.2191.1,blat.proc3829887.chain_2073,blat.proc3829887.chain_2075	3	blat.proc3829887.chain_2074	1
scaffold_4	alt_donor	6282536	6282537	-	asmbl_41411	none	Trinity_GG_19560_c0_g1_i2,blat.proc3829889.chain_665	2	Trinity_GG_19560_c0_g1_i3,blat.proc3829889.chain_664	2
scaffold_3	retained_intron	16006545	16006633	-	asmbl_39419	none	Trinity_GG_19148_c0_g1_i3,blat.proc3829887.chain_3671	2	STRG.3874.1,blat.proc3829887.chain_3673	2
scaffold_5	retained_intron	2673418	2674638	-	asmbl_45281,asmbl_45283,asmbl_45285	none	STRG.5790.1,STRG.5790.3,STRG.5790.5,blat.proc3829889.chain_1875,blat.proc3829889.chain_1876	5	STRG.5790.6,blat.proc3829889.chain_1872,blat.proc3829889.chain_1873	3
scaffold_24	retained_intron	1452917	1452990	+	asmbl_32086	none	STRG.26386.2,blat.proc3829883.chain_3328	2	STRG.26386.1	1
scaffold_7	alt_acceptor	12840661	12840662	-	asmbl_50083,asmbl_50084	none	STRG.9389.2,STRG.9389.3,Trinity_GG_22234_c0_g1_i1,blat.proc3829891.chain_1502,blat.proc3829891.chain_1503	5	STRG.9389.4,blat.proc3829891.chain_1501	2
scaffold_7	ends_in_intron	1219414	1219414	+	asmbl_50462	none	Trinity_GG_4734_c0_g1_i1,blat.proc3829875.chain_1021	2	STRG.8618.1,STRG.8618.2,Trinity_GG_4734_c0_g1_i2,Trinity_GG_4734_c0_g1_i4	4
scaffold_4	alt_donor	16609578	16609579	-	asmbl_41953	none	STRG.5239.1,blat.proc3829889.chain_1239	2	STRG.5239.2,Trinity_GG_19911_c0_g1_i1,blat.proc3829889.chain_1238	3
scaffold_28	alternate_exon	9268391	9268493	+	asmbl_38472	none	STRG.29948.1,Trinity_GG_16535_c0_g1_i2,blat.proc3829885.chain_2951	3	STRG.29948.3,Trinity_GG_16535_c0_g1_i1,blat.proc3829885.chain_2950	3
scaffold_15	retained_exon	6888189	6888245	-	asmbl_15276,asmbl_15278,asmbl_15279,asmbl_15280,asmbl_15281,asmbl_15282,asmbl_15283,asmbl_15286,asmbl_15287	none	STRG.18290.1,STRG.18290.2,STRG.18290.3,STRG.18290.6,blat.proc3829895.chain_2933,blat.proc3829895.chain_2934,blat.proc3829895.chain_2936,blat.proc3829895.chain_2937,blat.proc3829895.chain_2939,blat.proc3829895.chain_2940,blat.proc3829895.chain_2942	11	STRG.18290.5	1
scaffold_24	starts_in_intron	5936175	5936175	+	asmbl_32278,asmbl_32279	none	blat.proc3829883.chain_3537,blat.proc3829883.chain_3542	2	STRG.26645.1,blat.proc3829883.chain_3535,blat.proc3829883.chain_3543,blat.proc3829883.chain_3545,blat.proc3829883.chain_3547,blat.proc3829883.chain_3548	6
scaffold_1	retained_intron	5739912	5740071	+	asmbl_1766	none	Trinity_GG_223_c1_g1_i1,blat.proc3829871.chain_377	2	STRG.382.2,blat.proc3829871.chain_370,blat.proc3829871.chain_371,blat.proc3829871.chain_372,blat.proc3829871.chain_373,blat.proc3829871.chain_375	6
scaffold_14	alt_acceptor	3154563	3154564	+	asmbl_11891,asmbl_11892,asmbl_11898	none	STRG.16893.2,blat.proc3829879.chain_1637,blat.proc3829879.chain_1639	3	STRG.16893.1,STRG.16893.3,blat.proc3829879.chain_1625,blat.proc3829879.chain_1626,blat.proc3829879.chain_1628,blat.proc3829879.chain_1629,blat.proc3829879.chain_1630,blat.proc3829879.chain_1631,blat.proc3829879.chain_1632,blat.proc3829879.chain_1634,blat.proc3829879.chain_1635,blat.proc3829879.chain_1636,blat.proc3829879.chain_1638	13
scaffold_7	alt_acceptor	15247396	15247397	+	asmbl_51305	none	blat.proc3829875.chain_2041	1	STRG.9529.3,blat.proc3829875.chain_2038	2
scaffold_20	alt_donor	11573193	11573194	-	asmbl_27082,asmbl_27084,asmbl_27085	none	STRG.23650.2,STRG.23650.3,STRG.23650.4,blat.proc3829899.chain_597	4	STRG.23650.1,blat.proc3829899.chain_596	2
scaffold_21	alt_donor	7485717	7485718	-	asmbl_27842	none	STRG.24264.1,blat.proc3829899.chain_1336	2	STRG.24264.2	1
scaffold_3	alt_acceptor	17109994	17109995	+	asmbl_40609	none	STRG.3957.3	1	STRG.3957.1,STRG.3957.2,STRG.3957.4	3
scaffold_13	retained_intron	5802919	5803440	+	asmbl_10886	none	blat.proc3829879.chain_649	1	STRG.15880.1,STRG.15880.2,STRG.15880.3,STRG.15880.4,blat.proc3829879.chain_647,blat.proc3829879.chain_648	6
scaffold_8	starts_in_intron	13144398	13144398	-	asmbl_53276	none	STRG.10480.3,blat.proc3829891.chain_2632	2	blat.proc3829891.chain_2628,blat.proc3829891.chain_2629,blat.proc3829891.chain_2630,blat.proc3829891.chain_2631	4
scaffold_3	retained_exon	10275025	10275117	+	asmbl_40206,asmbl_40209,asmbl_40212	none	STRG.3461.1,STRG.3461.3,STRG.3461.4,blat.proc3829871.chain_3621,blat.proc3829871.chain_3622	5	STRG.3461.2,blat.proc3829871.chain_3625	2
scaffold_6	spliced_intron	7174170	7174368	+	asmbl_46988,asmbl_46989,asmbl_46990,asmbl_46991,asmbl_46992,asmbl_46993	none	STRG.7621.1,STRG.7621.2,STRG.7621.3,STRG.7621.4,blat.proc3829873.chain_3736,blat.proc3829873.chain_3739	6	blat.proc3829873.chain_3737	1
scaffold_17	alternate_exon	9974395	9974587	+	asmbl_18268,asmbl_18269	none	STRG.20603.2,STRG.20603.3	2	blat.proc3829881.chain_1444	1
scaffold_12	ends_in_intron	7965950	7965950	+	asmbl_8773	none	Trinity_GG_8212_c0_g1_i4	1	STRG.14847.1,blat.proc3829877.chain_3358	2
scaffold_19	retained_exon	4792848	4792986	-	asmbl_21337	none	STRG.22043.2,Trinity_GG_29309_c0_g1_i1,blat.proc3829897.chain_2803	3	STRG.22043.1,Trinity_GG_29309_c0_g1_i2,blat.proc3829897.chain_2802	3
scaffold_4	retained_intron	7346985	7347256	-	asmbl_41449	none	Trinity_GG_19555_c0_g1_i1,blat.proc3829889.chain_654	2	STRG.4564.1,blat.proc3829889.chain_655	2
scaffold_8	spliced_intron	10059557	10059771	-	asmbl_53093	none	STRG.10258.1,blat.proc3829891.chain_2380	2	blat.proc3829891.chain_2382	1
scaffold_1	retained_intron	14305214	14305639	+	asmbl_2355	none	blat.proc3829871.chain_1135	1	STRG.1018.1,blat.proc3829871.chain_1134	2
scaffold_4	alt_donor	10954917	10954918	+	asmbl_43019,asmbl_43020,asmbl_43023	none	STRG.4816.1,STRG.4816.2,blat.proc3829873.chain_1190,blat.proc3829873.chain_1191	4	blat.proc3829873.chain_1192	1
scaffold_24	alt_acceptor	8643417	8643418	+	asmbl_32437	none	STRG.26855.2	1	STRG.26855.1,blat.proc3829883.chain_3731	2
scaffold_9	retained_intron	8180390	8180907	+	asmbl_54145,asmbl_54146	none	STRG.11240.1,Trinity_GG_6281_c0_g1_i4,blat.proc3829877.chain_10,blat.proc3829877.chain_12	4	blat.proc3829877.chain_11	1
scaffold_27	alternate_exon	9094542	9098453	-	asmbl_37079	none	STRG.29150.1,blat.proc3829901.chain_2219	2	STRG.29150.2,Trinity_GG_33295_c0_g1_i3,blat.proc3829901.chain_2218	3
scaffold_22	alt_donor	5818114	5818115	-	asmbl_30052	none	STRG.24914.1	1	STRG.24914.2	1
scaffold_3	skipped_exon	14774411	14775606	-	asmbl_39372	none	STRG.3820.3	1	STRG.3820.1,blat.proc3829887.chain_3625	2
scaffold_15	alt_donor	1505130	1505131	-	asmbl_14967	none	STRG.17945.1,blat.proc3829895.chain_2662	2	STRG.17945.2,blat.proc3829895.chain_2658,blat.proc3829895.chain_2661	3
scaffold_17	starts_in_intron	3427745	3427745	+	asmbl_17853	none	Trinity_GG_11026_c0_g1_i2,blat.proc3829881.chain_947	2	STRG.20109.1,blat.proc3829881.chain_948	2
scaffold_4	alt_donor	17109178	17109179	+	asmbl_43376	none	Trinity_GG_2943_c0_g1_i1	1	STRG.5308.1,STRG.5308.2,STRG.5308.3,STRG.5308.4,blat.proc3829873.chain_1583,blat.proc3829873.chain_1587,blat.proc3829873.chain_1588	7
scaffold_3	spliced_intron	10607348	10607574	-	asmbl_39053,asmbl_39055	none	STRG.3497.1,STRG.3497.2,blat.proc3829887.chain_3201,blat.proc3829887.chain_3202	4	STRG.3497.3,blat.proc3829887.chain_3203	2
scaffold_5	alternate_exon	12543407	12543441	-	asmbl_45845	none	STRG.6491.2,blat.proc3829889.chain_2576	2	STRG.6491.1,STRG.6491.3,blat.proc3829889.chain_2575	3
scaffold_18	ends_in_intron	4849478	4849478	+	asmbl_20603	none	blat.proc3829881.chain_2172	1	STRG.21267.1,STRG.21267.2,STRG.21267.3,Trinity_GG_11716_c0_g1_i1,Trinity_GG_11716_c0_g1_i2,Trinity_GG_11716_c0_g1_i6,Trinity_GG_11716_c0_g1_i7,blat.proc3829881.chain_2169,blat.proc3829881.chain_2170,blat.proc3829881.chain_2173,blat.proc3829881.chain_2174	11
scaffold_23	alt_acceptor	7686482	7686483	+	asmbl_31011,asmbl_31014	none	STRG.26063.3,Trinity_GG_14406_c0_g1_i1,blat.proc3829883.chain_2979	3	STRG.26063.1,STRG.26063.6,Trinity_GG_14406_c0_g1_i3,Trinity_GG_14406_c0_g1_i6,blat.proc3829883.chain_2977,blat.proc3829883.chain_2981	6
scaffold_11	alternate_exon	7749541	7749730	+	asmbl_5645	none	STRG.13769.2	1	STRG.13769.1,Trinity_GG_7575_c0_g1_i1,blat.proc3829877.chain_2237	3
scaffold_14	starts_in_intron	5886607	5886607	-	asmbl_13079	none	blat.proc3829895.chain_1668	1	STRG.17034.1,blat.proc3829895.chain_1669	2
scaffold_2	alternate_exon	5074042	5074086	-	asmbl_23151	none	STRG.1922.3	1	STRG.1922.2,STRG.1922.4,blat.proc3829887.chain_1822	3
scaffold_11	retained_intron	11999468	11999662	-	asmbl_7037	none	STRG.14111.3,Trinity_GG_24898_c0_g1_i3,blat.proc3829893.chain_2515	3	STRG.14111.1,Trinity_GG_24898_c0_g1_i4	2
scaffold_18	ends_in_intron	5910178	5910178	-	asmbl_19916	none	Trinity_GG_28949_c1_g1_i1,blat.proc3829897.chain_2178	2	blat.proc3829897.chain_2177	1
scaffold_5	ends_in_intron	10170363	10170363	+	asmbl_44332	none	Trinity_GG_3401_c1_g1_i2,blat.proc3829873.chain_2379	2	STRG.6310.1,blat.proc3829873.chain_2380	2
scaffold_7	ends_in_intron	9665920	9665920	+	asmbl_50969	none	blat.proc3829875.chain_1621	1	STRG.9142.1,blat.proc3829875.chain_1620	2
scaffold_27	alt_acceptor	3903535	3903536	-	asmbl_36882	none	STRG.28839.2	1	STRG.28839.1,blat.proc3829901.chain_1958	2
scaffold_3	spliced_intron	4282597	4282658	+	asmbl_39954	none	STRG.3120.2	1	STRG.3120.1	1
scaffold_14	retained_intron	11792025	11792322	-	asmbl_13520	none	STRG.17514.1,Trinity_GG_26836_c1_g1_i1,blat.proc3829895.chain_2232	3	STRG.17514.2,blat.proc3829895.chain_2231	2
scaffold_4	alt_donor	10129511	10129512	-	asmbl_41576	none	STRG.4778.1,blat.proc3829889.chain_789	2	blat.proc3829889.chain_788	1
scaffold_26	starts_in_intron	7487618	7487618	+	asmbl_35645,asmbl_35646	none	Trinity_GG_15686_c0_g1_i3,blat.proc3829885.chain_1379,blat.proc3829885.chain_1381	3	STRG.28365.1,STRG.28365.2,STRG.28365.3,blat.proc3829885.chain_1380	4
scaffold_14	alt_donor	15565487	15565488	+	asmbl_12608	none	STRG.17784.3	1	STRG.17784.2,blat.proc3829879.chain_2468	2
scaffold_17	alt_acceptor	4745013	4745014	+	asmbl_17921	none	STRG.20196.1,Trinity_GG_11035_c0_g1_i1,blat.proc3829881.chain_960	3	STRG.20196.2	1
scaffold_23	starts_in_intron	7703588	7703588	+	asmbl_31022	none	blat.proc3829883.chain_2958	1	STRG.26068.1,STRG.26068.2	2
scaffold_5	skipped_exon	821102	823496	+	asmbl_43767	none	STRG.5632.3	1	STRG.5632.1,STRG.5632.2	2
scaffold_5	starts_in_intron	14132900	14132900	+	asmbl_44577	none	Trinity_GG_3576_c0_g1_i2,blat.proc3829873.chain_2688	2	STRG.6613.1,blat.proc3829873.chain_2689	2
scaffold_12	alt_donor	1205437	1205438	-	asmbl_7430	none	blat.proc3829877.chain_2944	1	STRG.14443.1	1
scaffold_5	ends_in_intron	7315585	7315585	+	asmbl_44147	none	blat.proc3829873.chain_2270	1	STRG.6118.1,STRG.6118.2,blat.proc3829873.chain_2271	3
scaffold_9	alt_acceptor	8583839	8583840	+	asmbl_54165	none	STRG.11257.1	1	STRG.11257.3	1
scaffold_7	alt_acceptor	8077833	8077834	-	asmbl_49798	none	STRG.9036.2	1	STRG.9036.1,blat.proc3829891.chain_1309	2
scaffold_16	alt_donor	5959143	5959144	+	asmbl_17040	none	Trinity_GG_10571_c1_g1_i2,blat.proc3829881.chain_166,blat.proc3829881.chain_167	3	STRG.19319.2,STRG.19319.3	2
scaffold_28	spliced_intron	3168895	3169011	+	asmbl_38146	none	Trinity_GG_16320_c0_g1_i2,blat.proc3829885.chain_2537	2	STRG.29506.1,STRG.29506.2,Trinity_GG_16320_c0_g1_i1,blat.proc3829885.chain_2536	4
scaffold_23	retained_exon	2728666	2728728	+	asmbl_30724	none	STRG.25724.1,blat.proc3829883.chain_2629	2	STRG.25724.2,blat.proc3829883.chain_2628	2
scaffold_13	retained_intron	7217234	7217677	+	asmbl_11012,asmbl_11013	none	blat.proc3829879.chain_693,blat.proc3829879.chain_700	2	STRG.16002.1,blat.proc3829879.chain_695,blat.proc3829879.chain_696,blat.proc3829879.chain_698,blat.proc3829879.chain_701	5
scaffold_4	retained_exon	10472211	10472318	+	asmbl_42999	none	STRG.4802.1,blat.proc3829873.chain_1098	2	STRG.4802.2	1
scaffold_5	alt_acceptor	15044203	15044204	-	asmbl_46019	none	STRG.6692.4	1	STRG.6692.3,STRG.6692.6,Trinity_GG_20768_c0_g2_i1,blat.proc3829889.chain_2744	4
scaffold_11	alt_acceptor	8790267	8790268	-	asmbl_6860	none	STRG.13891.2	1	STRG.13891.3	1
scaffold_14	retained_intron	4780275	4781266	-	asmbl_13052,asmbl_13053,asmbl_13055	none	STRG.16995.3,STRG.16995.4,blat.proc3829895.chain_1702	3	STRG.16995.1,STRG.16995.2,blat.proc3829895.chain_1703	3
scaffold_19	retained_intron	11168462	11168662	+	asmbl_22475	none	blat.proc3829881.chain_3332	1	STRG.22441.1,blat.proc3829881.chain_3333,blat.proc3829881.chain_3334,blat.proc3829881.chain_3335	4
scaffold_6	retained_intron	1497143	1498676	+	asmbl_46663	none	STRG.7184.1,Trinity_GG_3973_c0_g1_i1,Trinity_GG_3973_c1_g1_i2,blat.proc3829873.chain_3354,blat.proc3829873.chain_3355	5	STRG.7184.2,blat.proc3829873.chain_3356	2
scaffold_8	skipped_exon	2850138	2851267	-	asmbl_52710,asmbl_52713	none	STRG.9800.1,blat.proc3829891.chain_1947,blat.proc3829891.chain_1948	3	STRG.9800.2,blat.proc3829891.chain_1949	2
scaffold_4	ends_in_intron	17115401	17115401	+	asmbl_43377	none	Trinity_GG_2943_c0_g1_i5	1	STRG.5308.1,STRG.5308.3,Trinity_GG_2943_c0_g1_i1,blat.proc3829873.chain_1585,blat.proc3829873.chain_1588	5
scaffold_18	skipped_exon	3915974	3917888	-	asmbl_19824	none	STRG.21192.4	1	STRG.21192.2,STRG.21192.3,STRG.21192.5,blat.proc3829897.chain_2089	4
scaffold_2	alternate_exon	18772423	18772553	+	asmbl_25282	none	STRG.2754.1	1	STRG.2754.2	1
scaffold_12	alt_acceptor	5463740	5463741	-	asmbl_7627,asmbl_7628,asmbl_7629,asmbl_7630	none	STRG.14690.1,STRG.14690.2,STRG.14690.3,STRG.14690.4,blat.proc3829893.chain_3103,blat.proc3829893.chain_3104,blat.proc3829893.chain_3105	7	STRG.14690.5	1
scaffold_4	spliced_intron	6949321	6949391	+	asmbl_42762,asmbl_42766,asmbl_42769	none	STRG.4536.1,blat.proc3829873.chain_899,blat.proc3829873.chain_901,blat.proc3829873.chain_903	4	STRG.4536.2,STRG.4536.3,Trinity_GG_2515_c0_g1_i3,Trinity_GG_2515_c0_g1_i6,Trinity_GG_2515_c0_g1_i7,blat.proc3829873.chain_900,blat.proc3829873.chain_902,blat.proc3829873.chain_904,blat.proc3829873.chain_905	9
scaffold_20	starts_in_intron	1624178	1624178	-	asmbl_26522	none	blat.proc3829897.chain_3655	1	STRG.22888.1,STRG.22888.2	2
scaffold_21	skipped_exon	833405	835515	+	asmbl_28332,asmbl_28335	none	STRG.23762.1,blat.proc3829883.chain_911,blat.proc3829883.chain_912	3	STRG.23762.2,blat.proc3829883.chain_910,blat.proc3829883.chain_913	3
scaffold_27	starts_in_intron	4527988	4527988	+	asmbl_36261	none	Trinity_GG_16027_c2_g1_i1,blat.proc3829885.chain_2081	2	STRG.28885.1,STRG.28885.2	2
scaffold_4	starts_in_intron	6941983	6941983	+	asmbl_42769,asmbl_42770	none	STRG.4536.2,blat.proc3829873.chain_901	2	STRG.4536.1,blat.proc3829873.chain_899,blat.proc3829873.chain_903,blat.proc3829873.chain_905	4
scaffold_17	ends_in_intron	8399101	8399101	-	asmbl_19142	none	Trinity_GG_28499_c0_g1_i1,blat.proc3829897.chain_1384	2	STRG.20450.2,Trinity_GG_28499_c0_g1_i2,blat.proc3829897.chain_1385	3
scaffold_28	alternate_exon	2437801	2437886	-	asmbl_37382	none	STRG.29399.1,blat.proc3829901.chain_2478	2	STRG.29399.2,blat.proc3829901.chain_2479	2
scaffold_13	retained_intron	9254392	9254501	+	asmbl_11171	none	Trinity_GG_8857_c1_g1_i3,blat.proc3829879.chain_847	2	STRG.16172.1,Trinity_GG_8857_c1_g1_i4,blat.proc3829879.chain_848	3
scaffold_9	alt_donor	2400474	2400475	-	asmbl_54833	none	STRG.10875.1	1	STRG.10875.2	1
scaffold_12	alt_acceptor	10617660	10617661	-	asmbl_7896,asmbl_7897	none	STRG.15030.1,STRG.15030.2,blat.proc3829893.chain_3382	3	STRG.15030.3	1
scaffold_27	alt_donor	628880	628881	-	asmbl_36654,asmbl_36655,asmbl_36657,asmbl_36659	none	STRG.28563.1,STRG.28563.3,STRG.28563.4,Trinity_GG_32986_c0_g1_i1,blat.proc3829901.chain_1752,blat.proc3829901.chain_1753,blat.proc3829901.chain_1754	7	STRG.28563.2,blat.proc3829901.chain_1749	2
scaffold_13	starts_in_intron	14156955	14156955	+	asmbl_11407	none	blat.proc3829879.chain_1233	1	STRG.16445.1,blat.proc3829879.chain_1234,blat.proc3829879.chain_1235	3
scaffold_12	retained_intron	11315720	11315814	-	asmbl_7926	none	Trinity_GG_25421_c0_g1_i2,blat.proc3829893.chain_3464	2	STRG.15052.1,blat.proc3829893.chain_3463	2
scaffold_18	spliced_intron	9259618	9260058	-	asmbl_20092,asmbl_20093,asmbl_20094,asmbl_20095	none	STRG.21559.1,STRG.21559.2,STRG.21559.3,STRG.21559.4,Trinity_GG_29070_c0_g1_i2,Trinity_GG_29070_c0_g1_i5,blat.proc3829897.chain_2410,blat.proc3829897.chain_2411	8	Trinity_GG_29070_c0_g1_i3,blat.proc3829897.chain_2413	2
scaffold_24	retained_intron	10479687	10479716	+	asmbl_32564,asmbl_32568	none	STRG.26999.3,blat.proc3829885.chain_115,blat.proc3829885.chain_116	3	STRG.26999.1,STRG.26999.2	2
scaffold_13	alt_donor	14563618	14563619	-	asmbl_10167,asmbl_10171	none	STRG.16497.2,blat.proc3829895.chain_1167	2	STRG.16497.1,STRG.16497.3,STRG.16497.4,STRG.16497.5,blat.proc3829895.chain_1172	5
scaffold_19	starts_in_intron	684589	684589	-	asmbl_21200	none	blat.proc3829897.chain_2618	1	STRG.21839.1,Trinity_GG_29199_c2_g1_i3,blat.proc3829897.chain_2617,blat.proc3829897.chain_2619	4
scaffold_1	spliced_intron	11687601	11687763	+	asmbl_2114	none	STRG.779.1,blat.proc3829871.chain_835,blat.proc3829871.chain_837	3	STRG.779.2,blat.proc3829871.chain_836	2
scaffold_14	alt_acceptor	12632053	12632054	-	asmbl_13574	none	STRG.17566.4	1	STRG.17566.1,STRG.17566.3,blat.proc3829895.chain_2326,blat.proc3829895.chain_2327,blat.proc3829895.chain_2329,blat.proc3829895.chain_2330,blat.proc3829895.chain_2331,blat.proc3829895.chain_2332,blat.proc3829895.chain_2333	9
scaffold_18	retained_exon	10005843	10005935	-	asmbl_20129	none	STRG.21580.1	1	STRG.21580.2	1
scaffold_13	starts_in_intron	7450744	7450744	+	asmbl_11040	none	blat.proc3829879.chain_756	1	STRG.16024.1,Trinity_GG_8814_c0_g1_i3,blat.proc3829879.chain_757,blat.proc3829879.chain_758	4
scaffold_25	retained_exon	5828682	5829053	-	asmbl_34267	none	STRG.27460.1	1	STRG.27460.2,Trinity_GG_32411_c0_g1_i11,blat.proc3829901.chain_798	3
scaffold_15	spliced_intron	11940228	11941598	-	asmbl_15555	none	STRG.18626.2,blat.proc3829895.chain_3337	2	blat.proc3829895.chain_3338	1
scaffold_22	retained_intron	4231499	4231806	-	asmbl_29988	none	blat.proc3829899.chain_1975	1	STRG.24838.1,blat.proc3829899.chain_1977	2
scaffold_25	alt_donor	4454636	4454637	-	asmbl_34173	none	STRG.27358.3	1	STRG.27358.2	1
scaffold_15	retained_exon	3918068	3918098	+	asmbl_14056	none	STRG.18133.1,Trinity_GG_9957_c1_g1_i1	2	STRG.18133.2	1
scaffold_7	retained_intron	817670	817822	+	asmbl_50447	none	blat.proc3829875.chain_972	1	STRG.8613.1,blat.proc3829875.chain_974	2
scaffold_6	retained_intron	14512780	14513103	-	asmbl_48947	none	Trinity_GG_21677_c0_g1_i2,blat.proc3829891.chain_522	2	STRG.8207.2	1
scaffold_18	spliced_intron	7629659	7631669	-	asmbl_20001	none	Trinity_GG_29021_c0_g1_i8,blat.proc3829897.chain_2311	2	STRG.21453.1,STRG.21453.5,blat.proc3829897.chain_2308,blat.proc3829897.chain_2309	4
scaffold_17	alt_acceptor	7101836	7101837	+	asmbl_18025	none	STRG.20368.1,blat.proc3829881.chain_1135	2	STRG.20368.2,blat.proc3829881.chain_1136	2
scaffold_12	alternate_exon	10611281	10611363	+	asmbl_8918	none	STRG.15029.1,blat.proc3829877.chain_3547	2	STRG.15029.2,STRG.15029.3,Trinity_GG_8309_c0_g1_i1,blat.proc3829877.chain_3546	4
scaffold_2	ends_in_intron	4443705	4443705	-	asmbl_23103	none	Trinity_GG_18064_c0_g1_i1,blat.proc3829887.chain_1739	2	STRG.1871.1,STRG.1871.2,blat.proc3829887.chain_1740	3
scaffold_12	spliced_intron	4617396	4617716	-	asmbl_7556,asmbl_7557,asmbl_7559	none	STRG.14627.1,STRG.14627.2,Trinity_GG_25175_c0_g1_i1,blat.proc3829893.chain_3029,blat.proc3829893.chain_3030,blat.proc3829893.chain_3031	6	Trinity_GG_25175_c1_g1_i1,blat.proc3829893.chain_3032	2
scaffold_5	ends_in_intron	1383542	1383542	+	asmbl_43789	none	STRG.5694.1	1	STRG.5694.2	1
scaffold_4	skipped_exon	13429773	13431110	+	asmbl_43127	none	STRG.4980.4	1	STRG.4980.1,STRG.4980.2,STRG.4980.3	3
scaffold_15	alternate_exon	12642560	12644069	-	asmbl_15612	none	STRG.18712.1,blat.proc3829895.chain_3461	2	STRG.18712.2	1
scaffold_22	starts_in_intron	4210631	4210631	+	asmbl_29267	none	Trinity_GG_13720_c0_g1_i2,blat.proc3829883.chain_1852	2	blat.proc3829883.chain_1851	1
scaffold_17	alt_acceptor	11035668	11035669	-	asmbl_19309	none	STRG.20653.2,STRG.20653.3,blat.proc3829897.chain_1607	3	STRG.20653.4	1
scaffold_4	starts_in_intron	9964958	9964958	-	asmbl_41571	none	blat.proc3829889.chain_823	1	STRG.4758.1,STRG.4758.2,blat.proc3829889.chain_822,blat.proc3829889.chain_824	4
scaffold_1	ends_in_intron	20757415	20757415	+	asmbl_2641	none	blat.proc3829871.chain_1473	1	STRG.1421.1,blat.proc3829871.chain_1476	2
scaffold_6	retained_intron	5084001	5084167	-	asmbl_48340	none	blat.proc3829889.chain_3542	1	STRG.7481.1,blat.proc3829889.chain_3541	2
scaffold_5	starts_in_intron	6290897	6290897	+	asmbl_44082	none	Trinity_GG_3287_c0_g1_i2,blat.proc3829873.chain_2166	2	STRG.6032.1,STRG.6032.2,Trinity_GG_3287_c0_g1_i1,blat.proc3829873.chain_2167	4
scaffold_17	skipped_exon	12221211	12223396	-	asmbl_19368	none	STRG.20749.2	1	STRG.20749.1,blat.proc3829897.chain_1685	2
scaffold_15	starts_in_intron	4116967	4116967	-	asmbl_15133	none	blat.proc3829895.chain_2827	1	STRG.18141.1,STRG.18141.2,STRG.18141.3,STRG.18141.4,Trinity_GG_27184_c0_g2_i1,blat.proc3829895.chain_2826,blat.proc3829895.chain_2828,blat.proc3829895.chain_2829,blat.proc3829895.chain_2830	9
scaffold_3	retained_intron	1531004	1531031	-	asmbl_38671	none	STRG.2976.1,Trinity_GG_18613_c0_g1_i1,blat.proc3829887.chain_2719	3	STRG.2976.2	1
scaffold_14	skipped_exon	8231446	8232235	-	asmbl_13245,asmbl_13246	none	STRG.17225.2,blat.proc3829895.chain_1919,blat.proc3829895.chain_1920	3	blat.proc3829895.chain_1921	1
scaffold_6	ends_in_intron	5260139	5260139	-	asmbl_48350	none	Trinity_GG_21252_c0_g2_i1,blat.proc3829889.chain_3552	2	STRG.7490.1,blat.proc3829889.chain_3551	2
scaffold_24	starts_in_intron	5384738	5384738	+	asmbl_32226	none	Trinity_GG_14657_c0_g1_i3,blat.proc3829883.chain_3414	2	STRG.26610.1,STRG.26610.2,blat.proc3829883.chain_3413,blat.proc3829883.chain_3415	4
scaffold_11	alternate_exon	8478185	8478294	+	asmbl_5750	none	Trinity_GG_7647_c0_g1_i3,blat.proc3829877.chain_2363	2	STRG.13851.1,Trinity_GG_7647_c0_g1_i4,Trinity_GG_7647_c0_g1_i5,blat.proc3829877.chain_2359,blat.proc3829877.chain_2362	5
scaffold_4	alt_donor	3528358	3528359	-	asmbl_41190	none	STRG.4277.3	1	STRG.4277.5	1
scaffold_1	spliced_intron	14182552	14182705	+	asmbl_2317	none	STRG.1000.1,blat.proc3829871.chain_1041	2	blat.proc3829871.chain_1040	1
scaffold_2	spliced_intron	7936735	7936885	+	asmbl_24634,asmbl_24635	none	STRG.2090.1,Trinity_GG_1149_c0_g1_i4,Trinity_GG_1149_c0_g1_i5,blat.proc3829871.chain_2100,blat.proc3829871.chain_2104	5	Trinity_GG_1149_c0_g2_i1,blat.proc3829871.chain_2106	2
scaffold_25	alt_donor	3086847	3086848	-	asmbl_34079,asmbl_34080,asmbl_34081,asmbl_34082	none	blat.proc3829901.chain_488,blat.proc3829901.chain_489,blat.proc3829901.chain_490,blat.proc3829901.chain_491	4	STRG.27230.1,STRG.27230.2,STRG.27230.3	3
scaffold_5	alt_acceptor	11602136	11602137	-	asmbl_45798	none	STRG.6413.1	1	STRG.6413.2	1
scaffold_22	starts_in_intron	10744673	10744673	-	asmbl_30389	none	Trinity_GG_31191_c0_g1_i1	1	STRG.25395.1,Trinity_GG_31191_c0_g1_i2,blat.proc3829899.chain_2441	3
scaffold_23	ends_in_intron	6021249	6021249	-	asmbl_31685	none	Trinity_GG_31509_c0_g1_i1,blat.proc3829899.chain_3030	2	STRG.25952.1,blat.proc3829899.chain_3029	2
scaffold_8	spliced_intron	10239564	10239921	+	asmbl_52151,asmbl_52155	none	STRG.10282.1,blat.proc3829875.chain_2790,blat.proc3829875.chain_2791	3	STRG.10282.3,Trinity_GG_5715_c0_g1_i3,blat.proc3829875.chain_2794	3
scaffold_3	retained_intron	4304531	4304555	-	asmbl_38754	none	STRG.3128.1	1	STRG.3128.2	1
scaffold_1	retained_intron	5739516	5739656	+	asmbl_1771	none	blat.proc3829871.chain_375	1	STRG.382.2,blat.proc3829871.chain_370,blat.proc3829871.chain_371,blat.proc3829871.chain_372,blat.proc3829871.chain_373	5
scaffold_27	skipped_exon	3091909	3093281	-	asmbl_36840,asmbl_36846	none	STRG.28775.1,STRG.28775.5,blat.proc3829901.chain_1947	3	STRG.28775.4,blat.proc3829901.chain_1946	2
scaffold_25	alternate_exon	6298614	6298920	-	asmbl_34315,asmbl_34316	none	STRG.27515.1,Trinity_GG_32428_c0_g1_i4,blat.proc3829901.chain_819,blat.proc3829901.chain_822	4	blat.proc3829901.chain_820	1
scaffold_23	alt_acceptor	1996779	1996780	-	asmbl_31397	none	STRG.25651.1,blat.proc3829899.chain_2732	2	STRG.25651.2	1
scaffold_15	retained_intron	4117365	4117553	-	asmbl_15130	none	STRG.18141.3,Trinity_GG_27184_c0_g1_i1,blat.proc3829895.chain_2829	3	STRG.18141.1,STRG.18141.2,STRG.18141.4,blat.proc3829895.chain_2826,blat.proc3829895.chain_2828	5
scaffold_3	spliced_intron	14186470	14186940	-	asmbl_39277,asmbl_39280,asmbl_39281,asmbl_39282	none	STRG.3759.1,STRG.3759.2,STRG.3759.3,STRG.3759.5,Trinity_GG_19089_c0_g1_i5,blat.proc3829887.chain_3542,blat.proc3829887.chain_3546	7	STRG.3759.4,Trinity_GG_19089_c0_g1_i1,blat.proc3829887.chain_3545	3
scaffold_27	spliced_intron	975659	975913	+	asmbl_35931,asmbl_35932,asmbl_35933,asmbl_35936,asmbl_35937	none	STRG.28576.1,STRG.28576.2,Trinity_GG_15816_c0_g1_i1,Trinity_GG_15816_c0_g1_i2,Trinity_GG_15816_c0_g1_i5,Trinity_GG_15816_c0_g1_i6,blat.proc3829885.chain_1616,blat.proc3829885.chain_1617,blat.proc3829885.chain_1619,blat.proc3829885.chain_1621	10	blat.proc3829885.chain_1618	1
scaffold_2	alt_donor	2455315	2455316	-	asmbl_22920	none	STRG.1690.1,blat.proc3829887.chain_1531	2	STRG.1690.3	1
scaffold_28	retained_intron	2265643	2266048	-	asmbl_37345,asmbl_37353	none	STRG.29380.4,blat.proc3829901.chain_2471	2	STRG.29380.1,STRG.29380.2,STRG.29380.3,Trinity_GG_33458_c0_g1_i4,blat.proc3829901.chain_2467,blat.proc3829901.chain_2468,blat.proc3829901.chain_2469,blat.proc3829901.chain_2470	8
scaffold_17	starts_in_intron	12385244	12385244	-	asmbl_19371,asmbl_19374,asmbl_19375	none	STRG.20776.1,STRG.20776.2,STRG.20776.4	3	STRG.20776.3	1
scaffold_22	ends_in_intron	745220	745220	-	asmbl_29894	none	blat.proc3829899.chain_1765	1	STRG.24710.2,STRG.24710.3,blat.proc3829899.chain_1764,blat.proc3829899.chain_1766	4
scaffold_21	retained_intron	2654346	2654855	-	asmbl_27510,asmbl_27512,asmbl_27513,asmbl_27515	none	STRG.23889.2,STRG.23889.3,Trinity_GG_30293_c0_g1_i8,blat.proc3829899.chain_908,blat.proc3829899.chain_909,blat.proc3829899.chain_913,blat.proc3829899.chain_914	7	STRG.23889.1,Trinity_GG_30293_c0_g1_i10,Trinity_GG_30293_c0_g1_i6,blat.proc3829899.chain_910,blat.proc3829899.chain_915	5
scaffold_6	alternate_exon	14855671	14857685	-	asmbl_48976	none	STRG.8256.2,Trinity_GG_21715_c2_g1_i1,blat.proc3829891.chain_578	3	STRG.8256.3	1
scaffold_7	retained_intron	13889999	13890106	+	asmbl_51266,asmbl_51267	none	STRG.9476.2,STRG.9476.3	2	STRG.9476.1,Trinity_GG_5267_c0_g1_i1,blat.proc3829875.chain_1942	3
scaffold_17	retained_intron	13844846	13845553	-	asmbl_19428,asmbl_19429	none	STRG.20849.1,STRG.20849.2	2	STRG.20849.3,blat.proc3829897.chain_1693	2
scaffold_20	ends_in_intron	10134229	10134229	+	asmbl_26093	none	Trinity_GG_13031_c0_g1_i2,blat.proc3829883.chain_664	2	STRG.23544.1,Trinity_GG_13031_c0_g1_i1,blat.proc3829883.chain_663	3
scaffold_13	ends_in_intron	4296916	4296916	+	asmbl_10757	none	blat.proc3829879.chain_443	1	STRG.15739.1	1
scaffold_19	alt_acceptor	11522326	11522327	-	asmbl_21627,asmbl_21628,asmbl_21630	none	STRG.22476.1,STRG.22476.2,STRG.22476.4,blat.proc3829897.chain_3123,blat.proc3829897.chain_3124	5	STRG.22476.3	1
scaffold_16	starts_in_intron	10456305	10456305	+	asmbl_17343	none	Trinity_GG_10750_c1_g1_i2,blat.proc3829881.chain_496	2	STRG.19603.1,Trinity_GG_10750_c1_g1_i1,blat.proc3829881.chain_497	3
scaffold_11	retained_exon	6711498	6713217	-	asmbl_6712,asmbl_6713,asmbl_6715,asmbl_6717	none	STRG.13703.1,STRG.13703.2,STRG.13703.4,blat.proc3829893.chain_2180,blat.proc3829893.chain_2182	5	STRG.13703.5	1
scaffold_10	spliced_intron	7684958	7685179	+	asmbl_4577	none	STRG.12548.2,blat.proc3829877.chain_1167	2	STRG.12548.4,blat.proc3829877.chain_1171	2
scaffold_4	retained_intron	12689403	12689673	-	asmbl_41694	none	Trinity_GG_19724_c0_g1_i4,blat.proc3829889.chain_921	2	STRG.4909.1,blat.proc3829889.chain_919	2
scaffold_2	alt_acceptor	7785424	7785425	+	asmbl_24609,asmbl_24611,asmbl_24612	none	STRG.2076.4,STRG.2076.7,blat.proc3829871.chain_2202,blat.proc3829871.chain_2207,blat.proc3829871.chain_2213	5	STRG.2076.6,Trinity_GG_1189_c0_g1_i14,blat.proc3829871.chain_2204	3
scaffold_24	alternate_exon	9084956	9087625	+	asmbl_32508	none	STRG.26930.3	1	STRG.26930.4,blat.proc3829885.chain_82	2
scaffold_21	alternate_exon	1756164	1759216	-	asmbl_27445	none	Trinity_GG_30286_c3_g1_i1,blat.proc3829899.chain_887,blat.proc3829899.chain_891	3	STRG.23809.3	1
scaffold_16	alternate_exon	7227816	7228085	-	asmbl_16356	none	STRG.19382.2	1	STRG.19382.6,STRG.19382.7	2
scaffold_8	alt_donor	9875712	9875713	+	asmbl_52114	none	STRG.10224.2,blat.proc3829875.chain_2737	2	STRG.10224.1,STRG.10224.3,blat.proc3829875.chain_2735,blat.proc3829875.chain_2736	4
scaffold_17	starts_in_intron	3990475	3990475	-	asmbl_18883,asmbl_18884	none	blat.proc3829897.chain_1111,blat.proc3829897.chain_1116	2	STRG.20147.1,STRG.20147.2,blat.proc3829897.chain_1115,blat.proc3829897.chain_1117	4
scaffold_15	retained_intron	14678979	14679166	+	asmbl_14646	none	STRG.18871.1,Trinity_GG_10348_c0_g1_i2,blat.proc3829879.chain_3449	3	STRG.18871.2,Trinity_GG_10348_c0_g1_i1,blat.proc3829879.chain_3448	3
scaffold_20	retained_intron	11438117	11438285	+	asmbl_26199,asmbl_26201	none	STRG.23635.1,STRG.23635.2,blat.proc3829883.chain_776,blat.proc3829883.chain_777	4	STRG.23635.3	1
scaffold_10	alt_acceptor	5684921	5684922	+	asmbl_4472	none	STRG.12387.1	1	STRG.12387.2,STRG.12387.3,blat.proc3829877.chain_1042,blat.proc3829877.chain_1043	4
scaffold_537	alt_acceptor	3946	3947	-	asmbl_46500	none	STRG.30349.1	1	STRG.30349.2	1
scaffold_5	alt_donor	18220740	18220741	+	asmbl_44876,asmbl_44877,asmbl_44879,asmbl_44880	none	STRG.6950.1,STRG.6950.2,STRG.6950.4,blat.proc3829873.chain_3088,blat.proc3829873.chain_3089	5	STRG.6950.3,STRG.6950.5	2
scaffold_1	retained_intron	11269937	11270054	+	asmbl_2082	none	STRG.744.3	1	STRG.744.2	1
scaffold_5	retained_intron	3935983	3936174	-	asmbl_45320	none	STRG.5856.2	1	STRG.5857.1	1
scaffold_12	spliced_intron	14124654	14124874	-	asmbl_8117	none	STRG.15232.2	1	Trinity_GG_25557_c1_g1_i1,blat.proc3829893.chain_3712	2
scaffold_6	spliced_intron	4319469	4319969	+	asmbl_46825	none	blat.proc3829873.chain_3512	1	STRG.7402.1,Trinity_GG_4053_c2_g1_i2,blat.proc3829873.chain_3511,blat.proc3829873.chain_3513,blat.proc3829873.chain_3514	5
scaffold_9	alt_acceptor	13954784	13954785	-	asmbl_55433	none	blat.proc3829893.chain_43	1	STRG.11650.1	1
scaffold_5	alt_acceptor	18824247	18824248	+	asmbl_44947	none	STRG.7003.1,Trinity_GG_3852_c0_g1_i1,blat.proc3829873.chain_3155	3	STRG.7003.2,Trinity_GG_3852_c0_g1_i2,blat.proc3829873.chain_3156	3
scaffold_16	starts_in_intron	14552717	14552717	+	asmbl_17489,asmbl_17490,asmbl_17491,asmbl_17492	none	STRG.19828.2,STRG.19828.3,Trinity_GG_10868_c0_g1_i1,Trinity_GG_10868_c0_g1_i3,Trinity_GG_10868_c0_g1_i4,blat.proc3829881.chain_687,blat.proc3829881.chain_688,blat.proc3829881.chain_689	8	STRG.19828.1,Trinity_GG_10868_c0_g1_i2,blat.proc3829881.chain_690	3
scaffold_28	retained_intron	5249878	5250166	-	asmbl_37599	none	blat.proc3829901.chain_2695	1	STRG.29654.1,blat.proc3829901.chain_2694,blat.proc3829901.chain_2696	3
scaffold_23	alternate_exon	5618925	5621741	-	asmbl_31645,asmbl_31646,asmbl_31648	none	STRG.25917.2,STRG.25917.3,blat.proc3829899.chain_3024,blat.proc3829899.chain_3025,blat.proc3829899.chain_3026	5	STRG.25917.1	1
scaffold_6	spliced_intron	12415798	12415973	-	asmbl_48739	none	STRG.7990.4	1	STRG.7990.1,STRG.7990.2,STRG.7990.3,STRG.7990.5,blat.proc3829891.chain_292,blat.proc3829891.chain_293,blat.proc3829891.chain_294	7
scaffold_17	alternate_exon	10024570	10030298	+	asmbl_18280,asmbl_18281	none	STRG.20606.1,Trinity_GG_11248_c0_g1_i4,blat.proc3829881.chain_1338	3	STRG.20606.2,STRG.20606.3	2
scaffold_12	alt_donor	10188526	10188527	-	asmbl_7858,asmbl_7859,asmbl_7861,asmbl_7862,asmbl_7865	none	STRG.14979.1,STRG.14979.4,STRG.14979.5,STRG.14979.6,blat.proc3829893.chain_3400,blat.proc3829893.chain_3401,blat.proc3829893.chain_3403	7	STRG.14979.2,blat.proc3829893.chain_3405	2
scaffold_13	alternate_exon	3705325	3706231	-	asmbl_9525	none	STRG.15671.1	1	STRG.15671.3	1
scaffold_16	retained_exon	7097283	7097405	+	asmbl_17120	none	STRG.19367.1,blat.proc3829881.chain_264	2	STRG.19367.2,blat.proc3829881.chain_265	2
scaffold_7	retained_intron	13196688	13197490	-	asmbl_50111,asmbl_50112,asmbl_50113	none	STRG.9418.3,Trinity_GG_22315_c0_g1_i2,blat.proc3829891.chain_1696,blat.proc3829891.chain_1697,blat.proc3829891.chain_1698	5	blat.proc3829891.chain_1694	1
scaffold_17	skipped_exon	7849232	7849831	+	asmbl_18055	none	STRG.20399.2	1	STRG.20399.1,blat.proc3829881.chain_1175	2
scaffold_4	retained_intron	8426956	8427185	-	asmbl_41514	none	blat.proc3829889.chain_776	1	STRG.4672.2,blat.proc3829889.chain_775	2
scaffold_17	retained_intron	14627703	14627832	-	asmbl_19485,asmbl_19487	none	STRG.20920.2,blat.proc3829897.chain_1812	2	STRG.20920.3,blat.proc3829897.chain_1816	2
scaffold_10	retained_intron	7685649	7686027	+	asmbl_4578,asmbl_4579	none	STRG.12548.4,blat.proc3829877.chain_1168,blat.proc3829877.chain_1171	3	STRG.12548.2,blat.proc3829877.chain_1167	2
scaffold_25	alternate_exon	991668	991784	+	asmbl_33356	none	STRG.27140.2	1	STRG.27140.1,blat.proc3829885.chain_184	2
scaffold_15	skipped_exon	15188738	15189525	+	asmbl_14692	none	STRG.18906.2	1	STRG.18906.1,blat.proc3829879.chain_3471,blat.proc3829879.chain_3474,blat.proc3829879.chain_3475,blat.proc3829879.chain_3476,blat.proc3829879.chain_3479,blat.proc3829879.chain_3481,blat.proc3829879.chain_3482,blat.proc3829879.chain_3484	9
scaffold_27	ends_in_intron	2814642	2814642	+	asmbl_36076	none	blat.proc3829885.chain_1804	1	STRG.28742.3,STRG.28742.4	2
scaffold_1	spliced_intron	15888475	15889037	+	asmbl_2438	none	STRG.1117.3	1	STRG.1117.2,blat.proc3829871.chain_1169	2
scaffold_4	skipped_exon	12727702	12728360	+	asmbl_43075	none	STRG.4913.2,blat.proc3829873.chain_1261	2	STRG.4913.1,blat.proc3829873.chain_1262	2
scaffold_8	retained_intron	2846840	2846887	-	asmbl_52710	none	STRG.9800.1,Trinity_GG_22479_c0_g1_i1,blat.proc3829891.chain_1968	3	STRG.9800.2	1
scaffold_17	alternate_exon	5070318	5070394	+	asmbl_17930,asmbl_17931	none	STRG.20221.1,STRG.20221.2,Trinity_GG_11042_c0_g1_i2,Trinity_GG_11042_c0_g1_i3,blat.proc3829881.chain_970,blat.proc3829881.chain_971	6	STRG.20221.3,STRG.20221.4,STRG.20221.5	3
scaffold_13	alternate_exon	10228524	10228561	-	asmbl_10015	none	STRG.16243.2,blat.proc3829895.chain_976	2	STRG.16243.1,STRG.16243.3,STRG.16243.4,blat.proc3829895.chain_977	4
scaffold_3	spliced_intron	17456078	17456973	+	asmbl_40640,asmbl_40641	none	STRG.3976.1,STRG.3976.3,Trinity_GG_2205_c0_g1_i1,Trinity_GG_2205_c0_g1_i3,blat.proc3829873.chain_332,blat.proc3829873.chain_333	6	STRG.3976.2,Trinity_GG_2205_c0_g1_i4,blat.proc3829873.chain_331,blat.proc3829873.chain_334	4
scaffold_10	starts_in_intron	6072490	6072490	-	asmbl_3343	none	blat.proc3829893.chain_925	1	STRG.12437.1,STRG.12437.2,STRG.12437.3,STRG.12437.5,blat.proc3829893.chain_918,blat.proc3829893.chain_919,blat.proc3829893.chain_920,blat.proc3829893.chain_921,blat.proc3829893.chain_922,blat.proc3829893.chain_923,blat.proc3829893.chain_924	11
scaffold_1	alt_acceptor	20347060	20347061	+	asmbl_2602,asmbl_2603,asmbl_2604,asmbl_2608,asmbl_2610,asmbl_2614	none	STRG.1398.2,STRG.1398.3,STRG.1398.4,STRG.1398.6,Trinity_GG_815_c2_g1_i6,blat.proc3829871.chain_1446,blat.proc3829871.chain_1452,blat.proc3829871.chain_1453,blat.proc3829871.chain_1454	9	blat.proc3829871.chain_1450	1
scaffold_22	alt_acceptor	5936986	5936987	+	asmbl_29367	none	STRG.24924.3	1	STRG.24924.2	1
scaffold_2	starts_in_intron	6467086	6467086	+	asmbl_24496	none	Trinity_GG_1137_c0_g1_i2,blat.proc3829871.chain_2073	2	STRG.2012.1,STRG.2012.2,blat.proc3829871.chain_2072,blat.proc3829871.chain_2074,blat.proc3829871.chain_2075	5
scaffold_3	alternate_exon	18930302	18938011	+	asmbl_40706,asmbl_40707,asmbl_40708,asmbl_40709	none	STRG.4063.1,STRG.4063.2,STRG.4063.3,STRG.4063.4,blat.proc3829873.chain_427	5	STRG.4063.5,Trinity_GG_2257_c2_g1_i1,blat.proc3829873.chain_428	3
scaffold_6	ends_in_intron	17882835	17882835	-	asmbl_49149	none	Trinity_GG_21830_c0_g2_i1,blat.proc3829891.chain_768	2	STRG.8474.1,STRG.8474.3,STRG.8474.4,Trinity_GG_21830_c0_g1_i2,Trinity_GG_21830_c0_g1_i3,blat.proc3829891.chain_764,blat.proc3829891.chain_767	7
scaffold_1	alternate_exon	18280166	18282998	-	asmbl_1096	none	blat.proc3829887.chain_1184	1	STRG.1276.3,blat.proc3829887.chain_1185	2
scaffold_28	ends_in_intron	7186882	7186882	-	asmbl_37709,asmbl_37710	none	STRG.29757.2,blat.proc3829901.chain_2896	2	STRG.29757.1	1
scaffold_25	alt_acceptor	3585914	3585915	+	asmbl_33426	none	STRG.27284.1,blat.proc3829885.chain_316	2	STRG.27284.2	1
scaffold_8	starts_in_intron	10239542	10239542	+	asmbl_52150	none	Trinity_GG_5715_c0_g1_i3,blat.proc3829875.chain_2794	2	STRG.10282.2,blat.proc3829875.chain_2792	2
scaffold_14	alternate_exon	4115166	4115309	+	asmbl_11950	none	STRG.16951.1,Trinity_GG_9333_c0_g1_i5,blat.proc3829879.chain_1691	3	STRG.16951.2,Trinity_GG_9333_c0_g1_i7,blat.proc3829879.chain_1689	3
scaffold_2	retained_intron	15267111	15267282	+	asmbl_25025,asmbl_25027	none	blat.proc3829871.chain_2517,blat.proc3829871.chain_2519	2	STRG.2480.1,STRG.2480.2,STRG.2480.3,Trinity_GG_1353_c0_g1_i14,blat.proc3829871.chain_2514,blat.proc3829871.chain_2515,blat.proc3829871.chain_2516,blat.proc3829871.chain_2518,blat.proc3829871.chain_2520,blat.proc3829871.chain_2521,blat.proc3829871.chain_2522,blat.proc3829871.chain_2523	12
scaffold_11	spliced_intron	11640396	11641269	+	asmbl_5946,asmbl_5950	none	STRG.14080.1,blat.proc3829877.chain_2568,blat.proc3829877.chain_2572	3	blat.proc3829877.chain_2570,blat.proc3829877.chain_2573,blat.proc3829877.chain_2574	3
scaffold_10	retained_intron	4058608	4058757	-	asmbl_3165,asmbl_3168	none	STRG.12237.6,STRG.12237.7,blat.proc3829893.chain_707	3	STRG.12237.1,STRG.12237.4,blat.proc3829893.chain_706,blat.proc3829893.chain_709	4
scaffold_26	alt_acceptor	9775839	9775840	+	asmbl_35777,asmbl_35780	none	STRG.28501.2,STRG.28501.4	2	STRG.28501.5,blat.proc3829885.chain_1532,blat.proc3829885.chain_1535	3
scaffold_10	alternate_exon	6018576	6018961	-	asmbl_3337	none	blat.proc3829893.chain_894	1	blat.proc3829893.chain_893	1
scaffold_13	retained_intron	2359851	2360242	+	asmbl_10566	none	Trinity_GG_8511_c0_g1_i12,blat.proc3829879.chain_153	2	STRG.15543.12,STRG.15543.3,STRG.15543.6,STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161	12
scaffold_7	alt_donor	16823434	16823435	-	asmbl_50234,asmbl_50235	none	blat.proc3829891.chain_1826,blat.proc3829891.chain_1828	2	STRG.9585.1,STRG.9585.2,blat.proc3829891.chain_1829	3
scaffold_24	retained_intron	1064378	1064557	+	asmbl_32071,asmbl_32073	none	STRG.26360.1,STRG.26360.4,Trinity_GG_14583_c0_g1_i4,blat.proc3829883.chain_3295,blat.proc3829883.chain_3296	5	STRG.26360.5	1
scaffold_6	alt_donor	6999942	6999943	+	asmbl_46975	none	STRG.7607.1	1	STRG.7607.2,STRG.7607.3,blat.proc3829873.chain_3702	3
scaffold_6	spliced_intron	13964868	13965021	+	asmbl_47490,asmbl_47491	none	STRG.8144.1,STRG.8144.2,blat.proc3829875.chain_577	3	blat.proc3829875.chain_578	1
scaffold_27	skipped_exon	5015909	5017714	+	asmbl_36293	none	STRG.28909.3,Trinity_GG_16013_c0_g1_i3,blat.proc3829885.chain_2041	3	STRG.28909.1,STRG.28909.2,blat.proc3829885.chain_2040,blat.proc3829885.chain_2042	4
scaffold_7	alt_donor	11851482	11851483	+	asmbl_51072	none	STRG.9296.3,blat.proc3829875.chain_1749,blat.proc3829875.chain_1751	3	STRG.9296.1,blat.proc3829875.chain_1750	2
scaffold_4	spliced_intron	16912391	16912467	+	asmbl_43349	none	STRG.5280.5	1	STRG.5280.3	1
scaffold_1	alternate_exon	4586420	4586649	+	asmbl_1674	none	blat.proc3829871.chain_324	1	STRG.280.1,blat.proc3829871.chain_323	2
scaffold_11	alt_acceptor	12045727	12045728	+	asmbl_5973,asmbl_5974	none	STRG.14113.1,STRG.14113.3,blat.proc3829877.chain_2532	3	STRG.14113.2,Trinity_GG_7741_c0_g1_i2,blat.proc3829877.chain_2531	3
scaffold_6	alternate_exon	2929007	2929199	-	asmbl_48144	none	blat.proc3829889.chain_3233	1	STRG.7290.2,blat.proc3829889.chain_3236,blat.proc3829889.chain_3237	3
scaffold_24	retained_intron	2065131	2065376	-	asmbl_32760	none	STRG.26415.2,Trinity_GG_31773_c0_g1_i3,blat.proc3829899.chain_3478	3	STRG.26415.1	1
scaffold_13	alternate_exon	1521204	1521269	-	asmbl_9380	none	STRG.15500.3	1	STRG.15500.1,STRG.15500.2,Trinity_GG_25702_c0_g1_i1,Trinity_GG_25702_c0_g1_i5,blat.proc3829895.chain_260,blat.proc3829895.chain_262	6
scaffold_17	starts_in_intron	5726761	5726761	-	asmbl_18995	none	blat.proc3829897.chain_1217	1	STRG.20261.1,STRG.20261.3,blat.proc3829897.chain_1218	3
scaffold_13	ends_in_intron	11935279	11935279	+	asmbl_11298	none	blat.proc3829879.chain_1083	1	STRG.16314.1,Trinity_GG_8979_c0_g1_i3	2
scaffold_27	starts_in_intron	2793654	2793654	+	asmbl_36069	none	Trinity_GG_15912_c1_g1_i2,blat.proc3829885.chain_1815	2	STRG.28740.1,blat.proc3829885.chain_1813,blat.proc3829885.chain_1814	3
scaffold_17	alt_donor	1124305	1124306	+	asmbl_17720,asmbl_17722	none	STRG.19947.2,blat.proc3829881.chain_781	2	STRG.19947.1,blat.proc3829881.chain_780,blat.proc3829881.chain_783	3
scaffold_3	starts_in_intron	15787823	15787823	-	asmbl_39397,asmbl_39398	none	STRG.3856.1,STRG.3856.4,Trinity_GG_19151_c2_g2_i1,blat.proc3829887.chain_3694	4	STRG.3856.2,Trinity_GG_19151_c2_g1_i1,blat.proc3829887.chain_3693	3
scaffold_13	alt_donor	4602222	4602223	-	asmbl_9602	none	STRG.15781.2,blat.proc3829895.chain_531	2	blat.proc3829895.chain_533	1
scaffold_16	retained_intron	2215678	2215859	+	asmbl_16913	none	blat.proc3829879.chain_3744	1	STRG.19114.1,Trinity_GG_10490_c0_g1_i2,blat.proc3829879.chain_3745,blat.proc3829879.chain_3746	4
scaffold_23	starts_in_intron	1141712	1141712	-	asmbl_31349	none	STRG.25575.2	1	STRG.25575.1,blat.proc3829899.chain_2599,blat.proc3829899.chain_2600,blat.proc3829899.chain_2601	4
scaffold_11	spliced_intron	6251734	6253377	+	asmbl_5587	none	STRG.13670.1,blat.proc3829877.chain_2180	2	STRG.13670.3,Trinity_GG_7547_c0_g1_i1,Trinity_GG_7547_c1_g1_i1,blat.proc3829877.chain_2182	4
scaffold_23	alt_donor	6630152	6630153	+	asmbl_30928,asmbl_30930,asmbl_30932	none	STRG.25985.2,blat.proc3829883.chain_2813,blat.proc3829883.chain_2815,blat.proc3829883.chain_2817	4	STRG.25985.1,blat.proc3829883.chain_2814,blat.proc3829883.chain_2816	3
scaffold_26	alt_donor	5894472	5894473	-	asmbl_34915	none	Trinity_GG_32791_c0_g1_i6,blat.proc3829901.chain_1392	2	STRG.28281.3	1
scaffold_22	alternate_exon	524807	525364	+	asmbl_29157,asmbl_29159	none	STRG.24686.1,blat.proc3829883.chain_1722,blat.proc3829883.chain_1724	3	blat.proc3829883.chain_1723	1
scaffold_8	alt_acceptor	5742349	5742350	+	asmbl_51890	none	STRG.9987.2	1	STRG.9987.1,blat.proc3829875.chain_2490	2
scaffold_12	ends_in_intron	14187722	14187722	-	asmbl_8125	none	Trinity_GG_25548_c0_g1_i1,blat.proc3829893.chain_3685	2	STRG.15242.2	1
scaffold_27	retained_exon	3093282	3093327	-	asmbl_36846	none	STRG.28775.5	1	STRG.28775.3,blat.proc3829901.chain_1951	2
scaffold_23	retained_intron	10990900	10990994	-	asmbl_31900	none	blat.proc3829899.chain_3315	1	STRG.26288.2	1
scaffold_2	alt_acceptor	3708457	3708458	+	asmbl_24326	none	STRG.1802.1	1	STRG.1802.3	1
scaffold_21	starts_in_intron	10471151	10471151	+	asmbl_28885	none	blat.proc3829883.chain_1559	1	STRG.24503.1,blat.proc3829883.chain_1560,blat.proc3829883.chain_1561	3
scaffold_20	ends_in_intron	10101742	10101742	+	asmbl_26081	none	STRG.23542.1,blat.proc3829883.chain_641	2	STRG.23542.2,blat.proc3829883.chain_642	2
scaffold_7	retained_intron	13019692	13019783	-	asmbl_50100	none	blat.proc3829891.chain_1655	1	STRG.9408.1	1
scaffold_6	alt_donor	13734495	13734496	+	asmbl_47468	none	STRG.8124.1,blat.proc3829875.chain_476	2	STRG.8124.2,STRG.8124.3,blat.proc3829875.chain_477	3
scaffold_25	retained_intron	101644	101716	+	asmbl_33310	none	blat.proc3829885.chain_153	1	STRG.27024.1,Trinity_GG_14936_c0_g1_i1,blat.proc3829885.chain_152	3
scaffold_4	alternate_exon	16483990	16484053	+	asmbl_43307	none	STRG.5224.2	1	STRG.5224.1	1
scaffold_1	ends_in_intron	8754920	8754920	-	asmbl_493	none	STRG.583.5	1	STRG.583.2,STRG.583.4,blat.proc3829887.chain_507,blat.proc3829887.chain_509	4
scaffold_16	alt_acceptor	9033769	9033770	+	asmbl_17253,asmbl_17257	none	STRG.19501.2,blat.proc3829881.chain_388,blat.proc3829881.chain_389	3	STRG.19501.1,STRG.19501.4,blat.proc3829881.chain_387	3
scaffold_5	starts_in_intron	18262369	18262369	+	asmbl_44894	none	Trinity_GG_3828_c0_g2_i1,blat.proc3829873.chain_3110	2	STRG.6959.2,blat.proc3829873.chain_3103	2
scaffold_12	alt_acceptor	12291139	12291140	-	asmbl_7990,asmbl_7991	none	STRG.15114.5,STRG.15114.6	2	STRG.15114.2	1
scaffold_13	spliced_intron	7217965	7218245	+	asmbl_11009,asmbl_11013	none	blat.proc3829879.chain_693,blat.proc3829879.chain_696	2	STRG.16002.2,Trinity_GG_8782_c0_g1_i1,blat.proc3829879.chain_697	3
scaffold_13	retained_intron	6628167	6628496	-	asmbl_9769	none	Trinity_GG_25950_c0_g1_i1,blat.proc3829895.chain_662	2	STRG.15951.1,Trinity_GG_25950_c0_g1_i2,blat.proc3829895.chain_661	3
scaffold_1	starts_in_intron	10415157	10415157	-	asmbl_594	none	blat.proc3829887.chain_610	1	STRG.680.1,STRG.680.2,STRG.680.3,STRG.680.4,blat.proc3829887.chain_608,blat.proc3829887.chain_609	6
scaffold_25	spliced_intron	5382118	5382521	-	asmbl_34235	none	STRG.27428.2,Trinity_GG_32378_c0_g1_i1,blat.proc3829901.chain_731	3	STRG.27428.1,Trinity_GG_32378_c0_g1_i2,blat.proc3829901.chain_732	3
scaffold_5	ends_in_intron	19031420	19031420	-	asmbl_46262,asmbl_46264	none	STRG.7018.6,STRG.7018.7,Trinity_GG_20922_c0_g1_i8,blat.proc3829889.chain_3007,blat.proc3829889.chain_3010	5	STRG.7018.3,STRG.7018.4,STRG.7018.5,blat.proc3829889.chain_3003,blat.proc3829889.chain_3006,blat.proc3829889.chain_3008,blat.proc3829889.chain_3009	7
scaffold_7	alt_acceptor	18392945	18392946	-	asmbl_50288,asmbl_50296,asmbl_50297	none	STRG.9659.1,Trinity_GG_22427_c0_g1_i10,blat.proc3829891.chain_1869,blat.proc3829891.chain_1870,blat.proc3829891.chain_1873	5	STRG.9659.2,STRG.9659.3,STRG.9659.4,STRG.9659.5,Trinity_GG_22427_c0_g1_i11,Trinity_GG_22427_c0_g1_i15,Trinity_GG_22427_c0_g1_i5,blat.proc3829891.chain_1867,blat.proc3829891.chain_1868,blat.proc3829891.chain_1871,blat.proc3829891.chain_1874,blat.proc3829891.chain_1875	12
scaffold_2	spliced_intron	4788146	4788491	+	asmbl_24404	none	STRG.1897.1,blat.proc3829871.chain_1854	2	STRG.1897.2,STRG.1897.4,blat.proc3829871.chain_1852	3
scaffold_12	alt_acceptor	5659353	5659354	+	asmbl_8625	none	STRG.14707.2	1	STRG.14707.1,blat.proc3829877.chain_3193	2
scaffold_26	ends_in_intron	5746696	5746696	+	asmbl_35560,asmbl_35561,asmbl_35562	none	STRG.28253.2,blat.proc3829885.chain_1265,blat.proc3829885.chain_1266,blat.proc3829885.chain_1267	4	STRG.28253.1,STRG.28253.3	2
scaffold_17	alternate_exon	7848312	7849895	+	asmbl_18055	none	STRG.20399.2	1	STRG.20399.3	1
scaffold_2	alt_donor	3470174	3470175	+	asmbl_24308	none	STRG.1777.1,Trinity_GG_1002_c0_g1_i1,blat.proc3829871.chain_1834	3	STRG.1777.2	1
scaffold_10	starts_in_intron	3038905	3038905	+	asmbl_4300	none	STRG.12116.2,blat.proc3829877.chain_755	2	STRG.12116.1,Trinity_GG_6702_c0_g1_i1,blat.proc3829877.chain_753,blat.proc3829877.chain_754	4
scaffold_7	alt_acceptor	1219914	1219915	+	asmbl_50463	none	STRG.8618.2,Trinity_GG_4734_c0_g1_i2	2	STRG.8618.1,Trinity_GG_4734_c0_g1_i4	2
scaffold_18	retained_intron	1895347	1896928	-	asmbl_19688,asmbl_19689,asmbl_19691,asmbl_19692,asmbl_19693,asmbl_19694,asmbl_19696,asmbl_19697,asmbl_19698,asmbl_19701,asmbl_19703	none	STRG.21072.10,STRG.21072.2,STRG.21072.3,STRG.21072.7,STRG.21072.8,STRG.21072.9,blat.proc3829897.chain_1890,blat.proc3829897.chain_1891,blat.proc3829897.chain_1893,blat.proc3829897.chain_1895,blat.proc3829897.chain_1897	11	blat.proc3829897.chain_1898,blat.proc3829897.chain_1899,blat.proc3829897.chain_1901,blat.proc3829897.chain_1902	4
scaffold_13	retained_intron	3570908	3571205	+	asmbl_10692,asmbl_10693	none	STRG.15661.2,Trinity_GG_8562_c0_g1_i4,blat.proc3829879.chain_279	3	STRG.15661.1,blat.proc3829879.chain_277,blat.proc3829879.chain_278	3
scaffold_11	spliced_intron	14532679	14533569	+	asmbl_6066	none	STRG.14239.3,Trinity_GG_7860_c0_g1_i6,blat.proc3829877.chain_2745	3	STRG.14239.2,STRG.14239.4,Trinity_GG_7860_c0_g1_i7,blat.proc3829877.chain_2744,blat.proc3829877.chain_2746,blat.proc3829877.chain_2748	6
scaffold_20	retained_intron	5928434	5928707	-	asmbl_26716	none	Trinity_GG_29904_c0_g1_i4,blat.proc3829899.chain_133	2	STRG.23186.1,STRG.23186.2,blat.proc3829899.chain_131,blat.proc3829899.chain_132	4
scaffold_8	ends_in_intron	12050694	12050694	-	asmbl_53180	none	Trinity_GG_22779_c0_g1_i2,blat.proc3829891.chain_2511	2	STRG.10393.1,blat.proc3829891.chain_2510	2
scaffold_17	alt_donor	1292435	1292436	-	asmbl_18724	none	STRG.19952.4,blat.proc3829897.chain_843	2	STRG.19952.1,STRG.19952.3,blat.proc3829897.chain_836,blat.proc3829897.chain_838,blat.proc3829897.chain_840	5
scaffold_9	alt_acceptor	4899429	4899430	+	asmbl_53950	none	STRG.11053.2	1	STRG.11053.1,blat.proc3829875.chain_3518	2
scaffold_7	retained_intron	9833548	9833658	-	asmbl_49890,asmbl_49891	none	STRG.9171.1,STRG.9171.2,blat.proc3829891.chain_1397,blat.proc3829891.chain_1398	4	STRG.9171.3,blat.proc3829891.chain_1399	2
scaffold_4	alt_acceptor	8989635	8989636	-	asmbl_41536,asmbl_41538	none	STRG.4717.1,STRG.4717.4,blat.proc3829889.chain_759	3	STRG.4717.3,STRG.4717.5	2
scaffold_1	retained_intron	5734339	5734453	+	asmbl_1762	none	STRG.380.3	1	STRG.380.1,STRG.380.2,blat.proc3829871.chain_442,blat.proc3829871.chain_443,blat.proc3829871.chain_446	5
scaffold_6	retained_intron	2909228	2909325	+	asmbl_46732	none	Trinity_GG_3977_c0_g1_i5,blat.proc3829873.chain_3368	2	STRG.7289.2,blat.proc3829873.chain_3369,blat.proc3829873.chain_3373	3
scaffold_3	spliced_intron	6658411	6658488	+	asmbl_40060,asmbl_40062,asmbl_40063,asmbl_40067,asmbl_40068,asmbl_40070	none	STRG.3290.2,STRG.3290.3,blat.proc3829871.chain_3460,blat.proc3829871.chain_3464,blat.proc3829871.chain_3468,blat.proc3829871.chain_3469	6	STRG.3290.1,STRG.3290.4,STRG.3290.5,blat.proc3829871.chain_3459,blat.proc3829871.chain_3461	5
scaffold_24	spliced_intron	9120008	9120346	+	asmbl_32512,asmbl_32514,asmbl_32516	none	STRG.26927.1,blat.proc3829885.chain_102,blat.proc3829885.chain_104,blat.proc3829885.chain_98	4	Trinity_GG_14906_c0_g1_i10,blat.proc3829885.chain_101,blat.proc3829885.chain_103,blat.proc3829885.chain_97	4
scaffold_18	retained_intron	632566	632655	+	asmbl_20335	none	STRG.20993.2,blat.proc3829881.chain_1870	2	STRG.20993.3	1
scaffold_2	alt_donor	1594900	1594901	+	asmbl_24236	none	STRG.1628.2	1	STRG.1628.1,STRG.1628.3,STRG.1628.4,Trinity_GG_905_c0_g1_i6,blat.proc3829871.chain_1665,blat.proc3829871.chain_1668,blat.proc3829871.chain_1669	7
scaffold_27	ends_in_intron	6195321	6195321	+	asmbl_36338	none	blat.proc3829885.chain_2106	1	STRG.28993.5	1
scaffold_1	retained_intron	12334369	12334829	-	asmbl_710,asmbl_711,asmbl_718,asmbl_721	none	STRG.843.2,blat.proc3829887.chain_737,blat.proc3829887.chain_741,blat.proc3829887.chain_743,blat.proc3829887.chain_746	5	STRG.843.1,blat.proc3829887.chain_734,blat.proc3829887.chain_744,blat.proc3829887.chain_745	4
scaffold_4	ends_in_intron	19605161	19605161	-	asmbl_42223	none	STRG.5547.3	1	STRG.5547.1,STRG.5547.2	2
scaffold_12	starts_in_intron	14268503	14268503	+	asmbl_9049	none	Trinity_GG_8393_c0_g1_i1,blat.proc3829877.chain_3684	2	STRG.15250.1,blat.proc3829877.chain_3683	2
scaffold_7	spliced_intron	5916677	5917155	-	asmbl_49712,asmbl_49715	none	STRG.8887.1,STRG.8887.4,blat.proc3829891.chain_1165	3	STRG.8887.5,Trinity_GG_22041_c0_g1_i6,blat.proc3829891.chain_1163,blat.proc3829891.chain_1166	4
scaffold_17	alt_donor	11959876	11959877	-	asmbl_19351	none	STRG.20711.3	1	STRG.20711.2,blat.proc3829897.chain_1669,blat.proc3829897.chain_1671	3
scaffold_14	alt_acceptor	10479548	10479549	+	asmbl_12303	none	STRG.17382.1,blat.proc3829879.chain_2095	2	blat.proc3829879.chain_2091	1
scaffold_2	alt_donor	18056025	18056026	-	asmbl_23783	none	STRG.2700.2	1	STRG.2700.1,blat.proc3829887.chain_2524	2
scaffold_13	alt_acceptor	10778623	10778624	-	asmbl_10027	none	STRG.16256.1,blat.proc3829895.chain_1017	2	STRG.16256.2	1
scaffold_25	spliced_intron	3615584	3615675	+	asmbl_33429	none	STRG.27288.1	1	STRG.27288.2	1
scaffold_1	skipped_exon	13883297	13885119	-	asmbl_857	none	STRG.993.5	1	STRG.993.2,STRG.993.4,blat.proc3829887.chain_868	3
scaffold_2	spliced_intron	7782195	7782467	+	asmbl_24605,asmbl_24608,asmbl_24611,asmbl_24613	none	STRG.2076.1,STRG.2076.2,STRG.2076.4,blat.proc3829871.chain_2203,blat.proc3829871.chain_2205,blat.proc3829871.chain_2208,blat.proc3829871.chain_2211,blat.proc3829871.chain_2213	8	STRG.2076.7,blat.proc3829871.chain_2202	2
scaffold_7	alt_acceptor	17810405	17810406	+	asmbl_51382,asmbl_51384,asmbl_51387	none	blat.proc3829875.chain_2098,blat.proc3829875.chain_2099,blat.proc3829875.chain_2100	3	STRG.9616.1,blat.proc3829875.chain_2097,blat.proc3829875.chain_2102,blat.proc3829875.chain_2104,blat.proc3829875.chain_2105	5
scaffold_11	skipped_exon	13035297	13036295	-	asmbl_7094,asmbl_7096	none	STRG.14169.1,blat.proc3829893.chain_2575,blat.proc3829893.chain_2577	3	blat.proc3829893.chain_2576	1
scaffold_11	alternate_exon	3139987	3140023	-	asmbl_6511	none	STRG.13434.3	1	STRG.13434.1,blat.proc3829893.chain_1872	2
scaffold_21	spliced_intron	1171743	1171837	-	asmbl_27409,asmbl_27411	none	STRG.23783.1,STRG.23783.2,blat.proc3829899.chain_848	3	blat.proc3829899.chain_849	1
scaffold_19	alternate_exon	3201874	3207186	+	asmbl_22108	none	STRG.22001.1,blat.proc3829881.chain_2954	2	STRG.22001.2,blat.proc3829881.chain_2953	2
scaffold_9	spliced_intron	16558842	16561320	-	asmbl_55545,asmbl_55548	none	STRG.11797.1,STRG.11797.4,Trinity_GG_23481_c0_g3_i5,Trinity_GG_23481_c0_g3_i6,blat.proc3829893.chain_85,blat.proc3829893.chain_88	6	STRG.11797.2,STRG.11797.3,STRG.11797.6,Trinity_GG_23481_c0_g1_i1,Trinity_GG_23481_c0_g2_i1,blat.proc3829893.chain_81,blat.proc3829893.chain_82	7
scaffold_25	ends_in_intron	3095078	3095078	-	asmbl_34083	none	Trinity_GG_32229_c0_g1_i2	1	STRG.27230.1,STRG.27230.2,STRG.27230.3,blat.proc3829901.chain_489,blat.proc3829901.chain_490	5
scaffold_6	retained_intron	2699075	2699232	-	asmbl_48100	none	STRG.7262.2	1	STRG.7262.1,blat.proc3829889.chain_3259	2
scaffold_23	ends_in_intron	1143781	1143781	-	asmbl_31350	none	blat.proc3829899.chain_2604	1	STRG.25575.1,blat.proc3829899.chain_2599,blat.proc3829899.chain_2600,blat.proc3829899.chain_2601	4
scaffold_12	spliced_intron	9972719	9972921	-	asmbl_7832	none	STRG.14954.2,Trinity_GG_25333_c0_g1_i6,blat.proc3829893.chain_3317	3	Trinity_GG_25333_c0_g1_i4,blat.proc3829893.chain_3315	2
scaffold_11	retained_exon	12904599	12904706	-	asmbl_7082	none	STRG.14165.2	1	STRG.14165.1,blat.proc3829893.chain_2638	2
scaffold_16	starts_in_intron	1479137	1479137	+	asmbl_16867	none	Trinity_GG_10464_c0_g1_i1,blat.proc3829879.chain_3689	2	STRG.19080.2	1
scaffold_10	retained_intron	16531561	16531803	+	asmbl_4995,asmbl_4997	none	STRG.13112.3,blat.proc3829877.chain_1622	2	STRG.13112.1,blat.proc3829877.chain_1619,blat.proc3829877.chain_1621	3
scaffold_9	alt_acceptor	17741783	17741784	+	asmbl_54617,asmbl_54620	none	STRG.11853.2,blat.proc3829877.chain_521	2	STRG.11853.1,STRG.11853.3,blat.proc3829877.chain_523,blat.proc3829877.chain_525,blat.proc3829877.chain_526,blat.proc3829877.chain_527	6
scaffold_20	retained_intron	11948625	11948717	-	asmbl_27132	none	STRG.23687.3,blat.proc3829899.chain_604	2	STRG.23687.2,blat.proc3829899.chain_603	2
scaffold_23	retained_exon	2634795	2634920	+	asmbl_30712,asmbl_30714,asmbl_30716	none	STRG.25710.1,STRG.25710.2,Trinity_GG_14194_c0_g1_i5,blat.proc3829883.chain_2619	4	STRG.25710.3	1
scaffold_1	spliced_intron	9513340	9513605	-	asmbl_544	none	STRG.643.1,blat.proc3829887.chain_543	2	blat.proc3829887.chain_541	1
scaffold_4	alt_acceptor	11075572	11075573	+	asmbl_43032	none	STRG.4827.1,Trinity_GG_2673_c0_g1_i1,blat.proc3829873.chain_1145	3	STRG.4827.2,Trinity_GG_2673_c0_g1_i2,blat.proc3829873.chain_1144	3
scaffold_5	spliced_intron	16648366	16648547	+	asmbl_44775,asmbl_44776,asmbl_44778	none	STRG.6846.1,STRG.6846.2,STRG.6846.3,blat.proc3829873.chain_2906,blat.proc3829873.chain_2908	5	Trinity_GG_3703_c0_g1_i2,blat.proc3829873.chain_2910	2
scaffold_20	spliced_intron	11078653	11078744	-	asmbl_27055,asmbl_27057	none	STRG.23611.2,blat.proc3829899.chain_624,blat.proc3829899.chain_626	3	blat.proc3829899.chain_625,blat.proc3829899.chain_627	2
scaffold_28	ends_in_intron	2651506	2651506	+	asmbl_38090	none	STRG.29436.1,blat.proc3829885.chain_2580	2	STRG.29436.2	1
scaffold_4	alternate_exon	12679986	12680048	-	asmbl_41690	none	STRG.4906.2,blat.proc3829889.chain_970	2	STRG.4906.1,blat.proc3829889.chain_972	2
scaffold_1	alt_donor	13813183	13813184	-	asmbl_850	none	STRG.988.2,blat.proc3829887.chain_902	2	STRG.988.1,blat.proc3829887.chain_903	2
scaffold_5	retained_intron	10853790	10853941	+	asmbl_44373,asmbl_44374	none	STRG.6350.4,blat.proc3829873.chain_2511	2	STRG.6350.1,STRG.6350.3,blat.proc3829873.chain_2512,blat.proc3829873.chain_2513,blat.proc3829873.chain_2514,blat.proc3829873.chain_2515,blat.proc3829873.chain_2516	7
scaffold_13	alt_donor	4376463	4376464	+	asmbl_10766,asmbl_10768	none	STRG.15749.1,blat.proc3829879.chain_404	2	STRG.15749.2	1
scaffold_18	spliced_intron	823947	824156	+	asmbl_20352,asmbl_20354	none	STRG.20996.1,blat.proc3829881.chain_1781,blat.proc3829881.chain_1782	3	STRG.20996.2,Trinity_GG_11513_c0_g1_i7,blat.proc3829881.chain_1778,blat.proc3829881.chain_1780	4
scaffold_14	ends_in_intron	11632488	11632488	+	asmbl_12375	none	blat.proc3829879.chain_2165	1	STRG.17494.1	1
scaffold_9	alt_acceptor	11793088	11793089	-	asmbl_55265,asmbl_55269	none	STRG.11484.2,STRG.11484.3,blat.proc3829891.chain_3591	3	STRG.11484.5	1
scaffold_1	spliced_intron	11177521	11177606	+	asmbl_2064,asmbl_2065,asmbl_2066,asmbl_2069,asmbl_2072,asmbl_2073,asmbl_2074,asmbl_2076	none	STRG.743.1,STRG.743.2,STRG.743.3,STRG.743.4,STRG.743.5,blat.proc3829871.chain_815,blat.proc3829871.chain_819,blat.proc3829871.chain_820,blat.proc3829871.chain_821,blat.proc3829871.chain_822,blat.proc3829871.chain_824,blat.proc3829871.chain_825	12	blat.proc3829871.chain_817	1
scaffold_18	ends_in_intron	7270735	7270735	+	asmbl_20764	none	Trinity_GG_11785_c0_g1_i2,blat.proc3829881.chain_2310	2	STRG.21423.1,Trinity_GG_11785_c0_g1_i1,blat.proc3829881.chain_2309	3
scaffold_759	retained_intron	1999	2114	+	asmbl_51606	none	STRG.30439.1	1	STRG.30439.2	1
scaffold_2	retained_intron	6768217	6768941	+	asmbl_24518,asmbl_24520,asmbl_24522,asmbl_24526	none	Trinity_GG_1102_c0_g1_i11,Trinity_GG_1102_c0_g1_i5,Trinity_GG_1102_c0_g1_i7,Trinity_GG_1102_c0_g1_i8,blat.proc3829871.chain_2005,blat.proc3829871.chain_2009,blat.proc3829871.chain_2010,blat.proc3829871.chain_2012	8	STRG.2035.1,Trinity_GG_1102_c0_g1_i1,Trinity_GG_1102_c0_g1_i2,blat.proc3829871.chain_2008,blat.proc3829871.chain_2011	5
scaffold_6	starts_in_intron	12628761	12628761	-	asmbl_48773,asmbl_48775	none	blat.proc3829891.chain_252,blat.proc3829891.chain_255	2	STRG.8013.1,STRG.8013.2,Trinity_GG_21546_c0_g1_i1,Trinity_GG_21546_c0_g1_i2,blat.proc3829891.chain_253,blat.proc3829891.chain_254,blat.proc3829891.chain_256,blat.proc3829891.chain_257	8
scaffold_2	retained_intron	7816023	7816120	-	asmbl_23301	none	Trinity_GG_18175_c0_g1_i1,blat.proc3829887.chain_1986	2	STRG.2080.1,Trinity_GG_18175_c0_g1_i3,blat.proc3829887.chain_1987	3
scaffold_19	spliced_intron	13003307	13003408	+	asmbl_22643,asmbl_22644,asmbl_22652	none	STRG.22609.1,STRG.22609.2,Trinity_GG_12510_c0_g1_i1,Trinity_GG_12510_c0_g1_i14,Trinity_GG_12510_c0_g1_i5,blat.proc3829881.chain_3576,blat.proc3829881.chain_3581,blat.proc3829881.chain_3585	8	Trinity_GG_12510_c0_g1_i10,blat.proc3829881.chain_3583	2
scaffold_2	retained_exon	6899410	6899421	+	asmbl_24537,asmbl_24540	none	blat.proc3829871.chain_2015,blat.proc3829871.chain_2016	2	STRG.2036.1,STRG.2036.2,STRG.2036.3,STRG.2036.4,blat.proc3829871.chain_2018,blat.proc3829871.chain_2019,blat.proc3829871.chain_2022	7
scaffold_8	starts_in_intron	8747305	8747305	+	asmbl_52017	none	Trinity_GG_5634_c0_g1_i3,blat.proc3829875.chain_2639	2	STRG.10124.1,STRG.10124.2,blat.proc3829875.chain_2640,blat.proc3829875.chain_2641	4
scaffold_17	spliced_intron	14110311	14110420	-	asmbl_19454,asmbl_19455	none	STRG.20887.1,blat.proc3829897.chain_1688,blat.proc3829897.chain_1690	3	blat.proc3829897.chain_1689,blat.proc3829897.chain_1691	2
scaffold_1	retained_intron	9306095	9306201	+	asmbl_1971	none	blat.proc3829871.chain_690	1	STRG.628.1,blat.proc3829871.chain_691,blat.proc3829871.chain_692	3
scaffold_5	spliced_intron	10315083	10315200	+	asmbl_44344	none	STRG.6321.1,blat.proc3829873.chain_2468	2	STRG.6321.2,Trinity_GG_3448_c0_g1_i3,blat.proc3829873.chain_2467	3
scaffold_5	starts_in_intron	8539122	8539122	-	asmbl_45600	none	STRG.6191.2,blat.proc3829889.chain_2251	2	STRG.6191.1,STRG.6191.3,STRG.6191.4,blat.proc3829889.chain_2246,blat.proc3829889.chain_2247,blat.proc3829889.chain_2248,blat.proc3829889.chain_2250,blat.proc3829889.chain_2253	8
scaffold_14	spliced_intron	15469859	15470058	+	asmbl_12589	none	STRG.17772.1	1	STRG.17772.2	1
scaffold_11	alternate_exon	8248351	8248937	-	asmbl_6835	none	Trinity_GG_24747_c0_g1_i1,blat.proc3829893.chain_2272	2	STRG.13820.1	1
scaffold_15	spliced_intron	8828920	8829390	+	asmbl_14301,asmbl_14303	none	STRG.18418.1,blat.proc3829879.chain_3054,blat.proc3829879.chain_3055	3	Trinity_GG_10116_c0_g1_i2,blat.proc3829879.chain_3053	2
scaffold_5	retained_intron	7710260	7710370	-	asmbl_45571,asmbl_45573	none	STRG.6143.1,blat.proc3829889.chain_2233,blat.proc3829889.chain_2234	3	STRG.6143.2,blat.proc3829889.chain_2235	2
scaffold_22	alternate_exon	10670130	10670934	-	asmbl_30383	none	STRG.25390.2,blat.proc3829899.chain_2498	2	STRG.25390.1	1
scaffold_19	spliced_intron	11482922	11483072	-	asmbl_21614,asmbl_21615,asmbl_21619,asmbl_21622,asmbl_21623,asmbl_21624	none	STRG.22477.1,STRG.22477.3,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184,blat.proc3829897.chain_3187,blat.proc3829897.chain_3191,blat.proc3829897.chain_3192	7	Trinity_GG_29530_c0_g1_i9,blat.proc3829897.chain_3188,blat.proc3829897.chain_3189	3
scaffold_8	skipped_exon	16401127	16403044	-	asmbl_53396,asmbl_53399	none	blat.proc3829891.chain_2685,blat.proc3829891.chain_2688	2	STRG.10619.1,STRG.10619.2,blat.proc3829891.chain_2683,blat.proc3829891.chain_2684,blat.proc3829891.chain_2686,blat.proc3829891.chain_2687,blat.proc3829891.chain_2689,blat.proc3829891.chain_2691	8
scaffold_13	alt_acceptor	16437296	16437297	+	asmbl_11555	none	Trinity_GG_9187_c0_g1_i5,blat.proc3829879.chain_1408	2	STRG.16684.1,STRG.16684.2,Trinity_GG_9187_c0_g1_i6,blat.proc3829879.chain_1411	4
scaffold_8	alt_acceptor	11711666	11711667	-	asmbl_53152	none	STRG.10359.1,Trinity_GG_22742_c0_g1_i1,blat.proc3829891.chain_2444	3	STRG.10359.2	1
scaffold_15	alternate_exon	12871737	12871784	-	asmbl_15624	none	STRG.18726.1,Trinity_GG_27526_c0_g1_i1,blat.proc3829895.chain_3490	3	STRG.18726.2	1
scaffold_15	spliced_intron	13972065	13972165	+	asmbl_14606	none	STRG.18817.1,Trinity_GG_10330_c0_g1_i1,blat.proc3829879.chain_3419	3	blat.proc3829879.chain_3421	1
scaffold_28	retained_intron	233644	233732	+	asmbl_37953,asmbl_37954	none	STRG.29233.3,blat.proc3829885.chain_2387	2	STRG.29233.1,STRG.29233.2,blat.proc3829885.chain_2388,blat.proc3829885.chain_2391	4
scaffold_25	alt_acceptor	690824	690825	+	asmbl_33342	none	STRG.27105.2,blat.proc3829885.chain_145	2	STRG.27105.1	1
scaffold_20	spliced_intron	11682548	11683305	-	asmbl_27109	none	STRG.23663.1,blat.proc3829899.chain_663	2	STRG.23663.2,Trinity_GG_30185_c0_g2_i1	2
scaffold_14	skipped_exon	14143576	14144727	+	asmbl_12511,asmbl_12513,asmbl_12514	none	STRG.17676.2,STRG.17676.4,STRG.17676.5	3	STRG.17676.1,STRG.17676.3,blat.proc3829879.chain_2283,blat.proc3829879.chain_2284	4
scaffold_25	retained_intron	3709933	3710091	+	asmbl_33452	none	STRG.27304.1,Trinity_GG_15039_c0_g1_i1,blat.proc3829885.chain_307,blat.proc3829885.chain_308	4	STRG.27304.2,Trinity_GG_15039_c0_g1_i2,blat.proc3829885.chain_306	3
scaffold_27	spliced_intron	638419	638515	-	asmbl_36662,asmbl_36664	none	STRG.28565.1,Trinity_GG_32989_c1_g1_i6,blat.proc3829901.chain_1761	3	Trinity_GG_32989_c1_g1_i3,blat.proc3829901.chain_1760	2
scaffold_1	starts_in_intron	1992732	1992732	+	asmbl_1521	none	Trinity_GG_103_c3_g1_i1,blat.proc3829871.chain_181	2	STRG.126.1,STRG.126.2,blat.proc3829871.chain_176,blat.proc3829871.chain_178	4
scaffold_7	starts_in_intron	15595874	15595874	+	asmbl_51331	none	blat.proc3829875.chain_2001	1	STRG.9548.1,STRG.9548.2,STRG.9548.3,Trinity_GG_5298_c0_g1_i1,blat.proc3829875.chain_1999,blat.proc3829875.chain_2000	6
scaffold_6	alternate_exon	2863074	2863161	+	asmbl_46722	none	STRG.7272.1	1	STRG.7272.3	1
scaffold_5	alt_donor	939512	939513	-	asmbl_45187	none	STRG.5635.2	1	STRG.5635.3	1
scaffold_7	spliced_intron	5183050	5183286	-	asmbl_49689	none	STRG.8845.1,blat.proc3829891.chain_1159	2	STRG.8845.2,blat.proc3829891.chain_1158	2
scaffold_28	starts_in_intron	2268295	2268295	-	asmbl_37346,asmbl_37348	none	blat.proc3829901.chain_2467,blat.proc3829901.chain_2470	2	STRG.29380.1,blat.proc3829901.chain_2466,blat.proc3829901.chain_2468,blat.proc3829901.chain_2469	4
scaffold_27	alt_acceptor	9431799	9431800	-	asmbl_37092,asmbl_37093	none	STRG.29170.1,STRG.29170.3,blat.proc3829901.chain_2275,blat.proc3829901.chain_2276	4	STRG.29170.2	1
scaffold_24	spliced_intron	2744728	2744809	+	asmbl_32117	none	STRG.26464.4	1	STRG.26464.3	1
scaffold_10	alternate_exon	4049896	4050009	+	asmbl_4383	none	Trinity_GG_6793_c1_g1_i3,blat.proc3829877.chain_910	2	STRG.12236.2	1
scaffold_20	starts_in_intron	10857617	10857617	+	asmbl_26152	none	Trinity_GG_13067_c0_g1_i4,blat.proc3829883.chain_746	2	STRG.23601.1,Trinity_GG_13067_c0_g1_i1,Trinity_GG_13067_c0_g1_i3,blat.proc3829883.chain_745,blat.proc3829883.chain_747,blat.proc3829883.chain_748	6
scaffold_17	alt_acceptor	13959161	13959162	+	asmbl_18488	none	STRG.20873.1,blat.proc3829881.chain_1711	2	STRG.20873.2,blat.proc3829881.chain_1712	2
scaffold_8	retained_intron	12693755	12693924	+	asmbl_52323	none	blat.proc3829875.chain_2944	1	STRG.10436.1,STRG.10436.2,blat.proc3829875.chain_2945,blat.proc3829875.chain_2946,blat.proc3829875.chain_2947,blat.proc3829875.chain_2948,blat.proc3829875.chain_2949	7
scaffold_24	alternate_exon	3435579	3436774	-	asmbl_32820,asmbl_32821	none	STRG.26531.3,blat.proc3829899.chain_3590	2	STRG.26531.4	1
scaffold_3	retained_intron	14259583	14259877	+	asmbl_40462,asmbl_40464,asmbl_40467	none	STRG.3764.1,STRG.3764.4,Trinity_GG_2074_c0_g1_i1,Trinity_GG_2074_c0_g1_i4,blat.proc3829873.chain_102,blat.proc3829873.chain_103,blat.proc3829873.chain_105	7	STRG.3764.2,blat.proc3829873.chain_104	2
scaffold_12	spliced_intron	12307824	12308257	+	asmbl_8953	none	STRG.15117.5	1	STRG.15117.3,blat.proc3829877.chain_3595	2
scaffold_3	alt_acceptor	6040384	6040385	-	asmbl_38833,asmbl_38834,asmbl_38836	none	STRG.3255.1,STRG.3255.2,STRG.3255.5	3	STRG.3255.7	1
scaffold_1	spliced_intron	9306890	9306967	+	asmbl_1970,asmbl_1971	none	STRG.628.1,blat.proc3829871.chain_690,blat.proc3829871.chain_692	3	blat.proc3829871.chain_691	1
scaffold_27	alt_donor	340971	340972	-	asmbl_36625	none	STRG.28542.2,blat.proc3829901.chain_1662	2	STRG.28542.1,STRG.28542.3,blat.proc3829901.chain_1659,blat.proc3829901.chain_1660,blat.proc3829901.chain_1661	5
scaffold_2	alt_acceptor	14392460	14392461	+	asmbl_24958	none	STRG.2437.2	1	STRG.2437.1,STRG.2437.3,blat.proc3829871.chain_2618,blat.proc3829871.chain_2619	4
scaffold_1	starts_in_intron	6284586	6284586	-	asmbl_340,asmbl_342	none	blat.proc3829887.chain_330,blat.proc3829887.chain_334	2	STRG.425.1,STRG.425.2,STRG.425.3,STRG.425.4,STRG.425.6,Trinity_GG_17251_c0_g1_i12,blat.proc3829887.chain_325,blat.proc3829887.chain_328,blat.proc3829887.chain_333,blat.proc3829887.chain_335	10
scaffold_11	retained_intron	9020369	9020489	-	asmbl_6889	none	blat.proc3829893.chain_2276	1	STRG.13926.1,STRG.13926.2,blat.proc3829893.chain_2277,blat.proc3829893.chain_2278,blat.proc3829893.chain_2279	5
scaffold_17	alt_donor	6959837	6959838	-	asmbl_19050	none	STRG.20342.1,blat.proc3829897.chain_1306	2	STRG.20342.2,blat.proc3829897.chain_1307	2
scaffold_13	spliced_intron	3430216	3430310	+	asmbl_10673,asmbl_10675	none	STRG.15637.1,blat.proc3829879.chain_287,blat.proc3829879.chain_289	3	Trinity_GG_8566_c0_g1_i5,blat.proc3829879.chain_288	2
scaffold_16	retained_exon	10105152	10105224	+	asmbl_17318	none	STRG.19581.2,blat.proc3829881.chain_481	2	STRG.19581.1,blat.proc3829881.chain_479	2
scaffold_20	ends_in_intron	9962882	9962882	-	asmbl_26990	none	Trinity_GG_30138_c1_g1_i2,blat.proc3829899.chain_554	2	STRG.23526.1,STRG.23526.2,Trinity_GG_30138_c1_g1_i3,blat.proc3829899.chain_553	4
scaffold_10	spliced_intron	9546459	9546855	+	asmbl_4675	none	STRG.12692.3	1	Trinity_GG_7015_c1_g1_i1,blat.proc3829877.chain_1287	2
scaffold_6	starts_in_intron	9063072	9063072	+	asmbl_47132	none	Trinity_GG_4270_c0_g1_i1,blat.proc3829875.chain_157	2	STRG.7775.1,blat.proc3829875.chain_158	2
scaffold_4	starts_in_intron	12715386	12715386	-	asmbl_41700	none	Trinity_GG_19749_c0_g1_i1,blat.proc3829889.chain_978	2	STRG.4911.1,STRG.4911.2,blat.proc3829889.chain_977,blat.proc3829889.chain_979	4
scaffold_22	retained_intron	4345965	4346077	+	asmbl_29275	none	STRG.24835.2,blat.proc3829883.chain_1862	2	STRG.24835.3,blat.proc3829883.chain_1863	2
scaffold_10	retained_intron	5390545	5390782	+	asmbl_4445,asmbl_4446	none	Trinity_GG_6848_c0_g1_i3,blat.proc3829877.chain_993,blat.proc3829877.chain_994	3	STRG.12356.2	1
scaffold_15	alternate_exon	15346095	15346145	+	asmbl_14702	none	STRG.18908.3	1	STRG.18908.2	1
scaffold_12	alt_donor	12285623	12285624	-	asmbl_7982	none	STRG.15111.1,blat.proc3829893.chain_3508,blat.proc3829893.chain_3509	3	STRG.15111.3	1
scaffold_18	alt_donor	7795790	7795791	-	asmbl_20015	none	STRG.21474.1,Trinity_GG_29019_c0_g1_i1,blat.proc3829897.chain_2305	3	STRG.21474.2,Trinity_GG_29019_c0_g1_i2,blat.proc3829897.chain_2304	3
scaffold_8	alt_donor	5757276	5757277	+	asmbl_51892	none	STRG.9985.2	1	STRG.9985.1,Trinity_GG_5559_c0_g1_i1,blat.proc3829875.chain_2487	3
scaffold_15	retained_exon	149590	149655	-	asmbl_14920,asmbl_14922	none	STRG.17865.2,blat.proc3829895.chain_2599	2	STRG.17865.5	1
scaffold_26	retained_exon	4142272	4142305	+	asmbl_35400	none	STRG.28106.2	1	STRG.28106.1,STRG.28106.3,STRG.28106.4	3
scaffold_9	alt_donor	4901122	4901123	+	asmbl_53952	none	STRG.11054.1,blat.proc3829875.chain_3544	2	STRG.11054.2	1
scaffold_9	alt_acceptor	15212303	15212304	-	asmbl_55475,asmbl_55476	none	STRG.11719.1,STRG.11719.2,blat.proc3829893.chain_58,blat.proc3829893.chain_59	4	STRG.11719.3	1
scaffold_10	alt_acceptor	759623	759624	-	asmbl_2920	none	STRG.11950.2	1	STRG.11950.1,blat.proc3829893.chain_422	2
scaffold_6	skipped_exon	2844284	2844733	-	asmbl_48115,asmbl_48116	none	STRG.7273.2,STRG.7273.3,blat.proc3829889.chain_3202,blat.proc3829889.chain_3205	4	STRG.7273.1,blat.proc3829889.chain_3204	2
scaffold_11	retained_intron	170652	171007	+	asmbl_5219	none	STRG.13231.3	1	STRG.13231.1,STRG.13231.2,STRG.13231.4	3
scaffold_3	spliced_intron	15781656	15781744	-	asmbl_39397,asmbl_39399	none	STRG.3856.1,STRG.3856.2,blat.proc3829887.chain_3691	3	blat.proc3829887.chain_3690	1
scaffold_6	spliced_intron	17670897	17672065	+	asmbl_47710,asmbl_47712	none	STRG.8454.1,Trinity_GG_4651_c0_g1_i2,Trinity_GG_4651_c0_g1_i5,blat.proc3829875.chain_847,blat.proc3829875.chain_850	5	STRG.8454.2,Trinity_GG_4651_c0_g1_i4,blat.proc3829875.chain_848,blat.proc3829875.chain_849	4
scaffold_19	spliced_intron	12246328	12246698	-	asmbl_21681,asmbl_21683,asmbl_21685	none	STRG.22540.1,Trinity_GG_29555_c0_g1_i1,Trinity_GG_29555_c0_g1_i2,Trinity_GG_29555_c0_g1_i5,blat.proc3829897.chain_3241,blat.proc3829897.chain_3244,blat.proc3829897.chain_3246	7	STRG.22540.2,Trinity_GG_29555_c0_g1_i6,Trinity_GG_29555_c0_g1_i7,Trinity_GG_29555_c0_g1_i8,blat.proc3829897.chain_3242,blat.proc3829897.chain_3245,blat.proc3829897.chain_3247	7
scaffold_5	ends_in_intron	16313563	16313563	+	asmbl_44742	none	blat.proc3829873.chain_2897	1	STRG.6820.1,blat.proc3829873.chain_2898,blat.proc3829873.chain_2899,blat.proc3829873.chain_2901	4
scaffold_24	ends_in_intron	8896538	8896538	-	asmbl_33110	none	blat.proc3829901.chain_195	1	STRG.26892.1	1
scaffold_12	ends_in_intron	9002007	9002007	-	asmbl_7763	none	blat.proc3829893.chain_3267	1	STRG.14892.1,Trinity_GG_25309_c0_g1_i2,blat.proc3829893.chain_3266	3
scaffold_6	alt_donor	878147	878148	+	asmbl_46637	none	STRG.7151.3	1	STRG.7151.2	1
scaffold_15	starts_in_intron	13042611	13042611	+	asmbl_14562	none	Trinity_GG_10288_c0_g1_i4,blat.proc3829879.chain_3346	2	STRG.18730.1,Trinity_GG_10288_c0_g1_i1,blat.proc3829879.chain_3345,blat.proc3829879.chain_3347	4
scaffold_13	spliced_intron	8955171	8955244	+	asmbl_11151	none	blat.proc3829879.chain_861	1	STRG.16151.1,blat.proc3829879.chain_862	2
scaffold_10	skipped_exon	9003426	9004232	+	asmbl_4631	none	STRG.12637.4	1	STRG.12637.1,STRG.12637.2,blat.proc3829877.chain_1127,blat.proc3829877.chain_1128	4
scaffold_13	skipped_exon	9180594	9180908	-	asmbl_9964	none	STRG.16158.2,blat.proc3829895.chain_927	2	STRG.16158.1,blat.proc3829895.chain_928	2
scaffold_1	alt_acceptor	18033265	18033266	-	asmbl_1079,asmbl_1080	none	STRG.1267.2,STRG.1267.3	2	STRG.1267.1,Trinity_GG_17699_c0_g1_i1,blat.proc3829887.chain_1168	3
scaffold_228	starts_in_intron	4953	4953	-	asmbl_30579	none	blat.proc3829901.chain_3291	1	STRG.30221.1,STRG.30221.2,blat.proc3829901.chain_3286,blat.proc3829901.chain_3287	4
scaffold_7	alternate_exon	7026049	7026226	+	asmbl_50777	none	STRG.8951.1,blat.proc3829875.chain_1378	2	STRG.8951.2,blat.proc3829875.chain_1377	2
scaffold_11	alt_donor	848293	848294	+	asmbl_5260	none	STRG.13269.1,blat.proc3829877.chain_1787	2	STRG.13269.2	1
scaffold_2	alternate_exon	17464655	17464717	+	asmbl_25203	none	STRG.2629.1,blat.proc3829871.chain_2849	2	blat.proc3829871.chain_2850	1
scaffold_18	starts_in_intron	12482249	12482249	+	asmbl_20990	none	blat.proc3829881.chain_2665	1	STRG.21705.1,blat.proc3829881.chain_2664	2
scaffold_8	alternate_exon	3616450	3616515	+	asmbl_51779	none	STRG.9854.4	1	STRG.9854.1,STRG.9854.2,STRG.9854.3,blat.proc3829875.chain_2278,blat.proc3829875.chain_2279	5
scaffold_14	starts_in_intron	10412087	10412087	-	asmbl_13402,asmbl_13403	none	blat.proc3829895.chain_2086,blat.proc3829895.chain_2087,blat.proc3829895.chain_2088	3	STRG.17378.1	1
scaffold_10	retained_exon	1292231	1292299	+	asmbl_4208	none	STRG.12009.2	1	STRG.12009.1,blat.proc3829877.chain_668	2
scaffold_19	retained_intron	13007510	13007898	+	asmbl_22646	none	Trinity_GG_12510_c0_g1_i12,blat.proc3829881.chain_3580	2	STRG.22609.2,Trinity_GG_12510_c0_g1_i1,Trinity_GG_12510_c0_g1_i10,Trinity_GG_12510_c0_g1_i11,blat.proc3829881.chain_3578,blat.proc3829881.chain_3583,blat.proc3829881.chain_3585	7
scaffold_10	starts_in_intron	11127946	11127946	+	asmbl_4731	none	Trinity_GG_7041_c0_g1_i3,blat.proc3829877.chain_1344	2	STRG.12771.1,blat.proc3829877.chain_1342,blat.proc3829877.chain_1343	3
scaffold_17	alternate_exon	3959344	3960525	-	asmbl_18872	none	STRG.20139.1,blat.proc3829897.chain_1064	2	STRG.20139.2,blat.proc3829897.chain_1065	2
scaffold_16	alternate_exon	5958330	5958513	+	asmbl_17043	none	STRG.19319.1	1	STRG.19319.2,STRG.19319.3,Trinity_GG_10571_c1_g1_i2,blat.proc3829881.chain_166,blat.proc3829881.chain_167	5
scaffold_8	spliced_intron	9870650	9870745	+	asmbl_52102,asmbl_52103	none	STRG.10225.5,STRG.10225.6	2	blat.proc3829875.chain_2695	1
scaffold_11	alternate_exon	8478806	8478871	+	asmbl_5748	none	Trinity_GG_7647_c0_g1_i4,blat.proc3829877.chain_2359	2	STRG.13851.2,Trinity_GG_7647_c0_g1_i2,Trinity_GG_7647_c0_g1_i3,blat.proc3829877.chain_2360,blat.proc3829877.chain_2363	5
scaffold_6	skipped_exon	8586032	8587723	+	asmbl_47098	none	STRG.7733.2	1	STRG.7733.1,Trinity_GG_4242_c0_g1_i1,blat.proc3829875.chain_97,blat.proc3829875.chain_99	4
scaffold_5	spliced_intron	14537738	14537847	+	asmbl_44608	none	STRG.6639.1,blat.proc3829873.chain_2724	2	STRG.6639.2,blat.proc3829873.chain_2725	2
scaffold_9	ends_in_intron	7608847	7608847	-	asmbl_55073	none	STRG.11208.2,blat.proc3829891.chain_3356	2	STRG.11208.1,blat.proc3829891.chain_3355	2
scaffold_13	starts_in_intron	2343235	2343235	+	asmbl_10568	none	blat.proc3829879.chain_165	1	STRG.15543.3,STRG.15543.4,STRG.15543.6,STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_156,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161,blat.proc3829879.chain_162	14
scaffold_11	alt_acceptor	3764044	3764045	+	asmbl_5421	none	STRG.13487.3	1	STRG.13487.1,STRG.13487.2,blat.proc3829877.chain_1919	3
scaffold_16	spliced_intron	11596511	11596915	-	asmbl_16530	none	STRG.19665.2	1	STRG.19665.1,blat.proc3829897.chain_642,blat.proc3829897.chain_643	3
scaffold_17	alt_donor	11590100	11590101	-	asmbl_19334	none	blat.proc3829897.chain_1658	1	STRG.20694.1,blat.proc3829897.chain_1657	2
scaffold_5	alt_donor	9811748	9811749	+	asmbl_44311,asmbl_44314	none	STRG.6289.3,STRG.6289.5	2	STRG.6289.2,STRG.6289.4,blat.proc3829873.chain_2412	3
scaffold_14	ends_in_intron	9995118	9995118	+	asmbl_12291	none	blat.proc3829879.chain_2083	1	STRG.17352.3,blat.proc3829879.chain_2080,blat.proc3829879.chain_2081	3
scaffold_21	alt_acceptor	8278483	8278484	+	asmbl_28821	none	STRG.24353.3	1	STRG.24353.1,STRG.24353.2	2
scaffold_14	retained_intron	2895797	2895880	+	asmbl_11863	none	Trinity_GG_9280_c0_g1_i2,blat.proc3829879.chain_1583	2	STRG.16871.1,blat.proc3829879.chain_1584	2
scaffold_13	spliced_intron	3734866	3734962	+	asmbl_10710,asmbl_10711,asmbl_10712,asmbl_10713,asmbl_10714,asmbl_10717	none	STRG.15686.1,STRG.15686.2,STRG.15686.3,Trinity_GG_8631_c0_g1_i4,Trinity_GG_8631_c0_g1_i6,Trinity_GG_8631_c0_g1_i8,blat.proc3829879.chain_390,blat.proc3829879.chain_393,blat.proc3829879.chain_394,blat.proc3829879.chain_395,blat.proc3829879.chain_396	11	blat.proc3829879.chain_389	1
scaffold_2	ends_in_intron	5184345	5184345	-	asmbl_23160	none	Trinity_GG_18116_c0_g1_i2	1	STRG.1936.1,STRG.1936.2,blat.proc3829887.chain_1855,blat.proc3829887.chain_1859,blat.proc3829887.chain_1860	5
scaffold_25	ends_in_intron	6297982	6297982	-	asmbl_34317	none	Trinity_GG_32428_c0_g1_i1,blat.proc3829901.chain_821	2	blat.proc3829901.chain_820	1
scaffold_1	alt_acceptor	4590121	4590122	-	asmbl_217	none	STRG.281.3	1	STRG.281.1,STRG.281.2,Trinity_GG_17136_c0_g1_i1,blat.proc3829887.chain_102	4
scaffold_26	spliced_intron	9083581	9083738	-	asmbl_35034,asmbl_35035	none	STRG.28453.2,STRG.28453.4,blat.proc3829901.chain_1595	3	STRG.28453.1,blat.proc3829901.chain_1598	2
scaffold_3	alt_donor	17834027	17834028	+	asmbl_40662	none	blat.proc3829873.chain_397	1	STRG.3994.1,STRG.3994.2,blat.proc3829873.chain_398,blat.proc3829873.chain_400	4
scaffold_25	retained_exon	401316	401327	+	asmbl_33320	none	blat.proc3829885.chain_168	1	STRG.27066.1,blat.proc3829885.chain_167	2
scaffold_27	starts_in_intron	3961074	3961074	+	asmbl_36200	none	blat.proc3829885.chain_1927	1	STRG.28841.1,blat.proc3829885.chain_1928	2
scaffold_5	alt_donor	768213	768214	+	asmbl_43761	none	STRG.5618.2	1	STRG.5618.1	1
scaffold_23	alt_donor	6630269	6630270	+	asmbl_30931,asmbl_30934	none	STRG.25985.1,blat.proc3829883.chain_2814	2	STRG.25985.2,blat.proc3829883.chain_2813,blat.proc3829883.chain_2815,blat.proc3829883.chain_2816,blat.proc3829883.chain_2817	5
scaffold_22	ends_in_intron	505539	505539	-	asmbl_29851,asmbl_29852,asmbl_29853,asmbl_29855,asmbl_29860,asmbl_29861,asmbl_29868	none	STRG.24685.3,STRG.24685.4,STRG.24685.5,Trinity_GG_30818_c0_g1_i13,Trinity_GG_30818_c0_g1_i15,Trinity_GG_30818_c0_g1_i17,Trinity_GG_30818_c0_g1_i19,Trinity_GG_30818_c0_g1_i7,Trinity_GG_30818_c0_g1_i8,blat.proc3829899.chain_1825,blat.proc3829899.chain_1827,blat.proc3829899.chain_1828,blat.proc3829899.chain_1830,blat.proc3829899.chain_1832,blat.proc3829899.chain_1836	15	STRG.24685.2,blat.proc3829899.chain_1823,blat.proc3829899.chain_1824,blat.proc3829899.chain_1831,blat.proc3829899.chain_1834	5
scaffold_27	starts_in_intron	626436	626436	-	asmbl_36652	none	blat.proc3829901.chain_1750	1	STRG.28563.1,STRG.28563.2,STRG.28563.3,STRG.28563.4,blat.proc3829901.chain_1749,blat.proc3829901.chain_1752,blat.proc3829901.chain_1754	7
scaffold_4	skipped_exon	7150686	7152429	+	asmbl_42807	none	STRG.4558.1	1	STRG.4558.4,blat.proc3829873.chain_882,blat.proc3829873.chain_883,blat.proc3829873.chain_884	4
scaffold_17	alt_acceptor	14546319	14546320	+	asmbl_18529,asmbl_18532	none	STRG.20918.3,STRG.20918.4,blat.proc3829881.chain_1763	3	STRG.20918.1,STRG.20918.5	2
scaffold_11	ends_in_intron	8719066	8719066	-	asmbl_6856	none	Trinity_GG_24779_c0_g2_i1	1	STRG.13887.1,blat.proc3829893.chain_2332,blat.proc3829893.chain_2333	3
scaffold_28	spliced_intron	575733	575994	-	asmbl_37240,asmbl_37243	none	STRG.29265.1,STRG.29265.2,blat.proc3829901.chain_2355	3	STRG.29265.3,blat.proc3829901.chain_2356	2
scaffold_8	retained_exon	10586224	10586334	-	asmbl_53110	none	STRG.10285.2	1	STRG.10285.1,blat.proc3829891.chain_2354	2
scaffold_12	spliced_intron	6396998	6397091	-	asmbl_7660	none	STRG.14724.1,blat.proc3829893.chain_3147	2	blat.proc3829893.chain_3146	1
scaffold_15	alt_donor	6961151	6961152	+	asmbl_14213	none	STRG.18295.2	1	STRG.18295.1,blat.proc3829879.chain_2930,blat.proc3829879.chain_2933	3
scaffold_18	ends_in_intron	10487891	10487891	-	asmbl_20145	none	STRG.21640.2,blat.proc3829897.chain_2464	2	STRG.21640.1,Trinity_GG_29108_c0_g1_i1,blat.proc3829897.chain_2465	3
scaffold_67	retained_intron	6653	6754	-	asmbl_49449	none	STRG.30081.1,blat.proc3829901.chain_3180	2	STRG.30081.2	1
scaffold_19	alternate_exon	13131717	13138571	-	asmbl_21820	none	STRG.22621.1,blat.proc3829897.chain_3390	2	STRG.22621.2,Trinity_GG_29613_c0_g1_i1,blat.proc3829897.chain_3400	3
scaffold_6	retained_exon	16605135	16605330	+	asmbl_47648	none	STRG.8378.3	1	STRG.8378.1	1
scaffold_8	skipped_exon	12320740	12321136	-	asmbl_53192,asmbl_53194	none	STRG.10399.2,blat.proc3829891.chain_2529	2	STRG.10399.1,blat.proc3829891.chain_2530,blat.proc3829891.chain_2531	3
scaffold_4	spliced_intron	16912206	16912455	+	asmbl_43348	none	STRG.5280.4	1	STRG.5280.3	1
scaffold_27	retained_intron	1419227	1419252	+	asmbl_35963,asmbl_35966	none	STRG.28618.3,Trinity_GG_15851_c0_g1_i2	2	STRG.28618.1,STRG.28618.2	2
scaffold_3	spliced_intron	16006545	16006633	-	asmbl_39417	none	STRG.3874.1,blat.proc3829887.chain_3673	2	Trinity_GG_19148_c0_g1_i3,blat.proc3829887.chain_3671	2
scaffold_2	retained_intron	16288921	16289287	+	asmbl_25140,asmbl_25141,asmbl_25143	none	blat.proc3829871.chain_2749,blat.proc3829871.chain_2751,blat.proc3829871.chain_2752	3	STRG.2560.1,STRG.2560.2,blat.proc3829871.chain_2750	3
scaffold_24	alternate_exon	5322574	5322619	-	asmbl_32885	none	STRG.26603.1,blat.proc3829899.chain_3671	2	STRG.26603.2	1
scaffold_11	retained_intron	8074409	8074589	-	asmbl_6806,asmbl_6815,asmbl_6817	none	blat.proc3829893.chain_2198,blat.proc3829893.chain_2206,blat.proc3829893.chain_2209	3	STRG.13802.1,STRG.13802.2,Trinity_GG_24711_c0_g1_i17,Trinity_GG_24711_c0_g1_i18,Trinity_GG_24711_c0_g1_i3,Trinity_GG_24711_c0_g1_i5,Trinity_GG_24711_c0_g1_i8,blat.proc3829893.chain_2197,blat.proc3829893.chain_2201,blat.proc3829893.chain_2204,blat.proc3829893.chain_2205,blat.proc3829893.chain_2211	12
scaffold_6	spliced_intron	17886425	17886597	+	asmbl_47739	none	Trinity_GG_4642_c0_g1_i2,blat.proc3829875.chain_832	2	STRG.8475.2,Trinity_GG_4642_c0_g1_i4,blat.proc3829875.chain_830	3
scaffold_6	alternate_exon	2755440	2755712	+	asmbl_46718,asmbl_46719	none	STRG.7264.2,STRG.7264.4	2	STRG.7264.6,Trinity_GG_3999_c0_g1_i2	2
scaffold_17	alt_acceptor	11959250	11959251	-	asmbl_19349,asmbl_19351	none	STRG.20711.2,STRG.20711.3,blat.proc3829897.chain_1669	3	blat.proc3829897.chain_1671	1
scaffold_27	alt_donor	1550287	1550288	+	asmbl_35981,asmbl_35986	none	STRG.28623.1,STRG.28623.2,Trinity_GG_15852_c0_g1_i3,blat.proc3829885.chain_1669	4	Trinity_GG_15852_c0_g1_i5,blat.proc3829885.chain_1670	2
scaffold_14	alternate_exon	15399083	15400300	-	asmbl_13703	none	STRG.17757.1,blat.proc3829895.chain_2485	2	STRG.17757.2,blat.proc3829895.chain_2486	2
scaffold_22	spliced_intron	6128541	6128687	+	asmbl_29398	none	STRG.24955.7	1	STRG.24955.6,Trinity_GG_13800_c1_g2_i2,blat.proc3829883.chain_2004	3
scaffold_22	alternate_exon	5959427	5959536	-	asmbl_30064	none	STRG.24930.1,blat.proc3829899.chain_2039	2	blat.proc3829899.chain_2040	1
scaffold_16	retained_intron	3707062	3707156	+	asmbl_16938	none	Trinity_GG_10516_c0_g1_i4,blat.proc3829881.chain_37	2	STRG.19166.1,blat.proc3829881.chain_33,blat.proc3829881.chain_35,blat.proc3829881.chain_36	4
scaffold_26	starts_in_intron	3047414	3047414	-	asmbl_34742	none	Trinity_GG_32663_c0_g1_i1	1	STRG.27975.1,STRG.27975.3	2
scaffold_16	spliced_intron	8070830	8070976	-	asmbl_16401	none	STRG.19439.1,Trinity_GG_27939_c0_g1_i1	2	Trinity_GG_27939_c0_g1_i2,blat.proc3829897.chain_495	2
scaffold_18	spliced_intron	370096	370294	-	asmbl_19610,asmbl_19617,asmbl_19618	none	STRG.20979.1,blat.proc3829897.chain_1876,blat.proc3829897.chain_1878,blat.proc3829897.chain_1879	4	blat.proc3829897.chain_1875	1
scaffold_20	retained_intron	4510126	4510257	-	asmbl_26667	none	blat.proc3829899.chain_45	1	STRG.23117.1,blat.proc3829899.chain_43	2
scaffold_2	retained_intron	4578060	4578717	+	asmbl_24378	none	STRG.1884.1,Trinity_GG_1044_c1_g1_i3,blat.proc3829871.chain_1914	3	STRG.1884.2,Trinity_GG_1044_c1_g1_i4,blat.proc3829871.chain_1915,blat.proc3829871.chain_1916,blat.proc3829871.chain_1917	5
scaffold_1	retained_exon	6015714	6015786	+	asmbl_1809,asmbl_1810	none	STRG.406.1,blat.proc3829871.chain_484,blat.proc3829871.chain_485	3	blat.proc3829871.chain_486	1
scaffold_10	starts_in_intron	7768295	7768295	-	asmbl_3465,asmbl_3467	none	STRG.12555.2,blat.proc3829893.chain_1041	2	STRG.12555.1,blat.proc3829893.chain_1044	2
scaffold_2	retained_intron	7827162	7827319	-	asmbl_23305	none	STRG.2079.3,Trinity_GG_18172_c0_g1_i1,blat.proc3829887.chain_1976	3	STRG.2079.2,Trinity_GG_18172_c0_g1_i3,blat.proc3829887.chain_1977	3
scaffold_2	skipped_exon	14014078	14014694	-	asmbl_23571	none	STRG.2393.2,Trinity_GG_18353_c0_g1_i2,blat.proc3829887.chain_2283	3	STRG.2393.1,Trinity_GG_18353_c0_g1_i1,blat.proc3829887.chain_2282	3
scaffold_9	ends_in_intron	13282636	13282636	-	asmbl_55378	none	Trinity_GG_23411_c0_g1_i1,blat.proc3829891.chain_3708	2	STRG.11616.1,blat.proc3829891.chain_3707	2
scaffold_14	retained_intron	2374520	2375890	-	asmbl_12913,asmbl_12914,asmbl_12921	none	STRG.16839.2,STRG.16839.6,Trinity_GG_26463_c0_g1_i6,blat.proc3829895.chain_1585,blat.proc3829895.chain_1588	5	STRG.16839.5,blat.proc3829895.chain_1581	2
scaffold_13	alternate_exon	1519188	1520389	-	asmbl_9376,asmbl_9377	none	STRG.15500.1,STRG.15500.2,Trinity_GG_25702_c0_g1_i5,Trinity_GG_25703_c0_g1_i1,blat.proc3829895.chain_260,blat.proc3829895.chain_263	6	STRG.15500.3	1
scaffold_13	alt_acceptor	6802315	6802316	+	asmbl_10962,asmbl_10965	none	STRG.15957.2,blat.proc3829879.chain_659	2	STRG.15957.1,blat.proc3829879.chain_658,blat.proc3829879.chain_660	3
scaffold_2	starts_in_intron	6765802	6765802	+	asmbl_24518	none	Trinity_GG_1102_c0_g1_i8,blat.proc3829871.chain_2009	2	STRG.2035.1,Trinity_GG_1102_c0_g1_i1,Trinity_GG_1102_c0_g1_i11,Trinity_GG_1102_c0_g1_i2,Trinity_GG_1102_c0_g1_i4,Trinity_GG_1102_c0_g1_i5,Trinity_GG_1102_c0_g1_i7,blat.proc3829871.chain_2005,blat.proc3829871.chain_2008,blat.proc3829871.chain_2010,blat.proc3829871.chain_2011,blat.proc3829871.chain_2012,blat.proc3829871.chain_2013	13
scaffold_13	alt_donor	5805511	5805512	+	asmbl_10885	none	blat.proc3829879.chain_647	1	STRG.15880.4	1
scaffold_13	alt_donor	7997265	7997266	-	asmbl_9887,asmbl_9891	none	STRG.16065.3,blat.proc3829895.chain_785,blat.proc3829895.chain_787	3	STRG.16065.1,STRG.16065.2,blat.proc3829895.chain_788,blat.proc3829895.chain_789	4
scaffold_27	alt_acceptor	4939041	4939042	+	asmbl_36285	none	STRG.28914.6	1	STRG.28914.1,STRG.28914.2,STRG.28914.3,STRG.28914.4,STRG.28914.5,blat.proc3829885.chain_2065,blat.proc3829885.chain_2066	7
scaffold_5	retained_intron	4696426	4696551	+	asmbl_43951	none	STRG.5917.1	1	STRG.5917.4	1
scaffold_5	alt_acceptor	5169337	5169338	-	asmbl_45422	none	STRG.5961.2	1	STRG.5961.1	1
scaffold_6	skipped_exon	19115800	19116613	-	asmbl_49234	none	STRG.8568.3,Trinity_GG_21904_c0_g1_i1,blat.proc3829891.chain_898	3	STRG.8568.1,Trinity_GG_21904_c0_g1_i3,blat.proc3829891.chain_897	3
scaffold_5	spliced_intron	15305751	15305837	+	asmbl_44651,asmbl_44652	none	STRG.6715.1,Trinity_GG_3658_c0_g1_i1,Trinity_GG_3658_c0_g1_i2,blat.proc3829873.chain_2816,blat.proc3829873.chain_2817	5	STRG.6715.2	1
scaffold_15	ends_in_intron	488854	488854	+	asmbl_13919	none	blat.proc3829879.chain_2568	1	STRG.17895.1,blat.proc3829879.chain_2567	2
scaffold_11	alternate_exon	7048375	7048791	+	asmbl_5611,asmbl_5614,asmbl_5616	none	STRG.13722.3,Trinity_GG_7553_c0_g1_i1,Trinity_GG_7553_c0_g1_i5,Trinity_GG_7553_c0_g1_i8,blat.proc3829877.chain_2193,blat.proc3829877.chain_2195,blat.proc3829877.chain_2197	7	STRG.13722.1,Trinity_GG_7553_c0_g1_i3,Trinity_GG_7553_c0_g1_i7,blat.proc3829877.chain_2194,blat.proc3829877.chain_2196	5
scaffold_19	alt_acceptor	13134673	13134674	-	asmbl_21821	none	blat.proc3829897.chain_3401	1	STRG.22621.1	1
scaffold_12	alt_donor	7422853	7422854	-	asmbl_7713	none	STRG.14807.2,blat.proc3829893.chain_3199	2	blat.proc3829893.chain_3198	1
scaffold_13	retained_exon	1380204	1380337	-	asmbl_9366,asmbl_9369	none	STRG.15491.2,blat.proc3829895.chain_208,blat.proc3829895.chain_210	3	blat.proc3829895.chain_207,blat.proc3829895.chain_209	2
scaffold_3	spliced_intron	2264175	2264205	+	asmbl_39858	none	STRG.3020.1	1	Trinity_GG_1718_c0_g1_i1,blat.proc3829871.chain_3208	2
scaffold_25	retained_intron	1906533	1906576	-	asmbl_34042	none	STRG.27182.4	1	STRG.27182.3	1
scaffold_7	retained_intron	5910425	5910739	-	asmbl_49709	none	STRG.8884.1,blat.proc3829891.chain_1219	2	STRG.8884.2	1
scaffold_18	retained_intron	3220749	3220823	+	asmbl_20479	none	blat.proc3829881.chain_2033	1	STRG.21153.1,blat.proc3829881.chain_2034	2
scaffold_2	skipped_exon	10137083	10139477	+	asmbl_24734	none	STRG.2203.1,blat.proc3829871.chain_2326	2	STRG.2203.2,STRG.2203.3,blat.proc3829871.chain_2325,blat.proc3829871.chain_2327	4
scaffold_21	retained_exon	9840618	9840825	+	asmbl_28858	none	STRG.24424.1,blat.proc3829883.chain_1514	2	blat.proc3829883.chain_1513	1
scaffold_5	alternate_exon	12395959	12396007	+	asmbl_44472	none	blat.proc3829873.chain_2631	1	STRG.6478.1,blat.proc3829873.chain_2632	2
scaffold_3	starts_in_intron	6167531	6167531	-	asmbl_38854	none	Trinity_GG_18753_c1_g1_i4,blat.proc3829887.chain_2943	2	blat.proc3829887.chain_2941,blat.proc3829887.chain_2942,blat.proc3829887.chain_2944,blat.proc3829887.chain_2945,blat.proc3829887.chain_2946	5
scaffold_23	ends_in_intron	3512131	3512131	-	asmbl_31524	none	Trinity_GG_31429_c0_g1_i6,blat.proc3829899.chain_2894	2	STRG.25754.1,STRG.25754.2,blat.proc3829899.chain_2890,blat.proc3829899.chain_2893,blat.proc3829899.chain_2895	5
scaffold_19	alt_acceptor	3684356	3684357	+	asmbl_22131	none	STRG.22046.8,blat.proc3829881.chain_3002	2	STRG.22046.1,STRG.22046.6,STRG.22046.7	3
scaffold_2	alt_donor	6761641	6761642	-	asmbl_23258	none	STRG.2030.2,blat.proc3829887.chain_1920	2	STRG.2030.1,STRG.2030.4,blat.proc3829887.chain_1919	3
scaffold_16	skipped_exon	8644417	8645904	+	asmbl_17227	none	STRG.19479.5,blat.proc3829881.chain_361	2	STRG.19479.1,STRG.19479.3,STRG.19479.4,blat.proc3829881.chain_362	4
scaffold_5	spliced_intron	10968500	10969203	+	asmbl_44383	none	STRG.6366.1,blat.proc3829873.chain_2526	2	STRG.6366.2,blat.proc3829873.chain_2527,blat.proc3829873.chain_2528	3
scaffold_10	alternate_exon	7606109	7608881	-	asmbl_3460	none	STRG.12545.1,STRG.12545.3,Trinity_GG_24017_c1_g1_i1,Trinity_GG_24017_c2_g1_i1,blat.proc3829893.chain_1018,blat.proc3829893.chain_1019,blat.proc3829893.chain_1020,blat.proc3829893.chain_971	8	STRG.12545.2,blat.proc3829893.chain_972	2
scaffold_6	ends_in_intron	13168949	13168949	-	asmbl_48825	none	Trinity_GG_21606_c0_g1_i8,blat.proc3829891.chain_384	2	STRG.8067.1,STRG.8067.2,blat.proc3829891.chain_381,blat.proc3829891.chain_382,blat.proc3829891.chain_383	5
scaffold_24	starts_in_intron	6224561	6224561	-	asmbl_32928,asmbl_32939	none	blat.proc3829899.chain_3691,blat.proc3829899.chain_3694	2	STRG.26664.1,blat.proc3829899.chain_3686,blat.proc3829899.chain_3687,blat.proc3829899.chain_3690,blat.proc3829899.chain_3693,blat.proc3829899.chain_3695,blat.proc3829899.chain_3696	7
scaffold_11	spliced_intron	17277488	17277700	-	asmbl_7238	none	Trinity_GG_25035_c1_g1_i1	1	Trinity_GG_25035_c1_g1_i2,blat.proc3829893.chain_2790	2
scaffold_16	spliced_intron	6198531	6198916	+	asmbl_17096	none	STRG.19374.1	1	STRG.19374.2,blat.proc3829881.chain_202	2
scaffold_26	alternate_exon	9608494	9608765	+	asmbl_35770	none	STRG.28493.2	1	STRG.28493.3	1
scaffold_16	alternate_exon	11337137	11337885	+	asmbl_17384	none	STRG.19652.2	1	STRG.19652.3,Trinity_GG_10789_c0_g1_i2	2
scaffold_16	retained_intron	8875480	8875517	-	asmbl_16440	none	STRG.19495.1,blat.proc3829897.chain_460	2	STRG.19495.2	1
scaffold_23	spliced_intron	2585757	2588165	-	asmbl_31461	none	STRG.25705.2,blat.proc3829899.chain_2749	2	STRG.25705.1,Trinity_GG_31351_c1_g1_i4,blat.proc3829899.chain_2747,blat.proc3829899.chain_2751	4
scaffold_20	skipped_exon	6655139	6656436	-	asmbl_26764	none	blat.proc3829899.chain_283	1	STRG.23227.1,STRG.23227.2,blat.proc3829899.chain_281,blat.proc3829899.chain_284	4
scaffold_25	starts_in_intron	4522150	4522150	-	asmbl_34185	none	STRG.27369.2,blat.proc3829901.chain_682	2	STRG.27369.1,blat.proc3829901.chain_680,blat.proc3829901.chain_681	3
scaffold_7	retained_intron	12259661	12259956	+	asmbl_51105	none	STRG.9311.1,Trinity_GG_5126_c0_g1_i3,blat.proc3829875.chain_1684	3	Trinity_GG_5126_c0_g1_i1,blat.proc3829875.chain_1683	2
scaffold_10	retained_intron	2787464	2787760	-	asmbl_3047,asmbl_3048	none	STRG.12096.2,Trinity_GG_23730_c0_g1_i2,blat.proc3829893.chain_516,blat.proc3829893.chain_517,blat.proc3829893.chain_518	5	STRG.12096.1,Trinity_GG_23730_c0_g1_i4,Trinity_GG_23730_c0_g1_i5,blat.proc3829893.chain_515,blat.proc3829893.chain_519	5
scaffold_18	alt_acceptor	13111887	13111888	+	asmbl_21014	none	STRG.21741.3	1	STRG.21741.1,STRG.21741.2,blat.proc3829881.chain_2715,blat.proc3829881.chain_2716	4
scaffold_1	retained_intron	14304985	14305075	+	asmbl_2355	none	blat.proc3829871.chain_1135	1	STRG.1018.1,blat.proc3829871.chain_1134	2
scaffold_14	retained_intron	8452011	8452120	-	asmbl_13298	none	Trinity_GG_26716_c0_g1_i3	1	Trinity_GG_26716_c0_g1_i2	1
scaffold_24	alt_acceptor	8118647	8118648	+	asmbl_32415	none	STRG.26841.2,blat.proc3829883.chain_3717	2	STRG.26841.1	1
scaffold_11	spliced_intron	1286462	1286567	-	asmbl_6394	none	STRG.13311.1,blat.proc3829893.chain_1749	2	blat.proc3829893.chain_1751	1
scaffold_22	alternate_exon	8395009	8395045	+	asmbl_29564	none	STRG.25172.1	1	STRG.25172.3,Trinity_GG_13931_c1_g1_i1,blat.proc3829883.chain_2218,blat.proc3829883.chain_2219	4
scaffold_7	retained_exon	12452393	12452506	-	asmbl_50040,asmbl_50042	none	STRG.9342.2,blat.proc3829891.chain_1605,blat.proc3829891.chain_1608	3	STRG.9342.4	1
scaffold_13	spliced_intron	87817	88104	+	asmbl_10428	none	STRG.15412.3,blat.proc3829879.chain_80	2	STRG.15412.1,STRG.15412.4,Trinity_GG_8476_c0_g2_i1,blat.proc3829879.chain_82	4
scaffold_5	retained_intron	4948983	4949120	+	asmbl_43983,asmbl_43985	none	STRG.5946.1,STRG.5946.2	2	STRG.5946.3	1
scaffold_27	ends_in_intron	3061930	3061930	+	asmbl_36143	none	blat.proc3829885.chain_1855	1	STRG.28771.1,STRG.28771.2,blat.proc3829885.chain_1851,blat.proc3829885.chain_1852,blat.proc3829885.chain_1854	5
scaffold_21	retained_intron	6448011	6448185	+	asmbl_28665	none	Trinity_GG_13331_c0_g1_i1,blat.proc3829883.chain_1214	2	STRG.24149.1,Trinity_GG_13331_c0_g1_i2,blat.proc3829883.chain_1213	3
scaffold_1	skipped_exon	1561810	1563955	+	asmbl_1488	none	STRG.100.1,blat.proc3829871.chain_136	2	STRG.100.2	1
scaffold_23	alt_donor	10935490	10935491	-	asmbl_31887	none	STRG.26275.1,blat.proc3829899.chain_3313	2	STRG.26275.2	1
scaffold_22	alternate_exon	960660	960685	+	asmbl_29203	none	STRG.24727.2	1	STRG.24727.1,blat.proc3829883.chain_1740	2
scaffold_6	alt_donor	12553415	12553416	-	asmbl_48760,asmbl_48763	none	STRG.8010.3,blat.proc3829891.chain_318	2	STRG.8010.2,blat.proc3829891.chain_322	2
scaffold_21	retained_intron	473831	473938	+	asmbl_28289	none	blat.proc3829883.chain_900	1	STRG.23729.1,Trinity_GG_13157_c0_g1_i4,blat.proc3829883.chain_899,blat.proc3829883.chain_901	4
scaffold_24	retained_exon	6784705	6784803	-	asmbl_32962,asmbl_32963	none	STRG.26713.2,STRG.26713.4	2	STRG.26713.1,STRG.26713.3	2
scaffold_27	spliced_intron	8919877	8919990	+	asmbl_36436	none	blat.proc3829885.chain_2246	1	STRG.29112.1,Trinity_GG_16127_c0_g1_i1,blat.proc3829885.chain_2245	3
scaffold_17	starts_in_intron	13974227	13974227	-	asmbl_19446	none	STRG.20876.2	1	STRG.20876.1,STRG.20876.4,blat.proc3829897.chain_1766	3
scaffold_28	alt_acceptor	3745701	3745702	-	asmbl_37488,asmbl_37489	none	STRG.29558.1,blat.proc3829901.chain_2664	2	STRG.29558.2	1
scaffold_8	spliced_intron	12807249	12807688	-	asmbl_53239	none	STRG.10465.2	1	STRG.10465.1,blat.proc3829891.chain_2603,blat.proc3829891.chain_2604	3
scaffold_11	retained_intron	16755265	16755293	+	asmbl_6159	none	Trinity_GG_7913_c0_g1_i1,blat.proc3829877.chain_2850	2	STRG.14357.1	1
scaffold_23	spliced_intron	2164335	2164790	-	asmbl_31423	none	STRG.25669.3	1	STRG.25669.2	1
scaffold_4	spliced_intron	16137284	16137576	-	asmbl_41892	none	STRG.5182.4,blat.proc3829889.chain_1223	2	STRG.5182.2,STRG.5182.3,blat.proc3829889.chain_1220	3
scaffold_9	retained_intron	5468453	5468592	+	asmbl_54029	none	STRG.11112.1,blat.proc3829875.chain_3568	2	STRG.11112.2,Trinity_GG_6186_c0_g1_i1,blat.proc3829875.chain_3569	3
scaffold_1	skipped_exon	6283987	6285080	-	asmbl_341,asmbl_349,asmbl_351	none	STRG.425.2,STRG.425.4,blat.proc3829887.chain_333	3	STRG.425.1,STRG.425.3,STRG.425.6,Trinity_GG_17251_c0_g1_i12,blat.proc3829887.chain_325,blat.proc3829887.chain_328,blat.proc3829887.chain_335	7
scaffold_17	starts_in_intron	2635447	2635447	+	asmbl_17804	none	Trinity_GG_10982_c0_g1_i5,blat.proc3829881.chain_874	2	STRG.20044.3,STRG.20044.4,Trinity_GG_10982_c0_g1_i2,blat.proc3829881.chain_876,blat.proc3829881.chain_878	5
scaffold_26	alt_acceptor	9774401	9774402	+	asmbl_35787	none	blat.proc3829885.chain_1535	1	STRG.28501.4	1
scaffold_1	alt_acceptor	20349210	20349211	+	asmbl_2604	none	STRG.1398.6	1	STRG.1398.2,STRG.1398.3,STRG.1398.4,STRG.1398.5	4
scaffold_27	alt_acceptor	4380725	4380726	+	asmbl_36241	none	STRG.28876.1,blat.proc3829885.chain_1988,blat.proc3829885.chain_1989	3	STRG.28876.3,blat.proc3829885.chain_1986,blat.proc3829885.chain_1987	3
scaffold_14	alt_acceptor	10406889	10406890	+	asmbl_12298	none	STRG.17376.1	1	STRG.17376.2	1
scaffold_12	spliced_intron	14289988	14290450	-	asmbl_8133	none	STRG.15255.2,blat.proc3829893.chain_3649	2	STRG.15255.3,Trinity_GG_25533_c0_g1_i4,blat.proc3829893.chain_3648,blat.proc3829893.chain_3650	4
scaffold_6	skipped_exon	3807411	3808938	+	asmbl_46807,asmbl_46810	none	STRG.7379.5,Trinity_GG_4055_c0_g1_i6,blat.proc3829873.chain_3528	3	STRG.7379.2,STRG.7379.4	2
scaffold_7	starts_in_intron	715203	715203	-	asmbl_49508,asmbl_49510	none	blat.proc3829891.chain_980,blat.proc3829891.chain_982	2	STRG.8600.1,blat.proc3829891.chain_979	2
scaffold_24	alt_acceptor	8118542	8118543	+	asmbl_32416	none	STRG.26841.1	1	STRG.26841.2,blat.proc3829883.chain_3717	2
scaffold_23	alt_acceptor	5156919	5156920	-	asmbl_31605	none	STRG.25874.2,Trinity_GG_31476_c0_g1_i1,blat.proc3829899.chain_2975	3	STRG.25874.1	1
scaffold_3	ends_in_intron	8162445	8162445	-	asmbl_38963	none	Trinity_GG_18833_c2_g2_i5,blat.proc3829887.chain_3141	2	blat.proc3829887.chain_3140,blat.proc3829887.chain_3142	2
scaffold_15	retained_intron	13327570	13327726	+	asmbl_14573,asmbl_14574	none	Trinity_GG_10264_c0_g1_i4,Trinity_GG_10264_c0_g1_i6,blat.proc3829879.chain_3297,blat.proc3829879.chain_3299	4	STRG.18763.1,blat.proc3829879.chain_3296,blat.proc3829879.chain_3298,blat.proc3829879.chain_3303,blat.proc3829879.chain_3304	5
scaffold_10	retained_intron	6867580	6867771	-	asmbl_3425,asmbl_3427	none	blat.proc3829893.chain_990,blat.proc3829893.chain_996	2	blat.proc3829893.chain_991,blat.proc3829893.chain_998	2
scaffold_4	starts_in_intron	4835330	4835330	+	asmbl_42639	none	Trinity_GG_2433_c0_g2_i2,blat.proc3829873.chain_759	2	STRG.4373.2,blat.proc3829873.chain_758	2
scaffold_15	alt_acceptor	8789453	8789454	+	asmbl_14295	none	STRG.18412.1,blat.proc3829879.chain_3020	2	STRG.18412.2	1
scaffold_9	spliced_intron	16569591	16569995	+	asmbl_54572,asmbl_54575,asmbl_54576,asmbl_54577,asmbl_54579,asmbl_54580	none	STRG.11798.1,STRG.11798.2,Trinity_GG_6586_c0_g1_i10,Trinity_GG_6586_c0_g1_i15,Trinity_GG_6586_c0_g1_i5,Trinity_GG_6586_c0_g1_i6,blat.proc3829877.chain_551,blat.proc3829877.chain_553,blat.proc3829877.chain_555,blat.proc3829877.chain_556,blat.proc3829877.chain_557	11	Trinity_GG_6586_c0_g1_i21,blat.proc3829877.chain_554	2
scaffold_27	alt_acceptor	7522240	7522241	+	asmbl_36421	none	STRG.29096.2,blat.proc3829885.chain_2227	2	STRG.29096.1,STRG.29096.3,STRG.29096.4	3
scaffold_19	alt_acceptor	8230526	8230527	+	asmbl_22305	none	STRG.22263.1,Trinity_GG_12275_c0_g1_i1,blat.proc3829881.chain_3143	3	STRG.22263.2	1
scaffold_22	alternate_exon	11343515	11344102	-	asmbl_30435	none	Trinity_GG_31247_c0_g1_i1,blat.proc3829899.chain_2551	2	blat.proc3829899.chain_2552	1
scaffold_25	retained_intron	6303359	6303523	+	asmbl_33606,asmbl_33607,asmbl_33610,asmbl_33611,asmbl_33612,asmbl_33613	none	blat.proc3829885.chain_464,blat.proc3829885.chain_467,blat.proc3829885.chain_469,blat.proc3829885.chain_470,blat.proc3829885.chain_471,blat.proc3829885.chain_472,blat.proc3829885.chain_473,blat.proc3829885.chain_474	8	STRG.27516.1,blat.proc3829885.chain_465	2
scaffold_8	alt_donor	11612954	11612955	+	asmbl_52238	none	STRG.10351.1,blat.proc3829875.chain_2811	2	STRG.10351.2	1
scaffold_10	alternate_exon	949230	949305	+	asmbl_4175	none	Trinity_GG_6645_c0_g1_i6,blat.proc3829877.chain_650	2	STRG.11969.1,STRG.11969.2,Trinity_GG_6645_c0_g1_i1,Trinity_GG_6645_c0_g1_i3,Trinity_GG_6645_c0_g1_i4,blat.proc3829877.chain_649,blat.proc3829877.chain_651,blat.proc3829877.chain_653	8
scaffold_15	alt_donor	8637626	8637627	+	asmbl_14289	none	STRG.18404.2,Trinity_GG_10093_c0_g1_i1,blat.proc3829879.chain_3016	3	STRG.18404.1,Trinity_GG_10093_c0_g1_i2,blat.proc3829879.chain_3015	3
scaffold_22	starts_in_intron	11134552	11134552	-	asmbl_30418	none	Trinity_GG_31209_c0_g1_i1	1	STRG.25427.1,blat.proc3829899.chain_2479	2
scaffold_9	starts_in_intron	3674110	3674110	-	asmbl_54890	none	blat.proc3829891.chain_3078	1	STRG.10971.1,STRG.10971.3,Trinity_GG_23073_c0_g2_i1,blat.proc3829891.chain_3074,blat.proc3829891.chain_3084,blat.proc3829891.chain_3085,blat.proc3829891.chain_3086	7
scaffold_12	alt_acceptor	14946298	14946299	-	asmbl_8146,asmbl_8148	none	STRG.15269.1,Trinity_GG_25558_c0_g1_i1,Trinity_GG_25558_c0_g1_i3,blat.proc3829893.chain_3716,blat.proc3829893.chain_3717	5	STRG.15269.2,Trinity_GG_25558_c0_g1_i2,blat.proc3829893.chain_3715	3
scaffold_17	alt_donor	5997592	5997593	+	asmbl_17964,asmbl_17965	none	STRG.20273.1,STRG.20273.2,blat.proc3829881.chain_1091	3	STRG.20273.4,STRG.20273.5	2
scaffold_17	alt_donor	10069243	10069244	+	asmbl_18293,asmbl_18295	none	STRG.20614.1,Trinity_GG_11298_c0_g1_i1,Trinity_GG_11298_c0_g1_i2,blat.proc3829881.chain_1450,blat.proc3829881.chain_1451	5	STRG.20614.2	1
scaffold_18	alt_donor	12403762	12403763	-	asmbl_20174	none	blat.proc3829897.chain_2489	1	STRG.21698.1,blat.proc3829897.chain_2490	2
scaffold_37	alt_acceptor	3846	3847	+	asmbl_41008	none	STRG.30008.2,blat.proc3829885.chain_3085	2	STRG.30008.1,blat.proc3829885.chain_3084	2
scaffold_13	alt_acceptor	6990833	6990834	+	asmbl_10990	none	STRG.15969.2,blat.proc3829879.chain_600	2	STRG.15969.1	1
scaffold_13	alternate_exon	15510894	15510981	+	asmbl_11494	none	STRG.16580.4	1	STRG.16580.1,blat.proc3829879.chain_1334,blat.proc3829879.chain_1335	3
scaffold_13	starts_in_intron	15038095	15038095	-	asmbl_10189	none	blat.proc3829895.chain_1253	1	STRG.16541.2,blat.proc3829895.chain_1254	2
scaffold_5	retained_intron	18249279	18249475	+	asmbl_44882,asmbl_44884,asmbl_44885	none	STRG.6951.1,STRG.6951.3,STRG.6951.4,Trinity_GG_3817_c0_g1_i2,blat.proc3829873.chain_3083,blat.proc3829873.chain_3085	6	STRG.6951.2,blat.proc3829873.chain_3084	2
scaffold_19	alternate_exon	11560081	11560380	-	asmbl_21633	none	STRG.22479.1,Trinity_GG_29507_c0_g1_i5,blat.proc3829897.chain_3145	3	Trinity_GG_29507_c0_g1_i3,blat.proc3829897.chain_3144	2
scaffold_5	retained_intron	6584076	6584215	-	asmbl_45494	none	blat.proc3829889.chain_2132	1	blat.proc3829889.chain_2135,blat.proc3829889.chain_2136	2
scaffold_14	retained_intron	5597207	5597301	+	asmbl_12010	none	Trinity_GG_9387_c1_g1_i5,blat.proc3829879.chain_1783	2	STRG.17026.1,blat.proc3829879.chain_1781,blat.proc3829879.chain_1782	3
scaffold_10	starts_in_intron	13471773	13471773	-	asmbl_3792	none	blat.proc3829893.chain_1417	1	STRG.12931.2,STRG.12931.3,blat.proc3829893.chain_1418,blat.proc3829893.chain_1419	4
scaffold_9	alt_acceptor	15591058	15591059	+	asmbl_54556,asmbl_54557,asmbl_54559,asmbl_54560	none	blat.proc3829877.chain_496,blat.proc3829877.chain_498,blat.proc3829877.chain_500,blat.proc3829877.chain_501	4	STRG.11739.1,blat.proc3829877.chain_497,blat.proc3829877.chain_499	3
scaffold_10	alternate_exon	1477901	1477941	+	asmbl_4226	none	STRG.12011.2,Trinity_GG_6689_c0_g1_i1,blat.proc3829877.chain_734	3	STRG.12011.1	1
scaffold_6	spliced_intron	3320771	3320929	-	asmbl_48191	none	STRG.7329.3,blat.proc3829889.chain_3341	2	blat.proc3829889.chain_3343	1
scaffold_27	alternate_exon	5682566	5686878	+	asmbl_36318	none	blat.proc3829885.chain_1996	1	STRG.28956.4,blat.proc3829885.chain_1999	2
scaffold_3	spliced_intron	935722	935829	-	asmbl_38640	none	STRG.2915.1,blat.proc3829887.chain_2737	2	Trinity_GG_18622_c0_g1_i2,blat.proc3829887.chain_2738	2
scaffold_24	spliced_intron	3026292	3026335	+	asmbl_32143	none	STRG.26504.2	1	STRG.26504.1	1
scaffold_22	retained_intron	237472	237591	+	asmbl_29120	none	blat.proc3829883.chain_1698	1	STRG.24664.1,blat.proc3829883.chain_1699	2
scaffold_4	alternate_exon	18758304	18758471	-	asmbl_42138	none	STRG.5464.3	1	STRG.5464.2	1
scaffold_16	retained_exon	9032991	9033040	+	asmbl_17252	none	STRG.19501.3,blat.proc3829881.chain_391	2	STRG.19501.2,blat.proc3829881.chain_388,blat.proc3829881.chain_389	3
scaffold_20	starts_in_intron	12112022	12112022	+	asmbl_26267	none	Trinity_GG_13119_c0_g1_i3,blat.proc3829883.chain_835	2	STRG.23696.1,Trinity_GG_13119_c0_g1_i1,blat.proc3829883.chain_832,blat.proc3829883.chain_833,blat.proc3829883.chain_834	5
scaffold_15	alt_donor	12602193	12602194	+	asmbl_14524	none	STRG.18704.1,blat.proc3829879.chain_3323	2	STRG.18704.2,blat.proc3829879.chain_3324	2
scaffold_14	starts_in_intron	5534018	5534018	+	asmbl_11998	none	Trinity_GG_9355_c0_g1_i2,blat.proc3829879.chain_1731	2	STRG.17015.1,Trinity_GG_9355_c0_g1_i1,blat.proc3829879.chain_1730	3
scaffold_6	ends_in_intron	13004825	13004825	-	asmbl_48798	none	STRG.8061.10	1	STRG.8061.1,STRG.8061.2,STRG.8061.3,STRG.8061.4,STRG.8061.5,STRG.8061.6,STRG.8061.7,STRG.8061.8,Trinity_GG_21547_c0_g1_i11,Trinity_GG_21547_c0_g1_i15,Trinity_GG_21547_c0_g1_i2,Trinity_GG_21547_c0_g1_i7,blat.proc3829891.chain_260,blat.proc3829891.chain_262,blat.proc3829891.chain_264,blat.proc3829891.chain_267,blat.proc3829891.chain_269,blat.proc3829891.chain_270,blat.proc3829891.chain_271,blat.proc3829891.chain_273,blat.proc3829891.chain_274,blat.proc3829891.chain_275	22
scaffold_16	ends_in_intron	213626	213626	+	asmbl_16795,asmbl_16796	none	STRG.19006.1,blat.proc3829879.chain_3623,blat.proc3829879.chain_3624	3	STRG.19006.2,blat.proc3829879.chain_3621	2
scaffold_25	alternate_exon	4869770	4870037	-	asmbl_34212	none	STRG.27399.2,Trinity_GG_32366_c0_g1_i2,blat.proc3829901.chain_702	3	STRG.27399.1,Trinity_GG_32366_c0_g1_i1,blat.proc3829901.chain_701	3
scaffold_27	spliced_intron	2998993	2999967	+	asmbl_36110,asmbl_36111,asmbl_36113,asmbl_36115,asmbl_36118,asmbl_36119,asmbl_36121,asmbl_36122	none	STRG.28767.1,STRG.28767.2,STRG.28767.3,STRG.28767.4,STRG.28767.5,blat.proc3829885.chain_1839,blat.proc3829885.chain_1841,blat.proc3829885.chain_1842,blat.proc3829885.chain_1843,blat.proc3829885.chain_1847,blat.proc3829885.chain_1849	11	blat.proc3829885.chain_1844,blat.proc3829885.chain_1848	2
scaffold_4	ends_in_intron	1973741	1973741	+	asmbl_42472,asmbl_42473,asmbl_42474	none	STRG.4210.2,blat.proc3829873.chain_575	2	blat.proc3829873.chain_574	1
scaffold_18	retained_intron	2050891	2050940	-	asmbl_19729	none	Trinity_GG_28833_c0_g1_i2,blat.proc3829897.chain_1992	2	STRG.21084.2	1
scaffold_17	retained_intron	7850236	7850403	+	asmbl_18052,asmbl_18053	none	Trinity_GG_11175_c1_g1_i1,blat.proc3829881.chain_1177	2	STRG.20399.1,STRG.20399.2,STRG.20399.3	3
scaffold_22	starts_in_intron	4325944	4325944	-	asmbl_30011	none	blat.proc3829899.chain_2000	1	STRG.24836.1,STRG.24836.2,blat.proc3829899.chain_1997,blat.proc3829899.chain_1998	4
scaffold_2	spliced_intron	898896	899000	+	asmbl_24165,asmbl_24166,asmbl_24167,asmbl_24168	none	STRG.1568.1,STRG.1568.2,Trinity_GG_900_c0_g1_i4,blat.proc3829871.chain_1642,blat.proc3829871.chain_1643,blat.proc3829871.chain_1644	6	Trinity_GG_900_c0_g1_i3,Trinity_GG_900_c0_g1_i5,Trinity_GG_900_c0_g1_i6,blat.proc3829871.chain_1640	4
scaffold_9	retained_exon	644077	644460	+	asmbl_53762	none	STRG.10785.4	1	STRG.10785.1,blat.proc3829875.chain_3238	2
scaffold_8	alt_donor	11782858	11782859	-	asmbl_53165,asmbl_53167	none	STRG.10373.1,blat.proc3829891.chain_2496,blat.proc3829891.chain_2497	3	STRG.10373.2	1
scaffold_11	ends_in_intron	12071205	12071205	-	asmbl_7053	none	Trinity_GG_24914_c1_g1_i5,blat.proc3829893.chain_2544	2	STRG.14117.2,blat.proc3829893.chain_2541,blat.proc3829893.chain_2542	3
scaffold_7	alt_donor	8860412	8860413	+	asmbl_50951	none	STRG.9119.1,blat.proc3829875.chain_1574	2	STRG.9119.2	1
scaffold_6	alt_acceptor	12520208	12520209	-	asmbl_48751	none	STRG.8002.3	1	STRG.8002.1,STRG.8002.2,STRG.8002.4,blat.proc3829891.chain_300,blat.proc3829891.chain_301,blat.proc3829891.chain_302	6
scaffold_22	alt_donor	9124222	9124223	-	asmbl_30278	none	STRG.25227.2	1	STRG.25227.1	1
scaffold_16	alt_donor	10155724	10155725	-	asmbl_16487	none	STRG.19588.2	1	STRG.19588.1,blat.proc3829897.chain_534	2
scaffold_23	retained_intron	9951383	9951465	-	asmbl_31832	none	Trinity_GG_31630_c0_g1_i1,blat.proc3829899.chain_3242,blat.proc3829899.chain_3243	3	STRG.26184.1,STRG.26184.2,STRG.26184.3,blat.proc3829899.chain_3241	4
scaffold_2	alt_acceptor	4501864	4501865	-	asmbl_23106	none	STRG.1878.2	1	STRG.1878.1,blat.proc3829887.chain_1691	2
scaffold_7	alternate_exon	12451550	12455530	-	asmbl_50037,asmbl_50038,asmbl_50039,asmbl_50040,asmbl_50041,asmbl_50045	none	Trinity_GG_22282_c0_g1_i1,Trinity_GG_22282_c1_g1_i7,Trinity_GG_22282_c1_g1_i9,blat.proc3829891.chain_1601,blat.proc3829891.chain_1604,blat.proc3829891.chain_1605,blat.proc3829891.chain_1606,blat.proc3829891.chain_1607,blat.proc3829891.chain_1611,blat.proc3829891.chain_1614	10	STRG.9342.3,Trinity_GG_22282_c1_g1_i12,blat.proc3829891.chain_1610	3
scaffold_10	spliced_intron	7672393	7673371	+	asmbl_4575	none	STRG.12547.3	1	STRG.12547.2,Trinity_GG_6909_c0_g1_i1,blat.proc3829877.chain_1107	3
scaffold_25	alternate_exon	7320859	7322163	-	asmbl_34369	none	STRG.27566.4	1	blat.proc3829885.chain_601	1
scaffold_6	alt_acceptor	7267942	7267943	-	asmbl_48424	none	blat.proc3829889.chain_3652	1	STRG.7624.1,blat.proc3829889.chain_3651	2
scaffold_4	alt_acceptor	12694264	12694265	+	asmbl_43069	none	STRG.4907.2,Trinity_GG_2728_c0_g1_i1,blat.proc3829873.chain_1232	3	STRG.4907.1,Trinity_GG_2728_c0_g1_i2,blat.proc3829873.chain_1231	3
scaffold_14	starts_in_intron	7290624	7290624	-	asmbl_13170	none	Trinity_GG_26608_c0_g1_i1	1	STRG.17151.1,blat.proc3829895.chain_1803	2
scaffold_1	alt_acceptor	19006517	19006518	+	asmbl_2559	none	STRG.1322.1	1	STRG.1322.3	1
scaffold_25	alternate_exon	6298086	6298555	-	asmbl_34318	none	blat.proc3829901.chain_820	1	STRG.27515.1,Trinity_GG_32428_c0_g1_i4,blat.proc3829901.chain_819,blat.proc3829901.chain_822	4
scaffold_4	alt_donor	4425804	4425805	-	asmbl_41251	none	STRG.4342.3	1	STRG.4342.1,STRG.4342.2,blat.proc3829889.chain_471,blat.proc3829889.chain_473	4
scaffold_20	spliced_intron	2765358	2765473	-	asmbl_26596	none	STRG.23004.5	1	Trinity_GG_29850_c1_g1_i1,blat.proc3829899.chain_29	2
scaffold_6	retained_intron	7185667	7185920	-	asmbl_48418	none	blat.proc3829889.chain_3622	1	STRG.7616.1,STRG.7616.2,blat.proc3829889.chain_3621,blat.proc3829889.chain_3623	4
scaffold_6	skipped_exon	18047904	18050496	-	asmbl_49161	none	STRG.8479.1,blat.proc3829891.chain_773	2	STRG.8479.2,blat.proc3829891.chain_774	2
scaffold_3	alt_acceptor	7583152	7583153	+	asmbl_40123	none	STRG.3342.1,blat.proc3829871.chain_3538	2	STRG.3342.2,blat.proc3829871.chain_3539	2
scaffold_23	alternate_exon	248647	250271	-	asmbl_31289,asmbl_31290	none	STRG.25528.1,STRG.25528.3,blat.proc3829899.chain_2628,blat.proc3829899.chain_2629	4	STRG.25528.2,blat.proc3829899.chain_2631	2
scaffold_4	spliced_intron	14647836	14648056	-	asmbl_41808,asmbl_41814	none	STRG.5094.1,blat.proc3829889.chain_1121,blat.proc3829889.chain_1123	3	STRG.5094.2,STRG.5094.3,blat.proc3829889.chain_1117,blat.proc3829889.chain_1118,blat.proc3829889.chain_1119,blat.proc3829889.chain_1122	6
scaffold_14	ends_in_intron	12630232	12630232	-	asmbl_13574	none	STRG.17566.4	1	STRG.17566.1,STRG.17566.3,blat.proc3829895.chain_2326,blat.proc3829895.chain_2327,blat.proc3829895.chain_2329,blat.proc3829895.chain_2330,blat.proc3829895.chain_2331,blat.proc3829895.chain_2332,blat.proc3829895.chain_2333	9
scaffold_1	starts_in_intron	14356383	14356383	+	asmbl_2368	none	blat.proc3829871.chain_1122	1	STRG.1032.1,blat.proc3829871.chain_1124	2
scaffold_7	alt_donor	3957275	3957276	-	asmbl_49653,asmbl_49655	none	STRG.8779.3,blat.proc3829891.chain_1077	2	STRG.8779.1,STRG.8779.2,blat.proc3829891.chain_1076	3
scaffold_21	alt_acceptor	256225	256226	-	asmbl_27316	none	STRG.23718.8,blat.proc3829899.chain_781	2	blat.proc3829899.chain_791,blat.proc3829899.chain_794	2
scaffold_1555	skipped_exon	479	1785	-	asmbl_15980	none	STRG.30598.2	1	STRG.30598.1	1
scaffold_13	retained_intron	2571028	2571173	+	asmbl_10607,asmbl_10611	none	Trinity_GG_8519_c0_g1_i8,blat.proc3829879.chain_188,blat.proc3829879.chain_194	3	STRG.15550.1,Trinity_GG_8519_c0_g1_i1,Trinity_GG_8519_c0_g1_i3,blat.proc3829879.chain_189,blat.proc3829879.chain_190,blat.proc3829879.chain_191,blat.proc3829879.chain_192,blat.proc3829879.chain_193,blat.proc3829879.chain_195	9
scaffold_16	starts_in_intron	11398521	11398521	-	asmbl_16518	none	STRG.19663.3	1	STRG.19663.4,STRG.19663.5,blat.proc3829897.chain_606	3
scaffold_7	starts_in_intron	1519105	1519105	+	asmbl_50494	none	Trinity_GG_4708_c0_g1_i1,blat.proc3829875.chain_980	2	STRG.8636.1,STRG.8636.2,Trinity_GG_4708_c0_g1_i2,blat.proc3829875.chain_981,blat.proc3829875.chain_982	5
scaffold_11	retained_intron	6534474	6535499	-	asmbl_6695	none	STRG.13688.2,blat.proc3829893.chain_2140	2	STRG.13688.1,blat.proc3829893.chain_2141	2
scaffold_17	alt_acceptor	5726616	5726617	-	asmbl_18996	none	STRG.20261.3	1	STRG.20261.1,blat.proc3829897.chain_1218	2
scaffold_14	alt_acceptor	13589141	13589142	+	asmbl_12468	none	STRG.17628.2	1	STRG.17628.1,blat.proc3829879.chain_2270	2
scaffold_23	skipped_exon	7631700	7633531	-	asmbl_31758	none	STRG.26056.2,blat.proc3829899.chain_3164	2	STRG.26056.1,blat.proc3829899.chain_3165	2
scaffold_4	retained_exon	15355980	15356012	+	asmbl_43281	none	STRG.5127.3	1	STRG.5127.2,blat.proc3829873.chain_1471	2
scaffold_16	retained_intron	6149425	6149506	+	asmbl_17071,asmbl_17072	none	Trinity_GG_10589_c0_g1_i7,blat.proc3829881.chain_208,blat.proc3829881.chain_213	3	STRG.19342.1,blat.proc3829881.chain_214	2
scaffold_21	retained_intron	7327012	7327159	-	asmbl_27821	none	blat.proc3829899.chain_1325	1	STRG.24243.1,blat.proc3829899.chain_1322	2
scaffold_19	spliced_intron	1106060	1106189	-	asmbl_21228,asmbl_21229,asmbl_21231	none	STRG.21887.1,STRG.21887.2,STRG.21887.4,Trinity_GG_29212_c0_g1_i3,blat.proc3829897.chain_2643	5	STRG.21887.3,Trinity_GG_29212_c0_g1_i4,blat.proc3829897.chain_2644	3
scaffold_18	alt_donor	2835248	2835249	+	asmbl_20455	none	blat.proc3829881.chain_1917	1	STRG.21133.4,STRG.21133.5,blat.proc3829881.chain_1914	3
scaffold_11	starts_in_intron	12901124	12901124	-	asmbl_7084	none	blat.proc3829893.chain_2637	1	STRG.14165.1,STRG.14165.2,blat.proc3829893.chain_2635,blat.proc3829893.chain_2636	4
scaffold_1	starts_in_intron	1050627	1050627	+	asmbl_1451	none	Trinity_GG_2_c0_g1_i1,blat.proc3829871.chain_2	2	STRG.59.1	1
scaffold_10	retained_intron	12840971	12841059	-	asmbl_3735	none	blat.proc3829893.chain_1375	1	STRG.12865.1,blat.proc3829893.chain_1376	2
scaffold_2	retained_intron	6763081	6764405	+	asmbl_24520,asmbl_24521,asmbl_24524,asmbl_24525	none	Trinity_GG_1102_c0_g1_i11,Trinity_GG_1102_c0_g1_i2,Trinity_GG_1102_c0_g1_i4,Trinity_GG_1102_c0_g1_i6,blat.proc3829871.chain_2007,blat.proc3829871.chain_2010,blat.proc3829871.chain_2011,blat.proc3829871.chain_2013	8	STRG.2035.1,Trinity_GG_1102_c0_g1_i1,Trinity_GG_1102_c0_g1_i10,Trinity_GG_1102_c0_g1_i5,Trinity_GG_1102_c0_g1_i7,blat.proc3829871.chain_2005,blat.proc3829871.chain_2006,blat.proc3829871.chain_2008,blat.proc3829871.chain_2012	9
scaffold_19	alt_donor	7884752	7884753	-	asmbl_21473	none	STRG.22241.1,blat.proc3829897.chain_2936	2	STRG.22241.2	1
scaffold_19	retained_intron	10820688	10821270	+	asmbl_22466,asmbl_22467	none	STRG.22410.2,blat.proc3829881.chain_3324	2	STRG.22410.1,Trinity_GG_12375_c0_g1_i3,blat.proc3829881.chain_3323	3
scaffold_1	alt_acceptor	3645962	3645963	+	asmbl_1619	none	STRG.228.1,blat.proc3829871.chain_239	2	STRG.228.2,blat.proc3829871.chain_238	2
scaffold_8	retained_intron	6028190	6028278	+	asmbl_51909,asmbl_51915	none	Trinity_GG_5590_c1_g1_i6,blat.proc3829875.chain_2551,blat.proc3829875.chain_2554	3	blat.proc3829875.chain_2552,blat.proc3829875.chain_2553,blat.proc3829875.chain_2555	3
scaffold_21	spliced_intron	2475393	2475501	-	asmbl_27481,asmbl_27484,asmbl_27485	none	STRG.23863.1,STRG.23863.4,blat.proc3829899.chain_899,blat.proc3829899.chain_902,blat.proc3829899.chain_904,blat.proc3829899.chain_906	6	STRG.23863.2,blat.proc3829899.chain_898,blat.proc3829899.chain_901	3
scaffold_5	alternate_exon	15704051	15704198	+	asmbl_44674	none	STRG.6756.3	1	STRG.6756.2	1
scaffold_10	alt_donor	11602230	11602231	+	asmbl_4752	none	blat.proc3829877.chain_1385	1	blat.proc3829877.chain_1378	1
scaffold_7	retained_intron	12614534	12614733	+	asmbl_51157,asmbl_51159	none	STRG.9361.2,Trinity_GG_5165_c0_g1_i1,Trinity_GG_5165_c0_g1_i3,blat.proc3829875.chain_1764,blat.proc3829875.chain_1765	5	STRG.9361.1,Trinity_GG_5165_c0_g1_i2,blat.proc3829875.chain_1766	3
scaffold_3	alt_acceptor	14016922	14016923	+	asmbl_40453	none	STRG.3748.1,Trinity_GG_2102_c0_g1_i2,blat.proc3829873.chain_153	3	STRG.3748.2,Trinity_GG_2102_c0_g1_i1,blat.proc3829873.chain_154	3
scaffold_9	alternate_exon	4203548	4203934	+	asmbl_53923,asmbl_53924	none	STRG.11013.2,STRG.11013.3	2	STRG.11013.4,blat.proc3829875.chain_3427,blat.proc3829875.chain_3429	3
scaffold_21	ends_in_intron	1657736	1657736	+	asmbl_28369,asmbl_28373	none	blat.proc3829883.chain_990,blat.proc3829883.chain_991	2	STRG.23807.1,Trinity_GG_13211_c0_g1_i2,Trinity_GG_13211_c0_g1_i3,Trinity_GG_13211_c0_g1_i4,Trinity_GG_13211_c0_g1_i7,blat.proc3829883.chain_988,blat.proc3829883.chain_989,blat.proc3829883.chain_992,blat.proc3829883.chain_993	9
scaffold_2	alternate_exon	16357518	16357813	+	asmbl_25153	none	Trinity_GG_1455_c0_g1_i3,blat.proc3829871.chain_2758	2	STRG.2573.2,STRG.2573.3,blat.proc3829871.chain_2760	3
scaffold_8	alt_donor	13162188	13162189	-	asmbl_53284	none	STRG.10482.1,blat.proc3829891.chain_2618	2	STRG.10482.2,blat.proc3829891.chain_2617	2
scaffold_9	starts_in_intron	1236394	1236394	+	asmbl_53787	none	blat.proc3829875.chain_3241	1	STRG.10822.1,blat.proc3829875.chain_3240	2
scaffold_5	starts_in_intron	47675	47675	-	asmbl_45139	none	blat.proc3829889.chain_1673	1	STRG.5563.1,blat.proc3829889.chain_1672	2
scaffold_21	retained_intron	1053775	1054170	-	asmbl_27401,asmbl_27404,asmbl_27407,asmbl_27408	none	STRG.23776.3,STRG.23776.4,Trinity_GG_30261_c0_g1_i7,Trinity_GG_30261_c0_g1_i9,blat.proc3829899.chain_851,blat.proc3829899.chain_854	6	STRG.23776.2,Trinity_GG_30261_c0_g1_i4,blat.proc3829899.chain_852	3
scaffold_24	alt_acceptor	9952399	9952400	-	asmbl_33148,asmbl_33151,asmbl_33152	none	STRG.26947.4,STRG.26947.8,blat.proc3829901.chain_250	3	STRG.26947.1,STRG.26947.3,Trinity_GG_32087_c0_g1_i5,blat.proc3829901.chain_248,blat.proc3829901.chain_249	5
scaffold_2	starts_in_intron	7815495	7815495	-	asmbl_23302	none	Trinity_GG_18175_c0_g1_i2,blat.proc3829887.chain_1988	2	STRG.2080.1,Trinity_GG_18175_c0_g1_i1,Trinity_GG_18175_c0_g1_i3,blat.proc3829887.chain_1986,blat.proc3829887.chain_1987	5
scaffold_8	retained_intron	16279130	16279219	+	asmbl_52436	none	Trinity_GG_5904_c0_g1_i1,blat.proc3829875.chain_3117	2	Trinity_GG_5904_c0_g1_i2,blat.proc3829875.chain_3118	2
scaffold_2	alt_acceptor	4501841	4501842	-	asmbl_23105	none	STRG.1878.1,blat.proc3829887.chain_1691	2	STRG.1878.2	1
scaffold_14	starts_in_intron	11384686	11384686	+	asmbl_12354	none	blat.proc3829879.chain_2170	1	STRG.17456.1,blat.proc3829879.chain_2169	2
scaffold_14	starts_in_intron	9191750	9191750	+	asmbl_12254	none	Trinity_GG_9529_c0_g1_i1,blat.proc3829879.chain_2039	2	STRG.17305.1,blat.proc3829879.chain_2038,blat.proc3829879.chain_2040,blat.proc3829879.chain_2041	4
scaffold_15	retained_exon	15857506	15857571	+	asmbl_14774,asmbl_14775	none	STRG.18964.1,STRG.18964.4	2	STRG.18964.2,Trinity_GG_10383_c0_g1_i8,blat.proc3829879.chain_3544	3
scaffold_10	starts_in_intron	1164082	1164082	+	asmbl_4195	none	Trinity_GG_6676_c0_g1_i2,blat.proc3829877.chain_707	2	STRG.11995.2,blat.proc3829877.chain_704	2
scaffold_16	skipped_exon	10972053	10973639	-	asmbl_16499,asmbl_16500,asmbl_16502	none	STRG.19633.1,STRG.19633.2,blat.proc3829897.chain_538,blat.proc3829897.chain_540	4	blat.proc3829897.chain_541	1
scaffold_14	alt_donor	4199139	4199140	-	asmbl_13019	none	STRG.16962.2	1	STRG.16962.1,blat.proc3829895.chain_1630,blat.proc3829895.chain_1631	3
scaffold_19	retained_exon	5373273	5373362	+	asmbl_22171	none	STRG.22088.1,blat.proc3829881.chain_3031	2	STRG.22088.2	1
scaffold_7	spliced_intron	12614534	12614733	+	asmbl_51158	none	STRG.9361.1,Trinity_GG_5165_c0_g1_i2,blat.proc3829875.chain_1766	3	STRG.9361.2,Trinity_GG_5165_c0_g1_i1,Trinity_GG_5165_c0_g1_i3,blat.proc3829875.chain_1764,blat.proc3829875.chain_1765	5
scaffold_4	alternate_exon	10915446	10915641	+	asmbl_43015	none	STRG.4812.1,blat.proc3829873.chain_1184	2	STRG.4812.2,blat.proc3829873.chain_1183	2
scaffold_27	starts_in_intron	4807510	4807510	+	asmbl_36278	none	Trinity_GG_16011_c0_g1_i1,blat.proc3829885.chain_2036	2	STRG.28907.1,STRG.28907.2,blat.proc3829885.chain_2034,blat.proc3829885.chain_2035	4
scaffold_13	spliced_intron	3811189	3811295	-	asmbl_9545,asmbl_9549	none	STRG.15699.1,blat.proc3829895.chain_409,blat.proc3829895.chain_412	3	blat.proc3829895.chain_410	1
scaffold_2	starts_in_intron	1317798	1317798	+	asmbl_24204	none	blat.proc3829871.chain_1713	1	STRG.1604.1,STRG.1604.2,blat.proc3829871.chain_1714	3
scaffold_5	starts_in_intron	8680946	8680946	-	asmbl_45608,asmbl_45609	none	STRG.6199.2,blat.proc3829889.chain_2267	2	STRG.6199.1,blat.proc3829889.chain_2266,blat.proc3829889.chain_2268	3
scaffold_10	retained_intron	3794012	3794169	-	asmbl_3144	none	Trinity_GG_23826_c0_g1_i1,blat.proc3829893.chain_664	2	blat.proc3829893.chain_667	1
scaffold_44	alt_donor	21041	21042	-	asmbl_43685	none	STRG.30026.1,blat.proc3829901.chain_3132	2	STRG.30026.2	1
scaffold_21	retained_intron	2947813	2947912	-	asmbl_27519	none	STRG.23903.2,Trinity_GG_30331_c0_g1_i1,blat.proc3829899.chain_970	3	STRG.23903.3	1
scaffold_137	retained_intron	8309	8646	-	asmbl_11705	none	STRG.30156.1,Trinity_GG_33929_c0_g1_i1,blat.proc3829901.chain_3246	3	STRG.30156.2	1
scaffold_17	alternate_exon	2354832	2355134	+	asmbl_17772	none	STRG.20017.3	1	STRG.20017.5,STRG.20017.7	2
scaffold_5	retained_intron	15539705	15539796	-	asmbl_46076	none	STRG.6735.2	1	STRG.6735.1	1
scaffold_1	alternate_exon	9174122	9174142	-	asmbl_528	none	STRG.606.1	1	STRG.606.2	1
scaffold_20	retained_exon	652096	652296	-	asmbl_26441	none	STRG.22754.2	1	STRG.22754.1,blat.proc3829897.chain_3535	2
scaffold_28	starts_in_intron	2427340	2427340	-	asmbl_37379	none	Trinity_GG_33457_c0_g1_i1,blat.proc3829901.chain_2465	2	STRG.29397.1,Trinity_GG_33457_c0_g1_i2,blat.proc3829901.chain_2463	3
scaffold_20	spliced_intron	11672198	11672271	-	asmbl_27098,asmbl_27103	none	STRG.23656.3,blat.proc3829899.chain_650,blat.proc3829899.chain_651	3	STRG.23656.2,blat.proc3829899.chain_654	2
scaffold_21	spliced_intron	5153424	5153601	-	asmbl_27644	none	STRG.24035.2	1	STRG.24035.1,blat.proc3829899.chain_1109	2
scaffold_7	retained_exon	18784052	18784164	+	asmbl_51421,asmbl_51423,asmbl_51426	none	STRG.9691.1,STRG.9691.3,blat.proc3829875.chain_2056	3	STRG.9691.5	1
scaffold_2	starts_in_intron	4687406	4687406	-	asmbl_23113	none	blat.proc3829887.chain_1721	1	STRG.1889.1,STRG.1889.3	2
scaffold_23	alternate_exon	4229664	4232310	-	asmbl_31568,asmbl_31573	none	STRG.25818.3,blat.proc3829899.chain_2943,blat.proc3829899.chain_2944	3	STRG.25818.1,STRG.25818.5,blat.proc3829899.chain_2945,blat.proc3829899.chain_2949	4
scaffold_24	starts_in_intron	9121548	9121548	+	asmbl_32520	none	blat.proc3829885.chain_22	1	STRG.26917.2	1
scaffold_2	ends_in_intron	13897049	13897049	-	asmbl_23545	none	Trinity_GG_18354_c0_g1_i1,blat.proc3829887.chain_2285	2	STRG.2382.2,blat.proc3829887.chain_2290	2
scaffold_3	starts_in_intron	5927963	5927963	-	asmbl_38830	none	blat.proc3829887.chain_2994	1	STRG.3248.1,blat.proc3829887.chain_2991,blat.proc3829887.chain_2992,blat.proc3829887.chain_2993	4
scaffold_27	ends_in_intron	6983031	6983031	-	asmbl_37040	none	Trinity_GG_33284_c1_g1_i1,blat.proc3829901.chain_2199	2	STRG.29045.1	1
scaffold_18	retained_intron	6294324	6294450	+	asmbl_20699	none	STRG.21353.1,Trinity_GG_11746_c0_g1_i1,blat.proc3829881.chain_2239	3	STRG.21353.2,blat.proc3829881.chain_2240	2
scaffold_10	retained_intron	7684017	7685179	+	asmbl_4578	none	STRG.12548.4,blat.proc3829877.chain_1171	2	blat.proc3829877.chain_1168	1
scaffold_6	ends_in_intron	13169830	13169830	-	asmbl_48826	none	Trinity_GG_21606_c0_g1_i3,blat.proc3829891.chain_385	2	STRG.8067.1,blat.proc3829891.chain_382,blat.proc3829891.chain_383	3
scaffold_2	alt_acceptor	20324189	20324190	-	asmbl_23912	none	STRG.2878.1,blat.proc3829887.chain_2686	2	STRG.2878.2	1
scaffold_11	retained_exon	6591304	6591394	-	asmbl_6699,asmbl_6700	none	STRG.13693.1,blat.proc3829893.chain_2138,blat.proc3829893.chain_2139	3	STRG.13693.2	1
scaffold_20	alternate_exon	6984083	6984192	-	asmbl_26781	none	STRG.23247.1	1	STRG.23247.3	1
scaffold_5	spliced_intron	9085892	9085964	+	asmbl_44259,asmbl_44262,asmbl_44264,asmbl_44265,asmbl_44266,asmbl_44267,asmbl_44268,asmbl_44269,asmbl_44270,asmbl_44271	none	STRG.6237.1,STRG.6237.2,STRG.6237.3,STRG.6237.4,STRG.6237.5,blat.proc3829873.chain_2418,blat.proc3829873.chain_2419,blat.proc3829873.chain_2422,blat.proc3829873.chain_2423,blat.proc3829873.chain_2424,blat.proc3829873.chain_2426	11	blat.proc3829873.chain_2421	1
scaffold_8	spliced_intron	18084680	18084897	-	asmbl_53511,asmbl_53513,asmbl_53514,asmbl_53516	none	STRG.10701.1,STRG.10701.3,Trinity_GG_22907_c0_g1_i1,Trinity_GG_22907_c0_g1_i2,Trinity_GG_22907_c0_g1_i6,blat.proc3829891.chain_2754,blat.proc3829891.chain_2755,blat.proc3829891.chain_2756	8	STRG.10701.2,Trinity_GG_22907_c0_g1_i4,blat.proc3829891.chain_2753	3
scaffold_1	spliced_intron	9163722	9163832	-	asmbl_521,asmbl_523,asmbl_524	none	STRG.610.1,blat.proc3829887.chain_526,blat.proc3829887.chain_528	3	blat.proc3829887.chain_524	1
scaffold_2	alt_acceptor	14198789	14198790	-	asmbl_23589,asmbl_23590	none	STRG.2411.4,blat.proc3829887.chain_2298	2	STRG.2411.1,STRG.2411.3,blat.proc3829887.chain_2297	3
scaffold_13	alt_donor	2507240	2507241	+	asmbl_10603	none	STRG.15546.2,Trinity_GG_8559_c0_g1_i1,blat.proc3829879.chain_271	3	STRG.15546.1,Trinity_GG_8559_c0_g1_i5,blat.proc3829879.chain_268	3
scaffold_6	ends_in_intron	18659947	18659947	+	asmbl_47779	none	blat.proc3829875.chain_947	1	STRG.8534.1,blat.proc3829875.chain_946,blat.proc3829875.chain_948,blat.proc3829875.chain_949,blat.proc3829875.chain_950	5
scaffold_28	alt_donor	819643	819644	-	asmbl_37265	none	STRG.29275.2	1	STRG.29275.1,blat.proc3829901.chain_2313	2
scaffold_10	starts_in_intron	17117663	17117663	+	asmbl_5017	none	Trinity_GG_7239_c1_g1_i1,blat.proc3829877.chain_1677	2	STRG.13148.1,STRG.13148.2,blat.proc3829877.chain_1676	3
scaffold_5	starts_in_intron	9735343	9735343	-	asmbl_45684	none	blat.proc3829889.chain_2368	1	STRG.6277.1,blat.proc3829889.chain_2367	2
scaffold_7	alt_donor	1440603	1440604	-	asmbl_49540	none	STRG.8631.2	1	blat.proc3829891.chain_1002	1
scaffold_4	starts_in_intron	8411859	8411859	+	asmbl_42895	none	blat.proc3829873.chain_1020	1	STRG.4670.1,STRG.4670.2,Trinity_GG_2582_c0_g1_i1,blat.proc3829873.chain_1018	4
scaffold_5	alt_donor	4687051	4687052	-	asmbl_45373	none	STRG.5919.6,blat.proc3829889.chain_2028	2	STRG.5919.1,STRG.5919.4,blat.proc3829889.chain_2026,blat.proc3829889.chain_2027,blat.proc3829889.chain_2029,blat.proc3829889.chain_2030,blat.proc3829889.chain_2032,blat.proc3829889.chain_2033,blat.proc3829889.chain_2035	9
scaffold_5	alternate_exon	18830970	18831075	+	asmbl_44948	none	STRG.7003.3	1	STRG.7003.1,STRG.7003.2,Trinity_GG_3852_c0_g1_i1,Trinity_GG_3852_c0_g1_i2,blat.proc3829873.chain_3155,blat.proc3829873.chain_3156	6
scaffold_6	alternate_exon	13918426	13918810	-	asmbl_48892	none	STRG.8132.5,Trinity_GG_21636_c1_g1_i2,blat.proc3829891.chain_441	3	STRG.8132.1,STRG.8132.2,STRG.8132.3,blat.proc3829891.chain_438,blat.proc3829891.chain_439,blat.proc3829891.chain_440	6
scaffold_24	ends_in_intron	9082497	9082497	+	asmbl_32496	none	Trinity_GG_14897_c0_g2_i1,blat.proc3829885.chain_79	2	STRG.26929.2,Trinity_GG_14897_c0_g1_i2,blat.proc3829885.chain_72,blat.proc3829885.chain_74	4
scaffold_10	spliced_intron	8329038	8329329	-	asmbl_3496	none	STRG.12584.3	1	STRG.12584.2	1
scaffold_9	alt_donor	12631060	12631061	+	asmbl_54431	none	STRG.11574.3	1	STRG.11574.4	1
scaffold_18	alt_acceptor	3634975	3634976	+	asmbl_20492,asmbl_20493,asmbl_20494	none	STRG.21169.1,STRG.21169.2,blat.proc3829881.chain_2050,blat.proc3829881.chain_2051,blat.proc3829881.chain_2052	5	STRG.21169.3	1
scaffold_16	spliced_intron	4095144	4095461	+	asmbl_16959,asmbl_16964,asmbl_16966,asmbl_16967	none	STRG.19214.1,STRG.19214.2,STRG.19214.3,blat.proc3829881.chain_82	4	blat.proc3829881.chain_77	1
scaffold_22	retained_exon	215206	215343	+	asmbl_29112,asmbl_29115,asmbl_29117	none	STRG.24661.2,STRG.24661.3,STRG.24661.5,blat.proc3829883.chain_1716,blat.proc3829883.chain_1717	5	STRG.24661.6	1
scaffold_11	ends_in_intron	6240699	6240699	+	asmbl_5580	none	Trinity_GG_7531_c0_g1_i1,blat.proc3829877.chain_2157	2	STRG.13666.1,blat.proc3829877.chain_2158	2
scaffold_2	alt_donor	19194863	19194864	-	asmbl_23869	none	STRG.2791.3	1	STRG.2791.2,blat.proc3829871.chain_2955	2
scaffold_16	spliced_intron	290653	291015	+	asmbl_16802,asmbl_16804,asmbl_16805,asmbl_16806,asmbl_16807	none	STRG.19012.1,STRG.19012.2,Trinity_GG_10430_c0_g1_i2,blat.proc3829879.chain_3638,blat.proc3829879.chain_3639,blat.proc3829879.chain_3641	6	STRG.19012.3	1
scaffold_21	spliced_intron	7508102	7508305	-	asmbl_27855	none	STRG.24270.1,blat.proc3829899.chain_1282	2	Trinity_GG_30512_c0_g1_i1,blat.proc3829899.chain_1281	2
scaffold_17	alt_acceptor	3998704	3998705	+	asmbl_17882,asmbl_17887	none	STRG.20145.2,blat.proc3829881.chain_989	2	blat.proc3829881.chain_990	1
scaffold_28	starts_in_intron	8067925	8067925	+	asmbl_38416	none	blat.proc3829885.chain_2960	1	STRG.29853.1,STRG.29853.2,blat.proc3829885.chain_2961	3
scaffold_7	retained_exon	4047198	4047231	-	asmbl_49661	none	STRG.8793.3,blat.proc3829891.chain_1137	2	STRG.8793.1	1
scaffold_2	alt_acceptor	6349310	6349311	-	asmbl_23220,asmbl_23221	none	STRG.2000.1,Trinity_GG_18078_c0_g1_i1,Trinity_GG_18078_c0_g1_i4,blat.proc3829887.chain_1763,blat.proc3829887.chain_1764	5	STRG.2000.2	1
scaffold_11	alt_acceptor	2283134	2283135	-	asmbl_6468	none	STRG.13371.2	1	STRG.13371.1,blat.proc3829893.chain_1848	2
scaffold_28	retained_exon	2642632	2642744	+	asmbl_38086	none	STRG.29420.3,Trinity_GG_16327_c0_g1_i3,blat.proc3829885.chain_2550	3	STRG.29420.1,STRG.29420.2,Trinity_GG_16327_c0_g1_i2,blat.proc3829885.chain_2549,blat.proc3829885.chain_2551	5
scaffold_27	starts_in_intron	2048862	2048862	+	asmbl_36025	none	blat.proc3829885.chain_1706	1	STRG.28673.1,blat.proc3829885.chain_1707,blat.proc3829885.chain_1708	3
scaffold_1	retained_intron	12953678	12953756	-	asmbl_790,asmbl_791	none	STRG.920.1,STRG.920.2,blat.proc3829887.chain_814,blat.proc3829887.chain_815	4	STRG.920.3,blat.proc3829887.chain_816	2
scaffold_20	alt_donor	2402117	2402118	+	asmbl_25641,asmbl_25642,asmbl_25643	none	STRG.22962.2,blat.proc3829883.chain_91,blat.proc3829883.chain_92,blat.proc3829883.chain_93	4	STRG.22962.1	1
scaffold_23	starts_in_intron	10204330	10204330	-	asmbl_31849,asmbl_31850	none	Trinity_GG_31625_c0_g1_i1,blat.proc3829899.chain_3228,blat.proc3829899.chain_3230	3	STRG.26215.2	1
scaffold_26	alt_donor	8362519	8362520	+	asmbl_35694	none	STRG.28410.2,Trinity_GG_15730_c0_g1_i1,blat.proc3829885.chain_1462	3	STRG.28410.1	1
scaffold_28	retained_intron	7305588	7306228	-	asmbl_37720,asmbl_37722	none	STRG.29781.1,STRG.29781.2	2	STRG.29781.3	1
scaffold_3	alt_donor	5129759	5129760	-	asmbl_38786	none	STRG.3205.2,blat.proc3829887.chain_2930	2	STRG.3205.3,blat.proc3829887.chain_2932	2
scaffold_5	alternate_exon	15703769	15704198	+	asmbl_44674	none	STRG.6756.3	1	STRG.6756.1,blat.proc3829873.chain_2831,blat.proc3829873.chain_2832	3
scaffold_17	spliced_intron	14627370	14627619	-	asmbl_19485,asmbl_19486,asmbl_19487	none	STRG.20920.2,STRG.20920.3,blat.proc3829897.chain_1812	3	blat.proc3829897.chain_1816	1
scaffold_15	alt_donor	13561742	13561743	-	asmbl_15657	none	STRG.18782.1,blat.proc3829895.chain_3524	2	STRG.18782.2,STRG.18782.3,blat.proc3829895.chain_3525	3
scaffold_13	alt_acceptor	7515360	7515361	-	asmbl_9855	none	STRG.16033.2	1	STRG.16033.1	1
scaffold_12	starts_in_intron	4985621	4985621	+	asmbl_8589	none	Trinity_GG_8053_c1_g1_i1,blat.proc3829877.chain_3089	2	STRG.14656.1,STRG.14656.2,blat.proc3829877.chain_3080,blat.proc3829877.chain_3082,blat.proc3829877.chain_3086	5
scaffold_5	ends_in_intron	4517325	4517325	+	asmbl_43934	none	blat.proc3829873.chain_2019	1	STRG.5896.1,blat.proc3829873.chain_2020	2
scaffold_14	spliced_intron	4116590	4116724	+	asmbl_11946,asmbl_11947,asmbl_11950	none	STRG.16951.1,STRG.16951.2,STRG.16951.4,Trinity_GG_9333_c0_g1_i1,Trinity_GG_9333_c0_g1_i5,Trinity_GG_9333_c0_g1_i7,blat.proc3829879.chain_1689,blat.proc3829879.chain_1690,blat.proc3829879.chain_1691	9	STRG.16951.3,STRG.16951.5,Trinity_GG_9333_c0_g1_i3,Trinity_GG_9333_c0_g1_i4,blat.proc3829879.chain_1686,blat.proc3829879.chain_1688	6
scaffold_7	alternate_exon	4071926	4072238	-	asmbl_49666	none	blat.proc3829891.chain_1110	1	STRG.8797.1	1
scaffold_17	ends_in_intron	1055693	1055693	-	asmbl_18715	none	Trinity_GG_28161_c1_g1_i1,blat.proc3829897.chain_823	2	STRG.19935.1,STRG.19935.2,STRG.19935.3,blat.proc3829897.chain_820,blat.proc3829897.chain_821,blat.proc3829897.chain_822	6
scaffold_8	ends_in_intron	11959059	11959059	+	asmbl_52290	none	blat.proc3829875.chain_2889	1	STRG.10390.1	1
scaffold_8	retained_intron	14569488	14569706	+	asmbl_52376	none	blat.proc3829875.chain_3057	1	STRG.10535.1,blat.proc3829875.chain_3054	2
scaffold_6	alternate_exon	18688854	18688926	+	asmbl_47786	none	STRG.8528.2	1	STRG.8528.1,Trinity_GG_4699_c0_g1_i2,blat.proc3829875.chain_959	3
scaffold_16	alt_donor	3978216	3978217	-	asmbl_16194,asmbl_16195,asmbl_16196	none	STRG.19204.1,STRG.19204.2,blat.proc3829897.chain_233,blat.proc3829897.chain_234	4	STRG.19204.3	1
scaffold_10	retained_intron	5010430	5010561	-	asmbl_3250	none	STRG.12317.1,blat.proc3829893.chain_748	2	blat.proc3829893.chain_749	1
scaffold_23	starts_in_intron	6020318	6020318	-	asmbl_31686	none	blat.proc3829899.chain_3031	1	STRG.25952.1,blat.proc3829899.chain_3029	2
scaffold_17	alt_donor	9956736	9956737	+	asmbl_18262	none	STRG.20598.1,blat.proc3829881.chain_1412	2	STRG.20598.2,blat.proc3829881.chain_1411	2
scaffold_1	retained_intron	5962592	5962698	-	asmbl_311	none	blat.proc3829887.chain_272	1	STRG.395.1,blat.proc3829887.chain_271,blat.proc3829887.chain_273	3
scaffold_5	retained_intron	18758460	18758711	-	asmbl_46251	none	blat.proc3829889.chain_2995	1	blat.proc3829889.chain_2993	1
scaffold_27	retained_exon	6610883	6610940	-	asmbl_37024,asmbl_37025	none	STRG.29008.1,blat.proc3829901.chain_2171	2	STRG.29008.2,blat.proc3829901.chain_2172	2
scaffold_1	ends_in_intron	9298906	9298906	-	asmbl_540	none	Trinity_GG_17319_c0_g1_i3,blat.proc3829887.chain_469	2	Trinity_GG_17319_c0_g1_i2	1
scaffold_22	alt_acceptor	11544061	11544062	+	asmbl_29697	none	STRG.25485.3	1	STRG.25485.1	1
scaffold_11	spliced_intron	2101255	2101441	-	asmbl_6450	none	STRG.13364.3,blat.proc3829893.chain_1826	2	STRG.13364.2,blat.proc3829893.chain_1825	2
scaffold_20	retained_intron	1468562	1468884	-	asmbl_26503	none	STRG.22854.2,Trinity_GG_29782_c1_g1_i4,blat.proc3829897.chain_3662,blat.proc3829897.chain_3665	4	STRG.22854.1,STRG.22854.3,blat.proc3829897.chain_3663,blat.proc3829897.chain_3664	4
scaffold_1	spliced_intron	3681459	3682104	+	asmbl_1626,asmbl_1627	none	STRG.237.3,blat.proc3829871.chain_292	2	STRG.237.1,STRG.237.2,blat.proc3829871.chain_290,blat.proc3829871.chain_293	4
scaffold_3	ends_in_intron	17950360	17950360	-	asmbl_39527	none	STRG.4012.1,Trinity_GG_19207_c0_g1_i1,blat.proc3829889.chain_39	3	blat.proc3829889.chain_41	1
scaffold_16	starts_in_intron	14607809	14607809	-	asmbl_16660	none	blat.proc3829897.chain_802	1	STRG.19837.1,Trinity_GG_28149_c0_g1_i2,Trinity_GG_28149_c0_g1_i3,blat.proc3829897.chain_799,blat.proc3829897.chain_800	5
scaffold_11	alternate_exon	6710835	6711356	-	asmbl_6714	none	STRG.13703.5,Trinity_GG_24701_c1_g1_i1,blat.proc3829893.chain_2183	3	STRG.13703.6,Trinity_GG_24701_c0_g1_i5,blat.proc3829893.chain_2181	3
scaffold_8	retained_intron	16576119	16576384	-	asmbl_53440	none	blat.proc3829891.chain_2781	1	STRG.10623.1,STRG.10623.2,blat.proc3829891.chain_2780,blat.proc3829891.chain_2783	4
scaffold_1	alt_acceptor	3255272	3255273	+	asmbl_1576,asmbl_1577	none	STRG.201.1,Trinity_GG_125_c0_g1_i4,Trinity_GG_125_c0_g1_i5,blat.proc3829871.chain_211,blat.proc3829871.chain_213	5	STRG.201.2,Trinity_GG_125_c0_g1_i1,Trinity_GG_125_c0_g1_i2,blat.proc3829871.chain_209,blat.proc3829871.chain_212	5
scaffold_11	retained_intron	9832457	9832783	+	asmbl_5867,asmbl_5872	none	STRG.13996.3,Trinity_GG_7729_c0_g1_i2,blat.proc3829877.chain_2505,blat.proc3829877.chain_2510	4	STRG.13996.1,STRG.13996.2,STRG.13996.4,blat.proc3829877.chain_2508,blat.proc3829877.chain_2512,blat.proc3829877.chain_2514	6
scaffold_2	retained_intron	13071028	13071351	-	asmbl_23507,asmbl_23509	none	STRG.2340.3,blat.proc3829887.chain_2258	2	STRG.2340.1,STRG.2340.2,blat.proc3829887.chain_2256,blat.proc3829887.chain_2257,blat.proc3829887.chain_2259,blat.proc3829887.chain_2260,blat.proc3829887.chain_2262	7
scaffold_23	retained_intron	6290510	6290714	-	asmbl_31688,asmbl_31689,asmbl_31690,asmbl_31691,asmbl_31694	none	STRG.25954.2,Trinity_GG_31552_c0_g1_i3,Trinity_GG_31552_c0_g1_i4,Trinity_GG_31552_c0_g1_i6,Trinity_GG_31552_c0_g1_i7,blat.proc3829899.chain_3102,blat.proc3829899.chain_3103,blat.proc3829899.chain_3105,blat.proc3829899.chain_3106	9	STRG.25954.1,Trinity_GG_31552_c0_g1_i2,Trinity_GG_31552_c0_g1_i5,blat.proc3829899.chain_3101,blat.proc3829899.chain_3104,blat.proc3829899.chain_3107	6
scaffold_8	alt_donor	9884400	9884401	+	asmbl_52119	none	STRG.10229.2,Trinity_GG_5690_c0_g1_i4,blat.proc3829875.chain_2741	3	STRG.10229.1,Trinity_GG_5690_c0_g1_i3,blat.proc3829875.chain_2742,blat.proc3829875.chain_2743	4
scaffold_11	alternate_exon	3496300	3497052	+	asmbl_5401	none	STRG.13472.3	1	STRG.13472.1	1
scaffold_16	retained_intron	3564452	3564605	-	asmbl_16155,asmbl_16156	none	STRG.19157.1,blat.proc3829897.chain_187,blat.proc3829897.chain_188	3	STRG.19157.2,blat.proc3829897.chain_189	2
scaffold_19	starts_in_intron	12130308	12130308	+	asmbl_22561	none	Trinity_GG_12471_c0_g1_i2	1	STRG.22530.1,Trinity_GG_12471_c0_g1_i1,Trinity_GG_12471_c0_g1_i3,blat.proc3829881.chain_3492	4
scaffold_12	alt_acceptor	14100589	14100590	-	asmbl_8106	none	STRG.15222.1	1	STRG.15222.2,blat.proc3829893.chain_3671	2
scaffold_17	alternate_exon	10048449	10048772	+	asmbl_18286,asmbl_18287	none	STRG.20609.1,STRG.20609.2,blat.proc3829881.chain_1431,blat.proc3829881.chain_1432	4	blat.proc3829881.chain_1429	1
scaffold_5	starts_in_intron	1007005	1007005	-	asmbl_45205	none	Trinity_GG_20226_c1_g1_i4	1	STRG.5649.1	1
scaffold_17	alt_donor	14037372	14037373	-	asmbl_19447,asmbl_19448	none	STRG.20870.1,STRG.20870.2	2	STRG.20870.3	1
scaffold_18	retained_exon	4123158	4123280	+	asmbl_20525,asmbl_20527	none	STRG.21203.1,STRG.21203.2,Trinity_GG_11620_c0_g1_i3,blat.proc3829881.chain_1992	4	STRG.21203.3,Trinity_GG_11620_c0_g1_i1,Trinity_GG_11620_c0_g1_i2,blat.proc3829881.chain_1990,blat.proc3829881.chain_1991	5
scaffold_7	starts_in_intron	12539640	12539640	-	asmbl_50054	none	blat.proc3829891.chain_1568	1	STRG.9352.1,STRG.9352.2,STRG.9352.3,STRG.9352.4,STRG.9352.5,blat.proc3829891.chain_1570,blat.proc3829891.chain_1571,blat.proc3829891.chain_1572	8
scaffold_17	alt_acceptor	10123223	10123224	+	asmbl_18306	none	STRG.20619.2	1	STRG.20619.1,STRG.20619.3	2
scaffold_28	starts_in_intron	1401369	1401369	+	asmbl_37997	none	blat.proc3829885.chain_2377	1	STRG.29315.1	1
scaffold_9	alt_acceptor	11889194	11889195	+	asmbl_54377,asmbl_54378	none	STRG.11505.1,STRG.11505.2	2	blat.proc3829877.chain_291	1
scaffold_1	ends_in_intron	5706701	5706701	+	asmbl_1748	none	blat.proc3829871.chain_430	1	STRG.369.1,blat.proc3829871.chain_429,blat.proc3829871.chain_431,blat.proc3829871.chain_432,blat.proc3829871.chain_433	5
scaffold_8	alt_acceptor	1207473	1207474	-	asmbl_52691	none	STRG.9740.1	1	STRG.9740.3	1
scaffold_18	spliced_intron	4690186	4690277	+	asmbl_20572,asmbl_20574	none	STRG.21247.1,STRG.21247.2	2	Trinity_GG_11701_c0_g1_i1,blat.proc3829881.chain_2136	2
scaffold_5	retained_intron	15767010	15767201	+	asmbl_44681	none	blat.proc3829873.chain_2875	1	STRG.6763.1,blat.proc3829873.chain_2876,blat.proc3829873.chain_2877,blat.proc3829873.chain_2880,blat.proc3829873.chain_2882	5
scaffold_16	alt_donor	10485586	10485587	+	asmbl_17345	none	STRG.19606.1,blat.proc3829881.chain_464	2	STRG.19606.2	1
scaffold_28	retained_intron	9681871	9681946	+	asmbl_38498	none	blat.proc3829885.chain_3039	1	STRG.29979.1,blat.proc3829885.chain_3038,blat.proc3829885.chain_3040,blat.proc3829885.chain_3041	4
scaffold_22	alternate_exon	5934573	5935329	+	asmbl_29365	none	STRG.24924.1,Trinity_GG_13747_c2_g1_i1,blat.proc3829883.chain_1918	3	STRG.24924.2	1
scaffold_19	ends_in_intron	12823839	12823839	-	asmbl_21761	none	Trinity_GG_29568_c2_g1_i1,blat.proc3829897.chain_3283	2	STRG.22593.1,STRG.22593.2,STRG.22593.3,blat.proc3829897.chain_3274,blat.proc3829897.chain_3275,blat.proc3829897.chain_3277,blat.proc3829897.chain_3278,blat.proc3829897.chain_3279,blat.proc3829897.chain_3280	9
scaffold_1295	starts_in_intron	817	817	+	asmbl_9259,asmbl_9261	none	Trinity_GG_16885_c0_g1_i3,blat.proc3829885.chain_3497,blat.proc3829885.chain_3498	3	STRG.30557.1,blat.proc3829885.chain_3495,blat.proc3829885.chain_3496	3
scaffold_11	skipped_exon	6711357	6713812	-	asmbl_6714	none	STRG.13703.5	1	STRG.13703.1,STRG.13703.2,STRG.13703.4,blat.proc3829893.chain_2180,blat.proc3829893.chain_2182	5
scaffold_5	spliced_intron	5063957	5064081	-	asmbl_45414	none	STRG.5956.1,blat.proc3829889.chain_2049	2	Trinity_GG_20370_c0_g1_i1,blat.proc3829889.chain_2048	2
scaffold_11	starts_in_intron	7864294	7864294	-	asmbl_6784	none	Trinity_GG_24736_c0_g1_i2,blat.proc3829893.chain_2251	2	STRG.13777.1,Trinity_GG_24736_c0_g1_i3,blat.proc3829893.chain_2252	3
scaffold_21	retained_intron	1054629	1054775	-	asmbl_27400,asmbl_27402,asmbl_27405,asmbl_27406,asmbl_27408	none	STRG.23776.1,STRG.23776.2,STRG.23776.3,Trinity_GG_30261_c0_g1_i11,Trinity_GG_30261_c0_g1_i4,blat.proc3829899.chain_850,blat.proc3829899.chain_852	7	STRG.23776.4,Trinity_GG_30261_c0_g1_i9,blat.proc3829899.chain_854	3
scaffold_28	alt_acceptor	4132077	4132078	+	asmbl_38207,asmbl_38209	none	STRG.29584.1,STRG.29584.2,blat.proc3829885.chain_2716	3	STRG.29584.3	1
scaffold_18	spliced_intron	1899014	1899224	-	asmbl_19693	none	STRG.21072.8	1	STRG.21072.2,STRG.21072.6,STRG.21072.7,blat.proc3829897.chain_1897,blat.proc3829897.chain_1899,blat.proc3829897.chain_1900,blat.proc3829897.chain_1901	7
scaffold_1	ends_in_intron	12502047	12502047	-	asmbl_734	none	Trinity_GG_17457_c0_g2_i1,blat.proc3829887.chain_720	2	STRG.863.1,blat.proc3829887.chain_719	2
scaffold_5	alt_donor	7320400	7320401	+	asmbl_44153	none	STRG.6121.2	1	STRG.6121.1,Trinity_GG_3345_c0_g2_i1,blat.proc3829873.chain_2277	3
scaffold_24	retained_intron	1035334	1035594	+	asmbl_32070	none	Trinity_GG_14587_c1_g1_i1,blat.proc3829883.chain_3304	2	STRG.26358.1,blat.proc3829883.chain_3303	2
scaffold_2	alternate_exon	2883733	2883827	-	asmbl_22961,asmbl_22964	none	blat.proc3829887.chain_1496,blat.proc3829887.chain_1499	2	STRG.1733.1,STRG.1733.2,STRG.1733.3,blat.proc3829887.chain_1492,blat.proc3829887.chain_1493,blat.proc3829887.chain_1494,blat.proc3829887.chain_1495,blat.proc3829887.chain_1497,blat.proc3829887.chain_1498,blat.proc3829887.chain_1500	10
scaffold_26	skipped_exon	2960900	2963885	-	asmbl_34734,asmbl_34736	none	STRG.27973.2,STRG.27973.4,blat.proc3829901.chain_1233	3	STRG.27973.1,STRG.27973.3,blat.proc3829901.chain_1232,blat.proc3829901.chain_1234,blat.proc3829901.chain_1235	5
scaffold_17	alt_acceptor	2561590	2561591	-	asmbl_18810	none	STRG.20038.1	1	STRG.20038.2	1
scaffold_24	alt_donor	5940590	5940591	+	asmbl_32262,asmbl_32270,asmbl_32274,asmbl_32278,asmbl_32279,asmbl_32282,asmbl_32283	none	STRG.26645.1,blat.proc3829883.chain_3535,blat.proc3829883.chain_3537,blat.proc3829883.chain_3542,blat.proc3829883.chain_3543,blat.proc3829883.chain_3548,blat.proc3829883.chain_3549	7	blat.proc3829883.chain_3539,blat.proc3829883.chain_3544,blat.proc3829883.chain_3545,blat.proc3829883.chain_3547	4
scaffold_14	alt_donor	12592405	12592406	+	asmbl_12415,asmbl_12416	none	STRG.17564.3,STRG.17564.4,blat.proc3829879.chain_2187	3	STRG.17564.1,STRG.17564.2,blat.proc3829879.chain_2189	3
scaffold_11	starts_in_intron	11999789	11999789	-	asmbl_7037	none	STRG.14111.3	1	STRG.14111.4,Trinity_GG_24898_c0_g1_i1,blat.proc3829893.chain_2513	3
scaffold_4	spliced_intron	6286227	6286323	-	asmbl_41408,asmbl_41411	none	STRG.4498.1,Trinity_GG_19560_c0_g1_i2,Trinity_GG_19560_c0_g1_i6,blat.proc3829889.chain_665,blat.proc3829889.chain_666	5	Trinity_GG_19560_c0_g1_i9,blat.proc3829889.chain_662	2
scaffold_4	spliced_intron	8246234	8246442	-	asmbl_41506	none	blat.proc3829889.chain_764	1	blat.proc3829889.chain_765	1
scaffold_2	starts_in_intron	7218560	7218560	+	asmbl_24571,asmbl_24575,asmbl_24580	none	STRG.2054.6,Trinity_GG_1174_c0_g1_i12,Trinity_GG_1174_c0_g1_i13,Trinity_GG_1174_c0_g1_i2,blat.proc3829871.chain_2145,blat.proc3829871.chain_2152,blat.proc3829871.chain_2153	7	STRG.2054.1,STRG.2054.5,Trinity_GG_1174_c0_g1_i4,blat.proc3829871.chain_2147,blat.proc3829871.chain_2150	5
scaffold_19	alt_donor	12688769	12688770	-	asmbl_21738,asmbl_21740,asmbl_21741	none	STRG.22579.1,blat.proc3829897.chain_3329,blat.proc3829897.chain_3331,blat.proc3829897.chain_3332	4	STRG.22579.2,blat.proc3829897.chain_3330	2
scaffold_19	retained_intron	8753361	8753725	+	asmbl_22354	none	blat.proc3829881.chain_3259	1	blat.proc3829881.chain_3258	1
scaffold_1	retained_intron	6283987	6285080	-	asmbl_339	none	STRG.425.7,Trinity_GG_17251_c0_g1_i2,Trinity_GG_17251_c0_g1_i9,blat.proc3829887.chain_329,blat.proc3829887.chain_331	5	STRG.425.2,STRG.425.4,blat.proc3829887.chain_333	3
scaffold_6	ends_in_intron	14017501	14017501	-	asmbl_48915	none	Trinity_GG_21652_c0_g1_i1,blat.proc3829891.chain_479	2	STRG.8152.1,blat.proc3829891.chain_478	2
scaffold_2	starts_in_intron	5732507	5732507	+	asmbl_24467	none	Trinity_GG_1057_c0_g1_i1,blat.proc3829871.chain_1941	2	STRG.1964.1,blat.proc3829871.chain_1942	2
scaffold_6	retained_intron	5438307	5438405	-	asmbl_48364	none	blat.proc3829889.chain_3578	1	STRG.7508.1,blat.proc3829889.chain_3579	2
scaffold_1	alt_acceptor	18029282	18029283	-	asmbl_1074	none	STRG.1264.4	1	blat.proc3829871.chain_1253	1
scaffold_15	alt_acceptor	7895088	7895089	+	asmbl_14252	none	STRG.18355.2	1	STRG.18355.1	1
scaffold_25	ends_in_intron	9290694	9290694	+	asmbl_33796	none	blat.proc3829885.chain_716	1	STRG.27727.1,blat.proc3829885.chain_715	2
scaffold_3	alternate_exon	15800142	15800199	+	asmbl_40541	none	STRG.3855.1,Trinity_GG_2164_c0_g1_i1,blat.proc3829873.chain_259	3	STRG.3855.2	1
scaffold_5	retained_intron	10170961	10171274	+	asmbl_44334	none	blat.proc3829873.chain_2377	1	blat.proc3829873.chain_2378	1
scaffold_13	retained_exon	5390824	5390840	+	asmbl_10829	none	STRG.15821.2	1	STRG.15821.1,blat.proc3829879.chain_457	2
scaffold_8	skipped_exon	12728585	12728827	-	asmbl_53227,asmbl_53228	none	STRG.10443.2,blat.proc3829891.chain_2565	2	STRG.10443.1,blat.proc3829891.chain_2564	2
scaffold_5	retained_intron	6012524	6013080	-	asmbl_45469	none	blat.proc3829889.chain_2117	1	STRG.6011.1,blat.proc3829889.chain_2115	2
scaffold_26	spliced_intron	9773422	9774402	+	asmbl_35778,asmbl_35781,asmbl_35787,asmbl_35788,asmbl_35790	none	STRG.28501.1,STRG.28501.3,STRG.28501.5,STRG.28501.9,blat.proc3829885.chain_1535,blat.proc3829885.chain_1538	6	STRG.28501.2,STRG.28501.6,Trinity_GG_15770_c0_g1_i1,Trinity_GG_15770_c0_g1_i5,blat.proc3829885.chain_1533,blat.proc3829885.chain_1534	6
scaffold_13	retained_intron	9254576	9254748	+	asmbl_11171	none	Trinity_GG_8857_c1_g1_i3,blat.proc3829879.chain_847	2	STRG.16172.1,Trinity_GG_8857_c1_g1_i4,blat.proc3829879.chain_848	3
scaffold_16	alt_donor	7115697	7115698	-	asmbl_16339	none	STRG.19378.2	1	STRG.19378.3	1
scaffold_5	starts_in_intron	15030917	15030917	-	asmbl_46011	none	blat.proc3829889.chain_2686	1	STRG.6687.1,blat.proc3829889.chain_2685,blat.proc3829889.chain_2687	3
scaffold_11	alt_donor	4751643	4751644	+	asmbl_5477	none	STRG.13563.1,blat.proc3829877.chain_2010	2	STRG.13563.2	1
scaffold_14	retained_exon	3156649	3156720	+	asmbl_11883,asmbl_11886,asmbl_11891,asmbl_11892,asmbl_11894,asmbl_11898	none	STRG.16893.2,STRG.16893.3,blat.proc3829879.chain_1625,blat.proc3829879.chain_1628,blat.proc3829879.chain_1629,blat.proc3829879.chain_1637,blat.proc3829879.chain_1639	7	STRG.16893.1,blat.proc3829879.chain_1626,blat.proc3829879.chain_1630,blat.proc3829879.chain_1631,blat.proc3829879.chain_1632,blat.proc3829879.chain_1633,blat.proc3829879.chain_1634,blat.proc3829879.chain_1635,blat.proc3829879.chain_1636,blat.proc3829879.chain_1638,blat.proc3829879.chain_1640	11
scaffold_10	starts_in_intron	13460887	13460887	+	asmbl_4876	none	blat.proc3829877.chain_1491	1	STRG.12923.1,blat.proc3829877.chain_1492	2
scaffold_12	alternate_exon	10527192	10527416	-	asmbl_7889	none	STRG.15003.2,blat.proc3829893.chain_3393	2	STRG.15003.1,Trinity_GG_25382_c0_g1_i2,blat.proc3829893.chain_3392	3
scaffold_23	spliced_intron	9517036	9517096	-	asmbl_31817	none	blat.proc3829899.chain_3260	1	Trinity_GG_31639_c1_g1_i1,blat.proc3829899.chain_3259	2
scaffold_16	alternate_exon	7824795	7824847	+	asmbl_17155	none	STRG.19414.2,blat.proc3829881.chain_295	2	STRG.19414.1	1
scaffold_7	alternate_exon	17319601	17319708	+	asmbl_51362	none	STRG.9596.1	1	STRG.9596.2,STRG.9596.3,blat.proc3829875.chain_1972	3
scaffold_4	spliced_intron	5651423	5651635	-	asmbl_41352,asmbl_41356,asmbl_41357,asmbl_41359,asmbl_41360,asmbl_41362,asmbl_41363,asmbl_41365,asmbl_41366,asmbl_41369	none	STRG.4469.2,STRG.4469.4,Trinity_GG_19533_c0_g1_i2,blat.proc3829889.chain_602,blat.proc3829889.chain_603,blat.proc3829889.chain_605,blat.proc3829889.chain_608,blat.proc3829889.chain_610,blat.proc3829889.chain_611,blat.proc3829889.chain_612,blat.proc3829889.chain_613	11	STRG.4469.1,blat.proc3829889.chain_606,blat.proc3829889.chain_609	3
scaffold_9	spliced_intron	5468453	5468592	+	asmbl_54028	none	STRG.11112.2,Trinity_GG_6186_c0_g1_i1,blat.proc3829875.chain_3569	3	STRG.11112.1,blat.proc3829875.chain_3568	2
scaffold_21	spliced_intron	10097905	10097938	+	asmbl_28867	none	STRG.24457.1	1	STRG.24457.2,STRG.24457.3	2
scaffold_25	alt_acceptor	430320	430321	-	asmbl_33976	none	STRG.27065.1,blat.proc3829901.chain_316	2	STRG.27065.2,blat.proc3829901.chain_317	2
scaffold_12	alternate_exon	7413884	7413913	-	asmbl_7709	none	STRG.14815.3,blat.proc3829893.chain_3182	2	STRG.14815.1,blat.proc3829893.chain_3183	2
scaffold_20	retained_intron	4262257	4262277	-	asmbl_26650	none	STRG.23096.1	1	STRG.23096.2	1
scaffold_1	retained_intron	2131805	2132592	+	asmbl_1529	none	STRG.143.1,blat.proc3829871.chain_172	2	blat.proc3829871.chain_171	1
scaffold_21	ends_in_intron	1053595	1053595	-	asmbl_27407,asmbl_27408	none	STRG.23776.3,STRG.23776.4	2	STRG.23776.1,STRG.23776.2,Trinity_GG_30261_c0_g1_i11,Trinity_GG_30261_c0_g1_i4,Trinity_GG_30261_c0_g1_i7,Trinity_GG_30261_c0_g1_i9,blat.proc3829899.chain_850,blat.proc3829899.chain_851,blat.proc3829899.chain_852,blat.proc3829899.chain_854	10
scaffold_14	alt_acceptor	13222043	13222044	+	asmbl_12445,asmbl_12449,asmbl_12450,asmbl_12453	none	STRG.17600.2,STRG.17600.3,STRG.17600.4,STRG.17600.5,blat.proc3829879.chain_2203,blat.proc3829879.chain_2205	6	STRG.17600.1,blat.proc3829879.chain_2204	2
scaffold_6	retained_intron	13871377	13871524	+	asmbl_47478	none	STRG.8125.3,Trinity_GG_21655_c0_g1_i3,Trinity_GG_4470_c0_g1_i6,blat.proc3829875.chain_559,blat.proc3829891.chain_485	5	STRG.8125.2,blat.proc3829875.chain_561,blat.proc3829875.chain_563	3
scaffold_25	spliced_intron	3755005	3755481	+	asmbl_33459	none	STRG.27310.1,blat.proc3829885.chain_336,blat.proc3829885.chain_338	3	STRG.27310.2,blat.proc3829885.chain_337	2
scaffold_10	spliced_intron	12726885	12726904	+	asmbl_4813	none	STRG.12846.2	1	STRG.12846.1	1
scaffold_9	retained_exon	17496036	17496107	-	asmbl_55617	none	STRG.11833.2,Trinity_GG_23550_c0_g1_i2,blat.proc3829893.chain_204	3	STRG.11833.1,Trinity_GG_23550_c0_g1_i1,blat.proc3829893.chain_203	3
scaffold_1	alternate_exon	12338334	12339919	-	asmbl_723	none	STRG.843.1	1	blat.proc3829887.chain_740,blat.proc3829887.chain_744	2
scaffold_5	alternate_exon	5039950	5040777	+	asmbl_43991,asmbl_43994	none	STRG.5951.1,STRG.5951.2,blat.proc3829873.chain_2115	3	Trinity_GG_3261_c3_g1_i1,blat.proc3829873.chain_2114,blat.proc3829873.chain_2117	3
scaffold_20	alt_donor	4262276	4262277	-	asmbl_26649	none	STRG.23096.2	1	STRG.23096.3	1
scaffold_26	spliced_intron	6663772	6663872	+	asmbl_35627,asmbl_35629	none	STRG.28362.1,STRG.28362.2,blat.proc3829885.chain_1353	3	STRG.28362.3,Trinity_GG_15670_c0_g1_i1,blat.proc3829885.chain_1355	3
scaffold_20	alt_donor	11566982	11566983	+	asmbl_26226	none	STRG.23649.2	1	STRG.23649.1,blat.proc3829883.chain_792,blat.proc3829883.chain_793	3
scaffold_6	alternate_exon	3051355	3051874	+	asmbl_46744,asmbl_46745,asmbl_46746	none	STRG.7308.1,blat.proc3829873.chain_3438,blat.proc3829873.chain_3439	3	blat.proc3829873.chain_3448	1
scaffold_3	spliced_intron	6240997	6241570	-	asmbl_38882,asmbl_38884,asmbl_38888,asmbl_38889,asmbl_38890	none	STRG.3263.2,STRG.3263.4,STRG.3263.5,STRG.3263.6,STRG.3263.7,blat.proc3829887.chain_3032	6	STRG.3263.1,blat.proc3829887.chain_3031,blat.proc3829887.chain_3034,blat.proc3829887.chain_3035,blat.proc3829887.chain_3036	5
scaffold_6	spliced_intron	15087115	15087248	-	asmbl_48987	none	STRG.8265.1	1	blat.proc3829891.chain_571	1
scaffold_10	starts_in_intron	6982810	6982810	-	asmbl_3440	none	blat.proc3829893.chain_1008	1	STRG.12508.1,blat.proc3829893.chain_1007	2
scaffold_21	retained_intron	1054388	1054575	-	asmbl_27401	none	Trinity_GG_30261_c0_g1_i7,blat.proc3829899.chain_851	2	STRG.23776.1,STRG.23776.4,Trinity_GG_30261_c0_g1_i4,Trinity_GG_30261_c0_g1_i9,blat.proc3829899.chain_852,blat.proc3829899.chain_854	6
scaffold_2	alternate_exon	7783101	7783372	+	asmbl_24613	none	blat.proc3829871.chain_2208	1	STRG.2076.4,STRG.2076.7,blat.proc3829871.chain_2202,blat.proc3829871.chain_2207,blat.proc3829871.chain_2213	5
scaffold_5	spliced_intron	5985954	5986256	-	asmbl_45460	none	STRG.6007.2,blat.proc3829889.chain_2091	2	STRG.6007.1,Trinity_GG_20394_c0_g1_i2,blat.proc3829889.chain_2092	3
scaffold_23	alternate_exon	4228479	4229523	-	asmbl_31569,asmbl_31570,asmbl_31574	none	STRG.25818.1,STRG.25818.5,blat.proc3829899.chain_2945,blat.proc3829899.chain_2949	4	STRG.25818.3,blat.proc3829899.chain_2943,blat.proc3829899.chain_2944	3
scaffold_723	retained_exon	2439	2510	-	asmbl_51569	none	STRG.30418.1,blat.proc3829901.chain_3463	2	STRG.30418.2,blat.proc3829901.chain_3461	2
scaffold_10	alt_donor	190579	190580	-	asmbl_2833	none	STRG.11902.1,blat.proc3829893.chain_311	2	STRG.11902.2,blat.proc3829893.chain_312	2
scaffold_15	retained_exon	6884075	6884143	-	asmbl_15279,asmbl_15281,asmbl_15283,asmbl_15286	none	STRG.18290.2,blat.proc3829895.chain_2933,blat.proc3829895.chain_2934,blat.proc3829895.chain_2936,blat.proc3829895.chain_2940	5	STRG.18290.3,Trinity_GG_27246_c0_g1_i5,blat.proc3829895.chain_2935	3
scaffold_26	spliced_intron	3573675	3573769	+	asmbl_35327	none	STRG.28019.1,blat.proc3829885.chain_988	2	blat.proc3829885.chain_989	1
scaffold_10	retained_exon	6598566	6598635	-	asmbl_3393,asmbl_3395	none	STRG.12472.1,blat.proc3829893.chain_937,blat.proc3829893.chain_938	3	STRG.12472.2	1
scaffold_24	starts_in_intron	8943097	8943097	-	asmbl_33114	none	blat.proc3829901.chain_207	1	STRG.26895.1,blat.proc3829901.chain_205	2
scaffold_21	starts_in_intron	11966294	11966294	-	asmbl_28167	none	Trinity_GG_30780_c0_g1_i1,blat.proc3829899.chain_1755	2	STRG.24636.1,STRG.24636.2,blat.proc3829899.chain_1754	3
scaffold_5	retained_intron	6708613	6708819	-	asmbl_45518	none	STRG.6069.1,blat.proc3829889.chain_2076	2	STRG.6069.2,Trinity_GG_20388_c0_g1_i1,Trinity_GG_20388_c0_g1_i2,blat.proc3829889.chain_2074,blat.proc3829889.chain_2075	5
scaffold_3	starts_in_intron	795038	795038	+	asmbl_39768	none	STRG.2906.2	1	STRG.2906.1,blat.proc3829871.chain_3073,blat.proc3829871.chain_3074	3
scaffold_4	alt_acceptor	8989644	8989645	-	asmbl_41537,asmbl_41540	none	STRG.4717.3,STRG.4717.5	2	STRG.4717.1,STRG.4717.4,blat.proc3829889.chain_759	3
scaffold_2	alt_acceptor	33461	33462	+	asmbl_24079,asmbl_24080,asmbl_24081,asmbl_24083	none	STRG.1493.1,STRG.1493.3,STRG.1493.4,Trinity_GG_850_c0_g1_i3,blat.proc3829871.chain_1522,blat.proc3829871.chain_1527	6	STRG.1493.5,blat.proc3829871.chain_1525	2
scaffold_20	alternate_exon	11776068	11776583	-	asmbl_27122	none	STRG.23671.1,Trinity_GG_30187_c0_g1_i2,blat.proc3829899.chain_670	3	STRG.23671.2,Trinity_GG_30187_c0_g1_i3,blat.proc3829899.chain_671	3
scaffold_15	spliced_intron	6190234	6190253	+	asmbl_14188	none	STRG.18269.2	1	STRG.18269.1,blat.proc3829879.chain_2895,blat.proc3829879.chain_2896	3
scaffold_23	retained_intron	2326610	2326740	-	asmbl_31450	none	STRG.25683.1,Trinity_GG_31350_c0_g1_i2,Trinity_GG_34063_c0_g1_i1,blat.proc3829899.chain_2744	4	blat.proc3829899.chain_2745	1
scaffold_10	alt_acceptor	3794343	3794344	-	asmbl_3143,asmbl_3146	none	STRG.12214.1,blat.proc3829893.chain_665,blat.proc3829893.chain_667	3	STRG.12214.3	1
scaffold_22	spliced_intron	4239789	4240805	-	asmbl_29980	none	STRG.24838.3	1	blat.proc3829899.chain_1980	1
scaffold_15	alt_donor	11142184	11142185	-	asmbl_15499	none	blat.proc3829895.chain_3283	1	blat.proc3829895.chain_3286,blat.proc3829895.chain_3287,blat.proc3829895.chain_3288,blat.proc3829895.chain_3289	4
scaffold_14	ends_in_intron	12151387	12151387	+	asmbl_12400	none	blat.proc3829879.chain_2230	1	STRG.17532.1,blat.proc3829879.chain_2229,blat.proc3829879.chain_2231	3
scaffold_5	alternate_exon	10196619	10198041	-	asmbl_45703	none	blat.proc3829889.chain_2386	1	blat.proc3829889.chain_2388	1
scaffold_3	retained_intron	3271219	3272019	-	asmbl_38719	none	Trinity_GG_18653_c0_g1_i2,blat.proc3829887.chain_2795	2	STRG.3088.1,blat.proc3829887.chain_2794,blat.proc3829887.chain_2796	3
scaffold_12	starts_in_intron	5066350	5066350	-	asmbl_7609	none	blat.proc3829893.chain_2984	1	STRG.14666.1,blat.proc3829893.chain_2985	2
scaffold_25	alt_donor	7927631	7927632	+	asmbl_33690	none	STRG.27606.3,Trinity_GG_15185_c0_g1_i2,blat.proc3829885.chain_569	3	STRG.27606.1,STRG.27606.2,Trinity_GG_15185_c0_g1_i1,blat.proc3829885.chain_568	4
scaffold_8	alt_donor	9126268	9126269	-	asmbl_53004,asmbl_53006,asmbl_53007	none	STRG.10161.2,STRG.10161.4,blat.proc3829891.chain_2335	3	STRG.10161.1,STRG.10161.3,blat.proc3829891.chain_2336	3
scaffold_1	spliced_intron	6299428	6299549	-	asmbl_357	none	STRG.424.5	1	STRG.424.3,blat.proc3829887.chain_303	2
scaffold_18	retained_intron	5910191	5910450	+	asmbl_20650	none	Trinity_GG_11755_c0_g1_i1,blat.proc3829881.chain_2261	2	STRG.21332.2,blat.proc3829881.chain_2260	2
scaffold_3	spliced_intron	11404737	11404768	+	asmbl_40304	none	STRG.3567.2	1	Trinity_GG_2022_c0_g1_i1	1
scaffold_17	alt_acceptor	6611707	6611708	+	asmbl_17991	none	STRG.20301.2	1	STRG.20301.1,blat.proc3829881.chain_1046	2
scaffold_2	retained_intron	13063387	13063523	+	asmbl_24846	none	blat.proc3829871.chain_2456	1	STRG.2330.1,STRG.2330.2,blat.proc3829871.chain_2457,blat.proc3829871.chain_2458,blat.proc3829871.chain_2459,blat.proc3829871.chain_2461	6
scaffold_17	alt_donor	9689110	9689111	+	asmbl_18248	none	STRG.20576.1,Trinity_GG_11262_c0_g1_i2,blat.proc3829881.chain_1371	3	STRG.20576.2,STRG.20576.3,Trinity_GG_11262_c0_g1_i1,Trinity_GG_11262_c0_g1_i3,blat.proc3829881.chain_1370,blat.proc3829881.chain_1372	6
scaffold_19	alt_donor	858402	858403	+	asmbl_22021	none	blat.proc3829881.chain_2793	1	STRG.21868.2,blat.proc3829881.chain_2794	2
scaffold_17	spliced_intron	7965060	7965092	-	asmbl_19108	none	STRG.20404.3	1	STRG.20404.1,STRG.20404.2,blat.proc3829897.chain_1396	3
scaffold_16	alt_acceptor	810150	810151	-	asmbl_16078,asmbl_16080,asmbl_16082	none	STRG.19052.2,STRG.19052.4,blat.proc3829895.chain_3747	3	STRG.19052.1,STRG.19052.3,blat.proc3829895.chain_3749	3
scaffold_10	spliced_intron	10283622	10283975	-	asmbl_3621	none	blat.proc3829893.chain_1238	1	STRG.12709.3,blat.proc3829893.chain_1236	2
scaffold_26	retained_exon	1995175	1995532	+	asmbl_35258	none	blat.proc3829885.chain_907	1	STRG.27926.2	1
scaffold_25	alt_donor	1439395	1439396	+	asmbl_33366,asmbl_33370	none	STRG.27161.3,Trinity_GG_14981_c0_g1_i1,blat.proc3829885.chain_226,blat.proc3829885.chain_228	4	STRG.27161.1,STRG.27161.2,STRG.27161.4,blat.proc3829885.chain_227	4
scaffold_4	alt_acceptor	15031824	15031825	+	asmbl_43259	none	blat.proc3829873.chain_1457	1	blat.proc3829873.chain_1458	1
scaffold_20	starts_in_intron	6977509	6977509	+	asmbl_25841	none	Trinity_GG_12841_c0_g1_i3,blat.proc3829883.chain_384	2	STRG.23248.1,STRG.23248.2,STRG.23248.3,blat.proc3829883.chain_382,blat.proc3829883.chain_383	5
scaffold_17	alt_donor	8615192	8615193	+	asmbl_18134	none	blat.proc3829881.chain_1270	1	STRG.20462.1,STRG.20462.3,STRG.20462.4,STRG.20462.5,blat.proc3829881.chain_1266,blat.proc3829881.chain_1267,blat.proc3829881.chain_1268,blat.proc3829881.chain_1269,blat.proc3829881.chain_1271	9
scaffold_4	alt_acceptor	14290981	14290982	+	asmbl_43192	none	STRG.5049.2	1	STRG.5049.1,blat.proc3829873.chain_1371	2
scaffold_3	alternate_exon	7715273	7715582	-	asmbl_38928	none	STRG.3361.2,Trinity_GG_18844_c3_g1_i1,blat.proc3829887.chain_3180	3	blat.proc3829887.chain_3170,blat.proc3829887.chain_3174	2
scaffold_21	alt_acceptor	5958454	5958455	-	asmbl_27737	none	blat.proc3829899.chain_1204	1	STRG.24113.1,blat.proc3829899.chain_1203	2
scaffold_10	starts_in_intron	2900786	2900786	+	asmbl_4292	none	Trinity_GG_6733_c0_g1_i1,blat.proc3829877.chain_811	2	STRG.12098.1	1
scaffold_5	alternate_exon	5607767	5608151	+	asmbl_44016	none	STRG.5977.1,blat.proc3829873.chain_2066	2	blat.proc3829873.chain_2067	1
scaffold_27	retained_intron	6069445	6069599	+	asmbl_36324	none	STRG.28987.1,blat.proc3829885.chain_2118	2	STRG.28987.2,STRG.28987.3,blat.proc3829885.chain_2119	3
scaffold_13	alt_donor	14564864	14564865	-	asmbl_10163,asmbl_10169,asmbl_10171	none	STRG.16497.1,Trinity_GG_26221_c0_g1_i2,blat.proc3829895.chain_1167,blat.proc3829895.chain_1168,blat.proc3829895.chain_1172	5	STRG.16497.2,STRG.16497.3,STRG.16497.4,STRG.16497.5,Trinity_GG_26221_c0_g1_i4,blat.proc3829895.chain_1169	6
scaffold_5	spliced_intron	420430	420561	-	asmbl_45169	none	blat.proc3829889.chain_1663	1	STRG.5608.1	1
scaffold_15	alternate_exon	3395683	3396554	-	asmbl_15105,asmbl_15106	none	STRG.18107.1,blat.proc3829895.chain_2867,blat.proc3829895.chain_2869	3	STRG.18107.3,STRG.18107.4	2
scaffold_13	spliced_intron	6616931	6617079	+	asmbl_10938	none	blat.proc3829879.chain_586	1	STRG.15948.1,blat.proc3829879.chain_587,blat.proc3829879.chain_588	3
scaffold_18	alternate_exon	3028459	3031960	-	asmbl_19779	none	STRG.21135.1,blat.proc3829897.chain_2046,blat.proc3829897.chain_2047	3	STRG.21135.2	1
scaffold_5	alt_donor	18561081	18561082	+	asmbl_44921,asmbl_44923	none	STRG.6978.5,Trinity_GG_3847_c0_g1_i8,blat.proc3829873.chain_3146	3	STRG.6978.1,STRG.6978.2,STRG.6978.3,STRG.6978.4,Trinity_GG_3847_c0_g1_i2,blat.proc3829873.chain_3147,blat.proc3829873.chain_3148,blat.proc3829873.chain_3150	8
scaffold_11	spliced_intron	8100269	8100367	+	asmbl_5686,asmbl_5687,asmbl_5688,asmbl_5689,asmbl_5692	none	STRG.13810.1,STRG.13810.2,STRG.13810.3,STRG.13810.4,Trinity_GG_7614_c0_g1_i1,Trinity_GG_7614_c0_g1_i3,Trinity_GG_7614_c0_g1_i4,Trinity_GG_7614_c0_g1_i6,blat.proc3829877.chain_2293,blat.proc3829877.chain_2294,blat.proc3829877.chain_2295,blat.proc3829877.chain_2296	12	Trinity_GG_7614_c0_g1_i2,Trinity_GG_7614_c0_g1_i5,blat.proc3829877.chain_2292,blat.proc3829877.chain_2297	4
scaffold_12	alt_donor	12290940	12290941	-	asmbl_7990	none	STRG.15114.5	1	STRG.15114.2,STRG.15114.4,STRG.15114.6	3
scaffold_13	retained_exon	11586690	11586913	+	asmbl_11275,asmbl_11276	none	STRG.16295.2,blat.proc3829879.chain_1015,blat.proc3829879.chain_1018	3	STRG.16295.1,blat.proc3829879.chain_1014,blat.proc3829879.chain_1023	3
scaffold_6	retained_exon	4932958	4933047	-	asmbl_48314	none	STRG.7462.1,blat.proc3829889.chain_3534	2	STRG.7462.2,blat.proc3829889.chain_3533	2
scaffold_4	alt_donor	4414847	4414848	+	asmbl_42578	none	Trinity_GG_2404_c0_g1_i14,blat.proc3829873.chain_692	2	STRG.4344.3,Trinity_GG_2404_c0_g1_i19,Trinity_GG_2404_c0_g1_i5,Trinity_GG_2404_c0_g1_i8,blat.proc3829873.chain_681,blat.proc3829873.chain_687,blat.proc3829873.chain_688,blat.proc3829873.chain_689,blat.proc3829873.chain_695,blat.proc3829873.chain_696	10
scaffold_14	alt_acceptor	12624817	12624818	-	asmbl_13564,asmbl_13567,asmbl_13569,asmbl_13571	none	STRG.17566.1,STRG.17566.2,blat.proc3829895.chain_2327,blat.proc3829895.chain_2330,blat.proc3829895.chain_2331	5	blat.proc3829895.chain_2329,blat.proc3829895.chain_2332	2
scaffold_156	alternate_exon	6719	6959	+	asmbl_15986	none	STRG.30172.1,blat.proc3829885.chain_3227	2	STRG.30172.2,blat.proc3829885.chain_3226	2
scaffold_12	alt_donor	16175315	16175316	+	asmbl_9109,asmbl_9111	none	STRG.15359.1,STRG.15359.2,Trinity_GG_8421_c0_g1_i4,blat.proc3829877.chain_3742	4	STRG.15359.3,Trinity_GG_8421_c0_g1_i2,blat.proc3829877.chain_3744	3
scaffold_2	spliced_intron	13754062	13754214	-	asmbl_23538,asmbl_23540	none	STRG.2371.1,blat.proc3829887.chain_2226,blat.proc3829887.chain_2227	3	blat.proc3829887.chain_2225	1
scaffold_23	alternate_exon	4226700	4226785	-	asmbl_31575	none	blat.proc3829899.chain_2946	1	STRG.25818.1,STRG.25818.2,blat.proc3829899.chain_2943,blat.proc3829899.chain_2949	4
scaffold_16	starts_in_intron	4042758	4042758	-	asmbl_16210	none	blat.proc3829897.chain_235	1	STRG.19210.2,blat.proc3829897.chain_236	2
scaffold_7	retained_intron	1235216	1235301	+	asmbl_50468,asmbl_50469,asmbl_50470,asmbl_50485	none	STRG.8627.2,STRG.8627.6,STRG.8627.8,Trinity_GG_4740_c0_g1_i13,Trinity_GG_4740_c0_g1_i14,blat.proc3829875.chain_1044,blat.proc3829875.chain_1045,blat.proc3829875.chain_1048,blat.proc3829875.chain_1049	9	STRG.8627.5,blat.proc3829875.chain_1043	2
scaffold_7	alt_acceptor	15551499	15551500	-	asmbl_50197	none	STRG.9546.1	1	STRG.9546.2,STRG.9546.3	2
scaffold_18	alt_acceptor	8726178	8726179	+	asmbl_20884,asmbl_20886,asmbl_20888	none	STRG.21533.2,STRG.21533.4,blat.proc3829881.chain_2484,blat.proc3829881.chain_2485	4	STRG.21533.1,blat.proc3829881.chain_2482,blat.proc3829881.chain_2483	3
scaffold_21	retained_intron	6190737	6191794	+	asmbl_28639,asmbl_28641	none	Trinity_GG_13323_c0_g1_i3,blat.proc3829883.chain_1190,blat.proc3829883.chain_1191	3	STRG.24137.1,blat.proc3829883.chain_1192	2
scaffold_6	alt_donor	16888616	16888617	-	asmbl_49109,asmbl_49110	none	STRG.8402.1,STRG.8402.2,Trinity_GG_21814_c0_g1_i3,Trinity_GG_21814_c0_g1_i5,blat.proc3829891.chain_737,blat.proc3829891.chain_738	6	Trinity_GG_21814_c0_g1_i2,blat.proc3829891.chain_740	2
scaffold_20	retained_intron	8338716	8338886	-	asmbl_26901,asmbl_26903,asmbl_26904,asmbl_26905	none	STRG.23364.1,blat.proc3829899.chain_430,blat.proc3829899.chain_431,blat.proc3829899.chain_432,blat.proc3829899.chain_433	5	STRG.23364.2,STRG.23364.3,blat.proc3829899.chain_434,blat.proc3829899.chain_435	4
scaffold_4	alt_acceptor	13416717	13416718	+	asmbl_43122	none	STRG.4972.2	1	STRG.4972.1,blat.proc3829873.chain_1257,blat.proc3829873.chain_1258,blat.proc3829873.chain_1259,blat.proc3829873.chain_1260	5
scaffold_4	alternate_exon	18758543	18758575	-	asmbl_42139	none	STRG.5464.2	1	STRG.5464.1,STRG.5464.3	2
scaffold_2	retained_intron	19892061	19892133	-	asmbl_23894	none	blat.proc3829887.chain_2662	1	STRG.2839.1	1
scaffold_3	retained_exon	19803452	19803532	+	asmbl_40729	none	STRG.4094.1,blat.proc3829873.chain_434	2	STRG.4094.2,STRG.4094.3	2
scaffold_14	alt_acceptor	7966006	7966007	-	asmbl_13220	none	STRG.17196.1,Trinity_GG_26643_c1_g1_i2,blat.proc3829895.chain_1886	3	STRG.17196.2,Trinity_GG_26643_c1_g1_i1,blat.proc3829895.chain_1885	3
scaffold_13	starts_in_intron	8798604	8798604	-	asmbl_9937	none	blat.proc3829895.chain_914	1	STRG.16133.1,blat.proc3829895.chain_915	2
scaffold_13	spliced_intron	9535986	9536192	-	asmbl_9994	none	STRG.16202.4	1	STRG.16202.1,STRG.16202.2,blat.proc3829895.chain_990	3
scaffold_14	alternate_exon	7259041	7259071	-	asmbl_13166	none	STRG.17147.1	1	STRG.17147.2	1
scaffold_17	retained_intron	9095446	9095758	-	asmbl_19202	none	blat.proc3829897.chain_1472	1	STRG.20532.1,blat.proc3829897.chain_1473	2
scaffold_19	ends_in_intron	8346372	8346372	+	asmbl_22323	none	blat.proc3829881.chain_3192	1	STRG.22282.1,Trinity_GG_12301_c0_g1_i2,blat.proc3829881.chain_3193	3
scaffold_1	spliced_intron	8733024	8733104	-	asmbl_488,asmbl_490	none	STRG.574.1,blat.proc3829887.chain_482,blat.proc3829887.chain_484	3	blat.proc3829887.chain_481	1
scaffold_21	alt_donor	7729050	7729051	+	asmbl_28780	none	STRG.24301.1	1	STRG.24301.2,STRG.24301.4,blat.proc3829883.chain_1448,blat.proc3829883.chain_1449	4
scaffold_21	starts_in_intron	3173702	3173702	+	asmbl_28489	none	blat.proc3829883.chain_1058	1	STRG.23945.1,STRG.23945.2,STRG.23945.3,STRG.23945.6,blat.proc3829883.chain_1059,blat.proc3829883.chain_1060	6
scaffold_13	alternate_exon	9325388	9326093	-	asmbl_9981	none	STRG.16187.4	1	STRG.16187.1,blat.proc3829895.chain_959	2
scaffold_14	alternate_exon	3379942	3380141	+	asmbl_11913	none	STRG.16908.1,blat.proc3829879.chain_1620	2	STRG.16908.2	1
scaffold_23	spliced_intron	3656249	3656339	+	asmbl_30764,asmbl_30765	none	STRG.25778.1,Trinity_GG_14190_c0_g1_i1,blat.proc3829883.chain_2610,blat.proc3829883.chain_2612	4	STRG.25778.2,Trinity_GG_14190_c0_g1_i3,blat.proc3829883.chain_2611	3
scaffold_13	spliced_intron	2636936	2637161	+	asmbl_10615	none	STRG.15549.1,Trinity_GG_8560_c0_g1_i1,Trinity_GG_8560_c0_g1_i3,blat.proc3829879.chain_272	4	STRG.15549.2,Trinity_GG_8560_c0_g1_i4	2
scaffold_2	alt_donor	15686210	15686211	+	asmbl_25091	none	STRG.2521.2,Trinity_GG_1432_c0_g1_i2,blat.proc3829871.chain_2714	3	STRG.2521.1,STRG.2521.3,Trinity_GG_1432_c0_g1_i1,Trinity_GG_1432_c0_g1_i4,blat.proc3829871.chain_2712	5
scaffold_5	skipped_exon	7029956	7031130	+	asmbl_44138,asmbl_44139	none	STRG.6108.4,Trinity_GG_3337_c1_g1_i4,blat.proc3829873.chain_2261	3	STRG.6108.1,STRG.6108.2,STRG.6108.3,blat.proc3829873.chain_2262	4
scaffold_1	alternate_exon	13720981	13721053	-	asmbl_845	none	STRG.985.2,blat.proc3829887.chain_874	2	STRG.985.1,blat.proc3829887.chain_875	2
scaffold_3	starts_in_intron	6065639	6065639	-	asmbl_38852	none	blat.proc3829887.chain_3027	1	STRG.3254.3	1
scaffold_9	spliced_intron	8395093	8395319	+	asmbl_54157,asmbl_54161	none	STRG.11249.1,STRG.11249.3,blat.proc3829877.chain_17	3	STRG.11249.2,STRG.11249.4,blat.proc3829877.chain_18,blat.proc3829877.chain_19,blat.proc3829877.chain_21	5
scaffold_3	alternate_exon	16346338	16347303	-	asmbl_39445	none	STRG.3908.2,Trinity_GG_19193_c2_g1_i1,blat.proc3829889.chain_1,blat.proc3829889.chain_2	4	STRG.3908.1,blat.proc3829887.chain_3747	2
scaffold_11	starts_in_intron	2079942	2079942	+	asmbl_5316	none	blat.proc3829877.chain_1866	1	STRG.13360.1,blat.proc3829877.chain_1865	2
scaffold_11	alt_donor	3496620	3496621	+	asmbl_5398,asmbl_5401,asmbl_5402	none	STRG.13472.2,STRG.13472.3,blat.proc3829877.chain_1902	3	STRG.13472.4	1
scaffold_18	alt_acceptor	7943323	7943324	-	asmbl_20024	none	STRG.21483.3,blat.proc3829897.chain_2326	2	STRG.21483.2	1
scaffold_20	retained_exon	1618621	1618742	-	asmbl_26519	none	STRG.22881.1	1	STRG.22881.2,STRG.22881.4	2
scaffold_15	starts_in_intron	7281461	7281461	+	asmbl_14226	none	Trinity_GG_10039_c0_g1_i1,blat.proc3829879.chain_2926	2	STRG.18311.1,blat.proc3829879.chain_2927	2
scaffold_23	starts_in_intron	5757877	5757877	+	asmbl_30893	none	Trinity_GG_14268_c1_g1_i2	1	STRG.25925.1,Trinity_GG_14268_c1_g1_i1,blat.proc3829883.chain_2737	3
scaffold_28	ends_in_intron	5204751	5204751	-	asmbl_37570	none	Trinity_GG_33622_c1_g1_i1,blat.proc3829901.chain_2763	2	STRG.29647.1,blat.proc3829901.chain_2762	2
scaffold_23	retained_intron	10938115	10938394	-	asmbl_31893	none	Trinity_GG_31688_c0_g1_i4	1	STRG.26279.1,STRG.26279.2	2
scaffold_8	spliced_intron	14130033	14130103	+	asmbl_52351	none	STRG.10511.1,blat.proc3829875.chain_3017	2	STRG.10511.2	1
scaffold_22	retained_intron	4416451	4416579	-	asmbl_30029	none	blat.proc3829899.chain_1904	1	STRG.24852.1,blat.proc3829899.chain_1905	2
scaffold_4	alt_donor	19605327	19605328	-	asmbl_42220,asmbl_42221	none	STRG.5547.1,STRG.5547.2	2	STRG.5547.4	1
scaffold_300	retained_intron	1280	1585	+	asmbl_40850	none	STRG.30247.3,blat.proc3829885.chain_3279	2	STRG.30247.1,blat.proc3829885.chain_3278	2
scaffold_12	alt_donor	14041166	14041167	+	asmbl_9011	none	Trinity_GG_8373_c0_g1_i1,blat.proc3829877.chain_3649	2	STRG.15215.1,STRG.15215.2,Trinity_GG_8373_c0_g1_i2,blat.proc3829877.chain_3650	4
scaffold_6	starts_in_intron	13190506	13190506	+	asmbl_47425,asmbl_47426	none	blat.proc3829875.chain_429,blat.proc3829875.chain_431	2	STRG.8068.1,STRG.8068.2,STRG.8068.3,blat.proc3829875.chain_427,blat.proc3829875.chain_428,blat.proc3829875.chain_430,blat.proc3829875.chain_432	7
scaffold_20	spliced_intron	7899285	7899371	-	asmbl_26864	none	STRG.23328.2,Trinity_GG_30006_c1_g1_i1,blat.proc3829899.chain_316	3	STRG.23328.1,Trinity_GG_30006_c1_g1_i2,blat.proc3829899.chain_317	3
scaffold_15	alt_acceptor	12870897	12870898	-	asmbl_15625	none	STRG.18726.2	1	STRG.18726.1,Trinity_GG_27526_c0_g1_i1,blat.proc3829895.chain_3490	3
scaffold_22	retained_intron	7896054	7896156	-	asmbl_30205	none	blat.proc3829899.chain_2225	1	STRG.25124.1,STRG.25124.2,blat.proc3829899.chain_2228	3
scaffold_6	ends_in_intron	13984728	13984728	-	asmbl_48912	none	blat.proc3829891.chain_459	1	STRG.8147.1,blat.proc3829891.chain_452,blat.proc3829891.chain_453,blat.proc3829891.chain_458	4
scaffold_3	ends_in_intron	3250670	3250670	+	asmbl_39895	none	STRG.3087.7	1	STRG.3087.6	1
scaffold_15	spliced_intron	15857572	15857984	+	asmbl_14773,asmbl_14774,asmbl_14775,asmbl_14776,asmbl_14777,asmbl_14781	none	STRG.18964.1,STRG.18964.3,STRG.18964.4,STRG.18964.5,STRG.18964.6,Trinity_GG_10383_c0_g1_i3,Trinity_GG_10383_c0_g1_i7,blat.proc3829879.chain_3538,blat.proc3829879.chain_3539,blat.proc3829879.chain_3540,blat.proc3829879.chain_3542	11	Trinity_GG_10383_c0_g1_i2,blat.proc3829879.chain_3541,blat.proc3829879.chain_3545	3
scaffold_17	ends_in_intron	12063159	12063159	-	asmbl_19359	none	STRG.20722.2,Trinity_GG_28668_c0_g1_i2,blat.proc3829897.chain_1674,blat.proc3829897.chain_1675	4	STRG.20722.1,Trinity_GG_28668_c0_g1_i3,blat.proc3829897.chain_1673	3
scaffold_18	starts_in_intron	5785308	5785308	+	asmbl_20639	none	blat.proc3829881.chain_2252	1	STRG.21318.1,STRG.21318.2,blat.proc3829881.chain_2250,blat.proc3829881.chain_2253,blat.proc3829881.chain_2255	5
scaffold_23	starts_in_intron	4100309	4100309	-	asmbl_31548	none	STRG.25802.3,blat.proc3829899.chain_2937	2	Trinity_GG_31457_c0_g1_i5,blat.proc3829899.chain_2934,blat.proc3829899.chain_2935,blat.proc3829899.chain_2936	4
scaffold_1	alt_donor	11269937	11269938	+	asmbl_2081	none	STRG.744.2	1	STRG.744.1,Trinity_GG_459_c0_g1_i1,blat.proc3829871.chain_794	3
scaffold_11	starts_in_intron	6254551	6254551	+	asmbl_5582	none	STRG.13670.4,Trinity_GG_7547_c0_g1_i6,blat.proc3829877.chain_2178	3	STRG.13670.1,STRG.13670.2,Trinity_GG_7547_c0_g1_i2,Trinity_GG_7547_c0_g1_i9,blat.proc3829877.chain_2179,blat.proc3829877.chain_2180,blat.proc3829877.chain_2181,blat.proc3829877.chain_2183	8
scaffold_7	spliced_intron	5915073	5915159	-	asmbl_49711,asmbl_49713,asmbl_49714,asmbl_49715,asmbl_49717,asmbl_49718	none	STRG.8887.1,STRG.8887.2,STRG.8887.3,STRG.8887.5,blat.proc3829891.chain_1163,blat.proc3829891.chain_1164,blat.proc3829891.chain_1165,blat.proc3829891.chain_1167,blat.proc3829891.chain_1168	9	STRG.8887.4,Trinity_GG_22041_c0_g1_i8,blat.proc3829891.chain_1169	3
scaffold_11	ends_in_intron	15660044	15660044	-	asmbl_7180	none	Trinity_GG_25013_c0_g1_i3,blat.proc3829893.chain_2734	2	STRG.14297.1,STRG.14297.2,blat.proc3829893.chain_2729,blat.proc3829893.chain_2730,blat.proc3829893.chain_2731,blat.proc3829893.chain_2732,blat.proc3829893.chain_2736,blat.proc3829893.chain_2737	8
scaffold_2	retained_exon	2883733	2883825	-	asmbl_22966	none	STRG.1733.4	1	STRG.1733.1,STRG.1733.2,STRG.1733.3,blat.proc3829887.chain_1492,blat.proc3829887.chain_1493,blat.proc3829887.chain_1494,blat.proc3829887.chain_1495,blat.proc3829887.chain_1497,blat.proc3829887.chain_1498,blat.proc3829887.chain_1500	10
scaffold_25	alternate_exon	3172559	3172595	-	asmbl_34096	none	STRG.27236.2,Trinity_GG_32274_c0_g1_i3,blat.proc3829901.chain_564	3	STRG.27236.1,Trinity_GG_32274_c0_g1_i1,blat.proc3829901.chain_562	3
scaffold_1	alt_donor	102815	102816	+	asmbl_1391	none	STRG.11.1,Trinity_GG_23_c0_g1_i2,blat.proc3829871.chain_42	3	Trinity_GG_23_c0_g1_i3,Trinity_GG_23_c0_g1_i7,blat.proc3829871.chain_40,blat.proc3829871.chain_41	4
scaffold_5	retained_intron	16648366	16648547	+	asmbl_44777	none	Trinity_GG_3703_c0_g1_i2,blat.proc3829873.chain_2910	2	STRG.6846.1,STRG.6846.2,STRG.6846.3,blat.proc3829873.chain_2906,blat.proc3829873.chain_2908	5
scaffold_5	retained_intron	13162731	13162841	+	asmbl_44530	none	STRG.6542.2	1	STRG.6542.1	1
scaffold_3	skipped_exon	14668755	14671274	+	asmbl_40504	none	STRG.3808.1,Trinity_GG_2137_c0_g1_i3,blat.proc3829873.chain_212	3	STRG.3808.2,STRG.3808.3,Trinity_GG_2137_c0_g1_i1,blat.proc3829873.chain_211	4
scaffold_16	spliced_intron	7702281	7702690	-	asmbl_16369,asmbl_16370	none	STRG.19406.1,blat.proc3829897.chain_365,blat.proc3829897.chain_367	3	blat.proc3829897.chain_366	1
scaffold_14	starts_in_intron	6902354	6902354	+	asmbl_12093	none	blat.proc3829879.chain_1883	1	STRG.17115.1,STRG.17115.2,blat.proc3829879.chain_1881,blat.proc3829879.chain_1882	4
scaffold_6	spliced_intron	300061	300175	+	asmbl_46600,asmbl_46603,asmbl_46604	none	STRG.7082.1,STRG.7082.2,STRG.7082.4	3	STRG.7082.3	1
scaffold_6	spliced_intron	7849457	7849655	+	asmbl_47023	none	STRG.7662.1	1	STRG.7662.5	1
scaffold_21	starts_in_intron	473231	473231	+	asmbl_28288	none	Trinity_GG_13157_c0_g1_i4,blat.proc3829883.chain_899	2	STRG.23729.1,Trinity_GG_13157_c0_g1_i1,blat.proc3829883.chain_898,blat.proc3829883.chain_900,blat.proc3829883.chain_901	5
scaffold_19	retained_intron	7586777	7586903	-	asmbl_21453	none	STRG.22232.2	1	STRG.22232.1,blat.proc3829897.chain_2932	2
scaffold_12	alternate_exon	7591248	7591701	-	asmbl_7728	none	Trinity_GG_25280_c0_g1_i2,blat.proc3829893.chain_3221	2	STRG.14825.1,blat.proc3829893.chain_3222	2
scaffold_16	starts_in_intron	4077828	4077828	+	asmbl_16954	none	STRG.19212.3,Trinity_GG_10492_c0_g1_i3,blat.proc3829879.chain_3749	3	STRG.19212.1,STRG.19212.2,blat.proc3829881.chain_2,blat.proc3829881.chain_3	4
scaffold_20	retained_exon	12114358	12114429	+	asmbl_26265,asmbl_26266,asmbl_26267	none	STRG.23696.1,Trinity_GG_13119_c0_g1_i1,Trinity_GG_13119_c0_g1_i3,blat.proc3829883.chain_832,blat.proc3829883.chain_834,blat.proc3829883.chain_835	6	blat.proc3829883.chain_833	1
scaffold_23	ends_in_intron	10209522	10209522	+	asmbl_31134,asmbl_31136	none	blat.proc3829883.chain_3156,blat.proc3829883.chain_3159	2	STRG.26209.1,STRG.26209.2,STRG.26209.3,blat.proc3829883.chain_3155,blat.proc3829883.chain_3157,blat.proc3829883.chain_3158	6
scaffold_7	retained_intron	4047076	4047197	-	asmbl_49662	none	blat.proc3829891.chain_1134	1	STRG.8793.3,blat.proc3829891.chain_1137	2
scaffold_20	starts_in_intron	4481855	4481855	-	asmbl_26656,asmbl_26658	none	STRG.23113.2,blat.proc3829899.chain_60	2	STRG.23113.1,blat.proc3829899.chain_58,blat.proc3829899.chain_59	3
scaffold_1	starts_in_intron	6833275	6833275	-	asmbl_399	none	blat.proc3829887.chain_363	1	STRG.468.1,blat.proc3829887.chain_362	2
scaffold_2	retained_intron	14203673	14203696	-	asmbl_23591,asmbl_23593	none	STRG.2411.3,blat.proc3829887.chain_2301	2	blat.proc3829887.chain_2299	1
scaffold_24	retained_exon	4318956	4319024	+	asmbl_32201	none	STRG.26578.3	1	STRG.26578.2	1
scaffold_10	retained_intron	1980607	1981557	-	asmbl_3006	none	STRG.12045.1,blat.proc3829893.chain_509	2	STRG.12045.2,blat.proc3829893.chain_508	2
scaffold_7	retained_intron	13204822	13204912	+	asmbl_51194,asmbl_51196	none	Trinity_GG_5219_c0_g1_i8,blat.proc3829875.chain_1851,blat.proc3829875.chain_1854	3	STRG.9419.1,STRG.9419.2,STRG.9419.3,blat.proc3829875.chain_1853,blat.proc3829875.chain_1856	5
scaffold_10	starts_in_intron	5860141	5860141	-	asmbl_3314	none	STRG.12401.1	1	STRG.12401.2,STRG.12401.3	2
scaffold_10	retained_intron	5866632	5866731	-	asmbl_3321	none	STRG.12398.1	1	STRG.12398.2,Trinity_GG_23931_c0_g1_i2,blat.proc3829893.chain_854	3
scaffold_16	retained_intron	14553177	14553355	+	asmbl_17490,asmbl_17492	none	STRG.19828.3,Trinity_GG_10868_c0_g1_i3,blat.proc3829881.chain_689	3	STRG.19828.1,STRG.19828.2,Trinity_GG_10868_c0_g1_i1,Trinity_GG_10868_c0_g1_i2,Trinity_GG_10868_c0_g1_i4,blat.proc3829881.chain_687,blat.proc3829881.chain_688,blat.proc3829881.chain_690	8
scaffold_18	starts_in_intron	5814617	5814617	+	asmbl_20644	none	Trinity_GG_11762_c1_g2_i1,blat.proc3829881.chain_2273	2	STRG.21326.1,blat.proc3829881.chain_2272	2
scaffold_8	starts_in_intron	5686220	5686220	+	asmbl_51877	none	Trinity_GG_5490_c0_g1_i1,blat.proc3829875.chain_2350	2	STRG.9971.1	1
scaffold_6	retained_intron	7849457	7849655	+	asmbl_47021	none	STRG.7662.5	1	STRG.7662.1	1
scaffold_15	starts_in_intron	8933238	8933238	+	asmbl_14311	none	Trinity_GG_10119_c0_g1_i2,blat.proc3829879.chain_3058	2	STRG.18428.1,blat.proc3829879.chain_3059	2
scaffold_21	ends_in_intron	6512839	6512839	+	asmbl_28679	none	blat.proc3829883.chain_1335	1	STRG.24161.1,blat.proc3829883.chain_1336	2
scaffold_7	spliced_intron	18127677	18127784	+	asmbl_51400	none	blat.proc3829875.chain_2070	1	blat.proc3829875.chain_2071	1
scaffold_3	alt_acceptor	4904506	4904507	+	asmbl_40000	none	STRG.3180.2,blat.proc3829871.chain_3388	2	STRG.3180.1,blat.proc3829871.chain_3389	2
scaffold_22	alt_acceptor	10984457	10984458	-	asmbl_30408	none	Trinity_GG_31214_c0_g1_i1,blat.proc3829899.chain_2489	2	STRG.25414.2,STRG.25414.4,Trinity_GG_31214_c0_g1_i2,Trinity_GG_31214_c0_g1_i4,blat.proc3829899.chain_2490,blat.proc3829899.chain_2491	6
scaffold_3	alt_acceptor	7722252	7722253	-	asmbl_38937	none	STRG.3357.1	1	STRG.3357.2,blat.proc3829887.chain_3159	2
scaffold_18	alternate_exon	7866090	7866182	-	asmbl_20020	none	blat.proc3829897.chain_2329	1	STRG.21476.1,blat.proc3829897.chain_2330,blat.proc3829897.chain_2331	3
scaffold_2	alt_acceptor	7469617	7469618	-	asmbl_23284	none	Trinity_GG_18127_c0_g1_i23,Trinity_GG_18127_c0_g1_i8,blat.proc3829887.chain_1889,blat.proc3829887.chain_1895	4	STRG.2075.3,STRG.2075.4,Trinity_GG_18127_c0_g1_i18,blat.proc3829887.chain_1893	4
scaffold_28	spliced_intron	8481657	8481677	+	asmbl_38448	none	STRG.29903.2	1	STRG.29903.1,blat.proc3829885.chain_3006	2
scaffold_14	alt_donor	14248493	14248494	+	asmbl_12517	none	STRG.17670.2	1	STRG.17670.1	1
scaffold_1	spliced_intron	7773078	7773240	+	asmbl_1912,asmbl_1913	none	blat.proc3829871.chain_603,blat.proc3829871.chain_604	2	STRG.537.2,blat.proc3829871.chain_602	2
scaffold_21	spliced_intron	1861553	1861668	-	asmbl_27450	none	STRG.23813.1,blat.proc3829899.chain_879	2	blat.proc3829899.chain_878	1
scaffold_19	starts_in_intron	12816566	12816566	-	asmbl_21763	none	blat.proc3829897.chain_3273	1	Trinity_GG_29568_c0_g1_i15,blat.proc3829897.chain_3276	2
scaffold_16	alt_donor	14084594	14084595	-	asmbl_16609	none	blat.proc3829897.chain_695	1	STRG.19792.1	1
scaffold_16	spliced_intron	14552847	14553116	+	asmbl_17488,asmbl_17489,asmbl_17492	none	STRG.19828.1,STRG.19828.2,STRG.19828.3,Trinity_GG_10868_c0_g1_i1,Trinity_GG_10868_c0_g1_i2,blat.proc3829881.chain_687,blat.proc3829881.chain_690	7	Trinity_GG_10868_c0_g1_i3,Trinity_GG_10868_c0_g1_i4,blat.proc3829881.chain_688,blat.proc3829881.chain_689	4
scaffold_27	alternate_exon	3054645	3054745	+	asmbl_36140,asmbl_36142	none	STRG.28771.1,blat.proc3829885.chain_1852	2	STRG.28771.2,blat.proc3829885.chain_1851	2
scaffold_12	ends_in_intron	16247557	16247557	+	asmbl_9119,asmbl_9120	none	Trinity_GG_8439_c0_g1_i1,Trinity_GG_8439_c0_g1_i2,blat.proc3829879.chain_16,blat.proc3829879.chain_17	4	STRG.15363.1,STRG.15363.2,STRG.15363.3,Trinity_GG_8439_c0_g1_i3,blat.proc3829879.chain_15	5
scaffold_2	retained_intron	8787993	8788059	-	asmbl_23354	none	STRG.2128.1,Trinity_GG_18201_c0_g1_i3,blat.proc3829887.chain_2028,blat.proc3829887.chain_2029	4	STRG.2128.2,blat.proc3829887.chain_2031	2
scaffold_10	starts_in_intron	17357555	17357555	-	asmbl_3958	none	blat.proc3829893.chain_1664	1	STRG.13177.1,blat.proc3829893.chain_1665	2
scaffold_3	spliced_intron	13800170	13800928	-	asmbl_39252,asmbl_39253,asmbl_39255	none	STRG.3721.1,STRG.3721.2,Trinity_GG_19038_c0_g1_i4,blat.proc3829887.chain_3468,blat.proc3829887.chain_3469	5	Trinity_GG_19038_c0_g1_i1,blat.proc3829887.chain_3467	2
scaffold_9	skipped_exon	3374363	3374990	+	asmbl_53872,asmbl_53873	none	STRG.10936.1,blat.proc3829875.chain_3399,blat.proc3829875.chain_3401	3	blat.proc3829875.chain_3400,blat.proc3829875.chain_3402	2
scaffold_18	alt_acceptor	8155754	8155755	-	asmbl_20032	none	STRG.21495.1,blat.proc3829897.chain_2340	2	STRG.21495.2,blat.proc3829897.chain_2339	2
scaffold_8	ends_in_intron	17282654	17282654	-	asmbl_53450	none	Trinity_GG_22912_c3_g1_i1,blat.proc3829891.chain_2768	2	STRG.10643.1,blat.proc3829891.chain_2763,blat.proc3829891.chain_2764	3
scaffold_1	alternate_exon	14075812	14076046	+	asmbl_2312	none	STRG.999.1,Trinity_GG_614_c0_g1_i3,blat.proc3829871.chain_1100	3	STRG.999.2,blat.proc3829871.chain_1101,blat.proc3829871.chain_1103	3
scaffold_3	spliced_intron	19887827	19887892	-	asmbl_39623	none	STRG.4102.3	1	STRG.4102.2,Trinity_GG_19279_c1_g1_i1,blat.proc3829889.chain_172	3
scaffold_566	retained_intron	3943	4024	+	asmbl_46536	none	Trinity_GG_16802_c0_g1_i7,blat.proc3829879.chain_708,blat.proc3829885.chain_3387	3	blat.proc3829879.chain_709	1
scaffold_1	retained_intron	6324338	6324422	+	asmbl_1819	none	blat.proc3829871.chain_477	1	STRG.426.1,blat.proc3829871.chain_478,blat.proc3829871.chain_479	3
scaffold_12	retained_intron	12307824	12309134	+	asmbl_8949	none	STRG.15117.3,blat.proc3829877.chain_3595	2	STRG.15117.1,STRG.15117.2,blat.proc3829877.chain_3596	3
scaffold_25	ends_in_intron	9050569	9050569	+	asmbl_33766	none	blat.proc3829885.chain_738	1	STRG.27697.1,blat.proc3829885.chain_736,blat.proc3829885.chain_737	3
scaffold_3	alternate_exon	3252532	3265765	+	asmbl_39897,asmbl_39899	none	STRG.3087.1,STRG.3087.6	2	STRG.3087.4,STRG.3087.5	2
scaffold_7	ends_in_intron	1232673	1232673	+	asmbl_50481	none	blat.proc3829875.chain_1041	1	STRG.8627.7	1
scaffold_4	retained_intron	3237335	3238369	-	asmbl_41163	none	Trinity_GG_19386_c0_g1_i6,blat.proc3829889.chain_369	2	STRG.4247.4	1
scaffold_13	alt_donor	87817	87818	+	asmbl_10428	none	STRG.15412.3	1	STRG.15412.2	1
scaffold_8	ends_in_intron	17557143	17557143	+	asmbl_52482	none	Trinity_GG_5883_c0_g1_i1,blat.proc3829875.chain_3083	2	STRG.10667.1,blat.proc3829875.chain_3084	2
scaffold_19	starts_in_intron	10222252	10222252	+	asmbl_22432	none	STRG.22389.4,blat.proc3829881.chain_3315	2	STRG.22389.2,STRG.22389.3	2
scaffold_3	alt_acceptor	14496048	14496049	-	asmbl_39326,asmbl_39331	none	STRG.3788.1,Trinity_GG_19109_c0_g1_i2,blat.proc3829887.chain_3590	3	Trinity_GG_19109_c0_g1_i1,blat.proc3829887.chain_3589	2
scaffold_4	starts_in_intron	14685249	14685249	-	asmbl_41828	none	STRG.5102.1,blat.proc3829889.chain_1085	2	STRG.5102.2	1
scaffold_21	retained_exon	10251262	10251308	-	asmbl_28039	none	STRG.24471.1,Trinity_GG_30668_c0_g1_i2,blat.proc3829899.chain_1576	3	Trinity_GG_30668_c0_g1_i1,blat.proc3829899.chain_1577	2
scaffold_21	alternate_exon	6512972	6513186	+	asmbl_28680	none	blat.proc3829883.chain_1337	1	blat.proc3829883.chain_1335	1
scaffold_28	ends_in_intron	2810076	2810076	-	asmbl_37415	none	Trinity_GG_33471_c2_g1_i1	1	STRG.29459.1,blat.proc3829901.chain_2491,blat.proc3829901.chain_2492,blat.proc3829901.chain_2493,blat.proc3829901.chain_2494,blat.proc3829901.chain_2495,blat.proc3829901.chain_2496,blat.proc3829901.chain_2497	8
scaffold_14	starts_in_intron	9191148	9191148	+	asmbl_12255	none	blat.proc3829879.chain_2038	1	STRG.17305.1,blat.proc3829879.chain_2040	2
scaffold_23	alt_acceptor	360406	360407	-	asmbl_31310,asmbl_31311,asmbl_31312,asmbl_31314,asmbl_31315,asmbl_31317,asmbl_31318,asmbl_31319,asmbl_31320	none	STRG.25543.1,STRG.25543.3,STRG.25543.4,Trinity_GG_31299_c0_g1_i4,blat.proc3829899.chain_2649,blat.proc3829899.chain_2650,blat.proc3829899.chain_2652,blat.proc3829899.chain_2653,blat.proc3829899.chain_2654,blat.proc3829899.chain_2655,blat.proc3829899.chain_2656	11	STRG.25543.5	1
scaffold_3	starts_in_intron	3715844	3715844	+	asmbl_39919	none	blat.proc3829871.chain_3239	1	STRG.3089.1,blat.proc3829871.chain_3240	2
scaffold_14	retained_intron	3243702	3243805	+	asmbl_11905,asmbl_11906,asmbl_11909	none	Trinity_GG_9263_c0_g1_i1,Trinity_GG_9263_c0_g1_i8,blat.proc3829879.chain_1552,blat.proc3829879.chain_1554,blat.proc3829879.chain_1555	5	STRG.16901.1,STRG.16901.2,blat.proc3829879.chain_1549,blat.proc3829879.chain_1551,blat.proc3829879.chain_1553	5
scaffold_11	alt_donor	4686715	4686716	-	asmbl_6585,asmbl_6586,asmbl_6588	none	STRG.13547.1,STRG.13547.2,STRG.13547.3,blat.proc3829893.chain_2029,blat.proc3829893.chain_2031	5	STRG.13547.5,blat.proc3829893.chain_2032	2
scaffold_4	retained_exon	14982184	14982314	+	asmbl_43252	none	STRG.5108.1,blat.proc3829873.chain_1439	2	STRG.5108.3,blat.proc3829873.chain_1437	2
scaffold_4	spliced_intron	3383834	3383996	+	asmbl_42515	none	STRG.4269.1,blat.proc3829873.chain_586	2	blat.proc3829873.chain_588	1
scaffold_15	alternate_exon	6960094	6960240	+	asmbl_14214	none	blat.proc3829879.chain_2933	1	STRG.18295.1,STRG.18295.2	2
scaffold_20	alt_acceptor	4478057	4478058	-	asmbl_26655,asmbl_26660	none	STRG.23113.1,blat.proc3829899.chain_56,blat.proc3829899.chain_59	3	STRG.23113.2,STRG.23113.3,blat.proc3829899.chain_55,blat.proc3829899.chain_58	4
scaffold_27	alt_donor	6071501	6071502	+	asmbl_36324,asmbl_36326	none	STRG.28987.1,STRG.28987.3,blat.proc3829885.chain_2113	3	STRG.28987.2,blat.proc3829885.chain_2112	2
scaffold_2	starts_in_intron	182547	182547	+	asmbl_24102	none	Trinity_GG_876_c0_g1_i2,blat.proc3829871.chain_1579	2	STRG.1515.1,blat.proc3829871.chain_1578	2
scaffold_24	alt_donor	10485848	10485849	+	asmbl_32571,asmbl_32577	none	STRG.27000.1,Trinity_GG_14920_c0_g1_i4,Trinity_GG_14920_c0_g1_i5,blat.proc3829885.chain_126,blat.proc3829885.chain_129	5	STRG.27000.2,STRG.27000.3,STRG.27000.4,STRG.27000.5,Trinity_GG_14920_c0_g1_i2,Trinity_GG_14920_c0_g1_i6,Trinity_GG_14920_c0_g1_i7,blat.proc3829885.chain_127,blat.proc3829885.chain_128,blat.proc3829885.chain_130	10
scaffold_1	alternate_exon	3605673	3605719	+	asmbl_1610	none	STRG.220.1,blat.proc3829871.chain_220	2	STRG.220.2,Trinity_GG_129_c0_g1_i2,blat.proc3829871.chain_219	3
scaffold_26	retained_intron	9772322	9772904	+	asmbl_35777,asmbl_35778,asmbl_35780,asmbl_35781	none	STRG.28501.2,STRG.28501.3,STRG.28501.4,STRG.28501.9,Trinity_GG_15718_c0_g2_i1,blat.proc3829885.chain_1433,blat.proc3829885.chain_1436,blat.proc3829885.chain_1438	8	STRG.28501.1,STRG.28501.6,blat.proc3829885.chain_1432,blat.proc3829885.chain_1437	4
scaffold_19	spliced_intron	13637265	13638466	-	asmbl_21889	none	STRG.22671.1	1	STRG.22671.2,Trinity_GG_29644_c0_g1_i1,blat.proc3829897.chain_3449,blat.proc3829897.chain_3450	4
scaffold_17	retained_exon	11035476	11035526	-	asmbl_19314	none	STRG.20653.4	1	STRG.20653.1	1
scaffold_4	spliced_intron	13723093	13723242	-	asmbl_41747	none	blat.proc3829889.chain_1046	1	STRG.4993.1,blat.proc3829889.chain_1045	2
scaffold_8	starts_in_intron	4240411	4240411	-	asmbl_52759,asmbl_52762	none	STRG.9900.1,blat.proc3829891.chain_1987	2	STRG.9900.2,blat.proc3829891.chain_1988,blat.proc3829891.chain_1990	3
scaffold_7	skipped_exon	4498642	4501601	-	asmbl_49677	none	STRG.8813.2,blat.proc3829891.chain_1190	2	STRG.8813.1,Trinity_GG_22050_c0_g1_i4,blat.proc3829891.chain_1193	3
scaffold_4	alt_donor	16639111	16639112	+	asmbl_43323	none	STRG.5243.1	1	STRG.5243.2	1
scaffold_26	alternate_exon	2962554	2962975	-	asmbl_34739	none	STRG.27973.5	1	STRG.27973.2,STRG.27973.4,blat.proc3829901.chain_1233	3
scaffold_10	ends_in_intron	336945	336945	-	asmbl_2854,asmbl_2855	none	STRG.11909.4,Trinity_GG_23632_c0_g1_i4,blat.proc3829893.chain_343	3	STRG.11909.1,STRG.11909.2,STRG.11909.3,blat.proc3829893.chain_340,blat.proc3829893.chain_341,blat.proc3829893.chain_342	6
scaffold_22	alt_donor	10044902	10044903	-	asmbl_30349	none	STRG.25340.4	1	STRG.25340.1,STRG.25340.2	2
scaffold_27	alt_donor	4457658	4457659	-	asmbl_36908	none	STRG.28878.2,blat.proc3829901.chain_2019	2	STRG.28878.1,blat.proc3829901.chain_2020	2
scaffold_14	ends_in_intron	15324644	15324644	-	asmbl_13693	none	Trinity_GG_26987_c0_g1_i1,blat.proc3829895.chain_2476	2	STRG.17748.1,blat.proc3829895.chain_2475	2
scaffold_5	skipped_exon	17224836	17226346	+	asmbl_44812	none	STRG.6887.1,blat.proc3829873.chain_3033	2	STRG.6887.2,blat.proc3829873.chain_3030	2
scaffold_10	spliced_intron	5535601	5535697	-	asmbl_3287	none	blat.proc3829893.chain_807	1	Trinity_GG_23905_c0_g1_i2,blat.proc3829893.chain_808	2
scaffold_6	starts_in_intron	7939558	7939558	-	asmbl_48449	none	blat.proc3829889.chain_3705	1	STRG.7666.1,STRG.7666.2,STRG.7666.3,STRG.7666.4,blat.proc3829889.chain_3701,blat.proc3829889.chain_3702,blat.proc3829889.chain_3703,blat.proc3829889.chain_3704,blat.proc3829889.chain_3706	9
scaffold_8	spliced_intron	17284211	17284287	-	asmbl_53447	none	STRG.10643.1,blat.proc3829891.chain_2763	2	blat.proc3829891.chain_2764	1
scaffold_5	alternate_exon	10307779	10307841	+	asmbl_44341	none	blat.proc3829873.chain_2476	1	STRG.6320.1,blat.proc3829873.chain_2475	2
scaffold_25	retained_exon	7803319	7803458	-	asmbl_34378,asmbl_34379	none	STRG.27583.1,blat.proc3829901.chain_897,blat.proc3829901.chain_898	3	blat.proc3829901.chain_899	1
scaffold_5	retained_intron	15504736	15505054	-	asmbl_46062,asmbl_46063	none	STRG.6731.1,STRG.6731.3,blat.proc3829889.chain_2802,blat.proc3829889.chain_2803	4	STRG.6731.2	1
scaffold_10	retained_intron	4149920	4150006	-	asmbl_3179	none	STRG.12246.1,Trinity_GG_23850_c1_g1_i1,blat.proc3829893.chain_716	3	STRG.12246.2	1
scaffold_8	spliced_intron	2690400	2690454	+	asmbl_51725	none	STRG.9799.3	1	blat.proc3829875.chain_2211	1
scaffold_11	alt_acceptor	9285062	9285063	+	asmbl_5844,asmbl_5845	none	STRG.13960.2,Trinity_GG_7705_c0_g1_i1,Trinity_GG_7705_c0_g1_i3,blat.proc3829877.chain_2463,blat.proc3829877.chain_2464	5	STRG.13960.1	1
scaffold_11	spliced_intron	13462527	13462704	-	asmbl_7107,asmbl_7108	none	STRG.14196.1,STRG.14196.2,Trinity_GG_24953_c0_g1_i2,Trinity_GG_24953_c0_g1_i4,blat.proc3829893.chain_2631,blat.proc3829893.chain_2633	6	Trinity_GG_24953_c0_g1_i1,blat.proc3829893.chain_2634	2
scaffold_6	alternate_exon	13918620	13918810	-	asmbl_48893	none	STRG.8132.6	1	STRG.8132.1,STRG.8132.2,STRG.8132.3,blat.proc3829891.chain_438,blat.proc3829891.chain_439,blat.proc3829891.chain_440	6
scaffold_4	ends_in_intron	16874362	16874362	-	asmbl_41982	none	Trinity_GG_19940_c0_g1_i2	1	STRG.5279.1,STRG.5279.2,blat.proc3829889.chain_1280,blat.proc3829889.chain_1282	4
scaffold_26	spliced_intron	10119226	10119413	-	asmbl_35086,asmbl_35090,asmbl_35091,asmbl_35092,asmbl_35093	none	STRG.28511.1,STRG.28511.2,Trinity_GG_32936_c0_g1_i13,Trinity_GG_32936_c0_g1_i3,Trinity_GG_32936_c0_g1_i5,Trinity_GG_32936_c0_g1_i8,blat.proc3829901.chain_1632,blat.proc3829901.chain_1633,blat.proc3829901.chain_1635,blat.proc3829901.chain_1636	10	STRG.28511.3	1
scaffold_1	starts_in_intron	12339195	12339195	-	asmbl_714,asmbl_721	none	blat.proc3829887.chain_738,blat.proc3829887.chain_746	2	STRG.843.1,STRG.843.2,blat.proc3829887.chain_734,blat.proc3829887.chain_735,blat.proc3829887.chain_736,blat.proc3829887.chain_737,blat.proc3829887.chain_739,blat.proc3829887.chain_741,blat.proc3829887.chain_742,blat.proc3829887.chain_743,blat.proc3829887.chain_745	11
scaffold_19	alt_acceptor	5137303	5137304	+	asmbl_22152	none	STRG.22067.2,blat.proc3829881.chain_2986	2	STRG.22067.1,blat.proc3829881.chain_2987	2
scaffold_25	alt_donor	5153856	5153857	-	asmbl_34222	none	STRG.27418.2,Trinity_GG_32376_c0_g1_i1,blat.proc3829901.chain_728	3	STRG.27418.1,Trinity_GG_32376_c0_g1_i2,blat.proc3829901.chain_729	3
scaffold_18	starts_in_intron	2000972	2000972	-	asmbl_19725	none	blat.proc3829897.chain_1986	1	STRG.21099.1,STRG.21099.2,blat.proc3829897.chain_1987	3
scaffold_13	ends_in_intron	5710686	5710686	-	asmbl_9672	none	STRG.15859.3	1	STRG.15859.1,STRG.15859.2,blat.proc3829895.chain_595,blat.proc3829895.chain_596,blat.proc3829895.chain_597,blat.proc3829895.chain_599	6
scaffold_9	starts_in_intron	6923770	6923770	-	asmbl_55069	none	blat.proc3829891.chain_3352	1	STRG.11195.2,blat.proc3829891.chain_3351	2
scaffold_15	ends_in_intron	15443231	15443231	+	asmbl_14745	none	blat.proc3829879.chain_3559	1	Trinity_GG_10389_c0_g1_i2,Trinity_GG_10389_c0_g1_i7,blat.proc3829879.chain_3560,blat.proc3829879.chain_3565	4
scaffold_4	alt_acceptor	3279223	3279224	+	asmbl_42494	none	Trinity_GG_2364_c0_g1_i1,blat.proc3829873.chain_599	2	STRG.4254.1,Trinity_GG_2364_c0_g1_i3,blat.proc3829873.chain_601	3
scaffold_8	spliced_intron	18249988	18250262	-	asmbl_53538,asmbl_53539,asmbl_53542	none	STRG.10723.1,blat.proc3829891.chain_2924,blat.proc3829891.chain_2925	3	STRG.10723.2,STRG.10723.5,blat.proc3829891.chain_2919,blat.proc3829891.chain_2922	4
scaffold_5	ends_in_intron	15553604	15553604	-	asmbl_46083	none	Trinity_GG_20769_c0_g1_i1,blat.proc3829889.chain_2748	2	STRG.6736.1,blat.proc3829889.chain_2747	2
scaffold_20	alt_donor	11924753	11924754	+	asmbl_26256	none	STRG.23680.4	1	STRG.23680.2,blat.proc3829883.chain_818	2
scaffold_7	retained_intron	12428916	12429023	-	asmbl_50033	none	Trinity_GG_22273_c0_g1_i4,blat.proc3829891.chain_1585	2	STRG.9329.1,blat.proc3829891.chain_1584,blat.proc3829891.chain_1587	3
scaffold_11	retained_exon	4860785	4860893	+	asmbl_5490	none	STRG.13572.2,Trinity_GG_7459_c1_g1_i1,blat.proc3829877.chain_2049	3	STRG.13572.1	1
scaffold_4	alternate_exon	18324753	18324809	-	asmbl_42110	none	STRG.5434.1,blat.proc3829889.chain_1451	2	STRG.5434.2	1
scaffold_17	alt_donor	6214502	6214503	+	asmbl_17972	none	STRG.20291.2	1	STRG.20291.1,Trinity_GG_11080_c0_g1_i2,blat.proc3829881.chain_1032	3
scaffold_6	alternate_exon	3806087	3806711	+	asmbl_46809	none	Trinity_GG_4055_c0_g1_i12,blat.proc3829873.chain_3525	2	STRG.7379.2,STRG.7379.4,STRG.7379.5	3
scaffold_14	alt_donor	8399335	8399336	-	asmbl_13284,asmbl_13285	none	STRG.17262.2,STRG.17262.3,blat.proc3829895.chain_1981,blat.proc3829895.chain_1982	4	STRG.17262.1,blat.proc3829895.chain_1979	2
scaffold_16	alternate_exon	14614441	14614521	-	asmbl_16661,asmbl_16664	none	STRG.19837.2,Trinity_GG_28149_c0_g1_i2,blat.proc3829897.chain_799	3	STRG.19837.1,Trinity_GG_28149_c0_g1_i1,Trinity_GG_28149_c0_g1_i3,blat.proc3829897.chain_800,blat.proc3829897.chain_801	5
scaffold_11	retained_exon	7048932	7049050	+	asmbl_5610,asmbl_5613,asmbl_5615	none	STRG.13722.1,Trinity_GG_7553_c0_g1_i3,Trinity_GG_7553_c0_g1_i7,blat.proc3829877.chain_2194,blat.proc3829877.chain_2196	5	STRG.13722.2	1
scaffold_6	alt_acceptor	3057108	3057109	+	asmbl_46748	none	blat.proc3829873.chain_3441	1	blat.proc3829873.chain_3439	1
scaffold_22	skipped_exon	11476252	11476729	-	asmbl_30449	none	STRG.25475.2	1	STRG.25475.1	1
scaffold_11	ends_in_intron	176712	176712	+	asmbl_5226	none	blat.proc3829877.chain_1768	1	STRG.13233.1,blat.proc3829877.chain_1766,blat.proc3829877.chain_1767,blat.proc3829877.chain_1769	4
scaffold_1	starts_in_intron	10988640	10988640	+	asmbl_2037	none	Trinity_GG_416_c0_g1_i2,blat.proc3829871.chain_722	2	STRG.716.1,blat.proc3829871.chain_721	2
scaffold_12	spliced_intron	15773119	15773403	-	asmbl_8241	none	STRG.15354.1,blat.proc3829895.chain_83	2	STRG.15354.2,blat.proc3829895.chain_82	2
scaffold_1	alt_donor	18485975	18485976	-	asmbl_1111	none	blat.proc3829887.chain_1212	1	blat.proc3829887.chain_1211	1
scaffold_26	alt_donor	3082282	3082283	+	asmbl_35297	none	STRG.27981.2	1	STRG.27981.1,blat.proc3829885.chain_949	2
scaffold_14	ends_in_intron	3244010	3244010	+	asmbl_11906	none	Trinity_GG_9263_c0_g1_i1,blat.proc3829879.chain_1552	2	STRG.16901.1,STRG.16901.2,Trinity_GG_9263_c0_g1_i8,blat.proc3829879.chain_1549,blat.proc3829879.chain_1551,blat.proc3829879.chain_1553,blat.proc3829879.chain_1554,blat.proc3829879.chain_1555	8
scaffold_7	alternate_exon	4501324	4501706	-	asmbl_49678,asmbl_49679	none	STRG.8813.1,Trinity_GG_22050_c0_g1_i4,blat.proc3829891.chain_1193	3	blat.proc3829891.chain_1191	1
scaffold_22	starts_in_intron	958108	958108	+	asmbl_29201	none	Trinity_GG_13685_c0_g1_i2,blat.proc3829883.chain_1798	2	STRG.24728.1,Trinity_GG_13685_c0_g1_i3,blat.proc3829883.chain_1799	3
scaffold_28	alternate_exon	3848837	3849925	-	asmbl_37503	none	STRG.29564.2	1	STRG.29564.1	1
scaffold_22	alternate_exon	479872	479900	+	asmbl_29147	none	Trinity_GG_13637_c0_g1_i1,blat.proc3829883.chain_1714	2	STRG.24678.1,Trinity_GG_13637_c0_g1_i2,blat.proc3829883.chain_1713	3
scaffold_8	spliced_intron	6018616	6018729	-	asmbl_52848	none	STRG.10005.2,Trinity_GG_22594_c0_g1_i2,blat.proc3829891.chain_2160	3	Trinity_GG_22594_c0_g1_i1,blat.proc3829891.chain_2158	2
scaffold_18	starts_in_intron	1499681	1499681	+	asmbl_20380	none	Trinity_GG_11574_c0_g1_i3,blat.proc3829881.chain_1906	2	STRG.21023.1,Trinity_GG_11574_c0_g1_i2,blat.proc3829881.chain_1905,blat.proc3829881.chain_1907	4
scaffold_14	alt_acceptor	15724877	15724878	-	asmbl_13724,asmbl_13725	none	STRG.17797.2,STRG.17797.3	2	STRG.17797.1,blat.proc3829895.chain_2451	2
scaffold_10	alternate_exon	1176265	1179305	+	asmbl_4197	none	STRG.12000.1,Trinity_GG_6677_c2_g1_i1,Trinity_GG_6677_c3_g1_i1,Trinity_GG_6677_c4_g1_i1,blat.proc3829877.chain_711,blat.proc3829877.chain_714,blat.proc3829877.chain_715,blat.proc3829877.chain_716	8	blat.proc3829877.chain_710	1
scaffold_10	spliced_intron	5866632	5866731	-	asmbl_3320	none	STRG.12398.2,Trinity_GG_23931_c0_g1_i2,blat.proc3829893.chain_854	3	STRG.12398.1	1
scaffold_7	spliced_intron	7534643	7534673	-	asmbl_49763	none	STRG.8996.1	1	Trinity_GG_22104_c0_g1_i1	1
scaffold_5	alternate_exon	17224651	17224835	+	asmbl_44812	none	STRG.6887.1,blat.proc3829873.chain_3033	2	blat.proc3829873.chain_3028	1
scaffold_21	alternate_exon	1678406	1678444	+	asmbl_28375	none	STRG.23806.1	1	STRG.23806.2,STRG.23806.3,Trinity_GG_13200_c0_g1_i1,blat.proc3829883.chain_967	4
scaffold_5	alt_acceptor	9085479	9085480	+	asmbl_44266,asmbl_44268,asmbl_44269	none	STRG.6237.4,STRG.6237.5,blat.proc3829873.chain_2426	3	STRG.6237.1,STRG.6237.3,blat.proc3829873.chain_2419,blat.proc3829873.chain_2423	4
scaffold_26	alternate_exon	9608494	9608596	+	asmbl_35766	none	Trinity_GG_15716_c0_g1_i6,blat.proc3829885.chain_1426	2	STRG.28493.3	1
scaffold_27	alt_acceptor	627301	627302	-	asmbl_36653,asmbl_36657,asmbl_36659	none	STRG.28563.2,STRG.28563.4,Trinity_GG_32986_c0_g1_i1,blat.proc3829901.chain_1749,blat.proc3829901.chain_1753	5	STRG.28563.1,blat.proc3829901.chain_1752	2
scaffold_15	alt_donor	15443734	15443735	+	asmbl_14747	none	STRG.18933.2	1	STRG.18933.1,blat.proc3829879.chain_3564	2
scaffold_20	alt_acceptor	2229976	2229977	-	asmbl_26563	none	STRG.22946.2,blat.proc3829897.chain_3724	2	STRG.22946.1,blat.proc3829897.chain_3725	2
scaffold_5	alternate_exon	18517267	18517343	-	asmbl_46220	none	STRG.6974.3,blat.proc3829889.chain_2931	2	STRG.6974.2,blat.proc3829889.chain_2929	2
scaffold_1	spliced_intron	13059558	13059577	-	asmbl_795	none	STRG.940.2	1	STRG.940.1,blat.proc3829887.chain_832	2
scaffold_3	alternate_exon	8192021	8193012	-	asmbl_38978	none	blat.proc3829887.chain_3145	1	Trinity_GG_18833_c4_g3_i1,blat.proc3829887.chain_3146	2
scaffold_6	spliced_intron	18269773	18269974	+	asmbl_47768	none	STRG.8494.2,blat.proc3829875.chain_916	2	STRG.8494.1,STRG.8494.3,Trinity_GG_4678_c0_g1_i1	3
scaffold_11	retained_intron	8040872	8040989	-	asmbl_6795	none	blat.proc3829893.chain_2264	1	STRG.13796.1,blat.proc3829893.chain_2263	2
scaffold_25	retained_intron	9338119	9338227	+	asmbl_33797,asmbl_33798	none	Trinity_GG_15314_c0_g1_i3,blat.proc3829885.chain_771,blat.proc3829885.chain_772,blat.proc3829885.chain_775	4	STRG.27743.1,blat.proc3829885.chain_770,blat.proc3829885.chain_773,blat.proc3829885.chain_774	4
scaffold_8	starts_in_intron	745661	745661	+	asmbl_51656	none	blat.proc3829875.chain_2177	1	STRG.9720.1,blat.proc3829875.chain_2176	2
scaffold_6	ends_in_intron	5441929	5441929	+	asmbl_46893	none	STRG.7506.2,blat.proc3829873.chain_3597	2	STRG.7506.1,Trinity_GG_4097_c0_g1_i1,blat.proc3829873.chain_3599	3
scaffold_19	spliced_intron	12105421	12105533	+	asmbl_22548	none	STRG.22525.1,blat.proc3829881.chain_3474	2	blat.proc3829881.chain_3475	1
scaffold_10	ends_in_intron	11878669	11878669	-	asmbl_3700	none	Trinity_GG_24180_c1_g1_i1,blat.proc3829893.chain_1303	2	STRG.12820.1,STRG.12820.2,STRG.12820.3,blat.proc3829893.chain_1302	4
scaffold_16	alternate_exon	5514427	5514552	-	asmbl_16294	none	STRG.19300.1,blat.proc3829897.chain_291	2	STRG.19300.2,blat.proc3829897.chain_292	2
scaffold_23	alt_acceptor	6994681	6994682	-	asmbl_31723	none	STRG.26002.1	1	STRG.26002.2,blat.proc3829899.chain_3115	2
scaffold_6	alt_acceptor	2902606	2902607	+	asmbl_46728	none	blat.proc3829873.chain_3409	1	blat.proc3829873.chain_3410	1
scaffold_23	alternate_exon	10831789	10831869	+	asmbl_31166	none	STRG.26263.2	1	STRG.26263.1,blat.proc3829883.chain_3117	2
scaffold_23	alternate_exon	4100078	4100213	-	asmbl_31550	none	Trinity_GG_31457_c0_g1_i5,blat.proc3829899.chain_2936	2	STRG.25802.2	1
scaffold_21	retained_intron	8008219	8008373	+	asmbl_28793	none	Trinity_GG_13472_c0_g1_i1,blat.proc3829883.chain_1462	2	STRG.24326.1,STRG.24326.2,STRG.24326.3,blat.proc3829883.chain_1460,blat.proc3829883.chain_1461,blat.proc3829883.chain_1463,blat.proc3829883.chain_1465,blat.proc3829883.chain_1466	8
scaffold_19	retained_intron	12972869	12973050	-	asmbl_21784	none	STRG.22606.3	1	STRG.22606.2,STRG.22606.5,Trinity_GG_29578_c0_g1_i1,Trinity_GG_29578_c0_g1_i6,Trinity_GG_29578_c0_g1_i7,blat.proc3829897.chain_3318,blat.proc3829897.chain_3322,blat.proc3829897.chain_3325	8
scaffold_1	retained_intron	1608805	1609003	+	asmbl_1496,asmbl_1497,asmbl_1500	none	Trinity_GG_85_c0_g1_i2,Trinity_GG_85_c0_g1_i3,Trinity_GG_85_c0_g1_i5,blat.proc3829871.chain_143,blat.proc3829871.chain_144,blat.proc3829871.chain_148	6	STRG.102.1,Trinity_GG_85_c0_g1_i1,Trinity_GG_85_c0_g1_i6,blat.proc3829871.chain_145,blat.proc3829871.chain_146	5
scaffold_395	retained_exon	2824	3030	-	asmbl_41033	none	STRG.30280.2	1	STRG.30280.1,blat.proc3829901.chain_3348	2
scaffold_17	alt_acceptor	5917635	5917636	-	asmbl_18998	none	STRG.20267.1	1	STRG.20267.2,blat.proc3829897.chain_1169	2
scaffold_12	spliced_intron	10187010	10187126	-	asmbl_7858,asmbl_7859,asmbl_7860,asmbl_7861,asmbl_7862,asmbl_7863,asmbl_7864,asmbl_7865,asmbl_7866	none	STRG.14979.1,STRG.14979.2,STRG.14979.3,STRG.14979.4,STRG.14979.5,STRG.14979.6,blat.proc3829893.chain_3400,blat.proc3829893.chain_3401,blat.proc3829893.chain_3402,blat.proc3829893.chain_3403,blat.proc3829893.chain_3404,blat.proc3829893.chain_3405	12	Trinity_GG_25385_c0_g1_i10,blat.proc3829893.chain_3399	2
scaffold_1	retained_intron	1982208	1983075	-	asmbl_98	none	blat.proc3829887.chain_12	1	blat.proc3829887.chain_11	1
scaffold_10	alternate_exon	13646135	13646401	-	asmbl_3824	none	STRG.12951.1,blat.proc3829893.chain_1470	2	blat.proc3829893.chain_1471	1
scaffold_228	skipped_exon	4088	5334	-	asmbl_30581	none	STRG.30221.2,blat.proc3829901.chain_3287	2	STRG.30221.1,blat.proc3829901.chain_3286	2
scaffold_26	alt_donor	6018172	6018173	+	asmbl_35595,asmbl_35596	none	STRG.28302.2,blat.proc3829885.chain_1340	2	STRG.28302.1,blat.proc3829885.chain_1339	2
scaffold_21	alt_acceptor	11261521	11261522	-	asmbl_28133,asmbl_28135	none	Trinity_GG_30772_c0_g1_i3,Trinity_GG_30772_c0_g1_i4,blat.proc3829899.chain_1742,blat.proc3829899.chain_1744	4	STRG.24586.1,Trinity_GG_30772_c0_g1_i5,blat.proc3829899.chain_1743	3
scaffold_13	retained_intron	3704479	3704514	-	asmbl_9524	none	STRG.15671.6	1	STRG.15671.1,STRG.15671.3,STRG.15671.4,STRG.15671.5	4
scaffold_2	alt_donor	5391981	5391982	-	asmbl_23175	none	STRG.1948.2	1	STRG.1948.1,blat.proc3829887.chain_1757	2
scaffold_14	alt_donor	14536728	14536729	-	asmbl_13675	none	STRG.17699.1	1	STRG.17699.3,STRG.17699.4,Trinity_GG_26960_c0_g1_i1	3
scaffold_23	alternate_exon	7916246	7916870	-	asmbl_31773	none	STRG.26078.5,Trinity_GG_31608_c1_g1_i1,blat.proc3829899.chain_3210	3	STRG.26078.4,blat.proc3829899.chain_3208	2
scaffold_3	retained_intron	3062725	3062797	+	asmbl_39887	none	STRG.3058.1,blat.proc3829871.chain_3136,blat.proc3829871.chain_3137	3	STRG.3058.2,Trinity_GG_1682_c0_g1_i3,blat.proc3829871.chain_3138	3
scaffold_16	retained_intron	8296144	8296212	+	asmbl_17186	none	STRG.19456.1	1	STRG.19456.2	1
scaffold_13	alternate_exon	8805849	8805932	-	asmbl_9939,asmbl_9942	none	STRG.16137.4,Trinity_GG_26094_c0_g1_i4,blat.proc3829895.chain_939	3	blat.proc3829895.chain_944	1
scaffold_22	retained_exon	9718220	9718379	+	asmbl_29602	none	STRG.25292.2	1	STRG.25292.1,blat.proc3829883.chain_2231	2
scaffold_26	alternate_exon	3266000	3266496	+	asmbl_35300	none	STRG.27995.2,blat.proc3829885.chain_957,blat.proc3829885.chain_958	3	STRG.27995.3	1
scaffold_20	alternate_exon	11774570	11774614	-	asmbl_27124	none	STRG.23671.3,Trinity_GG_30187_c0_g1_i1,blat.proc3829899.chain_669	3	STRG.23671.1,STRG.23671.2,Trinity_GG_30187_c0_g1_i2,Trinity_GG_30187_c0_g1_i3,blat.proc3829899.chain_670,blat.proc3829899.chain_671	6
scaffold_1	retained_intron	6576083	6576214	-	asmbl_382	none	STRG.448.1,blat.proc3829887.chain_263	2	STRG.448.2,blat.proc3829887.chain_262,blat.proc3829887.chain_264	3
scaffold_5	alt_donor	15043267	15043268	-	asmbl_46018,asmbl_46022	none	STRG.6692.3,STRG.6692.7,blat.proc3829889.chain_2738,blat.proc3829889.chain_2739	4	STRG.6692.2,STRG.6692.4,STRG.6692.5,blat.proc3829889.chain_2741,blat.proc3829889.chain_2742	5
scaffold_3	retained_intron	14425017	14426154	+	asmbl_40482,asmbl_40483	none	STRG.3785.2,STRG.3785.3,Trinity_GG_2146_c0_g1_i3,Trinity_GG_2146_c0_g1_i5,blat.proc3829873.chain_230,blat.proc3829873.chain_231	6	STRG.3785.1,Trinity_GG_2146_c0_g1_i2,blat.proc3829873.chain_229	3
scaffold_3	ends_in_intron	1766027	1766027	+	asmbl_39832	none	Trinity_GG_1694_c0_g2_i1,blat.proc3829871.chain_3165	2	STRG.2990.1	1
scaffold_12	alt_acceptor	977226	977227	-	asmbl_7423	none	STRG.14425.3,blat.proc3829893.chain_2840	2	STRG.14425.1,STRG.14425.4,blat.proc3829893.chain_2839	3
scaffold_8	alt_acceptor	3615885	3615886	+	asmbl_51774	none	STRG.9854.2,blat.proc3829875.chain_2279	2	STRG.9854.3	1
scaffold_27	spliced_intron	2436344	2436418	+	asmbl_36044	none	STRG.28696.2	1	blat.proc3829885.chain_1760	1
scaffold_26	spliced_intron	6350832	6351171	-	asmbl_34953	none	STRG.28315.3,blat.proc3829901.chain_1404	2	STRG.28315.1,blat.proc3829901.chain_1401	2
scaffold_25	alt_acceptor	4877158	4877159	+	asmbl_33539	none	STRG.27405.1,Trinity_GG_15110_c0_g1_i2,blat.proc3829885.chain_434	3	STRG.27405.2	1
scaffold_5	retained_intron	4683007	4683535	-	asmbl_45371	none	STRG.5919.2,blat.proc3829889.chain_2025	2	blat.proc3829889.chain_2027,blat.proc3829889.chain_2028,blat.proc3829889.chain_2032,blat.proc3829889.chain_2033	4
scaffold_15	alt_acceptor	11401715	11401716	-	asmbl_15512,asmbl_15515	none	STRG.18596.2,STRG.18596.3,blat.proc3829895.chain_3375	3	STRG.18596.1,STRG.18596.5,blat.proc3829895.chain_3373,blat.proc3829895.chain_3374	4
scaffold_7	starts_in_intron	717913	717913	-	asmbl_49506	none	Trinity_GG_21938_c0_g1_i3,blat.proc3829891.chain_981	2	STRG.8600.1,blat.proc3829891.chain_979	2
scaffold_4	retained_intron	4498633	4498751	-	asmbl_41257	none	Trinity_GG_19457_c0_g1_i3,blat.proc3829889.chain_478	2	STRG.4352.1,STRG.4352.2,Trinity_GG_19457_c0_g1_i2,blat.proc3829889.chain_479	4
scaffold_20	ends_in_intron	4369282	4369282	+	asmbl_25734	none	blat.proc3829883.chain_182	1	STRG.23107.1,STRG.23107.2,blat.proc3829883.chain_183	3
scaffold_10	starts_in_intron	11602290	11602290	+	asmbl_4759	none	blat.proc3829877.chain_1383	1	STRG.12807.1,STRG.12807.2,STRG.12807.5,blat.proc3829877.chain_1378,blat.proc3829877.chain_1380,blat.proc3829877.chain_1381,blat.proc3829877.chain_1384,blat.proc3829877.chain_1385	8
scaffold_19	spliced_intron	9521510	9521794	+	asmbl_22410	none	STRG.22371.2	1	STRG.22371.1,blat.proc3829897.chain_3095	2
scaffold_14	alternate_exon	9287287	9293843	-	asmbl_13356,asmbl_13357	none	blat.proc3829895.chain_2044,blat.proc3829895.chain_2046,blat.proc3829895.chain_2047,blat.proc3829895.chain_2051	4	blat.proc3829895.chain_2050	1
scaffold_8	starts_in_intron	10134549	10134549	+	asmbl_52135	none	Trinity_GG_5705_c0_g1_i2,blat.proc3829875.chain_2762	2	STRG.10260.1,Trinity_GG_5705_c0_g1_i1,blat.proc3829875.chain_2763	3
scaffold_26	alt_donor	3789811	3789812	+	asmbl_35363	none	STRG.28051.2	1	STRG.28051.1,STRG.28051.4	2
scaffold_5	alternate_exon	11545561	11545608	+	asmbl_44417	none	STRG.6409.2	1	STRG.6409.1,blat.proc3829873.chain_2545	2
scaffold_23	retained_exon	7235231	7235352	+	asmbl_30978,asmbl_30979	none	STRG.26027.1,STRG.26027.3	2	STRG.26027.2	1
scaffold_21	ends_in_intron	5453563	5453563	+	asmbl_28587	none	STRG.24067.2,blat.proc3829883.chain_1254	2	STRG.24067.1,Trinity_GG_13358_c1_g2_i1,blat.proc3829883.chain_1255	3
scaffold_6	starts_in_intron	14510353	14510353	+	asmbl_47557	none	Trinity_GG_4524_c0_g1_i1,blat.proc3829875.chain_635	2	STRG.8202.1,STRG.8202.2,Trinity_GG_4524_c0_g1_i2,Trinity_GG_4524_c2_g1_i1,blat.proc3829875.chain_636,blat.proc3829875.chain_638	6
scaffold_5	alternate_exon	18560471	18560555	+	asmbl_44926	none	STRG.6978.2	1	STRG.6978.4,Trinity_GG_3847_c0_g1_i2,Trinity_GG_3847_c0_g1_i8,blat.proc3829873.chain_3146,blat.proc3829873.chain_3148	5
scaffold_3	retained_intron	13898905	13899019	+	asmbl_40426	none	blat.proc3829873.chain_143	1	STRG.3737.1,STRG.3737.2,blat.proc3829873.chain_144,blat.proc3829873.chain_145	4
scaffold_21	alt_acceptor	9930172	9930173	-	asmbl_28015	none	STRG.24446.4	1	STRG.24446.1,STRG.24446.5,STRG.24446.6,blat.proc3829899.chain_1512,blat.proc3829899.chain_1513	5
scaffold_26	alt_donor	4141796	4141797	+	asmbl_35401	none	STRG.28106.4	1	STRG.28106.1,STRG.28106.2,STRG.28106.3	3
scaffold_18	alt_donor	6901657	6901658	+	asmbl_20720	none	STRG.21380.1,blat.proc3829881.chain_2343	2	Trinity_GG_11804_c0_g1_i2,blat.proc3829881.chain_2344	2
scaffold_23	alt_acceptor	317005	317006	-	asmbl_31300	none	STRG.25533.2	1	STRG.25533.1,blat.proc3829899.chain_2596	2
scaffold_12	starts_in_intron	2722102	2722102	+	asmbl_8482	none	blat.proc3829877.chain_3021	1	Trinity_GG_8024_c0_g1_i4,Trinity_GG_8024_c0_g1_i5,blat.proc3829877.chain_3017,blat.proc3829877.chain_3019	4
scaffold_6	retained_intron	3052979	3053100	+	asmbl_46742	none	Trinity_GG_4015_c0_g2_i1,blat.proc3829873.chain_3449	2	blat.proc3829873.chain_3448	1
scaffold_1	starts_in_intron	6283726	6283726	-	asmbl_352	none	STRG.425.5	1	STRG.425.1,STRG.425.2,STRG.425.3,STRG.425.4,blat.proc3829887.chain_325,blat.proc3829887.chain_328,blat.proc3829887.chain_330,blat.proc3829887.chain_333,blat.proc3829887.chain_334	9
scaffold_10	spliced_intron	761892	761975	-	asmbl_2921,asmbl_2922,asmbl_2924	none	STRG.11951.1,STRG.11951.2,Trinity_GG_23667_c0_g1_i1,Trinity_GG_23667_c0_g1_i3,blat.proc3829893.chain_408,blat.proc3829893.chain_409	6	Trinity_GG_23667_c0_g1_i2,blat.proc3829893.chain_410	2
scaffold_10	skipped_exon	1425641	1425931	+	asmbl_4214,asmbl_4218,asmbl_4221	none	STRG.12005.1,STRG.12005.4,STRG.12005.5,Trinity_GG_6688_c0_g1_i6,blat.proc3829877.chain_729,blat.proc3829877.chain_731	6	blat.proc3829877.chain_733	1
scaffold_17	spliced_intron	6684218	6684386	+	asmbl_17995	none	STRG.20309.3,blat.proc3829881.chain_1060	2	STRG.20309.2,blat.proc3829881.chain_1058	2
scaffold_17	alternate_exon	12383155	12383231	-	asmbl_19373	none	blat.proc3829897.chain_1640	1	STRG.20776.1,STRG.20776.2,STRG.20776.3,STRG.20776.4	4
scaffold_1	starts_in_intron	20451218	20451218	+	asmbl_2623	none	Trinity_GG_808_c0_g1_i1	1	STRG.1392.2	1
scaffold_28	retained_intron	5611216	5611353	-	asmbl_37621,asmbl_37622,asmbl_37625,asmbl_37626	none	STRG.29674.1,STRG.29674.4,STRG.29674.5,blat.proc3829901.chain_2807,blat.proc3829901.chain_2810	5	STRG.29674.2,STRG.29674.6,Trinity_GG_33655_c0_g1_i9,blat.proc3829901.chain_2806	4
scaffold_5	ends_in_intron	11802057	11802057	+	asmbl_44430	none	blat.proc3829873.chain_2456	1	STRG.6430.1,blat.proc3829873.chain_2457	2
scaffold_14	alt_donor	15928139	15928140	-	asmbl_13746	none	STRG.17822.4	1	STRG.17822.3	1
scaffold_14	ends_in_intron	6397920	6397920	-	asmbl_13106	none	Trinity_GG_26589_c0_g1_i1,blat.proc3829895.chain_1765	2	STRG.17070.1,blat.proc3829895.chain_1766	2
scaffold_13	retained_intron	989090	989193	-	asmbl_9357	none	blat.proc3829895.chain_201	1	STRG.15463.1,blat.proc3829895.chain_200	2
scaffold_5	retained_intron	5045141	5045424	+	asmbl_43993	none	Trinity_GG_3261_c0_g2_i1,blat.proc3829873.chain_2111	2	STRG.5951.2,blat.proc3829873.chain_2112	2
scaffold_13	spliced_intron	6397233	6397368	+	asmbl_10907,asmbl_10908,asmbl_10910,asmbl_10913,asmbl_10916	none	STRG.15914.2,STRG.15914.4,STRG.15914.5,Trinity_GG_8718_c0_g1_i4,Trinity_GG_8718_c0_g1_i5,Trinity_GG_8718_c0_g1_i8,Trinity_GG_8718_c0_g1_i9,blat.proc3829879.chain_549,blat.proc3829879.chain_550,blat.proc3829879.chain_552,blat.proc3829879.chain_556	11	Trinity_GG_8718_c0_g1_i3,blat.proc3829879.chain_554	2
scaffold_16	alt_acceptor	4149780	4149781	+	asmbl_16971,asmbl_16972	none	STRG.19218.2,STRG.19218.3	2	STRG.19218.1,Trinity_GG_10518_c0_g1_i2,blat.proc3829881.chain_44	3
scaffold_3	spliced_intron	4275917	4276088	+	asmbl_39951	none	STRG.3122.1,blat.proc3829871.chain_3229	2	STRG.3122.2,blat.proc3829871.chain_3230	2
scaffold_4	skipped_exon	14981928	14982524	+	asmbl_43251	none	STRG.5108.3,blat.proc3829873.chain_1437	2	STRG.5108.1,STRG.5108.2,blat.proc3829873.chain_1439	3
scaffold_4	skipped_exon	3251176	3252469	-	asmbl_41172	none	STRG.4249.2	1	STRG.4249.1,blat.proc3829889.chain_380	2
scaffold_2	alternate_exon	6085161	6090692	-	asmbl_23201	none	STRG.1980.1,blat.proc3829887.chain_1841	2	STRG.1980.2,blat.proc3829887.chain_1842	2
scaffold_26	spliced_intron	5043449	5043773	+	asmbl_35463,asmbl_35464,asmbl_35466,asmbl_35468,asmbl_35469,asmbl_35470,asmbl_35476,asmbl_35479,asmbl_35480,asmbl_35481	none	STRG.28206.1,blat.proc3829883.chain_2394,blat.proc3829883.chain_2396,blat.proc3829885.chain_1156,blat.proc3829885.chain_1157,blat.proc3829885.chain_1158,blat.proc3829885.chain_1159,blat.proc3829885.chain_1163,blat.proc3829885.chain_1164,blat.proc3829885.chain_1167,blat.proc3829885.chain_1168,blat.proc3829885.chain_1169	12	Trinity_GG_14060_c0_g1_i3,blat.proc3829883.chain_2397	2
scaffold_16	alt_acceptor	7372454	7372455	+	asmbl_17131,asmbl_17132	none	STRG.19387.2,STRG.19387.3,blat.proc3829881.chain_228,blat.proc3829881.chain_229	4	STRG.19387.1,blat.proc3829881.chain_230	2
scaffold_22	retained_exon	10044904	10045098	-	asmbl_30349	none	STRG.25340.4	1	STRG.25340.3	1
scaffold_1	starts_in_intron	11426744	11426744	+	asmbl_2094	none	Trinity_GG_463_c0_g1_i5,blat.proc3829871.chain_805	2	STRG.751.1,STRG.751.2,STRG.751.3,Trinity_GG_463_c0_g1_i3,Trinity_GG_463_c0_g1_i4,blat.proc3829871.chain_801,blat.proc3829871.chain_802,blat.proc3829871.chain_803,blat.proc3829871.chain_804	9
scaffold_14	retained_intron	5161976	5162170	+	asmbl_11984	none	STRG.16998.2	1	STRG.16998.1,blat.proc3829879.chain_1651,blat.proc3829879.chain_1652	3
scaffold_11	spliced_intron	8719314	8719523	-	asmbl_6857	none	Trinity_GG_24779_c0_g2_i2,blat.proc3829893.chain_2335	2	Trinity_GG_24779_c0_g2_i1,blat.proc3829893.chain_2331	2
scaffold_13	alt_donor	16048875	16048876	+	asmbl_11525,asmbl_11526	none	STRG.16628.2,blat.proc3829879.chain_1379	2	STRG.16628.1	1
scaffold_11	skipped_exon	6504654	6505440	+	asmbl_5596	none	STRG.13680.2	1	STRG.13680.1,Trinity_GG_7529_c0_g1_i2,blat.proc3829877.chain_2155	3
scaffold_13	retained_intron	517905	519724	+	asmbl_10457	none	STRG.15434.1,blat.proc3829879.chain_114	2	Trinity_GG_8491_c0_g1_i2,blat.proc3829879.chain_113	2
scaffold_18	retained_intron	7867916	7867988	+	asmbl_20824,asmbl_20825,asmbl_20827,asmbl_20828,asmbl_20831,asmbl_20833	none	STRG.21477.1,STRG.21477.4,STRG.21477.6,Trinity_GG_11877_c0_g1_i12,Trinity_GG_11877_c0_g1_i6,blat.proc3829881.chain_2467,blat.proc3829881.chain_2473,blat.proc3829881.chain_2474,blat.proc3829881.chain_2475,blat.proc3829881.chain_2476	10	STRG.21477.2,STRG.21477.3,Trinity_GG_11877_c0_g1_i14,Trinity_GG_11877_c0_g1_i7,blat.proc3829881.chain_2468,blat.proc3829881.chain_2469,blat.proc3829881.chain_2471	7
scaffold_22	alt_acceptor	474206	474207	+	asmbl_29145	none	STRG.24677.2	1	STRG.24677.1,Trinity_GG_13636_c1_g1_i1,blat.proc3829883.chain_1712	3
scaffold_13	starts_in_intron	3593920	3593920	+	asmbl_10699	none	Trinity_GG_8585_c0_g1_i4,blat.proc3829879.chain_315	2	STRG.15662.1,STRG.15662.2,Trinity_GG_8585_c0_g1_i1,Trinity_GG_8585_c0_g1_i3,blat.proc3829879.chain_316,blat.proc3829879.chain_317	6
scaffold_3	retained_intron	1089470	1089642	+	asmbl_39785	none	STRG.2937.1,blat.proc3829871.chain_3056	2	STRG.2937.2,STRG.2937.3	2
scaffold_17	spliced_intron	8845886	8846064	+	asmbl_18150	none	STRG.20483.1,blat.proc3829881.chain_1284	2	STRG.20483.2,Trinity_GG_11225_c0_g1_i6,blat.proc3829881.chain_1283,blat.proc3829881.chain_1285	4
scaffold_4	retained_intron	14648742	14648884	-	asmbl_41814,asmbl_41815,asmbl_41816	none	blat.proc3829889.chain_1117,blat.proc3829889.chain_1118,blat.proc3829889.chain_1123	3	STRG.5094.1,STRG.5094.2,STRG.5094.3,blat.proc3829889.chain_1119,blat.proc3829889.chain_1121,blat.proc3829889.chain_1122	6
scaffold_6	retained_intron	12554228	12554438	-	asmbl_48764	none	blat.proc3829891.chain_321	1	STRG.8010.1,STRG.8010.2,STRG.8010.3,blat.proc3829891.chain_318,blat.proc3829891.chain_322	5
scaffold_16	retained_intron	4017628	4017730	-	asmbl_16206	none	blat.proc3829897.chain_144	1	STRG.19207.1,blat.proc3829897.chain_143,blat.proc3829897.chain_145	3
scaffold_13	alt_acceptor	5208651	5208652	+	asmbl_10813	none	STRG.15811.3	1	STRG.15811.1,Trinity_GG_8694_c0_g1_i1,blat.proc3829879.chain_502	3
scaffold_9	starts_in_intron	3410495	3410495	-	asmbl_54868	none	Trinity_GG_23093_c0_g1_i1	1	STRG.10946.1,STRG.10946.3,blat.proc3829891.chain_3121,blat.proc3829891.chain_3122,blat.proc3829891.chain_3124	5
scaffold_6	starts_in_intron	16293655	16293655	-	asmbl_49049	none	blat.proc3829891.chain_667	1	STRG.8349.1,blat.proc3829891.chain_666,blat.proc3829891.chain_668	3
scaffold_4	alt_donor	7543925	7543926	+	asmbl_42839	none	STRG.4589.2,blat.proc3829873.chain_971	2	STRG.4589.1	1
scaffold_1	alt_acceptor	3287306	3287307	+	asmbl_1588	none	STRG.204.1	1	STRG.204.3,blat.proc3829871.chain_252,blat.proc3829871.chain_253	3
scaffold_20	retained_intron	2613659	2614166	-	asmbl_26578	none	STRG.22975.2	1	STRG.22975.1,blat.proc3829897.chain_3704	2
scaffold_2	alternate_exon	18916832	18916883	-	asmbl_23852	none	Trinity_GG_18545_c0_g1_i2,blat.proc3829887.chain_2599	2	STRG.2765.1,STRG.2765.2,Trinity_GG_18545_c0_g1_i1,Trinity_GG_18545_c0_g1_i3,Trinity_GG_18545_c0_g1_i4,blat.proc3829887.chain_2597,blat.proc3829887.chain_2598,blat.proc3829887.chain_2600	8
scaffold_6	spliced_intron	14512780	14513103	-	asmbl_48949	none	STRG.8207.2	1	Trinity_GG_21677_c0_g1_i2,blat.proc3829891.chain_522	2
scaffold_23	retained_exon	5863162	5863232	-	asmbl_31671	none	STRG.25948.1,Trinity_GG_31529_c0_g1_i3,blat.proc3829899.chain_3062	3	Trinity_GG_31529_c0_g1_i4,blat.proc3829899.chain_3063	2
scaffold_8	ends_in_intron	4830562	4830562	-	asmbl_52797	none	Trinity_GG_22558_c2_g1_i1,blat.proc3829891.chain_2098	2	STRG.9938.1,STRG.9938.2,blat.proc3829891.chain_2094,blat.proc3829891.chain_2096	4
scaffold_17	spliced_intron	3141752	3141861	-	asmbl_18846	none	STRG.20084.1,blat.proc3829897.chain_996	2	STRG.20084.2	1
scaffold_1	alternate_exon	11708171	11708536	+	asmbl_2119	none	blat.proc3829871.chain_830	1	STRG.784.1,Trinity_GG_470_c0_g1_i2,blat.proc3829871.chain_828	3
scaffold_3	retained_intron	14519600	14519705	-	asmbl_39337	none	Trinity_GG_19119_c0_g1_i4,blat.proc3829887.chain_3618	2	Trinity_GG_19119_c0_g1_i1,blat.proc3829887.chain_3616	2
scaffold_6	alt_acceptor	7172553	7172554	+	asmbl_46988	none	blat.proc3829873.chain_3739	1	STRG.7621.1,STRG.7621.2,STRG.7621.3,STRG.7621.4	4
scaffold_19	starts_in_intron	678654	678654	+	asmbl_22002	none	Trinity_GG_12091_c0_g1_i4,blat.proc3829881.chain_2825	2	STRG.21838.1,blat.proc3829881.chain_2823,blat.proc3829881.chain_2826	3
scaffold_24	alt_acceptor	8958006	8958007	+	asmbl_32472	none	STRG.26898.1	1	STRG.26898.2,Trinity_GG_14870_c0_g1_i2,blat.proc3829885.chain_35	3
scaffold_13	alt_acceptor	9333784	9333785	+	asmbl_11181	none	STRG.16185.2,Trinity_GG_8895_c0_g1_i2,blat.proc3829879.chain_922	3	STRG.16185.1,Trinity_GG_8895_c0_g1_i1,blat.proc3829879.chain_923	3
scaffold_4	ends_in_intron	17031260	17031260	+	asmbl_43361,asmbl_43362	none	blat.proc3829873.chain_1532,blat.proc3829873.chain_1533	2	STRG.5305.2,STRG.5305.3,blat.proc3829873.chain_1531	3
scaffold_12	spliced_intron	12307824	12309134	+	asmbl_8950,asmbl_8952	none	STRG.15117.1,STRG.15117.2,blat.proc3829877.chain_3596	3	STRG.15117.3,blat.proc3829877.chain_3595	2
scaffold_8	starts_in_intron	1133960	1133960	+	asmbl_51672	none	Trinity_GG_5394_c0_g1_i1,blat.proc3829875.chain_2195	2	STRG.9742.1,STRG.9742.3	2
scaffold_19	starts_in_intron	12487092	12487092	-	asmbl_21713	none	blat.proc3829897.chain_3287	1	STRG.22567.1,blat.proc3829897.chain_3286	2
scaffold_1	alt_acceptor	14202389	14202390	+	asmbl_2326	none	STRG.1004.1,Trinity_GG_586_c0_g1_i1,blat.proc3829871.chain_1048	3	STRG.1004.2,Trinity_GG_586_c0_g1_i2,Trinity_GG_586_c0_g1_i4,Trinity_GG_586_c0_g1_i9,blat.proc3829871.chain_1046,blat.proc3829871.chain_1047,blat.proc3829871.chain_1050	7
scaffold_11	alt_acceptor	1016877	1016878	-	asmbl_6377	none	STRG.13289.1,blat.proc3829893.chain_1724	2	STRG.13289.2	1
scaffold_6	retained_exon	13133948	13134017	-	asmbl_48820	none	STRG.8063.1,blat.proc3829891.chain_352	2	STRG.8063.2,Trinity_GG_21591_c0_g1_i2,blat.proc3829891.chain_353	3
scaffold_13	alt_acceptor	5129984	5129985	+	asmbl_10807,asmbl_10809,asmbl_10810	none	STRG.15801.2,STRG.15801.3,blat.proc3829879.chain_497	3	STRG.15801.1,blat.proc3829879.chain_498,blat.proc3829879.chain_499	3
scaffold_17	spliced_intron	1353517	1353628	+	asmbl_17732	none	STRG.19960.1,blat.proc3829881.chain_801	2	STRG.19960.2,Trinity_GG_10940_c0_g1_i2,blat.proc3829881.chain_802	3
scaffold_22	alternate_exon	11641430	11641612	-	asmbl_30459	none	STRG.25493.1	1	STRG.25493.3	1
scaffold_8	spliced_intron	3615695	3615920	+	asmbl_51778	none	STRG.9854.3	1	STRG.9854.1,blat.proc3829875.chain_2278	2
scaffold_7	retained_intron	12727956	12728043	+	asmbl_51176	none	blat.proc3829875.chain_1839	1	STRG.9377.1,blat.proc3829875.chain_1838	2
scaffold_27	starts_in_intron	341573	341573	-	asmbl_36627	none	blat.proc3829901.chain_1659	1	STRG.28542.1,STRG.28542.2,STRG.28542.3,blat.proc3829901.chain_1658,blat.proc3829901.chain_1660,blat.proc3829901.chain_1661	6
scaffold_1	starts_in_intron	1217866	1217866	-	asmbl_49	none	blat.proc3829885.chain_3727	1	STRG.64.1,STRG.64.3,Trinity_GG_17052_c0_g1_i1,blat.proc3829885.chain_3726	4
scaffold_28	spliced_intron	5022371	5022502	+	asmbl_38258	none	STRG.29640.2	1	STRG.29640.1	1
scaffold_18	starts_in_intron	12401088	12401088	-	asmbl_20170	none	blat.proc3829897.chain_2497	1	STRG.21697.1	1
scaffold_15	alt_donor	6197268	6197269	+	asmbl_14189,asmbl_14192	none	STRG.18272.2,STRG.18272.4	2	STRG.18272.1,STRG.18272.5	2
scaffold_15	ends_in_intron	6080126	6080126	-	asmbl_15254	none	blat.proc3829895.chain_3028	1	STRG.18259.1,blat.proc3829895.chain_3029	2
scaffold_8	alt_acceptor	16499324	16499325	-	asmbl_53428	none	STRG.10621.5	1	STRG.10621.1,STRG.10621.2,Trinity_GG_22960_c0_g1_i18,Trinity_GG_22960_c0_g1_i19,Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2857,blat.proc3829891.chain_2863,blat.proc3829891.chain_2864,blat.proc3829891.chain_2868,blat.proc3829891.chain_2869,blat.proc3829891.chain_2870,blat.proc3829891.chain_2872	16
scaffold_1	starts_in_intron	12758113	12758113	-	asmbl_765	none	Trinity_GG_17461_c0_g1_i6,blat.proc3829887.chain_749	2	STRG.894.1,STRG.894.2,blat.proc3829887.chain_750,blat.proc3829887.chain_752	4
scaffold_23	retained_intron	2164190	2164645	-	asmbl_31421	none	STRG.25669.2	1	STRG.25669.1	1
scaffold_6	ends_in_intron	8937272	8937272	+	asmbl_47118,asmbl_47119	none	STRG.7765.1,STRG.7765.2,blat.proc3829875.chain_41,blat.proc3829875.chain_42	4	STRG.7765.3	1
scaffold_3	spliced_intron	13647877	13648701	-	asmbl_39226	none	STRG.3705.2,Trinity_GG_19021_c0_g1_i1,blat.proc3829887.chain_3436	3	STRG.3705.1,Trinity_GG_19021_c0_g1_i2,blat.proc3829887.chain_3437	3
scaffold_10	retained_exon	16822208	16822303	+	asmbl_5000	none	STRG.13115.1	1	STRG.13115.2	1
scaffold_13	skipped_exon	3705037	3707221	-	asmbl_9527	none	STRG.15671.3	1	STRG.15671.4,STRG.15671.5,STRG.15671.6,blat.proc3829895.chain_438,blat.proc3829895.chain_439	5
scaffold_6	starts_in_intron	5011615	5011615	-	asmbl_48322	none	blat.proc3829889.chain_3537	1	STRG.7473.1,blat.proc3829889.chain_3536	2
scaffold_27	alternate_exon	4796566	4796716	-	asmbl_36924	none	STRG.28891.2,blat.proc3829901.chain_2067	2	STRG.28891.1,blat.proc3829901.chain_2068	2
scaffold_2	skipped_exon	10393641	10394971	+	asmbl_24739	none	STRG.2210.1	1	STRG.2210.2	1
scaffold_4	starts_in_intron	3233103	3233103	-	asmbl_41159,asmbl_41160	none	blat.proc3829889.chain_340,blat.proc3829889.chain_344	2	STRG.4246.1	1
scaffold_6	starts_in_intron	8034499	8034499	-	asmbl_48466	none	blat.proc3829889.chain_3696	1	STRG.7675.1,blat.proc3829889.chain_3697	2
scaffold_14	alternate_exon	7584872	7587401	-	asmbl_13214	none	STRG.17194.2,blat.proc3829895.chain_1914	2	STRG.17194.1	1
scaffold_18	retained_intron	7867463	7867988	+	asmbl_20827	none	STRG.21477.4,blat.proc3829881.chain_2467	2	STRG.21477.5,blat.proc3829881.chain_2470	2
scaffold_8	retained_intron	3101869	3101985	-	asmbl_52723	none	blat.proc3829891.chain_2002	1	STRG.9818.1,STRG.9818.2,blat.proc3829891.chain_2001,blat.proc3829891.chain_2003	4
scaffold_25	skipped_exon	9939882	9942193	-	asmbl_34500	none	STRG.27802.2	1	STRG.27802.1	1
scaffold_6	alternate_exon	15103886	15105286	-	asmbl_48992	none	STRG.8268.2	1	STRG.8268.1,blat.proc3829891.chain_565	2
scaffold_12	starts_in_intron	11328489	11328489	-	asmbl_7928	none	Trinity_GG_25411_c0_g1_i2,blat.proc3829893.chain_3444	2	STRG.15055.1,STRG.15055.2	2
scaffold_28	starts_in_intron	2156923	2156923	+	asmbl_38031	none	Trinity_GG_16291_c0_g1_i1,blat.proc3829885.chain_2494	2	STRG.29361.1,blat.proc3829885.chain_2495	2
scaffold_7	spliced_intron	1235897	1236200	+	asmbl_50476	none	STRG.8627.9	1	STRG.8627.2,STRG.8627.5,STRG.8627.6,Trinity_GG_4740_c0_g1_i13,Trinity_GG_4740_c0_g1_i14,Trinity_GG_4740_c0_g1_i16,blat.proc3829875.chain_1042,blat.proc3829875.chain_1043,blat.proc3829875.chain_1044,blat.proc3829875.chain_1045,blat.proc3829875.chain_1048,blat.proc3829875.chain_1049	12
scaffold_11	alternate_exon	8714309	8717399	-	asmbl_6853,asmbl_6858	none	STRG.13887.1,blat.proc3829893.chain_2332,blat.proc3829893.chain_2333	3	Trinity_GG_24779_c0_g2_i2,blat.proc3829893.chain_2335	2
scaffold_1	retained_exon	3286873	3286921	+	asmbl_1590	none	blat.proc3829871.chain_252	1	STRG.204.1,STRG.204.3,blat.proc3829871.chain_253	3
scaffold_20	alternate_exon	8255521	8256059	+	asmbl_25909	none	STRG.23355.1,Trinity_GG_12878_c0_g1_i1,blat.proc3829883.chain_436	3	STRG.23355.2	1
scaffold_5	alt_donor	8539946	8539947	-	asmbl_45593,asmbl_45596,asmbl_45598,asmbl_45602	none	STRG.6191.1,STRG.6191.3,blat.proc3829889.chain_2246,blat.proc3829889.chain_2248,blat.proc3829889.chain_2253	5	STRG.6191.4,blat.proc3829889.chain_2250	2
scaffold_6	retained_intron	2908621	2908725	+	asmbl_46734,asmbl_46735	none	STRG.7289.2,blat.proc3829873.chain_3369	2	blat.proc3829873.chain_3373	1
scaffold_9	retained_intron	6903131	6903325	-	asmbl_55051,asmbl_55054,asmbl_55057,asmbl_55058	none	STRG.11191.3,STRG.11191.4,blat.proc3829891.chain_3368,blat.proc3829891.chain_3372	4	STRG.11191.1,STRG.11191.2,STRG.11191.5,blat.proc3829891.chain_3366,blat.proc3829891.chain_3367,blat.proc3829891.chain_3369,blat.proc3829891.chain_3370,blat.proc3829891.chain_3371,blat.proc3829891.chain_3373,blat.proc3829891.chain_3374,blat.proc3829891.chain_3375	11
scaffold_15	spliced_intron	12597273	12597384	-	asmbl_15603,asmbl_15604,asmbl_15606	none	STRG.18702.1,Trinity_GG_27520_c0_g1_i3,Trinity_GG_27520_c0_g1_i4,Trinity_GG_27520_c0_g1_i5,blat.proc3829895.chain_3476,blat.proc3829895.chain_3478,blat.proc3829895.chain_3481	7	Trinity_GG_27520_c0_g1_i7,blat.proc3829895.chain_3479,blat.proc3829895.chain_3482	3
scaffold_16	starts_in_intron	6118349	6118349	+	asmbl_17062	none	blat.proc3829881.chain_188	1	STRG.19331.1,blat.proc3829881.chain_187,blat.proc3829881.chain_189	3
scaffold_6	alternate_exon	3051355	3053246	+	asmbl_46744,asmbl_46745,asmbl_46746	none	STRG.7308.1,blat.proc3829873.chain_3438,blat.proc3829873.chain_3439	3	STRG.7308.2,blat.proc3829873.chain_3440,blat.proc3829873.chain_3443,blat.proc3829873.chain_3445	4
scaffold_25	ends_in_intron	9561752	9561752	-	asmbl_34481	none	Trinity_GG_32562_c0_g1_i6,blat.proc3829901.chain_1034	2	STRG.27753.1,blat.proc3829901.chain_1036	2
scaffold_8	alternate_exon	851006	851203	+	asmbl_51662	none	STRG.9734.3,blat.proc3829875.chain_2146	2	STRG.9734.1	1
scaffold_18	alt_donor	4074018	4074019	+	asmbl_20518,asmbl_20519	none	STRG.21198.1,STRG.21198.4	2	STRG.21198.2,STRG.21198.3	2
scaffold_5	retained_intron	11630266	11631086	-	asmbl_45801,asmbl_45803	none	blat.proc3829889.chain_2526,blat.proc3829889.chain_2528	2	blat.proc3829889.chain_2524	1
scaffold_24	alt_donor	1946154	1946155	-	asmbl_32743	none	STRG.26401.4	1	STRG.26401.1,STRG.26401.2	2
scaffold_1	alt_donor	18030027	18030028	-	asmbl_1075	none	blat.proc3829871.chain_1253	1	STRG.1264.4	1
scaffold_6	ends_in_intron	11500016	11500016	+	asmbl_47275	none	blat.proc3829875.chain_309	1	STRG.7940.1,Trinity_GG_4344_c0_g2_i1,Trinity_GG_4344_c0_g2_i3,blat.proc3829875.chain_310,blat.proc3829875.chain_312	5
scaffold_6	starts_in_intron	9366046	9366046	-	asmbl_48555	none	blat.proc3829891.chain_55	1	STRG.7798.1,STRG.7798.2,blat.proc3829891.chain_54	3
scaffold_10	spliced_intron	1445500	1445785	-	asmbl_2969	none	STRG.12010.1,Trinity_GG_23689_c0_g2_i2,blat.proc3829893.chain_452	3	blat.proc3829893.chain_453	1
scaffold_20	retained_intron	5927643	5928282	-	asmbl_26714,asmbl_26716	none	STRG.23186.2,Trinity_GG_29904_c0_g1_i4,blat.proc3829899.chain_132,blat.proc3829899.chain_133	4	STRG.23186.1,blat.proc3829899.chain_131	2
scaffold_9	starts_in_intron	9588189	9588189	-	asmbl_55170	none	blat.proc3829891.chain_3476	1	STRG.11314.1,blat.proc3829891.chain_3475	2
scaffold_21	spliced_intron	5532922	5533006	-	asmbl_27697	none	STRG.24071.2	1	blat.proc3829899.chain_1090	1
scaffold_2228	alt_acceptor	555	556	+	asmbl_30563	none	STRG.30701.2	1	STRG.30701.1	1
scaffold_1	retained_intron	3270179	3270358	-	asmbl_140,asmbl_144	none	STRG.199.2,blat.proc3829887.chain_98	2	STRG.199.4	1
scaffold_19	starts_in_intron	7588762	7588762	-	asmbl_21456	none	blat.proc3829897.chain_2931	1	STRG.22232.1,STRG.22232.2	2
scaffold_11	alternate_exon	3091689	3091770	+	asmbl_5360	none	STRG.13419.1	1	STRG.13419.3	1
scaffold_612	starts_in_intron	4381	4381	-	asmbl_49402	none	STRG.30373.2	1	STRG.30373.1	1
scaffold_26	alt_acceptor	6722077	6722078	+	asmbl_35635	none	STRG.28354.3	1	STRG.28354.1,blat.proc3829885.chain_1286	2
scaffold_20	ends_in_intron	11546789	11546789	-	asmbl_27080	none	Trinity_GG_30178_c0_g1_i1,blat.proc3829899.chain_643	2	STRG.23646.1,blat.proc3829899.chain_644	2
scaffold_17	starts_in_intron	2535729	2535729	-	asmbl_18802	none	blat.proc3829897.chain_989	1	STRG.20035.3,blat.proc3829897.chain_988	2
scaffold_17	retained_intron	6684218	6684386	+	asmbl_17993	none	STRG.20309.2,blat.proc3829881.chain_1058	2	STRG.20309.3,blat.proc3829881.chain_1060	2
scaffold_6	alt_donor	13711503	13711504	-	asmbl_48878	none	STRG.8115.1	1	blat.proc3829891.chain_422	1
scaffold_4	alternate_exon	3265921	3266104	-	asmbl_41175	none	Trinity_GG_19379_c1_g1_i2,blat.proc3829889.chain_356	2	blat.proc3829889.chain_355	1
scaffold_24	ends_in_intron	8865338	8865338	+	asmbl_32458	none	blat.proc3829883.chain_3688	1	STRG.26887.1,blat.proc3829883.chain_3690	2
scaffold_2	spliced_intron	11199609	11200469	-	asmbl_23462	none	STRG.2251.1,blat.proc3829887.chain_2177	2	Trinity_GG_18294_c0_g1_i2,blat.proc3829887.chain_2175,blat.proc3829887.chain_2176,blat.proc3829887.chain_2178	4
scaffold_8	spliced_intron	7481498	7481842	-	asmbl_52903,asmbl_52905,asmbl_52907	none	STRG.10067.1,blat.proc3829891.chain_2149,blat.proc3829891.chain_2151,blat.proc3829891.chain_2152	4	Trinity_GG_22590_c0_g1_i3,blat.proc3829891.chain_2153	2
scaffold_15	alt_acceptor	11140818	11140819	-	asmbl_15500,asmbl_15505	none	blat.proc3829895.chain_3284,blat.proc3829895.chain_3285	2	blat.proc3829895.chain_3283,blat.proc3829895.chain_3286,blat.proc3829895.chain_3287,blat.proc3829895.chain_3288,blat.proc3829895.chain_3289	5
scaffold_28	alternate_exon	5231514	5231709	-	asmbl_37581,asmbl_37583	none	STRG.29650.1,blat.proc3829901.chain_2671,blat.proc3829901.chain_2672	3	Trinity_GG_33578_c0_g1_i9,blat.proc3829901.chain_2674	2
scaffold_3	ends_in_intron	6658184	6658184	+	asmbl_40069	none	blat.proc3829871.chain_3458	1	STRG.3290.1,STRG.3290.2,STRG.3290.3,STRG.3290.4,STRG.3290.5,Trinity_GG_1861_c0_g1_i14,blat.proc3829871.chain_3459,blat.proc3829871.chain_3460,blat.proc3829871.chain_3461,blat.proc3829871.chain_3464,blat.proc3829871.chain_3465,blat.proc3829871.chain_3466,blat.proc3829871.chain_3468,blat.proc3829871.chain_3469,blat.proc3829871.chain_3470	15
scaffold_20	skipped_exon	11612162	11613978	-	asmbl_27092,asmbl_27096	none	STRG.23657.2,STRG.23657.3	2	STRG.23657.1,blat.proc3829899.chain_696,blat.proc3829899.chain_703	3
scaffold_18	retained_intron	1860254	1860365	+	asmbl_20411	none	blat.proc3829881.chain_1896	1	STRG.21062.1,STRG.21062.2,blat.proc3829881.chain_1895	3
scaffold_1	starts_in_intron	11825787	11825787	+	asmbl_2142	none	Trinity_GG_509_c0_g1_i2,blat.proc3829871.chain_910	2	STRG.801.1,STRG.801.2,Trinity_GG_509_c0_g1_i1,Trinity_GG_509_c0_g1_i3,blat.proc3829871.chain_909,blat.proc3829871.chain_911	6
scaffold_4	retained_intron	4890208	4890382	-	asmbl_41277	none	Trinity_GG_19469_c0_g1_i1,blat.proc3829889.chain_500	2	STRG.4381.1,blat.proc3829889.chain_499	2
scaffold_27	retained_intron	2816855	2816968	+	asmbl_36077	none	Trinity_GG_15908_c0_g1_i1,blat.proc3829885.chain_1800	2	STRG.28742.1,STRG.28742.2,STRG.28742.3,STRG.28742.4,blat.proc3829885.chain_1799,blat.proc3829885.chain_1801,blat.proc3829885.chain_1802,blat.proc3829885.chain_1803	8
scaffold_3	ends_in_intron	7925673	7925673	+	asmbl_40142	none	blat.proc3829871.chain_3560	1	STRG.3376.1,STRG.3376.2,STRG.3376.3	3
scaffold_1	retained_intron	12745169	12745369	-	asmbl_756	none	STRG.892.2,blat.proc3829887.chain_756	2	STRG.892.3,STRG.892.4,blat.proc3829887.chain_755	3
scaffold_1	retained_intron	6830779	6830889	-	asmbl_395	none	blat.proc3829887.chain_367	1	STRG.478.1,STRG.478.2,blat.proc3829887.chain_368,blat.proc3829887.chain_369	4
scaffold_13	alternate_exon	1229234	1233344	+	asmbl_10514,asmbl_10518	none	STRG.15478.1,STRG.15478.2,Trinity_GG_8526_c1_g1_i2,Trinity_GG_8526_c4_g1_i1,blat.proc3829879.chain_207,blat.proc3829879.chain_211,blat.proc3829879.chain_214	7	STRG.15478.4	1
scaffold_23	starts_in_intron	5849909	5849909	-	asmbl_31670	none	STRG.25935.2,blat.proc3829899.chain_3069	2	STRG.25935.1,Trinity_GG_31533_c0_g1_i1,blat.proc3829899.chain_3068	3
scaffold_1	starts_in_intron	3630081	3630081	+	asmbl_1616	none	Trinity_GG_158_c0_g1_i1,blat.proc3829871.chain_274	2	STRG.226.1,blat.proc3829871.chain_273	2
scaffold_11	retained_intron	8567155	8567273	+	asmbl_5763,asmbl_5764	none	Trinity_GG_7617_c0_g1_i1,Trinity_GG_7617_c0_g1_i2,blat.proc3829877.chain_2307,blat.proc3829877.chain_2308	4	STRG.13862.1,Trinity_GG_7617_c0_g1_i3,blat.proc3829877.chain_2306	3
scaffold_10	alt_acceptor	17117717	17117718	+	asmbl_5018	none	STRG.13148.2	1	STRG.13148.1,blat.proc3829877.chain_1676	2
scaffold_27	retained_exon	6195097	6196599	+	asmbl_36334	none	STRG.28993.5	1	STRG.28993.3	1
scaffold_7	alt_acceptor	41513	41514	+	asmbl_50415,asmbl_50416	none	STRG.8577.1,STRG.8577.2,Trinity_GG_4727_c0_g1_i1,Trinity_GG_4727_c0_g1_i2,blat.proc3829875.chain_1004	5	STRG.8577.3	1
scaffold_20	skipped_exon	1469616	1470058	-	asmbl_26505	none	STRG.22854.1,blat.proc3829897.chain_3657	2	STRG.22854.3,blat.proc3829897.chain_3659	2
scaffold_15	skipped_exon	15409791	15410185	+	asmbl_14721	none	STRG.18921.1	1	STRG.18921.2,STRG.18921.3,STRG.18921.9,blat.proc3829879.chain_3515,blat.proc3829879.chain_3517	5
scaffold_8	starts_in_intron	9868559	9868559	+	asmbl_52111	none	blat.proc3829875.chain_2698	1	STRG.10225.2,STRG.10225.5,blat.proc3829875.chain_2691,blat.proc3829875.chain_2692,blat.proc3829875.chain_2693,blat.proc3829875.chain_2694,blat.proc3829875.chain_2695,blat.proc3829875.chain_2697	8
scaffold_7	alt_donor	12650679	12650680	-	asmbl_50077	none	STRG.9370.3	1	STRG.9370.1,blat.proc3829891.chain_1618	2
scaffold_18	retained_intron	13649242	13649267	+	asmbl_21048	none	blat.proc3829881.chain_2743	1	STRG.21786.2	1
scaffold_1	alt_donor	6661723	6661724	+	asmbl_1834	none	STRG.451.2	1	STRG.451.1,blat.proc3829871.chain_492	2
scaffold_5	starts_in_intron	13878066	13878066	+	asmbl_44559,asmbl_44560	none	STRG.6605.2,blat.proc3829873.chain_2661,blat.proc3829873.chain_2662	3	STRG.6605.1,blat.proc3829873.chain_2663	2
scaffold_23	skipped_exon	5583740	5584093	+	asmbl_30881	none	STRG.25912.1,Trinity_GG_14263_c0_g1_i1,blat.proc3829883.chain_2728	3	STRG.25912.4	1
scaffold_4	retained_intron	5648812	5648953	-	asmbl_41353,asmbl_41355,asmbl_41371	none	STRG.4469.1,Trinity_GG_19533_c1_g1_i2,blat.proc3829889.chain_615,blat.proc3829889.chain_617,blat.proc3829889.chain_618	5	blat.proc3829889.chain_619	1
scaffold_19	ends_in_intron	3035452	3035452	-	asmbl_21288	none	STRG.21979.2,blat.proc3829897.chain_2659	2	STRG.21979.1	1
scaffold_17	retained_intron	8210415	8210546	-	asmbl_19126	none	blat.proc3829897.chain_1410	1	STRG.20431.1,blat.proc3829897.chain_1411	2
scaffold_14	retained_intron	11759003	11759212	-	asmbl_13513,asmbl_13514	none	STRG.17517.1,STRG.17517.3,Trinity_GG_26842_c0_g1_i2,blat.proc3829895.chain_2238	4	STRG.17517.2,Trinity_GG_26842_c0_g1_i1,blat.proc3829895.chain_2239	3
scaffold_11	alternate_exon	3852229	3852262	+	asmbl_5424	none	STRG.13490.2,Trinity_GG_7403_c0_g1_i2,blat.proc3829877.chain_1957	3	STRG.13490.1,Trinity_GG_7403_c0_g1_i3,blat.proc3829877.chain_1956	3
scaffold_13	retained_intron	2569792	2570318	+	asmbl_10607,asmbl_10608	none	Trinity_GG_8519_c0_g1_i8,Trinity_GG_8519_c1_g1_i1,blat.proc3829879.chain_190,blat.proc3829879.chain_194,blat.proc3829879.chain_196	5	STRG.15550.1,Trinity_GG_8519_c0_g1_i1,Trinity_GG_8519_c0_g1_i3,blat.proc3829879.chain_188,blat.proc3829879.chain_189,blat.proc3829879.chain_191,blat.proc3829879.chain_192,blat.proc3829879.chain_193,blat.proc3829879.chain_195	9
scaffold_13	alternate_exon	14485873	14485911	-	asmbl_10162	none	STRG.16490.2	1	STRG.16490.1	1
scaffold_2	retained_exon	14228449	14228452	-	asmbl_23601	none	blat.proc3829887.chain_2295	1	STRG.2415.1	1
scaffold_23	spliced_intron	5339139	5339871	-	asmbl_31628,asmbl_31632	none	STRG.25890.3,Trinity_GG_31478_c0_g1_i5,blat.proc3829899.chain_2982	3	STRG.25890.2,Trinity_GG_31478_c0_g1_i2,Trinity_GG_31478_c0_g1_i3,blat.proc3829899.chain_2977,blat.proc3829899.chain_2978	5
scaffold_12	ends_in_intron	2722049	2722049	+	asmbl_8480	none	blat.proc3829877.chain_3022	1	Trinity_GG_8024_c0_g1_i4,Trinity_GG_8024_c0_g1_i5,blat.proc3829877.chain_3017,blat.proc3829877.chain_3019	4
scaffold_13	alternate_exon	8215688	8216117	-	asmbl_9914	none	STRG.16099.2,Trinity_GG_26063_c1_g1_i1,blat.proc3829895.chain_887,blat.proc3829895.chain_888	4	STRG.16099.1	1
scaffold_1	alt_donor	11096238	11096239	+	asmbl_2047	none	Trinity_GG_451_c0_g1_i4	1	STRG.726.2	1
scaffold_1	alternate_exon	1324615	1324661	+	asmbl_1469	none	STRG.79.2	1	STRG.79.1,Trinity_GG_53_c0_g1_i1,blat.proc3829871.chain_98	3
scaffold_10	alt_acceptor	9427893	9427894	-	asmbl_3600	none	STRG.12677.2	1	STRG.12677.1,blat.proc3829893.chain_1189	2
scaffold_21	ends_in_intron	2946838	2946838	-	asmbl_27523	none	blat.proc3829899.chain_971	1	STRG.23903.1,STRG.23903.2,STRG.23903.3,Trinity_GG_30331_c0_g1_i1,Trinity_GG_30331_c0_g1_i3,blat.proc3829899.chain_969,blat.proc3829899.chain_970	7
scaffold_7	starts_in_intron	9738103	9738103	-	asmbl_49871	none	blat.proc3829891.chain_1388	1	STRG.9155.1,blat.proc3829891.chain_1389	2
scaffold_8	spliced_intron	7984216	7984342	-	asmbl_52929	none	STRG.10087.1,blat.proc3829891.chain_2251,blat.proc3829891.chain_2252	3	blat.proc3829891.chain_2250	1
scaffold_8	starts_in_intron	17853168	17853168	+	asmbl_52511	none	Trinity_GG_5911_c0_g1_i1,blat.proc3829875.chain_3138	2	STRG.10688.1,STRG.10688.2,Trinity_GG_5911_c0_g1_i2,blat.proc3829875.chain_3137	4
scaffold_21	spliced_intron	10098326	10098427	+	asmbl_28868	none	STRG.24457.3	1	STRG.24457.1,STRG.24457.2	2
scaffold_5	retained_intron	12915260	12915370	-	asmbl_45873	none	blat.proc3829889.chain_2570	1	STRG.6515.1,STRG.6515.2,blat.proc3829889.chain_2568,blat.proc3829889.chain_2569	4
scaffold_11	alt_donor	17208734	17208735	-	asmbl_7233	none	STRG.14375.1,blat.proc3829893.chain_2783	2	STRG.14375.2,blat.proc3829893.chain_2785	2
scaffold_6	alternate_exon	8579531	8581115	+	asmbl_47089	none	blat.proc3829875.chain_111	1	STRG.7732.4	1
scaffold_7	alt_acceptor	18580188	18580189	+	asmbl_51415	none	STRG.9663.1,blat.proc3829875.chain_2123	2	STRG.9663.2	1
scaffold_4	alt_acceptor	3384083	3384084	+	asmbl_42514,asmbl_42518,asmbl_42519,asmbl_42520	none	STRG.4269.2,STRG.4269.3,blat.proc3829873.chain_584,blat.proc3829873.chain_585,blat.proc3829873.chain_587	5	STRG.4269.1,blat.proc3829873.chain_586	2
scaffold_13	spliced_intron	16460036	16460303	-	asmbl_10278	none	STRG.16689.5	1	STRG.16689.2,blat.proc3829895.chain_1356	2
scaffold_5	spliced_intron	6708613	6708819	-	asmbl_45516,asmbl_45517	none	STRG.6069.2,Trinity_GG_20388_c0_g1_i1,Trinity_GG_20388_c0_g1_i2,blat.proc3829889.chain_2074,blat.proc3829889.chain_2075	5	STRG.6069.1,blat.proc3829889.chain_2076	2
scaffold_2	starts_in_intron	7216136	7216136	+	asmbl_24570,asmbl_24578	none	STRG.2054.5,Trinity_GG_1174_c0_g1_i4,Trinity_GG_1174_c0_g1_i9,blat.proc3829871.chain_2147,blat.proc3829871.chain_2149	5	STRG.2054.1,STRG.2054.2,STRG.2054.4,Trinity_GG_1174_c0_g1_i3,Trinity_GG_1174_c0_g1_i7,blat.proc3829871.chain_2146,blat.proc3829871.chain_2150,blat.proc3829871.chain_2154	8
scaffold_19	retained_intron	8872484	8872914	-	asmbl_21524	none	blat.proc3829897.chain_3065	1	STRG.22329.1,blat.proc3829897.chain_3066	2
scaffold_24	alt_acceptor	9073111	9073112	+	asmbl_32495,asmbl_32499,asmbl_32501	none	STRG.26929.1,Trinity_GG_14897_c0_g1_i2,Trinity_GG_14897_c0_g1_i6,Trinity_GG_14897_c0_g1_i8,blat.proc3829885.chain_73,blat.proc3829885.chain_74,blat.proc3829885.chain_77	7	STRG.26929.2,Trinity_GG_14897_c0_g1_i9,blat.proc3829885.chain_71	3
scaffold_10	spliced_intron	14680476	14680668	+	asmbl_4918	none	Trinity_GG_7160_c0_g1_i2,blat.proc3829877.chain_1567	2	STRG.12999.1,Trinity_GG_7160_c0_g1_i1,Trinity_GG_7160_c0_g1_i3,blat.proc3829877.chain_1565,blat.proc3829877.chain_1566	5
scaffold_18	starts_in_intron	8152972	8152972	-	asmbl_20034	none	blat.proc3829897.chain_2338	1	STRG.21495.1,STRG.21495.2,blat.proc3829897.chain_2339,blat.proc3829897.chain_2340	4
scaffold_6	alt_acceptor	8172945	8172946	-	asmbl_48475	none	STRG.7691.1,blat.proc3829889.chain_3719	2	Trinity_GG_21366_c0_g1_i3,blat.proc3829889.chain_3717	2
scaffold_21	retained_intron	5110609	5110692	-	asmbl_27631	none	blat.proc3829899.chain_1100	1	STRG.24033.1,blat.proc3829899.chain_1099	2
scaffold_6	ends_in_intron	4962095	4962095	-	asmbl_48318	none	blat.proc3829889.chain_3477	1	blat.proc3829889.chain_3481	1
scaffold_4	skipped_exon	17129157	17130325	-	asmbl_42007	none	STRG.5313.1,blat.proc3829889.chain_1385	2	STRG.5313.2,Trinity_GG_19982_c0_g1_i3	2
scaffold_22	spliced_intron	11731907	11731990	+	asmbl_29713	none	Trinity_GG_14080_c0_g1_i1	1	Trinity_GG_14080_c0_g1_i2	1
scaffold_9	alt_donor	17470145	17470146	-	asmbl_55609	none	STRG.11832.3,blat.proc3829893.chain_238	2	STRG.11832.2	1
scaffold_12	retained_intron	4623882	4625218	-	asmbl_7560	none	STRG.14634.2,Trinity_GG_25176_c0_g1_i3,Trinity_GG_25176_c2_g1_i1,blat.proc3829893.chain_3035,blat.proc3829893.chain_3037	5	STRG.14634.1,STRG.14634.3	2
scaffold_4	alternate_exon	8991066	8991360	-	asmbl_41536,asmbl_41540	none	STRG.4717.1,STRG.4717.3,blat.proc3829889.chain_759	3	STRG.4717.5	1
scaffold_5	ends_in_intron	11803095	11803095	+	asmbl_44431	none	blat.proc3829873.chain_2455	1	STRG.6430.1	1
scaffold_11	alternate_exon	14128562	14128589	-	asmbl_7133	none	blat.proc3829893.chain_2611	1	STRG.14222.1,blat.proc3829893.chain_2613	2
scaffold_25	alt_acceptor	7220041	7220042	-	asmbl_34363	none	STRG.27562.2	1	STRG.27562.1,blat.proc3829901.chain_878,blat.proc3829901.chain_879	3
scaffold_17	spliced_intron	8880820	8880901	+	asmbl_18166	none	STRG.20493.1,blat.proc3829881.chain_1216	2	blat.proc3829881.chain_1217	1
scaffold_1352	retained_intron	1914	2398	+	asmbl_11694	none	STRG.30567.2	1	STRG.30567.1	1
scaffold_2	retained_exon	888816	888917	+	asmbl_24153	none	blat.proc3829871.chain_1550	1	blat.proc3829871.chain_1547	1
scaffold_500	alt_acceptor	1624	1625	+	asmbl_46444	none	blat.proc3829885.chain_3366,blat.proc3829885.chain_3369	2	blat.proc3829885.chain_3367	1
scaffold_4	alternate_exon	8622023	8622064	-	asmbl_41519	none	STRG.4679.1,blat.proc3829889.chain_739,blat.proc3829889.chain_740	3	blat.proc3829889.chain_741	1
scaffold_1	skipped_exon	12545033	12545421	-	asmbl_736,asmbl_738	none	STRG.867.1,STRG.867.2,blat.proc3829887.chain_663	3	blat.proc3829887.chain_662	1
scaffold_14	alternate_exon	8217585	8217649	-	asmbl_13240	none	STRG.17218.1	1	STRG.17218.2,STRG.17218.3,Trinity_GG_26673_c0_g1_i5,blat.proc3829895.chain_1928,blat.proc3829895.chain_1929,blat.proc3829895.chain_1931,blat.proc3829895.chain_1932	7
scaffold_15	skipped_exon	6956898	6957133	-	asmbl_15290,asmbl_15291	none	STRG.18291.1,blat.proc3829895.chain_3051,blat.proc3829895.chain_3053	3	STRG.18291.2,blat.proc3829895.chain_3052	2
scaffold_25	alt_acceptor	4439960	4439961	+	asmbl_33498	none	STRG.27356.4	1	STRG.27356.1,STRG.27356.2,STRG.27356.3,Trinity_GG_15095_c0_g1_i1,Trinity_GG_15095_c0_g1_i2,Trinity_GG_15095_c0_g1_i3,blat.proc3829885.chain_403,blat.proc3829885.chain_404,blat.proc3829885.chain_405	9
scaffold_15	starts_in_intron	13261644	13261644	-	asmbl_15642	none	blat.proc3829895.chain_3428	1	STRG.18757.1,blat.proc3829895.chain_3429	2
scaffold_12	spliced_intron	15204227	15204314	+	asmbl_9074	none	STRG.15305.2,Trinity_GG_8386_c0_g1_i2,blat.proc3829877.chain_3671	3	STRG.15305.1,Trinity_GG_8386_c0_g1_i1,blat.proc3829877.chain_3672	3
scaffold_14	starts_in_intron	6645747	6645747	-	asmbl_13124	none	STRG.17095.2	1	STRG.17095.1,STRG.17095.3	2
scaffold_23	alt_acceptor	7231452	7231453	+	asmbl_30979	none	STRG.26027.1	1	STRG.26027.2,STRG.26027.3	2
scaffold_12	retained_intron	14944862	14945190	-	asmbl_8148	none	Trinity_GG_25558_c0_g1_i3,blat.proc3829893.chain_3717	2	STRG.15269.1,STRG.15269.2,Trinity_GG_25558_c0_g1_i1,Trinity_GG_25558_c0_g1_i2,blat.proc3829893.chain_3715,blat.proc3829893.chain_3716	6
scaffold_11	skipped_exon	2101081	2101441	-	asmbl_6451,asmbl_6453	none	STRG.13364.1,blat.proc3829893.chain_1824,blat.proc3829893.chain_1827	3	STRG.13364.3,blat.proc3829893.chain_1826	2
scaffold_4	alternate_exon	16314744	16315361	+	asmbl_43301	none	STRG.5205.1	1	STRG.5205.3,STRG.5205.4,blat.proc3829873.chain_1510,blat.proc3829873.chain_1511	4
scaffold_4	retained_intron	19357212	19357317	-	asmbl_42185,asmbl_42188,asmbl_42189	none	STRG.5528.1,blat.proc3829889.chain_1612,blat.proc3829889.chain_1613	3	blat.proc3829889.chain_1609,blat.proc3829889.chain_1617	2
scaffold_1	retained_intron	18357390	18357458	+	asmbl_2544	none	STRG.1282.1,Trinity_GG_721_c0_g1_i2,blat.proc3829871.chain_1288	3	STRG.1282.2	1
scaffold_15	retained_intron	2730568	2730589	-	asmbl_15044	none	STRG.18046.1,Trinity_GG_27127_c0_g1_i1,Trinity_GG_27127_c0_g1_i2	3	blat.proc3829895.chain_2720,blat.proc3829895.chain_2721	2
scaffold_8	retained_intron	16398423	16398835	-	asmbl_53397,asmbl_53398	none	blat.proc3829891.chain_2689,blat.proc3829891.chain_2691	2	STRG.10619.1,STRG.10619.2,blat.proc3829891.chain_2683,blat.proc3829891.chain_2684,blat.proc3829891.chain_2685,blat.proc3829891.chain_2686,blat.proc3829891.chain_2687,blat.proc3829891.chain_2688	8
scaffold_13	retained_intron	16006876	16007020	-	asmbl_10229	none	Trinity_GG_26307_c0_g1_i1,blat.proc3829895.chain_1312	2	STRG.16631.1	1
scaffold_8	starts_in_intron	11851757	11851757	+	asmbl_52267	none	blat.proc3829875.chain_2981	1	STRG.10382.2,STRG.10382.3,blat.proc3829875.chain_2966,blat.proc3829875.chain_2967,blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970,blat.proc3829875.chain_2971,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2975,blat.proc3829875.chain_2976,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978,blat.proc3829875.chain_2979,blat.proc3829875.chain_2980	16
scaffold_19	spliced_intron	13154957	13155027	-	asmbl_21823	none	STRG.22626.2,blat.proc3829897.chain_3410	2	STRG.22626.3,blat.proc3829897.chain_3408	2
scaffold_21	retained_intron	7009648	7009840	-	asmbl_27801	none	blat.proc3829899.chain_1274	1	STRG.24222.1,STRG.24222.2,blat.proc3829899.chain_1273,blat.proc3829899.chain_1275	4
scaffold_26	skipped_exon	3178424	3179728	-	asmbl_34748	none	STRG.27993.1,blat.proc3829901.chain_1222	2	STRG.27993.2,blat.proc3829901.chain_1223	2
scaffold_25	spliced_intron	6302449	6302790	+	asmbl_33606,asmbl_33607,asmbl_33608,asmbl_33610,asmbl_33611	none	STRG.27516.1,blat.proc3829885.chain_469,blat.proc3829885.chain_470,blat.proc3829885.chain_471,blat.proc3829885.chain_472,blat.proc3829885.chain_473,blat.proc3829885.chain_474	7	blat.proc3829885.chain_464,blat.proc3829885.chain_465	2
scaffold_1	retained_intron	18487756	18487955	-	asmbl_1109	none	Trinity_GG_17723_c1_g1_i1,blat.proc3829887.chain_1213	2	STRG.1300.2,STRG.1300.3,STRG.1300.4,STRG.1300.5,blat.proc3829887.chain_1208,blat.proc3829887.chain_1209,blat.proc3829887.chain_1210,blat.proc3829887.chain_1211,blat.proc3829887.chain_1212	9
scaffold_6	ends_in_intron	3520081	3520081	+	asmbl_46791	none	Trinity_GG_4036_c0_g1_i1,blat.proc3829873.chain_3485	2	STRG.7355.1,STRG.7355.2	2
scaffold_14	alternate_exon	11246670	11249095	-	asmbl_13444,asmbl_13445,asmbl_13447,asmbl_13448	none	STRG.17444.1,STRG.17444.3,STRG.17444.4,blat.proc3829895.chain_2125,blat.proc3829895.chain_2126	5	STRG.17444.2	1
scaffold_28	retained_intron	5391382	5391483	+	asmbl_38280	none	STRG.29664.4	1	STRG.29664.1,STRG.29664.2,Trinity_GG_16450_c0_g1_i2,Trinity_GG_16450_c0_g1_i9,blat.proc3829885.chain_2784,blat.proc3829885.chain_2787	6
scaffold_9	starts_in_intron	7873314	7873314	+	asmbl_54135	none	blat.proc3829875.chain_3743	1	STRG.11217.1,blat.proc3829875.chain_3744	2
scaffold_15	alt_acceptor	12391906	12391907	-	asmbl_15591,asmbl_15592	none	STRG.18686.2,STRG.18686.3	2	STRG.18686.4,STRG.18686.5	2
scaffold_11	alt_acceptor	6396019	6396020	-	asmbl_6685,asmbl_6686	none	STRG.13685.3,STRG.13685.4	2	STRG.13685.1,STRG.13685.2,Trinity_GG_24659_c0_g1_i2,Trinity_GG_24659_c0_g1_i3,blat.proc3829893.chain_2111,blat.proc3829893.chain_2113	6
scaffold_4	alt_acceptor	11075490	11075491	+	asmbl_43033	none	STRG.4827.2,Trinity_GG_2673_c0_g1_i2,blat.proc3829873.chain_1144	3	STRG.4827.1,Trinity_GG_2673_c0_g1_i1,blat.proc3829873.chain_1145	3
scaffold_6	alt_donor	600601	600602	-	asmbl_47993,asmbl_47994	none	STRG.7116.2,STRG.7116.3	2	STRG.7116.1,STRG.7116.4,STRG.7116.5,blat.proc3829889.chain_3098,blat.proc3829889.chain_3099	5
scaffold_2	retained_intron	5440602	5440687	+	asmbl_24444	none	STRG.1951.1,blat.proc3829871.chain_1990	2	STRG.1951.2,blat.proc3829871.chain_1988	2
scaffold_19	alt_donor	8731821	8731822	-	asmbl_21513	none	STRG.22308.2	1	STRG.22308.1,blat.proc3829897.chain_2939	2
scaffold_18	spliced_intron	8726003	8726193	+	asmbl_20883,asmbl_20887	none	STRG.21533.1,blat.proc3829881.chain_2482,blat.proc3829881.chain_2483	3	STRG.21533.3,STRG.21533.5,STRG.21533.6,Trinity_GG_11882_c0_g1_i2,blat.proc3829881.chain_2486,blat.proc3829881.chain_2487,blat.proc3829881.chain_2488	7
scaffold_25	alt_acceptor	4588480	4588481	-	asmbl_34197	none	STRG.27378.2	1	STRG.27378.1,STRG.27378.3,blat.proc3829901.chain_650,blat.proc3829901.chain_651	4
scaffold_13	alternate_exon	6048409	6048724	-	asmbl_9724	none	STRG.15900.5,blat.proc3829895.chain_625	2	STRG.15900.4,blat.proc3829895.chain_629	2
scaffold_20	spliced_intron	9656219	9656254	+	asmbl_26035	none	STRG.23495.1	1	Trinity_GG_12937_c0_g1_i3,Trinity_GG_12937_c0_g1_i4,blat.proc3829883.chain_516,blat.proc3829883.chain_517	4
scaffold_16	alternate_exon	813990	814299	-	asmbl_16084,asmbl_16087	none	STRG.19048.2,STRG.19048.3,blat.proc3829897.chain_1	3	STRG.19048.1	1
scaffold_15	spliced_intron	2564009	2564591	+	asmbl_14006,asmbl_14008	none	STRG.18036.3,Trinity_GG_9908_c0_g1_i9	2	STRG.18036.4	1
scaffold_9	retained_intron	3711582	3711674	-	asmbl_54895	none	STRG.10975.1,Trinity_GG_23095_c0_g1_i1,blat.proc3829891.chain_3133	3	STRG.10975.2,Trinity_GG_23095_c0_g1_i2,blat.proc3829891.chain_3132	3
scaffold_18	retained_exon	4768038	4768115	+	asmbl_20585,asmbl_20589	none	STRG.21260.1,STRG.21260.2,Trinity_GG_11674_c0_g1_i1,blat.proc3829881.chain_2085,blat.proc3829881.chain_2087,blat.proc3829881.chain_2088	6	STRG.21260.3,STRG.21260.5	2
scaffold_14	starts_in_intron	13224607	13224607	+	asmbl_12446	none	Trinity_GG_9625_c1_g1_i1,blat.proc3829879.chain_2208	2	STRG.17600.4,blat.proc3829879.chain_2205	2
scaffold_5	spliced_intron	15765637	15765727	+	asmbl_44677,asmbl_44682,asmbl_44684	none	STRG.6763.1,blat.proc3829873.chain_2877,blat.proc3829873.chain_2880,blat.proc3829873.chain_2882	4	blat.proc3829873.chain_2874,blat.proc3829873.chain_2875,blat.proc3829873.chain_2876	3
scaffold_16	alternate_exon	8638543	8641078	+	asmbl_17226,asmbl_17227,asmbl_17228	none	STRG.19479.1,STRG.19479.3,STRG.19479.5,Trinity_GG_10677_c0_g1_i4,blat.proc3829881.chain_361,blat.proc3829881.chain_362,blat.proc3829881.chain_363	7	STRG.19479.4	1
scaffold_18	retained_exon	3917647	3918211	-	asmbl_19819	none	blat.proc3829897.chain_2089	1	STRG.21192.5	1
scaffold_8	retained_intron	16501765	16501850	-	asmbl_53412,asmbl_53418	none	Trinity_GG_22960_c0_g1_i7,blat.proc3829891.chain_2860,blat.proc3829891.chain_2861	3	STRG.10621.1,STRG.10621.2,STRG.10621.3,STRG.10621.4,STRG.10621.5,Trinity_GG_22960_c0_g1_i18,Trinity_GG_22960_c0_g1_i19,Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2857,blat.proc3829891.chain_2859,blat.proc3829891.chain_2862,blat.proc3829891.chain_2863,blat.proc3829891.chain_2864,blat.proc3829891.chain_2865,blat.proc3829891.chain_2867,blat.proc3829891.chain_2868,blat.proc3829891.chain_2869,blat.proc3829891.chain_2870,blat.proc3829891.chain_2871,blat.proc3829891.chain_2872	24
scaffold_25	spliced_intron	3095414	3095695	-	asmbl_34074,asmbl_34075,asmbl_34076	none	STRG.27230.1,STRG.27230.2,STRG.27230.3,Trinity_GG_32229_c2_g1_i1,blat.proc3829901.chain_497	5	blat.proc3829901.chain_496	1
scaffold_18	spliced_intron	852034	852150	-	asmbl_19638,asmbl_19640	none	STRG.21004.1,blat.proc3829897.chain_1915,blat.proc3829897.chain_1918	3	blat.proc3829897.chain_1917	1
scaffold_5	retained_exon	11990896	11990961	-	asmbl_45811,asmbl_45812,asmbl_45813,asmbl_45816	none	STRG.6447.1,STRG.6447.3,STRG.6447.4,blat.proc3829889.chain_2519,blat.proc3829889.chain_2520,blat.proc3829889.chain_2521	6	STRG.6447.5	1
scaffold_14	spliced_intron	12824418	12824705	-	asmbl_13598,asmbl_13599,asmbl_13600	none	STRG.17589.1,STRG.17589.2,STRG.17589.4,blat.proc3829895.chain_2338,blat.proc3829895.chain_2339	5	blat.proc3829895.chain_2340	1
scaffold_5	retained_intron	4866436	4866834	+	asmbl_43973,asmbl_43974	none	STRG.5938.3,Trinity_GG_3273_c0_g1_i2,blat.proc3829873.chain_2134,blat.proc3829873.chain_2135	4	blat.proc3829873.chain_2136	1
scaffold_11	alt_acceptor	2855116	2855117	+	asmbl_5348	none	STRG.13407.2	1	STRG.13407.1,Trinity_GG_7321_c0_g1_i3,blat.proc3829877.chain_1816	3
scaffold_7	alternate_exon	18773276	18773417	-	asmbl_50323,asmbl_50324	none	STRG.9684.4,blat.proc3829891.chain_1880	2	blat.proc3829891.chain_1876,blat.proc3829891.chain_1879	2
scaffold_5	alternate_exon	15549339	15549985	-	asmbl_46077	none	STRG.6737.1,blat.proc3829889.chain_2776	2	STRG.6737.2,STRG.6737.3	2
scaffold_2	ends_in_intron	15458486	15458486	-	asmbl_23643	none	STRG.2502.1	1	Trinity_GG_18366_c0_g1_i2,blat.proc3829887.chain_2315	2
scaffold_14	ends_in_intron	149958	149958	-	asmbl_12758,asmbl_12760,asmbl_12763	none	Trinity_GG_26353_c0_g1_i1,Trinity_GG_26353_c0_g1_i4,blat.proc3829895.chain_1386,blat.proc3829895.chain_1387,blat.proc3829895.chain_1388	5	STRG.16700.2,blat.proc3829895.chain_1383,blat.proc3829895.chain_1384,blat.proc3829895.chain_1385	4
scaffold_13	retained_intron	4458561	4458799	+	asmbl_10773	none	STRG.15755.2,blat.proc3829879.chain_450	2	STRG.15755.1,Trinity_GG_8663_c0_g1_i6,blat.proc3829879.chain_451,blat.proc3829879.chain_452	4
scaffold_10	ends_in_intron	1490983	1490983	-	asmbl_2979	none	Trinity_GG_23657_c0_g1_i7,blat.proc3829893.chain_391	2	STRG.12017.2,blat.proc3829893.chain_390,blat.proc3829893.chain_392	3
scaffold_3	retained_intron	18372738	18372846	-	asmbl_39567	none	blat.proc3829889.chain_36	1	STRG.4050.1	1
scaffold_25	spliced_intron	6302876	6303091	+	asmbl_33606,asmbl_33607,asmbl_33608,asmbl_33610,asmbl_33611,asmbl_33612,asmbl_33613	none	STRG.27516.1,blat.proc3829885.chain_464,blat.proc3829885.chain_467,blat.proc3829885.chain_469,blat.proc3829885.chain_470,blat.proc3829885.chain_471,blat.proc3829885.chain_472,blat.proc3829885.chain_473,blat.proc3829885.chain_474	9	blat.proc3829885.chain_465	1
scaffold_19	alt_donor	12580859	12580860	-	asmbl_21733	none	STRG.22575.2	1	STRG.22575.1	1
scaffold_1	spliced_intron	13537007	13537217	-	asmbl_825,asmbl_826,asmbl_828,asmbl_829	none	STRG.966.1,Trinity_GG_17468_c0_g1_i1,Trinity_GG_17468_c0_g1_i5,blat.proc3829887.chain_771,blat.proc3829887.chain_772,blat.proc3829887.chain_773,blat.proc3829887.chain_774	7	blat.proc3829887.chain_775	1
scaffold_16	ends_in_intron	6195479	6195479	+	asmbl_17086	none	blat.proc3829881.chain_124	1	STRG.19373.1,STRG.19373.2,STRG.19373.3,STRG.19373.4,blat.proc3829881.chain_125,blat.proc3829881.chain_126,blat.proc3829881.chain_127,blat.proc3829881.chain_128,blat.proc3829881.chain_129,blat.proc3829881.chain_130,blat.proc3829881.chain_131	11
scaffold_1	starts_in_intron	11571894	11571894	-	asmbl_644,asmbl_647	none	blat.proc3829887.chain_577,blat.proc3829887.chain_581	2	STRG.766.1,STRG.766.2,blat.proc3829887.chain_578,blat.proc3829887.chain_579	4
scaffold_26	ends_in_intron	5777498	5777498	-	asmbl_34900	none	blat.proc3829901.chain_1388	1	STRG.28270.1,blat.proc3829901.chain_1387,blat.proc3829901.chain_1389	3
scaffold_14	spliced_intron	4780275	4781266	-	asmbl_13051,asmbl_13054	none	STRG.16995.1,STRG.16995.2,blat.proc3829895.chain_1703	3	STRG.16995.3,STRG.16995.4,blat.proc3829895.chain_1702	3
scaffold_16	spliced_intron	810169	810259	-	asmbl_16077,asmbl_16081	none	STRG.19052.1,STRG.19052.3,blat.proc3829895.chain_3749	3	blat.proc3829895.chain_3746,blat.proc3829895.chain_3748	2
scaffold_28	spliced_intron	5755532	5756003	+	asmbl_38300	none	STRG.29691.1,Trinity_GG_16456_c0_g1_i1,blat.proc3829885.chain_2799	3	Trinity_GG_16456_c0_g2_i1,blat.proc3829885.chain_2801	2
scaffold_1	alt_acceptor	3270179	3270180	-	asmbl_139,asmbl_141	none	STRG.199.1,blat.proc3829887.chain_97,blat.proc3829887.chain_99	3	STRG.199.2	1
scaffold_5	skipped_exon	4688617	4690762	-	asmbl_45370,asmbl_45372,asmbl_45373,asmbl_45377,asmbl_45378,asmbl_45381,asmbl_45382	none	STRG.5919.1,STRG.5919.4,STRG.5919.6,blat.proc3829889.chain_2026,blat.proc3829889.chain_2028,blat.proc3829889.chain_2029,blat.proc3829889.chain_2032,blat.proc3829889.chain_2033,blat.proc3829889.chain_2035	9	blat.proc3829889.chain_2027,blat.proc3829889.chain_2030	2
scaffold_28	starts_in_intron	3840731	3840731	+	asmbl_38189	none	blat.proc3829885.chain_2699	1	STRG.29557.1,STRG.29557.2,blat.proc3829885.chain_2697,blat.proc3829885.chain_2700	4
scaffold_5	spliced_intron	8119952	8121390	-	asmbl_45582	none	STRG.6166.2,blat.proc3829889.chain_2242	2	STRG.6166.1,blat.proc3829889.chain_2241	2
scaffold_8	retained_exon	9128242	9128688	-	asmbl_53005,asmbl_53006	none	STRG.10161.3,STRG.10161.4	2	STRG.10161.2,blat.proc3829891.chain_2335,blat.proc3829891.chain_2336	3
scaffold_9	starts_in_intron	16657453	16657453	-	asmbl_55566	none	blat.proc3829893.chain_210	1	STRG.11803.1,STRG.11803.3,blat.proc3829893.chain_209	3
scaffold_3	alternate_exon	11975635	11978535	+	asmbl_40336	none	STRG.3621.1,Trinity_GG_2035_c0_g1_i2,Trinity_GG_2035_c2_g1_i1,blat.proc3829873.chain_21,blat.proc3829873.chain_25	5	Trinity_GG_2035_c0_g1_i3,blat.proc3829873.chain_22	2
scaffold_15	retained_intron	4815601	4815751	-	asmbl_15173	none	blat.proc3829895.chain_2919	1	STRG.18192.1,blat.proc3829895.chain_2916,blat.proc3829895.chain_2917,blat.proc3829895.chain_2918,blat.proc3829895.chain_2920	5
scaffold_10	spliced_intron	6447456	6447566	-	asmbl_3375	none	blat.proc3829893.chain_932	1	blat.proc3829893.chain_931,blat.proc3829893.chain_933	2
scaffold_5	alt_acceptor	11992233	11992234	-	asmbl_45811	none	STRG.6447.4,blat.proc3829889.chain_2519	2	STRG.6447.1,blat.proc3829889.chain_2521	2
scaffold_1	alt_acceptor	20755377	20755378	+	asmbl_2638	none	STRG.1421.2,blat.proc3829871.chain_1475	2	blat.proc3829871.chain_1474	1
scaffold_1	alt_acceptor	2119515	2119516	-	asmbl_112	none	STRG.139.2	1	STRG.139.1,blat.proc3829887.chain_47	2
scaffold_6	spliced_intron	6755355	6755511	-	asmbl_48404	none	blat.proc3829889.chain_3632	1	STRG.7580.1	1
scaffold_18	spliced_intron	2779711	2779799	-	asmbl_19777	none	STRG.21128.2,blat.proc3829897.chain_2037	2	STRG.21128.1,blat.proc3829897.chain_2036	2
scaffold_4	starts_in_intron	16952381	16952381	+	asmbl_43358	none	Trinity_GG_2929_c0_g1_i2	1	blat.proc3829873.chain_1563	1
scaffold_22	alternate_exon	6947403	6947437	+	asmbl_29431	none	STRG.24996.3	1	STRG.24996.1,Trinity_GG_13834_c0_g1_i1,blat.proc3829883.chain_2060	3
scaffold_10	alternate_exon	17004897	17005092	+	asmbl_5010,asmbl_5011	none	STRG.13136.1,STRG.13136.2,Trinity_GG_7232_c0_g1_i1,Trinity_GG_7232_c0_g1_i2,blat.proc3829877.chain_1665,blat.proc3829877.chain_1666	6	STRG.13136.3,STRG.13136.4	2
scaffold_27	spliced_intron	3624875	3625095	+	asmbl_36177,asmbl_36178	none	STRG.28811.1,Trinity_GG_15953_c0_g1_i2,blat.proc3829885.chain_1904,blat.proc3829885.chain_1905	4	Trinity_GG_15953_c0_g1_i4,Trinity_GG_15953_c0_g1_i6,blat.proc3829885.chain_1906,blat.proc3829885.chain_1907	4
scaffold_28	retained_exon	7746842	7747034	-	asmbl_37736	none	STRG.29822.1,blat.proc3829901.chain_2849	2	STRG.29822.2	1
scaffold_8	alt_acceptor	5435077	5435078	+	asmbl_51870,asmbl_51872,asmbl_51873	none	STRG.9965.2,blat.proc3829875.chain_2414,blat.proc3829875.chain_2415,blat.proc3829875.chain_2416	4	STRG.9965.1	1
scaffold_4	retained_intron	4433714	4433862	+	asmbl_42599	none	STRG.4341.1,blat.proc3829873.chain_731	2	STRG.4341.3	1
scaffold_5	ends_in_intron	4668057	4668057	-	asmbl_45364	none	STRG.5915.3,blat.proc3829889.chain_1996	2	STRG.5915.1,STRG.5915.2,blat.proc3829889.chain_1995	3
scaffold_9	ends_in_intron	9470713	9470713	-	asmbl_55143	none	Trinity_GG_23283_c0_g1_i9,blat.proc3829891.chain_3463	2	STRG.11298.1,STRG.11298.2,STRG.11298.3,blat.proc3829891.chain_3464,blat.proc3829891.chain_3465,blat.proc3829891.chain_3466	6
scaffold_7	alt_acceptor	7615900	7615901	-	asmbl_49764,asmbl_49765	none	STRG.9004.1,STRG.9004.3,Trinity_GG_22076_c0_g1_i1,Trinity_GG_22076_c0_g1_i2,blat.proc3829891.chain_1229,blat.proc3829891.chain_1230	6	STRG.9004.2,STRG.9004.4	2
scaffold_13	spliced_intron	2274573	2277261	-	asmbl_9401,asmbl_9406	none	STRG.15533.3,blat.proc3829895.chain_309,blat.proc3829895.chain_313	3	STRG.15533.2,blat.proc3829895.chain_310,blat.proc3829895.chain_311,blat.proc3829895.chain_317	4
scaffold_22	alternate_exon	8196111	8196198	+	asmbl_29559	none	STRG.25157.1	1	STRG.25157.2	1
scaffold_27	alt_donor	2997816	2997817	+	asmbl_36122	none	blat.proc3829885.chain_1841	1	STRG.28767.5,blat.proc3829885.chain_1839	2
scaffold_5	alt_acceptor	71229	71230	+	asmbl_43735,asmbl_43736	none	STRG.5568.1,STRG.5568.3	2	STRG.5568.2	1
scaffold_21	alt_acceptor	11272094	11272095	-	asmbl_28137,asmbl_28138,asmbl_28140,asmbl_28142	none	STRG.24588.1,blat.proc3829899.chain_1688,blat.proc3829899.chain_1689,blat.proc3829899.chain_1690,blat.proc3829899.chain_1691,blat.proc3829899.chain_1692,blat.proc3829899.chain_1695	7	STRG.24588.2	1
scaffold_27	alt_acceptor	2841516	2841517	+	asmbl_36092	none	blat.proc3829885.chain_1806	1	STRG.28746.1,blat.proc3829885.chain_1805	2
scaffold_1	alternate_exon	14421376	14422410	-	asmbl_925	none	blat.proc3829887.chain_937	1	STRG.1038.3	1
scaffold_22	ends_in_intron	7911060	7911060	+	asmbl_29525	none	blat.proc3829883.chain_2215	1	Trinity_GG_13930_c0_g1_i1,blat.proc3829883.chain_2213	2
scaffold_731	retained_intron	2273	2411	+	asmbl_51583	none	STRG.30421.1,Trinity_GG_16826_c0_g1_i1,blat.proc3829885.chain_3422	3	STRG.30421.2	1
scaffold_28	alt_donor	294106	294107	+	asmbl_37963,asmbl_37964	none	STRG.29243.2,blat.proc3829885.chain_2398	2	STRG.29243.1,blat.proc3829885.chain_2399	2
scaffold_6	alt_acceptor	18836629	18836630	+	asmbl_47803	none	STRG.8547.6	1	STRG.8547.1,STRG.8547.2,STRG.8547.3,STRG.8547.4,STRG.8547.5,Trinity_GG_4669_c0_g1_i6,blat.proc3829875.chain_887,blat.proc3829875.chain_888,blat.proc3829875.chain_889,blat.proc3829875.chain_890,blat.proc3829875.chain_891	11
scaffold_22	ends_in_intron	21224	21224	+	asmbl_29089	none	blat.proc3829883.chain_1671	1	blat.proc3829883.chain_1672	1
scaffold_58	spliced_intron	22910	23017	+	asmbl_46560	none	STRG.30059.2	1	STRG.30059.1,Trinity_GG_16625_c0_g1_i1,Trinity_GG_16644_c0_g1_i1,blat.proc3829885.chain_3094,blat.proc3829885.chain_3126	5
scaffold_17	spliced_intron	3839188	3839302	+	asmbl_17868,asmbl_17870	none	STRG.20133.1,blat.proc3829881.chain_937,blat.proc3829881.chain_939	3	blat.proc3829881.chain_938	1
scaffold_5	skipped_exon	10297479	10297866	-	asmbl_45725	none	STRG.6324.3	1	STRG.6324.1,STRG.6324.2,blat.proc3829889.chain_2410,blat.proc3829889.chain_2412	4
scaffold_19	retained_intron	5155289	5155678	+	asmbl_22159,asmbl_22160	none	STRG.22072.2,blat.proc3829881.chain_3012	2	STRG.22072.1,STRG.22072.3,blat.proc3829881.chain_3013,blat.proc3829881.chain_3014	4
scaffold_6	starts_in_intron	14644839	14644839	-	asmbl_48959	none	blat.proc3829891.chain_515	1	STRG.8222.1,blat.proc3829891.chain_516	2
scaffold_24	retained_intron	1064378	1064849	+	asmbl_32071	none	STRG.26360.1,Trinity_GG_14583_c0_g1_i1,Trinity_GG_14583_c0_g1_i4,blat.proc3829883.chain_3294,blat.proc3829883.chain_3296	5	STRG.26360.2,Trinity_GG_14583_c0_g1_i2,blat.proc3829883.chain_3293	3
scaffold_2	alt_donor	15460729	15460730	-	asmbl_23646	none	STRG.2494.1	1	Trinity_GG_18374_c0_g1_i1,blat.proc3829887.chain_2323	2
scaffold_6	alternate_exon	9710819	9711247	-	asmbl_48568	none	STRG.7811.1	1	STRG.7811.3,blat.proc3829889.chain_3742	2
scaffold_13	spliced_intron	2271676	2271815	-	asmbl_9400,asmbl_9401,asmbl_9402	none	STRG.15533.1,STRG.15533.2,STRG.15533.3,blat.proc3829895.chain_309,blat.proc3829895.chain_311,blat.proc3829895.chain_316	6	blat.proc3829895.chain_308,blat.proc3829895.chain_310,blat.proc3829895.chain_313,blat.proc3829895.chain_317	4
scaffold_22	spliced_intron	4345965	4346077	+	asmbl_29276	none	STRG.24835.3,blat.proc3829883.chain_1863	2	STRG.24835.2,blat.proc3829883.chain_1862	2
scaffold_16	alt_acceptor	10745589	10745590	+	asmbl_17357	none	STRG.19614.3	1	STRG.19614.1,STRG.19614.2,Trinity_GG_10748_c0_g1_i1,Trinity_GG_10748_c0_g1_i2,blat.proc3829881.chain_489,blat.proc3829881.chain_490	6
scaffold_1	retained_intron	20988978	20989300	+	asmbl_2658	none	STRG.1431.1,Trinity_GG_838_c0_g1_i2,blat.proc3829871.chain_1498	3	STRG.1431.3,Trinity_GG_838_c0_g1_i4,blat.proc3829871.chain_1500	3
scaffold_11	alt_donor	13092586	13092587	+	asmbl_6000,asmbl_6001,asmbl_6006,asmbl_6007	none	STRG.14176.1,STRG.14176.3,blat.proc3829877.chain_2671,blat.proc3829877.chain_2672,blat.proc3829877.chain_2674,blat.proc3829877.chain_2678	6	Trinity_GG_7823_c0_g1_i13,blat.proc3829877.chain_2668,blat.proc3829877.chain_2669,blat.proc3829877.chain_2675	4
scaffold_18	starts_in_intron	7866182	7866182	-	asmbl_20019	none	blat.proc3829897.chain_2328	1	STRG.21476.1,blat.proc3829897.chain_2330,blat.proc3829897.chain_2331	3
scaffold_20	spliced_intron	7806737	7806925	-	asmbl_26844,asmbl_26846	none	STRG.23317.1,Trinity_GG_30035_c0_g1_i1,Trinity_GG_30035_c0_g1_i2,blat.proc3829899.chain_371,blat.proc3829899.chain_372	5	Trinity_GG_30035_c0_g1_i3,blat.proc3829899.chain_370	2
scaffold_17	alt_donor	8318033	8318034	+	asmbl_18093,asmbl_18094,asmbl_18095,asmbl_18098,asmbl_18099,asmbl_18100	none	STRG.20443.1,STRG.20443.2,STRG.20443.3,blat.proc3829881.chain_1250,blat.proc3829881.chain_1251,blat.proc3829881.chain_1253	6	Trinity_GG_11211_c0_g1_i1,blat.proc3829881.chain_1249,blat.proc3829881.chain_1252	3
scaffold_7	alt_acceptor	13962753	13962754	+	asmbl_51279	none	blat.proc3829875.chain_1953	1	STRG.9485.1,STRG.9485.2,STRG.9485.3,Trinity_GG_5272_c0_g1_i1,Trinity_GG_5272_c0_g1_i2,blat.proc3829875.chain_1951,blat.proc3829875.chain_1952,blat.proc3829875.chain_1954	8
scaffold_5	ends_in_intron	15123409	15123409	-	asmbl_46032	none	Trinity_GG_20765_c0_g1_i2,blat.proc3829889.chain_2735	2	STRG.6696.1,blat.proc3829889.chain_2734	2
scaffold_25	retained_intron	5157955	5158103	-	asmbl_34229	none	blat.proc3829901.chain_748	1	STRG.27422.1,blat.proc3829901.chain_742,blat.proc3829901.chain_746,blat.proc3829901.chain_749	4
scaffold_9	retained_intron	571057	571248	+	asmbl_53751	none	STRG.10779.7	1	STRG.10779.3	1
scaffold_10	starts_in_intron	6911474	6911474	+	asmbl_4534	none	blat.proc3829877.chain_1027	1	STRG.12507.1,STRG.12507.2,blat.proc3829877.chain_1028	3
scaffold_1	alt_acceptor	12956816	12956817	+	asmbl_2269	none	STRG.926.3,blat.proc3829871.chain_1014	2	STRG.926.1,STRG.926.2,blat.proc3829871.chain_1015	3
scaffold_1	spliced_intron	10950971	10951077	+	asmbl_2025,asmbl_2027,asmbl_2028,asmbl_2030,asmbl_2031	none	STRG.713.1,STRG.713.2,STRG.713.3,blat.proc3829871.chain_749,blat.proc3829871.chain_750,blat.proc3829871.chain_751,blat.proc3829871.chain_752,blat.proc3829871.chain_753	8	STRG.713.4,blat.proc3829871.chain_748,blat.proc3829871.chain_754	3
scaffold_15	alternate_exon	15158446	15158596	+	asmbl_14667,asmbl_14668	none	blat.proc3829879.chain_3399,blat.proc3829879.chain_3402	2	STRG.18895.5	1
scaffold_12	ends_in_intron	7591248	7591248	-	asmbl_7728	none	Trinity_GG_25280_c0_g1_i2,blat.proc3829893.chain_3221	2	STRG.14825.2,blat.proc3829893.chain_3220	2
scaffold_11	spliced_intron	174383	174536	+	asmbl_5223,asmbl_5225,asmbl_5226	none	STRG.13233.1,blat.proc3829877.chain_1767,blat.proc3829877.chain_1768,blat.proc3829877.chain_1769	4	STRG.13233.2,blat.proc3829877.chain_1766	2
scaffold_10	alternate_exon	3760446	3760510	-	asmbl_3135	none	STRG.12200.3	1	STRG.12200.2	1
scaffold_1	retained_exon	12545144	12545270	-	asmbl_737	none	blat.proc3829887.chain_662	1	STRG.867.1,STRG.867.2,blat.proc3829887.chain_663	3
scaffold_25	alternate_exon	4818152	4818188	+	asmbl_33534	none	Trinity_GG_15069_c0_g1_i3,blat.proc3829885.chain_358	2	STRG.27398.4	1
scaffold_26	starts_in_intron	5483090	5483090	+	asmbl_35519,asmbl_35524	none	Trinity_GG_15611_c0_g1_i4,Trinity_GG_15611_c0_g1_i5,blat.proc3829885.chain_1257	3	STRG.28234.1,STRG.28234.2,STRG.28234.3,STRG.28234.4	4
scaffold_19	alt_acceptor	12822714	12822715	-	asmbl_21765	none	blat.proc3829897.chain_3280	1	STRG.22593.1,STRG.22593.2,STRG.22593.3,blat.proc3829897.chain_3274,blat.proc3829897.chain_3275,blat.proc3829897.chain_3278,blat.proc3829897.chain_3279	7
scaffold_2	retained_exon	13394140	13394233	-	asmbl_23526	none	STRG.2356.1,Trinity_GG_18330_c0_g1_i1,blat.proc3829887.chain_2245	3	STRG.2356.2	1
scaffold_22	ends_in_intron	231917	231917	-	asmbl_29841	none	Trinity_GG_30815_c0_g2_i1,blat.proc3829899.chain_1817	2	STRG.24671.2,Trinity_GG_30815_c0_g1_i3,Trinity_GG_30815_c0_g1_i5,blat.proc3829899.chain_1815,blat.proc3829899.chain_1816	5
scaffold_8	retained_intron	9586999	9587093	+	asmbl_52073	none	blat.proc3829875.chain_2711	1	STRG.10207.3,blat.proc3829875.chain_2709,blat.proc3829875.chain_2710,blat.proc3829875.chain_2713	4
scaffold_8	alt_acceptor	4824509	4824510	+	asmbl_51839	none	STRG.9937.1,blat.proc3829875.chain_2361	2	STRG.9937.2	1
scaffold_8	retained_intron	12807249	12807688	-	asmbl_53237,asmbl_53238	none	STRG.10465.1,blat.proc3829891.chain_2603,blat.proc3829891.chain_2604	3	STRG.10465.2	1
scaffold_7	alternate_exon	18394634	18394963	-	asmbl_50288,asmbl_50292,asmbl_50294,asmbl_50295,asmbl_50298,asmbl_50299	none	STRG.9659.1,STRG.9659.2,STRG.9659.3,STRG.9659.4,STRG.9659.5,Trinity_GG_22427_c0_g1_i10,blat.proc3829891.chain_1868,blat.proc3829891.chain_1870,blat.proc3829891.chain_1871	9	Trinity_GG_22427_c0_g1_i15,Trinity_GG_22427_c0_g1_i5,blat.proc3829891.chain_1867,blat.proc3829891.chain_1874	4
scaffold_24	skipped_exon	9119018	9119908	+	asmbl_32512,asmbl_32513,asmbl_32514,asmbl_32515,asmbl_32516	none	STRG.26927.1,blat.proc3829885.chain_101,blat.proc3829885.chain_102,blat.proc3829885.chain_104,blat.proc3829885.chain_97,blat.proc3829885.chain_98	6	Trinity_GG_14906_c0_g1_i3,blat.proc3829885.chain_100,blat.proc3829885.chain_99	3
scaffold_5	alt_acceptor	13023168	13023169	+	asmbl_44511	none	STRG.6522.1,blat.proc3829873.chain_2618	2	STRG.6522.3	1
scaffold_25	starts_in_intron	4597834	4597834	-	asmbl_34199	none	Trinity_GG_32355_c0_g1_i2	1	STRG.27382.1,Trinity_GG_32355_c0_g1_i1	2
scaffold_21	alt_acceptor	5279754	5279755	-	asmbl_27666	none	STRG.24056.2,blat.proc3829899.chain_1146	2	STRG.24056.3,STRG.24056.4,Trinity_GG_30438_c0_g1_i4,blat.proc3829899.chain_1148	4
scaffold_5	alternate_exon	989948	990044	-	asmbl_45198,asmbl_45200	none	STRG.5644.1,STRG.5644.3,blat.proc3829889.chain_1765	3	STRG.5644.2,STRG.5644.4,blat.proc3829889.chain_1764	3
scaffold_21	alt_donor	1286220	1286221	-	asmbl_27429	none	STRG.23793.2	1	STRG.23793.1,Trinity_GG_30267_c0_g1_i1,blat.proc3829899.chain_863	3
scaffold_11	starts_in_intron	17505221	17505221	-	asmbl_7252	none	blat.proc3829893.chain_2762	1	STRG.14397.1,Trinity_GG_25024_c0_g1_i2,blat.proc3829893.chain_2763	3
scaffold_9	alt_acceptor	7780591	7780592	+	asmbl_54123,asmbl_54126,asmbl_54128,asmbl_54130	none	blat.proc3829875.chain_3706,blat.proc3829875.chain_3709,blat.proc3829875.chain_3713,blat.proc3829875.chain_3714	4	blat.proc3829875.chain_3707	1
scaffold_1	starts_in_intron	6980078	6980078	+	asmbl_1867	none	Trinity_GG_313_c0_g1_i2,blat.proc3829871.chain_557	2	STRG.499.1,STRG.499.2,blat.proc3829871.chain_556,blat.proc3829871.chain_559	4
scaffold_21	starts_in_intron	27407	27407	-	asmbl_27291	none	Trinity_GG_30205_c0_g1_i3,blat.proc3829899.chain_723	2	STRG.23697.1,Trinity_GG_30205_c0_g1_i1,blat.proc3829899.chain_722	3
scaffold_7	alt_donor	9393024	9393025	+	asmbl_50962	none	STRG.9131.2,Trinity_GG_5073_c0_g1_i2,blat.proc3829875.chain_1600	3	STRG.9131.1,Trinity_GG_5073_c0_g1_i1,blat.proc3829875.chain_1601	3
scaffold_16	alt_donor	11767309	11767310	-	asmbl_16546	none	blat.proc3829897.chain_657	1	STRG.19688.1	1
scaffold_7	alt_donor	3954991	3954992	-	asmbl_49644,asmbl_49647,asmbl_49648	none	STRG.8791.2,blat.proc3829891.chain_1088,blat.proc3829891.chain_1090,blat.proc3829891.chain_1091	4	STRG.8791.1,blat.proc3829891.chain_1086,blat.proc3829891.chain_1089,blat.proc3829891.chain_1092,blat.proc3829891.chain_1093	5
scaffold_11	alt_donor	1862042	1862043	-	asmbl_6429	none	STRG.13334.1,blat.proc3829893.chain_1775	2	STRG.13334.2,blat.proc3829893.chain_1776	2
scaffold_20	alternate_exon	3259996	3260134	+	asmbl_25680	none	STRG.23041.3	1	STRG.23041.1,blat.proc3829883.chain_149	2
scaffold_16	ends_in_intron	9138526	9138526	-	asmbl_16447	none	blat.proc3829897.chain_519	1	STRG.19500.1,blat.proc3829897.chain_518	2
scaffold_2	spliced_intron	15271745	15272034	+	asmbl_25032,asmbl_25033,asmbl_25035,asmbl_25036,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25043,asmbl_25044,asmbl_25045	none	STRG.2481.1,blat.proc3829871.chain_2524,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2528,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2535,blat.proc3829871.chain_2536,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	12	blat.proc3829871.chain_2525	1
scaffold_13	ends_in_intron	2291586	2291586	+	asmbl_10557	none	blat.proc3829879.chain_260	1	STRG.15531.1	1
scaffold_17	spliced_intron	10050378	10050855	+	asmbl_18286	none	STRG.20609.1,blat.proc3829881.chain_1431	2	STRG.20609.2,Trinity_GG_11293_c0_g1_i5,blat.proc3829881.chain_1429,blat.proc3829881.chain_1430,blat.proc3829881.chain_1432	5
scaffold_3	spliced_intron	8162177	8162323	-	asmbl_38965	none	blat.proc3829887.chain_3140	1	blat.proc3829887.chain_3142	1
scaffold_23	starts_in_intron	1541485	1541485	-	asmbl_31377	none	blat.proc3829899.chain_2719	1	STRG.25612.1,STRG.25612.3,blat.proc3829899.chain_2717,blat.proc3829899.chain_2718	4
scaffold_6	starts_in_intron	18912154	18912154	-	asmbl_49221	none	blat.proc3829891.chain_883	1	STRG.8552.1,STRG.8552.2,blat.proc3829891.chain_884	3
scaffold_1	spliced_intron	5735051	5735263	+	asmbl_1758,asmbl_1759,asmbl_1762	none	STRG.380.1,STRG.380.2,STRG.380.3,blat.proc3829871.chain_443,blat.proc3829871.chain_446	5	blat.proc3829871.chain_442	1
scaffold_15	spliced_intron	7437135	7437261	-	asmbl_15319	none	STRG.18330.2,blat.proc3829895.chain_3102	2	STRG.18330.3,Trinity_GG_27324_c1_g1_i2,blat.proc3829895.chain_3101	3
scaffold_22	alt_donor	7439522	7439523	+	asmbl_29477	none	STRG.25067.3	1	STRG.25067.2,blat.proc3829883.chain_2138	2
scaffold_10	retained_exon	13002488	13002626	+	asmbl_4844	none	STRG.12901.1,blat.proc3829877.chain_1478	2	STRG.12901.2,blat.proc3829877.chain_1480	2
scaffold_4	starts_in_intron	1642812	1642812	+	asmbl_42450	none	Trinity_GG_2331_c0_g1_i1,blat.proc3829873.chain_537	2	STRG.4200.1,STRG.4200.2,Trinity_GG_2331_c0_g1_i2,blat.proc3829873.chain_538	4
scaffold_14	skipped_exon	9287370	9288497	-	asmbl_13354,asmbl_13356	none	STRG.17324.2,blat.proc3829895.chain_2044,blat.proc3829895.chain_2047,blat.proc3829895.chain_2048	4	STRG.17324.1,STRG.17324.3,STRG.17324.4,blat.proc3829895.chain_2043,blat.proc3829895.chain_2045,blat.proc3829895.chain_2046,blat.proc3829895.chain_2051,blat.proc3829895.chain_2052	8
scaffold_20	alternate_exon	8167486	8167664	+	asmbl_25904	none	STRG.23350.2	1	STRG.23350.3	1
scaffold_1	retained_intron	7814114	7814497	+	asmbl_1919	none	STRG.541.1,blat.proc3829871.chain_606	2	STRG.541.2,Trinity_GG_344_c0_g1_i2,blat.proc3829871.chain_605	3
scaffold_2	starts_in_intron	10674382	10674382	+	asmbl_24753	none	blat.proc3829871.chain_2332	1	STRG.2230.1,blat.proc3829871.chain_2333	2
scaffold_13	starts_in_intron	7423340	7423340	+	asmbl_11032	none	STRG.16020.2	1	STRG.16020.1,Trinity_GG_8813_c0_g1_i2,blat.proc3829879.chain_754	3
scaffold_6	alternate_exon	9909810	9910461	+	asmbl_47187	none	STRG.7827.3,Trinity_GG_4257_c1_g1_i1,blat.proc3829875.chain_131	3	STRG.7827.4	1
scaffold_4	starts_in_intron	4415495	4415495	+	asmbl_42573	none	Trinity_GG_2404_c2_g1_i1,blat.proc3829873.chain_700	2	STRG.4344.1,STRG.4344.2,STRG.4344.3,STRG.4344.4,Trinity_GG_2404_c0_g1_i10,Trinity_GG_2404_c0_g1_i14,Trinity_GG_2404_c0_g1_i19,Trinity_GG_2404_c0_g1_i5,Trinity_GG_2404_c0_g1_i8,blat.proc3829873.chain_680,blat.proc3829873.chain_681,blat.proc3829873.chain_682,blat.proc3829873.chain_683,blat.proc3829873.chain_685,blat.proc3829873.chain_686,blat.proc3829873.chain_687,blat.proc3829873.chain_688,blat.proc3829873.chain_689,blat.proc3829873.chain_690,blat.proc3829873.chain_691,blat.proc3829873.chain_692,blat.proc3829873.chain_695,blat.proc3829873.chain_696,blat.proc3829873.chain_697,blat.proc3829873.chain_698	25
scaffold_27	alt_donor	9156491	9156492	+	asmbl_36470	none	STRG.29146.1	1	STRG.29146.2	1
scaffold_15	retained_exon	15179226	15179284	+	asmbl_14678	none	STRG.18906.4	1	STRG.18906.1,STRG.18906.2,STRG.18906.3,blat.proc3829879.chain_3471,blat.proc3829879.chain_3472,blat.proc3829879.chain_3473,blat.proc3829879.chain_3474,blat.proc3829879.chain_3475,blat.proc3829879.chain_3476,blat.proc3829879.chain_3477,blat.proc3829879.chain_3478,blat.proc3829879.chain_3479,blat.proc3829879.chain_3480,blat.proc3829879.chain_3484,blat.proc3829879.chain_3485,blat.proc3829879.chain_3486,blat.proc3829879.chain_3487	17
scaffold_5	ends_in_intron	15119098	15119098	-	asmbl_46029	none	STRG.6695.2,Trinity_GG_20766_c0_g1_i2,blat.proc3829889.chain_2736	3	STRG.6695.1	1
scaffold_22	spliced_intron	4221540	4221851	-	asmbl_29977,asmbl_29978,asmbl_29979,asmbl_29980,asmbl_29986,asmbl_29988,asmbl_29990	none	STRG.24838.1,STRG.24838.2,STRG.24838.3,STRG.24838.4,blat.proc3829899.chain_1975,blat.proc3829899.chain_1976,blat.proc3829899.chain_1977	7	blat.proc3829899.chain_1978	1
scaffold_14	alt_acceptor	12325797	12325798	-	asmbl_13547,asmbl_13549	none	STRG.17544.1,blat.proc3829895.chain_2210,blat.proc3829895.chain_2211	3	STRG.17544.2	1
scaffold_8	spliced_intron	1801692	1801727	-	asmbl_52700	none	blat.proc3829875.chain_2240	1	STRG.9770.1,STRG.9770.2	2
scaffold_4	alt_acceptor	17162492	17162493	+	asmbl_43382	none	STRG.5317.1	1	STRG.5317.2	1
scaffold_16	starts_in_intron	290542	290542	+	asmbl_16802	none	Trinity_GG_10430_c0_g1_i2,blat.proc3829879.chain_3641	2	STRG.19012.1,STRG.19012.2,blat.proc3829879.chain_3638,blat.proc3829879.chain_3639,blat.proc3829879.chain_3640	5
scaffold_1	retained_intron	12788561	12788665	-	asmbl_769	none	STRG.898.2,blat.proc3829887.chain_770	2	STRG.898.1,STRG.898.3,blat.proc3829887.chain_767,blat.proc3829887.chain_769	4
scaffold_14	starts_in_intron	4252290	4252290	+	asmbl_11970	none	Trinity_GG_9343_c0_g1_i2,blat.proc3829879.chain_1708	2	STRG.16972.1,Trinity_GG_9343_c0_g1_i3,blat.proc3829879.chain_1709	3
scaffold_23	alt_donor	362407	362408	-	asmbl_31319	none	blat.proc3829899.chain_2649	1	STRG.25543.3,blat.proc3829899.chain_2656	2
scaffold_8	spliced_intron	8970436	8970848	-	asmbl_52976,asmbl_52977,asmbl_52980	none	STRG.10140.1,STRG.10140.2,blat.proc3829891.chain_2309,blat.proc3829891.chain_2311,blat.proc3829891.chain_2312	5	Trinity_GG_22678_c0_g2_i1,blat.proc3829891.chain_2313	2
scaffold_3	spliced_intron	17845439	17845779	+	asmbl_40664	none	STRG.4008.1,blat.proc3829873.chain_341	2	STRG.4008.4,blat.proc3829873.chain_343	2
scaffold_1	ends_in_intron	1620351	1620351	+	asmbl_1499	none	blat.proc3829871.chain_149	1	STRG.102.2,Trinity_GG_85_c0_g1_i1,Trinity_GG_85_c0_g1_i3,blat.proc3829871.chain_144,blat.proc3829871.chain_145	5
scaffold_11	spliced_intron	14587104	14587452	+	asmbl_6076,asmbl_6078	none	STRG.14246.2,blat.proc3829877.chain_2754	2	STRG.14246.3,blat.proc3829877.chain_2755	2
scaffold_10	alternate_exon	16252344	16258017	+	asmbl_4981	none	Trinity_GG_7185_c0_g1_i2,blat.proc3829877.chain_1597	2	STRG.13097.4	1
scaffold_12	alt_donor	7271987	7271988	+	asmbl_8697	none	STRG.14786.2,blat.proc3829877.chain_3284	2	STRG.14786.1,blat.proc3829877.chain_3283	2
scaffold_26	spliced_intron	6350817	6351171	-	asmbl_34952	none	STRG.28315.2,blat.proc3829901.chain_1403	2	STRG.28315.1,blat.proc3829901.chain_1401	2
scaffold_6	starts_in_intron	2908490	2908490	+	asmbl_46735	none	blat.proc3829873.chain_3369	1	blat.proc3829873.chain_3373	1
scaffold_6	retained_intron	15759616	15760387	-	asmbl_49020	none	STRG.8311.2	1	STRG.8311.1	1
scaffold_21	starts_in_intron	2622837	2622837	+	asmbl_28436	none	STRG.23882.2	1	STRG.23882.1,blat.proc3829883.chain_1032	2
scaffold_4	retained_intron	19354741	19354943	-	asmbl_42186,asmbl_42191	none	Trinity_GG_20122_c0_g1_i17,Trinity_GG_20122_c0_g1_i7,blat.proc3829889.chain_1616	3	STRG.5528.1,blat.proc3829889.chain_1605,blat.proc3829889.chain_1609,blat.proc3829889.chain_1612,blat.proc3829889.chain_1613,blat.proc3829889.chain_1615,blat.proc3829889.chain_1617	7
scaffold_20	starts_in_intron	12109267	12109267	+	asmbl_26266	none	Trinity_GG_13119_c0_g1_i1,blat.proc3829883.chain_832	2	STRG.23696.1,blat.proc3829883.chain_833,blat.proc3829883.chain_834	3
scaffold_7	alt_acceptor	1513365	1513366	+	asmbl_50491	none	STRG.8635.2	1	STRG.8635.1,Trinity_GG_4714_c0_g1_i1,blat.proc3829875.chain_989	3
scaffold_26	retained_exon	9843386	9843402	+	asmbl_35808,asmbl_35815,asmbl_35817	none	STRG.28526.1,blat.proc3829885.chain_1557,blat.proc3829885.chain_1559	3	STRG.28526.2,blat.proc3829885.chain_1563,blat.proc3829885.chain_1565	3
scaffold_24	skipped_exon	6432023	6432478	-	asmbl_32948	none	STRG.26677.2	1	STRG.26677.1,blat.proc3829899.chain_3722	2
scaffold_11	starts_in_intron	17503694	17503694	-	asmbl_7253	none	blat.proc3829893.chain_2755	1	STRG.14397.1,STRG.14397.2,Trinity_GG_25021_c0_g1_i1,blat.proc3829893.chain_2754	4
scaffold_11	alternate_exon	8373823	8373988	-	asmbl_6846	none	STRG.13838.1	1	STRG.13838.2	1
scaffold_15	starts_in_intron	4141527	4141527	-	asmbl_15141	none	blat.proc3829895.chain_2865	1	STRG.18146.1,blat.proc3829895.chain_2866	2
scaffold_7	retained_intron	5916256	5916585	-	asmbl_49716	none	Trinity_GG_22041_c1_g1_i1,blat.proc3829891.chain_1170	2	STRG.8887.1,STRG.8887.3,STRG.8887.4,STRG.8887.5,Trinity_GG_22041_c0_g1_i6,blat.proc3829891.chain_1163,blat.proc3829891.chain_1164,blat.proc3829891.chain_1165,blat.proc3829891.chain_1166	9
scaffold_3	retained_intron	10628351	10628697	+	asmbl_40236,asmbl_40237	none	blat.proc3829871.chain_3604,blat.proc3829871.chain_3606	2	STRG.3509.2,blat.proc3829871.chain_3605	2
scaffold_1	spliced_intron	5739912	5740071	+	asmbl_1764,asmbl_1768,asmbl_1769,asmbl_1770,asmbl_1771	none	STRG.382.2,blat.proc3829871.chain_370,blat.proc3829871.chain_371,blat.proc3829871.chain_372,blat.proc3829871.chain_373,blat.proc3829871.chain_375	6	Trinity_GG_223_c1_g1_i1,blat.proc3829871.chain_377	2
scaffold_20	alternate_exon	6975539	6975819	+	asmbl_25840,asmbl_25843	none	STRG.23248.2,blat.proc3829883.chain_382,blat.proc3829883.chain_383	3	STRG.23248.3	1
scaffold_11	alternate_exon	7673242	7673314	-	asmbl_6772,asmbl_6773	none	STRG.13764.2,STRG.13764.3	2	STRG.13764.1,blat.proc3829893.chain_2245	2
scaffold_24	skipped_exon	10132037	10134152	+	asmbl_32545	none	STRG.26962.1	1	STRG.26962.2,blat.proc3829885.chain_42	2
scaffold_6	alternate_exon	9911435	9915282	+	asmbl_47184	none	STRG.7827.4,Trinity_GG_4257_c0_g1_i1,Trinity_GG_4257_c0_g1_i2,blat.proc3829875.chain_129,blat.proc3829875.chain_130	5	STRG.7827.3,Trinity_GG_4257_c1_g1_i1,blat.proc3829875.chain_131	3
scaffold_11	spliced_intron	4666033	4666246	+	asmbl_5457,asmbl_5458,asmbl_5460	none	STRG.13546.2,STRG.13546.4,blat.proc3829877.chain_1979	3	blat.proc3829877.chain_1981,blat.proc3829877.chain_1982	2
scaffold_1	alt_donor	6907149	6907150	-	asmbl_412	none	blat.proc3829887.chain_398	1	STRG.484.1,blat.proc3829887.chain_399	2
scaffold_10	alt_acceptor	4050988	4050989	+	asmbl_4381,asmbl_4384	none	STRG.12236.1,Trinity_GG_6793_c1_g1_i1,Trinity_GG_6793_c1_g1_i2,blat.proc3829877.chain_911,blat.proc3829877.chain_912	5	STRG.12236.2	1
scaffold_5	spliced_intron	8413453	8414764	+	asmbl_44210,asmbl_44212	none	STRG.6180.2,STRG.6180.3,blat.proc3829873.chain_2249	3	STRG.6180.1,blat.proc3829873.chain_2248	2
scaffold_7	starts_in_intron	12446881	12446881	-	asmbl_50051	none	Trinity_GG_22282_c1_g1_i2,blat.proc3829891.chain_1615	2	STRG.9342.1,STRG.9342.2,STRG.9342.3,STRG.9342.4,Trinity_GG_22282_c1_g1_i12,Trinity_GG_22282_c1_g1_i4,Trinity_GG_22282_c1_g1_i7,blat.proc3829891.chain_1604,blat.proc3829891.chain_1605,blat.proc3829891.chain_1606,blat.proc3829891.chain_1607,blat.proc3829891.chain_1608,blat.proc3829891.chain_1609,blat.proc3829891.chain_1610,blat.proc3829891.chain_1611	15
scaffold_5	alternate_exon	18560636	18560742	+	asmbl_44923,asmbl_44924,asmbl_44927	none	STRG.6978.4,Trinity_GG_3847_c0_g1_i2,Trinity_GG_3847_c0_g1_i8,blat.proc3829873.chain_3146,blat.proc3829873.chain_3148	5	STRG.6978.1,STRG.6978.2,STRG.6978.3,blat.proc3829873.chain_3147,blat.proc3829873.chain_3150	5
scaffold_6	alt_donor	10483513	10483514	-	asmbl_48640	none	STRG.7880.1,blat.proc3829891.chain_156	2	STRG.7880.2,blat.proc3829891.chain_155	2
scaffold_5	spliced_intron	12269864	12269944	+	asmbl_44461	none	STRG.6455.1,blat.proc3829873.chain_2621	2	STRG.6455.2	1
scaffold_15	alt_donor	2990834	2990835	-	asmbl_15077	none	STRG.18069.1,blat.proc3829895.chain_2805	2	STRG.18069.3,blat.proc3829895.chain_2807	2
scaffold_13	retained_exon	9238672	9238827	+	asmbl_11164,asmbl_11165	none	STRG.16167.1,blat.proc3829879.chain_802,blat.proc3829879.chain_803	3	STRG.16167.2	1
scaffold_4	retained_exon	4897738	4897922	-	asmbl_41280	none	STRG.4380.1,blat.proc3829889.chain_481	2	STRG.4380.2,blat.proc3829889.chain_480	2
scaffold_4	ends_in_intron	6339830	6339830	+	asmbl_42732	none	blat.proc3829873.chain_818	1	STRG.4503.1,STRG.4503.2,blat.proc3829873.chain_819	3
scaffold_16	skipped_exon	439724	441814	-	asmbl_16038	none	STRG.19039.4	1	STRG.19039.1	1
scaffold_10	starts_in_intron	13472520	13472520	-	asmbl_3788,asmbl_3789	none	STRG.12931.1,STRG.12931.4,blat.proc3829893.chain_1415	3	STRG.12931.3	1
scaffold_9	spliced_intron	6284420	6284513	+	asmbl_54072	none	STRG.11158.1,blat.proc3829875.chain_3663	2	blat.proc3829875.chain_3664	1
scaffold_9	skipped_exon	361448	362689	+	asmbl_53737	none	STRG.10769.2,blat.proc3829875.chain_3273	2	STRG.10769.1,blat.proc3829875.chain_3272	2
scaffold_28	alt_donor	3732308	3732309	-	asmbl_37488,asmbl_37489,asmbl_37490,asmbl_37492	none	STRG.29558.1,STRG.29558.2,blat.proc3829901.chain_2659,blat.proc3829901.chain_2661,blat.proc3829901.chain_2662	5	blat.proc3829901.chain_2660,blat.proc3829901.chain_2663	2
scaffold_5	skipped_exon	15044005	15044293	-	asmbl_46017	none	Trinity_GG_20768_c0_g2_i1,blat.proc3829889.chain_2744	2	STRG.6692.2,STRG.6692.5,STRG.6692.7,STRG.6692.9	4
scaffold_24	retained_intron	2514768	2515066	+	asmbl_32111	none	STRG.26452.3,blat.proc3829883.chain_3353	2	STRG.26452.1,STRG.26452.2,blat.proc3829883.chain_3355	3
scaffold_18	retained_exon	7661995	7662112	+	asmbl_20794	none	STRG.21461.2	1	STRG.21461.1	1
scaffold_11	alt_acceptor	6139679	6139680	-	asmbl_6677	none	blat.proc3829893.chain_2100	1	STRG.13667.1,blat.proc3829893.chain_2099	2
scaffold_14	alt_donor	2850245	2850246	+	asmbl_11860	none	STRG.16869.1,Trinity_GG_9279_c0_g1_i1,blat.proc3829879.chain_1582	3	STRG.16869.2	1
scaffold_19	starts_in_intron	11523406	11523406	-	asmbl_21628,asmbl_21629	none	STRG.22476.2,STRG.22476.3,blat.proc3829897.chain_3124	3	STRG.22476.1,STRG.22476.4,blat.proc3829897.chain_3123	3
scaffold_13	ends_in_intron	5840622	5840622	-	asmbl_9693	none	Trinity_GG_25903_c0_g1_i4,blat.proc3829895.chain_570	2	STRG.15879.1,blat.proc3829895.chain_571,blat.proc3829895.chain_572,blat.proc3829895.chain_573	4
scaffold_25	starts_in_intron	6318457	6318457	-	asmbl_34327	none	blat.proc3829901.chain_845	1	STRG.27495.2	1
scaffold_21	retained_intron	5594719	5594820	-	asmbl_27707	none	Trinity_GG_30435_c0_g1_i1,blat.proc3829899.chain_1141	2	STRG.24077.1,blat.proc3829899.chain_1140	2
scaffold_7	alt_acceptor	5224680	5224681	+	asmbl_50678	none	STRG.8851.1,blat.proc3829875.chain_1264	2	STRG.8851.2	1
scaffold_24	skipped_exon	33655	34681	-	asmbl_32681	none	STRG.26300.6	1	Trinity_GG_31704_c0_g1_i1,blat.proc3829899.chain_3361	2
scaffold_7	spliced_intron	12277542	12278368	+	asmbl_51117,asmbl_51119	none	STRG.9315.1,blat.proc3829875.chain_1777,blat.proc3829875.chain_1779	3	blat.proc3829875.chain_1776	1
scaffold_9	alternate_exon	13606668	13607747	+	asmbl_54485	none	STRG.11636.3,Trinity_GG_6516_c1_g1_i1,blat.proc3829877.chain_427,blat.proc3829877.chain_429	4	STRG.11636.2,blat.proc3829877.chain_426	2
scaffold_17	retained_intron	3998821	3998969	+	asmbl_17881,asmbl_17883,asmbl_17885	none	STRG.20145.1,blat.proc3829881.chain_988,blat.proc3829881.chain_992	3	STRG.20145.2,STRG.20145.3,STRG.20145.4,blat.proc3829881.chain_989,blat.proc3829881.chain_990,blat.proc3829881.chain_991	6
scaffold_7	alt_donor	5183474	5183475	-	asmbl_49688,asmbl_49689	none	STRG.8845.1,STRG.8845.2,blat.proc3829891.chain_1159	3	STRG.8845.3	1
scaffold_26	ends_in_intron	6650783	6650783	-	asmbl_34966	none	blat.proc3829901.chain_1513	1	STRG.28335.1,STRG.28335.2,blat.proc3829901.chain_1511,blat.proc3829901.chain_1512	4
scaffold_14	alt_donor	2375411	2375412	-	asmbl_12917	none	blat.proc3829895.chain_1587	1	blat.proc3829895.chain_1581	1
scaffold_21	starts_in_intron	1046336	1046336	+	asmbl_28344	none	blat.proc3829883.chain_841	1	STRG.23775.1,STRG.23775.2,blat.proc3829883.chain_840,blat.proc3829883.chain_843,blat.proc3829883.chain_844	5
scaffold_7	retained_intron	12278830	12278991	+	asmbl_51119	none	blat.proc3829875.chain_1777	1	STRG.9315.1,blat.proc3829875.chain_1776,blat.proc3829875.chain_1779	3
scaffold_4	retained_exon	8989365	8989383	-	asmbl_41537	none	STRG.4717.5	1	STRG.4717.1,STRG.4717.2,STRG.4717.3,STRG.4717.4,blat.proc3829889.chain_759	5
scaffold_18	skipped_exon	12609003	12609670	-	asmbl_20185	none	STRG.21714.2,blat.proc3829897.chain_2527	2	STRG.21714.1	1
scaffold_1	alt_acceptor	4567214	4567215	-	asmbl_201,asmbl_204	none	STRG.277.1,STRG.277.2,blat.proc3829887.chain_136	3	STRG.277.3	1
scaffold_18	alt_acceptor	4690049	4690050	+	asmbl_20572	none	STRG.21247.2,blat.proc3829881.chain_2138	2	STRG.21247.1	1
scaffold_10	alternate_exon	11970269	11971461	+	asmbl_4791,asmbl_4794	none	blat.proc3829877.chain_1313,blat.proc3829877.chain_1322	2	STRG.12831.3	1
scaffold_24	alt_donor	4836511	4836512	+	asmbl_32219	none	blat.proc3829883.chain_3441	1	STRG.26593.1,blat.proc3829883.chain_3440	2
scaffold_4	alt_donor	19539878	19539879	-	asmbl_42201	none	STRG.5538.3	1	blat.proc3829889.chain_1601	1
scaffold_10	retained_exon	13914936	13915154	+	asmbl_4901	none	STRG.12970.1	1	STRG.12970.2	1
scaffold_8	alt_acceptor	2690453	2690454	+	asmbl_51725	none	STRG.9799.3	1	STRG.9799.1,STRG.9799.2	2
scaffold_22	retained_intron	3532808	3532917	-	asmbl_29940	none	Trinity_GG_30852_c0_g1_i1	1	STRG.24783.1	1
scaffold_2	spliced_intron	1301947	1302291	+	asmbl_24197	none	STRG.1611.1,Trinity_GG_927_c0_g1_i1,blat.proc3829871.chain_1707	3	STRG.1611.2,Trinity_GG_927_c0_g1_i4,blat.proc3829871.chain_1709	3
scaffold_13	spliced_intron	16138073	16138097	+	asmbl_11531	none	STRG.16640.1	1	STRG.16640.3	1
scaffold_23	retained_intron	4314274	4314425	+	asmbl_30798,asmbl_30799	none	Trinity_GG_14254_c0_g1_i7,blat.proc3829883.chain_2715	2	STRG.25826.1,Trinity_GG_14254_c0_g1_i1,blat.proc3829883.chain_2712,blat.proc3829883.chain_2713,blat.proc3829883.chain_2716	5
scaffold_17	alternate_exon	5691488	5691679	+	asmbl_17956	none	STRG.20260.3	1	STRG.20260.1,Trinity_GG_11101_c0_g1_i2,blat.proc3829881.chain_1065	3
scaffold_24	alt_donor	7099268	7099269	+	asmbl_32374	none	STRG.26741.2	1	STRG.26741.1	1
scaffold_12	spliced_intron	8828274	8828345	+	asmbl_8797	none	STRG.14876.1,blat.proc3829877.chain_3418	2	blat.proc3829877.chain_3419	1
scaffold_27	alt_acceptor	2436367	2436368	+	asmbl_36045	none	STRG.28696.1	1	STRG.28696.2	1
scaffold_19	starts_in_intron	10823153	10823153	-	asmbl_21562	none	blat.proc3829897.chain_3035,blat.proc3829897.chain_3037	2	STRG.22411.1,blat.proc3829897.chain_3036	2
scaffold_25	alt_donor	6026112	6026113	-	asmbl_34275	none	STRG.27470.1	1	STRG.27470.2	1
scaffold_18	alt_acceptor	13111882	13111883	+	asmbl_21012,asmbl_21013	none	STRG.21741.1,STRG.21741.2,blat.proc3829881.chain_2715,blat.proc3829881.chain_2716	4	STRG.21741.3	1
scaffold_2	starts_in_intron	15502025	15502025	+	asmbl_25084	none	blat.proc3829871.chain_2704	1	STRG.2512.1,blat.proc3829871.chain_2706	2
scaffold_26	alternate_exon	3335000	3335055	-	asmbl_34757	none	STRG.27996.2	1	STRG.27996.1,blat.proc3829901.chain_1188	2
scaffold_87	alt_acceptor	9592	9593	+	asmbl_53705	none	blat.proc3829901.chain_3215	1	STRG.30139.3,STRG.30139.5,STRG.30139.6,Trinity_GG_18556_c0_g1_i1	4
scaffold_11	spliced_intron	6254831	6255055	+	asmbl_5586	none	Trinity_GG_7547_c0_g1_i9,blat.proc3829877.chain_2183	2	STRG.13670.4,Trinity_GG_7547_c0_g1_i2,Trinity_GG_7547_c0_g1_i6,blat.proc3829877.chain_2178,blat.proc3829877.chain_2179	5
scaffold_24	spliced_intron	8747124	8747465	+	asmbl_32449	none	STRG.26872.3	1	STRG.26872.2,Trinity_GG_14810_c1_g1_i1,blat.proc3829883.chain_3683	3
scaffold_19	alternate_exon	13141026	13141055	+	asmbl_22662	none	STRG.22620.3	1	STRG.22620.2,blat.proc3829881.chain_3586	2
scaffold_17	alt_donor	14633346	14633347	+	asmbl_18535	none	STRG.20934.3	1	STRG.20934.1,blat.proc3829881.chain_1774	2
scaffold_2	alt_donor	14194633	14194634	-	asmbl_23583,asmbl_23585	none	blat.proc3829887.chain_2208,blat.proc3829887.chain_2210	2	STRG.2417.2,blat.proc3829887.chain_2207,blat.proc3829887.chain_2209,blat.proc3829887.chain_2212	4
scaffold_21	retained_exon	693823	693966	+	asmbl_28306	none	STRG.23742.1	1	STRG.23742.2	1
scaffold_11	alternate_exon	6763287	6763405	-	asmbl_6720	none	STRG.13704.2,blat.proc3829893.chain_2155	2	STRG.13704.1,blat.proc3829893.chain_2154	2
scaffold_2	starts_in_intron	14276464	14276464	+	asmbl_24935	none	blat.proc3829871.chain_2545	1	STRG.2425.1,STRG.2425.2,STRG.2425.3,blat.proc3829871.chain_2541,blat.proc3829871.chain_2542,blat.proc3829871.chain_2543,blat.proc3829871.chain_2544,blat.proc3829871.chain_2547	8
scaffold_16	spliced_intron	10447527	10448352	+	asmbl_17340	none	STRG.19602.2	1	STRG.19602.1,STRG.19602.3,Trinity_GG_10708_c1_g1_i1,blat.proc3829881.chain_427	4
scaffold_13	starts_in_intron	8721134	8721134	+	asmbl_11130	none	STRG.16128.2,Trinity_GG_8837_c0_g2_i1,blat.proc3829879.chain_806	3	STRG.16128.1,Trinity_GG_8837_c0_g1_i1,blat.proc3829879.chain_805	3
scaffold_4	spliced_intron	14648132	14648297	-	asmbl_41808,asmbl_41809,asmbl_41814,asmbl_41815	none	STRG.5094.1,STRG.5094.2,blat.proc3829889.chain_1117,blat.proc3829889.chain_1121,blat.proc3829889.chain_1122,blat.proc3829889.chain_1123	6	STRG.5094.3,blat.proc3829889.chain_1118,blat.proc3829889.chain_1119	3
scaffold_20	retained_intron	11591608	11592897	-	asmbl_27087	none	Trinity_GG_30197_c0_g1_i16,Trinity_GG_30197_c0_g2_i1,blat.proc3829899.chain_700,blat.proc3829899.chain_705	4	STRG.23657.1,STRG.23657.2,STRG.23657.3	3
scaffold_15	starts_in_intron	9574201	9574201	-	asmbl_15405	none	STRG.18466.2,blat.proc3829895.chain_3215	2	STRG.18466.1,blat.proc3829895.chain_3216	2
scaffold_17	retained_exon	7849410	7849473	+	asmbl_18052,asmbl_18054	none	STRG.20399.1,blat.proc3829881.chain_1175	2	STRG.20399.2	1
scaffold_4	alternate_exon	16718281	16718348	-	asmbl_41959	none	STRG.5251.1,blat.proc3829889.chain_1313	2	STRG.5251.2,blat.proc3829889.chain_1314	2
scaffold_9	retained_exon	361629	362292	+	asmbl_53738	none	STRG.10769.1,blat.proc3829875.chain_3272	2	STRG.10769.2,blat.proc3829875.chain_3273	2
scaffold_20	retained_exon	6716651	6716790	+	asmbl_25823	none	blat.proc3829883.chain_275	1	STRG.23234.2	1
scaffold_18	alt_acceptor	13656390	13656391	-	asmbl_20211	none	STRG.21789.1	1	STRG.21789.2,STRG.21789.3	2
scaffold_11	retained_intron	1605150	1605247	-	asmbl_6419	none	STRG.13326.2	1	STRG.13326.1	1
scaffold_24	alt_donor	2466479	2466480	-	asmbl_32778,asmbl_32779	none	STRG.26455.1,STRG.26455.2,blat.proc3829899.chain_3524	3	STRG.26455.3,blat.proc3829899.chain_3525	2
scaffold_2	alt_acceptor	686442	686443	+	asmbl_24112	none	STRG.1552.1,blat.proc3829871.chain_1606	2	STRG.1552.2	1
scaffold_14	starts_in_intron	341012	341012	+	asmbl_11718	none	blat.proc3829879.chain_1433	1	STRG.16712.1,blat.proc3829879.chain_1434	2
scaffold_7	spliced_intron	1386162	1387009	-	asmbl_49531,asmbl_49536,asmbl_49537,asmbl_49538	none	STRG.8638.1,STRG.8638.2,blat.proc3829891.chain_923,blat.proc3829891.chain_924,blat.proc3829891.chain_927	5	blat.proc3829891.chain_921,blat.proc3829891.chain_926	2
scaffold_24	retained_intron	9117195	9117393	+	asmbl_32514,asmbl_32515	none	blat.proc3829885.chain_101,blat.proc3829885.chain_98	2	STRG.26927.1,blat.proc3829885.chain_102,blat.proc3829885.chain_104,blat.proc3829885.chain_97	4
scaffold_14	retained_intron	148849	149079	-	asmbl_12757,asmbl_12759,asmbl_12761	none	STRG.16700.1,STRG.16700.2,Trinity_GG_26353_c0_g1_i3,blat.proc3829895.chain_1382,blat.proc3829895.chain_1383,blat.proc3829895.chain_1384	6	blat.proc3829895.chain_1385	1
scaffold_1	alt_donor	20135245	20135246	-	asmbl_1173	none	STRG.1381.4	1	STRG.1381.1,STRG.1381.2,STRG.1381.3	3
scaffold_2	alt_acceptor	15333694	15333695	+	asmbl_25054,asmbl_25055	none	STRG.2483.2,STRG.2483.3,Trinity_GG_1406_c0_g1_i1,Trinity_GG_1406_c0_g1_i2,Trinity_GG_1406_c0_g1_i6	5	STRG.2483.1,Trinity_GG_1406_c0_g1_i3	2
scaffold_14	alt_acceptor	15116257	15116258	+	asmbl_12549	none	Trinity_GG_9754_c0_g1_i8,blat.proc3829879.chain_2407	2	blat.proc3829879.chain_2411	1
scaffold_15	alt_donor	8040075	8040076	-	asmbl_15348	none	STRG.18369.4,Trinity_GG_27305_c0_g1_i2,blat.proc3829895.chain_3069	3	STRG.18369.1,STRG.18369.3,Trinity_GG_27305_c0_g1_i3,blat.proc3829895.chain_3067,blat.proc3829895.chain_3070	5
scaffold_27	alt_acceptor	6782129	6782130	-	asmbl_37038	none	STRG.29027.1,blat.proc3829901.chain_2191	2	STRG.29027.2,STRG.29027.3,blat.proc3829901.chain_2190,blat.proc3829901.chain_2193	4
scaffold_11	retained_intron	14532250	14532588	+	asmbl_6072	none	blat.proc3829877.chain_2748	1	STRG.14239.4,blat.proc3829877.chain_2743	2
scaffold_17	alt_acceptor	1510349	1510350	+	asmbl_17738,asmbl_17739	none	STRG.19975.1,Trinity_GG_10949_c0_g1_i1,Trinity_GG_10949_c0_g1_i2,blat.proc3829881.chain_815,blat.proc3829881.chain_816	5	STRG.19975.2	1
scaffold_26	ends_in_intron	9314398	9314398	+	asmbl_35744	none	Trinity_GG_15765_c0_g2_i1,blat.proc3829885.chain_1521	2	STRG.28479.3,blat.proc3829885.chain_1519	2
scaffold_4	alt_acceptor	8770992	8770993	+	asmbl_42914,asmbl_42916	none	STRG.4690.2,STRG.4690.4	2	STRG.4690.1,STRG.4690.3,STRG.4690.5,Trinity_GG_2586_c0_g1_i2,blat.proc3829873.chain_1026,blat.proc3829873.chain_1027	6
scaffold_7	alternate_exon	18768050	18772230	-	asmbl_50320,asmbl_50322	none	blat.proc3829891.chain_1876,blat.proc3829891.chain_1879	2	STRG.9684.4,blat.proc3829891.chain_1880	2
scaffold_1	skipped_exon	7291709	7292433	-	asmbl_437	none	STRG.527.2	1	STRG.527.1,blat.proc3829887.chain_421	2
scaffold_510	spliced_intron	3172	3441	-	asmbl_46465	none	STRG.30341.1	1	blat.proc3829901.chain_3390,blat.proc3829901.chain_3391	2
scaffold_17	retained_intron	9868140	9868228	-	asmbl_19260,asmbl_19263	none	STRG.20591.2,blat.proc3829897.chain_1549	2	STRG.20591.1,STRG.20591.3,blat.proc3829897.chain_1550	3
scaffold_19	spliced_intron	12822372	12822631	-	asmbl_21765	none	blat.proc3829897.chain_3280	1	blat.proc3829897.chain_3277	1
scaffold_8	alt_acceptor	17815249	17815250	+	asmbl_52503,asmbl_52506	none	STRG.10687.4,blat.proc3829875.chain_3125	2	STRG.10687.1,STRG.10687.2,Trinity_GG_5905_c0_g1_i4,Trinity_GG_5905_c0_g1_i7,blat.proc3829875.chain_3120,blat.proc3829875.chain_3121,blat.proc3829875.chain_3123	7
scaffold_13	alt_donor	9952984	9952985	+	asmbl_11201	none	STRG.16222.1,blat.proc3829879.chain_916	2	STRG.16222.2	1
scaffold_4	spliced_intron	19274897	19275126	-	asmbl_42172	none	STRG.5507.1	1	blat.proc3829889.chain_1528,blat.proc3829889.chain_1529	2
scaffold_15	alt_donor	6120517	6120518	-	asmbl_15261	none	STRG.18268.2,blat.proc3829895.chain_3040	2	STRG.18268.1	1
scaffold_1	starts_in_intron	11177387	11177387	+	asmbl_2071	none	blat.proc3829871.chain_817	1	STRG.743.1,STRG.743.2,STRG.743.3,STRG.743.4,STRG.743.5,blat.proc3829871.chain_815,blat.proc3829871.chain_819,blat.proc3829871.chain_820,blat.proc3829871.chain_821,blat.proc3829871.chain_822,blat.proc3829871.chain_824,blat.proc3829871.chain_825	12
scaffold_18	starts_in_intron	10296391	10296391	-	asmbl_20136	none	STRG.21618.3	1	STRG.21618.2	1
scaffold_14	alt_acceptor	5958794	5958795	-	asmbl_13089	none	STRG.17045.2	1	STRG.17045.1,blat.proc3829895.chain_1724	2
scaffold_22	retained_exon	484219	485088	+	asmbl_29149	none	STRG.24679.1,blat.proc3829883.chain_1725	2	STRG.24679.2	1
scaffold_14	alt_acceptor	1375462	1375463	-	asmbl_12857	none	blat.proc3829895.chain_1490	1	STRG.16775.1,STRG.16775.2,STRG.16775.3,blat.proc3829895.chain_1487,blat.proc3829895.chain_1488,blat.proc3829895.chain_1489	6
scaffold_12	starts_in_intron	14962548	14962548	-	asmbl_8151	none	blat.proc3829893.chain_3721	1	STRG.15272.1,STRG.15272.2,blat.proc3829893.chain_3719,blat.proc3829893.chain_3720	4
scaffold_20	starts_in_intron	9108304	9108304	+	asmbl_25988	none	Trinity_GG_12953_c0_g1_i7	1	STRG.23442.1,Trinity_GG_12953_c0_g1_i1,Trinity_GG_12953_c0_g1_i2,Trinity_GG_12953_c0_g1_i3,blat.proc3829883.chain_540,blat.proc3829883.chain_542,blat.proc3829883.chain_543	7
scaffold_24	retained_intron	7864239	7864324	-	asmbl_33062	none	STRG.26822.1,blat.proc3829901.chain_131	2	blat.proc3829901.chain_130	1
scaffold_14	alt_donor	1377476	1377477	-	asmbl_12859	none	STRG.16775.3	1	STRG.16775.1,STRG.16775.2,blat.proc3829895.chain_1487,blat.proc3829895.chain_1488,blat.proc3829895.chain_1489	5
scaffold_20	retained_intron	10384363	10384458	+	asmbl_26112	none	blat.proc3829883.chain_590	1	STRG.23569.3,STRG.23569.5	2
scaffold_2	spliced_intron	14360465	14360586	+	asmbl_24949,asmbl_24950	none	STRG.2435.1,STRG.2435.2,blat.proc3829871.chain_2604,blat.proc3829871.chain_2606	4	blat.proc3829871.chain_2605	1
scaffold_9	retained_intron	6717195	6717297	-	asmbl_55030	none	STRG.11175.2	1	STRG.11175.1	1
scaffold_8	retained_exon	5762373	5762414	+	asmbl_51894	none	STRG.9986.1	1	Trinity_GG_5561_c0_g1_i1,blat.proc3829875.chain_2489	2
scaffold_5	alternate_exon	18500445	18506119	-	asmbl_46216	none	STRG.6973.1,STRG.6973.2,Trinity_GG_20880_c1_g1_i2,blat.proc3829889.chain_2936,blat.proc3829889.chain_2938	5	STRG.6973.3,blat.proc3829889.chain_2937	2
scaffold_2	alt_donor	17717931	17717932	-	asmbl_23755,asmbl_23757	none	STRG.2670.1,STRG.2670.4,blat.proc3829887.chain_2449,blat.proc3829887.chain_2450	4	STRG.2670.2,blat.proc3829887.chain_2448,blat.proc3829887.chain_2451	3
scaffold_6	alternate_exon	12495507	12503307	+	asmbl_47346,asmbl_47350	none	STRG.8005.1,blat.proc3829875.chain_345,blat.proc3829875.chain_346	3	STRG.8005.3,blat.proc3829875.chain_349	2
scaffold_4	spliced_intron	5651747	5651850	-	asmbl_41352,asmbl_41354,asmbl_41355,asmbl_41357,asmbl_41359,asmbl_41360,asmbl_41361,asmbl_41362,asmbl_41363,asmbl_41364,asmbl_41365,asmbl_41366,asmbl_41368,asmbl_41369	none	STRG.4469.1,STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_605,blat.proc3829889.chain_606,blat.proc3829889.chain_607,blat.proc3829889.chain_608,blat.proc3829889.chain_609,blat.proc3829889.chain_610,blat.proc3829889.chain_611,blat.proc3829889.chain_612,blat.proc3829889.chain_613	14	Trinity_GG_19533_c0_g1_i2,blat.proc3829889.chain_602	2
scaffold_8	ends_in_intron	3327181	3327181	+	asmbl_51744	none	Trinity_GG_5458_c0_g1_i1,blat.proc3829875.chain_2298	2	STRG.9826.1,blat.proc3829875.chain_2299	2
scaffold_7	alternate_exon	5232936	5234495	+	asmbl_50684	none	blat.proc3829875.chain_1294	1	blat.proc3829875.chain_1292	1
scaffold_23	alt_acceptor	7907780	7907781	+	asmbl_31035	none	STRG.26075.2,blat.proc3829883.chain_2971	2	STRG.26075.1,blat.proc3829883.chain_2972,blat.proc3829883.chain_2973	3
scaffold_10	retained_intron	1424584	1425202	+	asmbl_4217,asmbl_4218,asmbl_4219,asmbl_4220,asmbl_4221,asmbl_4222	none	STRG.12005.1,STRG.12005.2,STRG.12005.3,STRG.12005.5,Trinity_GG_6688_c0_g1_i8,blat.proc3829877.chain_727,blat.proc3829877.chain_731,blat.proc3829877.chain_732,blat.proc3829877.chain_733	9	STRG.12005.4,Trinity_GG_6688_c0_g1_i3,Trinity_GG_6688_c0_g1_i4,Trinity_GG_6688_c0_g1_i6,blat.proc3829877.chain_728,blat.proc3829877.chain_729,blat.proc3829877.chain_730	7
scaffold_11	spliced_intron	1981821	1981961	-	asmbl_6435,asmbl_6437	none	STRG.13348.2,STRG.13348.3,blat.proc3829893.chain_1789	3	STRG.13348.1,blat.proc3829893.chain_1790	2
scaffold_15	retained_intron	15908373	15908721	-	asmbl_15824	none	Trinity_GG_27666_c0_g1_i3,blat.proc3829895.chain_3733	2	STRG.18963.1,Trinity_GG_27666_c0_g1_i1,Trinity_GG_27666_c0_g1_i4,Trinity_GG_27666_c0_g1_i5,Trinity_GG_27666_c0_g1_i8,Trinity_GG_27666_c0_g1_i9,blat.proc3829895.chain_3732,blat.proc3829895.chain_3734,blat.proc3829895.chain_3735,blat.proc3829895.chain_3736,blat.proc3829895.chain_3737	11
scaffold_6	alt_acceptor	14087947	14087948	+	asmbl_47510	none	STRG.8167.2	1	STRG.8167.1,blat.proc3829875.chain_585,blat.proc3829875.chain_586	3
scaffold_14	alt_donor	9654653	9654654	-	asmbl_13369	none	STRG.17338.1,blat.proc3829895.chain_2027	2	blat.proc3829895.chain_2025	1
scaffold_25	spliced_intron	101644	101716	+	asmbl_33309	none	STRG.27024.1,Trinity_GG_14936_c0_g1_i1,blat.proc3829885.chain_152	3	blat.proc3829885.chain_153	1
scaffold_6	retained_intron	14179224	14179390	-	asmbl_48927	none	blat.proc3829891.chain_510	1	STRG.8173.1,STRG.8173.2,blat.proc3829891.chain_508,blat.proc3829891.chain_509	4
scaffold_15	alternate_exon	11165708	11166045	+	asmbl_14429	none	STRG.18583.2	1	STRG.18583.1	1
scaffold_18	starts_in_intron	10296395	10296395	-	asmbl_20134	none	blat.proc3829897.chain_2457	1	STRG.21618.2	1
scaffold_25	alt_acceptor	7735160	7735161	+	asmbl_33671	none	STRG.27579.1,blat.proc3829885.chain_552	2	STRG.27579.2	1
scaffold_6	spliced_intron	13005188	13005430	-	asmbl_48808	none	STRG.8061.9,blat.proc3829891.chain_276	2	STRG.8061.10,Trinity_GG_21547_c0_g1_i12,blat.proc3829891.chain_261	3
scaffold_8	retained_intron	2655012	2655188	-	asmbl_52705	none	STRG.9791.4,blat.proc3829891.chain_1935	2	STRG.9791.3,blat.proc3829891.chain_1936	2
scaffold_17	alt_acceptor	13887048	13887049	-	asmbl_19432	none	STRG.20857.1	1	STRG.20857.2	1
scaffold_11	retained_intron	8099585	8099683	+	asmbl_5691	none	Trinity_GG_7614_c0_g1_i5,blat.proc3829877.chain_2297	2	STRG.13810.1,STRG.13810.2,STRG.13810.3,STRG.13810.4,Trinity_GG_7614_c0_g1_i1,Trinity_GG_7614_c0_g1_i2,Trinity_GG_7614_c0_g1_i3,Trinity_GG_7614_c0_g1_i4,Trinity_GG_7614_c0_g1_i6,blat.proc3829877.chain_2292,blat.proc3829877.chain_2293,blat.proc3829877.chain_2294,blat.proc3829877.chain_2295,blat.proc3829877.chain_2296	14
scaffold_27	alt_acceptor	6198319	6198320	+	asmbl_36336	none	STRG.28993.4	1	STRG.28993.1,STRG.28993.3,STRG.28993.5	3
scaffold_8	starts_in_intron	4895611	4895611	+	asmbl_51866	none	blat.proc3829875.chain_2365	1	STRG.9952.1,STRG.9952.2,blat.proc3829875.chain_2363,blat.proc3829875.chain_2364,blat.proc3829875.chain_2366	5
scaffold_14	spliced_intron	11388081	11388304	-	asmbl_13460,asmbl_13461,asmbl_13462	none	STRG.17457.1,STRG.17457.2,STRG.17457.3,blat.proc3829895.chain_2095,blat.proc3829895.chain_2096	5	STRG.17457.4,blat.proc3829895.chain_2098	2
scaffold_11	alt_donor	848237	848238	+	asmbl_5261	none	STRG.13269.2	1	STRG.13269.1,blat.proc3829877.chain_1787	2
scaffold_4	alt_acceptor	4928320	4928321	+	asmbl_42649	none	STRG.4392.1,blat.proc3829873.chain_707	2	STRG.4392.2,STRG.4392.3,blat.proc3829873.chain_706	3
scaffold_21	alt_donor	8137223	8137224	-	asmbl_27912	none	blat.proc3829899.chain_1383	1	blat.proc3829899.chain_1382,blat.proc3829899.chain_1387	2
scaffold_3	alt_donor	6189861	6189862	-	asmbl_38865	none	blat.proc3829887.chain_3012	1	STRG.3262.1,STRG.3262.3,blat.proc3829887.chain_3014,blat.proc3829887.chain_3015	4
scaffold_1	retained_intron	12683677	12684002	+	asmbl_2230,asmbl_2232	none	blat.proc3829871.chain_955,blat.proc3829871.chain_956,blat.proc3829871.chain_958	3	STRG.890.1,STRG.890.2,blat.proc3829871.chain_957	3
scaffold_16	spliced_intron	702407	702563	+	asmbl_16828	none	STRG.19036.1,blat.proc3829879.chain_3595	2	Trinity_GG_10405_c0_g1_i1,blat.proc3829879.chain_3594	2
scaffold_13	starts_in_intron	11721780	11721780	+	asmbl_11286	none	Trinity_GG_8963_c0_g1_i2,blat.proc3829879.chain_1054	2	STRG.16301.1,blat.proc3829879.chain_1055	2
scaffold_13	ends_in_intron	11853346	11853346	+	asmbl_11294	none	Trinity_GG_8973_c1_g1_i1,blat.proc3829879.chain_1076	2	STRG.16308.1,blat.proc3829879.chain_1075	2
scaffold_14	starts_in_intron	10683925	10683925	-	asmbl_13418,asmbl_13419	none	blat.proc3829895.chain_2121	1	STRG.17409.1,blat.proc3829895.chain_2119	2
scaffold_1	skipped_exon	12448352	12449057	+	asmbl_2202	none	STRG.856.2,Trinity_GG_494_c0_g1_i5,blat.proc3829871.chain_883	3	STRG.856.1,STRG.856.3,STRG.856.4,STRG.856.5,Trinity_GG_494_c0_g1_i3,Trinity_GG_494_c0_g1_i6,Trinity_GG_494_c0_g1_i8,blat.proc3829871.chain_882,blat.proc3829871.chain_887,blat.proc3829871.chain_888	10
scaffold_13	starts_in_intron	5544061	5544061	+	asmbl_10849	none	blat.proc3829879.chain_538,blat.proc3829879.chain_540	2	STRG.15838.1,blat.proc3829879.chain_539	2
scaffold_11	alternate_exon	6255056	6255655	+	asmbl_5586	none	Trinity_GG_7547_c0_g1_i9,blat.proc3829877.chain_2183	2	STRG.13670.1,STRG.13670.2,blat.proc3829877.chain_2180,blat.proc3829877.chain_2181	4
scaffold_17	starts_in_intron	6181644	6181644	-	asmbl_19009	none	STRG.20283.3	1	STRG.20283.1,STRG.20283.2	2
scaffold_7	retained_intron	15270861	15271287	+	asmbl_51311,asmbl_51313,asmbl_51317	none	STRG.9532.3,blat.proc3829875.chain_1981,blat.proc3829875.chain_1986	3	STRG.9532.2,STRG.9532.4,blat.proc3829875.chain_1984,blat.proc3829875.chain_1985,blat.proc3829875.chain_1987	5
scaffold_26	alt_acceptor	9090113	9090114	-	asmbl_35039,asmbl_35040	none	STRG.28455.1,blat.proc3829901.chain_1604,blat.proc3829901.chain_1605	3	STRG.28455.2	1
scaffold_1	alt_acceptor	12450568	12450569	+	asmbl_2204,asmbl_2208	none	STRG.856.5,Trinity_GG_494_c0_g1_i3,blat.proc3829871.chain_887	3	STRG.856.1,STRG.856.2,STRG.856.3,STRG.856.4,Trinity_GG_494_c0_g1_i1,Trinity_GG_494_c0_g1_i6,blat.proc3829871.chain_881,blat.proc3829871.chain_882,blat.proc3829871.chain_884	9
scaffold_6	retained_intron	2909054	2909178	+	asmbl_46732	none	Trinity_GG_3977_c0_g1_i5,blat.proc3829873.chain_3368	2	STRG.7289.2,blat.proc3829873.chain_3369,blat.proc3829873.chain_3373	3
scaffold_15	alt_acceptor	9287349	9287350	+	asmbl_14327,asmbl_14330	none	blat.proc3829879.chain_3090,blat.proc3829879.chain_3091	2	STRG.18450.1,STRG.18450.2	2
scaffold_17	retained_intron	13072493	13072772	-	asmbl_19393	none	STRG.20791.1,blat.proc3829897.chain_1717	2	STRG.20791.3	1
scaffold_16	starts_in_intron	2170839	2170839	+	asmbl_16903	none	Trinity_GG_10487_c0_g1_i8,blat.proc3829879.chain_3735	2	STRG.19105.1,STRG.19105.2,blat.proc3829879.chain_3733,blat.proc3829879.chain_3736,blat.proc3829879.chain_3737,blat.proc3829879.chain_3738,blat.proc3829879.chain_3739	7
scaffold_3	alt_donor	3322736	3322737	-	asmbl_38728	none	STRG.3076.2,blat.proc3829887.chain_2790	2	STRG.3076.1,blat.proc3829887.chain_2788,blat.proc3829887.chain_2789	3
scaffold_10	alt_donor	549435	549436	-	asmbl_2881	none	STRG.11927.3,Trinity_GG_23639_c0_g1_i3,blat.proc3829893.chain_353	3	STRG.11927.1,STRG.11927.2,Trinity_GG_23639_c0_g1_i5,blat.proc3829893.chain_354,blat.proc3829893.chain_355	5
scaffold_39	alt_donor	34255	34256	-	asmbl_41020,asmbl_41023	none	STRG.30019.1,STRG.30019.4,blat.proc3829901.chain_3117	3	STRG.30019.2,STRG.30019.3	2
scaffold_22	spliced_intron	506433	506518	-	asmbl_29851,asmbl_29852,asmbl_29853,asmbl_29854,asmbl_29860,asmbl_29861,asmbl_29863,asmbl_29865,asmbl_29868	none	STRG.24685.2,STRG.24685.3,STRG.24685.4,STRG.24685.5,Trinity_GG_30818_c0_g1_i15,Trinity_GG_30818_c0_g1_i17,Trinity_GG_30818_c0_g1_i19,Trinity_GG_30818_c0_g1_i7,Trinity_GG_30818_c0_g1_i8,blat.proc3829899.chain_1823,blat.proc3829899.chain_1824,blat.proc3829899.chain_1825,blat.proc3829899.chain_1828,blat.proc3829899.chain_1830,blat.proc3829899.chain_1831,blat.proc3829899.chain_1832,blat.proc3829899.chain_1836	17	Trinity_GG_30818_c0_g1_i13,blat.proc3829899.chain_1827	2
scaffold_10	alternate_exon	1489827	1490743	-	asmbl_2976	none	STRG.12017.1,blat.proc3829893.chain_394	2	Trinity_GG_23657_c0_g1_i7,blat.proc3829893.chain_391	2
scaffold_3	alternate_exon	5927361	5927963	-	asmbl_38830	none	blat.proc3829887.chain_2994	1	blat.proc3829887.chain_2990	1
scaffold_28	starts_in_intron	9578455	9578455	-	asmbl_37852	none	STRG.29960.1,blat.proc3829901.chain_3076	2	STRG.29960.2,blat.proc3829901.chain_3075	2
scaffold_15	skipped_exon	2990161	2990835	-	asmbl_15077	none	STRG.18069.1,blat.proc3829895.chain_2805	2	STRG.18069.2,blat.proc3829895.chain_2806	2
scaffold_4	retained_exon	19017988	19018019	-	asmbl_42146	none	STRG.5483.2	1	STRG.5483.3	1
scaffold_26	alternate_exon	6706964	6713093	-	asmbl_34970	none	STRG.28358.1,blat.proc3829901.chain_1524	2	STRG.28358.3,blat.proc3829901.chain_1521,blat.proc3829901.chain_1525	3
scaffold_13	alt_donor	11580783	11580784	+	asmbl_11264,asmbl_11266	none	STRG.16293.1,STRG.16293.3,blat.proc3829879.chain_1061	3	STRG.16293.2,blat.proc3829879.chain_1062,blat.proc3829879.chain_1064	3
scaffold_22	retained_intron	900648	900742	+	asmbl_29192	none	Trinity_GG_13671_c0_g1_i3,blat.proc3829883.chain_1779	2	Trinity_GG_13671_c0_g1_i2,blat.proc3829883.chain_1780	2
scaffold_4	spliced_intron	4417303	4417393	+	asmbl_42571,asmbl_42576,asmbl_42577,asmbl_42580,asmbl_42583,asmbl_42587,asmbl_42589,asmbl_42591,asmbl_42593	none	STRG.4344.1,STRG.4344.2,STRG.4344.3,STRG.4344.4,Trinity_GG_2404_c0_g1_i5,blat.proc3829873.chain_681,blat.proc3829873.chain_682,blat.proc3829873.chain_691,blat.proc3829873.chain_696,blat.proc3829873.chain_697,blat.proc3829873.chain_698	11	Trinity_GG_2404_c0_g1_i10,Trinity_GG_2404_c0_g1_i19,blat.proc3829873.chain_685,blat.proc3829873.chain_686,blat.proc3829873.chain_687,blat.proc3829873.chain_689,blat.proc3829873.chain_690	7
scaffold_13	starts_in_intron	11271339	11271339	-	asmbl_10036	none	blat.proc3829895.chain_1010	1	STRG.16275.1,STRG.16275.2,blat.proc3829895.chain_1011	3
scaffold_3	retained_exon	13833620	13833814	+	asmbl_40420	none	blat.proc3829873.chain_124	1	blat.proc3829873.chain_126	1
scaffold_11	ends_in_intron	3415286	3415286	+	asmbl_5390	none	blat.proc3829877.chain_1953	1	STRG.13465.1,blat.proc3829877.chain_1952	2
scaffold_23	skipped_exon	4226097	4226699	-	asmbl_31570	none	STRG.25818.5	1	STRG.25818.1,STRG.25818.2,STRG.25818.3,blat.proc3829899.chain_2943,blat.proc3829899.chain_2944,blat.proc3829899.chain_2945,blat.proc3829899.chain_2946,blat.proc3829899.chain_2949	8
scaffold_5	alt_acceptor	12636886	12636887	+	asmbl_44478	none	STRG.6490.1,blat.proc3829873.chain_2634	2	STRG.6490.2	1
scaffold_16	alt_acceptor	5963168	5963169	+	asmbl_17040,asmbl_17043,asmbl_17044	none	STRG.19319.1,STRG.19319.3,blat.proc3829881.chain_166	3	STRG.19319.2,blat.proc3829881.chain_165	2
scaffold_4	alt_acceptor	4498819	4498820	-	asmbl_41258	none	STRG.4352.2	1	STRG.4352.1,Trinity_GG_19457_c0_g1_i2,blat.proc3829889.chain_479	3
scaffold_1	starts_in_intron	1620479	1620479	+	asmbl_1495	none	STRG.102.5,Trinity_GG_85_c0_g1_i4,blat.proc3829871.chain_147	3	STRG.102.2,Trinity_GG_85_c0_g1_i1,Trinity_GG_85_c0_g1_i3,blat.proc3829871.chain_144,blat.proc3829871.chain_145	5
scaffold_11	spliced_intron	9829435	9829603	+	asmbl_5867,asmbl_5874	none	STRG.13996.3,blat.proc3829877.chain_2511	2	STRG.13996.1,STRG.13996.4,Trinity_GG_7729_c0_g1_i9,blat.proc3829877.chain_2506,blat.proc3829877.chain_2513,blat.proc3829877.chain_2514	6
scaffold_15	retained_exon	7183429	7183551	-	asmbl_15297	none	STRG.18300.4,blat.proc3829895.chain_2962	2	STRG.18300.3,blat.proc3829895.chain_2963	2
scaffold_4	starts_in_intron	4679945	4679945	+	asmbl_42626	none	Trinity_GG_2431_c0_g1_i1,blat.proc3829873.chain_755	2	STRG.4365.1,blat.proc3829873.chain_753	2
scaffold_3	alt_donor	17456083	17456084	+	asmbl_40645	none	STRG.3976.4	1	STRG.3976.1,STRG.3976.3,Trinity_GG_2205_c0_g1_i1,Trinity_GG_2205_c0_g1_i3,blat.proc3829873.chain_332,blat.proc3829873.chain_333	6
scaffold_12	ends_in_intron	8917571	8917571	+	asmbl_8805	none	STRG.14884.2	1	STRG.14884.1,blat.proc3829877.chain_3414	2
scaffold_8	spliced_intron	18248240	18248548	-	asmbl_53541,asmbl_53542	none	STRG.10723.1,STRG.10723.2	2	STRG.10723.4,blat.proc3829891.chain_2922,blat.proc3829891.chain_2923,blat.proc3829891.chain_2924	4
scaffold_9	starts_in_intron	15268091	15268091	-	asmbl_55478	none	blat.proc3829893.chain_70	1	STRG.11712.1	1
scaffold_27	alternate_exon	934518	934677	-	asmbl_36670	none	STRG.28569.1,blat.proc3829901.chain_1746,blat.proc3829901.chain_1748	3	STRG.28569.2,STRG.28569.3,blat.proc3829901.chain_1747	3
scaffold_14	alt_donor	866502	866503	+	asmbl_11747,asmbl_11749,asmbl_11750,asmbl_11751	none	STRG.16747.1,STRG.16747.2,STRG.16747.3,Trinity_GG_9198_c0_g1_i4,blat.proc3829879.chain_1428	5	blat.proc3829879.chain_1427	1
scaffold_20	alternate_exon	425609	428414	+	asmbl_25506	none	STRG.22729.1	1	STRG.22729.4,blat.proc3829901.chain_3120	2
scaffold_5	retained_intron	10290152	10290283	-	asmbl_45718	none	blat.proc3829889.chain_2328	1	STRG.6316.1,blat.proc3829889.chain_2329	2
scaffold_23	alt_acceptor	197909	197910	+	asmbl_30593	none	STRG.25518.2	1	STRG.25518.1	1
scaffold_13	retained_intron	3430216	3430310	+	asmbl_10674	none	Trinity_GG_8566_c0_g1_i5,blat.proc3829879.chain_288	2	STRG.15637.1,blat.proc3829879.chain_287,blat.proc3829879.chain_289	3
scaffold_2	spliced_intron	11448324	11448569	-	asmbl_23464	none	STRG.2256.1,blat.proc3829887.chain_2162	2	Trinity_GG_18286_c0_g1_i1,blat.proc3829887.chain_2161	2
scaffold_16	spliced_intron	1236351	1236851	-	asmbl_16101,asmbl_16103	none	STRG.19075.1,blat.proc3829897.chain_127,blat.proc3829897.chain_128	3	blat.proc3829897.chain_126	1
scaffold_25	alternate_exon	434521	434541	+	asmbl_33323	none	Trinity_GG_14952_c0_g1_i1,blat.proc3829885.chain_181	2	STRG.27069.1,blat.proc3829885.chain_180	2
scaffold_2	alt_donor	888423	888424	+	asmbl_24148,asmbl_24149,asmbl_24150	none	STRG.1564.2,STRG.1564.5,Trinity_GG_856_c1_g1_i1,blat.proc3829871.chain_1546,blat.proc3829871.chain_1551	5	STRG.1564.1,STRG.1564.3,blat.proc3829871.chain_1552	3
scaffold_1	alternate_exon	849973	850047	+	asmbl_1415,asmbl_1416	none	STRG.41.1,STRG.41.2,Trinity_GG_29_c0_g1_i1,Trinity_GG_29_c0_g1_i2,blat.proc3829871.chain_50,blat.proc3829871.chain_52	6	STRG.41.3,STRG.41.4	2
scaffold_2	alternate_exon	9870088	9870118	-	asmbl_23413	none	STRG.2192.2	1	STRG.2192.1	1
scaffold_13	spliced_intron	517905	518487	+	asmbl_10456,asmbl_10461	none	STRG.15434.2,blat.proc3829879.chain_115,blat.proc3829879.chain_116	3	STRG.15434.1,blat.proc3829879.chain_114	2
scaffold_5	alt_acceptor	13316688	13316689	-	asmbl_45915,asmbl_45920	none	STRG.6578.1,STRG.6578.2	2	blat.proc3829889.chain_2545,blat.proc3829889.chain_2546,blat.proc3829889.chain_2547	3
scaffold_17	retained_intron	6803623	6804157	-	asmbl_19030	none	STRG.20323.1	1	STRG.20323.2	1
scaffold_9	retained_intron	12073542	12074636	-	asmbl_55316	none	Trinity_GG_23360_c0_g1_i7,blat.proc3829891.chain_3639	2	STRG.11518.2,Trinity_GG_23360_c0_g1_i5,blat.proc3829891.chain_3634	3
scaffold_6	skipped_exon	3041154	3042596	-	asmbl_48167	none	STRG.7302.1,blat.proc3829889.chain_3319	2	STRG.7302.2,STRG.7302.3,blat.proc3829889.chain_3316,blat.proc3829889.chain_3318	4
scaffold_14	retained_intron	151364	151904	-	asmbl_12760,asmbl_12763	none	Trinity_GG_26353_c0_g1_i1,blat.proc3829895.chain_1387,blat.proc3829895.chain_1388	3	STRG.16700.2,STRG.16700.3,Trinity_GG_26353_c0_g1_i4,blat.proc3829895.chain_1384,blat.proc3829895.chain_1385,blat.proc3829895.chain_1386	6
scaffold_15	retained_intron	4117643	4117724	-	asmbl_15130,asmbl_15132	none	STRG.18141.1,STRG.18141.3,Trinity_GG_27184_c0_g1_i1,blat.proc3829895.chain_2828	4	STRG.18141.4	1
scaffold_7	alternate_exon	12451550	12457230	-	asmbl_50036,asmbl_50042,asmbl_50043	none	STRG.9342.1,STRG.9342.2,STRG.9342.4,Trinity_GG_22282_c1_g1_i7,blat.proc3829891.chain_1602,blat.proc3829891.chain_1607,blat.proc3829891.chain_1608	7	STRG.9342.3,Trinity_GG_22282_c1_g1_i12,blat.proc3829891.chain_1610	3
scaffold_1	starts_in_intron	2131461	2131461	+	asmbl_1531	none	Trinity_GG_101_c0_g1_i1,blat.proc3829871.chain_170	2	STRG.143.1,blat.proc3829871.chain_171,blat.proc3829871.chain_172	3
scaffold_21	ends_in_intron	7386535	7386535	+	asmbl_28748	none	blat.proc3829883.chain_1380	1	STRG.24246.1,STRG.24246.2,blat.proc3829883.chain_1379,blat.proc3829883.chain_1381	4
scaffold_21	retained_exon	834695	834853	+	asmbl_28331,asmbl_28334	none	STRG.23762.2,blat.proc3829883.chain_910,blat.proc3829883.chain_913	3	STRG.23762.1,blat.proc3829883.chain_911,blat.proc3829883.chain_912	3
scaffold_13	alt_acceptor	2357390	2357391	+	asmbl_10591	none	STRG.15543.9	1	STRG.15543.3,STRG.15543.6,STRG.15543.7,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161,blat.proc3829879.chain_162	11
scaffold_13	alt_acceptor	7217676	7217677	+	asmbl_11007,asmbl_11008,asmbl_11009,asmbl_11010	none	STRG.16002.1,blat.proc3829879.chain_695,blat.proc3829879.chain_696,blat.proc3829879.chain_698,blat.proc3829879.chain_701	5	blat.proc3829879.chain_699	1
scaffold_18	retained_intron	8726290	8727002	+	asmbl_20881	none	STRG.21533.6,Trinity_GG_11882_c0_g1_i2,blat.proc3829881.chain_2487	3	STRG.21533.4	1
scaffold_18	alt_acceptor	7868871	7868872	+	asmbl_20825,asmbl_20830,asmbl_20831	none	STRG.21477.6,Trinity_GG_11877_c0_g1_i6,blat.proc3829881.chain_2476,blat.proc3829881.chain_2477	4	STRG.21477.1,STRG.21477.2,STRG.21477.3,STRG.21477.4,STRG.21477.5,blat.proc3829881.chain_2467,blat.proc3829881.chain_2469,blat.proc3829881.chain_2470,blat.proc3829881.chain_2472,blat.proc3829881.chain_2473,blat.proc3829881.chain_2474	11
scaffold_15	alt_donor	15130826	15130827	-	asmbl_15775	none	Trinity_GG_27624_c0_g1_i2,blat.proc3829895.chain_3669	2	STRG.18892.1,Trinity_GG_27624_c0_g1_i1,blat.proc3829895.chain_3668	3
scaffold_4	alt_acceptor	10451857	10451858	-	asmbl_41589,asmbl_41590,asmbl_41596	none	STRG.4795.2,STRG.4795.3,blat.proc3829889.chain_838	3	STRG.4795.1,blat.proc3829889.chain_833,blat.proc3829889.chain_835,blat.proc3829889.chain_839	4
scaffold_11	skipped_exon	14532679	14533569	+	asmbl_6066	none	STRG.14239.3,Trinity_GG_7860_c0_g1_i6,blat.proc3829877.chain_2745	3	STRG.14239.1,Trinity_GG_7860_c0_g1_i2,blat.proc3829877.chain_2747	3
scaffold_7	alternate_exon	6623591	6624504	+	asmbl_50754	none	STRG.8925.4,Trinity_GG_4892_c1_g1_i1,blat.proc3829875.chain_1308	3	STRG.8925.1,STRG.8925.2,Trinity_GG_4892_c0_g1_i1,blat.proc3829875.chain_1307	4
scaffold_6	alternate_exon	9712063	9712545	-	asmbl_48567	none	STRG.7811.3,blat.proc3829889.chain_3742	2	STRG.7811.1	1
scaffold_9	alt_acceptor	9736447	9736448	+	asmbl_54229	none	STRG.11341.1,blat.proc3829877.chain_146	2	STRG.11341.3,blat.proc3829877.chain_148,blat.proc3829877.chain_150	3
scaffold_2	spliced_intron	7241982	7242169	+	asmbl_24584,asmbl_24588,asmbl_24589,asmbl_24591	none	STRG.2061.1,blat.proc3829871.chain_2168,blat.proc3829871.chain_2169,blat.proc3829871.chain_2170,blat.proc3829871.chain_2172	5	blat.proc3829871.chain_2164,blat.proc3829871.chain_2166,blat.proc3829871.chain_2171	3
scaffold_16	alt_donor	4721204	4721205	+	asmbl_16992	none	STRG.19242.2,blat.proc3829881.chain_63	2	STRG.19242.1,blat.proc3829881.chain_64	2
scaffold_3	retained_intron	11270000	11270142	+	asmbl_40289	none	Trinity_GG_2012_c0_g1_i1,blat.proc3829871.chain_3733	2	STRG.3548.1,Trinity_GG_2012_c0_g1_i2,blat.proc3829871.chain_3732	3
scaffold_4	retained_exon	14318666	14318790	-	asmbl_41789	none	STRG.5045.1,blat.proc3829889.chain_1094	2	STRG.5045.3,blat.proc3829889.chain_1095	2
scaffold_13	alt_donor	6396468	6396469	+	asmbl_10907	none	STRG.15914.2,Trinity_GG_8718_c0_g1_i4,Trinity_GG_8718_c0_g1_i6,blat.proc3829879.chain_550,blat.proc3829879.chain_553	5	STRG.15914.1,STRG.15914.5,Trinity_GG_8718_c0_g1_i1,blat.proc3829879.chain_557	4
scaffold_2	spliced_intron	10719654	10719730	+	asmbl_24761	none	STRG.2240.1,Trinity_GG_1261_c0_g1_i5,blat.proc3829871.chain_2344	3	STRG.2240.2,Trinity_GG_1261_c0_g1_i1,blat.proc3829871.chain_2345	3
scaffold_4	alt_donor	9716300	9716301	-	asmbl_41559	none	STRG.4738.2,blat.proc3829889.chain_817	2	STRG.4738.1,blat.proc3829889.chain_818	2
scaffold_8	spliced_intron	6307610	6307748	+	asmbl_51945	none	STRG.10028.1,blat.proc3829875.chain_2461	2	blat.proc3829875.chain_2462	1
scaffold_4	retained_intron	6247748	6247873	+	asmbl_42710,asmbl_42711,asmbl_42712	none	STRG.4494.1,STRG.4494.3,blat.proc3829873.chain_839,blat.proc3829873.chain_840	4	STRG.4494.2,blat.proc3829873.chain_841	2
scaffold_7	spliced_intron	817670	817822	+	asmbl_50443	none	STRG.8613.1,blat.proc3829875.chain_974	2	blat.proc3829875.chain_972	1
scaffold_2	retained_intron	7220195	7220310	+	asmbl_24570,asmbl_24571,asmbl_24575,asmbl_24582	none	STRG.2054.5,STRG.2054.6,Trinity_GG_1174_c0_g1_i12,Trinity_GG_1174_c0_g1_i13,blat.proc3829871.chain_2145,blat.proc3829871.chain_2150,blat.proc3829871.chain_2152	7	STRG.2054.1,Trinity_GG_1174_c0_g1_i2,blat.proc3829871.chain_2153	3
scaffold_1	ends_in_intron	988964	988964	+	asmbl_1445	none	Trinity_GG_4_c0_g1_i1,blat.proc3829871.chain_6	2	STRG.53.1,Trinity_GG_4_c0_g1_i2,blat.proc3829871.chain_5	3
scaffold_15	alternate_exon	12391006	12391442	-	asmbl_15587	none	STRG.18686.1,blat.proc3829895.chain_3453	2	STRG.18686.2,STRG.18686.3	2
scaffold_27	alt_acceptor	6782164	6782165	-	asmbl_37037	none	STRG.29027.2,blat.proc3829901.chain_2190	2	STRG.29027.1,STRG.29027.3,blat.proc3829901.chain_2191,blat.proc3829901.chain_2193	4
scaffold_8	starts_in_intron	6036253	6036253	+	asmbl_51919	none	blat.proc3829875.chain_2506	1	STRG.10001.1,Trinity_GG_5571_c0_g1_i1,Trinity_GG_5571_c0_g1_i3,blat.proc3829875.chain_2505,blat.proc3829875.chain_2508	5
scaffold_2	skipped_exon	923893	926762	+	asmbl_24171,asmbl_24173	none	STRG.1569.1,blat.proc3829871.chain_1534,blat.proc3829871.chain_1537	3	STRG.1569.3,STRG.1569.4,blat.proc3829871.chain_1535,blat.proc3829871.chain_1542	4
scaffold_28	ends_in_intron	2340747	2340747	-	asmbl_37368	none	Trinity_GG_33454_c0_g1_i4,blat.proc3829901.chain_2459	2	Trinity_GG_33454_c0_g1_i3,blat.proc3829901.chain_2458,blat.proc3829901.chain_2460	3
scaffold_26	spliced_intron	9840009	9840737	-	asmbl_35067,asmbl_35069	none	STRG.28525.2,Trinity_GG_32930_c0_g1_i2,blat.proc3829901.chain_1621	3	blat.proc3829901.chain_1620	1
scaffold_15	alt_acceptor	16302351	16302352	-	asmbl_15841	none	blat.proc3829895.chain_3738	1	STRG.18975.1,blat.proc3829895.chain_3739	2
scaffold_13	alt_donor	2977499	2977500	-	asmbl_9458	none	STRG.15584.2	1	STRG.15584.1,blat.proc3829895.chain_363	2
scaffold_6	alternate_exon	12554879	12554983	-	asmbl_48764	none	blat.proc3829891.chain_321	1	STRG.8010.3,blat.proc3829891.chain_322	2
scaffold_6	skipped_exon	2925434	2927522	-	asmbl_48142,asmbl_48143	none	STRG.7290.4,blat.proc3829889.chain_3237	2	STRG.7290.2,STRG.7290.3,blat.proc3829889.chain_3235,blat.proc3829889.chain_3236	4
scaffold_3	alt_donor	17364899	17364900	-	asmbl_39496,asmbl_39503	none	STRG.3972.4,blat.proc3829889.chain_24	2	STRG.3972.1,STRG.3972.3,blat.proc3829889.chain_23,blat.proc3829889.chain_25,blat.proc3829889.chain_29,blat.proc3829889.chain_30,blat.proc3829889.chain_31	7
scaffold_27	ends_in_intron	1943399	1943399	+	asmbl_36002,asmbl_36004	none	STRG.28655.2,STRG.28655.3,blat.proc3829885.chain_1686	3	STRG.28655.1,blat.proc3829885.chain_1688	2
scaffold_26	alternate_exon	6704798	6706255	-	asmbl_34974	none	STRG.28358.3	1	blat.proc3829901.chain_1523	1
scaffold_16	alternate_exon	440300	440745	-	asmbl_16042	none	blat.proc3829897.chain_32	1	STRG.19039.4	1
scaffold_12	retained_intron	12349498	12349762	+	asmbl_8961	none	Trinity_GG_8344_c0_g1_i2,blat.proc3829877.chain_3602	2	STRG.15126.1,Trinity_GG_8344_c0_g1_i1,blat.proc3829877.chain_3600,blat.proc3829877.chain_3601	4
scaffold_5	alt_acceptor	16205635	16205636	+	asmbl_44719	none	blat.proc3829873.chain_2889	1	STRG.6800.1,STRG.6800.2,blat.proc3829873.chain_2888,blat.proc3829873.chain_2890,blat.proc3829873.chain_2891	5
scaffold_5	alternate_exon	4686150	4688616	-	asmbl_45378	none	blat.proc3829889.chain_2026	1	blat.proc3829889.chain_2034	1
scaffold_12	spliced_intron	15694711	15694787	+	asmbl_9098	none	STRG.15349.1,blat.proc3829879.chain_20	2	blat.proc3829879.chain_19	1
scaffold_17	ends_in_intron	1519655	1519655	-	asmbl_18769	none	STRG.19978.2,blat.proc3829897.chain_967	2	STRG.19978.1,blat.proc3829897.chain_965	2
scaffold_21	starts_in_intron	5281658	5281658	-	asmbl_27667	none	blat.proc3829899.chain_1148	1	STRG.24056.1,STRG.24056.2,STRG.24056.3,STRG.24056.4,blat.proc3829899.chain_1144,blat.proc3829899.chain_1146	6
scaffold_10	starts_in_intron	13921694	13921694	+	asmbl_4906	none	Trinity_GG_7141_c0_g1_i1,blat.proc3829877.chain_1530	2	STRG.12966.1	1
scaffold_9	spliced_intron	7823073	7823170	-	asmbl_55077	none	STRG.11215.1,blat.proc3829891.chain_3346	2	blat.proc3829891.chain_3345	1
scaffold_13	retained_intron	16284302	16284439	+	asmbl_11545	none	STRG.16672.1,Trinity_GG_9162_c0_g1_i4,blat.proc3829879.chain_1370	3	STRG.16672.2,blat.proc3829879.chain_1373	2
scaffold_25	starts_in_intron	5158408	5158408	-	asmbl_34229	none	blat.proc3829901.chain_748	1	STRG.27422.1,blat.proc3829901.chain_746,blat.proc3829901.chain_747	3
scaffold_5	starts_in_intron	18992732	18992732	+	asmbl_44955	none	STRG.7007.2	1	STRG.7007.1,Trinity_GG_3838_c1_g1_i1,Trinity_GG_3838_c1_g1_i2,blat.proc3829873.chain_3125,blat.proc3829873.chain_3126	5
scaffold_5	alternate_exon	10890321	10892725	-	asmbl_45769	none	blat.proc3829889.chain_2356	1	blat.proc3829889.chain_2354	1
scaffold_21	alternate_exon	7915203	7915341	-	asmbl_27883	none	STRG.24311.1,blat.proc3829899.chain_1283	2	STRG.24311.3	1
scaffold_2	alt_acceptor	15453335	15453336	+	asmbl_25064,asmbl_25070	none	STRG.2500.2,blat.proc3829871.chain_2679	2	STRG.2500.1,blat.proc3829871.chain_2680,blat.proc3829871.chain_2681,blat.proc3829871.chain_2682,blat.proc3829871.chain_2684,blat.proc3829871.chain_2685	6
scaffold_16	retained_exon	8711878	8711984	-	asmbl_16434,asmbl_16435	none	STRG.19484.2,blat.proc3829897.chain_510,blat.proc3829897.chain_511	3	STRG.19484.1,STRG.19484.3,blat.proc3829897.chain_508,blat.proc3829897.chain_509	4
scaffold_8	starts_in_intron	12671654	12671654	+	asmbl_52315	none	Trinity_GG_5806_c0_g1_i1,blat.proc3829875.chain_2934	2	STRG.10430.1,Trinity_GG_5806_c0_g1_i2,blat.proc3829875.chain_2935	3
scaffold_9	alt_acceptor	11812455	11812456	-	asmbl_55275	none	STRG.11486.3,blat.proc3829891.chain_3597	2	STRG.11486.1,STRG.11486.2,blat.proc3829891.chain_3596	3
scaffold_8	ends_in_intron	12810665	12810665	-	asmbl_53240	none	blat.proc3829891.chain_2605	1	STRG.10465.1,STRG.10465.2,blat.proc3829891.chain_2603,blat.proc3829891.chain_2604	4
scaffold_3	alternate_exon	5753367	5754542	+	asmbl_40036	none	STRG.3236.1,Trinity_GG_1791_c0_g1_i1,blat.proc3829871.chain_3349	3	STRG.3236.2	1
scaffold_11	retained_intron	13462527	13462704	-	asmbl_7109	none	Trinity_GG_24953_c0_g1_i1,blat.proc3829893.chain_2634	2	STRG.14196.1,STRG.14196.2,Trinity_GG_24953_c0_g1_i2,Trinity_GG_24953_c0_g1_i4,blat.proc3829893.chain_2631,blat.proc3829893.chain_2633	6
scaffold_6	spliced_intron	14175901	14176174	-	asmbl_48925,asmbl_48927,asmbl_48928,asmbl_48929	none	STRG.8173.1,STRG.8173.2,blat.proc3829891.chain_509,blat.proc3829891.chain_510,blat.proc3829891.chain_511	5	blat.proc3829891.chain_508	1
scaffold_3	starts_in_intron	14591216	14591216	-	asmbl_39354	none	STRG.3797.1,Trinity_GG_19126_c2_g1_i1,blat.proc3829887.chain_3642	3	STRG.3797.2,blat.proc3829887.chain_3640	2
scaffold_2	spliced_intron	2995343	2995363	-	asmbl_22975	none	STRG.1746.3	1	STRG.1746.1,STRG.1746.2	2
scaffold_5	alternate_exon	5739762	5741887	+	asmbl_44025	none	STRG.5984.3,Trinity_GG_3277_c0_g1_i1,blat.proc3829873.chain_2049,blat.proc3829873.chain_2147	4	STRG.5984.1,STRG.5984.2,blat.proc3829873.chain_2047	3
scaffold_28	alt_acceptor	5851960	5851961	+	asmbl_38304	none	STRG.29697.2,Trinity_GG_16460_c0_g1_i1,blat.proc3829885.chain_2806	3	STRG.29697.1	1
scaffold_21	alt_donor	256705	256706	-	asmbl_27314,asmbl_27315,asmbl_27317,asmbl_27320,asmbl_27322,asmbl_27323	none	STRG.23718.2,STRG.23718.3,STRG.23718.4,STRG.23718.7,blat.proc3829899.chain_782,blat.proc3829899.chain_786,blat.proc3829899.chain_788,blat.proc3829899.chain_791,blat.proc3829899.chain_794	9	STRG.23718.1,STRG.23718.5,STRG.23718.6,STRG.23718.8,Trinity_GG_30232_c0_g1_i4,blat.proc3829899.chain_781,blat.proc3829899.chain_783,blat.proc3829899.chain_785,blat.proc3829899.chain_787,blat.proc3829899.chain_790	10
scaffold_3	retained_exon	6188092	6189042	-	asmbl_38866	none	STRG.3262.3,blat.proc3829887.chain_3014	2	STRG.3262.1,blat.proc3829887.chain_3015	2
scaffold_2	alt_donor	690723	690724	+	asmbl_24116	none	STRG.1553.4	1	STRG.1553.2	1
scaffold_17	retained_intron	2721370	2721870	+	asmbl_17822	none	Trinity_GG_10966_c0_g1_i1,blat.proc3829881.chain_844	2	STRG.20056.1,STRG.20056.2,Trinity_GG_10966_c0_g1_i2,blat.proc3829881.chain_843	4
scaffold_4	spliced_intron	4121063	4121376	-	asmbl_41237	none	STRG.4323.1,blat.proc3829889.chain_476	2	STRG.4323.2,STRG.4323.3,Trinity_GG_19456_c0_g1_i2,Trinity_GG_19456_c0_g1_i5,blat.proc3829889.chain_474,blat.proc3829889.chain_475,blat.proc3829889.chain_477	7
scaffold_3	spliced_intron	3258676	3259114	+	asmbl_39905,asmbl_39906	none	blat.proc3829871.chain_3306,blat.proc3829871.chain_3309	2	blat.proc3829871.chain_3297	1
scaffold_8	skipped_exon	9696519	9698018	+	asmbl_52083	none	STRG.10208.1,blat.proc3829875.chain_2707	2	STRG.10208.2,STRG.10208.3,blat.proc3829875.chain_2708	3
scaffold_17	spliced_intron	8210415	8210546	-	asmbl_19124	none	STRG.20431.1,blat.proc3829897.chain_1411	2	blat.proc3829897.chain_1410	1
scaffold_5	retained_intron	15766542	15766727	+	asmbl_44679,asmbl_44681	none	Trinity_GG_3692_c0_g1_i6,blat.proc3829873.chain_2875,blat.proc3829873.chain_2879	3	STRG.6763.1,blat.proc3829873.chain_2874,blat.proc3829873.chain_2876,blat.proc3829873.chain_2877,blat.proc3829873.chain_2880,blat.proc3829873.chain_2882	6
scaffold_11	skipped_exon	8896554	8898836	-	asmbl_6866	none	STRG.13898.1	1	STRG.13898.2	1
scaffold_22	retained_intron	323190	323437	+	asmbl_29134	none	STRG.24670.2	1	STRG.24670.3,blat.proc3829883.chain_1729	2
scaffold_14	starts_in_intron	10778801	10778801	+	asmbl_12329	none	blat.proc3829879.chain_2134	1	STRG.17414.1,blat.proc3829879.chain_2132	2
scaffold_4	skipped_exon	16370271	16372613	-	asmbl_41912	none	STRG.5207.2	1	STRG.5207.1,blat.proc3829889.chain_1247	2
scaffold_13	retained_intron	2507878	2508092	+	asmbl_10604,asmbl_10605	none	Trinity_GG_8559_c0_g1_i4,Trinity_GG_8559_c0_g1_i5,blat.proc3829879.chain_268,blat.proc3829879.chain_270	4	STRG.15546.1,STRG.15546.2,STRG.15546.3,Trinity_GG_8559_c0_g1_i1,Trinity_GG_8559_c0_g1_i3,blat.proc3829879.chain_269,blat.proc3829879.chain_271	7
scaffold_18	spliced_intron	8372775	8373987	-	asmbl_20036,asmbl_20037	none	STRG.21500.2,STRG.21500.3	2	STRG.21500.1,blat.proc3829897.chain_2273	2
scaffold_22	alt_donor	4411964	4411965	-	asmbl_30025	none	STRG.24848.2	1	STRG.24848.1,STRG.24848.3	2
scaffold_10	alternate_exon	12799156	12799216	-	asmbl_3730	none	STRG.12855.2,blat.proc3829893.chain_1360	2	STRG.12855.3	1
scaffold_20	alt_donor	10520898	10520899	-	asmbl_27032	none	STRG.23576.1,blat.proc3829899.chain_522	2	STRG.23576.2,blat.proc3829899.chain_520	2
scaffold_7	alt_acceptor	4933376	4933377	+	asmbl_50650	none	blat.proc3829875.chain_1280	1	STRG.8834.1,STRG.8834.2,blat.proc3829875.chain_1275,blat.proc3829875.chain_1276,blat.proc3829875.chain_1278,blat.proc3829875.chain_1279,blat.proc3829875.chain_1281,blat.proc3829875.chain_1282,blat.proc3829875.chain_1283	9
scaffold_17	starts_in_intron	993049	993049	-	asmbl_18704	none	Trinity_GG_28159_c0_g1_i2	1	STRG.19926.1,Trinity_GG_28159_c0_g1_i1,blat.proc3829897.chain_818	3
scaffold_25	starts_in_intron	8484437	8484437	-	asmbl_34418	none	blat.proc3829901.chain_916	1	STRG.27663.1,STRG.27663.2,blat.proc3829901.chain_915	3
scaffold_25	retained_exon	4117978	4118122	+	asmbl_33471,asmbl_33473	none	STRG.27327.1,STRG.27327.2,blat.proc3829885.chain_277	3	blat.proc3829885.chain_276	1
scaffold_5	alt_acceptor	17297936	17297937	+	asmbl_44819	none	STRG.6893.1,blat.proc3829873.chain_3049	2	STRG.6893.2,STRG.6893.3,blat.proc3829873.chain_3048	3
scaffold_12	alt_donor	4951705	4951706	-	asmbl_7598,asmbl_7600	none	STRG.14653.1,blat.proc3829893.chain_3045,blat.proc3829893.chain_3046	3	STRG.14653.2,blat.proc3829893.chain_3044	2
scaffold_4	starts_in_intron	4097515	4097515	+	asmbl_42549	none	Trinity_GG_2386_c0_g1_i3,blat.proc3829873.chain_637	2	STRG.4313.1,STRG.4313.2,STRG.4313.3,STRG.4313.4,blat.proc3829873.chain_632,blat.proc3829873.chain_639,blat.proc3829873.chain_641	7
scaffold_13	alt_donor	16138073	16138074	+	asmbl_11531	none	STRG.16640.1,Trinity_GG_9180_c0_g1_i1	2	STRG.16640.2	1
scaffold_5	retained_exon	16519193	16519220	-	asmbl_46128	none	STRG.6833.2,blat.proc3829889.chain_2876	2	STRG.6833.1,blat.proc3829889.chain_2877	2
scaffold_25	retained_intron	8705312	8706427	+	asmbl_33752,asmbl_33753	none	Trinity_GG_15273_c0_g1_i8,blat.proc3829885.chain_691,blat.proc3829885.chain_697,blat.proc3829885.chain_702	4	STRG.27679.2,blat.proc3829885.chain_694	2
scaffold_5	retained_intron	15513154	15513296	-	asmbl_46069	none	blat.proc3829889.chain_2758	1	STRG.6739.1,STRG.6739.2,blat.proc3829889.chain_2757,blat.proc3829889.chain_2759	4
scaffold_27	alt_donor	382926	382927	-	asmbl_36636,asmbl_36637	none	STRG.28547.4,STRG.28547.5,blat.proc3829901.chain_1684,blat.proc3829901.chain_1685	4	STRG.28547.1,Trinity_GG_32953_c1_g1_i2,blat.proc3829901.chain_1683,blat.proc3829901.chain_1687	4
scaffold_17	retained_intron	9029724	9030391	-	asmbl_19187	none	Trinity_GG_28534_c0_g1_i3,blat.proc3829897.chain_1456	2	STRG.20520.1,STRG.20520.2,STRG.20520.5,STRG.20520.6,blat.proc3829897.chain_1455	5
scaffold_19	retained_exon	11483437	11483478	-	asmbl_21623,asmbl_21624	none	blat.proc3829897.chain_3187,blat.proc3829897.chain_3192	2	STRG.22477.3,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184	3
scaffold_3	spliced_intron	6658616	6658787	+	asmbl_40063,asmbl_40066,asmbl_40067,asmbl_40068	none	STRG.3290.2,STRG.3290.5,blat.proc3829871.chain_3468,blat.proc3829871.chain_3469	4	STRG.3290.1,STRG.3290.3,STRG.3290.4,blat.proc3829871.chain_3459,blat.proc3829871.chain_3460,blat.proc3829871.chain_3461,blat.proc3829871.chain_3464	7
scaffold_8	retained_intron	9468446	9468514	-	asmbl_53035	none	blat.proc3829891.chain_2407	1	STRG.10197.1,blat.proc3829891.chain_2400,blat.proc3829891.chain_2402,blat.proc3829891.chain_2405,blat.proc3829891.chain_2406,blat.proc3829891.chain_2408	6
scaffold_24	alt_donor	3655919	3655920	+	asmbl_32166,asmbl_32167	none	STRG.26528.2,blat.proc3829883.chain_3402,blat.proc3829883.chain_3405	3	STRG.26528.1,STRG.26528.3,STRG.26528.4,STRG.26528.6,Trinity_GG_14654_c0_g1_i10,Trinity_GG_14654_c0_g1_i3,Trinity_GG_14654_c0_g1_i7,blat.proc3829883.chain_3403,blat.proc3829883.chain_3404,blat.proc3829883.chain_3406,blat.proc3829883.chain_3407,blat.proc3829883.chain_3408	12
scaffold_8	retained_intron	17944235	17944477	+	asmbl_52514	none	blat.proc3829875.chain_3080,blat.proc3829875.chain_3082	2	STRG.10698.1,blat.proc3829875.chain_3081	2
scaffold_17	starts_in_intron	9942619	9942619	+	asmbl_18256	none	Trinity_GG_11273_c0_g1_i2,blat.proc3829881.chain_1388	2	STRG.20600.1,Trinity_GG_11273_c0_g1_i1,blat.proc3829881.chain_1385,blat.proc3829881.chain_1387	4
scaffold_6	ends_in_intron	3806711	3806711	+	asmbl_46808,asmbl_46811,asmbl_46812	none	STRG.7379.1,STRG.7379.3,blat.proc3829873.chain_3520	3	STRG.7379.2,STRG.7379.4,STRG.7379.5	3
scaffold_17	alt_acceptor	10050203	10050204	+	asmbl_18289	none	blat.proc3829881.chain_1429	1	STRG.20609.2,blat.proc3829881.chain_1432	2
scaffold_21	retained_intron	5598203	5598331	-	asmbl_27710	none	Trinity_GG_30401_c0_g1_i1,blat.proc3829899.chain_1082	2	STRG.24081.1,STRG.24081.2,Trinity_GG_30401_c0_g1_i2,Trinity_GG_30401_c0_g1_i3,blat.proc3829899.chain_1083,blat.proc3829899.chain_1084	6
scaffold_21	alt_acceptor	2267906	2267907	+	asmbl_28395	none	STRG.23835.2	1	STRG.23835.1,blat.proc3829883.chain_930	2
scaffold_5	retained_intron	2536271	2536552	+	asmbl_43837	none	STRG.5769.2,blat.proc3829873.chain_1952	2	STRG.5769.1,STRG.5769.4,blat.proc3829873.chain_1954,blat.proc3829873.chain_1955	4
scaffold_20	alt_acceptor	7797215	7797216	-	asmbl_26839	none	STRG.23311.2	1	STRG.23311.1	1
scaffold_1	alt_donor	16839774	16839775	-	asmbl_1020	none	STRG.1181.2	1	STRG.1181.1,blat.proc3829887.chain_1030	2
scaffold_12	starts_in_intron	12016956	12016956	+	asmbl_8935,asmbl_8938	none	Trinity_GG_8284_c0_g1_i2,Trinity_GG_8284_c0_g1_i5,blat.proc3829877.chain_3492,blat.proc3829877.chain_3493,blat.proc3829877.chain_3494	5	STRG.15103.1,STRG.15103.2,Trinity_GG_8284_c0_g1_i3,Trinity_GG_8284_c0_g1_i7,blat.proc3829877.chain_3495,blat.proc3829877.chain_3496	6
scaffold_3	starts_in_intron	5865850	5865850	+	asmbl_40045	none	blat.proc3829871.chain_3330	1	STRG.3242.1,blat.proc3829871.chain_3331	2
scaffold_11	skipped_exon	3024461	3026445	+	asmbl_5357	none	STRG.13420.1,blat.proc3829877.chain_1819	2	STRG.13420.2,blat.proc3829877.chain_1818	2
scaffold_9	ends_in_intron	17489095	17489095	-	asmbl_55615	none	Trinity_GG_23572_c0_g1_i1,blat.proc3829893.chain_245	2	STRG.11837.1,STRG.11837.2,blat.proc3829893.chain_244,blat.proc3829893.chain_246	4
scaffold_24	starts_in_intron	444562	444562	+	asmbl_32024	none	Trinity_GG_14559_c0_g1_i8,blat.proc3829883.chain_3263	2	STRG.26319.1,blat.proc3829883.chain_3261,blat.proc3829883.chain_3262	3
scaffold_8	ends_in_intron	3329174	3329174	+	asmbl_51746	none	Trinity_GG_5458_c0_g2_i2,blat.proc3829875.chain_2300	2	STRG.9826.1,blat.proc3829875.chain_2299	2
scaffold_13	alt_donor	6415710	6415711	+	asmbl_10919	none	STRG.15918.2	1	STRG.15918.1	1
scaffold_19	ends_in_intron	12468589	12468589	-	asmbl_21708	none	blat.proc3829897.chain_3302	1	STRG.22565.1,STRG.22565.2,blat.proc3829897.chain_3303,blat.proc3829897.chain_3305	4
scaffold_446	retained_exon	5601	5738	+	asmbl_43693	none	STRG.30303.1,blat.proc3829885.chain_3342	2	STRG.30303.2,blat.proc3829885.chain_3341	2
scaffold_20	alt_acceptor	5544467	5544468	+	asmbl_25776	none	STRG.23164.1	1	STRG.23164.2	1
scaffold_11	spliced_intron	17086528	17087549	-	asmbl_7224,asmbl_7225,asmbl_7229	none	STRG.14362.1,STRG.14362.4,STRG.14362.5,blat.proc3829893.chain_2767	4	STRG.14362.6	1
scaffold_6	spliced_intron	10724279	10724368	+	asmbl_47227,asmbl_47228	none	STRG.7885.1,STRG.7885.2,blat.proc3829875.chain_260,blat.proc3829875.chain_261	4	STRG.7885.3,blat.proc3829875.chain_259	2
scaffold_12	alt_donor	14989629	14989630	-	asmbl_8156	none	STRG.15282.4,Trinity_GG_25571_c0_g1_i2,blat.proc3829893.chain_3743	3	STRG.15282.1,STRG.15282.3,Trinity_GG_25571_c0_g1_i1,Trinity_GG_25571_c0_g1_i3,blat.proc3829893.chain_3740,blat.proc3829893.chain_3742	6
scaffold_8	alt_acceptor	17362678	17362679	-	asmbl_53462	none	STRG.10649.1,blat.proc3829891.chain_2815	2	STRG.10649.2,blat.proc3829891.chain_2814	2
scaffold_14	spliced_intron	5791100	5791212	-	asmbl_13074	none	STRG.17031.1,blat.proc3829895.chain_1731	2	Trinity_GG_26569_c1_g2_i1,blat.proc3829895.chain_1734	2
scaffold_2	alt_acceptor	7827162	7827163	-	asmbl_23304	none	STRG.2079.2,Trinity_GG_18172_c0_g1_i3,blat.proc3829887.chain_1977	3	STRG.2079.1,Trinity_GG_18172_c0_g1_i2,blat.proc3829887.chain_1978	3
scaffold_3	retained_intron	5951042	5951165	-	asmbl_38835,asmbl_38838	none	STRG.3255.3,STRG.3255.6,blat.proc3829887.chain_3046,blat.proc3829887.chain_3049	4	STRG.3255.1,STRG.3255.2,blat.proc3829887.chain_3044,blat.proc3829887.chain_3045,blat.proc3829887.chain_3048	5
scaffold_6	starts_in_intron	10141505	10141505	-	asmbl_48591	none	blat.proc3829891.chain_76	1	STRG.7842.1,blat.proc3829891.chain_75	2
scaffold_20	ends_in_intron	9784247	9784247	+	asmbl_26054	none	blat.proc3829883.chain_623	1	STRG.23509.1,blat.proc3829883.chain_622	2
scaffold_2	starts_in_intron	1783416	1783416	-	asmbl_22895	none	STRG.1638.1	1	STRG.1638.2	1
scaffold_13	alt_donor	3478917	3478918	+	asmbl_10677	none	STRG.15641.1,blat.proc3829879.chain_311	2	STRG.15641.2	1
scaffold_27	spliced_intron	6782467	6782627	-	asmbl_37036	none	STRG.29027.3,blat.proc3829901.chain_2193	2	Trinity_GG_33279_c0_g1_i1,blat.proc3829901.chain_2192	2
scaffold_25	alt_donor	10043774	10043775	-	asmbl_34505	none	STRG.27786.2	1	STRG.27786.1	1
scaffold_10	alternate_exon	10427816	10428296	-	asmbl_3637,asmbl_3638	none	STRG.12721.2,Trinity_GG_24127_c0_g1_i2,blat.proc3829893.chain_1225	3	STRG.12721.1,STRG.12721.3,Trinity_GG_24127_c0_g1_i3,blat.proc3829893.chain_1224,blat.proc3829893.chain_1226	5
scaffold_5	alt_acceptor	18989363	18989364	+	asmbl_44951	none	STRG.7006.1,Trinity_GG_3849_c0_g1_i1,blat.proc3829873.chain_3152	3	STRG.7006.2	1
scaffold_13	alt_donor	5381771	5381772	+	asmbl_10824	none	STRG.15819.1,blat.proc3829879.chain_506	2	STRG.15819.2	1
scaffold_2	spliced_intron	15267111	15267282	+	asmbl_25020,asmbl_25021,asmbl_25022,asmbl_25024,asmbl_25026,asmbl_25028,asmbl_25029,asmbl_25030,asmbl_25031	none	STRG.2480.1,STRG.2480.2,STRG.2480.3,Trinity_GG_1353_c0_g1_i14,blat.proc3829871.chain_2514,blat.proc3829871.chain_2515,blat.proc3829871.chain_2516,blat.proc3829871.chain_2518,blat.proc3829871.chain_2520,blat.proc3829871.chain_2521,blat.proc3829871.chain_2522,blat.proc3829871.chain_2523	12	blat.proc3829871.chain_2517,blat.proc3829871.chain_2519	2
scaffold_17	alternate_exon	2563456	2565155	+	asmbl_17792	none	STRG.20039.1,blat.proc3829881.chain_840	2	Trinity_GG_10964_c0_g1_i5,blat.proc3829881.chain_839,blat.proc3829881.chain_841	3
scaffold_12	spliced_intron	10187619	10187770	-	asmbl_7858	none	STRG.14979.5,blat.proc3829893.chain_3400	2	STRG.14979.3,STRG.14979.4,blat.proc3829893.chain_3402	3
scaffold_11	retained_intron	6254831	6256304	+	asmbl_5582	none	STRG.13670.4,Trinity_GG_7547_c0_g1_i6,blat.proc3829877.chain_2177,blat.proc3829877.chain_2178	4	STRG.13670.1,STRG.13670.2,blat.proc3829877.chain_2180,blat.proc3829877.chain_2181	4
scaffold_10	alternate_exon	5561525	5561613	-	asmbl_3290	none	STRG.12378.2,blat.proc3829893.chain_780	2	STRG.12378.1,blat.proc3829893.chain_781	2
scaffold_4	alternate_exon	7016153	7016283	+	asmbl_42775	none	Trinity_GG_2510_c0_g1_i3	1	STRG.4534.1,Trinity_GG_2510_c0_g1_i2,blat.proc3829873.chain_891	3
scaffold_4	starts_in_intron	16570511	16570511	-	asmbl_41947	none	STRG.5231.2	1	STRG.5231.1,blat.proc3829889.chain_1305	2
scaffold_2	alt_acceptor	15287331	15287332	+	asmbl_25048	none	STRG.2476.3	1	STRG.2476.1	1
scaffold_7	starts_in_intron	15551754	15551754	-	asmbl_50192	none	blat.proc3829891.chain_1780	1	STRG.9546.1,STRG.9546.3	2
scaffold_5	starts_in_intron	5622631	5622631	-	asmbl_45436,asmbl_45439	none	blat.proc3829889.chain_1966,blat.proc3829889.chain_1969	2	STRG.5980.1,STRG.5980.2	2
scaffold_17	retained_intron	2740165	2740685	-	asmbl_18824	none	STRG.20064.2,Trinity_GG_28285_c1_g1_i1,blat.proc3829897.chain_1037	3	STRG.20064.1,blat.proc3829897.chain_1038	2
scaffold_4	retained_intron	10924315	10924565	-	asmbl_41615	none	STRG.4814.2,blat.proc3829889.chain_875	2	STRG.4814.1,blat.proc3829889.chain_874	2
scaffold_19	skipped_exon	12393089	12394928	-	asmbl_21693,asmbl_21694	none	blat.proc3829897.chain_3270,blat.proc3829897.chain_3272	2	STRG.22557.1,STRG.22557.2,STRG.22557.3,blat.proc3829897.chain_3268,blat.proc3829897.chain_3269,blat.proc3829897.chain_3271	6
scaffold_3	alt_donor	3272018	3272019	-	asmbl_38717,asmbl_38720	none	STRG.3088.1,blat.proc3829887.chain_2794,blat.proc3829887.chain_2796	3	STRG.3088.2,blat.proc3829887.chain_2793	2
scaffold_3	skipped_exon	14513575	14514227	-	asmbl_39334	none	STRG.3790.1	1	STRG.3790.2,STRG.3790.3,Trinity_GG_19112_c0_g1_i1,blat.proc3829887.chain_3597	4
scaffold_16	spliced_intron	429984	430051	-	asmbl_16043,asmbl_16044,asmbl_16045,asmbl_16047,asmbl_16048,asmbl_16049,asmbl_16050,asmbl_16051,asmbl_16052,asmbl_16053,asmbl_16054	none	STRG.19039.1,blat.proc3829897.chain_17,blat.proc3829897.chain_18,blat.proc3829897.chain_20,blat.proc3829897.chain_21,blat.proc3829897.chain_22,blat.proc3829897.chain_23,blat.proc3829897.chain_24,blat.proc3829897.chain_25,blat.proc3829897.chain_26,blat.proc3829897.chain_27	11	blat.proc3829897.chain_16,blat.proc3829897.chain_19	2
scaffold_7	retained_intron	3957526	3957766	-	asmbl_49652	none	Trinity_GG_21990_c1_g1_i1,blat.proc3829891.chain_1078	2	STRG.8779.2,STRG.8779.3	2
scaffold_10	starts_in_intron	5007385	5007385	-	asmbl_3246	none	blat.proc3829893.chain_753	1	STRG.12316.1,STRG.12316.2,Trinity_GG_23874_c0_g1_i4,blat.proc3829893.chain_754,blat.proc3829893.chain_756	5
scaffold_6	alternate_exon	13273018	13273059	+	asmbl_47456	none	blat.proc3829875.chain_492	1	STRG.8085.2	1
scaffold_26	starts_in_intron	888291	888291	+	asmbl_35233	none	Trinity_GG_15384_c0_g2_i1	1	STRG.27877.3	1
scaffold_19	alt_donor	8731800	8731801	-	asmbl_21512	none	STRG.22308.1,blat.proc3829897.chain_2939	2	STRG.22308.2	1
scaffold_3	spliced_intron	5260258	5260560	-	asmbl_38797,asmbl_38798,asmbl_38799	none	STRG.3218.1,Trinity_GG_18760_c0_g1_i3,Trinity_GG_18760_c0_g1_i5,blat.proc3829887.chain_2955,blat.proc3829887.chain_2958,blat.proc3829887.chain_2959	6	Trinity_GG_18760_c0_g1_i1,blat.proc3829887.chain_2956	2
scaffold_24	starts_in_intron	71048	71048	-	asmbl_32685	none	Trinity_GG_31706_c0_g1_i3,blat.proc3829899.chain_3365	2	STRG.26297.1,blat.proc3829899.chain_3363,blat.proc3829899.chain_3364	3
scaffold_28	starts_in_intron	5390459	5390459	+	asmbl_38280,asmbl_38283,asmbl_38284	none	STRG.29664.2,STRG.29664.3,STRG.29664.4	3	STRG.29664.1,Trinity_GG_16450_c0_g1_i2,Trinity_GG_16450_c0_g1_i7,Trinity_GG_16450_c0_g1_i9,blat.proc3829885.chain_2783,blat.proc3829885.chain_2784,blat.proc3829885.chain_2787	7
scaffold_5	starts_in_intron	15525907	15525907	-	asmbl_46070	none	Trinity_GG_20771_c0_g1_i2,blat.proc3829889.chain_2752	2	STRG.6732.1,blat.proc3829889.chain_2750	2
scaffold_25	starts_in_intron	5055252	5055252	+	asmbl_33560	none	blat.proc3829885.chain_367	1	STRG.27416.1,STRG.27416.2,blat.proc3829885.chain_365,blat.proc3829885.chain_366	4
scaffold_9	starts_in_intron	11751944	11751944	+	asmbl_54357	none	Trinity_GG_6361_c1_g1_i2,blat.proc3829877.chain_198	2	STRG.11479.1,Trinity_GG_6361_c1_g1_i1,blat.proc3829877.chain_197	3
scaffold_10	alternate_exon	17176999	17178657	+	asmbl_5023	none	STRG.13154.1	1	STRG.13154.2	1
scaffold_13	spliced_intron	7192850	7192955	-	asmbl_9826,asmbl_9827	none	STRG.16001.4,blat.proc3829895.chain_842	2	Trinity_GG_26037_c0_g1_i6,blat.proc3829895.chain_845	2
scaffold_12	skipped_exon	8915537	8916290	+	asmbl_8805	none	STRG.14884.2	1	STRG.14884.1,blat.proc3829877.chain_3414	2
scaffold_22	alt_acceptor	6121182	6121183	-	asmbl_30077	none	STRG.24954.3	1	STRG.24954.1,STRG.24954.2,blat.proc3829899.chain_2061	3
scaffold_15	starts_in_intron	8984217	8984217	+	asmbl_14319	none	STRG.18435.2	1	STRG.18435.1,blat.proc3829879.chain_3025,blat.proc3829879.chain_3027	3
scaffold_8	skipped_exon	11581693	11582127	+	asmbl_52228,asmbl_52230	none	STRG.10355.1,blat.proc3829875.chain_2769,blat.proc3829875.chain_2771	3	blat.proc3829875.chain_2770	1
scaffold_6	spliced_intron	1498115	1498676	+	asmbl_46664	none	STRG.7184.3	1	STRG.7184.1,Trinity_GG_3973_c1_g1_i2,blat.proc3829873.chain_3355	3
scaffold_10	skipped_exon	13960219	13960633	-	asmbl_3842	none	STRG.12974.2,blat.proc3829893.chain_1446	2	STRG.12974.1,blat.proc3829893.chain_1447	2
scaffold_8	spliced_intron	1207473	1207512	-	asmbl_52691	none	STRG.9740.1	1	STRG.9740.2	1
scaffold_1	retained_intron	12450016	12450376	+	asmbl_2203	none	STRG.856.1,blat.proc3829871.chain_881	2	STRG.856.2,STRG.856.4,STRG.856.5,Trinity_GG_494_c0_g1_i1,blat.proc3829871.chain_884	5
scaffold_12	ends_in_intron	11691790	11691790	-	asmbl_7957	none	blat.proc3829893.chain_3429	1	STRG.15080.1,blat.proc3829893.chain_3428	2
scaffold_8	starts_in_intron	12323522	12323522	-	asmbl_53189,asmbl_53192	none	STRG.10399.3,blat.proc3829891.chain_2529,blat.proc3829891.chain_2532	3	STRG.10399.1,STRG.10399.2,STRG.10399.4,blat.proc3829891.chain_2527,blat.proc3829891.chain_2530,blat.proc3829891.chain_2531	6
scaffold_27	spliced_intron	5320907	5320932	-	asmbl_36959	none	STRG.28931.1	1	Trinity_GG_33228_c0_g1_i1,blat.proc3829901.chain_2115	2
scaffold_16	alternate_exon	1881631	1884654	+	asmbl_16892,asmbl_16893,asmbl_16894	none	STRG.19097.1,STRG.19097.2,STRG.19097.3,Trinity_GG_10477_c0_g1_i1,Trinity_GG_10480_c0_g1_i1,Trinity_GG_10486_c0_g1_i2,blat.proc3829879.chain_3719,blat.proc3829879.chain_3722,blat.proc3829879.chain_3728	9	Trinity_GG_10486_c0_g1_i5,blat.proc3829879.chain_3730	2
scaffold_19	retained_intron	8755862	8756122	+	asmbl_22353,asmbl_22354	none	blat.proc3829881.chain_3260	1	STRG.22316.1,blat.proc3829881.chain_3261	2
scaffold_21	alternate_exon	5775965	5779864	-	asmbl_27719	none	STRG.24099.2,blat.proc3829899.chain_1199	2	blat.proc3829899.chain_1202	1
scaffold_5	retained_intron	9582795	9582912	-	asmbl_45673	none	Trinity_GG_20553_c0_g1_i2,blat.proc3829889.chain_2362	2	STRG.6268.1,Trinity_GG_20553_c0_g1_i1,blat.proc3829889.chain_2363,blat.proc3829889.chain_2364,blat.proc3829889.chain_2365	5
scaffold_1	starts_in_intron	12756558	12756558	-	asmbl_764	none	Trinity_GG_17461_c0_g2_i1,blat.proc3829887.chain_753	2	STRG.894.1,blat.proc3829887.chain_750	2
scaffold_94	alt_acceptor	8239	8240	-	asmbl_55803	none	STRG.30111.2,blat.proc3829901.chain_3665	2	STRG.30111.1,blat.proc3829901.chain_3218	2
scaffold_21	retained_exon	2951596	2951683	+	asmbl_28449	none	Trinity_GG_13236_c0_g1_i3,blat.proc3829883.chain_1038	2	STRG.23906.1,STRG.23906.2,blat.proc3829883.chain_1035,blat.proc3829883.chain_1037	4
scaffold_5	alt_donor	16793296	16793297	-	asmbl_46157	none	STRG.6861.3	1	STRG.6861.2,blat.proc3829889.chain_2904	2
scaffold_7	alt_donor	15647597	15647598	+	asmbl_51338	none	STRG.9551.1,blat.proc3829875.chain_2033	2	STRG.9551.2,STRG.9551.3,blat.proc3829875.chain_2030	3
scaffold_1490	alt_donor	538	539	-	asmbl_13886	none	STRG.30588.2	1	STRG.30588.1	1
scaffold_1	spliced_intron	11173731	11174136	+	asmbl_2065,asmbl_2066	none	STRG.743.3,STRG.743.5,blat.proc3829871.chain_815,blat.proc3829871.chain_824	4	STRG.743.1,STRG.743.4,blat.proc3829871.chain_818,blat.proc3829871.chain_820,blat.proc3829871.chain_821,blat.proc3829871.chain_825	6
scaffold_6	ends_in_intron	5195884	5195884	+	asmbl_46869,asmbl_46871	none	blat.proc3829873.chain_3584,blat.proc3829873.chain_3588	2	STRG.7489.2,STRG.7489.3,STRG.7489.4,Trinity_GG_4091_c0_g1_i10,blat.proc3829873.chain_3581,blat.proc3829873.chain_3583,blat.proc3829873.chain_3585,blat.proc3829873.chain_3587	8
scaffold_23	alt_donor	1140103	1140104	-	asmbl_31344,asmbl_31347,asmbl_31348,asmbl_31349	none	STRG.25575.1,STRG.25575.2,blat.proc3829899.chain_2600,blat.proc3829899.chain_2601,blat.proc3829899.chain_2603	5	blat.proc3829899.chain_2599	1
scaffold_12	skipped_exon	2926206	2928443	-	asmbl_7467	none	STRG.14515.5	1	STRG.14515.1,blat.proc3829893.chain_2936	2
scaffold_2	retained_intron	950492	950626	+	asmbl_24191	none	blat.proc3829871.chain_1647	1	STRG.1574.1,STRG.1574.2,STRG.1574.3,STRG.1574.4	4
scaffold_6	alt_donor	1752143	1752144	-	asmbl_48061,asmbl_48062,asmbl_48063,asmbl_48065,asmbl_48067,asmbl_48068,asmbl_48069	none	STRG.7224.1,STRG.7224.4,STRG.7224.5,STRG.7224.7,STRG.7224.8,blat.proc3829889.chain_3170,blat.proc3829889.chain_3171,blat.proc3829889.chain_3174,blat.proc3829889.chain_3175	9	STRG.7224.3,STRG.7224.6,blat.proc3829889.chain_3172,blat.proc3829889.chain_3176	4
scaffold_4	alt_donor	2201103	2201104	-	asmbl_41136	none	STRG.4215.2	1	STRG.4215.1,blat.proc3829889.chain_328,blat.proc3829889.chain_329	3
scaffold_8	skipped_exon	11853070	11855193	+	asmbl_52269,asmbl_52270,asmbl_52276	none	STRG.10382.3,blat.proc3829875.chain_2968,blat.proc3829875.chain_2975,blat.proc3829875.chain_2979	4	blat.proc3829875.chain_2980	1
scaffold_11	retained_intron	10322368	10322453	+	asmbl_5900,asmbl_5901	none	STRG.14028.2,blat.proc3829877.chain_2516	2	STRG.14028.1,blat.proc3829877.chain_2517	2
scaffold_19	spliced_intron	8124919	8125012	-	asmbl_21484	none	STRG.22253.1,Trinity_GG_29404_c0_g1_i2,blat.proc3829897.chain_2968	3	blat.proc3829897.chain_2969	1
scaffold_24	spliced_intron	6297543	6297691	+	asmbl_32308	none	STRG.26668.1,Trinity_GG_14747_c0_g1_i1,blat.proc3829883.chain_3577	3	STRG.26668.3,Trinity_GG_14747_c0_g1_i3,blat.proc3829883.chain_3576	3
scaffold_8	spliced_intron	5554249	5554404	-	asmbl_52827,asmbl_52829	none	STRG.9977.1,blat.proc3829891.chain_2061,blat.proc3829891.chain_2062	3	blat.proc3829891.chain_2058,blat.proc3829891.chain_2060	2
scaffold_16	alt_acceptor	9556391	9556392	+	asmbl_17290,asmbl_17291	none	STRG.19542.1,Trinity_GG_10701_c0_g1_i1,blat.proc3829881.chain_413,blat.proc3829881.chain_415	4	Trinity_GG_10701_c0_g1_i3,blat.proc3829881.chain_414	2
scaffold_16	spliced_intron	293907	294060	-	asmbl_16014	none	STRG.19013.1,blat.proc3829897.chain_50,blat.proc3829897.chain_51	3	STRG.19013.2,blat.proc3829897.chain_52	2
scaffold_6	starts_in_intron	3228289	3228289	+	asmbl_46767	none	Trinity_GG_3975_c1_g1_i1,blat.proc3829873.chain_3360	2	STRG.7322.2,STRG.7322.3,blat.proc3829873.chain_3361,blat.proc3829873.chain_3362	4
scaffold_18	skipped_exon	2087237	2087931	-	asmbl_19743	none	STRG.21091.2	1	STRG.21091.1,blat.proc3829897.chain_2002	2
scaffold_21	alt_donor	6614543	6614544	-	asmbl_27763	none	STRG.24172.1,blat.proc3829899.chain_1207	2	STRG.24172.2	1
scaffold_21	alt_donor	6614548	6614549	-	asmbl_27764	none	STRG.24172.2	1	STRG.24172.1,blat.proc3829899.chain_1207	2
scaffold_26	ends_in_intron	3672255	3672255	+	asmbl_35345	none	blat.proc3829885.chain_1028	1	STRG.28032.1,blat.proc3829885.chain_1029,blat.proc3829885.chain_1030,blat.proc3829885.chain_1032,blat.proc3829885.chain_1033	5
scaffold_10	alt_acceptor	8897245	8897246	-	asmbl_3535,asmbl_3537,asmbl_3541	none	blat.proc3829893.chain_1127,blat.proc3829893.chain_1132,blat.proc3829893.chain_1134	3	STRG.12629.1,blat.proc3829893.chain_1125,blat.proc3829893.chain_1129,blat.proc3829893.chain_1130,blat.proc3829893.chain_1133	5
scaffold_6	alt_acceptor	18836632	18836633	+	asmbl_47795,asmbl_47796,asmbl_47797,asmbl_47798,asmbl_47799,asmbl_47800,asmbl_47801,asmbl_47802	none	STRG.8547.1,STRG.8547.2,STRG.8547.3,STRG.8547.4,STRG.8547.5,Trinity_GG_4669_c0_g1_i6,blat.proc3829875.chain_887,blat.proc3829875.chain_888,blat.proc3829875.chain_889,blat.proc3829875.chain_890,blat.proc3829875.chain_891	11	STRG.8547.6	1
scaffold_1	retained_exon	13565843	13565951	-	asmbl_837	none	blat.proc3829887.chain_857	1	STRG.971.1	1
scaffold_5	retained_exon	238215	239201	-	asmbl_45151	none	STRG.5594.1,Trinity_GG_20172_c0_g1_i1,blat.proc3829889.chain_1710	3	STRG.5594.2	1
scaffold_19	retained_intron	12492311	12492484	+	asmbl_22619	none	blat.proc3829881.chain_3536	1	STRG.22568.1,STRG.22568.3,STRG.22568.4,STRG.22568.5,STRG.22568.6,blat.proc3829881.chain_3533,blat.proc3829881.chain_3534,blat.proc3829881.chain_3535,blat.proc3829881.chain_3537	9
scaffold_8	starts_in_intron	4961478	4961478	-	asmbl_52813	none	blat.proc3829891.chain_2103	1	STRG.9963.1,blat.proc3829891.chain_2104,blat.proc3829891.chain_2105,blat.proc3829891.chain_2107	4
scaffold_13	alt_donor	6140069	6140070	-	asmbl_9734	none	STRG.15904.2	1	STRG.15904.3,Trinity_GG_25956_c0_g1_i1,blat.proc3829895.chain_670	3
scaffold_1	alternate_exon	4272409	4272542	+	asmbl_1660	none	STRG.259.4	1	STRG.259.1,STRG.259.2,STRG.259.3,blat.proc3829871.chain_321	4
scaffold_24	retained_intron	10346483	10346648	-	asmbl_33172	none	STRG.26976.2	1	STRG.26976.1	1
scaffold_25	retained_intron	5158234	5158408	-	asmbl_34227	none	blat.proc3829901.chain_742,blat.proc3829901.chain_749	2	STRG.27422.1,blat.proc3829901.chain_746,blat.proc3829901.chain_747	3
scaffold_14	alternate_exon	2299145	2299297	+	asmbl_11832	none	STRG.16832.1,blat.proc3829879.chain_1488	2	STRG.16832.2	1
scaffold_7	retained_exon	18393031	18394507	-	asmbl_50289,asmbl_50296	none	Trinity_GG_22427_c0_g1_i11,blat.proc3829891.chain_1869,blat.proc3829891.chain_1875	3	STRG.9659.2,STRG.9659.4,blat.proc3829891.chain_1871,blat.proc3829891.chain_1873	4
scaffold_2	alt_acceptor	4237990	4237991	-	asmbl_23082	none	STRG.1859.3	1	STRG.1859.1,STRG.1859.2,blat.proc3829887.chain_1733,blat.proc3829887.chain_1734	4
scaffold_21	alt_donor	2484563	2484564	-	asmbl_27492,asmbl_27493	none	STRG.23859.1,STRG.23859.4,Trinity_GG_30317_c0_g1_i2,blat.proc3829899.chain_950	4	STRG.23859.3	1
scaffold_6	alt_acceptor	2681757	2681758	-	asmbl_48094	none	STRG.7253.1,blat.proc3829889.chain_3239	2	STRG.7253.2	1
scaffold_6	retained_intron	12413720	12414317	-	asmbl_48736,asmbl_48737,asmbl_48738,asmbl_48739	none	STRG.7990.1,STRG.7990.2,STRG.7990.4,STRG.7990.5,blat.proc3829891.chain_292,blat.proc3829891.chain_293,blat.proc3829891.chain_294	7	STRG.7990.3	1
scaffold_14	alt_donor	6450529	6450530	-	asmbl_13117	none	STRG.17077.2	1	STRG.17077.1,Trinity_GG_26609_c0_g1_i3,blat.proc3829895.chain_1807,blat.proc3829895.chain_1808,blat.proc3829895.chain_1809	5
scaffold_5	ends_in_intron	6565368	6565368	+	asmbl_44095	none	blat.proc3829873.chain_2182	1	STRG.6047.2,STRG.6047.3	2
scaffold_1	skipped_exon	853703	854190	+	asmbl_1420,asmbl_1423,asmbl_1424,asmbl_1425	none	STRG.42.2,STRG.42.3,STRG.42.4,STRG.42.6	4	STRG.42.5	1
scaffold_15	retained_exon	2798116	2798143	+	asmbl_14021	none	blat.proc3829879.chain_2695	1	STRG.18051.2,blat.proc3829879.chain_2697	2
scaffold_510	retained_intron	3010	3063	-	asmbl_46464,asmbl_46466	none	STRG.30341.3,blat.proc3829901.chain_3390,blat.proc3829901.chain_3391	3	STRG.30341.1	1
scaffold_13	alt_donor	14443936	14443937	-	asmbl_10157	none	STRG.16487.2,blat.proc3829895.chain_1206	2	STRG.16487.1,blat.proc3829895.chain_1205	2
scaffold_9	alt_donor	13278982	13278983	+	asmbl_54473	none	STRG.11615.2	1	STRG.11615.3	1
scaffold_16	starts_in_intron	125054	125054	+	asmbl_16788	none	Trinity_GG_10419_c0_g1_i5,blat.proc3829879.chain_3617	2	STRG.18995.1,Trinity_GG_10419_c0_g1_i4,blat.proc3829879.chain_3618	3
scaffold_13	alternate_exon	15510175	15510435	+	asmbl_11490	none	STRG.16580.1,blat.proc3829879.chain_1335	2	STRG.16580.4	1
scaffold_19	alt_donor	7123941	7123942	+	asmbl_22253	none	STRG.22199.1,blat.proc3829881.chain_3139	2	STRG.22199.2,blat.proc3829881.chain_3140	2
scaffold_12	retained_intron	6396998	6397091	-	asmbl_7662	none	blat.proc3829893.chain_3146	1	STRG.14724.1,blat.proc3829893.chain_3147	2
scaffold_2	ends_in_intron	18611946	18611946	-	asmbl_23820	none	Trinity_GG_18496_c0_g2_i1,blat.proc3829887.chain_2517	2	STRG.2736.3,blat.proc3829887.chain_2518	2
scaffold_17	starts_in_intron	4005976	4005976	+	asmbl_17889	none	Trinity_GG_11059_c0_g1_i3,blat.proc3829881.chain_1001	2	STRG.20150.1,blat.proc3829881.chain_1000,blat.proc3829881.chain_1002	3
scaffold_24	alt_acceptor	10089351	10089352	+	asmbl_32541	none	blat.proc3829901.chain_242	1	STRG.26956.2	1
scaffold_2	retained_intron	943318	943692	+	asmbl_24184	none	Trinity_GG_901_c3_g1_i2,blat.proc3829871.chain_1658	2	Trinity_GG_901_c3_g1_i1,blat.proc3829871.chain_1657	2
scaffold_14	alt_acceptor	7999636	7999637	+	asmbl_12159	none	STRG.17198.3,Trinity_GG_9470_c0_g1_i1,blat.proc3829879.chain_1937	3	STRG.17198.1,STRG.17198.2,blat.proc3829879.chain_1938	3
scaffold_28	alt_donor	2317726	2317727	+	asmbl_38054	none	STRG.29386.1,blat.proc3829885.chain_2513	2	STRG.29386.2,blat.proc3829885.chain_2512	2
scaffold_21	starts_in_intron	9867235	9867235	-	asmbl_27999	none	STRG.24438.1	1	STRG.24438.2	1
scaffold_9	spliced_intron	3912783	3912902	-	asmbl_54912,asmbl_54914	none	STRG.10999.1,STRG.10999.2,Trinity_GG_23099_c0_g1_i1,blat.proc3829891.chain_3141	4	Trinity_GG_23099_c0_g1_i2,blat.proc3829891.chain_3140	2
scaffold_1	spliced_intron	14276749	14276836	+	asmbl_2342,asmbl_2343,asmbl_2344,asmbl_2347	none	STRG.1020.1,STRG.1020.2,STRG.1020.3,Trinity_GG_617_c0_g1_i1,Trinity_GG_617_c0_g1_i4,Trinity_GG_617_c0_g1_i5,blat.proc3829871.chain_1109,blat.proc3829871.chain_1110,blat.proc3829871.chain_1111	9	Trinity_GG_617_c0_g1_i2,blat.proc3829871.chain_1112	2
scaffold_20	starts_in_intron	9646811	9646811	+	asmbl_26030	none	STRG.23493.2,blat.proc3829883.chain_568	2	STRG.23493.1,blat.proc3829883.chain_569	2
scaffold_17	spliced_intron	7046365	7047019	+	asmbl_18018	none	blat.proc3829881.chain_1119	1	Trinity_GG_11134_c0_g1_i1	1
scaffold_10	starts_in_intron	950254	950254	+	asmbl_4176	none	Trinity_GG_6645_c0_g1_i5,blat.proc3829877.chain_652	2	STRG.11969.1,STRG.11969.2,Trinity_GG_6645_c0_g1_i1,Trinity_GG_6645_c0_g1_i3,Trinity_GG_6645_c0_g1_i4,Trinity_GG_6645_c0_g1_i6,blat.proc3829877.chain_649,blat.proc3829877.chain_650,blat.proc3829877.chain_651,blat.proc3829877.chain_653	10
scaffold_19	spliced_intron	12491455	12492135	+	asmbl_22620	none	blat.proc3829881.chain_3538	1	STRG.22568.3,blat.proc3829881.chain_3534	2
scaffold_4	spliced_intron	16479929	16480208	-	asmbl_41926,asmbl_41927,asmbl_41928	none	STRG.5226.1,STRG.5226.2,STRG.5226.3,blat.proc3829889.chain_1289,blat.proc3829889.chain_1292,blat.proc3829889.chain_1293	6	Trinity_GG_19942_c2_g1_i1,blat.proc3829889.chain_1295	2
scaffold_17	alt_donor	10037313	10037314	-	asmbl_19272,asmbl_19273	none	STRG.20608.5,Trinity_GG_28623_c0_g1_i2,Trinity_GG_28623_c0_g1_i4,blat.proc3829897.chain_1586,blat.proc3829897.chain_1587	5	STRG.20608.3	1
scaffold_22	alternate_exon	476494	479749	+	asmbl_29146	none	STRG.24678.1,Trinity_GG_13637_c0_g1_i2,blat.proc3829883.chain_1713	3	Trinity_GG_13637_c0_g1_i1,blat.proc3829883.chain_1714	2
scaffold_14	retained_intron	3588641	3588784	+	asmbl_11926,asmbl_11928	none	STRG.16927.1,STRG.16927.4,blat.proc3829879.chain_1656	3	STRG.16927.2,blat.proc3829879.chain_1658	2
scaffold_17	alt_donor	13072771	13072772	-	asmbl_19395	none	STRG.20791.3	1	STRG.20791.2,blat.proc3829897.chain_1718	2
scaffold_14	ends_in_intron	1101089	1101089	+	asmbl_11779	none	Trinity_GG_9222_c0_g1_i6,blat.proc3829879.chain_1480	2	STRG.16756.1,STRG.16756.2,STRG.16756.3,Trinity_GG_9222_c0_g1_i2,blat.proc3829879.chain_1478,blat.proc3829879.chain_1479,blat.proc3829879.chain_1481,blat.proc3829879.chain_1482	8
scaffold_17	skipped_exon	603900	606582	-	asmbl_18675	none	STRG.19894.1	1	STRG.19894.2,STRG.19894.3	2
scaffold_13	alt_acceptor	4244432	4244433	-	asmbl_9573,asmbl_9574,asmbl_9575,asmbl_9577	none	STRG.15737.1,STRG.15737.2,STRG.15737.3,blat.proc3829895.chain_477,blat.proc3829895.chain_478,blat.proc3829895.chain_479,blat.proc3829895.chain_480	7	STRG.15737.4,STRG.15737.5	2
scaffold_7	spliced_intron	9782875	9783156	-	asmbl_49876	none	STRG.9164.2,blat.proc3829891.chain_1404	2	STRG.9164.1,STRG.9164.3,STRG.9164.4,blat.proc3829891.chain_1403	4
scaffold_7	alternate_exon	8173614	8178837	+	asmbl_50844	none	STRG.9039.1,blat.proc3829875.chain_1470	2	Trinity_GG_5002_c0_g1_i1,blat.proc3829875.chain_1468	2
scaffold_10	ends_in_intron	332646	332646	-	asmbl_2852	none	STRG.11909.2	1	STRG.11909.1,blat.proc3829893.chain_340	2
scaffold_9	retained_intron	16738922	16739205	-	asmbl_55586	none	Trinity_GG_23557_c0_g1_i4,blat.proc3829893.chain_222	2	STRG.11811.1,Trinity_GG_23557_c0_g1_i2,blat.proc3829893.chain_220	3
scaffold_9	retained_intron	17454872	17454904	+	asmbl_54606	none	STRG.11830.1,Trinity_GG_6564_c0_g1_i1,Trinity_GG_6564_c0_g1_i2,blat.proc3829877.chain_513	4	STRG.11830.2	1
scaffold_24	alt_donor	6728216	6728217	-	asmbl_32955,asmbl_32956,asmbl_32960,asmbl_32961	none	STRG.26704.1,STRG.26704.2,blat.proc3829901.chain_20,blat.proc3829901.chain_21,blat.proc3829901.chain_22,blat.proc3829901.chain_23	6	blat.proc3829901.chain_25	1
scaffold_6	retained_intron	1749516	1750052	-	asmbl_48060,asmbl_48062,asmbl_48068,asmbl_48069	none	STRG.7224.1,STRG.7224.5,Trinity_GG_21030_c0_g1_i2,blat.proc3829889.chain_3171,blat.proc3829889.chain_3173,blat.proc3829889.chain_3174	6	STRG.7224.2,STRG.7224.3,STRG.7224.4,STRG.7224.6,blat.proc3829889.chain_3169,blat.proc3829889.chain_3170	6
scaffold_11	starts_in_intron	8087294	8087294	+	asmbl_5685	none	Trinity_GG_7566_c0_g1_i1,blat.proc3829877.chain_2219	2	STRG.13805.1,Trinity_GG_7566_c0_g1_i2,blat.proc3829877.chain_2220	3
scaffold_27	retained_intron	3624384	3624770	+	asmbl_36176,asmbl_36178	none	Trinity_GG_15953_c0_g1_i6,blat.proc3829885.chain_1905,blat.proc3829885.chain_1907	3	STRG.28811.1,Trinity_GG_15953_c0_g1_i2,blat.proc3829885.chain_1904	3
scaffold_19	alternate_exon	11773813	11773852	+	asmbl_22526	none	STRG.22491.2,Trinity_GG_12441_c0_g1_i1,blat.proc3829881.chain_3435	3	STRG.22491.1,Trinity_GG_12441_c0_g1_i2,blat.proc3829881.chain_3436	3
scaffold_4	starts_in_intron	17029176	17029176	+	asmbl_43363	none	blat.proc3829873.chain_1530	1	STRG.5305.2,STRG.5305.3,blat.proc3829873.chain_1531,blat.proc3829873.chain_1532	4
scaffold_14	retained_intron	8295304	8295419	-	asmbl_13265,asmbl_13266	none	STRG.17236.1,blat.proc3829895.chain_1939,blat.proc3829895.chain_1940	3	blat.proc3829895.chain_1941	1
scaffold_1	alt_donor	20348390	20348391	+	asmbl_2608	none	STRG.1398.3	1	STRG.1398.2,STRG.1398.4,STRG.1398.6,blat.proc3829871.chain_1446,blat.proc3829871.chain_1452	5
scaffold_23	starts_in_intron	6907141	6907141	-	asmbl_31709	none	blat.proc3829899.chain_3042	1	STRG.25998.1,STRG.25998.2,STRG.25998.3,blat.proc3829899.chain_3043,blat.proc3829899.chain_3044	5
scaffold_10	retained_exon	2658975	2658996	-	asmbl_3028	none	STRG.12069.2	1	STRG.12069.1,Trinity_GG_23707_c0_g1_i2,blat.proc3829893.chain_483	3
scaffold_22	alternate_exon	6126988	6127862	+	asmbl_29399	none	blat.proc3829883.chain_1999	1	STRG.24955.7	1
scaffold_4	alt_acceptor	19591639	19591640	-	asmbl_42210	none	blat.proc3829889.chain_1637	1	blat.proc3829889.chain_1636	1
scaffold_1	alt_acceptor	20134876	20134877	-	asmbl_1171	none	STRG.1381.3	1	STRG.1381.1,STRG.1381.2	2
scaffold_13	starts_in_intron	7506361	7506361	-	asmbl_9847	none	STRG.16034.3,blat.proc3829895.chain_819	2	STRG.16034.1,blat.proc3829895.chain_813,blat.proc3829895.chain_822	3
scaffold_22	alternate_exon	6528141	6529301	+	asmbl_29409	none	STRG.24982.1,blat.proc3829883.chain_2043	2	STRG.24982.2	1
scaffold_10	starts_in_intron	3351957	3351957	-	asmbl_3110	none	blat.proc3829893.chain_613	1	STRG.12149.1,blat.proc3829893.chain_615	2
scaffold_25	alt_donor	10043783	10043784	-	asmbl_34506	none	STRG.27786.1	1	STRG.27786.2	1
scaffold_7	ends_in_intron	13244249	13244249	+	asmbl_51219	none	blat.proc3829875.chain_1862	1	STRG.9429.1,STRG.9429.2	2
scaffold_22	starts_in_intron	3040427	3040427	+	asmbl_29245	none	blat.proc3829883.chain_1824	1	STRG.24775.1,blat.proc3829883.chain_1826	2
scaffold_27	starts_in_intron	6932126	6932126	+	asmbl_36377	none	blat.proc3829885.chain_2164	1	STRG.29038.1,blat.proc3829885.chain_2163	2
scaffold_14	starts_in_intron	15329033	15329033	+	asmbl_12578	none	Trinity_GG_9720_c0_g1_i2,blat.proc3829879.chain_2361	2	STRG.17744.1,blat.proc3829879.chain_2360	2
scaffold_14	starts_in_intron	11447326	11447326	+	asmbl_12359	none	blat.proc3829879.chain_2137	1	STRG.17465.1,blat.proc3829879.chain_2136	2
scaffold_9	spliced_intron	9688546	9688647	-	asmbl_55200,asmbl_55201	none	STRG.11334.1,STRG.11334.2,blat.proc3829891.chain_3512,blat.proc3829891.chain_3515	4	blat.proc3829891.chain_3513,blat.proc3829891.chain_3514	2
scaffold_8	spliced_intron	7484208	7484297	-	asmbl_52903	none	STRG.10067.1,blat.proc3829891.chain_2151	2	Trinity_GG_22590_c0_g1_i4,blat.proc3829891.chain_2154	2
scaffold_6	ends_in_intron	5930530	5930530	+	asmbl_46925	none	blat.proc3829873.chain_3604	1	STRG.7539.1,STRG.7539.2,blat.proc3829873.chain_3601,blat.proc3829873.chain_3602	4
scaffold_11	starts_in_intron	3254333	3254333	-	asmbl_6522	none	blat.proc3829893.chain_1869	1	STRG.13448.1,blat.proc3829893.chain_1868	2
scaffold_7	alternate_exon	8195814	8197248	+	asmbl_50850	none	STRG.9047.2,blat.proc3829875.chain_1388,blat.proc3829875.chain_1389	3	STRG.9047.1,Trinity_GG_4945_c0_g1_i3,blat.proc3829875.chain_1385,blat.proc3829875.chain_1386,blat.proc3829875.chain_1387	5
scaffold_7	alt_acceptor	7611468	7611469	-	asmbl_49764,asmbl_49766,asmbl_49767	none	STRG.9004.1,STRG.9004.2,STRG.9004.4,blat.proc3829891.chain_1278,blat.proc3829891.chain_1280	5	STRG.9004.3	1
scaffold_19	retained_intron	7364545	7364696	+	asmbl_22254	none	Trinity_GG_12270_c0_g1_i2,blat.proc3829881.chain_3136	2	STRG.22205.1,blat.proc3829881.chain_3137	2
scaffold_19	spliced_intron	13254452	13254529	-	asmbl_21848	none	blat.proc3829897.chain_3414	1	STRG.22630.1,Trinity_GG_29619_c0_g1_i1,blat.proc3829897.chain_3415	3
scaffold_12	retained_intron	4290876	4291432	-	asmbl_7520,asmbl_7522	none	STRG.14591.2,blat.proc3829893.chain_2885	2	STRG.14591.1,blat.proc3829893.chain_2884	2
scaffold_4	alt_acceptor	16139155	16139156	+	asmbl_43295	none	STRG.5189.2,blat.proc3829873.chain_1461	2	STRG.5189.1,blat.proc3829873.chain_1460	2
scaffold_2	starts_in_intron	4235546	4235546	-	asmbl_23083	none	Trinity_GG_18062_c0_g1_i4,blat.proc3829887.chain_1735	2	STRG.1859.1,STRG.1859.2,STRG.1859.3,blat.proc3829887.chain_1733,blat.proc3829887.chain_1734	5
scaffold_18	alt_donor	4633007	4633008	-	asmbl_19854	none	blat.proc3829897.chain_2051	1	STRG.21240.1,blat.proc3829897.chain_2050	2
scaffold_4	alt_acceptor	7316676	7316677	-	asmbl_41445	none	STRG.4569.2	1	STRG.4569.1	1
scaffold_8	retained_exon	11463927	11464005	+	asmbl_52216	none	STRG.10344.3	1	STRG.10344.1	1
scaffold_6	retained_intron	11463538	11463675	-	asmbl_48693	none	blat.proc3829891.chain_180	1	STRG.7935.1,blat.proc3829891.chain_179,blat.proc3829891.chain_181	3
scaffold_1	retained_exon	6831405	6831526	-	asmbl_393	none	STRG.478.1,blat.proc3829887.chain_368	2	STRG.478.2,blat.proc3829887.chain_369	2
scaffold_3	alternate_exon	6034867	6035682	-	asmbl_38835	none	STRG.3255.3,Trinity_GG_18799_c2_g2_i1,blat.proc3829887.chain_3061	3	STRG.3255.1,STRG.3255.2,STRG.3255.5,STRG.3255.7	4
scaffold_1	retained_exon	10414992	10415039	-	asmbl_595	none	STRG.680.4	1	STRG.680.2,blat.proc3829887.chain_608	2
scaffold_12	spliced_intron	7422321	7422854	-	asmbl_7713	none	STRG.14807.2,blat.proc3829893.chain_3199	2	blat.proc3829893.chain_3201	1
scaffold_5	alt_acceptor	6190083	6190084	+	asmbl_44070	none	STRG.6025.1,blat.proc3829873.chain_2223	2	STRG.6025.2,blat.proc3829873.chain_2222	2
scaffold_20	retained_intron	7103318	7104894	-	asmbl_26796	none	STRG.23268.1,Trinity_GG_29954_c0_g2_i1,blat.proc3829899.chain_227,blat.proc3829899.chain_229	4	STRG.23268.2,blat.proc3829899.chain_228	2
scaffold_2	retained_intron	14219858	14219944	-	asmbl_23599	none	blat.proc3829887.chain_2203	1	STRG.2413.1,blat.proc3829887.chain_2199,blat.proc3829887.chain_2201,blat.proc3829887.chain_2202	4
scaffold_5	ends_in_intron	47914	47914	-	asmbl_45140	none	Trinity_GG_20151_c0_g1_i2,blat.proc3829889.chain_1674	2	STRG.5563.1,blat.proc3829889.chain_1672	2
scaffold_14	spliced_intron	2374520	2375412	-	asmbl_12917,asmbl_12918,asmbl_12919,asmbl_12920,asmbl_12923	none	STRG.16839.1,STRG.16839.3,STRG.16839.4,blat.proc3829895.chain_1580,blat.proc3829895.chain_1587	5	STRG.16839.2,STRG.16839.6,Trinity_GG_26463_c0_g1_i6,blat.proc3829895.chain_1579,blat.proc3829895.chain_1585,blat.proc3829895.chain_1588	6
scaffold_18	spliced_intron	11297253	11297345	-	asmbl_20158	none	STRG.21663.1,blat.proc3829897.chain_2468	2	Trinity_GG_29109_c0_g1_i1,blat.proc3829897.chain_2466,blat.proc3829897.chain_2467	3
scaffold_5	alternate_exon	1179787	1179952	-	asmbl_45222	none	STRG.5661.2	1	STRG.5661.1,Trinity_GG_20235_c0_g1_i1,blat.proc3829889.chain_1817	3
scaffold_11	alt_acceptor	11936507	11936508	-	asmbl_7021	none	STRG.14160.2	1	STRG.14160.1,STRG.14160.3,STRG.14160.4,STRG.14160.5	4
scaffold_13	starts_in_intron	3777222	3777222	-	asmbl_9539	none	STRG.15690.1	1	blat.proc3829895.chain_432,blat.proc3829895.chain_433,blat.proc3829895.chain_443	3
scaffold_21	spliced_intron	5279754	5280675	-	asmbl_27665	none	STRG.24056.1,blat.proc3829899.chain_1144	2	STRG.24056.3,STRG.24056.4,Trinity_GG_30438_c0_g1_i4,blat.proc3829899.chain_1148	4
scaffold_28	alt_acceptor	2684460	2684461	-	asmbl_37399	none	STRG.29426.2	1	STRG.29426.1,blat.proc3829901.chain_2535	2
scaffold_6	spliced_intron	12034964	12035191	-	asmbl_48715	none	STRG.7969.1,blat.proc3829891.chain_183	2	STRG.7969.2,blat.proc3829891.chain_182	2
scaffold_1	alternate_exon	12489214	12489338	+	asmbl_2215	none	STRG.859.3	1	STRG.859.1	1
scaffold_3	alt_acceptor	13175071	13175072	+	asmbl_40393	none	STRG.3679.2	1	STRG.3679.1,STRG.3679.3,blat.proc3829873.chain_76,blat.proc3829873.chain_77,blat.proc3829873.chain_78,blat.proc3829873.chain_79	6
scaffold_23	starts_in_intron	2207909	2207909	-	asmbl_31432	none	blat.proc3829899.chain_2690	1	STRG.25677.4	1
scaffold_1	alt_donor	14352501	14352502	-	asmbl_899,asmbl_902	none	STRG.1030.1,blat.proc3829887.chain_925,blat.proc3829887.chain_927	3	STRG.1030.2,blat.proc3829887.chain_924	2
scaffold_8	spliced_intron	4851222	4851393	+	asmbl_51845	none	STRG.9942.1,STRG.9942.2,blat.proc3829875.chain_2454	3	blat.proc3829875.chain_2455,blat.proc3829875.chain_2456	2
scaffold_4	alt_acceptor	12606730	12606731	+	asmbl_43064	none	STRG.4899.2,blat.proc3829873.chain_1229	2	STRG.4899.1,blat.proc3829873.chain_1230	2
scaffold_8	ends_in_intron	6121105	6121105	+	asmbl_51931	none	Trinity_GG_5582_c0_g1_i6	1	STRG.10007.1,STRG.10007.2,STRG.10007.3,Trinity_GG_5582_c0_g1_i7,blat.proc3829875.chain_2524,blat.proc3829875.chain_2527	6
scaffold_19	ends_in_intron	6684935	6684935	+	asmbl_22234	none	blat.proc3829881.chain_3050	1	STRG.22182.1,Trinity_GG_12219_c0_g1_i3,blat.proc3829881.chain_3046	3
scaffold_12	alternate_exon	10618441	10618504	-	asmbl_7897	none	STRG.15030.2	1	STRG.15030.1,STRG.15030.3,blat.proc3829893.chain_3382	3
scaffold_643	skipped_exon	1472	1924	-	asmbl_49428	none	STRG.30389.1	1	STRG.30389.2	1
scaffold_13	spliced_intron	1238377	1238489	+	asmbl_10520	none	STRG.15478.7	1	blat.proc3829879.chain_209	1
scaffold_19	skipped_exon	12337312	12337821	+	asmbl_22596	none	blat.proc3829881.chain_3501	1	STRG.22552.1,STRG.22552.2,blat.proc3829881.chain_3499,blat.proc3829881.chain_3502	4
scaffold_13	ends_in_intron	1798528	1798528	-	asmbl_9392	none	blat.proc3829895.chain_247	1	STRG.15516.1	1
scaffold_6	retained_exon	19116136	19116266	-	asmbl_49233	none	STRG.8568.1,Trinity_GG_21904_c0_g1_i3,blat.proc3829891.chain_897	3	STRG.8568.3,STRG.8568.5,Trinity_GG_21904_c0_g1_i1,blat.proc3829891.chain_898	4
scaffold_13	retained_intron	663297	663385	-	asmbl_9331	none	Trinity_GG_25669_c0_g1_i6,blat.proc3829895.chain_180	2	STRG.15439.1,STRG.15439.2,Trinity_GG_25669_c0_g1_i2,Trinity_GG_25669_c0_g1_i3,Trinity_GG_25669_c0_g1_i4,Trinity_GG_25669_c0_g1_i5,blat.proc3829895.chain_176,blat.proc3829895.chain_177,blat.proc3829895.chain_178,blat.proc3829895.chain_179	10
scaffold_14	retained_exon	8695771	8695878	-	asmbl_13318,asmbl_13321	none	STRG.17289.1,blat.proc3829895.chain_2016,blat.proc3829895.chain_2019	3	STRG.17289.2,blat.proc3829895.chain_2017	2
scaffold_15	retained_intron	10768425	10768689	+	asmbl_14407,asmbl_14408	none	STRG.18552.6,blat.proc3829879.chain_3159	2	STRG.18552.3,STRG.18552.5,blat.proc3829879.chain_3157,blat.proc3829879.chain_3160,blat.proc3829879.chain_3161,blat.proc3829879.chain_3162	6
scaffold_10	alt_acceptor	3922144	3922145	+	asmbl_4371	none	blat.proc3829877.chain_903	1	blat.proc3829877.chain_902	1
scaffold_6	alt_acceptor	6026396	6026397	+	asmbl_46928	none	STRG.7547.2	1	STRG.7547.1,STRG.7547.3,blat.proc3829873.chain_3639	3
scaffold_15	skipped_exon	7792749	7793647	+	asmbl_14244	none	STRG.18344.1,blat.proc3829879.chain_2989	2	STRG.18344.2,blat.proc3829879.chain_2991,blat.proc3829879.chain_2992	3
scaffold_20	alt_acceptor	11503191	11503192	+	asmbl_26219	none	STRG.23641.1,Trinity_GG_13041_c0_g1_i2,blat.proc3829883.chain_686	3	STRG.23641.2	1
scaffold_14	starts_in_intron	8349344	8349344	-	asmbl_13274	none	STRG.17246.1,blat.proc3829895.chain_1863	2	STRG.17246.2	1
scaffold_22	ends_in_intron	509438	509438	-	asmbl_29857	none	Trinity_GG_30818_c0_g1_i20,blat.proc3829899.chain_1835	2	Trinity_GG_30818_c0_g1_i8,blat.proc3829899.chain_1825	2
scaffold_5	starts_in_intron	17002839	17002839	+	asmbl_44787	none	Trinity_GG_3750_c0_g1_i1,blat.proc3829873.chain_2977	2	STRG.6873.1,STRG.6873.2,blat.proc3829873.chain_2978,blat.proc3829873.chain_2979	4
scaffold_16	starts_in_intron	434672	434672	-	asmbl_16044,asmbl_16046,asmbl_16051	none	blat.proc3829897.chain_17,blat.proc3829897.chain_19,blat.proc3829897.chain_24	3	STRG.19039.1,blat.proc3829897.chain_18,blat.proc3829897.chain_20,blat.proc3829897.chain_21,blat.proc3829897.chain_23	5
scaffold_6	retained_intron	5021998	5022641	-	asmbl_48327	none	STRG.7469.1,Trinity_GG_21206_c0_g1_i2,Trinity_GG_21206_c0_g1_i5,blat.proc3829889.chain_3472,blat.proc3829889.chain_3473	5	STRG.7469.2	1
scaffold_13	spliced_intron	8237956	8238073	-	asmbl_9918,asmbl_9921	none	STRG.16101.1,blat.proc3829895.chain_898,blat.proc3829895.chain_901	3	blat.proc3829895.chain_899	1
scaffold_5	retained_exon	5608356	5608889	+	asmbl_44018	none	STRG.5977.2	1	STRG.5977.1,blat.proc3829873.chain_2066	2
scaffold_10	starts_in_intron	12049987	12049987	+	asmbl_4799	none	STRG.12829.2	1	STRG.12829.1,Trinity_GG_7040_c0_g1_i1,Trinity_GG_7040_c0_g1_i2,Trinity_GG_7067_c1_g1_i1,blat.proc3829877.chain_1340,blat.proc3829877.chain_1395	6
scaffold_19	starts_in_intron	10223282	10223282	+	asmbl_22433	none	STRG.22389.5,blat.proc3829881.chain_3316	2	STRG.22389.1,STRG.22389.2,STRG.22389.4,blat.proc3829881.chain_3315,blat.proc3829881.chain_3317	5
scaffold_5	starts_in_intron	18350020	18350020	+	asmbl_44907	none	Trinity_GG_3825_c0_g1_i1	1	STRG.6957.1,Trinity_GG_3825_c0_g1_i2	2
scaffold_27	spliced_intron	1026348	1026649	-	asmbl_36689,asmbl_36690,asmbl_36692	none	STRG.28589.1,STRG.28589.2,STRG.28589.3,blat.proc3829901.chain_1729	4	blat.proc3829901.chain_1730	1
scaffold_19	retained_exon	13192899	13192924	-	asmbl_21827,asmbl_21837,asmbl_21839,asmbl_21840,asmbl_21841,asmbl_21842,asmbl_21843,asmbl_21845	none	STRG.22682.1,Trinity_GG_29598_c1_g1_i12,blat.proc3829897.chain_3360,blat.proc3829897.chain_3361,blat.proc3829897.chain_3362,blat.proc3829897.chain_3363,blat.proc3829897.chain_3364,blat.proc3829897.chain_3368,blat.proc3829897.chain_3370,blat.proc3829897.chain_3371	10	STRG.22682.2	1
scaffold_14	alt_acceptor	12632050	12632051	-	asmbl_13564,asmbl_13565,asmbl_13567,asmbl_13568,asmbl_13569,asmbl_13570,asmbl_13572	none	STRG.17566.1,STRG.17566.3,blat.proc3829895.chain_2326,blat.proc3829895.chain_2327,blat.proc3829895.chain_2329,blat.proc3829895.chain_2330,blat.proc3829895.chain_2331,blat.proc3829895.chain_2332,blat.proc3829895.chain_2333	9	STRG.17566.4	1
scaffold_3	alt_donor	12943266	12943267	-	asmbl_39194,asmbl_39196	none	STRG.3670.2,Trinity_GG_19027_c0_g1_i2,blat.proc3829887.chain_3444	3	STRG.3670.1,STRG.3670.3,Trinity_GG_19027_c0_g1_i1,blat.proc3829887.chain_3443	4
scaffold_25	alt_donor	1439078	1439079	+	asmbl_33367,asmbl_33368,asmbl_33369,asmbl_33371	none	STRG.27161.1,STRG.27161.2,STRG.27161.4,blat.proc3829885.chain_227	4	STRG.27161.3,Trinity_GG_14981_c0_g1_i1,blat.proc3829885.chain_226,blat.proc3829885.chain_228	4
scaffold_4	skipped_exon	12571017	12571399	-	asmbl_41675	none	STRG.4898.2,blat.proc3829889.chain_966	2	STRG.4898.1,blat.proc3829889.chain_965	2
scaffold_1	alt_donor	11728188	11728189	+	asmbl_2121	none	STRG.786.2,Trinity_GG_491_c0_g1_i2,blat.proc3829871.chain_869	3	STRG.786.1,Trinity_GG_491_c0_g1_i1,blat.proc3829871.chain_870	3
scaffold_14	alt_acceptor	2122954	2122955	-	asmbl_12896,asmbl_12897,asmbl_12899	none	STRG.16822.1,Trinity_GG_26440_c0_g1_i4,Trinity_GG_26440_c0_g1_i5,Trinity_GG_26440_c0_g1_i7,blat.proc3829895.chain_1526,blat.proc3829895.chain_1528,blat.proc3829895.chain_1529	7	Trinity_GG_26440_c0_g1_i9,blat.proc3829895.chain_1527	2
scaffold_17	alternate_exon	1289779	1292490	-	asmbl_18729	none	blat.proc3829897.chain_836	1	STRG.19952.2,STRG.19952.6	2
scaffold_16	spliced_intron	1510085	1511404	+	asmbl_16871,asmbl_16873	none	STRG.19088.2,blat.proc3829879.chain_3697	2	STRG.19088.1,blat.proc3829879.chain_3698	2
scaffold_4	ends_in_intron	14115278	14115278	-	asmbl_41777	none	Trinity_GG_19765_c0_g2_i1,blat.proc3829889.chain_998	2	STRG.5030.1,STRG.5030.2,blat.proc3829889.chain_997	3
scaffold_9	alt_acceptor	3632086	3632087	-	asmbl_54881	none	STRG.10960.2	1	STRG.10960.1,blat.proc3829891.chain_3153	2
scaffold_18	alt_donor	7223660	7223661	+	asmbl_20753,asmbl_20756	none	STRG.21439.2,STRG.21439.3,blat.proc3829881.chain_2331	3	STRG.21439.1	1
scaffold_26	spliced_intron	6659499	6659582	+	asmbl_35623,asmbl_35624,asmbl_35625	none	STRG.28361.1,blat.proc3829885.chain_1287,blat.proc3829885.chain_1288,blat.proc3829885.chain_1289	4	blat.proc3829885.chain_1290	1
scaffold_15	alternate_exon	8440706	8440763	+	asmbl_14277	none	STRG.18388.2	1	STRG.18388.1,blat.proc3829879.chain_2966	2
scaffold_2	alt_donor	14193681	14193682	-	asmbl_23580,asmbl_23586	none	STRG.2417.1,blat.proc3829887.chain_2212	2	STRG.2417.2	1
scaffold_3	alternate_exon	18754751	18757761	+	asmbl_40704	none	STRG.4059.2	1	STRG.4059.3	1
scaffold_17	alternate_exon	10037505	10037857	-	asmbl_19274	none	STRG.20608.3	1	STRG.20608.1,STRG.20608.2,STRG.20608.6	3
scaffold_2	spliced_intron	4687374	4687408	-	asmbl_23115,asmbl_23116	none	STRG.1889.1,STRG.1889.3	2	STRG.1889.2	1
scaffold_21	starts_in_intron	457363	457363	-	asmbl_27353	none	blat.proc3829899.chain_766	1	STRG.23726.1,blat.proc3829899.chain_763,blat.proc3829899.chain_765	3
scaffold_9	spliced_intron	12305541	12305790	+	asmbl_54409	none	STRG.11549.1,blat.proc3829877.chain_330	2	STRG.11549.2,blat.proc3829877.chain_331	2
scaffold_27	spliced_intron	2049473	2049594	+	asmbl_36023,asmbl_36024	none	STRG.28673.1,blat.proc3829885.chain_1707,blat.proc3829885.chain_1708	3	blat.proc3829885.chain_1706	1
scaffold_17	alt_acceptor	4675123	4675124	-	asmbl_18921	none	STRG.20188.1,blat.proc3829897.chain_1146	2	blat.proc3829897.chain_1145	1
scaffold_6	alt_donor	2863162	2863163	+	asmbl_46722	none	STRG.7272.1	1	STRG.7272.2	1
scaffold_20	starts_in_intron	7858964	7858964	-	asmbl_26855	none	blat.proc3829899.chain_376	1	STRG.23322.1,STRG.23322.2,blat.proc3829899.chain_377,blat.proc3829899.chain_378	4
scaffold_21	alt_acceptor	5973973	5973974	+	asmbl_28617	none	blat.proc3829883.chain_1250	1	STRG.24125.1,blat.proc3829883.chain_1249	2
scaffold_1	starts_in_intron	20132399	20132399	+	asmbl_2595	none	Trinity_GG_783_c0_g1_i1,blat.proc3829871.chain_1380	2	STRG.1378.1,Trinity_GG_783_c0_g2_i1,blat.proc3829871.chain_1381	3
scaffold_4	retained_intron	15907621	15907662	-	asmbl_41876	none	STRG.5168.1,Trinity_GG_19859_c1_g1_i1,blat.proc3829889.chain_1162	3	STRG.5168.2	1
scaffold_28	retained_intron	9441283	9441479	-	asmbl_37842	none	blat.proc3829901.chain_3079	1	STRG.29952.1	1
scaffold_12	alternate_exon	10526969	10527046	-	asmbl_7888	none	STRG.15003.1,Trinity_GG_25382_c0_g1_i2,blat.proc3829893.chain_3392	3	STRG.15003.2,blat.proc3829893.chain_3393	2
scaffold_10	retained_intron	9074945	9075599	+	asmbl_4641,asmbl_4643	none	STRG.12648.1,blat.proc3829877.chain_1223,blat.proc3829877.chain_1224	3	STRG.12648.2	1
scaffold_24	alt_donor	10486672	10486673	+	asmbl_32571,asmbl_32572,asmbl_32573,asmbl_32577	none	STRG.27000.1,STRG.27000.2,STRG.27000.5,Trinity_GG_14920_c0_g1_i2,Trinity_GG_14920_c0_g1_i4,Trinity_GG_14920_c0_g1_i5,blat.proc3829885.chain_126,blat.proc3829885.chain_128,blat.proc3829885.chain_129	9	STRG.27000.4,Trinity_GG_14920_c0_g1_i6,blat.proc3829885.chain_127	3
scaffold_322	spliced_intron	608	748	+	asmbl_40918	none	STRG.30250.1	1	Trinity_GG_16755_c1_g1_i2	1
scaffold_13	retained_intron	4461177	4462126	-	asmbl_9594	none	STRG.15756.2,Trinity_GG_25865_c0_g1_i1,blat.proc3829895.chain_502,blat.proc3829895.chain_504	4	STRG.15756.1	1
scaffold_27	spliced_intron	3000478	3000572	+	asmbl_36110,asmbl_36111,asmbl_36117,asmbl_36119,asmbl_36121,asmbl_36122	none	STRG.28767.1,STRG.28767.4,STRG.28767.5,blat.proc3829885.chain_1838,blat.proc3829885.chain_1839,blat.proc3829885.chain_1841,blat.proc3829885.chain_1842,blat.proc3829885.chain_1847	8	STRG.28767.2,STRG.28767.3,Trinity_GG_15918_c0_g1_i4,blat.proc3829885.chain_1843,blat.proc3829885.chain_1846,blat.proc3829885.chain_1849	6
scaffold_20	alternate_exon	11479122	11480460	+	asmbl_26208,asmbl_26210,asmbl_26212	none	STRG.23639.2,STRG.23639.3,Trinity_GG_13053_c0_g1_i3,blat.proc3829883.chain_715,blat.proc3829883.chain_716	5	STRG.23639.5,Trinity_GG_13053_c0_g2_i1,blat.proc3829883.chain_718	3
scaffold_15	retained_exon	346455	346550	+	asmbl_13900	none	STRG.17869.1,blat.proc3829879.chain_2553	2	STRG.17869.2	1
scaffold_23	alternate_exon	7405980	7406045	+	asmbl_30991	none	STRG.26040.2	1	STRG.26040.1,STRG.26040.3	2
scaffold_11	alternate_exon	2449072	2449157	-	asmbl_6479	none	blat.proc3829893.chain_1862	1	STRG.13386.1,STRG.13386.2	2
scaffold_7	alt_acceptor	2519456	2519457	+	asmbl_50533	none	blat.proc3829875.chain_1109	1	blat.proc3829875.chain_1108	1
scaffold_18	spliced_intron	8726003	8726179	+	asmbl_20884,asmbl_20886,asmbl_20888	none	STRG.21533.2,STRG.21533.4,blat.proc3829881.chain_2484,blat.proc3829881.chain_2485	4	STRG.21533.3,STRG.21533.5,STRG.21533.6,Trinity_GG_11882_c0_g1_i2,blat.proc3829881.chain_2486,blat.proc3829881.chain_2487,blat.proc3829881.chain_2488	7
scaffold_10	retained_intron	11093689	11093875	+	asmbl_4724	none	STRG.12765.1,Trinity_GG_7028_c0_g1_i2,blat.proc3829877.chain_1307	3	STRG.12765.2,Trinity_GG_7028_c0_g1_i1,blat.proc3829877.chain_1306	3
scaffold_19	spliced_intron	678886	678974	+	asmbl_22003	none	blat.proc3829881.chain_2823	1	Trinity_GG_12091_c0_g1_i4,blat.proc3829881.chain_2825	2
scaffold_8	skipped_exon	15335576	15336244	+	asmbl_52392	none	STRG.10550.1,blat.proc3829875.chain_3039	2	STRG.10550.2,blat.proc3829875.chain_3040	2
scaffold_6	starts_in_intron	11500466	11500466	+	asmbl_47277	none	blat.proc3829875.chain_313	1	STRG.7940.1,Trinity_GG_4344_c0_g2_i1,Trinity_GG_4344_c0_g2_i3,blat.proc3829875.chain_310,blat.proc3829875.chain_312	5
scaffold_7	starts_in_intron	7652947	7652947	-	asmbl_49778	none	blat.proc3829891.chain_1281	1	STRG.9007.1,blat.proc3829891.chain_1282	2
scaffold_3	skipped_exon	7714229	7715272	-	asmbl_38928	none	STRG.3361.2,Trinity_GG_18844_c3_g1_i1	2	STRG.3361.1,blat.proc3829887.chain_3177	2
scaffold_27	retained_exon	145842	145925	-	asmbl_36596	none	Trinity_GG_32960_c0_g1_i2,blat.proc3829901.chain_1702	2	STRG.28528.2	1
scaffold_4	starts_in_intron	18760666	18760666	+	asmbl_43450	none	Trinity_GG_3000_c0_g1_i1	1	STRG.5460.2,Trinity_GG_3000_c0_g1_i2,blat.proc3829873.chain_1687	3
scaffold_13	starts_in_intron	2357226	2357226	+	asmbl_10563	none	STRG.15543.12,Trinity_GG_8511_c0_g1_i10,blat.proc3829879.chain_158	3	STRG.15543.3,STRG.15543.6,STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161,blat.proc3829879.chain_162	12
scaffold_13	ends_in_intron	14154044	14154044	+	asmbl_11410,asmbl_11411	none	Trinity_GG_9078_c0_g1_i2,blat.proc3829879.chain_1228,blat.proc3829879.chain_1231	3	STRG.16445.1,Trinity_GG_9078_c0_g1_i1,blat.proc3829879.chain_1230	3
scaffold_3	retained_exon	11608608	11608730	-	asmbl_39129	none	STRG.3592.1,blat.proc3829887.chain_3366	2	STRG.3592.2,blat.proc3829887.chain_3364,blat.proc3829887.chain_3365	3
scaffold_7	alternate_exon	18398457	18398536	+	asmbl_51412	none	STRG.9660.3,blat.proc3829875.chain_2120	2	STRG.9660.1,STRG.9660.2,blat.proc3829875.chain_2121,blat.proc3829875.chain_2122	4
scaffold_5	alt_acceptor	11991739	11991740	-	asmbl_45812	none	STRG.6447.1,blat.proc3829889.chain_2521	2	STRG.6447.4,blat.proc3829889.chain_2519	2
scaffold_2	alt_acceptor	6466078	6466079	+	asmbl_24494,asmbl_24495	none	STRG.2012.1,STRG.2012.2,blat.proc3829871.chain_2072,blat.proc3829871.chain_2074	4	blat.proc3829871.chain_2075	1
scaffold_8	retained_exon	9128802	9129248	-	asmbl_53004,asmbl_53007,asmbl_53008	none	STRG.10161.2,blat.proc3829891.chain_2335,blat.proc3829891.chain_2336	3	STRG.10161.3,STRG.10161.4	2
scaffold_18	ends_in_intron	6433857	6433857	-	asmbl_19938	none	STRG.21361.2	1	STRG.21361.1,blat.proc3829897.chain_2227	2
scaffold_12	alternate_exon	11365129	11365232	-	asmbl_7939	none	STRG.15064.2,Trinity_GG_25415_c0_g1_i1,blat.proc3829893.chain_3449	3	STRG.15064.1	1
scaffold_21	spliced_intron	2946480	2946674	-	asmbl_27519,asmbl_27520,asmbl_27522	none	STRG.23903.1,STRG.23903.2,STRG.23903.3,Trinity_GG_30331_c0_g1_i1,Trinity_GG_30331_c0_g1_i3,blat.proc3829899.chain_969,blat.proc3829899.chain_970	7	Trinity_GG_30331_c0_g1_i4,blat.proc3829899.chain_968	2
scaffold_5	retained_intron	6835252	6835402	-	asmbl_45537	none	STRG.6084.2	1	STRG.6084.1,blat.proc3829889.chain_2180	2
scaffold_2	skipped_exon	14738582	14741472	+	asmbl_25000	none	STRG.2472.1,blat.proc3829871.chain_2653	2	STRG.2472.2,blat.proc3829871.chain_2652,blat.proc3829871.chain_2654	3
scaffold_24	retained_intron	8737754	8737865	-	asmbl_33088	none	blat.proc3829901.chain_171	1	STRG.26873.1,STRG.26873.2,blat.proc3829901.chain_169,blat.proc3829901.chain_170,blat.proc3829901.chain_172	5
scaffold_19	retained_exon	12432267	12432319	+	asmbl_22608,asmbl_22609	none	blat.proc3829881.chain_3516,blat.proc3829881.chain_3518	2	STRG.22558.1,blat.proc3829881.chain_3515,blat.proc3829881.chain_3517,blat.proc3829881.chain_3519,blat.proc3829881.chain_3520	5
scaffold_8	spliced_intron	9870650	9870718	+	asmbl_52106	none	blat.proc3829875.chain_2693	1	blat.proc3829875.chain_2695	1
scaffold_14	skipped_exon	14386053	14387177	+	asmbl_12531	none	STRG.17683.1	1	STRG.17683.2	1
scaffold_20	alt_donor	11098905	11098906	+	asmbl_26168	none	blat.proc3829883.chain_758	1	STRG.23614.1,blat.proc3829883.chain_757	2
scaffold_1	spliced_intron	5220774	5220883	-	asmbl_251,asmbl_252	none	STRG.327.1,STRG.327.2,blat.proc3829887.chain_154,blat.proc3829887.chain_156	4	STRG.327.3	1
scaffold_13	retained_intron	4239686	4240251	-	asmbl_9574,asmbl_9575	none	STRG.15737.1,blat.proc3829895.chain_477,blat.proc3829895.chain_480	3	STRG.15737.2,STRG.15737.3,STRG.15737.4,blat.proc3829895.chain_479	4
scaffold_1	alternate_exon	11745316	11745630	+	asmbl_2125	none	Trinity_GG_493_c0_g1_i2,blat.proc3829871.chain_877	2	STRG.787.2,blat.proc3829871.chain_880	2
scaffold_11	alt_donor	6109928	6109929	-	asmbl_6672	none	blat.proc3829893.chain_2069	1	STRG.13661.2,blat.proc3829893.chain_2070	2
scaffold_10	starts_in_intron	7828102	7828102	-	asmbl_3479	none	Trinity_GG_24026_c0_g1_i1,blat.proc3829893.chain_1048	2	STRG.12564.1,blat.proc3829893.chain_1049	2
scaffold_9	alt_acceptor	16764346	16764347	-	asmbl_55594	none	STRG.11814.1,blat.proc3829893.chain_228	2	STRG.11814.2	1
scaffold_15	spliced_intron	1712462	1712546	+	asmbl_13973,asmbl_13974,asmbl_13979	none	STRG.17968.1,STRG.17968.2,STRG.17968.3,blat.proc3829879.chain_2610,blat.proc3829879.chain_2612	5	blat.proc3829879.chain_2609,blat.proc3829879.chain_2611,blat.proc3829879.chain_2614	3
scaffold_13	starts_in_intron	3445620	3445620	-	asmbl_9500	none	STRG.15640.2,blat.proc3829895.chain_328	2	STRG.15640.1,blat.proc3829895.chain_327	2
scaffold_13	alt_acceptor	774	775	+	asmbl_10413	none	STRG.15404.1,blat.proc3829879.chain_69	2	STRG.15404.2	1
scaffold_24	ends_in_intron	6448325	6448325	+	asmbl_32322	none	blat.proc3829883.chain_3600	1	STRG.26679.1,STRG.26679.2,blat.proc3829883.chain_3599,blat.proc3829883.chain_3602,blat.proc3829883.chain_3603	5
scaffold_21	starts_in_intron	702814	702814	-	asmbl_27373	none	STRG.23744.2,Trinity_GG_30201_c0_g1_i2,blat.proc3829899.chain_714	3	STRG.23744.1,Trinity_GG_30201_c0_g1_i1,Trinity_GG_30201_c0_g1_i3,blat.proc3829899.chain_715,blat.proc3829899.chain_716	5
scaffold_18	alternate_exon	5909316	5909397	+	asmbl_20649	none	STRG.21332.1,Trinity_GG_11755_c0_g1_i2,blat.proc3829881.chain_2259	3	STRG.21332.2,blat.proc3829881.chain_2260	2
scaffold_19	ends_in_intron	13236737	13236737	-	asmbl_21831,asmbl_21832	none	blat.proc3829897.chain_3354,blat.proc3829897.chain_3355	2	STRG.22682.1,STRG.22682.3,blat.proc3829897.chain_3356,blat.proc3829897.chain_3357	4
scaffold_28	retained_exon	1410626	1410745	+	asmbl_37999	none	STRG.29317.1,blat.proc3829885.chain_2366	2	STRG.29317.2	1
scaffold_26	alt_donor	3519144	3519145	+	asmbl_35314	none	STRG.28012.2,blat.proc3829885.chain_979	2	STRG.28012.1,blat.proc3829885.chain_980	2
scaffold_5	retained_intron	16650755	16650859	+	asmbl_44774	none	Trinity_GG_3703_c0_g1_i1,Trinity_GG_3703_c0_g1_i3,blat.proc3829873.chain_2907,blat.proc3829873.chain_2909	4	STRG.6846.1,STRG.6846.2,STRG.6846.3,Trinity_GG_3703_c0_g1_i2,blat.proc3829873.chain_2906,blat.proc3829873.chain_2908,blat.proc3829873.chain_2910	7
scaffold_19	skipped_exon	3557450	3558114	+	asmbl_22130	none	STRG.22033.2	1	STRG.22033.1,STRG.22033.3,STRG.22033.4	3
scaffold_24	retained_intron	10778708	10778819	-	asmbl_33213	none	blat.proc3829901.chain_295	1	STRG.27021.1,blat.proc3829901.chain_292,blat.proc3829901.chain_293,blat.proc3829901.chain_294,blat.proc3829901.chain_296	5
scaffold_21	alt_acceptor	3824094	3824095	-	asmbl_27573,asmbl_27578	none	STRG.23959.1,blat.proc3829899.chain_1042,blat.proc3829899.chain_1043	3	STRG.23959.2,STRG.23959.4,blat.proc3829899.chain_1041,blat.proc3829899.chain_1045	4
scaffold_27	alt_donor	628537	628538	-	asmbl_36653	none	STRG.28563.2,blat.proc3829901.chain_1749	2	STRG.28563.1,STRG.28563.3,STRG.28563.4,Trinity_GG_32986_c0_g1_i1,blat.proc3829901.chain_1752,blat.proc3829901.chain_1753,blat.proc3829901.chain_1754	7
scaffold_15	retained_exon	13560493	13560666	-	asmbl_15659	none	STRG.18782.3	1	STRG.18782.1,STRG.18782.2,blat.proc3829895.chain_3524,blat.proc3829895.chain_3525	4
scaffold_15	skipped_exon	13812383	13814430	-	asmbl_15691	none	STRG.18806.1,Trinity_GG_27567_c0_g1_i1,blat.proc3829895.chain_3548	3	STRG.18806.2	1
scaffold_22	alt_donor	11543991	11543992	+	asmbl_29697	none	STRG.25485.3	1	STRG.25485.1	1
scaffold_18	ends_in_intron	8375784	8375784	-	asmbl_20041	none	STRG.21500.4,blat.proc3829897.chain_2275	2	STRG.21500.2	1
scaffold_14	spliced_intron	399142	399238	+	asmbl_11721,asmbl_11723,asmbl_11726,asmbl_11731	none	STRG.16722.1,blat.proc3829879.chain_1464,blat.proc3829879.chain_1470,blat.proc3829879.chain_1473	4	STRG.16722.3	1
scaffold_4	alt_acceptor	15031801	15031802	+	asmbl_43260	none	blat.proc3829873.chain_1458	1	blat.proc3829873.chain_1457	1
scaffold_13	spliced_intron	2270956	2271084	-	asmbl_9400,asmbl_9401,asmbl_9402,asmbl_9403	none	STRG.15533.1,STRG.15533.2,STRG.15533.3,blat.proc3829895.chain_308,blat.proc3829895.chain_311	5	blat.proc3829895.chain_310,blat.proc3829895.chain_317	2
scaffold_9	alt_donor	15392594	15392595	+	asmbl_54544	none	STRG.11731.2,Trinity_GG_6522_c1_g1_i2,blat.proc3829877.chain_445	3	STRG.11731.1,Trinity_GG_6522_c1_g1_i1,blat.proc3829877.chain_446	3
scaffold_14	retained_exon	15585637	15585678	+	asmbl_12611	none	STRG.17785.3	1	STRG.17785.4	1
scaffold_15	starts_in_intron	4094948	4094948	+	asmbl_14064	none	Trinity_GG_9959_c0_g1_i1,blat.proc3829879.chain_2783	2	STRG.18140.1,STRG.18140.2,blat.proc3829879.chain_2785,blat.proc3829879.chain_2787	4
scaffold_7	alt_acceptor	8711881	8711882	-	asmbl_49842	none	STRG.9102.2,blat.proc3829891.chain_1361	2	STRG.9102.1	1
scaffold_24	alternate_exon	5841645	5841706	+	asmbl_32246	none	STRG.26627.2,blat.proc3829883.chain_3513	2	STRG.26627.1,blat.proc3829883.chain_3514	2
scaffold_10	starts_in_intron	9074189	9074189	+	asmbl_4641	none	blat.proc3829877.chain_1223,blat.proc3829877.chain_1224	2	STRG.12648.1,STRG.12648.2	2
scaffold_1	alt_acceptor	6254722	6254723	-	asmbl_335,asmbl_337	none	STRG.419.1,STRG.419.2,Trinity_GG_17236_c0_g1_i4	3	Trinity_GG_17236_c0_g1_i1,blat.proc3829887.chain_290	2
scaffold_18	spliced_intron	8862547	8864199	-	asmbl_20064	none	Trinity_GG_29045_c0_g1_i17,blat.proc3829897.chain_2361	2	Trinity_GG_29045_c0_g1_i9,blat.proc3829897.chain_2355	2
scaffold_7	starts_in_intron	12073391	12073391	-	asmbl_49997	none	blat.proc3829891.chain_1544	1	STRG.9303.1,blat.proc3829891.chain_1545	2
scaffold_5	alt_donor	10163587	10163588	+	asmbl_44330	none	STRG.6309.3,blat.proc3829873.chain_2449	2	STRG.6309.2,blat.proc3829873.chain_2448	2
scaffold_1	alternate_exon	3504917	3504981	-	asmbl_146,asmbl_152,asmbl_153,asmbl_154	none	STRG.217.1,blat.proc3829887.chain_114,blat.proc3829887.chain_119,blat.proc3829887.chain_121,blat.proc3829887.chain_123	5	STRG.217.2,STRG.217.3	2
scaffold_5	starts_in_intron	11633822	11633822	-	asmbl_45799	none	blat.proc3829889.chain_2524	1	blat.proc3829889.chain_2525	1
scaffold_20	alt_acceptor	10786020	10786021	+	asmbl_26146	none	STRG.23592.1,Trinity_GG_13065_c0_g1_i2,blat.proc3829883.chain_743	3	STRG.23592.2,blat.proc3829883.chain_740	2
scaffold_15	spliced_intron	5454516	5454744	-	asmbl_15217,asmbl_15218,asmbl_15222,asmbl_15223,asmbl_15224,asmbl_15225	none	STRG.18219.1,STRG.18219.2,STRG.18219.3,blat.proc3829895.chain_2952,blat.proc3829895.chain_2953,blat.proc3829895.chain_2955,blat.proc3829895.chain_2956	7	Trinity_GG_27252_c0_g1_i1,blat.proc3829895.chain_2958	2
scaffold_16	retained_intron	6194354	6194440	+	asmbl_17091	none	blat.proc3829881.chain_131	1	STRG.19373.1,STRG.19373.2,STRG.19373.3,STRG.19373.4,blat.proc3829881.chain_125,blat.proc3829881.chain_126,blat.proc3829881.chain_127,blat.proc3829881.chain_128	8
scaffold_8	retained_intron	11275623	11276066	+	asmbl_52201	none	Trinity_GG_5734_c0_g1_i4,blat.proc3829875.chain_2819	2	STRG.10338.1,STRG.10338.2,Trinity_GG_5734_c0_g1_i1,Trinity_GG_5734_c0_g1_i2,blat.proc3829875.chain_2816,blat.proc3829875.chain_2817,blat.proc3829875.chain_2818	7
scaffold_14	spliced_intron	9475827	9475918	+	asmbl_12266,asmbl_12267	none	STRG.17325.2,STRG.17325.3,Trinity_GG_9548_c0_g1_i1,blat.proc3829879.chain_2069	4	STRG.17325.1,Trinity_GG_9548_c0_g1_i2,blat.proc3829879.chain_2070	3
scaffold_19	spliced_intron	11468745	11468906	-	asmbl_21602	none	STRG.22466.1,blat.proc3829897.chain_3156	2	blat.proc3829897.chain_3155	1
scaffold_28	ends_in_intron	555927	555927	+	asmbl_37980	none	Trinity_GG_16210_c0_g1_i3,blat.proc3829885.chain_2364	2	STRG.29256.1,Trinity_GG_16210_c0_g1_i2,Trinity_GG_16210_c0_g1_i4,blat.proc3829885.chain_2363,blat.proc3829885.chain_2365	5
scaffold_15	spliced_intron	12003651	12003789	-	asmbl_15569,asmbl_15570	none	STRG.18635.1,STRG.18635.2,blat.proc3829895.chain_3339	3	STRG.18635.3,blat.proc3829895.chain_3340	2
scaffold_3	alternate_exon	12061699	12061818	+	asmbl_40346,asmbl_40347	none	STRG.3627.1,STRG.3627.2,Trinity_GG_2023_c0_g1_i1,blat.proc3829873.chain_3	4	STRG.3627.3	1
scaffold_14	ends_in_intron	9276708	9276708	-	asmbl_13350	none	STRG.17323.5,blat.proc3829895.chain_1993	2	STRG.17323.1,STRG.17323.2,blat.proc3829895.chain_1994,blat.proc3829895.chain_1995,blat.proc3829895.chain_1996,blat.proc3829895.chain_1998	6
scaffold_2	starts_in_intron	16287699	16287699	+	asmbl_25142,asmbl_25143	none	blat.proc3829871.chain_2750,blat.proc3829871.chain_2751	2	STRG.2560.1,STRG.2560.2,blat.proc3829871.chain_2749,blat.proc3829871.chain_2752	4
scaffold_1	alt_donor	9253208	9253209	+	asmbl_1960,asmbl_1961,asmbl_1962	none	STRG.616.1,STRG.616.3,STRG.616.4,Trinity_GG_391_c0_g1_i1,Trinity_GG_391_c0_g1_i2,Trinity_GG_391_c0_g1_i3,blat.proc3829871.chain_680,blat.proc3829871.chain_681,blat.proc3829871.chain_683	9	STRG.616.2	1
scaffold_4	alt_acceptor	12629616	12629617	-	asmbl_41681,asmbl_41684	none	STRG.4901.1,blat.proc3829889.chain_893,blat.proc3829889.chain_894	3	STRG.4901.3,blat.proc3829889.chain_896	2
scaffold_4	starts_in_intron	14954093	14954093	+	asmbl_43242	none	Trinity_GG_2857_c0_g1_i3,blat.proc3829873.chain_1432	2	STRG.5104.4	1
scaffold_28	alt_acceptor	296267	296268	+	asmbl_37961,asmbl_37962,asmbl_37963,asmbl_37965	none	STRG.29243.1,STRG.29243.3,blat.proc3829885.chain_2398,blat.proc3829885.chain_2399,blat.proc3829885.chain_2400,blat.proc3829885.chain_2401	6	STRG.29243.2	1
scaffold_13	alternate_exon	15510179	15510435	+	asmbl_11492	none	STRG.16580.2	1	STRG.16580.3	1
scaffold_15	alternate_exon	2563343	2563380	+	asmbl_14007	none	STRG.18036.2	1	STRG.18036.1,STRG.18036.3	2
scaffold_28	alt_acceptor	4704618	4704619	-	asmbl_37545	none	STRG.29617.2	1	STRG.29617.1,blat.proc3829901.chain_2743	2
scaffold_5	alternate_exon	15044294	15045791	-	asmbl_46014,asmbl_46017,asmbl_46022	none	STRG.6692.3,STRG.6692.6,Trinity_GG_20768_c0_g2_i1,blat.proc3829889.chain_2744	4	STRG.6692.8	1
scaffold_6	starts_in_intron	10836755	10836755	-	asmbl_48653	none	Trinity_GG_21488_c0_g1_i2,blat.proc3829891.chain_165	2	STRG.7892.1,Trinity_GG_21488_c0_g1_i1,blat.proc3829891.chain_166	3
scaffold_22	retained_intron	3011801	3011845	-	asmbl_29929	none	STRG.24773.1,blat.proc3829899.chain_1844	2	STRG.24773.2	1
scaffold_28	alt_donor	1705880	1705881	-	asmbl_37334	none	STRG.29347.2	1	STRG.29347.1,blat.proc3829901.chain_2393	2
scaffold_24	alt_acceptor	6801440	6801441	-	asmbl_32971,asmbl_32974	none	STRG.26711.2,blat.proc3829901.chain_15	2	STRG.26711.1,STRG.26711.3,Trinity_GG_31940_c0_g1_i1,blat.proc3829901.chain_14,blat.proc3829901.chain_16	5
scaffold_28	alt_donor	4202701	4202702	+	asmbl_38215,asmbl_38218,asmbl_38219	none	STRG.29593.1,STRG.29593.2,Trinity_GG_16421_c0_g1_i6,blat.proc3829885.chain_2728	4	STRG.29593.3	1
scaffold_14	alternate_exon	13583158	13583207	-	asmbl_13628	none	STRG.17623.2,blat.proc3829895.chain_2371	2	STRG.17623.1,blat.proc3829895.chain_2370	2
scaffold_15	alternate_exon	15347792	15348041	+	asmbl_14704	none	STRG.18908.1	1	STRG.18908.3	1
scaffold_14	skipped_exon	7294285	7295260	+	asmbl_12125	none	STRG.17153.2,blat.proc3829879.chain_1853	2	STRG.17153.1,blat.proc3829879.chain_1852,blat.proc3829879.chain_1855	3
scaffold_18	alt_acceptor	7553555	7553556	-	asmbl_19990	none	STRG.21448.1,blat.proc3829897.chain_2296	2	STRG.21448.2,STRG.21448.3	2
scaffold_13	starts_in_intron	11380113	11380113	-	asmbl_10044,asmbl_10047	none	STRG.16287.8,blat.proc3829895.chain_1032	2	STRG.16287.1,STRG.16287.2,STRG.16287.3,STRG.16287.4,STRG.16287.5,STRG.16287.7,Trinity_GG_26140_c0_g1_i1,Trinity_GG_26140_c0_g1_i3,Trinity_GG_26140_c0_g1_i4,Trinity_GG_26140_c0_g1_i5,Trinity_GG_26140_c0_g1_i8,blat.proc3829895.chain_1024,blat.proc3829895.chain_1026,blat.proc3829895.chain_1028,blat.proc3829895.chain_1033,blat.proc3829895.chain_1034	16
scaffold_13	alt_donor	4375749	4375750	+	asmbl_10767	none	STRG.15749.2	1	STRG.15749.1	1
scaffold_22	retained_intron	4223113	4223394	-	asmbl_29988	none	blat.proc3829899.chain_1975	1	STRG.24838.1,STRG.24838.2,STRG.24838.3,STRG.24838.4,blat.proc3829899.chain_1976,blat.proc3829899.chain_1977	6
scaffold_14	spliced_intron	11573661	11574063	-	asmbl_13480,asmbl_13486	none	STRG.17490.1,STRG.17490.3,blat.proc3829895.chain_2172,blat.proc3829895.chain_2179	4	STRG.17490.2,Trinity_GG_26806_c0_g1_i8	2
scaffold_6	retained_intron	17798851	17799282	-	asmbl_49136	none	blat.proc3829891.chain_713	1	STRG.8455.1,blat.proc3829891.chain_712	2
scaffold_5	alternate_exon	4754594	4755038	+	asmbl_43961	none	blat.proc3829873.chain_2070	1	Trinity_GG_3243_c0_g1_i3	1
scaffold_9	spliced_intron	61373	61963	-	asmbl_54768	none	STRG.10754.4,Trinity_GG_23008_c0_g2_i2,blat.proc3829891.chain_2965	3	STRG.10754.1,STRG.10754.2,Trinity_GG_23008_c0_g1_i1,blat.proc3829891.chain_2963	4
scaffold_16	retained_exon	6203811	6203991	-	asmbl_16325	none	STRG.19375.2	1	STRG.19375.1	1
scaffold_13	skipped_exon	15636177	15637930	+	asmbl_11502	none	STRG.16594.3	1	STRG.16594.2	1
scaffold_27	alternate_exon	627069	627300	-	asmbl_36657	none	Trinity_GG_32986_c0_g1_i1,blat.proc3829901.chain_1753	2	STRG.28563.3,blat.proc3829901.chain_1754	2
scaffold_3	skipped_exon	14495186	14495730	-	asmbl_39330,asmbl_39331	none	Trinity_GG_19109_c0_g1_i1,Trinity_GG_19109_c0_g1_i2,blat.proc3829887.chain_3589,blat.proc3829887.chain_3590	4	Trinity_GG_19109_c0_g2_i1,blat.proc3829887.chain_3591	2
scaffold_4	ends_in_intron	10448281	10448281	-	asmbl_41597	none	blat.proc3829889.chain_833	1	STRG.4795.1,STRG.4795.2,STRG.4795.3,blat.proc3829889.chain_832,blat.proc3829889.chain_835,blat.proc3829889.chain_838,blat.proc3829889.chain_839	7
scaffold_28	alternate_exon	4204037	4204400	+	asmbl_38219	none	STRG.29593.2	1	STRG.29593.1	1
scaffold_10	alt_donor	5156278	5156279	+	asmbl_4422	none	blat.proc3829877.chain_974	1	STRG.12329.1,blat.proc3829877.chain_975	2
scaffold_3	alt_donor	18937840	18937841	+	asmbl_40708	none	STRG.4063.1	1	STRG.4063.2,STRG.4063.3,STRG.4063.4	3
scaffold_6	ends_in_intron	13114315	13114315	+	asmbl_47411	none	Trinity_GG_4434_c0_g1_i2,blat.proc3829875.chain_484	2	STRG.8060.1,blat.proc3829875.chain_485	2
scaffold_19	retained_exon	10223580	10223646	+	asmbl_22431,asmbl_22432,asmbl_22435	none	STRG.22389.1,STRG.22389.2,STRG.22389.4,blat.proc3829881.chain_3315,blat.proc3829881.chain_3317	5	STRG.22389.3	1
scaffold_8	alternate_exon	10145562	10145617	+	asmbl_52137	none	STRG.10261.1,Trinity_GG_5649_c0_g1_i2,blat.proc3829875.chain_2667	3	blat.proc3829875.chain_2666	1
scaffold_2	starts_in_intron	6653697	6653697	+	asmbl_24516	none	Trinity_GG_1141_c0_g1_i1,blat.proc3829871.chain_2084	2	STRG.2024.1,STRG.2024.2,blat.proc3829871.chain_2083,blat.proc3829871.chain_2085	4
scaffold_10	spliced_intron	634820	635077	-	asmbl_2891,asmbl_2892,asmbl_2893,asmbl_2895	none	STRG.11933.1,STRG.11933.2,STRG.11933.4,Trinity_GG_23652_c0_g1_i1,blat.proc3829893.chain_377,blat.proc3829893.chain_378,blat.proc3829893.chain_381	7	STRG.11933.3,Trinity_GG_23652_c0_g1_i2,blat.proc3829893.chain_379	3
scaffold_6	alt_donor	15112439	15112440	+	asmbl_47594,asmbl_47595	none	STRG.8269.1,STRG.8269.3,blat.proc3829875.chain_672	3	STRG.8269.2	1
scaffold_11	retained_intron	1981821	1981961	-	asmbl_6436	none	STRG.13348.1,blat.proc3829893.chain_1790	2	STRG.13348.2,STRG.13348.3,blat.proc3829893.chain_1789	3
scaffold_17	retained_intron	2685101	2685190	+	asmbl_17811	none	Trinity_GG_10983_c0_g1_i1,blat.proc3829881.chain_880	2	STRG.20051.1,STRG.20051.2,blat.proc3829881.chain_881,blat.proc3829881.chain_882,blat.proc3829881.chain_883,blat.proc3829881.chain_884	6
scaffold_15	alt_acceptor	14324311	14324312	-	asmbl_15729	none	STRG.18855.3	1	Trinity_GG_27599_c0_g1_i7,blat.proc3829895.chain_3600	2
scaffold_7	alternate_exon	1231458	1233709	+	asmbl_50477	none	STRG.8627.7	1	blat.proc3829875.chain_1043	1
scaffold_322	alt_donor	6582	6583	-	asmbl_40916	none	STRG.30256.3	1	STRG.30256.1,STRG.30256.2,STRG.30256.4	3
scaffold_26	alt_acceptor	7588364	7588365	+	asmbl_35658	none	STRG.28381.1	1	STRG.28381.2	1
scaffold_20	ends_in_intron	6655851	6655851	-	asmbl_26765	none	Trinity_GG_29984_c1_g1_i2,blat.proc3829899.chain_282	2	STRG.23227.1,STRG.23227.2,blat.proc3829899.chain_281,blat.proc3829899.chain_284	4
scaffold_25	skipped_exon	5828532	5829193	-	asmbl_34266	none	STRG.27460.2,Trinity_GG_32411_c0_g1_i11,blat.proc3829901.chain_798	3	STRG.27460.1	1
scaffold_23	alt_donor	2587897	2587898	-	asmbl_31462	none	STRG.25705.5	1	STRG.25705.2,blat.proc3829899.chain_2749	2
scaffold_7	alt_donor	12386905	12386906	-	asmbl_50013,asmbl_50016,asmbl_50017,asmbl_50018,asmbl_50020	none	STRG.9328.1,blat.proc3829891.chain_1532,blat.proc3829891.chain_1533,blat.proc3829891.chain_1534,blat.proc3829891.chain_1535,blat.proc3829891.chain_1538	6	blat.proc3829891.chain_1531	1
scaffold_1	alt_donor	12335042	12335043	-	asmbl_716,asmbl_717	none	blat.proc3829887.chain_735,blat.proc3829887.chain_736	2	blat.proc3829887.chain_739	1
scaffold_7	ends_in_intron	12390374	12390374	-	asmbl_50014	none	Trinity_GG_22253_c2_g1_i1,blat.proc3829891.chain_1542	2	STRG.9328.1,blat.proc3829891.chain_1531,blat.proc3829891.chain_1533,blat.proc3829891.chain_1534,blat.proc3829891.chain_1535,blat.proc3829891.chain_1536,blat.proc3829891.chain_1537,blat.proc3829891.chain_1538	8
scaffold_13	spliced_intron	14716696	14716771	+	asmbl_11452	none	STRG.16511.1	1	blat.proc3829879.chain_1270	1
scaffold_8	alt_acceptor	9870717	9870718	+	asmbl_52106	none	blat.proc3829875.chain_2693	1	STRG.10225.2,STRG.10225.4,STRG.10225.5,STRG.10225.6,blat.proc3829875.chain_2691,blat.proc3829875.chain_2692,blat.proc3829875.chain_2694,blat.proc3829875.chain_2696,blat.proc3829875.chain_2697	9
scaffold_723	alt_acceptor	2509	2510	-	asmbl_51575	none	blat.proc3829901.chain_3464	1	STRG.30418.1,blat.proc3829901.chain_3463	2
scaffold_16	retained_exon	325178	325305	-	asmbl_16025,asmbl_16027,asmbl_16028,asmbl_16029	none	STRG.19019.1,STRG.19019.2,blat.proc3829897.chain_59,blat.proc3829897.chain_60,blat.proc3829897.chain_62	5	STRG.19019.3	1
scaffold_18	alt_donor	2050939	2050940	-	asmbl_19730	none	STRG.21084.2	1	STRG.21084.1,STRG.21084.3,Trinity_GG_28833_c0_g1_i1,blat.proc3829897.chain_1993	4
scaffold_23	spliced_intron	2164418	2164645	-	asmbl_31417	none	STRG.25669.6	1	STRG.25669.2	1
scaffold_4	alt_acceptor	16912466	16912467	+	asmbl_43349	none	STRG.5280.5	1	STRG.5280.1,STRG.5280.2,STRG.5280.4	3
scaffold_21	alt_donor	1054169	1054170	-	asmbl_27402,asmbl_27405	none	STRG.23776.2,Trinity_GG_30261_c0_g1_i4,blat.proc3829899.chain_852	3	STRG.23776.1,Trinity_GG_30261_c0_g1_i11,blat.proc3829899.chain_850	3
scaffold_1	alt_donor	5727343	5727344	-	asmbl_291	none	STRG.377.1,blat.proc3829887.chain_266,blat.proc3829887.chain_269	3	STRG.377.2	1
scaffold_3	starts_in_intron	11764292	11764292	-	asmbl_39139	none	blat.proc3829887.chain_3375	1	STRG.3605.1,blat.proc3829887.chain_3374	2
scaffold_18	alternate_exon	13463805	13463896	+	asmbl_21041,asmbl_21042	none	blat.proc3829881.chain_2679,blat.proc3829881.chain_2681	2	Trinity_GG_12008_c0_g1_i1,blat.proc3829881.chain_2680	2
scaffold_14	alternate_exon	14106449	14106847	-	asmbl_13660	none	STRG.17663.3	1	STRG.17663.1	1
scaffold_3	starts_in_intron	3244024	3244024	+	asmbl_39902	none	Trinity_GG_1771_c0_g1_i2,blat.proc3829871.chain_3304	2	STRG.3087.1,STRG.3087.3,blat.proc3829871.chain_3299,blat.proc3829871.chain_3307	4
scaffold_8	spliced_intron	11848560	11849714	+	asmbl_52276,asmbl_52278,asmbl_52279	none	blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970	3	STRG.10382.2,Trinity_GG_5824_c2_g1_i1,blat.proc3829875.chain_2983	3
scaffold_1	alt_acceptor	5619380	5619381	+	asmbl_1726,asmbl_1728	none	STRG.352.2,STRG.352.3	2	STRG.352.1	1
scaffold_18	retained_intron	13805940	13806190	+	asmbl_21059,asmbl_21060	none	blat.proc3829881.chain_2756,blat.proc3829881.chain_2758	2	STRG.21804.1,STRG.21804.2,Trinity_GG_12056_c0_g1_i2,Trinity_GG_12056_c0_g1_i3,blat.proc3829881.chain_2755,blat.proc3829881.chain_2757	6
scaffold_27	alt_donor	6076817	6076818	+	asmbl_36330	none	STRG.28989.1,Trinity_GG_16049_c1_g1_i2,blat.proc3829885.chain_2127	3	STRG.28989.2,blat.proc3829885.chain_2129	2
scaffold_1	alt_donor	11173731	11173732	+	asmbl_2074,asmbl_2075	none	STRG.743.2,blat.proc3829871.chain_814	2	STRG.743.4	1
scaffold_11	retained_intron	1286686	1286928	-	asmbl_6395	none	blat.proc3829893.chain_1751	1	STRG.13311.1,blat.proc3829893.chain_1749	2
scaffold_5	alternate_exon	6658338	6658603	+	asmbl_44105	none	STRG.6065.2	1	STRG.6065.1,Trinity_GG_3292_c0_g1_i2,blat.proc3829873.chain_2176	3
scaffold_10	alternate_exon	11105577	11105904	+	asmbl_4726,asmbl_4727	none	STRG.12772.1,blat.proc3829877.chain_1337,blat.proc3829877.chain_1339	3	STRG.12772.2	1
scaffold_11	spliced_intron	15687955	15688379	-	asmbl_7189	none	STRG.14295.1,blat.proc3829893.chain_2714	2	Trinity_GG_25002_c0_g1_i1,Trinity_GG_25002_c0_g1_i3,blat.proc3829893.chain_2712,blat.proc3829893.chain_2713	4
scaffold_5	retained_exon	17225624	17225757	+	asmbl_44810	none	STRG.6887.2,blat.proc3829873.chain_3030	2	STRG.6887.1,blat.proc3829873.chain_3033	2
scaffold_11	alt_donor	9829790	9829791	+	asmbl_5871	none	STRG.13996.4,blat.proc3829877.chain_2506	2	STRG.13996.2,blat.proc3829877.chain_2508,blat.proc3829877.chain_2512	3
scaffold_25	alt_acceptor	6297869	6297870	-	asmbl_34316	none	Trinity_GG_32428_c0_g1_i4,blat.proc3829901.chain_822	2	STRG.27515.1,blat.proc3829901.chain_819,blat.proc3829901.chain_820	3
scaffold_19	starts_in_intron	13012134	13012134	-	asmbl_21797,asmbl_21799,asmbl_21800	none	STRG.22610.2,STRG.22610.4,blat.proc3829897.chain_3402	3	STRG.22610.1,STRG.22610.3,blat.proc3829897.chain_3404	3
scaffold_9	alternate_exon	13852585	13858478	-	asmbl_55408	none	STRG.11644.3,blat.proc3829893.chain_31,blat.proc3829893.chain_35	3	blat.proc3829893.chain_36	1
scaffold_6	alt_acceptor	18218551	18218552	-	asmbl_49168	none	STRG.8487.2	1	STRG.8487.1	1
scaffold_8	retained_intron	17454124	17454424	+	asmbl_52469	none	blat.proc3829875.chain_3087	1	STRG.10660.2,Trinity_GG_5884_c0_g1_i5,blat.proc3829875.chain_3085	3
scaffold_16	alt_acceptor	1110365	1110366	-	asmbl_16098	none	STRG.19063.1	1	STRG.19063.2	1
scaffold_11	alternate_exon	3551581	3552817	+	asmbl_5412	none	blat.proc3829877.chain_1947	1	blat.proc3829877.chain_1948	1
scaffold_5	alternate_exon	4680143	4688616	-	asmbl_45373,asmbl_45377,asmbl_45381,asmbl_45382	none	STRG.5919.6,blat.proc3829889.chain_2028,blat.proc3829889.chain_2032,blat.proc3829889.chain_2033,blat.proc3829889.chain_2035	5	blat.proc3829889.chain_2034	1
scaffold_17	spliced_intron	8951543	8951643	+	asmbl_18175	none	STRG.20504.1,blat.proc3829881.chain_1274	2	STRG.20504.2,blat.proc3829881.chain_1273	2
scaffold_1	spliced_intron	11769504	11769614	+	asmbl_2129,asmbl_2131,asmbl_2132	none	STRG.795.1,STRG.795.2,STRG.795.3,blat.proc3829871.chain_893	4	blat.proc3829871.chain_892	1
scaffold_14	starts_in_intron	5587403	5587403	-	asmbl_13065	none	Trinity_GG_26552_c0_g1_i1,blat.proc3829895.chain_1707	2	STRG.17022.1,Trinity_GG_26552_c0_g1_i2,blat.proc3829895.chain_1706	3
scaffold_14	retained_intron	2376089	2376796	-	asmbl_12914,asmbl_12916,asmbl_12917,asmbl_12919,asmbl_12921,asmbl_12923,asmbl_12924	none	STRG.16839.1,STRG.16839.6,Trinity_GG_26463_c0_g1_i6,blat.proc3829895.chain_1579,blat.proc3829895.chain_1580,blat.proc3829895.chain_1581,blat.proc3829895.chain_1585,blat.proc3829895.chain_1587	8	STRG.16839.2,STRG.16839.3,STRG.16839.4,STRG.16839.5,blat.proc3829895.chain_1588	5
scaffold_2	alt_acceptor	20423868	20423869	+	asmbl_25361	none	STRG.2880.1,blat.proc3829871.chain_3037	2	STRG.2880.2	1
scaffold_20	alternate_exon	11481215	11482674	+	asmbl_26209	none	STRG.23639.1,Trinity_GG_13053_c0_g1_i2,blat.proc3829883.chain_714	3	STRG.23639.3,blat.proc3829883.chain_715	2
scaffold_2	alt_acceptor	13995192	13995193	+	asmbl_24895,asmbl_24896	none	STRG.2394.1,STRG.2394.2	2	STRG.2394.3	1
scaffold_510	retained_intron	3172	3441	-	asmbl_46464	none	blat.proc3829901.chain_3390,blat.proc3829901.chain_3391	2	STRG.30341.1	1
scaffold_17	alt_donor	9689009	9689010	+	asmbl_18249	none	STRG.20576.3,Trinity_GG_11262_c0_g1_i3,blat.proc3829881.chain_1372	3	STRG.20576.1,STRG.20576.2,Trinity_GG_11262_c0_g1_i1,Trinity_GG_11262_c0_g1_i2,blat.proc3829881.chain_1370,blat.proc3829881.chain_1371	6
scaffold_3	skipped_exon	6187507	6190087	-	asmbl_38863	none	STRG.3262.1,blat.proc3829887.chain_3015	2	STRG.3262.3,blat.proc3829887.chain_3012,blat.proc3829887.chain_3014	3
scaffold_17	alt_donor	7467244	7467245	+	asmbl_18037	none	STRG.20384.1,blat.proc3829881.chain_1150	2	STRG.20384.2	1
scaffold_9	ends_in_intron	11598251	11598251	-	asmbl_55263	none	Trinity_GG_23311_c0_g1_i2,blat.proc3829891.chain_3542	2	STRG.11464.1,blat.proc3829891.chain_3541	2
scaffold_19	alt_acceptor	12086648	12086649	-	asmbl_21663	none	blat.proc3829897.chain_3107	1	STRG.22515.1,blat.proc3829897.chain_3106	2
scaffold_13	skipped_exon	11379478	11382289	-	asmbl_10042,asmbl_10050	none	STRG.16287.5,Trinity_GG_26140_c0_g1_i3,blat.proc3829895.chain_1033	3	STRG.16287.1,STRG.16287.2,STRG.16287.7,Trinity_GG_26140_c0_g1_i4,Trinity_GG_26140_c0_g1_i5,blat.proc3829895.chain_1024,blat.proc3829895.chain_1026,blat.proc3829895.chain_1034	8
scaffold_21	alternate_exon	251715	254300	-	asmbl_27313,asmbl_27320,asmbl_27325	none	STRG.23718.1,STRG.23718.2,blat.proc3829899.chain_793	3	STRG.23718.3,STRG.23718.4,STRG.23718.5,STRG.23718.6,STRG.23718.8,blat.proc3829899.chain_781,blat.proc3829899.chain_782,blat.proc3829899.chain_786,blat.proc3829899.chain_788,blat.proc3829899.chain_792	10
scaffold_25	alternate_exon	9429027	9429092	+	asmbl_33802	none	STRG.27738.1,Trinity_GG_15317_c0_g1_i2,blat.proc3829885.chain_781	3	STRG.27738.3	1
scaffold_13	alternate_exon	2992568	2992632	+	asmbl_10631,asmbl_10633	none	STRG.15589.1,STRG.15589.2,blat.proc3829879.chain_309	3	STRG.15589.3	1
scaffold_26	starts_in_intron	4463000	4463000	+	asmbl_35437	none	Trinity_GG_15518_c0_g1_i1,blat.proc3829885.chain_1090	2	STRG.28134.1,blat.proc3829885.chain_1088,blat.proc3829885.chain_1089	3
scaffold_5	alt_donor	10170936	10170937	+	asmbl_44331	none	STRG.6310.1,blat.proc3829873.chain_2380	2	blat.proc3829873.chain_2378	1
scaffold_9	alt_donor	6274070	6274071	+	asmbl_54067	none	blat.proc3829875.chain_3629	1	STRG.11154.1,blat.proc3829875.chain_3628	2
scaffold_3	retained_intron	6046201	6046335	-	asmbl_38833,asmbl_38834,asmbl_38836	none	STRG.3255.1,STRG.3255.2,STRG.3255.5	3	STRG.3255.7	1
scaffold_14	alt_acceptor	2758018	2758019	-	asmbl_12954	none	STRG.16861.1,Trinity_GG_26451_c0_g1_i2,blat.proc3829895.chain_1553	3	STRG.16861.2	1
scaffold_6	alt_acceptor	10974670	10974671	+	asmbl_47252	none	Trinity_GG_4301_c0_g1_i3,blat.proc3829875.chain_221	2	STRG.7908.1,Trinity_GG_4301_c0_g1_i2,blat.proc3829875.chain_220	3
scaffold_15	starts_in_intron	4963610	4963610	+	asmbl_14120,asmbl_14124	none	STRG.18193.4,Trinity_GG_9948_c0_g1_i1,blat.proc3829879.chain_2764	3	STRG.18193.1,STRG.18193.3,Trinity_GG_9948_c0_g1_i3,blat.proc3829879.chain_2759,blat.proc3829879.chain_2760,blat.proc3829879.chain_2761,blat.proc3829879.chain_2762	7
scaffold_19	alt_acceptor	11902323	11902324	-	asmbl_21651	none	STRG.22500.1	1	STRG.22500.2,blat.proc3829897.chain_3180	2
scaffold_12	alternate_exon	16316171	16316314	-	asmbl_8256,asmbl_8260	none	STRG.15369.2,blat.proc3829895.chain_114	2	blat.proc3829895.chain_113	1
scaffold_5	alt_donor	4773598	4773599	-	asmbl_45399	none	STRG.5933.3	1	STRG.5933.1,STRG.5933.4	2
scaffold_11	alternate_exon	3544403	3553921	+	asmbl_5410	none	STRG.13470.1,blat.proc3829877.chain_1944,blat.proc3829877.chain_1949	3	STRG.13470.2,Trinity_GG_7395_c0_g1_i2,blat.proc3829877.chain_1943	3
scaffold_13	alternate_exon	13570397	13570434	+	asmbl_11379	none	blat.proc3829879.chain_1120	1	STRG.16402.1	1
scaffold_16	spliced_intron	7910628	7911984	+	asmbl_17158	none	STRG.19432.1,Trinity_GG_10619_c0_g1_i2,blat.proc3829881.chain_261	3	blat.proc3829881.chain_260	1
scaffold_13	starts_in_intron	6048100	6048100	-	asmbl_9722	none	STRG.15900.3,blat.proc3829895.chain_633	2	STRG.15900.4,blat.proc3829895.chain_629	2
scaffold_6	spliced_intron	14197562	14197732	+	asmbl_47528	none	STRG.8178.3,blat.proc3829875.chain_528	2	Trinity_GG_4445_c0_g1_i3,blat.proc3829875.chain_526	2
scaffold_24	starts_in_intron	9937565	9937565	-	asmbl_33142	none	blat.proc3829901.chain_252	1	STRG.26950.2,blat.proc3829901.chain_255	2
scaffold_17	alt_donor	1292411	1292412	-	asmbl_18725	none	STRG.19952.1,blat.proc3829897.chain_840	2	STRG.19952.3,STRG.19952.4,blat.proc3829897.chain_836,blat.proc3829897.chain_838,blat.proc3829897.chain_843	5
scaffold_2	alt_acceptor	15333722	15333723	+	asmbl_25056	none	STRG.2483.1,Trinity_GG_1406_c0_g1_i3	2	STRG.2483.2,STRG.2483.3,Trinity_GG_1406_c0_g1_i1,Trinity_GG_1406_c0_g1_i2,Trinity_GG_1406_c0_g1_i6	5
scaffold_3	alt_acceptor	5253763	5253764	+	asmbl_40026	none	STRG.3210.1,Trinity_GG_1818_c1_g1_i1,blat.proc3829871.chain_3406	3	STRG.3210.2	1
scaffold_3	retained_intron	6240997	6241570	-	asmbl_38883,asmbl_38885,asmbl_38886,asmbl_38887	none	STRG.3263.1,blat.proc3829887.chain_3031,blat.proc3829887.chain_3034,blat.proc3829887.chain_3035,blat.proc3829887.chain_3036	5	STRG.3263.2,STRG.3263.4,STRG.3263.5,STRG.3263.6,STRG.3263.7,blat.proc3829887.chain_3032	6
scaffold_5	alternate_exon	18560469	18560555	+	asmbl_44920,asmbl_44922	none	STRG.6978.1,STRG.6978.3,blat.proc3829873.chain_3147,blat.proc3829873.chain_3150	4	STRG.6978.4,Trinity_GG_3847_c0_g1_i2,Trinity_GG_3847_c0_g1_i8,blat.proc3829873.chain_3146,blat.proc3829873.chain_3148	5
scaffold_16	alt_acceptor	303934	303935	-	asmbl_16018	none	STRG.19009.2	1	STRG.19009.1	1
scaffold_1	spliced_intron	6972741	6972914	+	asmbl_1861,asmbl_1862,asmbl_1864	none	STRG.488.1,blat.proc3829871.chain_550,blat.proc3829871.chain_552,blat.proc3829871.chain_553	4	blat.proc3829871.chain_551	1
scaffold_14	alt_donor	208046	208047	-	asmbl_12777	none	STRG.16702.4,blat.proc3829895.chain_1408	2	STRG.16702.1,STRG.16702.3,blat.proc3829895.chain_1409	3
scaffold_5	starts_in_intron	5608178	5608178	+	asmbl_44017	none	STRG.5977.3	1	STRG.5977.1,STRG.5977.2,blat.proc3829873.chain_2066	3
scaffold_4	spliced_intron	15907621	15907662	-	asmbl_41877	none	STRG.5168.2	1	STRG.5168.1,Trinity_GG_19859_c1_g1_i1,blat.proc3829889.chain_1162	3
scaffold_21	ends_in_intron	7383726	7383726	+	asmbl_28745	none	blat.proc3829883.chain_1368	1	STRG.24245.1,blat.proc3829883.chain_1367	2
scaffold_15	retained_intron	15414145	15414264	+	asmbl_14728,asmbl_14729,asmbl_14731,asmbl_14734	none	STRG.18922.1,STRG.18922.2,STRG.18922.4,blat.proc3829879.chain_3552,blat.proc3829879.chain_3556	5	Trinity_GG_10387_c0_g1_i3,blat.proc3829879.chain_3554	2
scaffold_14	retained_intron	2373729	2374187	-	asmbl_12921,asmbl_12922	none	STRG.16839.5,STRG.16839.6	2	STRG.16839.1,STRG.16839.2,STRG.16839.3,STRG.16839.4,blat.proc3829895.chain_1581,blat.proc3829895.chain_1587	6
scaffold_3	spliced_intron	13423924	13424513	-	asmbl_39215	none	STRG.3690.2	1	STRG.3690.1	1
scaffold_25	starts_in_intron	4876323	4876323	+	asmbl_33541	none	Trinity_GG_15110_c0_g1_i1,blat.proc3829885.chain_433	2	STRG.27405.1,STRG.27405.2,Trinity_GG_15110_c0_g1_i2,blat.proc3829885.chain_434	4
scaffold_14	retained_intron	13223477	13223628	+	asmbl_12447,asmbl_12449,asmbl_12452	none	STRG.17600.2,STRG.17600.6,blat.proc3829879.chain_2201,blat.proc3829879.chain_2202	4	STRG.17600.1,STRG.17600.3,STRG.17600.4,STRG.17600.5,blat.proc3829879.chain_2203,blat.proc3829879.chain_2205	6
scaffold_22	retained_intron	6128912	6129087	+	asmbl_29388	none	STRG.24955.6	1	STRG.24955.3,STRG.24955.4,STRG.24955.7	3
scaffold_20	starts_in_intron	3713065	3713065	+	asmbl_25690	none	Trinity_GG_12704_c0_g1_i3,blat.proc3829883.chain_154	2	STRG.23058.1,STRG.23058.2,blat.proc3829883.chain_153,blat.proc3829883.chain_155	4
scaffold_500	retained_intron	2254	2461	+	asmbl_46443,asmbl_46444,asmbl_46445,asmbl_46447,asmbl_46448,asmbl_46449	none	STRG.30347.1,STRG.30347.2,STRG.30347.3,Trinity_GG_16793_c0_g1_i10,blat.proc3829885.chain_3358,blat.proc3829885.chain_3361,blat.proc3829885.chain_3362,blat.proc3829885.chain_3363	8	STRG.30347.4,blat.proc3829885.chain_3357	2
scaffold_19	retained_exon	13157726	13157873	+	asmbl_22666	none	STRG.22627.2,Trinity_GG_12509_c0_g1_i1,blat.proc3829881.chain_3575	3	STRG.22627.1	1
scaffold_17	spliced_intron	8951374	8951464	+	asmbl_18175	none	STRG.20504.1,blat.proc3829881.chain_1274	2	STRG.20504.2,blat.proc3829881.chain_1273	2
scaffold_5	starts_in_intron	17225169	17225169	+	asmbl_44809,asmbl_44813	none	blat.proc3829873.chain_3028,blat.proc3829873.chain_3034	2	STRG.6887.2,blat.proc3829873.chain_3030	2
scaffold_1	starts_in_intron	3254981	3254981	+	asmbl_1580	none	STRG.201.3	1	STRG.201.1,STRG.201.2,Trinity_GG_125_c0_g1_i1,Trinity_GG_125_c0_g1_i2,Trinity_GG_125_c0_g1_i4,Trinity_GG_125_c0_g1_i5,blat.proc3829871.chain_209,blat.proc3829871.chain_211,blat.proc3829871.chain_212,blat.proc3829871.chain_213	10
scaffold_3	retained_intron	17456078	17456973	+	asmbl_40642,asmbl_40643,asmbl_40644	none	STRG.3976.2,Trinity_GG_2205_c0_g1_i4,blat.proc3829873.chain_331,blat.proc3829873.chain_334	4	STRG.3976.1,STRG.3976.3,Trinity_GG_2205_c0_g1_i1,Trinity_GG_2205_c0_g1_i3,blat.proc3829873.chain_332,blat.proc3829873.chain_333	6
scaffold_3	retained_intron	15741539	15741648	-	asmbl_39388,asmbl_39390	none	blat.proc3829887.chain_3578,blat.proc3829887.chain_3579	2	STRG.3850.1,blat.proc3829887.chain_3580,blat.proc3829887.chain_3581	3
scaffold_13	retained_intron	16460036	16460320	-	asmbl_10277	none	STRG.16689.2,blat.proc3829895.chain_1356	2	STRG.16689.4,Trinity_GG_26334_c0_g1_i3,Trinity_GG_26334_c0_g1_i4,blat.proc3829895.chain_1353,blat.proc3829895.chain_1354	5
scaffold_13	starts_in_intron	8357043	8357043	+	asmbl_11111	none	blat.proc3829879.chain_893	1	STRG.16112.1,STRG.16112.2,STRG.16112.3,STRG.16112.4,Trinity_GG_8876_c0_g1_i5,blat.proc3829879.chain_889,blat.proc3829879.chain_891,blat.proc3829879.chain_892	8
scaffold_28	starts_in_intron	4267607	4267607	+	asmbl_38228	none	STRG.29594.2,blat.proc3829885.chain_2712	2	STRG.29594.1,Trinity_GG_16413_c0_g1_i1,blat.proc3829885.chain_2713	3
scaffold_24	alt_acceptor	3656071	3656072	+	asmbl_32165,asmbl_32168	none	STRG.26528.1,blat.proc3829883.chain_3404,blat.proc3829883.chain_3408	3	STRG.26528.2,STRG.26528.3,STRG.26528.4,STRG.26528.6,Trinity_GG_14654_c0_g1_i10,Trinity_GG_14654_c0_g1_i3,Trinity_GG_14654_c0_g1_i7,blat.proc3829883.chain_3402,blat.proc3829883.chain_3403,blat.proc3829883.chain_3405,blat.proc3829883.chain_3406,blat.proc3829883.chain_3407	12
scaffold_17	retained_intron	7047119	7047494	+	asmbl_18021	none	Trinity_GG_11134_c0_g1_i1	1	blat.proc3829881.chain_1119	1
scaffold_20	spliced_intron	9826506	9826707	-	asmbl_26982,asmbl_26983,asmbl_26985	none	STRG.23515.1,STRG.23515.2,blat.proc3829899.chain_528,blat.proc3829899.chain_529,blat.proc3829899.chain_530	5	blat.proc3829899.chain_527	1
scaffold_5	ends_in_intron	18704130	18704130	-	asmbl_46238	none	Trinity_GG_20900_c1_g1_i1,blat.proc3829889.chain_2965	2	STRG.6989.2	1
scaffold_1	spliced_intron	12683507	12683637	+	asmbl_2230,asmbl_2231	none	STRG.890.1,blat.proc3829871.chain_955,blat.proc3829871.chain_956,blat.proc3829871.chain_957	4	blat.proc3829871.chain_958	1
scaffold_17	retained_intron	3998584	3998705	+	asmbl_17880,asmbl_17881,asmbl_17883,asmbl_17885,asmbl_17886	none	STRG.20145.1,STRG.20145.3,STRG.20145.4,blat.proc3829881.chain_988,blat.proc3829881.chain_991,blat.proc3829881.chain_992	6	STRG.20145.2,blat.proc3829881.chain_989	2
scaffold_5	retained_intron	4696426	4696467	+	asmbl_43951	none	STRG.5917.1	1	STRG.5917.2	1
scaffold_4	alt_donor	3955897	3955898	-	asmbl_41213	none	STRG.4301.2,blat.proc3829889.chain_403	2	STRG.4301.1,blat.proc3829889.chain_402	2
scaffold_11	spliced_intron	7924431	7924529	+	asmbl_5663	none	STRG.13793.3,Trinity_GG_7594_c0_g1_i4,blat.proc3829877.chain_2266	3	STRG.13793.2,Trinity_GG_7594_c0_g1_i2,blat.proc3829877.chain_2264	3
scaffold_19	spliced_intron	11489772	11489947	+	asmbl_22506,asmbl_22513	none	STRG.22478.1,Trinity_GG_12429_c0_g1_i3,Trinity_GG_12429_c0_g1_i4,blat.proc3829881.chain_3407,blat.proc3829881.chain_3410	5	Trinity_GG_12429_c0_g1_i1,blat.proc3829881.chain_3408	2
scaffold_12	alternate_exon	7652123	7652208	+	asmbl_8740	none	STRG.14833.2,Trinity_GG_8196_c0_g1_i4,blat.proc3829877.chain_3327	3	STRG.14833.1,STRG.14833.3,Trinity_GG_8196_c0_g1_i2,blat.proc3829877.chain_3325	4
scaffold_14	ends_in_intron	1474145	1474145	-	asmbl_12867	none	Trinity_GG_26375_c1_g1_i1,blat.proc3829895.chain_1434	2	STRG.16782.1,blat.proc3829895.chain_1433	2
scaffold_4	ends_in_intron	10857058	10857058	+	asmbl_43011	none	Trinity_GG_2677_c0_g2_i1	1	STRG.4806.2,blat.proc3829873.chain_1151	2
scaffold_5	alt_donor	12829924	12829925	-	asmbl_45868	none	STRG.6505.1,blat.proc3829889.chain_2591	2	STRG.6505.2,STRG.6505.3,blat.proc3829889.chain_2592	3
scaffold_15	spliced_intron	16266207	16266369	-	asmbl_15836	none	STRG.18970.1,blat.proc3829895.chain_3727	2	Trinity_GG_27663_c0_g1_i2,blat.proc3829895.chain_3728	2
scaffold_1	starts_in_intron	5221681	5221681	-	asmbl_252,asmbl_253	none	STRG.327.2,STRG.327.3,blat.proc3829887.chain_156	3	STRG.327.1,blat.proc3829887.chain_154	2
scaffold_4	alt_donor	15116251	15116252	+	asmbl_43265	none	STRG.5116.2	1	STRG.5116.1,blat.proc3829873.chain_1405	2
scaffold_15	alt_donor	12781083	12781084	+	asmbl_14550	none	STRG.18727.2,blat.proc3829879.chain_3338	2	STRG.18727.1,blat.proc3829879.chain_3339	2
scaffold_11	alt_acceptor	8024104	8024105	+	asmbl_5672	none	STRG.13795.2	1	STRG.13795.1,Trinity_GG_7598_c0_g1_i1,blat.proc3829877.chain_2271	3
scaffold_6	retained_exon	885370	885514	-	asmbl_48033	none	STRG.7153.2	1	STRG.7153.3	1
scaffold_21	retained_intron	730900	730999	+	asmbl_28311	none	STRG.23754.3	1	STRG.23754.2,STRG.23754.5,Trinity_GG_13126_c0_g1_i1,blat.proc3829883.chain_853	4
scaffold_18	retained_intron	2759098	2759324	-	asmbl_19773,asmbl_19775	none	STRG.21125.2,Trinity_GG_28855_c0_g1_i1,blat.proc3829897.chain_2034,blat.proc3829897.chain_2035	4	STRG.21125.1,blat.proc3829897.chain_2032,blat.proc3829897.chain_2033	3
scaffold_2	alt_acceptor	9262356	9262357	-	asmbl_23388,asmbl_23389	none	STRG.2172.1,STRG.2172.2,blat.proc3829887.chain_2082,blat.proc3829887.chain_2083	4	STRG.2172.3	1
scaffold_7	spliced_intron	15020785	15020865	-	asmbl_50168	none	STRG.9508.1,blat.proc3829891.chain_1746	2	blat.proc3829891.chain_1745	1
scaffold_2	alt_donor	17923168	17923169	+	asmbl_25237	none	STRG.2677.2	1	STRG.2677.1,blat.proc3829871.chain_2873,blat.proc3829871.chain_2874	3
scaffold_4	retained_intron	17121837	17122239	-	asmbl_42002,asmbl_42003,asmbl_42004,asmbl_42005	none	STRG.5310.1,STRG.5310.2,STRG.5310.3,STRG.5310.5,Trinity_GG_19980_c0_g1_i1,blat.proc3829889.chain_1382	6	STRG.5310.4	1
scaffold_14	starts_in_intron	1608922	1608922	+	asmbl_11805	none	blat.proc3829879.chain_1539	1	STRG.16791.1,Trinity_GG_9256_c0_g1_i5,blat.proc3829879.chain_1537	3
scaffold_18	starts_in_intron	5022756	5022756	-	asmbl_19866	none	blat.proc3829897.chain_2142	1	STRG.21269.1,blat.proc3829897.chain_2143	2
scaffold_21	retained_exon	3169685	3169834	+	asmbl_28479,asmbl_28481,asmbl_28482,asmbl_28483,asmbl_28484,asmbl_28492	none	STRG.23945.1,STRG.23945.2,STRG.23945.3,blat.proc3829883.chain_1050,blat.proc3829883.chain_1051,blat.proc3829883.chain_1052,blat.proc3829883.chain_1053,blat.proc3829883.chain_1054,blat.proc3829883.chain_1056	9	blat.proc3829883.chain_1049,blat.proc3829883.chain_1055	2
scaffold_14	spliced_intron	218091	218231	-	asmbl_12786,asmbl_12787,asmbl_12788,asmbl_12789	none	STRG.16705.1,STRG.16705.2,STRG.16705.3,STRG.16705.4,blat.proc3829895.chain_1395,blat.proc3829895.chain_1397,blat.proc3829895.chain_1398	7	blat.proc3829895.chain_1399	1
scaffold_7	spliced_intron	12364305	12364430	-	asmbl_50010	none	STRG.9323.1	1	blat.proc3829891.chain_1575	1
scaffold_8	starts_in_intron	12691228	12691228	+	asmbl_52322	none	blat.proc3829875.chain_2948	1	STRG.10436.1,STRG.10436.2,blat.proc3829875.chain_2945,blat.proc3829875.chain_2946,blat.proc3829875.chain_2949	5
scaffold_23	spliced_intron	2032895	2033003	-	asmbl_31407	none	STRG.25657.1	1	Trinity_GG_31354_c0_g1_i5,blat.proc3829899.chain_2756	2
scaffold_24	retained_intron	9952412	9952699	-	asmbl_33149	none	Trinity_GG_32087_c0_g1_i6	1	Trinity_GG_32087_c0_g1_i5	1
scaffold_20	starts_in_intron	7182615	7182615	+	asmbl_25854	none	Trinity_GG_12817_c0_g1_i1,blat.proc3829883.chain_344	2	STRG.23273.1,blat.proc3829883.chain_345	2
scaffold_7	alt_acceptor	18347422	18347423	-	asmbl_50279,asmbl_50281	none	STRG.9657.1,STRG.9657.2,blat.proc3829891.chain_1919	3	STRG.9657.3,blat.proc3829891.chain_1920	2
scaffold_11	retained_exon	17086462	17086527	-	asmbl_7224,asmbl_7229	none	STRG.14362.1,STRG.14362.5	2	STRG.14362.2,blat.proc3829893.chain_2768,blat.proc3829893.chain_2771	3
scaffold_10	retained_exon	12818218	12819520	+	asmbl_4819,asmbl_4821	none	STRG.12857.1,STRG.12857.2,blat.proc3829877.chain_1431	3	blat.proc3829877.chain_1430	1
scaffold_5	ends_in_intron	6617452	6617452	-	asmbl_45507	none	blat.proc3829889.chain_2130	1	STRG.6060.1,STRG.6060.2,blat.proc3829889.chain_2129	3
scaffold_6	retained_intron	126870	126945	-	asmbl_47968	none	STRG.7069.1	1	blat.proc3829889.chain_3043,blat.proc3829889.chain_3044	2
scaffold_2	alternate_exon	16079640	16079698	-	asmbl_23680	none	STRG.2557.3	1	STRG.2557.1,STRG.2557.2,blat.proc3829887.chain_2393	3
scaffold_20	starts_in_intron	11539134	11539134	-	asmbl_27076	none	blat.proc3829899.chain_636	1	STRG.23648.1,Trinity_GG_30174_c0_g1_i1,blat.proc3829899.chain_635	3
scaffold_15	starts_in_intron	9640416	9640416	-	asmbl_15410	none	blat.proc3829895.chain_3179	1	blat.proc3829895.chain_3177,blat.proc3829895.chain_3185	2
scaffold_6	alt_acceptor	17382266	17382267	+	asmbl_47688	none	STRG.8436.2	1	STRG.8436.1,Trinity_GG_4638_c0_g1_i3,blat.proc3829875.chain_821	3
scaffold_10	starts_in_intron	2769586	2769586	-	asmbl_3044	none	blat.proc3829893.chain_536	1	STRG.12088.1,blat.proc3829893.chain_535	2
scaffold_19	skipped_exon	13194590	13195671	-	asmbl_21840,asmbl_21842	none	blat.proc3829897.chain_3362,blat.proc3829897.chain_3368	2	STRG.22682.1,Trinity_GG_29598_c1_g1_i12,blat.proc3829897.chain_3360,blat.proc3829897.chain_3361,blat.proc3829897.chain_3363,blat.proc3829897.chain_3364,blat.proc3829897.chain_3370,blat.proc3829897.chain_3371	8
scaffold_21	alternate_exon	5375411	5375557	-	asmbl_27673	none	STRG.24053.1,blat.proc3829899.chain_1075	2	blat.proc3829899.chain_1076	1
scaffold_22	ends_in_intron	6131685	6131685	+	asmbl_29396	none	blat.proc3829883.chain_2010	1	STRG.24955.3,blat.proc3829883.chain_2007,blat.proc3829883.chain_2009	3
scaffold_17	retained_intron	14040943	14041125	+	asmbl_18494	none	STRG.20863.1,blat.proc3829881.chain_1718	2	STRG.20863.3	1
scaffold_18	alt_acceptor	1901421	1901422	-	asmbl_19688,asmbl_19694,asmbl_19699,asmbl_19700,asmbl_19701,asmbl_19706	none	STRG.21072.10,STRG.21072.2,STRG.21072.4,blat.proc3829897.chain_1892,blat.proc3829897.chain_1902	5	STRG.21072.9,blat.proc3829897.chain_1890,blat.proc3829897.chain_1898	3
scaffold_14	retained_intron	11686951	11687213	-	asmbl_13509	none	blat.proc3829895.chain_2221	1	STRG.17500.1,STRG.17500.2,blat.proc3829895.chain_2222,blat.proc3829895.chain_2223,blat.proc3829895.chain_2224,blat.proc3829895.chain_2225	6
scaffold_10	alternate_exon	1492349	1492404	-	asmbl_2979	none	Trinity_GG_23657_c0_g1_i7,blat.proc3829893.chain_391	2	STRG.12017.2,blat.proc3829893.chain_390	2
scaffold_23	skipped_exon	1850810	1852793	+	asmbl_30665	none	STRG.25646.2,blat.proc3829883.chain_2557	2	STRG.25646.1	1
scaffold_6	skipped_exon	9011491	9011835	+	asmbl_47126	none	STRG.7773.3	1	STRG.7773.1,STRG.7773.2,blat.proc3829875.chain_152,blat.proc3829875.chain_153	4
scaffold_5	alt_donor	69569	69570	+	asmbl_43735	none	STRG.5568.3	1	STRG.5568.1,STRG.5568.2	2
scaffold_11	alt_donor	2500528	2500529	-	asmbl_6489	none	STRG.13391.2	1	STRG.13391.1,blat.proc3829893.chain_1888	2
scaffold_13	alt_acceptor	5819277	5819278	+	asmbl_10880,asmbl_10882	none	STRG.15880.1,STRG.15880.4	2	STRG.15880.3	1
scaffold_16	starts_in_intron	318413	318413	+	asmbl_16814	none	blat.proc3829879.chain_3633	1	STRG.19010.1,STRG.19010.2,Trinity_GG_10426_c0_g1_i3,blat.proc3829879.chain_3632,blat.proc3829879.chain_3634	5
scaffold_4	starts_in_intron	10593363	10593363	-	asmbl_41602	none	Trinity_GG_19677_c0_g1_i4	1	STRG.4803.1	1
scaffold_12	alt_donor	9231563	9231564	-	asmbl_7795,asmbl_7798	none	STRG.14912.5,STRG.14912.6	2	STRG.14912.1,STRG.14912.2,STRG.14912.3,STRG.14912.4,STRG.14912.7,Trinity_GG_25328_c0_g1_i14,blat.proc3829893.chain_3299,blat.proc3829893.chain_3302,blat.proc3829893.chain_3304,blat.proc3829893.chain_3306,blat.proc3829893.chain_3307	11
scaffold_6	retained_intron	299110	299335	+	asmbl_46599,asmbl_46600	none	STRG.7082.3,STRG.7082.4,Trinity_GG_3916_c0_g1_i2,Trinity_GG_3916_c0_g1_i3,blat.proc3829873.chain_3251,blat.proc3829873.chain_3252	6	STRG.7082.1	1
scaffold_13	ends_in_intron	8810329	8810329	-	asmbl_9941	none	STRG.16137.5,blat.proc3829895.chain_936	2	Trinity_GG_26094_c0_g1_i10,blat.proc3829895.chain_937,blat.proc3829895.chain_940,blat.proc3829895.chain_941	4
scaffold_13	retained_intron	517905	520155	+	asmbl_10457	none	STRG.15434.1,blat.proc3829879.chain_114	2	STRG.15434.3,Trinity_GG_8491_c0_g1_i1,blat.proc3829879.chain_110	3
scaffold_10	alt_donor	3066071	3066072	-	asmbl_3069	none	STRG.12119.1,Trinity_GG_23763_c0_g1_i2,blat.proc3829893.chain_569	3	blat.proc3829893.chain_572	1
scaffold_28	alternate_exon	3847557	3848607	-	asmbl_37502	none	STRG.29564.1	1	STRG.29564.2	1
scaffold_26	starts_in_intron	9774305	9774305	+	asmbl_35789	none	blat.proc3829885.chain_1532	1	STRG.28501.1,STRG.28501.10,STRG.28501.3,STRG.28501.5,STRG.28501.9,blat.proc3829885.chain_1535,blat.proc3829885.chain_1538	7
scaffold_7	starts_in_intron	2325665	2325665	+	asmbl_50519	none	Trinity_GG_4769_c0_g1_i2,blat.proc3829875.chain_1101	2	STRG.8668.1,blat.proc3829875.chain_1102	2
scaffold_14	retained_exon	14144219	14144317	+	asmbl_12509,asmbl_12512,asmbl_12515	none	STRG.17676.1,STRG.17676.3,blat.proc3829879.chain_2283,blat.proc3829879.chain_2284	4	STRG.17676.2,STRG.17676.4,STRG.17676.5	3
scaffold_13	retained_intron	8955354	8955451	+	asmbl_11148,asmbl_11149	none	blat.proc3829879.chain_863,blat.proc3829879.chain_865	2	STRG.16151.1,STRG.16151.2,STRG.16151.3,blat.proc3829879.chain_861,blat.proc3829879.chain_862,blat.proc3829879.chain_864	6
scaffold_1	alt_donor	12585457	12585458	+	asmbl_2223	none	STRG.874.1	1	STRG.874.2	1
scaffold_2	skipped_exon	6900364	6901550	+	asmbl_24530,asmbl_24540,asmbl_24542,asmbl_24545	none	STRG.2036.2,STRG.2036.6,Trinity_GG_1103_c0_g1_i2,blat.proc3829871.chain_2015,blat.proc3829871.chain_2020,blat.proc3829871.chain_2022	6	STRG.2036.1,STRG.2036.3,STRG.2036.5,blat.proc3829871.chain_2016,blat.proc3829871.chain_2018,blat.proc3829871.chain_2019	6
scaffold_14	alt_acceptor	399367	399368	+	asmbl_11720,asmbl_11725,asmbl_11729	none	STRG.16722.4,STRG.16722.6,blat.proc3829879.chain_1463	3	STRG.16722.1,STRG.16722.2,STRG.16722.5,blat.proc3829879.chain_1464,blat.proc3829879.chain_1470,blat.proc3829879.chain_1473	6
scaffold_2	starts_in_intron	5703096	5703096	-	asmbl_23182	none	blat.proc3829887.chain_1854	1	STRG.1957.1,STRG.1957.2,STRG.1957.3,blat.proc3829887.chain_1851,blat.proc3829887.chain_1852,blat.proc3829887.chain_1853	6
scaffold_8	alt_donor	2856684	2856685	-	asmbl_52714	none	STRG.9803.1,blat.proc3829891.chain_1939	2	STRG.9803.2,blat.proc3829891.chain_1938	2
scaffold_1	alt_acceptor	14626397	14626398	+	asmbl_2389	none	STRG.1062.2	1	STRG.1062.1,blat.proc3829871.chain_1096,blat.proc3829871.chain_1097	3
scaffold_2	retained_intron	1301947	1302080	+	asmbl_24198	none	STRG.1611.2,Trinity_GG_927_c0_g1_i4,blat.proc3829871.chain_1709	3	STRG.1611.3,Trinity_GG_927_c0_g1_i2,blat.proc3829871.chain_1708	3
scaffold_17	spliced_intron	8540373	8540456	+	asmbl_18122	none	STRG.20458.3	1	STRG.20458.1,STRG.20458.2,blat.proc3829881.chain_1287,blat.proc3829881.chain_1288	4
scaffold_10	alternate_exon	13914735	13915154	+	asmbl_4903	none	blat.proc3829877.chain_1551	1	STRG.12970.2	1
scaffold_6	alternate_exon	16600310	16600367	-	asmbl_49078,asmbl_49079	none	STRG.8376.1,STRG.8376.3,blat.proc3829891.chain_695,blat.proc3829891.chain_696	4	STRG.8376.2	1
scaffold_5	retained_exon	7030345	7030432	+	asmbl_44135,asmbl_44136,asmbl_44137,asmbl_44140	none	STRG.6108.1,STRG.6108.2,STRG.6108.3,blat.proc3829873.chain_2262	4	STRG.6108.4,Trinity_GG_3337_c1_g1_i4,blat.proc3829873.chain_2261	3
scaffold_21	spliced_intron	3726877	3726965	-	asmbl_27554,asmbl_27555,asmbl_27557	none	STRG.23948.1,STRG.23948.2,blat.proc3829899.chain_1020,blat.proc3829899.chain_1021,blat.proc3829899.chain_1022	5	STRG.23948.3	1
scaffold_15	starts_in_intron	9733275	9733275	-	asmbl_15427	none	STRG.18480.2	1	STRG.18480.1,blat.proc3829895.chain_3131	2
scaffold_14	alternate_exon	2888063	2888239	-	asmbl_12961	none	STRG.16870.4,Trinity_GG_26461_c0_g1_i1,blat.proc3829895.chain_1572	3	STRG.16870.1,STRG.16870.3,blat.proc3829895.chain_1570,blat.proc3829895.chain_1574	4
scaffold_21	alternate_exon	11993377	11993657	-	asmbl_28169	none	STRG.24637.1,Trinity_GG_30779_c0_g1_i1,blat.proc3829899.chain_1753	3	STRG.24637.2	1
scaffold_17	starts_in_intron	9031146	9031146	-	asmbl_19186,asmbl_19187	none	STRG.20520.2,blat.proc3829897.chain_1455,blat.proc3829897.chain_1456	3	STRG.20520.1,STRG.20520.3,STRG.20520.4,STRG.20520.5,STRG.20520.6	5
scaffold_11	alt_donor	7049236	7049237	+	asmbl_5616	none	Trinity_GG_7553_c0_g1_i1,blat.proc3829877.chain_2197	2	STRG.13722.1,STRG.13722.3,Trinity_GG_7553_c0_g1_i3,Trinity_GG_7553_c0_g1_i5,Trinity_GG_7553_c0_g1_i7,Trinity_GG_7553_c0_g1_i8,blat.proc3829877.chain_2193,blat.proc3829877.chain_2194,blat.proc3829877.chain_2195,blat.proc3829877.chain_2196	10
scaffold_7	alternate_exon	1227349	1231310	+	asmbl_50468,asmbl_50478,asmbl_50480	none	STRG.8627.3,STRG.8627.5,STRG.8627.6	3	STRG.8627.7	1
scaffold_2	ends_in_intron	2543537	2543537	-	asmbl_22929	none	blat.proc3829887.chain_1539	1	STRG.1696.1,STRG.1696.2,STRG.1696.3,blat.proc3829887.chain_1538,blat.proc3829887.chain_1540	5
scaffold_21	retained_intron	5279754	5280675	-	asmbl_27663,asmbl_27664,asmbl_27667	none	STRG.24056.3,STRG.24056.4,Trinity_GG_30438_c0_g1_i4,blat.proc3829899.chain_1148	4	STRG.24056.1,blat.proc3829899.chain_1144	2
scaffold_26	retained_intron	9840009	9840737	-	asmbl_35068	none	blat.proc3829901.chain_1620	1	STRG.28525.2,Trinity_GG_32930_c0_g1_i2,blat.proc3829901.chain_1621	3
scaffold_17	retained_intron	6390344	6390421	+	asmbl_17979	none	Trinity_GG_11081_c1_g1_i2,blat.proc3829881.chain_1036	2	blat.proc3829881.chain_1035	1
scaffold_22	alternate_exon	11477475	11477630	+	asmbl_29684	none	STRG.25476.2	1	STRG.25476.1,STRG.25476.4,Trinity_GG_14064_c0_g1_i2,Trinity_GG_14064_c0_g1_i4,blat.proc3829883.chain_2402,blat.proc3829883.chain_2404	6
scaffold_19	skipped_exon	13262428	13262871	-	asmbl_21854	none	STRG.22635.2	1	STRG.22635.1,blat.proc3829897.chain_3420,blat.proc3829897.chain_3422	3
scaffold_5	spliced_intron	5064190	5064837	-	asmbl_45414,asmbl_45415	none	STRG.5956.1,STRG.5956.2,Trinity_GG_20370_c0_g1_i3,blat.proc3829889.chain_2047,blat.proc3829889.chain_2049	5	Trinity_GG_20370_c0_g1_i1,blat.proc3829889.chain_2048	2
scaffold_8	retained_intron	8180856	8181693	+	asmbl_51992	none	blat.proc3829875.chain_2572	1	STRG.10093.1,STRG.10093.2,STRG.10093.3,STRG.10093.4,blat.proc3829875.chain_2575	5
scaffold_7	alternate_exon	18393031	18393999	-	asmbl_50290,asmbl_50293	none	Trinity_GG_22427_c0_g1_i15,Trinity_GG_22427_c0_g1_i5,blat.proc3829891.chain_1867,blat.proc3829891.chain_1874	4	STRG.9659.2,STRG.9659.4,blat.proc3829891.chain_1871,blat.proc3829891.chain_1873	4
scaffold_17	ends_in_intron	14630717	14630717	+	asmbl_18536	none	blat.proc3829881.chain_1773	1	STRG.20934.1,STRG.20934.2,STRG.20934.3,blat.proc3829881.chain_1774	4
scaffold_15	alt_donor	15188738	15188739	+	asmbl_14692	none	STRG.18906.2	1	STRG.18906.3	1
scaffold_4	retained_intron	4414707	4415344	+	asmbl_42575,asmbl_42584,asmbl_42587,asmbl_42588	none	Trinity_GG_2404_c0_g1_i10,blat.proc3829873.chain_680,blat.proc3829873.chain_686,blat.proc3829873.chain_690,blat.proc3829873.chain_698	5	STRG.4344.3,Trinity_GG_2404_c0_g1_i19,Trinity_GG_2404_c0_g1_i5,Trinity_GG_2404_c0_g1_i8,blat.proc3829873.chain_681,blat.proc3829873.chain_687,blat.proc3829873.chain_688,blat.proc3829873.chain_689,blat.proc3829873.chain_695,blat.proc3829873.chain_696	10
scaffold_18	starts_in_intron	6775863	6775863	-	asmbl_19950	none	blat.proc3829897.chain_2243	1	STRG.21372.1,STRG.21372.2,blat.proc3829897.chain_2242	3
scaffold_7	retained_exon	4928951	4929060	+	asmbl_50651,asmbl_50662	none	blat.proc3829875.chain_1282,blat.proc3829875.chain_1283	2	STRG.8834.1,STRG.8834.2,blat.proc3829875.chain_1275,blat.proc3829875.chain_1276,blat.proc3829875.chain_1278,blat.proc3829875.chain_1279,blat.proc3829875.chain_1281	7
scaffold_1	starts_in_intron	12060504	12060504	-	asmbl_693	none	blat.proc3829887.chain_704	1	STRG.820.1,STRG.820.3	2
scaffold_9	alt_acceptor	17743197	17743198	+	asmbl_54620	none	STRG.11853.2,blat.proc3829877.chain_522	2	blat.proc3829877.chain_523	1
scaffold_5	starts_in_intron	4834621	4834621	+	asmbl_43969	none	Trinity_GG_3246_c0_g1_i1,blat.proc3829873.chain_2077	2	STRG.5934.1,Trinity_GG_3246_c0_g1_i2,blat.proc3829873.chain_2076	3
scaffold_11	starts_in_intron	12915594	12915594	-	asmbl_7087	none	STRG.14164.1,Trinity_GG_24937_c0_g1_i1,blat.proc3829893.chain_2607	3	STRG.14164.2,STRG.14164.3,blat.proc3829893.chain_2606	3
scaffold_15	retained_intron	1504460	1505131	-	asmbl_14966	none	Trinity_GG_27097_c0_g1_i2,Trinity_GG_27097_c0_g1_i5,blat.proc3829895.chain_2659,blat.proc3829895.chain_2660	4	STRG.17945.1,blat.proc3829895.chain_2662	2
scaffold_21	starts_in_intron	5958812	5958812	-	asmbl_27735	none	blat.proc3829899.chain_1205	1	STRG.24113.1,blat.proc3829899.chain_1203	2
scaffold_10	retained_intron	11917146	11917229	-	asmbl_3707	none	blat.proc3829893.chain_1295	1	STRG.12818.1,STRG.12818.2,blat.proc3829893.chain_1294	3
scaffold_4	skipped_exon	4896325	4898259	-	asmbl_41279	none	STRG.4380.2,blat.proc3829889.chain_480	2	STRG.4380.1,blat.proc3829889.chain_481	2
scaffold_7	retained_exon	11768121	11768276	+	asmbl_51064,asmbl_51065,asmbl_51067	none	STRG.9278.1,blat.proc3829875.chain_1735,blat.proc3829875.chain_1736,blat.proc3829875.chain_1737	4	STRG.9278.2	1
scaffold_14	spliced_intron	8416699	8416856	+	asmbl_12222,asmbl_12226	none	STRG.17265.1,blat.proc3829879.chain_2011,blat.proc3829879.chain_2012	3	STRG.17265.2,blat.proc3829879.chain_2010	2
scaffold_22	retained_intron	497867	498164	+	asmbl_29154	none	STRG.24682.2,blat.proc3829883.chain_1657	2	STRG.24682.1,blat.proc3829883.chain_1656	2
scaffold_16	alt_donor	11767318	11767319	-	asmbl_16547	none	STRG.19688.1	1	blat.proc3829897.chain_657	1
scaffold_19	alt_acceptor	10240084	10240085	-	asmbl_21554	none	STRG.22393.1,blat.proc3829897.chain_3098	2	STRG.22393.2	1
scaffold_11	alt_acceptor	8103023	8103024	+	asmbl_5694,asmbl_5696,asmbl_5697	none	STRG.13811.1,STRG.13811.3,blat.proc3829877.chain_2300,blat.proc3829877.chain_2303	4	STRG.13811.2,blat.proc3829877.chain_2301	2
scaffold_16	alt_donor	12022874	12022875	-	asmbl_16563	none	STRG.19718.3	1	STRG.19718.1,STRG.19718.2,blat.proc3829897.chain_670,blat.proc3829897.chain_671	4
scaffold_3	alt_donor	3834808	3834809	-	asmbl_38741,asmbl_38742	none	STRG.3103.1,blat.proc3829887.chain_2872	2	STRG.3103.2,STRG.3103.3,blat.proc3829887.chain_2873	3
scaffold_22	spliced_intron	322655	323132	+	asmbl_29133,asmbl_29137	none	STRG.24670.3,blat.proc3829883.chain_1729	2	STRG.24670.2,blat.proc3829883.chain_1730	2
scaffold_5	alt_donor	1548585	1548586	-	asmbl_45248,asmbl_45250	none	STRG.5706.1,STRG.5706.3,blat.proc3829889.chain_1819,blat.proc3829889.chain_1821,blat.proc3829901.chain_3398	5	STRG.5706.2	1
scaffold_5	skipped_exon	235742	238214	-	asmbl_45151	none	STRG.5594.1,Trinity_GG_20172_c0_g1_i1,blat.proc3829889.chain_1710	3	STRG.5594.2,STRG.5594.3,STRG.5594.4	3
scaffold_7	retained_intron	8842324	8844151	+	asmbl_50946	none	STRG.9123.1,blat.proc3829875.chain_1575,blat.proc3829875.chain_1576,blat.proc3829875.chain_1577	4	STRG.9123.2,blat.proc3829875.chain_1578	2
scaffold_17	spliced_intron	10037011	10037314	-	asmbl_19273	none	Trinity_GG_28623_c0_g1_i2,blat.proc3829897.chain_1586	2	STRG.20608.1,STRG.20608.4,Trinity_GG_28623_c0_g1_i3,blat.proc3829897.chain_1589	4
scaffold_3	retained_exon	14331973	14332041	+	asmbl_40469,asmbl_40471	none	STRG.3778.1,blat.proc3829873.chain_179,blat.proc3829873.chain_180	3	blat.proc3829873.chain_178	1
scaffold_7	ends_in_intron	10407369	10407369	+	asmbl_51000	none	blat.proc3829875.chain_1587	1	STRG.9214.2	1
scaffold_5	alt_acceptor	16350428	16350429	+	asmbl_44755	none	STRG.6821.1	1	Trinity_GG_3720_c0_g1_i1,blat.proc3829873.chain_2936	2
scaffold_2	spliced_intron	5203179	5203697	+	asmbl_24425	none	Trinity_GG_1078_c0_g1_i5,blat.proc3829871.chain_1970	2	STRG.1940.1,STRG.1940.2,STRG.1940.3,Trinity_GG_1078_c0_g1_i1,Trinity_GG_1078_c0_g1_i2,Trinity_GG_1078_c0_g1_i3,blat.proc3829871.chain_1967,blat.proc3829871.chain_1968,blat.proc3829871.chain_1969,blat.proc3829871.chain_1971	10
scaffold_6	skipped_exon	2881102	2881381	-	asmbl_48126	none	STRG.7279.2,blat.proc3829889.chain_3249	2	STRG.7279.1,blat.proc3829889.chain_3251	2
scaffold_21	starts_in_intron	8526580	8526580	+	asmbl_28829	none	Trinity_GG_13432_c3_g1_i1,blat.proc3829883.chain_1395	2	STRG.24375.1,blat.proc3829883.chain_1389,blat.proc3829883.chain_1391,blat.proc3829883.chain_1392	4
scaffold_14	spliced_intron	15565487	15565540	+	asmbl_12608	none	STRG.17784.3	1	STRG.17784.1	1
scaffold_28	retained_intron	4875335	4875549	-	asmbl_37551	none	Trinity_GG_33590_c1_g1_i1,blat.proc3829901.chain_2709	2	STRG.29625.1,Trinity_GG_33590_c0_g1_i3,Trinity_GG_33590_c0_g1_i4,blat.proc3829901.chain_2706,blat.proc3829901.chain_2707	5
scaffold_9	alternate_exon	12630482	12630561	+	asmbl_54429,asmbl_54432,asmbl_54433	none	STRG.11574.1,STRG.11574.2,Trinity_GG_6469_c0_g1_i5,Trinity_GG_6469_c0_g1_i6,Trinity_GG_6469_c0_g1_i8,blat.proc3829877.chain_353,blat.proc3829877.chain_355,blat.proc3829877.chain_357	8	STRG.11574.3,STRG.11574.4	2
scaffold_7	alt_acceptor	7684317	7684318	-	asmbl_49780	none	STRG.9010.2,blat.proc3829891.chain_1285	2	STRG.9010.1,blat.proc3829891.chain_1284	2
scaffold_16	retained_intron	4655336	4655551	+	asmbl_16988	none	Trinity_GG_10530_c1_g1_i1,blat.proc3829881.chain_74	2	STRG.19239.1,STRG.19239.2,blat.proc3829881.chain_70,blat.proc3829881.chain_71,blat.proc3829881.chain_72	5
scaffold_14	alt_acceptor	583651	583652	+	asmbl_11746	none	STRG.16728.2	1	STRG.16728.3,Trinity_GG_9217_c0_g1_i7,blat.proc3829879.chain_1458	3
scaffold_15	spliced_intron	14324311	14324883	-	asmbl_15729	none	STRG.18855.3	1	Trinity_GG_27599_c0_g1_i1,Trinity_GG_27599_c0_g1_i11,blat.proc3829895.chain_3605	3
scaffold_11	spliced_intron	8790267	8790289	-	asmbl_6860	none	STRG.13891.2	1	STRG.13891.4	1
scaffold_14	alt_acceptor	583761	583762	+	asmbl_11742,asmbl_11745	none	STRG.16728.3,Trinity_GG_9217_c0_g1_i7,blat.proc3829879.chain_1458	3	STRG.16728.2	1
scaffold_10	skipped_exon	9552657	9554812	+	asmbl_4676,asmbl_4681	none	STRG.12692.2,STRG.12692.4,blat.proc3829877.chain_1283	3	STRG.12692.1,STRG.12692.5	2
scaffold_21	alternate_exon	9868388	9868709	-	asmbl_28000	none	STRG.24438.2	1	STRG.24438.3	1
scaffold_17	alt_donor	13610630	13610631	+	asmbl_18460	none	STRG.20825.2	1	STRG.20825.1	1
scaffold_10	starts_in_intron	5393088	5393088	-	asmbl_3275	none	blat.proc3829893.chain_822	1	STRG.12357.1,STRG.12357.2,blat.proc3829893.chain_823,blat.proc3829893.chain_824,blat.proc3829893.chain_825	5
scaffold_15	spliced_intron	15413379	15413488	+	asmbl_14727,asmbl_14728,asmbl_14732,asmbl_14736	none	STRG.18922.1,STRG.18922.5,blat.proc3829879.chain_3550,blat.proc3829879.chain_3555	4	STRG.18922.2,STRG.18922.3,STRG.18922.4,STRG.18922.6,blat.proc3829879.chain_3551,blat.proc3829879.chain_3552,blat.proc3829879.chain_3553,blat.proc3829879.chain_3556,blat.proc3829879.chain_3557	9
scaffold_8	spliced_intron	7483592	7484153	-	asmbl_52903,asmbl_52905	none	STRG.10067.1,blat.proc3829891.chain_2150,blat.proc3829891.chain_2151	3	Trinity_GG_22590_c0_g1_i4,blat.proc3829891.chain_2154	2
scaffold_10	retained_exon	6052475	6052558	+	asmbl_4502,asmbl_4509	none	STRG.12431.3,STRG.12431.4	2	STRG.12431.2,blat.proc3829877.chain_1065,blat.proc3829877.chain_1067	3
scaffold_16	alternate_exon	9425415	9426221	+	asmbl_17281	none	STRG.19529.1,Trinity_GG_10695_c0_g1_i1,blat.proc3829881.chain_405	3	STRG.19529.2,blat.proc3829881.chain_406	2
scaffold_27	alternate_exon	5678632	5678711	+	asmbl_36315,asmbl_36316,asmbl_36317	none	STRG.28956.2,STRG.28956.3,STRG.28956.4,blat.proc3829885.chain_1994,blat.proc3829885.chain_1997,blat.proc3829885.chain_1999	6	STRG.28956.1,blat.proc3829885.chain_1996,blat.proc3829885.chain_1998	3
scaffold_8	alt_acceptor	5698565	5698566	+	asmbl_51883	none	STRG.9980.2	1	STRG.9980.1,Trinity_GG_5555_c1_g1_i1,blat.proc3829875.chain_2482	3
scaffold_17	alt_acceptor	13887063	13887064	-	asmbl_19431	none	STRG.20857.2	1	STRG.20857.1	1
scaffold_14	alt_donor	926450	926451	+	asmbl_11756	none	STRG.16746.1,Trinity_GG_9212_c0_g1_i1	2	STRG.16746.2	1
scaffold_1	alternate_exon	922705	922855	+	asmbl_1440	none	STRG.48.3,blat.proc3829871.chain_15	2	STRG.48.1,STRG.48.2,Trinity_GG_8_c0_g1_i3,Trinity_GG_8_c0_g1_i5,blat.proc3829871.chain_17,blat.proc3829871.chain_18	6
scaffold_643	alt_acceptor	1472	1473	-	asmbl_49428	none	STRG.30389.1	1	STRG.30389.2	1
scaffold_10	starts_in_intron	13544825	13544825	-	asmbl_3807	none	blat.proc3829893.chain_1387	1	STRG.12942.1,blat.proc3829893.chain_1385,blat.proc3829893.chain_1386	3
scaffold_15	starts_in_intron	12222015	12222015	+	asmbl_14491	none	blat.proc3829879.chain_3254	1	STRG.18671.1,blat.proc3829879.chain_3255	2
scaffold_7	alternate_exon	10549304	10549353	-	asmbl_49945	none	STRG.9219.3	1	STRG.9219.1,blat.proc3829891.chain_1473	2
scaffold_13	spliced_intron	16250502	16250639	+	asmbl_11543	none	STRG.16665.1,blat.proc3829879.chain_1371,blat.proc3829879.chain_1401,blat.proc3829879.chain_1403	4	Trinity_GG_9162_c0_g1_i3,Trinity_GG_9183_c0_g1_i2,blat.proc3829879.chain_1372,blat.proc3829879.chain_1402	4
scaffold_2	spliced_intron	1302136	1302291	+	asmbl_24199	none	STRG.1611.3,Trinity_GG_927_c0_g1_i2,blat.proc3829871.chain_1708	3	STRG.1611.2,Trinity_GG_927_c0_g1_i4,blat.proc3829871.chain_1709	3
scaffold_11	skipped_exon	8102683	8103519	+	asmbl_5698	none	STRG.13811.4	1	STRG.13811.1,STRG.13811.2,STRG.13811.3,blat.proc3829877.chain_2300,blat.proc3829877.chain_2301,blat.proc3829877.chain_2303	6
scaffold_21	alternate_exon	1758526	1759216	-	asmbl_27445	none	Trinity_GG_30286_c3_g1_i1,blat.proc3829899.chain_887,blat.proc3829899.chain_891	3	blat.proc3829899.chain_886	1
scaffold_16	alt_acceptor	2173786	2173787	+	asmbl_16900	none	STRG.19105.1,blat.proc3829879.chain_3739	2	blat.proc3829879.chain_3738	1
scaffold_24	alt_acceptor	879841	879842	+	asmbl_32062	none	STRG.26351.2	1	STRG.26351.3	1
scaffold_13	alt_acceptor	13559263	13559264	+	asmbl_11373	none	STRG.16395.1	1	STRG.16395.2	1
scaffold_14	alternate_exon	10716647	10716697	+	asmbl_12324,asmbl_12325	none	STRG.17408.1,Trinity_GG_9575_c0_g1_i1,Trinity_GG_9575_c0_g1_i2,blat.proc3829879.chain_2118,blat.proc3829879.chain_2119	5	STRG.17408.2	1
scaffold_4	alt_acceptor	10447758	10447759	-	asmbl_41590,asmbl_41594	none	STRG.4795.3,blat.proc3829889.chain_835	2	STRG.4795.1,STRG.4795.2,blat.proc3829889.chain_832,blat.proc3829889.chain_834,blat.proc3829889.chain_838,blat.proc3829889.chain_839	6
scaffold_11	starts_in_intron	2618907	2618907	+	asmbl_5330	none	STRG.13389.2,blat.proc3829877.chain_1877	2	STRG.13389.1	1
scaffold_5	alternate_exon	4689474	4689818	-	asmbl_45383	none	blat.proc3829889.chain_2034	1	STRG.5919.1,STRG.5919.4,STRG.5919.6,blat.proc3829889.chain_2026,blat.proc3829889.chain_2028,blat.proc3829889.chain_2029,blat.proc3829889.chain_2032,blat.proc3829889.chain_2033,blat.proc3829889.chain_2035	9
scaffold_27	alt_acceptor	6266988	6266989	-	asmbl_37007	none	STRG.28997.2	1	STRG.28997.1,blat.proc3829901.chain_2157	2
scaffold_28	alt_acceptor	5248897	5248898	-	asmbl_37597	none	blat.proc3829901.chain_2693	1	STRG.29654.1,blat.proc3829901.chain_2694,blat.proc3829901.chain_2695,blat.proc3829901.chain_2696	4
scaffold_1	spliced_intron	11626819	11626939	-	asmbl_655,asmbl_656,asmbl_657	none	STRG.767.1,Trinity_GG_17396_c0_g1_i3,Trinity_GG_17396_c0_g1_i4,blat.proc3829887.chain_614,blat.proc3829887.chain_615	5	blat.proc3829887.chain_617	1
scaffold_6	retained_intron	853752	853844	-	asmbl_48019	none	blat.proc3829889.chain_3140	1	STRG.7143.1,STRG.7143.3,STRG.7143.4,blat.proc3829889.chain_3139	4
scaffold_1	alt_acceptor	13518406	13518407	-	asmbl_820	none	STRG.962.2,blat.proc3829887.chain_763	2	STRG.962.1,blat.proc3829887.chain_761	2
scaffold_15	retained_exon	6883099	6884143	-	asmbl_15279,asmbl_15281,asmbl_15283,asmbl_15286	none	STRG.18290.2,blat.proc3829895.chain_2933,blat.proc3829895.chain_2934,blat.proc3829895.chain_2936,blat.proc3829895.chain_2940	5	STRG.18290.1,STRG.18290.5,STRG.18290.6,blat.proc3829895.chain_2937,blat.proc3829895.chain_2939,blat.proc3829895.chain_2942	6
scaffold_2	alt_donor	4847948	4847949	-	asmbl_23132	none	STRG.1900.2	1	STRG.1900.1,blat.proc3829887.chain_1817	2
scaffold_1	spliced_intron	12683507	12683640	+	asmbl_2233	none	STRG.890.2	1	blat.proc3829871.chain_958	1
scaffold_12	retained_exon	14041360	14041409	+	asmbl_9010	none	STRG.15215.1,Trinity_GG_8373_c0_g1_i2,blat.proc3829877.chain_3650	3	STRG.15215.2,Trinity_GG_8373_c0_g1_i1,blat.proc3829877.chain_3649	3
scaffold_20	spliced_intron	1107445	1107556	-	asmbl_26468	none	blat.proc3829897.chain_3591	1	blat.proc3829897.chain_3592	1
scaffold_10	alt_donor	557658	557659	-	asmbl_2886	none	STRG.11928.2	1	STRG.11928.1,Trinity_GG_23640_c0_g1_i2,blat.proc3829893.chain_356,blat.proc3829893.chain_358	4
scaffold_11	alt_acceptor	17070077	17070078	-	asmbl_7222	none	STRG.14359.3	1	STRG.14359.1,STRG.14359.2,blat.proc3829893.chain_2779,blat.proc3829893.chain_2780	4
scaffold_19	alt_acceptor	11780639	11780640	+	asmbl_22528	none	blat.proc3829881.chain_3448	1	STRG.22492.1,blat.proc3829881.chain_3449	2
scaffold_2	alt_donor	6517311	6517312	+	asmbl_24498,asmbl_24503	none	STRG.2022.1,STRG.2022.2,Trinity_GG_1139_c0_g1_i2	3	STRG.2022.3,STRG.2022.4	2
scaffold_15	alt_acceptor	11167541	11167542	+	asmbl_14429	none	STRG.18583.2	1	STRG.18583.1	1
scaffold_15	retained_intron	12421366	12421557	+	asmbl_14506,asmbl_14507	none	blat.proc3829879.chain_3272,blat.proc3829879.chain_3273	2	STRG.18687.1,blat.proc3829879.chain_3268,blat.proc3829879.chain_3270,blat.proc3829879.chain_3271	4
scaffold_24	retained_intron	6307469	6307627	+	asmbl_32309,asmbl_32310,asmbl_32313	none	STRG.26676.1,STRG.26676.2,blat.proc3829883.chain_3586,blat.proc3829883.chain_3587	4	STRG.26676.4	1
scaffold_1	retained_exon	3286873	3287337	+	asmbl_1590	none	blat.proc3829871.chain_252	1	STRG.204.2	1
scaffold_24	retained_intron	10422912	10423124	+	asmbl_32561	none	Trinity_GG_14914_c0_g1_i1,blat.proc3829885.chain_118	2	STRG.26986.1,blat.proc3829885.chain_119	2
scaffold_22	retained_intron	4221540	4221851	-	asmbl_29987	none	blat.proc3829899.chain_1978	1	STRG.24838.1,STRG.24838.2,STRG.24838.3,STRG.24838.4,blat.proc3829899.chain_1975,blat.proc3829899.chain_1976,blat.proc3829899.chain_1977	7
scaffold_14	retained_exon	3159316	3159468	+	asmbl_11879,asmbl_11880,asmbl_11881,asmbl_11883,asmbl_11885,asmbl_11886,asmbl_11889,asmbl_11890,asmbl_11891,asmbl_11892,asmbl_11894,asmbl_11895,asmbl_11896,asmbl_11897,asmbl_11898	none	STRG.16893.1,STRG.16893.2,STRG.16893.3,blat.proc3829879.chain_1625,blat.proc3829879.chain_1626,blat.proc3829879.chain_1628,blat.proc3829879.chain_1629,blat.proc3829879.chain_1630,blat.proc3829879.chain_1631,blat.proc3829879.chain_1632,blat.proc3829879.chain_1633,blat.proc3829879.chain_1635,blat.proc3829879.chain_1636,blat.proc3829879.chain_1637,blat.proc3829879.chain_1638,blat.proc3829879.chain_1639,blat.proc3829879.chain_1640	17	Trinity_GG_9302_c0_g1_i11,blat.proc3829879.chain_1627,blat.proc3829879.chain_1634	3
scaffold_11	alternate_exon	14531866	14531946	+	asmbl_6066,asmbl_6067,asmbl_6068,asmbl_6069	none	STRG.14239.1,STRG.14239.2,STRG.14239.3,Trinity_GG_7860_c0_g1_i2,Trinity_GG_7860_c0_g1_i6,Trinity_GG_7860_c0_g1_i7,blat.proc3829877.chain_2744,blat.proc3829877.chain_2745,blat.proc3829877.chain_2746,blat.proc3829877.chain_2747	10	blat.proc3829877.chain_2743	1
scaffold_28	starts_in_intron	2267463	2267463	-	asmbl_37350	none	blat.proc3829901.chain_2473	1	STRG.29380.1,STRG.29380.2,STRG.29380.3,Trinity_GG_33458_c0_g1_i4,blat.proc3829901.chain_2467,blat.proc3829901.chain_2468,blat.proc3829901.chain_2469,blat.proc3829901.chain_2470,blat.proc3829901.chain_2471	9
scaffold_7	alternate_exon	11864681	11874284	-	asmbl_49985,asmbl_49986	none	STRG.9297.1,STRG.9297.2	2	blat.proc3829891.chain_1489	1
scaffold_28	retained_intron	5022371	5022502	+	asmbl_38260	none	STRG.29640.1	1	STRG.29640.2	1
scaffold_6	spliced_intron	13229076	13229383	+	asmbl_47441,asmbl_47445,asmbl_47449	none	STRG.8077.1,STRG.8077.4,blat.proc3829875.chain_499,blat.proc3829875.chain_504	4	STRG.8077.2,STRG.8077.3,STRG.8077.7,blat.proc3829875.chain_500,blat.proc3829875.chain_501,blat.proc3829875.chain_503,blat.proc3829875.chain_506	7
scaffold_26	retained_intron	6350865	6351156	-	asmbl_34955	none	STRG.28315.1,blat.proc3829901.chain_1401	2	STRG.28315.5,blat.proc3829901.chain_1406	2
scaffold_16	alt_acceptor	8650119	8650120	+	asmbl_17239,asmbl_17240	none	STRG.19480.3,blat.proc3829881.chain_374	2	STRG.19480.1,STRG.19480.2,blat.proc3829881.chain_375,blat.proc3829881.chain_376	4
scaffold_1	retained_intron	9298014	9298117	+	asmbl_1968	none	Trinity_GG_370_c0_g1_i2,blat.proc3829871.chain_642	2	STRG.626.1,STRG.626.2,Trinity_GG_370_c0_g1_i1,blat.proc3829871.chain_645	4
scaffold_1	retained_intron	9515894	9516029	-	asmbl_548	none	STRG.644.3,blat.proc3829887.chain_521	2	STRG.644.1,STRG.644.2,blat.proc3829887.chain_519,blat.proc3829887.chain_520	4
scaffold_20	alternate_exon	1951395	1951563	-	asmbl_26551	none	STRG.22923.2	1	STRG.22923.1,blat.proc3829897.chain_3699	2
scaffold_2	retained_intron	15271155	15271232	+	asmbl_25033,asmbl_25036	none	blat.proc3829871.chain_2528,blat.proc3829871.chain_2535	2	STRG.2481.1,blat.proc3829871.chain_2524,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2536,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	10
scaffold_17	alt_donor	4809620	4809621	-	asmbl_18933	none	STRG.20208.1	1	STRG.20208.2,blat.proc3829897.chain_1106	2
scaffold_20	alt_donor	1490355	1490356	+	asmbl_25572	none	STRG.22855.3	1	STRG.22855.2	1
scaffold_25	alternate_exon	8704268	8705311	+	asmbl_33749	none	STRG.27679.1,blat.proc3829885.chain_701	2	blat.proc3829885.chain_692,blat.proc3829885.chain_695	2
scaffold_1	ends_in_intron	16005184	16005184	-	asmbl_974	none	Trinity_GG_17612_c0_g1_i1,blat.proc3829887.chain_1027	2	STRG.1123.1,blat.proc3829887.chain_1028	2
scaffold_4	spliced_intron	3243470	3243537	-	asmbl_41170	none	STRG.4248.2	1	STRG.4248.1	1
scaffold_9	starts_in_intron	17466679	17466679	-	asmbl_55611	none	blat.proc3829893.chain_240	1	STRG.11832.1,STRG.11832.2,STRG.11832.3,blat.proc3829893.chain_238,blat.proc3829893.chain_239	5
scaffold_3	starts_in_intron	5750995	5750995	+	asmbl_40037	none	Trinity_GG_1791_c0_g1_i2,blat.proc3829871.chain_3351	2	STRG.3236.2	1
scaffold_23	spliced_intron	4316512	4316611	+	asmbl_30798,asmbl_30799,asmbl_30800	none	STRG.25826.1,blat.proc3829883.chain_2710,blat.proc3829883.chain_2716,blat.proc3829883.chain_2718	4	Trinity_GG_14254_c0_g1_i4,blat.proc3829883.chain_2717	2
scaffold_6	spliced_intron	801723	801746	+	asmbl_46629	none	STRG.7135.3	1	STRG.7135.2	1
scaffold_18	retained_exon	3917647	3918019	-	asmbl_19819	none	blat.proc3829897.chain_2089	1	STRG.21192.3	1
scaffold_6	ends_in_intron	11012773	11012773	-	asmbl_48666	none	Trinity_GG_21511_c0_g1_i1,blat.proc3829891.chain_200	2	STRG.7909.2,STRG.7909.3,STRG.7909.4,blat.proc3829891.chain_198	4
scaffold_11	alt_acceptor	5104545	5104546	+	asmbl_5501	none	STRG.13584.1,blat.proc3829877.chain_2025	2	STRG.13584.2,blat.proc3829877.chain_2026	2
scaffold_2	starts_in_intron	12655706	12655706	-	asmbl_23491	none	STRG.2316.1	1	STRG.2316.2,blat.proc3829887.chain_2181	2
scaffold_2	starts_in_intron	7470457	7470457	-	asmbl_23285,asmbl_23288	none	STRG.2075.2,blat.proc3829887.chain_1898	2	STRG.2075.3,STRG.2075.4,Trinity_GG_18127_c0_g1_i18,Trinity_GG_18127_c0_g1_i8,blat.proc3829887.chain_1892,blat.proc3829887.chain_1893,blat.proc3829887.chain_1895,blat.proc3829887.chain_1896	8
scaffold_5	alternate_exon	16844385	16845527	-	asmbl_46159	none	STRG.6862.2,Trinity_GG_20830_c1_g1_i1,blat.proc3829889.chain_2856,blat.proc3829889.chain_2858	4	STRG.6862.1,blat.proc3829889.chain_2857	2
scaffold_10	spliced_intron	17325221	17326440	-	asmbl_3953	none	STRG.13169.2,blat.proc3829893.chain_1574	2	STRG.13169.3,blat.proc3829893.chain_1572	2
scaffold_2367	alt_acceptor	687	688	-	asmbl_32000	none	STRG.30719.1	1	STRG.30719.2	1
scaffold_4	skipped_exon	15677652	15677958	-	asmbl_41860,asmbl_41861,asmbl_41863	none	STRG.5156.1,STRG.5156.2,blat.proc3829889.chain_1189,blat.proc3829889.chain_1191,blat.proc3829889.chain_1192,blat.proc3829889.chain_1193	6	blat.proc3829889.chain_1190	1
scaffold_14	alt_acceptor	399370	399371	+	asmbl_11728,asmbl_11730	none	STRG.16722.2,STRG.16722.5	2	STRG.16722.1,STRG.16722.4,STRG.16722.6,blat.proc3829879.chain_1463,blat.proc3829879.chain_1464,blat.proc3829879.chain_1470,blat.proc3829879.chain_1473	7
scaffold_4	alternate_exon	1320745	1321383	-	asmbl_41107	none	STRG.4170.2	1	STRG.4170.1,blat.proc3829889.chain_288	2
scaffold_9	alternate_exon	13852585	13856157	-	asmbl_55409	none	blat.proc3829893.chain_31,blat.proc3829893.chain_33	2	blat.proc3829893.chain_36	1
scaffold_4	spliced_intron	12711355	12711630	+	asmbl_43074	none	blat.proc3829873.chain_1195	1	STRG.4912.3,Trinity_GG_2707_c0_g1_i1,blat.proc3829873.chain_1199	3
scaffold_9	alt_acceptor	11889840	11889841	+	asmbl_54377	none	STRG.11505.2	1	STRG.11505.1,blat.proc3829877.chain_291	2
scaffold_16	alt_acceptor	291382	291383	+	asmbl_16802,asmbl_16803,asmbl_16806,asmbl_16807	none	STRG.19012.1,STRG.19012.2,Trinity_GG_10430_c0_g1_i2,Trinity_GG_10430_c0_g1_i4,blat.proc3829879.chain_3641,blat.proc3829879.chain_3642	6	STRG.19012.3,blat.proc3829879.chain_3638,blat.proc3829879.chain_3639	3
scaffold_6	alt_donor	3291114	3291115	+	asmbl_46773	none	blat.proc3829873.chain_3454	1	STRG.7328.1,blat.proc3829873.chain_3455	2
scaffold_25	alternate_exon	7207492	7211713	-	asmbl_34358	none	STRG.27559.1,blat.proc3829901.chain_888	2	STRG.27559.2	1
scaffold_11	retained_intron	8601859	8601985	+	asmbl_5770	none	Trinity_GG_7654_c0_g1_i1,blat.proc3829877.chain_2378	2	STRG.13863.1,STRG.13863.2,STRG.13863.3,Trinity_GG_7654_c0_g1_i2,Trinity_GG_7654_c0_g1_i7,blat.proc3829877.chain_2375,blat.proc3829877.chain_2376,blat.proc3829877.chain_2379	8
scaffold_15	retained_intron	11941297	11941598	-	asmbl_15558	none	blat.proc3829895.chain_3338	1	STRG.18626.1,blat.proc3829895.chain_3336	2
scaffold_5	alt_donor	16519191	16519192	-	asmbl_46130	none	blat.proc3829889.chain_2879	1	STRG.6833.1,blat.proc3829889.chain_2877	2
scaffold_22	alt_acceptor	4282918	4282919	-	asmbl_30007	none	blat.proc3829899.chain_1955	1	STRG.24837.1,STRG.24837.2,STRG.24837.3,blat.proc3829899.chain_1952,blat.proc3829899.chain_1956	5
scaffold_5	starts_in_intron	3982710	3982710	-	asmbl_45328	none	blat.proc3829889.chain_1888	1	STRG.5864.1,blat.proc3829889.chain_1886,blat.proc3829889.chain_1887	3
scaffold_22	alternate_exon	6222004	6222120	-	asmbl_30094	none	STRG.24965.4	1	STRG.24965.1,STRG.24965.2	2
scaffold_43	alt_acceptor	829	830	-	asmbl_43671,asmbl_43673	none	STRG.30025.1,STRG.30025.4	2	STRG.30025.3	1
scaffold_18	alt_donor	6609209	6609210	-	asmbl_19942	none	STRG.21364.2	1	STRG.21364.1	1
scaffold_27	ends_in_intron	145657	145657	-	asmbl_36595	none	STRG.28528.3,Trinity_GG_32960_c0_g1_i5,blat.proc3829901.chain_1701	3	Trinity_GG_32960_c0_g1_i2,blat.proc3829901.chain_1702	2
scaffold_5	alternate_exon	15706085	15707705	+	asmbl_44672,asmbl_44675	none	STRG.6756.1,blat.proc3829873.chain_2831,blat.proc3829873.chain_2832	3	STRG.6756.3	1
scaffold_8	alt_donor	12693269	12693270	+	asmbl_52317,asmbl_52318,asmbl_52322	none	blat.proc3829875.chain_2945,blat.proc3829875.chain_2946,blat.proc3829875.chain_2948	3	STRG.10436.1,STRG.10436.2	2
scaffold_2	spliced_intron	17932892	17932980	-	asmbl_23775	none	STRG.2682.2	1	STRG.2682.1,blat.proc3829887.chain_2512	2
scaffold_16	starts_in_intron	3780800	3780800	+	asmbl_16943	none	blat.proc3829881.chain_28	1	STRG.19173.1,blat.proc3829881.chain_26,blat.proc3829881.chain_27	3
scaffold_10	alt_acceptor	17687722	17687723	+	asmbl_5064	none	STRG.13211.1	1	STRG.13211.2	1
scaffold_4	retained_exon	16433906	16434069	-	asmbl_41920,asmbl_41921	none	STRG.5221.2,STRG.5221.3	2	STRG.5221.1	1
scaffold_19	alt_acceptor	623985	623986	-	asmbl_21193	none	STRG.21833.2	1	STRG.21833.1,STRG.21833.3,blat.proc3829897.chain_2601	3
scaffold_17	starts_in_intron	6698624	6698624	+	asmbl_17998	none	Trinity_GG_11126_c0_g1_i2,blat.proc3829881.chain_1102	2	STRG.20313.1,blat.proc3829881.chain_1103	2
scaffold_19	ends_in_intron	12492446	12492446	+	asmbl_22621	none	STRG.22568.2	1	STRG.22568.1,STRG.22568.3,STRG.22568.4,STRG.22568.5,STRG.22568.6,blat.proc3829881.chain_3533,blat.proc3829881.chain_3534,blat.proc3829881.chain_3535	8
scaffold_9	retained_intron	9853052	9854248	+	asmbl_54248,asmbl_54250	none	STRG.11344.2,Trinity_GG_6307_c0_g1_i5,blat.proc3829877.chain_64,blat.proc3829877.chain_66	4	STRG.11344.3	1
scaffold_17	spliced_intron	9868526	9868619	-	asmbl_19259,asmbl_19260,asmbl_19261,asmbl_19262	none	STRG.20591.1,STRG.20591.3,blat.proc3829897.chain_1549,blat.proc3829897.chain_1550	4	STRG.20591.2	1
scaffold_12	retained_exon	9668732	9669967	+	asmbl_8836	none	STRG.14928.1	1	Trinity_GG_8223_c0_g1_i3,blat.proc3829877.chain_3378	2
scaffold_19	retained_exon	13262630	13262802	-	asmbl_21851,asmbl_21852	none	STRG.22635.1,blat.proc3829897.chain_3420,blat.proc3829897.chain_3422	3	STRG.22635.2	1
scaffold_3	retained_exon	2183328	2183412	-	asmbl_38690	none	blat.proc3829885.chain_3316,blat.proc3829887.chain_2804	2	STRG.3014.1,blat.proc3829885.chain_3317,blat.proc3829887.chain_2805	3
scaffold_9	retained_intron	13278875	13279273	+	asmbl_54471	none	STRG.11615.1,blat.proc3829877.chain_402	2	STRG.11615.3	1
scaffold_1	spliced_intron	855214	855406	+	asmbl_1420,asmbl_1424,asmbl_1425,asmbl_1426	none	STRG.42.1,STRG.42.2,STRG.42.3,STRG.42.6,Trinity_GG_38_c0_g1_i9,blat.proc3829871.chain_70	6	STRG.42.4,STRG.42.5	2
scaffold_20	starts_in_intron	9100882	9100882	+	asmbl_25984	none	Trinity_GG_12953_c0_g1_i1,blat.proc3829883.chain_543	2	STRG.23442.1,STRG.23442.2,Trinity_GG_12953_c0_g1_i2,blat.proc3829883.chain_540,blat.proc3829883.chain_541	5
scaffold_11	retained_intron	2500321	2500529	-	asmbl_6487	none	Trinity_GG_24528_c0_g1_i1,blat.proc3829893.chain_1887	2	STRG.13391.2	1
scaffold_2	retained_exon	2881881	2881925	-	asmbl_22956,asmbl_22963,asmbl_22964	none	STRG.1733.2,blat.proc3829887.chain_1492,blat.proc3829887.chain_1496,blat.proc3829887.chain_1500	4	STRG.1733.1,STRG.1733.3,STRG.1733.4,blat.proc3829887.chain_1493,blat.proc3829887.chain_1494,blat.proc3829887.chain_1497,blat.proc3829887.chain_1498	7
scaffold_18	alt_acceptor	1671556	1671557	+	asmbl_20398	none	STRG.21040.2,blat.proc3829881.chain_1944	2	STRG.21040.1,blat.proc3829881.chain_1943	2
scaffold_11	alternate_exon	6663781	6663877	-	asmbl_6709,asmbl_6710	none	STRG.13702.1,STRG.13702.2,Trinity_GG_24688_c0_g1_i1,blat.proc3829893.chain_2158,blat.proc3829893.chain_2159	5	STRG.13702.3	1
scaffold_4	alternate_exon	12936858	12936913	-	asmbl_41704	none	STRG.4938.2,blat.proc3829889.chain_980	2	STRG.4938.1,blat.proc3829889.chain_981	2
scaffold_4	retained_intron	5651885	5652027	-	asmbl_41355,asmbl_41356,asmbl_41360,asmbl_41364	none	STRG.4469.1,Trinity_GG_19533_c0_g1_i2,blat.proc3829889.chain_602,blat.proc3829889.chain_607,blat.proc3829889.chain_610	5	blat.proc3829889.chain_609	1
scaffold_4	spliced_intron	8097999	8098087	-	asmbl_41486	none	STRG.4626.1	1	Trinity_GG_19604_c0_g1_i2	1
scaffold_10	alt_acceptor	9004205	9004206	+	asmbl_4629	none	STRG.12637.1	1	STRG.12637.2,STRG.12637.3,STRG.12637.4,blat.proc3829877.chain_1127	4
scaffold_5	alt_acceptor	14680587	14680588	+	asmbl_44623	none	STRG.6663.2,Trinity_GG_3607_c0_g1_i1,blat.proc3829873.chain_2740	3	Trinity_GG_3607_c0_g1_i2,blat.proc3829873.chain_2738	2
scaffold_7	alt_acceptor	5183050	5183051	-	asmbl_49690	none	STRG.8845.3	1	STRG.8845.2,blat.proc3829891.chain_1158	2
scaffold_24	alt_acceptor	1338819	1338820	+	asmbl_32081	none	STRG.26372.2	1	STRG.26372.1	1
scaffold_9	alt_donor	9694607	9694608	-	asmbl_55200,asmbl_55204	none	STRG.11334.1,blat.proc3829891.chain_3512,blat.proc3829891.chain_3514	3	STRG.11334.2,STRG.11334.3,blat.proc3829891.chain_3513,blat.proc3829891.chain_3515	4
scaffold_11	alternate_exon	8707717	8707898	-	asmbl_6851	none	STRG.13885.2	1	STRG.13885.1,Trinity_GG_24761_c1_g1_i1,blat.proc3829893.chain_2301	3
scaffold_23	alt_acceptor	1606072	1606073	+	asmbl_30653,asmbl_30654	none	STRG.25619.1,blat.proc3829883.chain_2536,blat.proc3829883.chain_2538	3	blat.proc3829883.chain_2537	1
scaffold_1	retained_intron	855214	855406	+	asmbl_1423,asmbl_1427	none	STRG.42.4,STRG.42.5	2	STRG.42.1,STRG.42.2,STRG.42.3,STRG.42.6,Trinity_GG_38_c0_g1_i9,blat.proc3829871.chain_70	6
scaffold_18	alt_acceptor	7185351	7185352	+	asmbl_20746	none	STRG.21414.3	1	STRG.21414.1,STRG.21414.2,Trinity_GG_11822_c0_g1_i1,blat.proc3829881.chain_2373	4
scaffold_9	alt_acceptor	12335972	12335973	-	asmbl_55337	none	STRG.11544.1	1	STRG.11544.2	1
scaffold_14	retained_exon	15584767	15585028	+	asmbl_12614	none	STRG.17785.2	1	STRG.17785.3,STRG.17785.4	2
scaffold_15	retained_intron	2603367	2603410	+	asmbl_14011	none	STRG.18026.1,Trinity_GG_9909_c0_g1_i1,blat.proc3829879.chain_2687	3	STRG.18026.2,STRG.18026.3	2
scaffold_11	retained_intron	13256356	13256573	+	asmbl_6021	none	blat.proc3829877.chain_2653	1	STRG.14184.1,STRG.14184.2,STRG.14184.3,blat.proc3829877.chain_2651,blat.proc3829877.chain_2654	5
scaffold_14	ends_in_intron	6880757	6880757	+	asmbl_12086	none	blat.proc3829879.chain_1862	1	STRG.17112.1,blat.proc3829879.chain_1861	2
scaffold_16	spliced_intron	795167	795376	+	asmbl_16842	none	STRG.19045.1,blat.proc3829879.chain_3657	2	STRG.19045.2,blat.proc3829879.chain_3658	2
scaffold_15	alt_donor	15870636	15870637	+	asmbl_14786,asmbl_14787	none	STRG.18959.1,STRG.18959.3	2	STRG.18959.2,blat.proc3829879.chain_3576	2
scaffold_2	alternate_exon	3745806	3745959	-	asmbl_23020	none	STRG.1805.2,blat.proc3829887.chain_1627	2	STRG.1805.1,blat.proc3829887.chain_1628	2
scaffold_14	alt_acceptor	3156073	3156074	+	asmbl_11879,asmbl_11880,asmbl_11881,asmbl_11883,asmbl_11885,asmbl_11886,asmbl_11891,asmbl_11892,asmbl_11893,asmbl_11894,asmbl_11895,asmbl_11896,asmbl_11897,asmbl_11898	none	STRG.16893.1,STRG.16893.2,STRG.16893.3,blat.proc3829879.chain_1625,blat.proc3829879.chain_1626,blat.proc3829879.chain_1628,blat.proc3829879.chain_1629,blat.proc3829879.chain_1630,blat.proc3829879.chain_1631,blat.proc3829879.chain_1632,blat.proc3829879.chain_1634,blat.proc3829879.chain_1635,blat.proc3829879.chain_1636,blat.proc3829879.chain_1637,blat.proc3829879.chain_1638,blat.proc3829879.chain_1639	16	blat.proc3829879.chain_1633,blat.proc3829879.chain_1640	2
scaffold_2	retained_intron	2871451	2871540	-	asmbl_22967	none	blat.proc3829887.chain_1490	1	STRG.1733.1,blat.proc3829887.chain_1491	2
scaffold_13	starts_in_intron	15510179	15510179	+	asmbl_11492	none	STRG.16580.2	1	blat.proc3829879.chain_1334	1
scaffold_3	retained_intron	17780927	17781032	+	asmbl_40652	none	STRG.3993.1,Trinity_GG_2236_c0_g1_i1,blat.proc3829873.chain_383	3	STRG.3993.2	1
scaffold_3	retained_exon	14670173	14670250	+	asmbl_40503,asmbl_40505	none	STRG.3808.2,STRG.3808.3,Trinity_GG_2137_c0_g1_i1,blat.proc3829873.chain_211	4	STRG.3808.1,Trinity_GG_2137_c0_g1_i3,blat.proc3829873.chain_212	3
scaffold_5	alternate_exon	10163270	10163586	+	asmbl_44330	none	STRG.6309.3,blat.proc3829873.chain_2449	2	STRG.6309.1,blat.proc3829873.chain_2450	2
scaffold_4	alt_acceptor	14632327	14632328	-	asmbl_41804	none	STRG.5090.2	1	STRG.5090.1,blat.proc3829889.chain_1115	2
scaffold_5	retained_intron	6658604	6658738	+	asmbl_44104	none	STRG.6065.3,blat.proc3829873.chain_2177	2	STRG.6065.2	1
scaffold_3	retained_exon	16799187	16799398	-	asmbl_39464	none	STRG.3933.1	1	STRG.3933.2,blat.proc3829887.chain_3701	2
scaffold_10	alt_acceptor	9102060	9102061	-	asmbl_3585	none	STRG.12651.2,blat.proc3829893.chain_1161	2	STRG.12651.1	1
scaffold_7	spliced_intron	12447826	12448128	-	asmbl_50036,asmbl_50037,asmbl_50038,asmbl_50039,asmbl_50042,asmbl_50044	none	STRG.9342.1,STRG.9342.2,Trinity_GG_22282_c1_g1_i12,Trinity_GG_22282_c1_g1_i7,blat.proc3829891.chain_1604,blat.proc3829891.chain_1607,blat.proc3829891.chain_1608,blat.proc3829891.chain_1610,blat.proc3829891.chain_1611	9	blat.proc3829891.chain_1606	1
scaffold_21	starts_in_intron	10330712	10330712	-	asmbl_28061	none	STRG.24486.2	1	STRG.24486.3	1
scaffold_6	retained_exon	17886316	17886424	+	asmbl_47736,asmbl_47739	none	STRG.8475.3,Trinity_GG_4642_c0_g1_i1,Trinity_GG_4642_c0_g1_i2,blat.proc3829875.chain_827,blat.proc3829875.chain_832	5	Trinity_GG_4642_c0_g1_i3,blat.proc3829875.chain_829	2
scaffold_16	skipped_exon	206267	206971	+	asmbl_16791,asmbl_16792	none	STRG.18998.1,Trinity_GG_10416_c0_g1_i2,Trinity_GG_10416_c0_g1_i3,blat.proc3829879.chain_3610,blat.proc3829879.chain_3612	5	Trinity_GG_10416_c0_g1_i1,blat.proc3829879.chain_3611	2
scaffold_8	retained_intron	10245429	10245640	+	asmbl_52155	none	blat.proc3829875.chain_2790	1	STRG.10282.1,STRG.10282.2,STRG.10282.4,blat.proc3829875.chain_2791,blat.proc3829875.chain_2792,blat.proc3829875.chain_2793	6
scaffold_15	alternate_exon	380858	381136	+	asmbl_13907	none	STRG.17877.1	1	STRG.17877.3,blat.proc3829879.chain_2549	2
scaffold_14	alt_acceptor	7443746	7443747	-	asmbl_13186,asmbl_13187	none	STRG.17168.2,Trinity_GG_26575_c0_g1_i1,Trinity_GG_26575_c0_g1_i2,blat.proc3829895.chain_1747,blat.proc3829895.chain_1748	5	STRG.17168.1	1
scaffold_1	retained_exon	14965422	14965493	+	asmbl_2394	none	STRG.1069.1,blat.proc3829871.chain_1099	2	STRG.1069.2	1
scaffold_3	alternate_exon	9845790	9847122	-	asmbl_39024	none	STRG.3457.2,blat.proc3829887.chain_3242	2	blat.proc3829887.chain_3241	1
scaffold_17	starts_in_intron	684082	684082	+	asmbl_17687,asmbl_17689	none	STRG.19909.2,STRG.19909.3,blat.proc3829881.chain_717	3	STRG.19909.1,blat.proc3829881.chain_718	2
scaffold_11	starts_in_intron	10177106	10177106	+	asmbl_5888	none	blat.proc3829877.chain_2495	1	STRG.14018.1,blat.proc3829877.chain_2494	2
scaffold_19	alt_donor	13262293	13262294	-	asmbl_21854	none	STRG.22635.2	1	STRG.22635.1,blat.proc3829897.chain_3420,blat.proc3829897.chain_3422	3
scaffold_12	skipped_exon	4609577	4610289	-	asmbl_7549,asmbl_7551	none	STRG.14626.3,blat.proc3829893.chain_2997	2	STRG.14626.1,STRG.14626.2,blat.proc3829893.chain_2998,blat.proc3829893.chain_3000,blat.proc3829893.chain_3001	5
scaffold_2	alt_donor	7470851	7470852	-	asmbl_23290	none	blat.proc3829887.chain_1896	1	STRG.2075.3,STRG.2075.4,Trinity_GG_18127_c0_g1_i18,Trinity_GG_18127_c0_g1_i8,blat.proc3829887.chain_1892,blat.proc3829887.chain_1893,blat.proc3829887.chain_1895	7
scaffold_19	skipped_exon	13173372	13173750	+	asmbl_22674	none	Trinity_GG_12483_c0_g1_i3,blat.proc3829881.chain_3527	2	STRG.22628.1,blat.proc3829881.chain_3526,blat.proc3829881.chain_3528	3
scaffold_10	spliced_intron	11486695	11488591	+	asmbl_4738	none	STRG.12796.1	1	STRG.12796.2,Trinity_GG_7058_c0_g2_i1,blat.proc3829877.chain_1372	3
scaffold_10	starts_in_intron	6448342	6448342	-	asmbl_3374	none	blat.proc3829893.chain_931	1	blat.proc3829893.chain_932,blat.proc3829893.chain_933	2
scaffold_13	skipped_exon	12251472	12253769	+	asmbl_11328	none	STRG.16339.2,Trinity_GG_8947_c0_g1_i1,blat.proc3829879.chain_1006	3	STRG.16339.1,Trinity_GG_8947_c0_g1_i3,blat.proc3829879.chain_1007	3
scaffold_25	alt_donor	7905494	7905495	-	asmbl_34385	none	blat.proc3829901.chain_903	1	blat.proc3829901.chain_904	1
scaffold_4	retained_intron	12571017	12571399	-	asmbl_41676	none	blat.proc3829889.chain_967	1	STRG.4898.2,blat.proc3829889.chain_966	2
scaffold_13	spliced_intron	5802919	5803440	+	asmbl_10879,asmbl_10880,asmbl_10881,asmbl_10882,asmbl_10885	none	STRG.15880.1,STRG.15880.2,STRG.15880.3,STRG.15880.4,blat.proc3829879.chain_647,blat.proc3829879.chain_648	6	blat.proc3829879.chain_649	1
scaffold_6	spliced_intron	12053399	12053576	-	asmbl_48720	none	STRG.7973.1,blat.proc3829891.chain_249	2	Trinity_GG_21543_c0_g1_i2,blat.proc3829891.chain_247	2
scaffold_4	retained_intron	4417303	4417393	+	asmbl_42574,asmbl_42575,asmbl_42584,asmbl_42586,asmbl_42590	none	Trinity_GG_2404_c0_g1_i10,Trinity_GG_2404_c0_g1_i19,blat.proc3829873.chain_685,blat.proc3829873.chain_686,blat.proc3829873.chain_687,blat.proc3829873.chain_689,blat.proc3829873.chain_690	7	STRG.4344.1,STRG.4344.2,STRG.4344.3,STRG.4344.4,Trinity_GG_2404_c0_g1_i5,blat.proc3829873.chain_681,blat.proc3829873.chain_682,blat.proc3829873.chain_691,blat.proc3829873.chain_696,blat.proc3829873.chain_697,blat.proc3829873.chain_698	11
scaffold_26	retained_exon	2962932	2962975	-	asmbl_34733,asmbl_34735,asmbl_34738	none	STRG.27973.1,STRG.27973.3,blat.proc3829901.chain_1232,blat.proc3829901.chain_1234,blat.proc3829901.chain_1235	5	STRG.27973.2,STRG.27973.4,blat.proc3829901.chain_1233	3
scaffold_19	alt_acceptor	8213429	8213430	-	asmbl_21489	none	STRG.22258.1,blat.proc3829897.chain_2998	2	STRG.22258.2,blat.proc3829897.chain_2996,blat.proc3829897.chain_2997	3
scaffold_3	starts_in_intron	8308040	8308040	-	asmbl_38985	none	Trinity_GG_18843_c0_g1_i1	1	STRG.3400.1	1
scaffold_16	alt_acceptor	2173337	2173338	+	asmbl_16901	none	blat.proc3829879.chain_3738	1	STRG.19105.1,blat.proc3829879.chain_3739	2
scaffold_26	alt_donor	5862610	5862611	+	asmbl_35576	none	blat.proc3829885.chain_1300	1	STRG.28276.1,blat.proc3829885.chain_1301	2
scaffold_9	spliced_intron	15396303	15396380	+	asmbl_54543,asmbl_54544,asmbl_54545,asmbl_54549	none	STRG.11731.1,STRG.11731.2,STRG.11731.3,Trinity_GG_6522_c0_g1_i1,Trinity_GG_6522_c0_g1_i5,Trinity_GG_6522_c0_g1_i6,blat.proc3829877.chain_441,blat.proc3829877.chain_442,blat.proc3829877.chain_443	9	Trinity_GG_6522_c0_g1_i4,blat.proc3829877.chain_444	2
scaffold_13	alt_acceptor	11379478	11379479	-	asmbl_10041,asmbl_10042,asmbl_10050,asmbl_10053,asmbl_10054	none	STRG.16287.5,STRG.16287.7,Trinity_GG_26140_c0_g1_i3,Trinity_GG_26140_c0_g1_i4,Trinity_GG_26140_c0_g1_i7,blat.proc3829895.chain_1026,blat.proc3829895.chain_1030,blat.proc3829895.chain_1033	8	STRG.16287.1,STRG.16287.2,STRG.16287.3,STRG.16287.4,Trinity_GG_26140_c0_g1_i1,Trinity_GG_26140_c0_g1_i5,Trinity_GG_26140_c0_g1_i8,blat.proc3829895.chain_1024,blat.proc3829895.chain_1028,blat.proc3829895.chain_1034	10
scaffold_13	alt_acceptor	381543	381544	-	asmbl_9291,asmbl_9294	none	STRG.15421.1,STRG.15421.2,blat.proc3829895.chain_149	3	STRG.15421.3,STRG.15421.4,blat.proc3829895.chain_150,blat.proc3829895.chain_151	4
scaffold_4	alt_donor	4827214	4827215	+	asmbl_42635	none	STRG.4372.1,Trinity_GG_2436_c0_g1_i1,blat.proc3829873.chain_768	3	STRG.4372.2	1
scaffold_6	alt_acceptor	1751740	1751741	-	asmbl_48059,asmbl_48063,asmbl_48067,asmbl_48069	none	STRG.7224.6,STRG.7224.8,blat.proc3829889.chain_3170,blat.proc3829889.chain_3174,blat.proc3829889.chain_3176	5	STRG.7224.1,STRG.7224.3,STRG.7224.4,STRG.7224.5,STRG.7224.7,blat.proc3829889.chain_3171,blat.proc3829889.chain_3172,blat.proc3829889.chain_3175	8
scaffold_27	starts_in_intron	5926591	5926591	-	asmbl_37000	none	blat.proc3829901.chain_2164	1	STRG.28980.1,STRG.28980.2,blat.proc3829901.chain_2163,blat.proc3829901.chain_2165	4
scaffold_23	alt_acceptor	10331282	10331283	+	asmbl_31143	none	STRG.26228.2	1	STRG.26228.3	1
scaffold_13	starts_in_intron	9220223	9220223	+	asmbl_11161	none	STRG.16166.2	1	STRG.16166.1,blat.proc3829879.chain_872	2
scaffold_20	alt_acceptor	417145	417146	+	asmbl_25500	none	STRG.22721.2	1	STRG.22721.1,blat.proc3829881.chain_3644	2
scaffold_10	retained_intron	5390028	5390782	+	asmbl_4445	none	Trinity_GG_6848_c0_g1_i3,blat.proc3829877.chain_993	2	STRG.12356.1,blat.proc3829877.chain_992	2
scaffold_7	alt_donor	6624509	6624510	+	asmbl_50755	none	STRG.8925.3	1	STRG.8925.4	1
scaffold_10	alt_acceptor	10780273	10780274	+	asmbl_4711,asmbl_4712	none	STRG.12755.1,STRG.12755.3	2	STRG.12755.2	1
scaffold_25	alt_acceptor	5996645	5996646	-	asmbl_34270	none	STRG.27469.2	1	STRG.27469.1	1
scaffold_15	alt_acceptor	15189127	15189128	+	asmbl_14675,asmbl_14676,asmbl_14682,asmbl_14685,asmbl_14688	none	STRG.18906.1,blat.proc3829879.chain_3474,blat.proc3829879.chain_3477,blat.proc3829879.chain_3479,blat.proc3829879.chain_3482,blat.proc3829879.chain_3484	6	STRG.18906.2,STRG.18906.3,blat.proc3829879.chain_3473,blat.proc3829879.chain_3487	4
scaffold_8	spliced_intron	8901327	8902097	-	asmbl_52975	none	STRG.10137.3	1	STRG.10137.2,blat.proc3829891.chain_2318	2
scaffold_1	spliced_intron	10949081	10950931	+	asmbl_2027	none	STRG.713.1,blat.proc3829871.chain_751	2	STRG.713.2,blat.proc3829871.chain_748,blat.proc3829871.chain_753	3
scaffold_15	alt_acceptor	12392270	12392271	-	asmbl_15591,asmbl_15592,asmbl_15593	none	STRG.18686.2,STRG.18686.3,STRG.18686.5	3	STRG.18686.4,blat.proc3829895.chain_3457	2
scaffold_19	starts_in_intron	13020576	13020576	+	asmbl_22655	none	Trinity_GG_12513_c1_g1_i1,blat.proc3829881.chain_3590	2	STRG.22611.1	1
scaffold_26	retained_intron	3591176	3591371	+	asmbl_35331	none	STRG.28022.1	1	blat.proc3829885.chain_999	1
scaffold_6	starts_in_intron	10150464	10150464	-	asmbl_48598	none	Trinity_GG_21449_c0_g1_i1,blat.proc3829891.chain_106	2	STRG.7840.1,Trinity_GG_21449_c0_g1_i2,blat.proc3829891.chain_107	3
scaffold_13	starts_in_intron	8796621	8796621	-	asmbl_9934	none	Trinity_GG_26054_c0_g1_i1,blat.proc3829895.chain_871	2	Trinity_GG_26054_c0_g1_i3,blat.proc3829895.chain_872	2
scaffold_13	spliced_intron	4602269	4602712	-	asmbl_9610	none	Trinity_GG_25880_c0_g1_i1,blat.proc3829895.chain_530	2	STRG.15781.2,Trinity_GG_25880_c0_g1_i6,blat.proc3829895.chain_528,blat.proc3829895.chain_531	4
scaffold_1	starts_in_intron	11425597	11425597	+	asmbl_2096	none	blat.proc3829871.chain_803	1	STRG.751.1,STRG.751.2,blat.proc3829871.chain_801	3
scaffold_8	retained_intron	9870650	9870718	+	asmbl_52108	none	blat.proc3829875.chain_2695	1	blat.proc3829875.chain_2693	1
scaffold_3	retained_exon	6177589	6177666	-	asmbl_38857	none	blat.proc3829887.chain_2944	1	blat.proc3829887.chain_2942,blat.proc3829887.chain_2945	2
scaffold_3	alternate_exon	14490491	14490536	-	asmbl_39328	none	Trinity_GG_19109_c1_g1_i2,blat.proc3829887.chain_3593	2	STRG.3788.1,blat.proc3829887.chain_3592	2
scaffold_20	spliced_intron	10384754	10384960	+	asmbl_26109,asmbl_26115	none	STRG.23569.5,Trinity_GG_12979_c0_g1_i2,blat.proc3829883.chain_594	3	blat.proc3829883.chain_590	1
scaffold_5	retained_intron	1249677	1249957	-	asmbl_45237,asmbl_45238	none	Trinity_GG_20219_c0_g1_i5,Trinity_GG_20219_c0_g1_i6,blat.proc3829889.chain_1781,blat.proc3829889.chain_1785	4	STRG.5683.1,blat.proc3829889.chain_1782,blat.proc3829889.chain_1783,blat.proc3829889.chain_1784	4
scaffold_9	retained_exon	5286360	5286377	+	asmbl_54007	none	STRG.11103.2,blat.proc3829875.chain_3574,blat.proc3829875.chain_3576	3	STRG.11103.1,STRG.11103.3,blat.proc3829875.chain_3571,blat.proc3829875.chain_3572	4
scaffold_5	retained_exon	10183252	10183263	-	asmbl_45699	none	blat.proc3829889.chain_2400	1	STRG.6308.1	1
scaffold_15	spliced_intron	12421366	12421557	+	asmbl_14501,asmbl_14504,asmbl_14505	none	STRG.18687.1,blat.proc3829879.chain_3268,blat.proc3829879.chain_3270,blat.proc3829879.chain_3271	4	blat.proc3829879.chain_3272,blat.proc3829879.chain_3273	2
scaffold_13	alternate_exon	15637931	15638003	+	asmbl_11502	none	STRG.16594.3	1	STRG.16594.1,blat.proc3829879.chain_1348	2
scaffold_25	retained_exon	8668702	8668797	+	asmbl_33736	none	STRG.27672.3,blat.proc3829885.chain_684	2	STRG.27672.1,blat.proc3829885.chain_683	2
scaffold_1	ends_in_intron	11175147	11175147	+	asmbl_2075	none	blat.proc3829871.chain_814	1	STRG.743.1,STRG.743.2,STRG.743.3,STRG.743.4,STRG.743.5,blat.proc3829871.chain_815,blat.proc3829871.chain_818,blat.proc3829871.chain_820,blat.proc3829871.chain_821,blat.proc3829871.chain_824,blat.proc3829871.chain_825	11
scaffold_26	alternate_exon	3981192	3982890	-	asmbl_34798	none	STRG.28074.1,blat.proc3829901.chain_1316	2	STRG.28074.2,Trinity_GG_32744_c1_g1_i1,blat.proc3829901.chain_1317	3
scaffold_1	skipped_exon	3285767	3287424	+	asmbl_1589	none	STRG.204.2	1	STRG.204.1,STRG.204.3,blat.proc3829871.chain_252,blat.proc3829871.chain_253	4
scaffold_6	retained_intron	8172023	8172117	-	asmbl_48471,asmbl_48472,asmbl_48473,asmbl_48474,asmbl_48480	none	Trinity_GG_21366_c0_g1_i6,blat.proc3829889.chain_3718,blat.proc3829889.chain_3724,blat.proc3829889.chain_3725	4	STRG.7691.1,STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3715,blat.proc3829889.chain_3716	5
scaffold_28	alternate_exon	5574496	5575492	+	asmbl_38287,asmbl_38288,asmbl_38289	none	STRG.29670.1,STRG.29670.2,Trinity_GG_16454_c0_g1_i2,Trinity_GG_16454_c0_g1_i5,Trinity_GG_16454_c0_g1_i6,blat.proc3829885.chain_2794,blat.proc3829885.chain_2796,blat.proc3829885.chain_2797	8	STRG.29670.3,Trinity_GG_16454_c0_g1_i4,blat.proc3829885.chain_2793	3
scaffold_1	spliced_intron	1608805	1609003	+	asmbl_1494,asmbl_1498	none	STRG.102.1,Trinity_GG_85_c0_g1_i1,Trinity_GG_85_c0_g1_i6,blat.proc3829871.chain_145,blat.proc3829871.chain_146	5	Trinity_GG_85_c0_g1_i2,Trinity_GG_85_c0_g1_i3,Trinity_GG_85_c0_g1_i5,blat.proc3829871.chain_143,blat.proc3829871.chain_144,blat.proc3829871.chain_148	6
scaffold_20	alt_donor	4377198	4377199	+	asmbl_25739	none	STRG.23104.2,blat.proc3829883.chain_240	2	STRG.23104.1,blat.proc3829883.chain_242	2
scaffold_25	alternate_exon	6161047	6161305	+	asmbl_33594	none	STRG.27487.1	1	STRG.27487.4	1
scaffold_9	alt_acceptor	12493864	12493865	-	asmbl_55343	none	STRG.11560.1,blat.proc3829891.chain_3645	2	STRG.11560.2	1
scaffold_14	alt_acceptor	9071433	9071434	+	asmbl_12251	none	STRG.17304.2,blat.proc3829879.chain_2037	2	STRG.17304.1,blat.proc3829879.chain_2036	2
scaffold_12	alt_acceptor	10206001	10206002	+	asmbl_8881	none	STRG.14984.1,blat.proc3829877.chain_3511	2	STRG.14984.2	1
scaffold_27	alt_acceptor	6266991	6266992	-	asmbl_37006	none	STRG.28997.1,blat.proc3829901.chain_2157	2	STRG.28997.2	1
scaffold_27	starts_in_intron	9119669	9119669	+	asmbl_36463	none	STRG.29141.2	1	STRG.29141.1	1
scaffold_24	spliced_intron	9952112	9952301	-	asmbl_33146,asmbl_33148,asmbl_33150,asmbl_33152	none	STRG.26947.1,STRG.26947.4,Trinity_GG_32087_c0_g1_i5,blat.proc3829901.chain_249,blat.proc3829901.chain_250	5	STRG.26947.3,STRG.26947.8,Trinity_GG_32087_c0_g1_i6,blat.proc3829901.chain_248	4
scaffold_3	retained_intron	1089700	1089735	+	asmbl_39787	none	STRG.2937.2	1	STRG.2937.1,STRG.2937.3,blat.proc3829871.chain_3056	3
scaffold_5	alt_donor	938690	938691	-	asmbl_45184	none	STRG.5631.1,blat.proc3829889.chain_1685	2	STRG.5631.2	1
scaffold_4	ends_in_intron	8079189	8079189	-	asmbl_41473	none	blat.proc3829889.chain_725	1	STRG.4624.1,blat.proc3829889.chain_726	2
scaffold_25	alt_acceptor	7735301	7735302	+	asmbl_33672	none	STRG.27579.2	1	STRG.27579.1,blat.proc3829885.chain_552	2
scaffold_20	spliced_intron	10384363	10384687	+	asmbl_26108	none	Trinity_GG_12979_c0_g1_i5,blat.proc3829883.chain_592	2	blat.proc3829883.chain_590	1
scaffold_11	alt_donor	13683113	13683114	+	asmbl_6049	none	STRG.14212.2	1	STRG.14212.1,blat.proc3829877.chain_2697	2
scaffold_12	alt_donor	14283975	14283976	+	asmbl_9055	none	STRG.15247.1,blat.proc3829877.chain_3710	2	blat.proc3829877.chain_3709	1
scaffold_10	alt_donor	8917894	8917895	+	asmbl_4620	none	blat.proc3829877.chain_1157	1	STRG.12631.2,blat.proc3829877.chain_1154	2
scaffold_28	retained_intron	8030132	8030254	+	asmbl_38412	none	Trinity_GG_16531_c0_g1_i1	1	STRG.29852.2	1
scaffold_5	alt_acceptor	18560841	18560842	+	asmbl_44920,asmbl_44926	none	STRG.6978.2,STRG.6978.3,blat.proc3829873.chain_3150	3	STRG.6978.1,STRG.6978.4,Trinity_GG_3847_c0_g1_i2,Trinity_GG_3847_c0_g1_i8,blat.proc3829873.chain_3146,blat.proc3829873.chain_3147,blat.proc3829873.chain_3148	7
scaffold_1	retained_intron	170665	170776	+	asmbl_1401	none	Trinity_GG_21_c0_g1_i2,blat.proc3829871.chain_34	2	STRG.14.1,Trinity_GG_21_c0_g1_i1,blat.proc3829871.chain_33	3
scaffold_10	spliced_intron	6671059	6671455	-	asmbl_3405	none	blat.proc3829893.chain_1032	1	STRG.12494.6,blat.proc3829893.chain_1029	2
scaffold_27	alt_donor	6258393	6258394	+	asmbl_36351,asmbl_36352,asmbl_36353	none	STRG.28995.3,blat.proc3829885.chain_2095,blat.proc3829885.chain_2096	3	STRG.28995.2,blat.proc3829885.chain_2097	2
scaffold_11	alternate_exon	1952254	1952313	+	asmbl_5306	none	blat.proc3829877.chain_1829	1	STRG.13339.1,blat.proc3829877.chain_1828	2
scaffold_13	starts_in_intron	7176104	7176104	-	asmbl_9814	none	Trinity_GG_26018_c0_g1_i1,blat.proc3829895.chain_778	2	STRG.15997.1,blat.proc3829895.chain_779	2
scaffold_1	alt_acceptor	12049598	12049599	-	asmbl_690,asmbl_691	none	STRG.819.1,STRG.819.2	2	STRG.819.3,STRG.819.4	2
scaffold_14	alt_donor	6277328	6277329	-	asmbl_13096,asmbl_13097,asmbl_13100	none	STRG.17065.3,STRG.17065.4,blat.proc3829895.chain_1815,blat.proc3829895.chain_1816	4	STRG.17065.1,STRG.17065.2,blat.proc3829895.chain_1814,blat.proc3829895.chain_1817	4
scaffold_2	starts_in_intron	14535103	14535103	+	asmbl_24975	none	STRG.2452.3	1	STRG.2452.1,STRG.2452.2,blat.proc3829871.chain_2647,blat.proc3829871.chain_2648	4
scaffold_7	starts_in_intron	18958516	18958516	-	asmbl_50328	none	blat.proc3829891.chain_1931	1	STRG.9687.1,blat.proc3829891.chain_1930	2
scaffold_15	retained_exon	1961658	1961770	+	asmbl_13982	none	STRG.17971.2	1	STRG.17971.1	1
scaffold_13	ends_in_intron	12459934	12459934	-	asmbl_10103,asmbl_10104	none	STRG.16359.3,blat.proc3829895.chain_1062,blat.proc3829895.chain_1063	3	STRG.16359.2	1
scaffold_13	retained_intron	517905	518487	+	asmbl_10457	none	STRG.15434.1,blat.proc3829879.chain_114	2	STRG.15434.2,blat.proc3829879.chain_115,blat.proc3829879.chain_116	3
scaffold_28	ends_in_intron	7359962	7359962	+	asmbl_38363	none	blat.proc3829885.chain_2872	1	STRG.29785.1,blat.proc3829885.chain_2874	2
scaffold_23	retained_intron	10131332	10131437	-	asmbl_31839	none	STRG.26199.1,blat.proc3829899.chain_3269	2	STRG.26199.2	1
scaffold_3	spliced_intron	9515750	9516729	+	asmbl_40184,asmbl_40185,asmbl_40187	none	STRG.3434.1,Trinity_GG_1959_c0_g1_i1,Trinity_GG_1959_c0_g1_i3,blat.proc3829871.chain_3637,blat.proc3829871.chain_3639,blat.proc3829871.chain_3641	6	STRG.3434.2,Trinity_GG_1959_c1_g1_i1,blat.proc3829871.chain_3642	3
scaffold_23	retained_intron	9425520	9425631	+	asmbl_31090	none	STRG.26145.1,Trinity_GG_14454_c0_g1_i1,blat.proc3829883.chain_3058	3	STRG.26145.2,STRG.26145.3	2
scaffold_11	ends_in_intron	9079106	9079106	+	asmbl_5819	none	Trinity_GG_7684_c0_g1_i1,blat.proc3829877.chain_2433	2	STRG.13921.1,Trinity_GG_7684_c0_g1_i2,blat.proc3829877.chain_2432	3
scaffold_7	retained_exon	8774004	8774090	+	asmbl_50936	none	STRG.9107.1	1	STRG.9107.2,STRG.9107.3	2
scaffold_5	spliced_intron	16018359	16018649	-	asmbl_46120	none	STRG.6778.1,blat.proc3829889.chain_2849	2	STRG.6778.2,Trinity_GG_20823_c0_g1_i4,blat.proc3829889.chain_2846	3
scaffold_18	skipped_exon	6901687	6902245	+	asmbl_20721	none	Trinity_GG_11804_c0_g1_i2,blat.proc3829881.chain_2344	2	STRG.21380.1,blat.proc3829881.chain_2343	2
scaffold_13	retained_exon	9558209	9558300	+	asmbl_11197	none	STRG.16205.1,blat.proc3829879.chain_947	2	STRG.16205.2,blat.proc3829879.chain_946	2
scaffold_2	starts_in_intron	14278101	14278101	+	asmbl_24931	none	blat.proc3829871.chain_2546	1	STRG.2425.1,STRG.2425.2,STRG.2425.3,STRG.2425.4,blat.proc3829871.chain_2541,blat.proc3829871.chain_2542,blat.proc3829871.chain_2543,blat.proc3829871.chain_2545	8
scaffold_16	retained_intron	2172434	2173338	+	asmbl_16899,asmbl_16903,asmbl_16905	none	STRG.19105.2,Trinity_GG_10487_c0_g1_i8,blat.proc3829879.chain_3733,blat.proc3829879.chain_3735,blat.proc3829879.chain_3736	5	blat.proc3829879.chain_3738	1
scaffold_26	retained_intron	5043449	5043773	+	asmbl_35471	none	Trinity_GG_14060_c0_g1_i3,blat.proc3829883.chain_2397	2	STRG.28206.1,blat.proc3829883.chain_2394,blat.proc3829883.chain_2396,blat.proc3829885.chain_1156,blat.proc3829885.chain_1157,blat.proc3829885.chain_1158,blat.proc3829885.chain_1159,blat.proc3829885.chain_1163,blat.proc3829885.chain_1164,blat.proc3829885.chain_1167,blat.proc3829885.chain_1168,blat.proc3829885.chain_1169	12
scaffold_3	spliced_intron	4257051	4257133	+	asmbl_39945	none	STRG.3116.2	1	STRG.3116.1,Trinity_GG_1763_c0_g1_i1	2
scaffold_6	alt_acceptor	12991556	12991557	-	asmbl_48794,asmbl_48796	none	STRG.8061.1,blat.proc3829891.chain_260,blat.proc3829891.chain_272	3	STRG.8061.4	1
scaffold_10	alt_donor	13002218	13002219	+	asmbl_4845	none	STRG.12901.2,blat.proc3829877.chain_1480	2	STRG.12901.3,blat.proc3829877.chain_1477	2
scaffold_3	alt_donor	17843965	17843966	+	asmbl_40667,asmbl_40668	none	STRG.4008.3,STRG.4008.4	2	STRG.4008.1,STRG.4008.2,blat.proc3829873.chain_341,blat.proc3829873.chain_342,blat.proc3829873.chain_343	5
scaffold_20	alt_acceptor	11733009	11733010	+	asmbl_26245	none	STRG.23668.1,blat.proc3829883.chain_823	2	STRG.23668.2	1
scaffold_12	starts_in_intron	144921	144921	+	asmbl_8405	none	Trinity_GG_7955_c1_g1_i1,blat.proc3829877.chain_2912	2	STRG.14411.1,Trinity_GG_7955_c0_g1_i1,blat.proc3829877.chain_2910	3
scaffold_21	starts_in_intron	6925013	6925013	-	asmbl_27781	none	blat.proc3829899.chain_1248	1	STRG.24206.1	1
scaffold_19	retained_exon	13268055	13268107	-	asmbl_21857	none	STRG.22634.1,blat.proc3829897.chain_3419	2	STRG.22634.2,blat.proc3829897.chain_3418	2
scaffold_7	retained_exon	18685553	18685708	-	asmbl_50310	none	Trinity_GG_22426_c3_g1_i3,Trinity_GG_22426_c3_g1_i5,blat.proc3829891.chain_1863	3	Trinity_GG_22426_c3_g1_i4	1
scaffold_18	ends_in_intron	1617505	1617505	+	asmbl_20395	none	blat.proc3829881.chain_1888	1	STRG.21039.1	1
scaffold_8	retained_intron	11850678	11850826	+	asmbl_52271,asmbl_52272,asmbl_52273	none	blat.proc3829875.chain_2966,blat.proc3829875.chain_2971,blat.proc3829875.chain_2980	3	STRG.10382.2,STRG.10382.3,blat.proc3829875.chain_2967,blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2975,blat.proc3829875.chain_2976,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978,blat.proc3829875.chain_2979	13
scaffold_5	retained_intron	14569299	14569509	-	asmbl_45979	none	blat.proc3829889.chain_2695	1	STRG.6648.1,STRG.6648.2,blat.proc3829889.chain_2698	3
scaffold_24	alt_donor	8747124	8747125	+	asmbl_32449	none	STRG.26872.3	1	STRG.26872.1,Trinity_GG_14810_c0_g1_i2,blat.proc3829883.chain_3681	3
scaffold_8	ends_in_intron	13136286	13136286	-	asmbl_53270	none	Trinity_GG_22847_c2_g1_i1,blat.proc3829891.chain_2644	2	STRG.10481.1,STRG.10481.2,blat.proc3829891.chain_2640,blat.proc3829891.chain_2641,blat.proc3829891.chain_2642	5
scaffold_18	alternate_exon	1921676	1921715	+	asmbl_20419,asmbl_20420	none	STRG.21073.1,STRG.21073.2	2	STRG.21073.3,blat.proc3829881.chain_1933	2
scaffold_16	alt_donor	9144615	9144616	+	asmbl_17258,asmbl_17259,asmbl_17260,asmbl_17261	none	STRG.19502.1,STRG.19502.2,blat.proc3829881.chain_392,blat.proc3829881.chain_393,blat.proc3829881.chain_396	5	STRG.19502.3,blat.proc3829881.chain_395,blat.proc3829881.chain_397	3
scaffold_8	alt_acceptor	9155634	9155635	-	asmbl_53010	none	STRG.10167.1,blat.proc3829891.chain_2286	2	Trinity_GG_22667_c0_g1_i2,blat.proc3829891.chain_2287	2
scaffold_2	starts_in_intron	18520640	18520640	-	asmbl_23803	none	blat.proc3829887.chain_2503	1	STRG.2719.1	1
scaffold_1	alt_donor	16498293	16498294	-	asmbl_999	none	STRG.1153.1,blat.proc3829887.chain_1045	2	STRG.1153.2,blat.proc3829887.chain_1044	2
scaffold_25	retained_intron	4289292	4289367	+	asmbl_33480	none	STRG.27341.1,blat.proc3829885.chain_273	2	STRG.27341.2	1
scaffold_19	starts_in_intron	6374138	6374138	-	asmbl_21413,asmbl_21414	none	STRG.22145.2,blat.proc3829897.chain_2864	2	STRG.22145.1,blat.proc3829897.chain_2863	2
scaffold_23	starts_in_intron	4076002	4076002	+	asmbl_30779	none	Trinity_GG_14234_c0_g1_i2,blat.proc3829883.chain_2680	2	STRG.25797.1,Trinity_GG_14234_c0_g1_i1,blat.proc3829883.chain_2679	3
scaffold_5	retained_intron	10852168	10852260	+	asmbl_44368	none	blat.proc3829873.chain_2512	1	STRG.6350.1,STRG.6350.3,STRG.6350.4,blat.proc3829873.chain_2513,blat.proc3829873.chain_2514,blat.proc3829873.chain_2515,blat.proc3829873.chain_2516	7
scaffold_5	spliced_intron	4696384	4696509	+	asmbl_43950	none	STRG.5917.3	1	STRG.5917.1	1
scaffold_8	ends_in_intron	4899398	4899398	+	asmbl_51864	none	blat.proc3829875.chain_2363	1	STRG.9952.1,STRG.9952.2,blat.proc3829875.chain_2364,blat.proc3829875.chain_2365,blat.proc3829875.chain_2366	5
scaffold_9	alt_donor	5472589	5472590	+	asmbl_54031	none	STRG.11113.2	1	STRG.11113.1,Trinity_GG_6198_c0_g1_i3,blat.proc3829875.chain_3611	3
scaffold_19	alt_acceptor	6376932	6376933	-	asmbl_21416	none	blat.proc3829897.chain_2854	1	STRG.22149.1,blat.proc3829897.chain_2853	2
scaffold_5	alt_acceptor	823367	823368	+	asmbl_43765,asmbl_43766	none	STRG.5632.1,STRG.5632.2	2	STRG.5632.3	1
scaffold_22	skipped_exon	744120	745388	-	asmbl_29893	none	STRG.24710.2	1	STRG.24710.3,blat.proc3829899.chain_1766	2
scaffold_9	starts_in_intron	12223133	12223133	-	asmbl_55326	none	STRG.11534.1,blat.proc3829891.chain_3658	2	blat.proc3829891.chain_3659	1
scaffold_17	alt_donor	1123911	1123912	+	asmbl_17718,asmbl_17721	none	STRG.19947.1,blat.proc3829881.chain_780,blat.proc3829881.chain_783	3	STRG.19947.2,blat.proc3829881.chain_781	2
scaffold_9	alt_donor	12012157	12012158	+	asmbl_54390	none	STRG.11515.1	1	STRG.11515.2	1
scaffold_7	retained_intron	1235897	1236200	+	asmbl_50468,asmbl_50469,asmbl_50470,asmbl_50474,asmbl_50479,asmbl_50480	none	STRG.8627.2,STRG.8627.5,STRG.8627.6,Trinity_GG_4740_c0_g1_i13,Trinity_GG_4740_c0_g1_i14,Trinity_GG_4740_c0_g1_i16,blat.proc3829875.chain_1042,blat.proc3829875.chain_1043,blat.proc3829875.chain_1044,blat.proc3829875.chain_1045,blat.proc3829875.chain_1048,blat.proc3829875.chain_1049	12	STRG.8627.9	1
scaffold_11	skipped_exon	11936610	11938201	-	asmbl_7020	none	STRG.14160.1	1	STRG.14160.2,STRG.14160.3,STRG.14160.4,STRG.14160.5	4
scaffold_23	skipped_exon	10698860	10701583	+	asmbl_31161	none	STRG.26237.1	1	STRG.26237.2	1
scaffold_21	alt_acceptor	9930176	9930177	-	asmbl_28011,asmbl_28013,asmbl_28014,asmbl_28016	none	STRG.24446.1,STRG.24446.5,STRG.24446.6,blat.proc3829899.chain_1512,blat.proc3829899.chain_1513	5	STRG.24446.4	1
scaffold_1	alternate_exon	20988651	20988977	+	asmbl_2659	none	STRG.1431.3,Trinity_GG_838_c0_g1_i4,blat.proc3829871.chain_1500	3	blat.proc3829871.chain_1501	1
scaffold_5	starts_in_intron	8405075	8405075	+	asmbl_44208	none	Trinity_GG_3374_c0_g1_i2,blat.proc3829873.chain_2323	2	STRG.6176.1,blat.proc3829873.chain_2324	2
scaffold_1	starts_in_intron	7289659	7289659	+	asmbl_1893	none	STRG.526.4	1	STRG.526.1,STRG.526.2,STRG.526.3,Trinity_GG_300_c0_g1_i1,Trinity_GG_300_c0_g1_i4,blat.proc3829871.chain_530,blat.proc3829871.chain_531	7
scaffold_3	alt_acceptor	1032790	1032791	+	asmbl_39779	none	STRG.2926.1,blat.proc3829871.chain_3092	2	STRG.2926.2	1
scaffold_5	spliced_intron	12840721	12841915	+	asmbl_44496	none	STRG.6508.1,Trinity_GG_3545_c0_g1_i3,blat.proc3829873.chain_2643	3	STRG.6508.2,STRG.6508.3,blat.proc3829873.chain_2644	3
scaffold_16	alt_donor	9338076	9338077	-	asmbl_16454	none	STRG.19524.2,Trinity_GG_27964_c1_g1_i1,blat.proc3829897.chain_533	3	STRG.19524.1,Trinity_GG_27964_c1_g1_i2,blat.proc3829897.chain_532	3
scaffold_14	alt_acceptor	12626471	12626472	-	asmbl_13572	none	blat.proc3829895.chain_2326	1	STRG.17566.1,STRG.17566.2,blat.proc3829895.chain_2327,blat.proc3829895.chain_2329,blat.proc3829895.chain_2330,blat.proc3829895.chain_2331,blat.proc3829895.chain_2332	7
scaffold_3	spliced_intron	17362094	17362259	-	asmbl_39500	none	blat.proc3829889.chain_29	1	STRG.3972.2,STRG.3972.3,STRG.3972.4,Trinity_GG_19202_c0_g1_i17,blat.proc3829889.chain_23,blat.proc3829889.chain_24,blat.proc3829889.chain_26,blat.proc3829889.chain_27,blat.proc3829889.chain_28	9
scaffold_2	retained_intron	950718	951105	+	asmbl_24186,asmbl_24191	none	STRG.1574.4,blat.proc3829871.chain_1647	2	STRG.1574.1,STRG.1574.2,STRG.1574.3	3
scaffold_9	retained_intron	3672539	3672630	-	asmbl_54886	none	blat.proc3829891.chain_3082	1	STRG.10971.1,STRG.10971.3,blat.proc3829891.chain_3078,blat.proc3829891.chain_3084,blat.proc3829891.chain_3085	5
scaffold_24	alt_acceptor	6167640	6167641	-	asmbl_32926	none	STRG.26658.3,blat.proc3829899.chain_3659	2	STRG.26658.2,blat.proc3829899.chain_3658	2
scaffold_18	spliced_intron	8883548	8883630	-	asmbl_20070	none	STRG.21540.3,Trinity_GG_29008_c0_g1_i3,blat.proc3829897.chain_2285	3	STRG.21540.4,Trinity_GG_29008_c0_g1_i4,blat.proc3829897.chain_2286	3
scaffold_21	spliced_intron	6479488	6479867	+	asmbl_28668	none	blat.proc3829883.chain_1283	1	STRG.24154.1,Trinity_GG_13375_c0_g1_i2,blat.proc3829883.chain_1282	3
scaffold_8	alt_donor	12693248	12693249	+	asmbl_52320,asmbl_52321	none	STRG.10436.1,STRG.10436.2	2	blat.proc3829875.chain_2945,blat.proc3829875.chain_2946,blat.proc3829875.chain_2948	3
scaffold_13	ends_in_intron	4601822	4601822	-	asmbl_9609	none	Trinity_GG_25880_c0_g1_i6,blat.proc3829895.chain_528	2	STRG.15781.1,STRG.15781.2,blat.proc3829895.chain_531,blat.proc3829895.chain_533	4
scaffold_9	alt_donor	12454087	12454088	+	asmbl_54415	none	STRG.11551.2,blat.proc3829877.chain_311	2	STRG.11551.1,blat.proc3829877.chain_310	2
scaffold_8	starts_in_intron	6114906	6114906	+	asmbl_51927	none	Trinity_GG_5582_c2_g1_i1,blat.proc3829875.chain_2531	2	STRG.10007.2,Trinity_GG_5582_c0_g1_i5,blat.proc3829875.chain_2522	3
scaffold_19	retained_intron	5155289	5155500	+	asmbl_22159,asmbl_22160	none	STRG.22072.2,blat.proc3829881.chain_3012	2	STRG.22072.4,blat.proc3829881.chain_3011	2
scaffold_12	alt_acceptor	2768472	2768473	+	asmbl_8487	none	STRG.14511.1,blat.proc3829877.chain_2978	2	blat.proc3829877.chain_2977	1
scaffold_21	retained_exon	8131428	8131454	-	asmbl_27910,asmbl_27912,asmbl_27914	none	STRG.24334.5,blat.proc3829899.chain_1383,blat.proc3829899.chain_1385,blat.proc3829899.chain_1387	4	blat.proc3829899.chain_1382	1
scaffold_19	starts_in_intron	5636878	5636878	-	asmbl_21385	none	Trinity_GG_29368_c1_g1_i7,blat.proc3829897.chain_2912	2	blat.proc3829897.chain_2911,blat.proc3829897.chain_2913	2
scaffold_15	retained_exon	6957077	6957098	-	asmbl_15289	none	STRG.18291.2,blat.proc3829895.chain_3052	2	STRG.18291.1,STRG.18291.3,blat.proc3829895.chain_3051,blat.proc3829895.chain_3053,blat.proc3829895.chain_3054	5
scaffold_13	ends_in_intron	7501258	7501258	-	asmbl_9849	none	Trinity_GG_26030_c0_g1_i2,blat.proc3829895.chain_814	2	STRG.16034.1,STRG.16034.2,STRG.16034.3,STRG.16034.4,STRG.16034.5,blat.proc3829895.chain_815,blat.proc3829895.chain_817,blat.proc3829895.chain_818,blat.proc3829895.chain_823	9
scaffold_15	alt_donor	4117723	4117724	-	asmbl_15135	none	STRG.18141.4	1	STRG.18141.2,blat.proc3829895.chain_2826	2
scaffold_6	ends_in_intron	12654805	12654805	+	asmbl_47366,asmbl_47367	none	blat.proc3829875.chain_365,blat.proc3829875.chain_367	2	STRG.8019.2	1
scaffold_1	spliced_intron	14357027	14357107	+	asmbl_2365,asmbl_2366,asmbl_2368	none	STRG.1032.1,STRG.1032.2,blat.proc3829871.chain_1120,blat.proc3829871.chain_1122,blat.proc3829871.chain_1124	5	blat.proc3829871.chain_1121	1
scaffold_25	retained_intron	9119403	9119661	+	asmbl_33777	none	blat.proc3829885.chain_764,blat.proc3829885.chain_765	2	STRG.27709.3	1
scaffold_5	alt_donor	5064080	5064081	-	asmbl_45414	none	STRG.5956.1,blat.proc3829889.chain_2049	2	STRG.5956.2,Trinity_GG_20370_c0_g1_i3,blat.proc3829889.chain_2047	3
scaffold_10	alt_donor	8321124	8321125	-	asmbl_3490	none	STRG.12583.2	1	STRG.12583.1	1
scaffold_4	skipped_exon	3237335	3238369	-	asmbl_41167	none	STRG.4247.4	1	STRG.4247.2,blat.proc3829889.chain_367	2
scaffold_16	alternate_exon	13206048	13216830	+	asmbl_17455	none	STRG.19770.2,blat.proc3829881.chain_595	2	blat.proc3829881.chain_600	1
scaffold_24	retained_intron	7784554	7784674	-	asmbl_33052	none	blat.proc3829901.chain_127	1	blat.proc3829901.chain_125,blat.proc3829901.chain_126	2
scaffold_8	spliced_intron	10245429	10245640	+	asmbl_52151,asmbl_52152,asmbl_52154	none	STRG.10282.1,STRG.10282.2,STRG.10282.4,blat.proc3829875.chain_2791,blat.proc3829875.chain_2792,blat.proc3829875.chain_2793	6	blat.proc3829875.chain_2790	1
scaffold_7	spliced_intron	11851482	11851796	+	asmbl_51072	none	STRG.9296.3,blat.proc3829875.chain_1751	2	STRG.9296.2,Trinity_GG_5157_c0_g1_i2,blat.proc3829875.chain_1752	3
scaffold_1	starts_in_intron	5206873	5206873	+	asmbl_1709,asmbl_1710,asmbl_1711,asmbl_1712,asmbl_1713	none	blat.proc3829871.chain_390,blat.proc3829871.chain_391,blat.proc3829871.chain_393,blat.proc3829871.chain_394,blat.proc3829871.chain_395	5	STRG.323.2,blat.proc3829871.chain_396,blat.proc3829871.chain_397,blat.proc3829871.chain_398	4
scaffold_20	alternate_exon	11480895	11482530	+	asmbl_26206	none	STRG.23639.5,Trinity_GG_13053_c0_g2_i1,blat.proc3829883.chain_718	3	STRG.23639.3,blat.proc3829883.chain_715	2
scaffold_8	ends_in_intron	6317367	6317367	-	asmbl_52869	none	Trinity_GG_22617_c0_g1_i4,blat.proc3829891.chain_2196	2	STRG.10031.1,blat.proc3829891.chain_2198	2
scaffold_6	alternate_exon	886163	886855	-	asmbl_48031	none	STRG.7153.3	1	blat.proc3829889.chain_3164	1
scaffold_6	alt_acceptor	17799090	17799091	-	asmbl_49133	none	STRG.8455.2,blat.proc3829891.chain_711	2	STRG.8455.1,blat.proc3829891.chain_712	2
scaffold_9	ends_in_intron	5549077	5549077	-	asmbl_54973	none	Trinity_GG_23158_c1_g1_i1,blat.proc3829891.chain_3231	2	STRG.11124.1,STRG.11124.2,STRG.11124.3,blat.proc3829891.chain_3225,blat.proc3829891.chain_3226,blat.proc3829891.chain_3227	6
scaffold_359	alt_donor	2444	2445	+	asmbl_40999	none	STRG.30277.1	1	blat.proc3829885.chain_3321	1
scaffold_5	spliced_intron	14262431	14262734	+	asmbl_44582	none	blat.proc3829873.chain_2765	1	STRG.6629.3,blat.proc3829873.chain_2762,blat.proc3829873.chain_2771	3
scaffold_5	spliced_intron	14568812	14568989	-	asmbl_45978,asmbl_45979,asmbl_45982	none	STRG.6648.1,STRG.6648.2,blat.proc3829889.chain_2695,blat.proc3829889.chain_2698	4	blat.proc3829889.chain_2696	1
scaffold_11	spliced_intron	11783168	11784314	+	asmbl_5961,asmbl_5963,asmbl_5965	none	STRG.14087.1,STRG.14087.2,STRG.14087.5	3	STRG.14087.4	1
scaffold_11	alt_donor	172192	172193	+	asmbl_5216,asmbl_5218,asmbl_5219,asmbl_5220,asmbl_5222	none	STRG.13231.1,STRG.13231.2,STRG.13231.3,STRG.13231.4,blat.proc3829877.chain_1757	5	STRG.13231.5	1
scaffold_9	retained_exon	645134	645220	+	asmbl_53761	none	STRG.10785.1,blat.proc3829875.chain_3238	2	STRG.10785.2	1
scaffold_20	spliced_intron	11142153	11142251	+	asmbl_26170	none	STRG.23625.2,Trinity_GG_13048_c0_g1_i4,blat.proc3829883.chain_696	3	STRG.23625.1,Trinity_GG_13048_c0_g1_i3,Trinity_GG_13048_c0_g1_i5,blat.proc3829883.chain_697,blat.proc3829883.chain_698	5
scaffold_3	ends_in_intron	16001243	16001243	-	asmbl_39416	none	Trinity_GG_19145_c1_g1_i1,blat.proc3829887.chain_3668	2	STRG.3873.1,blat.proc3829887.chain_3666	2
scaffold_10	alternate_exon	16252344	16252380	+	asmbl_4981,asmbl_4983	none	STRG.13097.1,Trinity_GG_7185_c0_g1_i2,blat.proc3829877.chain_1597	3	STRG.13097.2,STRG.13097.3,blat.proc3829877.chain_1598	3
scaffold_16	alt_acceptor	14679102	14679103	+	asmbl_17505	none	blat.proc3829881.chain_707	1	STRG.19857.1,STRG.19857.2,blat.proc3829881.chain_708	3
scaffold_8	retained_intron	10601114	10601193	-	asmbl_53112	none	Trinity_GG_22735_c0_g1_i2,blat.proc3829891.chain_2431	2	STRG.10288.1,blat.proc3829891.chain_2432	2
scaffold_10	alt_acceptor	13883170	13883171	+	asmbl_4898,asmbl_4899	none	STRG.12962.1,blat.proc3829877.chain_1540,blat.proc3829877.chain_1541	3	STRG.12962.2,Trinity_GG_7145_c0_g1_i4,blat.proc3829877.chain_1542	3
scaffold_10	spliced_intron	5010843	5010929	-	asmbl_3251	none	blat.proc3829893.chain_749	1	STRG.12318.1,blat.proc3829893.chain_746	2
scaffold_13	alt_donor	8137594	8137595	+	asmbl_11096	none	STRG.16084.2	1	STRG.16084.1,Trinity_GG_8853_c0_g1_i1,blat.proc3829879.chain_841	3
scaffold_14	starts_in_intron	2355549	2355549	+	asmbl_11835	none	Trinity_GG_9275_c2_g1_i1,blat.proc3829879.chain_1576	2	STRG.16834.1,blat.proc3829879.chain_1574,blat.proc3829879.chain_1575	3
scaffold_3	starts_in_intron	17836590	17836590	+	asmbl_40659	none	STRG.3994.3,blat.proc3829873.chain_399	2	STRG.3994.1,STRG.3994.2,blat.proc3829873.chain_397,blat.proc3829873.chain_398,blat.proc3829873.chain_400	5
scaffold_3	alternate_exon	1656572	1661859	-	asmbl_38681	none	blat.proc3829887.chain_2779	1	STRG.2989.2,blat.proc3829887.chain_2778	2
scaffold_25	retained_intron	4810572	4810690	+	asmbl_33532	none	blat.proc3829885.chain_374	1	STRG.27400.1,Trinity_GG_15078_c0_g1_i6,blat.proc3829885.chain_375	3
scaffold_15	alt_acceptor	14663824	14663825	+	asmbl_14644	none	STRG.18874.3	1	STRG.18874.2,Trinity_GG_10354_c1_g1_i1,blat.proc3829879.chain_3461	3
scaffold_9	skipped_exon	9531268	9532064	-	asmbl_55156,asmbl_55157,asmbl_55158	none	STRG.11302.2,blat.proc3829891.chain_3448,blat.proc3829891.chain_3450	3	STRG.11302.1,blat.proc3829891.chain_3449	2
scaffold_20	alternate_exon	8167820	8167954	+	asmbl_25905	none	STRG.23350.3	1	STRG.23350.1,STRG.23350.2,Trinity_GG_12869_c0_g1_i2,blat.proc3829883.chain_427	4
scaffold_14	alt_acceptor	15928040	15928041	-	asmbl_13746	none	STRG.17822.4	1	STRG.17822.3	1
scaffold_11	starts_in_intron	8432385	8432385	+	asmbl_5734	none	Trinity_GG_7631_c0_g2_i3,blat.proc3829877.chain_2330	2	STRG.13849.1,STRG.13849.3,Trinity_GG_7631_c0_g2_i1,Trinity_GG_7631_c0_g2_i4,blat.proc3829877.chain_2329,blat.proc3829877.chain_2331	6
scaffold_14	spliced_intron	9272764	9273523	-	asmbl_13343,asmbl_13345,asmbl_13346,asmbl_13348	none	STRG.17323.1,STRG.17323.2,blat.proc3829895.chain_1995,blat.proc3829895.chain_1996,blat.proc3829895.chain_1997	5	blat.proc3829895.chain_1994,blat.proc3829895.chain_1998	2
scaffold_2	spliced_intron	10373407	10373567	-	asmbl_23430	none	blat.proc3829887.chain_2109	1	STRG.2212.1,STRG.2212.2,blat.proc3829887.chain_2110,blat.proc3829887.chain_2111	4
scaffold_8	starts_in_intron	14570851	14570851	+	asmbl_52372,asmbl_52373	none	STRG.10535.3,Trinity_GG_5873_c0_g1_i7,blat.proc3829875.chain_3058,blat.proc3829875.chain_3059	4	STRG.10535.2	1
scaffold_22	alt_donor	11522789	11522790	+	asmbl_29689	none	STRG.25480.1,Trinity_GG_14036_c1_g1_i1,blat.proc3829883.chain_2358	3	STRG.25480.2,blat.proc3829883.chain_2357	2
scaffold_21	ends_in_intron	707889	707889	-	asmbl_27379,asmbl_27382	none	Trinity_GG_30242_c0_g1_i2,Trinity_GG_30242_c0_g1_i5,blat.proc3829899.chain_815,blat.proc3829899.chain_817	4	STRG.23751.1,STRG.23751.2,Trinity_GG_30242_c0_g1_i4,Trinity_GG_30242_c0_g1_i8,blat.proc3829899.chain_811,blat.proc3829899.chain_812,blat.proc3829899.chain_813,blat.proc3829899.chain_814	8
scaffold_25	spliced_intron	978574	978714	+	asmbl_33350	none	blat.proc3829885.chain_192,blat.proc3829885.chain_194	2	blat.proc3829885.chain_193	1
scaffold_5	alt_acceptor	939420	939421	-	asmbl_45188	none	STRG.5635.3	1	STRG.5635.2	1
scaffold_21	alt_acceptor	9866314	9866315	-	asmbl_28000	none	STRG.24438.2	1	STRG.24438.3	1
scaffold_20	ends_in_intron	4373159	4373159	+	asmbl_25737	none	blat.proc3829883.chain_249	1	STRG.23107.1,STRG.23107.2,blat.proc3829883.chain_248	3
scaffold_20	retained_intron	7473965	7474216	-	asmbl_26835	none	blat.proc3829899.chain_390	1	STRG.23308.1,blat.proc3829899.chain_389,blat.proc3829899.chain_391,blat.proc3829899.chain_393,blat.proc3829899.chain_394,blat.proc3829899.chain_396,blat.proc3829899.chain_399,blat.proc3829899.chain_401	8
scaffold_22	retained_intron	1706545	1706810	-	asmbl_29913	none	blat.proc3829899.chain_1869	1	STRG.24746.1,STRG.24746.2,Trinity_GG_30839_c0_g1_i1,Trinity_GG_30839_c0_g1_i3,blat.proc3829899.chain_1868,blat.proc3829899.chain_1870	6
scaffold_7	starts_in_intron	9846160	9846160	-	asmbl_49895	none	blat.proc3829891.chain_1406	1	STRG.9173.1,blat.proc3829891.chain_1405	2
scaffold_2	alternate_exon	7216791	7217129	+	asmbl_24572	none	STRG.2054.4,Trinity_GG_1174_c0_g1_i3,blat.proc3829871.chain_2146	3	STRG.2054.3,Trinity_GG_1174_c0_g1_i5,Trinity_GG_1174_c0_g1_i8,blat.proc3829871.chain_2148,blat.proc3829871.chain_2151	5
scaffold_24	alt_donor	10479732	10479733	+	asmbl_32564,asmbl_32568	none	STRG.26999.3,blat.proc3829885.chain_115,blat.proc3829885.chain_116	3	blat.proc3829885.chain_114	1
scaffold_13	ends_in_intron	8301544	8301544	+	asmbl_11103	none	blat.proc3829879.chain_866	1	STRG.16108.1,STRG.16108.2,blat.proc3829879.chain_867,blat.proc3829879.chain_868	4
scaffold_20	retained_intron	8292117	8292345	+	asmbl_25914,asmbl_25919	none	STRG.23362.1,Trinity_GG_12893_c0_g1_i4,blat.proc3829883.chain_459,blat.proc3829883.chain_460	4	STRG.23362.2,STRG.23362.3,STRG.23362.4,Trinity_GG_12893_c0_g1_i2,Trinity_GG_12893_c0_g1_i3,blat.proc3829883.chain_458,blat.proc3829883.chain_461	7
scaffold_12	retained_exon	6417131	6417247	+	asmbl_8639,asmbl_8640,asmbl_8642,asmbl_8644	none	STRG.14730.1,STRG.14730.2,STRG.14730.3,blat.proc3829877.chain_3203,blat.proc3829877.chain_3204,blat.proc3829877.chain_3205	6	STRG.14730.4,blat.proc3829877.chain_3201	2
scaffold_11	ends_in_intron	5868480	5868480	-	asmbl_6664	none	blat.proc3829893.chain_2102	1	STRG.13641.2,STRG.13641.3,blat.proc3829893.chain_2103,blat.proc3829893.chain_2104	4
scaffold_10	alternate_exon	13776864	13777124	-	asmbl_3836	none	blat.proc3829893.chain_1503	1	STRG.12968.2	1
scaffold_2	spliced_intron	4578060	4578717	+	asmbl_24379,asmbl_24384,asmbl_24385	none	STRG.1884.2,Trinity_GG_1044_c1_g1_i4,blat.proc3829871.chain_1915,blat.proc3829871.chain_1916,blat.proc3829871.chain_1917	5	STRG.1884.1,Trinity_GG_1044_c1_g1_i3,blat.proc3829871.chain_1914	3
scaffold_12	alt_acceptor	14946374	14946375	-	asmbl_8147	none	STRG.15269.2,Trinity_GG_25558_c0_g1_i2,blat.proc3829893.chain_3715	3	STRG.15269.1,Trinity_GG_25558_c0_g1_i1,Trinity_GG_25558_c0_g1_i3,blat.proc3829893.chain_3716,blat.proc3829893.chain_3717	5
scaffold_22	retained_intron	215344	216306	+	asmbl_29114,asmbl_29116	none	STRG.24661.1,STRG.24661.4,Trinity_GG_13639_c0_g1_i4,blat.proc3829883.chain_1718	4	STRG.24661.2,STRG.24661.3,STRG.24661.5,blat.proc3829883.chain_1716,blat.proc3829883.chain_1717	5
scaffold_16	retained_intron	8088050	8088183	-	asmbl_16408	none	Trinity_GG_27908_c0_g2_i6,blat.proc3829897.chain_448	2	STRG.19441.1,blat.proc3829897.chain_446,blat.proc3829897.chain_447,blat.proc3829897.chain_449	4
scaffold_1	alt_acceptor	4614947	4614948	+	asmbl_1681,asmbl_1683,asmbl_1684	none	STRG.295.2,STRG.295.3,STRG.295.4	3	STRG.295.1,blat.proc3829871.chain_329	2
scaffold_7	retained_exon	9864296	9864325	-	asmbl_49902,asmbl_49905	none	STRG.9178.1,STRG.9178.3,blat.proc3829891.chain_1419	3	blat.proc3829891.chain_1417	1
scaffold_15	ends_in_intron	13971739	13971739	+	asmbl_14607	none	blat.proc3829879.chain_3420	1	STRG.18817.1,Trinity_GG_10330_c0_g1_i1,blat.proc3829879.chain_3419,blat.proc3829879.chain_3421	4
scaffold_1	alt_acceptor	6496620	6496621	-	asmbl_372	none	STRG.443.2	1	STRG.443.1,blat.proc3829887.chain_246	2
scaffold_10	skipped_exon	1290276	1292230	+	asmbl_4208	none	STRG.12009.2	1	STRG.12009.1,blat.proc3829877.chain_668	2
scaffold_10	spliced_intron	13000440	13000630	-	asmbl_3749,asmbl_3750	none	STRG.12900.2,STRG.12900.3,Trinity_GG_24234_c1_g1_i2,blat.proc3829893.chain_1397	4	blat.proc3829893.chain_1395	1
scaffold_19	alt_acceptor	13155142	13155143	-	asmbl_21825	none	blat.proc3829897.chain_3408	1	STRG.22626.1,blat.proc3829897.chain_3409	2
scaffold_9	spliced_intron	6904964	6905103	-	asmbl_55059	none	STRG.11190.1,Trinity_GG_23218_c0_g1_i1,blat.proc3829891.chain_3336	3	Trinity_GG_23218_c0_g1_i4,blat.proc3829891.chain_3338	2
scaffold_11	retained_exon	11943840	11944315	-	asmbl_7019,asmbl_7021,asmbl_7022,asmbl_7023,asmbl_7029	none	STRG.14160.2,STRG.14160.3,STRG.14160.4,STRG.14160.5,STRG.14160.6,blat.proc3829893.chain_2558	6	STRG.14160.1	1
scaffold_13	retained_intron	6396106	6396402	+	asmbl_10907	none	STRG.15914.2,Trinity_GG_8718_c0_g1_i4,Trinity_GG_8718_c0_g1_i6,blat.proc3829879.chain_550,blat.proc3829879.chain_553	5	STRG.15914.3,STRG.15914.4,Trinity_GG_8718_c0_g1_i9,blat.proc3829879.chain_552	4
scaffold_5	retained_intron	16018359	16018649	-	asmbl_46118	none	STRG.6778.2,Trinity_GG_20823_c0_g1_i4,blat.proc3829889.chain_2846	3	STRG.6778.1,blat.proc3829889.chain_2849	2
scaffold_23	retained_intron	2608885	2609300	-	asmbl_31473	none	blat.proc3829899.chain_2844	1	STRG.25709.1,STRG.25709.2,STRG.25709.3,blat.proc3829899.chain_2842,blat.proc3829899.chain_2843,blat.proc3829899.chain_2846	6
scaffold_14	starts_in_intron	364508	364508	-	asmbl_12808	none	blat.proc3829895.chain_1413	1	STRG.16717.1,blat.proc3829895.chain_1412	2
scaffold_9	retained_intron	6904964	6905103	-	asmbl_55061	none	Trinity_GG_23218_c0_g1_i4,blat.proc3829891.chain_3338	2	STRG.11190.1,Trinity_GG_23218_c0_g1_i1,blat.proc3829891.chain_3336	3
scaffold_13	alt_acceptor	5948286	5948287	-	asmbl_9716,asmbl_9717,asmbl_9719	none	STRG.15896.1,STRG.15896.3,blat.proc3829895.chain_637,blat.proc3829895.chain_638	4	STRG.15896.2,STRG.15896.4	2
scaffold_13	ends_in_intron	3085297	3085297	+	asmbl_10643	none	STRG.15600.3,blat.proc3829879.chain_326	2	STRG.15600.1,STRG.15600.2,blat.proc3829879.chain_324,blat.proc3829879.chain_325	4
scaffold_6	alt_donor	168397	168398	-	asmbl_47971	none	STRG.7070.1	1	STRG.7070.2	1
scaffold_14	spliced_intron	6582351	6582780	+	asmbl_12064	none	STRG.17092.2,blat.proc3829879.chain_1796	2	STRG.17092.1,blat.proc3829879.chain_1797	2
scaffold_21	spliced_intron	7367840	7367962	-	asmbl_27823,asmbl_27825	none	STRG.24244.1,blat.proc3829899.chain_1314,blat.proc3829899.chain_1317	3	STRG.24244.2,blat.proc3829899.chain_1315,blat.proc3829899.chain_1316	3
scaffold_10	alternate_exon	10779826	10779925	+	asmbl_4712	none	STRG.12755.3	1	STRG.12755.1,STRG.12755.2	2
scaffold_13	alt_donor	1042422	1042423	+	asmbl_10495	none	STRG.15471.1,blat.proc3829879.chain_149	2	STRG.15471.2	1
scaffold_3	retained_intron	11526115	11526216	+	asmbl_40315	none	Trinity_GG_2027_c1_g1_i1,blat.proc3829873.chain_9	2	STRG.3581.1,Trinity_GG_2027_c1_g1_i2,blat.proc3829873.chain_10	3
scaffold_8	alt_donor	8172684	8172685	+	asmbl_51989	none	STRG.10093.2	1	STRG.10093.1	1
scaffold_1	retained_intron	14359766	14359977	-	asmbl_910,asmbl_914	none	Trinity_GG_17537_c0_g1_i2,blat.proc3829887.chain_885,blat.proc3829887.chain_886	3	STRG.1033.1,STRG.1033.2,STRG.1033.3,blat.proc3829887.chain_882,blat.proc3829887.chain_884,blat.proc3829887.chain_887	6
scaffold_1295	spliced_intron	1529	1643	+	asmbl_9258,asmbl_9261	none	STRG.30557.1,blat.proc3829885.chain_3496,blat.proc3829885.chain_3498	3	blat.proc3829885.chain_3495	1
scaffold_5	retained_intron	10195272	10195388	-	asmbl_45708,asmbl_45709	none	blat.proc3829889.chain_2389,blat.proc3829889.chain_2391	2	STRG.6312.1,blat.proc3829889.chain_2386,blat.proc3829889.chain_2387,blat.proc3829889.chain_2388,blat.proc3829889.chain_2390,blat.proc3829889.chain_2393,blat.proc3829889.chain_2394	7
scaffold_22	alternate_exon	11153343	11153409	-	asmbl_30420	none	STRG.25428.2	1	STRG.25428.1,Trinity_GG_31213_c0_g1_i1,blat.proc3829899.chain_2485	3
scaffold_1	alt_acceptor	19359565	19359566	+	asmbl_2577	none	STRG.1346.1,Trinity_GG_788_c0_g1_i2,blat.proc3829871.chain_1388	3	STRG.1346.2	1
scaffold_11	alt_acceptor	15631295	15631296	+	asmbl_6099	none	STRG.14287.2	1	STRG.14287.1,blat.proc3829877.chain_2773,blat.proc3829877.chain_2774,blat.proc3829877.chain_2775	4
scaffold_21	starts_in_intron	2271509	2271509	+	asmbl_28394	none	Trinity_GG_13174_c0_g1_i2,blat.proc3829883.chain_931	2	STRG.23835.1,STRG.23835.2,blat.proc3829883.chain_930	3
scaffold_7	starts_in_intron	12451321	12451321	-	asmbl_50050	none	Trinity_GG_22282_c1_g1_i3,blat.proc3829891.chain_1613	2	STRG.9342.1,STRG.9342.2,STRG.9342.4,Trinity_GG_22282_c1_g1_i7,Trinity_GG_22282_c1_g1_i9,blat.proc3829891.chain_1604,blat.proc3829891.chain_1605,blat.proc3829891.chain_1606,blat.proc3829891.chain_1607,blat.proc3829891.chain_1608,blat.proc3829891.chain_1611,blat.proc3829891.chain_1614	12
scaffold_5	spliced_intron	2400901	2400920	+	asmbl_43831	none	blat.proc3829873.chain_1944	1	STRG.5759.2,Trinity_GG_3157_c1_g1_i1	2
scaffold_7	alt_acceptor	8659761	8659762	-	asmbl_49836,asmbl_49837	none	STRG.9091.2,blat.proc3829891.chain_1356,blat.proc3829891.chain_1358	3	STRG.9091.1	1
scaffold_19	starts_in_intron	1090403	1090403	-	asmbl_21226	none	blat.proc3829897.chain_2639	1	STRG.21884.1,blat.proc3829897.chain_2640	2
scaffold_25	alt_acceptor	9307096	9307097	-	asmbl_34462	none	STRG.27724.2	1	STRG.27724.1,blat.proc3829901.chain_1020	2
scaffold_15	starts_in_intron	7837801	7837801	+	asmbl_14251	none	blat.proc3829879.chain_3001	1	STRG.18352.1,blat.proc3829879.chain_2999,blat.proc3829879.chain_3000	3
scaffold_4	spliced_intron	3237961	3238369	-	asmbl_41164,asmbl_41165	none	STRG.4247.2,blat.proc3829889.chain_367,blat.proc3829889.chain_371	3	STRG.4247.1,STRG.4247.3,Trinity_GG_19386_c0_g1_i6,blat.proc3829889.chain_369	4
scaffold_16	skipped_exon	433622	434014	-	asmbl_16043,asmbl_16048,asmbl_16053	none	STRG.19039.1,blat.proc3829897.chain_21,blat.proc3829897.chain_26	3	blat.proc3829897.chain_20	1
scaffold_13	spliced_intron	9535986	9536300	-	asmbl_9990,asmbl_9992	none	STRG.16202.3,STRG.16202.5,blat.proc3829895.chain_991	3	STRG.16202.1,STRG.16202.2,blat.proc3829895.chain_990	3
scaffold_13	skipped_exon	12460703	12461376	-	asmbl_10104	none	blat.proc3829895.chain_1062	1	STRG.16359.2,STRG.16359.3,blat.proc3829895.chain_1063	3
scaffold_5	alternate_exon	10307278	10310780	+	asmbl_44338	none	STRG.6320.1,blat.proc3829873.chain_2475	2	Trinity_GG_3454_c0_g1_i2,blat.proc3829873.chain_2478	2
scaffold_2	skipped_exon	13896835	13897401	-	asmbl_23549	none	STRG.2382.1,blat.proc3829887.chain_2289	2	STRG.2382.2,blat.proc3829887.chain_2290	2
scaffold_1	retained_intron	5220774	5220883	-	asmbl_253	none	STRG.327.3	1	STRG.327.1,STRG.327.2,blat.proc3829887.chain_154,blat.proc3829887.chain_156	4
scaffold_23	alt_donor	2415279	2415280	+	asmbl_30704,asmbl_30706,asmbl_30707	none	STRG.25693.1,STRG.25693.3,Trinity_GG_14189_c0_g1_i1,blat.proc3829883.chain_2608,blat.proc3829883.chain_2609	5	STRG.25693.4	1
scaffold_2	ends_in_intron	7217129	7217129	+	asmbl_24572,asmbl_24574,asmbl_24578	none	STRG.2054.2,STRG.2054.4,Trinity_GG_1174_c0_g1_i7,Trinity_GG_1174_c0_g1_i9,blat.proc3829871.chain_2149,blat.proc3829871.chain_2154	6	STRG.2054.1,STRG.2054.5,Trinity_GG_1174_c0_g1_i4,blat.proc3829871.chain_2147,blat.proc3829871.chain_2150	5
scaffold_20	starts_in_intron	8003128	8003128	-	asmbl_26872	none	STRG.23335.1,blat.proc3829899.chain_331	2	STRG.23335.2	1
scaffold_4	skipped_exon	7032456	7034797	+	asmbl_42781,asmbl_42784	none	STRG.4538.1,blat.proc3829873.chain_918,blat.proc3829873.chain_920	3	STRG.4538.2	1
scaffold_11	ends_in_intron	10322735	10322735	+	asmbl_5900	none	blat.proc3829877.chain_2516	1	STRG.14028.1,blat.proc3829877.chain_2517	2
scaffold_21	starts_in_intron	394310	394310	-	asmbl_27334	none	Trinity_GG_30225_c0_g1_i5,blat.proc3829899.chain_757	2	STRG.23724.1,STRG.23724.2,Trinity_GG_30225_c0_g1_i2,Trinity_GG_30225_c0_g1_i3,Trinity_GG_30225_c0_g1_i7,blat.proc3829899.chain_754,blat.proc3829899.chain_755,blat.proc3829899.chain_758	8
scaffold_14	alternate_exon	7452207	7452301	-	asmbl_13191,asmbl_13193	none	STRG.17171.1,blat.proc3829895.chain_1735,blat.proc3829895.chain_1736	3	STRG.17171.2	1
scaffold_28	starts_in_intron	4203861	4203861	+	asmbl_38216	none	Trinity_GG_16421_c0_g1_i7,blat.proc3829885.chain_2725	2	STRG.29593.2	1
scaffold_5	starts_in_intron	5893540	5893540	+	asmbl_44042	none	Trinity_GG_3238_c0_g1_i2,blat.proc3829873.chain_2062	2	STRG.5997.1,blat.proc3829873.chain_2063	2
scaffold_1	alt_donor	103169	103170	+	asmbl_1392,asmbl_1393	none	Trinity_GG_23_c0_g1_i3,Trinity_GG_23_c0_g1_i7,blat.proc3829871.chain_40,blat.proc3829871.chain_41	4	STRG.11.1,Trinity_GG_23_c0_g1_i2,blat.proc3829871.chain_42	3
scaffold_11	alternate_exon	3495172	3496182	+	asmbl_5399	none	STRG.13472.1	1	STRG.13472.2,STRG.13472.3	2
scaffold_9	spliced_intron	15395597	15395679	+	asmbl_54543,asmbl_54544,asmbl_54545,asmbl_54548	none	STRG.11731.1,STRG.11731.2,STRG.11731.3,Trinity_GG_6522_c0_g1_i1,Trinity_GG_6522_c0_g1_i4,Trinity_GG_6522_c0_g1_i5,blat.proc3829877.chain_442,blat.proc3829877.chain_443,blat.proc3829877.chain_444	9	Trinity_GG_6522_c0_g1_i6,blat.proc3829877.chain_441	2
scaffold_9	alt_donor	16666346	16666347	-	asmbl_55570	none	STRG.11800.1	1	STRG.11800.2	1
scaffold_4	alt_donor	10911873	10911874	-	asmbl_41611	none	STRG.4810.2	1	STRG.4810.1,blat.proc3829889.chain_840	2
scaffold_18	retained_exon	3915822	3915973	-	asmbl_19824	none	STRG.21192.4	1	blat.proc3829897.chain_2089	1
scaffold_16	retained_exon	10977144	10977215	-	asmbl_16499	none	STRG.19633.1,blat.proc3829897.chain_540	2	blat.proc3829897.chain_538	1
scaffold_20	starts_in_intron	726500	726500	+	asmbl_25530	none	Trinity_GG_12556_c0_g1_i5	1	STRG.22763.5	1
scaffold_15	skipped_exon	11141169	11142116	-	asmbl_15500,asmbl_15502,asmbl_15503,asmbl_15505	none	blat.proc3829895.chain_3284,blat.proc3829895.chain_3285,blat.proc3829895.chain_3287,blat.proc3829895.chain_3288	4	blat.proc3829895.chain_3283,blat.proc3829895.chain_3286,blat.proc3829895.chain_3289	3
scaffold_22	starts_in_intron	761534	761534	+	asmbl_29187	none	Trinity_GG_13667_c0_g1_i2,blat.proc3829883.chain_1770	2	STRG.24717.1,STRG.24717.2,Trinity_GG_13667_c0_g1_i1,blat.proc3829883.chain_1771	4
scaffold_12	starts_in_intron	12081198	12081198	+	asmbl_8947	none	blat.proc3829877.chain_3586	1	STRG.15110.1,blat.proc3829877.chain_3585	2
scaffold_7	alt_donor	15647512	15647513	+	asmbl_51341	none	STRG.9551.3	1	STRG.9551.1,STRG.9551.2,blat.proc3829875.chain_2030,blat.proc3829875.chain_2033	4
scaffold_10	alt_acceptor	16475883	16475884	-	asmbl_3910	none	STRG.13105.3	1	STRG.13105.1,STRG.13105.4,blat.proc3829893.chain_1612	3
scaffold_14	alt_acceptor	7495628	7495629	+	asmbl_12144	none	STRG.17177.2,Trinity_GG_9413_c1_g1_i2,blat.proc3829879.chain_1836	3	STRG.17177.4	1
scaffold_22	retained_intron	4287947	4288162	-	asmbl_30001,asmbl_30008	none	STRG.24837.5,blat.proc3829899.chain_1953	2	STRG.24837.1,STRG.24837.6,blat.proc3829899.chain_1955,blat.proc3829899.chain_1956	4
scaffold_14	alternate_exon	319587	319649	-	asmbl_12800	none	STRG.16711.1	1	blat.proc3829895.chain_1368	1
scaffold_19	alternate_exon	8816569	8816594	+	asmbl_22363	none	STRG.22325.4	1	STRG.22325.1,STRG.22325.2,blat.proc3829881.chain_3253	3
scaffold_19	retained_intron	12822372	12822631	-	asmbl_21758	none	blat.proc3829897.chain_3277	1	blat.proc3829897.chain_3280	1
scaffold_15	retained_intron	5453993	5454323	-	asmbl_15219,asmbl_15223	none	Trinity_GG_27252_c0_g1_i1,blat.proc3829895.chain_2955,blat.proc3829895.chain_2958	3	STRG.18219.1,STRG.18219.2,STRG.18219.3,blat.proc3829895.chain_2952,blat.proc3829895.chain_2953,blat.proc3829895.chain_2956	6
scaffold_26	starts_in_intron	6499821	6499821	-	asmbl_34962	none	blat.proc3829901.chain_1515	1	STRG.28334.1,blat.proc3829901.chain_1514	2
scaffold_21	alt_acceptor	8123091	8123092	+	asmbl_28803	none	STRG.24332.1,blat.proc3829883.chain_1427	2	STRG.24332.2	1
scaffold_14	spliced_intron	15565514	15565621	+	asmbl_12606	none	blat.proc3829879.chain_2468	1	STRG.17784.1	1
scaffold_11	alt_acceptor	1156396	1156397	+	asmbl_5283	none	STRG.13301.1,Trinity_GG_7267_c0_g1_i2,blat.proc3829877.chain_1725	3	Trinity_GG_7267_c0_g1_i5,Trinity_GG_7267_c0_g1_i7,blat.proc3829877.chain_1723,blat.proc3829877.chain_1726	4
scaffold_8	alternate_exon	16504948	16506770	-	asmbl_53419	none	blat.proc3829891.chain_2867	1	Trinity_GG_22960_c0_g1_i9,blat.proc3829891.chain_2858	2
scaffold_5	alt_acceptor	5738077	5738078	+	asmbl_44029,asmbl_44030	none	STRG.5984.1,blat.proc3829873.chain_2048	2	STRG.5984.2,blat.proc3829873.chain_2047	2
scaffold_24	retained_intron	2462777	2462837	-	asmbl_32776	none	Trinity_GG_31793_c0_g1_i1,blat.proc3829899.chain_3507	2	STRG.26454.1	1
scaffold_25	retained_intron	7905436	7905495	-	asmbl_34387	none	STRG.27599.1	1	blat.proc3829901.chain_903	1
scaffold_3	starts_in_intron	6077494	6077494	-	asmbl_38853	none	blat.proc3829887.chain_3022	1	STRG.3254.2,STRG.3254.3,blat.proc3829887.chain_3021,blat.proc3829887.chain_3023	4
scaffold_10	retained_intron	713246	713732	-	asmbl_2906	none	Trinity_GG_23680_c0_g1_i3,blat.proc3829893.chain_437	2	STRG.11948.1,STRG.11948.2,Trinity_GG_23680_c0_g1_i4,Trinity_GG_23680_c0_g1_i7,blat.proc3829893.chain_434,blat.proc3829893.chain_436	6
scaffold_7	retained_intron	13205784	13205988	+	asmbl_51194,asmbl_51197,asmbl_51198	none	STRG.9419.2,STRG.9419.3,blat.proc3829875.chain_1851,blat.proc3829875.chain_1856	4	STRG.9419.1,blat.proc3829875.chain_1853,blat.proc3829875.chain_1855	3
scaffold_21	starts_in_intron	5594967	5594967	-	asmbl_27707	none	blat.proc3829899.chain_1141	1	STRG.24077.1,blat.proc3829899.chain_1140	2
scaffold_1	alt_acceptor	12068101	12068102	-	asmbl_695	none	STRG.820.3	1	STRG.820.1	1
scaffold_7	alt_acceptor	688486	688487	+	asmbl_50437,asmbl_50438	none	STRG.8594.2,STRG.8594.4	2	STRG.8594.1	1
scaffold_3	starts_in_intron	1753784	1753784	+	asmbl_39826	none	blat.proc3829871.chain_3180	1	STRG.2991.1,blat.proc3829871.chain_3181,blat.proc3829871.chain_3185	3
scaffold_13	retained_intron	3021498	3021692	-	asmbl_9465	none	STRG.15592.1	1	STRG.15592.2,blat.proc3829895.chain_364	2
scaffold_2	spliced_intron	15451748	15451824	+	asmbl_25063,asmbl_25064,asmbl_25066,asmbl_25067,asmbl_25068,asmbl_25069,asmbl_25070	none	STRG.2500.1,STRG.2500.2,blat.proc3829871.chain_2679,blat.proc3829871.chain_2680,blat.proc3829871.chain_2682,blat.proc3829871.chain_2683,blat.proc3829871.chain_2684,blat.proc3829871.chain_2685	8	blat.proc3829871.chain_2681	1
scaffold_28	alternate_exon	2197095	2198086	+	asmbl_38040	none	STRG.29368.3	1	Trinity_GG_16268_c1_g1_i1,blat.proc3829885.chain_2448	2
scaffold_13	ends_in_intron	3371885	3371885	+	asmbl_10670	none	Trinity_GG_8579_c0_g1_i2,blat.proc3829879.chain_305	2	STRG.15639.1,blat.proc3829879.chain_306	2
scaffold_14	retained_intron	8007646	8007816	+	asmbl_12168	none	Trinity_GG_9476_c0_g1_i4,blat.proc3829879.chain_1948	2	STRG.17203.2,Trinity_GG_9476_c0_g1_i3,blat.proc3829879.chain_1947,blat.proc3829879.chain_1951	4
scaffold_16	retained_exon	12022267	12022318	-	asmbl_16562	none	STRG.19718.2,blat.proc3829897.chain_671	2	STRG.19718.1,STRG.19718.3,blat.proc3829897.chain_670	3
scaffold_2	starts_in_intron	17714634	17714634	-	asmbl_23759	none	STRG.2670.3	1	STRG.2670.1,STRG.2670.2,STRG.2670.4,blat.proc3829887.chain_2448,blat.proc3829887.chain_2449,blat.proc3829887.chain_2450,blat.proc3829887.chain_2451	7
scaffold_4	alt_acceptor	14285618	14285619	-	asmbl_41782,asmbl_41783	none	STRG.5038.1,STRG.5038.2,blat.proc3829889.chain_1087,blat.proc3829889.chain_1088	4	STRG.5038.3,STRG.5038.4	2
scaffold_5	retained_intron	10135753	10135836	+	asmbl_44326	none	blat.proc3829873.chain_2356	1	STRG.6303.1,blat.proc3829873.chain_2354,blat.proc3829873.chain_2357	3
scaffold_15	starts_in_intron	12605276	12605276	+	asmbl_14526	none	blat.proc3829879.chain_3322	1	STRG.18704.1,STRG.18704.2,blat.proc3829879.chain_3323,blat.proc3829879.chain_3324	4
scaffold_12	retained_intron	14124654	14125258	-	asmbl_8121	none	Trinity_GG_25557_c1_g1_i1,blat.proc3829893.chain_3712	2	STRG.15232.1,blat.proc3829893.chain_3710,blat.proc3829893.chain_3711	3
scaffold_15	alt_acceptor	6889440	6889441	-	asmbl_15276,asmbl_15281	none	STRG.18290.3,blat.proc3829895.chain_2940	2	STRG.18290.1,STRG.18290.2,STRG.18290.5,STRG.18290.6,blat.proc3829895.chain_2933,blat.proc3829895.chain_2934,blat.proc3829895.chain_2936,blat.proc3829895.chain_2937,blat.proc3829895.chain_2939,blat.proc3829895.chain_2942	10
scaffold_1	alternate_exon	6847223	6858086	-	asmbl_400	none	STRG.482.1,blat.proc3829887.chain_375	2	STRG.482.3,blat.proc3829887.chain_376	2
scaffold_18	retained_intron	1862675	1862768	-	asmbl_19685,asmbl_19686	none	STRG.21063.1,blat.proc3829897.chain_1842	2	STRG.21063.2,STRG.21063.3,blat.proc3829897.chain_1841	3
scaffold_13	retained_intron	5804903	5805414	+	asmbl_10885	none	blat.proc3829879.chain_647	1	STRG.15880.1,STRG.15880.2,STRG.15880.3,blat.proc3829879.chain_648,blat.proc3829879.chain_649	5
scaffold_23	alt_donor	7998193	7998194	+	asmbl_31046	none	STRG.26092.2	1	STRG.26092.1	1
scaffold_6	alt_donor	3320915	3320916	-	asmbl_48194	none	STRG.7329.4	1	STRG.7329.1,STRG.7329.2,STRG.7329.3,blat.proc3829889.chain_3341,blat.proc3829889.chain_3342,blat.proc3829889.chain_3343	6
scaffold_18	starts_in_intron	8375393	8375393	-	asmbl_20035,asmbl_20036	none	STRG.21500.1,STRG.21500.3	2	STRG.21500.2	1
scaffold_3	retained_intron	5926294	5926496	-	asmbl_38829	none	blat.proc3829887.chain_2993	1	STRG.3248.1,blat.proc3829887.chain_2990,blat.proc3829887.chain_2991,blat.proc3829887.chain_2992,blat.proc3829887.chain_2994	5
scaffold_13	retained_intron	2321236	2321329	+	asmbl_10593	none	blat.proc3829879.chain_173	1	STRG.15543.2,STRG.15543.3,STRG.15543.4,STRG.15543.5,STRG.15543.6,STRG.15543.7,STRG.15543.8,STRG.15543.9,Trinity_GG_8511_c1_g1_i5,blat.proc3829879.chain_168,blat.proc3829879.chain_170	11
scaffold_5	alt_donor	4698126	4698127	+	asmbl_43947,asmbl_43953,asmbl_43956	none	STRG.5917.5,STRG.5917.7,blat.proc3829873.chain_2095,blat.proc3829873.chain_2096	4	STRG.5917.6	1
scaffold_12	alt_donor	12306321	12306322	+	asmbl_8954	none	STRG.15117.6	1	STRG.15117.1,STRG.15117.2,STRG.15117.3,STRG.15117.4,STRG.15117.5,blat.proc3829877.chain_3594,blat.proc3829877.chain_3595,blat.proc3829877.chain_3596	8
scaffold_17	spliced_intron	2721370	2721870	+	asmbl_17821,asmbl_17823	none	STRG.20056.1,STRG.20056.2,Trinity_GG_10966_c0_g1_i2,blat.proc3829881.chain_843	4	Trinity_GG_10966_c0_g1_i1,blat.proc3829881.chain_844	2
scaffold_14	ends_in_intron	8349660	8349660	-	asmbl_13276	none	blat.proc3829895.chain_1864	1	STRG.17246.2	1
scaffold_14	alternate_exon	16026802	16026891	+	asmbl_12637	none	STRG.17829.1,blat.proc3829879.chain_2497	2	STRG.17829.2	1
scaffold_2	retained_intron	16362712	16362791	+	asmbl_25156	none	STRG.2574.2,Trinity_GG_1456_c0_g1_i3,blat.proc3829871.chain_2763	3	STRG.2574.1,Trinity_GG_1456_c0_g1_i1,Trinity_GG_1456_c0_g1_i2,blat.proc3829871.chain_2762,blat.proc3829871.chain_2764	5
scaffold_4	retained_intron	4415761	4416396	+	asmbl_42574,asmbl_42575,asmbl_42583,asmbl_42584,asmbl_42585,asmbl_42586,asmbl_42587,asmbl_42588,asmbl_42590	none	Trinity_GG_2404_c0_g1_i10,Trinity_GG_2404_c0_g1_i19,blat.proc3829873.chain_680,blat.proc3829873.chain_681,blat.proc3829873.chain_685,blat.proc3829873.chain_686,blat.proc3829873.chain_687,blat.proc3829873.chain_688,blat.proc3829873.chain_689,blat.proc3829873.chain_690,blat.proc3829873.chain_698	11	STRG.4344.1,STRG.4344.2,STRG.4344.3,STRG.4344.4,Trinity_GG_2404_c0_g1_i14,Trinity_GG_2404_c0_g1_i5,Trinity_GG_2404_c0_g1_i8,blat.proc3829873.chain_682,blat.proc3829873.chain_683,blat.proc3829873.chain_691,blat.proc3829873.chain_692,blat.proc3829873.chain_695,blat.proc3829873.chain_696,blat.proc3829873.chain_697	14
scaffold_1	alt_donor	20687849	20687850	-	asmbl_1188	none	blat.proc3829887.chain_1289	1	STRG.1408.1	1
scaffold_28	retained_exon	2811310	2811348	-	asmbl_37410	none	blat.proc3829901.chain_2493	1	STRG.29459.1,blat.proc3829901.chain_2491,blat.proc3829901.chain_2494,blat.proc3829901.chain_2497	4
scaffold_23	retained_intron	222857	223034	+	asmbl_30596	none	STRG.25521.1,blat.proc3829883.chain_2458	2	STRG.25521.2,blat.proc3829883.chain_2456	2
scaffold_3	starts_in_intron	5528058	5528058	-	asmbl_38805	none	blat.proc3829887.chain_2916	1	STRG.3223.1,blat.proc3829887.chain_2917	2
scaffold_11	retained_exon	17293756	17293837	-	asmbl_7241	none	STRG.14379.2,blat.proc3829893.chain_2787	2	STRG.14379.1,blat.proc3829893.chain_2786	2
scaffold_9	retained_intron	11825456	11825553	-	asmbl_55279,asmbl_55280,asmbl_55282	none	STRG.11490.2,STRG.11490.4,blat.proc3829891.chain_3534	3	blat.proc3829891.chain_3533	1
scaffold_12	spliced_intron	4783952	4784097	-	asmbl_7581,asmbl_7582,asmbl_7583,asmbl_7586,asmbl_7587	none	STRG.14646.1,STRG.14646.2,STRG.14646.4,blat.proc3829893.chain_3017,blat.proc3829893.chain_3019,blat.proc3829893.chain_3021,blat.proc3829893.chain_3023,blat.proc3829893.chain_3025	8	STRG.14646.3,STRG.14646.5,Trinity_GG_25172_c0_g1_i11,blat.proc3829893.chain_3018,blat.proc3829893.chain_3022,blat.proc3829893.chain_3024	6
scaffold_15	alternate_exon	12871448	12871484	-	asmbl_15625	none	STRG.18726.2	1	STRG.18726.1,Trinity_GG_27526_c0_g1_i1,blat.proc3829895.chain_3490	3
scaffold_8	spliced_intron	6028690	6028824	+	asmbl_51909,asmbl_51912,asmbl_51914,asmbl_51915	none	Trinity_GG_5590_c1_g1_i6,blat.proc3829875.chain_2551,blat.proc3829875.chain_2553,blat.proc3829875.chain_2554,blat.proc3829875.chain_2555	5	blat.proc3829875.chain_2552	1
scaffold_10	alt_acceptor	8442046	8442047	-	asmbl_3501	none	STRG.12587.2	1	STRG.12587.1,blat.proc3829893.chain_1081	2
scaffold_26	alternate_exon	5033689	5035808	+	asmbl_35463,asmbl_35465,asmbl_35468,asmbl_35469,asmbl_35477	none	STRG.28206.1,STRG.28206.2,blat.proc3829885.chain_1157,blat.proc3829885.chain_1162,blat.proc3829885.chain_1164,blat.proc3829885.chain_1165,blat.proc3829885.chain_1168	7	blat.proc3829885.chain_1156,blat.proc3829885.chain_1159,blat.proc3829885.chain_1166	3
scaffold_3	spliced_intron	13898905	13899019	+	asmbl_40424,asmbl_40427,asmbl_40428	none	STRG.3737.1,STRG.3737.2,blat.proc3829873.chain_144,blat.proc3829873.chain_145	4	blat.proc3829873.chain_143	1
scaffold_27	spliced_intron	3063415	3063502	+	asmbl_36142	none	STRG.28771.1	1	STRG.28771.2,Trinity_GG_15920_c0_g1_i2,blat.proc3829885.chain_1851,blat.proc3829885.chain_1852,blat.proc3829885.chain_1853,blat.proc3829885.chain_1854	6
scaffold_28	alternate_exon	6490639	6491577	-	asmbl_37666	none	STRG.29728.1,Trinity_GG_33635_c1_g1_i1,blat.proc3829901.chain_2779,blat.proc3829901.chain_2780	4	STRG.29728.2	1
scaffold_26	spliced_intron	5954384	5954477	-	asmbl_34926,asmbl_34928	none	STRG.28289.1,STRG.28289.2,blat.proc3829901.chain_1471	3	blat.proc3829901.chain_1472	1
scaffold_23	retained_intron	10897406	10897583	+	asmbl_31182	none	blat.proc3829883.chain_3189	1	STRG.26269.2,blat.proc3829883.chain_3191	2
scaffold_21	ends_in_intron	3124240	3124240	-	asmbl_27543	none	Trinity_GG_30335_c0_g1_i6,blat.proc3829899.chain_977	2	STRG.23930.1,STRG.23930.3,STRG.23930.4,STRG.23930.5,blat.proc3829899.chain_978,blat.proc3829899.chain_979,blat.proc3829899.chain_980,blat.proc3829899.chain_981	8
scaffold_2	spliced_intron	15271311	15271411	+	asmbl_25032,asmbl_25033,asmbl_25035,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25043,asmbl_25044,asmbl_25045	none	STRG.2481.1,blat.proc3829871.chain_2524,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2528,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2536,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	11	blat.proc3829871.chain_2535	1
scaffold_13	skipped_exon	2976996	2977755	-	asmbl_9459	none	STRG.15584.3	1	STRG.15584.1,STRG.15584.2,blat.proc3829895.chain_363	3
scaffold_9	starts_in_intron	6905233	6905233	-	asmbl_55061	none	Trinity_GG_23218_c0_g1_i4,blat.proc3829891.chain_3338	2	STRG.11190.2,blat.proc3829891.chain_3337	2
scaffold_13	retained_intron	738856	739027	+	asmbl_10483	none	STRG.15446.2,blat.proc3829879.chain_133	2	STRG.15446.1,blat.proc3829879.chain_131	2
scaffold_13	spliced_intron	15814218	15814405	+	asmbl_11520	none	STRG.16612.1	1	blat.proc3829879.chain_1312	1
scaffold_13	alternate_exon	11379298	11382362	-	asmbl_10043,asmbl_10045,asmbl_10050,asmbl_10052,asmbl_10053,asmbl_10054	none	STRG.16287.1,STRG.16287.2,STRG.16287.3,STRG.16287.7,Trinity_GG_26140_c0_g1_i1,Trinity_GG_26140_c0_g1_i3,Trinity_GG_26140_c0_g1_i4,Trinity_GG_26140_c0_g1_i5,blat.proc3829895.chain_1024,blat.proc3829895.chain_1026,blat.proc3829895.chain_1028,blat.proc3829895.chain_1033,blat.proc3829895.chain_1034	13	STRG.16287.6,Trinity_GG_26140_c0_g1_i2,blat.proc3829895.chain_1027	3
scaffold_17	alternate_exon	8250539	8250778	+	asmbl_18092	none	blat.proc3829881.chain_1189	1	STRG.20433.1,blat.proc3829881.chain_1191	2
scaffold_4	starts_in_intron	13388835	13388835	+	asmbl_43119	none	Trinity_GG_2765_c0_g1_i1,blat.proc3829873.chain_1293	2	STRG.4966.1,blat.proc3829873.chain_1292	2
scaffold_21	spliced_intron	1151006	1151179	+	asmbl_28352	none	STRG.23774.3	1	STRG.23774.1,blat.proc3829883.chain_939	2
scaffold_14	alt_acceptor	6951264	6951265	-	asmbl_13153	none	STRG.17119.1	1	STRG.17119.2,Trinity_GG_26602_c0_g1_i1,blat.proc3829895.chain_1792	3
scaffold_22	starts_in_intron	8824242	8824242	+	asmbl_29580	none	Trinity_GG_13961_c0_g1_i1	1	STRG.25223.2,STRG.25223.4	2
scaffold_15	retained_intron	12000408	12000658	-	asmbl_15566,asmbl_15568	none	Trinity_GG_27487_c0_g1_i4,blat.proc3829895.chain_3419,blat.proc3829895.chain_3421	3	blat.proc3829895.chain_3417	1
scaffold_13	retained_exon	518334	519848	+	asmbl_10458	none	STRG.15434.4	1	STRG.15434.3,Trinity_GG_8491_c0_g1_i1,blat.proc3829879.chain_110	3
scaffold_17	retained_intron	1360485	1360559	-	asmbl_18748	none	blat.proc3829897.chain_916	1	STRG.19961.1,blat.proc3829897.chain_917	2
scaffold_2	skipped_exon	6899167	6900291	+	asmbl_24541,asmbl_24542,asmbl_24543,asmbl_24544,asmbl_24545,asmbl_24546,asmbl_24547	none	STRG.2036.1,STRG.2036.2,STRG.2036.3,STRG.2036.4,blat.proc3829871.chain_2018,blat.proc3829871.chain_2019,blat.proc3829871.chain_2022	7	blat.proc3829871.chain_2015,blat.proc3829871.chain_2016	2
scaffold_18	spliced_intron	13634278	13634349	-	asmbl_20204	none	STRG.21784.1,blat.proc3829897.chain_2525	2	blat.proc3829897.chain_2524	1
scaffold_3	alternate_exon	17375094	17375170	+	asmbl_40634	none	STRG.3967.2,Trinity_GG_2227_c0_g1_i1	2	STRG.3967.1,blat.proc3829873.chain_370	2
scaffold_10	starts_in_intron	13530290	13530290	+	asmbl_4885	none	Trinity_GG_7139_c0_g1_i2,blat.proc3829877.chain_1517	2	STRG.12940.1,Trinity_GG_7139_c0_g1_i1,blat.proc3829877.chain_1516	3
scaffold_13	alternate_exon	11379628	11380113	-	asmbl_10041	none	Trinity_GG_26140_c0_g1_i7,blat.proc3829895.chain_1030	2	STRG.16287.1,STRG.16287.2,STRG.16287.3,STRG.16287.4,STRG.16287.5,STRG.16287.7,Trinity_GG_26140_c0_g1_i1,Trinity_GG_26140_c0_g1_i3,Trinity_GG_26140_c0_g1_i4,Trinity_GG_26140_c0_g1_i5,Trinity_GG_26140_c0_g1_i8,blat.proc3829895.chain_1024,blat.proc3829895.chain_1026,blat.proc3829895.chain_1028,blat.proc3829895.chain_1033,blat.proc3829895.chain_1034	16
scaffold_10	alt_donor	5811430	5811431	+	asmbl_4483,asmbl_4485	none	STRG.12394.2,STRG.12394.3,blat.proc3829877.chain_1036	3	STRG.12394.1,blat.proc3829877.chain_1034,blat.proc3829877.chain_1035	3
scaffold_18	retained_intron	7648011	7649078	+	asmbl_20784,asmbl_20785	none	STRG.21454.1,Trinity_GG_11854_c0_g1_i1,blat.proc3829881.chain_2423,blat.proc3829881.chain_2424	4	STRG.21454.2	1
scaffold_20	retained_exon	11613242	11613315	-	asmbl_27093	none	blat.proc3829899.chain_703	1	STRG.23657.2,STRG.23657.3	2
scaffold_5	spliced_intron	10195447	10195577	-	asmbl_45702,asmbl_45703,asmbl_45704,asmbl_45706,asmbl_45707,asmbl_45708	none	STRG.6312.1,blat.proc3829889.chain_2386,blat.proc3829889.chain_2387,blat.proc3829889.chain_2388,blat.proc3829889.chain_2389,blat.proc3829889.chain_2393,blat.proc3829889.chain_2394	7	blat.proc3829889.chain_2390,blat.proc3829889.chain_2391	2
scaffold_3	spliced_intron	12774687	12774814	+	asmbl_40369,asmbl_40370	none	STRG.3666.1,STRG.3666.2	2	STRG.3666.3,Trinity_GG_2058_c0_g1_i1,blat.proc3829873.chain_65	3
scaffold_23	starts_in_intron	7046650	7046650	-	asmbl_31732	none	blat.proc3829899.chain_3119	1	STRG.26010.1,blat.proc3829899.chain_3117,blat.proc3829899.chain_3118,blat.proc3829899.chain_3120	4
scaffold_2	alternate_exon	16284810	16284928	+	asmbl_25137,asmbl_25139	none	STRG.2560.1,blat.proc3829871.chain_2742,blat.proc3829871.chain_2744	3	STRG.2560.2,blat.proc3829871.chain_2743	2
scaffold_2	alt_donor	17973063	17973064	+	asmbl_25242,asmbl_25243,asmbl_25244,asmbl_25245	none	STRG.2687.1,blat.proc3829871.chain_2900,blat.proc3829871.chain_2901,blat.proc3829871.chain_2902,blat.proc3829871.chain_2903	5	STRG.2687.2	1
scaffold_22	spliced_intron	4223113	4223394	-	asmbl_29977,asmbl_29978,asmbl_29979,asmbl_29980,asmbl_29986,asmbl_29990	none	STRG.24838.1,STRG.24838.2,STRG.24838.3,STRG.24838.4,blat.proc3829899.chain_1976,blat.proc3829899.chain_1977	6	blat.proc3829899.chain_1975	1
scaffold_16	retained_exon	8645174	8645323	+	asmbl_17226,asmbl_17228,asmbl_17232	none	STRG.19479.1,STRG.19479.3,STRG.19479.4,blat.proc3829881.chain_362	4	STRG.19479.5,blat.proc3829881.chain_361	2
scaffold_10	alt_acceptor	13458298	13458299	-	asmbl_3785	none	STRG.12925.1,blat.proc3829893.chain_1410	2	STRG.12925.3	1
scaffold_5	spliced_intron	6708882	6708998	-	asmbl_45517	none	Trinity_GG_20388_c0_g1_i2,blat.proc3829889.chain_2074	2	STRG.6069.1,STRG.6069.2,Trinity_GG_20388_c0_g1_i1,blat.proc3829889.chain_2075,blat.proc3829889.chain_2076	5
scaffold_15	retained_intron	15906565	15906998	-	asmbl_15826,asmbl_15827	none	Trinity_GG_27666_c0_g1_i1,Trinity_GG_27666_c0_g1_i9,blat.proc3829895.chain_3736,blat.proc3829895.chain_3737	4	STRG.18963.1,Trinity_GG_27666_c0_g1_i3,Trinity_GG_27666_c0_g1_i4,Trinity_GG_27666_c0_g1_i5,Trinity_GG_27666_c0_g1_i8,blat.proc3829895.chain_3732,blat.proc3829895.chain_3733,blat.proc3829895.chain_3734,blat.proc3829895.chain_3735	9
scaffold_28	alt_donor	33306	33307	+	asmbl_37941,asmbl_37943	none	STRG.29211.1,blat.proc3829885.chain_2359,blat.proc3829885.chain_2360	3	STRG.29211.2,blat.proc3829885.chain_2361	2
scaffold_15	alternate_exon	10656856	10657064	-	asmbl_15458,asmbl_15463	none	STRG.18545.1,blat.proc3829895.chain_3321,blat.proc3829895.chain_3322	3	STRG.18545.3,STRG.18545.4,blat.proc3829895.chain_3320	3
scaffold_15	alternate_exon	1690559	1690611	+	asmbl_13972	none	STRG.17962.2	1	STRG.17962.1,blat.proc3829879.chain_2664	2
scaffold_6	starts_in_intron	18835052	18835052	+	asmbl_47795,asmbl_47802,asmbl_47803	none	STRG.8547.4,STRG.8547.5,STRG.8547.6,Trinity_GG_4669_c0_g1_i6,blat.proc3829875.chain_889	5	STRG.8547.1,STRG.8547.2,STRG.8547.3,blat.proc3829875.chain_887,blat.proc3829875.chain_888,blat.proc3829875.chain_890,blat.proc3829875.chain_891	7
scaffold_2	ends_in_intron	13446017	13446017	-	asmbl_23534	none	blat.proc3829887.chain_2213	1	STRG.2365.1,blat.proc3829887.chain_2214,blat.proc3829887.chain_2216	3
scaffold_16	spliced_intron	4095539	4095747	+	asmbl_16959,asmbl_16964,asmbl_16965,asmbl_16966,asmbl_16967	none	STRG.19214.1,STRG.19214.2,STRG.19214.3,blat.proc3829881.chain_77,blat.proc3829881.chain_82	5	Trinity_GG_10532_c0_g1_i2	1
scaffold_25	starts_in_intron	8705013	8705013	+	asmbl_33747,asmbl_33753	none	Trinity_GG_15273_c0_g1_i6,Trinity_GG_15273_c0_g1_i8,blat.proc3829885.chain_697,blat.proc3829885.chain_700	4	STRG.27679.1,STRG.27679.2,STRG.27679.3,blat.proc3829885.chain_694,blat.proc3829885.chain_698,blat.proc3829885.chain_701	6
scaffold_3	alt_acceptor	14835434	14835435	+	asmbl_40521	none	Trinity_GG_2121_c0_g1_i4	1	STRG.3834.1,Trinity_GG_2121_c0_g1_i1,Trinity_GG_2121_c0_g1_i3,blat.proc3829873.chain_184,blat.proc3829873.chain_185	5
scaffold_20	ends_in_intron	5875304	5875304	+	asmbl_25790	none	blat.proc3829883.chain_315	1	STRG.23175.1,blat.proc3829883.chain_316	2
scaffold_12	retained_intron	14988995	14989423	-	asmbl_8160	none	Trinity_GG_25571_c1_g1_i1,blat.proc3829893.chain_3745	2	STRG.15282.1,STRG.15282.2,STRG.15282.3,STRG.15282.4,Trinity_GG_25571_c0_g1_i1,Trinity_GG_25571_c0_g1_i3,Trinity_GG_25571_c0_g1_i4,Trinity_GG_25571_c0_g1_i5,blat.proc3829893.chain_3740,blat.proc3829893.chain_3741,blat.proc3829893.chain_3742,blat.proc3829893.chain_3744	12
scaffold_6	retained_intron	18007958	18008258	-	asmbl_49156	none	Trinity_GG_21834_c1_g1_i3,blat.proc3829891.chain_781,blat.proc3829891.chain_782	3	STRG.8480.1,blat.proc3829891.chain_779,blat.proc3829891.chain_780	3
scaffold_1	alternate_exon	5136272	5137142	+	asmbl_1698	none	blat.proc3829871.chain_380	1	STRG.317.1	1
scaffold_21	ends_in_intron	3785065	3785065	-	asmbl_27567	none	blat.proc3829899.chain_1018	1	STRG.23954.1,blat.proc3829899.chain_1017	2
scaffold_6	ends_in_intron	18010829	18010829	-	asmbl_49157	none	Trinity_GG_21834_c1_g2_i1,blat.proc3829891.chain_783	2	STRG.8480.1,blat.proc3829891.chain_779,blat.proc3829891.chain_780,blat.proc3829891.chain_781	4
scaffold_9	skipped_exon	3674467	3676841	-	asmbl_54885,asmbl_54891	none	STRG.10971.1,blat.proc3829891.chain_3074,blat.proc3829891.chain_3084,blat.proc3829891.chain_3085	4	STRG.10971.3	1
scaffold_24	alt_acceptor	6168125	6168126	-	asmbl_32925	none	STRG.26658.2,blat.proc3829899.chain_3658	2	STRG.26658.3,blat.proc3829899.chain_3659	2
scaffold_13	alternate_exon	366291	366456	-	asmbl_9282	none	Trinity_GG_25666_c0_g1_i3,blat.proc3829895.chain_165	2	STRG.15426.3	1
scaffold_6	retained_intron	1584416	1584521	+	asmbl_46676	none	Trinity_GG_3931_c1_g1_i2	1	STRG.7199.1	1
scaffold_21	starts_in_intron	7387002	7387002	+	asmbl_28750	none	STRG.24246.3,blat.proc3829883.chain_1382	2	STRG.24246.1,STRG.24246.2,blat.proc3829883.chain_1379,blat.proc3829883.chain_1381	4
scaffold_2	skipped_exon	1301947	1302291	+	asmbl_24197	none	STRG.1611.1,Trinity_GG_927_c0_g1_i1,blat.proc3829871.chain_1707	3	STRG.1611.3,Trinity_GG_927_c0_g1_i2,blat.proc3829871.chain_1708	3
scaffold_8	alternate_exon	11829102	11829146	+	asmbl_52263	none	STRG.10379.2	1	STRG.10379.1,blat.proc3829875.chain_2918	2
scaffold_25	retained_exon	9939830	9939881	-	asmbl_34500	none	STRG.27802.2	1	STRG.27802.1	1
scaffold_13	retained_intron	2270956	2271084	-	asmbl_9404,asmbl_9405	none	blat.proc3829895.chain_310,blat.proc3829895.chain_317	2	STRG.15533.1,STRG.15533.2,STRG.15533.3,blat.proc3829895.chain_308,blat.proc3829895.chain_311	5
scaffold_14	skipped_exon	4153501	4154454	+	asmbl_11955,asmbl_11957	none	STRG.16957.1,STRG.16957.3	2	STRG.16957.2	1
scaffold_16	spliced_intron	3706316	3706582	+	asmbl_16936,asmbl_16939	none	STRG.19166.1,blat.proc3829881.chain_35,blat.proc3829881.chain_36	3	blat.proc3829881.chain_34	1
scaffold_21	alternate_exon	2469229	2469839	-	asmbl_27483	none	STRG.23863.3,Trinity_GG_30292_c0_g1_i12,blat.proc3829899.chain_903	3	blat.proc3829899.chain_904	1
scaffold_2	alt_donor	20313308	20313309	+	asmbl_25357	none	STRG.2875.4	1	STRG.2875.3,blat.proc3829871.chain_3036	2
scaffold_14	alternate_exon	3380767	3380833	+	asmbl_11914	none	STRG.16908.2	1	STRG.16908.1,blat.proc3829879.chain_1620	2
scaffold_4	retained_intron	9343784	9343976	-	asmbl_41548,asmbl_41549	none	blat.proc3829889.chain_862,blat.proc3829889.chain_863	2	STRG.4740.1,blat.proc3829889.chain_860,blat.proc3829889.chain_861	3
scaffold_6	skipped_exon	9956533	9958195	+	asmbl_47192	none	STRG.7828.2,blat.proc3829875.chain_191	2	STRG.7828.1,blat.proc3829875.chain_189	2
scaffold_6	alt_acceptor	18837597	18837598	+	asmbl_47795,asmbl_47796,asmbl_47798,asmbl_47800,asmbl_47801	none	STRG.8547.1,STRG.8547.2,STRG.8547.3,STRG.8547.4,Trinity_GG_4669_c0_g1_i6,blat.proc3829875.chain_888,blat.proc3829875.chain_889,blat.proc3829875.chain_890	8	STRG.8547.5,blat.proc3829875.chain_887	2
scaffold_20	ends_in_intron	10318993	10318993	+	asmbl_26101	none	blat.proc3829883.chain_683	1	STRG.23562.1,Trinity_GG_13040_c0_g1_i2,blat.proc3829883.chain_677	3
scaffold_19	retained_exon	9454023	9454055	+	asmbl_22396	none	STRG.22365.1,blat.proc3829881.chain_3306	2	STRG.22365.2,STRG.22365.3,blat.proc3829881.chain_3308	3
scaffold_10	starts_in_intron	11483832	11483832	+	asmbl_4737	none	STRG.12796.2	1	STRG.12796.1	1
scaffold_21	ends_in_intron	2165670	2165670	-	asmbl_27460,asmbl_27462	none	STRG.23826.2,blat.proc3829899.chain_824	2	STRG.23826.1,blat.proc3829899.chain_825,blat.proc3829899.chain_826	3
scaffold_21	retained_exon	402606	403222	-	asmbl_27332	none	STRG.23724.1,Trinity_GG_30225_c0_g1_i3,blat.proc3829899.chain_755	3	STRG.23724.2	1
scaffold_10	ends_in_intron	9053649	9053649	-	asmbl_3567	none	Trinity_GG_24079_c0_g1_i7,blat.proc3829893.chain_1151	2	STRG.12645.1,STRG.12645.2,blat.proc3829893.chain_1153,blat.proc3829893.chain_1156	4
scaffold_22	starts_in_intron	7944187	7944187	+	asmbl_29533	none	blat.proc3829883.chain_2161	1	STRG.25137.1,blat.proc3829883.chain_2159	2
scaffold_4	spliced_intron	17537231	17537656	+	asmbl_43392	none	STRG.5340.1,blat.proc3829873.chain_1619	2	STRG.5340.2,blat.proc3829873.chain_1618	2
scaffold_5	alt_donor	8135152	8135153	+	asmbl_44195	none	STRG.6171.2,blat.proc3829873.chain_2332	2	STRG.6171.1,blat.proc3829873.chain_2334	2
scaffold_25	spliced_intron	5157955	5158050	-	asmbl_34230	none	blat.proc3829901.chain_743	1	blat.proc3829901.chain_748	1
scaffold_23	alt_donor	2992369	2992370	-	asmbl_31490,asmbl_31491,asmbl_31492	none	STRG.25729.1,blat.proc3829899.chain_2864,blat.proc3829899.chain_2872	3	STRG.25729.3	1
scaffold_27	spliced_intron	314278	314458	-	asmbl_36615,asmbl_36616,asmbl_36617	none	STRG.28538.1,STRG.28538.2,STRG.28538.3	3	Trinity_GG_32948_c0_g1_i13,blat.proc3829901.chain_1673	2
scaffold_25	starts_in_intron	4318351	4318351	+	asmbl_33483,asmbl_33485,asmbl_33487	none	STRG.27342.2,STRG.27342.3,blat.proc3829885.chain_382,blat.proc3829885.chain_383	4	STRG.27342.1,Trinity_GG_15082_c0_g1_i2,blat.proc3829885.chain_384	3
scaffold_17	alt_donor	3143575	3143576	-	asmbl_18848,asmbl_18849	none	STRG.20085.1,STRG.20085.2,Trinity_GG_28260_c0_g1_i1,blat.proc3829897.chain_1001	4	STRG.20085.3,Trinity_GG_28260_c0_g1_i2,blat.proc3829897.chain_1000	3
scaffold_13	retained_intron	8831245	8831460	-	asmbl_9951	none	Trinity_GG_26045_c0_g1_i2,blat.proc3829895.chain_859	2	STRG.16144.1,blat.proc3829895.chain_860	2
scaffold_3	alt_donor	4882494	4882495	-	asmbl_38776	none	STRG.3177.2	1	STRG.3177.1,blat.proc3829887.chain_2891	2
scaffold_25	starts_in_intron	689172	689172	+	asmbl_33342	none	blat.proc3829885.chain_145	1	STRG.27105.1	1
scaffold_7	skipped_exon	5916256	5917054	-	asmbl_49718	none	blat.proc3829891.chain_1167	1	STRG.8887.1,STRG.8887.3,STRG.8887.4,blat.proc3829891.chain_1163,blat.proc3829891.chain_1164,blat.proc3829891.chain_1165	6
scaffold_16	alt_acceptor	290192	290193	+	asmbl_16806	none	STRG.19012.2	1	STRG.19012.1,blat.proc3829879.chain_3638,blat.proc3829879.chain_3639	3
scaffold_13	alt_acceptor	663494	663495	-	asmbl_9327,asmbl_9329	none	STRG.15439.2,Trinity_GG_25669_c0_g1_i4,Trinity_GG_25669_c0_g1_i5,blat.proc3829895.chain_176,blat.proc3829895.chain_177	5	STRG.15439.1,Trinity_GG_25669_c0_g1_i3,blat.proc3829895.chain_178	3
scaffold_17	ends_in_intron	12397971	12397971	-	asmbl_19380	none	Trinity_GG_28645_c0_g1_i4,blat.proc3829897.chain_1626	2	STRG.20756.1,STRG.20756.2	2
scaffold_2	alternate_exon	1595711	1598410	+	asmbl_24238	none	STRG.1628.4	1	Trinity_GG_905_c0_g1_i6,blat.proc3829871.chain_1665	2
scaffold_3	retained_intron	17457148	17457253	+	asmbl_40642	none	Trinity_GG_2205_c0_g1_i4,blat.proc3829873.chain_334	2	STRG.3976.1,STRG.3976.2,STRG.3976.3,STRG.3976.4,Trinity_GG_2205_c0_g1_i1,Trinity_GG_2205_c0_g1_i3,blat.proc3829873.chain_331,blat.proc3829873.chain_332,blat.proc3829873.chain_333	9
scaffold_13	alt_acceptor	5339633	5339634	+	asmbl_10820,asmbl_10822	none	STRG.15817.2,blat.proc3829879.chain_511	2	STRG.15817.1,blat.proc3829879.chain_512,blat.proc3829879.chain_514	3
scaffold_7	alt_donor	12451153	12451154	-	asmbl_50044	none	Trinity_GG_22282_c1_g1_i12,blat.proc3829891.chain_1610	2	STRG.9342.3	1
scaffold_8	spliced_intron	4186166	4186288	+	asmbl_51803,asmbl_51805	none	STRG.9886.1,blat.proc3829875.chain_2406,blat.proc3829875.chain_2409	3	blat.proc3829875.chain_2408	1
scaffold_24	skipped_exon	10130846	10133800	+	asmbl_32544	none	STRG.26962.2,blat.proc3829885.chain_42	2	STRG.26962.1	1
scaffold_14	skipped_exon	3551338	3552180	-	asmbl_13004	none	STRG.16931.3	1	STRG.16931.1,STRG.16931.2,blat.proc3829895.chain_1640,blat.proc3829895.chain_1641	4
scaffold_10	starts_in_intron	13512582	13512582	-	asmbl_3797	none	STRG.12937.2,blat.proc3829893.chain_1330	2	STRG.12937.1,blat.proc3829893.chain_1331	2
scaffold_22	alt_acceptor	5937041	5937042	+	asmbl_29366	none	STRG.24924.2	1	STRG.24924.3	1
scaffold_12	starts_in_intron	7509240	7509240	-	asmbl_7721	none	Trinity_GG_25281_c2_g1_i1,blat.proc3829893.chain_3226	2	STRG.14818.1,Trinity_GG_25281_c2_g1_i2,blat.proc3829893.chain_3225	3
scaffold_3	skipped_exon	14512784	14514077	-	asmbl_39332	none	STRG.3790.3,Trinity_GG_19112_c0_g1_i1,blat.proc3829887.chain_3597	3	STRG.3790.1,STRG.3790.2	2
scaffold_26	spliced_intron	5945002	5945154	-	asmbl_34925	none	STRG.28288.2,blat.proc3829901.chain_1466	2	STRG.28288.1,blat.proc3829901.chain_1465	2
scaffold_11	starts_in_intron	8771685	8771685	+	asmbl_5803	none	Trinity_GG_7666_c0_g1_i2,blat.proc3829877.chain_2397	2	STRG.13882.1,blat.proc3829877.chain_2396	2
scaffold_3	retained_intron	8162177	8162323	-	asmbl_38966	none	blat.proc3829887.chain_3142	1	blat.proc3829887.chain_3140	1
scaffold_1	alternate_exon	2791620	2791745	+	asmbl_1551	none	blat.proc3829871.chain_204	1	STRG.177.1,STRG.177.2,blat.proc3829871.chain_205	3
scaffold_5	starts_in_intron	6190005	6190005	+	asmbl_44071	none	Trinity_GG_3316_c0_g1_i1,blat.proc3829873.chain_2227	2	STRG.6025.1,STRG.6025.2,blat.proc3829873.chain_2222,blat.proc3829873.chain_2223	4
scaffold_12	alternate_exon	9229443	9229748	-	asmbl_7783	none	STRG.14910.1,blat.proc3829893.chain_3310	2	STRG.14910.3,blat.proc3829893.chain_3311	2
scaffold_13	spliced_intron	394206	394756	-	asmbl_9307,asmbl_9308,asmbl_9309,asmbl_9316,asmbl_9317	none	STRG.15428.1,STRG.15428.2,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i8,blat.proc3829895.chain_226,blat.proc3829895.chain_230,blat.proc3829895.chain_233	8	Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i25,Trinity_GG_25691_c0_g1_i7,blat.proc3829895.chain_223,blat.proc3829895.chain_229,blat.proc3829895.chain_232	6
scaffold_14	retained_exon	404838	405081	+	asmbl_11725	none	blat.proc3829879.chain_1463,blat.proc3829879.chain_1469	2	STRG.16722.2,STRG.16722.5,STRG.16722.6,blat.proc3829879.chain_1467,blat.proc3829879.chain_1470	5
scaffold_14	alt_acceptor	330806	330807	-	asmbl_12804,asmbl_12805	none	STRG.16713.1,Trinity_GG_26365_c0_g1_i4,blat.proc3829895.chain_1418	3	STRG.16713.2,Trinity_GG_26365_c0_g1_i2,Trinity_GG_26365_c0_g1_i3,blat.proc3829895.chain_1416,blat.proc3829895.chain_1417	5
scaffold_6	alternate_exon	6012484	6013226	-	asmbl_48386	none	STRG.7544.2,blat.proc3829889.chain_3612	2	STRG.7544.1	1
scaffold_3	ends_in_intron	17145511	17145511	+	asmbl_40618	none	Trinity_GG_2219_c0_g1_i2	1	STRG.3949.1,STRG.3949.3,blat.proc3829873.chain_352	3
scaffold_4	starts_in_intron	10447368	10447368	-	asmbl_41591	none	blat.proc3829889.chain_836	1	STRG.4795.1,STRG.4795.2,STRG.4795.3,blat.proc3829889.chain_832,blat.proc3829889.chain_834,blat.proc3829889.chain_835,blat.proc3829889.chain_837,blat.proc3829889.chain_839	8
scaffold_17	alt_donor	8421819	8421820	+	asmbl_18117	none	STRG.20451.1,Trinity_GG_11215_c0_g1_i1,blat.proc3829881.chain_1261	3	STRG.20451.2,Trinity_GG_11215_c0_g1_i2,blat.proc3829881.chain_1262	3
scaffold_19	retained_intron	5197616	5197930	+	asmbl_22164	none	STRG.22080.2,blat.proc3829881.chain_2933	2	STRG.22080.1,blat.proc3829881.chain_2934	2
scaffold_5	skipped_exon	14261743	14262734	+	asmbl_44586,asmbl_44588	none	STRG.6629.1,STRG.6629.2,blat.proc3829873.chain_2764,blat.proc3829873.chain_2767	4	blat.proc3829873.chain_2765,blat.proc3829873.chain_2769	2
scaffold_2	ends_in_intron	4583696	4583696	+	asmbl_24382	none	blat.proc3829871.chain_1912	1	STRG.1884.1,STRG.1884.2,STRG.1884.3	3
scaffold_5	retained_intron	11016319	11016635	-	asmbl_45780	none	STRG.6371.2,blat.proc3829889.chain_2475	2	STRG.6371.3	1
scaffold_13	alt_donor	13972002	13972003	+	asmbl_11397	none	blat.proc3829879.chain_1168	1	STRG.16435.3,Trinity_GG_9032_c1_g1_i1,blat.proc3829879.chain_1167,blat.proc3829879.chain_1169	4
scaffold_7	ends_in_intron	13890610	13890610	+	asmbl_51265	none	blat.proc3829875.chain_1943	1	STRG.9476.1,STRG.9476.2,STRG.9476.3,Trinity_GG_5267_c0_g1_i1,blat.proc3829875.chain_1942	5
scaffold_10	retained_intron	378745	378845	-	asmbl_2863,asmbl_2864,asmbl_2865,asmbl_2866	none	STRG.11913.2,STRG.11913.3,STRG.11913.4,STRG.11913.5,Trinity_GG_23607_c0_g1_i1,Trinity_GG_23607_c0_g1_i6,blat.proc3829893.chain_306,blat.proc3829893.chain_307	8	STRG.11913.1,blat.proc3829893.chain_302	2
scaffold_4	retained_exon	17129759	17129886	-	asmbl_42009	none	STRG.5313.2,Trinity_GG_19982_c0_g1_i3	2	STRG.5313.1,blat.proc3829889.chain_1385	2
scaffold_1	alternate_exon	5738303	5738504	+	asmbl_1770	none	blat.proc3829871.chain_371	1	STRG.382.2,blat.proc3829871.chain_372,blat.proc3829871.chain_373	3
scaffold_23	spliced_intron	9886338	9886445	+	asmbl_31099,asmbl_31101	none	STRG.26167.1,blat.proc3829883.chain_3074,blat.proc3829883.chain_3075	3	Trinity_GG_14461_c0_g1_i4,blat.proc3829883.chain_3073	2
scaffold_17	spliced_intron	6808283	6808729	+	asmbl_18006	none	STRG.20321.1,Trinity_GG_11120_c0_g1_i1,blat.proc3829881.chain_1092	3	STRG.20321.2,Trinity_GG_11120_c1_g1_i1,blat.proc3829881.chain_1093	3
scaffold_27	ends_in_intron	973369	973369	+	asmbl_35935	none	Trinity_GG_15816_c1_g1_i1,blat.proc3829885.chain_1623	2	STRG.28576.1,STRG.28576.2,Trinity_GG_15816_c0_g1_i2,Trinity_GG_15816_c0_g1_i5,Trinity_GG_15816_c0_g1_i6,Trinity_GG_15816_c0_g2_i1,blat.proc3829885.chain_1616,blat.proc3829885.chain_1617,blat.proc3829885.chain_1619	9
scaffold_11	skipped_exon	4332758	4334217	-	asmbl_6573,asmbl_6574	none	STRG.13521.1,blat.proc3829893.chain_1998,blat.proc3829893.chain_2001	3	STRG.13521.2	1
scaffold_23	retained_intron	4316512	4316611	+	asmbl_30802	none	Trinity_GG_14254_c0_g1_i4,blat.proc3829883.chain_2717	2	STRG.25826.1,blat.proc3829883.chain_2710,blat.proc3829883.chain_2716,blat.proc3829883.chain_2718	4
scaffold_2	alternate_exon	9140505	9140586	-	asmbl_23370,asmbl_23373	none	STRG.2160.1,blat.proc3829887.chain_2071	2	STRG.2160.2,blat.proc3829887.chain_2072	2
scaffold_24	alt_acceptor	2786682	2786683	-	asmbl_32792	none	STRG.26467.1,blat.proc3829899.chain_3548	2	STRG.26467.2,Trinity_GG_31816_c0_g1_i3,blat.proc3829899.chain_3549	3
scaffold_28	ends_in_intron	3243150	3243150	+	asmbl_38157	none	Trinity_GG_16345_c0_g1_i4	1	STRG.29522.1,STRG.29522.2	2
scaffold_2	starts_in_intron	13467310	13467310	+	asmbl_24889	none	Trinity_GG_1336_c0_g1_i1,blat.proc3829871.chain_2488	2	STRG.2369.1,blat.proc3829871.chain_2485,blat.proc3829871.chain_2486	3
scaffold_3	retained_exon	5951166	5951453	-	asmbl_38833,asmbl_38834	none	STRG.3255.1,STRG.3255.2,blat.proc3829887.chain_3044,blat.proc3829887.chain_3045	4	STRG.3255.5,STRG.3255.7,blat.proc3829887.chain_3047	3
scaffold_3	alt_acceptor	1448231	1448232	+	asmbl_39803	none	blat.proc3829871.chain_3048	1	STRG.2961.1,blat.proc3829871.chain_3047	2
scaffold_8	alternate_exon	6850332	6850409	-	asmbl_52886	none	STRG.10037.2	1	STRG.10037.1,Trinity_GG_22614_c0_g1_i1,blat.proc3829891.chain_2189	3
scaffold_9	starts_in_intron	7795259	7795259	+	asmbl_54122	none	blat.proc3829875.chain_3711	1	blat.proc3829875.chain_3706,blat.proc3829875.chain_3709,blat.proc3829875.chain_3710,blat.proc3829875.chain_3713,blat.proc3829875.chain_3714,blat.proc3829875.chain_3716	6
scaffold_11	starts_in_intron	8098394	8098394	+	asmbl_5689	none	Trinity_GG_7614_c0_g1_i4,blat.proc3829877.chain_2293	2	STRG.13810.1,STRG.13810.2,STRG.13810.3,Trinity_GG_7614_c0_g1_i1,Trinity_GG_7614_c0_g1_i3,Trinity_GG_7614_c0_g1_i6,blat.proc3829877.chain_2294,blat.proc3829877.chain_2295,blat.proc3829877.chain_2296	9
scaffold_3	ends_in_intron	13799231	13799231	-	asmbl_39253	none	Trinity_GG_19038_c0_g1_i4,blat.proc3829887.chain_3469	2	STRG.3721.1,STRG.3721.2,blat.proc3829887.chain_3468	3
scaffold_5	starts_in_intron	1063790	1063790	-	asmbl_45208	none	blat.proc3829889.chain_1795	1	STRG.5651.1,STRG.5651.2,blat.proc3829889.chain_1793,blat.proc3829889.chain_1794	4
scaffold_9	spliced_intron	16738922	16739205	-	asmbl_55584	none	STRG.11811.1,Trinity_GG_23557_c0_g1_i2,blat.proc3829893.chain_220	3	Trinity_GG_23557_c0_g1_i4,blat.proc3829893.chain_222	2
scaffold_15	ends_in_intron	15434823	15434823	-	asmbl_15801,asmbl_15802	none	blat.proc3829895.chain_3630,blat.proc3829895.chain_3635	2	STRG.18920.2,blat.proc3829895.chain_3631,blat.proc3829895.chain_3633	3
scaffold_13	ends_in_intron	2341013	2341013	+	asmbl_10577	none	blat.proc3829879.chain_163	1	STRG.15543.9	1
scaffold_12	alternate_exon	11329143	11329940	-	asmbl_7930	none	STRG.15055.1	1	STRG.15055.2	1
scaffold_17	alt_donor	2684428	2684429	+	asmbl_17809,asmbl_17810	none	STRG.20051.1,STRG.20051.2,blat.proc3829881.chain_882,blat.proc3829881.chain_883	4	blat.proc3829881.chain_884	1
scaffold_6	retained_exon	2744391	2744477	-	asmbl_48106	none	STRG.7260.2,blat.proc3829889.chain_3262	2	STRG.7260.1,Trinity_GG_21072_c0_g1_i1	2
scaffold_6	alternate_exon	5777556	5777634	-	asmbl_48372	none	STRG.7528.1,blat.proc3829889.chain_3597	2	STRG.7528.2,blat.proc3829889.chain_3596	2
scaffold_17	alternate_exon	12366139	12368474	-	asmbl_19373,asmbl_19374	none	STRG.20776.2,blat.proc3829897.chain_1640	2	STRG.20776.4,Trinity_GG_28651_c0_g2_i1	2
scaffold_28	spliced_intron	2724505	2724705	+	asmbl_38101,asmbl_38102,asmbl_38103	none	STRG.29438.1,STRG.29438.2,STRG.29438.3,blat.proc3829885.chain_2562,blat.proc3829885.chain_2563	5	blat.proc3829885.chain_2565	1
scaffold_6	spliced_intron	12911385	12911667	+	asmbl_47383	none	STRG.8045.2,blat.proc3829875.chain_340	2	STRG.8045.1,Trinity_GG_4355_c0_g1_i1,Trinity_GG_4355_c0_g1_i2,blat.proc3829875.chain_341,blat.proc3829875.chain_342	5
scaffold_12	alt_acceptor	6428071	6428072	-	asmbl_7664	none	STRG.14731.5,Trinity_GG_25243_c1_g1_i1,blat.proc3829893.chain_3152	3	STRG.14731.1,STRG.14731.2,STRG.14731.3,blat.proc3829893.chain_3149,blat.proc3829893.chain_3150,blat.proc3829893.chain_3151	6
scaffold_23	retained_exon	6988872	6988988	-	asmbl_31719	none	blat.proc3829899.chain_3074	1	STRG.26001.3	1
scaffold_14	starts_in_intron	1603512	1603512	-	asmbl_12881	none	STRG.16790.3,blat.proc3829895.chain_1494	2	STRG.16790.2,Trinity_GG_26418_c0_g1_i1,Trinity_GG_26418_c0_g1_i3,blat.proc3829895.chain_1495,blat.proc3829895.chain_1496	5
scaffold_21	retained_exon	1680688	1680761	+	asmbl_28374,asmbl_28375	none	STRG.23806.1,STRG.23806.2,Trinity_GG_13200_c0_g1_i1,blat.proc3829883.chain_967	4	STRG.23806.3	1
scaffold_7	starts_in_intron	15320340	15320340	-	asmbl_50189	none	blat.proc3829891.chain_1717	1	STRG.9535.1,blat.proc3829891.chain_1718	2
scaffold_1	retained_intron	175417	175492	-	asmbl_12	none	Trinity_GG_17028_c0_g1_i1,blat.proc3829885.chain_3686	2	STRG.15.1,STRG.15.2,Trinity_GG_17028_c0_g1_i4,Trinity_GG_17028_c0_g1_i5,blat.proc3829885.chain_3683,blat.proc3829885.chain_3685,blat.proc3829885.chain_3687,blat.proc3829885.chain_3688	8
scaffold_3	starts_in_intron	3727875	3727875	+	asmbl_39924	none	blat.proc3829871.chain_3242	1	STRG.3090.1,blat.proc3829871.chain_3241	2
scaffold_5	retained_intron	13316252	13316346	-	asmbl_45916,asmbl_45917,asmbl_45918	none	blat.proc3829889.chain_2544,blat.proc3829889.chain_2545,blat.proc3829889.chain_2546	3	STRG.6578.1,STRG.6578.2,blat.proc3829889.chain_2547	3
scaffold_9	skipped_exon	6866921	6867246	-	asmbl_55045	none	blat.proc3829891.chain_3331	1	STRG.11186.1,Trinity_GG_23216_c0_g1_i5,blat.proc3829891.chain_3333,blat.proc3829891.chain_3334	4
scaffold_8	alternate_exon	8180089	8180337	+	asmbl_51995	none	blat.proc3829875.chain_2574	1	STRG.10093.1,STRG.10093.2,STRG.10093.3,STRG.10093.4,blat.proc3829875.chain_2575	5
scaffold_8	alternate_exon	9868559	9868994	+	asmbl_52111	none	blat.proc3829875.chain_2698	1	STRG.10225.4,STRG.10225.6,blat.proc3829875.chain_2696	3
scaffold_10	alternate_exon	1431189	1432104	-	asmbl_2967	none	STRG.12007.3,blat.proc3829893.chain_404	2	STRG.12007.2	1
scaffold_5	spliced_intron	18713113	18713290	-	asmbl_46242	none	STRG.6990.2,Trinity_GG_20882_c0_g1_i1,blat.proc3829889.chain_2941	3	STRG.6990.1,Trinity_GG_20882_c0_g1_i3,blat.proc3829889.chain_2940	3
scaffold_1	spliced_intron	9031944	9032149	-	asmbl_519	none	STRG.600.1,Trinity_GG_17343_c0_g1_i1,blat.proc3829887.chain_515	3	Trinity_GG_17343_c0_g1_i2,blat.proc3829887.chain_516	2
scaffold_21	retained_intron	3112080	3112167	-	asmbl_27536	none	blat.proc3829899.chain_985	1	STRG.23925.1,blat.proc3829899.chain_983,blat.proc3829899.chain_984,blat.proc3829899.chain_986	4
scaffold_4	starts_in_intron	7392047	7392047	+	asmbl_42833	none	Trinity_GG_2549_c0_g1_i2,blat.proc3829873.chain_972	2	STRG.4590.1,blat.proc3829873.chain_973	2
scaffold_16	starts_in_intron	15223408	15223408	+	asmbl_17526	none	STRG.19866.4	1	STRG.19866.1,STRG.19866.2,STRG.19866.3,blat.proc3829881.chain_657	4
scaffold_13	alternate_exon	2658426	2658669	-	asmbl_9431	none	blat.proc3829895.chain_237	1	blat.proc3829895.chain_236	1
scaffold_17	retained_intron	7049932	7050209	+	asmbl_18022	none	blat.proc3829881.chain_1121	1	STRG.20358.2,blat.proc3829881.chain_1120	2
scaffold_13	starts_in_intron	11540405	11540405	+	asmbl_11257	none	Trinity_GG_8958_c0_g1_i2,blat.proc3829879.chain_1041	2	STRG.16290.1,blat.proc3829879.chain_1037,blat.proc3829879.chain_1038	3
scaffold_24	alt_acceptor	3656168	3656169	+	asmbl_32161,asmbl_32166,asmbl_32167	none	STRG.26528.2,STRG.26528.3,Trinity_GG_14654_c0_g1_i10,blat.proc3829883.chain_3402,blat.proc3829883.chain_3403,blat.proc3829883.chain_3405	6	STRG.26528.1,STRG.26528.4,STRG.26528.6,Trinity_GG_14654_c0_g1_i3,Trinity_GG_14654_c0_g1_i7,blat.proc3829883.chain_3404,blat.proc3829883.chain_3406,blat.proc3829883.chain_3407,blat.proc3829883.chain_3408	9
scaffold_9	alternate_exon	3676842	3676946	-	asmbl_54885,asmbl_54891	none	STRG.10971.1,blat.proc3829891.chain_3074,blat.proc3829891.chain_3084,blat.proc3829891.chain_3085	4	Trinity_GG_23073_c0_g2_i1,blat.proc3829891.chain_3086	2
scaffold_1	retained_exon	10414951	10415039	-	asmbl_596	none	STRG.680.3	1	STRG.680.2,blat.proc3829887.chain_608	2
scaffold_4	alt_donor	12629806	12629807	-	asmbl_41683	none	STRG.4901.3,blat.proc3829889.chain_896	2	STRG.4901.1,blat.proc3829889.chain_893,blat.proc3829889.chain_894	3
scaffold_8	alt_acceptor	10863199	10863200	-	asmbl_53119,asmbl_53120	none	STRG.10304.1,STRG.10304.3,blat.proc3829891.chain_2485	3	STRG.10304.2	1
scaffold_15	alt_acceptor	1588727	1588728	+	asmbl_13959	none	STRG.17949.1,blat.proc3829879.chain_2643	2	STRG.17949.2,blat.proc3829879.chain_2644	2
scaffold_10	alternate_exon	8327617	8327747	-	asmbl_3494	none	STRG.12584.1	1	STRG.12584.3	1
scaffold_6	skipped_exon	18916887	18917456	-	asmbl_49224	none	STRG.8553.1	1	STRG.8553.2,STRG.8553.3,blat.proc3829891.chain_869,blat.proc3829891.chain_870	4
scaffold_15	retained_exon	6957134	6957218	-	asmbl_15290,asmbl_15291	none	STRG.18291.1,blat.proc3829895.chain_3051,blat.proc3829895.chain_3053	3	STRG.18291.2,STRG.18291.3,blat.proc3829895.chain_3052,blat.proc3829895.chain_3054	4
scaffold_13	ends_in_intron	6622311	6622311	+	asmbl_10941	none	blat.proc3829879.chain_547	1	Trinity_GG_8717_c0_g1_i2,Trinity_GG_8717_c0_g1_i4,blat.proc3829879.chain_544,blat.proc3829879.chain_545	4
scaffold_5	retained_intron	10196215	10196313	-	asmbl_45703	none	blat.proc3829889.chain_2386	1	STRG.6312.1,blat.proc3829889.chain_2387,blat.proc3829889.chain_2388,blat.proc3829889.chain_2389,blat.proc3829889.chain_2393	5
scaffold_14	starts_in_intron	8208654	8208654	-	asmbl_13236	none	blat.proc3829895.chain_1908	1	STRG.17217.1,blat.proc3829895.chain_1909	2
scaffold_27	alternate_exon	3649871	3655685	-	asmbl_36868	none	STRG.28814.1,blat.proc3829901.chain_2006	2	STRG.28814.2,Trinity_GG_33152_c0_g1_i2,blat.proc3829901.chain_2007	3
scaffold_4	retained_exon	7033834	7033980	+	asmbl_42783	none	STRG.4538.2	1	STRG.4538.1,blat.proc3829873.chain_918,blat.proc3829873.chain_920	3
scaffold_4	starts_in_intron	5883673	5883673	-	asmbl_41383,asmbl_41386	none	STRG.4480.1,blat.proc3829889.chain_536,blat.proc3829889.chain_538	3	STRG.4480.2,blat.proc3829889.chain_537	2
scaffold_20	spliced_intron	11924753	11925165	+	asmbl_26256	none	STRG.23680.4	1	STRG.23680.1,blat.proc3829883.chain_819	2
scaffold_5	spliced_intron	10195750	10195849	-	asmbl_45702,asmbl_45703,asmbl_45704,asmbl_45706,asmbl_45708,asmbl_45709	none	STRG.6312.1,blat.proc3829889.chain_2386,blat.proc3829889.chain_2387,blat.proc3829889.chain_2388,blat.proc3829889.chain_2389,blat.proc3829889.chain_2391,blat.proc3829889.chain_2393	7	blat.proc3829889.chain_2394	1
scaffold_9	retained_intron	11793088	11794485	-	asmbl_55267,asmbl_55271	none	STRG.11484.4,blat.proc3829891.chain_3593	2	STRG.11484.2,STRG.11484.3,blat.proc3829891.chain_3591	3
scaffold_7	alt_acceptor	4915756	4915757	+	asmbl_50646	none	STRG.8828.3	1	STRG.8828.4	1
scaffold_1	alt_donor	13929526	13929527	-	asmbl_869	none	STRG.998.1	1	STRG.998.2	1
scaffold_20	starts_in_intron	865794	865794	+	asmbl_25547	none	blat.proc3829881.chain_3639	1	STRG.22784.1,blat.proc3829881.chain_3640	2
scaffold_6	alt_acceptor	8643353	8643354	+	asmbl_47103,asmbl_47106	none	STRG.7737.1,STRG.7737.2,blat.proc3829875.chain_105	3	STRG.7737.3,blat.proc3829875.chain_103	2
scaffold_13	alternate_exon	13973710	13975995	+	asmbl_11396,asmbl_11397,asmbl_11398	none	blat.proc3829879.chain_1167,blat.proc3829879.chain_1168,blat.proc3829879.chain_1169	3	STRG.16435.3,Trinity_GG_9032_c1_g1_i1	2
scaffold_17	ends_in_intron	12008095	12008095	+	asmbl_18375	none	blat.proc3829881.chain_1544	1	STRG.20717.1,blat.proc3829881.chain_1545	2
scaffold_18	alt_donor	3217969	3217970	-	asmbl_19791	none	STRG.21148.2,Trinity_GG_28812_c0_g1_i2,blat.proc3829897.chain_1961	3	STRG.21148.1,Trinity_GG_28812_c0_g1_i1,blat.proc3829897.chain_1960	3
scaffold_5	alt_donor	2235080	2235081	-	asmbl_45267	none	STRG.5750.1	1	STRG.5750.2	1
scaffold_3	ends_in_intron	14258040	14258040	+	asmbl_40465	none	Trinity_GG_2074_c0_g2_i1,blat.proc3829873.chain_107	2	STRG.3764.1,STRG.3764.2,blat.proc3829873.chain_104,blat.proc3829873.chain_105,blat.proc3829873.chain_106	5
scaffold_16	retained_intron	325094	325177	-	asmbl_16026	none	blat.proc3829897.chain_58	1	STRG.19019.1,STRG.19019.2,blat.proc3829897.chain_59,blat.proc3829897.chain_62	4
scaffold_22	alt_donor	4342442	4342443	+	asmbl_29273	none	STRG.24834.1,Trinity_GG_13728_c2_g1_i2,blat.proc3829883.chain_1867	3	STRG.24834.2,Trinity_GG_13728_c2_g1_i1,blat.proc3829883.chain_1866	3
scaffold_3	alt_acceptor	5916628	5916629	-	asmbl_38825	none	STRG.3246.2	1	STRG.3246.1,blat.proc3829887.chain_2922	2
scaffold_12	retained_intron	2721443	2721926	+	asmbl_8480	none	Trinity_GG_8024_c0_g2_i1,blat.proc3829877.chain_3022	2	Trinity_GG_8024_c0_g1_i5	1
scaffold_20	retained_intron	5886547	5886628	-	asmbl_26702	none	Trinity_GG_29937_c0_g1_i1,blat.proc3829899.chain_198	2	STRG.23178.1,blat.proc3829899.chain_197	2
scaffold_5	starts_in_intron	11652187	11652187	-	asmbl_45805	none	blat.proc3829889.chain_2510	1	STRG.6418.1,blat.proc3829889.chain_2511	2
scaffold_11	starts_in_intron	3716181	3716181	-	asmbl_6543	none	blat.proc3829893.chain_1929	1	STRG.13481.1,Trinity_GG_24555_c0_g2_i4	2
scaffold_26	starts_in_intron	9918799	9918799	-	asmbl_35072	none	blat.proc3829901.chain_1611	1	STRG.28506.1,STRG.28506.2,STRG.28506.3,Trinity_GG_32924_c0_g1_i4,blat.proc3829901.chain_1613	5
scaffold_5	spliced_intron	15513154	15513296	-	asmbl_46067,asmbl_46068	none	STRG.6739.1,STRG.6739.2,blat.proc3829889.chain_2757,blat.proc3829889.chain_2759	4	blat.proc3829889.chain_2758	1
scaffold_14	spliced_intron	218317	218775	-	asmbl_12787,asmbl_12788	none	STRG.16705.2,STRG.16705.4,blat.proc3829895.chain_1398	3	STRG.16705.1,STRG.16705.3,blat.proc3829895.chain_1395,blat.proc3829895.chain_1397,blat.proc3829895.chain_1399	5
scaffold_25	alternate_exon	3288450	3292204	-	asmbl_34105,asmbl_34106	none	STRG.27260.1,STRG.27260.3,Trinity_GG_32283_c0_g1_i1,blat.proc3829901.chain_576,blat.proc3829901.chain_581	5	STRG.27260.5,blat.proc3829901.chain_582	2
scaffold_15	spliced_intron	4231931	4232179	+	asmbl_14070,asmbl_14071,asmbl_14072,asmbl_14074,asmbl_14076	none	STRG.18160.1,STRG.18160.2,blat.proc3829879.chain_2806,blat.proc3829879.chain_2808,blat.proc3829879.chain_2810,blat.proc3829879.chain_2811,blat.proc3829879.chain_2814	7	blat.proc3829879.chain_2809,blat.proc3829879.chain_2813	2
scaffold_13	ends_in_intron	5707040	5707040	-	asmbl_9675	none	blat.proc3829895.chain_595	1	STRG.15859.1,STRG.15859.2,blat.proc3829895.chain_597,blat.proc3829895.chain_599	4
scaffold_1	ends_in_intron	2500795	2500795	+	asmbl_1538	none	Trinity_GG_98_c0_g1_i2,blat.proc3829871.chain_167	2	STRG.157.1,Trinity_GG_98_c0_g1_i1,blat.proc3829871.chain_166	3
scaffold_16	alt_donor	8027984	8027985	-	asmbl_16393	none	Trinity_GG_27922_c0_g2_i1,blat.proc3829897.chain_474	2	STRG.19429.1,STRG.19429.2,blat.proc3829897.chain_471	3
scaffold_18	alt_acceptor	7867645	7867646	+	asmbl_20825,asmbl_20833	none	Trinity_GG_11877_c0_g1_i6,blat.proc3829881.chain_2473,blat.proc3829881.chain_2476	3	STRG.21477.5,blat.proc3829881.chain_2470	2
scaffold_13	retained_intron	2338672	2340365	+	asmbl_10575,asmbl_10580	none	blat.proc3829879.chain_152,blat.proc3829879.chain_155	2	blat.proc3829879.chain_156,blat.proc3829879.chain_163	2
scaffold_21	skipped_exon	7724644	7727560	+	asmbl_28779	none	STRG.24301.2,blat.proc3829883.chain_1449	2	STRG.24301.1	1
scaffold_12	alternate_exon	15441074	15447452	-	asmbl_8224	none	STRG.15336.1,blat.proc3829895.chain_77	2	STRG.15336.2,Trinity_GG_25614_c0_g1_i2,blat.proc3829895.chain_74,blat.proc3829895.chain_75	4
scaffold_27	spliced_intron	4938413	4938601	+	asmbl_36282,asmbl_36283,asmbl_36285	none	STRG.28914.1,STRG.28914.2,STRG.28914.6,blat.proc3829885.chain_2065	4	STRG.28914.3,STRG.28914.4,STRG.28914.5,blat.proc3829885.chain_2066	4
scaffold_11	starts_in_intron	15178328	15178328	-	asmbl_7169	none	blat.proc3829893.chain_2702	1	STRG.14273.1,blat.proc3829893.chain_2703	2
scaffold_8	ends_in_intron	9921796	9921796	-	asmbl_53070	none	blat.proc3829891.chain_2428	1	STRG.10236.1,STRG.10236.2	2
scaffold_1	spliced_intron	6324338	6324422	+	asmbl_1818,asmbl_1820	none	STRG.426.1,blat.proc3829871.chain_478,blat.proc3829871.chain_479	3	blat.proc3829871.chain_477	1
scaffold_4	alt_donor	4827095	4827096	+	asmbl_42636	none	STRG.4372.2	1	STRG.4372.1,Trinity_GG_2436_c0_g1_i1,blat.proc3829873.chain_768	3
scaffold_1	retained_intron	12794976	12795080	-	asmbl_775	none	blat.proc3829887.chain_802	1	STRG.900.1,blat.proc3829887.chain_801	2
scaffold_20	ends_in_intron	6199401	6199401	-	asmbl_26745	none	blat.proc3829899.chain_243	1	STRG.23210.1,blat.proc3829899.chain_242	2
scaffold_8	spliced_intron	11854269	11855193	+	asmbl_52271	none	blat.proc3829875.chain_2980	1	STRG.10382.2,STRG.10382.4,blat.proc3829875.chain_2967,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2976,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978	10
scaffold_1	alternate_exon	9652588	9652970	-	asmbl_561	none	STRG.651.1,blat.proc3829887.chain_549	2	STRG.651.2,blat.proc3829887.chain_547	2
scaffold_19	retained_intron	11832215	11832284	+	asmbl_22533	none	STRG.22496.1,Trinity_GG_12455_c0_g1_i2,blat.proc3829881.chain_3462	3	Trinity_GG_12455_c0_g1_i1,blat.proc3829881.chain_3461	2
scaffold_5	alternate_exon	18704152	18704718	-	asmbl_46236	none	STRG.6989.2	1	STRG.6989.1	1
scaffold_20	ends_in_intron	5482439	5482439	-	asmbl_26684	none	blat.proc3829899.chain_184	1	STRG.23158.1,blat.proc3829899.chain_183	2
scaffold_3	spliced_intron	10305664	10306094	+	asmbl_40217,asmbl_40218,asmbl_40221	none	STRG.3466.1,STRG.3466.3,Trinity_GG_1968_c0_g2_i1,blat.proc3829871.chain_3655,blat.proc3829871.chain_3656	5	STRG.3466.2,Trinity_GG_1968_c0_g2_i3,blat.proc3829871.chain_3657	3
scaffold_19	alt_acceptor	6212923	6212924	+	asmbl_22201,asmbl_22203,asmbl_22204	none	STRG.22141.1,STRG.22141.2,STRG.22141.4,Trinity_GG_12238_c0_g1_i3,blat.proc3829881.chain_3087,blat.proc3829881.chain_3088,blat.proc3829881.chain_3090	7	STRG.22141.3,blat.proc3829881.chain_3089	2
scaffold_18	alternate_exon	1396048	1396093	-	asmbl_19653,asmbl_19656,asmbl_19657	none	Trinity_GG_28799_c0_g1_i5,blat.proc3829897.chain_1931,blat.proc3829897.chain_1935,blat.proc3829897.chain_1937	4	STRG.21014.1,STRG.21014.2,STRG.21014.3,blat.proc3829897.chain_1932,blat.proc3829897.chain_1933	5
scaffold_20	retained_intron	10384754	10384960	+	asmbl_26112	none	blat.proc3829883.chain_590	1	STRG.23569.5,Trinity_GG_12979_c0_g1_i2,blat.proc3829883.chain_594	3
scaffold_21	starts_in_intron	7508687	7508687	-	asmbl_27854	none	blat.proc3829899.chain_1281	1	STRG.24270.1,blat.proc3829899.chain_1282	2
scaffold_12	spliced_intron	14989527	14989630	-	asmbl_8156	none	STRG.15282.4	1	Trinity_GG_25571_c0_g1_i5,blat.proc3829893.chain_3741	2
scaffold_13	skipped_exon	11379416	11382289	-	asmbl_10045	none	STRG.16287.3,Trinity_GG_26140_c0_g1_i1,blat.proc3829895.chain_1028	3	STRG.16287.1,STRG.16287.2,STRG.16287.7,Trinity_GG_26140_c0_g1_i4,Trinity_GG_26140_c0_g1_i5,blat.proc3829895.chain_1024,blat.proc3829895.chain_1026,blat.proc3829895.chain_1034	8
scaffold_15	ends_in_intron	8620313	8620313	+	asmbl_14286,asmbl_14287	none	Trinity_GG_10092_c0_g1_i2,blat.proc3829879.chain_3013,blat.proc3829879.chain_3014	3	STRG.18401.1,STRG.18401.2,blat.proc3829879.chain_3012	3
scaffold_23	spliced_intron	7044875	7045050	-	asmbl_31731,asmbl_31732	none	STRG.26010.1,blat.proc3829899.chain_3117,blat.proc3829899.chain_3119	3	blat.proc3829899.chain_3120	1
scaffold_10	retained_intron	8329038	8329329	-	asmbl_3495	none	STRG.12584.2	1	STRG.12584.3	1
scaffold_27	starts_in_intron	5433006	5433006	-	asmbl_36965	none	blat.proc3829901.chain_2077	1	STRG.28942.1,blat.proc3829901.chain_2076,blat.proc3829901.chain_2078	3
scaffold_8	alt_acceptor	5742352	5742353	+	asmbl_51889	none	STRG.9987.1,blat.proc3829875.chain_2490	2	STRG.9987.2	1
scaffold_1	starts_in_intron	11132782	11132782	-	asmbl_618	none	blat.proc3829887.chain_568	1	STRG.732.1,blat.proc3829887.chain_567	2
scaffold_28	alt_donor	2267626	2267627	-	asmbl_37348	none	STRG.29380.2,blat.proc3829901.chain_2470	2	STRG.29380.1,STRG.29380.3,Trinity_GG_33458_c0_g1_i4,blat.proc3829901.chain_2467,blat.proc3829901.chain_2468,blat.proc3829901.chain_2469	6
scaffold_8	starts_in_intron	12728129	12728129	-	asmbl_53225	none	Trinity_GG_22810_c0_g1_i3,blat.proc3829891.chain_2563	2	STRG.10443.1,STRG.10443.2,blat.proc3829891.chain_2564,blat.proc3829891.chain_2565	4
scaffold_26	alternate_exon	2954123	2954979	-	asmbl_34733	none	STRG.27973.1,Trinity_GG_32695_c2_g1_i1,blat.proc3829901.chain_1230,blat.proc3829901.chain_1236	4	STRG.27973.2,STRG.27973.3,STRG.27973.4,blat.proc3829901.chain_1229	4
scaffold_13	starts_in_intron	360548	360548	-	asmbl_9286	none	Trinity_GG_25666_c0_g1_i17,blat.proc3829895.chain_164	2	STRG.15426.1,STRG.15426.2,STRG.15426.3,STRG.15426.4,STRG.15426.5,Trinity_GG_25666_c0_g1_i10,Trinity_GG_25666_c0_g1_i11,Trinity_GG_25666_c0_g1_i14,Trinity_GG_25666_c0_g1_i6,Trinity_GG_25666_c0_g1_i8,Trinity_GG_25666_c0_g2_i1,blat.proc3829895.chain_155,blat.proc3829895.chain_156,blat.proc3829895.chain_159,blat.proc3829895.chain_161,blat.proc3829895.chain_163,blat.proc3829895.chain_166	17
scaffold_6	skipped_exon	885515	886409	-	asmbl_48033	none	STRG.7153.2	1	STRG.7153.1,STRG.7153.3	2
scaffold_19	skipped_exon	857538	858547	+	asmbl_22019,asmbl_22022	none	STRG.21868.1,Trinity_GG_12075_c1_g1_i1,blat.proc3829881.chain_2795	3	STRG.21868.2,blat.proc3829881.chain_2793,blat.proc3829881.chain_2794	3
scaffold_5	alt_acceptor	1548524	1548525	-	asmbl_45248	none	STRG.5706.1,blat.proc3829889.chain_1819,blat.proc3829889.chain_1821,blat.proc3829901.chain_3397,blat.proc3829901.chain_3398	5	STRG.5706.2,STRG.5706.3	2
scaffold_1	spliced_intron	17725702	17726002	+	asmbl_2512,asmbl_2513,asmbl_2514	none	STRG.1239.1,Trinity_GG_733_c0_g1_i1,Trinity_GG_733_c0_g1_i2,Trinity_GG_733_c0_g1_i3,blat.proc3829871.chain_1301,blat.proc3829871.chain_1302,blat.proc3829871.chain_1303	7	STRG.1239.2	1
scaffold_18	ends_in_intron	7185150	7185150	+	asmbl_20745	none	Trinity_GG_11822_c0_g1_i2,blat.proc3829881.chain_2372	2	STRG.21414.1,STRG.21414.2,STRG.21414.3,Trinity_GG_11822_c0_g1_i1,blat.proc3829881.chain_2373	5
scaffold_25	alt_donor	2956352	2956353	-	asmbl_34063	none	STRG.27220.1,blat.proc3829901.chain_499	2	blat.proc3829901.chain_498	1
scaffold_2	alt_acceptor	1338713	1338714	-	asmbl_22867	none	blat.proc3829887.chain_1382	1	STRG.1597.1	1
scaffold_17	alt_donor	9485601	9485602	+	asmbl_18217,asmbl_18219,asmbl_18222	none	STRG.20558.1,STRG.20558.3,blat.proc3829881.chain_1326,blat.proc3829881.chain_1327,blat.proc3829881.chain_1330	5	STRG.20558.2,blat.proc3829881.chain_1329,blat.proc3829881.chain_1331	3
scaffold_2	alt_acceptor	17973529	17973530	+	asmbl_25242,asmbl_25245,asmbl_25246	none	STRG.2687.1,STRG.2687.2,blat.proc3829871.chain_2902,blat.proc3829871.chain_2903	4	blat.proc3829871.chain_2900,blat.proc3829871.chain_2901	2
scaffold_5	retained_intron	1162909	1162938	+	asmbl_43779	none	STRG.5660.2	1	STRG.5660.1	1
scaffold_21	spliced_intron	7367393	7367476	-	asmbl_27823,asmbl_27824	none	STRG.24244.1,STRG.24244.2,blat.proc3829899.chain_1316,blat.proc3829899.chain_1317	4	blat.proc3829899.chain_1314,blat.proc3829899.chain_1315	2
scaffold_16	alternate_exon	8643425	8646024	+	asmbl_17226,asmbl_17227,asmbl_17228,asmbl_17232	none	STRG.19479.1,STRG.19479.3,STRG.19479.4,STRG.19479.5,blat.proc3829881.chain_361,blat.proc3829881.chain_362	6	STRG.19479.2	1
scaffold_7	starts_in_intron	17811957	17811957	+	asmbl_51390	none	STRG.9620.2,blat.proc3829875.chain_2089	2	STRG.9620.1	1
scaffold_21	alt_acceptor	11903459	11903460	+	asmbl_28952	none	STRG.24629.1	1	STRG.24629.2	1
scaffold_10	alt_donor	7684958	7684959	+	asmbl_4577	none	STRG.12548.2,blat.proc3829877.chain_1167	2	blat.proc3829877.chain_1168	1
scaffold_23	alt_acceptor	2590648	2590649	-	asmbl_31460,asmbl_31461	none	STRG.25705.1,STRG.25705.2,blat.proc3829899.chain_2747,blat.proc3829899.chain_2749	4	STRG.25705.5,blat.proc3829899.chain_2748	2
scaffold_17	retained_exon	2354832	2358219	+	asmbl_17765,asmbl_17771	none	STRG.20017.1,blat.proc3829881.chain_852,blat.proc3829881.chain_853	3	STRG.20017.5	1
scaffold_13	alt_donor	15679041	15679042	+	asmbl_11508	none	STRG.16595.1	1	STRG.16595.2	1
scaffold_15	skipped_exon	7181904	7184176	-	asmbl_15296	none	STRG.18300.3,blat.proc3829895.chain_2963	2	STRG.18300.4,blat.proc3829895.chain_2962	2
scaffold_17	spliced_intron	14097321	14097576	-	asmbl_19454,asmbl_19456	none	STRG.20887.1,blat.proc3829897.chain_1689,blat.proc3829897.chain_1690	3	blat.proc3829897.chain_1688,blat.proc3829897.chain_1691	2
scaffold_11	ends_in_intron	3602245	3602245	-	asmbl_6536	none	Trinity_GG_24554_c0_g1_i3,blat.proc3829893.chain_1928	2	STRG.13479.1,STRG.13479.2,blat.proc3829893.chain_1926,blat.proc3829893.chain_1927	4
scaffold_25	spliced_intron	6253172	6253303	+	asmbl_33602,asmbl_33605	none	STRG.27492.1,blat.proc3829885.chain_518,blat.proc3829885.chain_520,blat.proc3829885.chain_521	4	Trinity_GG_15150_c0_g1_i3,blat.proc3829885.chain_517,blat.proc3829885.chain_519	3
scaffold_25	alternate_exon	9932461	9942299	-	asmbl_34499,asmbl_34500	none	STRG.27802.1,STRG.27802.2,Trinity_GG_32586_c0_g1_i1,blat.proc3829901.chain_1067	4	STRG.27802.3,blat.proc3829901.chain_1072	2
scaffold_13	alt_acceptor	3723373	3723374	+	asmbl_10706	none	STRG.15675.2,blat.proc3829879.chain_333	2	STRG.15675.1,blat.proc3829879.chain_334	2
scaffold_20	ends_in_intron	11940875	11940875	-	asmbl_27131	none	blat.proc3829899.chain_682	1	STRG.23682.1,blat.proc3829899.chain_681	2
scaffold_10	skipped_exon	4057467	4058495	-	asmbl_3167,asmbl_3168,asmbl_3170	none	STRG.12237.1,STRG.12237.3,STRG.12237.6,blat.proc3829893.chain_706,blat.proc3829893.chain_707	5	STRG.12237.2,STRG.12237.4,blat.proc3829893.chain_709,blat.proc3829893.chain_710	4
scaffold_26	alternate_exon	6351172	6351208	-	asmbl_34956	none	Trinity_GG_32794_c0_g1_i3,blat.proc3829901.chain_1405	2	STRG.28315.4	1
scaffold_22	alt_acceptor	17118	17119	+	asmbl_29086	none	STRG.24641.2	1	STRG.24641.1,Trinity_GG_13603_c0_g1_i1,blat.proc3829883.chain_1659	3
scaffold_20	retained_exon	1616257	1616378	-	asmbl_26520,asmbl_26521	none	STRG.22881.2,STRG.22881.4	2	STRG.22881.1	1
scaffold_17	spliced_intron	1592933	1593714	+	asmbl_17744	none	Trinity_GG_10947_c0_g1_i2,blat.proc3829881.chain_812	2	STRG.19981.1,Trinity_GG_10947_c0_g1_i1,blat.proc3829881.chain_811	3
scaffold_1	alt_acceptor	4273766	4273767	+	asmbl_1659	none	STRG.259.3	1	STRG.259.1,STRG.259.2,STRG.259.4,blat.proc3829871.chain_321	4
scaffold_12	starts_in_intron	2921110	2921110	-	asmbl_7466	none	blat.proc3829893.chain_2935	1	STRG.14515.1,STRG.14515.5,blat.proc3829893.chain_2936	3
scaffold_19	alt_acceptor	6469093	6469094	+	asmbl_22219	none	STRG.22160.2,blat.proc3829881.chain_3037	2	STRG.22160.1,blat.proc3829881.chain_3036	2
scaffold_22	alternate_exon	4287584	4287946	-	asmbl_30000	none	STRG.24837.6,Trinity_GG_30888_c2_g1_i1,blat.proc3829899.chain_1958	3	STRG.24837.3	1
scaffold_4	alt_acceptor	8806970	8806971	-	asmbl_41530	none	STRG.4692.2	1	STRG.4692.1	1
scaffold_13	spliced_intron	4602251	4602712	-	asmbl_9606	none	STRG.15781.1	1	STRG.15781.2,Trinity_GG_25880_c0_g1_i6,blat.proc3829895.chain_528,blat.proc3829895.chain_531	4
scaffold_18	alt_acceptor	12609003	12609004	-	asmbl_20185	none	STRG.21714.2,blat.proc3829897.chain_2527	2	STRG.21714.1	1
scaffold_16	alt_donor	1777027	1777028	+	asmbl_16881	none	Trinity_GG_10467_c0_g1_i3,blat.proc3829879.chain_3696	2	STRG.19095.1,STRG.19095.2,STRG.19095.3,Trinity_GG_10467_c0_g1_i1,Trinity_GG_10467_c0_g1_i2,blat.proc3829879.chain_3694,blat.proc3829879.chain_3695	7
scaffold_10	spliced_intron	715100	715709	-	asmbl_2904	none	STRG.11948.1,Trinity_GG_23680_c0_g1_i7,blat.proc3829893.chain_434	3	STRG.11948.2,Trinity_GG_23680_c0_g1_i4,Trinity_GG_23680_c0_g1_i6,blat.proc3829893.chain_435,blat.proc3829893.chain_436,blat.proc3829893.chain_438	6
scaffold_2	alt_acceptor	9123244	9123245	+	asmbl_24699	none	STRG.2159.1,Trinity_GG_1192_c0_g1_i1,blat.proc3829871.chain_2224	3	STRG.2159.2	1
scaffold_9	ends_in_intron	16738416	16738416	-	asmbl_55586	none	Trinity_GG_23557_c0_g1_i4,blat.proc3829893.chain_222	2	STRG.11811.1,STRG.11811.2,STRG.11811.3,Trinity_GG_23557_c0_g1_i2,Trinity_GG_23557_c0_g1_i6,blat.proc3829893.chain_219,blat.proc3829893.chain_220	7
scaffold_4	spliced_intron	19539841	19539875	-	asmbl_42202	none	blat.proc3829889.chain_1601	1	STRG.5538.2,Trinity_GG_20121_c0_g1_i2,blat.proc3829889.chain_1602	3
scaffold_7	alt_donor	3815245	3815246	+	asmbl_50580	none	Trinity_GG_4785_c0_g1_i2,blat.proc3829875.chain_1124	2	STRG.8764.1,blat.proc3829875.chain_1125	2
scaffold_16	ends_in_intron	8035360	8035360	+	asmbl_17164	none	STRG.19425.1	1	Trinity_GG_10637_c0_g1_i2,blat.proc3829881.chain_297	2
scaffold_9	retained_intron	16575103	16575191	+	asmbl_54583	none	STRG.11786.1,blat.proc3829877.chain_534	2	STRG.11786.2,blat.proc3829877.chain_536	2
scaffold_24	retained_intron	5945203	5947592	+	asmbl_32283	none	blat.proc3829883.chain_3535	1	STRG.26645.1,blat.proc3829883.chain_3537,blat.proc3829883.chain_3539,blat.proc3829883.chain_3542,blat.proc3829883.chain_3543,blat.proc3829883.chain_3544,blat.proc3829883.chain_3545,blat.proc3829883.chain_3547,blat.proc3829883.chain_3548,blat.proc3829883.chain_3549	10
scaffold_18	spliced_intron	824551	824807	+	asmbl_20354	none	blat.proc3829881.chain_1782	1	STRG.20996.2,Trinity_GG_11513_c0_g1_i7,blat.proc3829881.chain_1778,blat.proc3829881.chain_1780	4
scaffold_10	retained_intron	634820	635077	-	asmbl_2890	none	STRG.11933.3,Trinity_GG_23652_c0_g1_i2,blat.proc3829893.chain_379	3	STRG.11933.1,STRG.11933.2,STRG.11933.4,Trinity_GG_23652_c0_g1_i1,blat.proc3829893.chain_377,blat.proc3829893.chain_378,blat.proc3829893.chain_381	7
scaffold_8	alt_donor	7453210	7453211	-	asmbl_52901	none	STRG.10061.1,blat.proc3829891.chain_2201	2	STRG.10061.2,Trinity_GG_22618_c0_g1_i2,Trinity_GG_22618_c0_g1_i3,blat.proc3829891.chain_2199,blat.proc3829891.chain_2200	5
scaffold_5	alt_acceptor	7320502	7320503	+	asmbl_44152,asmbl_44154	none	STRG.6121.1,blat.proc3829873.chain_2277	2	STRG.6121.2	1
scaffold_2	alt_acceptor	6466104	6466105	+	asmbl_24497	none	blat.proc3829871.chain_2075	1	STRG.2012.1,STRG.2012.2,blat.proc3829871.chain_2072,blat.proc3829871.chain_2074	4
scaffold_27	alt_acceptor	9431797	9431798	-	asmbl_37094	none	STRG.29170.2	1	STRG.29170.1,STRG.29170.3,blat.proc3829901.chain_2275,blat.proc3829901.chain_2276	4
scaffold_15	alternate_exon	670912	688555	-	asmbl_14951	none	STRG.17917.1,Trinity_GG_27031_c1_g1_i1,blat.proc3829895.chain_2555,blat.proc3829895.chain_2556	4	blat.proc3829895.chain_2554	1
scaffold_2	spliced_intron	8148213	8148395	-	asmbl_23337	none	STRG.2102.1,Trinity_GG_18184_c0_g1_i1,blat.proc3829887.chain_2000	3	STRG.2102.2,Trinity_GG_18184_c0_g1_i2,blat.proc3829887.chain_2001	3
scaffold_6	starts_in_intron	5190334	5190334	+	asmbl_46863,asmbl_46868	none	STRG.7489.4,Trinity_GG_4091_c0_g1_i10,blat.proc3829873.chain_3587	3	STRG.7489.1,STRG.7489.2,STRG.7489.3,blat.proc3829873.chain_3581,blat.proc3829873.chain_3583,blat.proc3829873.chain_3585	6
scaffold_10	spliced_intron	8952261	8952966	+	asmbl_4624	none	STRG.12635.1,Trinity_GG_6915_c0_g1_i1,blat.proc3829877.chain_1120	3	blat.proc3829877.chain_1119	1
scaffold_8	alt_donor	8172761	8172762	+	asmbl_51988	none	STRG.10093.1	1	STRG.10093.2	1
scaffold_25	ends_in_intron	992709	992709	+	asmbl_33357	none	Trinity_GG_14954_c1_g1_i1	1	STRG.27140.1,STRG.27140.2,blat.proc3829885.chain_184	3
scaffold_8	alt_acceptor	18085071	18085072	-	asmbl_53511	none	STRG.10701.1,Trinity_GG_22907_c0_g1_i6,blat.proc3829891.chain_2756	3	STRG.10701.3,Trinity_GG_22907_c0_g1_i1,Trinity_GG_22907_c0_g1_i2,blat.proc3829891.chain_2754,blat.proc3829891.chain_2755	5
scaffold_28	alternate_exon	5230414	5230887	-	asmbl_37582,asmbl_37585	none	STRG.29650.2,Trinity_GG_33578_c0_g1_i9,blat.proc3829901.chain_2674	3	Trinity_GG_33578_c0_g1_i6,blat.proc3829901.chain_2675	2
scaffold_27	alt_acceptor	3024863	3024864	+	asmbl_36134	none	blat.proc3829885.chain_1780	1	STRG.28769.1,STRG.28769.2,blat.proc3829885.chain_1782	3
scaffold_14	retained_exon	8451918	8452010	-	asmbl_13299	none	Trinity_GG_26716_c0_g1_i2	1	Trinity_GG_26716_c0_g1_i1	1
scaffold_7	alt_donor	9788535	9788536	-	asmbl_49880	none	STRG.9160.1	1	STRG.9160.2	1
scaffold_20	retained_exon	12074890	12074997	-	asmbl_27140,asmbl_27142	none	STRG.23691.1,blat.proc3829899.chain_688,blat.proc3829899.chain_690	3	blat.proc3829899.chain_691	1
scaffold_18	retained_intron	7943323	7944083	-	asmbl_20023	none	STRG.21483.1,Trinity_GG_29025_c0_g1_i2,blat.proc3829897.chain_2325	3	STRG.21483.3,blat.proc3829897.chain_2326	2
scaffold_52	alt_acceptor	15133	15134	+	asmbl_46478,asmbl_46480	none	STRG.30039.1,blat.proc3829885.chain_3104,blat.proc3829885.chain_3105	3	STRG.30039.2,STRG.30039.3,blat.proc3829885.chain_3103	3
scaffold_17	skipped_exon	2355039	2357644	+	asmbl_17771	none	blat.proc3829881.chain_853	1	STRG.20017.1,STRG.20017.2,STRG.20017.4,STRG.20017.5,STRG.20017.6,STRG.20017.7,blat.proc3829881.chain_852	7
scaffold_10	alternate_exon	4050276	4050689	+	asmbl_4384	none	Trinity_GG_6793_c1_g1_i1,blat.proc3829877.chain_911	2	STRG.12236.2	1
scaffold_3	retained_exon	6218492	6218585	-	asmbl_38874	none	STRG.3276.2,blat.proc3829887.chain_2936	2	STRG.3276.1,blat.proc3829887.chain_2934,blat.proc3829887.chain_2935	3
scaffold_16	retained_exon	744376	744435	-	asmbl_16066,asmbl_16070	none	STRG.19044.1,blat.proc3829897.chain_10,blat.proc3829897.chain_13	3	STRG.19044.2,blat.proc3829897.chain_11	2
scaffold_14	retained_intron	1715347	1715448	-	asmbl_12891	none	Trinity_GG_26421_c0_g1_i1,blat.proc3829895.chain_1502	2	STRG.16794.1,Trinity_GG_26421_c0_g1_i3,blat.proc3829895.chain_1503	3
scaffold_6	spliced_intron	7173897	7174059	+	asmbl_46988,asmbl_46989,asmbl_46990,asmbl_46991,asmbl_46992,asmbl_46993	none	STRG.7621.1,STRG.7621.2,STRG.7621.3,STRG.7621.4,blat.proc3829873.chain_3736,blat.proc3829873.chain_3739	6	blat.proc3829873.chain_3737	1
scaffold_1	alternate_exon	5963373	5963470	+	asmbl_1796,asmbl_1797,asmbl_1798	none	STRG.396.2,STRG.396.3,Trinity_GG_257_c0_g1_i4,blat.proc3829871.chain_456	4	STRG.396.1,blat.proc3829871.chain_454	2
scaffold_4	alt_acceptor	16133581	16133582	-	asmbl_41890	none	STRG.5182.2,blat.proc3829889.chain_1220	2	STRG.5182.3	1
scaffold_21	alternate_exon	8135342	8139076	-	asmbl_27911,asmbl_27912,asmbl_27914	none	blat.proc3829899.chain_1382,blat.proc3829899.chain_1383,blat.proc3829899.chain_1387	3	STRG.24334.5,blat.proc3829899.chain_1385	2
scaffold_4	alt_acceptor	18292737	18292738	+	asmbl_43435,asmbl_43436,asmbl_43438,asmbl_43439	none	STRG.5424.2,STRG.5424.3,STRG.5424.4,STRG.5424.6,blat.proc3829873.chain_1665,blat.proc3829873.chain_1666	6	STRG.5424.1,STRG.5424.5,blat.proc3829873.chain_1664	3
scaffold_21	retained_exon	9925221	9925389	-	asmbl_28011,asmbl_28015	none	STRG.24446.1,STRG.24446.4,blat.proc3829899.chain_1513	3	STRG.24446.5	1
scaffold_8	starts_in_intron	17794460	17794460	+	asmbl_52493,asmbl_52494	none	Trinity_GG_5881_c0_g1_i3,Trinity_GG_5881_c0_g1_i6,blat.proc3829875.chain_3074,blat.proc3829875.chain_3077	4	STRG.10684.1,blat.proc3829875.chain_3073,blat.proc3829875.chain_3076	3
scaffold_16	spliced_intron	433763	434014	-	asmbl_16047	none	blat.proc3829897.chain_20	1	blat.proc3829897.chain_17,blat.proc3829897.chain_18,blat.proc3829897.chain_19,blat.proc3829897.chain_23,blat.proc3829897.chain_24	5
scaffold_25	spliced_intron	6253628	6253853	+	asmbl_33602,asmbl_33604	none	STRG.27492.1,blat.proc3829885.chain_517,blat.proc3829885.chain_518	3	Trinity_GG_15150_c0_g1_i3,blat.proc3829885.chain_519,blat.proc3829885.chain_521	3
scaffold_9	retained_intron	6396892	6397036	-	asmbl_55016	none	blat.proc3829891.chain_3251	1	STRG.11162.2	1
scaffold_9	skipped_exon	2798884	2801078	+	asmbl_53844	none	STRG.10912.2,Trinity_GG_6054_c0_g1_i7,blat.proc3829875.chain_3369	3	blat.proc3829875.chain_3367	1
scaffold_10	alt_donor	337701	337702	-	asmbl_2855	none	STRG.11909.4	1	STRG.11909.1,STRG.11909.2,STRG.11909.3,Trinity_GG_23632_c0_g1_i4,blat.proc3829893.chain_340,blat.proc3829893.chain_341,blat.proc3829893.chain_342,blat.proc3829893.chain_343	8
scaffold_8	skipped_exon	5760911	5762372	+	asmbl_51894	none	STRG.9986.1	1	Trinity_GG_5561_c0_g1_i1,blat.proc3829875.chain_2489	2
scaffold_19	alternate_exon	9451327	9454602	+	asmbl_22396,asmbl_22397	none	STRG.22365.1,STRG.22365.3,blat.proc3829881.chain_3306	3	Trinity_GG_12370_c1_g1_i1,blat.proc3829881.chain_3307	2
scaffold_17	retained_intron	2720917	2721238	+	asmbl_17822	none	Trinity_GG_10966_c0_g1_i1,blat.proc3829881.chain_844	2	STRG.20056.1,STRG.20056.2,Trinity_GG_10966_c0_g1_i2,blat.proc3829881.chain_843	4
scaffold_5	alt_acceptor	2536551	2536552	+	asmbl_43836,asmbl_43838	none	STRG.5769.1,STRG.5769.4,blat.proc3829873.chain_1954,blat.proc3829873.chain_1955	4	STRG.5769.3,blat.proc3829873.chain_1953	2
scaffold_2	spliced_intron	16405690	16405769	-	asmbl_23699	none	STRG.2581.1,blat.proc3829887.chain_2424	2	blat.proc3829887.chain_2423	1
scaffold_16	alt_donor	8143959	8143960	+	asmbl_17181	none	STRG.19444.2	1	STRG.19444.1,blat.proc3829881.chain_247	2
scaffold_2	alt_acceptor	15490689	15490690	+	asmbl_25078,asmbl_25080	none	STRG.2499.3,blat.proc3829871.chain_2699	2	STRG.2499.1,STRG.2499.2,STRG.2499.4,blat.proc3829871.chain_2698,blat.proc3829871.chain_2700	5
scaffold_11	spliced_intron	11639424	11639532	+	asmbl_5946,asmbl_5949,asmbl_5952,asmbl_5953	none	STRG.14080.1,blat.proc3829877.chain_2568,blat.proc3829877.chain_2570,blat.proc3829877.chain_2573,blat.proc3829877.chain_2574	5	blat.proc3829877.chain_2571,blat.proc3829877.chain_2572	2
scaffold_12	skipped_exon	3008296	3009494	-	asmbl_7480	none	STRG.14536.2	1	STRG.14536.1,blat.proc3829893.chain_2902	2
scaffold_27	starts_in_intron	134285	134285	-	asmbl_36590	none	STRG.28527.5,blat.proc3829901.chain_1643	2	STRG.28527.2,STRG.28527.3,STRG.28527.4,blat.proc3829901.chain_1646	4
scaffold_28	alternate_exon	1705882	1709950	-	asmbl_37334	none	STRG.29347.2	1	STRG.29347.3	1
scaffold_14	alternate_exon	5891676	5891810	-	asmbl_13080	none	STRG.17035.2,blat.proc3829895.chain_1715	2	STRG.17035.1	1
scaffold_21	alt_acceptor	5958486	5958487	-	asmbl_27734,asmbl_27736	none	STRG.24113.1,blat.proc3829899.chain_1203	2	blat.proc3829899.chain_1204	1
scaffold_16	retained_intron	10441689	10441843	+	asmbl_17332	none	Trinity_GG_10746_c0_g1_i2,blat.proc3829881.chain_487	2	STRG.19601.1,Trinity_GG_10746_c0_g1_i1,Trinity_GG_10746_c0_g1_i3,blat.proc3829881.chain_486	4
scaffold_6	starts_in_intron	879508	879508	-	asmbl_48028	none	blat.proc3829889.chain_3146	1	STRG.7145.1,blat.proc3829889.chain_3147	2
scaffold_1	alt_acceptor	14615305	14615306	+	asmbl_2383	none	STRG.1059.1,blat.proc3829871.chain_1068	2	STRG.1059.2	1
scaffold_27	skipped_exon	1774540	1775914	+	asmbl_35996,asmbl_35998	none	STRG.28648.1,Trinity_GG_15863_c0_g1_i1,Trinity_GG_15863_c0_g1_i2	3	STRG.28648.2	1
scaffold_16	alternate_exon	14482740	14485511	+	asmbl_17485	none	blat.proc3829881.chain_701	1	blat.proc3829881.chain_702	1
scaffold_4	spliced_intron	3237335	3237423	-	asmbl_41166	none	STRG.4247.3	1	Trinity_GG_19386_c0_g1_i6,blat.proc3829889.chain_369,blat.proc3829889.chain_371	3
scaffold_18	spliced_intron	632566	632852	+	asmbl_20336	none	STRG.20993.1,blat.proc3829881.chain_1871	2	STRG.20993.2,blat.proc3829881.chain_1870	2
scaffold_6	alternate_exon	17188669	17189014	-	asmbl_49115,asmbl_49117	none	STRG.8422.1,Trinity_GG_21805_c0_g1_i1,Trinity_GG_21805_c0_g1_i2,blat.proc3829891.chain_725,blat.proc3829891.chain_726	5	STRG.8422.2	1
scaffold_19	skipped_exon	12337564	12338070	+	asmbl_22594	none	STRG.22552.2,blat.proc3829881.chain_3499	2	STRG.22552.1,blat.proc3829881.chain_3501,blat.proc3829881.chain_3502	3
scaffold_18	retained_intron	2050891	2050959	-	asmbl_19729	none	Trinity_GG_28833_c0_g1_i2,blat.proc3829897.chain_1992	2	STRG.21084.3	1
scaffold_2	retained_exon	6761643	6761771	-	asmbl_23258	none	STRG.2030.2,blat.proc3829887.chain_1920	2	STRG.2030.3,blat.proc3829887.chain_1918	2
scaffold_5	spliced_intron	4683007	4683535	-	asmbl_45373,asmbl_45379,asmbl_45381,asmbl_45382	none	blat.proc3829889.chain_2027,blat.proc3829889.chain_2028,blat.proc3829889.chain_2032,blat.proc3829889.chain_2033	4	STRG.5919.2,blat.proc3829889.chain_2025	2
scaffold_15	retained_intron	13325003	13325106	+	asmbl_14574,asmbl_14577,asmbl_14578,asmbl_14580,asmbl_14582	none	Trinity_GG_10264_c0_g1_i6,blat.proc3829879.chain_3296,blat.proc3829879.chain_3298,blat.proc3829879.chain_3299,blat.proc3829879.chain_3302,blat.proc3829879.chain_3304	6	Trinity_GG_10264_c0_g1_i4,blat.proc3829879.chain_3297	2
scaffold_2	retained_intron	7468981	7469051	-	asmbl_23285,asmbl_23288,asmbl_23289	none	STRG.2075.2,blat.proc3829887.chain_1892,blat.proc3829887.chain_1898	3	STRG.2075.3,STRG.2075.4,Trinity_GG_18127_c0_g1_i18,Trinity_GG_18127_c0_g1_i23,blat.proc3829887.chain_1889,blat.proc3829887.chain_1893	6
scaffold_5	starts_in_intron	7028731	7028731	+	asmbl_44137,asmbl_44138	none	STRG.6108.3,STRG.6108.4	2	STRG.6108.1,STRG.6108.2	2
scaffold_11	spliced_intron	8398703	8399332	+	asmbl_5730	none	blat.proc3829877.chain_2344	1	STRG.13845.2,Trinity_GG_7638_c0_g1_i6,blat.proc3829877.chain_2341,blat.proc3829877.chain_2342,blat.proc3829877.chain_2343,blat.proc3829877.chain_2346	6
scaffold_17	skipped_exon	2355039	2355866	+	asmbl_17767	none	STRG.20017.6	1	STRG.20017.2,STRG.20017.4	2
scaffold_24	alt_donor	5883579	5883580	-	asmbl_32896,asmbl_32899,asmbl_32900	none	STRG.26634.3,STRG.26634.5,blat.proc3829899.chain_3711	3	STRG.26634.1,STRG.26634.2,STRG.26634.4,blat.proc3829899.chain_3710,blat.proc3829899.chain_3712,blat.proc3829899.chain_3713	6
scaffold_2	spliced_intron	15272586	15272673	+	asmbl_25032,asmbl_25033,asmbl_25035,asmbl_25036,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25043	none	STRG.2481.1,blat.proc3829871.chain_2524,blat.proc3829871.chain_2526,blat.proc3829871.chain_2528,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2535,blat.proc3829871.chain_2536,blat.proc3829871.chain_2538	9	blat.proc3829871.chain_2525,blat.proc3829871.chain_2527,blat.proc3829871.chain_2531,blat.proc3829871.chain_2537	4
scaffold_23	alt_donor	2588164	2588165	-	asmbl_31461	none	STRG.25705.2,blat.proc3829899.chain_2749	2	STRG.25705.5	1
scaffold_3	starts_in_intron	13160385	13160385	+	asmbl_40382	none	Trinity_GG_2042_c0_g1_i2,blat.proc3829873.chain_38	2	STRG.3678.1,STRG.3678.2,blat.proc3829873.chain_39	3
scaffold_5	spliced_intron	15462675	15462768	-	asmbl_46057,asmbl_46060	none	STRG.6726.1,STRG.6726.2,blat.proc3829889.chain_2790	3	blat.proc3829889.chain_2791	1
scaffold_14	spliced_intron	1069783	1069875	+	asmbl_11767,asmbl_11768,asmbl_11770,asmbl_11773	none	STRG.16754.1,STRG.16754.2,blat.proc3829879.chain_1440,blat.proc3829879.chain_1442	4	blat.proc3829879.chain_1439	1
scaffold_2	alternate_exon	18990661	18990849	-	asmbl_23857	none	STRG.2780.2	1	STRG.2780.1	1
scaffold_3	spliced_intron	8167061	8167567	-	asmbl_38975	none	blat.proc3829887.chain_3136	1	blat.proc3829887.chain_3134	1
scaffold_1	spliced_intron	4389591	4389688	-	asmbl_193	none	STRG.268.1,blat.proc3829887.chain_150	2	Trinity_GG_17153_c0_g1_i1,blat.proc3829887.chain_151	2
scaffold_14	spliced_intron	8278439	8279308	+	asmbl_12196	none	STRG.17235.3	1	STRG.17235.1,STRG.17235.4,blat.proc3829879.chain_1989,blat.proc3829879.chain_1990	4
scaffold_8	alt_acceptor	11976916	11976917	-	asmbl_53174	none	STRG.10388.2,Trinity_GG_22750_c0_g1_i1,blat.proc3829891.chain_2456	3	STRG.10388.3	1
scaffold_17	starts_in_intron	829871	829871	-	asmbl_18696	none	blat.proc3829897.chain_883	1	STRG.19918.1,blat.proc3829897.chain_882	2
scaffold_15	retained_intron	4493750	4493846	+	asmbl_14086,asmbl_14087	none	STRG.18165.2,blat.proc3829879.chain_2750	2	STRG.18165.1,blat.proc3829879.chain_2746,blat.proc3829879.chain_2747,blat.proc3829879.chain_2748,blat.proc3829879.chain_2749	5
scaffold_5	spliced_intron	15521839	15522081	-	asmbl_46067	none	STRG.6739.2,blat.proc3829889.chain_2757	2	STRG.6739.1,blat.proc3829889.chain_2759	2
scaffold_8	retained_intron	7986635	7986847	-	asmbl_52933,asmbl_52935	none	Trinity_GG_22656_c0_g1_i6,blat.proc3829891.chain_2263,blat.proc3829891.chain_2264	3	STRG.10092.1,STRG.10092.2,Trinity_GG_22656_c0_g1_i5,blat.proc3829891.chain_2261,blat.proc3829891.chain_2262,blat.proc3829891.chain_2265	6
scaffold_13	alt_donor	9952981	9952982	+	asmbl_11202	none	STRG.16222.2	1	STRG.16222.1,blat.proc3829879.chain_916	2
scaffold_20	starts_in_intron	11411700	11411700	+	asmbl_26197	none	Trinity_GG_13082_c0_g1_i1,blat.proc3829883.chain_772	2	STRG.23632.1,Trinity_GG_13082_c0_g1_i2,blat.proc3829883.chain_773	3
scaffold_10	starts_in_intron	4912075	4912075	-	asmbl_3235	none	STRG.12303.1,blat.proc3829893.chain_783	2	STRG.12303.2	1
scaffold_5	starts_in_intron	14204168	14204168	-	asmbl_45971	none	blat.proc3829889.chain_2660	1	STRG.6620.1,STRG.6620.2	2
scaffold_9	alternate_exon	10904381	10904398	+	asmbl_54292	none	STRG.11390.1	1	blat.proc3829877.chain_173	1
scaffold_8	ends_in_intron	4240964	4240964	-	asmbl_52763	none	blat.proc3829891.chain_1989	1	STRG.9900.2,blat.proc3829891.chain_1988,blat.proc3829891.chain_1990	3
scaffold_14	spliced_intron	3418982	3419012	+	asmbl_11922	none	STRG.16912.2	1	STRG.16912.1,Trinity_GG_9261_c0_g1_i1	2
scaffold_26	ends_in_intron	7774420	7774420	+	asmbl_35671	none	blat.proc3829885.chain_1357	1	blat.proc3829885.chain_1359	1
scaffold_2	spliced_intron	8059384	8059478	-	asmbl_23330	none	STRG.2094.2,blat.proc3829887.chain_1997	2	STRG.2094.1,Trinity_GG_18182_c0_g1_i1,blat.proc3829887.chain_1998	3
scaffold_11	retained_intron	5525403	5525484	+	asmbl_5530	none	blat.proc3829877.chain_2108	1	STRG.13614.1,blat.proc3829877.chain_2109	2
scaffold_2	alt_donor	7470999	7471000	-	asmbl_23283,asmbl_23284,asmbl_23286,asmbl_23289	none	STRG.2075.3,STRG.2075.4,Trinity_GG_18127_c0_g1_i18,Trinity_GG_18127_c0_g1_i8,blat.proc3829887.chain_1892,blat.proc3829887.chain_1893,blat.proc3829887.chain_1895	7	blat.proc3829887.chain_1896	1
scaffold_16	ends_in_intron	8026757	8026757	-	asmbl_16396	none	blat.proc3829897.chain_473	1	STRG.19429.1,STRG.19429.2,blat.proc3829897.chain_471	3
scaffold_18	spliced_intron	5563424	5563617	-	asmbl_19890,asmbl_19892	none	STRG.21297.1,Trinity_GG_28951_c1_g1_i5,Trinity_GG_28951_c1_g1_i6,blat.proc3829897.chain_2181,blat.proc3829897.chain_2185	5	STRG.21297.2,Trinity_GG_28951_c1_g1_i8,blat.proc3829897.chain_2184	3
scaffold_8	retained_exon	2438698	2438809	-	asmbl_52704	none	STRG.9785.1,blat.proc3829891.chain_1981	2	STRG.9785.2,blat.proc3829891.chain_1980	2
scaffold_8	alt_donor	11263941	11263942	-	asmbl_53136	none	STRG.10328.1	1	STRG.10328.2,blat.proc3829891.chain_2473	2
scaffold_10	retained_intron	5823736	5824133	+	asmbl_4488	none	STRG.12397.1,blat.proc3829877.chain_1049	2	STRG.12397.3,Trinity_GG_6884_c0_g1_i2,blat.proc3829877.chain_1048	3
scaffold_10	retained_intron	6447456	6447566	-	asmbl_3374,asmbl_3376	none	blat.proc3829893.chain_931,blat.proc3829893.chain_933	2	blat.proc3829893.chain_932	1
scaffold_11	alt_donor	4686594	4686595	-	asmbl_6587	none	STRG.13547.5,blat.proc3829893.chain_2032	2	STRG.13547.1,STRG.13547.2,STRG.13547.3,blat.proc3829893.chain_2029,blat.proc3829893.chain_2031	5
scaffold_13	alternate_exon	15510812	15510867	+	asmbl_11493	none	STRG.16580.3	1	STRG.16580.2	1
scaffold_26	alternate_exon	2955125	2955191	-	asmbl_34734,asmbl_34735,asmbl_34736	none	STRG.27973.2,STRG.27973.3,STRG.27973.4,blat.proc3829901.chain_1229	4	STRG.27973.1,blat.proc3829901.chain_1230	2
scaffold_28	alt_donor	4580997	4580998	-	asmbl_37542	none	blat.proc3829901.chain_2739	1	STRG.29613.1,STRG.29613.2,blat.proc3829901.chain_2738,blat.proc3829901.chain_2740	4
scaffold_16	alt_donor	11297157	11297158	+	asmbl_17374,asmbl_17375	none	STRG.19649.1,STRG.19649.2,blat.proc3829881.chain_537	3	STRG.19649.3	1
scaffold_14	starts_in_intron	9191431	9191431	+	asmbl_12256	none	blat.proc3829879.chain_2041	1	STRG.17305.1,blat.proc3829879.chain_2038,blat.proc3829879.chain_2040	3
scaffold_12	alt_acceptor	3803784	3803785	+	asmbl_8532	none	STRG.14574.3,blat.proc3829877.chain_3095	2	STRG.14574.2	1
scaffold_18	retained_intron	9258671	9259564	-	asmbl_20092	none	STRG.21559.2,Trinity_GG_29070_c0_g1_i2,blat.proc3829897.chain_2411	3	STRG.21559.4	1
scaffold_25	alt_acceptor	2089080	2089081	-	asmbl_34046	none	STRG.27196.1	1	STRG.27196.2,blat.proc3829901.chain_540	2
scaffold_21	retained_intron	8000621	8001304	-	asmbl_27901	none	STRG.24325.4,blat.proc3829899.chain_1428	2	STRG.24325.3,blat.proc3829899.chain_1427	2
scaffold_26	retained_intron	9853517	9853606	+	asmbl_35801,asmbl_35805,asmbl_35806,asmbl_35809,asmbl_35811,asmbl_35814,asmbl_35817	none	STRG.28526.5,blat.proc3829885.chain_1556,blat.proc3829885.chain_1557,blat.proc3829885.chain_1560,blat.proc3829885.chain_1562,blat.proc3829885.chain_1563,blat.proc3829885.chain_1566,blat.proc3829885.chain_1567	8	STRG.28526.1,STRG.28526.2,STRG.28526.3,blat.proc3829885.chain_1558,blat.proc3829885.chain_1559,blat.proc3829885.chain_1561,blat.proc3829885.chain_1564,blat.proc3829885.chain_1565	8
scaffold_1	retained_intron	39649	39790	-	asmbl_6	none	blat.proc3829885.chain_3729	1	STRG.19.1,STRG.19.2,STRG.19.3,blat.proc3829885.chain_3731,blat.proc3829885.chain_3732	5
scaffold_11	alternate_exon	6256305	6265266	+	asmbl_5587,asmbl_5589,asmbl_5590	none	STRG.13670.1,STRG.13670.2,blat.proc3829877.chain_2180,blat.proc3829877.chain_2181	4	Trinity_GG_7547_c0_g1_i9,blat.proc3829877.chain_2183	2
scaffold_22	alt_donor	8824079	8824080	+	asmbl_29579	none	STRG.25223.4	1	STRG.25223.2	1
scaffold_24	alt_acceptor	2465446	2465447	-	asmbl_32779,asmbl_32780	none	STRG.26455.1,STRG.26455.3	2	STRG.26455.2,blat.proc3829899.chain_3524,blat.proc3829899.chain_3525	3
scaffold_2	spliced_intron	899038	899115	+	asmbl_24165,asmbl_24166,asmbl_24167	none	STRG.1568.1,STRG.1568.2,Trinity_GG_900_c0_g1_i4,blat.proc3829871.chain_1642,blat.proc3829871.chain_1644	5	Trinity_GG_900_c0_g1_i3,Trinity_GG_900_c0_g1_i5,Trinity_GG_900_c0_g1_i6,blat.proc3829871.chain_1640,blat.proc3829871.chain_1643	5
scaffold_20	starts_in_intron	10514666	10514666	-	asmbl_27033	none	Trinity_GG_30119_c0_g1_i1,blat.proc3829899.chain_523	2	STRG.23576.1,STRG.23576.2,blat.proc3829899.chain_520,blat.proc3829899.chain_522	4
scaffold_13	starts_in_intron	3098995	3098995	-	asmbl_9477	none	blat.proc3829895.chain_332	1	STRG.15604.1,STRG.15604.2,blat.proc3829895.chain_333	3
scaffold_14	alt_acceptor	7436807	7436808	-	asmbl_13184	none	blat.proc3829895.chain_1843	1	blat.proc3829895.chain_1844	1
scaffold_6	retained_exon	12520880	12521077	-	asmbl_48748	none	STRG.8002.1,blat.proc3829891.chain_302	2	STRG.8002.3	1
scaffold_4	retained_intron	19591656	19591710	-	asmbl_42211	none	STRG.5545.1	1	blat.proc3829889.chain_1636	1
scaffold_14	spliced_intron	15565892	15565918	+	asmbl_12607	none	STRG.17784.2	1	STRG.17784.1	1
scaffold_1	spliced_intron	12754534	12756067	+	asmbl_2236	none	STRG.893.3,Trinity_GG_528_c0_g1_i1,blat.proc3829871.chain_951	3	STRG.893.1,Trinity_GG_528_c0_g1_i3,blat.proc3829871.chain_952	3
scaffold_11	spliced_intron	3697980	3698259	+	asmbl_5417	none	STRG.13477.2	1	Trinity_GG_7399_c0_g1_i1,blat.proc3829877.chain_1951	2
scaffold_18	starts_in_intron	4072289	4072289	-	asmbl_19825	none	blat.proc3829897.chain_2094	1	STRG.21193.1,STRG.21193.2,blat.proc3829897.chain_2095	3
scaffold_10	starts_in_intron	930169	930169	+	asmbl_4168	none	Trinity_GG_6615_c0_g1_i1,blat.proc3829877.chain_603	2	STRG.11961.1,Trinity_GG_6615_c0_g1_i3,blat.proc3829877.chain_602	3
scaffold_19	retained_exon	8182278	8182286	+	asmbl_22303	none	blat.proc3829881.chain_3128	1	STRG.22257.1	1
scaffold_4	spliced_intron	4113203	4113283	-	asmbl_41222,asmbl_41224,asmbl_41225	none	STRG.4314.1,blat.proc3829889.chain_373,blat.proc3829889.chain_375,blat.proc3829889.chain_376	4	blat.proc3829889.chain_378	1
scaffold_21	alt_acceptor	2267952	2267953	+	asmbl_28393	none	STRG.23835.1,blat.proc3829883.chain_930	2	STRG.23835.2	1
scaffold_15	starts_in_intron	3144679	3144679	-	asmbl_15085	none	blat.proc3829895.chain_2723	1	STRG.18084.1,blat.proc3829895.chain_2724,blat.proc3829895.chain_2725	3
scaffold_15	spliced_intron	8039747	8039835	-	asmbl_15347	none	STRG.18369.3,Trinity_GG_27305_c0_g1_i3,blat.proc3829895.chain_3070	3	STRG.18369.2,Trinity_GG_27305_c0_g1_i5,Trinity_GG_27305_c0_g1_i6,blat.proc3829895.chain_3068,blat.proc3829895.chain_3071	5
scaffold_5	retained_intron	19145546	19145630	-	asmbl_46271	none	Trinity_GG_20933_c0_g1_i1,blat.proc3829889.chain_3028	2	STRG.7015.1,STRG.7015.2,blat.proc3829889.chain_3029	3
scaffold_17	alt_donor	936345	936346	+	asmbl_17706,asmbl_17707	none	STRG.19921.1,STRG.19921.2,blat.proc3829881.chain_772,blat.proc3829881.chain_773	4	STRG.19921.3	1
scaffold_21	ends_in_intron	10505761	10505761	-	asmbl_28080	none	Trinity_GG_30718_c0_g1_i1,blat.proc3829899.chain_1656	2	blat.proc3829899.chain_1655	1
scaffold_25	starts_in_intron	9561024	9561024	-	asmbl_34480,asmbl_34483	none	blat.proc3829901.chain_1035,blat.proc3829901.chain_1037	2	STRG.27753.1,blat.proc3829901.chain_1036	2
scaffold_7	ends_in_intron	13506637	13506637	+	asmbl_51232	none	blat.proc3829875.chain_1922	1	STRG.9447.1,blat.proc3829875.chain_1921	2
scaffold_13	retained_exon	6047140	6047202	-	asmbl_9726	none	STRG.15900.4,blat.proc3829895.chain_629	2	STRG.15900.2,blat.proc3829895.chain_628,blat.proc3829895.chain_630	3
scaffold_15	starts_in_intron	8589730	8589730	+	asmbl_14282	none	Trinity_GG_10087_c0_g1_i3,blat.proc3829879.chain_3003	2	STRG.18395.2	1
scaffold_7	ends_in_intron	10710391	10710391	+	asmbl_51024	none	Trinity_GG_5138_c0_g1_i2,blat.proc3829875.chain_1703	2	STRG.9238.1,STRG.9238.2,blat.proc3829875.chain_1704	3
scaffold_1555	alternate_exon	18	478	-	asmbl_15980	none	STRG.30598.2	1	STRG.30598.4	1
scaffold_13	ends_in_intron	4082591	4082591	+	asmbl_10743	none	blat.proc3829879.chain_430	1	STRG.15720.1,blat.proc3829879.chain_431	2
scaffold_15	spliced_intron	15906139	15906230	-	asmbl_15822,asmbl_15824,asmbl_15825,asmbl_15826,asmbl_15827	none	STRG.18963.1,Trinity_GG_27666_c0_g1_i1,Trinity_GG_27666_c0_g1_i3,Trinity_GG_27666_c0_g1_i4,Trinity_GG_27666_c0_g1_i5,Trinity_GG_27666_c0_g1_i9,blat.proc3829895.chain_3733,blat.proc3829895.chain_3734,blat.proc3829895.chain_3735,blat.proc3829895.chain_3736,blat.proc3829895.chain_3737	11	Trinity_GG_27666_c0_g1_i8,blat.proc3829895.chain_3732	2
scaffold_7	ends_in_intron	7468094	7468094	+	asmbl_50811	none	STRG.8992.1,blat.proc3829875.chain_1440	2	STRG.8992.2,blat.proc3829875.chain_1441	2
scaffold_18	ends_in_intron	8883093	8883093	-	asmbl_20072	none	Trinity_GG_29008_c1_g1_i1,blat.proc3829897.chain_2289	2	STRG.21540.2	1
scaffold_17	retained_exon	12170856	12170949	+	asmbl_18392	none	STRG.20737.2,Trinity_GG_11355_c0_g1_i1,blat.proc3829881.chain_1530	3	STRG.20737.1,blat.proc3829881.chain_1531	2
scaffold_6	alternate_exon	12631512	12633966	+	asmbl_47362	none	STRG.8015.1	1	STRG.8015.3,Trinity_GG_4352_c0_g1_i3,blat.proc3829875.chain_333	3
scaffold_2	retained_exon	3758310	3758515	-	asmbl_23021	none	STRG.1811.1,blat.proc3829887.chain_1646	2	blat.proc3829887.chain_1647	1
scaffold_8	alternate_exon	6809265	6809345	-	asmbl_52882	none	blat.proc3829891.chain_2194	1	STRG.10035.2,blat.proc3829891.chain_2193	2
scaffold_9	alt_acceptor	650434	650435	+	asmbl_53765	none	STRG.10787.4	1	STRG.10787.1,STRG.10787.2,blat.proc3829875.chain_3294	3
scaffold_15	ends_in_intron	13321008	13321008	+	asmbl_14576	none	Trinity_GG_10264_c0_g1_i11,blat.proc3829879.chain_3295	2	STRG.18763.1,Trinity_GG_10264_c0_g1_i2,Trinity_GG_10264_c0_g1_i4,Trinity_GG_10264_c0_g1_i6,blat.proc3829879.chain_3296,blat.proc3829879.chain_3297,blat.proc3829879.chain_3298,blat.proc3829879.chain_3299,blat.proc3829879.chain_3300,blat.proc3829879.chain_3301,blat.proc3829879.chain_3302,blat.proc3829879.chain_3303,blat.proc3829879.chain_3304	13
scaffold_5	skipped_exon	13801958	13803444	-	asmbl_45938	none	STRG.6592.1,blat.proc3829889.chain_2653	2	STRG.6592.2,blat.proc3829889.chain_2652,blat.proc3829889.chain_2655	3
scaffold_6	starts_in_intron	3052622	3052622	+	asmbl_46742	none	Trinity_GG_4015_c0_g2_i1,blat.proc3829873.chain_3449	2	STRG.7308.1,blat.proc3829873.chain_3438,blat.proc3829873.chain_3439	3
scaffold_20	alt_donor	10986547	10986548	+	asmbl_26160	none	STRG.23608.3	1	STRG.23608.1,Trinity_GG_13068_c0_g1_i1,Trinity_GG_13068_c0_g1_i4,blat.proc3829883.chain_750,blat.proc3829883.chain_751	5
scaffold_28	starts_in_intron	2596072	2596072	-	asmbl_37387	none	STRG.29415.2	1	STRG.29415.1,blat.proc3829901.chain_2543	2
scaffold_1	ends_in_intron	1617139	1617139	+	asmbl_1497	none	STRG.102.4,Trinity_GG_85_c0_g1_i5,blat.proc3829871.chain_148	3	STRG.102.2,Trinity_GG_85_c0_g1_i1,Trinity_GG_85_c0_g1_i3,blat.proc3829871.chain_144,blat.proc3829871.chain_145	5
scaffold_13	starts_in_intron	6758144	6758144	+	asmbl_10955	none	STRG.15952.2,Trinity_GG_8761_c0_g1_i2,blat.proc3829879.chain_634	3	STRG.15952.1,blat.proc3829879.chain_632,blat.proc3829879.chain_633	3
scaffold_7	alternate_exon	16149826	16149851	+	asmbl_51350	none	STRG.9568.3	1	STRG.9568.1,STRG.9568.2,Trinity_GG_5276_c0_g1_i1,Trinity_GG_5276_c0_g1_i2,blat.proc3829875.chain_1960,blat.proc3829875.chain_1961	6
scaffold_2	spliced_intron	14560511	14560687	+	asmbl_24982,asmbl_24984,asmbl_24985,asmbl_24986,asmbl_24987,asmbl_24989	none	STRG.2454.1,STRG.2454.2,STRG.2454.3,STRG.2454.4,blat.proc3829871.chain_2565,blat.proc3829871.chain_2570	6	Trinity_GG_1360_c0_g2_i1,blat.proc3829871.chain_2571	2
scaffold_15	starts_in_intron	13253382	13253382	+	asmbl_14566	none	blat.proc3829879.chain_3361	1	STRG.18756.1,blat.proc3829879.chain_3360	2
scaffold_11	alt_donor	11937882	11937883	-	asmbl_7019,asmbl_7021,asmbl_7022,asmbl_7023	none	STRG.14160.2,STRG.14160.3,STRG.14160.4,STRG.14160.5	4	STRG.14160.1	1
scaffold_7	skipped_exon	1429518	1430722	-	asmbl_49539,asmbl_49541	none	STRG.8631.1,blat.proc3829891.chain_1002,blat.proc3829891.chain_1003	3	STRG.8631.2,blat.proc3829891.chain_1004	2
scaffold_21	spliced_intron	7426114	7426200	-	asmbl_27830,asmbl_27831	none	STRG.24262.1,blat.proc3829899.chain_1344	2	blat.proc3829899.chain_1347	1
scaffold_20	starts_in_intron	1628376	1628376	-	asmbl_26526	none	blat.proc3829897.chain_3666	1	STRG.22879.1	1
scaffold_21	alt_acceptor	4781531	4781532	+	asmbl_28555	none	STRG.24011.2	1	STRG.24011.1,Trinity_GG_13309_c0_g1_i1,blat.proc3829883.chain_1168	3
scaffold_643	alt_acceptor	1606	1607	-	asmbl_49429	none	STRG.30389.2	1	STRG.30389.1	1
scaffold_4	starts_in_intron	3383541	3383541	+	asmbl_42520	none	STRG.4269.3	1	STRG.4269.1,STRG.4269.2,blat.proc3829873.chain_584,blat.proc3829873.chain_585,blat.proc3829873.chain_586,blat.proc3829873.chain_587	6
scaffold_22	starts_in_intron	7003348	7003348	+	asmbl_29440	none	Trinity_GG_13802_c0_g1_i2	1	STRG.25013.1,blat.proc3829883.chain_2014	2
scaffold_5	ends_in_intron	4722330	4722330	-	asmbl_45390	none	Trinity_GG_20345_c0_g1_i2,blat.proc3829889.chain_1987	2	STRG.5921.1,blat.proc3829889.chain_1986	2
scaffold_28	ends_in_intron	9422080	9422080	-	asmbl_37839	none	blat.proc3829901.chain_3071	1	STRG.29951.1,blat.proc3829901.chain_3072	2
scaffold_5	alternate_exon	5737158	5738649	+	asmbl_44027	none	STRG.5984.4	1	STRG.5984.5,blat.proc3829873.chain_2046	2
scaffold_2	spliced_intron	14361444	14361522	+	asmbl_24949,asmbl_24952	none	STRG.2435.1,blat.proc3829871.chain_2604,blat.proc3829871.chain_2605	3	STRG.2435.2,blat.proc3829871.chain_2606	2
scaffold_20	alternate_exon	5437909	5437964	+	asmbl_25767	none	STRG.23146.2,Trinity_GG_12772_c0_g1_i3,blat.proc3829883.chain_269	3	STRG.23146.1,Trinity_GG_12772_c0_g1_i1,blat.proc3829883.chain_268	3
scaffold_2	starts_in_intron	15637489	15637489	-	asmbl_23656	none	blat.proc3829887.chain_2344	1	STRG.2511.1,blat.proc3829887.chain_2345	2
scaffold_8	spliced_intron	11272951	11273303	+	asmbl_52200	none	Trinity_GG_5734_c0_g1_i1,blat.proc3829875.chain_2818	2	STRG.10338.2	1
scaffold_8	spliced_intron	9811870	9812023	+	asmbl_52091	none	STRG.10216.2,blat.proc3829875.chain_2718	2	STRG.10216.1,Trinity_GG_5680_c1_g1_i2	2
scaffold_9	alt_donor	8395341	8395342	+	asmbl_54155,asmbl_54157	none	STRG.11249.1,STRG.11249.4,blat.proc3829877.chain_17,blat.proc3829877.chain_18	4	STRG.11249.3,STRG.11249.5,blat.proc3829877.chain_20	3
scaffold_1	alternate_exon	12748638	12748713	-	asmbl_759,asmbl_760	none	STRG.892.5,Trinity_GG_17462_c0_g1_i4,blat.proc3829887.chain_757	3	STRG.892.1,blat.proc3829887.chain_754	2
scaffold_3	ends_in_intron	14661566	14661566	+	asmbl_40502	none	STRG.3807.1	1	STRG.3807.2	1
scaffold_4	alt_acceptor	12606727	12606728	+	asmbl_43065	none	STRG.4899.1,blat.proc3829873.chain_1230	2	STRG.4899.2,blat.proc3829873.chain_1229	2
scaffold_2	starts_in_intron	6512905	6512905	-	asmbl_23236	none	blat.proc3829887.chain_1932	1	STRG.2013.1,STRG.2013.2,STRG.2013.3,Trinity_GG_18148_c0_g1_i2,blat.proc3829887.chain_1931,blat.proc3829887.chain_1933	6
scaffold_12	alt_donor	16413004	16413005	+	asmbl_9143	none	STRG.15380.2,blat.proc3829879.chain_45	2	STRG.15380.1,blat.proc3829879.chain_46	2
scaffold_5	skipped_exon	19029108	19031503	-	asmbl_46259,asmbl_46260	none	STRG.7018.3,STRG.7018.4,blat.proc3829889.chain_3006,blat.proc3829889.chain_3009	4	blat.proc3829889.chain_3008	1
scaffold_5	alt_acceptor	15111371	15111372	-	asmbl_46028	none	STRG.6691.3	1	STRG.6691.1,STRG.6691.2,Trinity_GG_20764_c0_g1_i1,Trinity_GG_20764_c0_g1_i3,blat.proc3829889.chain_2732,blat.proc3829889.chain_2733	6
scaffold_2	alt_donor	2300465	2300466	-	asmbl_22911	none	blat.proc3829887.chain_1489	1	STRG.1667.3,blat.proc3829887.chain_1487	2
scaffold_11	ends_in_intron	13302461	13302461	+	asmbl_6028	none	blat.proc3829877.chain_2681	1	STRG.14188.1,blat.proc3829877.chain_2682	2
scaffold_27	starts_in_intron	2818111	2818111	+	asmbl_36078	none	Trinity_GG_15908_c0_g1_i3,blat.proc3829885.chain_1798	2	STRG.28742.1,blat.proc3829885.chain_1799,blat.proc3829885.chain_1801	3
scaffold_4	retained_exon	12641759	12641861	-	asmbl_41686	none	STRG.4904.1,Trinity_GG_19743_c0_g1_i1,blat.proc3829889.chain_962	3	STRG.4904.2,Trinity_GG_19743_c0_g1_i2,blat.proc3829889.chain_963	3
scaffold_13	spliced_intron	1013360	1013456	+	asmbl_10489	none	STRG.15460.2	1	STRG.15460.1,Trinity_GG_8499_c0_g1_i1,blat.proc3829879.chain_138	3
scaffold_1	retained_intron	14216887	14216983	+	asmbl_2332,asmbl_2334	none	STRG.1007.1,blat.proc3829871.chain_1090,blat.proc3829871.chain_1091	3	blat.proc3829871.chain_1089	1
scaffold_4	starts_in_intron	4095213	4095213	+	asmbl_42552,asmbl_42553	none	blat.proc3829873.chain_632,blat.proc3829873.chain_634	2	STRG.4313.1,STRG.4313.2,STRG.4313.3,STRG.4313.4,blat.proc3829873.chain_631,blat.proc3829873.chain_635,blat.proc3829873.chain_636	7
scaffold_12	alt_donor	135073	135074	+	asmbl_8403	none	STRG.14421.2	1	blat.proc3829877.chain_2914	1
scaffold_1	spliced_intron	5542906	5543635	-	asmbl_274	none	STRG.344.1,blat.proc3829887.chain_228	2	Trinity_GG_17203_c1_g1_i1,blat.proc3829887.chain_229	2
scaffold_23	starts_in_intron	4119695	4119695	+	asmbl_30787	none	blat.proc3829883.chain_2691	1	STRG.25806.1	1
scaffold_8	ends_in_intron	14430863	14430863	+	asmbl_52364	none	blat.proc3829875.chain_3044	1	STRG.10524.1,STRG.10524.2,blat.proc3829875.chain_3041,blat.proc3829875.chain_3042	4
scaffold_18	alt_acceptor	7661993	7661994	+	asmbl_20794,asmbl_20796	none	STRG.21461.2,STRG.21461.3	2	STRG.21461.1,STRG.21461.4	2
scaffold_9	retained_intron	16570389	16570696	+	asmbl_54573,asmbl_54574,asmbl_54575,asmbl_54576,asmbl_54577,asmbl_54578,asmbl_54580	none	STRG.11798.2,Trinity_GG_6586_c0_g1_i10,Trinity_GG_6586_c0_g1_i14,Trinity_GG_6586_c0_g1_i15,Trinity_GG_6586_c0_g1_i21,Trinity_GG_6586_c0_g1_i23,Trinity_GG_6586_c0_g1_i5,blat.proc3829877.chain_552,blat.proc3829877.chain_554,blat.proc3829877.chain_555,blat.proc3829877.chain_556,blat.proc3829877.chain_557,blat.proc3829877.chain_558	13	STRG.11798.1,Trinity_GG_6586_c0_g1_i6,blat.proc3829877.chain_551,blat.proc3829877.chain_553	4
scaffold_4	spliced_intron	1969732	1969832	+	asmbl_42472	none	STRG.4210.2,blat.proc3829873.chain_572	2	STRG.4210.1,blat.proc3829873.chain_571	2
scaffold_2	starts_in_intron	9302576	9302576	-	asmbl_23394	none	Trinity_GG_18239_c0_g1_i2,blat.proc3829887.chain_2095	2	STRG.2179.1,blat.proc3829887.chain_2096	2
scaffold_26	starts_in_intron	5894442	5894442	-	asmbl_34917	none	blat.proc3829901.chain_1394	1	STRG.28281.1,STRG.28281.2,STRG.28281.3,Trinity_GG_32791_c0_g1_i6,blat.proc3829901.chain_1392,blat.proc3829901.chain_1395,blat.proc3829901.chain_1396,blat.proc3829901.chain_1397	8
scaffold_11	alternate_exon	9724432	9724606	+	asmbl_5851	none	STRG.13976.2,Trinity_GG_7707_c0_g1_i1,blat.proc3829877.chain_2468	3	STRG.13976.1,blat.proc3829877.chain_2467	2
scaffold_6	alternate_exon	2930152	2930399	-	asmbl_48140	none	STRG.7290.3,blat.proc3829889.chain_3235	2	STRG.7290.2,blat.proc3829889.chain_3236,blat.proc3829889.chain_3237	3
scaffold_26	alternate_exon	422390	425874	+	asmbl_35208,asmbl_35212	none	STRG.27850.1,blat.proc3829885.chain_853,blat.proc3829885.chain_854	3	STRG.27851.1	1
scaffold_15	spliced_intron	15434376	15435512	-	asmbl_15799,asmbl_15800	none	STRG.18920.2,blat.proc3829895.chain_3631,blat.proc3829895.chain_3633	3	STRG.18920.1,STRG.18920.3,Trinity_GG_27606_c0_g1_i4,Trinity_GG_27606_c0_g1_i5,blat.proc3829895.chain_3632,blat.proc3829895.chain_3634	6
scaffold_4	ends_in_intron	2780783	2780783	-	asmbl_41148	none	Trinity_GG_19369_c0_g1_i2,blat.proc3829889.chain_331	2	STRG.4228.1,blat.proc3829889.chain_332	2
scaffold_11	retained_intron	13593204	13593300	-	asmbl_7124,asmbl_7126	none	STRG.14205.1,Trinity_GG_24961_c0_g1_i2,blat.proc3829893.chain_2656,blat.proc3829893.chain_2657	4	blat.proc3829893.chain_2655	1
scaffold_25	spliced_intron	7220043	7220502	-	asmbl_34362	none	STRG.27562.1,blat.proc3829901.chain_878,blat.proc3829901.chain_879	3	blat.proc3829901.chain_880	1
scaffold_27	alt_donor	980854	980855	+	asmbl_35939	none	STRG.28575.1,Trinity_GG_15813_c0_g1_i1,blat.proc3829885.chain_1610	3	STRG.28575.2	1
scaffold_21	alt_acceptor	5253859	5253860	-	asmbl_27653	none	STRG.24045.1,blat.proc3829899.chain_1115	2	STRG.24045.2	1
scaffold_6	retained_intron	8460732	8460860	+	asmbl_47065	none	blat.proc3829875.chain_74	1	STRG.7708.1,STRG.7708.2,STRG.7708.3,STRG.7708.4,blat.proc3829875.chain_72,blat.proc3829875.chain_73	6
scaffold_12	alternate_exon	3803789	3804075	+	asmbl_8533	none	STRG.14574.2	1	STRG.14574.1,blat.proc3829877.chain_3096,blat.proc3829877.chain_3097	3
scaffold_4	alt_donor	14571069	14571070	+	asmbl_43221	none	STRG.5074.2,blat.proc3829873.chain_1400	2	STRG.5074.1,blat.proc3829873.chain_1399	2
scaffold_2	alt_donor	18914581	18914582	-	asmbl_23849	none	STRG.2765.1,Trinity_GG_18545_c0_g1_i4,blat.proc3829887.chain_2598	3	STRG.2765.2,Trinity_GG_18545_c0_g1_i3,blat.proc3829887.chain_2600	3
scaffold_19	starts_in_intron	8418069	8418069	+	asmbl_22330	none	STRG.22292.2,Trinity_GG_12307_c0_g1_i1,blat.proc3829881.chain_3202	3	STRG.22292.1,blat.proc3829881.chain_3201	2
scaffold_4	spliced_intron	4414352	4414502	+	asmbl_42592	none	blat.proc3829873.chain_693	1	STRG.4344.3,blat.proc3829873.chain_684,blat.proc3829873.chain_694	3
scaffold_8	starts_in_intron	17954199	17954199	-	asmbl_53504	none	blat.proc3829891.chain_2853	1	STRG.10699.1,blat.proc3829891.chain_2854	2
scaffold_4	spliced_intron	17121837	17122239	-	asmbl_42006	none	STRG.5310.4	1	STRG.5310.1,STRG.5310.2,STRG.5310.3,STRG.5310.5,Trinity_GG_19980_c0_g1_i1,blat.proc3829889.chain_1382	6
scaffold_27	ends_in_intron	7260512	7260512	+	asmbl_36395	none	blat.proc3829885.chain_2204	1	blat.proc3829885.chain_2203	1
scaffold_24	alternate_exon	4319255	4319675	+	asmbl_32202	none	Trinity_GG_14664_c0_g1_i1,blat.proc3829883.chain_3428	2	STRG.26578.3	1
scaffold_8	retained_intron	9112241	9112368	-	asmbl_52994	none	blat.proc3829891.chain_2331	1	STRG.10159.1,STRG.10159.2,blat.proc3829891.chain_2332,blat.proc3829891.chain_2333	4
scaffold_1	retained_intron	3679992	3680248	+	asmbl_1625	none	blat.proc3829871.chain_294	1	STRG.237.2,blat.proc3829871.chain_291	2
scaffold_17	alt_acceptor	13972254	13972255	-	asmbl_19443,asmbl_19444,asmbl_19445	none	STRG.20876.1,STRG.20876.4,blat.proc3829897.chain_1764,blat.proc3829897.chain_1766	4	STRG.20876.2	1
scaffold_4	retained_intron	17568123	17568235	-	asmbl_42037	none	blat.proc3829889.chain_1334	1	STRG.5346.3,STRG.5346.4	2
scaffold_2	starts_in_intron	13826961	13826961	-	asmbl_23541	none	blat.proc3829887.chain_2268	1	STRG.2377.1,blat.proc3829887.chain_2267	2
scaffold_3	spliced_intron	192086	192185	+	asmbl_39765	none	STRG.2890.1	1	Trinity_GG_1638_c0_g1_i2,blat.proc3829871.chain_3062,blat.proc3829871.chain_3063	3
scaffold_4	alt_acceptor	14626620	14626621	+	asmbl_43236	none	STRG.5089.1,blat.proc3829873.chain_1420	2	STRG.5089.2	1
scaffold_14	retained_exon	10425045	10425086	-	asmbl_13405	none	STRG.17377.1,Trinity_GG_26764_c0_g1_i2,blat.proc3829895.chain_2112	3	STRG.17377.2	1
scaffold_15	spliced_intron	14323219	14324365	-	asmbl_15728,asmbl_15735	none	Trinity_GG_27599_c0_g1_i7,blat.proc3829895.chain_3600,blat.proc3829895.chain_3603	3	Trinity_GG_27599_c0_g1_i11	1
scaffold_2	spliced_intron	17656069	17656578	-	asmbl_23748	none	blat.proc3829887.chain_2490	1	STRG.2658.1,blat.proc3829887.chain_2489	2
scaffold_16	retained_intron	8549399	8549668	+	asmbl_17198	none	Trinity_GG_10666_c0_g1_i2,blat.proc3829881.chain_338	2	STRG.19467.1,blat.proc3829881.chain_337	2
scaffold_24	alt_donor	879746	879747	+	asmbl_32062	none	STRG.26351.2	1	STRG.26351.3	1
scaffold_23	alt_donor	5579054	5579055	+	asmbl_30876,asmbl_30878,asmbl_30879	none	STRG.25909.2,blat.proc3829883.chain_2798,blat.proc3829883.chain_2802,blat.proc3829883.chain_2803	4	STRG.25909.1,STRG.25909.3,blat.proc3829883.chain_2799,blat.proc3829883.chain_2801	4
scaffold_4	retained_intron	4113453	4113870	-	asmbl_41227	none	blat.proc3829889.chain_374	1	STRG.4314.1,blat.proc3829889.chain_373,blat.proc3829889.chain_375,blat.proc3829889.chain_376,blat.proc3829889.chain_378	5
scaffold_20	retained_exon	2765259	2765357	-	asmbl_26596	none	STRG.23004.5	1	STRG.23004.4,STRG.23004.6	2
scaffold_11	ends_in_intron	17343338	17343338	+	asmbl_6197	none	blat.proc3829877.chain_2820	1	STRG.14382.3	1
scaffold_1	retained_intron	20024322	20024343	-	asmbl_1160	none	STRG.1366.1,Trinity_GG_17773_c1_g1_i1,blat.proc3829887.chain_1275	3	blat.proc3829887.chain_1274	1
scaffold_428	starts_in_intron	483	483	-	asmbl_43667	none	blat.proc3829901.chain_3364	1	STRG.30298.1	1
scaffold_12	starts_in_intron	5082164	5082164	+	asmbl_8601	none	Trinity_GG_8093_c0_g1_i1,blat.proc3829877.chain_3148	2	STRG.14667.1,blat.proc3829877.chain_3150,blat.proc3829877.chain_3151	3
scaffold_17	ends_in_intron	1099552	1099552	+	asmbl_17715	none	Trinity_GG_10922_c0_g2_i1,blat.proc3829881.chain_775	2	STRG.19937.1,blat.proc3829881.chain_774	2
scaffold_4	spliced_intron	8427515	8427786	-	asmbl_41513	none	STRG.4672.2,blat.proc3829889.chain_775	2	blat.proc3829889.chain_776	1
scaffold_24	alternate_exon	2062233	2062276	-	asmbl_32759	none	STRG.26414.4,Trinity_GG_31777_c2_g1_i2,blat.proc3829899.chain_3485	3	STRG.26414.2,blat.proc3829899.chain_3486	2
scaffold_2	alt_donor	20313402	20313403	+	asmbl_25356	none	STRG.2875.3,blat.proc3829871.chain_3036	2	STRG.2875.4	1
scaffold_10	alternate_exon	3790922	3792613	-	asmbl_3143,asmbl_3145	none	STRG.12214.1,STRG.12214.3,blat.proc3829893.chain_665	3	blat.proc3829893.chain_667	1
scaffold_12	alt_donor	7335092	7335093	+	asmbl_8708	none	STRG.14799.2,blat.proc3829877.chain_3297	2	STRG.14799.1,STRG.14799.3,blat.proc3829877.chain_3296	3
scaffold_1	ends_in_intron	13510059	13510059	-	asmbl_818	none	Trinity_GG_17516_c0_g1_i2,blat.proc3829887.chain_848	2	STRG.959.1,blat.proc3829887.chain_849	2
scaffold_21	alt_donor	3256453	3256454	+	asmbl_28503	none	STRG.23937.2,blat.proc3829883.chain_1018	2	STRG.23937.1,blat.proc3829883.chain_1019	2
scaffold_18	alt_acceptor	8863627	8863628	-	asmbl_20060,asmbl_20062,asmbl_20066,asmbl_20067	none	STRG.21541.1,STRG.21541.3,blat.proc3829897.chain_2359,blat.proc3829897.chain_2360,blat.proc3829897.chain_2362	5	Trinity_GG_29045_c0_g1_i17,blat.proc3829897.chain_2361	2
scaffold_16	skipped_exon	8639809	8640658	+	asmbl_17226	none	STRG.19479.1,Trinity_GG_10677_c0_g1_i4,blat.proc3829881.chain_363	3	STRG.19479.2,STRG.19479.3,blat.proc3829881.chain_361,blat.proc3829881.chain_362	4
scaffold_19	spliced_intron	11459558	11459723	-	asmbl_21595,asmbl_21596,asmbl_21597	none	STRG.22464.1,blat.proc3829897.chain_3111,blat.proc3829897.chain_3112,blat.proc3829897.chain_3116	4	blat.proc3829897.chain_3115	1
scaffold_13	alt_donor	10237048	10237049	-	asmbl_10017	none	STRG.16243.4	1	STRG.16243.1,STRG.16243.3,blat.proc3829895.chain_977	3
scaffold_12	alternate_exon	10346815	10346899	-	asmbl_7873,asmbl_7874	none	STRG.14992.1,STRG.14992.2,blat.proc3829893.chain_3386,blat.proc3829893.chain_3387	4	STRG.14992.3	1
scaffold_10	spliced_intron	4524826	4524957	-	asmbl_3210	none	blat.proc3829893.chain_701	1	blat.proc3829893.chain_702	1
scaffold_21	alternate_exon	11259274	11259747	-	asmbl_28131	none	STRG.24583.2	1	STRG.24583.1	1
scaffold_20	alternate_exon	2722278	2722315	+	asmbl_25654	none	STRG.22988.1,Trinity_GG_12632_c0_g1_i1,blat.proc3829883.chain_49	3	STRG.22988.2	1
scaffold_5	alt_donor	4596095	4596096	+	asmbl_43937,asmbl_43938	none	STRG.5904.1,STRG.5904.2,blat.proc3829873.chain_2040,blat.proc3829873.chain_2043	4	blat.proc3829873.chain_2044	1
scaffold_14	skipped_exon	14536440	14536729	-	asmbl_13675	none	STRG.17699.1	1	STRG.17699.4	1
scaffold_19	alt_acceptor	13162237	13162238	+	asmbl_22666,asmbl_22667,asmbl_22668	none	STRG.22627.1,STRG.22627.2,blat.proc3829881.chain_3595	3	blat.proc3829881.chain_3594	1
scaffold_10	retained_exon	1976446	1976636	-	asmbl_3002	none	STRG.12040.1,blat.proc3829893.chain_494	2	STRG.12040.2,blat.proc3829893.chain_495	2
scaffold_20	spliced_intron	12076152	12076237	-	asmbl_27140,asmbl_27144	none	STRG.23691.1,blat.proc3829899.chain_688,blat.proc3829899.chain_692	3	Trinity_GG_30196_c0_g1_i7,blat.proc3829899.chain_689,blat.proc3829899.chain_690	3
scaffold_1	ends_in_intron	10988218	10988218	+	asmbl_2035	none	blat.proc3829871.chain_720	1	STRG.716.1,blat.proc3829871.chain_721	2
scaffold_20	alt_donor	1469859	1469860	-	asmbl_26508	none	blat.proc3829897.chain_3658	1	STRG.22854.1,blat.proc3829897.chain_3657	2
scaffold_25	ends_in_intron	8668240	8668240	+	asmbl_33739	none	blat.proc3829885.chain_682	1	STRG.27672.1,STRG.27672.3,blat.proc3829885.chain_683,blat.proc3829885.chain_684	4
scaffold_13	ends_in_intron	12251777	12251777	+	asmbl_11330	none	blat.proc3829879.chain_1010	1	STRG.16339.1,STRG.16339.2,STRG.16339.3,Trinity_GG_8947_c0_g1_i1,Trinity_GG_8947_c0_g1_i3,blat.proc3829879.chain_1005,blat.proc3829879.chain_1006,blat.proc3829879.chain_1007	8
scaffold_11	spliced_intron	13033062	13033309	-	asmbl_7092,asmbl_7093,asmbl_7094,asmbl_7095,asmbl_7097	none	STRG.14169.1,STRG.14169.2,STRG.14169.3,Trinity_GG_24917_c0_g1_i2,blat.proc3829893.chain_2574,blat.proc3829893.chain_2575,blat.proc3829893.chain_2576	7	blat.proc3829893.chain_2577	1
scaffold_14	retained_exon	9287989	9288015	-	asmbl_13352,asmbl_13353,asmbl_13355,asmbl_13357,asmbl_13358	none	STRG.17324.1,STRG.17324.3,STRG.17324.4,blat.proc3829895.chain_2043,blat.proc3829895.chain_2045,blat.proc3829895.chain_2046,blat.proc3829895.chain_2051,blat.proc3829895.chain_2052	8	STRG.17324.2,blat.proc3829895.chain_2044,blat.proc3829895.chain_2047,blat.proc3829895.chain_2048	4
scaffold_20	starts_in_intron	1079736	1079736	-	asmbl_26463	none	blat.proc3829897.chain_3581	1	STRG.22801.1,STRG.22801.2,blat.proc3829897.chain_3580	3
scaffold_22	alt_acceptor	509142	509143	-	asmbl_29852,asmbl_29853,asmbl_29854,asmbl_29855,asmbl_29856,asmbl_29863,asmbl_29865,asmbl_29868	none	STRG.24685.2,STRG.24685.3,STRG.24685.4,STRG.24685.5,Trinity_GG_30818_c0_g1_i1,Trinity_GG_30818_c0_g1_i13,Trinity_GG_30818_c0_g1_i17,Trinity_GG_30818_c0_g1_i19,blat.proc3829899.chain_1822,blat.proc3829899.chain_1823,blat.proc3829899.chain_1824,blat.proc3829899.chain_1827,blat.proc3829899.chain_1830,blat.proc3829899.chain_1831,blat.proc3829899.chain_1836	15	Trinity_GG_30818_c0_g1_i8,blat.proc3829899.chain_1825	2
scaffold_9	alt_acceptor	3414002	3414003	-	asmbl_54866,asmbl_54869	none	STRG.10946.1,blat.proc3829891.chain_3122	2	STRG.10946.3,blat.proc3829891.chain_3124	2
scaffold_10	spliced_intron	13563746	13563878	-	asmbl_3813	none	STRG.12946.2,blat.proc3829893.chain_1479	2	STRG.12946.1,Trinity_GG_24275_c0_g1_i1,blat.proc3829893.chain_1478	3
scaffold_16	alternate_exon	5958646	5959142	+	asmbl_17040	none	Trinity_GG_10571_c1_g1_i2,blat.proc3829881.chain_166,blat.proc3829881.chain_167	3	STRG.19319.1	1
scaffold_23	starts_in_intron	246311	246311	-	asmbl_31287	none	blat.proc3829899.chain_2630	1	STRG.25528.1,STRG.25528.3,blat.proc3829899.chain_2628,blat.proc3829899.chain_2629	4
scaffold_10	alt_acceptor	3046800	3046801	-	asmbl_3063	none	STRG.12110.2,blat.proc3829893.chain_469	2	STRG.12110.1,blat.proc3829893.chain_468	2
scaffold_18	starts_in_intron	7234609	7234609	+	asmbl_20754	none	STRG.21439.4,Trinity_GG_11795_c0_g1_i2,blat.proc3829881.chain_2329	3	STRG.21439.1,STRG.21439.2,STRG.21439.3,blat.proc3829881.chain_2327,blat.proc3829881.chain_2330,blat.proc3829881.chain_2331	6
scaffold_7	alt_donor	15267685	15267686	+	asmbl_51312,asmbl_51314,asmbl_51316,asmbl_51318	none	STRG.9532.1,STRG.9532.5,blat.proc3829875.chain_1985,blat.proc3829875.chain_1987	4	STRG.9532.2,STRG.9532.3,STRG.9532.4,blat.proc3829875.chain_1981,blat.proc3829875.chain_1984,blat.proc3829875.chain_1986	6
scaffold_16	alt_donor	6096689	6096690	-	asmbl_16309,asmbl_16310,asmbl_16311,asmbl_16314	none	STRG.19329.1,blat.proc3829897.chain_379,blat.proc3829897.chain_380,blat.proc3829897.chain_382,blat.proc3829897.chain_384	5	STRG.19329.2,blat.proc3829897.chain_383	2
scaffold_10	alternate_exon	9337118	9337227	+	asmbl_4647	none	STRG.12653.2	1	STRG.12653.1,Trinity_GG_6967_c0_g1_i1	2
scaffold_4	alt_acceptor	1062802	1062803	-	asmbl_41103	none	STRG.4161.1,Trinity_GG_19316_c0_g1_i1,blat.proc3829889.chain_246	3	STRG.4161.2	1
scaffold_54	retained_intron	7823	8417	-	asmbl_46503	none	STRG.30045.2,Trinity_GG_33861_c1_g1_i1,blat.proc3829901.chain_3151,blat.proc3829901.chain_3153	4	STRG.30045.1,blat.proc3829901.chain_3152	2
scaffold_5	alt_acceptor	12829477	12829478	-	asmbl_45869	none	STRG.6505.3	1	STRG.6505.1,STRG.6505.2,blat.proc3829889.chain_2591,blat.proc3829889.chain_2592	4
scaffold_23	retained_intron	6856586	6856771	-	asmbl_31708	none	blat.proc3829899.chain_3087	1	STRG.26000.1,STRG.26000.2,STRG.26000.3,blat.proc3829899.chain_3088	4
scaffold_500	spliced_intron	2254	2461	+	asmbl_46446,asmbl_46450	none	STRG.30347.4,blat.proc3829885.chain_3357	2	STRG.30347.1,STRG.30347.2,STRG.30347.3,Trinity_GG_16793_c0_g1_i10,blat.proc3829885.chain_3358,blat.proc3829885.chain_3361,blat.proc3829885.chain_3362,blat.proc3829885.chain_3363	8
scaffold_8	spliced_intron	18254364	18254410	+	asmbl_52539	none	STRG.10721.3	1	STRG.10721.2,blat.proc3829875.chain_3178	2
scaffold_12	spliced_intron	12018186	12018385	+	asmbl_8935,asmbl_8936,asmbl_8937	none	STRG.15103.1,STRG.15103.2,Trinity_GG_8284_c0_g1_i2,Trinity_GG_8284_c0_g1_i3,Trinity_GG_8284_c0_g1_i5,Trinity_GG_8284_c0_g1_i7,blat.proc3829877.chain_3492,blat.proc3829877.chain_3493,blat.proc3829877.chain_3495,blat.proc3829877.chain_3496	10	blat.proc3829877.chain_3494	1
scaffold_25	spliced_intron	9119403	9119661	+	asmbl_33776	none	STRG.27709.3	1	blat.proc3829885.chain_764,blat.proc3829885.chain_765	2
scaffold_7	alt_acceptor	12542744	12542745	-	asmbl_50060	none	STRG.9352.4	1	STRG.9352.1,STRG.9352.5,blat.proc3829891.chain_1570,blat.proc3829891.chain_1571	4
scaffold_2	alt_acceptor	13385052	13385053	-	asmbl_23522	none	STRG.2353.1,Trinity_GG_18329_c0_g1_i1,blat.proc3829887.chain_2243	3	STRG.2353.2	1
scaffold_21	alt_acceptor	679451	679452	-	asmbl_27365	none	STRG.23740.4,blat.proc3829899.chain_803	2	STRG.23740.2,blat.proc3829899.chain_802	2
scaffold_15	retained_intron	2903698	2903915	-	asmbl_15069,asmbl_15070	none	STRG.18064.2,STRG.18064.6,blat.proc3829895.chain_2737	3	STRG.18064.7,blat.proc3829895.chain_2735	2
scaffold_11	alt_acceptor	2203645	2203646	-	asmbl_6463	none	STRG.13369.4	1	STRG.13369.1,STRG.13369.2,STRG.13369.3	3
scaffold_10	alt_acceptor	3065795	3065796	-	asmbl_3069	none	STRG.12119.1,Trinity_GG_23763_c0_g1_i2,blat.proc3829893.chain_569	3	STRG.12119.2,blat.proc3829893.chain_570,blat.proc3829893.chain_571	3
scaffold_4	retained_intron	4121063	4121376	-	asmbl_41234,asmbl_41235,asmbl_41236	none	STRG.4323.2,STRG.4323.3,Trinity_GG_19456_c0_g1_i2,Trinity_GG_19456_c0_g1_i5,blat.proc3829889.chain_474,blat.proc3829889.chain_475,blat.proc3829889.chain_477	7	STRG.4323.1,blat.proc3829889.chain_476	2
scaffold_2	ends_in_intron	4680876	4680876	+	asmbl_24399	none	blat.proc3829871.chain_1881	1	STRG.1894.1,blat.proc3829871.chain_1884,blat.proc3829871.chain_1885,blat.proc3829871.chain_1886	4
scaffold_6	ends_in_intron	2906507	2906507	+	asmbl_46730	none	blat.proc3829873.chain_3372	1	blat.proc3829873.chain_3373	1
scaffold_6	spliced_intron	8173890	8174001	-	asmbl_48472,asmbl_48473,asmbl_48475,asmbl_48476,asmbl_48479,asmbl_48480	none	STRG.7691.1,STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3716,blat.proc3829889.chain_3719,blat.proc3829889.chain_3720,blat.proc3829889.chain_3721,blat.proc3829889.chain_3724	8	Trinity_GG_21366_c0_g1_i14,Trinity_GG_21366_c0_g1_i3,blat.proc3829889.chain_3717,blat.proc3829889.chain_3722	4
scaffold_2	starts_in_intron	182977	182977	+	asmbl_24104	none	blat.proc3829871.chain_1577	1	STRG.1515.1,Trinity_GG_876_c0_g1_i2,blat.proc3829871.chain_1578,blat.proc3829871.chain_1579	4
scaffold_13	alternate_exon	1527761	1527812	-	asmbl_9378	none	Trinity_GG_25702_c0_g1_i1,blat.proc3829895.chain_262	2	STRG.15500.1,STRG.15500.2,STRG.15500.3,Trinity_GG_25702_c0_g1_i5,blat.proc3829895.chain_260	5
scaffold_10	alt_acceptor	11604700	11604701	+	asmbl_4750,asmbl_4758,asmbl_4759,asmbl_4760	none	STRG.12807.1,blat.proc3829877.chain_1378,blat.proc3829877.chain_1380,blat.proc3829877.chain_1381,blat.proc3829877.chain_1383,blat.proc3829877.chain_1384	6	STRG.12807.2,STRG.12807.5,blat.proc3829877.chain_1379,blat.proc3829877.chain_1382	4
scaffold_7	retained_intron	4930321	4930697	+	asmbl_50654	none	blat.proc3829875.chain_1278	1	STRG.8834.1,STRG.8834.2,blat.proc3829875.chain_1275,blat.proc3829875.chain_1276,blat.proc3829875.chain_1279,blat.proc3829875.chain_1281,blat.proc3829875.chain_1282,blat.proc3829875.chain_1283	8
scaffold_6	alternate_exon	12990049	13003403	-	asmbl_48792,asmbl_48793,asmbl_48794,asmbl_48797	none	STRG.8061.1,STRG.8061.2,STRG.8061.3,STRG.8061.4,Trinity_GG_21547_c0_g1_i5,blat.proc3829891.chain_260,blat.proc3829891.chain_262,blat.proc3829891.chain_264,blat.proc3829891.chain_266,blat.proc3829891.chain_271,blat.proc3829891.chain_275	11	STRG.8061.9,blat.proc3829891.chain_276	2
scaffold_26	ends_in_intron	426914	426914	+	asmbl_35212	none	blat.proc3829885.chain_853	1	STRG.27850.1,blat.proc3829885.chain_854	2
scaffold_25	spliced_intron	1906533	1906576	-	asmbl_34039	none	STRG.27182.3	1	STRG.27182.4	1
scaffold_7	spliced_intron	12415910	12416003	-	asmbl_50025,asmbl_50026,asmbl_50028	none	STRG.9334.1,blat.proc3829891.chain_1562,blat.proc3829891.chain_1563,blat.proc3829891.chain_1566	4	blat.proc3829891.chain_1565	1
scaffold_27	alt_acceptor	5777118	5777119	-	asmbl_36972	none	STRG.28955.1,blat.proc3829901.chain_2080	2	STRG.28955.2	1
scaffold_22	starts_in_intron	505455	505455	-	asmbl_29862,asmbl_29864,asmbl_29867	none	blat.proc3829899.chain_1821,blat.proc3829899.chain_1826,blat.proc3829899.chain_1829	3	STRG.24685.2,blat.proc3829899.chain_1823,blat.proc3829899.chain_1824,blat.proc3829899.chain_1831,blat.proc3829899.chain_1834	5
scaffold_25	alternate_exon	2089253	2089438	-	asmbl_34045	none	STRG.27196.2	1	STRG.27196.1	1
scaffold_26	alt_acceptor	9083581	9083582	-	asmbl_35035	none	STRG.28453.2,blat.proc3829901.chain_1595	2	STRG.28453.3	1
scaffold_24	alt_acceptor	3393888	3393889	+	asmbl_32157	none	STRG.26517.1,blat.proc3829883.chain_3380	2	STRG.26517.2	1
scaffold_56	ends_in_intron	14429	14429	+	asmbl_46527	none	STRG.30052.1	1	Trinity_GG_16639_c0_g1_i2,blat.proc3829885.chain_3120	2
scaffold_13	alt_donor	10435599	10435600	+	asmbl_11223,asmbl_11225	none	STRG.16236.3,STRG.16236.4,blat.proc3829879.chain_971	3	STRG.16236.1,STRG.16236.2,blat.proc3829879.chain_969,blat.proc3829879.chain_970	4
scaffold_8	starts_in_intron	9868030	9868030	+	asmbl_52102,asmbl_52103	none	STRG.10225.5,STRG.10225.6	2	STRG.10225.2,STRG.10225.4,blat.proc3829875.chain_2691,blat.proc3829875.chain_2692,blat.proc3829875.chain_2693,blat.proc3829875.chain_2694,blat.proc3829875.chain_2695,blat.proc3829875.chain_2697	8
scaffold_12	retained_intron	6545038	6545105	+	asmbl_8661	none	STRG.14744.2	1	STRG.14744.1,blat.proc3829877.chain_3229	2
scaffold_21	alt_acceptor	7445928	7445929	+	asmbl_28753	none	STRG.24258.1,blat.proc3829883.chain_1411	2	STRG.24258.2	1
scaffold_28	retained_intron	6926103	6926670	-	asmbl_37691	none	STRG.29744.1,Trinity_GG_33697_c0_g1_i1,blat.proc3829901.chain_2888	3	STRG.29744.3,blat.proc3829901.chain_2887	2
scaffold_15	starts_in_intron	15501163	15501163	+	asmbl_14754,asmbl_14755	none	Trinity_GG_10382_c0_g1_i1,Trinity_GG_10382_c0_g1_i2,blat.proc3829879.chain_3533,blat.proc3829879.chain_3534	4	STRG.18940.1,Trinity_GG_10382_c0_g1_i3,Trinity_GG_10382_c0_g1_i5,Trinity_GG_10382_c0_g1_i6,blat.proc3829879.chain_3535,blat.proc3829879.chain_3536,blat.proc3829879.chain_3537	7
scaffold_23	retained_exon	2164418	2164595	-	asmbl_31418	none	STRG.25669.7	1	STRG.25669.1,STRG.25669.3	2
scaffold_2	starts_in_intron	4865822	4865822	-	asmbl_23135	none	blat.proc3829887.chain_1778	1	STRG.1908.1,blat.proc3829887.chain_1777	2
scaffold_14	starts_in_intron	3170032	3170032	-	asmbl_12980	none	blat.proc3829895.chain_1633	1	STRG.16894.1,STRG.16894.2,blat.proc3829895.chain_1632,blat.proc3829895.chain_1634	4
scaffold_4	alt_acceptor	4498794	4498795	-	asmbl_41256	none	STRG.4352.1,Trinity_GG_19457_c0_g1_i2,blat.proc3829889.chain_479	3	STRG.4352.2	1
scaffold_24	retained_intron	4328698	4328844	+	asmbl_32206	none	blat.proc3829883.chain_3424	1	STRG.26581.1,STRG.26581.2	2
scaffold_27	alternate_exon	2830195	2836143	+	asmbl_36086	none	STRG.28748.1,blat.proc3829885.chain_1828	2	Trinity_GG_15915_c0_g1_i3,blat.proc3829885.chain_1825	2
scaffold_11	retained_intron	15653309	15653408	-	asmbl_7176,asmbl_7177	none	STRG.14297.2,Trinity_GG_25013_c0_g1_i13,blat.proc3829893.chain_2731,blat.proc3829893.chain_2735,blat.proc3829893.chain_2736	5	STRG.14297.1,blat.proc3829893.chain_2729,blat.proc3829893.chain_2732,blat.proc3829893.chain_2733,blat.proc3829893.chain_2737	5
scaffold_20	alt_donor	10521083	10521084	-	asmbl_27031	none	STRG.23576.2,blat.proc3829899.chain_520	2	STRG.23576.1,blat.proc3829899.chain_522	2
scaffold_27	spliced_intron	2881786	2881921	+	asmbl_36099,asmbl_36100,asmbl_36103,asmbl_36104,asmbl_36106	none	STRG.28753.1,STRG.28753.2,STRG.28753.4,blat.proc3829885.chain_1817,blat.proc3829885.chain_1820,blat.proc3829885.chain_1822,blat.proc3829885.chain_1823	7	blat.proc3829885.chain_1819	1
scaffold_2	skipped_exon	14548735	14549730	+	asmbl_24989	none	STRG.2454.1	1	STRG.2454.2	1
scaffold_9	starts_in_intron	16602304	16602304	+	asmbl_54589	none	Trinity_GG_6580_c0_g1_i1	1	STRG.11788.1,blat.proc3829877.chain_543	2
scaffold_9	retained_intron	12305541	12305790	+	asmbl_54410,asmbl_54411	none	STRG.11549.2,blat.proc3829877.chain_331	2	STRG.11549.1,blat.proc3829877.chain_330	2
scaffold_6	starts_in_intron	13355931	13355931	-	asmbl_48847	none	blat.proc3829891.chain_337	1	STRG.8087.1,STRG.8087.2,blat.proc3829891.chain_338,blat.proc3829891.chain_340,blat.proc3829891.chain_341	5
scaffold_22	starts_in_intron	11232295	11232295	+	asmbl_29663	none	Trinity_GG_14053_c0_g1_i1	1	STRG.25435.1	1
scaffold_13	retained_intron	7002522	7002602	-	asmbl_9788	none	STRG.15972.1	1	STRG.15972.2,blat.proc3829895.chain_666	2
scaffold_10	retained_exon	1425721	1425808	+	asmbl_4222	none	blat.proc3829877.chain_733	1	STRG.12005.1,STRG.12005.4,STRG.12005.5,Trinity_GG_6688_c0_g1_i6,blat.proc3829877.chain_729,blat.proc3829877.chain_731	6
scaffold_26	skipped_exon	5744770	5745955	+	asmbl_35558,asmbl_35560,asmbl_35562	none	STRG.28253.1,Trinity_GG_15616_c0_g1_i2,blat.proc3829885.chain_1266,blat.proc3829885.chain_1267	4	STRG.28253.2,STRG.28253.3,blat.proc3829885.chain_1265	3
scaffold_13	spliced_intron	3735854	3736052	+	asmbl_10710,asmbl_10711,asmbl_10712,asmbl_10713,asmbl_10714,asmbl_10716,asmbl_10717	none	STRG.15686.1,STRG.15686.2,STRG.15686.3,Trinity_GG_8631_c0_g1_i4,Trinity_GG_8631_c0_g1_i6,Trinity_GG_8631_c0_g1_i8,blat.proc3829879.chain_389,blat.proc3829879.chain_390,blat.proc3829879.chain_393,blat.proc3829879.chain_394,blat.proc3829879.chain_395,blat.proc3829879.chain_396	12	blat.proc3829879.chain_391	1
scaffold_13	alt_acceptor	12019065	12019066	-	asmbl_10085	none	STRG.16321.2	1	STRG.16321.1	1
scaffold_14	spliced_intron	8651388	8651714	-	asmbl_13314	none	STRG.17285.1,blat.proc3829895.chain_2014	2	blat.proc3829895.chain_2013	1
scaffold_24	alternate_exon	5840196	5840427	+	asmbl_32245	none	STRG.26627.1,blat.proc3829883.chain_3514	2	STRG.26627.2,blat.proc3829883.chain_3513	2
scaffold_13	alt_acceptor	518486	518487	+	asmbl_10456,asmbl_10458,asmbl_10460,asmbl_10461	none	STRG.15434.2,STRG.15434.4,STRG.15434.5,blat.proc3829879.chain_115,blat.proc3829879.chain_116	5	STRG.15434.3,Trinity_GG_8491_c0_g1_i1,Trinity_GG_8491_c0_g1_i2,blat.proc3829879.chain_110,blat.proc3829879.chain_113	5
scaffold_14	alt_donor	11292147	11292148	-	asmbl_13452	none	STRG.17446.2	1	STRG.17446.1,blat.proc3829895.chain_2113	2
scaffold_28	retained_intron	5024248	5024400	+	asmbl_38259	none	STRG.29640.3,Trinity_GG_16373_c2_g1_i2,blat.proc3829885.chain_2640	3	STRG.29640.1,STRG.29640.2,blat.proc3829885.chain_2641,blat.proc3829885.chain_2642	4
scaffold_8	spliced_intron	9468446	9468514	-	asmbl_53030,asmbl_53032,asmbl_53034,asmbl_53036,asmbl_53038	none	STRG.10197.1,blat.proc3829891.chain_2400,blat.proc3829891.chain_2402,blat.proc3829891.chain_2405,blat.proc3829891.chain_2406,blat.proc3829891.chain_2408	6	blat.proc3829891.chain_2407	1
scaffold_23	retained_intron	7915714	7915792	-	asmbl_31778	none	blat.proc3829899.chain_3206	1	STRG.26078.1,STRG.26078.2,blat.proc3829899.chain_3204,blat.proc3829899.chain_3207	4
scaffold_18	ends_in_intron	4763351	4763351	+	asmbl_20588,asmbl_20590	none	Trinity_GG_11674_c0_g2_i1,Trinity_GG_11674_c0_g2_i2,blat.proc3829881.chain_2091,blat.proc3829881.chain_2092	4	STRG.21261.1	1
scaffold_6	starts_in_intron	4290346	4290346	-	asmbl_48252	none	blat.proc3829889.chain_3441	1	blat.proc3829889.chain_3439	1
scaffold_8	alt_acceptor	8269396	8269397	-	asmbl_52942	none	STRG.10099.2,blat.proc3829891.chain_2270	2	STRG.10099.1,Trinity_GG_22659_c0_g1_i4,blat.proc3829891.chain_2271,blat.proc3829891.chain_2272	4
scaffold_3	alternate_exon	6247494	6256998	-	asmbl_38882,asmbl_38883,asmbl_38884	none	STRG.3263.1,STRG.3263.2,STRG.3263.7,Trinity_GG_18798_c4_g1_i1,blat.proc3829887.chain_3032,blat.proc3829887.chain_3035,blat.proc3829887.chain_3037,blat.proc3829887.chain_3041	8	STRG.3263.5,STRG.3263.6,blat.proc3829887.chain_3034	3
scaffold_4	alt_donor	13825712	13825713	-	asmbl_41756	none	STRG.5009.1,blat.proc3829889.chain_1059	2	STRG.5009.2,STRG.5009.3,blat.proc3829889.chain_1060	3
scaffold_10	ends_in_intron	1114440	1114440	+	asmbl_4187	none	Trinity_GG_6667_c0_g1_i1,blat.proc3829877.chain_689	2	STRG.11990.1,Trinity_GG_6667_c0_g1_i2,blat.proc3829877.chain_690	3
scaffold_8	spliced_intron	14134155	14134355	-	asmbl_53300,asmbl_53302	none	STRG.10512.1,STRG.10512.2	2	blat.proc3829891.chain_2654	1
scaffold_5	retained_exon	18391919	18391994	-	asmbl_46213	none	STRG.6965.1	1	STRG.6965.2,blat.proc3829889.chain_2989	2
scaffold_1	skipped_exon	22371258	22372255	+	asmbl_2677,asmbl_2678	none	STRG.1490.3,STRG.1490.5	2	STRG.1490.1,STRG.1490.2,STRG.1490.4	3
scaffold_7	retained_intron	13196688	13197769	-	asmbl_50111,asmbl_50112,asmbl_50113	none	STRG.9418.3,Trinity_GG_22315_c0_g1_i2,blat.proc3829891.chain_1696,blat.proc3829891.chain_1697,blat.proc3829891.chain_1698	5	STRG.9418.1,blat.proc3829891.chain_1691,blat.proc3829891.chain_1692,blat.proc3829891.chain_1695	4
scaffold_13	retained_intron	5136	5411	+	asmbl_10416,asmbl_10418,asmbl_10420,asmbl_10421	none	STRG.15408.1,Trinity_GG_8474_c0_g1_i1,Trinity_GG_8474_c0_g1_i6,Trinity_GG_8474_c0_g1_i7,Trinity_GG_8474_c0_g1_i8,blat.proc3829879.chain_71,blat.proc3829879.chain_72,blat.proc3829879.chain_75,blat.proc3829879.chain_78	9	STRG.15408.2,STRG.15408.3,Trinity_GG_8474_c0_g1_i2,Trinity_GG_8474_c0_g1_i4,blat.proc3829879.chain_74,blat.proc3829879.chain_76	6
scaffold_18	starts_in_intron	7166724	7166724	+	asmbl_20741	none	Trinity_GG_11794_c0_g1_i1,blat.proc3829881.chain_2325	2	STRG.21401.1,Trinity_GG_11794_c0_g1_i2,blat.proc3829881.chain_2326	3
scaffold_27	starts_in_intron	1609192	1609192	-	asmbl_36721	none	blat.proc3829901.chain_1790	1	blat.proc3829901.chain_1789	1
scaffold_24	spliced_intron	6311156	6311448	+	asmbl_32309,asmbl_32310,asmbl_32311,asmbl_32313	none	STRG.26676.1,STRG.26676.2,STRG.26676.4,blat.proc3829883.chain_3586,blat.proc3829883.chain_3587	5	Trinity_GG_14752_c0_g1_i3,blat.proc3829883.chain_3585	2
scaffold_17	spliced_intron	13084889	13085573	+	asmbl_18435	none	STRG.20799.1,blat.proc3829881.chain_1618	2	STRG.20799.3,Trinity_GG_11410_c0_g1_i2,Trinity_GG_11410_c0_g1_i5,Trinity_GG_11410_c0_g1_i6,blat.proc3829881.chain_1615	5
scaffold_25	skipped_exon	9848082	9849586	+	asmbl_33836	none	STRG.27776.1,blat.proc3829885.chain_797	2	STRG.27776.2	1
scaffold_5	spliced_intron	18561081	18561149	+	asmbl_44921,asmbl_44923	none	STRG.6978.5,Trinity_GG_3847_c0_g1_i8,blat.proc3829873.chain_3146	3	Trinity_GG_3847_c0_g1_i4,blat.proc3829873.chain_3145	2
scaffold_13	spliced_intron	16515276	16515326	+	asmbl_11560	none	blat.proc3829879.chain_1407	1	STRG.16687.1,Trinity_GG_9186_c0_g1_i1	2
scaffold_25	alternate_exon	9429027	9429085	+	asmbl_33805	none	STRG.27738.2	1	STRG.27738.3	1
scaffold_2	starts_in_intron	4324164	4324164	-	asmbl_23093	none	blat.proc3829887.chain_1724	1	STRG.1863.1,STRG.1863.2,blat.proc3829887.chain_1722,blat.proc3829887.chain_1723	4
scaffold_22	ends_in_intron	4363201	4363201	+	asmbl_29283	none	STRG.24839.1,blat.proc3829883.chain_1868	2	STRG.24839.2	1
scaffold_126	alt_acceptor	3316	3317	+	asmbl_9243	none	STRG.30134.1,blat.proc3829885.chain_3200	2	STRG.30134.2	1
scaffold_8	skipped_exon	10027223	10028131	-	asmbl_53088	none	STRG.10250.3	1	STRG.10250.1,STRG.10250.2,blat.proc3829891.chain_2348	3
scaffold_19	spliced_intron	5197616	5197930	+	asmbl_22165	none	STRG.22080.1,blat.proc3829881.chain_2934	2	STRG.22080.2,blat.proc3829881.chain_2933	2
scaffold_26	retained_intron	9083573	9083738	-	asmbl_35036	none	STRG.28453.1,blat.proc3829901.chain_1598	2	STRG.28453.3	1
scaffold_2	retained_intron	7469205	7469515	-	asmbl_23285,asmbl_23288,asmbl_23289	none	STRG.2075.2,blat.proc3829887.chain_1892,blat.proc3829887.chain_1898	3	STRG.2075.3,STRG.2075.4,Trinity_GG_18127_c0_g1_i18,blat.proc3829887.chain_1893	4
scaffold_9	alt_donor	6842731	6842732	+	asmbl_54094	none	blat.proc3829875.chain_3607	1	STRG.11184.1,blat.proc3829875.chain_3606	2
scaffold_11	alt_donor	1606333	1606334	-	asmbl_6418	none	STRG.13326.1	1	STRG.13326.2	1
scaffold_1	alt_acceptor	14223383	14223384	+	asmbl_2335	none	STRG.1010.2,blat.proc3829871.chain_1038	2	STRG.1010.1,blat.proc3829871.chain_1039	2
scaffold_20	retained_intron	11078653	11078744	-	asmbl_27058,asmbl_27059	none	blat.proc3829899.chain_625,blat.proc3829899.chain_627	2	STRG.23611.2,blat.proc3829899.chain_624,blat.proc3829899.chain_626	3
scaffold_10	starts_in_intron	11603845	11603845	+	asmbl_4753	none	blat.proc3829877.chain_1382	1	STRG.12807.1,STRG.12807.2,STRG.12807.5,blat.proc3829877.chain_1378,blat.proc3829877.chain_1380,blat.proc3829877.chain_1381,blat.proc3829877.chain_1383,blat.proc3829877.chain_1384,blat.proc3829877.chain_1385	9
scaffold_1	alt_acceptor	18042598	18042599	-	asmbl_1082,asmbl_1083	none	STRG.1266.1,blat.proc3829887.chain_1162,blat.proc3829887.chain_1163	3	STRG.1266.2	1
scaffold_6	alternate_exon	3054520	3055243	+	asmbl_46743,asmbl_46749,asmbl_46751	none	STRG.7308.2,blat.proc3829873.chain_3440,blat.proc3829873.chain_3443,blat.proc3829873.chain_3445	4	STRG.7308.1,blat.proc3829873.chain_3438,blat.proc3829873.chain_3439	3
scaffold_12	retained_intron	12291139	12292234	-	asmbl_7985,asmbl_7986	none	STRG.15114.1,STRG.15114.3,Trinity_GG_25420_c0_g1_i5,Trinity_GG_25420_c1_g1_i1,blat.proc3829893.chain_3457,blat.proc3829893.chain_3462	6	STRG.15114.4,STRG.15114.5,STRG.15114.6	3
scaffold_2	alt_acceptor	16288308	16288309	+	asmbl_25140	none	blat.proc3829871.chain_2749	1	STRG.2560.1,STRG.2560.2,blat.proc3829871.chain_2750,blat.proc3829871.chain_2752	4
scaffold_26	ends_in_intron	9918801	9918801	-	asmbl_35071	none	Trinity_GG_32924_c0_g1_i3,blat.proc3829901.chain_1612	2	STRG.28506.1,STRG.28506.2,STRG.28506.3,Trinity_GG_32924_c0_g1_i4,blat.proc3829901.chain_1613	5
scaffold_19	ends_in_intron	1038476	1038476	+	asmbl_22030,asmbl_22031	none	blat.proc3829881.chain_2841,blat.proc3829881.chain_2842	2	STRG.21879.1	1
scaffold_6	alt_acceptor	50363	50364	+	asmbl_46579	none	STRG.7052.1,Trinity_GG_3881_c0_g1_i1,blat.proc3829873.chain_3196	3	STRG.7052.2	1
scaffold_11	retained_intron	13035297	13036295	-	asmbl_7092	none	STRG.14169.3,Trinity_GG_24917_c0_g2_i1,blat.proc3829893.chain_2578	3	STRG.14169.1,blat.proc3829893.chain_2575,blat.proc3829893.chain_2577	3
scaffold_5	retained_exon	236514	237070	-	asmbl_45153	none	STRG.5594.4	1	STRG.5594.1,Trinity_GG_20172_c0_g1_i1,blat.proc3829889.chain_1710	3
scaffold_7	starts_in_intron	8510896	8510896	+	asmbl_50888	none	Trinity_GG_5034_c0_g1_i5,blat.proc3829875.chain_1532	2	STRG.9068.1,STRG.9068.2,STRG.9068.4,blat.proc3829875.chain_1527	4
scaffold_9	retained_intron	8939956	8940066	-	asmbl_55114	none	blat.proc3829891.chain_3360	1	STRG.11268.1,STRG.11268.2,blat.proc3829891.chain_3363,blat.proc3829891.chain_3364	4
scaffold_9	starts_in_intron	5550510	5550510	-	asmbl_54971	none	STRG.11124.2	1	STRG.11124.1,STRG.11124.3,blat.proc3829891.chain_3225,blat.proc3829891.chain_3226	4
scaffold_8	skipped_exon	9128689	9129575	-	asmbl_53005,asmbl_53006	none	STRG.10161.3,STRG.10161.4	2	STRG.10161.1,STRG.10161.2,blat.proc3829891.chain_2335,blat.proc3829891.chain_2336	4
scaffold_1	alternate_exon	9174738	9174768	-	asmbl_529	none	STRG.606.2	1	STRG.606.1	1
scaffold_18	alternate_exon	1390313	1391552	-	asmbl_19651	none	STRG.21014.2,Trinity_GG_28794_c0_g1_i1,blat.proc3829897.chain_1914	3	STRG.21014.3,Trinity_GG_28799_c0_g1_i5,blat.proc3829897.chain_1931	3
scaffold_18	retained_intron	7481614	7482977	-	asmbl_19972	none	STRG.21431.1,Trinity_GG_28969_c0_g1_i1,blat.proc3829897.chain_2214	3	Trinity_GG_28969_c0_g1_i2	1
scaffold_11	ends_in_intron	10265872	10265872	-	asmbl_6968,asmbl_6969	none	STRG.14022.2,STRG.14022.3,blat.proc3829893.chain_2381,blat.proc3829893.chain_2384	4	STRG.14022.1,blat.proc3829893.chain_2382,blat.proc3829893.chain_2383	3
scaffold_3	alt_donor	17116510	17116511	+	asmbl_40607	none	STRG.3957.2	1	STRG.3957.3,STRG.3957.4,STRG.3957.6,STRG.3957.7,Trinity_GG_2203_c0_g1_i10,blat.proc3829873.chain_317,blat.proc3829873.chain_322	7
scaffold_8	starts_in_intron	11630940	11630940	+	asmbl_52243	none	Trinity_GG_5772_c0_g1_i4,blat.proc3829875.chain_2878	2	STRG.10363.1,blat.proc3829875.chain_2877,blat.proc3829875.chain_2879,blat.proc3829875.chain_2880	4
scaffold_28	spliced_intron	5755662	5756003	+	asmbl_38299	none	STRG.29691.2,Trinity_GG_16456_c0_g1_i2,blat.proc3829885.chain_2800	3	Trinity_GG_16456_c0_g2_i1,blat.proc3829885.chain_2801	2
scaffold_2	starts_in_intron	5447598	5447598	+	asmbl_24447	none	Trinity_GG_1088_c0_g1_i2,blat.proc3829871.chain_1987	2	STRG.1951.1,STRG.1951.2,STRG.1951.3,Trinity_GG_1088_c0_g1_i5,blat.proc3829871.chain_1988,blat.proc3829871.chain_1989,blat.proc3829871.chain_1990	7
scaffold_12	retained_intron	4549036	4549126	-	asmbl_7535	none	STRG.14614.2	1	STRG.14614.1,blat.proc3829893.chain_2962	2
scaffold_23	alternate_exon	6318939	6318987	-	asmbl_31697	none	STRG.25958.1	1	STRG.25958.2,blat.proc3829899.chain_3039	2
scaffold_2	alt_donor	14015546	14015547	+	asmbl_24899	none	STRG.2395.1,blat.proc3829871.chain_2483	2	STRG.2395.2,blat.proc3829871.chain_2482	2
scaffold_23	spliced_intron	8843715	8843755	+	asmbl_31084	none	STRG.26132.1	1	STRG.26132.2,blat.proc3829883.chain_3045	2
scaffold_6	spliced_intron	5752777	5753623	+	asmbl_46916,asmbl_46917,asmbl_46918	none	STRG.7525.2,blat.proc3829873.chain_3644,blat.proc3829873.chain_3645,blat.proc3829873.chain_3647	4	STRG.7525.1,Trinity_GG_4120_c0_g1_i1,blat.proc3829873.chain_3646	3
scaffold_22	skipped_exon	511408	512941	-	asmbl_29852,asmbl_29854,asmbl_29855,asmbl_29863,asmbl_29868	none	STRG.24685.2,STRG.24685.3,STRG.24685.5,Trinity_GG_30818_c0_g1_i13,Trinity_GG_30818_c0_g1_i19,blat.proc3829899.chain_1823,blat.proc3829899.chain_1824,blat.proc3829899.chain_1827,blat.proc3829899.chain_1836	9	STRG.24685.4,Trinity_GG_30818_c0_g1_i17,blat.proc3829899.chain_1830,blat.proc3829899.chain_1831	4
scaffold_6	spliced_intron	9089438	9089565	+	asmbl_47135	none	STRG.7778.1,blat.proc3829875.chain_154	2	blat.proc3829875.chain_155	1
scaffold_4	alt_acceptor	14111230	14111231	+	asmbl_43177,asmbl_43181	none	STRG.5033.1,STRG.5033.2,blat.proc3829873.chain_1349	3	STRG.5033.3	1
scaffold_7	alt_acceptor	18351029	18351030	-	asmbl_50281	none	STRG.9657.2	1	STRG.9657.1,STRG.9657.3,blat.proc3829891.chain_1919,blat.proc3829891.chain_1920	4
scaffold_9	ends_in_intron	15578854	15578854	-	asmbl_55506	none	blat.proc3829893.chain_130	1	STRG.11742.1	1
scaffold_4	alt_acceptor	9964722	9964723	-	asmbl_41569	none	STRG.4758.2	1	STRG.4758.1,blat.proc3829889.chain_822,blat.proc3829889.chain_824	3
scaffold_3	alt_acceptor	7926284	7926285	+	asmbl_40143	none	STRG.3376.2	1	STRG.3376.1	1
scaffold_19	ends_in_intron	3508271	3508271	+	asmbl_22120	none	blat.proc3829881.chain_2961	1	STRG.22023.1,blat.proc3829881.chain_2959	2
scaffold_19	spliced_intron	8870718	8870824	-	asmbl_21522	none	STRG.22329.1,blat.proc3829897.chain_3063	2	blat.proc3829897.chain_3064	1
scaffold_9	alt_donor	16384828	16384829	+	asmbl_54568	none	STRG.11784.2,blat.proc3829877.chain_532	2	STRG.11784.1,blat.proc3829877.chain_531	2
scaffold_13	skipped_exon	2352642	2354606	+	asmbl_10575,asmbl_10576,asmbl_10579,asmbl_10581,asmbl_10582,asmbl_10584,asmbl_10585,asmbl_10591	none	STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161,blat.proc3829879.chain_162	8	blat.proc3829879.chain_152,blat.proc3829879.chain_157	2
scaffold_13	starts_in_intron	11156317	11156317	-	asmbl_10032	none	blat.proc3829895.chain_964	1	STRG.16264.1,blat.proc3829895.chain_963	2
scaffold_15	alternate_exon	6959759	6960553	+	asmbl_14212,asmbl_14213	none	STRG.18295.1,STRG.18295.2	2	blat.proc3829879.chain_2933	1
scaffold_13	alternate_exon	6396425	6396467	+	asmbl_10911	none	Trinity_GG_8718_c0_g1_i3,blat.proc3829879.chain_554	2	STRG.15914.1,STRG.15914.5,Trinity_GG_8718_c0_g1_i1,blat.proc3829879.chain_557	4
scaffold_6	ends_in_intron	16293197	16293197	-	asmbl_49051	none	blat.proc3829891.chain_668	1	STRG.8349.1,blat.proc3829891.chain_666	2
scaffold_13	skipped_exon	517905	519724	+	asmbl_10453	none	Trinity_GG_8491_c0_g1_i2,blat.proc3829879.chain_113	2	STRG.15434.4,STRG.15434.5	2
scaffold_11	ends_in_intron	15705975	15705975	-	asmbl_7191	none	STRG.14299.2,Trinity_GG_25004_c0_g1_i1,blat.proc3829893.chain_2716	3	STRG.14299.1	1
scaffold_10	spliced_intron	6871848	6872357	-	asmbl_3423,asmbl_3424,asmbl_3425,asmbl_3426,asmbl_3427	none	STRG.12505.1,blat.proc3829893.chain_990,blat.proc3829893.chain_991,blat.proc3829893.chain_994,blat.proc3829893.chain_996,blat.proc3829893.chain_998,blat.proc3829893.chain_999	7	blat.proc3829893.chain_997	1
scaffold_1	spliced_intron	6019056	6019228	+	asmbl_1809,asmbl_1811	none	STRG.406.1,blat.proc3829871.chain_484,blat.proc3829871.chain_486	3	blat.proc3829871.chain_485	1
scaffold_8	retained_intron	8901322	8902097	-	asmbl_52973	none	STRG.10137.2,blat.proc3829891.chain_2318	2	STRG.10137.1,blat.proc3829891.chain_2317	2
scaffold_27	starts_in_intron	343182	343182	-	asmbl_36624,asmbl_36625,asmbl_36628	none	STRG.28542.1,STRG.28542.2,blat.proc3829901.chain_1658,blat.proc3829901.chain_1661	4	STRG.28542.3,blat.proc3829901.chain_1660	2
scaffold_28	skipped_exon	538019	538931	-	asmbl_37235	none	STRG.29258.3	1	STRG.29258.1,STRG.29258.2,blat.proc3829901.chain_2295,blat.proc3829901.chain_2296,blat.proc3829901.chain_2297	5
scaffold_1	alt_acceptor	18029843	18029844	-	asmbl_1075	none	blat.proc3829871.chain_1253	1	STRG.1264.4	1
scaffold_1	retained_exon	12448483	12448552	+	asmbl_2201,asmbl_2203,asmbl_2204,asmbl_2205,asmbl_2208	none	STRG.856.1,STRG.856.3,STRG.856.4,STRG.856.5,Trinity_GG_494_c0_g1_i3,Trinity_GG_494_c0_g1_i6,Trinity_GG_494_c0_g1_i8,blat.proc3829871.chain_882,blat.proc3829871.chain_887,blat.proc3829871.chain_888	10	STRG.856.2,Trinity_GG_494_c0_g1_i5,blat.proc3829871.chain_883	3
scaffold_4	skipped_exon	7266733	7267957	+	asmbl_42816	none	STRG.4560.2,Trinity_GG_2542_c0_g1_i1,blat.proc3829873.chain_958	3	STRG.4560.4,STRG.4560.6,Trinity_GG_2542_c0_g1_i3,blat.proc3829873.chain_959	4
scaffold_4	ends_in_intron	16479202	16479202	-	asmbl_41932	none	Trinity_GG_19942_c0_g1_i1	1	STRG.5226.1,STRG.5226.2,STRG.5226.3,blat.proc3829889.chain_1289,blat.proc3829889.chain_1292,blat.proc3829889.chain_1293	6
scaffold_16	alt_acceptor	787931	787932	+	asmbl_16836,asmbl_16838	none	STRG.19046.3,blat.proc3829879.chain_3589,blat.proc3829879.chain_3590	3	STRG.19046.1,STRG.19046.2,blat.proc3829879.chain_3591,blat.proc3829879.chain_3592,blat.proc3829879.chain_3593	5
scaffold_4	skipped_exon	5228399	5231130	-	asmbl_41309,asmbl_41312	none	STRG.4417.1,STRG.4417.3,blat.proc3829889.chain_436,blat.proc3829889.chain_439	4	STRG.4417.5,blat.proc3829889.chain_437	2
scaffold_3	ends_in_intron	17782029	17782029	+	asmbl_40653	none	blat.proc3829873.chain_382	1	STRG.3993.1,STRG.3993.2,Trinity_GG_2236_c0_g1_i1,blat.proc3829873.chain_383,blat.proc3829873.chain_384	5
scaffold_5	retained_exon	2166760	2166924	-	asmbl_45266	none	STRG.5744.3	1	STRG.5744.1,blat.proc3829889.chain_1867	2
scaffold_10	retained_intron	379136	379266	-	asmbl_2866,asmbl_2868	none	STRG.11913.5,Trinity_GG_23607_c0_g1_i5,blat.proc3829893.chain_304	3	STRG.11913.1,STRG.11913.2,STRG.11913.3,STRG.11913.4,Trinity_GG_23607_c0_g1_i1,blat.proc3829893.chain_302,blat.proc3829893.chain_306	7
scaffold_1	alt_acceptor	3177920	3177921	+	asmbl_1572	none	STRG.197.1,Trinity_GG_90_c0_g1_i1,blat.proc3829871.chain_156	3	STRG.197.2	1
scaffold_5	alternate_exon	5739583	5739687	+	asmbl_44026	none	STRG.5984.5,blat.proc3829873.chain_2046	2	STRG.5984.3,STRG.5984.4,blat.proc3829873.chain_2048,blat.proc3829873.chain_2049	4
scaffold_10	skipped_exon	4049797	4051046	+	asmbl_4382	none	STRG.12236.2	1	STRG.12236.1,Trinity_GG_6793_c1_g1_i2,blat.proc3829877.chain_912	3
scaffold_13	retained_exon	3705325	3705376	-	asmbl_9524,asmbl_9526	none	STRG.15671.4,STRG.15671.6,blat.proc3829895.chain_439	3	STRG.15671.3	1
scaffold_18	alternate_exon	811983	814925	+	asmbl_20345	none	STRG.20995.1,blat.proc3829881.chain_1868	2	blat.proc3829881.chain_1864	1
scaffold_5	retained_exon	16018236	16018358	-	asmbl_46120	none	STRG.6778.1,blat.proc3829889.chain_2849	2	blat.proc3829889.chain_2848	1
scaffold_464	spliced_intron	3524	3609	+	asmbl_43703	none	blat.proc3829885.chain_3344	1	STRG.30310.2,blat.proc3829885.chain_3345	2
scaffold_18	ends_in_intron	9635498	9635498	-	asmbl_20102	none	blat.proc3829897.chain_2403	1	STRG.21568.1,blat.proc3829897.chain_2405	2
scaffold_24	alt_donor	7099270	7099271	+	asmbl_32373	none	STRG.26741.1	1	STRG.26741.2	1
scaffold_5	retained_intron	8554846	8554950	-	asmbl_45604	none	STRG.6186.1,blat.proc3829889.chain_2243	2	STRG.6186.2	1
scaffold_11	starts_in_intron	6511304	6511304	-	asmbl_6690	none	STRG.13682.1,blat.proc3829893.chain_2114	2	STRG.13682.3,Trinity_GG_24660_c0_g1_i3,blat.proc3829893.chain_2116	3
scaffold_1	alt_donor	1042580	1042581	+	asmbl_1450	none	STRG.62.4	1	STRG.62.2,blat.proc3829871.chain_11	2
scaffold_20	skipped_exon	3036350	3037166	+	asmbl_25667	none	STRG.23025.2,Trinity_GG_12684_c0_g1_i2,blat.proc3829883.chain_129	3	STRG.23025.1,blat.proc3829883.chain_128	2
scaffold_25	retained_intron	7220041	7220502	-	asmbl_34364	none	blat.proc3829901.chain_880	1	STRG.27562.2	1
scaffold_9	skipped_exon	17495937	17497232	-	asmbl_55616	none	STRG.11833.1,Trinity_GG_23550_c0_g1_i1,blat.proc3829893.chain_203	3	STRG.11833.2,Trinity_GG_23550_c0_g1_i2,blat.proc3829893.chain_204	3
scaffold_14	spliced_intron	11550073	11550179	+	asmbl_12368	none	STRG.17475.1,blat.proc3829879.chain_2180	2	STRG.17475.2	1
scaffold_10	ends_in_intron	13281566	13281566	-	asmbl_3770	none	Trinity_GG_24247_c3_g1_i1,blat.proc3829893.chain_1439	2	STRG.12910.1,STRG.12910.2,STRG.12910.3,STRG.12910.4,blat.proc3829893.chain_1437	5
scaffold_4	alt_acceptor	6602288	6602289	+	asmbl_42747,asmbl_42748	none	STRG.4520.2,blat.proc3829873.chain_860	2	STRG.4520.1,blat.proc3829873.chain_857,blat.proc3829873.chain_858	3
scaffold_27	alt_acceptor	4380753	4380754	+	asmbl_36240	none	STRG.28876.3,blat.proc3829885.chain_1986,blat.proc3829885.chain_1987	3	STRG.28876.1,blat.proc3829885.chain_1988,blat.proc3829885.chain_1989	3
scaffold_10	starts_in_intron	3928980	3928980	-	asmbl_3156	none	STRG.12230.2	1	STRG.12230.1,blat.proc3829893.chain_693,blat.proc3829893.chain_694	3
scaffold_4	alt_donor	6701492	6701493	+	asmbl_42752	none	STRG.4530.1,blat.proc3829873.chain_876	2	STRG.4530.2,STRG.4530.3	2
scaffold_10	starts_in_intron	635702	635702	-	asmbl_2890,asmbl_2893	none	blat.proc3829893.chain_379,blat.proc3829893.chain_381	2	STRG.11933.1,blat.proc3829893.chain_378	2
scaffold_16	alternate_exon	1781017	1786061	+	asmbl_16876	none	STRG.19095.3,blat.proc3829879.chain_3708	2	STRG.19095.2,Trinity_GG_10475_c0_g1_i5,blat.proc3829879.chain_3714	3
scaffold_8	alternate_exon	11272893	11272950	+	asmbl_52200	none	Trinity_GG_5734_c0_g1_i1,blat.proc3829875.chain_2818	2	STRG.10338.1,Trinity_GG_5734_c0_g1_i2,blat.proc3829875.chain_2817	3
scaffold_10	alt_donor	14839127	14839128	-	asmbl_3866	none	blat.proc3829893.chain_1483	1	STRG.13020.1,blat.proc3829893.chain_1482	2
scaffold_5	retained_exon	14263019	14263099	+	asmbl_44583,asmbl_44586,asmbl_44590	none	STRG.6629.1,STRG.6629.3,blat.proc3829873.chain_2764,blat.proc3829873.chain_2769,blat.proc3829873.chain_2771	5	STRG.6629.2,blat.proc3829873.chain_2767	2
scaffold_16	alt_acceptor	303886	303887	-	asmbl_16019	none	STRG.19009.1	1	STRG.19009.2	1
scaffold_15	spliced_intron	12008633	12009314	-	asmbl_15570	none	STRG.18635.1,blat.proc3829895.chain_3343	2	STRG.18635.3,blat.proc3829895.chain_3342	2
scaffold_3	alt_donor	13419480	13419481	-	asmbl_39216	none	STRG.3690.4	1	STRG.3690.2,STRG.3690.5	2
scaffold_5	retained_intron	6853682	6853716	-	asmbl_45540	none	STRG.6091.1	1	STRG.6091.2	1
scaffold_5	starts_in_intron	191564	191564	-	asmbl_45146	none	blat.proc3829889.chain_1683	1	STRG.5582.2,blat.proc3829889.chain_1684	2
scaffold_2	alt_acceptor	11813902	11813903	+	asmbl_24811	none	STRG.2282.1,Trinity_GG_1255_c0_g1_i3,blat.proc3829871.chain_2336	3	STRG.2282.2,Trinity_GG_1255_c0_g1_i1,blat.proc3829871.chain_2337	3
scaffold_15	spliced_intron	6104285	6104570	-	asmbl_15257,asmbl_15259	none	STRG.18262.1,Trinity_GG_27287_c0_g1_i4,blat.proc3829895.chain_3032,blat.proc3829895.chain_3034	4	blat.proc3829895.chain_3033	1
scaffold_5	retained_intron	11802717	11802845	+	asmbl_44432	none	blat.proc3829873.chain_2457	1	STRG.6430.1,Trinity_GG_3440_c0_g1_i2,blat.proc3829873.chain_2455	3
scaffold_15	starts_in_intron	2734387	2734387	-	asmbl_15046	none	Trinity_GG_27126_c0_g1_i2,blat.proc3829895.chain_2718	2	STRG.18048.1,blat.proc3829895.chain_2719	2
scaffold_19	alternate_exon	11483437	11483478	-	asmbl_21612	none	blat.proc3829897.chain_3188	1	STRG.22477.3,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184	3
scaffold_27	starts_in_intron	3090975	3090975	-	asmbl_36842	none	blat.proc3829901.chain_1949	1	STRG.28775.1,STRG.28775.2,STRG.28775.3,STRG.28775.4,STRG.28775.5,blat.proc3829901.chain_1946,blat.proc3829901.chain_1947,blat.proc3829901.chain_1948,blat.proc3829901.chain_1950,blat.proc3829901.chain_1951	10
scaffold_4	retained_exon	4414044	4414070	+	asmbl_42577,asmbl_42589,asmbl_42593	none	STRG.4344.1,STRG.4344.4,blat.proc3829873.chain_682,blat.proc3829873.chain_697	4	STRG.4344.2,blat.proc3829873.chain_683,blat.proc3829873.chain_685	3
scaffold_28	starts_in_intron	7156027	7156027	+	asmbl_38332	none	STRG.29751.4,blat.proc3829885.chain_2848	2	STRG.29751.1,STRG.29751.2,STRG.29751.3,Trinity_GG_16490_c0_g1_i7,blat.proc3829885.chain_2849,blat.proc3829885.chain_2850,blat.proc3829885.chain_2851,blat.proc3829885.chain_2852,blat.proc3829885.chain_2853	9
scaffold_2	spliced_intron	19299385	19299486	-	asmbl_23876	none	STRG.2796.2,blat.proc3829887.chain_2570	2	STRG.2796.1,Trinity_GG_18530_c0_g1_i7,blat.proc3829887.chain_2572,blat.proc3829887.chain_2573,blat.proc3829887.chain_2575	5
scaffold_18	spliced_intron	7199463	7200059	+	asmbl_20750	none	STRG.21415.4	1	STRG.21415.3,Trinity_GG_11823_c0_g1_i2,blat.proc3829881.chain_2374	3
scaffold_4	starts_in_intron	12792543	12792543	+	asmbl_43089	none	blat.proc3829873.chain_1274	1	STRG.4920.1,STRG.4920.2,STRG.4920.3,blat.proc3829873.chain_1273,blat.proc3829873.chain_1275	5
scaffold_22	alt_donor	483798	483799	+	asmbl_29150	none	STRG.24679.2	1	STRG.24679.3,Trinity_GG_13642_c0_g1_i3,blat.proc3829883.chain_1726	3
scaffold_13	retained_intron	6397233	6397368	+	asmbl_10911	none	Trinity_GG_8718_c0_g1_i3,blat.proc3829879.chain_554	2	STRG.15914.2,STRG.15914.4,STRG.15914.5,Trinity_GG_8718_c0_g1_i4,Trinity_GG_8718_c0_g1_i5,Trinity_GG_8718_c0_g1_i8,Trinity_GG_8718_c0_g1_i9,blat.proc3829879.chain_549,blat.proc3829879.chain_550,blat.proc3829879.chain_552,blat.proc3829879.chain_556	11
scaffold_5	skipped_exon	7708375	7708743	+	asmbl_44162,asmbl_44163,asmbl_44164	none	STRG.6139.1,Trinity_GG_3357_c0_g1_i3,blat.proc3829873.chain_2297,blat.proc3829873.chain_2298,blat.proc3829873.chain_2299	5	STRG.6139.2	1
scaffold_19	starts_in_intron	162716	162716	+	asmbl_21983	none	blat.proc3829881.chain_2829	1	STRG.21818.1,blat.proc3829881.chain_2830,blat.proc3829881.chain_2832	3
scaffold_18	alt_donor	4729800	4729801	-	asmbl_19861	none	STRG.21257.2,blat.proc3829897.chain_2121	2	STRG.21257.1,blat.proc3829897.chain_2122	2
scaffold_28	ends_in_intron	5579985	5579985	+	asmbl_38289	none	Trinity_GG_16454_c0_g1_i2,blat.proc3829885.chain_2794	2	STRG.29670.1,STRG.29670.2,Trinity_GG_16454_c0_g1_i4,Trinity_GG_16454_c0_g1_i5,Trinity_GG_16454_c0_g1_i6,blat.proc3829885.chain_2793,blat.proc3829885.chain_2796,blat.proc3829885.chain_2797	8
scaffold_14	spliced_intron	3364505	3364903	-	asmbl_12985	none	STRG.16906.2,blat.proc3829895.chain_1625	2	STRG.16906.1,Trinity_GG_26491_c0_g1_i2,blat.proc3829895.chain_1626	3
scaffold_20	spliced_intron	11695106	11695323	-	asmbl_27115	none	blat.proc3829899.chain_665	1	blat.proc3829899.chain_666	1
scaffold_4	retained_intron	8746476	8746565	+	asmbl_42907	none	Trinity_GG_2591_c0_g1_i4,blat.proc3829873.chain_1033	2	STRG.4689.1,blat.proc3829873.chain_1036	2
scaffold_18	alt_acceptor	7662195	7662196	+	asmbl_20795	none	STRG.21461.1	1	STRG.21461.3	1
scaffold_21	alt_acceptor	8570421	8570422	+	asmbl_28836	none	STRG.24370.1,Trinity_GG_13491_c0_g1_i1,blat.proc3829883.chain_1488	3	STRG.24370.2	1
scaffold_10	alternate_exon	15423151	15423390	+	asmbl_4957	none	blat.proc3829877.chain_1604	1	STRG.13047.1	1
scaffold_10	skipped_exon	7796671	7799332	-	asmbl_3473	none	STRG.12559.3	1	STRG.12559.1,STRG.12559.2,blat.proc3829893.chain_1039,blat.proc3829893.chain_1040	4
scaffold_7	skipped_exon	5097042	5097668	+	asmbl_50666	none	STRG.8843.2,blat.proc3829875.chain_1256	2	STRG.8843.1,blat.proc3829875.chain_1257	2
scaffold_8	spliced_intron	12124410	12124600	-	asmbl_53182	none	STRG.10395.1,blat.proc3829891.chain_2514	2	blat.proc3829891.chain_2513	1
scaffold_5	starts_in_intron	17324201	17324201	+	asmbl_44826,asmbl_44827	none	Trinity_GG_3785_c0_g1_i2,Trinity_GG_3785_c0_g1_i3,Trinity_GG_3785_c0_g1_i5,blat.proc3829873.chain_3020,blat.proc3829873.chain_3021,blat.proc3829873.chain_3022	6	Trinity_GG_3785_c0_g1_i4,Trinity_GG_3785_c0_g1_i6,blat.proc3829873.chain_3019,blat.proc3829873.chain_3024	4
scaffold_2	starts_in_intron	18610999	18610999	-	asmbl_23818	none	STRG.2736.1	1	STRG.2736.3,blat.proc3829887.chain_2518	2
scaffold_4	retained_intron	14647836	14648056	-	asmbl_41809,asmbl_41810,asmbl_41813,asmbl_41815,asmbl_41816	none	STRG.5094.2,STRG.5094.3,blat.proc3829889.chain_1117,blat.proc3829889.chain_1118,blat.proc3829889.chain_1119,blat.proc3829889.chain_1122	6	STRG.5094.1,blat.proc3829889.chain_1121,blat.proc3829889.chain_1123	3
scaffold_4	skipped_exon	5738957	5739769	-	asmbl_41374	none	STRG.4471.1,blat.proc3829889.chain_584	2	STRG.4471.2	1
scaffold_17	retained_intron	5074760	5074970	+	asmbl_17937	none	Trinity_GG_11079_c0_g1_i2,blat.proc3829881.chain_1031	2	STRG.20220.1,blat.proc3829881.chain_1030	2
scaffold_5	retained_intron	19031567	19031895	-	asmbl_46264	none	STRG.7018.6,blat.proc3829889.chain_3007	2	STRG.7018.3,STRG.7018.5,STRG.7018.7,Trinity_GG_20922_c0_g1_i8,blat.proc3829889.chain_3008,blat.proc3829889.chain_3009,blat.proc3829889.chain_3010	7
scaffold_28	alt_acceptor	5217698	5217699	-	asmbl_37577	none	STRG.29649.2	1	STRG.29649.4	1
scaffold_1	ends_in_intron	6821594	6821594	-	asmbl_391	none	STRG.477.2,Trinity_GG_17278_c2_g1_i1,blat.proc3829887.chain_378	3	STRG.477.1	1
scaffold_2	alt_acceptor	15375639	15375640	+	asmbl_25062	none	STRG.2491.2	1	STRG.2491.1,blat.proc3829871.chain_2688	2
scaffold_11	spliced_intron	5258825	5258854	+	asmbl_5521	none	STRG.13602.1	1	STRG.13602.2	1
scaffold_4	ends_in_intron	12792183	12792183	+	asmbl_43088	none	blat.proc3829873.chain_1272	1	STRG.4920.1,STRG.4920.2,STRG.4920.3,blat.proc3829873.chain_1273,blat.proc3829873.chain_1275	5
scaffold_27	starts_in_intron	2997744	2997744	+	asmbl_36120	none	blat.proc3829885.chain_1844	1	STRG.28767.1,STRG.28767.2,STRG.28767.3,Trinity_GG_15918_c0_g1_i12,blat.proc3829885.chain_1840,blat.proc3829885.chain_1842,blat.proc3829885.chain_1843,blat.proc3829885.chain_1845,blat.proc3829885.chain_1848,blat.proc3829885.chain_1849	10
scaffold_10	retained_intron	10273218	10273385	+	asmbl_4689	none	STRG.12705.2	1	STRG.12705.1	1
scaffold_3	alt_donor	14189187	14189188	-	asmbl_39281	none	STRG.3759.2,blat.proc3829887.chain_3546	2	STRG.3759.5	1
scaffold_3	alternate_exon	6079076	6083435	-	asmbl_38849	none	STRG.3254.1,blat.proc3829887.chain_3026,blat.proc3829887.chain_3028	3	blat.proc3829887.chain_3022	1
scaffold_20	alt_acceptor	4262257	4262258	-	asmbl_26651	none	STRG.23096.3	1	STRG.23096.1	1
scaffold_2	retained_intron	18610276	18610519	-	asmbl_23818	none	STRG.2736.1,Trinity_GG_18522_c0_g1_i1,blat.proc3829887.chain_2560	3	STRG.2736.2	1
scaffold_2	alt_acceptor	20209547	20209548	+	asmbl_25341	none	STRG.2860.2	1	STRG.2860.1,blat.proc3829871.chain_3006	2
scaffold_10	alternate_exon	9550674	9550784	+	asmbl_4681,asmbl_4682	none	STRG.12692.4,STRG.12692.5	2	STRG.12692.1,STRG.12692.2,blat.proc3829877.chain_1283	3
scaffold_8	retained_exon	10027347	10027730	-	asmbl_53086,asmbl_53087	none	STRG.10250.1,STRG.10250.2,blat.proc3829891.chain_2348	3	STRG.10250.3	1
scaffold_1	spliced_intron	12452547	12452641	+	asmbl_2209,asmbl_2210	none	STRG.857.1,STRG.857.2,blat.proc3829871.chain_949	3	blat.proc3829871.chain_947	1
scaffold_21	alt_donor	7485704	7485705	-	asmbl_27843	none	STRG.24264.2	1	STRG.24264.1,blat.proc3829899.chain_1336	2
scaffold_2	alternate_exon	7480960	7481073	-	asmbl_23291	none	STRG.2067.2,blat.proc3829887.chain_1960	2	STRG.2067.1,blat.proc3829887.chain_1959	2
scaffold_16	starts_in_intron	4655139	4655139	+	asmbl_16991	none	blat.proc3829881.chain_70	1	STRG.19239.1,STRG.19239.2,blat.proc3829881.chain_71,blat.proc3829881.chain_72	4
scaffold_18	starts_in_intron	9633517	9633517	-	asmbl_20100	none	blat.proc3829897.chain_2401	1	STRG.21568.1,STRG.21568.2,blat.proc3829897.chain_2402,blat.proc3829897.chain_2405	4
scaffold_2	alt_donor	7781621	7781622	+	asmbl_24606,asmbl_24607	none	STRG.2076.5,STRG.2076.6	2	STRG.2076.1,STRG.2076.2,STRG.2076.4,blat.proc3829871.chain_2202,blat.proc3829871.chain_2203,blat.proc3829871.chain_2205,blat.proc3829871.chain_2208,blat.proc3829871.chain_2211,blat.proc3829871.chain_2213	9
scaffold_27	ends_in_intron	2699468	2699468	-	asmbl_36797	none	Trinity_GG_33103_c0_g1_i4,blat.proc3829901.chain_1931	2	STRG.28731.1,STRG.28731.2,blat.proc3829901.chain_1929,blat.proc3829901.chain_1930	4
scaffold_1	alt_acceptor	855086	855087	+	asmbl_1424,asmbl_1425,asmbl_1426	none	STRG.42.1,STRG.42.2,STRG.42.3	3	STRG.42.6,Trinity_GG_38_c0_g1_i9,blat.proc3829871.chain_70	3
scaffold_23	ends_in_intron	5015114	5015114	-	asmbl_31598	none	blat.proc3829899.chain_2904	1	STRG.25864.1,blat.proc3829899.chain_2902	2
scaffold_17	skipped_exon	7046365	7049246	+	asmbl_18019	none	STRG.20358.2,blat.proc3829881.chain_1120	2	blat.proc3829881.chain_1119	1
scaffold_9	spliced_intron	11028497	11028576	-	asmbl_55233	none	STRG.11403.1	1	STRG.11403.2	1
scaffold_17	alt_acceptor	1292002	1292003	-	asmbl_18724,asmbl_18725	none	STRG.19952.1,STRG.19952.4,blat.proc3829897.chain_840,blat.proc3829897.chain_843	4	STRG.19952.3,blat.proc3829897.chain_836,blat.proc3829897.chain_838	3
scaffold_15	alt_acceptor	13659430	13659431	+	asmbl_14593	none	STRG.18785.2	1	STRG.18785.1,blat.proc3829879.chain_3368	2
scaffold_20	alt_donor	11679394	11679395	-	asmbl_27107	none	STRG.23659.1,blat.proc3829899.chain_657	2	STRG.23659.3,blat.proc3829899.chain_658	2
scaffold_15	starts_in_intron	12009469	12009469	-	asmbl_15571	none	STRG.18635.3	1	STRG.18635.1,STRG.18635.2,blat.proc3829895.chain_3341,blat.proc3829895.chain_3342,blat.proc3829895.chain_3343	5
scaffold_9	retained_intron	9706825	9707265	+	asmbl_54211	none	STRG.11336.3,Trinity_GG_6324_c1_g1_i12,blat.proc3829877.chain_113	3	STRG.11336.1,blat.proc3829877.chain_110	2
scaffold_22	alternate_exon	511312	511407	-	asmbl_29856	none	Trinity_GG_30818_c0_g1_i1,blat.proc3829899.chain_1822	2	Trinity_GG_30818_c0_g1_i8,blat.proc3829899.chain_1825	2
scaffold_13	starts_in_intron	15752438	15752438	+	asmbl_11516	none	Trinity_GG_9155_c0_g1_i1,blat.proc3829879.chain_1358	2	Trinity_GG_9155_c0_g1_i3,blat.proc3829879.chain_1355	2
scaffold_22	retained_intron	4788211	4788482	-	asmbl_30042	none	STRG.24884.1,blat.proc3829899.chain_1922	2	STRG.24884.2,blat.proc3829899.chain_1923	2
scaffold_10	alternate_exon	8328708	8329037	-	asmbl_3496	none	STRG.12584.3	1	STRG.12584.1	1
scaffold_17	retained_intron	8317665	8317806	+	asmbl_18093,asmbl_18100	none	STRG.20443.1,blat.proc3829881.chain_1253	2	blat.proc3829881.chain_1251	1
scaffold_2	retained_intron	15274632	15274740	+	asmbl_25043	none	blat.proc3829871.chain_2536	1	STRG.2481.1,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	8
scaffold_14	alternate_exon	4602054	4602117	+	asmbl_11979	none	STRG.16979.2	1	STRG.16979.1,Trinity_GG_9304_c0_g1_i1,blat.proc3829879.chain_1646	3
scaffold_5	retained_intron	5045141	5046460	+	asmbl_43993	none	Trinity_GG_3261_c0_g2_i1,blat.proc3829873.chain_2109,blat.proc3829873.chain_2111	3	STRG.5951.1,blat.proc3829873.chain_2107	2
scaffold_6	alternate_exon	877833	877868	+	asmbl_46636	none	STRG.7151.1	1	STRG.7151.3	1
scaffold_9	alt_acceptor	8181503	8181504	+	asmbl_54145	none	Trinity_GG_6281_c0_g1_i4,blat.proc3829877.chain_12,blat.proc3829877.chain_9	3	STRG.11240.1,blat.proc3829877.chain_10,blat.proc3829877.chain_11	3
scaffold_12	alt_donor	8915430	8915431	+	asmbl_8804	none	STRG.14884.1,blat.proc3829877.chain_3414	2	STRG.14884.2	1
scaffold_13	alt_acceptor	11581734	11581735	+	asmbl_11266	none	STRG.16293.1	1	STRG.16293.2,STRG.16293.3,blat.proc3829879.chain_1061,blat.proc3829879.chain_1064,blat.proc3829879.chain_1065	5
scaffold_8	retained_intron	4865417	4865526	+	asmbl_51853	none	blat.proc3829875.chain_2440	1	STRG.9939.1,blat.proc3829875.chain_2441	2
scaffold_8	starts_in_intron	6309079	6309079	+	asmbl_51946,asmbl_51949	none	Trinity_GG_5540_c0_g2_i1,blat.proc3829875.chain_2464,blat.proc3829875.chain_2465	3	STRG.10028.1,blat.proc3829875.chain_2461,blat.proc3829875.chain_2462	3
scaffold_2	retained_intron	13397950	13398180	+	asmbl_24873,asmbl_24878	none	STRG.2357.1,Trinity_GG_1292_c0_g1_i3,blat.proc3829871.chain_2408,blat.proc3829871.chain_2410	4	STRG.2357.2,blat.proc3829871.chain_2405,blat.proc3829871.chain_2407	3
scaffold_1	starts_in_intron	7603738	7603738	+	asmbl_1902	none	blat.proc3829871.chain_587	1	STRG.529.1,blat.proc3829871.chain_588	2
scaffold_6	starts_in_intron	6942625	6942625	+	asmbl_46961	none	STRG.7596.3,Trinity_GG_4158_c0_g1_i1,blat.proc3829873.chain_3705	3	STRG.7596.1,STRG.7596.2,blat.proc3829873.chain_3706,blat.proc3829873.chain_3708	4
scaffold_1	starts_in_intron	5706353	5706353	+	asmbl_1748	none	Trinity_GG_246_c0_g1_i6,blat.proc3829871.chain_430	2	STRG.369.1,blat.proc3829871.chain_429,blat.proc3829871.chain_431,blat.proc3829871.chain_432,blat.proc3829871.chain_433	5
scaffold_4	retained_intron	4912273	4912392	+	asmbl_42641,asmbl_42644,asmbl_42645	none	STRG.4386.1,STRG.4386.2,Trinity_GG_2443_c0_g1_i3,blat.proc3829873.chain_779,blat.proc3829873.chain_780	5	STRG.4386.3,blat.proc3829873.chain_777	2
scaffold_13	alternate_exon	7504556	7506361	-	asmbl_9847	none	STRG.16034.3,Trinity_GG_26030_c0_g1_i4,blat.proc3829895.chain_819	3	Trinity_GG_26030_c0_g1_i10,blat.proc3829895.chain_816	2
scaffold_3	skipped_exon	13161152	13161618	+	asmbl_40383	none	STRG.3678.4	1	STRG.3678.1,STRG.3678.2,STRG.3678.3,blat.proc3829873.chain_36,blat.proc3829873.chain_37,blat.proc3829873.chain_39	6
scaffold_26	alt_donor	6351170	6351171	-	asmbl_34952,asmbl_34953	none	STRG.28315.2,STRG.28315.3,blat.proc3829901.chain_1403,blat.proc3829901.chain_1404	4	STRG.28315.5,blat.proc3829901.chain_1406	2
scaffold_19	alt_acceptor	6212920	6212921	+	asmbl_22202	none	STRG.22141.3,blat.proc3829881.chain_3089	2	STRG.22141.1,STRG.22141.2,STRG.22141.4,Trinity_GG_12238_c0_g1_i3,blat.proc3829881.chain_3087,blat.proc3829881.chain_3088,blat.proc3829881.chain_3090	7
scaffold_11	starts_in_intron	2812496	2812496	-	asmbl_6492	none	Trinity_GG_34271_c0_g1_i2	1	STRG.13393.1	1
scaffold_5	alt_donor	8132808	8132809	+	asmbl_44194	none	blat.proc3829873.chain_2318	1	STRG.6170.2,blat.proc3829873.chain_2321	2
scaffold_27	alt_donor	3865858	3865859	+	asmbl_36188	none	blat.proc3829885.chain_1969	1	STRG.28827.2	1
scaffold_28	retained_intron	2810466	2811309	-	asmbl_37409,asmbl_37412,asmbl_37413	none	blat.proc3829901.chain_2492,blat.proc3829901.chain_2495,blat.proc3829901.chain_2496	3	blat.proc3829901.chain_2493	1
scaffold_7	alt_acceptor	13213475	13213476	+	asmbl_51201,asmbl_51205	none	STRG.9420.3,blat.proc3829875.chain_1879	2	STRG.9420.4	1
scaffold_3	spliced_intron	800441	800585	-	asmbl_38633,asmbl_38634	none	STRG.2910.1,STRG.2910.2,blat.proc3829887.chain_2740,blat.proc3829887.chain_2741	4	STRG.2910.4,Trinity_GG_18623_c0_g1_i2,blat.proc3829887.chain_2742	3
scaffold_4	alternate_exon	12437819	12438419	+	asmbl_43053	none	STRG.4882.1,blat.proc3829873.chain_1222	2	STRG.4882.2,blat.proc3829873.chain_1221	2
scaffold_10	starts_in_intron	11595983	11595983	+	asmbl_4754	none	Trinity_GG_7057_c0_g1_i1,blat.proc3829877.chain_1364	2	STRG.12807.1	1
scaffold_14	retained_exon	8216075	8216119	-	asmbl_13238	none	STRG.17218.3,blat.proc3829895.chain_1931	2	STRG.17218.2,Trinity_GG_26673_c0_g1_i5,blat.proc3829895.chain_1928,blat.proc3829895.chain_1929,blat.proc3829895.chain_1932	5
scaffold_17	spliced_intron	8626666	8626834	+	asmbl_18137	none	STRG.20466.1,Trinity_GG_11185_c0_g1_i3,blat.proc3829881.chain_1210	3	Trinity_GG_11185_c0_g1_i1,blat.proc3829881.chain_1209	2
scaffold_26	retained_intron	9775764	9775840	+	asmbl_35778,asmbl_35779,asmbl_35781,asmbl_35786,asmbl_35788	none	STRG.28501.1,STRG.28501.10,STRG.28501.3,STRG.28501.6,STRG.28501.9,Trinity_GG_15770_c0_g1_i1,blat.proc3829885.chain_1533,blat.proc3829885.chain_1538	8	STRG.28501.2,STRG.28501.4	2
scaffold_16	spliced_intron	2386305	2386343	-	asmbl_16137	none	STRG.19122.3	1	STRG.19122.1,blat.proc3829897.chain_139	2
scaffold_11	spliced_intron	11996973	11997304	-	asmbl_7036,asmbl_7037,asmbl_7038,asmbl_7039	none	STRG.14111.1,STRG.14111.2,STRG.14111.3,Trinity_GG_24898_c0_g1_i1,Trinity_GG_24898_c0_g1_i3,Trinity_GG_24898_c0_g1_i4,Trinity_GG_24898_c0_g1_i5,blat.proc3829893.chain_2513,blat.proc3829893.chain_2515,blat.proc3829893.chain_2516	10	STRG.14111.4,Trinity_GG_24898_c0_g1_i2,blat.proc3829893.chain_2514	3
scaffold_17	starts_in_intron	8875326	8875326	-	asmbl_19180	none	blat.proc3829897.chain_1362	1	STRG.20495.1	1
scaffold_20	spliced_intron	4478711	4479160	-	asmbl_26654,asmbl_26655,asmbl_26656,asmbl_26660	none	STRG.23113.1,STRG.23113.2,STRG.23113.3,blat.proc3829899.chain_56,blat.proc3829899.chain_59	5	blat.proc3829899.chain_55,blat.proc3829899.chain_58	2
scaffold_28	spliced_intron	3037644	3038209	-	asmbl_37452	none	blat.proc3829901.chain_2612	1	STRG.29487.1,Trinity_GG_33544_c0_g1_i2,blat.proc3829901.chain_2611	3
scaffold_24	skipped_exon	721142	722300	+	asmbl_32048	none	STRG.26331.1,Trinity_GG_14541_c1_g1_i1,blat.proc3829883.chain_3228	3	STRG.26331.2	1
scaffold_6	alternate_exon	12632330	12632548	+	asmbl_47358	none	STRG.8015.2,blat.proc3829875.chain_334	2	STRG.8015.1	1
scaffold_17	alternate_exon	9845951	9852012	-	asmbl_19252	none	STRG.20594.1,blat.proc3829897.chain_1532	2	STRG.20594.3,Trinity_GG_28589_c1_g1_i1,blat.proc3829897.chain_1534	3
scaffold_20	alt_acceptor	5907844	5907845	+	asmbl_25797	none	STRG.23182.3	1	STRG.23182.1	1
scaffold_8	alternate_exon	15683863	15684691	-	asmbl_53340	none	STRG.10564.1,Trinity_GG_22882_c1_g1_i1,blat.proc3829891.chain_2712	3	STRG.10564.2,Trinity_GG_22882_c0_g1_i2,blat.proc3829891.chain_2709	3
scaffold_8	ends_in_intron	9478688	9478688	-	asmbl_53043	none	blat.proc3829891.chain_2371	1	STRG.10199.1,blat.proc3829891.chain_2372,blat.proc3829891.chain_2373,blat.proc3829891.chain_2375	4
scaffold_19	alt_donor	10302844	10302845	+	asmbl_22448	none	STRG.22402.4,Trinity_GG_12396_c0_g1_i3,blat.proc3829881.chain_3352	3	STRG.22402.1,blat.proc3829881.chain_3351	2
scaffold_13	retained_intron	4532541	4532619	+	asmbl_10791	none	STRG.15766.1,Trinity_GG_8662_c0_g1_i2,blat.proc3829879.chain_447	3	STRG.15766.2,Trinity_GG_8662_c0_g1_i1,blat.proc3829879.chain_446	3
scaffold_9	spliced_intron	16569591	16569821	+	asmbl_54573,asmbl_54578	none	Trinity_GG_6586_c0_g1_i14,Trinity_GG_6586_c0_g1_i23,blat.proc3829877.chain_552,blat.proc3829877.chain_558	4	Trinity_GG_6586_c0_g1_i21,blat.proc3829877.chain_554	2
scaffold_20	alternate_exon	238032	239418	-	asmbl_26404	none	STRG.22700.2	1	STRG.22700.3	1
scaffold_24	alt_donor	10485869	10485870	+	asmbl_32572,asmbl_32573,asmbl_32574,asmbl_32578,asmbl_32579,asmbl_32580	none	STRG.27000.2,STRG.27000.3,STRG.27000.4,STRG.27000.5,Trinity_GG_14920_c0_g1_i2,Trinity_GG_14920_c0_g1_i6,Trinity_GG_14920_c0_g1_i7,blat.proc3829885.chain_127,blat.proc3829885.chain_128,blat.proc3829885.chain_130	10	STRG.27000.1,Trinity_GG_14920_c0_g1_i4,Trinity_GG_14920_c0_g1_i5,blat.proc3829885.chain_126,blat.proc3829885.chain_129	5
scaffold_14	retained_intron	8416699	8416856	+	asmbl_12223,asmbl_12225	none	STRG.17265.2,blat.proc3829879.chain_2010	2	STRG.17265.1,blat.proc3829879.chain_2011,blat.proc3829879.chain_2012	3
scaffold_7	alternate_exon	4044720	4045550	-	asmbl_49662	none	blat.proc3829891.chain_1134	1	STRG.8793.3,blat.proc3829891.chain_1137	2
scaffold_7	retained_exon	689481	689645	+	asmbl_50437	none	STRG.8594.2	1	STRG.8594.4	1
scaffold_7	spliced_intron	8326608	8326876	-	asmbl_49819	none	STRG.9060.1,blat.proc3829891.chain_1315	2	Trinity_GG_22126_c0_g1_i8,blat.proc3829891.chain_1317	2
scaffold_1	retained_intron	14355835	14355988	-	asmbl_907	none	blat.proc3829887.chain_908	1	blat.proc3829887.chain_909	1
scaffold_22	retained_intron	11731907	11731990	+	asmbl_29712	none	Trinity_GG_14080_c0_g1_i2	1	Trinity_GG_14080_c0_g1_i1	1
scaffold_21	spliced_intron	7999512	7999684	-	asmbl_27898,asmbl_27899,asmbl_27900,asmbl_27901	none	STRG.24325.1,STRG.24325.2,STRG.24325.3,STRG.24325.4,blat.proc3829899.chain_1424,blat.proc3829899.chain_1426,blat.proc3829899.chain_1427,blat.proc3829899.chain_1428	8	blat.proc3829899.chain_1429	1
scaffold_10	starts_in_intron	16530743	16530743	+	asmbl_4996	none	STRG.13112.2	1	STRG.13112.1,blat.proc3829877.chain_1619,blat.proc3829877.chain_1620,blat.proc3829877.chain_1621,blat.proc3829877.chain_1622	5
scaffold_25	alternate_exon	8700444	8702377	-	asmbl_34437	none	STRG.27678.5	1	STRG.27678.4,Trinity_GG_32508_c1_g1_i1,blat.proc3829901.chain_955,blat.proc3829901.chain_961	4
scaffold_11	retained_intron	15637023	15637151	+	asmbl_6101	none	STRG.14286.2	1	STRG.14286.1,blat.proc3829877.chain_2767	2
scaffold_16	starts_in_intron	14659332	14659332	-	asmbl_16673	none	Trinity_GG_28153_c0_g1_i1,blat.proc3829897.chain_811	2	STRG.19849.1,STRG.19849.2,blat.proc3829897.chain_809,blat.proc3829897.chain_810	4
scaffold_22	alt_acceptor	6874747	6874748	+	asmbl_29423	none	STRG.24988.2,blat.proc3829883.chain_2051	2	STRG.24988.1,blat.proc3829883.chain_2050	2
scaffold_3	spliced_intron	14334025	14334182	-	asmbl_39309,asmbl_39310	none	STRG.3779.1,STRG.3779.2,Trinity_GG_19094_c0_g1_i1,Trinity_GG_19094_c0_g1_i2,blat.proc3829887.chain_3554,blat.proc3829887.chain_3556	6	STRG.3779.3,Trinity_GG_19094_c0_g1_i4,blat.proc3829887.chain_3555	3
scaffold_19	alt_acceptor	2780919	2780920	+	asmbl_22078	none	STRG.21950.2	1	STRG.21950.3,STRG.21950.4	2
scaffold_14	starts_in_intron	12219655	12219655	-	asmbl_13541	none	blat.proc3829895.chain_2261	1	STRG.17537.1,blat.proc3829895.chain_2260,blat.proc3829895.chain_2263	3
scaffold_10	spliced_intron	9041499	9041894	+	asmbl_4637	none	STRG.12644.1,blat.proc3829877.chain_1219	2	Trinity_GG_6976_c0_g1_i1,Trinity_GG_6976_c0_g1_i2,blat.proc3829877.chain_1218,blat.proc3829877.chain_1220	4
scaffold_3	retained_exon	935830	935956	-	asmbl_38640	none	STRG.2915.1,blat.proc3829887.chain_2737	2	blat.proc3829887.chain_2736	1
scaffold_23	alt_acceptor	5619885	5619886	-	asmbl_31646,asmbl_31648	none	STRG.25917.2,blat.proc3829899.chain_3024,blat.proc3829899.chain_3026	3	STRG.25917.3,Trinity_GG_31507_c0_g1_i1,blat.proc3829899.chain_3023,blat.proc3829899.chain_3025	4
scaffold_11	alt_acceptor	8024109	8024110	+	asmbl_5671	none	STRG.13795.1,Trinity_GG_7598_c0_g1_i1,blat.proc3829877.chain_2271	3	STRG.13795.2	1
scaffold_18	spliced_intron	8863627	8864527	-	asmbl_20060,asmbl_20061,asmbl_20062,asmbl_20065,asmbl_20066,asmbl_20067,asmbl_20068	none	STRG.21541.1,STRG.21541.2,STRG.21541.3,blat.proc3829897.chain_2356,blat.proc3829897.chain_2357,blat.proc3829897.chain_2358,blat.proc3829897.chain_2359,blat.proc3829897.chain_2360,blat.proc3829897.chain_2362	9	Trinity_GG_29045_c0_g1_i9,blat.proc3829897.chain_2355	2
scaffold_17	retained_intron	4498	4819	+	asmbl_17657,asmbl_17658	none	STRG.19872.1,STRG.19872.2,Trinity_GG_10890_c0_g1_i1,Trinity_GG_10890_c0_g1_i2,blat.proc3829881.chain_723,blat.proc3829881.chain_724	6	STRG.19872.3	1
scaffold_2	alternate_exon	17981858	17982074	+	asmbl_25248	none	STRG.2688.3,blat.proc3829871.chain_2905	2	STRG.2688.1,STRG.2688.2,blat.proc3829871.chain_2904	3
scaffold_12	retained_intron	110425	111191	-	asmbl_7412	none	STRG.14410.2,blat.proc3829893.chain_2828	2	STRG.14410.1,blat.proc3829893.chain_2827	2
scaffold_3	alt_donor	11795534	11795535	-	asmbl_39146	none	STRG.3609.1,Trinity_GG_18990_c0_g1_i2,blat.proc3829887.chain_3383	3	STRG.3609.2,Trinity_GG_18990_c0_g1_i1,blat.proc3829887.chain_3384	3
scaffold_5	spliced_intron	10135753	10135836	+	asmbl_44325	none	STRG.6303.1,blat.proc3829873.chain_2354,blat.proc3829873.chain_2357	3	blat.proc3829873.chain_2356	1
scaffold_5	starts_in_intron	18515058	18515058	-	asmbl_46218	none	STRG.6974.1,blat.proc3829889.chain_2930	2	STRG.6974.3,blat.proc3829889.chain_2931	2
scaffold_8	spliced_intron	13138179	13138853	-	asmbl_53270,asmbl_53271,asmbl_53273,asmbl_53274	none	STRG.10481.1,STRG.10481.2,STRG.10481.3,blat.proc3829891.chain_2640,blat.proc3829891.chain_2642	5	blat.proc3829891.chain_2641	1
scaffold_15	starts_in_intron	9870207	9870207	+	asmbl_14374	none	blat.proc3829879.chain_3060	1	STRG.18515.1,blat.proc3829879.chain_3062,blat.proc3829879.chain_3065	3
scaffold_531	starts_in_intron	1098	1098	-	asmbl_46496	none	Trinity_GG_34026_c0_g1_i1	1	STRG.30334.1,STRG.30334.2	2
scaffold_5	spliced_intron	8751102	8751176	+	asmbl_44231	none	STRG.6201.1,blat.proc3829873.chain_2314	2	blat.proc3829873.chain_2315	1
scaffold_7	alternate_exon	12259957	12260865	+	asmbl_51106	none	Trinity_GG_5126_c0_g1_i1,blat.proc3829875.chain_1683	2	STRG.9311.2,Trinity_GG_5126_c0_g1_i2,blat.proc3829875.chain_1685	3
scaffold_5	retained_intron	12842254	12842348	+	asmbl_44497,asmbl_44499	none	STRG.6508.2,Trinity_GG_3545_c0_g1_i1,blat.proc3829873.chain_2642	3	STRG.6508.1,STRG.6508.3,Trinity_GG_3545_c0_g1_i3,blat.proc3829873.chain_2643	4
scaffold_4	starts_in_intron	18247381	18247381	-	asmbl_42103	none	blat.proc3829889.chain_1490	1	STRG.5420.1,blat.proc3829889.chain_1491	2
scaffold_11	alt_acceptor	4730714	4730715	+	asmbl_5469	none	STRG.13549.1,blat.proc3829877.chain_1987	2	STRG.13549.2,blat.proc3829877.chain_1988	2
scaffold_8	alternate_exon	9281834	9281867	+	asmbl_52052	none	STRG.10179.2,blat.proc3829875.chain_2675	2	STRG.10179.1,blat.proc3829875.chain_2674	2
scaffold_23	retained_exon	5765227	5765316	-	asmbl_31661	none	STRG.25927.3,STRG.25927.4,Trinity_GG_31528_c0_g2_i2,blat.proc3829899.chain_3059	4	STRG.25927.2,Trinity_GG_31528_c0_g2_i1,blat.proc3829899.chain_3060	3
scaffold_10	retained_intron	13280730	13280885	+	asmbl_4860,asmbl_4861	none	Trinity_GG_7120_c0_g1_i1,Trinity_GG_7120_c0_g1_i2,blat.proc3829877.chain_1486,blat.proc3829877.chain_1487	4	STRG.12911.1	1
scaffold_6	alternate_exon	3321028	3321119	+	asmbl_46775	none	STRG.7330.1,blat.proc3829873.chain_3436	2	STRG.7330.2,Trinity_GG_4014_c0_g1_i1,blat.proc3829873.chain_3437	3
scaffold_15	skipped_exon	15448589	15449160	+	asmbl_14738	none	Trinity_GG_10389_c0_g1_i2,blat.proc3829879.chain_3560	2	STRG.18933.1,STRG.18933.2,Trinity_GG_10389_c0_g1_i7,blat.proc3829879.chain_3564,blat.proc3829879.chain_3565	5
scaffold_15	alt_donor	6197250	6197251	+	asmbl_14190,asmbl_14191	none	STRG.18272.1,STRG.18272.5	2	STRG.18272.2,STRG.18272.4	2
scaffold_11	alt_acceptor	1305168	1305169	-	asmbl_6402	none	STRG.13304.1,blat.proc3829893.chain_1781	2	blat.proc3829893.chain_1780	1
scaffold_3	alt_donor	5129744	5129745	-	asmbl_38788	none	STRG.3205.3,blat.proc3829887.chain_2932	2	STRG.3205.2,blat.proc3829887.chain_2930	2
scaffold_3	alt_acceptor	7220626	7220627	-	asmbl_38909	none	STRG.3321.1,blat.proc3829887.chain_3092	2	STRG.3321.2,blat.proc3829887.chain_3091	2
scaffold_26	alt_acceptor	9775967	9775968	+	asmbl_35787,asmbl_35789,asmbl_35790	none	STRG.28501.5,blat.proc3829885.chain_1532,blat.proc3829885.chain_1535	3	STRG.28501.2,STRG.28501.4	2
scaffold_9	spliced_intron	11842071	11842161	-	asmbl_55293,asmbl_55294,asmbl_55296,asmbl_55297,asmbl_55299	none	STRG.11491.1,blat.proc3829891.chain_3619,blat.proc3829891.chain_3620,blat.proc3829891.chain_3623,blat.proc3829891.chain_3624,blat.proc3829891.chain_3625,blat.proc3829891.chain_3626	7	blat.proc3829891.chain_3622	1
scaffold_22	alt_acceptor	6956522	6956523	-	asmbl_30117,asmbl_30118	none	STRG.25002.2,STRG.25002.3	2	STRG.25002.1	1
scaffold_24	alt_donor	1517705	1517706	+	asmbl_32088	none	STRG.26383.1,blat.proc3829899.chain_3429	2	STRG.26383.2	1
scaffold_26	retained_exon	3941905	3941985	-	asmbl_34789	none	STRG.28066.2,blat.proc3829901.chain_1288	2	STRG.28066.1	1
scaffold_4	spliced_intron	14086400	14086753	+	asmbl_43172	none	STRG.5028.1,Trinity_GG_2786_c0_g1_i2,blat.proc3829873.chain_1324	3	STRG.5028.3,Trinity_GG_2786_c0_g1_i1,blat.proc3829873.chain_1325	3
scaffold_15	alt_donor	2782603	2782604	-	asmbl_15054	none	blat.proc3829895.chain_2771	1	STRG.18054.2,STRG.18054.3	2
scaffold_8	alternate_exon	11049585	11049650	+	asmbl_52179,asmbl_52180	none	STRG.10308.2,blat.proc3829875.chain_2827	2	STRG.10308.1,blat.proc3829875.chain_2826,blat.proc3829875.chain_2828	3
scaffold_6	alt_donor	13919161	13919162	-	asmbl_48896	none	STRG.8132.3	1	STRG.8132.2,blat.proc3829891.chain_438	2
scaffold_3	spliced_intron	14259319	14259409	+	asmbl_40463,asmbl_40464,asmbl_40467,asmbl_40468	none	STRG.3764.1,STRG.3764.2,Trinity_GG_2074_c0_g1_i4,blat.proc3829873.chain_102,blat.proc3829873.chain_104,blat.proc3829873.chain_105,blat.proc3829873.chain_106	7	STRG.3764.4,Trinity_GG_2074_c0_g1_i1,blat.proc3829873.chain_103	3
scaffold_2	alt_acceptor	19194776	19194777	-	asmbl_23869	none	STRG.2791.3	1	STRG.2791.2,blat.proc3829871.chain_2955	2
scaffold_14	retained_exon	14386295	14386355	+	asmbl_12532	none	STRG.17683.2	1	STRG.17683.1	1
scaffold_16	starts_in_intron	4490639	4490639	+	asmbl_16978	none	Trinity_GG_10493_c0_g1_i2,blat.proc3829881.chain_6	2	STRG.19232.1,Trinity_GG_10493_c0_g1_i1,blat.proc3829881.chain_5	3
scaffold_8	spliced_intron	16396748	16397082	-	asmbl_53389,asmbl_53390,asmbl_53394,asmbl_53395,asmbl_53396,asmbl_53397,asmbl_53398,asmbl_53399	none	STRG.10619.1,STRG.10619.2,blat.proc3829891.chain_2683,blat.proc3829891.chain_2684,blat.proc3829891.chain_2685,blat.proc3829891.chain_2686,blat.proc3829891.chain_2687,blat.proc3829891.chain_2688,blat.proc3829891.chain_2689,blat.proc3829891.chain_2691	10	Trinity_GG_22871_c0_g1_i9,blat.proc3829891.chain_2690	2
scaffold_5	alternate_exon	5738076	5739398	+	asmbl_44028	none	STRG.5984.2,blat.proc3829873.chain_2047	2	STRG.5984.3,blat.proc3829873.chain_2049	2
scaffold_26	alternate_exon	5980626	5983272	+	asmbl_35588	none	Trinity_GG_15650_c0_g1_i4,blat.proc3829885.chain_1325	2	STRG.28298.2	1
scaffold_43	spliced_intron	829	922	-	asmbl_43673,asmbl_43674	none	STRG.30025.1,STRG.30025.5	2	STRG.30025.2	1
scaffold_22	alternate_exon	4570655	4574638	+	asmbl_29309	none	STRG.24870.1,Trinity_GG_13743_c0_g1_i5,blat.proc3829883.chain_1908	3	STRG.24870.2,blat.proc3829883.chain_1903,blat.proc3829883.chain_1904	3
scaffold_10	spliced_intron	713246	713732	-	asmbl_2904,asmbl_2905,asmbl_2907	none	STRG.11948.1,STRG.11948.2,Trinity_GG_23680_c0_g1_i4,Trinity_GG_23680_c0_g1_i7,blat.proc3829893.chain_434,blat.proc3829893.chain_436	6	Trinity_GG_23680_c0_g1_i3,blat.proc3829893.chain_437	2
scaffold_26	retained_intron	9774454	9775593	+	asmbl_35777,asmbl_35778,asmbl_35779,asmbl_35780,asmbl_35787,asmbl_35789	none	STRG.28501.2,STRG.28501.4,STRG.28501.6,STRG.28501.9,Trinity_GG_15770_c0_g1_i1,blat.proc3829885.chain_1532,blat.proc3829885.chain_1533,blat.proc3829885.chain_1535,blat.proc3829885.chain_1538	9	STRG.28501.1,STRG.28501.10,STRG.28501.3,STRG.28501.5	4
scaffold_26	alt_acceptor	5489695	5489696	+	asmbl_35526	none	STRG.28241.4	1	blat.proc3829885.chain_1190	1
scaffold_24	retained_intron	10605221	10605541	+	asmbl_32585	none	blat.proc3829885.chain_138	1	blat.proc3829885.chain_141	1
scaffold_6	starts_in_intron	12653794	12653794	+	asmbl_47365	none	Trinity_GG_4365_c0_g1_i3,blat.proc3829875.chain_368	2	STRG.8019.1,blat.proc3829875.chain_365,blat.proc3829875.chain_366	3
scaffold_6	alt_acceptor	13230105	13230106	+	asmbl_47448	none	blat.proc3829875.chain_500	1	STRG.8077.1,STRG.8077.2,STRG.8077.3,STRG.8077.4,STRG.8077.5,STRG.8077.6,STRG.8077.7,blat.proc3829875.chain_501,blat.proc3829875.chain_503,blat.proc3829875.chain_504,blat.proc3829875.chain_506	11
scaffold_8	alt_acceptor	9903939	9903940	-	asmbl_53060,asmbl_53061	none	STRG.10235.1,Trinity_GG_22721_c0_g1_i2,blat.proc3829891.chain_2393,blat.proc3829891.chain_2395	4	blat.proc3829891.chain_2394	1
scaffold_28	skipped_exon	1431687	1434129	-	asmbl_37312,asmbl_37314	none	STRG.29325.1,STRG.29325.3,blat.proc3829901.chain_2398	3	STRG.29325.2,blat.proc3829901.chain_2399	2
scaffold_5	skipped_exon	18818689	18820189	+	asmbl_44945	none	STRG.7001.2	1	STRG.7001.1,blat.proc3829873.chain_3138	2
scaffold_7	alt_donor	16905365	16905366	-	asmbl_50242	none	STRG.9590.1	1	STRG.9590.2	1
scaffold_19	spliced_intron	13224244	13224327	-	asmbl_21826,asmbl_21827,asmbl_21834,asmbl_21842,asmbl_21843	none	STRG.22682.1,STRG.22682.3,Trinity_GG_29598_c1_g1_i4,Trinity_GG_29598_c1_g1_i7,blat.proc3829897.chain_3359,blat.proc3829897.chain_3363,blat.proc3829897.chain_3366,blat.proc3829897.chain_3368,blat.proc3829897.chain_3370	9	blat.proc3829897.chain_3360	1
scaffold_3	retained_intron	13801022	13801246	-	asmbl_39253,asmbl_39254,asmbl_39255	none	STRG.3721.1,Trinity_GG_19038_c0_g1_i1,Trinity_GG_19038_c0_g1_i4,blat.proc3829887.chain_3467,blat.proc3829887.chain_3469	5	STRG.3721.2,blat.proc3829887.chain_3468	2
scaffold_1	starts_in_intron	12760439	12760439	-	asmbl_767	none	STRG.894.2	1	STRG.894.1,blat.proc3829887.chain_750,blat.proc3829887.chain_751,blat.proc3829887.chain_752	4
scaffold_5	alt_acceptor	11602160	11602161	-	asmbl_45797	none	STRG.6413.2	1	STRG.6413.1	1
scaffold_16	starts_in_intron	3869007	3869007	-	asmbl_16182	none	blat.proc3829897.chain_222	1	STRG.19184.1,STRG.19184.2,STRG.19184.3,blat.proc3829897.chain_216,blat.proc3829897.chain_217	5
scaffold_7	retained_intron	15248021	15248121	+	asmbl_51301,asmbl_51304	none	Trinity_GG_5316_c0_g1_i1,blat.proc3829875.chain_2037,blat.proc3829875.chain_2040	3	STRG.9529.1,STRG.9529.2,STRG.9529.3,blat.proc3829875.chain_2038,blat.proc3829875.chain_2039,blat.proc3829875.chain_2041,blat.proc3829875.chain_2042	7
scaffold_11	retained_intron	11783168	11783654	+	asmbl_5964	none	STRG.14087.4	1	STRG.14087.3	1
scaffold_15	alternate_exon	15353613	15353700	+	asmbl_14709	none	Trinity_GG_10368_c0_g1_i4,blat.proc3829879.chain_3501	2	STRG.18909.1,STRG.18909.2,blat.proc3829879.chain_3500,blat.proc3829879.chain_3502,blat.proc3829879.chain_3504	5
scaffold_23	starts_in_intron	4166183	4166183	+	asmbl_30791,asmbl_30792	none	blat.proc3829883.chain_2697,blat.proc3829883.chain_2699	2	STRG.25817.1	1
scaffold_2	alt_acceptor	10376040	10376041	-	asmbl_23432	none	STRG.2212.2	1	STRG.2212.1,blat.proc3829887.chain_2109,blat.proc3829887.chain_2111	3
scaffold_10	alt_donor	17700902	17700903	+	asmbl_5070	none	blat.proc3829893.chain_1652	1	blat.proc3829893.chain_1653	1
scaffold_27	starts_in_intron	9330495	9330495	-	asmbl_37085	none	blat.proc3829901.chain_2278	1	STRG.29165.1,STRG.29165.2,blat.proc3829901.chain_2279,blat.proc3829901.chain_2280	4
scaffold_4	alt_donor	18065490	18065491	-	asmbl_42094	none	STRG.5400.2,blat.proc3829889.chain_1478	2	STRG.5400.1,blat.proc3829889.chain_1477	2
scaffold_19	alt_acceptor	13134663	13134664	-	asmbl_21820	none	STRG.22621.1	1	blat.proc3829897.chain_3401	1
scaffold_10	retained_intron	11908965	11909113	+	asmbl_4777,asmbl_4778,asmbl_4779	none	STRG.12815.2,Trinity_GG_7071_c0_g1_i2,Trinity_GG_7071_c0_g1_i3,blat.proc3829877.chain_1400,blat.proc3829877.chain_1401,blat.proc3829877.chain_1404	6	STRG.12815.1,Trinity_GG_7071_c0_g1_i5,blat.proc3829877.chain_1402,blat.proc3829877.chain_1403	4
scaffold_1	retained_intron	11068679	11068764	+	asmbl_2043	none	STRG.723.1,Trinity_GG_431_c0_g1_i3,blat.proc3829871.chain_745	3	STRG.723.2	1
scaffold_11	alt_acceptor	9832320	9832321	+	asmbl_5869	none	Trinity_GG_7729_c0_g1_i7,blat.proc3829877.chain_2507	2	STRG.13996.1,STRG.13996.2,STRG.13996.3,STRG.13996.4,Trinity_GG_7729_c0_g1_i2,blat.proc3829877.chain_2505,blat.proc3829877.chain_2510,blat.proc3829877.chain_2512,blat.proc3829877.chain_2514	9
scaffold_3	alt_acceptor	935722	935723	-	asmbl_38640	none	STRG.2915.1,blat.proc3829887.chain_2737	2	blat.proc3829887.chain_2736	1
scaffold_5	retained_intron	10804890	10804988	+	asmbl_44364	none	blat.proc3829873.chain_2489	1	STRG.6347.1,STRG.6347.2,blat.proc3829873.chain_2486,blat.proc3829873.chain_2487,blat.proc3829873.chain_2490	5
scaffold_1	spliced_intron	1993732	1994147	+	asmbl_1520,asmbl_1521,asmbl_1522,asmbl_1524	none	STRG.126.1,STRG.126.2,Trinity_GG_103_c0_g1_i2,blat.proc3829871.chain_176,blat.proc3829871.chain_177,blat.proc3829871.chain_178	6	Trinity_GG_103_c1_g1_i1,blat.proc3829871.chain_179	2
scaffold_22	alternate_exon	11155459	11155573	-	asmbl_30419	none	STRG.25428.1,Trinity_GG_31213_c0_g1_i1,blat.proc3829899.chain_2485	3	STRG.25428.2	1
scaffold_4	alt_donor	7087758	7087759	+	asmbl_42797	none	STRG.4545.4	1	STRG.4545.1,STRG.4545.2,STRG.4545.3,blat.proc3829873.chain_943,blat.proc3829873.chain_945	5
scaffold_24	skipped_exon	9592399	9593170	-	asmbl_33129	none	STRG.26924.2	1	STRG.26924.1,STRG.26924.3,blat.proc3829901.chain_225	3
scaffold_2	starts_in_intron	879912	879912	+	asmbl_24140	none	blat.proc3829871.chain_1625	1	STRG.1562.1,blat.proc3829871.chain_1626	2
scaffold_2	retained_intron	14221018	14221150	-	asmbl_23595,asmbl_23598	none	STRG.2413.1,blat.proc3829887.chain_2199,blat.proc3829887.chain_2202	3	blat.proc3829887.chain_2201,blat.proc3829887.chain_2203	2
scaffold_10	starts_in_intron	395367	395367	+	asmbl_4139	none	Trinity_GG_6634_c0_g1_i3,blat.proc3829877.chain_630	2	STRG.11918.1,STRG.11918.2,STRG.11918.3,Trinity_GG_6634_c0_g1_i1,Trinity_GG_6634_c0_g1_i2,blat.proc3829877.chain_628,blat.proc3829877.chain_629	7
scaffold_14	retained_intron	8610516	8610600	-	asmbl_13309	none	Trinity_GG_26710_c0_g1_i2,blat.proc3829895.chain_1991	2	STRG.17280.1,STRG.17280.2,blat.proc3829895.chain_1989,blat.proc3829895.chain_1992	4
scaffold_5	alt_donor	10170961	10170962	+	asmbl_44333	none	blat.proc3829873.chain_2378	1	STRG.6310.1,blat.proc3829873.chain_2380	2
scaffold_8	alternate_exon	8172899	8173019	+	asmbl_51990	none	STRG.10093.3	1	STRG.10093.1,STRG.10093.2	2
scaffold_12	retained_intron	12348871	12349011	+	asmbl_8962	none	blat.proc3829877.chain_3600	1	STRG.15126.1,Trinity_GG_8344_c0_g1_i1,blat.proc3829877.chain_3601	3
scaffold_6	retained_intron	14511822	14511873	+	asmbl_47558	none	Trinity_GG_4518_c0_g1_i2,blat.proc3829875.chain_628	2	STRG.8206.1	1
scaffold_5	alternate_exon	5047833	5048351	+	asmbl_43991	none	STRG.5951.1,blat.proc3829873.chain_2107	2	blat.proc3829873.chain_2109	1
scaffold_1	alternate_exon	19043527	19044100	+	asmbl_2569	none	STRG.1337.4	1	STRG.1337.2,STRG.1337.3,blat.proc3829871.chain_1392,blat.proc3829871.chain_1393	4
scaffold_23	spliced_intron	1399387	1399546	-	asmbl_31357	none	STRG.25592.1,blat.proc3829899.chain_2679	2	Trinity_GG_31310_c0_g1_i2,blat.proc3829899.chain_2680	2
scaffold_2	ends_in_intron	7780613	7780613	+	asmbl_24615	none	Trinity_GG_1189_c0_g1_i6	1	STRG.2076.1,STRG.2076.2,STRG.2076.3,STRG.2076.4,STRG.2076.5,STRG.2076.6,blat.proc3829871.chain_2203,blat.proc3829871.chain_2205,blat.proc3829871.chain_2207,blat.proc3829871.chain_2208,blat.proc3829871.chain_2209,blat.proc3829871.chain_2211,blat.proc3829871.chain_2213	13
scaffold_4	retained_intron	4414847	4415344	+	asmbl_42575,asmbl_42584,asmbl_42587,asmbl_42588	none	Trinity_GG_2404_c0_g1_i10,blat.proc3829873.chain_680,blat.proc3829873.chain_686,blat.proc3829873.chain_690,blat.proc3829873.chain_698	5	Trinity_GG_2404_c0_g1_i14,blat.proc3829873.chain_692	2
scaffold_3	retained_intron	13327306	13327386	-	asmbl_39199	none	Trinity_GG_19030_c0_g1_i3,blat.proc3829887.chain_3454	2	STRG.3677.1,STRG.3677.2,Trinity_GG_19030_c0_g1_i2,blat.proc3829887.chain_3455	4
scaffold_4	ends_in_intron	1644578	1644578	+	asmbl_42449	none	STRG.4200.1,Trinity_GG_2331_c0_g1_i2,blat.proc3829873.chain_538	3	STRG.4200.2,Trinity_GG_2331_c0_g1_i1,blat.proc3829873.chain_537	3
scaffold_4	spliced_intron	5648812	5648909	-	asmbl_41369	none	STRG.4469.4	1	STRG.4469.1,Trinity_GG_19533_c1_g1_i2,blat.proc3829889.chain_615,blat.proc3829889.chain_617,blat.proc3829889.chain_618	5
scaffold_2	alt_acceptor	7042365	7042366	+	asmbl_24554,asmbl_24555	none	STRG.2043.1,Trinity_GG_1152_c0_g1_i1,blat.proc3829871.chain_2113	3	Trinity_GG_1152_c0_g1_i2,Trinity_GG_1152_c0_g1_i3,Trinity_GG_1152_c0_g1_i5,blat.proc3829871.chain_2110,blat.proc3829871.chain_2111,blat.proc3829871.chain_2112	6
scaffold_1	alternate_exon	11069506	11069541	+	asmbl_2044	none	STRG.723.3,Trinity_GG_431_c0_g1_i1,blat.proc3829871.chain_744	3	STRG.723.1,STRG.723.2,Trinity_GG_431_c0_g1_i3,blat.proc3829871.chain_745	4
scaffold_2	alternate_exon	14232095	14233427	-	asmbl_23604	none	STRG.2418.1	1	STRG.2418.2	1
scaffold_8	alt_acceptor	18161534	18161535	-	asmbl_53521,asmbl_53522,asmbl_53523,asmbl_53526	none	STRG.10720.1,Trinity_GG_22981_c0_g1_i1,Trinity_GG_22981_c0_g1_i2,Trinity_GG_22981_c0_g1_i9,blat.proc3829891.chain_2907,blat.proc3829891.chain_2908,blat.proc3829891.chain_2911,blat.proc3829891.chain_2912,blat.proc3829891.chain_2913	9	Trinity_GG_22981_c0_g1_i6,Trinity_GG_22981_c0_g1_i8,blat.proc3829891.chain_2909,blat.proc3829891.chain_2910	4
scaffold_25	retained_intron	9503273	9503414	-	asmbl_34475	none	Trinity_GG_32541_c0_g1_i3,blat.proc3829901.chain_1006	2	STRG.27747.1,blat.proc3829901.chain_1008,blat.proc3829901.chain_1009	3
scaffold_17	alternate_exon	12395637	12395679	-	asmbl_19382	none	STRG.20756.2	1	STRG.20756.1	1
scaffold_11	alt_donor	6714867	6714868	-	asmbl_6714,asmbl_6717,asmbl_6718	none	STRG.13703.5,STRG.13703.6,blat.proc3829893.chain_2180	3	STRG.13703.1,STRG.13703.2,STRG.13703.4,Trinity_GG_24701_c0_g1_i5,blat.proc3829893.chain_2181,blat.proc3829893.chain_2182	6
scaffold_20	spliced_intron	1489870	1489939	+	asmbl_25571,asmbl_25572,asmbl_25573	none	STRG.22855.2,STRG.22855.3,STRG.22855.5	3	STRG.22855.1	1
scaffold_8	starts_in_intron	3513931	3513931	-	asmbl_52729	none	Trinity_GG_22504_c0_g1_i1	1	STRG.9838.2	1
scaffold_15	retained_intron	15409801	15410182	+	asmbl_14720	none	blat.proc3829879.chain_3516	1	STRG.18921.7,blat.proc3829879.chain_3514	2
scaffold_7	alt_donor	5211432	5211433	+	asmbl_50676	none	STRG.8849.2,Trinity_GG_4846_c0_g1_i2,blat.proc3829875.chain_1220	3	STRG.8849.1,Trinity_GG_4846_c0_g1_i1,blat.proc3829875.chain_1219	3
scaffold_23	alt_acceptor	9953653	9953654	-	asmbl_31829,asmbl_31831,asmbl_31832	none	STRG.26184.1,STRG.26184.2,blat.proc3829899.chain_3241,blat.proc3829899.chain_3243	4	STRG.26184.3	1
scaffold_15	ends_in_intron	15176008	15176008	+	asmbl_14687	none	blat.proc3829879.chain_3483	1	STRG.18906.1,STRG.18906.2,STRG.18906.3,STRG.18906.4,blat.proc3829879.chain_3471,blat.proc3829879.chain_3472,blat.proc3829879.chain_3473,blat.proc3829879.chain_3474,blat.proc3829879.chain_3475,blat.proc3829879.chain_3476,blat.proc3829879.chain_3477,blat.proc3829879.chain_3478,blat.proc3829879.chain_3479,blat.proc3829879.chain_3480,blat.proc3829879.chain_3484,blat.proc3829879.chain_3485,blat.proc3829879.chain_3486,blat.proc3829879.chain_3487	18
scaffold_4	alt_acceptor	19591656	19591657	-	asmbl_42209	none	blat.proc3829889.chain_1636	1	blat.proc3829889.chain_1637	1
scaffold_6	starts_in_intron	17882432	17882432	-	asmbl_49148	none	Trinity_GG_21830_c0_g1_i4,blat.proc3829891.chain_766	2	STRG.8474.1,STRG.8474.3,STRG.8474.4,Trinity_GG_21830_c0_g1_i2,Trinity_GG_21830_c0_g1_i3,blat.proc3829891.chain_764,blat.proc3829891.chain_767	7
scaffold_7	alternate_exon	2474457	2474580	+	asmbl_50525	none	STRG.8671.1	1	STRG.8671.2,blat.proc3829875.chain_1067	2
scaffold_14	alt_donor	1592536	1592537	-	asmbl_12873	none	STRG.16786.1,blat.proc3829895.chain_1442	2	STRG.16786.2,STRG.16786.3,STRG.16786.4,STRG.16786.5,blat.proc3829895.chain_1443,blat.proc3829895.chain_1444	6
scaffold_27	ends_in_intron	6268557	6268557	-	asmbl_37008	none	Trinity_GG_4018_c0_g1_i1	1	STRG.28997.1,STRG.28997.2,blat.proc3829901.chain_2157	3
scaffold_2	alternate_exon	13446017	13446506	-	asmbl_23534	none	blat.proc3829887.chain_2213	1	blat.proc3829887.chain_2217	1
scaffold_6	retained_intron	18691242	18691696	+	asmbl_47785	none	Trinity_GG_4699_c0_g1_i1,blat.proc3829875.chain_961	2	STRG.8528.1,STRG.8528.2,Trinity_GG_4699_c0_g1_i2,Trinity_GG_4699_c0_g1_i3,blat.proc3829875.chain_959,blat.proc3829875.chain_960	6
scaffold_14	skipped_exon	1069987	1070949	+	asmbl_11766	none	STRG.16754.5	1	STRG.16754.1,STRG.16754.2,STRG.16754.4,blat.proc3829879.chain_1436,blat.proc3829879.chain_1441	5
scaffold_15	spliced_intron	15502183	15502253	+	asmbl_14751,asmbl_14754,asmbl_14755	none	STRG.18940.1,Trinity_GG_10382_c0_g1_i1,Trinity_GG_10382_c0_g1_i2,Trinity_GG_10382_c0_g1_i5,blat.proc3829879.chain_3533,blat.proc3829879.chain_3534,blat.proc3829879.chain_3535	7	STRG.18940.2,Trinity_GG_10382_c0_g1_i3,Trinity_GG_10382_c0_g1_i6,blat.proc3829879.chain_3532,blat.proc3829879.chain_3536,blat.proc3829879.chain_3537	6
scaffold_8	retained_exon	17313204	17313263	-	asmbl_53453	none	STRG.10645.5,blat.proc3829891.chain_2805	2	STRG.10645.2,blat.proc3829891.chain_2806	2
scaffold_2	alt_donor	3708060	3708061	+	asmbl_24325	none	STRG.1802.3	1	STRG.1802.1	1
scaffold_15	starts_in_intron	12599940	12599940	-	asmbl_15604	none	blat.proc3829895.chain_3481	1	STRG.18702.1,Trinity_GG_27520_c0_g1_i3,blat.proc3829895.chain_3477,blat.proc3829895.chain_3478	4
scaffold_5	starts_in_intron	5627734	5627734	-	asmbl_45441	none	STRG.5980.2	1	STRG.5980.1	1
scaffold_16	alt_acceptor	314197	314198	-	asmbl_16020,asmbl_16023	none	STRG.19011.1,STRG.19011.3	2	STRG.19011.2,STRG.19011.4	2
scaffold_11	spliced_intron	224369	224543	-	asmbl_6360	none	STRG.13249.2	1	STRG.13249.1	1
scaffold_27	starts_in_intron	623468	623468	+	asmbl_35922	none	Trinity_GG_15814_c1_g1_i1,blat.proc3829885.chain_1613	2	STRG.28561.1,STRG.28561.2,blat.proc3829885.chain_1611	3
scaffold_16	retained_intron	14556348	14556439	-	asmbl_16645	none	STRG.19824.2	1	STRG.19824.1	1
scaffold_15	ends_in_intron	9725571	9725571	+	asmbl_14348	none	blat.proc3829879.chain_3078	1	STRG.18476.1,blat.proc3829879.chain_3079,blat.proc3829879.chain_3080	3
scaffold_13	alt_acceptor	4016213	4016214	+	asmbl_10734	none	blat.proc3829879.chain_410	1	blat.proc3829879.chain_409	1
scaffold_4	alt_acceptor	1972705	1972706	-	asmbl_41125	none	blat.proc3829889.chain_315	1	blat.proc3829889.chain_316	1
scaffold_10	retained_exon	1493413	1493587	-	asmbl_2977	none	STRG.12017.3,blat.proc3829893.chain_389	2	STRG.12017.1,STRG.12017.2,blat.proc3829893.chain_390,blat.proc3829893.chain_392,blat.proc3829893.chain_394	5
scaffold_13	alt_acceptor	5818787	5818788	+	asmbl_10880,asmbl_10882	none	STRG.15880.1,STRG.15880.4	2	STRG.15880.3	1
scaffold_14	alt_acceptor	1613601	1613602	+	asmbl_11803,asmbl_11806	none	STRG.16791.3,STRG.16791.4,Trinity_GG_9256_c0_g1_i3,Trinity_GG_9256_c0_g1_i4,blat.proc3829879.chain_1535,blat.proc3829879.chain_1536	6	STRG.16791.1,STRG.16791.2,Trinity_GG_9256_c0_g1_i5,blat.proc3829879.chain_1537,blat.proc3829879.chain_1539	5
scaffold_17	retained_intron	10037074	10037504	-	asmbl_19271	none	STRG.20608.4,Trinity_GG_28623_c0_g1_i3,blat.proc3829897.chain_1589	3	STRG.20608.3	1
scaffold_24	starts_in_intron	3330501	3330501	-	asmbl_32805	none	blat.proc3829899.chain_3537	1	STRG.26511.1,blat.proc3829899.chain_3538	2
scaffold_26	alt_acceptor	9330586	9330587	-	asmbl_35048	none	STRG.28471.2	1	STRG.28471.1,blat.proc3829901.chain_1606	2
scaffold_16	alt_acceptor	9147212	9147213	+	asmbl_17268	none	STRG.19509.1	1	STRG.19509.2	1
scaffold_13	alt_donor	2653422	2653423	-	asmbl_9429	none	STRG.15566.2	1	STRG.15566.1,blat.proc3829895.chain_303,blat.proc3829895.chain_305	3
scaffold_25	alternate_exon	2145556	2145700	+	asmbl_33385	none	STRG.27192.2	1	STRG.27192.1,blat.proc3829885.chain_245	2
scaffold_8	spliced_intron	6309352	6309452	+	asmbl_51945,asmbl_51946	none	STRG.10028.1,Trinity_GG_5540_c0_g2_i1,blat.proc3829875.chain_2461,blat.proc3829875.chain_2465	4	blat.proc3829875.chain_2464	1
scaffold_6	ends_in_intron	9910461	9910461	+	asmbl_47187	none	STRG.7827.3,blat.proc3829875.chain_131	2	STRG.7827.1,STRG.7827.2	2
scaffold_21	alternate_exon	2484569	2484617	-	asmbl_27491	none	STRG.23859.3	1	STRG.23859.2	1
scaffold_27	retained_exon	4945078	4945234	+	asmbl_36285,asmbl_36287	none	STRG.28914.5,STRG.28914.6,blat.proc3829885.chain_2067	3	STRG.28914.4,STRG.28914.7	2
scaffold_2	retained_intron	8055440	8055709	-	asmbl_23325	none	STRG.2095.5,blat.proc3829887.chain_2007	2	STRG.2095.4,blat.proc3829887.chain_2006	2
scaffold_11	alt_acceptor	4666762	4666763	+	asmbl_5458,asmbl_5459,asmbl_5460	none	STRG.13546.2,blat.proc3829877.chain_1979,blat.proc3829877.chain_1981,blat.proc3829877.chain_1982	4	STRG.13546.4	1
scaffold_5	retained_intron	17301487	17301540	+	asmbl_44819,asmbl_44820	none	STRG.6893.1,STRG.6893.2,Trinity_GG_3797_c1_g1_i1,blat.proc3829873.chain_3050	4	STRG.6893.3	1
scaffold_8	starts_in_intron	6902052	6902052	+	asmbl_51960	none	blat.proc3829875.chain_2541	1	STRG.10042.1,STRG.10042.2,STRG.10042.3,blat.proc3829875.chain_2536,blat.proc3829875.chain_2537,blat.proc3829875.chain_2539,blat.proc3829875.chain_2542	7
scaffold_28	spliced_intron	5011999	5012133	+	asmbl_38250,asmbl_38255,asmbl_38256	none	STRG.29628.1,blat.proc3829885.chain_2751,blat.proc3829885.chain_2752	3	Trinity_GG_16433_c0_g1_i1,blat.proc3829885.chain_2753	2
scaffold_17	starts_in_intron	8250459	8250459	+	asmbl_18090	none	Trinity_GG_11182_c0_g1_i2,blat.proc3829881.chain_1190	2	blat.proc3829881.chain_1189	1
scaffold_8	alternate_exon	8187711	8187882	-	asmbl_52938	none	STRG.10094.4,blat.proc3829891.chain_2275	2	STRG.10094.2,STRG.10094.3,blat.proc3829891.chain_2274	3
scaffold_3	retained_intron	6658616	6658787	+	asmbl_40060,asmbl_40061,asmbl_40062,asmbl_40064,asmbl_40065,asmbl_40070	none	STRG.3290.1,STRG.3290.3,STRG.3290.4,blat.proc3829871.chain_3459,blat.proc3829871.chain_3460,blat.proc3829871.chain_3461,blat.proc3829871.chain_3464	7	STRG.3290.2,STRG.3290.5,blat.proc3829871.chain_3468,blat.proc3829871.chain_3469	4
scaffold_25	alt_donor	6067975	6067976	-	asmbl_34294	none	blat.proc3829901.chain_721	1	STRG.27475.1,blat.proc3829901.chain_717,blat.proc3829901.chain_722	3
scaffold_22	alt_donor	316279	316280	+	asmbl_29132,asmbl_29137,asmbl_29138,asmbl_29139	none	STRG.24670.1,blat.proc3829883.chain_1729,blat.proc3829883.chain_1730,blat.proc3829883.chain_1731,blat.proc3829883.chain_1732	5	STRG.24670.2,STRG.24670.3,blat.proc3829883.chain_1728	3
scaffold_17	retained_exon	8542325	8542348	+	asmbl_18120,asmbl_18122	none	STRG.20458.1,STRG.20458.3,blat.proc3829881.chain_1287	3	STRG.20458.2,blat.proc3829881.chain_1288	2
scaffold_17	ends_in_intron	5129590	5129590	-	asmbl_18958	none	blat.proc3829897.chain_1201	1	STRG.20228.1,blat.proc3829897.chain_1198,blat.proc3829897.chain_1199,blat.proc3829897.chain_1202	4
scaffold_300	retained_intron	1280	1588	+	asmbl_40850	none	STRG.30247.3,blat.proc3829885.chain_3279	2	STRG.30247.2	1
scaffold_24	retained_intron	6223797	6223880	-	asmbl_32928,asmbl_32929,asmbl_32932,asmbl_32938	none	Trinity_GG_31899_c0_g1_i10,blat.proc3829899.chain_3689,blat.proc3829899.chain_3696	3	STRG.26664.1,blat.proc3829899.chain_3686,blat.proc3829899.chain_3690,blat.proc3829899.chain_3693,blat.proc3829899.chain_3694	5
scaffold_3	spliced_intron	10275118	10275967	+	asmbl_40206,asmbl_40209,asmbl_40210,asmbl_40212	none	STRG.3461.1,STRG.3461.3,STRG.3461.4,blat.proc3829871.chain_3621,blat.proc3829871.chain_3622,blat.proc3829871.chain_3624	6	blat.proc3829871.chain_3623	1
scaffold_28	alternate_exon	9451170	9457418	+	asmbl_38479	none	STRG.29957.1,Trinity_GG_16538_c1_g1_i1,blat.proc3829885.chain_2956	3	STRG.29957.2	1
scaffold_6	alt_donor	17883961	17883962	-	asmbl_49145	none	STRG.8474.1,Trinity_GG_21830_c0_g1_i2,blat.proc3829891.chain_767	3	STRG.8474.3,STRG.8474.4	2
scaffold_14	starts_in_intron	9645417	9645417	-	asmbl_13372	none	blat.proc3829895.chain_2026	1	STRG.17338.1,blat.proc3829895.chain_2025,blat.proc3829895.chain_2027	3
scaffold_18	retained_intron	7686295	7686459	+	asmbl_20801,asmbl_20802	none	STRG.21464.4,Trinity_GG_11863_c0_g1_i9,blat.proc3829881.chain_2433,blat.proc3829881.chain_2434,blat.proc3829881.chain_2435	5	STRG.21464.1,STRG.21464.2,STRG.21464.3,Trinity_GG_11863_c0_g1_i8,blat.proc3829881.chain_2436,blat.proc3829881.chain_2437,blat.proc3829881.chain_2439,blat.proc3829881.chain_2440	8
scaffold_5	spliced_intron	4866969	4867162	+	asmbl_43973,asmbl_43975,asmbl_43976	none	STRG.5938.1,STRG.5938.3,blat.proc3829873.chain_2134,blat.proc3829873.chain_2136,blat.proc3829873.chain_2137	5	Trinity_GG_3273_c0_g1_i2,blat.proc3829873.chain_2135	2
scaffold_11	alt_donor	8044054	8044055	-	asmbl_6798	none	STRG.13798.2	1	STRG.13798.1,blat.proc3829893.chain_2265	2
scaffold_14	spliced_intron	11792025	11792322	-	asmbl_13521	none	STRG.17514.2,blat.proc3829895.chain_2231	2	STRG.17514.1,Trinity_GG_26836_c1_g1_i1,blat.proc3829895.chain_2232	3
scaffold_10	alternate_exon	3318220	3318463	-	asmbl_3100	none	STRG.12155.1,Trinity_GG_23799_c2_g1_i1,blat.proc3829893.chain_624	3	STRG.12155.2	1
scaffold_16	starts_in_intron	10105472	10105472	+	asmbl_17322	none	blat.proc3829881.chain_480	1	STRG.19581.1,STRG.19581.2,blat.proc3829881.chain_479,blat.proc3829881.chain_481	4
scaffold_3	retained_intron	19885475	19886465	-	asmbl_39614	none	STRG.4100.2,Trinity_GG_19264_c1_g1_i2,Trinity_GG_19264_c1_g1_i4,Trinity_GG_19264_c2_g1_i1,blat.proc3829889.chain_142,blat.proc3829889.chain_143,blat.proc3829889.chain_145	7	blat.proc3829889.chain_144	1
scaffold_340	retained_intron	3284	3408	+	asmbl_40965,asmbl_40966	none	STRG.30267.3,STRG.30267.4,Trinity_GG_24051_c1_g1_i1,blat.proc3829893.chain_1095	4	STRG.30267.1,STRG.30267.2	2
scaffold_21	alternate_exon	2601227	2602586	+	asmbl_28430	none	STRG.23878.1,blat.proc3829883.chain_1033	2	blat.proc3829883.chain_1034	1
scaffold_3	alternate_exon	6659145	6659746	+	asmbl_40071	none	Trinity_GG_1861_c0_g1_i10,blat.proc3829871.chain_3471	2	blat.proc3829871.chain_3457	1
scaffold_10	retained_intron	11907708	11908477	+	asmbl_4777,asmbl_4779,asmbl_4780	none	STRG.12815.2,Trinity_GG_7071_c0_g1_i3,blat.proc3829877.chain_1400,blat.proc3829877.chain_1402	4	STRG.12815.1,Trinity_GG_7071_c0_g1_i2,Trinity_GG_7071_c0_g1_i5,blat.proc3829877.chain_1403,blat.proc3829877.chain_1404	5
scaffold_25	alt_donor	2089251	2089252	-	asmbl_34045	none	STRG.27196.2	1	blat.proc3829901.chain_540	1
scaffold_19	spliced_intron	8755862	8756122	+	asmbl_22352	none	STRG.22316.1,blat.proc3829881.chain_3261	2	blat.proc3829881.chain_3260	1
scaffold_10	alt_acceptor	1425719	1425720	+	asmbl_4215,asmbl_4220	none	STRG.12005.3,Trinity_GG_6688_c0_g1_i4,blat.proc3829877.chain_728	3	STRG.12005.1,STRG.12005.4,STRG.12005.5,Trinity_GG_6688_c0_g1_i6,blat.proc3829877.chain_729,blat.proc3829877.chain_731	6
scaffold_2	starts_in_intron	4580120	4580120	+	asmbl_24377	none	Trinity_GG_1044_c1_g2_i1,blat.proc3829871.chain_1918	2	STRG.1884.1,STRG.1884.2,STRG.1884.3,blat.proc3829871.chain_1916,blat.proc3829871.chain_1917	5
scaffold_1	retained_intron	4587875	4587986	+	asmbl_1673	none	Trinity_GG_188_c0_g1_i2,blat.proc3829871.chain_325	2	STRG.280.1,blat.proc3829871.chain_323,blat.proc3829871.chain_324	3
scaffold_4	spliced_intron	4692423	4692526	+	asmbl_42627,asmbl_42630,asmbl_42633	none	STRG.4376.1,blat.proc3829873.chain_714,blat.proc3829873.chain_716,blat.proc3829873.chain_717	4	blat.proc3829873.chain_718	1
scaffold_10	alt_donor	5156743	5156744	+	asmbl_4421	none	STRG.12329.1,blat.proc3829877.chain_975	2	blat.proc3829877.chain_974	1
scaffold_3	alt_acceptor	4904494	4904495	+	asmbl_40001	none	STRG.3180.1,blat.proc3829871.chain_3389	2	STRG.3180.2,blat.proc3829871.chain_3388	2
scaffold_16	retained_intron	6216174	6216261	-	asmbl_16329	none	blat.proc3829897.chain_370	1	STRG.19377.1,blat.proc3829897.chain_369	2
scaffold_15	alt_donor	15409791	15409792	+	asmbl_14721,asmbl_14723,asmbl_14725	none	STRG.18921.1,STRG.18921.10,STRG.18921.9	3	STRG.18921.2,STRG.18921.3,STRG.18921.4,STRG.18921.5,STRG.18921.6,STRG.18921.7,STRG.18921.8,blat.proc3829879.chain_3514,blat.proc3829879.chain_3515,blat.proc3829879.chain_3517,blat.proc3829879.chain_3518	11
scaffold_19	retained_intron	12972587	12972817	-	asmbl_21784,asmbl_21786	none	STRG.22606.3,STRG.22606.5,Trinity_GG_29578_c0_g1_i5,blat.proc3829897.chain_3321	4	STRG.22606.2,Trinity_GG_29578_c0_g1_i1,Trinity_GG_29578_c0_g1_i6,Trinity_GG_29578_c0_g1_i7,blat.proc3829897.chain_3318,blat.proc3829897.chain_3322,blat.proc3829897.chain_3325	7
scaffold_13	spliced_intron	11581870	11581964	+	asmbl_11264,asmbl_11265,asmbl_11266,asmbl_11268	none	STRG.16293.1,STRG.16293.2,STRG.16293.3,blat.proc3829879.chain_1061,blat.proc3829879.chain_1064,blat.proc3829879.chain_1065	6	blat.proc3829879.chain_1062	1
scaffold_20	alternate_exon	8291070	8291153	+	asmbl_25916,asmbl_25918	none	STRG.23362.4,Trinity_GG_12893_c0_g1_i2,blat.proc3829883.chain_458	3	STRG.23362.1,STRG.23362.2,STRG.23362.3,Trinity_GG_12893_c0_g1_i3,blat.proc3829883.chain_461	5
scaffold_20	alt_acceptor	4262299	4262300	-	asmbl_26650	none	STRG.23096.1	1	STRG.23096.3	1
scaffold_20	alt_acceptor	11099024	11099025	+	asmbl_26168	none	blat.proc3829883.chain_758	1	STRG.23614.1,blat.proc3829883.chain_757	2
scaffold_6	spliced_intron	5753701	5753903	+	asmbl_46916,asmbl_46917	none	STRG.7525.2,blat.proc3829873.chain_3644,blat.proc3829873.chain_3647	3	STRG.7525.1,Trinity_GG_4120_c0_g1_i1,blat.proc3829873.chain_3645,blat.proc3829873.chain_3646	4
scaffold_26	retained_intron	2264373	2264869	+	asmbl_35272	none	STRG.27941.1,blat.proc3829885.chain_920	2	STRG.27941.2,blat.proc3829885.chain_921	2
scaffold_15	alternate_exon	8986186	8986483	+	asmbl_14320	none	blat.proc3829879.chain_3028	1	STRG.18435.2,blat.proc3829879.chain_3025	2
scaffold_13	ends_in_intron	13818739	13818739	+	asmbl_11391	none	STRG.16423.1,blat.proc3829879.chain_1126,blat.proc3829879.chain_1127	3	STRG.16423.2	1
scaffold_24	skipped_exon	4375751	4376931	+	asmbl_32212	none	STRG.26580.2	1	STRG.26580.1,Trinity_GG_14699_c1_g1_i1,blat.proc3829883.chain_3479	3
scaffold_7	spliced_intron	12387853	12388141	-	asmbl_50013,asmbl_50015,asmbl_50016,asmbl_50018,asmbl_50019	none	STRG.9328.1,blat.proc3829891.chain_1531,blat.proc3829891.chain_1532,blat.proc3829891.chain_1533,blat.proc3829891.chain_1535,blat.proc3829891.chain_1536	6	blat.proc3829891.chain_1534,blat.proc3829891.chain_1537	2
scaffold_15	alt_acceptor	13847926	13847927	-	asmbl_15698	none	STRG.18804.1	1	STRG.18804.2	1
scaffold_7	alt_acceptor	16131737	16131738	-	asmbl_50218	none	STRG.9563.1,Trinity_GG_22388_c0_g1_i2,blat.proc3829891.chain_1801	3	STRG.9563.2,Trinity_GG_22388_c0_g1_i1,blat.proc3829891.chain_1802	3
scaffold_21	retained_intron	2470395	2470715	-	asmbl_27481,asmbl_27484,asmbl_27488	none	STRG.23863.1,blat.proc3829899.chain_899,blat.proc3829899.chain_902,blat.proc3829899.chain_904,blat.proc3829899.chain_905	5	STRG.23863.2,STRG.23863.4,blat.proc3829899.chain_898,blat.proc3829899.chain_901,blat.proc3829899.chain_906	5
scaffold_14	alternate_exon	8007817	8007987	+	asmbl_12170	none	STRG.17203.3	1	STRG.17203.1,blat.proc3829879.chain_1949,blat.proc3829879.chain_1952	3
scaffold_11	retained_intron	5258781	5258830	+	asmbl_5520	none	STRG.13602.2	1	STRG.13602.5	1
scaffold_13	skipped_exon	16150170	16152408	-	asmbl_10238	none	STRG.16644.4	1	STRG.16644.2	1
scaffold_18	ends_in_intron	13056307	13056307	-	asmbl_20192	none	blat.proc3829897.chain_2540	1	STRG.21738.1,blat.proc3829897.chain_2541	2
scaffold_16	retained_intron	10441689	10441848	+	asmbl_17332	none	Trinity_GG_10746_c0_g1_i2,blat.proc3829881.chain_487	2	STRG.19601.3	1
scaffold_8	alt_acceptor	11829370	11829371	+	asmbl_52261,asmbl_52263	none	STRG.10379.2,blat.proc3829875.chain_2918	2	STRG.10379.1	1
scaffold_27	alt_donor	6258930	6258931	+	asmbl_36349,asmbl_36352,asmbl_36353	none	STRG.28995.2,STRG.28995.3,blat.proc3829885.chain_2096,blat.proc3829885.chain_2097	4	blat.proc3829885.chain_2095	1
scaffold_20	starts_in_intron	252207	252207	-	asmbl_26413	none	Trinity_GG_29682_c0_g1_i3	1	STRG.22706.1,STRG.22706.2	2
scaffold_11	alternate_exon	7048375	7049235	+	asmbl_5616	none	Trinity_GG_7553_c0_g1_i1,blat.proc3829877.chain_2197	2	STRG.13722.2	1
scaffold_5	alt_donor	5972142	5972143	+	asmbl_44046	none	blat.proc3829873.chain_2174	1	STRG.6001.2	1
scaffold_14	ends_in_intron	11387824	11387824	-	asmbl_13465	none	STRG.17457.4	1	STRG.17457.1,STRG.17457.2,STRG.17457.3,blat.proc3829895.chain_2094,blat.proc3829895.chain_2095,blat.proc3829895.chain_2096,blat.proc3829895.chain_2098	7
scaffold_20	starts_in_intron	8154503	8154503	-	asmbl_26889,asmbl_26892	none	STRG.23349.2,STRG.23349.3	2	blat.proc3829899.chain_409	1
scaffold_11	starts_in_intron	9833418	9833418	+	asmbl_5870	none	Trinity_GG_7729_c0_g1_i3,blat.proc3829877.chain_2509	2	STRG.13996.1,STRG.13996.2,STRG.13996.4,blat.proc3829877.chain_2505,blat.proc3829877.chain_2508,blat.proc3829877.chain_2512,blat.proc3829877.chain_2514	7
scaffold_13	alt_acceptor	5551861	5551862	+	asmbl_10853,asmbl_10854	none	STRG.15842.1,blat.proc3829879.chain_471,blat.proc3829879.chain_473	3	blat.proc3829879.chain_472	1
scaffold_22	alternate_exon	2393813	2393884	+	asmbl_29236	none	blat.proc3829883.chain_1747	1	STRG.24765.1,blat.proc3829883.chain_1745,blat.proc3829883.chain_1746	3
scaffold_13	starts_in_intron	3085844	3085844	+	asmbl_10644	none	STRG.15600.4,blat.proc3829879.chain_323	2	STRG.15600.1,STRG.15600.2,blat.proc3829879.chain_324,blat.proc3829879.chain_325	4
scaffold_4	retained_intron	19604777	19604824	-	asmbl_42221	none	STRG.5547.1	1	STRG.5547.2	1
scaffold_4	starts_in_intron	5106772	5106772	-	asmbl_41293	none	blat.proc3829889.chain_512	1	STRG.4404.1,STRG.4404.2,blat.proc3829889.chain_513	3
scaffold_10	spliced_intron	2787464	2787760	-	asmbl_3046	none	STRG.12096.1,Trinity_GG_23730_c0_g1_i4,Trinity_GG_23730_c0_g1_i5,blat.proc3829893.chain_515,blat.proc3829893.chain_519	5	STRG.12096.2,Trinity_GG_23730_c0_g1_i2,blat.proc3829893.chain_516,blat.proc3829893.chain_517,blat.proc3829893.chain_518	5
scaffold_11	starts_in_intron	1285509	1285509	-	asmbl_6393,asmbl_6396	none	STRG.13311.2,blat.proc3829893.chain_1747,blat.proc3829893.chain_1748	3	STRG.13311.1,blat.proc3829893.chain_1749,blat.proc3829893.chain_1751	3
scaffold_1	spliced_intron	39649	39790	-	asmbl_1,asmbl_2,asmbl_3,asmbl_7	none	STRG.19.1,STRG.19.2,STRG.19.3,blat.proc3829885.chain_3731,blat.proc3829885.chain_3732	5	blat.proc3829885.chain_3729	1
scaffold_14	spliced_intron	2301569	2301796	+	asmbl_11827	none	STRG.16832.4	1	STRG.16832.2,Trinity_GG_9224_c7_g1_i1,blat.proc3829879.chain_1494	3
scaffold_17	starts_in_intron	1361419	1361419	-	asmbl_18748,asmbl_18750	none	STRG.19961.1,blat.proc3829897.chain_916	2	blat.proc3829897.chain_917	1
scaffold_15	starts_in_intron	4817264	4817264	-	asmbl_15172	none	blat.proc3829895.chain_2917	1	STRG.18192.1,blat.proc3829895.chain_2918,blat.proc3829895.chain_2920	3
scaffold_21	retained_intron	10497854	10497950	-	asmbl_28074,asmbl_28076	none	blat.proc3829899.chain_1647,blat.proc3829899.chain_1650	2	STRG.24504.1,blat.proc3829899.chain_1648,blat.proc3829899.chain_1649	3
scaffold_13	alt_acceptor	12244972	12244973	+	asmbl_11325,asmbl_11327	none	STRG.16345.1,STRG.16345.2	2	STRG.16345.3	1
scaffold_4	retained_intron	4417425	4417532	+	asmbl_42574,asmbl_42575,asmbl_42586,asmbl_42590	none	Trinity_GG_2404_c0_g1_i10,Trinity_GG_2404_c0_g1_i19,blat.proc3829873.chain_685,blat.proc3829873.chain_687,blat.proc3829873.chain_689,blat.proc3829873.chain_690	6	STRG.4344.1,STRG.4344.2,STRG.4344.3,STRG.4344.4,Trinity_GG_2404_c0_g1_i5,blat.proc3829873.chain_681,blat.proc3829873.chain_682,blat.proc3829873.chain_686,blat.proc3829873.chain_691,blat.proc3829873.chain_696,blat.proc3829873.chain_697,blat.proc3829873.chain_698	12
scaffold_18	retained_exon	11913976	11914077	+	asmbl_20978	none	STRG.21685.1	1	STRG.21685.2,blat.proc3829881.chain_2645	2
scaffold_6	alternate_exon	2878887	2878940	-	asmbl_48125	none	STRG.7278.1	1	STRG.7278.2,blat.proc3829889.chain_3278	2
scaffold_23	alt_acceptor	10404999	10405000	+	asmbl_31152	none	STRG.26227.2	1	STRG.26227.1,blat.proc3829883.chain_3160	2
scaffold_27	alt_donor	2884398	2884399	-	asmbl_36820	none	STRG.28754.3	1	STRG.28754.1,STRG.28754.2,blat.proc3829901.chain_1866,blat.proc3829901.chain_1867	4
scaffold_26	alternate_exon	5036960	5037147	+	asmbl_35464,asmbl_35466,asmbl_35482	none	blat.proc3829885.chain_1156,blat.proc3829885.chain_1159,blat.proc3829885.chain_1166	3	STRG.28206.1,STRG.28206.2,blat.proc3829885.chain_1157,blat.proc3829885.chain_1160,blat.proc3829885.chain_1162,blat.proc3829885.chain_1164,blat.proc3829885.chain_1165,blat.proc3829885.chain_1168	8
scaffold_13	alternate_exon	13272234	13273378	+	asmbl_11362	none	STRG.16385.1,blat.proc3829879.chain_1112	2	STRG.16385.2	1
scaffold_8	starts_in_intron	12049302	12049302	-	asmbl_53181	none	blat.proc3829891.chain_2509	1	STRG.10393.1,blat.proc3829891.chain_2510	2
scaffold_15	alt_acceptor	8165667	8165668	+	asmbl_14265	none	STRG.18377.1,blat.proc3829879.chain_3009,blat.proc3829879.chain_3010	3	STRG.18377.2	1
scaffold_20	alternate_exon	11774945	11776965	-	asmbl_27123	none	STRG.23671.2,Trinity_GG_30187_c0_g1_i3,blat.proc3829899.chain_671	3	STRG.23671.3,Trinity_GG_30187_c0_g1_i1,blat.proc3829899.chain_669	3
scaffold_14	skipped_exon	11663691	11664754	-	asmbl_13497,asmbl_13498,asmbl_13500	none	STRG.17495.1,STRG.17495.2,blat.proc3829895.chain_2185,blat.proc3829895.chain_2186,blat.proc3829895.chain_2187	5	blat.proc3829895.chain_2184	1
scaffold_7	alternate_exon	6652792	6652956	-	asmbl_49742	none	STRG.8928.2,blat.proc3829891.chain_1243	2	STRG.8928.1,blat.proc3829891.chain_1244	2
scaffold_24	starts_in_intron	2434041	2434041	+	asmbl_32106	none	Trinity_GG_14607_c0_g1_i3,blat.proc3829883.chain_3334	2	STRG.26445.1,STRG.26445.2,blat.proc3829883.chain_3333,blat.proc3829883.chain_3335	4
scaffold_3	spliced_intron	14332211	14332313	+	asmbl_40471	none	blat.proc3829873.chain_179	1	STRG.3778.1,blat.proc3829873.chain_178,blat.proc3829873.chain_180	3
scaffold_14	alternate_exon	12634340	12634625	-	asmbl_13565,asmbl_13569,asmbl_13570	none	STRG.17566.3,blat.proc3829895.chain_2330,blat.proc3829895.chain_2332,blat.proc3829895.chain_2333	4	STRG.17566.1,STRG.17566.4,blat.proc3829895.chain_2326,blat.proc3829895.chain_2327,blat.proc3829895.chain_2329,blat.proc3829895.chain_2331	6
scaffold_3	starts_in_intron	3642461	3642461	-	asmbl_38733	none	blat.proc3829887.chain_2786	1	STRG.3079.1,blat.proc3829887.chain_2787	2
scaffold_8	ends_in_intron	3604548	3604548	+	asmbl_51772	none	blat.proc3829875.chain_2270	1	STRG.9847.2,blat.proc3829875.chain_2273	2
scaffold_3	alt_acceptor	7958112	7958113	-	asmbl_38956,asmbl_38959	none	STRG.3388.1,blat.proc3829887.chain_3109,blat.proc3829887.chain_3112	3	STRG.3388.2,blat.proc3829887.chain_3108,blat.proc3829887.chain_3111	3
scaffold_6	spliced_intron	17522323	17523320	+	asmbl_47700,asmbl_47701	none	STRG.8451.1,STRG.8451.4,blat.proc3829875.chain_843	3	STRG.8451.2,Trinity_GG_4648_c1_g1_i1,Trinity_GG_4648_c1_g1_i4,blat.proc3829875.chain_841,blat.proc3829875.chain_842	5
scaffold_2	retained_intron	16087681	16088030	-	asmbl_23683	none	Trinity_GG_18420_c0_g1_i3,blat.proc3829887.chain_2400	2	STRG.2559.1,blat.proc3829887.chain_2398,blat.proc3829887.chain_2399,blat.proc3829887.chain_2401	4
scaffold_1	spliced_intron	1432116	1432283	-	asmbl_70	none	STRG.83.2	1	STRG.83.1,Trinity_GG_17024_c0_g1_i1,blat.proc3829885.chain_3677	3
scaffold_15	starts_in_intron	4153478	4153478	-	asmbl_15144	none	Trinity_GG_27221_c0_g1_i3,blat.proc3829895.chain_2885	2	STRG.18145.1,Trinity_GG_27221_c0_g1_i1,Trinity_GG_27221_c0_g1_i2,blat.proc3829895.chain_2884,blat.proc3829895.chain_2886	5
scaffold_23	skipped_exon	8199021	8199981	+	asmbl_31063	none	blat.proc3829883.chain_2937	1	STRG.26112.1,STRG.26112.2,blat.proc3829883.chain_2936,blat.proc3829883.chain_2938	4
scaffold_4	alt_acceptor	7991092	7991093	+	asmbl_42857	none	STRG.4620.2,blat.proc3829873.chain_914	2	STRG.4620.3	1
scaffold_23	alt_acceptor	2164418	2164419	-	asmbl_31417	none	STRG.25669.6	1	STRG.25669.1,STRG.25669.3,STRG.25669.4,STRG.25669.5,STRG.25669.7	5
scaffold_19	retained_intron	3669778	3669984	-	asmbl_21326,asmbl_21329	none	STRG.22034.4,Trinity_GG_29269_c0_g1_i1,blat.proc3829897.chain_2744	3	STRG.22034.2,Trinity_GG_29269_c0_g1_i5,blat.proc3829897.chain_2739	3
scaffold_24	ends_in_intron	8955026	8955026	+	asmbl_32467	none	blat.proc3829885.chain_25	1	STRG.26896.1,Trinity_GG_14866_c0_g1_i3,blat.proc3829885.chain_26,blat.proc3829885.chain_27	4
scaffold_18	alt_acceptor	3733168	3733169	-	asmbl_19803	none	STRG.21177.1,blat.proc3829897.chain_2069	2	STRG.21177.2,blat.proc3829897.chain_2068	2
scaffold_11	skipped_exon	1571628	1572065	+	asmbl_5294	none	blat.proc3829893.chain_1799	1	blat.proc3829893.chain_1798	1
scaffold_1	starts_in_intron	7207346	7207346	+	asmbl_1886	none	blat.proc3829871.chain_581	1	STRG.513.1,blat.proc3829871.chain_582	2
scaffold_23	retained_exon	10976189	10976361	+	asmbl_31186,asmbl_31189,asmbl_31191,asmbl_31194,asmbl_31195,asmbl_31196	none	STRG.26281.1,Trinity_GG_14524_c0_g1_i13,Trinity_GG_14524_c0_g1_i8,blat.proc3829883.chain_3193,blat.proc3829883.chain_3194,blat.proc3829883.chain_3195,blat.proc3829883.chain_3199,blat.proc3829883.chain_3200,blat.proc3829883.chain_3203	9	STRG.26281.2	1
scaffold_2	retained_intron	5391853	5391982	-	asmbl_23174	none	blat.proc3829887.chain_1756	1	STRG.1948.2	1
scaffold_5	alternate_exon	16740604	16740940	-	asmbl_46151	none	STRG.6857.1,Trinity_GG_20862_c0_g1_i1,blat.proc3829889.chain_2901	3	STRG.6857.2,Trinity_GG_20862_c0_g1_i2,blat.proc3829889.chain_2902	3
scaffold_19	alt_acceptor	8840	8841	+	asmbl_21969	none	STRG.21807.1	1	STRG.21807.3	1
scaffold_22	spliced_intron	504274	504463	-	asmbl_29854,asmbl_29862,asmbl_29864,asmbl_29865,asmbl_29866	none	STRG.24685.1,STRG.24685.2,blat.proc3829899.chain_1824,blat.proc3829899.chain_1826,blat.proc3829899.chain_1829,blat.proc3829899.chain_1831,blat.proc3829899.chain_1834	7	blat.proc3829899.chain_1821,blat.proc3829899.chain_1823	2
scaffold_18	spliced_intron	7199469	7200059	+	asmbl_20748	none	STRG.21415.1,Trinity_GG_11823_c0_g1_i1,blat.proc3829881.chain_2375	3	STRG.21415.3,Trinity_GG_11823_c0_g1_i2,blat.proc3829881.chain_2374	3
scaffold_22	alt_acceptor	4282986	4282987	-	asmbl_30002,asmbl_30003,asmbl_30005	none	STRG.24837.1,STRG.24837.2,STRG.24837.3,blat.proc3829899.chain_1952,blat.proc3829899.chain_1956	5	blat.proc3829899.chain_1955	1
scaffold_23	retained_exon	5583838	5583875	+	asmbl_30884	none	STRG.25912.4	1	STRG.25912.1,STRG.25912.2,Trinity_GG_14263_c0_g1_i1,blat.proc3829883.chain_2728	4
scaffold_1	alt_acceptor	9171405	9171406	-	asmbl_525	none	STRG.611.1,Trinity_GG_17347_c0_g1_i1,blat.proc3829887.chain_522	3	STRG.611.2	1
scaffold_6	retained_exon	18917077	18917158	-	asmbl_49222,asmbl_49223	none	STRG.8553.2,STRG.8553.3,blat.proc3829891.chain_869,blat.proc3829891.chain_870	4	STRG.8553.1	1
scaffold_24	retained_exon	4280562	4281195	+	asmbl_32190	none	STRG.26568.1,blat.proc3829883.chain_3466	2	STRG.26568.3	1
scaffold_18	alternate_exon	4768832	4769669	+	asmbl_20591	none	STRG.21260.5	1	STRG.21260.4,Trinity_GG_11674_c0_g1_i2,blat.proc3829881.chain_2086	3
scaffold_6	retained_intron	12484297	12484381	+	asmbl_47339,asmbl_47340	none	STRG.8000.2,STRG.8000.3,Trinity_GG_4381_c0_g1_i1,Trinity_GG_4381_c0_g1_i3,blat.proc3829875.chain_393,blat.proc3829875.chain_394	6	STRG.8000.1,Trinity_GG_4381_c0_g1_i2,blat.proc3829875.chain_392	3
scaffold_4	spliced_intron	16912206	16912492	+	asmbl_43347	none	STRG.5280.1	1	STRG.5280.3	1
scaffold_21	retained_intron	9780293	9781249	+	asmbl_28855	none	STRG.24419.1,Trinity_GG_13514_c0_g1_i1,blat.proc3829883.chain_1515	3	STRG.24419.2	1
scaffold_13	alt_acceptor	3526670	3526671	+	asmbl_10684,asmbl_10686,asmbl_10687	none	STRG.15655.1,blat.proc3829879.chain_361,blat.proc3829879.chain_363,blat.proc3829879.chain_364	4	STRG.15655.2,blat.proc3829879.chain_362	2
scaffold_4	retained_exon	12571256	12571368	-	asmbl_41674	none	STRG.4898.1,blat.proc3829889.chain_965	2	STRG.4898.2,blat.proc3829889.chain_966	2
scaffold_14	alt_acceptor	8277344	8277345	+	asmbl_12194	none	STRG.17235.1,blat.proc3829879.chain_1990	2	STRG.17235.4,blat.proc3829879.chain_1989	2
scaffold_8	alternate_exon	4340618	4341108	+	asmbl_51824	none	STRG.9912.3,blat.proc3829875.chain_2388	2	STRG.9912.1,blat.proc3829875.chain_2389	2
scaffold_18	spliced_intron	4571830	4572199	+	asmbl_20559,asmbl_20561,asmbl_20562,asmbl_20563	none	STRG.21237.1,STRG.21237.2,blat.proc3829881.chain_2151,blat.proc3829881.chain_2152,blat.proc3829881.chain_2153	5	blat.proc3829881.chain_2154	1
scaffold_18	alt_acceptor	2394215	2394216	-	asmbl_19762	none	STRG.21108.1,blat.proc3829897.chain_2018	2	STRG.21108.3,Trinity_GG_28850_c0_g1_i3,blat.proc3829897.chain_2017	3
scaffold_24	alt_acceptor	9956864	9956865	-	asmbl_33151	none	STRG.26947.8	1	STRG.26947.1,STRG.26947.3,STRG.26947.4,blat.proc3829901.chain_245,blat.proc3829901.chain_248,blat.proc3829901.chain_249,blat.proc3829901.chain_250	7
scaffold_15	retained_intron	15176771	15176878	+	asmbl_14676,asmbl_14683,asmbl_14686,asmbl_14689	none	blat.proc3829879.chain_3475,blat.proc3829879.chain_3479,blat.proc3829879.chain_3480,blat.proc3829879.chain_3485	4	STRG.18906.1,STRG.18906.2,STRG.18906.3,STRG.18906.4,blat.proc3829879.chain_3471,blat.proc3829879.chain_3472,blat.proc3829879.chain_3473,blat.proc3829879.chain_3474,blat.proc3829879.chain_3476,blat.proc3829879.chain_3477,blat.proc3829879.chain_3478,blat.proc3829879.chain_3484,blat.proc3829879.chain_3486,blat.proc3829879.chain_3487	14
scaffold_12	starts_in_intron	14990148	14990148	-	asmbl_8159	none	Trinity_GG_25571_c0_g1_i5,blat.proc3829893.chain_3741	2	STRG.15282.1,STRG.15282.2,Trinity_GG_25571_c0_g1_i1,Trinity_GG_25571_c0_g1_i4,blat.proc3829893.chain_3742,blat.proc3829893.chain_3744	6
scaffold_15	retained_intron	8829496	8829673	+	asmbl_14302,asmbl_14303	none	Trinity_GG_10116_c0_g1_i2,blat.proc3829879.chain_3053,blat.proc3829879.chain_3055	3	STRG.18418.1,blat.proc3829879.chain_3054	2
scaffold_13	ends_in_intron	6048409	6048409	-	asmbl_9724	none	STRG.15900.5,blat.proc3829895.chain_625	2	STRG.15900.2,blat.proc3829895.chain_628,blat.proc3829895.chain_630	3
scaffold_3	skipped_exon	9843938	9845789	-	asmbl_39024	none	STRG.3457.2,blat.proc3829887.chain_3242	2	STRG.3457.1,blat.proc3829887.chain_3245	2
scaffold_17	ends_in_intron	11338545	11338545	-	asmbl_19326	none	blat.proc3829897.chain_1583	1	STRG.20676.1,STRG.20676.2,blat.proc3829897.chain_1581,blat.proc3829897.chain_1582	4
scaffold_8	alt_donor	6809250	6809251	-	asmbl_52883	none	STRG.10035.3	1	STRG.10035.1,blat.proc3829891.chain_2192,blat.proc3829891.chain_2194	3
scaffold_10	alt_donor	12885449	12885450	+	asmbl_4825	none	STRG.12869.2,blat.proc3829877.chain_1454	2	STRG.12869.1,Trinity_GG_7102_c0_g1_i1,Trinity_GG_7102_c0_g1_i2,blat.proc3829877.chain_1452,blat.proc3829877.chain_1453	5
scaffold_22	retained_exon	7691782	7691840	+	asmbl_29502	none	STRG.25104.2,blat.proc3829883.chain_2073	2	STRG.25104.1	1
scaffold_3	retained_exon	10296535	10296612	+	asmbl_40214	none	STRG.3464.1,blat.proc3829871.chain_3647	2	STRG.3464.2,blat.proc3829871.chain_3648	2
scaffold_1	alternate_exon	12168863	12170872	+	asmbl_2169	none	STRG.845.2	1	STRG.845.1	1
scaffold_8	starts_in_intron	12910046	12910046	-	asmbl_53249	none	STRG.10471.1,Trinity_GG_22811_c5_g1_i1,blat.proc3829891.chain_2576	3	STRG.10471.2,STRG.10471.3	2
scaffold_13	alt_donor	2376098	2376099	-	asmbl_9414	none	STRG.15538.2,blat.proc3829895.chain_295	2	STRG.15538.1,STRG.15538.3,STRG.15538.4,blat.proc3829895.chain_294,blat.proc3829895.chain_296	5
scaffold_19	alternate_exon	12134528	12134607	+	asmbl_22563	none	STRG.22531.2,Trinity_GG_12454_c1_g1_i7,blat.proc3829881.chain_3458	3	STRG.22531.1,Trinity_GG_12454_c1_g1_i6,blat.proc3829881.chain_3460	3
scaffold_5	retained_intron	16091466	16091548	+	asmbl_44704	none	blat.proc3829873.chain_2869	1	STRG.6788.1,blat.proc3829873.chain_2867	2
scaffold_13	retained_exon	394757	394777	-	asmbl_9307,asmbl_9308,asmbl_9309,asmbl_9316,asmbl_9317	none	STRG.15428.1,STRG.15428.2,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i8,blat.proc3829895.chain_226,blat.proc3829895.chain_230,blat.proc3829895.chain_233	8	STRG.15428.3,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_221,blat.proc3829895.chain_224	5
scaffold_7	retained_exon	1430110	1430166	-	asmbl_49540	none	STRG.8631.2,blat.proc3829891.chain_1004	2	STRG.8631.1,blat.proc3829891.chain_1002,blat.proc3829891.chain_1003	3
scaffold_2	alt_donor	18307273	18307274	-	asmbl_23792	none	STRG.2713.3	1	STRG.2713.2,blat.proc3829887.chain_2539	2
scaffold_6	retained_exon	9909810	9909893	+	asmbl_47186	none	STRG.7827.2	1	STRG.7827.4	1
scaffold_8	ends_in_intron	16228910	16228910	+	asmbl_52431	none	Trinity_GG_5907_c0_g1_i1,blat.proc3829875.chain_3132	2	STRG.10606.2,Trinity_GG_5907_c0_g1_i6,blat.proc3829875.chain_3131	3
scaffold_13	retained_intron	4457825	4458511	+	asmbl_10773	none	STRG.15755.2,Trinity_GG_8663_c0_g2_i2,blat.proc3829879.chain_450,blat.proc3829879.chain_455	4	STRG.15755.1,Trinity_GG_8663_c0_g1_i6,blat.proc3829879.chain_451,blat.proc3829879.chain_452	4
scaffold_7	spliced_intron	12649977	12650578	-	asmbl_50075	none	STRG.9370.1,blat.proc3829891.chain_1618	2	STRG.9370.2,blat.proc3829891.chain_1620	2
scaffold_4	alt_acceptor	12535355	12535356	-	asmbl_41663	none	STRG.4888.2,blat.proc3829889.chain_930	2	STRG.4888.1	1
scaffold_23	alt_acceptor	6346021	6346022	+	asmbl_30916	none	STRG.25967.1,blat.proc3829883.chain_2842	2	STRG.25967.2	1
scaffold_6	alt_acceptor	10160579	10160580	-	asmbl_48601	none	STRG.7846.2	1	STRG.7846.1,blat.proc3829891.chain_111	2
scaffold_4	alt_acceptor	12629250	12629251	-	asmbl_41682	none	STRG.4901.2,blat.proc3829889.chain_895	2	blat.proc3829889.chain_894	1
scaffold_10	ends_in_intron	341697	341697	-	asmbl_2856	none	STRG.11910.2,Trinity_GG_23606_c1_g1_i1,blat.proc3829893.chain_300	3	STRG.11910.1,blat.proc3829893.chain_298,blat.proc3829893.chain_299	3
scaffold_19	starts_in_intron	13007319	13007319	+	asmbl_22646,asmbl_22647	none	Trinity_GG_12510_c0_g1_i12,Trinity_GG_12510_c0_g1_i4,blat.proc3829881.chain_3577,blat.proc3829881.chain_3580	4	STRG.22609.1,STRG.22609.2,Trinity_GG_12510_c0_g1_i1,Trinity_GG_12510_c0_g1_i10,Trinity_GG_12510_c0_g1_i11,Trinity_GG_12510_c0_g1_i5,Trinity_GG_12510_c0_g1_i6,Trinity_GG_12510_c0_g1_i8,blat.proc3829881.chain_3576,blat.proc3829881.chain_3578,blat.proc3829881.chain_3579,blat.proc3829881.chain_3583,blat.proc3829881.chain_3584,blat.proc3829881.chain_3585	14
scaffold_14	skipped_exon	6282250	6283420	+	asmbl_12036	none	STRG.17063.4,blat.proc3829879.chain_1745	2	STRG.17063.1,STRG.17063.2,STRG.17063.3,STRG.17063.5,blat.proc3829879.chain_1740,blat.proc3829879.chain_1741,blat.proc3829879.chain_1742,blat.proc3829879.chain_1744,blat.proc3829879.chain_1746	9
scaffold_20	retained_intron	9629566	9630290	+	asmbl_26025,asmbl_26026	none	STRG.23488.1,blat.proc3829883.chain_573,blat.proc3829883.chain_575	3	STRG.23488.2,STRG.23488.3,blat.proc3829883.chain_572	3
scaffold_18	retained_intron	1901421	1904370	-	asmbl_19689,asmbl_19690,asmbl_19695,asmbl_19696	none	STRG.21072.3,Trinity_GG_28789_c0_g2_i1,Trinity_GG_28789_c3_g1_i1,blat.proc3829897.chain_1897,blat.proc3829897.chain_1900,blat.proc3829897.chain_1901,blat.proc3829897.chain_1904,blat.proc3829897.chain_1907	8	STRG.21072.10,STRG.21072.2,STRG.21072.4,blat.proc3829897.chain_1892,blat.proc3829897.chain_1902	5
scaffold_5	spliced_intron	10304680	10304767	-	asmbl_45726,asmbl_45728	none	STRG.6325.1,blat.proc3829889.chain_2405,blat.proc3829889.chain_2406,blat.proc3829889.chain_2407,blat.proc3829889.chain_2408	5	blat.proc3829889.chain_2403,blat.proc3829889.chain_2404	2
scaffold_14	skipped_exon	8224202	8226095	+	asmbl_12190	none	STRG.17222.2,blat.proc3829879.chain_1986	2	STRG.17222.1,blat.proc3829879.chain_1985	2
scaffold_2	spliced_intron	166805	166882	+	asmbl_24095,asmbl_24097,asmbl_24098	none	STRG.1523.1,STRG.1523.2,blat.proc3829871.chain_1595,blat.proc3829871.chain_1599	4	blat.proc3829871.chain_1597	1
scaffold_1	alt_acceptor	11177129	11177130	+	asmbl_2064,asmbl_2065,asmbl_2066,asmbl_2069,asmbl_2073,asmbl_2074,asmbl_2076	none	STRG.743.1,STRG.743.2,STRG.743.3,STRG.743.4,STRG.743.5,blat.proc3829871.chain_815,blat.proc3829871.chain_819,blat.proc3829871.chain_820,blat.proc3829871.chain_821,blat.proc3829871.chain_824,blat.proc3829871.chain_825	11	blat.proc3829871.chain_822	1
scaffold_18	starts_in_intron	4444971	4444971	+	asmbl_20548	none	blat.proc3829881.chain_2129	1	STRG.21223.1,STRG.21223.2,blat.proc3829881.chain_2126,blat.proc3829881.chain_2127	4
scaffold_13	retained_intron	6852392	6852680	+	asmbl_10973	none	STRG.15962.2,blat.proc3829879.chain_673	2	STRG.15962.1,blat.proc3829879.chain_671,blat.proc3829879.chain_672	3
scaffold_25	starts_in_intron	2648337	2648337	+	asmbl_33394	none	Trinity_GG_15001_c0_g1_i1,blat.proc3829885.chain_255	2	STRG.27212.1,blat.proc3829885.chain_256	2
scaffold_1	alternate_exon	415093	415257	-	asmbl_19	none	STRG.21.2,blat.proc3829885.chain_3679,blat.proc3829885.chain_3680	3	STRG.21.1	1
scaffold_19	alt_acceptor	8753751	8753752	+	asmbl_22352	none	STRG.22316.1,blat.proc3829881.chain_3257	2	blat.proc3829881.chain_3258	1
scaffold_7	skipped_exon	6036365	6037066	+	asmbl_50720	none	STRG.8898.2,Trinity_GG_4914_c0_g1_i1,blat.proc3829875.chain_1340	3	STRG.8898.1,Trinity_GG_4914_c0_g1_i5,blat.proc3829875.chain_1338	3
scaffold_723	starts_in_intron	1927	1927	-	asmbl_51570	none	Trinity_GG_9786_c0_g2_i1,blat.proc3829901.chain_3460	2	STRG.30418.1,STRG.30418.2,blat.proc3829901.chain_3461,blat.proc3829901.chain_3463,blat.proc3829901.chain_3464,blat.proc3829901.chain_3465	6
scaffold_19	ends_in_intron	10852744	10852744	-	asmbl_21571	none	Trinity_GG_29441_c0_g1_i1,blat.proc3829897.chain_3025	2	STRG.22416.1,STRG.22416.2,Trinity_GG_29441_c0_g1_i3,blat.proc3829897.chain_3024	4
scaffold_27	retained_intron	294852	294971	+	asmbl_35907	none	STRG.28537.1,Trinity_GG_15803_c0_g1_i1,blat.proc3829885.chain_1593	3	STRG.28537.2,Trinity_GG_15803_c0_g1_i2,blat.proc3829885.chain_1594	3
scaffold_9	alternate_exon	4826626	4827286	+	asmbl_53939	none	STRG.11047.1,blat.proc3829875.chain_3455	2	STRG.11047.2,Trinity_GG_6111_c0_g1_i2,blat.proc3829875.chain_3454	3
scaffold_13	retained_intron	1238200	1238338	+	asmbl_10524,asmbl_10525	none	blat.proc3829879.chain_208,blat.proc3829879.chain_209	2	STRG.15478.1,STRG.15478.2,STRG.15478.4,STRG.15478.5,STRG.15478.6,STRG.15478.7,Trinity_GG_8526_c0_g2_i3,blat.proc3829879.chain_204,blat.proc3829879.chain_205,blat.proc3829879.chain_207	10
scaffold_5	retained_intron	4865673	4866834	+	asmbl_43973,asmbl_43974	none	STRG.5938.3,Trinity_GG_3273_c0_g1_i2,Trinity_GG_3273_c0_g1_i4,blat.proc3829873.chain_2134,blat.proc3829873.chain_2135	5	STRG.5938.1,blat.proc3829873.chain_2137	2
scaffold_17	skipped_exon	543556	545026	+	asmbl_17679	none	STRG.19891.3	1	STRG.19891.1,Trinity_GG_10901_c0_g1_i2,blat.proc3829881.chain_737	3
scaffold_25	alternate_exon	6162593	6162986	+	asmbl_33593	none	STRG.27487.2,blat.proc3829885.chain_496	2	STRG.27487.1	1
scaffold_11	ends_in_intron	9531702	9531702	-	asmbl_6923	none	Trinity_GG_24790_c0_g1_i2,blat.proc3829893.chain_2356	2	STRG.13969.1,blat.proc3829893.chain_2355	2
scaffold_25	alt_donor	666084	666085	+	asmbl_33341	none	STRG.27104.2	1	STRG.27104.1	1
scaffold_15	retained_intron	1712462	1712546	+	asmbl_13976,asmbl_13977,asmbl_13978	none	blat.proc3829879.chain_2609,blat.proc3829879.chain_2611,blat.proc3829879.chain_2614	3	STRG.17968.1,STRG.17968.2,STRG.17968.3,blat.proc3829879.chain_2610,blat.proc3829879.chain_2612	5
scaffold_3	spliced_intron	6049629	6049714	-	asmbl_38833,asmbl_38834,asmbl_38836,asmbl_38839	none	STRG.3255.1,STRG.3255.2,STRG.3255.5,Trinity_GG_18777_c0_g1_i1,blat.proc3829887.chain_2985,blat.proc3829887.chain_2986	6	STRG.3255.7	1
scaffold_28	retained_intron	3168895	3169011	+	asmbl_38144,asmbl_38145	none	STRG.29506.1,STRG.29506.2,Trinity_GG_16320_c0_g1_i1,blat.proc3829885.chain_2536	4	Trinity_GG_16320_c0_g1_i2,blat.proc3829885.chain_2537	2
scaffold_25	alt_acceptor	4877161	4877162	+	asmbl_33542	none	STRG.27405.2	1	STRG.27405.1,Trinity_GG_15110_c0_g1_i2,blat.proc3829885.chain_434	3
scaffold_17	alternate_exon	8884850	8884915	+	asmbl_18171	none	STRG.20500.2,Trinity_GG_11210_c0_g1_i2,blat.proc3829881.chain_1245	3	STRG.20500.1,blat.proc3829881.chain_1244	2
scaffold_9	retained_exon	6867066	6867131	-	asmbl_55042,asmbl_55043	none	STRG.11186.1,Trinity_GG_23216_c0_g1_i5,blat.proc3829891.chain_3333,blat.proc3829891.chain_3334	4	blat.proc3829891.chain_3331	1
scaffold_6	alt_acceptor	8642214	8642215	+	asmbl_47107	none	STRG.7737.3	1	STRG.7737.1,STRG.7737.2,blat.proc3829875.chain_103,blat.proc3829875.chain_104,blat.proc3829875.chain_105	5
scaffold_7	ends_in_intron	8316606	8316606	-	asmbl_49816,asmbl_49817	none	blat.proc3829891.chain_1323,blat.proc3829891.chain_1324	2	STRG.9058.4	1
scaffold_12	starts_in_intron	7650531	7650531	+	asmbl_8741	none	Trinity_GG_8196_c0_g1_i3,blat.proc3829877.chain_3326	2	STRG.14833.3	1
scaffold_14	retained_exon	14147913	14147954	+	asmbl_12509,asmbl_12514	none	STRG.17676.2,blat.proc3829879.chain_2283,blat.proc3829879.chain_2284	3	STRG.17676.3,STRG.17676.5	2
scaffold_11	retained_intron	9832014	9832321	+	asmbl_5873	none	blat.proc3829877.chain_2508	1	Trinity_GG_7729_c0_g1_i7,blat.proc3829877.chain_2507	2
scaffold_26	alt_donor	2789067	2789068	+	asmbl_35288	none	Trinity_GG_15422_c0_g1_i3,blat.proc3829885.chain_932	2	STRG.27956.1,Trinity_GG_15422_c0_g1_i1,blat.proc3829885.chain_933	3
scaffold_19	retained_exon	12972818	12972868	-	asmbl_21785,asmbl_21789,asmbl_21791	none	STRG.22606.2,Trinity_GG_29578_c0_g1_i1,Trinity_GG_29578_c0_g1_i6,Trinity_GG_29578_c0_g1_i7,blat.proc3829897.chain_3318,blat.proc3829897.chain_3322,blat.proc3829897.chain_3325	7	STRG.22606.1,STRG.22606.4,Trinity_GG_29578_c0_g1_i2,Trinity_GG_29578_c0_g1_i4,Trinity_GG_29578_c0_g1_i8,blat.proc3829897.chain_3320,blat.proc3829897.chain_3323,blat.proc3829897.chain_3324	8
scaffold_15	retained_intron	13041931	13042295	+	asmbl_14560,asmbl_14563	none	Trinity_GG_10288_c0_g1_i2,blat.proc3829879.chain_3345,blat.proc3829879.chain_3348	3	STRG.18730.1,Trinity_GG_10288_c0_g1_i1,blat.proc3829879.chain_3347	3
scaffold_11	retained_intron	6952172	6952274	-	asmbl_6724,asmbl_6727	none	STRG.13710.3,blat.proc3829893.chain_2161,blat.proc3829893.chain_2165	3	STRG.13710.1,STRG.13710.2,blat.proc3829893.chain_2162,blat.proc3829893.chain_2163,blat.proc3829893.chain_2164	5
scaffold_3	alt_acceptor	2952756	2952757	+	asmbl_39882	none	STRG.3052.1	1	STRG.3052.2	1
scaffold_22	skipped_exon	9157307	9158488	-	asmbl_30282,asmbl_30285	none	STRG.25232.2,Trinity_GG_31086_c0_g1_i2,blat.proc3829899.chain_2274	3	STRG.25232.1,blat.proc3829899.chain_2273	2
scaffold_10	starts_in_intron	2729990	2729990	+	asmbl_4282	none	Trinity_GG_6729_c0_g1_i2,blat.proc3829877.chain_800	2	STRG.12082.1,blat.proc3829877.chain_799	2
scaffold_13	ends_in_intron	7999824	7999824	-	asmbl_9890	none	Trinity_GG_26022_c0_g2_i1,blat.proc3829895.chain_790	2	STRG.16065.1,STRG.16065.2,STRG.16065.3,blat.proc3829895.chain_785,blat.proc3829895.chain_787,blat.proc3829895.chain_788,blat.proc3829895.chain_789	7
scaffold_5	alternate_exon	7978658	7978754	-	asmbl_45578	none	STRG.6162.2	1	STRG.6162.1,blat.proc3829889.chain_2183	2
scaffold_9	starts_in_intron	17850308	17850308	+	asmbl_54630,asmbl_54631	none	blat.proc3829877.chain_591	1	STRG.11860.1,STRG.11860.2	2
scaffold_12	alt_acceptor	7661362	7661363	+	asmbl_8746,asmbl_8748	none	STRG.14837.2,blat.proc3829877.chain_3340,blat.proc3829877.chain_3341,blat.proc3829877.chain_3342	4	STRG.14837.1	1
scaffold_11	starts_in_intron	2287963	2287963	+	asmbl_5326	none	blat.proc3829877.chain_1875	1	STRG.13379.1,blat.proc3829877.chain_1874	2
scaffold_16	alt_acceptor	9360620	9360621	-	asmbl_16460	none	STRG.19520.1,Trinity_GG_27970_c0_g1_i1,blat.proc3829897.chain_543	3	STRG.19520.2	1
scaffold_7	ends_in_intron	8322530	8322530	-	asmbl_49814	none	Trinity_GG_22128_c1_g1_i2,blat.proc3829891.chain_1325	2	STRG.9058.4,blat.proc3829891.chain_1323,blat.proc3829891.chain_1324	3
scaffold_2	retained_intron	7894830	7894910	+	asmbl_24626,asmbl_24627,asmbl_24628,asmbl_24629,asmbl_24630	none	STRG.2086.2,STRG.2086.3,Trinity_GG_1187_c0_g1_i12,Trinity_GG_1187_c0_g1_i17,blat.proc3829871.chain_2190,blat.proc3829871.chain_2193,blat.proc3829871.chain_2194,blat.proc3829871.chain_2195,blat.proc3829871.chain_2198,blat.proc3829871.chain_2199	10	STRG.2086.1,blat.proc3829871.chain_2189,blat.proc3829871.chain_2191,blat.proc3829871.chain_2196	4
scaffold_25	skipped_exon	3820067	3820402	-	asmbl_34143	none	Trinity_GG_32309_c0_g1_i3,blat.proc3829901.chain_623	2	STRG.27321.1,STRG.27321.2,Trinity_GG_32309_c0_g1_i2,blat.proc3829901.chain_622	4
scaffold_7	ends_in_intron	7782122	7782122	-	asmbl_49784	none	blat.proc3829891.chain_1291	1	STRG.9020.1,Trinity_GG_22116_c0_g1_i2,blat.proc3829891.chain_1292	3
scaffold_28	spliced_intron	9441283	9441479	-	asmbl_37843	none	STRG.29952.1	1	blat.proc3829901.chain_3079	1
scaffold_6	alternate_exon	10138355	10138487	-	asmbl_48588	none	STRG.7838.1,blat.proc3829891.chain_79	2	STRG.7838.2,STRG.7838.3,Trinity_GG_21433_c1_g1_i1,blat.proc3829891.chain_80	4
scaffold_11	alternate_exon	9149170	9149570	+	asmbl_5834	none	STRG.13940.1,blat.proc3829877.chain_2458	2	STRG.13940.3	1
scaffold_6	retained_exon	2844585	2844644	-	asmbl_48117	none	STRG.7273.1,blat.proc3829889.chain_3204	2	STRG.7273.2,STRG.7273.3,blat.proc3829889.chain_3202,blat.proc3829889.chain_3205	4
scaffold_6	alt_acceptor	12521078	12521079	-	asmbl_48748	none	STRG.8002.1,blat.proc3829891.chain_302	2	STRG.8002.2,STRG.8002.4,blat.proc3829891.chain_300,blat.proc3829891.chain_301	4
scaffold_18	skipped_exon	3636836	3638415	+	asmbl_20492,asmbl_20493	none	STRG.21169.1,STRG.21169.2,blat.proc3829881.chain_2051,blat.proc3829881.chain_2052	4	STRG.21169.3,blat.proc3829881.chain_2050	2
scaffold_19	spliced_intron	7702234	7702855	+	asmbl_22293,asmbl_22295,asmbl_22297	none	STRG.22243.1,STRG.22243.2,blat.proc3829881.chain_3149,blat.proc3829881.chain_3151	4	blat.proc3829881.chain_3150	1
scaffold_8	retained_intron	17839229	17839334	+	asmbl_52508	none	Trinity_GG_5887_c0_g1_i1,blat.proc3829875.chain_3093	2	STRG.10685.1,Trinity_GG_5887_c0_g1_i3,blat.proc3829875.chain_3094	3
scaffold_1	alt_acceptor	6817609	6817610	-	asmbl_387	none	STRG.476.1	1	blat.proc3829887.chain_383	1
scaffold_5	retained_exon	992825	992900	+	asmbl_43773	none	STRG.5645.1	1	STRG.5645.2,blat.proc3829873.chain_1820,blat.proc3829873.chain_1821	3
scaffold_5	retained_exon	9694783	9694901	+	asmbl_44296,asmbl_44297	none	STRG.6282.1,STRG.6282.2,blat.proc3829873.chain_2435,blat.proc3829873.chain_2436	4	STRG.6282.3	1
scaffold_3	starts_in_intron	14488237	14488237	-	asmbl_39329	none	blat.proc3829887.chain_3594	1	STRG.3788.1,Trinity_GG_19109_c1_g1_i2,blat.proc3829887.chain_3592,blat.proc3829887.chain_3593	4
scaffold_25	alternate_exon	7320859	7322410	-	asmbl_34368	none	STRG.27566.1	1	blat.proc3829885.chain_601	1
scaffold_4	alt_donor	17569549	17569550	-	asmbl_42034,asmbl_42038,asmbl_42040	none	STRG.5346.1,STRG.5346.2,STRG.5346.3	3	STRG.5346.4	1
scaffold_24	retained_intron	5948199	5949651	+	asmbl_32263	none	Trinity_GG_14738_c0_g1_i18,blat.proc3829883.chain_3540	2	STRG.26645.1,blat.proc3829883.chain_3537,blat.proc3829883.chain_3539,blat.proc3829883.chain_3541,blat.proc3829883.chain_3542,blat.proc3829883.chain_3543,blat.proc3829883.chain_3544,blat.proc3829883.chain_3545,blat.proc3829883.chain_3546,blat.proc3829883.chain_3547,blat.proc3829883.chain_3548,blat.proc3829883.chain_3549	12
scaffold_15	retained_exon	8074969	8075043	-	asmbl_15352	none	STRG.18373.2,blat.proc3829895.chain_3062	2	STRG.18373.1,blat.proc3829895.chain_3061	2
scaffold_6	alt_acceptor	299071	299072	+	asmbl_46600	none	STRG.7082.4,Trinity_GG_3916_c0_g1_i2,blat.proc3829873.chain_3251	3	STRG.7082.2,Trinity_GG_3916_c0_g1_i8,blat.proc3829873.chain_3249	3
scaffold_5	retained_intron	188746	188784	+	asmbl_43748,asmbl_43749,asmbl_43751	none	STRG.5581.1,STRG.5581.2,STRG.5581.3	3	STRG.5581.4	1
scaffold_15	starts_in_intron	4982752	4982752	-	asmbl_15187	none	STRG.18197.2,blat.proc3829895.chain_2989	2	STRG.18197.1,STRG.18197.3,STRG.18197.4,blat.proc3829895.chain_2985,blat.proc3829895.chain_2986,blat.proc3829895.chain_2987	6
scaffold_44	alt_donor	21034	21035	-	asmbl_43688	none	STRG.30026.2	1	STRG.30026.1,blat.proc3829901.chain_3132	2
scaffold_16	spliced_intron	10447527	10449544	+	asmbl_17338	none	STRG.19602.4	1	STRG.19602.3,Trinity_GG_10708_c1_g1_i1,blat.proc3829881.chain_426,blat.proc3829881.chain_427	4
scaffold_25	spliced_intron	6325646	6326095	-	asmbl_34329,asmbl_34331,asmbl_34334,asmbl_34335	none	STRG.27499.1,STRG.27499.2,blat.proc3829901.chain_862,blat.proc3829901.chain_864,blat.proc3829901.chain_865	5	STRG.27499.3,blat.proc3829901.chain_861	2
scaffold_22	retained_intron	4408885	4409056	-	asmbl_30021	none	Trinity_GG_30859_c0_g1_i2,blat.proc3829899.chain_1903	2	STRG.24849.1,blat.proc3829899.chain_1902	2
scaffold_28	alternate_exon	8316810	8316926	-	asmbl_37781	none	STRG.29891.1,blat.proc3829901.chain_3015	2	STRG.29891.2,STRG.29891.3	2
scaffold_27	retained_exon	3972444	3972536	+	asmbl_36203	none	STRG.28842.1,Trinity_GG_15960_c0_g1_i1,blat.proc3829885.chain_1917,blat.proc3829885.chain_1919	4	STRG.28842.2	1
scaffold_1	starts_in_intron	6282208	6282208	-	asmbl_344	none	blat.proc3829887.chain_326	1	STRG.425.1,STRG.425.2,STRG.425.3,STRG.425.4,STRG.425.5,blat.proc3829887.chain_325,blat.proc3829887.chain_328,blat.proc3829887.chain_330,blat.proc3829887.chain_333,blat.proc3829887.chain_334	10
scaffold_11	retained_exon	11936634	11936714	-	asmbl_7019,asmbl_7022	none	STRG.14160.4,STRG.14160.5	2	STRG.14160.2,STRG.14160.3	2
scaffold_9	retained_intron	13278982	13279273	+	asmbl_54471	none	STRG.11615.1,blat.proc3829877.chain_402	2	STRG.11615.2	1
scaffold_18	alt_acceptor	9790608	9790609	+	asmbl_20918	none	STRG.21576.3	1	STRG.21576.1,STRG.21576.2,blat.proc3829881.chain_2541	3
scaffold_2	retained_intron	899248	899414	+	asmbl_24164,asmbl_24169	none	Trinity_GG_900_c0_g1_i3,Trinity_GG_900_c0_g1_i5,blat.proc3829871.chain_1640	3	STRG.1568.1,STRG.1568.2,Trinity_GG_900_c0_g1_i4,blat.proc3829871.chain_1642,blat.proc3829871.chain_1644	5
scaffold_10	alternate_exon	1706427	1708095	-	asmbl_2990	none	STRG.12028.2	1	STRG.12028.1	1
scaffold_3	ends_in_intron	15764337	15764337	-	asmbl_39394,asmbl_39395	none	Trinity_GG_19138_c0_g1_i2,blat.proc3829887.chain_3658,blat.proc3829887.chain_3659	3	STRG.3849.1	1
scaffold_22	alternate_exon	11475252	11476251	-	asmbl_30449,asmbl_30450	none	STRG.25475.1,STRG.25475.2	2	STRG.25475.3	1
scaffold_5	spliced_intron	9704092	9704702	-	asmbl_45678	none	STRG.6283.2	1	blat.proc3829889.chain_2370,blat.proc3829889.chain_2373	2
scaffold_27	retained_intron	512659	512738	-	asmbl_36647,asmbl_36648	none	STRG.28552.1,STRG.28552.2,Trinity_GG_32979_c0_g1_i2,blat.proc3829901.chain_1736	4	STRG.28552.3,blat.proc3829901.chain_1737	2
scaffold_24	alt_donor	6855375	6855376	-	asmbl_32982	none	STRG.26718.1,blat.proc3829901.chain_40	2	STRG.26718.2,blat.proc3829901.chain_41	2
scaffold_4	starts_in_intron	10954511	10954511	+	asmbl_43023	none	blat.proc3829873.chain_1190	1	STRG.4816.1,STRG.4816.2,blat.proc3829873.chain_1191,blat.proc3829873.chain_1192	4
scaffold_12	alt_acceptor	12454149	12454150	-	asmbl_8017	none	blat.proc3829893.chain_3525	1	STRG.15136.1,blat.proc3829893.chain_3526	2
scaffold_7	alt_donor	11300262	11300263	+	asmbl_51048	none	STRG.9266.1	1	STRG.9266.2,blat.proc3829875.chain_1708	2
scaffold_3	retained_exon	2668199	2668225	+	asmbl_39866,asmbl_39869	none	STRG.3038.1,STRG.3038.4	2	STRG.3038.2,STRG.3038.3	2
scaffold_11	alt_acceptor	3767796	3767797	-	asmbl_6556	none	STRG.13488.2	1	STRG.13488.1,STRG.13488.3,STRG.13488.4,blat.proc3829893.chain_1962	4
scaffold_6	alternate_exon	12993806	12998579	-	asmbl_48805	none	Trinity_GG_21547_c0_g1_i10,blat.proc3829891.chain_259	2	STRG.8061.6,STRG.8061.8,Trinity_GG_21547_c0_g1_i18,Trinity_GG_21547_c0_g1_i2,Trinity_GG_21547_c0_g1_i7,blat.proc3829891.chain_265,blat.proc3829891.chain_267,blat.proc3829891.chain_269	8
scaffold_6	alt_donor	2759888	2759889	+	asmbl_46720	none	STRG.7265.1,blat.proc3829873.chain_3399	2	STRG.7265.2	1
scaffold_14	alternate_exon	13221127	13221285	+	asmbl_12445,asmbl_12450	none	STRG.17600.3,STRG.17600.4,blat.proc3829879.chain_2203,blat.proc3829879.chain_2205	4	STRG.17600.5	1
scaffold_19	retained_intron	12491455	12492160	+	asmbl_22615	none	STRG.22568.3,blat.proc3829881.chain_3534	2	STRG.22568.2,STRG.22568.6,blat.proc3829881.chain_3535	3
scaffold_28	alternate_exon	5232621	5232900	-	asmbl_37586	none	Trinity_GG_33579_c0_g1_i11,blat.proc3829901.chain_2681	2	Trinity_GG_33579_c0_g1_i3,blat.proc3829901.chain_2686	2
scaffold_13	retained_intron	2340633	2341002	+	asmbl_10574,asmbl_10577,asmbl_10586	none	STRG.15543.10,STRG.15543.11,blat.proc3829879.chain_163,blat.proc3829879.chain_164	4	STRG.15543.3,STRG.15543.4,STRG.15543.6,STRG.15543.7,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_156,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161,blat.proc3829879.chain_162	13
scaffold_5	alt_acceptor	9579547	9579548	-	asmbl_45672	none	blat.proc3829889.chain_2352	1	STRG.6266.1	1
scaffold_1	alt_acceptor	14201383	14201384	+	asmbl_2322	none	STRG.1004.2,Trinity_GG_586_c0_g1_i2,Trinity_GG_586_c0_g1_i4,Trinity_GG_586_c0_g1_i9,blat.proc3829871.chain_1046,blat.proc3829871.chain_1047,blat.proc3829871.chain_1050	7	STRG.1004.1,Trinity_GG_586_c0_g1_i1,blat.proc3829871.chain_1048	3
scaffold_2	alt_acceptor	8874377	8874378	+	asmbl_24687,asmbl_24688	none	STRG.2139.2,STRG.2139.3,blat.proc3829871.chain_2261,blat.proc3829871.chain_2262	4	STRG.2139.4	1
scaffold_23	spliced_intron	10978895	10979242	+	asmbl_31185,asmbl_31186,asmbl_31191,asmbl_31192,asmbl_31193,asmbl_31194,asmbl_31196	none	STRG.26281.1,STRG.26281.2,Trinity_GG_14524_c0_g1_i13,Trinity_GG_14524_c0_g1_i9,blat.proc3829883.chain_3192,blat.proc3829883.chain_3194,blat.proc3829883.chain_3195,blat.proc3829883.chain_3199,blat.proc3829883.chain_3201,blat.proc3829883.chain_3203	10	Trinity_GG_14524_c0_g1_i12,Trinity_GG_14524_c0_g1_i8,blat.proc3829883.chain_3193,blat.proc3829883.chain_3197,blat.proc3829883.chain_3200	5
scaffold_28	alt_acceptor	3742838	3742839	-	asmbl_37489	none	blat.proc3829901.chain_2661	1	STRG.29558.1,STRG.29558.2,blat.proc3829901.chain_2662	3
scaffold_12	ends_in_intron	16175527	16175527	+	asmbl_9112	none	Trinity_GG_8421_c0_g1_i1,blat.proc3829877.chain_3743	2	STRG.15359.1,STRG.15359.2,STRG.15359.3,Trinity_GG_8421_c0_g1_i2,Trinity_GG_8421_c0_g1_i4,blat.proc3829877.chain_3742,blat.proc3829877.chain_3744	7
scaffold_17	alt_acceptor	10037011	10037012	-	asmbl_19273	none	Trinity_GG_28623_c0_g1_i2,blat.proc3829897.chain_1586	2	STRG.20608.2,STRG.20608.3,STRG.20608.5,STRG.20608.6,Trinity_GG_28623_c0_g1_i4,blat.proc3829897.chain_1587	6
scaffold_10	starts_in_intron	13771335	13771335	-	asmbl_3829	none	blat.proc3829893.chain_1491	1	STRG.12967.1,blat.proc3829893.chain_1492,blat.proc3829893.chain_1493	3
scaffold_22	alternate_exon	1706325	1706362	-	asmbl_29913	none	blat.proc3829899.chain_1869	1	STRG.24746.1,STRG.24746.2,Trinity_GG_30839_c0_g1_i1,Trinity_GG_30839_c0_g1_i3,blat.proc3829899.chain_1868,blat.proc3829899.chain_1870	6
scaffold_27	alt_donor	5927578	5927579	-	asmbl_36998	none	STRG.28980.1	1	STRG.28980.2,blat.proc3829901.chain_2163,blat.proc3829901.chain_2166	3
scaffold_5	skipped_exon	992901	994296	+	asmbl_43773	none	STRG.5645.1	1	STRG.5645.2,blat.proc3829873.chain_1820,blat.proc3829873.chain_1821	3
scaffold_3	alt_acceptor	10629026	10629027	+	asmbl_40236,asmbl_40238,asmbl_40241	none	STRG.3509.2,STRG.3509.3,blat.proc3829871.chain_3604,blat.proc3829871.chain_3605	4	blat.proc3829871.chain_3606	1
scaffold_2	alt_acceptor	2995469	2995470	-	asmbl_22974	none	STRG.1746.2	1	STRG.1746.1	1
scaffold_6	retained_intron	13573595	13573738	-	asmbl_48853	none	Trinity_GG_21620_c1_g1_i2,blat.proc3829891.chain_417	2	STRG.8093.2,STRG.8093.3,STRG.8093.4,blat.proc3829891.chain_414	4
scaffold_8	spliced_intron	7482867	7483073	-	asmbl_52903,asmbl_52905	none	STRG.10067.1,blat.proc3829891.chain_2150,blat.proc3829891.chain_2151	3	blat.proc3829891.chain_2152	1
scaffold_2	alt_donor	8055625	8055626	-	asmbl_23327,asmbl_23328	none	STRG.2095.2,blat.proc3829887.chain_2005,blat.proc3829887.chain_2009	3	STRG.2095.1,STRG.2095.4,blat.proc3829887.chain_2006,blat.proc3829887.chain_2008	4
scaffold_19	alt_acceptor	2247796	2247797	-	asmbl_21257	none	blat.proc3829897.chain_2713	1	blat.proc3829897.chain_2712	1
scaffold_21	alternate_exon	5374587	5374633	-	asmbl_27674	none	blat.proc3829899.chain_1076	1	STRG.24053.1,blat.proc3829899.chain_1075	2
scaffold_3	retained_exon	10276587	10276769	+	asmbl_40206,asmbl_40208	none	STRG.3461.1,blat.proc3829871.chain_3621,blat.proc3829871.chain_3623	3	STRG.3461.2,STRG.3461.4,blat.proc3829871.chain_3625	3
scaffold_22	retained_exon	7802612	7802713	-	asmbl_30191	none	STRG.25117.1,blat.proc3829899.chain_2203	2	blat.proc3829899.chain_2202	1
scaffold_1	retained_intron	14350452	14350634	-	asmbl_903	none	blat.proc3829887.chain_928	1	STRG.1030.1,STRG.1030.2,blat.proc3829887.chain_924,blat.proc3829887.chain_925,blat.proc3829887.chain_927	5
scaffold_5	spliced_intron	14731114	14731222	-	asmbl_45994	none	STRG.6667.1,blat.proc3829889.chain_2713	2	Trinity_GG_20753_c0_g1_i3,blat.proc3829889.chain_2714	2
scaffold_1	retained_intron	17725231	17725595	+	asmbl_2513,asmbl_2514,asmbl_2515	none	STRG.1239.2,Trinity_GG_733_c0_g1_i1,Trinity_GG_733_c0_g1_i3,blat.proc3829871.chain_1301,blat.proc3829871.chain_1302	5	STRG.1239.1,Trinity_GG_733_c0_g1_i2,blat.proc3829871.chain_1303	3
scaffold_6	spliced_intron	12628524	12628614	-	asmbl_48769,asmbl_48770,asmbl_48771,asmbl_48774	none	STRG.8013.1,STRG.8013.2,Trinity_GG_21546_c0_g1_i1,Trinity_GG_21546_c0_g1_i2,blat.proc3829891.chain_253,blat.proc3829891.chain_254,blat.proc3829891.chain_256,blat.proc3829891.chain_257	8	blat.proc3829891.chain_252,blat.proc3829891.chain_255	2
scaffold_5	spliced_intron	6933179	6933389	+	asmbl_44126	none	STRG.6099.1,blat.proc3829873.chain_2156	2	blat.proc3829873.chain_2154	1
scaffold_5	alt_donor	13087139	13087140	-	asmbl_45888,asmbl_45889	none	STRG.6534.2,blat.proc3829889.chain_2600	2	STRG.6534.1,blat.proc3829889.chain_2599	2
scaffold_28	alternate_exon	2161675	2163894	+	asmbl_38032	none	STRG.29364.1,blat.proc3829885.chain_2437,blat.proc3829885.chain_2461	3	STRG.29364.2	1
scaffold_6	retained_intron	579872	580943	+	asmbl_46620	none	STRG.7110.2,Trinity_GG_3925_c0_g1_i1,blat.proc3829873.chain_3267	3	STRG.7110.3	1
scaffold_13	retained_exon	1526310	1526387	-	asmbl_9377,asmbl_9378	none	STRG.15500.2,Trinity_GG_25702_c0_g1_i1,blat.proc3829895.chain_262	3	STRG.15500.1,STRG.15500.3,Trinity_GG_25702_c0_g1_i5,blat.proc3829895.chain_260	4
scaffold_3	retained_exon	18495876	18495899	-	asmbl_39575	none	STRG.4046.2	1	STRG.4046.1,blat.proc3829889.chain_75	2
scaffold_7	spliced_intron	10536228	10536307	-	asmbl_49940	none	STRG.9218.1	1	STRG.9218.2,blat.proc3829891.chain_1469	2
scaffold_21	retained_intron	405731	406300	-	asmbl_27338,asmbl_27339,asmbl_27342,asmbl_27343	none	STRG.23722.1,STRG.23722.2,STRG.23722.3,Trinity_GG_30229_c0_g1_i1,Trinity_GG_30229_c0_g1_i2,blat.proc3829899.chain_768,blat.proc3829899.chain_769,blat.proc3829899.chain_772,blat.proc3829899.chain_773	9	STRG.23722.4,Trinity_GG_30229_c0_g1_i7,Trinity_GG_30229_c0_g1_i9,blat.proc3829899.chain_770,blat.proc3829899.chain_771	5
scaffold_4	retained_exon	8771496	8771567	+	asmbl_42915	none	STRG.4690.5	1	STRG.4690.1,STRG.4690.2,STRG.4690.3,STRG.4690.4,Trinity_GG_2586_c0_g1_i2,blat.proc3829873.chain_1026,blat.proc3829873.chain_1027	7
scaffold_6	spliced_intron	5438307	5438405	-	asmbl_48363	none	STRG.7508.1,blat.proc3829889.chain_3579	2	blat.proc3829889.chain_3578	1
scaffold_13	alt_donor	13972028	13972029	+	asmbl_11396,asmbl_11398	none	blat.proc3829879.chain_1167,blat.proc3829879.chain_1169	2	STRG.16435.3,Trinity_GG_9032_c1_g1_i1,blat.proc3829879.chain_1168	3
scaffold_7	skipped_exon	1231311	1232985	+	asmbl_50468,asmbl_50470,asmbl_50478,asmbl_50480	none	STRG.8627.2,STRG.8627.3,STRG.8627.5,STRG.8627.6,Trinity_GG_4740_c0_g1_i15,blat.proc3829875.chain_1052	6	Trinity_GG_4740_c0_g1_i16,Trinity_GG_4740_c0_g1_i17,Trinity_GG_4740_c0_g1_i21,blat.proc3829875.chain_1042,blat.proc3829875.chain_1046,blat.proc3829875.chain_1047	6
scaffold_2	alt_acceptor	4243847	4243848	-	asmbl_23080,asmbl_23082	none	STRG.1859.2,STRG.1859.3,blat.proc3829887.chain_1734	3	STRG.1859.1,blat.proc3829887.chain_1733	2
scaffold_10	spliced_intron	4715798	4715969	-	asmbl_3224	none	STRG.12286.2	1	STRG.12286.3	1
scaffold_24	ends_in_intron	6444753	6444753	+	asmbl_32321	none	blat.proc3829883.chain_3598	1	STRG.26679.1,STRG.26679.2,STRG.26679.3,blat.proc3829883.chain_3599,blat.proc3829883.chain_3600,blat.proc3829883.chain_3601,blat.proc3829883.chain_3602	7
scaffold_8	alt_donor	12719858	12719859	-	asmbl_53223	none	STRG.10441.2,blat.proc3829891.chain_2550	2	STRG.10441.1	1
scaffold_5	retained_exon	236928	237070	-	asmbl_45153	none	STRG.5594.4	1	STRG.5594.3	1
scaffold_1	spliced_intron	9515894	9516029	-	asmbl_547,asmbl_549,asmbl_550	none	STRG.644.1,STRG.644.2,blat.proc3829887.chain_519,blat.proc3829887.chain_520	4	STRG.644.3,blat.proc3829887.chain_521	2
scaffold_7	starts_in_intron	12070118	12070118	+	asmbl_51095	none	blat.proc3829875.chain_1697	1	STRG.9302.1,blat.proc3829875.chain_1699	2
scaffold_9	alt_acceptor	13039805	13039806	+	asmbl_54461	none	STRG.11605.2	1	STRG.11605.1,blat.proc3829877.chain_398	2
scaffold_15	spliced_intron	1504460	1504632	-	asmbl_14969	none	blat.proc3829895.chain_2661	1	Trinity_GG_27097_c0_g1_i2,Trinity_GG_27097_c0_g1_i5,blat.proc3829895.chain_2659,blat.proc3829895.chain_2660	4
scaffold_25	retained_intron	3737855	3737965	-	asmbl_34136	none	blat.proc3829901.chain_616	1	STRG.27308.1,blat.proc3829901.chain_615	2
scaffold_3	alt_acceptor	17845778	17845779	+	asmbl_40664	none	STRG.4008.1,blat.proc3829873.chain_341	2	STRG.4008.2,STRG.4008.3,blat.proc3829873.chain_342	3
scaffold_12	retained_exon	10605600	10605683	+	asmbl_8910	none	STRG.15020.4,blat.proc3829877.chain_3508	2	STRG.15020.2,STRG.15020.3,blat.proc3829877.chain_3504,blat.proc3829877.chain_3509	4
scaffold_19	ends_in_intron	683342	683342	-	asmbl_21199	none	Trinity_GG_29199_c2_g1_i3,blat.proc3829897.chain_2617	2	STRG.21839.1,blat.proc3829897.chain_2618,blat.proc3829897.chain_2619	3
scaffold_23	starts_in_intron	5333810	5333810	+	asmbl_30865	none	Trinity_GG_14294_c0_g1_i2,blat.proc3829883.chain_2782	2	STRG.25891.1,blat.proc3829883.chain_2781	2
scaffold_5	alt_donor	18698533	18698534	-	asmbl_46230	none	STRG.6987.3	1	STRG.6987.1,STRG.6987.2	2
scaffold_12	skipped_exon	13030949	13031704	-	asmbl_8035,asmbl_8036	none	STRG.15173.1,STRG.15173.2	2	blat.proc3829893.chain_3570	1
scaffold_8	retained_intron	9122052	9122775	-	asmbl_52999	none	STRG.10160.4,Trinity_GG_22689_c0_g1_i1,blat.proc3829891.chain_2329	3	STRG.10160.1	1
scaffold_13	retained_exon	4243881	4243955	-	asmbl_9573,asmbl_9575,asmbl_9578	none	STRG.15737.2,STRG.15737.5,blat.proc3829895.chain_478,blat.proc3829895.chain_479,blat.proc3829895.chain_480	5	STRG.15737.1,STRG.15737.3,STRG.15737.4,blat.proc3829895.chain_477	4
scaffold_8	skipped_exon	9936478	9937030	-	asmbl_53077	none	STRG.10241.2	1	STRG.10241.1,blat.proc3829891.chain_2423,blat.proc3829891.chain_2424	3
scaffold_6	retained_exon	8586962	8587596	+	asmbl_47093,asmbl_47094	none	STRG.7733.1,Trinity_GG_4242_c0_g1_i1,blat.proc3829875.chain_97,blat.proc3829875.chain_99	4	STRG.7733.2	1
scaffold_16	alt_donor	4692208	4692209	-	asmbl_16242	none	STRG.19240.1,blat.proc3829897.chain_278	2	STRG.19240.2	1
scaffold_9	alt_donor	17611424	17611425	-	asmbl_55622,asmbl_55623,asmbl_55629	none	STRG.11843.1,STRG.11843.2,STRG.11843.3,blat.proc3829893.chain_183	4	STRG.11843.4,blat.proc3829893.chain_185	2
scaffold_23	skipped_exon	7278221	7279356	-	asmbl_31740	none	STRG.26034.1,blat.proc3829899.chain_3127	2	STRG.26034.2,STRG.26034.3	2
scaffold_11	retained_intron	14528202	14528402	+	asmbl_6065	none	STRG.14237.2	1	STRG.14237.1,blat.proc3829877.chain_2727	2
scaffold_7	alternate_exon	18771697	18771705	-	asmbl_50321	none	blat.proc3829891.chain_1877	1	blat.proc3829891.chain_1876	1
scaffold_1	retained_intron	14273795	14273994	+	asmbl_2348	none	blat.proc3829871.chain_1119	1	STRG.1020.1,STRG.1020.2,blat.proc3829871.chain_1117,blat.proc3829871.chain_1118	4
scaffold_12	ends_in_intron	4984863	4984863	+	asmbl_8593	none	blat.proc3829877.chain_3085	1	STRG.14656.1,STRG.14656.2,blat.proc3829877.chain_3080,blat.proc3829877.chain_3082,blat.proc3829877.chain_3086	5
scaffold_5	retained_intron	13022943	13023173	+	asmbl_44512	none	STRG.6522.2,blat.proc3829873.chain_2617	2	STRG.6522.3	1
scaffold_17	alt_donor	12223359	12223360	-	asmbl_19367	none	STRG.20749.1,blat.proc3829897.chain_1685	2	STRG.20749.2	1
scaffold_5	alt_donor	15044117	15044118	-	asmbl_46016,asmbl_46018,asmbl_46020,asmbl_46021	none	STRG.6692.2,STRG.6692.7,STRG.6692.8,STRG.6692.9	4	STRG.6692.5	1
scaffold_5	spliced_intron	15766542	15766727	+	asmbl_44677,asmbl_44680,asmbl_44682,asmbl_44684,asmbl_44685	none	STRG.6763.1,blat.proc3829873.chain_2874,blat.proc3829873.chain_2876,blat.proc3829873.chain_2877,blat.proc3829873.chain_2880,blat.proc3829873.chain_2882	6	Trinity_GG_3692_c0_g1_i6,blat.proc3829873.chain_2875,blat.proc3829873.chain_2879	3
scaffold_10	retained_exon	6018838	6018961	-	asmbl_3334	none	STRG.12424.2,blat.proc3829893.chain_895	2	blat.proc3829893.chain_893	1
scaffold_5	alt_acceptor	17216802	17216803	-	asmbl_46174	none	blat.proc3829889.chain_2915	1	STRG.6885.1,STRG.6885.2,blat.proc3829889.chain_2912,blat.proc3829889.chain_2913,blat.proc3829889.chain_2914	5
scaffold_26	retained_intron	9316596	9316754	+	asmbl_35737,asmbl_35738,asmbl_35740,asmbl_35742	none	blat.proc3829885.chain_1515,blat.proc3829885.chain_1520	2	STRG.28479.1,STRG.28479.2,STRG.28479.3,blat.proc3829885.chain_1518,blat.proc3829885.chain_1519	5
scaffold_4	alt_acceptor	8628230	8628231	+	asmbl_42902	none	STRG.4684.2,blat.proc3829873.chain_999	2	STRG.4684.1,blat.proc3829873.chain_998	2
scaffold_4	retained_intron	3237335	3237423	-	asmbl_41163,asmbl_41165	none	Trinity_GG_19386_c0_g1_i6,blat.proc3829889.chain_369,blat.proc3829889.chain_371	3	STRG.4247.3	1
scaffold_3	alt_acceptor	17117394	17117395	+	asmbl_40604	none	STRG.3957.7	1	STRG.3957.2,STRG.3957.3,STRG.3957.4,STRG.3957.6,blat.proc3829873.chain_317	5
scaffold_21	ends_in_intron	8187803	8187803	+	asmbl_28813	none	blat.proc3829883.chain_1441	1	STRG.24340.1	1
scaffold_1	retained_intron	6297508	6297670	-	asmbl_356	none	blat.proc3829887.chain_305	1	STRG.424.1,STRG.424.2,STRG.424.3,STRG.424.4,STRG.424.5,blat.proc3829887.chain_303,blat.proc3829887.chain_304,blat.proc3829887.chain_306,blat.proc3829887.chain_307	9
scaffold_27	alternate_exon	632279	632338	+	asmbl_35926	none	STRG.28564.2	1	STRG.28564.1,Trinity_GG_15812_c1_g1_i1,blat.proc3829885.chain_1609	3
scaffold_3	spliced_intron	17780927	17781032	+	asmbl_40654	none	STRG.3993.2	1	STRG.3993.1,Trinity_GG_2236_c0_g1_i1,blat.proc3829873.chain_383	3
scaffold_19	alternate_exon	5615804	5615884	-	asmbl_21383	none	STRG.22114.2	1	STRG.22114.1,blat.proc3829897.chain_2883	2
scaffold_4	spliced_intron	753564	753737	-	asmbl_41090	none	STRG.4147.2	1	STRG.4147.1,Trinity_GG_19284_c0_g1_i1,blat.proc3829889.chain_190	3
scaffold_26	alt_donor	5482972	5482973	+	asmbl_35520,asmbl_35523	none	STRG.28234.2,STRG.28234.4	2	STRG.28234.1,STRG.28234.3	2
scaffold_23	ends_in_intron	810768	810768	-	asmbl_31327	none	Trinity_GG_31307_c0_g1_i9,blat.proc3829899.chain_2675	2	STRG.25556.1	1
scaffold_28	starts_in_intron	7256180	7256180	+	asmbl_38353	none	Trinity_GG_16499_c0_g1_i2,blat.proc3829885.chain_2881	2	STRG.29771.1,STRG.29771.2,STRG.29771.3,STRG.29771.4,Trinity_GG_16499_c0_g1_i1,Trinity_GG_16499_c0_g1_i3,blat.proc3829885.chain_2878,blat.proc3829885.chain_2880	8
scaffold_9	starts_in_intron	12778720	12778720	-	asmbl_55364,asmbl_55368	none	STRG.11584.1,blat.proc3829891.chain_3668,blat.proc3829891.chain_3669	3	STRG.11584.2	1
scaffold_8	retained_intron	7804828	7805076	-	asmbl_52917	none	blat.proc3829891.chain_2144	1	STRG.10090.1,blat.proc3829891.chain_2143,blat.proc3829891.chain_2145,blat.proc3829891.chain_2147	4
scaffold_4	starts_in_intron	17031293	17031293	+	asmbl_43364	none	blat.proc3829873.chain_1534	1	STRG.5305.2,STRG.5305.3,blat.proc3829873.chain_1531	3
scaffold_19	skipped_exon	12451053	12451773	-	asmbl_21698	none	STRG.22565.2	1	STRG.22565.1	1
scaffold_7	starts_in_intron	8195225	8195225	+	asmbl_50851	none	Trinity_GG_4945_c0_g1_i3,blat.proc3829875.chain_1385	2	STRG.9047.1,STRG.9047.2,blat.proc3829875.chain_1387,blat.proc3829875.chain_1388	4
scaffold_3	alt_acceptor	17530909	17530910	+	asmbl_40649	none	STRG.3982.2	1	STRG.3982.1,blat.proc3829873.chain_337	2
scaffold_18	alt_donor	9682744	9682745	-	asmbl_20112	none	STRG.21570.1	1	STRG.21570.2,STRG.21570.3,blat.proc3829897.chain_2417	3
scaffold_11	starts_in_intron	8928079	8928079	-	asmbl_6878	none	Trinity_GG_24777_c0_g1_i1,blat.proc3829893.chain_2324	2	STRG.13904.1,Trinity_GG_24777_c0_g1_i2,blat.proc3829893.chain_2325	3
scaffold_2	alternate_exon	19280343	19280611	-	asmbl_23873	none	STRG.2793.3,blat.proc3829887.chain_2627	2	STRG.2793.1	1
scaffold_13	alt_donor	7198085	7198086	-	asmbl_9820,asmbl_9827	none	STRG.16001.1,blat.proc3829895.chain_839,blat.proc3829895.chain_842	3	STRG.16001.3,blat.proc3829895.chain_843	2
scaffold_20	alt_acceptor	6127903	6127904	-	asmbl_26733	none	STRG.23196.1,blat.proc3829899.chain_209	2	STRG.23196.2	1
scaffold_11	starts_in_intron	5505547	5505547	-	asmbl_6645	none	blat.proc3829893.chain_2076	1	STRG.13609.1,blat.proc3829893.chain_2077	2
scaffold_13	ends_in_intron	11599898	11599898	+	asmbl_11270	none	STRG.16295.4,blat.proc3829879.chain_1022	2	STRG.16295.2,blat.proc3829879.chain_1015,blat.proc3829879.chain_1020,blat.proc3829879.chain_1023	4
scaffold_4	alt_donor	18065529	18065530	-	asmbl_42093	none	STRG.5400.1,blat.proc3829889.chain_1477	2	STRG.5400.2,blat.proc3829889.chain_1478	2
scaffold_26	alt_acceptor	6722043	6722044	+	asmbl_35633	none	STRG.28354.1,blat.proc3829885.chain_1286	2	STRG.28354.3	1
scaffold_11	alt_acceptor	8426462	8426463	+	asmbl_5738,asmbl_5739	none	Trinity_GG_7631_c0_g1_i2,Trinity_GG_7631_c0_g1_i3,blat.proc3829877.chain_2325,blat.proc3829877.chain_2327	4	STRG.13849.1,STRG.13849.2	2
scaffold_16	alternate_exon	6094643	6100648	-	asmbl_16314	none	blat.proc3829897.chain_384	1	blat.proc3829897.chain_381	1
scaffold_4	starts_in_intron	5653495	5653495	-	asmbl_41358,asmbl_41365,asmbl_41366	none	blat.proc3829889.chain_604,blat.proc3829889.chain_608,blat.proc3829889.chain_611	3	STRG.4469.1,STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_606,blat.proc3829889.chain_612,blat.proc3829889.chain_613	8
scaffold_27	alt_acceptor	381931	381932	-	asmbl_36635,asmbl_36636,asmbl_36637	none	STRG.28547.2,STRG.28547.4,STRG.28547.5,blat.proc3829901.chain_1684,blat.proc3829901.chain_1685,blat.proc3829901.chain_1686	6	STRG.28547.1,blat.proc3829901.chain_1687	2
scaffold_15	retained_exon	13813532	13813573	-	asmbl_15692	none	STRG.18806.2	1	STRG.18806.1,Trinity_GG_27567_c0_g1_i1,blat.proc3829895.chain_3548	3
scaffold_17	alt_acceptor	7469885	7469886	+	asmbl_18037	none	STRG.20384.1,blat.proc3829881.chain_1150	2	STRG.20384.2	1
scaffold_13	retained_intron	1238377	1238489	+	asmbl_10524	none	blat.proc3829879.chain_209	1	STRG.15478.7	1
scaffold_11	retained_intron	15233086	15233289	+	asmbl_6091	none	blat.proc3829877.chain_2763	1	Trinity_GG_7869_c0_g1_i1,blat.proc3829877.chain_2761	2
scaffold_9	alt_donor	7032375	7032376	+	asmbl_54112	none	STRG.11207.1,blat.proc3829875.chain_3720	2	blat.proc3829875.chain_3719	1
scaffold_23	retained_exon	7939183	7940157	-	asmbl_31781	none	STRG.26079.3,Trinity_GG_31604_c2_g1_i1,blat.proc3829899.chain_3196,blat.proc3829899.chain_3197,blat.proc3829899.chain_3198	5	STRG.26079.2	1
scaffold_13	alt_donor	6950694	6950695	-	asmbl_9777,asmbl_9779,asmbl_9780	none	STRG.15968.2,STRG.15968.4,STRG.15968.5	3	STRG.15968.3	1
scaffold_6	alt_donor	13918577	13918578	-	asmbl_48897	none	STRG.8132.4	1	STRG.8132.5,STRG.8132.6,Trinity_GG_21636_c1_g1_i2,blat.proc3829891.chain_441	4
scaffold_4	alt_donor	19539874	19539875	-	asmbl_42202	none	blat.proc3829889.chain_1601	1	STRG.5538.3	1
scaffold_7	skipped_exon	4873474	4874735	+	asmbl_50631,asmbl_50634	none	STRG.8823.1,blat.proc3829875.chain_1233,blat.proc3829875.chain_1234	3	Trinity_GG_4853_c0_g1_i3,blat.proc3829875.chain_1235	2
scaffold_4	ends_in_intron	14626491	14626491	+	asmbl_43237	none	blat.proc3829873.chain_1421	1	STRG.5089.1,STRG.5089.2,blat.proc3829873.chain_1420	3
scaffold_15	ends_in_intron	5824379	5824379	-	asmbl_15250	none	blat.proc3829895.chain_2946	1	STRG.18250.1,Trinity_GG_27247_c0_g1_i3,blat.proc3829895.chain_2944,blat.proc3829895.chain_2945	4
scaffold_25	alt_acceptor	4588448	4588449	-	asmbl_34195,asmbl_34196	none	STRG.27378.1,STRG.27378.3,blat.proc3829901.chain_650,blat.proc3829901.chain_651	4	STRG.27378.2	1
scaffold_2	retained_exon	10394585	10394676	+	asmbl_24740	none	STRG.2210.2	1	STRG.2210.1	1
scaffold_16	ends_in_intron	5797232	5797232	+	asmbl_17022	none	STRG.19311.2,Trinity_GG_10534_c0_g1_i3,blat.proc3829881.chain_96	3	STRG.19311.1,STRG.19311.3,Trinity_GG_10534_c0_g1_i1,Trinity_GG_10534_c0_g1_i2,Trinity_GG_10534_c0_g1_i4,blat.proc3829881.chain_94,blat.proc3829881.chain_95,blat.proc3829881.chain_97	8
scaffold_12	starts_in_intron	11794955	11794955	-	asmbl_7964	none	blat.proc3829893.chain_3493	1	STRG.15081.1,blat.proc3829893.chain_3494	2
scaffold_28	spliced_intron	7305588	7306228	-	asmbl_37721	none	STRG.29781.3	1	STRG.29781.1,STRG.29781.2	2
scaffold_1	retained_intron	12953870	12953998	-	asmbl_790,asmbl_791	none	STRG.920.1,STRG.920.2,blat.proc3829887.chain_814,blat.proc3829887.chain_815	4	STRG.920.3,blat.proc3829887.chain_816	2
scaffold_4	spliced_intron	16131996	16133361	-	asmbl_41890,asmbl_41893	none	STRG.5182.2,STRG.5182.3	2	STRG.5182.1,Trinity_GG_19903_c0_g1_i3,Trinity_GG_19903_c1_g1_i1,Trinity_GG_19903_c2_g1_i1,blat.proc3829889.chain_1225,blat.proc3829889.chain_1226	6
scaffold_22	alternate_exon	8204659	8204757	-	asmbl_30229	none	STRG.25155.1	1	STRG.25155.2	1
scaffold_58	spliced_intron	14079	14281	-	asmbl_46563	none	STRG.30063.1,blat.proc3829901.chain_3167	2	blat.proc3829901.chain_3166	1
scaffold_14	spliced_intron	2919342	2919421	-	asmbl_12971	none	STRG.16879.1,blat.proc3829895.chain_1604	2	blat.proc3829895.chain_1605	1
scaffold_22	spliced_intron	11543991	11544062	+	asmbl_29697	none	STRG.25485.3	1	STRG.25485.2,blat.proc3829883.chain_2362	2
scaffold_11	starts_in_intron	27411	27411	+	asmbl_5207	none	blat.proc3829877.chain_1734	1	STRG.13215.1,blat.proc3829877.chain_1735	2
scaffold_12	alternate_exon	15434607	15437769	-	asmbl_8223,asmbl_8224	none	STRG.15336.1,STRG.15336.2,blat.proc3829895.chain_75,blat.proc3829895.chain_77	4	Trinity_GG_25614_c0_g1_i2,blat.proc3829895.chain_74	2
scaffold_6	ends_in_intron	18837445	18837445	+	asmbl_47803	none	STRG.8547.6	1	STRG.8547.1,STRG.8547.2,STRG.8547.3,STRG.8547.4,STRG.8547.5,Trinity_GG_4669_c0_g1_i6,blat.proc3829875.chain_887,blat.proc3829875.chain_888,blat.proc3829875.chain_889,blat.proc3829875.chain_890	10
scaffold_25	alt_acceptor	5567282	5567283	-	asmbl_34242	none	STRG.27439.1,Trinity_GG_32384_c0_g1_i2,blat.proc3829901.chain_738	3	STRG.27439.2,Trinity_GG_32384_c0_g1_i1,blat.proc3829901.chain_739	3
scaffold_1	retained_intron	12915848	12915960	+	asmbl_2259,asmbl_2260	none	STRG.919.2,blat.proc3829871.chain_974	2	STRG.919.1,blat.proc3829871.chain_976	2
scaffold_13	ends_in_intron	12088923	12088923	+	asmbl_11312	none	Trinity_GG_8966_c0_g1_i4,blat.proc3829879.chain_1059	2	STRG.16333.1,blat.proc3829879.chain_1058	2
scaffold_1	alt_donor	12754530	12754531	+	asmbl_2238	none	STRG.893.2	1	STRG.893.3,Trinity_GG_528_c0_g1_i1,blat.proc3829871.chain_951	3
scaffold_21	alt_acceptor	7601121	7601122	+	asmbl_28769	none	STRG.24282.1,blat.proc3829883.chain_1430	2	STRG.24282.2,blat.proc3829883.chain_1429	2
scaffold_10	starts_in_intron	8560677	8560677	-	asmbl_3514	none	blat.proc3829893.chain_1110	1	STRG.12606.1,blat.proc3829893.chain_1111	2
scaffold_27	alternate_exon	1971563	1972144	-	asmbl_36748	none	STRG.28657.2	1	STRG.28657.3	1
scaffold_13	spliced_intron	6396106	6396423	+	asmbl_10910	none	Trinity_GG_8718_c0_g1_i8,blat.proc3829879.chain_556	2	STRG.15914.2,Trinity_GG_8718_c0_g1_i4,Trinity_GG_8718_c0_g1_i6,blat.proc3829879.chain_550,blat.proc3829879.chain_553	5
scaffold_18	retained_exon	2087503	2087627	-	asmbl_19742	none	STRG.21091.1,blat.proc3829897.chain_2002	2	STRG.21091.2	1
scaffold_3	starts_in_intron	12901643	12901643	-	asmbl_39192	none	blat.proc3829887.chain_3450	1	STRG.3674.1,STRG.3674.2,blat.proc3829887.chain_3451,blat.proc3829887.chain_3452	4
scaffold_10	starts_in_intron	17690363	17690363	+	asmbl_5068	none	Trinity_GG_7219_c3_g1_i1,blat.proc3829877.chain_1650	2	STRG.13211.1,STRG.13211.2,blat.proc3829877.chain_1647	3
scaffold_2	spliced_intron	8322079	8322426	+	asmbl_24671,asmbl_24672	none	STRG.2126.1,STRG.2126.2,blat.proc3829871.chain_2265,blat.proc3829871.chain_2266	4	Trinity_GG_1216_c0_g1_i3,blat.proc3829871.chain_2267	2
scaffold_15	starts_in_intron	8797948	8797948	-	asmbl_15376	none	blat.proc3829895.chain_3202	1	STRG.18413.1,blat.proc3829895.chain_3203	2
scaffold_19	alt_donor	13155524	13155525	-	asmbl_21822	none	STRG.22626.1,blat.proc3829897.chain_3409	2	STRG.22626.2,blat.proc3829897.chain_3410	2
scaffold_5	retained_exon	15547270	15547539	-	asmbl_46080	none	STRG.6737.3	1	STRG.6737.1,STRG.6737.2,blat.proc3829889.chain_2776	3
scaffold_3	alternate_exon	11979984	11980140	+	asmbl_40339	none	Trinity_GG_2035_c0_g1_i3,blat.proc3829873.chain_22	2	STRG.3621.1,STRG.3621.2,Trinity_GG_2035_c0_g1_i1,Trinity_GG_2035_c0_g1_i2,blat.proc3829873.chain_20,blat.proc3829873.chain_21	6
scaffold_4	spliced_intron	9965598	9965735	-	asmbl_41572	none	blat.proc3829889.chain_824	1	STRG.4758.1,blat.proc3829889.chain_822	2
scaffold_9	ends_in_intron	17710018	17710018	-	asmbl_55635	none	Trinity_GG_23573_c0_g1_i1,blat.proc3829893.chain_247	2	STRG.11844.1	1
scaffold_8	starts_in_intron	4852653	4852653	+	asmbl_51847,asmbl_51848	none	Trinity_GG_5535_c0_g1_i1,Trinity_GG_5535_c0_g1_i4,blat.proc3829875.chain_2450,blat.proc3829875.chain_2451	4	STRG.9942.1,STRG.9942.2,blat.proc3829875.chain_2454,blat.proc3829875.chain_2455,blat.proc3829875.chain_2456	5
scaffold_18	alternate_exon	4561601	4561669	-	asmbl_19848	none	STRG.21234.1	1	STRG.21234.2	1
scaffold_5	alternate_exon	12396642	12397582	+	asmbl_44470	none	STRG.6478.1,blat.proc3829873.chain_2632	2	blat.proc3829873.chain_2631	1
scaffold_2	skipped_exon	15686520	15687128	+	asmbl_25092	none	STRG.2521.1,Trinity_GG_1432_c0_g1_i1	2	STRG.2521.2,STRG.2521.3,Trinity_GG_1432_c0_g1_i2,Trinity_GG_1432_c0_g1_i4,blat.proc3829871.chain_2712,blat.proc3829871.chain_2713,blat.proc3829871.chain_2714	7
scaffold_1	spliced_intron	11068679	11068764	+	asmbl_2045	none	STRG.723.2	1	STRG.723.1,Trinity_GG_431_c0_g1_i3,blat.proc3829871.chain_745	3
scaffold_18	alt_donor	4705955	4705956	+	asmbl_20577	none	blat.proc3829881.chain_2143	1	STRG.21248.1,blat.proc3829881.chain_2144	2
scaffold_1	retained_intron	6323837	6323948	+	asmbl_1820	none	blat.proc3829871.chain_478	1	STRG.426.1,blat.proc3829871.chain_477,blat.proc3829871.chain_479	3
scaffold_3	alternate_exon	6176392	6177852	-	asmbl_38856,asmbl_38857,asmbl_38859	none	blat.proc3829887.chain_2942,blat.proc3829887.chain_2944,blat.proc3829887.chain_2945	3	blat.proc3829887.chain_2941,blat.proc3829887.chain_2946	2
scaffold_7	spliced_intron	12449111	12449542	-	asmbl_50036,asmbl_50037,asmbl_50039,asmbl_50042,asmbl_50044	none	STRG.9342.1,STRG.9342.2,Trinity_GG_22282_c1_g1_i12,Trinity_GG_22282_c1_g1_i7,blat.proc3829891.chain_1607,blat.proc3829891.chain_1608,blat.proc3829891.chain_1610,blat.proc3829891.chain_1611	8	blat.proc3829891.chain_1604,blat.proc3829891.chain_1606	2
scaffold_2	starts_in_intron	6464934	6464934	+	asmbl_24494	none	STRG.2012.2,Trinity_GG_1137_c1_g1_i1,blat.proc3829871.chain_2076	3	STRG.2012.1,blat.proc3829871.chain_2074,blat.proc3829871.chain_2075	3
scaffold_14	starts_in_intron	403411	403411	+	asmbl_11724	none	STRG.16722.7	1	STRG.16722.1,STRG.16722.2,STRG.16722.3,STRG.16722.4,STRG.16722.5,STRG.16722.6,blat.proc3829879.chain_1463,blat.proc3829879.chain_1464,blat.proc3829879.chain_1467,blat.proc3829879.chain_1470,blat.proc3829879.chain_1473	11
scaffold_6	alternate_exon	4986889	4986951	+	asmbl_46843,asmbl_46844	none	STRG.7466.1,STRG.7466.2,blat.proc3829873.chain_3544,blat.proc3829873.chain_3545	4	STRG.7466.3	1
scaffold_21	alt_donor	2654854	2654855	-	asmbl_27509,asmbl_27511	none	STRG.23889.1,Trinity_GG_30293_c0_g1_i10,Trinity_GG_30293_c0_g1_i6,blat.proc3829899.chain_910,blat.proc3829899.chain_915	5	STRG.23889.4	1
scaffold_15	alternate_exon	1961511	1961770	+	asmbl_13980	none	STRG.17971.3	1	STRG.17971.1	1
scaffold_28	starts_in_intron	9419393	9419393	-	asmbl_37840	none	blat.proc3829901.chain_3073	1	STRG.29951.1,blat.proc3829901.chain_3072	2
scaffold_5	alternate_exon	9150064	9150134	+	asmbl_44279	none	STRG.6243.2,blat.proc3829873.chain_2395	2	STRG.6243.1,blat.proc3829873.chain_2394	2
scaffold_13	ends_in_intron	3428644	3428644	+	asmbl_10672	none	Trinity_GG_8571_c0_g1_i2,blat.proc3829879.chain_295	2	STRG.15635.1,Trinity_GG_8571_c0_g1_i1,blat.proc3829879.chain_294,blat.proc3829895.chain_385	4
scaffold_17	starts_in_intron	2276972	2276972	-	asmbl_18785	none	Trinity_GG_28229_c0_g1_i1,blat.proc3829897.chain_942	2	STRG.20005.2,blat.proc3829897.chain_943	2
scaffold_24	skipped_exon	9953645	9954584	-	asmbl_33152,asmbl_33153	none	STRG.26947.3,STRG.26947.4	2	STRG.26947.1,STRG.26947.8,blat.proc3829901.chain_245,blat.proc3829901.chain_248,blat.proc3829901.chain_249,blat.proc3829901.chain_250	6
scaffold_10	alt_donor	4159532	4159533	-	asmbl_3184	none	blat.proc3829893.chain_686	1	STRG.12242.1,blat.proc3829893.chain_685	2
scaffold_25	alt_acceptor	3672987	3672988	+	asmbl_33443	none	STRG.27293.2	1	STRG.27293.1,Trinity_GG_15048_c0_g1_i1,blat.proc3829885.chain_320	3
scaffold_2	alt_acceptor	15490648	15490649	+	asmbl_25076,asmbl_25077,asmbl_25079	none	STRG.2499.1,STRG.2499.2,STRG.2499.4,blat.proc3829871.chain_2698,blat.proc3829871.chain_2700	5	STRG.2499.3,blat.proc3829871.chain_2699	2
scaffold_20	retained_intron	11924753	11925165	+	asmbl_26254	none	STRG.23680.1,blat.proc3829883.chain_819	2	STRG.23680.4	1
scaffold_3	ends_in_intron	3240725	3240725	+	asmbl_39896	none	blat.proc3829871.chain_3311	1	STRG.3087.1,STRG.3087.3,blat.proc3829871.chain_3310	3
scaffold_13	spliced_intron	3735623	3735769	+	asmbl_10711,asmbl_10712,asmbl_10713,asmbl_10714,asmbl_10716,asmbl_10717	none	STRG.15686.1,STRG.15686.2,STRG.15686.3,Trinity_GG_8631_c0_g1_i4,Trinity_GG_8631_c0_g1_i8,blat.proc3829879.chain_389,blat.proc3829879.chain_390,blat.proc3829879.chain_393,blat.proc3829879.chain_394,blat.proc3829879.chain_396	10	Trinity_GG_8631_c0_g1_i6,blat.proc3829879.chain_395	2
scaffold_11	skipped_exon	11936610	11936927	-	asmbl_7023	none	STRG.14160.3	1	STRG.14160.4,STRG.14160.5	2
scaffold_8	retained_exon	9882143	9882528	+	asmbl_52115	none	STRG.10228.1,blat.proc3829875.chain_2738	2	STRG.10228.2,blat.proc3829875.chain_2739	2
scaffold_21	skipped_exon	4662859	4664245	-	asmbl_27608	none	STRG.24000.1	1	STRG.24000.2	1
scaffold_12	alternate_exon	8950250	8950584	-	asmbl_7759	none	STRG.14886.1,blat.proc3829893.chain_3270	2	STRG.14886.2	1
scaffold_8	retained_intron	5216070	5216193	-	asmbl_52818	none	STRG.9958.2,Trinity_GG_22578_c0_g1_i1,blat.proc3829891.chain_2132	3	STRG.9958.1,Trinity_GG_22578_c0_g1_i2,blat.proc3829891.chain_2131	3
scaffold_22	alt_acceptor	7345728	7345729	+	asmbl_29467	none	STRG.25052.2	1	STRG.25052.1,Trinity_GG_13838_c1_g1_i2,blat.proc3829883.chain_2069	3
scaffold_25	retained_intron	185266	185787	-	asmbl_33947	none	Trinity_GG_32148_c0_g1_i1,blat.proc3829901.chain_350	2	STRG.27031.1,blat.proc3829901.chain_349	2
scaffold_12	alt_acceptor	5509944	5509945	+	asmbl_8617,asmbl_8618	none	STRG.14689.1,blat.proc3829877.chain_3173,blat.proc3829877.chain_3174	3	STRG.14689.2,STRG.14689.3	2
scaffold_15	alternate_exon	670294	670516	-	asmbl_14954	none	blat.proc3829895.chain_2554	1	STRG.17917.1,blat.proc3829895.chain_2552,blat.proc3829895.chain_2555	3
scaffold_14	starts_in_intron	11944917	11944917	+	asmbl_12390	none	Trinity_GG_9639_c0_g1_i1,blat.proc3829879.chain_2227	2	STRG.17520.1,Trinity_GG_9639_c0_g1_i2,blat.proc3829879.chain_2226	3
scaffold_8	retained_intron	1801739	1801810	-	asmbl_52700	none	blat.proc3829875.chain_2240	1	STRG.9770.2	1
scaffold_7	alternate_exon	12369558	12369685	+	asmbl_51132	none	blat.proc3829875.chain_1804	1	STRG.9325.1,blat.proc3829875.chain_1799	2
scaffold_21	alternate_exon	9832529	9836478	-	asmbl_27991	none	STRG.24425.1	1	STRG.24425.2	1
scaffold_1	alternate_exon	13885120	13885235	-	asmbl_857,asmbl_860	none	STRG.993.1,STRG.993.5,blat.proc3829887.chain_867	3	STRG.993.3,blat.proc3829887.chain_866	2
scaffold_3	spliced_intron	4304531	4304555	-	asmbl_38755	none	STRG.3128.2	1	STRG.3128.1	1
scaffold_18	retained_exon	5985192	5985311	+	asmbl_20674,asmbl_20680	none	blat.proc3829881.chain_2205,blat.proc3829881.chain_2211,blat.proc3829881.chain_2212	3	blat.proc3829881.chain_2206,blat.proc3829881.chain_2207,blat.proc3829881.chain_2208,blat.proc3829881.chain_2209	4
scaffold_19	alt_acceptor	1111288	1111289	-	asmbl_21231	none	STRG.21887.4	1	STRG.21887.1	1
scaffold_13	starts_in_intron	278606	278606	+	asmbl_10440,asmbl_10443	none	STRG.15416.4,Trinity_GG_8495_c0_g1_i6,blat.proc3829879.chain_123	3	STRG.15416.1,STRG.15416.2,STRG.15416.3,blat.proc3829879.chain_124,blat.proc3829879.chain_125,blat.proc3829879.chain_126,blat.proc3829879.chain_127	7
scaffold_7	skipped_exon	12451982	12453235	-	asmbl_50043	none	STRG.9342.4	1	STRG.9342.1,STRG.9342.2,Trinity_GG_22282_c1_g1_i7,Trinity_GG_22282_c1_g1_i9,blat.proc3829891.chain_1604,blat.proc3829891.chain_1605,blat.proc3829891.chain_1606,blat.proc3829891.chain_1607,blat.proc3829891.chain_1608,blat.proc3829891.chain_1614	10
scaffold_2	spliced_intron	4687220	4687254	-	asmbl_23114,asmbl_23116	none	STRG.1889.2,STRG.1889.3	2	STRG.1889.1,Trinity_GG_18057_c0_g1_i1,blat.proc3829887.chain_1721	3
scaffold_8	retained_intron	11279257	11280686	-	asmbl_53143,asmbl_53144	none	STRG.10339.1,STRG.10339.4,blat.proc3829891.chain_2439	3	STRG.10339.2,STRG.10339.3,blat.proc3829891.chain_2438,blat.proc3829891.chain_2440	4
scaffold_4	spliced_intron	8822899	8822991	-	asmbl_41531	none	STRG.4697.2,blat.proc3829889.chain_745	2	STRG.4697.1,blat.proc3829889.chain_743	2
scaffold_20	alt_acceptor	9656271	9656272	+	asmbl_26036	none	STRG.23495.2	1	STRG.23495.1	1
scaffold_14	ends_in_intron	12832547	12832547	+	asmbl_12433	none	blat.proc3829879.chain_2261	1	STRG.17584.1,blat.proc3829879.chain_2262	2
scaffold_25	alt_acceptor	7220043	7220044	-	asmbl_34362	none	STRG.27562.1,blat.proc3829901.chain_878,blat.proc3829901.chain_879	3	STRG.27562.2	1
scaffold_26	ends_in_intron	9849941	9849941	+	asmbl_35802	none	blat.proc3829885.chain_1570	1	STRG.28526.1,STRG.28526.2,STRG.28526.3,STRG.28526.5,blat.proc3829885.chain_1556,blat.proc3829885.chain_1557,blat.proc3829885.chain_1558,blat.proc3829885.chain_1559,blat.proc3829885.chain_1560,blat.proc3829885.chain_1561,blat.proc3829885.chain_1562,blat.proc3829885.chain_1563,blat.proc3829885.chain_1564,blat.proc3829885.chain_1565,blat.proc3829885.chain_1566,blat.proc3829885.chain_1567	16
scaffold_13	retained_intron	5575373	5575506	-	asmbl_9657,asmbl_9658	none	STRG.15843.1,STRG.15843.2,blat.proc3829895.chain_584,blat.proc3829895.chain_586	4	STRG.15843.3	1
scaffold_24	retained_intron	879746	879842	+	asmbl_32061	none	STRG.26351.1,blat.proc3829883.chain_3323	2	STRG.26351.2	1
scaffold_9	starts_in_intron	9636741	9636741	-	asmbl_55189	none	Trinity_GG_23294_c0_g2_i3,blat.proc3829891.chain_3496	2	STRG.11324.1,Trinity_GG_23294_c0_g2_i1,blat.proc3829891.chain_3498	3
scaffold_17	starts_in_intron	675388	675388	+	asmbl_17685	none	blat.proc3829881.chain_746	1	STRG.19900.2	1
scaffold_6	spliced_intron	11489986	11490454	+	asmbl_47267,asmbl_47269,asmbl_47270	none	STRG.7936.3,STRG.7936.4,blat.proc3829875.chain_299	3	STRG.7936.1,STRG.7936.2,blat.proc3829875.chain_300,blat.proc3829875.chain_301,blat.proc3829875.chain_302,blat.proc3829875.chain_303,blat.proc3829875.chain_304	7
scaffold_4	spliced_intron	4121525	4121687	-	asmbl_41237	none	STRG.4323.1,blat.proc3829889.chain_476	2	STRG.4323.2,Trinity_GG_19456_c0_g1_i2,Trinity_GG_19456_c0_g1_i5,blat.proc3829889.chain_474,blat.proc3829889.chain_475	5
scaffold_19	alternate_exon	13191473	13215098	-	asmbl_21827,asmbl_21839,asmbl_21840,asmbl_21841,asmbl_21842,asmbl_21843,asmbl_21845	none	STRG.22682.1,blat.proc3829897.chain_3360,blat.proc3829897.chain_3361,blat.proc3829897.chain_3362,blat.proc3829897.chain_3363,blat.proc3829897.chain_3364,blat.proc3829897.chain_3368,blat.proc3829897.chain_3370	8	Trinity_GG_29598_c1_g1_i2,blat.proc3829897.chain_3365	2
scaffold_4	retained_intron	1969732	1969832	+	asmbl_42473,asmbl_42475	none	STRG.4210.1,blat.proc3829873.chain_571	2	STRG.4210.2,blat.proc3829873.chain_572	2
scaffold_8	retained_intron	4860984	4861241	-	asmbl_52805	none	blat.proc3829891.chain_2116	1	STRG.9940.1,blat.proc3829891.chain_2117,blat.proc3829891.chain_2118	3
scaffold_21	alternate_exon	2602801	2602849	+	asmbl_28431	none	blat.proc3829883.chain_1034	1	STRG.23878.1,blat.proc3829883.chain_1033	2
scaffold_13	alt_acceptor	9244900	9244901	+	asmbl_11169	none	STRG.16173.3	1	STRG.16173.1,STRG.16173.2,blat.proc3829879.chain_843,blat.proc3829879.chain_844	4
scaffold_9	alt_donor	3413856	3413857	-	asmbl_54867	none	blat.proc3829891.chain_3124	1	STRG.10946.1,STRG.10946.3,blat.proc3829891.chain_3122	3
scaffold_9	starts_in_intron	11733087	11733087	+	asmbl_54352	none	Trinity_GG_6398_c0_g1_i1,blat.proc3829877.chain_244	2	STRG.11472.1,blat.proc3829877.chain_245	2
scaffold_566	spliced_intron	3943	4175	+	asmbl_46537	none	STRG.30371.1	1	Trinity_GG_16802_c0_g1_i7,blat.proc3829879.chain_708,blat.proc3829885.chain_3387	3
scaffold_2	spliced_intron	13063387	13063523	+	asmbl_24844,asmbl_24845,asmbl_24847	none	STRG.2330.1,STRG.2330.2,blat.proc3829871.chain_2457,blat.proc3829871.chain_2458,blat.proc3829871.chain_2459,blat.proc3829871.chain_2461	6	blat.proc3829871.chain_2456	1
scaffold_1	retained_intron	12690151	12690339	-	asmbl_751,asmbl_754	none	STRG.891.3,STRG.891.4,Trinity_GG_17484_c0_g1_i1,blat.proc3829887.chain_795	4	STRG.891.1,STRG.891.2,blat.proc3829887.chain_796	3
scaffold_12	alternate_exon	11360671	11364258	-	asmbl_7940	none	STRG.15064.1,blat.proc3829893.chain_3450	2	STRG.15064.2,Trinity_GG_25415_c0_g1_i1,blat.proc3829893.chain_3449	3
scaffold_13	retained_exon	6396424	6396467	+	asmbl_10910	none	Trinity_GG_8718_c0_g1_i8,blat.proc3829879.chain_556	2	STRG.15914.1,STRG.15914.5,Trinity_GG_8718_c0_g1_i1,blat.proc3829879.chain_557	4
scaffold_15	alternate_exon	5457696	5457903	-	asmbl_15218	none	STRG.18219.2,Trinity_GG_27252_c0_g1_i10,blat.proc3829895.chain_2954	3	STRG.18219.3,Trinity_GG_27252_c0_g1_i2,blat.proc3829895.chain_2957	3
scaffold_5	retained_intron	11434446	11434524	-	asmbl_45792	none	blat.proc3829889.chain_2489	1	STRG.6396.1,blat.proc3829889.chain_2490	2
scaffold_28	alternate_exon	8410057	8410101	+	asmbl_38436	none	STRG.29888.2	1	STRG.29888.1	1
scaffold_8	spliced_intron	12693374	12693431	+	asmbl_52319,asmbl_52320,asmbl_52321	none	STRG.10436.1,STRG.10436.2,blat.proc3829875.chain_2949	3	blat.proc3829875.chain_2944,blat.proc3829875.chain_2947	2
scaffold_9	starts_in_intron	5247183	5247183	+	asmbl_53998	none	Trinity_GG_6188_c0_g1_i4,blat.proc3829875.chain_3584	2	STRG.11095.2	1
scaffold_13	alt_acceptor	3922710	3922711	-	asmbl_9555	none	STRG.15707.1,blat.proc3829895.chain_431	2	STRG.15707.2,STRG.15707.3,blat.proc3829895.chain_430	3
scaffold_21	starts_in_intron	5533966	5533966	-	asmbl_27695	none	blat.proc3829899.chain_1091	1	STRG.24071.2	1
scaffold_15	spliced_intron	15501375	15501520	+	asmbl_14751,asmbl_14752,asmbl_14753,asmbl_14755	none	STRG.18940.1,Trinity_GG_10382_c0_g1_i1,Trinity_GG_10382_c0_g1_i3,Trinity_GG_10382_c0_g1_i5,Trinity_GG_10382_c0_g1_i6,blat.proc3829879.chain_3534,blat.proc3829879.chain_3535,blat.proc3829879.chain_3536,blat.proc3829879.chain_3537	9	Trinity_GG_10382_c0_g1_i2,blat.proc3829879.chain_3533	2
scaffold_26	skipped_exon	3941793	3943946	-	asmbl_34791	none	STRG.28066.1	1	STRG.28066.2,blat.proc3829901.chain_1288	2
scaffold_18	alt_donor	1893642	1893643	-	asmbl_19688,asmbl_19689,asmbl_19691,asmbl_19692,asmbl_19693,asmbl_19694	none	STRG.21072.1,STRG.21072.10,STRG.21072.3,STRG.21072.5,STRG.21072.7,STRG.21072.8,STRG.21072.9,blat.proc3829897.chain_1896	8	STRG.21072.2,STRG.21072.4,STRG.21072.6	3
scaffold_10	starts_in_intron	13914735	13914735	+	asmbl_4903	none	blat.proc3829877.chain_1551	1	STRG.12970.1	1
scaffold_8	starts_in_intron	7805076	7805076	-	asmbl_52918	none	blat.proc3829891.chain_2146	1	STRG.10090.1,blat.proc3829891.chain_2143,blat.proc3829891.chain_2145,blat.proc3829891.chain_2147	4
scaffold_20	alternate_exon	427704	428414	+	asmbl_25507	none	STRG.22729.5	1	STRG.22729.2,STRG.22729.4	2
scaffold_18	alt_acceptor	7172346	7172347	-	asmbl_19961,asmbl_19964	none	STRG.21405.1,STRG.21405.3,Trinity_GG_28995_c0_g1_i3,blat.proc3829897.chain_2259	4	STRG.21405.2,Trinity_GG_28995_c0_g1_i5,blat.proc3829897.chain_2258	3
scaffold_23	alt_donor	7281792	7281793	-	asmbl_31742	none	STRG.26034.3	1	STRG.26034.2	1
scaffold_20	spliced_intron	10069728	10069888	-	asmbl_27002,asmbl_27003	none	STRG.23536.1,STRG.23536.2,Trinity_GG_30137_c0_g1_i2,Trinity_GG_30137_c0_g1_i4,blat.proc3829899.chain_547,blat.proc3829899.chain_548	6	Trinity_GG_30137_c0_g1_i1,blat.proc3829899.chain_549	2
scaffold_2	skipped_exon	9816705	9818285	-	asmbl_23405	none	STRG.2197.1,blat.proc3829887.chain_2107	2	STRG.2197.2	1
scaffold_1	alt_acceptor	12410979	12410980	+	asmbl_2195	none	STRG.853.1,Trinity_GG_524_c0_g1_i2,blat.proc3829871.chain_943	3	STRG.853.2	1
scaffold_18	skipped_exon	7172231	7172664	-	asmbl_19962	none	STRG.21405.2,Trinity_GG_28995_c0_g1_i5,blat.proc3829897.chain_2258	3	STRG.21405.1,STRG.21405.3,Trinity_GG_28995_c0_g1_i3,blat.proc3829897.chain_2259	4
scaffold_23	alternate_exon	10204072	10204624	-	asmbl_31846	none	STRG.26215.1,blat.proc3829899.chain_3229	2	STRG.26215.3	1
scaffold_9	retained_exon	9871369	9871452	-	asmbl_55209	none	Trinity_GG_23302_c0_g1_i1,blat.proc3829891.chain_3519	2	STRG.11345.1,Trinity_GG_23302_c0_g1_i4,blat.proc3829891.chain_3522	3
scaffold_8	alt_donor	11846171	11846172	+	asmbl_52275	none	blat.proc3829875.chain_2982	1	STRG.10382.2,STRG.10382.3,blat.proc3829875.chain_2967,blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2975,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978,blat.proc3829875.chain_2979	12
scaffold_18	retained_exon	3917889	3918019	-	asmbl_19824	none	STRG.21192.4	1	STRG.21192.3	1
scaffold_5	alt_acceptor	981757	981758	-	asmbl_45196	none	STRG.5641.1,blat.proc3829889.chain_1755	2	STRG.5641.2	1
scaffold_16	spliced_intron	14575800	14575872	-	asmbl_16653	none	STRG.19832.1	1	STRG.19832.2,blat.proc3829897.chain_778	2
scaffold_12	alt_donor	2272521	2272522	-	asmbl_7459	none	STRG.14479.2	1	STRG.14479.1,blat.proc3829893.chain_2799	2
scaffold_11	skipped_exon	2090208	2091184	+	asmbl_5320	none	STRG.13357.2,blat.proc3829877.chain_1859	2	STRG.13357.1,STRG.13357.3,blat.proc3829877.chain_1858,blat.proc3829877.chain_1860	4
scaffold_4	alt_acceptor	8081256	8081257	+	asmbl_42871	none	STRG.4622.2	1	STRG.4622.1,blat.proc3829873.chain_1017	2
scaffold_2	alt_acceptor	15488567	15488568	+	asmbl_25076,asmbl_25078	none	STRG.2499.1,STRG.2499.3,blat.proc3829871.chain_2700	3	STRG.2499.2,STRG.2499.4,blat.proc3829871.chain_2698,blat.proc3829871.chain_2699	4
scaffold_3	retained_exon	8533143	8533271	+	asmbl_40177	none	STRG.3420.1	1	STRG.3420.2	1
scaffold_18	skipped_exon	7228357	7231127	+	asmbl_20756	none	STRG.21439.2,blat.proc3829881.chain_2327	2	STRG.21439.1,STRG.21439.3,blat.proc3829881.chain_2330,blat.proc3829881.chain_2331	4
scaffold_8	alt_donor	6019135	6019136	+	asmbl_51907	none	blat.proc3829875.chain_2559	1	blat.proc3829875.chain_2560	1
scaffold_4	alternate_exon	5190556	5190682	-	asmbl_41298,asmbl_41300	none	STRG.4410.3,STRG.4410.4,blat.proc3829889.chain_523	3	STRG.4410.1,blat.proc3829889.chain_521	2
scaffold_24	alternate_exon	5323162	5323277	-	asmbl_32886	none	STRG.26603.2	1	STRG.26603.1,blat.proc3829899.chain_3671	2
scaffold_1	retained_exon	5996766	5996816	-	asmbl_317	none	STRG.403.2,blat.proc3829887.chain_309	2	STRG.403.1,blat.proc3829887.chain_310,blat.proc3829887.chain_311	3
scaffold_13	alternate_exon	6619116	6619724	-	asmbl_9766	none	STRG.15949.2,Trinity_GG_25988_c0_g1_i3,blat.proc3829895.chain_728	3	STRG.15949.1	1
scaffold_6	skipped_exon	14622505	14623328	-	asmbl_48953	none	STRG.8218.4	1	STRG.8218.5,blat.proc3829891.chain_466	2
scaffold_20	starts_in_intron	9531227	9531227	+	asmbl_26019	none	blat.proc3829883.chain_580	1	STRG.23480.1,STRG.23480.2	2
scaffold_3	spliced_intron	14177620	14177901	-	asmbl_39273	none	STRG.3749.1,blat.proc3829887.chain_3533	2	Trinity_GG_19082_c0_g1_i2,blat.proc3829887.chain_3534	2
scaffold_16	retained_intron	7702281	7702690	-	asmbl_16371	none	blat.proc3829897.chain_366	1	STRG.19406.1,blat.proc3829897.chain_365,blat.proc3829897.chain_367	3
scaffold_21	retained_intron	8278506	8278610	+	asmbl_28822	none	STRG.24353.4	1	STRG.24353.1,STRG.24353.3	2
scaffold_16	retained_intron	14437676	14437729	+	asmbl_17477	none	STRG.19805.1,Trinity_GG_10865_c2_g1_i1,blat.proc3829881.chain_682	3	STRG.19805.2	1
scaffold_21	alt_acceptor	2999540	2999541	+	asmbl_28453	none	STRG.23909.1,blat.proc3829883.chain_1085	2	STRG.23909.2	1
scaffold_1	spliced_intron	12336858	12337333	-	asmbl_710,asmbl_711,asmbl_713,asmbl_714,asmbl_715,asmbl_716,asmbl_717,asmbl_718,asmbl_719,asmbl_720,asmbl_721,asmbl_722,asmbl_723	none	STRG.843.1,STRG.843.2,blat.proc3829887.chain_734,blat.proc3829887.chain_735,blat.proc3829887.chain_736,blat.proc3829887.chain_737,blat.proc3829887.chain_738,blat.proc3829887.chain_739,blat.proc3829887.chain_741,blat.proc3829887.chain_742,blat.proc3829887.chain_743,blat.proc3829887.chain_744,blat.proc3829887.chain_745,blat.proc3829887.chain_746	14	blat.proc3829887.chain_740	1
scaffold_10	retained_intron	635222	635413	-	asmbl_2890,asmbl_2893,asmbl_2895	none	STRG.11933.3,STRG.11933.4,Trinity_GG_23652_c0_g1_i1,Trinity_GG_23652_c0_g1_i2,blat.proc3829893.chain_379,blat.proc3829893.chain_381	6	STRG.11933.2,blat.proc3829893.chain_377	2
scaffold_13	spliced_intron	11598971	11599668	+	asmbl_11270,asmbl_11275,asmbl_11278,asmbl_11279	none	STRG.16295.2,STRG.16295.4,blat.proc3829879.chain_1015,blat.proc3829879.chain_1020,blat.proc3829879.chain_1022,blat.proc3829879.chain_1023	6	Trinity_GG_8948_c2_g1_i1,blat.proc3829879.chain_1024	2
scaffold_3	alt_acceptor	8167679	8167680	-	asmbl_38974	none	blat.proc3829887.chain_3134	1	blat.proc3829887.chain_3128	1
scaffold_17	skipped_exon	7022213	7023454	+	asmbl_18015	none	STRG.20355.3	1	STRG.20355.2	1
scaffold_9	alt_acceptor	6405824	6405825	+	asmbl_54079,asmbl_54080,asmbl_54083	none	STRG.11163.2,Trinity_GG_6211_c0_g1_i2,Trinity_GG_6211_c0_g1_i4,blat.proc3829875.chain_3632,blat.proc3829875.chain_3633,blat.proc3829875.chain_3634	6	STRG.11163.1,STRG.11163.3	2
scaffold_5	alt_acceptor	5046459	5046460	+	asmbl_43991	none	STRG.5951.1,blat.proc3829873.chain_2107	2	STRG.5951.2,blat.proc3829873.chain_2109,blat.proc3829873.chain_2112,blat.proc3829873.chain_2113	4
scaffold_12	spliced_intron	2721443	2721926	+	asmbl_8481	none	Trinity_GG_8024_c0_g1_i5	1	Trinity_GG_8024_c0_g2_i1,blat.proc3829877.chain_3022	2
scaffold_340	spliced_intron	4207	4444	+	asmbl_40970	none	STRG.30268.1	1	Trinity_GG_16762_c0_g2_i1	1
scaffold_27	retained_intron	931032	931338	-	asmbl_36670,asmbl_36671	none	STRG.28569.1,STRG.28569.2,blat.proc3829901.chain_1746,blat.proc3829901.chain_1747,blat.proc3829901.chain_1748	5	STRG.28569.3	1
scaffold_12	ends_in_intron	16438856	16438856	+	asmbl_9150	none	blat.proc3829879.chain_57	1	STRG.15389.2,blat.proc3829879.chain_58	2
scaffold_2	alt_acceptor	14480289	14480290	-	asmbl_23620	none	STRG.2448.2	1	STRG.2448.1,blat.proc3829887.chain_2328	2
scaffold_6	alt_acceptor	10143388	10143389	-	asmbl_48592	none	STRG.7843.1,blat.proc3829891.chain_101	2	STRG.7843.2	1
scaffold_13	retained_intron	2272879	2273221	-	asmbl_9403,asmbl_9404,asmbl_9405	none	blat.proc3829895.chain_308,blat.proc3829895.chain_310,blat.proc3829895.chain_317	3	STRG.15533.1,STRG.15533.2,STRG.15533.3,Trinity_GG_25734_c0_g1_i5,blat.proc3829895.chain_309,blat.proc3829895.chain_311,blat.proc3829895.chain_312,blat.proc3829895.chain_313,blat.proc3829895.chain_316	9
scaffold_16	alt_acceptor	10977219	10977220	-	asmbl_16502	none	STRG.19633.2	1	STRG.19633.1,blat.proc3829897.chain_540	2
scaffold_12	retained_exon	10605626	10605683	+	asmbl_8912	none	STRG.15020.1,blat.proc3829877.chain_3505	2	STRG.15020.2,STRG.15020.3,blat.proc3829877.chain_3504,blat.proc3829877.chain_3509	4
scaffold_5	ends_in_intron	5498937	5498937	-	asmbl_45426	none	Trinity_GG_20327_c1_g1_i1,blat.proc3829889.chain_1955	2	STRG.5963.1,blat.proc3829889.chain_1954	2
scaffold_18	retained_exon	3916302	3916386	-	asmbl_19821	none	STRG.21192.5	1	STRG.21192.3	1
scaffold_17	alt_acceptor	7047493	7047494	+	asmbl_18018	none	Trinity_GG_11134_c1_g1_i1,blat.proc3829881.chain_1119,blat.proc3829881.chain_1122	3	STRG.20358.2,blat.proc3829881.chain_1120	2
scaffold_23	spliced_intron	2164596	2164823	-	asmbl_31418,asmbl_31420	none	STRG.25669.5,STRG.25669.7	2	STRG.25669.2,STRG.25669.4	2
scaffold_11	starts_in_intron	1016373	1016373	-	asmbl_6378	none	blat.proc3829893.chain_1723	1	STRG.13289.1,STRG.13289.2,blat.proc3829893.chain_1724	3
scaffold_23	alt_donor	5339870	5339871	-	asmbl_31632	none	STRG.25890.3	1	STRG.25890.1,Trinity_GG_31478_c0_g1_i4,Trinity_GG_31478_c0_g1_i6,blat.proc3829899.chain_2980,blat.proc3829899.chain_2981	5
scaffold_15	starts_in_intron	8791247	8791247	+	asmbl_14297	none	blat.proc3829879.chain_3019	1	STRG.18412.1,STRG.18412.2,blat.proc3829879.chain_3020	3
scaffold_23	skipped_exon	7235072	7235671	+	asmbl_30980	none	STRG.26027.2	1	STRG.26027.1,STRG.26027.3	2
scaffold_14	retained_exon	6449925	6450069	-	asmbl_13116	none	STRG.17077.1,blat.proc3829895.chain_1808	2	STRG.17077.2	1
scaffold_4	ends_in_intron	13108460	13108460	-	asmbl_41714	none	Trinity_GG_19781_c0_g1_i2,blat.proc3829889.chain_1029	2	STRG.4953.1,blat.proc3829889.chain_1028	2
scaffold_6	alt_acceptor	8642197	8642198	+	asmbl_47103,asmbl_47104,asmbl_47105,asmbl_47106	none	STRG.7737.1,STRG.7737.2,blat.proc3829875.chain_103,blat.proc3829875.chain_104,blat.proc3829875.chain_105	5	STRG.7737.3	1
scaffold_19	alternate_exon	4863379	4866797	+	asmbl_22146	none	STRG.22053.1	1	STRG.22053.2	1
scaffold_5	starts_in_intron	168866	168866	+	asmbl_43742	none	blat.proc3829873.chain_1789	1	STRG.5571.1,Trinity_GG_3062_c0_g1_i2	2
scaffold_1	spliced_intron	14522266	14522424	-	asmbl_935,asmbl_936	none	STRG.1047.1,STRG.1047.2,blat.proc3829887.chain_954,blat.proc3829887.chain_956	4	Trinity_GG_17569_c0_g1_i1,blat.proc3829887.chain_955,blat.proc3829887.chain_957	3
scaffold_25	ends_in_intron	9119822	9119822	+	asmbl_33777	none	blat.proc3829885.chain_764	1	STRG.27709.3	1
scaffold_19	spliced_intron	12491982	12492152	+	asmbl_22617	none	STRG.22568.5,blat.proc3829881.chain_3533	2	STRG.22568.3,blat.proc3829881.chain_3534	2
scaffold_15	retained_intron	13324142	13324642	+	asmbl_14574,asmbl_14577,asmbl_14580	none	Trinity_GG_10264_c0_g1_i6,blat.proc3829879.chain_3296,blat.proc3829879.chain_3299,blat.proc3829879.chain_3302	4	STRG.18763.1,Trinity_GG_10264_c0_g1_i2,Trinity_GG_10264_c0_g1_i4,blat.proc3829879.chain_3297,blat.proc3829879.chain_3298,blat.proc3829879.chain_3300,blat.proc3829879.chain_3301,blat.proc3829879.chain_3303,blat.proc3829879.chain_3304	9
scaffold_25	alt_donor	6438182	6438183	+	asmbl_33627	none	STRG.27506.1,blat.proc3829885.chain_535	2	STRG.27506.2,blat.proc3829885.chain_534	2
scaffold_5	alt_donor	10196617	10196618	-	asmbl_45702,asmbl_45708	none	STRG.6312.1,blat.proc3829889.chain_2387,blat.proc3829889.chain_2389	3	blat.proc3829889.chain_2388	1
scaffold_5	alternate_exon	10198045	10199134	-	asmbl_45704	none	blat.proc3829889.chain_2388	1	blat.proc3829889.chain_2386	1
scaffold_1	retained_intron	952977	953543	+	asmbl_1441	none	Trinity_GG_41_c0_g1_i1,blat.proc3829871.chain_77	2	STRG.49.1,blat.proc3829871.chain_78	2
scaffold_22	starts_in_intron	5999862	5999862	+	asmbl_29375	none	blat.proc3829883.chain_1985	1	blat.proc3829883.chain_1984,blat.proc3829883.chain_1986	2
scaffold_7	alt_donor	18785081	18785082	+	asmbl_51426	none	STRG.9691.3	1	STRG.9691.1,STRG.9691.2,STRG.9691.4,STRG.9691.5,blat.proc3829875.chain_2056	5
scaffold_13	alt_acceptor	3266818	3266819	-	asmbl_9485	none	STRG.15621.2	1	STRG.15621.1,blat.proc3829895.chain_358	2
scaffold_19	skipped_exon	8760674	8762277	-	asmbl_21518	none	STRG.22317.1,blat.proc3829897.chain_3048	2	STRG.22317.2,blat.proc3829897.chain_3049	2
scaffold_10	alt_acceptor	1621480	1621481	+	asmbl_4235	none	STRG.12018.4	1	STRG.12018.1,STRG.12018.2,STRG.12018.3,Trinity_GG_6672_c1_g1_i1,Trinity_GG_6672_c1_g1_i2,Trinity_GG_6672_c1_g1_i3,blat.proc3829877.chain_697,blat.proc3829877.chain_698,blat.proc3829877.chain_699	9
scaffold_1	alt_acceptor	6283665	6283666	-	asmbl_345	none	blat.proc3829887.chain_325	1	STRG.425.2,blat.proc3829887.chain_330,blat.proc3829887.chain_333	3
scaffold_18	starts_in_intron	8911880	8911880	-	asmbl_20082,asmbl_20083	none	STRG.21550.1,STRG.21550.5	2	STRG.21550.2,STRG.21550.3,STRG.21550.4,STRG.21550.6,Trinity_GG_29067_c0_g1_i1,blat.proc3829897.chain_2393,blat.proc3829897.chain_2394,blat.proc3829897.chain_2395,blat.proc3829897.chain_2398	9
scaffold_7	alt_donor	15270861	15270862	+	asmbl_51308,asmbl_51312,asmbl_51314,asmbl_51315	none	STRG.9532.2,STRG.9532.4,blat.proc3829875.chain_1984,blat.proc3829875.chain_1985,blat.proc3829875.chain_1987	5	STRG.9532.1,blat.proc3829875.chain_1982	2
scaffold_12	alternate_exon	15078225	15078316	-	asmbl_8176	none	STRG.15294.3	1	STRG.15294.1,Trinity_GG_25575_c0_g1_i1,blat.proc3829893.chain_3750	3
scaffold_24	alternate_exon	5950912	5951910	+	asmbl_32270,asmbl_32272,asmbl_32279,asmbl_32280	none	blat.proc3829883.chain_3537,blat.proc3829883.chain_3541,blat.proc3829883.chain_3543,blat.proc3829883.chain_3545	4	blat.proc3829883.chain_3548	1
scaffold_14	spliced_intron	13897375	13897829	+	asmbl_12498,asmbl_12500	none	STRG.17653.3,STRG.17653.5	2	blat.proc3829879.chain_2353	1
scaffold_1	alt_donor	3165329	3165330	+	asmbl_1568	none	STRG.194.3	1	STRG.194.1,STRG.194.2,Trinity_GG_88_c0_g1_i2,Trinity_GG_88_c0_g1_i3,blat.proc3829871.chain_152,blat.proc3829871.chain_153	6
scaffold_9	alt_donor	61962	61963	-	asmbl_54768	none	STRG.10754.4,Trinity_GG_23008_c0_g2_i2,blat.proc3829891.chain_2965	3	blat.proc3829891.chain_2964	1
scaffold_17	alt_donor	7855513	7855514	-	asmbl_19102	none	STRG.20401.1,Trinity_GG_28487_c0_g1_i1,blat.proc3829897.chain_1365	3	STRG.20401.2	1
scaffold_27	alt_donor	2629512	2629513	-	asmbl_36787	none	STRG.28717.2,blat.proc3829901.chain_1909	2	STRG.28717.3,blat.proc3829901.chain_1908	2
scaffold_2	alt_acceptor	7881105	7881106	+	asmbl_24617,asmbl_24623	none	STRG.2088.1,Trinity_GG_1183_c0_g1_i10,Trinity_GG_1183_c0_g1_i4,blat.proc3829871.chain_2178,blat.proc3829871.chain_2185	5	Trinity_GG_1183_c0_g1_i16,blat.proc3829871.chain_2182	2
scaffold_1	starts_in_intron	20743261	20743261	-	asmbl_1200	none	blat.proc3829887.chain_1305	1	STRG.1419.1,blat.proc3829887.chain_1306	2
scaffold_44	alt_donor	30869	30870	-	asmbl_43689,asmbl_43690	none	STRG.30027.1,STRG.30027.2,blat.proc3829901.chain_3130	3	STRG.30027.3	1
scaffold_825	alt_acceptor	3835	3836	+	asmbl_53669	none	STRG.30456.2	1	STRG.30456.1	1
scaffold_11	starts_in_intron	8104551	8104551	+	asmbl_5700	none	blat.proc3829877.chain_2299	1	STRG.13811.1,STRG.13811.2,STRG.13811.3,STRG.13811.4,blat.proc3829877.chain_2298,blat.proc3829877.chain_2300,blat.proc3829877.chain_2301,blat.proc3829877.chain_2303	8
scaffold_7	spliced_intron	5910425	5910739	-	asmbl_49710	none	STRG.8884.2	1	STRG.8884.1,blat.proc3829891.chain_1219	2
scaffold_8	retained_intron	1801692	1801727	-	asmbl_52698,asmbl_52699	none	STRG.9770.1,STRG.9770.2	2	blat.proc3829875.chain_2240	1
scaffold_4	alt_acceptor	1332589	1332590	-	asmbl_41108,asmbl_41110,asmbl_41111,asmbl_41113	none	STRG.4173.2,STRG.4173.4,STRG.4173.5,blat.proc3829889.chain_299,blat.proc3829889.chain_300,blat.proc3829889.chain_301	6	STRG.4173.3,blat.proc3829889.chain_302	2
scaffold_27	retained_intron	1551570	1551779	+	asmbl_35987	none	blat.proc3829885.chain_1673	1	STRG.28623.1,STRG.28623.2,STRG.28623.3,Trinity_GG_15852_c0_g1_i3,blat.proc3829885.chain_1669,blat.proc3829885.chain_1672	6
scaffold_26	starts_in_intron	9751747	9751747	+	asmbl_35774	none	STRG.28496.3,Trinity_GG_15719_c2_g1_i1,blat.proc3829885.chain_1441	3	STRG.28496.2	1
scaffold_12	spliced_intron	4722673	4722768	-	asmbl_7566	none	blat.proc3829893.chain_3003	1	STRG.14636.2,blat.proc3829893.chain_3004	2
scaffold_27	ends_in_intron	2958061	2958061	+	asmbl_36107	none	blat.proc3829885.chain_1809	1	STRG.28759.2,blat.proc3829885.chain_1810	2
scaffold_23	starts_in_intron	2612048	2612048	-	asmbl_31472	none	blat.proc3829899.chain_2842	1	STRG.25709.1,STRG.25709.2,STRG.25709.3,blat.proc3829899.chain_2843,blat.proc3829899.chain_2844,blat.proc3829899.chain_2846	6
scaffold_4	alt_donor	3237422	3237423	-	asmbl_41166	none	STRG.4247.3	1	STRG.4247.1,STRG.4247.4	2
scaffold_13	retained_intron	7935012	7935165	-	asmbl_9876,asmbl_9877	none	STRG.16055.3,blat.proc3829895.chain_799,blat.proc3829895.chain_803	3	Trinity_GG_26026_c0_g1_i5,blat.proc3829895.chain_802	2
scaffold_11	retained_intron	10398841	10399063	+	asmbl_5908	none	blat.proc3829877.chain_2428	1	STRG.14037.1,blat.proc3829877.chain_2425,blat.proc3829877.chain_2426	3
scaffold_7	ends_in_intron	6189735	6189735	+	asmbl_50730,asmbl_50732	none	Trinity_GG_4908_c0_g1_i3,blat.proc3829875.chain_1328,blat.proc3829875.chain_1329	3	STRG.8903.1,STRG.8903.2,Trinity_GG_4908_c0_g1_i1,blat.proc3829875.chain_1327	4
scaffold_25	retained_intron	6302876	6303091	+	asmbl_33614	none	blat.proc3829885.chain_465	1	STRG.27516.1,blat.proc3829885.chain_464,blat.proc3829885.chain_467,blat.proc3829885.chain_469,blat.proc3829885.chain_470,blat.proc3829885.chain_471,blat.proc3829885.chain_472,blat.proc3829885.chain_473,blat.proc3829885.chain_474	9
scaffold_19	alt_acceptor	678962	678963	+	asmbl_22000	none	STRG.21838.1,blat.proc3829881.chain_2826	2	blat.proc3829881.chain_2823	1
scaffold_5	alternate_exon	2601797	2608996	+	asmbl_43853	none	STRG.5778.1,blat.proc3829873.chain_1904	2	STRG.5778.2,Trinity_GG_3129_c1_g1_i1,blat.proc3829873.chain_1905	3
scaffold_11	alt_donor	14462942	14462943	-	asmbl_7143	none	STRG.14231.2	1	STRG.14231.3,blat.proc3829893.chain_2642	2
scaffold_17	retained_intron	3989814	3990042	-	asmbl_18884	none	blat.proc3829897.chain_1116	1	STRG.20147.1,STRG.20147.2,blat.proc3829897.chain_1115	3
scaffold_4	alt_acceptor	12629642	12629643	-	asmbl_41683	none	STRG.4901.3,blat.proc3829889.chain_896	2	STRG.4901.1,blat.proc3829889.chain_893,blat.proc3829889.chain_894	3
scaffold_4	skipped_exon	3340468	3342662	+	asmbl_42506	none	STRG.4264.3	1	STRG.4264.1,Trinity_GG_2387_c0_g1_i2,blat.proc3829873.chain_642	3
scaffold_25	spliced_intron	994851	995030	-	asmbl_34006,asmbl_34008	none	STRG.27141.1,blat.proc3829901.chain_442,blat.proc3829901.chain_444	3	blat.proc3829901.chain_443	1
scaffold_15	retained_intron	5454907	5455211	-	asmbl_15224	none	blat.proc3829895.chain_2952	1	STRG.18219.1,STRG.18219.2,STRG.18219.3,Trinity_GG_27252_c0_g1_i10,Trinity_GG_27252_c0_g1_i2,blat.proc3829895.chain_2953,blat.proc3829895.chain_2954,blat.proc3829895.chain_2955,blat.proc3829895.chain_2956,blat.proc3829895.chain_2957	10
scaffold_2	retained_intron	14562180	14562666	+	asmbl_24987	none	STRG.2454.3	1	STRG.2454.1,STRG.2454.2,STRG.2454.4,STRG.2454.5	4
scaffold_15	alternate_exon	11967644	11968616	-	asmbl_15560	none	STRG.18627.1,Trinity_GG_27483_c0_g1_i1,blat.proc3829895.chain_3409	3	STRG.18627.2	1
scaffold_3	retained_intron	18937840	18937873	+	asmbl_40710	none	blat.proc3829873.chain_426	1	STRG.4063.1	1
scaffold_11	alt_acceptor	15631601	15631602	+	asmbl_6096,asmbl_6097,asmbl_6099	none	STRG.14287.1,STRG.14287.2,blat.proc3829877.chain_2773,blat.proc3829877.chain_2774	4	blat.proc3829877.chain_2775	1
scaffold_6	retained_intron	3799951	3800050	+	asmbl_46804	none	blat.proc3829873.chain_3490	1	STRG.7371.1,STRG.7371.2,blat.proc3829873.chain_3488,blat.proc3829873.chain_3489	4
scaffold_57	starts_in_intron	10934	10934	-	asmbl_46541	none	blat.proc3829901.chain_3164	1	STRG.30058.1,Trinity_GG_33870_c0_g1_i4,blat.proc3829901.chain_3163	3
scaffold_7	alternate_exon	2475259	2475382	+	asmbl_50524	none	STRG.8671.2,blat.proc3829875.chain_1067	2	STRG.8671.1	1
scaffold_11	retained_exon	9699752	9699802	-	asmbl_6936	none	Trinity_GG_24840_c1_g1_i1,blat.proc3829893.chain_2428	2	STRG.13979.1,Trinity_GG_24840_c1_g1_i2,blat.proc3829893.chain_2427	3
scaffold_9	retained_intron	11777566	11777749	+	asmbl_54360	none	Trinity_GG_6374_c0_g1_i1,blat.proc3829877.chain_212	2	STRG.11478.2	1
scaffold_7	spliced_intron	13866546	13867075	-	asmbl_50139	none	blat.proc3829891.chain_1673	1	STRG.9469.2,blat.proc3829891.chain_1675	2
scaffold_17	ends_in_intron	9984538	9984538	+	asmbl_18267	none	Trinity_GG_11297_c0_g1_i2,blat.proc3829881.chain_1443	2	blat.proc3829881.chain_1444	1
scaffold_2	ends_in_intron	7891702	7891702	+	asmbl_24632	none	Trinity_GG_1187_c0_g1_i15,blat.proc3829871.chain_2197	2	STRG.2086.1,STRG.2086.2,STRG.2086.3,Trinity_GG_1187_c0_g1_i13,blat.proc3829871.chain_2189,blat.proc3829871.chain_2192,blat.proc3829871.chain_2195,blat.proc3829871.chain_2196,blat.proc3829871.chain_2199	9
scaffold_19	spliced_intron	3669778	3669984	-	asmbl_21322	none	STRG.22034.2,Trinity_GG_29269_c0_g1_i5,blat.proc3829897.chain_2739	3	STRG.22034.4,Trinity_GG_29269_c0_g1_i1,blat.proc3829897.chain_2744	3
scaffold_1	alt_acceptor	6299428	6299429	-	asmbl_359	none	STRG.424.4	1	blat.proc3829887.chain_303	1
scaffold_19	alt_donor	12689072	12689073	-	asmbl_21739	none	STRG.22579.2,blat.proc3829897.chain_3330	2	STRG.22579.1,blat.proc3829897.chain_3329,blat.proc3829897.chain_3331,blat.proc3829897.chain_3332	4
scaffold_17	spliced_intron	9004119	9004561	+	asmbl_18184	none	blat.proc3829881.chain_1322	1	STRG.20513.2,blat.proc3829881.chain_1320	2
scaffold_13	alternate_exon	7505395	7506361	-	asmbl_9847	none	STRG.16034.3,Trinity_GG_26030_c0_g1_i4,blat.proc3829895.chain_819	3	STRG.16034.2,STRG.16034.5,Trinity_GG_26030_c0_g1_i9,blat.proc3829895.chain_820	4
scaffold_6	starts_in_intron	18084330	18084330	+	asmbl_47759	none	STRG.8493.2	1	blat.proc3829875.chain_879,blat.proc3829875.chain_883	2
scaffold_13	retained_intron	7991437	7991929	-	asmbl_9886,asmbl_9887	none	STRG.16065.2,STRG.16065.3,blat.proc3829895.chain_785,blat.proc3829895.chain_789	4	STRG.16065.1,blat.proc3829895.chain_787,blat.proc3829895.chain_788	3
scaffold_11	retained_intron	5501775	5501898	-	asmbl_6642,asmbl_6643	none	STRG.13608.2,blat.proc3829893.chain_2062	2	blat.proc3829893.chain_2061	1
scaffold_52	retained_intron	6626	6929	+	asmbl_46475,asmbl_46476	none	STRG.30038.1,STRG.30038.3,Trinity_GG_16629_c0_g1_i3,Trinity_GG_16629_c0_g1_i4,Trinity_GG_16629_c0_g1_i5,blat.proc3829885.chain_3099,blat.proc3829885.chain_3101,blat.proc3829885.chain_3102	8	STRG.30038.2,Trinity_GG_16629_c0_g1_i2,blat.proc3829885.chain_3100	3
scaffold_4	starts_in_intron	4689416	4689416	+	asmbl_42630	none	blat.proc3829873.chain_713	1	STRG.4376.1,blat.proc3829873.chain_716,blat.proc3829873.chain_718	3
scaffold_11	alt_acceptor	3767492	3767493	-	asmbl_6551,asmbl_6555,asmbl_6557	none	STRG.13488.1,STRG.13488.3,STRG.13488.4,blat.proc3829893.chain_1962	4	STRG.13488.2	1
scaffold_13	retained_intron	2507577	2507742	+	asmbl_10605	none	Trinity_GG_8559_c0_g1_i4,blat.proc3829879.chain_270	2	STRG.15546.1,STRG.15546.2,STRG.15546.3,Trinity_GG_8559_c0_g1_i1,Trinity_GG_8559_c0_g1_i3,Trinity_GG_8559_c0_g1_i5,blat.proc3829879.chain_268,blat.proc3829879.chain_269,blat.proc3829879.chain_271	9
scaffold_7	spliced_intron	6580953	6581051	-	asmbl_49735	none	STRG.8920.2	1	STRG.8920.1,blat.proc3829891.chain_1239	2
scaffold_7	alt_acceptor	8073301	8073302	+	asmbl_50840	none	STRG.9038.3	1	STRG.9038.1,STRG.9038.2,blat.proc3829875.chain_1461,blat.proc3829875.chain_1462,blat.proc3829875.chain_1463	5
scaffold_3	skipped_exon	13833535	13836456	+	asmbl_40421	none	blat.proc3829873.chain_126	1	blat.proc3829873.chain_124	1
scaffold_23	ends_in_intron	2612353	2612353	-	asmbl_31474,asmbl_31475,asmbl_31476	none	STRG.25709.5,STRG.25709.6,blat.proc3829899.chain_2845	3	STRG.25709.1,STRG.25709.2,STRG.25709.3,blat.proc3829899.chain_2843,blat.proc3829899.chain_2844,blat.proc3829899.chain_2846	6
scaffold_3	alternate_exon	11639032	11642530	+	asmbl_40320	none	blat.proc3829873.chain_15	1	STRG.3593.2	1
scaffold_5	alt_donor	4773756	4773757	-	asmbl_45400	none	STRG.5933.4	1	STRG.5933.1,STRG.5933.3	2
scaffold_6	retained_intron	12992093	12992335	-	asmbl_48793,asmbl_48795	none	STRG.8061.2,blat.proc3829891.chain_262,blat.proc3829891.chain_263,blat.proc3829891.chain_271	4	STRG.8061.3,STRG.8061.4,blat.proc3829891.chain_264,blat.proc3829891.chain_275	4
scaffold_5	retained_intron	68119	68377	+	asmbl_43733	none	Trinity_GG_3057_c0_g1_i3,Trinity_GG_3057_c0_g1_i4,Trinity_GG_3057_c0_g1_i5,blat.proc3829873.chain_1776,blat.proc3829873.chain_1777	5	blat.proc3829873.chain_1778	1
scaffold_3	starts_in_intron	5870617	5870617	+	asmbl_40047	none	Trinity_GG_1773_c0_g1_i2,blat.proc3829871.chain_3318	2	STRG.3243.1,STRG.3243.2,blat.proc3829871.chain_3319	3
scaffold_7	alt_acceptor	8326608	8326609	-	asmbl_49819	none	STRG.9060.1,blat.proc3829891.chain_1315	2	STRG.9060.2	1
scaffold_25	starts_in_intron	3749626	3749626	+	asmbl_33460	none	STRG.27310.2	1	STRG.27310.1,blat.proc3829885.chain_336	2
scaffold_11	spliced_intron	5258781	5258830	+	asmbl_5519	none	STRG.13602.5	1	STRG.13602.2	1
scaffold_16	retained_intron	5395039	5395131	+	asmbl_17007	none	blat.proc3829881.chain_136	1	STRG.19275.1,STRG.19275.2,Trinity_GG_10554_c0_g1_i2,blat.proc3829881.chain_135,blat.proc3829881.chain_137	5
scaffold_20	ends_in_intron	3238944	3238944	+	asmbl_25673	none	blat.proc3829883.chain_139	1	STRG.23032.2	1
scaffold_7	alt_acceptor	8288299	8288300	-	asmbl_49805	none	STRG.9052.2	1	STRG.9052.1,Trinity_GG_22125_c0_g1_i2,blat.proc3829891.chain_1311,blat.proc3829891.chain_1312	4
scaffold_2	spliced_intron	18711549	18711905	+	asmbl_25268,asmbl_25269	none	STRG.2748.1,STRG.2748.2,blat.proc3829871.chain_2923,blat.proc3829871.chain_2924	4	STRG.2748.3,Trinity_GG_1549_c1_g1_i2,blat.proc3829871.chain_2925	3
scaffold_10	retained_intron	3065795	3065893	-	asmbl_3070,asmbl_3071,asmbl_3073	none	STRG.12119.2,blat.proc3829893.chain_570,blat.proc3829893.chain_571,blat.proc3829893.chain_573	4	STRG.12119.3,blat.proc3829893.chain_572	2
scaffold_17	starts_in_intron	11958820	11958820	-	asmbl_19353	none	blat.proc3829897.chain_1672	1	STRG.20711.1,STRG.20711.2,STRG.20711.3,blat.proc3829897.chain_1669,blat.proc3829897.chain_1670,blat.proc3829897.chain_1671	6
scaffold_1	alt_donor	15888312	15888313	+	asmbl_2435	none	STRG.1117.1,Trinity_GG_643_c0_g1_i1,blat.proc3829871.chain_1170	3	STRG.1117.3,Trinity_GG_643_c0_g1_i2,blat.proc3829871.chain_1171	3
scaffold_9	spliced_intron	8939956	8940066	-	asmbl_55112,asmbl_55113,asmbl_55115,asmbl_55116	none	STRG.11268.1,STRG.11268.2,blat.proc3829891.chain_3363,blat.proc3829891.chain_3364	4	blat.proc3829891.chain_3360	1
scaffold_25	alternate_exon	8700440	8702377	-	asmbl_34435	none	STRG.27678.3,blat.proc3829901.chain_953	2	STRG.27678.4,Trinity_GG_32508_c1_g1_i1,blat.proc3829901.chain_955,blat.proc3829901.chain_961	4
scaffold_7	alt_acceptor	18784050	18784051	+	asmbl_51421,asmbl_51423,asmbl_51426	none	STRG.9691.1,STRG.9691.3,blat.proc3829875.chain_2056	3	STRG.9691.2,STRG.9691.4	2
scaffold_15	retained_exon	14633628	14634042	-	asmbl_15749,asmbl_15753	none	STRG.18867.1,STRG.18867.4,blat.proc3829895.chain_3645	3	STRG.18867.3,blat.proc3829895.chain_3643	2
scaffold_5	alt_donor	11449630	11449631	+	asmbl_44413	none	STRG.6401.2	1	STRG.6401.1,blat.proc3829873.chain_2543	2
scaffold_22	retained_intron	10300224	10300260	+	asmbl_29639	none	STRG.25364.1	1	STRG.25364.2	1
scaffold_4	alternate_exon	7013628	7013761	+	asmbl_42774	none	Trinity_GG_2510_c0_g1_i2	1	Trinity_GG_2510_c0_g1_i3	1
scaffold_27	spliced_intron	7522152	7522244	+	asmbl_36424	none	STRG.29096.4	1	STRG.29096.3	1
scaffold_6	ends_in_intron	8560975	8560975	-	asmbl_48503	none	blat.proc3829889.chain_3686	1	STRG.7729.1,blat.proc3829889.chain_3687	2
scaffold_27	alternate_exon	1402121	1402155	+	asmbl_35960	none	STRG.28602.1	1	STRG.28602.2	1
scaffold_11	alt_acceptor	8485383	8485384	+	asmbl_5753	none	STRG.13855.2,Trinity_GG_7642_c0_g1_i1,Trinity_GG_7642_c0_g1_i2,blat.proc3829877.chain_2350	4	STRG.13855.1	1
scaffold_18	alt_acceptor	8913428	8913429	-	asmbl_20078	none	blat.proc3829897.chain_2394	1	STRG.21550.2	1
scaffold_2	ends_in_intron	10123385	10123385	+	asmbl_24730	none	STRG.2199.1	1	Trinity_GG_1246_c0_g1_i3	1
scaffold_9	skipped_exon	6741220	6742496	-	asmbl_55032	none	STRG.11176.1,blat.proc3829891.chain_3303	2	STRG.11176.2,blat.proc3829891.chain_3304	2
scaffold_14	starts_in_intron	15830900	15830900	-	asmbl_13737	none	Trinity_GG_26981_c0_g1_i5	1	STRG.17811.1,STRG.17811.2,blat.proc3829895.chain_2466	3
scaffold_14	starts_in_intron	1611593	1611593	+	asmbl_11803	none	STRG.16791.3,Trinity_GG_9256_c0_g1_i4,blat.proc3829879.chain_1535	3	STRG.16791.1,STRG.16791.2,Trinity_GG_9256_c0_g1_i5,blat.proc3829879.chain_1537,blat.proc3829879.chain_1539	5
scaffold_12	retained_intron	16182802	16183019	-	asmbl_8246	none	STRG.15358.2	1	STRG.15358.1,STRG.15358.3,Trinity_GG_25619_c0_g1_i1,Trinity_GG_25619_c0_g1_i2,blat.proc3829895.chain_84,blat.proc3829895.chain_85	6
scaffold_2	spliced_intron	8787993	8788059	-	asmbl_23355	none	STRG.2128.2,blat.proc3829887.chain_2031	2	STRG.2128.1,Trinity_GG_18201_c0_g1_i3,blat.proc3829887.chain_2028,blat.proc3829887.chain_2029	4
scaffold_322	alt_acceptor	6549	6550	-	asmbl_40915	none	STRG.30256.1	1	STRG.30256.2,STRG.30256.3,STRG.30256.4	3
scaffold_1	retained_intron	12953093	12953198	-	asmbl_789,asmbl_791	none	STRG.920.1,STRG.920.3,blat.proc3829887.chain_814,blat.proc3829887.chain_816	4	STRG.920.2,blat.proc3829887.chain_815	2
scaffold_13	starts_in_intron	7005635	7005635	-	asmbl_9789	none	blat.proc3829895.chain_734	1	STRG.15973.1	1
scaffold_20	ends_in_intron	10514431	10514431	-	asmbl_27033	none	Trinity_GG_30119_c0_g1_i1,blat.proc3829899.chain_523	2	STRG.23576.1,STRG.23576.2,blat.proc3829899.chain_520,blat.proc3829899.chain_522	4
scaffold_19	spliced_intron	13140882	13141025	+	asmbl_22662	none	STRG.22620.3	1	STRG.22620.1,blat.proc3829881.chain_3587	2
scaffold_531	alternate_exon	1763	1835	-	asmbl_46494	none	STRG.30334.1	1	STRG.30334.2	1
scaffold_1	alternate_exon	1326311	1326358	+	asmbl_1470	none	STRG.80.2,blat.proc3829871.chain_104	2	STRG.80.1	1
scaffold_10	alternate_exon	1706200	1706281	-	asmbl_2989	none	STRG.12028.1	1	STRG.12028.2	1
scaffold_4	retained_intron	753564	753737	-	asmbl_41089	none	STRG.4147.1,Trinity_GG_19284_c0_g1_i1,blat.proc3829889.chain_190	3	STRG.4147.2	1
scaffold_26	alt_acceptor	7484719	7484720	-	asmbl_34981	none	STRG.28364.1,blat.proc3829901.chain_1527	2	blat.proc3829901.chain_1526,blat.proc3829901.chain_1528	2
scaffold_4	retained_exon	7316915	7317091	-	asmbl_41446	none	STRG.4569.1	1	STRG.4569.2	1
scaffold_13	retained_intron	8518420	8518604	+	asmbl_11119	none	Trinity_GG_8862_c0_g1_i2,Trinity_GG_8862_c0_g1_i3,blat.proc3829879.chain_859	3	STRG.16113.1,blat.proc3829879.chain_860	2
scaffold_5	starts_in_intron	15042681	15042681	-	asmbl_46023,asmbl_46024	none	STRG.6692.1,blat.proc3829889.chain_2745,blat.proc3829889.chain_2746	3	STRG.6692.2,STRG.6692.3,blat.proc3829889.chain_2739,blat.proc3829889.chain_2741	4
scaffold_13	starts_in_intron	12003241	12003241	+	asmbl_11302	none	Trinity_GG_8988_c1_g1_i1,blat.proc3829879.chain_1100	2	STRG.16324.1,STRG.16324.2,blat.proc3829879.chain_1096,blat.proc3829879.chain_1097	4
scaffold_14	alt_donor	15694153	15694154	-	asmbl_13722	none	blat.proc3829895.chain_2522	1	STRG.17796.2,STRG.17796.3	2
scaffold_19	ends_in_intron	6839971	6839971	-	asmbl_21443	none	Trinity_GG_29388_c0_g1_i4,blat.proc3829897.chain_2947	2	STRG.22196.1,blat.proc3829897.chain_2946	2
scaffold_15	spliced_intron	13041931	13042295	+	asmbl_14559	none	STRG.18730.1,Trinity_GG_10288_c0_g1_i1,blat.proc3829879.chain_3347	3	Trinity_GG_10288_c0_g1_i2,blat.proc3829879.chain_3345,blat.proc3829879.chain_3348	3
scaffold_17	starts_in_intron	13964704	13964704	-	asmbl_19437	none	STRG.20874.3,blat.proc3829897.chain_1760	2	STRG.20874.1,STRG.20874.2,blat.proc3829897.chain_1761,blat.proc3829897.chain_1762	4
scaffold_4	alt_acceptor	14436357	14436358	+	asmbl_43206	none	STRG.5060.2	1	STRG.5060.1,blat.proc3829873.chain_1383	2
scaffold_13	retained_exon	2341003	2341275	+	asmbl_10575,asmbl_10576,asmbl_10578,asmbl_10579,asmbl_10580,asmbl_10581,asmbl_10582,asmbl_10583,asmbl_10584,asmbl_10585,asmbl_10588,asmbl_10589,asmbl_10590	none	STRG.15543.3,STRG.15543.4,STRG.15543.6,STRG.15543.7,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_156,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161,blat.proc3829879.chain_162	13	STRG.15543.9	1
scaffold_8	spliced_intron	9466054	9466151	-	asmbl_53030,asmbl_53033,asmbl_53034,asmbl_53035	none	STRG.10197.1,blat.proc3829891.chain_2403,blat.proc3829891.chain_2405,blat.proc3829891.chain_2406,blat.proc3829891.chain_2407	5	Trinity_GG_22724_c0_g1_i7,blat.proc3829891.chain_2400,blat.proc3829891.chain_2408	3
scaffold_9	alternate_exon	6740695	6743792	-	asmbl_55032,asmbl_55035,asmbl_55036	none	STRG.11176.1,STRG.11176.2,blat.proc3829891.chain_3303,blat.proc3829891.chain_3304	4	STRG.11176.3,blat.proc3829891.chain_3306	2
scaffold_2	alt_donor	10586583	10586584	+	asmbl_24742	none	blat.proc3829871.chain_2312	1	STRG.2216.1,blat.proc3829871.chain_2313	2
scaffold_6	alt_acceptor	9077391	9077392	+	asmbl_47134	none	STRG.7776.1,blat.proc3829875.chain_184	2	STRG.7776.2,blat.proc3829875.chain_183	2
scaffold_12	skipped_exon	8824736	8825679	+	asmbl_8794	none	Trinity_GG_8235_c0_g1_i4,blat.proc3829877.chain_3400	2	STRG.14875.1,Trinity_GG_8235_c0_g1_i1,Trinity_GG_8235_c0_g1_i2,Trinity_GG_8235_c0_g1_i6,blat.proc3829877.chain_3396,blat.proc3829877.chain_3397,blat.proc3829877.chain_3399	7
scaffold_25	alt_donor	7323967	7323968	-	asmbl_34369	none	STRG.27566.4	1	STRG.27566.1,STRG.27566.2,blat.proc3829885.chain_601	3
scaffold_12	spliced_intron	7172399	7173215	+	asmbl_8684	none	STRG.14775.1	1	blat.proc3829877.chain_3243	1
scaffold_10	retained_intron	6671059	6671455	-	asmbl_3403,asmbl_3404	none	STRG.12494.6,blat.proc3829893.chain_1029	2	blat.proc3829893.chain_1032	1
scaffold_7	ends_in_intron	17810768	17810768	+	asmbl_51389	none	blat.proc3829875.chain_2101	1	STRG.9616.1,blat.proc3829875.chain_2097,blat.proc3829875.chain_2098,blat.proc3829875.chain_2099,blat.proc3829875.chain_2100,blat.proc3829875.chain_2102,blat.proc3829875.chain_2104,blat.proc3829875.chain_2105	8
scaffold_27	retained_intron	3000034	3000124	+	asmbl_36114,asmbl_36120	none	blat.proc3829885.chain_1844,blat.proc3829885.chain_1848	2	STRG.28767.1,STRG.28767.2,STRG.28767.3,STRG.28767.4,STRG.28767.5,blat.proc3829885.chain_1838,blat.proc3829885.chain_1839,blat.proc3829885.chain_1841,blat.proc3829885.chain_1842,blat.proc3829885.chain_1843,blat.proc3829885.chain_1847,blat.proc3829885.chain_1849	12
scaffold_3	retained_exon	10275591	10275683	+	asmbl_40205	none	STRG.3461.2,blat.proc3829871.chain_3625	2	STRG.3461.1,STRG.3461.3,STRG.3461.4,blat.proc3829871.chain_3621,blat.proc3829871.chain_3622,blat.proc3829871.chain_3624	6
scaffold_1	alt_donor	11800707	11800708	-	asmbl_677	none	STRG.794.3,Trinity_GG_17439_c0_g1_i4,blat.proc3829887.chain_689	3	STRG.794.1	1
scaffold_5	retained_intron	188214	188267	+	asmbl_43748,asmbl_43749	none	STRG.5581.1,STRG.5581.2	2	STRG.5581.3,STRG.5581.4	2
scaffold_24	spliced_intron	3328681	3328826	-	asmbl_32804	none	STRG.26511.1,blat.proc3829899.chain_3538	2	blat.proc3829899.chain_3537	1
scaffold_25	starts_in_intron	8706600	8706600	+	asmbl_33748,asmbl_33751	none	blat.proc3829885.chain_692,blat.proc3829885.chain_695	2	STRG.27679.3,blat.proc3829885.chain_698	2
scaffold_8	starts_in_intron	9936516	9936516	-	asmbl_53076	none	blat.proc3829891.chain_2425	1	STRG.10241.1,STRG.10241.2,blat.proc3829891.chain_2423,blat.proc3829891.chain_2424	4
scaffold_20	spliced_intron	7473157	7473239	-	asmbl_26825,asmbl_26827,asmbl_26828,asmbl_26829,asmbl_26830,asmbl_26831,asmbl_26832	none	STRG.23308.1,blat.proc3829899.chain_389,blat.proc3829899.chain_391,blat.proc3829899.chain_393,blat.proc3829899.chain_394,blat.proc3829899.chain_396,blat.proc3829899.chain_399,blat.proc3829899.chain_401	8	blat.proc3829899.chain_395	1
scaffold_5	skipped_exon	2166397	2167500	-	asmbl_45264	none	STRG.5744.1,blat.proc3829889.chain_1867	2	STRG.5744.2,STRG.5744.3	2
scaffold_13	starts_in_intron	4378143	4378143	+	asmbl_10770	none	STRG.15749.3	1	STRG.15749.1,STRG.15749.2,blat.proc3829879.chain_404	3
scaffold_16	spliced_intron	4597484	4597636	-	asmbl_16237	none	STRG.19233.1,blat.proc3829897.chain_273	2	blat.proc3829897.chain_272	1
scaffold_18	ends_in_intron	371702	371702	-	asmbl_19613	none	Trinity_GG_28783_c4_g1_i1,blat.proc3829897.chain_1883	2	STRG.20979.1,blat.proc3829897.chain_1875,blat.proc3829897.chain_1876,blat.proc3829897.chain_1878,blat.proc3829897.chain_1879	5
scaffold_6	alt_acceptor	15697267	15697268	+	asmbl_47608	none	STRG.8303.2,blat.proc3829875.chain_699	2	STRG.8303.1,blat.proc3829875.chain_700	2
scaffold_1	ends_in_intron	6253989	6253989	-	asmbl_337	none	STRG.419.2	1	STRG.419.1,Trinity_GG_17236_c0_g1_i1,Trinity_GG_17236_c0_g1_i4,blat.proc3829887.chain_290	4
scaffold_2	skipped_exon	3898325	3899361	+	asmbl_24337	none	STRG.1831.1,blat.proc3829871.chain_1839	2	STRG.1831.2,blat.proc3829871.chain_1842	2
scaffold_12	skipped_exon	10605684	10607034	+	asmbl_8910,asmbl_8912	none	STRG.15020.1,STRG.15020.4,blat.proc3829877.chain_3505,blat.proc3829877.chain_3508	4	STRG.15020.2,blat.proc3829877.chain_3509	2
scaffold_7	spliced_intron	1236503	1236590	+	asmbl_50469,asmbl_50470,asmbl_50472,asmbl_50473,asmbl_50474,asmbl_50479	none	STRG.8627.2,Trinity_GG_4740_c1_g1_i2	2	STRG.8627.3,STRG.8627.5,STRG.8627.6,STRG.8627.7,STRG.8627.9,Trinity_GG_4740_c1_g1_i1	6
scaffold_3	retained_intron	5129399	5129760	-	asmbl_38787	none	STRG.3205.1,blat.proc3829887.chain_2931	2	STRG.3205.2,blat.proc3829887.chain_2930	2
scaffold_18	spliced_intron	7686561	7686884	+	asmbl_20804,asmbl_20806	none	STRG.21464.1,Trinity_GG_11863_c0_g1_i8,blat.proc3829881.chain_2437,blat.proc3829881.chain_2439	4	STRG.21464.2,STRG.21464.4,Trinity_GG_11863_c0_g1_i9,blat.proc3829881.chain_2433,blat.proc3829881.chain_2434,blat.proc3829881.chain_2435,blat.proc3829881.chain_2436	7
scaffold_16	alternate_exon	8642666	8642759	+	asmbl_17231	none	STRG.19479.2	1	STRG.19479.1,STRG.19479.3,STRG.19479.4,STRG.19479.5,blat.proc3829881.chain_361,blat.proc3829881.chain_362	6
scaffold_28	starts_in_intron	7721056	7721056	+	asmbl_38402,asmbl_38403	none	Trinity_GG_16523_c1_g2_i1,blat.proc3829885.chain_2928	2	STRG.29824.1,Trinity_GG_16523_c1_g1_i1,Trinity_GG_16523_c1_g1_i2,blat.proc3829885.chain_2922,blat.proc3829885.chain_2923,blat.proc3829885.chain_2926	6
scaffold_7	alternate_exon	1510891	1511259	+	asmbl_50490	none	STRG.8635.1,Trinity_GG_4714_c0_g1_i1,blat.proc3829875.chain_989	3	STRG.8635.2	1
scaffold_12	spliced_intron	4623882	4625218	-	asmbl_7561,asmbl_7562	none	STRG.14634.1,STRG.14634.3	2	STRG.14634.2,Trinity_GG_25176_c0_g1_i3,Trinity_GG_25176_c2_g1_i1,blat.proc3829893.chain_3035,blat.proc3829893.chain_3037	5
scaffold_19	alt_acceptor	13372901	13372902	+	asmbl_22685	none	STRG.22644.2	1	STRG.22644.1,STRG.22644.3,Trinity_GG_12484_c0_g1_i2,blat.proc3829881.chain_3530	4
scaffold_1	alt_donor	19006429	19006430	+	asmbl_2561	none	STRG.1322.3	1	STRG.1322.1,STRG.1322.2	2
scaffold_5	spliced_intron	9085103	9085212	+	asmbl_44259,asmbl_44263,asmbl_44264,asmbl_44265,asmbl_44266,asmbl_44267,asmbl_44268,asmbl_44269,asmbl_44270	none	STRG.6237.1,STRG.6237.2,STRG.6237.3,STRG.6237.4,STRG.6237.5,blat.proc3829873.chain_2419,blat.proc3829873.chain_2421,blat.proc3829873.chain_2422,blat.proc3829873.chain_2423,blat.proc3829873.chain_2426	10	blat.proc3829873.chain_2418,blat.proc3829873.chain_2424	2
scaffold_28	ends_in_intron	7878164	7878164	-	asmbl_37759	none	blat.proc3829901.chain_2978	1	STRG.29846.1,blat.proc3829901.chain_2975,blat.proc3829901.chain_2977	3
scaffold_13	alt_donor	10237093	10237094	-	asmbl_10014,asmbl_10016	none	STRG.16243.1,STRG.16243.3,blat.proc3829895.chain_977	3	STRG.16243.4	1
scaffold_9	skipped_exon	9614148	9615590	-	asmbl_55185	none	STRG.11319.2	1	STRG.11319.3,blat.proc3829891.chain_3436	2
scaffold_4	retained_intron	17568123	17568275	-	asmbl_42037	none	blat.proc3829889.chain_1334	1	STRG.5346.1,STRG.5346.2	2
scaffold_18	alternate_exon	9684581	9684605	-	asmbl_20111	none	STRG.21570.3	1	STRG.21570.1,STRG.21570.2,blat.proc3829897.chain_2417	3
scaffold_6	alt_donor	7937837	7937838	-	asmbl_48453	none	STRG.7666.4	1	STRG.7666.2,STRG.7666.3,blat.proc3829889.chain_3704	3
scaffold_4	alt_donor	6948539	6948540	+	asmbl_42764	none	Trinity_GG_2515_c0_g1_i3,blat.proc3829873.chain_900	2	STRG.4536.1,STRG.4536.2,STRG.4536.3,Trinity_GG_2515_c0_g1_i7,blat.proc3829873.chain_899,blat.proc3829873.chain_901,blat.proc3829873.chain_902,blat.proc3829873.chain_903,blat.proc3829873.chain_905	9
scaffold_5	skipped_exon	5051252	5053991	+	asmbl_44000,asmbl_44002,asmbl_44003	none	STRG.5949.2,STRG.5949.3,STRG.5949.4,blat.proc3829873.chain_2144	4	STRG.5949.1,blat.proc3829873.chain_2145	2
scaffold_11	starts_in_intron	9724780	9724780	+	asmbl_5855	none	Trinity_GG_7707_c0_g1_i4,blat.proc3829877.chain_2466	2	STRG.13976.1,STRG.13976.2,Trinity_GG_7707_c0_g1_i1,blat.proc3829877.chain_2467,blat.proc3829877.chain_2468	5
scaffold_21	skipped_exon	2952933	2953416	+	asmbl_28450	none	STRG.23906.1,blat.proc3829883.chain_1035	2	STRG.23906.2,blat.proc3829883.chain_1037	2
scaffold_3	retained_exon	2951964	2952335	+	asmbl_39882	none	STRG.3052.1	1	STRG.3052.2	1
scaffold_10	retained_intron	1425809	1425931	+	asmbl_4215,asmbl_4217,asmbl_4219,asmbl_4220	none	STRG.12005.2,STRG.12005.3,Trinity_GG_6688_c0_g1_i4,Trinity_GG_6688_c0_g1_i8,blat.proc3829877.chain_727,blat.proc3829877.chain_728,blat.proc3829877.chain_732	7	blat.proc3829877.chain_733	1
scaffold_10	alt_donor	918468	918469	+	asmbl_4159,asmbl_4161,asmbl_4163	none	STRG.11958.1,blat.proc3829877.chain_641,blat.proc3829877.chain_642,blat.proc3829877.chain_643,blat.proc3829877.chain_645	5	STRG.11958.2,blat.proc3829877.chain_644	2
scaffold_8	spliced_intron	17284349	17284435	-	asmbl_53447	none	STRG.10643.1,blat.proc3829891.chain_2763	2	blat.proc3829891.chain_2764	1
scaffold_16	ends_in_intron	4910911	4910911	-	asmbl_16256	none	Trinity_GG_27837_c0_g1_i2,blat.proc3829897.chain_311	2	STRG.19258.1,STRG.19258.2,STRG.19258.3,Trinity_GG_27837_c0_g1_i3,blat.proc3829897.chain_313	5
scaffold_11	alt_acceptor	2455358	2455359	-	asmbl_6478	none	STRG.13386.2,blat.proc3829893.chain_1860	2	STRG.13386.1,blat.proc3829893.chain_1859	2
scaffold_23	spliced_intron	10990921	10990994	-	asmbl_31897	none	STRG.26288.1,blat.proc3829899.chain_3317	2	blat.proc3829899.chain_3315	1
scaffold_5	retained_intron	1504160	1504271	-	asmbl_45245	none	STRG.5702.2	1	STRG.5702.1,blat.proc3829873.chain_1865,blat.proc3829889.chain_1826	3
scaffold_5	alternate_exon	16846236	16849313	-	asmbl_46158	none	STRG.6862.1,Trinity_GG_20825_c0_g1_i1,blat.proc3829889.chain_2851,blat.proc3829889.chain_2857	4	STRG.6862.2,Trinity_GG_20830_c1_g1_i1,blat.proc3829889.chain_2856,blat.proc3829889.chain_2858	4
scaffold_6	retained_exon	878681	878698	+	asmbl_46637	none	STRG.7151.3	1	STRG.7151.2	1
scaffold_12	starts_in_intron	7972314	7972314	+	asmbl_8770,asmbl_8771	none	Trinity_GG_8212_c2_g1_i1,blat.proc3829877.chain_3363	2	STRG.14847.1,blat.proc3829877.chain_3357,blat.proc3829877.chain_3358	3
scaffold_25	starts_in_intron	101181	101181	+	asmbl_33310	none	blat.proc3829885.chain_153	1	STRG.27024.1,Trinity_GG_14936_c0_g1_i1,blat.proc3829885.chain_152	3
scaffold_25	starts_in_intron	8698368	8698368	-	asmbl_34434	none	STRG.27678.1,blat.proc3829901.chain_956,blat.proc3829901.chain_958	3	STRG.27678.2,STRG.27678.3,STRG.27678.4,STRG.27678.5,blat.proc3829901.chain_953,blat.proc3829901.chain_954,blat.proc3829901.chain_955,blat.proc3829901.chain_957,blat.proc3829901.chain_960	9
scaffold_2	alt_acceptor	3771256	3771257	+	asmbl_24335	none	STRG.1809.1	1	blat.proc3829871.chain_1873	1
scaffold_6	starts_in_intron	4311221	4311221	+	asmbl_46820	none	Trinity_GG_4056_c0_g1_i2,blat.proc3829873.chain_3529	2	STRG.7400.1,blat.proc3829873.chain_3530	2
scaffold_7	alt_donor	1236503	1236504	+	asmbl_50470,asmbl_50474,asmbl_50479	none	STRG.8627.2,Trinity_GG_4740_c0_g1_i16,Trinity_GG_4740_c1_g1_i2,blat.proc3829875.chain_1042,blat.proc3829875.chain_1043,blat.proc3829875.chain_1049	6	STRG.8627.8	1
scaffold_10	ends_in_intron	643230	643230	-	asmbl_2900	none	Trinity_GG_23670_c0_g1_i2,blat.proc3829893.chain_416	2	STRG.11934.1,blat.proc3829893.chain_414	2
scaffold_10	alt_donor	4058494	4058495	-	asmbl_3168	none	STRG.12237.6,blat.proc3829893.chain_707	2	STRG.12237.7,Trinity_GG_23849_c2_g1_i1,blat.proc3829893.chain_711,blat.proc3829893.chain_714	4
scaffold_3	starts_in_intron	10946666	10946666	-	asmbl_39081	none	blat.proc3829887.chain_3309	1	STRG.3536.1,STRG.3536.2,blat.proc3829887.chain_3310,blat.proc3829887.chain_3313	4
scaffold_12	skipped_exon	7962352	7963104	+	asmbl_8766	none	STRG.14845.3	1	STRG.14845.1,STRG.14845.2,blat.proc3829877.chain_3276,blat.proc3829877.chain_3277	4
scaffold_2	alt_acceptor	7119293	7119294	+	asmbl_24559	none	STRG.2045.3	1	STRG.2045.1,STRG.2045.2,Trinity_GG_1155_c0_g1_i1,Trinity_GG_1155_c0_g1_i2,blat.proc3829871.chain_2116,blat.proc3829871.chain_2117	6
scaffold_28	ends_in_intron	571709	571709	-	asmbl_37242	none	blat.proc3829901.chain_2357	1	STRG.29265.1,blat.proc3829901.chain_2355	2
scaffold_15	spliced_intron	8628465	8629828	-	asmbl_15370	none	STRG.18399.1,blat.proc3829895.chain_3199,blat.proc3829895.chain_3200	3	Trinity_GG_27371_c0_g1_i1,Trinity_GG_27371_c0_g1_i2,Trinity_GG_27371_c0_g1_i3,blat.proc3829895.chain_3196,blat.proc3829895.chain_3197,blat.proc3829895.chain_3198	6
scaffold_15	alternate_exon	382124	382156	+	asmbl_13906	none	STRG.17877.3,blat.proc3829879.chain_2549	2	STRG.17877.1	1
scaffold_5	alt_donor	2167499	2167500	-	asmbl_45264	none	STRG.5744.1,blat.proc3829889.chain_1867	2	STRG.5744.3	1
scaffold_10	starts_in_intron	12894168	12894168	-	asmbl_3741	none	blat.proc3829893.chain_1338	1	STRG.12877.1,blat.proc3829893.chain_1336,blat.proc3829893.chain_1337,blat.proc3829893.chain_1339	4
scaffold_9	retained_exon	644643	644687	+	asmbl_53764	none	STRG.10785.3	1	STRG.10785.4	1
scaffold_23	starts_in_intron	2315718	2315718	+	asmbl_30692	none	Trinity_GG_14122_c0_g1_i3,blat.proc3829883.chain_2487	2	STRG.25680.1,Trinity_GG_14122_c0_g1_i2,blat.proc3829883.chain_2486	3
scaffold_28	alt_acceptor	1641122	1641123	+	asmbl_38010,asmbl_38011,asmbl_38012	none	STRG.29333.1,STRG.29333.3,blat.proc3829885.chain_2464,blat.proc3829885.chain_2465	4	STRG.29333.2	1
scaffold_13	retained_exon	400050	400121	-	asmbl_9305,asmbl_9307,asmbl_9308,asmbl_9309,asmbl_9310,asmbl_9311,asmbl_9314,asmbl_9315,asmbl_9316,asmbl_9317,asmbl_9318	none	STRG.15428.1,STRG.15428.2,STRG.15428.3,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i7,Trinity_GG_25691_c0_g1_i8,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_220,blat.proc3829895.chain_221,blat.proc3829895.chain_222,blat.proc3829895.chain_224,blat.proc3829895.chain_226,blat.proc3829895.chain_230,blat.proc3829895.chain_232,blat.proc3829895.chain_233	17	Trinity_GG_25691_c0_g1_i10,blat.proc3829895.chain_228	2
scaffold_7	ends_in_intron	7506928	7506928	-	asmbl_49759	none	Trinity_GG_22101_c0_g1_i1,blat.proc3829891.chain_1266	2	STRG.9000.1,blat.proc3829891.chain_1267	2
scaffold_4	spliced_intron	10872269	10872362	-	asmbl_41604,asmbl_41605,asmbl_41606	none	STRG.4807.1,blat.proc3829889.chain_807,blat.proc3829889.chain_808,blat.proc3829889.chain_809	4	blat.proc3829889.chain_806	1
scaffold_15	retained_intron	13325950	13326951	+	asmbl_14573,asmbl_14574,asmbl_14577,asmbl_14578,asmbl_14579,asmbl_14582	none	Trinity_GG_10264_c0_g1_i4,Trinity_GG_10264_c0_g1_i6,blat.proc3829879.chain_3296,blat.proc3829879.chain_3297,blat.proc3829879.chain_3298,blat.proc3829879.chain_3299,blat.proc3829879.chain_3303,blat.proc3829879.chain_3304	8	STRG.18763.1,Trinity_GG_10264_c0_g1_i2,blat.proc3829879.chain_3300,blat.proc3829879.chain_3301,blat.proc3829879.chain_3302	5
scaffold_13	starts_in_intron	6289750	6289750	+	asmbl_10902,asmbl_10906	none	blat.proc3829879.chain_561,blat.proc3829879.chain_562	2	STRG.15910.1,blat.proc3829879.chain_559,blat.proc3829879.chain_560	3
scaffold_1	alt_donor	20348551	20348552	+	asmbl_2603	none	STRG.1398.4,blat.proc3829871.chain_1452	2	STRG.1398.2,STRG.1398.3,STRG.1398.6	3
scaffold_1	ends_in_intron	915122	915122	+	asmbl_1435	none	Trinity_GG_3_c0_g1_i2,blat.proc3829871.chain_3	2	STRG.46.1,Trinity_GG_3_c0_g1_i1,blat.proc3829871.chain_4	3
scaffold_16	starts_in_intron	1787370	1787370	-	asmbl_16124	none	blat.proc3829897.chain_97	1	STRG.19096.1,blat.proc3829897.chain_98	2
scaffold_17	alternate_exon	2355867	2360148	+	asmbl_17768,asmbl_17770	none	STRG.20017.5,STRG.20017.7,Trinity_GG_10969_c0_g1_i1,blat.proc3829881.chain_850	4	STRG.20017.3	1
scaffold_2	alt_acceptor	888192	888193	+	asmbl_24148,asmbl_24150	none	STRG.1564.2,STRG.1564.5,Trinity_GG_856_c1_g1_i1,blat.proc3829871.chain_1551	4	STRG.1564.1,STRG.1564.3,Trinity_GG_856_c1_g1_i3,blat.proc3829871.chain_1552	4
scaffold_3	alternate_exon	16777554	16779862	+	asmbl_40593	none	STRG.3931.1,blat.proc3829873.chain_264	2	STRG.3931.2	1
scaffold_15	retained_exon	7303426	7303476	+	asmbl_14232	none	STRG.18319.1,blat.proc3829879.chain_2936	2	STRG.18319.2,blat.proc3829879.chain_2937	2
scaffold_7	alt_donor	12346463	12346464	+	asmbl_51125	none	STRG.9317.2	1	STRG.9317.1,blat.proc3829875.chain_1785	2
scaffold_24	spliced_intron	6225543	6226490	-	asmbl_32935	none	Trinity_GG_31899_c0_g1_i9,blat.proc3829899.chain_3692	2	STRG.26664.2,blat.proc3829899.chain_3687,blat.proc3829899.chain_3690,blat.proc3829899.chain_3693,blat.proc3829899.chain_3695,blat.proc3829899.chain_3696	6
scaffold_15	spliced_intron	12000408	12000658	-	asmbl_15567	none	blat.proc3829895.chain_3417	1	Trinity_GG_27487_c0_g1_i4,blat.proc3829895.chain_3419,blat.proc3829895.chain_3421	3
scaffold_16	retained_intron	744159	744656	-	asmbl_16068,asmbl_16071	none	blat.proc3829897.chain_14,blat.proc3829897.chain_9	2	STRG.19044.2,blat.proc3829897.chain_11	2
scaffold_3	retained_intron	19887827	19887892	-	asmbl_39622	none	STRG.4102.2,Trinity_GG_19279_c1_g1_i1,blat.proc3829889.chain_172	3	STRG.4102.3	1
scaffold_8	starts_in_intron	18541826	18541826	+	asmbl_52558	none	Trinity_GG_5925_c0_g1_i2,blat.proc3829875.chain_3173	2	STRG.10744.2,blat.proc3829875.chain_3175	2
scaffold_20	alt_acceptor	1489803	1489804	+	asmbl_25571,asmbl_25573	none	STRG.22855.2,STRG.22855.5	2	STRG.22855.3	1
scaffold_27	ends_in_intron	2795593	2795593	+	asmbl_36068,asmbl_36072	none	STRG.28740.2,blat.proc3829885.chain_1814	2	STRG.28740.1,blat.proc3829885.chain_1811,blat.proc3829885.chain_1813	3
scaffold_1	alt_donor	974812	974813	-	asmbl_39	none	STRG.57.2	1	Trinity_GG_17049_c1_g1_i1,blat.proc3829885.chain_3722	2
scaffold_2	alternate_exon	6517577	6517628	+	asmbl_24501	none	STRG.2022.5,blat.proc3829871.chain_2079	2	STRG.2022.1,STRG.2022.2,STRG.2022.3,STRG.2022.4,Trinity_GG_1139_c0_g1_i2	5
scaffold_10	skipped_exon	17683194	17684814	+	asmbl_5063	none	STRG.13207.2	1	STRG.13207.1	1
scaffold_11	spliced_intron	14532679	14532928	+	asmbl_6067	none	STRG.14239.1,Trinity_GG_7860_c0_g1_i2,blat.proc3829877.chain_2747	3	STRG.14239.2,STRG.14239.4,Trinity_GG_7860_c0_g1_i7,blat.proc3829877.chain_2743,blat.proc3829877.chain_2744,blat.proc3829877.chain_2746,blat.proc3829877.chain_2748	7
scaffold_23	ends_in_intron	10021454	10021454	+	asmbl_31121	none	blat.proc3829883.chain_3098	1	STRG.26185.1,blat.proc3829883.chain_3095,blat.proc3829883.chain_3096	3
scaffold_16	retained_intron	12019045	12019148	+	asmbl_17430	none	Trinity_GG_10822_c0_g1_i4,blat.proc3829881.chain_610	2	STRG.19717.1,STRG.19717.3,Trinity_GG_10822_c0_g1_i3,blat.proc3829881.chain_608,blat.proc3829881.chain_609	5
scaffold_14	spliced_intron	3588641	3588784	+	asmbl_11929,asmbl_11930	none	STRG.16927.2,blat.proc3829879.chain_1658	2	STRG.16927.1,STRG.16927.4,blat.proc3829879.chain_1656	3
scaffold_2	starts_in_intron	928943	928943	+	asmbl_24178	none	blat.proc3829871.chain_1541	1	STRG.1569.1,STRG.1569.3,STRG.1569.4,blat.proc3829871.chain_1537,blat.proc3829871.chain_1542	5
scaffold_6	alternate_exon	15793520	15796187	+	asmbl_47611	none	STRG.8309.1,blat.proc3829875.chain_649	2	STRG.8309.3,blat.proc3829875.chain_650	2
scaffold_21	alt_donor	8173425	8173426	+	asmbl_28807	none	STRG.24337.1	1	STRG.24337.2,blat.proc3829883.chain_1467	2
scaffold_8	ends_in_intron	6904041	6904041	+	asmbl_51955	none	blat.proc3829875.chain_2537	1	STRG.10042.1,STRG.10042.2,STRG.10042.3,blat.proc3829875.chain_2536,blat.proc3829875.chain_2541	5
scaffold_9	ends_in_intron	17610562	17610562	-	asmbl_55622,asmbl_55624	none	STRG.11843.3,STRG.11843.4,Trinity_GG_23540_c0_g2_i1,blat.proc3829893.chain_187	4	STRG.11843.1,STRG.11843.2,blat.proc3829893.chain_182,blat.proc3829893.chain_183,blat.proc3829893.chain_185	5
scaffold_8	alt_donor	18249900	18249901	-	asmbl_53534,asmbl_53536,asmbl_53541	none	STRG.10723.2,STRG.10723.5,blat.proc3829891.chain_2919,blat.proc3829891.chain_2922	4	STRG.10723.3,STRG.10723.4,blat.proc3829891.chain_2921,blat.proc3829891.chain_2923	4
scaffold_1	spliced_intron	1982208	1983075	-	asmbl_97	none	blat.proc3829887.chain_11	1	blat.proc3829887.chain_12	1
scaffold_3	spliced_intron	12445250	12446860	+	asmbl_40358	none	blat.proc3829873.chain_53	1	STRG.3636.1,Trinity_GG_2050_c0_g1_i1,blat.proc3829873.chain_54	3
scaffold_13	retained_exon	521956	522039	+	asmbl_10454,asmbl_10456,asmbl_10457,asmbl_10458,asmbl_10459,asmbl_10460,asmbl_10461	none	STRG.15434.1,STRG.15434.2,STRG.15434.3,STRG.15434.4,STRG.15434.5,Trinity_GG_8491_c0_g1_i1,blat.proc3829879.chain_110,blat.proc3829879.chain_111,blat.proc3829879.chain_114,blat.proc3829879.chain_115,blat.proc3829879.chain_116	11	Trinity_GG_8491_c0_g1_i4,blat.proc3829879.chain_112	2
scaffold_26	starts_in_intron	5557703	5557703	+	asmbl_35554	none	STRG.28248.2	1	STRG.28248.1,blat.proc3829885.chain_1208	2
scaffold_26	retained_intron	2253736	2255266	+	asmbl_35268	none	blat.proc3829885.chain_935	1	STRG.27939.1,STRG.27939.2,blat.proc3829885.chain_934	3
scaffold_9	alt_acceptor	11876466	11876467	+	asmbl_54373	none	STRG.11498.1	1	Trinity_GG_6418_c0_g1_i2,blat.proc3829877.chain_280	2
scaffold_10	spliced_intron	3510530	3510584	+	asmbl_4332	none	STRG.12181.2	1	STRG.12181.1,blat.proc3829877.chain_826,blat.proc3829877.chain_827,blat.proc3829877.chain_828	4
scaffold_14	skipped_exon	15585029	15586492	+	asmbl_12613,asmbl_12614	none	STRG.17785.1,STRG.17785.2	2	STRG.17785.3,STRG.17785.4	2
scaffold_21	alt_donor	8519302	8519303	-	asmbl_27945	none	STRG.24362.1,blat.proc3829899.chain_1404	2	STRG.24362.2,blat.proc3829899.chain_1405	2
scaffold_11	starts_in_intron	4675175	4675175	-	asmbl_6590,asmbl_6592	none	STRG.13547.4,blat.proc3829893.chain_1972	2	STRG.13547.1,STRG.13547.2,STRG.13547.3,STRG.13547.5,blat.proc3829893.chain_1970,blat.proc3829893.chain_1971,blat.proc3829893.chain_1973	7
scaffold_8	alt_acceptor	7514967	7514968	-	asmbl_52910	none	STRG.10073.2	1	STRG.10073.1,blat.proc3829891.chain_2188	2
scaffold_13	skipped_exon	394206	395582	-	asmbl_9310,asmbl_9311,asmbl_9318	none	STRG.15428.3,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_221,blat.proc3829895.chain_224	5	STRG.15428.1,STRG.15428.2,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i8,blat.proc3829895.chain_226,blat.proc3829895.chain_230,blat.proc3829895.chain_233	8
scaffold_22	alternate_exon	11704071	11704232	+	asmbl_29706	none	STRG.25501.2	1	STRG.25501.1,Trinity_GG_14081_c0_g1_i1,blat.proc3829883.chain_2430	3
scaffold_22	alternate_exon	5933014	5934187	+	asmbl_29366	none	STRG.24924.2,Trinity_GG_13747_c1_g1_i2,blat.proc3829883.chain_1917	3	STRG.24924.3	1
scaffold_14	alternate_exon	11755030	11755193	+	asmbl_12383	none	STRG.17516.1,blat.proc3829879.chain_2185	2	STRG.17516.2,blat.proc3829879.chain_2186	2
scaffold_8	spliced_intron	17839229	17839334	+	asmbl_52507	none	STRG.10685.1,Trinity_GG_5887_c0_g1_i3,blat.proc3829875.chain_3094	3	Trinity_GG_5887_c0_g1_i1,blat.proc3829875.chain_3093	2
scaffold_2	retained_exon	9160014	9160085	+	asmbl_24706	none	STRG.2163.2	1	STRG.2163.1,Trinity_GG_1225_c0_g1_i1,Trinity_GG_1225_c0_g1_i2,blat.proc3829871.chain_2280,blat.proc3829871.chain_2281	5
scaffold_8	alternate_exon	11826620	11829974	+	asmbl_52262	none	STRG.10379.1	1	Trinity_GG_5799_c0_g1_i1,blat.proc3829875.chain_2919	2
scaffold_8	starts_in_intron	2686894	2686894	+	asmbl_51723	none	STRG.9799.2,Trinity_GG_5401_c1_g1_i2,blat.proc3829875.chain_2212	3	STRG.9799.1,blat.proc3829875.chain_2213	2
scaffold_20	alt_acceptor	631183	631184	-	asmbl_26436	none	STRG.22751.1,blat.proc3829897.chain_3522	2	STRG.22751.3,blat.proc3829897.chain_3523	2
scaffold_21	alt_acceptor	10098175	10098176	+	asmbl_28867	none	STRG.24457.1	1	STRG.24457.2	1
scaffold_16	starts_in_intron	9031942	9031942	+	asmbl_17257	none	blat.proc3829881.chain_389	1	STRG.19501.1,STRG.19501.2,STRG.19501.3,STRG.19501.4,blat.proc3829881.chain_387,blat.proc3829881.chain_388,blat.proc3829881.chain_391	7
scaffold_4	alt_donor	1332449	1332450	-	asmbl_41108,asmbl_41110,asmbl_41112,asmbl_41113	none	STRG.4173.2,STRG.4173.4,blat.proc3829889.chain_299,blat.proc3829889.chain_300,blat.proc3829889.chain_301,blat.proc3829889.chain_302	6	STRG.4173.3,STRG.4173.5	2
scaffold_21	retained_intron	6191859	6192384	+	asmbl_28639	none	Trinity_GG_13323_c0_g1_i3,blat.proc3829883.chain_1191	2	STRG.24137.1,blat.proc3829883.chain_1190,blat.proc3829883.chain_1192	3
scaffold_1	ends_in_intron	3620743	3620743	+	asmbl_1612	none	blat.proc3829871.chain_279	1	STRG.224.1,blat.proc3829871.chain_280,blat.proc3829871.chain_282	3
scaffold_14	alt_acceptor	1590384	1590385	-	asmbl_12872,asmbl_12873,asmbl_12874,asmbl_12878	none	STRG.16786.1,STRG.16786.2,STRG.16786.3,STRG.16786.5,blat.proc3829895.chain_1442,blat.proc3829895.chain_1443,blat.proc3829895.chain_1444	7	STRG.16786.4	1
scaffold_4	alt_donor	9514269	9514270	-	asmbl_41555	none	STRG.4730.2	1	STRG.4730.1,blat.proc3829889.chain_816	2
scaffold_8	retained_intron	6309864	6309987	+	asmbl_51949	none	blat.proc3829875.chain_2464	1	STRG.10028.1,Trinity_GG_5540_c0_g2_i1,blat.proc3829875.chain_2465	3
scaffold_9	ends_in_intron	10908685	10908685	+	asmbl_54290	none	Trinity_GG_6354_c0_g1_i2,blat.proc3829877.chain_174	2	STRG.11390.1,blat.proc3829877.chain_173	2
scaffold_24	ends_in_intron	10583650	10583650	-	asmbl_33200	none	blat.proc3829901.chain_302	1	STRG.26995.1	1
scaffold_22	alt_donor	4239757	4239758	-	asmbl_29984	none	blat.proc3829899.chain_1980	1	STRG.24838.2,Trinity_GG_30899_c1_g1_i5,blat.proc3829899.chain_1982	3
scaffold_21	starts_in_intron	11272908	11272908	-	asmbl_28139	none	blat.proc3829899.chain_1687	1	STRG.24588.1,STRG.24588.2,blat.proc3829899.chain_1688,blat.proc3829899.chain_1689,blat.proc3829899.chain_1692	5
scaffold_10	retained_exon	1112659	1112772	+	asmbl_4185	none	STRG.11989.1,Trinity_GG_6668_c0_g1_i2,blat.proc3829877.chain_692	3	STRG.11989.2,Trinity_GG_6668_c0_g1_i1,blat.proc3829877.chain_691	3
scaffold_27	ends_in_intron	9110151	9110151	+	asmbl_36461	none	Trinity_GG_16183_c1_g1_i1	1	blat.proc3829885.chain_2318,blat.proc3829885.chain_2319,blat.proc3829885.chain_2320	3
scaffold_6	starts_in_intron	12868549	12868549	+	asmbl_47372	none	Trinity_GG_4363_c0_g1_i3,blat.proc3829875.chain_361	2	STRG.8038.1,blat.proc3829875.chain_363	2
scaffold_16	starts_in_intron	7217914	7217914	-	asmbl_16343	none	blat.proc3829897.chain_414	1	STRG.19382.1,STRG.19382.2,STRG.19382.3,STRG.19382.4,STRG.19382.5,STRG.19382.6	6
scaffold_2	retained_intron	5440602	5440711	+	asmbl_24444	none	STRG.1951.1,blat.proc3829871.chain_1990	2	STRG.1951.3	1
scaffold_17	retained_intron	14633366	14633405	+	asmbl_18533	none	STRG.20934.2	1	STRG.20934.1	1
scaffold_27	alternate_exon	5682001	5682120	+	asmbl_36317	none	STRG.28956.4,blat.proc3829885.chain_1999	2	STRG.28956.1,STRG.28956.2,STRG.28956.3,blat.proc3829885.chain_1994,blat.proc3829885.chain_1996,blat.proc3829885.chain_1997,blat.proc3829885.chain_1998	7
scaffold_14	ends_in_intron	2377518	2377518	-	asmbl_12915	none	STRG.16839.7,Trinity_GG_26463_c1_g1_i1	2	STRG.16839.3,STRG.16839.4,STRG.16839.6	3
scaffold_17	retained_intron	14646820	14646843	-	asmbl_19492,asmbl_19493	none	STRG.20926.1,Trinity_GG_28726_c0_g1_i2	2	blat.proc3829897.chain_1774,blat.proc3829897.chain_1775	2
scaffold_5	alternate_exon	10163270	10163601	+	asmbl_44329	none	STRG.6309.2,blat.proc3829873.chain_2448	2	STRG.6309.1,blat.proc3829873.chain_2450	2
scaffold_1	retained_intron	5645145	5645265	+	asmbl_1733,asmbl_1734	none	STRG.357.1,STRG.357.4,blat.proc3829871.chain_413,blat.proc3829871.chain_415	4	STRG.357.2,STRG.357.3,blat.proc3829871.chain_414	3
scaffold_21	retained_intron	7825384	7825604	-	asmbl_27880	none	blat.proc3829899.chain_1290	1	STRG.24307.1,blat.proc3829899.chain_1289	2
scaffold_12	retained_exon	9827830	9827884	+	asmbl_8847	none	STRG.14936.1,Trinity_GG_8237_c0_g1_i1,blat.proc3829877.chain_3405	3	STRG.14936.2,Trinity_GG_8237_c0_g1_i2,blat.proc3829877.chain_3406	3
scaffold_10	ends_in_intron	11603794	11603794	+	asmbl_4757	none	blat.proc3829877.chain_1386	1	STRG.12807.1,STRG.12807.2,STRG.12807.5,blat.proc3829877.chain_1378,blat.proc3829877.chain_1380,blat.proc3829877.chain_1381,blat.proc3829877.chain_1383,blat.proc3829877.chain_1384,blat.proc3829877.chain_1385	9
scaffold_7	starts_in_intron	10569905	10569905	-	asmbl_49947	none	STRG.9227.1,blat.proc3829891.chain_1480	2	STRG.9227.2,blat.proc3829891.chain_1478	2
scaffold_24	retained_intron	162380	162721	-	asmbl_32693	none	STRG.26299.2,Trinity_GG_31713_c0_g1_i3,blat.proc3829899.chain_3374	3	Trinity_GG_31713_c0_g1_i1,blat.proc3829899.chain_3375	2
scaffold_2	alt_acceptor	13959053	13959054	-	asmbl_23563	none	STRG.2383.2	1	STRG.2383.1,blat.proc3829887.chain_2278	2
scaffold_7	alternate_exon	1441536	1447618	-	asmbl_49542	none	STRG.8632.1,Trinity_GG_21907_c0_g1_i1,blat.proc3829891.chain_1033,blat.proc3829891.chain_903	4	Trinity_GG_21961_c4_g1_i1,blat.proc3829891.chain_1038	2
scaffold_15	alternate_exon	147179	155419	-	asmbl_14921	none	STRG.17865.5	1	blat.proc3829895.chain_2600	1
scaffold_26	retained_intron	9774294	9774402	+	asmbl_35777,asmbl_35779,asmbl_35780	none	STRG.28501.2,STRG.28501.4,STRG.28501.6,Trinity_GG_15770_c0_g1_i1,blat.proc3829885.chain_1533,blat.proc3829885.chain_1534	6	STRG.28501.10	1
scaffold_14	spliced_intron	12351231	12351424	+	asmbl_12406,asmbl_12407	none	STRG.17560.1,STRG.17560.2,blat.proc3829879.chain_2238	3	blat.proc3829879.chain_2236	1
scaffold_17	retained_intron	9867881	9867999	-	asmbl_19259,asmbl_19260,asmbl_19263	none	STRG.20591.1,STRG.20591.2,blat.proc3829897.chain_1549	3	STRG.20591.3,blat.proc3829897.chain_1550	2
scaffold_18	spliced_intron	8911050	8911533	-	asmbl_20076,asmbl_20078,asmbl_20079,asmbl_20080,asmbl_20081,asmbl_20083,asmbl_20084,asmbl_20085	none	STRG.21550.2,STRG.21550.3,STRG.21550.4,STRG.21550.5,STRG.21550.6,blat.proc3829897.chain_2394,blat.proc3829897.chain_2395,blat.proc3829897.chain_2398	8	STRG.21550.1	1
scaffold_25	starts_in_intron	3635157	3635157	+	asmbl_33438	none	blat.proc3829885.chain_344	1	STRG.27294.1,STRG.27294.2,STRG.27294.3,blat.proc3829885.chain_340,blat.proc3829885.chain_341,blat.proc3829885.chain_342	6
scaffold_3	ends_in_intron	14763758	14763758	-	asmbl_39366,asmbl_39367	none	Trinity_GG_19114_c0_g1_i1,Trinity_GG_19114_c0_g1_i2,blat.proc3829887.chain_3599,blat.proc3829887.chain_3600	4	STRG.3818.2,STRG.3818.3	2
scaffold_21	alt_donor	3120567	3120568	+	asmbl_28469	none	STRG.23929.4	1	STRG.23929.1,STRG.23929.3,Trinity_GG_13266_c0_g1_i1,blat.proc3829883.chain_1098,blat.proc3829883.chain_1099,blat.proc3829883.chain_1100	6
scaffold_12	skipped_exon	9668105	9671050	+	asmbl_8833	none	Trinity_GG_8223_c0_g1_i3,blat.proc3829877.chain_3378	2	STRG.14928.1,STRG.14928.2,Trinity_GG_8223_c0_g1_i2,blat.proc3829877.chain_3380	4
scaffold_1	retained_intron	10950971	10951077	+	asmbl_2026,asmbl_2029	none	STRG.713.4,blat.proc3829871.chain_748,blat.proc3829871.chain_754	3	STRG.713.1,STRG.713.2,STRG.713.3,blat.proc3829871.chain_749,blat.proc3829871.chain_750,blat.proc3829871.chain_751,blat.proc3829871.chain_752,blat.proc3829871.chain_753	8
scaffold_16	starts_in_intron	1252335	1252335	-	asmbl_16111,asmbl_16112	none	STRG.19076.2,blat.proc3829897.chain_107	2	STRG.19076.1,blat.proc3829897.chain_105,blat.proc3829897.chain_106	3
scaffold_11	starts_in_intron	4771217	4771217	-	asmbl_6610	none	blat.proc3829893.chain_1976	1	STRG.13560.1,STRG.13560.2,blat.proc3829893.chain_1977	3
scaffold_24	alt_acceptor	4281296	4281297	+	asmbl_32190,asmbl_32191	none	STRG.26568.1,STRG.26568.2,blat.proc3829883.chain_3465,blat.proc3829883.chain_3466	4	STRG.26568.3	1
scaffold_2	retained_exon	7783101	7783179	+	asmbl_24607	none	STRG.2076.6	1	STRG.2076.4,STRG.2076.7,blat.proc3829871.chain_2202,blat.proc3829871.chain_2207,blat.proc3829871.chain_2213	5
scaffold_17	alt_acceptor	10037340	10037341	-	asmbl_19277	none	STRG.20608.1	1	STRG.20608.2,STRG.20608.3	2
scaffold_7	starts_in_intron	13174264	13174264	-	asmbl_50107,asmbl_50108	none	STRG.9415.1,blat.proc3829891.chain_1650,blat.proc3829891.chain_1651	3	STRG.9415.2	1
scaffold_27	skipped_exon	2829483	2830934	+	asmbl_36085	none	STRG.28748.3,blat.proc3829885.chain_1826	2	STRG.28748.1,blat.proc3829885.chain_1828	2
scaffold_9	starts_in_intron	9703336	9703336	+	asmbl_54215	none	Trinity_GG_6324_c0_g1_i1,blat.proc3829877.chain_107	2	STRG.11336.4	1
scaffold_9	alt_donor	571217	571218	+	asmbl_53752	none	STRG.10779.2	1	STRG.10779.1,STRG.10779.3	2
scaffold_21	starts_in_intron	2481501	2481501	-	asmbl_27495	none	Trinity_GG_30317_c0_g1_i1,blat.proc3829899.chain_949	2	STRG.23859.1,Trinity_GG_30317_c0_g1_i2,blat.proc3829899.chain_950	3
scaffold_4	spliced_intron	4104440	4104704	+	asmbl_42558,asmbl_42559	none	STRG.4315.1,blat.proc3829873.chain_662	2	blat.proc3829873.chain_653,blat.proc3829873.chain_654	2
scaffold_3	retained_intron	8161846	8161989	-	asmbl_38962	none	Trinity_GG_18833_c2_g2_i2,blat.proc3829887.chain_3139	2	blat.proc3829887.chain_3140	1
scaffold_12	alt_donor	4984361	4984362	+	asmbl_8585,asmbl_8586,asmbl_8590,asmbl_8591	none	STRG.14656.1,STRG.14656.2,blat.proc3829877.chain_3080,blat.proc3829877.chain_3082,blat.proc3829877.chain_3086	5	blat.proc3829877.chain_3085	1
scaffold_9	retained_intron	16738714	16738866	-	asmbl_55586	none	Trinity_GG_23557_c0_g1_i4,blat.proc3829893.chain_222	2	STRG.11811.1,STRG.11811.2,STRG.11811.3,Trinity_GG_23557_c0_g1_i2,Trinity_GG_23557_c0_g1_i6,blat.proc3829893.chain_219,blat.proc3829893.chain_220	7
scaffold_28	alt_donor	7304695	7304696	-	asmbl_37720,asmbl_37721,asmbl_37723	none	STRG.29781.1,STRG.29781.3,STRG.29781.4	3	STRG.29781.2	1
scaffold_26	retained_exon	9841947	9842107	-	asmbl_35066	none	STRG.28525.1,Trinity_GG_32930_c0_g1_i1,blat.proc3829901.chain_1622	3	STRG.28525.2	1
scaffold_10	retained_intron	3928652	3928785	-	asmbl_3156	none	STRG.12230.2	1	STRG.12230.4,blat.proc3829893.chain_695	2
scaffold_27	ends_in_intron	1090805	1090805	+	asmbl_35949	none	blat.proc3829885.chain_1643	1	STRG.28588.1,STRG.28588.2,STRG.28588.3,blat.proc3829885.chain_1642,blat.proc3829885.chain_1644	5
scaffold_14	spliced_intron	10410634	10411783	-	asmbl_13403	none	blat.proc3829895.chain_2087	1	STRG.17378.1,Trinity_GG_26748_c0_g1_i1,Trinity_GG_26748_c0_g1_i2,Trinity_GG_26748_c0_g1_i3,blat.proc3829895.chain_2086,blat.proc3829895.chain_2088	6
scaffold_10	alt_acceptor	1710326	1710327	-	asmbl_2991	none	STRG.12021.2	1	STRG.12021.1,Trinity_GG_23646_c0_g1_i1	2
scaffold_1	starts_in_intron	5738303	5738303	+	asmbl_1769,asmbl_1771	none	blat.proc3829871.chain_370,blat.proc3829871.chain_375	2	STRG.382.2,blat.proc3829871.chain_372,blat.proc3829871.chain_373	3
scaffold_4	retained_intron	18288544	18288639	+	asmbl_43432	none	STRG.5428.1	1	STRG.5428.2	1
scaffold_13	spliced_intron	6985069	6985291	+	asmbl_10988	none	STRG.15999.3	1	STRG.15999.4	1
scaffold_20	alt_acceptor	6746886	6746887	+	asmbl_25828	none	STRG.23237.2	1	STRG.23237.1,blat.proc3829883.chain_335	2
scaffold_7	starts_in_intron	3374982	3374982	+	asmbl_50563	none	Trinity_GG_4806_c0_g1_i1,blat.proc3829875.chain_1160	2	STRG.8729.1,Trinity_GG_4806_c0_g1_i2,blat.proc3829875.chain_1159	3
scaffold_11	alt_acceptor	8426466	8426467	+	asmbl_5732,asmbl_5740	none	STRG.13849.1,STRG.13849.2	2	Trinity_GG_7631_c0_g1_i2,Trinity_GG_7631_c0_g1_i3,blat.proc3829877.chain_2325,blat.proc3829877.chain_2327	4
scaffold_3	retained_intron	19885475	19886383	-	asmbl_39614	none	STRG.4100.2,Trinity_GG_19264_c1_g1_i2,Trinity_GG_19264_c1_g1_i4,Trinity_GG_19264_c2_g1_i1,blat.proc3829889.chain_142,blat.proc3829889.chain_143,blat.proc3829889.chain_145	7	STRG.4100.1,STRG.4100.4,Trinity_GG_19264_c1_g1_i1,blat.proc3829889.chain_141	4
scaffold_21	alternate_exon	3157162	3157666	+	asmbl_28487	none	STRG.23945.5,blat.proc3829883.chain_1064	2	STRG.23945.1,STRG.23945.2,STRG.23945.3,STRG.23945.4,blat.proc3829883.chain_1049,blat.proc3829883.chain_1050,blat.proc3829883.chain_1051,blat.proc3829883.chain_1052,blat.proc3829883.chain_1053,blat.proc3829883.chain_1054,blat.proc3829883.chain_1055,blat.proc3829883.chain_1056	12
scaffold_8	retained_intron	11850873	11851005	+	asmbl_52271,asmbl_52272	none	blat.proc3829875.chain_2971,blat.proc3829875.chain_2980	2	STRG.10382.2,STRG.10382.3,blat.proc3829875.chain_2966,blat.proc3829875.chain_2967,blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2975,blat.proc3829875.chain_2976,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978,blat.proc3829875.chain_2979	14
scaffold_5	alt_acceptor	18787819	18787820	+	asmbl_44937	none	STRG.6998.1,Trinity_GG_3846_c0_g1_i3,blat.proc3829873.chain_3142	3	STRG.6998.2,Trinity_GG_3846_c0_g1_i2,blat.proc3829873.chain_3144	3
scaffold_4	alt_acceptor	12716790	12716791	-	asmbl_41698	none	STRG.4911.1,blat.proc3829889.chain_977	2	STRG.4911.2,blat.proc3829889.chain_979	2
scaffold_11	starts_in_intron	13304487	13304487	+	asmbl_6025	none	Trinity_GG_7826_c2_g1_i1,blat.proc3829877.chain_2685	2	STRG.14188.1,blat.proc3829877.chain_2682	2
scaffold_10	retained_intron	378915	379004	-	asmbl_2863,asmbl_2864,asmbl_2866,asmbl_2868	none	STRG.11913.3,STRG.11913.4,STRG.11913.5,Trinity_GG_23607_c0_g1_i1,Trinity_GG_23607_c0_g1_i5,blat.proc3829893.chain_304,blat.proc3829893.chain_306	7	STRG.11913.1,STRG.11913.2,blat.proc3829893.chain_302	3
scaffold_13	retained_intron	7085089	7085351	-	asmbl_9808	none	blat.proc3829895.chain_773	1	STRG.16000.1,blat.proc3829895.chain_774	2
scaffold_1	alt_donor	12547508	12547509	-	asmbl_736,asmbl_739	none	STRG.867.1,blat.proc3829887.chain_661,blat.proc3829887.chain_663	3	STRG.867.2	1
scaffold_3	retained_intron	10274721	10275024	+	asmbl_40210	none	blat.proc3829871.chain_3624	1	STRG.3461.1,STRG.3461.3,STRG.3461.4,blat.proc3829871.chain_3621,blat.proc3829871.chain_3622	5
scaffold_21	alt_donor	3124889	3124890	-	asmbl_27544	none	blat.proc3829899.chain_980	1	STRG.23930.1	1
scaffold_13	retained_intron	5822786	5823442	+	asmbl_10881	none	STRG.15880.3	1	STRG.15880.1,STRG.15880.4,Trinity_GG_8766_c0_g1_i8,blat.proc3829879.chain_641	4
scaffold_14	spliced_intron	15247760	15247780	+	asmbl_12568	none	blat.proc3829879.chain_2431	1	blat.proc3829879.chain_2429	1
scaffold_11	starts_in_intron	10976661	10976661	-	asmbl_6985	none	blat.proc3829893.chain_2454	1	STRG.14050.1,STRG.14050.2,blat.proc3829893.chain_2452,blat.proc3829893.chain_2453	4
scaffold_17	starts_in_intron	11339255	11339255	-	asmbl_19324	none	blat.proc3829897.chain_1582	1	STRG.20676.1,STRG.20676.2,blat.proc3829897.chain_1581,blat.proc3829897.chain_1583	4
scaffold_21	ends_in_intron	5519873	5519873	-	asmbl_27690	none	blat.proc3829899.chain_1159	1	blat.proc3829899.chain_1154	1
scaffold_6	starts_in_intron	7848570	7848570	+	asmbl_47020	none	Trinity_GG_4182_c0_g1_i2,blat.proc3829875.chain_5	2	STRG.7662.1,STRG.7662.2,STRG.7662.5	3
scaffold_4	starts_in_intron	7094699	7094699	+	asmbl_42794	none	Trinity_GG_2536_c0_g1_i5,blat.proc3829873.chain_946	2	STRG.4545.1,STRG.4545.2,STRG.4545.3,STRG.4545.4,blat.proc3829873.chain_943	5
scaffold_2	retained_exon	10638080	10638130	-	asmbl_23440,asmbl_23442,asmbl_23444	none	STRG.2225.1,blat.proc3829887.chain_2055,blat.proc3829887.chain_2056,blat.proc3829887.chain_2058	4	STRG.2225.2,blat.proc3829887.chain_2057	2
scaffold_28	alt_donor	4239994	4239995	+	asmbl_38223	none	STRG.29590.2	1	STRG.29590.1	1
scaffold_5	alt_acceptor	9328137	9328138	-	asmbl_45652	none	STRG.6250.2	1	blat.proc3829889.chain_2320	1
scaffold_4	alt_donor	5649000	5649001	-	asmbl_41352,asmbl_41354	none	STRG.4469.2,STRG.4469.3,blat.proc3829889.chain_614	3	STRG.4469.4,blat.proc3829889.chain_619	2
scaffold_10	starts_in_intron	13626782	13626782	-	asmbl_3820	none	blat.proc3829893.chain_1488	1	STRG.12953.1,blat.proc3829893.chain_1487	2
scaffold_23	spliced_intron	7982619	7982719	+	asmbl_31041	none	STRG.26088.1	1	blat.proc3829883.chain_2988	1
scaffold_3	ends_in_intron	12455272	12455272	-	asmbl_39164	none	blat.proc3829887.chain_3409	1	STRG.3640.1,blat.proc3829887.chain_3408	2
scaffold_22	alternate_exon	4345833	4345964	+	asmbl_29276	none	STRG.24835.3,blat.proc3829883.chain_1863	2	STRG.24835.1,blat.proc3829883.chain_1864	2
scaffold_6	spliced_intron	12554228	12554438	-	asmbl_48759,asmbl_48760,asmbl_48761,asmbl_48762,asmbl_48763	none	STRG.8010.1,STRG.8010.2,STRG.8010.3,blat.proc3829891.chain_318,blat.proc3829891.chain_322	5	blat.proc3829891.chain_321	1
scaffold_25	spliced_intron	7878592	7878745	+	asmbl_33681	none	STRG.27596.2	1	STRG.27596.1	1
scaffold_17	alt_acceptor	7023453	7023454	+	asmbl_18015	none	STRG.20355.3	1	STRG.20355.2	1
scaffold_24	spliced_intron	2514768	2515025	+	asmbl_32113	none	STRG.26452.4,blat.proc3829883.chain_3354	2	STRG.26452.3,blat.proc3829883.chain_3353	2
scaffold_24	alt_acceptor	10335153	10335154	+	asmbl_32557	none	blat.proc3829885.chain_10	1	STRG.26974.1,STRG.26974.2,blat.proc3829885.chain_11	3
scaffold_7	spliced_intron	12649977	12650680	-	asmbl_50077	none	STRG.9370.3	1	STRG.9370.2,blat.proc3829891.chain_1620	2
scaffold_9	alt_acceptor	11842900	11842901	-	asmbl_55299	none	STRG.11491.1	1	blat.proc3829891.chain_3624,blat.proc3829891.chain_3625	2
scaffold_13	retained_exon	15672427	15672466	+	asmbl_11507	none	STRG.16598.2	1	STRG.16598.3	1
scaffold_3	spliced_intron	13801022	13801246	-	asmbl_39252	none	STRG.3721.2,blat.proc3829887.chain_3468	2	STRG.3721.1,Trinity_GG_19038_c0_g1_i1,Trinity_GG_19038_c0_g1_i4,blat.proc3829887.chain_3467,blat.proc3829887.chain_3469	5
scaffold_16	ends_in_intron	4658014	4658014	+	asmbl_16989	none	blat.proc3829881.chain_69	1	STRG.19239.1,STRG.19239.2,blat.proc3829881.chain_70,blat.proc3829881.chain_71,blat.proc3829881.chain_72	5
scaffold_22	starts_in_intron	7019759	7019759	-	asmbl_30139	none	blat.proc3829899.chain_2140	1	STRG.25024.1,blat.proc3829899.chain_2139	2
scaffold_24	starts_in_intron	6724785	6724785	-	asmbl_32958	none	blat.proc3829901.chain_24	1	STRG.26704.1,STRG.26704.2,blat.proc3829901.chain_21,blat.proc3829901.chain_22,blat.proc3829901.chain_25	5
scaffold_14	skipped_exon	11676499	11677256	-	asmbl_13505	none	STRG.17497.1,blat.proc3829895.chain_2192	2	STRG.17497.2,blat.proc3829895.chain_2194	2
scaffold_8	alternate_exon	16143501	16144228	-	asmbl_53369,asmbl_53371	none	STRG.10597.1,blat.proc3829891.chain_2741,blat.proc3829891.chain_2743	3	blat.proc3829891.chain_2745	1
scaffold_4	retained_exon	6704806	6705397	+	asmbl_42752,asmbl_42754	none	STRG.4530.1,STRG.4530.2,blat.proc3829873.chain_876	3	STRG.4530.3	1
scaffold_10	skipped_exon	10641555	10642467	-	asmbl_3658	none	STRG.12752.2	1	STRG.12752.1	1
scaffold_6	alt_acceptor	17522226	17522227	+	asmbl_47699	none	STRG.8451.2,Trinity_GG_4648_c1_g1_i1,Trinity_GG_4648_c1_g1_i4,blat.proc3829875.chain_841,blat.proc3829875.chain_842	5	STRG.8451.3	1
scaffold_7	alt_acceptor	1229828	1229829	+	asmbl_50471,asmbl_50483	none	STRG.8627.4,Trinity_GG_4740_c0_g1_i17,blat.proc3829875.chain_1047	3	STRG.8627.2,STRG.8627.3,STRG.8627.5,STRG.8627.6,Trinity_GG_4740_c0_g1_i15,Trinity_GG_4740_c0_g1_i16,Trinity_GG_4740_c0_g1_i21,blat.proc3829875.chain_1042,blat.proc3829875.chain_1046,blat.proc3829875.chain_1052	10
scaffold_23	starts_in_intron	2414859	2414859	+	asmbl_30707,asmbl_30708	none	STRG.25693.4,blat.proc3829883.chain_2609	2	STRG.25693.1,STRG.25693.2,STRG.25693.3,Trinity_GG_14189_c0_g1_i1,blat.proc3829883.chain_2608	5
scaffold_12	alternate_exon	1989767	1990082	-	asmbl_7451,asmbl_7454	none	STRG.14473.1,blat.proc3829893.chain_2864,blat.proc3829893.chain_2865	3	blat.proc3829893.chain_2863	1
scaffold_17	ends_in_intron	14275646	14275646	-	asmbl_19466	none	STRG.20889.2,Trinity_GG_28736_c1_g1_i1,blat.proc3829897.chain_1792	3	STRG.20889.1	1
scaffold_1	alternate_exon	11708942	11709103	+	asmbl_2118	none	STRG.784.1,Trinity_GG_470_c0_g1_i2,blat.proc3829871.chain_828	3	blat.proc3829871.chain_830	1
scaffold_2	alt_acceptor	884774	884775	+	asmbl_24144	none	STRG.1563.3	1	blat.proc3829871.chain_1566,blat.proc3829871.chain_1567	2
scaffold_20	retained_intron	1126444	1126470	-	asmbl_26476	none	STRG.22810.1	1	blat.proc3829897.chain_3595	1
scaffold_16	starts_in_intron	751711	751711	-	asmbl_16070,asmbl_16071	none	blat.proc3829897.chain_13,blat.proc3829897.chain_14	2	STRG.19044.1,STRG.19044.2,blat.proc3829897.chain_10,blat.proc3829897.chain_11,blat.proc3829897.chain_9	5
scaffold_15	retained_intron	11402043	11402524	-	asmbl_15511,asmbl_15515	none	STRG.18596.2,blat.proc3829895.chain_3373	2	STRG.18596.3,blat.proc3829895.chain_3375	2
scaffold_87	alt_donor	8954	8955	+	asmbl_53702,asmbl_53703,asmbl_53704	none	STRG.30139.3,STRG.30139.5,STRG.30139.6,Trinity_GG_18556_c0_g1_i1	4	blat.proc3829901.chain_3215	1
scaffold_2	alternate_exon	11783844	11785660	+	asmbl_24805	none	STRG.2276.1,blat.proc3829871.chain_2368	2	Trinity_GG_1272_c0_g1_i2,blat.proc3829871.chain_2367	2
scaffold_8	retained_intron	6714778	6715271	+	asmbl_51952	none	STRG.10033.1,Trinity_GG_5558_c0_g1_i2,blat.proc3829875.chain_2485	3	STRG.10033.2,Trinity_GG_5558_c0_g1_i1,blat.proc3829875.chain_2486	3
scaffold_10	skipped_exon	13285861	13288149	-	asmbl_3771,asmbl_3772,asmbl_3774	none	STRG.12910.2,STRG.12910.4,blat.proc3829893.chain_1433,blat.proc3829893.chain_1434,blat.proc3829893.chain_1435	5	blat.proc3829893.chain_1436	1
scaffold_6	alt_acceptor	11464785	11464786	-	asmbl_48692	none	blat.proc3829891.chain_179	1	STRG.7935.1,blat.proc3829891.chain_180,blat.proc3829891.chain_181	3
scaffold_6	alt_acceptor	13575827	13575828	-	asmbl_48852	none	STRG.8093.3	1	STRG.8093.4	1
scaffold_23	alternate_exon	811093	811159	-	asmbl_31329	none	STRG.25556.1	1	STRG.25556.2	1
scaffold_24	alt_acceptor	3393892	3393893	+	asmbl_32159	none	STRG.26517.2	1	STRG.26517.1,blat.proc3829883.chain_3380	2
scaffold_2258	retained_exon	293	402	-	asmbl_30576	none	STRG.30708.2	1	STRG.30708.1	1
scaffold_25	alternate_exon	431030	433816	+	asmbl_33322	none	STRG.27069.1,blat.proc3829885.chain_180	2	Trinity_GG_14952_c0_g1_i1,blat.proc3829885.chain_181	2
scaffold_8	alt_acceptor	14395594	14395595	-	asmbl_53310	none	STRG.10517.1,blat.proc3829891.chain_2657	2	STRG.10517.2,blat.proc3829891.chain_2658	2
scaffold_6	starts_in_intron	8638632	8638632	-	asmbl_48509	none	STRG.7735.2,blat.proc3829891.chain_1	2	STRG.7735.1,blat.proc3829889.chain_3750	2
scaffold_17	spliced_intron	8355294	8355515	+	asmbl_18116	none	STRG.20446.2,blat.proc3829881.chain_1236	2	STRG.20446.3,Trinity_GG_11203_c0_g1_i3,blat.proc3829881.chain_1235	3
scaffold_4	alternate_exon	8990668	8990778	-	asmbl_41537	none	STRG.4717.5	1	STRG.4717.1,STRG.4717.3,blat.proc3829889.chain_759	3
scaffold_5	retained_exon	5738079	5738649	+	asmbl_44027	none	STRG.5984.4	1	STRG.5984.3,blat.proc3829873.chain_2049	2
scaffold_18	spliced_intron	1896938	1897477	-	asmbl_19688,asmbl_19690,asmbl_19691,asmbl_19692,asmbl_19694,asmbl_19696,asmbl_19703,asmbl_19704,asmbl_19705,asmbl_19706	none	STRG.21072.10,STRG.21072.7,STRG.21072.9,blat.proc3829897.chain_1890,blat.proc3829897.chain_1897,blat.proc3829897.chain_1898,blat.proc3829897.chain_1899,blat.proc3829897.chain_1901,blat.proc3829897.chain_1902	9	STRG.21072.2,STRG.21072.3,STRG.21072.8	3
scaffold_14	spliced_intron	12593720	12594207	+	asmbl_12416	none	STRG.17564.3	1	STRG.17564.2,Trinity_GG_9621_c0_g1_i1,blat.proc3829879.chain_2188	3
scaffold_4	alt_donor	12544247	12544248	-	asmbl_41667	none	STRG.4890.1,blat.proc3829889.chain_954,blat.proc3829889.chain_955	3	blat.proc3829889.chain_956	1
scaffold_10	alt_acceptor	14688189	14688190	+	asmbl_4924	none	STRG.13008.2	1	STRG.13008.1,STRG.13008.3,blat.proc3829877.chain_1535,blat.proc3829877.chain_1537	4
scaffold_9	spliced_intron	14039157	14039465	+	asmbl_54498	none	STRG.11659.1,Trinity_GG_6520_c0_g1_i3,blat.proc3829877.chain_438	3	Trinity_GG_6520_c0_g1_i2,blat.proc3829877.chain_435	2
scaffold_16	alternate_exon	11952502	11952529	+	asmbl_17422	none	STRG.19712.3,Trinity_GG_10805_c0_g1_i4,blat.proc3829881.chain_577	3	STRG.19712.1,Trinity_GG_10805_c0_g1_i3,blat.proc3829881.chain_578	3
scaffold_13	retained_intron	3430642	3430833	+	asmbl_10673,asmbl_10674	none	STRG.15637.1,Trinity_GG_8566_c0_g1_i5,blat.proc3829879.chain_288,blat.proc3829879.chain_289	4	blat.proc3829879.chain_287	1
scaffold_11	retained_exon	4675629	4675850	-	asmbl_6586,asmbl_6591	none	STRG.13547.1,blat.proc3829893.chain_1971,blat.proc3829893.chain_1973	3	STRG.13547.2,STRG.13547.3,STRG.13547.5,blat.proc3829893.chain_1970	4
scaffold_1	retained_exon	6496783	6496819	-	asmbl_374	none	blat.proc3829887.chain_247	1	STRG.443.2	1
scaffold_27	retained_intron	3104389	3104460	+	asmbl_36146	none	blat.proc3829885.chain_1792	1	STRG.28777.1,blat.proc3829885.chain_1790	2
scaffold_1	alternate_exon	9961517	9961757	-	asmbl_578	none	STRG.662.2,blat.proc3829887.chain_591	2	STRG.662.1,blat.proc3829887.chain_589,blat.proc3829887.chain_590	3
scaffold_20	alt_acceptor	1624127	1624128	-	asmbl_26525	none	STRG.22888.1	1	STRG.22888.2,STRG.22888.3	2
scaffold_1	ends_in_intron	15811858	15811858	+	asmbl_2428	none	Trinity_GG_646_c0_g1_i2,blat.proc3829871.chain_1175	2	STRG.1106.1,Trinity_GG_646_c0_g1_i1,blat.proc3829871.chain_1174	3
scaffold_18	alt_acceptor	8726192	8726193	+	asmbl_20883,asmbl_20887	none	STRG.21533.1,blat.proc3829881.chain_2482,blat.proc3829881.chain_2483	3	STRG.21533.2,STRG.21533.4,blat.proc3829881.chain_2484,blat.proc3829881.chain_2485	4
scaffold_8	spliced_intron	18573669	18573909	-	asmbl_53569,asmbl_53570	none	STRG.10747.2,STRG.10747.3,Trinity_GG_22963_c0_g1_i4,blat.proc3829891.chain_2881	4	STRG.10747.1,Trinity_GG_22963_c0_g1_i1,blat.proc3829891.chain_2880	3
scaffold_27	starts_in_intron	9332000	9332000	-	asmbl_37086	none	blat.proc3829901.chain_2279	1	STRG.29165.1,STRG.29165.2,blat.proc3829901.chain_2280	3
scaffold_6	ends_in_intron	12626579	12626579	-	asmbl_48771	none	STRG.8013.2	1	STRG.8013.1,Trinity_GG_21546_c0_g1_i1,Trinity_GG_21546_c0_g1_i2,blat.proc3829891.chain_254,blat.proc3829891.chain_256	5
scaffold_11	retained_intron	170652	170917	+	asmbl_5219	none	STRG.13231.3	1	STRG.13231.5	1
scaffold_2	skipped_exon	12349678	12352616	+	asmbl_24821	none	STRG.2292.2,blat.proc3829871.chain_2393	2	STRG.2292.1	1
scaffold_13	ends_in_intron	3247075	3247075	+	asmbl_10657	none	blat.proc3829879.chain_348	1	STRG.15616.1,blat.proc3829879.chain_349	2
scaffold_25	alternate_exon	9698384	9698452	+	asmbl_33825	none	STRG.27765.2,blat.proc3829885.chain_789	2	STRG.27765.1,Trinity_GG_15321_c0_g1_i1,blat.proc3829885.chain_790	3
scaffold_7	alt_acceptor	12368361	12368362	+	asmbl_51126,asmbl_51129,asmbl_51131	none	STRG.9325.1,blat.proc3829875.chain_1799,blat.proc3829875.chain_1800,blat.proc3829875.chain_1803	4	blat.proc3829875.chain_1801	1
scaffold_8	alt_acceptor	9926789	9926790	-	asmbl_53071,asmbl_53072	none	STRG.10237.1,blat.proc3829891.chain_2339,blat.proc3829891.chain_2340	3	STRG.10237.2	1
scaffold_11	retained_intron	6395847	6395959	-	asmbl_6682,asmbl_6686	none	STRG.13685.1,STRG.13685.3,Trinity_GG_24659_c0_g1_i2,blat.proc3829893.chain_2111	4	STRG.13685.2,STRG.13685.4,Trinity_GG_24659_c0_g1_i3,blat.proc3829893.chain_2113	4
scaffold_1	retained_intron	7097403	7097526	+	asmbl_1877	none	blat.proc3829871.chain_527	1	STRG.502.1,blat.proc3829871.chain_528	2
scaffold_17	spliced_intron	9447461	9447558	+	asmbl_18209,asmbl_18210	none	STRG.20557.1,Trinity_GG_11275_c0_g1_i4,Trinity_GG_11275_c0_g1_i8,blat.proc3829881.chain_1392,blat.proc3829881.chain_1394	5	Trinity_GG_11275_c0_g1_i11,blat.proc3829881.chain_1391	2
scaffold_17	spliced_intron	7047119	7047494	+	asmbl_18018	none	blat.proc3829881.chain_1119	1	Trinity_GG_11134_c0_g1_i1	1
scaffold_340	retained_intron	3284	3508	+	asmbl_40965,asmbl_40966	none	STRG.30267.3,STRG.30267.4,Trinity_GG_24051_c1_g1_i1,blat.proc3829893.chain_1095	4	blat.proc3829885.chain_3313	1
scaffold_9	spliced_intron	9664373	9664460	-	asmbl_55197	none	STRG.11333.1	1	blat.proc3829891.chain_3506	1
scaffold_22	skipped_exon	685999	686536	+	asmbl_29172	none	STRG.24704.2,Trinity_GG_13656_c0_g1_i2,blat.proc3829883.chain_1755	3	STRG.24704.1,Trinity_GG_13656_c0_g1_i1,blat.proc3829883.chain_1754	3
scaffold_3	alt_acceptor	15785749	15785750	-	asmbl_39397	none	STRG.3856.1,blat.proc3829887.chain_3691	2	STRG.3856.2	1
scaffold_2	alt_acceptor	19774094	19774095	+	asmbl_25320	none	blat.proc3829871.chain_2984	1	STRG.2825.1,STRG.2825.2,blat.proc3829871.chain_2982,blat.proc3829871.chain_2983,blat.proc3829871.chain_2985	5
scaffold_7	alt_acceptor	11659530	11659531	+	asmbl_51061	none	STRG.9273.1,blat.proc3829875.chain_1680	2	STRG.9273.2	1
scaffold_14	alt_donor	11639474	11639475	+	asmbl_12378	none	STRG.17482.2	1	STRG.17482.1	1
scaffold_17	starts_in_intron	12395183	12395183	-	asmbl_19379	none	blat.proc3829897.chain_1625	1	STRG.20756.1	1
scaffold_8	retained_intron	11272951	11273303	+	asmbl_52202	none	STRG.10338.2	1	Trinity_GG_5734_c0_g1_i1,blat.proc3829875.chain_2818	2
scaffold_11	skipped_exon	3024724	3026445	+	asmbl_5355	none	STRG.13420.3	1	STRG.13420.2,blat.proc3829877.chain_1818	2
scaffold_7	alternate_exon	17318817	17318924	+	asmbl_51361,asmbl_51363	none	STRG.9596.2,STRG.9596.3,blat.proc3829875.chain_1972	3	STRG.9596.1	1
scaffold_3	retained_intron	10304998	10305493	+	asmbl_40216	none	STRG.3466.2,Trinity_GG_1968_c0_g2_i3,Trinity_GG_1968_c3_g1_i1,blat.proc3829871.chain_3657,blat.proc3829871.chain_3660	5	STRG.3466.3	1
scaffold_15	spliced_intron	6780650	6780734	-	asmbl_15266	none	STRG.18282.1,blat.proc3829895.chain_3036	2	STRG.18282.2	1
scaffold_6	retained_intron	14379745	14379856	+	asmbl_47538	none	STRG.8188.1,Trinity_GG_4500_c0_g1_i2,blat.proc3829875.chain_602	3	STRG.8188.2,blat.proc3829875.chain_603	2
scaffold_22	retained_intron	7341577	7341665	+	asmbl_29465	none	blat.proc3829883.chain_2064	1	STRG.25048.1,blat.proc3829883.chain_2065	2
scaffold_5	retained_intron	16583212	16583590	-	asmbl_46135,asmbl_46136,asmbl_46137	none	STRG.6840.2,blat.proc3829889.chain_2887,blat.proc3829889.chain_2890	3	STRG.6840.1	1
scaffold_1	spliced_intron	16923881	16923994	-	asmbl_1021	none	STRG.1193.2	1	STRG.1193.3	1
scaffold_13	alt_acceptor	16138096	16138097	+	asmbl_11531	none	STRG.16640.1	1	STRG.16640.2	1
scaffold_15	retained_intron	9819517	9819607	+	asmbl_14362,asmbl_14363	none	STRG.18487.2,blat.proc3829879.chain_3047	2	STRG.18487.1,blat.proc3829879.chain_3042,blat.proc3829879.chain_3044,blat.proc3829879.chain_3045,blat.proc3829879.chain_3046	5
scaffold_6	spliced_intron	10897965	10898174	+	asmbl_47240,asmbl_47241	none	STRG.7901.1,STRG.7901.2,blat.proc3829875.chain_290,blat.proc3829875.chain_292	4	Trinity_GG_4335_c0_g1_i4,blat.proc3829875.chain_291	2
scaffold_23	skipped_exon	2585757	2588165	-	asmbl_31461	none	STRG.25705.2,blat.proc3829899.chain_2749	2	STRG.25705.5,blat.proc3829899.chain_2752	2
scaffold_12	alt_donor	10188435	10188436	-	asmbl_7860	none	STRG.14979.2,blat.proc3829893.chain_3405	2	STRG.14979.1,STRG.14979.4,STRG.14979.5,STRG.14979.6,blat.proc3829893.chain_3400,blat.proc3829893.chain_3401,blat.proc3829893.chain_3403	7
scaffold_9	retained_exon	17851393	17851853	+	asmbl_54631,asmbl_54633	none	STRG.11860.1,Trinity_GG_6607_c0_g1_i6,blat.proc3829877.chain_589	3	STRG.11860.2	1
scaffold_5	spliced_intron	233770	233796	+	asmbl_43753	none	STRG.5584.2	1	STRG.5584.1	1
scaffold_13	spliced_intron	16436550	16436943	+	asmbl_11553,asmbl_11554	none	STRG.16684.1,Trinity_GG_9187_c0_g1_i4,Trinity_GG_9187_c0_g1_i6,blat.proc3829879.chain_1411,blat.proc3829879.chain_1412	5	STRG.16684.2,blat.proc3829879.chain_1410	2
scaffold_4	alt_donor	4433714	4433715	+	asmbl_42601	none	STRG.4341.3	1	STRG.4341.2,blat.proc3829873.chain_730	2
scaffold_20	alt_acceptor	2389441	2389442	-	asmbl_26568	none	STRG.22957.3	1	STRG.22957.2,blat.proc3829897.chain_3728	2
scaffold_24	spliced_intron	7167433	7167861	+	asmbl_32381	none	STRG.26748.2	1	STRG.26748.1,Trinity_GG_14802_c0_g1_i1,Trinity_GG_14802_c0_g1_i3,blat.proc3829883.chain_3669,blat.proc3829883.chain_3670,blat.proc3829883.chain_3671,blat.proc3829883.chain_3672	7
scaffold_14	skipped_exon	6901549	6902436	+	asmbl_12090	none	STRG.17115.2,blat.proc3829879.chain_1882	2	STRG.17115.1,blat.proc3829879.chain_1881	2
scaffold_11	spliced_intron	8105125	8105409	+	asmbl_5693,asmbl_5694,asmbl_5697,asmbl_5698,asmbl_5699,asmbl_5700	none	STRG.13811.1,STRG.13811.2,STRG.13811.3,STRG.13811.4,blat.proc3829877.chain_2298,blat.proc3829877.chain_2299,blat.proc3829877.chain_2301,blat.proc3829877.chain_2303	8	blat.proc3829877.chain_2300	1
scaffold_7	spliced_intron	8295633	8296154	-	asmbl_49807,asmbl_49808,asmbl_49809	none	STRG.9056.1,STRG.9056.2,STRG.9056.4,blat.proc3829891.chain_1235,blat.proc3829891.chain_1237,blat.proc3829891.chain_1238	6	STRG.9056.3,Trinity_GG_22080_c0_g1_i2,blat.proc3829891.chain_1234,blat.proc3829891.chain_1236	4
scaffold_3	skipped_exon	18154089	18156850	-	asmbl_39544,asmbl_39545	none	STRG.4023.3,STRG.4023.4	2	STRG.4023.1,STRG.4023.2,blat.proc3829889.chain_96,blat.proc3829889.chain_97	4
scaffold_21	alternate_exon	3155826	3156165	+	asmbl_28481,asmbl_28482,asmbl_28491,asmbl_28492,asmbl_28493	none	STRG.23945.2,STRG.23945.3,blat.proc3829883.chain_1049,blat.proc3829883.chain_1050,blat.proc3829883.chain_1051,blat.proc3829883.chain_1054,blat.proc3829883.chain_1055	7	STRG.23945.5,blat.proc3829883.chain_1064	2
scaffold_11	spliced_intron	7819465	7819560	+	asmbl_5648	none	STRG.13772.2,Trinity_GG_7583_c0_g1_i1,blat.proc3829877.chain_2248	3	STRG.13772.1,Trinity_GG_7583_c0_g1_i2,blat.proc3829877.chain_2249	3
scaffold_9	alternate_exon	11829494	11831597	-	asmbl_55286	none	STRG.11487.2	1	blat.proc3829891.chain_3582	1
scaffold_7	starts_in_intron	4178820	4178820	+	asmbl_50605	none	blat.proc3829875.chain_1173	1	STRG.8807.1,STRG.8807.2,STRG.8807.3,blat.proc3829875.chain_1170,blat.proc3829875.chain_1171	5
scaffold_12	skipped_exon	1055100	1056753	+	asmbl_8418,asmbl_8421	none	STRG.14436.1,STRG.14436.4,blat.proc3829877.chain_2886	3	STRG.14436.2,STRG.14436.3	2
scaffold_20	ends_in_intron	7185120	7185120	-	asmbl_26804	none	Trinity_GG_29998_c0_g1_i3,blat.proc3829899.chain_305	2	STRG.23274.1,blat.proc3829899.chain_302,blat.proc3829899.chain_303,blat.proc3829899.chain_304,blat.proc3829899.chain_306	5
scaffold_17	alternate_exon	9004562	9005702	+	asmbl_18184	none	blat.proc3829881.chain_1322	1	STRG.20513.1,STRG.20513.3,blat.proc3829881.chain_1319,blat.proc3829881.chain_1321	4
scaffold_13	spliced_intron	3352902	3353012	-	asmbl_9497	none	STRG.15631.2	1	blat.proc3829895.chain_389	1
scaffold_4	spliced_intron	5228399	5228662	-	asmbl_41311	none	STRG.4417.4,blat.proc3829889.chain_438	2	STRG.4417.2,Trinity_GG_19430_c0_g1_i1,blat.proc3829889.chain_440	3
scaffold_17	alternate_exon	9005703	9007838	+	asmbl_18181	none	STRG.20513.1,blat.proc3829881.chain_1321	2	blat.proc3829881.chain_1322	1
scaffold_21	alternate_exon	835280	835312	+	asmbl_28336	none	STRG.23762.3	1	STRG.23762.1,blat.proc3829883.chain_910,blat.proc3829883.chain_911,blat.proc3829883.chain_912,blat.proc3829883.chain_913	5
scaffold_6	alternate_exon	14137677	14137743	+	asmbl_47522	none	STRG.8170.2	1	STRG.8170.1,blat.proc3829875.chain_552,blat.proc3829875.chain_553	3
scaffold_16	starts_in_intron	8041886	8041886	+	asmbl_17170	none	Trinity_GG_10630_c0_g1_i2,blat.proc3829881.chain_279	2	STRG.19437.1,STRG.19437.2,Trinity_GG_10630_c0_g1_i4,blat.proc3829881.chain_282,blat.proc3829881.chain_283	5
scaffold_5	alternate_exon	18759573	18759850	+	asmbl_44935	none	STRG.6997.2	1	STRG.6997.1,Trinity_GG_3850_c0_g1_i1,blat.proc3829873.chain_3153	3
scaffold_4	retained_exon	18931853	18931954	-	asmbl_42144	none	STRG.5473.1,blat.proc3829889.chain_1516	2	STRG.5473.2,blat.proc3829889.chain_1515	2
scaffold_12	retained_exon	3008647	3008798	-	asmbl_7479	none	STRG.14536.1,blat.proc3829893.chain_2902	2	STRG.14536.2	1
scaffold_3	alt_donor	7711275	7711276	-	asmbl_38933	none	blat.proc3829887.chain_3175	1	STRG.3361.1,STRG.3361.2,blat.proc3829887.chain_3171,blat.proc3829887.chain_3172,blat.proc3829887.chain_3173,blat.proc3829887.chain_3174,blat.proc3829887.chain_3176,blat.proc3829887.chain_3177	8
scaffold_15	retained_intron	5144744	5144821	+	asmbl_14134	none	blat.proc3829879.chain_2836	1	STRG.18208.1,blat.proc3829879.chain_2838,blat.proc3829879.chain_2839	3
scaffold_1	starts_in_intron	43930	43930	-	asmbl_1	none	STRG.19.2,Trinity_GG_17053_c2_g1_i1,blat.proc3829885.chain_3736	3	STRG.19.1,STRG.19.3,blat.proc3829885.chain_3729,blat.proc3829885.chain_3731,blat.proc3829885.chain_3732	5
scaffold_1	spliced_intron	854652	854820	+	asmbl_1425,asmbl_1426,asmbl_1427	none	STRG.42.1,STRG.42.3,STRG.42.5	3	STRG.42.2,STRG.42.4,STRG.42.6,Trinity_GG_38_c0_g1_i9,blat.proc3829871.chain_70	5
scaffold_6	spliced_intron	8172176	8172279	-	asmbl_48474,asmbl_48475,asmbl_48476,asmbl_48479,asmbl_48480,asmbl_48481	none	STRG.7691.1,STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3715,blat.proc3829889.chain_3716,blat.proc3829889.chain_3724,blat.proc3829889.chain_3725	7	Trinity_GG_21366_c0_g1_i6,blat.proc3829889.chain_3718	2
scaffold_1	retained_exon	10949746	10950201	+	asmbl_2025,asmbl_2031	none	STRG.713.3,blat.proc3829871.chain_749,blat.proc3829871.chain_752	3	STRG.713.1,blat.proc3829871.chain_751	2
scaffold_7	retained_intron	13866490	13867075	-	asmbl_50137	none	STRG.9469.2,blat.proc3829891.chain_1675	2	blat.proc3829891.chain_1674	1
scaffold_12	retained_exon	15678771	15678890	-	asmbl_8231,asmbl_8236	none	STRG.15344.4,STRG.15344.5,blat.proc3829895.chain_21	3	STRG.15344.3,blat.proc3829895.chain_19	2
scaffold_28	alt_donor	819755	819756	-	asmbl_37264	none	STRG.29275.1,blat.proc3829901.chain_2313	2	STRG.29275.2	1
scaffold_16	alt_acceptor	6143793	6143794	+	asmbl_17076	none	STRG.19342.4	1	STRG.19342.1,STRG.19342.2,STRG.19342.3,blat.proc3829881.chain_208,blat.proc3829881.chain_209,blat.proc3829881.chain_210,blat.proc3829881.chain_212,blat.proc3829881.chain_214	8
scaffold_21	retained_intron	8529725	8529850	+	asmbl_28830	none	blat.proc3829883.chain_1389	1	STRG.24375.1,blat.proc3829883.chain_1391,blat.proc3829883.chain_1392,blat.proc3829883.chain_1393	4
scaffold_9	alt_donor	9605180	9605181	-	asmbl_55180	none	STRG.11317.2	1	STRG.11317.1,Trinity_GG_23259_c0_g1_i1,blat.proc3829891.chain_3421	3
scaffold_15	alternate_exon	14749284	14749452	-	asmbl_15763	none	STRG.18886.3	1	STRG.18886.1,STRG.18886.2,blat.proc3829895.chain_3654,blat.proc3829895.chain_3655	4
scaffold_1	alt_donor	7441592	7441593	-	asmbl_447	none	STRG.520.2	1	STRG.520.1,blat.proc3829887.chain_409	2
scaffold_2	retained_intron	16280177	16280329	+	asmbl_25131,asmbl_25134	none	blat.proc3829871.chain_2780,blat.proc3829871.chain_2784	2	STRG.2564.1,STRG.2564.3,blat.proc3829871.chain_2777,blat.proc3829871.chain_2781,blat.proc3829871.chain_2782,blat.proc3829871.chain_2783,blat.proc3829871.chain_2785,blat.proc3829871.chain_2786	8
scaffold_21	alternate_exon	823657	833404	+	asmbl_28332	none	STRG.23762.1,blat.proc3829883.chain_911	2	STRG.23762.3	1
scaffold_28	retained_exon	7747361	7747553	-	asmbl_37738	none	STRG.29822.2	1	STRG.29822.1,blat.proc3829901.chain_2849	2
scaffold_10	spliced_intron	6070501	6070618	-	asmbl_3340,asmbl_3341,asmbl_3345,asmbl_3346,asmbl_3347,asmbl_3348	none	STRG.12437.1,STRG.12437.2,STRG.12437.3,blat.proc3829893.chain_920,blat.proc3829893.chain_922,blat.proc3829893.chain_923,blat.proc3829893.chain_924	7	blat.proc3829893.chain_918	1
scaffold_18	spliced_intron	11326733	11326957	+	asmbl_20965,asmbl_20966	none	STRG.21666.2,blat.proc3829881.chain_2648	2	STRG.21666.1,blat.proc3829881.chain_2651,blat.proc3829881.chain_2659	3
scaffold_5	retained_intron	15462792	15463060	-	asmbl_46058	none	Trinity_GG_20794_c1_g1_i1,blat.proc3829889.chain_2792	2	STRG.6726.1,STRG.6726.2,blat.proc3829889.chain_2790,blat.proc3829889.chain_2791	4
scaffold_16	starts_in_intron	6096803	6096803	-	asmbl_16315	none	STRG.19329.2	1	STRG.19329.1,blat.proc3829897.chain_379,blat.proc3829897.chain_380,blat.proc3829897.chain_382,blat.proc3829897.chain_383,blat.proc3829897.chain_384	6
scaffold_28	starts_in_intron	3851456	3851456	-	asmbl_37500,asmbl_37503	none	STRG.29564.2,Trinity_GG_33516_c0_g1_i4,blat.proc3829901.chain_2566	3	STRG.29564.1	1
scaffold_14	alternate_exon	11076983	11077064	-	asmbl_13428	none	STRG.17431.2	1	STRG.17431.3,blat.proc3829895.chain_2140	2
scaffold_18	retained_intron	5725934	5726148	+	asmbl_20629	none	Trinity_GG_11740_c0_g1_i2,blat.proc3829881.chain_2230	2	STRG.21309.1,Trinity_GG_11740_c0_g1_i1,blat.proc3829881.chain_2231	3
scaffold_25	starts_in_intron	1438023	1438023	-	asmbl_34022	none	blat.proc3829901.chain_407	1	STRG.27160.1,Trinity_GG_32182_c0_g1_i1,blat.proc3829901.chain_408	3
scaffold_2	retained_intron	12727849	12728348	-	asmbl_23494	none	blat.proc3829887.chain_2192	1	STRG.2326.1,blat.proc3829887.chain_2193	2
scaffold_6	ends_in_intron	12550266	12550266	-	asmbl_48762	none	blat.proc3829891.chain_322	1	STRG.8010.1,STRG.8010.2,STRG.8010.3	3
scaffold_5	alt_donor	6289654	6289655	+	asmbl_44081	none	STRG.6032.1	1	Trinity_GG_3287_c0_g1_i1,blat.proc3829873.chain_2167	2
scaffold_16	ends_in_intron	311611	311611	-	asmbl_16020,asmbl_16021,asmbl_16024	none	STRG.19011.3,STRG.19011.4,blat.proc3829897.chain_56,blat.proc3829897.chain_57	4	STRG.19011.1,STRG.19011.2	2
scaffold_7	alt_acceptor	18360611	18360612	-	asmbl_50283	none	blat.proc3829891.chain_1905,blat.proc3829891.chain_1906	2	STRG.9654.1,STRG.9654.2	2
scaffold_22	alternate_exon	6951181	6951217	+	asmbl_29434	none	STRG.24997.1,blat.proc3829883.chain_2062	2	STRG.24997.2,blat.proc3829883.chain_2063	2
scaffold_10	alt_acceptor	10503091	10503092	-	asmbl_3647	none	STRG.12727.2	1	STRG.12727.1,blat.proc3829893.chain_1231	2
scaffold_3	retained_intron	18372532	18372629	-	asmbl_39567	none	blat.proc3829889.chain_36	1	STRG.4050.1	1
scaffold_14	alt_donor	921286	921287	+	asmbl_11753,asmbl_11755	none	STRG.16748.1,STRG.16748.2,blat.proc3829879.chain_1453	3	STRG.16748.3	1
scaffold_18	starts_in_intron	202828	202828	+	asmbl_20303,asmbl_20304	none	blat.proc3829881.chain_1841,blat.proc3829881.chain_1842	2	STRG.20965.1,STRG.20965.2,blat.proc3829881.chain_1839,blat.proc3829881.chain_1843	4
scaffold_1	retained_intron	12335190	12335281	-	asmbl_713,asmbl_714	none	blat.proc3829887.chain_738,blat.proc3829887.chain_742	2	STRG.843.1,STRG.843.2,blat.proc3829887.chain_734,blat.proc3829887.chain_735,blat.proc3829887.chain_736,blat.proc3829887.chain_737,blat.proc3829887.chain_739,blat.proc3829887.chain_741,blat.proc3829887.chain_743,blat.proc3829887.chain_744,blat.proc3829887.chain_745,blat.proc3829887.chain_746	12
scaffold_5	retained_exon	8566223	8566305	+	asmbl_44215	none	STRG.6188.1,blat.proc3829873.chain_2337	2	STRG.6188.2	1
scaffold_19	retained_exon	12079283	12079387	-	asmbl_21660	none	STRG.22521.1,Trinity_GG_29514_c0_g1_i1,blat.proc3829897.chain_3153	3	STRG.22521.2	1
scaffold_19	retained_intron	628249	628359	-	asmbl_21192,asmbl_21193,asmbl_21194	none	STRG.21833.1,STRG.21833.2,STRG.21833.3,Trinity_GG_29190_c0_g1_i1,blat.proc3829897.chain_2601	5	Trinity_GG_29190_c0_g1_i2,blat.proc3829897.chain_2603	2
scaffold_21	alternate_exon	10119142	10120323	+	asmbl_28870	none	STRG.24462.1,blat.proc3829883.chain_1540	2	STRG.24462.2,STRG.24462.3,blat.proc3829883.chain_1541	3
scaffold_14	spliced_intron	13223477	13223628	+	asmbl_12445,asmbl_12450,asmbl_12451,asmbl_12453	none	STRG.17600.1,STRG.17600.3,STRG.17600.4,STRG.17600.5,blat.proc3829879.chain_2203,blat.proc3829879.chain_2205	6	STRG.17600.2,STRG.17600.6,blat.proc3829879.chain_2201,blat.proc3829879.chain_2202	4
scaffold_11	spliced_intron	9020369	9020489	-	asmbl_6885,asmbl_6886,asmbl_6888,asmbl_6890	none	STRG.13926.1,STRG.13926.2,blat.proc3829893.chain_2277,blat.proc3829893.chain_2278,blat.proc3829893.chain_2279	5	blat.proc3829893.chain_2276	1
scaffold_12	starts_in_intron	4983811	4983811	+	asmbl_8591	none	blat.proc3829877.chain_3080	1	STRG.14656.1,STRG.14656.2,blat.proc3829877.chain_3082,blat.proc3829877.chain_3086	4
scaffold_11	alternate_exon	11045348	11045395	-	asmbl_6990	none	STRG.14055.2	1	STRG.14055.1,STRG.14055.3	2
scaffold_8	retained_intron	16501928	16502016	-	asmbl_53412	none	Trinity_GG_22960_c0_g1_i7,blat.proc3829891.chain_2861	2	STRG.10621.1,STRG.10621.2,STRG.10621.3,STRG.10621.4,STRG.10621.5,Trinity_GG_22960_c0_g1_i18,Trinity_GG_22960_c0_g1_i19,Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2857,blat.proc3829891.chain_2859,blat.proc3829891.chain_2860,blat.proc3829891.chain_2862,blat.proc3829891.chain_2863,blat.proc3829891.chain_2864,blat.proc3829891.chain_2865,blat.proc3829891.chain_2867,blat.proc3829891.chain_2868,blat.proc3829891.chain_2869,blat.proc3829891.chain_2870,blat.proc3829891.chain_2871,blat.proc3829891.chain_2872	25
scaffold_1	skipped_exon	3270179	3270864	-	asmbl_139,asmbl_141	none	STRG.199.1,blat.proc3829887.chain_97,blat.proc3829887.chain_99	3	STRG.199.3	1
scaffold_14	retained_intron	8755233	8755448	-	asmbl_13325,asmbl_13327	none	STRG.17300.1,STRG.17300.2	2	blat.proc3829895.chain_1957	1
scaffold_21	starts_in_intron	3170261	3170261	+	asmbl_28485	none	Trinity_GG_13242_c0_g1_i12,blat.proc3829883.chain_1057	2	STRG.23945.1,STRG.23945.2,STRG.23945.3,STRG.23945.6,blat.proc3829883.chain_1048,blat.proc3829883.chain_1049,blat.proc3829883.chain_1050,blat.proc3829883.chain_1051,blat.proc3829883.chain_1052,blat.proc3829883.chain_1053,blat.proc3829883.chain_1054,blat.proc3829883.chain_1055,blat.proc3829883.chain_1056	13
scaffold_17	alt_donor	14877259	14877260	+	asmbl_18549	none	STRG.20945.1	1	STRG.20945.2	1
scaffold_28	ends_in_intron	3279855	3279855	-	asmbl_37468	none	blat.proc3829901.chain_2625	1	STRG.29521.1,blat.proc3829901.chain_2626	2
scaffold_13	alt_acceptor	16140664	16140665	+	asmbl_11536	none	STRG.16641.2	1	STRG.16641.1,Trinity_GG_9161_c0_g1_i1,Trinity_GG_9161_c0_g1_i2,blat.proc3829879.chain_1368,blat.proc3829879.chain_1369	5
scaffold_6	alternate_exon	15945071	15946118	+	asmbl_47621	none	STRG.8316.2	1	blat.proc3829891.chain_588	1
scaffold_1	alternate_exon	20733012	20733100	-	asmbl_1195	none	STRG.1416.1,blat.proc3829887.chain_1295	2	STRG.1416.2,blat.proc3829887.chain_1294	2
scaffold_19	spliced_intron	12437236	12437460	+	asmbl_22603,asmbl_22608,asmbl_22609,asmbl_22610	none	STRG.22558.1,blat.proc3829881.chain_3516,blat.proc3829881.chain_3517,blat.proc3829881.chain_3518,blat.proc3829881.chain_3519	5	blat.proc3829881.chain_3515,blat.proc3829881.chain_3520	2
scaffold_12	retained_intron	9987993	9988214	-	asmbl_7839	none	blat.proc3829893.chain_3345	1	STRG.14957.3,blat.proc3829893.chain_3344,blat.proc3829893.chain_3347	3
scaffold_9	starts_in_intron	16566794	16566794	-	asmbl_55551	none	blat.proc3829893.chain_83	1	STRG.11797.1,STRG.11797.2,STRG.11797.3,STRG.11797.4,STRG.11797.5,STRG.11797.6,Trinity_GG_23481_c0_g3_i1,Trinity_GG_23481_c0_g3_i5,blat.proc3829893.chain_84,blat.proc3829893.chain_85,blat.proc3829893.chain_86	11
scaffold_12	spliced_intron	10187619	10188527	-	asmbl_7859,asmbl_7865	none	STRG.14979.1,blat.proc3829893.chain_3401,blat.proc3829893.chain_3403	3	STRG.14979.3,blat.proc3829893.chain_3402	2
scaffold_4	retained_exon	17129029	17129156	-	asmbl_42007	none	STRG.5313.1,blat.proc3829889.chain_1385	2	STRG.5313.2,Trinity_GG_19982_c0_g1_i3	2
scaffold_7	alternate_exon	6623591	6624508	+	asmbl_50755	none	STRG.8925.3,Trinity_GG_4892_c1_g1_i1,blat.proc3829875.chain_1308	3	STRG.8925.1,STRG.8925.2,Trinity_GG_4892_c0_g1_i1,blat.proc3829875.chain_1307	4
scaffold_4	ends_in_intron	16873805	16873805	-	asmbl_41977	none	Trinity_GG_19940_c0_g2_i1,blat.proc3829889.chain_1283	2	STRG.5279.1,STRG.5279.2,blat.proc3829889.chain_1280,blat.proc3829889.chain_1282	4
scaffold_4	alt_acceptor	16317732	16317733	+	asmbl_43297	none	STRG.5205.4,Trinity_GG_2902_c0_g1_i2,blat.proc3829873.chain_1509	3	STRG.5205.1,STRG.5205.2,STRG.5205.3,blat.proc3829873.chain_1510,blat.proc3829873.chain_1512	5
scaffold_8	ends_in_intron	12194461	12194461	-	asmbl_53186	none	Trinity_GG_22786_c2_g1_i1,blat.proc3829891.chain_2522	2	STRG.10397.1,blat.proc3829891.chain_2519,blat.proc3829891.chain_2520	3
scaffold_19	spliced_intron	1504585	1504605	+	asmbl_22046	none	STRG.21905.4	1	STRG.21905.1,STRG.21905.2	2
scaffold_1	retained_intron	12334913	12335043	-	asmbl_718,asmbl_721,asmbl_722	none	blat.proc3829887.chain_737,blat.proc3829887.chain_739,blat.proc3829887.chain_746	3	STRG.843.1,STRG.843.2,blat.proc3829887.chain_734,blat.proc3829887.chain_741,blat.proc3829887.chain_743,blat.proc3829887.chain_744,blat.proc3829887.chain_745	7
scaffold_17	skipped_exon	6370660	6373383	+	asmbl_17978	none	STRG.20308.2	1	STRG.20308.1	1
scaffold_3	spliced_intron	18937840	18937873	+	asmbl_40708	none	STRG.4063.1	1	blat.proc3829873.chain_426	1
scaffold_11	alternate_exon	15804376	15804428	+	asmbl_6112	none	STRG.14308.2	1	STRG.14308.1	1
scaffold_15	skipped_exon	9666417	9668414	-	asmbl_15414,asmbl_15416	none	STRG.18467.1,STRG.18467.2,blat.proc3829895.chain_3195	3	STRG.18467.3	1
scaffold_15	starts_in_intron	12436004	12436004	+	asmbl_14514	none	blat.proc3829879.chain_3290	1	STRG.18688.1,blat.proc3829879.chain_3278,blat.proc3829879.chain_3280,blat.proc3829879.chain_3286,blat.proc3829879.chain_3291	5
scaffold_24	spliced_intron	10604358	10604689	+	asmbl_32581,asmbl_32583,asmbl_32584	none	STRG.27008.1,blat.proc3829885.chain_140,blat.proc3829885.chain_141,blat.proc3829885.chain_142	4	STRG.27008.2,blat.proc3829885.chain_139	2
scaffold_27	alt_donor	4161179	4161180	-	asmbl_36900	none	STRG.28855.1,blat.proc3829901.chain_2050	2	STRG.28855.2	1
scaffold_2	alt_donor	8855721	8855722	+	asmbl_24680	none	STRG.2138.2,Trinity_GG_1207_c0_g1_i2,blat.proc3829871.chain_2245	3	STRG.2138.1,Trinity_GG_1207_c0_g1_i1,blat.proc3829871.chain_2246	3
scaffold_14	ends_in_intron	10693695	10693695	+	asmbl_12321	none	blat.proc3829879.chain_2117	1	STRG.17404.2,STRG.17404.3,Trinity_GG_9574_c0_g1_i1,blat.proc3829879.chain_2114	4
scaffold_5	alternate_exon	10306383	10307764	+	asmbl_44338	none	STRG.6320.1,blat.proc3829873.chain_2475	2	blat.proc3829873.chain_2476	1
scaffold_1	starts_in_intron	6956500	6956500	+	asmbl_1857	none	blat.proc3829871.chain_523	1	STRG.492.1,blat.proc3829871.chain_522	2
scaffold_17	starts_in_intron	9847189	9847189	-	asmbl_19253	none	STRG.20594.2,blat.proc3829897.chain_1533	2	STRG.20594.1,blat.proc3829897.chain_1532	2
scaffold_17	retained_intron	9004119	9005702	+	asmbl_18182,asmbl_18183	none	STRG.20513.2,blat.proc3829881.chain_1320	2	STRG.20513.1,STRG.20513.3,blat.proc3829881.chain_1319,blat.proc3829881.chain_1321	4
scaffold_7	retained_intron	8296258	8296345	-	asmbl_49806	none	STRG.9056.3,Trinity_GG_22080_c0_g1_i2,blat.proc3829891.chain_1236	3	STRG.9056.2,STRG.9056.4,blat.proc3829891.chain_1237,blat.proc3829891.chain_1238	4
scaffold_18	starts_in_intron	646196	646196	+	asmbl_20341	none	Trinity_GG_11517_c0_g1_i4,blat.proc3829881.chain_1788	2	STRG.20994.1,STRG.20994.2,Trinity_GG_11517_c0_g1_i1,Trinity_GG_11517_c0_g1_i6,blat.proc3829881.chain_1786,blat.proc3829881.chain_1789	6
scaffold_5	retained_intron	19371162	19371247	-	asmbl_46280	none	STRG.7028.2,Trinity_GG_20939_c0_g1_i3,blat.proc3829889.chain_3035	3	STRG.7028.1,STRG.7028.3,Trinity_GG_20939_c0_g1_i1,blat.proc3829889.chain_3036	4
scaffold_27	alternate_exon	2882124	2882465	+	asmbl_36105	none	blat.proc3829885.chain_1819	1	STRG.28753.3,blat.proc3829885.chain_1821	2
scaffold_8	spliced_intron	11810649	11810780	+	asmbl_52255,asmbl_52257	none	STRG.10378.1,blat.proc3829875.chain_2926,blat.proc3829875.chain_2927	3	blat.proc3829875.chain_2928	1
scaffold_19	ends_in_intron	5647485	5647485	-	asmbl_21395	none	STRG.22118.2	1	STRG.22118.1,blat.proc3829897.chain_2823	2
scaffold_26	skipped_exon	9841126	9842483	-	asmbl_35069	none	STRG.28525.2	1	STRG.28525.1,Trinity_GG_32930_c0_g1_i1,blat.proc3829901.chain_1622	3
scaffold_14	spliced_intron	15638709	15638796	+	asmbl_12616	none	STRG.17791.1,Trinity_GG_9788_c0_g1_i1,blat.proc3829879.chain_2494	3	STRG.17791.2	1
scaffold_11	retained_exon	3496723	3497052	+	asmbl_5401,asmbl_5402	none	STRG.13472.2,STRG.13472.3	2	STRG.13472.4,blat.proc3829877.chain_1902	2
scaffold_19	retained_intron	7366595	7366687	-	asmbl_21449	none	Trinity_GG_29400_c0_g1_i1,blat.proc3829897.chain_2960	2	STRG.22206.1,blat.proc3829897.chain_2961	2
scaffold_13	spliced_intron	2571207	2571311	+	asmbl_10609,asmbl_10612	none	STRG.15550.1,Trinity_GG_8519_c0_g1_i1,blat.proc3829879.chain_191,blat.proc3829879.chain_192	4	Trinity_GG_8519_c0_g1_i3,Trinity_GG_8519_c0_g1_i8,blat.proc3829879.chain_188,blat.proc3829879.chain_189,blat.proc3829879.chain_190,blat.proc3829879.chain_193,blat.proc3829879.chain_194,blat.proc3829879.chain_195	8
scaffold_5	spliced_intron	10132156	10132315	+	asmbl_44322,asmbl_44324	none	STRG.6306.1,STRG.6306.2,Trinity_GG_3405_c0_g1_i2,blat.proc3829873.chain_2386	4	Trinity_GG_3405_c0_g1_i1,blat.proc3829873.chain_2385	2
scaffold_13	skipped_exon	517905	518487	+	asmbl_10456,asmbl_10461	none	STRG.15434.2,blat.proc3829879.chain_115,blat.proc3829879.chain_116	3	STRG.15434.4,STRG.15434.5	2
scaffold_15	alt_donor	6120164	6120165	-	asmbl_15264	none	STRG.18268.1	1	STRG.18268.2,blat.proc3829895.chain_3040	2
scaffold_3	alt_acceptor	947655	947656	-	asmbl_38645	none	STRG.2916.1	1	blat.proc3829887.chain_2706	1
scaffold_24	spliced_intron	879746	879842	+	asmbl_32062	none	STRG.26351.2	1	STRG.26351.1,blat.proc3829883.chain_3323	2
scaffold_13	ends_in_intron	14563575	14563575	-	asmbl_10169,asmbl_10170	none	Trinity_GG_26221_c0_g1_i2,Trinity_GG_26221_c0_g1_i4,blat.proc3829895.chain_1168,blat.proc3829895.chain_1169	4	STRG.16497.1,STRG.16497.2,STRG.16497.3,STRG.16497.4,STRG.16497.5,blat.proc3829895.chain_1167,blat.proc3829895.chain_1172	7
scaffold_17	alternate_exon	10038903	10039411	-	asmbl_19276	none	STRG.20608.2	1	STRG.20608.3,STRG.20608.5,Trinity_GG_28623_c0_g1_i2,Trinity_GG_28623_c0_g1_i4,blat.proc3829897.chain_1586,blat.proc3829897.chain_1587	6
scaffold_12	alt_donor	9236182	9236183	-	asmbl_7787,asmbl_7789,asmbl_7793,asmbl_7798	none	STRG.14912.6,STRG.14912.8,blat.proc3829893.chain_3300,blat.proc3829893.chain_3304,blat.proc3829893.chain_3305	5	STRG.14912.2,STRG.14912.3,blat.proc3829893.chain_3301,blat.proc3829893.chain_3307	4
scaffold_12	starts_in_intron	14160025	14160025	+	asmbl_9025	none	Trinity_GG_8388_c0_g1_i2,blat.proc3829877.chain_3675	2	STRG.15227.1,blat.proc3829877.chain_3676	2
scaffold_12	alt_donor	4214486	4214487	+	asmbl_8551,asmbl_8552	none	STRG.14588.2,STRG.14588.3	2	STRG.14588.1,blat.proc3829877.chain_3115,blat.proc3829877.chain_3117	3
scaffold_3	alt_donor	13833815	13833816	+	asmbl_40419	none	STRG.3723.1,blat.proc3829873.chain_125	2	blat.proc3829873.chain_126	1
scaffold_14	ends_in_intron	7304895	7304895	-	asmbl_13175	none	Trinity_GG_26572_c0_g1_i1,blat.proc3829895.chain_1740	2	STRG.17157.1,blat.proc3829895.chain_1739	2
scaffold_4	alternate_exon	4411118	4414070	+	asmbl_42577,asmbl_42591,asmbl_42593	none	STRG.4344.1,blat.proc3829873.chain_682,blat.proc3829873.chain_691,blat.proc3829873.chain_697	4	Trinity_GG_2404_c0_g1_i14,Trinity_GG_2404_c0_g1_i19,Trinity_GG_2404_c0_g1_i5,blat.proc3829873.chain_681,blat.proc3829873.chain_687,blat.proc3829873.chain_688,blat.proc3829873.chain_689,blat.proc3829873.chain_692,blat.proc3829873.chain_696	9
scaffold_3	starts_in_intron	19885820	19885820	-	asmbl_39615,asmbl_39617	none	Trinity_GG_19264_c1_g1_i7,blat.proc3829889.chain_139,blat.proc3829889.chain_140	3	STRG.4100.1,STRG.4100.4,Trinity_GG_19264_c1_g1_i1,blat.proc3829889.chain_141,blat.proc3829889.chain_144	5
scaffold_11	alternate_exon	13382288	13382316	+	asmbl_6030	none	STRG.14189.1	1	STRG.14189.2,STRG.14189.3,blat.proc3829877.chain_2692,blat.proc3829877.chain_2694	4
scaffold_22	alt_acceptor	9884821	9884822	+	asmbl_29610	none	STRG.25308.1,Trinity_GG_13993_c0_g1_i1,blat.proc3829883.chain_2293	3	STRG.25308.2	1
scaffold_15	skipped_exon	6957099	6957426	-	asmbl_15289	none	STRG.18291.2,blat.proc3829895.chain_3052	2	STRG.18291.1,blat.proc3829895.chain_3051,blat.proc3829895.chain_3053	3
scaffold_7	ends_in_intron	8694315	8694315	+	asmbl_50922	none	STRG.9093.1,Trinity_GG_5033_c0_g1_i1,blat.proc3829875.chain_1523	3	Trinity_GG_5033_c0_g1_i2,blat.proc3829875.chain_1524	2
scaffold_24	spliced_intron	4294010	4294192	+	asmbl_32193	none	STRG.26571.1,blat.proc3829883.chain_3474	2	blat.proc3829883.chain_3473	1
scaffold_9	ends_in_intron	10918281	10918281	+	asmbl_54298	none	blat.proc3829877.chain_190	1	STRG.11397.1,STRG.11397.2,blat.proc3829877.chain_186,blat.proc3829877.chain_187	4
scaffold_7	alt_donor	18783525	18783526	+	asmbl_51421,asmbl_51422,asmbl_51424	none	STRG.9691.2,STRG.9691.5,blat.proc3829875.chain_2056	3	STRG.9691.1,STRG.9691.3,STRG.9691.4	3
scaffold_9	skipped_exon	9870174	9871613	-	asmbl_55208	none	STRG.11345.1,Trinity_GG_23302_c0_g1_i4,blat.proc3829891.chain_3522	3	Trinity_GG_23302_c0_g1_i1,blat.proc3829891.chain_3519	2
scaffold_1	spliced_intron	12916164	12916271	+	asmbl_2257	none	STRG.919.1,blat.proc3829871.chain_976	2	STRG.919.2,blat.proc3829871.chain_974	2
scaffold_7	alternate_exon	4515474	4521338	+	asmbl_50619	none	STRG.8814.2	1	Trinity_GG_4850_c0_g1_i1,Trinity_GG_4850_c0_g1_i2,blat.proc3829875.chain_1225,blat.proc3829875.chain_1226	4
scaffold_13	alt_donor	15672407	15672408	+	asmbl_11506	none	STRG.16598.3	1	STRG.16598.1	1
scaffold_22	alt_donor	719943	719944	-	asmbl_29885	none	STRG.24708.1,Trinity_GG_30788_c0_g1_i1,blat.proc3829899.chain_1768	3	STRG.24708.2,Trinity_GG_30788_c0_g1_i2,blat.proc3829899.chain_1769	3
scaffold_5	ends_in_intron	1575089	1575089	+	asmbl_43801	none	blat.proc3829873.chain_1878,blat.proc3829873.chain_1880	2	STRG.5709.1,blat.proc3829873.chain_1879	2
scaffold_6	starts_in_intron	15760884	15760884	-	asmbl_49018	none	Trinity_GG_21687_c0_g1_i5	1	STRG.8311.1,STRG.8311.2	2
scaffold_10	ends_in_intron	13523525	13523525	-	asmbl_3800	none	Trinity_GG_24246_c1_g1_i1,blat.proc3829893.chain_1431	2	STRG.12938.1,blat.proc3829893.chain_1429,blat.proc3829893.chain_1430	3
scaffold_23	skipped_exon	4228322	4229663	-	asmbl_31568,asmbl_31573	none	STRG.25818.3,blat.proc3829899.chain_2943,blat.proc3829899.chain_2944	3	STRG.25818.2	1
scaffold_14	starts_in_intron	13896242	13896242	-	asmbl_13643	none	blat.proc3829895.chain_2384	1	STRG.17652.2,blat.proc3829895.chain_2387	2
scaffold_14	alternate_exon	2249561	2249588	-	asmbl_12903,asmbl_12904	none	STRG.16817.1,Trinity_GG_26430_c0_g1_i1,Trinity_GG_26430_c0_g1_i3,blat.proc3829895.chain_1512,blat.proc3829895.chain_1513	5	STRG.16817.2,Trinity_GG_26430_c0_g1_i2,blat.proc3829895.chain_1514	3
scaffold_5	retained_exon	15894284	15894311	+	asmbl_44688	none	STRG.6770.2,blat.proc3829873.chain_2801	2	STRG.6770.1,STRG.6770.3,blat.proc3829873.chain_2800	3
scaffold_7	alt_donor	10339719	10339720	-	asmbl_49931	none	STRG.9204.3	1	STRG.9204.1,STRG.9204.2,Trinity_GG_22206_c0_g1_i1,Trinity_GG_22206_c0_g1_i2,blat.proc3829891.chain_1449,blat.proc3829891.chain_1450	6
scaffold_12	spliced_intron	11690593	11690936	-	asmbl_7955	none	STRG.15080.2,blat.proc3829893.chain_3430	2	Trinity_GG_25402_c0_g1_i1,blat.proc3829893.chain_3431	2
scaffold_19	alternate_exon	12318254	12319144	+	asmbl_22583	none	STRG.22553.2,blat.proc3829881.chain_3508	2	blat.proc3829881.chain_3510	1
scaffold_23	retained_intron	10020609	10020721	+	asmbl_31120	none	blat.proc3829883.chain_3096	1	STRG.26185.1,blat.proc3829883.chain_3095,blat.proc3829883.chain_3098	3
scaffold_25	skipped_exon	2638200	2639906	+	asmbl_33392	none	blat.proc3829885.chain_234	1	STRG.27209.1,blat.proc3829885.chain_233	2
scaffold_16	alt_donor	7218214	7218215	-	asmbl_16344,asmbl_16345,asmbl_16346,asmbl_16347,asmbl_16356	none	STRG.19382.1,STRG.19382.2,STRG.19382.3,STRG.19382.4,STRG.19382.6	5	STRG.19382.5	1
scaffold_19	spliced_intron	3684557	3684940	+	asmbl_22133,asmbl_22134,asmbl_22135,asmbl_22138	none	STRG.22046.2,STRG.22046.3,STRG.22046.4,blat.proc3829881.chain_3004	4	STRG.22046.8,blat.proc3829881.chain_3002	2
scaffold_14	skipped_exon	3172564	3173432	-	asmbl_12979	none	STRG.16894.1,blat.proc3829895.chain_1632	2	STRG.16894.2,blat.proc3829895.chain_1634	2
scaffold_6	starts_in_intron	18087279	18087279	+	asmbl_47756	none	STRG.8493.4,Trinity_GG_4668_c2_g1_i1,blat.proc3829875.chain_885	3	STRG.8493.2,blat.proc3829875.chain_883	2
scaffold_7	spliced_intron	18392890	18393030	-	asmbl_50289,asmbl_50293,asmbl_50294,asmbl_50295	none	STRG.9659.3,Trinity_GG_22427_c0_g1_i11,Trinity_GG_22427_c0_g1_i5,blat.proc3829891.chain_1867,blat.proc3829891.chain_1868,blat.proc3829891.chain_1875	6	Trinity_GG_22427_c0_g1_i8,blat.proc3829891.chain_1872	2
scaffold_1	spliced_intron	10950202	10950931	+	asmbl_2025	none	STRG.713.3,blat.proc3829871.chain_749	2	STRG.713.2,STRG.713.4,blat.proc3829871.chain_748,blat.proc3829871.chain_750,blat.proc3829871.chain_753,blat.proc3829871.chain_754	6
scaffold_4	retained_intron	6283224	6283378	-	asmbl_41413	none	blat.proc3829889.chain_668	1	STRG.4498.1,STRG.4498.2,Trinity_GG_19560_c0_g1_i1,Trinity_GG_19560_c0_g1_i2,Trinity_GG_19560_c0_g1_i3,Trinity_GG_19560_c0_g1_i6,Trinity_GG_19560_c0_g1_i9,blat.proc3829889.chain_662,blat.proc3829889.chain_663,blat.proc3829889.chain_664,blat.proc3829889.chain_665,blat.proc3829889.chain_666	12
scaffold_25	alt_donor	1232268	1232269	+	asmbl_33359	none	STRG.27151.1,blat.proc3829885.chain_236	2	STRG.27151.2,blat.proc3829885.chain_235	2
scaffold_16	retained_exon	432654	432695	-	asmbl_16043,asmbl_16044,asmbl_16045,asmbl_16046,asmbl_16047,asmbl_16048,asmbl_16050,asmbl_16051,asmbl_16052,asmbl_16053	none	STRG.19039.1,blat.proc3829897.chain_17,blat.proc3829897.chain_18,blat.proc3829897.chain_19,blat.proc3829897.chain_20,blat.proc3829897.chain_21,blat.proc3829897.chain_23,blat.proc3829897.chain_24,blat.proc3829897.chain_25,blat.proc3829897.chain_26	10	blat.proc3829897.chain_27	1
scaffold_11	alt_acceptor	15631291	15631292	+	asmbl_6096,asmbl_6097,asmbl_6098	none	STRG.14287.1,blat.proc3829877.chain_2773,blat.proc3829877.chain_2774,blat.proc3829877.chain_2775	4	STRG.14287.2	1
scaffold_18	alt_donor	1512768	1512769	+	asmbl_20383,asmbl_20384	none	STRG.21033.1,STRG.21033.3,blat.proc3829881.chain_1931	3	STRG.21033.2	1
scaffold_19	alt_acceptor	12578014	12578015	-	asmbl_21729,asmbl_21730	none	STRG.22574.2,blat.proc3829897.chain_3224,blat.proc3829897.chain_3225	3	STRG.22574.1,STRG.22574.3	2
scaffold_26	alt_donor	6018214	6018215	+	asmbl_35594	none	STRG.28302.1,blat.proc3829885.chain_1339	2	STRG.28302.2,blat.proc3829885.chain_1340	2
scaffold_2	retained_intron	6766206	6766429	+	asmbl_24518	none	Trinity_GG_1102_c0_g1_i8,blat.proc3829871.chain_2009	2	STRG.2035.1,Trinity_GG_1102_c0_g1_i1,Trinity_GG_1102_c0_g1_i11,Trinity_GG_1102_c0_g1_i2,Trinity_GG_1102_c0_g1_i5,Trinity_GG_1102_c0_g1_i7,blat.proc3829871.chain_2005,blat.proc3829871.chain_2008,blat.proc3829871.chain_2010,blat.proc3829871.chain_2011,blat.proc3829871.chain_2012	11
scaffold_3	spliced_intron	19821324	19822204	-	asmbl_39607	none	blat.proc3829889.chain_161	1	STRG.4095.1,STRG.4095.2,STRG.4095.3,Trinity_GG_19272_c0_g1_i5,Trinity_GG_19272_c0_g1_i6,blat.proc3829889.chain_159,blat.proc3829889.chain_160	7
scaffold_1	retained_intron	8789817	8789913	+	asmbl_1936	none	blat.proc3829871.chain_650	1	STRG.576.1,blat.proc3829871.chain_648	2
scaffold_24	retained_intron	2787231	2787394	-	asmbl_32791	none	STRG.26467.2,Trinity_GG_31816_c0_g1_i2,blat.proc3829899.chain_3547	3	STRG.26467.1,blat.proc3829899.chain_3548	2
scaffold_28	alternate_exon	2342938	2343000	-	asmbl_37367,asmbl_37370	none	Trinity_GG_33454_c0_g1_i3,blat.proc3829901.chain_2457,blat.proc3829901.chain_2460	3	blat.proc3829901.chain_2458	1
scaffold_15	retained_exon	15857503	15857571	+	asmbl_14773,asmbl_14776,asmbl_14777,asmbl_14781	none	STRG.18964.3,STRG.18964.5,STRG.18964.6,Trinity_GG_10383_c0_g1_i3,Trinity_GG_10383_c0_g1_i7,blat.proc3829879.chain_3538,blat.proc3829879.chain_3539,blat.proc3829879.chain_3540,blat.proc3829879.chain_3542	9	STRG.18964.2,Trinity_GG_10383_c0_g1_i8,blat.proc3829879.chain_3544	3
scaffold_21	alt_acceptor	705967	705968	-	asmbl_27380	none	Trinity_GG_30242_c0_g1_i8,blat.proc3829899.chain_813	2	STRG.23751.1,Trinity_GG_30242_c0_g2_i1,blat.proc3829899.chain_811,blat.proc3829899.chain_818	4
scaffold_3	retained_exon	6170991	6171653	-	asmbl_38855,asmbl_38856,asmbl_38859	none	blat.proc3829887.chain_2941,blat.proc3829887.chain_2942,blat.proc3829887.chain_2945	3	blat.proc3829887.chain_2944,blat.proc3829887.chain_2946	2
scaffold_13	retained_intron	2340633	2340911	+	asmbl_10574,asmbl_10577,asmbl_10586	none	STRG.15543.10,STRG.15543.11,blat.proc3829879.chain_163,blat.proc3829879.chain_164	4	STRG.15543.9	1
scaffold_27	alternate_exon	4803354	4803608	-	asmbl_36928	none	STRG.28895.3,Trinity_GG_33154_c1_g1_i1,blat.proc3829901.chain_2011	3	STRG.28895.2	1
scaffold_21	retained_intron	3824094	3824282	-	asmbl_27575,asmbl_27576	none	STRG.23959.2,STRG.23959.4,blat.proc3829899.chain_1041,blat.proc3829899.chain_1045	4	STRG.23959.3,blat.proc3829899.chain_1044,blat.proc3829899.chain_1046	3
scaffold_9	retained_exon	5552113	5552128	-	asmbl_54975	none	STRG.11124.3	1	STRG.11124.1,blat.proc3829891.chain_3225,blat.proc3829891.chain_3226	3
scaffold_19	alt_acceptor	729017	729018	+	asmbl_22004,asmbl_22006,asmbl_22007	none	STRG.21851.1,STRG.21851.2,STRG.21851.3,blat.proc3829881.chain_2836	4	STRG.21851.4	1
scaffold_1	starts_in_intron	18516286	18516286	-	asmbl_1115	none	blat.proc3829887.chain_1181	1	STRG.1298.1,blat.proc3829887.chain_1182	2
scaffold_1	starts_in_intron	12745658	12745658	-	asmbl_756	none	STRG.892.2,blat.proc3829887.chain_756	2	STRG.892.1,STRG.892.5,blat.proc3829887.chain_754	3
scaffold_2	spliced_intron	14560804	14561388	+	asmbl_24982,asmbl_24983,asmbl_24984,asmbl_24985,asmbl_24986,asmbl_24987,asmbl_24989	none	STRG.2454.1,STRG.2454.2,STRG.2454.3,STRG.2454.4,STRG.2454.5,blat.proc3829871.chain_2565,blat.proc3829871.chain_2570	7	Trinity_GG_1360_c0_g2_i1,blat.proc3829871.chain_2571	2
scaffold_7	alt_acceptor	12542740	12542741	-	asmbl_50055,asmbl_50058,asmbl_50061	none	STRG.9352.1,STRG.9352.5,blat.proc3829891.chain_1570,blat.proc3829891.chain_1571	4	STRG.9352.4	1
scaffold_17	alt_acceptor	8317808	8317809	+	asmbl_18094,asmbl_18095,asmbl_18098	none	STRG.20443.2,STRG.20443.3,blat.proc3829881.chain_1250	3	blat.proc3829881.chain_1251	1
scaffold_3	starts_in_intron	5753086	5753086	+	asmbl_40039	none	Trinity_GG_1791_c0_g1_i4,blat.proc3829871.chain_3350	2	STRG.3236.1,Trinity_GG_1791_c0_g1_i1,blat.proc3829871.chain_3349	3
scaffold_19	skipped_exon	12237766	12238160	+	asmbl_22574	none	blat.proc3829881.chain_3477	1	STRG.22541.1,blat.proc3829881.chain_3479	2
scaffold_2	skipped_exon	6639380	6640322	-	asmbl_23240,asmbl_23243	none	STRG.2025.3,blat.proc3829887.chain_1945	2	STRG.2025.1,STRG.2025.2,blat.proc3829887.chain_1946,blat.proc3829887.chain_1947,blat.proc3829887.chain_1948	5
scaffold_15	alt_donor	9858079	9858080	-	asmbl_15433,asmbl_15434,asmbl_15436	none	STRG.18491.1,STRG.18491.2,STRG.18491.4,Trinity_GG_27412_c0_g1_i1,blat.proc3829895.chain_3275	5	STRG.18491.3	1
scaffold_8	alt_acceptor	9926786	9926787	-	asmbl_53073	none	STRG.10237.2	1	STRG.10237.1,blat.proc3829891.chain_2339,blat.proc3829891.chain_2340	3
scaffold_9	spliced_intron	61590	61877	-	asmbl_54769	none	blat.proc3829891.chain_2964	1	STRG.10754.1,STRG.10754.2,Trinity_GG_23008_c0_g1_i1,blat.proc3829891.chain_2963	4
scaffold_20	retained_intron	11695106	11695430	-	asmbl_27116	none	blat.proc3829899.chain_666	1	STRG.23665.1,blat.proc3829899.chain_667	2
scaffold_22	starts_in_intron	4231811	4231811	-	asmbl_29988	none	blat.proc3829899.chain_1975	1	STRG.24838.2,STRG.24838.3,STRG.24838.4,blat.proc3829899.chain_1976	4
scaffold_21	ends_in_intron	8518701	8518701	-	asmbl_27946	none	Trinity_GG_30572_c0_g1_i2,blat.proc3829899.chain_1402	2	STRG.24362.1,STRG.24362.2,blat.proc3829899.chain_1404,blat.proc3829899.chain_1405	4
scaffold_4	alternate_exon	5079072	5079218	+	asmbl_42662	none	STRG.4396.1,Trinity_GG_2440_c0_g1_i2,blat.proc3829873.chain_774	3	STRG.4396.2,Trinity_GG_2440_c0_g1_i1,blat.proc3829873.chain_773	3
scaffold_2	ends_in_intron	13900352	13900352	-	asmbl_23551	none	Trinity_GG_18354_c2_g1_i1,blat.proc3829887.chain_2292	2	STRG.2382.1,STRG.2382.2,blat.proc3829887.chain_2287,blat.proc3829887.chain_2288,blat.proc3829887.chain_2289,blat.proc3829887.chain_2290	6
scaffold_4	alternate_exon	4411168	4414070	+	asmbl_42589	none	STRG.4344.4	1	Trinity_GG_2404_c0_g1_i14,Trinity_GG_2404_c0_g1_i19,Trinity_GG_2404_c0_g1_i5,blat.proc3829873.chain_681,blat.proc3829873.chain_687,blat.proc3829873.chain_688,blat.proc3829873.chain_689,blat.proc3829873.chain_692,blat.proc3829873.chain_696	9
scaffold_17	ends_in_intron	9179399	9179399	+	asmbl_18191	none	Trinity_GG_11241_c0_g1_i1,blat.proc3829881.chain_1315	2	STRG.20528.1,blat.proc3829881.chain_1316	2
scaffold_13	alt_donor	7443101	7443102	+	asmbl_11033	none	STRG.16025.2,blat.proc3829879.chain_783	2	STRG.16025.1,blat.proc3829879.chain_784	2
scaffold_17	retained_intron	793926	794149	+	asmbl_17703	none	Trinity_GG_10882_c0_g1_i2,blat.proc3829881.chain_712	2	STRG.19917.1,STRG.19917.2	2
scaffold_19	alt_acceptor	13372921	13372922	+	asmbl_22684	none	STRG.22644.3	1	STRG.22644.1,STRG.22644.2,Trinity_GG_12484_c0_g1_i2,blat.proc3829881.chain_3530	4
scaffold_26	skipped_exon	6703883	6704797	-	asmbl_34974	none	STRG.28358.3	1	STRG.28358.1,STRG.28358.2,blat.proc3829901.chain_1521,blat.proc3829901.chain_1524	4
scaffold_16	spliced_intron	8296144	8296212	+	asmbl_17185	none	STRG.19456.2	1	STRG.19456.1	1
scaffold_22	alt_donor	7417363	7417364	-	asmbl_30159	none	STRG.25062.1,blat.proc3829899.chain_2151	2	STRG.25062.2,blat.proc3829899.chain_2148	2
scaffold_25	alt_acceptor	3084202	3084203	-	asmbl_34075,asmbl_34081	none	STRG.27230.2,blat.proc3829901.chain_490	2	STRG.27230.1,STRG.27230.3,blat.proc3829901.chain_488,blat.proc3829901.chain_489	4
scaffold_10	alternate_exon	1494143	1497553	-	asmbl_2978	none	STRG.12017.2,blat.proc3829893.chain_390	2	Trinity_GG_23657_c0_g1_i7,blat.proc3829893.chain_391	2
scaffold_26	alt_acceptor	9772791	9772792	+	asmbl_35785,asmbl_35786,asmbl_35790	none	STRG.28501.10,STRG.28501.5,blat.proc3829885.chain_1434	3	STRG.28501.1,STRG.28501.6,blat.proc3829885.chain_1432,blat.proc3829885.chain_1437	4
scaffold_2	alternate_exon	16361516	16361551	+	asmbl_25158	none	Trinity_GG_1456_c0_g1_i2,blat.proc3829871.chain_2762	2	STRG.2574.1,STRG.2574.2,STRG.2574.3,Trinity_GG_1456_c0_g1_i1,Trinity_GG_1456_c0_g1_i3,blat.proc3829871.chain_2763,blat.proc3829871.chain_2764	7
scaffold_13	retained_intron	2270688	2270802	-	asmbl_9404,asmbl_9405	none	blat.proc3829895.chain_310,blat.proc3829895.chain_317	2	STRG.15533.1,STRG.15533.2,STRG.15533.3,blat.proc3829895.chain_308,blat.proc3829895.chain_311	5
scaffold_1	starts_in_intron	3649947	3649947	+	asmbl_1621	none	blat.proc3829871.chain_237	1	STRG.228.1,STRG.228.2,blat.proc3829871.chain_238,blat.proc3829871.chain_239	4
scaffold_1	ends_in_intron	11396258	11396258	+	asmbl_2086	none	blat.proc3829871.chain_764	1	STRG.746.1,blat.proc3829871.chain_766	2
scaffold_14	alternate_exon	9297977	9298058	-	asmbl_13358,asmbl_13359	none	STRG.17324.4,blat.proc3829895.chain_2050	2	STRG.17324.1,STRG.17324.2,STRG.17324.3,blat.proc3829895.chain_2044,blat.proc3829895.chain_2046,blat.proc3829895.chain_2047,blat.proc3829895.chain_2048,blat.proc3829895.chain_2049,blat.proc3829895.chain_2051,blat.proc3829895.chain_2052	10
scaffold_28	alt_donor	816773	816774	-	asmbl_37262	none	STRG.29276.1	1	blat.proc3829901.chain_2369	1
scaffold_17	alt_donor	8210545	8210546	-	asmbl_19124	none	STRG.20431.1,blat.proc3829897.chain_1411	2	STRG.20431.2,blat.proc3829897.chain_1409	2
scaffold_21	alt_donor	7964075	7964076	-	asmbl_27894	none	STRG.24318.2,blat.proc3829899.chain_1410	2	STRG.24318.3	1
scaffold_25	alt_donor	4117390	4117391	+	asmbl_33471,asmbl_33472	none	STRG.27327.1,blat.proc3829885.chain_276,blat.proc3829885.chain_277	3	STRG.27327.2	1
scaffold_28	skipped_exon	7747035	7748172	-	asmbl_37736	none	STRG.29822.1,blat.proc3829901.chain_2849	2	STRG.29822.2	1
scaffold_11	alternate_exon	4334218	4334365	-	asmbl_6573,asmbl_6574,asmbl_6575	none	STRG.13521.1,STRG.13521.2,blat.proc3829893.chain_1998,blat.proc3829893.chain_2001	4	STRG.13521.3	1
scaffold_15	starts_in_intron	7185685	7185685	-	asmbl_15300	none	blat.proc3829895.chain_3049	1	STRG.18299.1,blat.proc3829895.chain_3048,blat.proc3829895.chain_3050	3
scaffold_10	retained_intron	13767257	13767588	+	asmbl_4888	none	Trinity_GG_7138_c0_g1_i1,blat.proc3829877.chain_1515	2	STRG.12958.1,Trinity_GG_7138_c0_g1_i2,blat.proc3829877.chain_1514	3
scaffold_17	alt_acceptor	12365094	12365095	+	asmbl_18407	none	STRG.20775.1,blat.proc3829881.chain_1561	2	Trinity_GG_11376_c0_g1_i3,blat.proc3829881.chain_1560	2
scaffold_5	ends_in_intron	14794517	14794517	-	asmbl_46006	none	blat.proc3829889.chain_2711	1	STRG.6674.1,blat.proc3829889.chain_2709,blat.proc3829889.chain_2710	3
scaffold_27	starts_in_intron	1721682	1721682	-	asmbl_36731	none	blat.proc3829901.chain_1836	1	STRG.28642.1,blat.proc3829901.chain_1837	2
scaffold_3	retained_intron	16072334	16072424	+	asmbl_40566	none	STRG.3888.3	1	STRG.3888.1,STRG.3888.2,blat.proc3829873.chain_286,blat.proc3829873.chain_287	4
scaffold_18	starts_in_intron	4724408	4724408	-	asmbl_19859	none	blat.proc3829897.chain_2123	1	STRG.21251.1,blat.proc3829897.chain_2124	2
scaffold_7	spliced_intron	12412171	12412608	+	asmbl_51138	none	STRG.9333.2,Trinity_GG_5182_c0_g1_i1,blat.proc3829875.chain_1790	3	STRG.9333.1,Trinity_GG_5182_c0_g1_i2,Trinity_GG_5182_c0_g1_i3,blat.proc3829875.chain_1791,blat.proc3829875.chain_1792	5
scaffold_14	retained_intron	12593720	12594207	+	asmbl_12417	none	STRG.17564.2,Trinity_GG_9621_c0_g1_i1,blat.proc3829879.chain_2188	3	STRG.17564.3	1
scaffold_8	retained_exon	10059772	10059801	-	asmbl_53093	none	STRG.10258.1,blat.proc3829891.chain_2380	2	STRG.10258.2,blat.proc3829891.chain_2381	2
scaffold_2	spliced_intron	8874291	8874378	+	asmbl_24687,asmbl_24688	none	STRG.2139.2,STRG.2139.3,blat.proc3829871.chain_2261,blat.proc3829871.chain_2262	4	STRG.2139.1,blat.proc3829871.chain_2259,blat.proc3829871.chain_2260	3
scaffold_15	starts_in_intron	8967059	8967059	+	asmbl_14313	none	Trinity_GG_10122_c0_g1_i3	1	STRG.18431.1	1
scaffold_9	spliced_intron	16664696	16665148	-	asmbl_55570	none	STRG.11800.1,blat.proc3829893.chain_191	2	blat.proc3829893.chain_190	1
scaffold_21	starts_in_intron	1758796	1758796	-	asmbl_27446	none	STRG.23809.1,blat.proc3829899.chain_888	2	STRG.23809.2,blat.proc3829899.chain_887	2
scaffold_8	starts_in_intron	9369921	9369921	-	asmbl_53024	none	blat.proc3829891.chain_2386	1	STRG.10194.3,STRG.10194.4,STRG.10194.5,STRG.10194.6,blat.proc3829891.chain_2387	5
scaffold_5	starts_in_intron	10884885	10884885	+	asmbl_44379	none	Trinity_GG_3468_c0_g1_i1,blat.proc3829873.chain_2507	2	STRG.6352.1,STRG.6352.2,Trinity_GG_3468_c0_g1_i3,blat.proc3829873.chain_2506,blat.proc3829873.chain_2508	5
scaffold_20	spliced_intron	8936755	8936837	-	asmbl_26936	none	STRG.23420.2	1	STRG.23420.1	1
scaffold_22	spliced_intron	4788211	4788482	-	asmbl_30043	none	STRG.24884.2,blat.proc3829899.chain_1923	2	STRG.24884.1,blat.proc3829899.chain_1922	2
scaffold_24	retained_exon	5384277	5384350	+	asmbl_32225	none	STRG.26610.1,blat.proc3829883.chain_3415	2	STRG.26610.2,blat.proc3829883.chain_3413	2
scaffold_1150	alt_donor	1342	1343	+	asmbl_7386	none	STRG.30530.2	1	STRG.30530.1,blat.proc3829885.chain_3482	2
scaffold_2	alt_acceptor	20324186	20324187	-	asmbl_23913	none	STRG.2878.2	1	STRG.2878.1,blat.proc3829887.chain_2686	2
scaffold_13	ends_in_intron	16184250	16184250	-	asmbl_10249	none	Trinity_GG_26327_c0_g1_i3,blat.proc3829895.chain_1342	2	STRG.16651.1,blat.proc3829895.chain_1341	2
scaffold_5	retained_intron	5063957	5064056	-	asmbl_45416	none	Trinity_GG_20370_c0_g1_i1,blat.proc3829889.chain_2048	2	STRG.5956.2,Trinity_GG_20370_c0_g1_i3,blat.proc3829889.chain_2047	3
scaffold_18	starts_in_intron	5550780	5550780	-	asmbl_19886	none	blat.proc3829897.chain_2132	1	STRG.21293.1	1
scaffold_8	starts_in_intron	8607073	8607073	-	asmbl_52959	none	blat.proc3829891.chain_2289	1	STRG.10108.1,blat.proc3829891.chain_2288,blat.proc3829891.chain_2290	3
scaffold_6	ends_in_intron	13192075	13192075	+	asmbl_47420,asmbl_47426	none	blat.proc3829875.chain_427,blat.proc3829875.chain_431	2	STRG.8068.1,blat.proc3829875.chain_428,blat.proc3829875.chain_429,blat.proc3829875.chain_430,blat.proc3829875.chain_432	5
scaffold_3	starts_in_intron	8168126	8168126	-	asmbl_38969	none	blat.proc3829887.chain_3148	1	blat.proc3829887.chain_3134,blat.proc3829887.chain_3136	2
scaffold_16	alt_acceptor	14677220	14677221	+	asmbl_17506	none	STRG.19857.1	1	STRG.19857.2,blat.proc3829881.chain_707,blat.proc3829881.chain_708	3
scaffold_28	alt_acceptor	3329538	3329539	+	asmbl_38169	none	STRG.29532.1	1	blat.proc3829885.chain_2685	1
scaffold_2	alt_donor	7880738	7880739	+	asmbl_24622	none	Trinity_GG_1183_c0_g1_i2,blat.proc3829871.chain_2181	2	STRG.2088.1,Trinity_GG_1183_c0_g1_i10,Trinity_GG_1183_c0_g1_i16,Trinity_GG_1183_c0_g1_i4,blat.proc3829871.chain_2178,blat.proc3829871.chain_2182,blat.proc3829871.chain_2185	7
scaffold_5	alternate_exon	4660378	4660558	-	asmbl_45365	none	STRG.5915.1	1	STRG.5915.2	1
scaffold_2	retained_intron	14277290	14277855	+	asmbl_24935	none	blat.proc3829871.chain_2545	1	STRG.2425.1,STRG.2425.2,STRG.2425.3,STRG.2425.4,blat.proc3829871.chain_2541,blat.proc3829871.chain_2542,blat.proc3829871.chain_2543	7
scaffold_4	retained_intron	17622846	17622975	+	asmbl_43409	none	STRG.5352.2,blat.proc3829873.chain_1594	2	STRG.5352.1,blat.proc3829873.chain_1595	2
scaffold_3	retained_intron	9516758	9517928	+	asmbl_40184,asmbl_40186,asmbl_40187	none	STRG.3434.2,Trinity_GG_1959_c0_g1_i3,blat.proc3829871.chain_3637,blat.proc3829871.chain_3639	4	STRG.3434.1,Trinity_GG_1959_c0_g1_i1,blat.proc3829871.chain_3641	3
scaffold_21	alt_donor	3120571	3120572	+	asmbl_28467	none	STRG.23929.1,blat.proc3829883.chain_1098,blat.proc3829883.chain_1100	3	STRG.23929.3,STRG.23929.4,Trinity_GG_13266_c0_g1_i1,blat.proc3829883.chain_1099	4
scaffold_16	spliced_intron	14510356	14510447	-	asmbl_16627,asmbl_16628,asmbl_16630,asmbl_16631	none	STRG.19819.1,Trinity_GG_28131_c0_g1_i2,blat.proc3829897.chain_771,blat.proc3829897.chain_772,blat.proc3829897.chain_773,blat.proc3829897.chain_774	6	blat.proc3829897.chain_770	1
scaffold_13	skipped_exon	13692310	13694203	-	asmbl_10119	none	STRG.16405.2,blat.proc3829895.chain_1135	2	STRG.16405.1	1
scaffold_25	starts_in_intron	4873277	4873277	-	asmbl_34214	none	STRG.27404.2	1	STRG.27404.1	1
scaffold_18	ends_in_intron	5802762	5802762	+	asmbl_20641	none	STRG.21316.1,Trinity_GG_11745_c0_g1_i2,blat.proc3829881.chain_2238	3	STRG.21316.2	1
scaffold_9	spliced_intron	12438282	12438337	+	asmbl_54414	none	STRG.11546.2	1	STRG.11546.1,Trinity_GG_6451_c0_g1_i1,blat.proc3829877.chain_329	3
scaffold_18	retained_intron	2535900	2536164	+	asmbl_20437	none	STRG.21112.2	1	STRG.21112.1,Trinity_GG_11605_c0_g1_i1,blat.proc3829881.chain_1962	3
scaffold_8	ends_in_intron	18304	18304	-	asmbl_52672	none	Trinity_GG_22476_c0_g1_i3,blat.proc3829891.chain_1961	2	STRG.9692.2,STRG.9692.3,blat.proc3829891.chain_1959,blat.proc3829891.chain_1960,blat.proc3829891.chain_1962	5
scaffold_18	alt_donor	7641331	7641332	-	asmbl_19995,asmbl_19999,asmbl_20001,asmbl_20002,asmbl_20003	none	STRG.21453.3,STRG.21453.4,STRG.21453.5,Trinity_GG_29021_c0_g1_i8,blat.proc3829897.chain_2308,blat.proc3829897.chain_2310,blat.proc3829897.chain_2311	7	STRG.21453.1,STRG.21453.2,Trinity_GG_29021_c0_g1_i10,blat.proc3829897.chain_2309,blat.proc3829897.chain_2313,blat.proc3829897.chain_2314	6
scaffold_13	alt_donor	1380176	1380177	-	asmbl_9370	none	STRG.15491.1	1	STRG.15491.2,blat.proc3829895.chain_208,blat.proc3829895.chain_210	3
scaffold_25	starts_in_intron	3630431	3630431	+	asmbl_33436	none	blat.proc3829885.chain_343	1	STRG.27294.1,STRG.27294.2,STRG.27294.3,blat.proc3829885.chain_341,blat.proc3829885.chain_342	5
scaffold_13	starts_in_intron	8911777	8911777	+	asmbl_11142	none	STRG.16150.3,blat.proc3829879.chain_823	2	STRG.16150.1,STRG.16150.2,Trinity_GG_8845_c0_g1_i3,blat.proc3829879.chain_825,blat.proc3829879.chain_826	5
scaffold_2	alternate_exon	9141173	9141261	-	asmbl_23371,asmbl_23372	none	STRG.2160.2,blat.proc3829887.chain_2072	2	STRG.2160.1,blat.proc3829887.chain_2071	2
scaffold_5	spliced_intron	19031567	19031663	-	asmbl_46260,asmbl_46269	none	STRG.7018.4,blat.proc3829889.chain_3003,blat.proc3829889.chain_3006	3	STRG.7018.6,blat.proc3829889.chain_3007	2
scaffold_24	alternate_exon	4317229	4319024	+	asmbl_32201	none	STRG.26578.3,blat.proc3829883.chain_3429,blat.proc3829883.chain_3430	3	Trinity_GG_14664_c0_g1_i1,Trinity_GG_14664_c0_g1_i2,blat.proc3829883.chain_3427,blat.proc3829883.chain_3428	4
scaffold_14	ends_in_intron	14504477	14504477	-	asmbl_13671	none	blat.proc3829895.chain_2393	1	STRG.17698.1,blat.proc3829895.chain_2392	2
scaffold_5	ends_in_intron	15765289	15765289	+	asmbl_44678	none	Trinity_GG_3692_c1_g1_i1,blat.proc3829873.chain_2883	2	STRG.6763.1,blat.proc3829873.chain_2874,blat.proc3829873.chain_2875,blat.proc3829873.chain_2876,blat.proc3829873.chain_2877,blat.proc3829873.chain_2880,blat.proc3829873.chain_2881,blat.proc3829873.chain_2882	8
scaffold_5	retained_intron	15044005	15044118	-	asmbl_46019	none	STRG.6692.4	1	STRG.6692.7,STRG.6692.8	2
scaffold_11	spliced_intron	2500321	2500529	-	asmbl_6489	none	STRG.13391.2	1	Trinity_GG_24528_c0_g1_i1,blat.proc3829893.chain_1887	2
scaffold_9	alt_acceptor	10242514	10242515	+	asmbl_54264	none	STRG.11358.1,blat.proc3829877.chain_57	2	STRG.11358.2,blat.proc3829877.chain_59	2
scaffold_28	retained_intron	4839616	4841649	+	asmbl_38243,asmbl_38245	none	STRG.29622.1,STRG.29622.3,Trinity_GG_16390_c0_g1_i1,Trinity_GG_16390_c0_g1_i2,blat.proc3829885.chain_2672,blat.proc3829885.chain_2674	6	STRG.29622.2,Trinity_GG_16390_c0_g1_i4,blat.proc3829885.chain_2671,blat.proc3829885.chain_2673	4
scaffold_12	alternate_exon	9230630	9230828	-	asmbl_7785	none	STRG.14910.2	1	STRG.14910.1,blat.proc3829893.chain_3310	2
scaffold_25	alternate_exon	7344357	7344425	+	asmbl_33669	none	STRG.27572.3	1	STRG.27572.2	1
scaffold_2	spliced_intron	16288201	16288309	+	asmbl_25140	none	blat.proc3829871.chain_2749	1	blat.proc3829871.chain_2751	1
scaffold_2	retained_intron	883173	884775	+	asmbl_24145	none	STRG.1563.2	1	STRG.1563.3	1
scaffold_1	alt_acceptor	4590159	4590160	-	asmbl_218	none	STRG.281.2	1	STRG.281.1,STRG.281.3,Trinity_GG_17136_c0_g1_i1,blat.proc3829887.chain_102	4
scaffold_17	ends_in_intron	12090156	12090156	+	asmbl_18382	none	STRG.20727.1	1	STRG.20727.2,STRG.20727.3	2
scaffold_6	starts_in_intron	13228725	13228725	+	asmbl_47443,asmbl_47446,asmbl_47449	none	STRG.8077.6,STRG.8077.7,blat.proc3829875.chain_499,blat.proc3829875.chain_503	4	STRG.8077.1,STRG.8077.2,STRG.8077.3,STRG.8077.4,STRG.8077.5,blat.proc3829875.chain_500,blat.proc3829875.chain_501,blat.proc3829875.chain_504,blat.proc3829875.chain_505,blat.proc3829875.chain_506	10
scaffold_21	alt_acceptor	6611639	6611640	-	asmbl_27763	none	STRG.24172.1,blat.proc3829899.chain_1207	2	STRG.24172.2	1
scaffold_17	ends_in_intron	9867629	9867629	-	asmbl_19262,asmbl_19263	none	STRG.20591.2,STRG.20591.3	2	STRG.20591.1,blat.proc3829897.chain_1549,blat.proc3829897.chain_1550	3
scaffold_12	retained_intron	7669932	7670077	+	asmbl_8751,asmbl_8752	none	STRG.14838.2,blat.proc3829877.chain_3333,blat.proc3829877.chain_3335	3	STRG.14838.1,Trinity_GG_8201_c0_g1_i4,Trinity_GG_8201_c0_g1_i5,blat.proc3829877.chain_3334,blat.proc3829877.chain_3336	5
scaffold_14	spliced_intron	6938531	6938657	+	asmbl_12097	none	STRG.17121.1,blat.proc3829879.chain_1865	2	blat.proc3829879.chain_1867	1
scaffold_17	alternate_exon	7130057	7130203	-	asmbl_19092	none	STRG.20373.2	1	STRG.20373.1,Trinity_GG_28474_c0_g1_i1,blat.proc3829897.chain_1347	3
scaffold_1	spliced_intron	952977	953543	+	asmbl_1442	none	STRG.49.1,blat.proc3829871.chain_78	2	Trinity_GG_41_c0_g1_i1,blat.proc3829871.chain_77	2
scaffold_18	alt_donor	7948312	7948313	-	asmbl_20026,asmbl_20029	none	STRG.21484.2,STRG.21484.4,blat.proc3829897.chain_2318	3	STRG.21484.1,blat.proc3829897.chain_2317	2
scaffold_9	alt_acceptor	15356156	15356157	+	asmbl_54532	none	STRG.11727.3	1	STRG.11727.1	1
scaffold_12	skipped_exon	14107246	14107823	-	asmbl_8108,asmbl_8111,asmbl_8112	none	Trinity_GG_25546_c0_g1_i1,Trinity_GG_25546_c0_g1_i2,Trinity_GG_25546_c0_g1_i8,blat.proc3829893.chain_3675,blat.proc3829893.chain_3677,blat.proc3829893.chain_3679	6	STRG.15225.1,blat.proc3829893.chain_3678,blat.proc3829893.chain_3680,blat.proc3829893.chain_3682	4
scaffold_4	alt_acceptor	3272765	3272766	+	asmbl_42487,asmbl_42490	none	STRG.4252.1,blat.proc3829873.chain_515,blat.proc3829873.chain_517	3	blat.proc3829873.chain_514	1
scaffold_18	spliced_intron	8912338	8912443	-	asmbl_20078,asmbl_20079,asmbl_20080,asmbl_20081,asmbl_20084,asmbl_20085	none	STRG.21550.2,STRG.21550.3,STRG.21550.4,blat.proc3829897.chain_2394,blat.proc3829897.chain_2395,blat.proc3829897.chain_2398	6	STRG.21550.6,Trinity_GG_29067_c0_g1_i1,blat.proc3829897.chain_2393	3
scaffold_10	alternate_exon	16252754	16258017	+	asmbl_4982	none	STRG.13097.2,blat.proc3829877.chain_1598	2	STRG.13097.4	1
scaffold_13	starts_in_intron	675375	675375	-	asmbl_9332	none	blat.proc3829895.chain_185	1	STRG.15437.1	1
scaffold_5	starts_in_intron	18698530	18698530	-	asmbl_46232,asmbl_46233	none	blat.proc3829889.chain_2983,blat.proc3829889.chain_2984	2	STRG.6987.1,STRG.6987.2,STRG.6987.3	3
scaffold_11	alt_acceptor	171006	171007	+	asmbl_5216,asmbl_5218,asmbl_5220	none	STRG.13231.1,STRG.13231.2,STRG.13231.4	3	STRG.13231.5	1
scaffold_6	spliced_intron	10916944	10917091	+	asmbl_47247	none	STRG.7900.4,blat.proc3829875.chain_227	2	Trinity_GG_4305_c0_g1_i6,blat.proc3829875.chain_228	2
scaffold_14	spliced_intron	2898639	2898894	+	asmbl_11864,asmbl_11865	none	STRG.16876.1,STRG.16876.2,Trinity_GG_9285_c0_g1_i1,Trinity_GG_9285_c0_g1_i2,blat.proc3829879.chain_1593,blat.proc3829879.chain_1594	6	Trinity_GG_9285_c1_g1_i1,blat.proc3829879.chain_1595	2
scaffold_12	spliced_intron	16338941	16339103	+	asmbl_9126	none	STRG.15376.2,blat.proc3829877.chain_3728	2	blat.proc3829877.chain_3727	1
scaffold_4	alternate_exon	3425371	3425570	-	asmbl_41181	none	STRG.4271.1	1	STRG.4271.2	1
scaffold_7	retained_exon	8172976	8173017	+	asmbl_50845	none	STRG.9039.2,blat.proc3829875.chain_1471	2	STRG.9039.1,blat.proc3829875.chain_1470	2
scaffold_7	alternate_exon	3333445	3334334	-	asmbl_49600	none	STRG.8726.2,blat.proc3829891.chain_1081	2	STRG.8726.3,blat.proc3829891.chain_1082	2
scaffold_12	alt_acceptor	3106226	3106227	+	asmbl_8506	none	STRG.14538.1	1	STRG.14538.2	1
scaffold_19	alt_acceptor	3191588	3191589	+	asmbl_22105	none	STRG.21994.1,Trinity_GG_12167_c0_g1_i2,blat.proc3829881.chain_2950	3	STRG.21994.2	1
scaffold_22	alt_acceptor	6121190	6121191	-	asmbl_30075,asmbl_30076	none	STRG.24954.1,STRG.24954.2,blat.proc3829899.chain_2061	3	STRG.24954.3	1
scaffold_18	alt_acceptor	13656468	13656469	-	asmbl_20210	none	STRG.21789.3	1	STRG.21789.1,STRG.21789.2	2
scaffold_15	starts_in_intron	3152209	3152209	-	asmbl_15091	none	blat.proc3829895.chain_2754	1	STRG.18082.1,Trinity_GG_27143_c0_g1_i3,blat.proc3829895.chain_2753	3
scaffold_11	skipped_exon	6063224	6064807	+	asmbl_5569	none	STRG.13658.1,blat.proc3829877.chain_2094	2	blat.proc3829877.chain_2093	1
scaffold_7	retained_exon	5183287	5183353	-	asmbl_49689	none	STRG.8845.1,blat.proc3829891.chain_1159	2	STRG.8845.3	1
scaffold_4	spliced_intron	19141911	19141983	+	asmbl_43470	none	STRG.5501.1,blat.proc3829873.chain_1729	2	blat.proc3829873.chain_1730	1
scaffold_26	spliced_intron	6320095	6320279	-	asmbl_34943	none	STRG.28312.3,blat.proc3829901.chain_1455	2	STRG.28312.1,STRG.28312.2,blat.proc3829901.chain_1454	3
scaffold_17	retained_intron	14633346	14633405	+	asmbl_18533	none	STRG.20934.2	1	STRG.20934.3	1
scaffold_6	alt_acceptor	12500076	12500077	+	asmbl_47346	none	STRG.8005.1,blat.proc3829875.chain_346	2	blat.proc3829875.chain_345	1
scaffold_26	retained_intron	5755074	5756532	+	asmbl_35564	none	blat.proc3829885.chain_1177,blat.proc3829885.chain_1178	2	STRG.28257.1	1
scaffold_11	spliced_intron	3767045	3767446	-	asmbl_6551,asmbl_6553,asmbl_6555,asmbl_6556,asmbl_6557	none	STRG.13488.1,STRG.13488.2,STRG.13488.3,STRG.13488.4,Trinity_GG_24570_c0_g1_i4,blat.proc3829893.chain_1962	6	Trinity_GG_24570_c0_g1_i1	1
scaffold_26	alt_acceptor	9083573	9083574	-	asmbl_35038	none	STRG.28453.3	1	STRG.28453.2,blat.proc3829901.chain_1595	2
scaffold_9	skipped_exon	3387052	3388058	+	asmbl_53880	none	STRG.10937.1,Trinity_GG_6065_c0_g1_i1,blat.proc3829875.chain_3385	3	blat.proc3829875.chain_3386	1
scaffold_3	alt_donor	11455066	11455067	-	asmbl_39122	none	blat.proc3829887.chain_3343	1	STRG.3579.2,blat.proc3829887.chain_3344	2
scaffold_21	starts_in_intron	5599697	5599697	-	asmbl_27708	none	blat.proc3829899.chain_1083	1	STRG.24081.1,Trinity_GG_30401_c0_g1_i3,blat.proc3829899.chain_1084	3
scaffold_28	retained_intron	9115472	9115873	-	asmbl_37820,asmbl_37821	none	STRG.29941.2,blat.proc3829901.chain_3049,blat.proc3829901.chain_3050	3	STRG.29941.1,blat.proc3829901.chain_3048	2
scaffold_23	alt_donor	3237217	3237218	+	asmbl_30731	none	STRG.25739.1,blat.proc3829883.chain_2655	2	STRG.25739.2,blat.proc3829883.chain_2654	2
scaffold_4	alt_acceptor	6602258	6602259	+	asmbl_42744,asmbl_42746	none	STRG.4520.1,blat.proc3829873.chain_857,blat.proc3829873.chain_858	3	STRG.4520.2,blat.proc3829873.chain_860	2
scaffold_5	alt_acceptor	2327396	2327397	-	asmbl_45275	none	STRG.5755.1,blat.proc3829889.chain_1843	2	STRG.5755.2	1
scaffold_12	retained_intron	16247233	16247319	+	asmbl_9120,asmbl_9122	none	STRG.15363.3,Trinity_GG_8439_c0_g1_i1,blat.proc3829879.chain_16	3	STRG.15363.1,Trinity_GG_8439_c0_g1_i2,blat.proc3829879.chain_17	3
scaffold_6	alt_acceptor	3214941	3214942	-	asmbl_48178,asmbl_48179	none	STRG.7319.2,blat.proc3829889.chain_3331,blat.proc3829889.chain_3333	3	STRG.7319.1,STRG.7319.3,blat.proc3829889.chain_3332	3
scaffold_17	starts_in_intron	3987525	3987525	-	asmbl_18878,asmbl_18879	none	blat.proc3829897.chain_1120	1	blat.proc3829897.chain_1119	1
scaffold_14	retained_intron	583074	583762	+	asmbl_11741	none	STRG.16728.1,Trinity_GG_9217_c0_g1_i3,blat.proc3829879.chain_1457	3	STRG.16728.3,Trinity_GG_9217_c0_g1_i7,blat.proc3829879.chain_1458	3
scaffold_9	alternate_exon	16574500	16574528	-	asmbl_55554	none	STRG.11799.2	1	STRG.11799.1,Trinity_GG_23525_c0_g1_i1,Trinity_GG_23525_c0_g1_i2,blat.proc3829893.chain_158,blat.proc3829893.chain_159	5
scaffold_24	starts_in_intron	9064331	9064331	+	asmbl_32491	none	Trinity_GG_14859_c0_g1_i1,blat.proc3829885.chain_12	2	STRG.26913.1,blat.proc3829885.chain_14	2
scaffold_1	retained_intron	5746244	5746355	-	asmbl_304	none	blat.proc3829887.chain_252	1	STRG.372.1,blat.proc3829887.chain_251	2
scaffold_17	retained_intron	538675	539181	+	asmbl_17670,asmbl_17674	none	STRG.19892.3,blat.proc3829881.chain_739,blat.proc3829881.chain_740	3	STRG.19892.2,blat.proc3829881.chain_742,blat.proc3829881.chain_743	3
scaffold_1	spliced_intron	10951165	10951333	+	asmbl_2025,asmbl_2027,asmbl_2028,asmbl_2030,asmbl_2031	none	STRG.713.1,STRG.713.2,STRG.713.3,blat.proc3829871.chain_749,blat.proc3829871.chain_750,blat.proc3829871.chain_751,blat.proc3829871.chain_752,blat.proc3829871.chain_753	8	STRG.713.4,blat.proc3829871.chain_748,blat.proc3829871.chain_754	3
scaffold_25	spliced_intron	4539033	4539139	+	asmbl_33511	none	blat.proc3829885.chain_415	1	Trinity_GG_15099_c0_g1_i6,blat.proc3829885.chain_412	2
scaffold_510	alt_donor	3440	3441	-	asmbl_46465	none	STRG.30341.1	1	STRG.30341.3	1
scaffold_8	spliced_intron	15734313	15734436	+	asmbl_52408,asmbl_52410	none	STRG.10571.1,Trinity_GG_5832_c0_g1_i2,Trinity_GG_5832_c0_g1_i3,blat.proc3829875.chain_2995,blat.proc3829875.chain_2996	5	Trinity_GG_5832_c0_g1_i1,blat.proc3829875.chain_2994	2
scaffold_19	starts_in_intron	7579100	7579100	+	asmbl_22275,asmbl_22284	none	STRG.22230.2,STRG.22230.3,blat.proc3829881.chain_3168	3	STRG.22230.1	1
scaffold_5	alt_donor	11079986	11079987	+	asmbl_44397,asmbl_44400	none	STRG.6389.1,blat.proc3829873.chain_2530,blat.proc3829873.chain_2531	3	STRG.6389.2,STRG.6389.3,blat.proc3829873.chain_2532,blat.proc3829873.chain_2533	4
scaffold_10	alternate_exon	9543831	9551172	+	asmbl_4676	none	STRG.12692.2,blat.proc3829877.chain_1283	2	STRG.12692.4,STRG.12692.5	2
scaffold_14	spliced_intron	6291638	6291779	+	asmbl_12043	none	STRG.17067.1,blat.proc3829879.chain_1814	2	Trinity_GG_9404_c0_g1_i4,blat.proc3829879.chain_1813	2
scaffold_21	retained_intron	3015237	3015391	+	asmbl_28457	none	blat.proc3829883.chain_1068	1	STRG.23914.1,blat.proc3829883.chain_1067	2
scaffold_27	starts_in_intron	927877	927877	-	asmbl_36668	none	blat.proc3829901.chain_1651	1	STRG.28568.1,STRG.28568.2,Trinity_GG_32939_c0_g1_i2,Trinity_GG_32939_c0_g1_i4,blat.proc3829901.chain_1649,blat.proc3829901.chain_1650	6
scaffold_24	ends_in_intron	162515	162515	-	asmbl_32694	none	Trinity_GG_31713_c0_g1_i2,blat.proc3829899.chain_3376	2	Trinity_GG_31713_c0_g1_i1,blat.proc3829899.chain_3375	2
scaffold_7	spliced_intron	4545173	4545914	+	asmbl_50626,asmbl_50627,asmbl_50628	none	STRG.8819.1,blat.proc3829875.chain_1241,blat.proc3829875.chain_1242,blat.proc3829875.chain_1244	4	blat.proc3829875.chain_1243	1
scaffold_23	spliced_intron	1576504	1576610	+	asmbl_30646	none	STRG.25617.1,blat.proc3829883.chain_2542	2	Trinity_GG_14161_c0_g1_i2,blat.proc3829883.chain_2541	2
scaffold_22	alt_acceptor	728460	728461	+	asmbl_29180	none	STRG.24711.3	1	STRG.24711.1,STRG.24711.2,Trinity_GG_13664_c0_g1_i1,blat.proc3829883.chain_1767	4
scaffold_4	starts_in_intron	16541518	16541518	-	asmbl_41943	none	blat.proc3829889.chain_1285	1	STRG.5232.1,STRG.5232.2,blat.proc3829889.chain_1286	3
scaffold_11	ends_in_intron	3255013	3255013	-	asmbl_6524	none	blat.proc3829893.chain_1870	1	STRG.13448.1,blat.proc3829893.chain_1868	2
scaffold_19	ends_in_intron	11799471	11799471	+	asmbl_22530	none	Trinity_GG_12452_c0_g1_i4,blat.proc3829881.chain_3452	2	STRG.22495.1,blat.proc3829881.chain_3453,blat.proc3829881.chain_3454	3
scaffold_17	spliced_intron	9533790	9533896	+	asmbl_18228,asmbl_18229,asmbl_18230,asmbl_18231,asmbl_18235	none	STRG.20566.1,STRG.20566.2,STRG.20566.3,STRG.20566.4,Trinity_GG_11250_c0_g1_i7,blat.proc3829881.chain_1352,blat.proc3829881.chain_1353,blat.proc3829881.chain_1356	8	Trinity_GG_11250_c0_g1_i4,blat.proc3829881.chain_1349,blat.proc3829881.chain_1350	3
scaffold_5	retained_exon	3772855	3772938	+	asmbl_43902,asmbl_43904	none	STRG.5834.3,blat.proc3829873.chain_2012	2	STRG.5834.1	1
scaffold_4	alt_acceptor	3884506	3884507	-	asmbl_41202,asmbl_41204	none	STRG.4295.1,STRG.4295.4,blat.proc3829889.chain_422	3	STRG.4295.2,STRG.4295.3,blat.proc3829889.chain_421	3
scaffold_9	skipped_exon	4203935	4206879	+	asmbl_53924	none	STRG.11013.2	1	STRG.11013.3	1
scaffold_7	starts_in_intron	4930322	4930322	+	asmbl_50650	none	blat.proc3829875.chain_1280	1	STRG.8834.1,STRG.8834.2,blat.proc3829875.chain_1275,blat.proc3829875.chain_1276,blat.proc3829875.chain_1279,blat.proc3829875.chain_1281,blat.proc3829875.chain_1282,blat.proc3829875.chain_1283	8
scaffold_8	retained_intron	9885234	9885406	+	asmbl_52120	none	blat.proc3829875.chain_2744	1	STRG.10229.1,STRG.10229.2,Trinity_GG_5690_c0_g1_i4,blat.proc3829875.chain_2741	4
scaffold_359	alt_acceptor	2542	2543	+	asmbl_40999	none	STRG.30277.1	1	blat.proc3829885.chain_3321	1
scaffold_25	ends_in_intron	4578413	4578413	+	asmbl_33517,asmbl_33518,asmbl_33519	none	STRG.27377.3,Trinity_GG_15111_c0_g1_i10,Trinity_GG_15111_c0_g1_i4,Trinity_GG_15111_c0_g1_i9,blat.proc3829885.chain_436,blat.proc3829885.chain_437,blat.proc3829885.chain_439	7	STRG.27377.1,STRG.27377.2,Trinity_GG_15111_c0_g1_i5,blat.proc3829885.chain_441	4
scaffold_25	starts_in_intron	9044241	9044241	-	asmbl_34451,asmbl_34452	none	STRG.27702.2,blat.proc3829901.chain_983,blat.proc3829901.chain_984	3	STRG.27702.1,STRG.27702.3,blat.proc3829901.chain_982,blat.proc3829901.chain_985,blat.proc3829901.chain_986,blat.proc3829901.chain_988	6
scaffold_15	ends_in_intron	4968412	4968412	-	asmbl_15181	none	Trinity_GG_27258_c0_g1_i7,blat.proc3829895.chain_2973	2	STRG.18194.3	1
scaffold_9	ends_in_intron	12778055	12778055	-	asmbl_55368	none	blat.proc3829891.chain_3669	1	STRG.11584.1,STRG.11584.2,blat.proc3829891.chain_3668	3
scaffold_1	retained_intron	14201846	14202390	+	asmbl_2322	none	STRG.1004.2,Trinity_GG_586_c0_g1_i2,Trinity_GG_586_c0_g1_i4,Trinity_GG_586_c0_g1_i9,blat.proc3829871.chain_1046,blat.proc3829871.chain_1047,blat.proc3829871.chain_1050	7	STRG.1004.3,Trinity_GG_586_c0_g1_i5,blat.proc3829871.chain_1049,blat.proc3829871.chain_1052	4
scaffold_8	alt_donor	4692774	4692775	+	asmbl_51837	none	STRG.9918.1,blat.proc3829875.chain_2355	2	STRG.9918.2,blat.proc3829875.chain_2353	2
scaffold_11	alternate_exon	8624513	8624600	-	asmbl_6848	none	STRG.13867.2,Trinity_GG_24760_c0_g1_i2	2	STRG.13867.1,Trinity_GG_24760_c0_g1_i1,blat.proc3829893.chain_2298	3
scaffold_21	starts_in_intron	8007980	8007980	+	asmbl_28793,asmbl_28794	none	Trinity_GG_13472_c0_g1_i1,blat.proc3829883.chain_1462,blat.proc3829883.chain_1466	3	STRG.24326.1,STRG.24326.2,blat.proc3829883.chain_1460,blat.proc3829883.chain_1461,blat.proc3829883.chain_1463,blat.proc3829883.chain_1465	6
scaffold_5	alt_acceptor	13023172	13023173	+	asmbl_44513	none	STRG.6522.3	1	STRG.6522.1,blat.proc3829873.chain_2618	2
scaffold_4	retained_intron	5832068	5832537	+	asmbl_42701,asmbl_42703	none	STRG.4481.1,STRG.4481.3	2	STRG.4481.2	1
scaffold_13	skipped_exon	6047203	6049582	-	asmbl_9726	none	STRG.15900.4,blat.proc3829895.chain_629	2	STRG.15900.2,blat.proc3829895.chain_628,blat.proc3829895.chain_630	3
scaffold_24	skipped_exon	10479702	10479840	+	asmbl_32567	none	blat.proc3829885.chain_114	1	STRG.26999.1,STRG.26999.2	2
scaffold_11	alt_donor	171562	171563	+	asmbl_5217,asmbl_5218,asmbl_5220	none	STRG.13231.2,STRG.13231.4,STRG.13231.5	3	STRG.13231.1	1
scaffold_13	retained_intron	3811189	3811295	-	asmbl_9548	none	blat.proc3829895.chain_410	1	STRG.15699.1,blat.proc3829895.chain_409,blat.proc3829895.chain_412	3
scaffold_22	alternate_exon	6034148	6034206	+	asmbl_29382	none	STRG.24940.2,Trinity_GG_13804_c0_g1_i3,blat.proc3829883.chain_2017	3	STRG.24940.1,Trinity_GG_13804_c0_g1_i2,blat.proc3829883.chain_2018	3
scaffold_18	retained_intron	3213856	3213934	+	asmbl_20477	none	Trinity_GG_11644_c0_g1_i1,blat.proc3829881.chain_2032	2	STRG.21149.1,blat.proc3829881.chain_2031	2
scaffold_7	starts_in_intron	1388032	1388032	-	asmbl_49538	none	STRG.8638.2	1	STRG.8638.1,blat.proc3829891.chain_921,blat.proc3829891.chain_923,blat.proc3829891.chain_924,blat.proc3829891.chain_926,blat.proc3829891.chain_927	6
scaffold_12	retained_intron	14104565	14104838	-	asmbl_8109	none	Trinity_GG_25546_c0_g1_i9,blat.proc3829893.chain_3681	2	Trinity_GG_25546_c0_g1_i2,Trinity_GG_25546_c0_g1_i8,blat.proc3829893.chain_3677,blat.proc3829893.chain_3678,blat.proc3829893.chain_3679,blat.proc3829893.chain_3680	6
scaffold_10	skipped_exon	17325221	17326440	-	asmbl_3953	none	STRG.13169.2,blat.proc3829893.chain_1574	2	STRG.13169.1,blat.proc3829893.chain_1573	2
scaffold_21	skipped_exon	731085	731628	+	asmbl_28313	none	STRG.23754.5	1	STRG.23754.1,STRG.23754.2,STRG.23754.4,Trinity_GG_13126_c0_g1_i1,blat.proc3829883.chain_853	5
scaffold_1	alt_donor	9109476	9109477	+	asmbl_1947	none	STRG.602.1,blat.proc3829871.chain_670,blat.proc3829871.chain_671	3	STRG.602.2	1
scaffold_4	retained_exon	4414044	4414706	+	asmbl_42571	none	STRG.4344.3,Trinity_GG_2404_c0_g1_i8,blat.proc3829873.chain_694,blat.proc3829873.chain_695	4	STRG.4344.2,blat.proc3829873.chain_683,blat.proc3829873.chain_685	3
scaffold_14	alternate_exon	13582513	13582579	-	asmbl_13627	none	STRG.17623.1,blat.proc3829895.chain_2370	2	STRG.17623.2,blat.proc3829895.chain_2371	2
scaffold_10	alt_donor	190593	190594	-	asmbl_2834	none	STRG.11902.2,blat.proc3829893.chain_312	2	STRG.11902.1,blat.proc3829893.chain_311	2
scaffold_26	ends_in_intron	5868509	5868509	-	asmbl_34907	none	blat.proc3829901.chain_1434	1	STRG.28272.1,blat.proc3829901.chain_1435	2
scaffold_25	alt_donor	6095935	6095936	-	asmbl_34299	none	STRG.27486.1,Trinity_GG_32415_c0_g1_i2,Trinity_GG_32415_c0_g1_i4,blat.proc3829901.chain_804,blat.proc3829901.chain_805,blat.proc3829901.chain_806	6	Trinity_GG_32415_c0_g1_i3,blat.proc3829901.chain_803	2
scaffold_21	starts_in_intron	3973400	3973400	-	asmbl_27586	none	blat.proc3829899.chain_1038	1	STRG.23966.1,STRG.23966.2,blat.proc3829899.chain_1037	3
scaffold_17	alt_donor	14546159	14546160	+	asmbl_18531	none	STRG.20918.5	1	STRG.20918.1,STRG.20918.3,STRG.20918.4,blat.proc3829881.chain_1763	4
scaffold_11	alt_donor	6574227	6574228	-	asmbl_6698	none	STRG.13689.2	1	STRG.13689.1,blat.proc3829893.chain_2134	2
scaffold_11	starts_in_intron	850515	850515	+	asmbl_5263	none	Trinity_GG_7303_c0_g1_i3,blat.proc3829877.chain_1793	2	STRG.13270.1,Trinity_GG_7303_c0_g1_i5,blat.proc3829877.chain_1792,blat.proc3829877.chain_1794	4
scaffold_4	alt_donor	13076283	13076284	+	asmbl_43109,asmbl_43114	none	STRG.4945.1,STRG.4945.2,blat.proc3829873.chain_1237	3	STRG.4945.3,blat.proc3829873.chain_1238	2
scaffold_6	alternate_exon	12554855	12554983	-	asmbl_48763	none	blat.proc3829891.chain_318	1	STRG.8010.3,blat.proc3829891.chain_322	2
scaffold_13	starts_in_intron	16437910	16437910	+	asmbl_11556	none	Trinity_GG_9187_c0_g1_i1,blat.proc3829879.chain_1409	2	STRG.16684.1,STRG.16684.2,Trinity_GG_9187_c0_g1_i5,Trinity_GG_9187_c0_g1_i6,blat.proc3829879.chain_1408,blat.proc3829879.chain_1410,blat.proc3829879.chain_1411	7
scaffold_5	alt_donor	15418252	15418253	-	asmbl_46047	none	STRG.6723.1,blat.proc3829889.chain_2796	2	STRG.6723.3	1
scaffold_1	alternate_exon	12168863	12168950	+	asmbl_2169	none	STRG.845.2	1	blat.proc3829871.chain_919,blat.proc3829871.chain_920	2
scaffold_20	ends_in_intron	11744125	11744125	-	asmbl_27118	none	STRG.23678.2,Trinity_GG_30161_c0_g1_i2,blat.proc3829899.chain_600	3	STRG.23678.1,blat.proc3829899.chain_599,blat.proc3829899.chain_601	3
scaffold_2	alt_acceptor	7881678	7881679	+	asmbl_24622	none	Trinity_GG_1183_c0_g1_i2,blat.proc3829871.chain_2181	2	STRG.2088.1,Trinity_GG_1183_c0_g1_i10,Trinity_GG_1183_c0_g1_i16,Trinity_GG_1183_c0_g1_i20,Trinity_GG_1183_c0_g1_i4,blat.proc3829871.chain_2178,blat.proc3829871.chain_2182,blat.proc3829871.chain_2183,blat.proc3829871.chain_2185	9
scaffold_9	alt_acceptor	656253	656254	+	asmbl_53770	none	STRG.10789.2,blat.proc3829875.chain_3262	2	STRG.10789.1,blat.proc3829875.chain_3263	2
scaffold_13	ends_in_intron	8012611	8012611	+	asmbl_11074	none	blat.proc3829879.chain_763	1	STRG.16066.1,blat.proc3829879.chain_761,blat.proc3829879.chain_762,blat.proc3829879.chain_764	4
scaffold_4	starts_in_intron	1972393	1972393	+	asmbl_42477	none	Trinity_GG_2351_c0_g1_i4	1	STRG.4210.1,STRG.4210.2,blat.proc3829873.chain_570,blat.proc3829873.chain_571,blat.proc3829873.chain_572	5
scaffold_11	ends_in_intron	10322840	10322840	+	asmbl_5901	none	STRG.14028.2	1	STRG.14028.1,blat.proc3829877.chain_2517	2
scaffold_3	alt_donor	6645141	6645142	+	asmbl_40056	none	STRG.3282.1,blat.proc3829871.chain_3444	2	STRG.3282.2	1
scaffold_27	alt_acceptor	2436417	2436418	+	asmbl_36044	none	STRG.28696.2	1	STRG.28696.1	1
scaffold_37	alt_acceptor	3864	3865	+	asmbl_41009	none	STRG.30008.1,blat.proc3829885.chain_3084	2	STRG.30008.2,blat.proc3829885.chain_3085	2
scaffold_11	alternate_exon	3770069	3784007	-	asmbl_6551,asmbl_6557	none	STRG.13488.1,STRG.13488.3,blat.proc3829893.chain_1962	3	STRG.13488.2	1
scaffold_2	alt_acceptor	15453316	15453317	+	asmbl_25063,asmbl_25065,asmbl_25066,asmbl_25068,asmbl_25069	none	STRG.2500.1,blat.proc3829871.chain_2680,blat.proc3829871.chain_2681,blat.proc3829871.chain_2682,blat.proc3829871.chain_2684,blat.proc3829871.chain_2685	6	STRG.2500.2,blat.proc3829871.chain_2679	2
scaffold_2	spliced_intron	7938372	7939699	+	asmbl_24635,asmbl_24636,asmbl_24639	none	STRG.2090.1,Trinity_GG_1149_c0_g1_i1,Trinity_GG_1149_c0_g1_i3,Trinity_GG_1149_c0_g1_i5,blat.proc3829871.chain_2101,blat.proc3829871.chain_2103,blat.proc3829871.chain_2104	7	Trinity_GG_1149_c0_g1_i2,Trinity_GG_1149_c0_g1_i4,blat.proc3829871.chain_2100,blat.proc3829871.chain_2102	4
scaffold_9	spliced_intron	13278875	13279273	+	asmbl_54472	none	STRG.11615.3	1	STRG.11615.1,blat.proc3829877.chain_402	2
scaffold_6	retained_exon	14116838	14116948	+	asmbl_47517	none	STRG.8168.2	1	STRG.8168.1	1
scaffold_17	alt_donor	2768312	2768313	-	asmbl_18831	none	STRG.20069.2	1	STRG.20069.1,blat.proc3829897.chain_1033	2
scaffold_24	skipped_exon	2979214	2981583	-	asmbl_32800	none	STRG.26488.2,blat.proc3829899.chain_3490	2	STRG.26488.1,blat.proc3829899.chain_3491	2
scaffold_7	starts_in_intron	13951905	13951905	+	asmbl_51270,asmbl_51271	none	Trinity_GG_5270_c0_g1_i2,Trinity_GG_5270_c0_g1_i5,blat.proc3829875.chain_1946,blat.proc3829875.chain_1947	4	STRG.9478.1	1
scaffold_2	ends_in_intron	14267331	14267331	-	asmbl_23608	none	Trinity_GG_18362_c0_g1_i4,blat.proc3829887.chain_2308	2	STRG.2420.1,blat.proc3829887.chain_2310	2
scaffold_20	spliced_intron	1671485	1671524	+	asmbl_25598	none	STRG.22891.2	1	STRG.22891.1,Trinity_GG_12623_c0_g1_i1	2
scaffold_6	spliced_intron	13877179	13877346	-	asmbl_48885	none	STRG.8130.3,blat.proc3829891.chain_433	2	STRG.8130.1	1
scaffold_3	alt_donor	10304251	10304252	+	asmbl_40216	none	STRG.3466.2	1	STRG.3466.1,STRG.3466.3,Trinity_GG_1968_c0_g2_i1,blat.proc3829871.chain_3656	4
scaffold_16	starts_in_intron	3565319	3565319	-	asmbl_16156	none	blat.proc3829897.chain_187	1	STRG.19157.1,STRG.19157.2,blat.proc3829897.chain_188,blat.proc3829897.chain_189	4
scaffold_5	alt_acceptor	19146956	19146957	-	asmbl_46272	none	STRG.7015.2	1	STRG.7015.1,blat.proc3829889.chain_3029	2
scaffold_2	alt_acceptor	7469156	7469157	-	asmbl_23284	none	Trinity_GG_18127_c0_g1_i23,blat.proc3829887.chain_1889	2	STRG.2075.3,STRG.2075.4,Trinity_GG_18127_c0_g1_i18,blat.proc3829887.chain_1893	4
scaffold_10	alternate_exon	13905288	13914728	+	asmbl_4902	none	STRG.12970.2	1	blat.proc3829877.chain_1551	1
scaffold_22	ends_in_intron	223820	223820	-	asmbl_29838,asmbl_29839	none	Trinity_GG_30815_c0_g1_i2,Trinity_GG_30815_c0_g1_i3,blat.proc3829899.chain_1814,blat.proc3829899.chain_1816	4	STRG.24671.3	1
scaffold_8	spliced_intron	9112241	9112368	-	asmbl_52993,asmbl_52995,asmbl_52996	none	STRG.10159.1,STRG.10159.2,blat.proc3829891.chain_2332,blat.proc3829891.chain_2333	4	blat.proc3829891.chain_2331	1
scaffold_3	starts_in_intron	16000813	16000813	-	asmbl_39414	none	blat.proc3829887.chain_3667	1	STRG.3873.1,blat.proc3829887.chain_3666	2
scaffold_16	alt_donor	751446	751447	-	asmbl_16066,asmbl_16068,asmbl_16069,asmbl_16070,asmbl_16071	none	STRG.19044.1,blat.proc3829897.chain_10,blat.proc3829897.chain_11,blat.proc3829897.chain_13,blat.proc3829897.chain_14,blat.proc3829897.chain_9	6	STRG.19044.2	1
scaffold_27	ends_in_intron	318094	318094	-	asmbl_36611	none	Trinity_GG_32948_c0_g1_i10,blat.proc3829901.chain_1669	2	STRG.28538.2,STRG.28538.3,STRG.28538.4,Trinity_GG_32948_c0_g1_i7,blat.proc3829901.chain_1670,blat.proc3829901.chain_1673	6
scaffold_4	spliced_intron	5228399	5230621	-	asmbl_41310	none	STRG.4417.5,blat.proc3829889.chain_437	2	STRG.4417.2,Trinity_GG_19430_c0_g1_i1,blat.proc3829889.chain_440	3
scaffold_24	alternate_exon	5936455	5947820	+	asmbl_32283	none	blat.proc3829883.chain_3535	1	blat.proc3829883.chain_3538	1
scaffold_5	alternate_exon	18514707	18515058	-	asmbl_46219	none	STRG.6974.2,blat.proc3829889.chain_2929	2	STRG.6974.3,blat.proc3829889.chain_2931	2
scaffold_1	retained_intron	8645316	8645414	-	asmbl_476,asmbl_482	none	STRG.572.3,blat.proc3829887.chain_457	2	STRG.572.1,STRG.572.2,blat.proc3829887.chain_454,blat.proc3829887.chain_456,blat.proc3829887.chain_458	5
scaffold_18	retained_exon	13113652	13113777	+	asmbl_21012,asmbl_21014	none	STRG.21741.1,STRG.21741.3,blat.proc3829881.chain_2716	3	STRG.21741.2,blat.proc3829881.chain_2715,blat.proc3829881.chain_2717	3
scaffold_2	ends_in_intron	15269223	15269223	+	asmbl_25034	none	Trinity_GG_1353_c1_g1_i1,blat.proc3829871.chain_2530	2	STRG.2481.1,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2529,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2536,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	9
scaffold_3	ends_in_intron	10627189	10627189	+	asmbl_40240	none	blat.proc3829871.chain_3603	1	STRG.3509.1,STRG.3509.2,STRG.3509.3,blat.proc3829871.chain_3607	4
scaffold_13	retained_intron	16048875	16048914	+	asmbl_11524	none	STRG.16628.3	1	blat.proc3829879.chain_1379	1
scaffold_13	skipped_exon	7942059	7942628	-	asmbl_9878	none	STRG.16057.1,blat.proc3829895.chain_784	2	STRG.16057.2,blat.proc3829895.chain_783	2
scaffold_10	skipped_exon	2675455	2675702	+	asmbl_4271	none	STRG.12077.1	1	STRG.12077.2,STRG.12077.3,blat.proc3829877.chain_790	3
scaffold_24	spliced_intron	1452917	1452990	+	asmbl_32087	none	STRG.26386.1	1	STRG.26386.2,blat.proc3829883.chain_3328	2
scaffold_11	starts_in_intron	13520367	13520367	-	asmbl_7113	none	Trinity_GG_24952_c0_g1_i1,blat.proc3829893.chain_2630	2	STRG.14197.1,blat.proc3829893.chain_2629	2
scaffold_2	spliced_intron	9791919	9792309	+	asmbl_24720,asmbl_24721,asmbl_24722,asmbl_24725,asmbl_24726	none	STRG.2185.1,Trinity_GG_1191_c0_g1_i6,blat.proc3829871.chain_2216,blat.proc3829871.chain_2217,blat.proc3829871.chain_2218,blat.proc3829871.chain_2221,blat.proc3829871.chain_2222	7	blat.proc3829871.chain_2219,blat.proc3829871.chain_2220	2
scaffold_21	alternate_exon	5776477	5779864	-	asmbl_27718,asmbl_27720,asmbl_27723	none	STRG.24099.1,STRG.24099.3,blat.proc3829899.chain_1196,blat.proc3829899.chain_1200	4	blat.proc3829899.chain_1197,blat.proc3829899.chain_1202	2
scaffold_11	alt_acceptor	1572025	1572026	+	asmbl_5293	none	blat.proc3829893.chain_1798	1	blat.proc3829893.chain_1799	1
scaffold_4	alt_acceptor	14982182	14982183	+	asmbl_43252	none	STRG.5108.1,blat.proc3829873.chain_1439	2	STRG.5108.2	1
scaffold_20	retained_intron	5845709	5845968	-	asmbl_26697	none	STRG.23171.2,Trinity_GG_29935_c0_g1_i3,blat.proc3829899.chain_194,blat.proc3829899.chain_195	4	STRG.23171.1,blat.proc3829899.chain_193	2
scaffold_11	spliced_intron	14532977	14533569	+	asmbl_6067,asmbl_6071	none	STRG.14239.1,Trinity_GG_7860_c0_g1_i2,blat.proc3829877.chain_2743,blat.proc3829877.chain_2747	4	STRG.14239.2,STRG.14239.4,Trinity_GG_7860_c0_g1_i7,blat.proc3829877.chain_2744,blat.proc3829877.chain_2746,blat.proc3829877.chain_2748	6
scaffold_15	alt_donor	4520364	4520365	-	asmbl_15154	none	STRG.18169.2	1	STRG.18169.1	1
scaffold_17	starts_in_intron	8872640	8872640	-	asmbl_19177,asmbl_19178	none	STRG.20494.2,STRG.20494.3,blat.proc3829897.chain_1447	3	STRG.20494.1,blat.proc3829897.chain_1446	2
scaffold_13	alt_acceptor	7443188	7443189	+	asmbl_11034	none	STRG.16025.1	1	STRG.16025.2,blat.proc3829879.chain_783,blat.proc3829879.chain_784	3
scaffold_2	retained_intron	16413485	16413596	-	asmbl_23703	none	blat.proc3829887.chain_2409	1	STRG.2585.1,STRG.2585.2,blat.proc3829887.chain_2410,blat.proc3829887.chain_2412,blat.proc3829887.chain_2413	5
scaffold_6	spliced_intron	7515546	7515851	-	asmbl_48437	none	blat.proc3829889.chain_3683	1	STRG.7647.3,STRG.7647.4,Trinity_GG_21346_c0_g1_i3,blat.proc3829889.chain_3682	4
scaffold_6	alternate_exon	17644974	17645169	-	asmbl_49130	none	STRG.8448.1	1	STRG.8448.3,Trinity_GG_21817_c0_g1_i1,blat.proc3829891.chain_745	3
scaffold_4	retained_intron	8989384	8989559	-	asmbl_41541	none	Trinity_GG_19623_c1_g1_i2,blat.proc3829889.chain_758	2	STRG.4717.5	1
scaffold_2	starts_in_intron	9190184	9190184	-	asmbl_23383	none	Trinity_GG_18242_c1_g1_i1,blat.proc3829887.chain_2105	2	STRG.2167.1,STRG.2167.2,Trinity_GG_18242_c0_g1_i1,Trinity_GG_18242_c0_g1_i12,Trinity_GG_18242_c0_g1_i2,Trinity_GG_18242_c0_g1_i3,Trinity_GG_18242_c0_g1_i4,Trinity_GG_18242_c0_g1_i7,blat.proc3829887.chain_2099,blat.proc3829887.chain_2100,blat.proc3829887.chain_2101,blat.proc3829887.chain_2102,blat.proc3829887.chain_2103,blat.proc3829887.chain_2104	14
scaffold_6	starts_in_intron	397130	397130	+	asmbl_46610	none	blat.proc3829873.chain_3189	1	STRG.7096.1,blat.proc3829873.chain_3188	2
scaffold_8	alt_donor	12917566	12917567	-	asmbl_53258,asmbl_53262	none	STRG.10471.4,STRG.10471.7,blat.proc3829891.chain_2572	3	STRG.10471.2,STRG.10471.3,STRG.10471.5,STRG.10471.6,blat.proc3829891.chain_2571,blat.proc3829891.chain_2573	6
scaffold_5	alt_acceptor	9086578	9086579	+	asmbl_44261,asmbl_44267,asmbl_44270	none	STRG.6237.2,STRG.6237.3,Trinity_GG_3425_c0_g1_i4,blat.proc3829873.chain_2425	4	STRG.6237.1,STRG.6237.4,STRG.6237.5,blat.proc3829873.chain_2418,blat.proc3829873.chain_2419,blat.proc3829873.chain_2421,blat.proc3829873.chain_2422,blat.proc3829873.chain_2423,blat.proc3829873.chain_2424,blat.proc3829873.chain_2426	10
scaffold_3	starts_in_intron	7217303	7217303	-	asmbl_38906,asmbl_38908	none	STRG.3322.2,Trinity_GG_18809_c0_g3_i1,blat.proc3829887.chain_3086	3	STRG.3322.1,blat.proc3829887.chain_3084	2
scaffold_4	retained_intron	19503268	19503343	-	asmbl_42193	none	Trinity_GG_20092_c1_g1_i2,blat.proc3829889.chain_1557	2	blat.proc3829889.chain_1559	1
scaffold_1	spliced_intron	17975385	17975557	-	asmbl_1072	none	STRG.1262.2	1	STRG.1262.1,Trinity_GG_17692_c0_g1_i1	2
scaffold_27	spliced_intron	157697	157951	-	asmbl_36602	none	STRG.28533.1,blat.proc3829901.chain_1699	2	STRG.28533.2,STRG.28533.3,Trinity_GG_32959_c0_g1_i3,blat.proc3829901.chain_1698	4
scaffold_19	retained_intron	6213363	6213529	+	asmbl_22201	none	STRG.22141.4,Trinity_GG_12238_c0_g1_i3,blat.proc3829881.chain_3087	3	STRG.22141.2,STRG.22141.3,blat.proc3829881.chain_3088,blat.proc3829881.chain_3089	4
scaffold_2	alternate_exon	13399012	13399359	+	asmbl_24879	none	STRG.2357.3	1	STRG.2357.2,blat.proc3829871.chain_2405,blat.proc3829871.chain_2407	3
scaffold_16	starts_in_intron	2347739	2347739	+	asmbl_16916	none	Trinity_GG_10489_c0_g1_i1,blat.proc3829879.chain_3742	2	STRG.19117.1,blat.proc3829879.chain_3743	2
scaffold_1	starts_in_intron	12177689	12177689	+	asmbl_2176	none	blat.proc3829871.chain_924	1	STRG.846.1,STRG.846.2,STRG.846.3,STRG.846.4,blat.proc3829871.chain_923,blat.proc3829871.chain_925,blat.proc3829871.chain_926,blat.proc3829871.chain_927	8
scaffold_10	alt_donor	3928826	3928827	-	asmbl_3154,asmbl_3160	none	STRG.12230.3,STRG.12230.5,blat.proc3829893.chain_691	3	STRG.12230.4,blat.proc3829893.chain_695	2
scaffold_15	ends_in_intron	9731929	9731929	-	asmbl_15426	none	blat.proc3829895.chain_3132	1	STRG.18480.1,STRG.18480.2,Trinity_GG_27344_c0_g1_i5,blat.proc3829895.chain_3131	4
scaffold_24	ends_in_intron	5941098	5941098	+	asmbl_32266	none	blat.proc3829883.chain_3536	1	STRG.26645.1,blat.proc3829883.chain_3535,blat.proc3829883.chain_3537,blat.proc3829883.chain_3539,blat.proc3829883.chain_3542,blat.proc3829883.chain_3543,blat.proc3829883.chain_3544,blat.proc3829883.chain_3545,blat.proc3829883.chain_3547,blat.proc3829883.chain_3548,blat.proc3829883.chain_3549	11
scaffold_27	starts_in_intron	4139893	4139893	+	asmbl_36219	none	Trinity_GG_15971_c0_g1_i5,blat.proc3829885.chain_1943	2	STRG.28854.1	1
scaffold_19	spliced_intron	8219321	8219725	-	asmbl_21492	none	STRG.22259.1,blat.proc3829897.chain_2995	2	STRG.22259.2,blat.proc3829897.chain_2994	2
scaffold_6	spliced_intron	10546689	10547006	+	asmbl_47224	none	Trinity_GG_4325_c0_g1_i2,blat.proc3829875.chain_269	2	STRG.7884.1,blat.proc3829875.chain_268	2
scaffold_27	spliced_intron	2793632	2795233	+	asmbl_36071,asmbl_36072,asmbl_36073	none	STRG.28740.1,blat.proc3829885.chain_1813,blat.proc3829885.chain_1814	3	STRG.28740.2,Trinity_GG_15912_c1_g1_i2,blat.proc3829885.chain_1815	3
scaffold_2	ends_in_intron	7937294	7937294	+	asmbl_24638	none	Trinity_GG_1149_c1_g1_i1,blat.proc3829871.chain_2107	2	STRG.2090.1,Trinity_GG_1149_c0_g1_i1,Trinity_GG_1149_c0_g1_i4,Trinity_GG_1149_c0_g1_i5,blat.proc3829871.chain_2100,blat.proc3829871.chain_2101,blat.proc3829871.chain_2104	7
scaffold_8	retained_exon	11270088	11270564	-	asmbl_53139	none	STRG.10329.3	1	STRG.10329.2,blat.proc3829891.chain_2491	2
scaffold_2	retained_intron	13754726	13754863	-	asmbl_23540	none	blat.proc3829887.chain_2226	1	STRG.2371.1,blat.proc3829887.chain_2225,blat.proc3829887.chain_2227	3
scaffold_5	starts_in_intron	16585497	16585497	-	asmbl_46135	none	blat.proc3829889.chain_2887	1	STRG.6840.1,STRG.6840.2,blat.proc3829889.chain_2890	3
scaffold_9	starts_in_intron	17609580	17609580	-	asmbl_55628	none	blat.proc3829893.chain_184	1	STRG.11843.1,STRG.11843.2,blat.proc3829893.chain_182,blat.proc3829893.chain_183,blat.proc3829893.chain_185	5
scaffold_27	alt_donor	2814408	2814409	+	asmbl_36081	none	STRG.28742.4	1	STRG.28742.1,STRG.28742.2,STRG.28742.3,blat.proc3829885.chain_1799,blat.proc3829885.chain_1801,blat.proc3829885.chain_1802,blat.proc3829885.chain_1803	7
scaffold_21	spliced_intron	6129614	6129688	+	asmbl_28637,asmbl_28638	none	STRG.24136.1,Trinity_GG_13369_c0_g1_i2,blat.proc3829883.chain_1271,blat.proc3829883.chain_1273	4	STRG.24136.2,blat.proc3829883.chain_1272	2
scaffold_10	ends_in_intron	12897431	12897431	-	asmbl_3746	none	blat.proc3829893.chain_1341	1	STRG.12877.1,blat.proc3829893.chain_1336,blat.proc3829893.chain_1339,blat.proc3829893.chain_1340	4
scaffold_7	spliced_intron	2502043	2502163	-	asmbl_49566,asmbl_49567	none	STRG.8677.1,STRG.8677.2,blat.proc3829891.chain_1017	3	blat.proc3829891.chain_1016	1
scaffold_2	alt_donor	16424641	16424642	+	asmbl_25174	none	STRG.2578.2,blat.proc3829871.chain_2788	2	STRG.2578.1,blat.proc3829871.chain_2789	2
scaffold_8	alternate_exon	3049948	3050089	+	asmbl_51730	none	STRG.9810.1,blat.proc3829875.chain_2286	2	STRG.9810.2,Trinity_GG_5448_c0_g1_i1	2
scaffold_16	alternate_exon	14546402	14550753	-	asmbl_16642	none	STRG.19822.2,blat.proc3829897.chain_787	2	STRG.19822.4	1
scaffold_2	ends_in_intron	15227584	15227584	+	asmbl_25013	none	Trinity_GG_1401_c0_g1_i2	1	Trinity_GG_1401_c0_g1_i1,blat.proc3829871.chain_2641	2
scaffold_21	alternate_exon	386395	386492	-	asmbl_27331	none	STRG.23716.2	1	STRG.23716.1,Trinity_GG_30220_c0_g1_i1,blat.proc3829899.chain_747	3
scaffold_7	retained_intron	12410566	12410770	+	asmbl_51135	none	blat.proc3829875.chain_1783	1	STRG.9332.1,blat.proc3829875.chain_1782	2
scaffold_4	retained_exon	8990668	8990697	-	asmbl_41538	none	STRG.4717.4	1	STRG.4717.1,STRG.4717.3,blat.proc3829889.chain_759	3
scaffold_9	spliced_intron	11837471	11837624	-	asmbl_55287,asmbl_55288,asmbl_55289,asmbl_55291,asmbl_55292	none	STRG.11489.1,STRG.11489.2,STRG.11489.3,blat.proc3829891.chain_3601,blat.proc3829891.chain_3602,blat.proc3829891.chain_3603,blat.proc3829891.chain_3604,blat.proc3829891.chain_3605	8	blat.proc3829891.chain_3600	1
scaffold_22	retained_intron	9540632	9540817	-	asmbl_30310,asmbl_30312	none	STRG.25272.1,blat.proc3829899.chain_2386	2	blat.proc3829899.chain_2385	1
scaffold_3	alternate_exon	8168572	8169388	-	asmbl_38974	none	blat.proc3829887.chain_3134	1	blat.proc3829887.chain_3128	1
scaffold_3	spliced_intron	18937824	18937873	+	asmbl_40709	none	STRG.4063.2	1	blat.proc3829873.chain_426	1
scaffold_13	alt_donor	8116730	8116731	+	asmbl_11090	none	STRG.16080.2,Trinity_GG_8846_c0_g1_i3,blat.proc3829879.chain_831	3	STRG.16080.1,Trinity_GG_8846_c0_g1_i1,blat.proc3829879.chain_830	3
scaffold_1	skipped_exon	12466110	12468409	-	asmbl_726,asmbl_727,asmbl_728	none	STRG.864.1,STRG.864.2,STRG.864.4	3	STRG.864.3	1
scaffold_25	alt_acceptor	4818564	4818565	+	asmbl_33537	none	STRG.27398.1	1	STRG.27398.2,STRG.27398.3,Trinity_GG_15069_c0_g1_i1,Trinity_GG_15069_c0_g1_i2,blat.proc3829885.chain_359,blat.proc3829885.chain_360	6
scaffold_1517	alt_donor	1491	1492	-	asmbl_15968	none	STRG.30587.1	1	STRG.30587.2	1
scaffold_1	spliced_intron	5207312	5207851	+	asmbl_1710	none	blat.proc3829871.chain_391	1	blat.proc3829871.chain_393,blat.proc3829871.chain_395	2
scaffold_1325	spliced_intron	2091	2231	+	asmbl_11685,asmbl_11686,asmbl_11687	none	STRG.30565.1,STRG.30565.3,STRG.30565.4	3	STRG.30565.2,Trinity_GG_16889_c0_g1_i2,blat.proc3829885.chain_3503	3
scaffold_2	retained_exon	12351946	12352010	+	asmbl_24822	none	STRG.2292.1	1	STRG.2292.2,blat.proc3829871.chain_2393	2
scaffold_21	starts_in_intron	5143797	5143797	-	asmbl_27640	none	blat.proc3829899.chain_1187	1	blat.proc3829899.chain_1186	1
scaffold_3	alt_donor	7714416	7714417	-	asmbl_38927,asmbl_38932	none	STRG.3361.1,blat.proc3829887.chain_3174,blat.proc3829887.chain_3177	3	blat.proc3829887.chain_3170	1
scaffold_6	retained_intron	13178612	13178919	-	asmbl_48831	none	STRG.8070.2,Trinity_GG_21601_c0_g1_i2,blat.proc3829891.chain_371	3	STRG.8070.1,Trinity_GG_21601_c0_g2_i1,blat.proc3829891.chain_372,blat.proc3829891.chain_373	4
scaffold_2228	alt_acceptor	541	542	+	asmbl_30562	none	STRG.30701.1	1	STRG.30701.2	1
scaffold_2	retained_exon	9862236	9862331	-	asmbl_23411	none	STRG.2190.3	1	STRG.2190.2	1
scaffold_12	skipped_exon	13030042	13031510	-	asmbl_8034	none	blat.proc3829893.chain_3570	1	STRG.15173.1,STRG.15173.2	2
scaffold_15	spliced_intron	5453993	5454323	-	asmbl_15217,asmbl_15218,asmbl_15222,asmbl_15224,asmbl_15225	none	STRG.18219.1,STRG.18219.2,STRG.18219.3,blat.proc3829895.chain_2952,blat.proc3829895.chain_2953,blat.proc3829895.chain_2956	6	Trinity_GG_27252_c0_g1_i1,blat.proc3829895.chain_2955,blat.proc3829895.chain_2958	3
scaffold_5	alt_donor	10983590	10983591	+	asmbl_44391	none	STRG.6368.2	1	STRG.6368.1	1
scaffold_14	alt_donor	3588223	3588224	+	asmbl_11926,asmbl_11927,asmbl_11929	none	STRG.16927.2,STRG.16927.3,STRG.16927.4,blat.proc3829879.chain_1657	4	STRG.16927.1,blat.proc3829879.chain_1656,blat.proc3829879.chain_1658	3
scaffold_2	ends_in_intron	16854279	16854279	+	asmbl_25183	none	Trinity_GG_1491_c0_g1_i5,blat.proc3829871.chain_2830	2	STRG.2599.1,STRG.2599.2,STRG.2599.3,blat.proc3829871.chain_2827,blat.proc3829871.chain_2828,blat.proc3829871.chain_2829,blat.proc3829871.chain_2831	7
scaffold_23	spliced_intron	2610389	2611916	-	asmbl_31469,asmbl_31470,asmbl_31471,asmbl_31473	none	STRG.25709.1,STRG.25709.2,STRG.25709.3,blat.proc3829899.chain_2843,blat.proc3829899.chain_2844,blat.proc3829899.chain_2846	6	blat.proc3829899.chain_2842	1
scaffold_13	ends_in_intron	12243219	12243219	-	asmbl_10092	none	Trinity_GG_26173_c0_g1_i5,blat.proc3829895.chain_1098	2	STRG.16344.1,STRG.16344.2,STRG.16344.3,blat.proc3829895.chain_1094,blat.proc3829895.chain_1095,blat.proc3829895.chain_1097	6
scaffold_8	retained_exon	3490500	3490549	+	asmbl_51759,asmbl_51760,asmbl_51761	none	STRG.9839.2,STRG.9839.3,blat.proc3829875.chain_2330	3	STRG.9839.1,blat.proc3829875.chain_2331	2
scaffold_27	starts_in_intron	2767541	2767541	-	asmbl_36804	none	blat.proc3829901.chain_1925	1	STRG.28738.1,blat.proc3829901.chain_1926,blat.proc3829901.chain_1927	3
scaffold_21	alt_acceptor	755709	755710	+	asmbl_28324	none	STRG.23758.1,Trinity_GG_13120_c0_g1_i2,blat.proc3829883.chain_837,blat.proc3829883.chain_838	4	STRG.23758.2	1
scaffold_25	ends_in_intron	8424310	8424310	+	asmbl_33727	none	blat.proc3829885.chain_673	1	STRG.27657.1,blat.proc3829885.chain_672	2
scaffold_23	retained_intron	5182962	5183052	-	asmbl_31615	none	STRG.25878.1,blat.proc3829899.chain_2993	2	STRG.25878.2	1
scaffold_13	starts_in_intron	2872352	2872352	-	asmbl_9445	none	blat.proc3829895.chain_346	1	STRG.15576.1,blat.proc3829895.chain_344,blat.proc3829895.chain_345,blat.proc3829895.chain_347	4
scaffold_13	retained_intron	5841697	5842514	-	asmbl_9696,asmbl_9697	none	blat.proc3829895.chain_571,blat.proc3829895.chain_572	2	STRG.15879.1,blat.proc3829895.chain_573	2
scaffold_13	spliced_intron	9553953	9554101	+	asmbl_11195	none	Trinity_GG_8886_c0_g1_i2,blat.proc3829879.chain_912	2	STRG.16207.1,Trinity_GG_8886_c0_g1_i1,blat.proc3829879.chain_913	3
scaffold_18	alt_donor	281385	281386	+	asmbl_20313,asmbl_20314	none	STRG.20973.1,STRG.20973.4,blat.proc3829881.chain_1822,blat.proc3829881.chain_1823	4	STRG.20973.3,Trinity_GG_11537_c1_g1_i1,blat.proc3829881.chain_1824	3
scaffold_13	spliced_intron	2270688	2270802	-	asmbl_9400,asmbl_9401,asmbl_9402,asmbl_9403	none	STRG.15533.1,STRG.15533.2,STRG.15533.3,blat.proc3829895.chain_308,blat.proc3829895.chain_311	5	blat.proc3829895.chain_310,blat.proc3829895.chain_317	2
scaffold_6	skipped_exon	9150989	9151553	-	asmbl_48540,asmbl_48543	none	STRG.7783.1,STRG.7783.2,blat.proc3829891.chain_44	3	STRG.7783.3,blat.proc3829891.chain_45	2
scaffold_13	retained_intron	7216203	7216365	+	asmbl_11006,asmbl_11008,asmbl_11010	none	STRG.16002.2,blat.proc3829879.chain_695,blat.proc3829879.chain_698	3	STRG.16002.1,blat.proc3829879.chain_696,blat.proc3829879.chain_699,blat.proc3829879.chain_700,blat.proc3829879.chain_701	5
scaffold_1	alt_acceptor	5748750	5748751	+	asmbl_1775,asmbl_1776	none	STRG.373.1,STRG.373.2,blat.proc3829871.chain_435	3	STRG.373.3,blat.proc3829871.chain_437	2
scaffold_21	alternate_exon	6486249	6487279	+	asmbl_28670,asmbl_28671	none	STRG.24157.1,STRG.24157.2,blat.proc3829883.chain_1311	3	STRG.24157.3	1
scaffold_13	retained_exon	4458512	4458560	+	asmbl_10774,asmbl_10775	none	STRG.15755.1,Trinity_GG_8663_c0_g1_i6,blat.proc3829879.chain_451,blat.proc3829879.chain_452	4	STRG.15755.3,STRG.15755.4,Trinity_GG_8663_c0_g1_i7,blat.proc3829879.chain_448,blat.proc3829879.chain_449,blat.proc3829879.chain_453	6
scaffold_11	starts_in_intron	171586	171586	+	asmbl_5222	none	blat.proc3829877.chain_1757	1	STRG.13231.1,STRG.13231.2,STRG.13231.3,STRG.13231.4,STRG.13231.5	5
scaffold_3	starts_in_intron	5008722	5008722	+	asmbl_40016	none	Trinity_GG_1799_c0_g2_i7,blat.proc3829871.chain_3364	2	STRG.3199.1,STRG.3199.2,STRG.3199.4,blat.proc3829871.chain_3366,blat.proc3829871.chain_3368	5
scaffold_14	retained_intron	13899362	13899516	+	asmbl_12499,asmbl_12500	none	STRG.17653.4,STRG.17653.5	2	STRG.17653.2	1
scaffold_8	spliced_intron	3433549	3433602	+	asmbl_51752	none	STRG.9833.2	1	STRG.9833.1,Trinity_GG_5467_c0_g1_i2,blat.proc3829875.chain_2311,blat.proc3829875.chain_2312	4
scaffold_15	alt_acceptor	2196875	2196876	+	asmbl_13991	none	STRG.17990.1	1	STRG.17990.2	1
scaffold_1	spliced_intron	1042580	1042741	+	asmbl_1450	none	STRG.62.4	1	STRG.62.1,Trinity_GG_5_c0_g1_i4,Trinity_GG_5_c0_g1_i6,blat.proc3829871.chain_9	4
scaffold_25	alternate_exon	666477	666516	+	asmbl_33341	none	STRG.27104.2	1	STRG.27104.1	1
scaffold_14	alt_donor	6277343	6277344	-	asmbl_13094,asmbl_13095	none	STRG.17065.1,STRG.17065.2,blat.proc3829895.chain_1814,blat.proc3829895.chain_1817	4	STRG.17065.3,STRG.17065.4,blat.proc3829895.chain_1815,blat.proc3829895.chain_1816	4
scaffold_3	starts_in_intron	10566750	10566750	+	asmbl_40229	none	blat.proc3829871.chain_3650	1	STRG.3489.1,blat.proc3829871.chain_3651	2
scaffold_5	spliced_intron	5843212	5843431	-	asmbl_45448	none	Trinity_GG_20386_c1_g1_i1	1	Trinity_GG_20386_c1_g1_i2	1
scaffold_23	alt_donor	6912279	6912280	-	asmbl_31712	none	STRG.25998.3	1	STRG.25998.1,STRG.25998.2,blat.proc3829899.chain_3043,blat.proc3829899.chain_3044	4
scaffold_11	starts_in_intron	17180796	17180796	+	asmbl_6182	none	Trinity_GG_7888_c1_g1_i1,blat.proc3829877.chain_2797	2	STRG.14368.1,Trinity_GG_7888_c1_g2_i2,blat.proc3829877.chain_2798	3
scaffold_2	spliced_intron	13403024	13403216	+	asmbl_24883	none	STRG.2362.2,Trinity_GG_1332_c2_g1_i3,blat.proc3829871.chain_2478	3	STRG.2362.1,Trinity_GG_1332_c2_g1_i1,blat.proc3829871.chain_2477	3
scaffold_21	alternate_exon	7498620	7499759	-	asmbl_27845	none	STRG.24266.1,blat.proc3829899.chain_1286	2	STRG.24266.2	1
scaffold_27	alternate_exon	974643	975035	+	asmbl_35933	none	Trinity_GG_15816_c0_g1_i1,blat.proc3829885.chain_1621	2	Trinity_GG_15816_c0_g1_i2,blat.proc3829885.chain_1619	2
scaffold_10	starts_in_intron	926545	926545	-	asmbl_2926	none	Trinity_GG_23671_c0_g1_i2,blat.proc3829893.chain_421	2	STRG.11959.1,Trinity_GG_23671_c0_g1_i3,blat.proc3829893.chain_420	3
scaffold_11	starts_in_intron	8099212	8099212	+	asmbl_5690,asmbl_5691,asmbl_5692	none	STRG.13810.4,Trinity_GG_7614_c0_g1_i2,Trinity_GG_7614_c0_g1_i5,blat.proc3829877.chain_2292,blat.proc3829877.chain_2297	5	STRG.13810.1,STRG.13810.2,STRG.13810.3,Trinity_GG_7614_c0_g1_i1,Trinity_GG_7614_c0_g1_i3,Trinity_GG_7614_c0_g1_i4,Trinity_GG_7614_c0_g1_i6,blat.proc3829877.chain_2293,blat.proc3829877.chain_2294,blat.proc3829877.chain_2295,blat.proc3829877.chain_2296	11
scaffold_21	starts_in_intron	5518118	5518118	-	asmbl_27688	none	blat.proc3829899.chain_1158	1	STRG.24069.1,blat.proc3829899.chain_1154,blat.proc3829899.chain_1156,blat.proc3829899.chain_1157	4
scaffold_12	alt_acceptor	10050834	10050835	-	asmbl_7852	none	STRG.14968.1	1	STRG.14968.2,blat.proc3829893.chain_3363	2
scaffold_26	starts_in_intron	4437845	4437845	+	asmbl_35427	none	blat.proc3829885.chain_1122	1	STRG.28141.1,blat.proc3829885.chain_1121	2
scaffold_23	alt_acceptor	2415138	2415139	+	asmbl_30704	none	STRG.25693.1,Trinity_GG_14189_c0_g1_i1,blat.proc3829883.chain_2608	3	STRG.25693.2,STRG.25693.3	2
scaffold_6	alternate_exon	3535906	3536167	-	asmbl_48212	none	blat.proc3829889.chain_3370	1	blat.proc3829889.chain_3371	1
scaffold_21	alt_acceptor	7445925	7445926	+	asmbl_28754	none	STRG.24258.2	1	STRG.24258.1,blat.proc3829883.chain_1411	2
scaffold_2	skipped_exon	13445747	13448231	-	asmbl_23533	none	blat.proc3829887.chain_2217	1	STRG.2365.1,blat.proc3829887.chain_2214,blat.proc3829887.chain_2216	3
scaffold_1	ends_in_intron	1257930	1257930	-	asmbl_58	none	STRG.75.3,blat.proc3829885.chain_3672	2	STRG.75.1,blat.proc3829885.chain_3671	2
scaffold_28	spliced_intron	4255504	4255598	-	asmbl_37524	none	STRG.29599.1,blat.proc3829901.chain_2716	2	blat.proc3829901.chain_2715	1
scaffold_6	retained_intron	13229094	13229383	+	asmbl_47439,asmbl_47442,asmbl_47443,asmbl_47444,asmbl_47448	none	STRG.8077.2,STRG.8077.3,STRG.8077.7,blat.proc3829875.chain_500,blat.proc3829875.chain_501,blat.proc3829875.chain_503,blat.proc3829875.chain_506	7	STRG.8077.5,STRG.8077.6,blat.proc3829875.chain_505	3
scaffold_9	alt_donor	16658365	16658366	-	asmbl_55563	none	STRG.11803.4,blat.proc3829893.chain_211	2	STRG.11803.1,STRG.11803.2,STRG.11803.3,blat.proc3829893.chain_209,blat.proc3829893.chain_213	5
scaffold_15	spliced_intron	12742577	12743313	+	asmbl_14540,asmbl_14543,asmbl_14545	none	STRG.18731.1,STRG.18731.4,blat.proc3829879.chain_3350,blat.proc3829879.chain_3352	4	STRG.18731.5,blat.proc3829879.chain_3351	2
scaffold_4	starts_in_intron	6488656	6488656	-	asmbl_41420	none	Trinity_GG_19554_c0_g1_i3,blat.proc3829889.chain_652	2	STRG.4509.1,blat.proc3829889.chain_653	2
scaffold_18	alt_acceptor	7947576	7947577	-	asmbl_20026,asmbl_20027,asmbl_20028	none	STRG.21484.1,STRG.21484.2,STRG.21484.3,blat.proc3829897.chain_2317,blat.proc3829897.chain_2318,blat.proc3829897.chain_2319	6	STRG.21484.4	1
scaffold_25	ends_in_intron	2091804	2091804	-	asmbl_34048	none	STRG.27196.3	1	STRG.27196.1	1
scaffold_8	spliced_intron	12626109	12626425	-	asmbl_53213,asmbl_53214	none	STRG.10429.1,blat.proc3829891.chain_2557,blat.proc3829891.chain_2558	3	blat.proc3829891.chain_2559,blat.proc3829891.chain_2560	2
scaffold_20	retained_intron	4478711	4479160	-	asmbl_26661,asmbl_26662	none	blat.proc3829899.chain_55,blat.proc3829899.chain_58	2	STRG.23113.1,STRG.23113.2,STRG.23113.3,blat.proc3829899.chain_56,blat.proc3829899.chain_59	5
scaffold_8	alt_donor	11675642	11675643	-	asmbl_53150	none	STRG.10357.2	1	STRG.10357.1	1
scaffold_3	alt_acceptor	19814268	19814269	+	asmbl_40729,asmbl_40731,asmbl_40734,asmbl_40736	none	STRG.4094.1,STRG.4094.3,blat.proc3829873.chain_434,blat.proc3829873.chain_437,blat.proc3829873.chain_438	5	STRG.4094.2,blat.proc3829873.chain_433,blat.proc3829873.chain_435,blat.proc3829873.chain_436	4
scaffold_21	spliced_intron	5169771	5169934	-	asmbl_27646,asmbl_27650,asmbl_27651	none	STRG.24038.1,blat.proc3829899.chain_1129,blat.proc3829899.chain_1132,blat.proc3829899.chain_1134	4	blat.proc3829899.chain_1128	1
scaffold_8	alternate_exon	9292669	9293142	+	asmbl_52054	none	STRG.10181.2,blat.proc3829875.chain_2681	2	STRG.10181.1,blat.proc3829875.chain_2680	2
scaffold_10	spliced_intron	975363	975513	-	asmbl_2937,asmbl_2939	none	STRG.11970.1,Trinity_GG_23642_c0_g1_i1,Trinity_GG_23642_c0_g1_i2	3	Trinity_GG_23642_c0_g1_i5,blat.proc3829893.chain_361	2
scaffold_20	spliced_intron	2631420	2631530	-	asmbl_26580	none	STRG.22995.3	1	Trinity_GG_29846_c2_g1_i3,blat.proc3829899.chain_21	2
scaffold_18	spliced_intron	1886374	1887983	-	asmbl_19689,asmbl_19697,asmbl_19699,asmbl_19701,asmbl_19702	none	STRG.21072.2,STRG.21072.3,STRG.21072.4,STRG.21072.6,blat.proc3829897.chain_1893	5	STRG.21072.5,Trinity_GG_28789_c1_g1_i1,blat.proc3829897.chain_1905	3
scaffold_17	spliced_intron	14627703	14627832	-	asmbl_19486,asmbl_19488	none	STRG.20920.3,blat.proc3829897.chain_1816	2	STRG.20920.2,blat.proc3829897.chain_1812	2
scaffold_9	alt_donor	376900	376901	+	asmbl_53741	none	Trinity_GG_5971_c0_g1_i1	1	STRG.10766.1	1
scaffold_3	retained_intron	10937871	10938064	+	asmbl_40274	none	STRG.3535.1,blat.proc3829871.chain_3702	2	STRG.3535.2,blat.proc3829871.chain_3701	2
scaffold_8	ends_in_intron	9881965	9881965	+	asmbl_52117	none	blat.proc3829875.chain_2740	1	STRG.10228.1,STRG.10228.2,blat.proc3829875.chain_2738,blat.proc3829875.chain_2739	4
scaffold_12	ends_in_intron	4301871	4301871	+	asmbl_8558	none	blat.proc3829877.chain_3113	1	STRG.14595.1,blat.proc3829877.chain_3114	2
scaffold_24	alt_acceptor	10379598	10379599	-	asmbl_33179	none	STRG.26979.2	1	STRG.26979.1	1
scaffold_9	alt_donor	376861	376862	+	asmbl_53740	none	STRG.10766.1	1	Trinity_GG_5971_c0_g1_i1	1
scaffold_18	spliced_intron	6859375	6859476	+	asmbl_20717	none	STRG.21382.2,blat.proc3829881.chain_2341	2	STRG.21382.1,blat.proc3829881.chain_2342	2
scaffold_25	spliced_intron	8475238	8475447	+	asmbl_33731,asmbl_33734	none	STRG.27664.1,blat.proc3829885.chain_661,blat.proc3829885.chain_662	3	Trinity_GG_15254_c0_g1_i3,blat.proc3829885.chain_663	2
scaffold_1	spliced_intron	8733924	8734054	-	asmbl_488,asmbl_489,asmbl_491	none	STRG.574.1,blat.proc3829887.chain_481,blat.proc3829887.chain_483,blat.proc3829887.chain_484	4	blat.proc3829887.chain_482	1
scaffold_2	retained_intron	7324810	7325889	+	asmbl_24596	none	STRG.2062.1,Trinity_GG_1176_c0_g1_i2,blat.proc3829871.chain_2162	3	STRG.2062.3,Trinity_GG_1176_c0_g1_i1,blat.proc3829871.chain_2160	3
scaffold_19	alternate_exon	3207470	3207629	+	asmbl_22110	none	STRG.22001.2,blat.proc3829881.chain_2953	2	STRG.22001.1,blat.proc3829881.chain_2954	2
scaffold_19	spliced_intron	6669350	6669595	+	asmbl_22230	none	STRG.22169.4	1	STRG.22169.1,STRG.22169.2,blat.proc3829881.chain_3026	3
scaffold_9	alternate_exon	10902562	10902597	+	asmbl_54291	none	blat.proc3829877.chain_173	1	STRG.11390.1	1
scaffold_300	retained_intron	2945	3159	+	asmbl_40853	none	blat.proc3829885.chain_3282	1	STRG.30247.1,STRG.30247.2,STRG.30247.3,blat.proc3829885.chain_3278,blat.proc3829885.chain_3279,blat.proc3829885.chain_3281	6
scaffold_11	starts_in_intron	5669796	5669796	+	asmbl_5543	none	Trinity_GG_7513_c0_g1_i2,blat.proc3829877.chain_2133	2	STRG.13629.1,blat.proc3829877.chain_2132	2
scaffold_28	retained_intron	535489	536046	-	asmbl_37229	none	STRG.29257.1,Trinity_GG_33347_c2_g1_i1,Trinity_GG_33347_c3_g1_i2,blat.proc3829901.chain_2298,blat.proc3829901.chain_2300	5	STRG.29257.2,blat.proc3829901.chain_2299	2
scaffold_14	starts_in_intron	9930512	9930512	-	asmbl_13376	none	STRG.17347.2	1	STRG.17347.1,blat.proc3829895.chain_2075	2
scaffold_12	alt_acceptor	8325304	8325305	+	asmbl_8782	none	STRG.14852.2	1	STRG.14852.1,blat.proc3829877.chain_3391	2
scaffold_27	retained_intron	3093328	3093432	-	asmbl_36839,asmbl_36840,asmbl_36843	none	STRG.28775.1,STRG.28775.4,Trinity_GG_33109_c0_g1_i6,blat.proc3829901.chain_1946,blat.proc3829901.chain_1947,blat.proc3829901.chain_1952	6	STRG.28775.5	1
scaffold_14	spliced_intron	11386935	11387002	-	asmbl_13461	none	STRG.17457.3,blat.proc3829895.chain_2095	2	blat.proc3829895.chain_2094	1
scaffold_1	starts_in_intron	20729332	20729332	-	asmbl_1193	none	blat.proc3829887.chain_1292	1	STRG.1415.1	1
scaffold_13	alternate_exon	8355742	8355997	+	asmbl_11112	none	Trinity_GG_8876_c0_g1_i5,blat.proc3829879.chain_889	2	STRG.16112.4	1
scaffold_11	spliced_intron	13257061	13257404	+	asmbl_6017,asmbl_6018,asmbl_6020,asmbl_6021	none	STRG.14184.1,STRG.14184.2,STRG.14184.3,blat.proc3829877.chain_2651,blat.proc3829877.chain_2653,blat.proc3829877.chain_2654	6	Trinity_GG_7818_c0_g1_i4,blat.proc3829877.chain_2652	2
scaffold_13	alt_donor	6396106	6396107	+	asmbl_10909,asmbl_10916	none	STRG.15914.1,STRG.15914.5,Trinity_GG_8718_c0_g1_i1,blat.proc3829879.chain_557	4	STRG.15914.2,Trinity_GG_8718_c0_g1_i4,Trinity_GG_8718_c0_g1_i6,blat.proc3829879.chain_550,blat.proc3829879.chain_553	5
scaffold_16	alt_acceptor	3995824	3995825	+	asmbl_16952	none	STRG.19196.2	1	STRG.19196.1,STRG.19196.3,blat.proc3829881.chain_41,blat.proc3829881.chain_42	4
scaffold_28	alternate_exon	2316961	2317001	+	asmbl_38054,asmbl_38055	none	STRG.29386.1,blat.proc3829885.chain_2512,blat.proc3829885.chain_2513	3	STRG.29386.2	1
scaffold_5	alt_donor	5591216	5591217	+	asmbl_44014	none	STRG.5973.1,blat.proc3829873.chain_2061	2	STRG.5973.2,blat.proc3829873.chain_2060	2
scaffold_19	alt_donor	7426107	7426108	+	asmbl_22258	none	STRG.22209.1,blat.proc3829881.chain_3127	2	STRG.22209.2,Trinity_GG_12263_c0_g1_i2,blat.proc3829881.chain_3126	3
scaffold_4	ends_in_intron	307114	307114	-	asmbl_41071	none	Trinity_GG_19280_c0_g2_i2,blat.proc3829889.chain_174	2	STRG.4128.1,STRG.4128.3,Trinity_GG_19280_c0_g2_i1,Trinity_GG_19280_c0_g2_i3,blat.proc3829889.chain_175,blat.proc3829889.chain_176	6
scaffold_13	retained_exon	15636036	15636176	+	asmbl_11502	none	STRG.16594.3	1	STRG.16594.2	1
scaffold_3	alternate_exon	17359128	17359247	-	asmbl_39492	none	STRG.3964.2	1	STRG.3964.1,blat.proc3829887.chain_3706	2
scaffold_19	retained_exon	8761200	8761238	-	asmbl_21517	none	STRG.22317.2,blat.proc3829897.chain_3049	2	STRG.22317.1,blat.proc3829897.chain_3048	2
scaffold_1	retained_intron	20338943	20340702	+	asmbl_2602,asmbl_2604,asmbl_2605,asmbl_2608,asmbl_2615	none	STRG.1398.2,STRG.1398.3,STRG.1398.6,Trinity_GG_815_c2_g1_i8,blat.proc3829871.chain_1445,blat.proc3829871.chain_1446,blat.proc3829871.chain_1450	7	STRG.1398.4,STRG.1398.5,blat.proc3829871.chain_1449,blat.proc3829871.chain_1452	4
scaffold_643	retained_intron	1606	1628	-	asmbl_49430	none	blat.proc3829901.chain_3439	1	STRG.30389.2	1
scaffold_7	starts_in_intron	286069	286069	+	asmbl_50432	none	Trinity_GG_4731_c0_g1_i6	1	STRG.8593.1,STRG.8593.2,Trinity_GG_4731_c0_g1_i3	3
scaffold_23	alt_acceptor	3025105	3025106	-	asmbl_31502	none	STRG.25728.2	1	STRG.25728.1,blat.proc3829899.chain_2854	2
scaffold_5	starts_in_intron	6324089	6324089	-	asmbl_45478	none	blat.proc3829889.chain_2053,blat.proc3829889.chain_2054	2	STRG.6037.2	1
scaffold_18	alternate_exon	8726426	8726700	+	asmbl_20887	none	blat.proc3829881.chain_2482	1	STRG.21533.4	1
scaffold_1	starts_in_intron	12776905	12776905	+	asmbl_2239	none	Trinity_GG_561_c0_g1_i2,blat.proc3829871.chain_997	2	STRG.895.1,blat.proc3829871.chain_998,blat.proc3829871.chain_999	3
scaffold_28	starts_in_intron	3178674	3178674	-	asmbl_37464	none	STRG.29508.1,blat.proc3829901.chain_2615	2	STRG.29508.2,Trinity_GG_33546_c0_g1_i2,blat.proc3829901.chain_2614	3
scaffold_11	alt_donor	8426300	8426301	+	asmbl_5732,asmbl_5740	none	STRG.13849.1,STRG.13849.2	2	Trinity_GG_7631_c0_g1_i2,Trinity_GG_7631_c0_g1_i3,blat.proc3829877.chain_2325,blat.proc3829877.chain_2327	4
scaffold_6	ends_in_intron	10898349	10898349	+	asmbl_47243	none	Trinity_GG_4335_c0_g1_i4,blat.proc3829875.chain_291	2	STRG.7901.1,STRG.7901.2,Trinity_GG_4335_c0_g1_i1,blat.proc3829875.chain_288,blat.proc3829875.chain_290,blat.proc3829875.chain_292	6
scaffold_23	alt_donor	4226784	4226785	-	asmbl_31569,asmbl_31571,asmbl_31573	none	STRG.25818.1,STRG.25818.2,blat.proc3829899.chain_2943,blat.proc3829899.chain_2949	4	STRG.25818.3,STRG.25818.5,blat.proc3829899.chain_2944,blat.proc3829899.chain_2945	4
scaffold_21	retained_intron	11103380	11103507	-	asmbl_28116	none	STRG.24563.1,Trinity_GG_30758_c0_g1_i2,blat.proc3829899.chain_1714,blat.proc3829899.chain_1715	4	STRG.24563.2	1
scaffold_27	spliced_intron	6782129	6782627	-	asmbl_37038	none	STRG.29027.1,blat.proc3829901.chain_2191	2	Trinity_GG_33279_c0_g1_i1,blat.proc3829901.chain_2192	2
scaffold_1	alt_donor	14200941	14200942	+	asmbl_2326	none	STRG.1004.1,Trinity_GG_586_c0_g1_i1,blat.proc3829871.chain_1048	3	blat.proc3829871.chain_1049	1
scaffold_21	starts_in_intron	1694033	1694033	+	asmbl_28378	none	Trinity_GG_13173_c0_g1_i4,blat.proc3829883.chain_928	2	STRG.23812.1,blat.proc3829883.chain_926,blat.proc3829883.chain_927	3
scaffold_11	alt_acceptor	6591193	6591194	-	asmbl_6699,asmbl_6700	none	STRG.13693.1,blat.proc3829893.chain_2138,blat.proc3829893.chain_2139	3	STRG.13693.2	1
scaffold_15	ends_in_intron	9867800	9867800	+	asmbl_14368	none	blat.proc3829879.chain_3061	1	STRG.18515.1,blat.proc3829879.chain_3062	2
scaffold_16	alt_acceptor	8506963	8506964	-	asmbl_16424	none	Trinity_GG_27944_c0_g1_i2,blat.proc3829897.chain_504	2	STRG.19466.1	1
scaffold_17	retained_exon	9487955	9488033	+	asmbl_18218,asmbl_18219,asmbl_18222	none	STRG.20558.2,STRG.20558.3,blat.proc3829881.chain_1327,blat.proc3829881.chain_1329,blat.proc3829881.chain_1330	5	STRG.20558.1,blat.proc3829881.chain_1326,blat.proc3829881.chain_1331	3
scaffold_1	alt_acceptor	1555630	1555631	+	asmbl_1485	none	STRG.92.2	1	STRG.92.1	1
scaffold_3	starts_in_intron	3730094	3730094	+	asmbl_39925	none	Trinity_GG_1747_c1_g1_i1,blat.proc3829871.chain_3251	2	STRG.3095.1	1
scaffold_5	retained_exon	9811654	9811724	+	asmbl_44313,asmbl_44315	none	STRG.6289.2,STRG.6289.4,blat.proc3829873.chain_2412	3	STRG.6289.1,blat.proc3829873.chain_2411	2
scaffold_14	retained_exon	3551269	3551337	-	asmbl_13002,asmbl_13004	none	STRG.16931.1,STRG.16931.3,blat.proc3829895.chain_1641	3	STRG.16931.2,blat.proc3829895.chain_1640	2
scaffold_21	alternate_exon	7924275	7927136	+	asmbl_28786	none	STRG.24313.3,blat.proc3829883.chain_1451	2	STRG.24313.4,blat.proc3829883.chain_1452	2
scaffold_6	alt_acceptor	12992093	12992094	-	asmbl_48797	none	STRG.8061.4	1	STRG.8061.1,blat.proc3829891.chain_260,blat.proc3829891.chain_272	3
scaffold_16	alternate_exon	948232	948380	-	asmbl_16092	none	STRG.19059.1,Trinity_GG_27711_c0_g1_i2,blat.proc3829897.chain_101	3	Trinity_GG_27711_c0_g1_i1,blat.proc3829897.chain_102	2
scaffold_14	alt_acceptor	8335531	8335532	+	asmbl_12205	none	STRG.17242.2	1	STRG.17242.1,blat.proc3829879.chain_1980,blat.proc3829879.chain_1981	3
scaffold_1	alt_donor	6279700	6279701	-	asmbl_348,asmbl_349,asmbl_351,asmbl_352	none	STRG.425.1,STRG.425.2,STRG.425.4,STRG.425.5	4	STRG.425.3,Trinity_GG_17251_c1_g1_i1,blat.proc3829887.chain_336	3
scaffold_24	spliced_intron	6432023	6432478	-	asmbl_32948	none	STRG.26677.2	1	blat.proc3829899.chain_3723	1
scaffold_356	starts_in_intron	3549	3549	+	asmbl_40995	none	STRG.30273.2	1	STRG.30273.1	1
scaffold_20	alt_acceptor	2229989	2229990	-	asmbl_26564	none	STRG.22946.1,blat.proc3829897.chain_3725	2	STRG.22946.2,blat.proc3829897.chain_3724	2
scaffold_13	spliced_intron	7935012	7935165	-	asmbl_9873	none	Trinity_GG_26026_c0_g1_i5,blat.proc3829895.chain_802	2	STRG.16055.3,blat.proc3829895.chain_799,blat.proc3829895.chain_803	3
scaffold_16	spliced_intron	411662	411800	-	asmbl_16033,asmbl_16035	none	STRG.19020.1,blat.proc3829897.chain_76,blat.proc3829897.chain_78	3	blat.proc3829897.chain_77	1
scaffold_24	spliced_intron	7721535	7721612	-	asmbl_33039	none	STRG.26799.1,blat.proc3829901.chain_118	2	blat.proc3829901.chain_119	1
scaffold_17	alt_donor	7969535	7969536	-	asmbl_19106	none	STRG.20404.1,blat.proc3829897.chain_1396	2	STRG.20404.2,STRG.20404.3	2
scaffold_12	skipped_exon	12288119	12290941	-	asmbl_7990	none	STRG.15114.5	1	STRG.15114.3,STRG.15114.4	2
scaffold_3	starts_in_intron	11326642	11326642	-	asmbl_39105	none	Trinity_GG_18951_c0_g1_i1	1	STRG.3560.1,Trinity_GG_18951_c0_g1_i2,blat.proc3829887.chain_3328	3
scaffold_12	starts_in_intron	2770860	2770860	-	asmbl_7464	none	blat.proc3829893.chain_2797	1	STRG.14512.1,blat.proc3829893.chain_2796	2
scaffold_10	starts_in_intron	2483540	2483540	+	asmbl_4257	none	Trinity_GG_6718_c0_g1_i2,blat.proc3829877.chain_774	2	STRG.12062.1,Trinity_GG_6718_c0_g1_i1,blat.proc3829877.chain_776	3
scaffold_20	starts_in_intron	11682174	11682174	-	asmbl_27111	none	blat.proc3829899.chain_662	1	STRG.23663.1,STRG.23663.2,Trinity_GG_30185_c0_g2_i1,blat.proc3829899.chain_663	4
scaffold_9	starts_in_intron	3664940	3664940	+	asmbl_53890	none	STRG.10962.3	1	STRG.10962.2,blat.proc3829875.chain_3441	2
scaffold_2	retained_intron	20429623	20429784	-	asmbl_23922	none	blat.proc3829887.chain_2655	1	STRG.2882.1,blat.proc3829887.chain_2656	2
scaffold_20	starts_in_intron	11102396	11102396	+	asmbl_26167	none	Trinity_GG_13072_c1_g1_i1,blat.proc3829883.chain_759	2	STRG.23614.1	1
scaffold_17	retained_intron	2566428	2566630	+	asmbl_17793	none	Trinity_GG_10964_c0_g1_i5,blat.proc3829881.chain_841	2	blat.proc3829881.chain_839	1
scaffold_13	alternate_exon	9341673	9341850	+	asmbl_11184	none	STRG.16189.2	1	STRG.16189.1,Trinity_GG_8894_c0_g1_i1,blat.proc3829879.chain_921	3
scaffold_1	spliced_intron	5741078	5741175	+	asmbl_1764,asmbl_1769,asmbl_1770,asmbl_1771,asmbl_1772	none	STRG.382.2,blat.proc3829871.chain_369,blat.proc3829871.chain_370,blat.proc3829871.chain_371,blat.proc3829871.chain_373,blat.proc3829871.chain_375	6	Trinity_GG_223_c0_g1_i6,blat.proc3829871.chain_374	2
scaffold_13	alt_acceptor	8289226	8289227	+	asmbl_11101	none	STRG.16106.2	1	STRG.16106.1,blat.proc3829879.chain_856	2
scaffold_28	spliced_intron	2651234	2651332	+	asmbl_38091	none	STRG.29436.2	1	STRG.29436.1,Trinity_GG_16344_c2_g1_i4,Trinity_GG_16344_c2_g2_i1,Trinity_GG_16344_c2_g2_i3,blat.proc3829885.chain_2580	5
scaffold_9	alt_acceptor	4674816	4674817	+	asmbl_53934	none	STRG.11030.1,Trinity_GG_6103_c0_g1_i1,blat.proc3829875.chain_3445	3	STRG.11030.2,Trinity_GG_6103_c0_g1_i2,blat.proc3829875.chain_3444	3
scaffold_6	starts_in_intron	2938641	2938641	-	asmbl_48150	none	blat.proc3829889.chain_3290	1	STRG.7292.1,blat.proc3829889.chain_3289	2
scaffold_14	alt_donor	15928174	15928175	-	asmbl_13747	none	STRG.17822.3	1	STRG.17822.4	1
scaffold_24	alternate_exon	6776580	6776655	+	asmbl_32348	none	STRG.26705.2	1	STRG.26705.1,blat.proc3829883.chain_3618	2
scaffold_11	alt_donor	8903616	8903617	-	asmbl_6871	none	Trinity_GG_24769_c0_g1_i2,blat.proc3829893.chain_2314	2	STRG.13899.1,Trinity_GG_24769_c0_g1_i1,blat.proc3829893.chain_2313	3
scaffold_19	spliced_intron	5463673	5463985	+	asmbl_22175,asmbl_22179	none	STRG.22103.1,blat.proc3829881.chain_3055,blat.proc3829881.chain_3056	3	blat.proc3829881.chain_3058,blat.proc3829881.chain_3060	2
scaffold_20	spliced_intron	9656237	9656272	+	asmbl_26036	none	STRG.23495.2	1	Trinity_GG_12937_c0_g1_i3,Trinity_GG_12937_c0_g1_i4,blat.proc3829883.chain_516,blat.proc3829883.chain_517	4
scaffold_5	starts_in_intron	8540705	8540705	-	asmbl_45602	none	blat.proc3829889.chain_2248	1	STRG.6191.1,STRG.6191.3,STRG.6191.4,Trinity_GG_20482_c0_g1_i1,blat.proc3829889.chain_2245,blat.proc3829889.chain_2246,blat.proc3829889.chain_2250	7
scaffold_1	alternate_exon	12338207	12338333	-	asmbl_712,asmbl_719	none	blat.proc3829887.chain_740,blat.proc3829887.chain_744	2	STRG.843.1,STRG.843.2,blat.proc3829887.chain_736,blat.proc3829887.chain_738,blat.proc3829887.chain_739,blat.proc3829887.chain_741,blat.proc3829887.chain_742,blat.proc3829887.chain_745,blat.proc3829887.chain_746	9
scaffold_16	spliced_intron	325937	326065	-	asmbl_16025,asmbl_16026,asmbl_16029,asmbl_16030	none	STRG.19019.1,STRG.19019.2,STRG.19019.3,blat.proc3829897.chain_60,blat.proc3829897.chain_61	5	blat.proc3829897.chain_59,blat.proc3829897.chain_62	2
scaffold_10	alternate_exon	11106737	11106831	+	asmbl_4728	none	STRG.12772.2	1	STRG.12772.1,blat.proc3829877.chain_1337,blat.proc3829877.chain_1339	3
scaffold_5	spliced_intron	11991739	11993287	-	asmbl_45812	none	STRG.6447.1,blat.proc3829889.chain_2521	2	blat.proc3829889.chain_2520	1
scaffold_28	spliced_intron	5611216	5611353	-	asmbl_37624,asmbl_37627	none	STRG.29674.2,STRG.29674.6,Trinity_GG_33655_c0_g1_i9,blat.proc3829901.chain_2806	4	STRG.29674.1,STRG.29674.4,STRG.29674.5,blat.proc3829901.chain_2807,blat.proc3829901.chain_2810	5
scaffold_17	skipped_exon	9826533	9829262	-	asmbl_19246,asmbl_19247,asmbl_19248,asmbl_19249	none	STRG.20586.2,STRG.20586.3,blat.proc3829897.chain_1537,blat.proc3829897.chain_1540	4	STRG.20586.1,STRG.20586.4,blat.proc3829897.chain_1538,blat.proc3829897.chain_1539	4
scaffold_21	spliced_intron	10497987	10498087	-	asmbl_28072,asmbl_28076	none	STRG.24504.1,blat.proc3829899.chain_1649,blat.proc3829899.chain_1650	3	blat.proc3829899.chain_1647,blat.proc3829899.chain_1648	2
scaffold_4	alt_acceptor	17806024	17806025	+	asmbl_43417	none	blat.proc3829873.chain_1627	1	STRG.5378.2,blat.proc3829873.chain_1628	2
scaffold_11	retained_intron	17277488	17277700	-	asmbl_7237	none	Trinity_GG_25035_c1_g1_i2,blat.proc3829893.chain_2790	2	Trinity_GG_25035_c1_g1_i1	1
scaffold_22	skipped_exon	6217249	6218993	-	asmbl_30093	none	STRG.24965.2	1	STRG.24965.1,STRG.24965.4	2
scaffold_1	ends_in_intron	13884427	13884427	-	asmbl_861	none	Trinity_GG_17527_c0_g2_i1,blat.proc3829887.chain_869	2	STRG.993.2,STRG.993.4,blat.proc3829887.chain_868	3
scaffold_6	retained_intron	15095011	15095132	+	asmbl_47591	none	STRG.8263.1,Trinity_GG_4547_c0_g1_i1,blat.proc3829875.chain_668	3	STRG.8263.2	1
scaffold_3	ends_in_intron	13701056	13701056	+	asmbl_40411	none	blat.proc3829873.chain_131	1	STRG.3712.1,STRG.3712.2,blat.proc3829873.chain_129,blat.proc3829873.chain_130	4
scaffold_19	ends_in_intron	2649352	2649352	+	asmbl_22066	none	blat.proc3829881.chain_2920	1	STRG.21940.1,blat.proc3829881.chain_2917,blat.proc3829881.chain_2919	3
scaffold_3	spliced_intron	13648767	13648874	-	asmbl_39226	none	STRG.3705.2,Trinity_GG_19021_c0_g1_i1,blat.proc3829887.chain_3436	3	STRG.3705.1,Trinity_GG_19021_c0_g1_i2,blat.proc3829887.chain_3437	3
scaffold_4	alt_donor	19337804	19337805	-	asmbl_42177	none	STRG.5513.1	1	STRG.5513.2,blat.proc3829889.chain_1519	2
scaffold_18	alt_donor	1328564	1328565	+	asmbl_20361,asmbl_20363,asmbl_20365,asmbl_20366	none	STRG.21011.1,STRG.21011.2,blat.proc3829881.chain_1877,blat.proc3829881.chain_1878,blat.proc3829881.chain_1880	5	STRG.21011.3	1
scaffold_1	alt_donor	13885336	13885337	+	asmbl_2303,asmbl_2307	none	STRG.994.1,blat.proc3829871.chain_1082,blat.proc3829871.chain_1085	3	STRG.994.2,blat.proc3829871.chain_1083,blat.proc3829871.chain_1087	3
scaffold_3	ends_in_intron	7287147	7287147	-	asmbl_38911	none	STRG.3325.4,Trinity_GG_18801_c0_g1_i5,blat.proc3829887.chain_3067	3	STRG.3325.1,STRG.3325.2,STRG.3325.3,blat.proc3829887.chain_3068,blat.proc3829887.chain_3070,blat.proc3829887.chain_3071	6
scaffold_15	alt_donor	9286805	9286806	+	asmbl_14329	none	STRG.18450.2	1	STRG.18450.1,blat.proc3829879.chain_3090,blat.proc3829879.chain_3091	3
scaffold_23	starts_in_intron	10762981	10762981	-	asmbl_31870	none	blat.proc3829899.chain_3300	1	STRG.26250.1,STRG.26250.2,blat.proc3829899.chain_3299	3
scaffold_12	spliced_intron	6545038	6545105	+	asmbl_8660	none	STRG.14744.1,blat.proc3829877.chain_3229	2	STRG.14744.2	1
scaffold_9	spliced_intron	11842283	11842383	-	asmbl_55293,asmbl_55294,asmbl_55296,asmbl_55297,asmbl_55299	none	STRG.11491.1,blat.proc3829891.chain_3619,blat.proc3829891.chain_3620,blat.proc3829891.chain_3623,blat.proc3829891.chain_3624,blat.proc3829891.chain_3625,blat.proc3829891.chain_3626	7	blat.proc3829891.chain_3622	1
scaffold_20	retained_intron	8394496	8394623	-	asmbl_26914	none	STRG.23376.1,blat.proc3829899.chain_427	2	STRG.23376.2,blat.proc3829899.chain_428	2
scaffold_16	spliced_intron	5394585	5394936	+	asmbl_17004,asmbl_17005	none	STRG.19275.1,STRG.19275.2,Trinity_GG_10554_c0_g1_i2,blat.proc3829881.chain_135,blat.proc3829881.chain_137	5	blat.proc3829881.chain_136	1
scaffold_8	ends_in_intron	6116732	6116732	+	asmbl_51928	none	blat.proc3829875.chain_2523	1	STRG.10007.1,STRG.10007.2,Trinity_GG_5582_c0_g1_i7,blat.proc3829875.chain_2524,blat.proc3829875.chain_2527	5
scaffold_322	retained_intron	6499	6737	-	asmbl_40913	none	Trinity_GG_33980_c0_g1_i6,Trinity_GG_34090_c0_g1_i4,blat.proc3829901.chain_3329	3	STRG.30256.2	1
scaffold_5	retained_exon	821479	821971	+	asmbl_43765,asmbl_43766	none	STRG.5632.1,STRG.5632.2	2	STRG.5632.3	1
scaffold_6	spliced_intron	16876680	16877084	-	asmbl_49104	none	STRG.8397.3,blat.proc3829891.chain_723	2	STRG.8397.1,blat.proc3829891.chain_721	2
scaffold_13	alt_acceptor	8211275	8211276	-	asmbl_9913	none	STRG.16097.1	1	STRG.16097.2	1
scaffold_9	retained_exon	16708929	16708985	-	asmbl_55579,asmbl_55580	none	STRG.11809.1,STRG.11809.2,blat.proc3829893.chain_199	3	blat.proc3829893.chain_198	1
scaffold_1	starts_in_intron	1989672	1989672	-	asmbl_100	none	STRG.122.1,blat.proc3829887.chain_35	2	Trinity_GG_17089_c0_g1_i1,blat.proc3829887.chain_34	2
scaffold_7	spliced_intron	6042028	6042598	-	asmbl_49725	none	STRG.8899.4	1	STRG.8899.1,STRG.8899.2,STRG.8899.3,STRG.8899.5,Trinity_GG_22045_c0_g1_i2	5
scaffold_5	spliced_intron	10314754	10314836	+	asmbl_44344	none	STRG.6321.1,blat.proc3829873.chain_2468	2	STRG.6321.2,Trinity_GG_3448_c0_g1_i3,blat.proc3829873.chain_2467	3
scaffold_1	alt_acceptor	12864063	12864064	+	asmbl_2248	none	STRG.911.2	1	STRG.911.1,blat.proc3829871.chain_960	2
scaffold_18	ends_in_intron	206774	206774	+	asmbl_20305	none	Trinity_GG_11543_c0_g1_i4,blat.proc3829881.chain_1840	2	STRG.20965.1,STRG.20965.2,Trinity_GG_11543_c0_g1_i1,Trinity_GG_11543_c0_g1_i6,blat.proc3829881.chain_1837,blat.proc3829881.chain_1838,blat.proc3829881.chain_1839,blat.proc3829881.chain_1841,blat.proc3829881.chain_1842,blat.proc3829881.chain_1843	10
scaffold_28	starts_in_intron	3115440	3115440	-	asmbl_37455	none	blat.proc3829901.chain_2620	1	blat.proc3829901.chain_2618	1
scaffold_22	alt_acceptor	7345679	7345680	+	asmbl_29466	none	STRG.25052.1,Trinity_GG_13838_c1_g1_i2,blat.proc3829883.chain_2069	3	STRG.25052.2	1
scaffold_12	alt_acceptor	4951547	4951548	-	asmbl_7599	none	STRG.14653.2,blat.proc3829893.chain_3044	2	STRG.14653.1,blat.proc3829893.chain_3045,blat.proc3829893.chain_3046	3
scaffold_4	spliced_intron	8989384	8989559	-	asmbl_41537	none	STRG.4717.5	1	Trinity_GG_19623_c1_g1_i2,blat.proc3829889.chain_758	2
scaffold_21	ends_in_intron	5176198	5176198	-	asmbl_27648	none	Trinity_GG_30430_c0_g1_i1,blat.proc3829899.chain_1133	2	STRG.24038.1,blat.proc3829899.chain_1128,blat.proc3829899.chain_1129	3
scaffold_5	retained_intron	10315083	10315200	+	asmbl_44343	none	STRG.6321.2,Trinity_GG_3448_c0_g1_i3,blat.proc3829873.chain_2467	3	STRG.6321.1,blat.proc3829873.chain_2468	2
scaffold_24	alt_donor	6225854	6225855	-	asmbl_32930	none	STRG.26664.3	1	Trinity_GG_31899_c0_g1_i9,blat.proc3829899.chain_3692	2
scaffold_7	alternate_exon	1401848	1402106	-	asmbl_49536	none	blat.proc3829891.chain_923	1	STRG.8638.1,blat.proc3829891.chain_921,blat.proc3829891.chain_926,blat.proc3829891.chain_927	4
scaffold_16	starts_in_intron	8042759	8042759	+	asmbl_17171	none	Trinity_GG_10630_c0_g1_i5,blat.proc3829881.chain_280	2	STRG.19437.1,STRG.19437.2,Trinity_GG_10630_c0_g1_i2,Trinity_GG_10630_c0_g1_i4,blat.proc3829881.chain_279,blat.proc3829881.chain_281,blat.proc3829881.chain_282,blat.proc3829881.chain_283	8
scaffold_25	skipped_exon	7343656	7345494	+	asmbl_33667	none	STRG.27572.1,blat.proc3829885.chain_549	2	STRG.27572.2	1
scaffold_4	retained_intron	10872473	10872693	-	asmbl_41606,asmbl_41607	none	blat.proc3829889.chain_806,blat.proc3829889.chain_808	2	STRG.4807.1,blat.proc3829889.chain_807,blat.proc3829889.chain_809	3
scaffold_16	alt_donor	3577193	3577194	-	asmbl_16163	none	STRG.19161.2	1	STRG.19161.1,blat.proc3829897.chain_152	2
scaffold_26	alt_donor	10153961	10153962	+	asmbl_35825,asmbl_35826	none	STRG.28514.3,Trinity_GG_15781_c0_g1_i1,blat.proc3829885.chain_1554,blat.proc3829885.chain_1555	4	STRG.28514.1,STRG.28514.2,Trinity_GG_15781_c0_g1_i2,blat.proc3829885.chain_1553	4
scaffold_25	spliced_intron	6325008	6325126	-	asmbl_34329,asmbl_34331,asmbl_34332,asmbl_34333,asmbl_34334,asmbl_34335	none	STRG.27499.1,STRG.27499.2,STRG.27499.3,blat.proc3829901.chain_861,blat.proc3829901.chain_862,blat.proc3829901.chain_864,blat.proc3829901.chain_865	7	Trinity_GG_32449_c0_g1_i7,blat.proc3829901.chain_863	2
scaffold_27	spliced_intron	3872262	3872498	+	asmbl_36192	none	blat.proc3829885.chain_1956	1	STRG.28827.3,STRG.28827.4,Trinity_GG_15976_c0_g2_i22,blat.proc3829885.chain_1964	4
scaffold_4	alt_donor	19448563	19448564	+	asmbl_43493	none	STRG.5530.2	1	STRG.5530.1,blat.proc3829873.chain_1740	2
scaffold_26	retained_intron	10119226	10119413	-	asmbl_35094	none	STRG.28511.3	1	STRG.28511.1,STRG.28511.2,Trinity_GG_32936_c0_g1_i13,Trinity_GG_32936_c0_g1_i3,Trinity_GG_32936_c0_g1_i5,Trinity_GG_32936_c0_g1_i8,blat.proc3829901.chain_1632,blat.proc3829901.chain_1633,blat.proc3829901.chain_1635,blat.proc3829901.chain_1636	10
scaffold_10	alternate_exon	5548807	5549932	+	asmbl_4465	none	STRG.12366.1,blat.proc3829877.chain_1012	2	STRG.12366.2,blat.proc3829877.chain_1011	2
scaffold_14	retained_intron	583521	583652	+	asmbl_11741	none	STRG.16728.1,Trinity_GG_9217_c0_g1_i3,blat.proc3829879.chain_1457	3	STRG.16728.2	1
scaffold_27	skipped_exon	4944928	4945777	+	asmbl_36288,asmbl_36289	none	STRG.28914.4,STRG.28914.7	2	STRG.28914.1,STRG.28914.2,STRG.28914.3,STRG.28914.5,STRG.28914.6,blat.proc3829885.chain_2067,blat.proc3829885.chain_2069	7
scaffold_17	retained_intron	2535887	2536718	-	asmbl_18800	none	STRG.20035.2,blat.proc3829897.chain_985	2	STRG.20035.1,STRG.20035.3,blat.proc3829897.chain_984,blat.proc3829897.chain_987,blat.proc3829897.chain_988	5
scaffold_2	alt_donor	7894037	7894038	+	asmbl_24627,asmbl_24633	none	STRG.2086.3,blat.proc3829871.chain_2189,blat.proc3829871.chain_2195	3	STRG.2086.1,STRG.2086.2,blat.proc3829871.chain_2191,blat.proc3829871.chain_2193,blat.proc3829871.chain_2194,blat.proc3829871.chain_2196,blat.proc3829871.chain_2199	7
scaffold_2	retained_intron	14276152	14276257	+	asmbl_24927,asmbl_24929,asmbl_24932,asmbl_24934	none	STRG.2425.3,blat.proc3829871.chain_2541,blat.proc3829871.chain_2542,blat.proc3829871.chain_2543	4	STRG.2425.1,blat.proc3829871.chain_2544,blat.proc3829871.chain_2547	3
scaffold_14	starts_in_intron	3555933	3555933	-	asmbl_13004	none	STRG.16931.3	1	STRG.16931.1,STRG.16931.2,blat.proc3829895.chain_1640,blat.proc3829895.chain_1641	4
scaffold_17	retained_intron	10240432	10240572	-	asmbl_19289	none	STRG.20631.1,Trinity_GG_28591_c0_g1_i1,blat.proc3829897.chain_1543	3	STRG.20631.2,Trinity_GG_28591_c0_g1_i2,blat.proc3829897.chain_1542	3
scaffold_20	spliced_intron	11924841	11925165	+	asmbl_26255	none	STRG.23680.2,blat.proc3829883.chain_818	2	STRG.23680.1,blat.proc3829883.chain_819	2
scaffold_28	skipped_exon	5026973	5028451	+	asmbl_38261	none	Trinity_GG_16373_c2_g1_i5,blat.proc3829885.chain_2644	2	STRG.29640.1,STRG.29640.2,STRG.29640.3,Trinity_GG_16373_c2_g1_i2,blat.proc3829885.chain_2640,blat.proc3829885.chain_2641,blat.proc3829885.chain_2642	7
scaffold_17	alt_donor	11567714	11567715	+	asmbl_18363	none	Trinity_GG_11317_c0_g1_i1,blat.proc3829881.chain_1479	2	STRG.20693.2	1
scaffold_7	spliced_intron	9311935	9312011	+	asmbl_50958,asmbl_50959	none	STRG.9133.1,Trinity_GG_5081_c0_g1_i1,Trinity_GG_5081_c0_g1_i2,blat.proc3829875.chain_1611,blat.proc3829875.chain_1612	5	blat.proc3829875.chain_1610	1
scaffold_5	alt_acceptor	18560925	18560926	+	asmbl_44922,asmbl_44923,asmbl_44924,asmbl_44927	none	STRG.6978.1,STRG.6978.4,Trinity_GG_3847_c0_g1_i2,Trinity_GG_3847_c0_g1_i8,blat.proc3829873.chain_3146,blat.proc3829873.chain_3147,blat.proc3829873.chain_3148	7	STRG.6978.2,STRG.6978.3,blat.proc3829873.chain_3150	3
scaffold_5	alt_donor	4866436	4866437	+	asmbl_43975	none	Trinity_GG_3273_c0_g1_i4,blat.proc3829873.chain_2136	2	STRG.5938.1,blat.proc3829873.chain_2137	2
scaffold_12	retained_intron	15204227	15204314	+	asmbl_9075	none	STRG.15305.1,Trinity_GG_8386_c0_g1_i1,blat.proc3829877.chain_3672	3	STRG.15305.2,Trinity_GG_8386_c0_g1_i2,blat.proc3829877.chain_3671	3
scaffold_23	skipped_exon	5862921	5863836	-	asmbl_31673	none	Trinity_GG_31529_c0_g1_i4,blat.proc3829899.chain_3063	2	STRG.25948.1,Trinity_GG_31529_c0_g1_i3,blat.proc3829899.chain_3062	3
scaffold_9	retained_exon	16689720	16689740	-	asmbl_55575	none	STRG.11810.1,blat.proc3829893.chain_201	2	blat.proc3829893.chain_202	1
scaffold_6	ends_in_intron	3025779	3025779	-	asmbl_48161	none	Trinity_GG_21121_c2_g1_i1,blat.proc3829889.chain_3330	2	STRG.7301.1,blat.proc3829889.chain_3329	2
scaffold_13	spliced_intron	7371132	7371249	+	asmbl_11027	none	STRG.16021.1,Trinity_GG_8780_c0_g1_i1,blat.proc3829879.chain_689	3	blat.proc3829879.chain_690	1
scaffold_3	alt_acceptor	3830193	3830194	-	asmbl_38741,asmbl_38743	none	STRG.3103.1,STRG.3103.3	2	STRG.3103.2,blat.proc3829887.chain_2872,blat.proc3829887.chain_2873	3
scaffold_1	alt_acceptor	11572747	11572748	-	asmbl_642	none	STRG.766.2	1	STRG.766.1,blat.proc3829887.chain_578,blat.proc3829887.chain_579	3
scaffold_22	skipped_exon	690259	693133	+	asmbl_29178	none	STRG.24705.3	1	STRG.24705.1,STRG.24705.2,Trinity_GG_13663_c0_g1_i1,Trinity_GG_13663_c0_g1_i3,blat.proc3829883.chain_1766	5
scaffold_1	retained_exon	12462825	12462908	-	asmbl_725,asmbl_726	none	STRG.864.2,STRG.864.3	2	STRG.864.1,STRG.864.4	2
scaffold_19	ends_in_intron	5344181	5344181	-	asmbl_21360	none	blat.proc3829897.chain_2882	1	STRG.22090.1,STRG.22090.2,STRG.22090.3,STRG.22090.4,blat.proc3829897.chain_2876,blat.proc3829897.chain_2877	6
scaffold_6	ends_in_intron	13225473	13225473	+	asmbl_47437	none	blat.proc3829875.chain_510	1	STRG.8077.1,STRG.8077.2,blat.proc3829875.chain_505,blat.proc3829875.chain_506	4
scaffold_15	spliced_intron	4753368	4753541	+	asmbl_14111	none	STRG.18176.1,blat.proc3829879.chain_2826	2	STRG.18176.2,Trinity_GG_9981_c0_g1_i1,blat.proc3829879.chain_2825,blat.proc3829879.chain_2827	4
scaffold_9	retained_exon	645343	645735	+	asmbl_53763	none	STRG.10785.2	1	STRG.10785.3	1
scaffold_11	alt_donor	1824781	1824782	-	asmbl_6425	none	STRG.13331.2	1	STRG.13331.1	1
scaffold_13	alt_acceptor	3522768	3522769	-	asmbl_9508	none	STRG.15654.3,blat.proc3829895.chain_400	2	STRG.15654.1,STRG.15654.2,blat.proc3829895.chain_399	3
scaffold_4	retained_exon	5034529	5034615	-	asmbl_41288	none	STRG.4398.1	1	STRG.4398.2	1
scaffold_10	spliced_intron	13521752	13521830	+	asmbl_4883	none	STRG.12936.2,blat.proc3829877.chain_1513	2	STRG.12936.1,Trinity_GG_7137_c0_g1_i2,blat.proc3829877.chain_1512	3
scaffold_17	alt_donor	7467331	7467332	+	asmbl_18038	none	STRG.20384.2	1	STRG.20384.1,blat.proc3829881.chain_1150	2
scaffold_18	spliced_intron	4605161	4605249	-	asmbl_19849	none	STRG.21236.1,blat.proc3829897.chain_2111	2	blat.proc3829897.chain_2110	1
scaffold_1445	retained_intron	333	442	+	asmbl_13869	none	STRG.30579.1,Trinity_GG_16902_c0_g1_i1,blat.proc3829885.chain_3526	3	STRG.30579.2	1
scaffold_4	retained_intron	8822899	8822991	-	asmbl_41532	none	STRG.4697.1,blat.proc3829889.chain_743	2	STRG.4697.2,blat.proc3829889.chain_745	2
scaffold_6	retained_intron	12999352	13000120	-	asmbl_48801,asmbl_48803	none	STRG.8061.7,Trinity_GG_21547_c0_g1_i11,Trinity_GG_21547_c0_g1_i16,blat.proc3829891.chain_268,blat.proc3829891.chain_270	5	STRG.8061.8,Trinity_GG_21547_c0_g1_i7,blat.proc3829891.chain_269	3
scaffold_5	retained_intron	13881229	13881333	+	asmbl_44560	none	blat.proc3829873.chain_2662	1	STRG.6605.1,STRG.6605.2,blat.proc3829873.chain_2661,blat.proc3829873.chain_2663	4
scaffold_10	spliced_intron	3039893	3040106	+	asmbl_4299,asmbl_4300	none	STRG.12116.1,STRG.12116.2,Trinity_GG_6702_c0_g1_i1,blat.proc3829877.chain_754,blat.proc3829877.chain_755	5	blat.proc3829877.chain_753	1
scaffold_15	retained_intron	15188079	15189525	+	asmbl_14674,asmbl_14680,asmbl_14686,asmbl_14689	none	blat.proc3829879.chain_3472,blat.proc3829879.chain_3478,blat.proc3829879.chain_3480,blat.proc3829879.chain_3485,blat.proc3829879.chain_3486	5	blat.proc3829879.chain_3473,blat.proc3829879.chain_3487	2
scaffold_3	alt_donor	15745603	15745604	-	asmbl_39387,asmbl_39388,asmbl_39390	none	STRG.3850.1,blat.proc3829887.chain_3578,blat.proc3829887.chain_3579,blat.proc3829887.chain_3581	4	blat.proc3829887.chain_3580	1
scaffold_18	retained_intron	1899014	1899224	-	asmbl_19690,asmbl_19691,asmbl_19695,asmbl_19696,asmbl_19701,asmbl_19702,asmbl_19705	none	STRG.21072.2,STRG.21072.6,STRG.21072.7,blat.proc3829897.chain_1897,blat.proc3829897.chain_1899,blat.proc3829897.chain_1900,blat.proc3829897.chain_1901	7	STRG.21072.8	1
scaffold_9	alt_acceptor	11876870	11876871	+	asmbl_54373	none	STRG.11498.1	1	Trinity_GG_6418_c0_g1_i2,blat.proc3829877.chain_280	2
scaffold_8	starts_in_intron	6371561	6371561	-	asmbl_52875	none	blat.proc3829891.chain_2179	1	STRG.10029.1,blat.proc3829891.chain_2180	2
scaffold_11	skipped_exon	3496428	3498550	+	asmbl_5400	none	STRG.13472.4	1	STRG.13472.3	1
scaffold_5	alt_donor	7408039	7408040	-	asmbl_45559,asmbl_45560	none	STRG.6135.2,STRG.6135.3	2	STRG.6135.1	1
scaffold_28	starts_in_intron	5390468	5390468	+	asmbl_38285	none	blat.proc3829885.chain_2786	1	STRG.29664.1,Trinity_GG_16450_c0_g1_i2,Trinity_GG_16450_c0_g1_i7,Trinity_GG_16450_c0_g1_i9,blat.proc3829885.chain_2783,blat.proc3829885.chain_2784,blat.proc3829885.chain_2787	7
scaffold_21	alternate_exon	1757835	1757862	-	asmbl_27448	none	blat.proc3829899.chain_886	1	STRG.23809.1,STRG.23809.2,blat.proc3829899.chain_887,blat.proc3829899.chain_888	4
scaffold_18	alternate_exon	5582480	5582858	-	asmbl_19898	none	STRG.21301.1,Trinity_GG_28912_c0_g1_i1,blat.proc3829897.chain_2187	3	Trinity_GG_28953_c2_g1_i1	1
scaffold_5	alt_acceptor	6927578	6927579	+	asmbl_44124	none	STRG.6098.1,blat.proc3829873.chain_2170	2	STRG.6098.2	1
scaffold_24	spliced_intron	3655857	3656169	+	asmbl_32161	none	STRG.26528.3,Trinity_GG_14654_c0_g1_i10,blat.proc3829883.chain_3403	3	STRG.26528.5,Trinity_GG_14654_c0_g1_i1,blat.proc3829883.chain_3409	3
scaffold_12	alt_acceptor	12291136	12291137	-	asmbl_7988	none	STRG.15114.2	1	STRG.15114.5,STRG.15114.6	2
scaffold_13	alt_donor	10433299	10433300	+	asmbl_11222,asmbl_11224,asmbl_11225	none	STRG.16236.1,STRG.16236.2,STRG.16236.4,blat.proc3829879.chain_969,blat.proc3829879.chain_970	5	STRG.16236.3,blat.proc3829879.chain_971	2
scaffold_1	ends_in_intron	12789509	12789509	-	asmbl_773	none	blat.proc3829887.chain_768	1	STRG.898.1,STRG.898.3,blat.proc3829887.chain_767,blat.proc3829887.chain_769	4
scaffold_23	alt_donor	5583876	5583877	+	asmbl_30882	none	STRG.25912.3,blat.proc3829883.chain_2729	2	STRG.25912.1,STRG.25912.2,Trinity_GG_14263_c0_g1_i1,blat.proc3829883.chain_2728	4
scaffold_22	alt_donor	4232258	4232259	-	asmbl_29977	none	STRG.24838.1	1	STRG.24838.2,STRG.24838.3,STRG.24838.4,blat.proc3829899.chain_1976,blat.proc3829899.chain_1977	5
scaffold_14	retained_exon	1721212	1721487	+	asmbl_11808	none	STRG.16801.1,Trinity_GG_9249_c0_g1_i2,blat.proc3829879.chain_1528	3	STRG.16801.2,Trinity_GG_9249_c0_g1_i1,blat.proc3829879.chain_1527	3
scaffold_7	skipped_exon	13575743	13576051	+	asmbl_51246	none	STRG.9451.2,Trinity_GG_5241_c0_g1_i2,blat.proc3829875.chain_1895	3	STRG.9451.1,Trinity_GG_5241_c0_g1_i1,blat.proc3829875.chain_1896	3
scaffold_27	ends_in_intron	7012036	7012036	-	asmbl_37044	none	STRG.29048.3	1	STRG.29048.2	1
scaffold_6	starts_in_intron	3054520	3054520	+	asmbl_46748,asmbl_46750,asmbl_46752	none	blat.proc3829873.chain_3441,blat.proc3829873.chain_3444,blat.proc3829873.chain_3446	3	STRG.7308.1,blat.proc3829873.chain_3438,blat.proc3829873.chain_3439	3
scaffold_9	starts_in_intron	4694	4694	-	asmbl_54761	none	Trinity_GG_23003_c0_g1_i1,blat.proc3829891.chain_2957	2	STRG.10752.3,blat.proc3829891.chain_2956	2
scaffold_25	starts_in_intron	5157719	5157719	-	asmbl_34228	none	blat.proc3829901.chain_745	1	STRG.27422.1,blat.proc3829901.chain_742,blat.proc3829901.chain_743,blat.proc3829901.chain_746,blat.proc3829901.chain_747,blat.proc3829901.chain_748,blat.proc3829901.chain_749	7
scaffold_17	starts_in_intron	8808410	8808410	-	asmbl_19163	none	blat.proc3829897.chain_1440	1	STRG.20479.1,STRG.20479.2,blat.proc3829897.chain_1441,blat.proc3829897.chain_1442,blat.proc3829897.chain_1443	5
scaffold_6	spliced_intron	92644	92783	+	asmbl_46586	none	STRG.7060.1,Trinity_GG_3889_c0_g1_i1,blat.proc3829873.chain_3207	3	STRG.7060.2,Trinity_GG_3889_c0_g1_i2,blat.proc3829873.chain_3206	3
scaffold_5	spliced_intron	4866436	4866834	+	asmbl_43975	none	blat.proc3829873.chain_2136	1	STRG.5938.3,Trinity_GG_3273_c0_g1_i2,blat.proc3829873.chain_2134,blat.proc3829873.chain_2135	4
scaffold_6	alt_acceptor	753055	753056	-	asmbl_48009	none	STRG.7128.2	1	STRG.7128.1,blat.proc3829889.chain_3116	2
scaffold_9	retained_intron	61590	61877	-	asmbl_54767	none	STRG.10754.1,STRG.10754.2,Trinity_GG_23008_c0_g1_i1,blat.proc3829891.chain_2963	4	blat.proc3829891.chain_2964	1
scaffold_5	starts_in_intron	15305368	15305368	+	asmbl_44652,asmbl_44653	none	STRG.6715.2,Trinity_GG_3658_c0_g1_i2,blat.proc3829873.chain_2816	3	STRG.6715.1,Trinity_GG_3658_c0_g1_i1,blat.proc3829873.chain_2817	3
scaffold_6	alternate_exon	10254698	10256040	-	asmbl_48615	none	STRG.7863.1,blat.proc3829891.chain_128	2	STRG.7863.2	1
scaffold_5	skipped_exon	2608393	2611347	+	asmbl_43855	none	blat.proc3829873.chain_1902	1	STRG.5778.1,blat.proc3829873.chain_1904	2
scaffold_14	retained_intron	7508898	7509085	-	asmbl_13204,asmbl_13206	none	STRG.17180.2,blat.proc3829895.chain_1868,blat.proc3829895.chain_1869	3	STRG.17180.1,blat.proc3829895.chain_1866,blat.proc3829895.chain_1870	3
scaffold_23	alt_acceptor	9956318	9956319	-	asmbl_31829,asmbl_31832	none	STRG.26184.1,blat.proc3829899.chain_3241,blat.proc3829899.chain_3243	3	STRG.26184.2,STRG.26184.3	2
scaffold_27	alt_acceptor	3145195	3145196	+	asmbl_36154	none	STRG.28785.1,blat.proc3829885.chain_1718	2	STRG.28785.2	1
scaffold_20	retained_intron	11538861	11538952	-	asmbl_27076	none	Trinity_GG_30174_c0_g1_i2,blat.proc3829899.chain_636	2	STRG.23648.1,Trinity_GG_30174_c0_g1_i1,blat.proc3829899.chain_635	3
scaffold_27	retained_intron	3090524	3090653	-	asmbl_36842,asmbl_36847	none	STRG.28775.2,Trinity_GG_33109_c0_g1_i3,blat.proc3829901.chain_1949	3	STRG.28775.1,STRG.28775.3,STRG.28775.4,STRG.28775.5,blat.proc3829901.chain_1946,blat.proc3829901.chain_1947,blat.proc3829901.chain_1948,blat.proc3829901.chain_1950,blat.proc3829901.chain_1951	9
scaffold_14	retained_intron	3240126	3240355	+	asmbl_11907	none	blat.proc3829879.chain_1549	1	STRG.16901.1,STRG.16901.2,blat.proc3829879.chain_1550,blat.proc3829879.chain_1551,blat.proc3829879.chain_1553	5
scaffold_6	retained_exon	12551792	12552239	-	asmbl_48761	none	STRG.8010.1	1	STRG.8010.3,blat.proc3829891.chain_318	2
scaffold_10	spliced_intron	12840971	12841059	-	asmbl_3734	none	STRG.12865.1,blat.proc3829893.chain_1376	2	blat.proc3829893.chain_1375	1
scaffold_21	spliced_intron	256742	257073	-	asmbl_27314,asmbl_27315,asmbl_27318,asmbl_27319,asmbl_27320,asmbl_27321	none	STRG.23718.2,STRG.23718.3,STRG.23718.4,STRG.23718.5,STRG.23718.6,blat.proc3829899.chain_782,blat.proc3829899.chain_783,blat.proc3829899.chain_785,blat.proc3829899.chain_787,blat.proc3829899.chain_788	10	STRG.23718.1,STRG.23718.7,Trinity_GG_30232_c0_g1_i4,blat.proc3829899.chain_786,blat.proc3829899.chain_790,blat.proc3829899.chain_791,blat.proc3829899.chain_794	7
scaffold_28	spliced_intron	5730864	5730935	+	asmbl_38297	none	STRG.29685.2,Trinity_GG_16451_c0_g1_i2,blat.proc3829885.chain_2788	3	STRG.29685.1,Trinity_GG_16451_c0_g1_i1,blat.proc3829885.chain_2789	3
scaffold_27	starts_in_intron	570906	570906	+	asmbl_35916	none	STRG.28558.3,blat.proc3829885.chain_1605	2	STRG.28558.2,blat.proc3829885.chain_1603,blat.proc3829885.chain_1604	3
scaffold_12	retained_exon	4559127	4559150	-	asmbl_7536	none	STRG.14618.1,blat.proc3829893.chain_2974	2	blat.proc3829893.chain_2972	1
scaffold_736	retained_intron	2408	2427	+	asmbl_51592	none	Trinity_GG_16831_c0_g1_i1	1	STRG.30426.1	1
scaffold_13	starts_in_intron	13231844	13231844	+	asmbl_11354	none	blat.proc3829879.chain_1163	1	STRG.16383.1,blat.proc3829879.chain_1162	2
scaffold_4	retained_intron	3884999	3885621	-	asmbl_41201,asmbl_41202,asmbl_41203	none	STRG.4295.1,STRG.4295.2,STRG.4295.3,Trinity_GG_19422_c1_g1_i1,blat.proc3829889.chain_421,blat.proc3829889.chain_422,blat.proc3829889.chain_423	7	STRG.4295.4	1
scaffold_8	spliced_intron	16503452	16503680	-	asmbl_53409,asmbl_53420,asmbl_53423,asmbl_53428	none	STRG.10621.5,Trinity_GG_22960_c0_g1_i9,blat.proc3829891.chain_2858,blat.proc3829891.chain_2859,blat.proc3829891.chain_2865	5	Trinity_GG_22960_c0_g1_i24,blat.proc3829891.chain_2856	2
scaffold_28	alt_acceptor	2405995	2405996	+	asmbl_38060,asmbl_38061	none	STRG.29393.4,blat.proc3829885.chain_2485	2	STRG.29393.1,STRG.29393.2,STRG.29393.3,blat.proc3829885.chain_2482,blat.proc3829885.chain_2483,blat.proc3829885.chain_2484	6
scaffold_7	retained_intron	17808816	17808944	+	asmbl_51384,asmbl_51385,asmbl_51387	none	blat.proc3829875.chain_2099,blat.proc3829875.chain_2100,blat.proc3829875.chain_2102	3	STRG.9616.1,blat.proc3829875.chain_2097,blat.proc3829875.chain_2098,blat.proc3829875.chain_2103,blat.proc3829875.chain_2104,blat.proc3829875.chain_2105	6
scaffold_14	alt_donor	7027527	7027528	+	asmbl_12103	none	STRG.17126.1,Trinity_GG_9449_c0_g1_i5,blat.proc3829879.chain_1904,blat.proc3829879.chain_1905	4	blat.proc3829879.chain_1903	1
scaffold_7	retained_intron	5915696	5915876	-	asmbl_49717	none	blat.proc3829891.chain_1164	1	STRG.8887.1,STRG.8887.2,STRG.8887.3,STRG.8887.4,STRG.8887.5,blat.proc3829891.chain_1163,blat.proc3829891.chain_1165,blat.proc3829891.chain_1167,blat.proc3829891.chain_1168	9
scaffold_10	retained_exon	1175351	1175397	+	asmbl_4196	none	STRG.12000.2,blat.proc3829877.chain_708	2	STRG.12000.1,blat.proc3829877.chain_711	2
scaffold_17	starts_in_intron	8605391	8605391	-	asmbl_19152	none	blat.proc3829897.chain_1428	1	STRG.20461.1,STRG.20461.2,Trinity_GG_28522_c1_g1_i1,Trinity_GG_28522_c1_g2_i1,blat.proc3829897.chain_1429,blat.proc3829897.chain_1430	6
scaffold_5	spliced_intron	19440530	19440725	+	asmbl_44972	none	STRG.7031.1,Trinity_GG_3857_c0_g1_i2,blat.proc3829873.chain_3162	3	Trinity_GG_3857_c0_g1_i1,blat.proc3829873.chain_3161	2
scaffold_2	retained_intron	2076731	2076944	+	asmbl_24258,asmbl_24259	none	STRG.1663.1,STRG.1663.2,Trinity_GG_950_c0_g1_i1,Trinity_GG_950_c0_g1_i3,blat.proc3829871.chain_1747,blat.proc3829871.chain_1748	6	blat.proc3829871.chain_1750	1
scaffold_25	starts_in_intron	6302449	6302449	+	asmbl_33612	none	blat.proc3829885.chain_467	1	STRG.27516.1,blat.proc3829885.chain_469,blat.proc3829885.chain_470,blat.proc3829885.chain_471,blat.proc3829885.chain_472,blat.proc3829885.chain_473,blat.proc3829885.chain_474	7
scaffold_12	retained_intron	4984474	4984577	+	asmbl_8592	none	blat.proc3829877.chain_3083	1	blat.proc3829877.chain_3085	1
scaffold_9	starts_in_intron	9533485	9533485	-	asmbl_55156	none	STRG.11302.2	1	STRG.11302.1,blat.proc3829891.chain_3448,blat.proc3829891.chain_3449,blat.proc3829891.chain_3450	4
scaffold_18	starts_in_intron	5915948	5915948	+	asmbl_20656	none	Trinity_GG_11756_c0_g1_i1,blat.proc3829881.chain_2263	2	Trinity_GG_11756_c0_g1_i2,blat.proc3829881.chain_2262	2
scaffold_2	alt_acceptor	3995654	3995655	+	asmbl_24346	none	STRG.1836.2,blat.proc3829871.chain_1889	2	STRG.1836.1,blat.proc3829871.chain_1890	2
scaffold_2	retained_intron	15686210	15686390	+	asmbl_25093	none	blat.proc3829871.chain_2713	1	STRG.2521.2,Trinity_GG_1432_c0_g1_i2,blat.proc3829871.chain_2714	3
scaffold_25	starts_in_intron	1895455	1895455	-	asmbl_34036	none	blat.proc3829901.chain_520	1	STRG.27181.1,blat.proc3829901.chain_521	2
scaffold_19	retained_intron	5463673	5463985	+	asmbl_22178	none	blat.proc3829881.chain_3058,blat.proc3829881.chain_3060	2	STRG.22103.1,blat.proc3829881.chain_3055,blat.proc3829881.chain_3056	3
scaffold_5	alt_acceptor	19054805	19054806	+	asmbl_44958	none	Trinity_GG_3807_c0_g1_i2,blat.proc3829873.chain_3071	2	STRG.7009.1,Trinity_GG_3807_c0_g1_i1,blat.proc3829873.chain_3072	3
scaffold_4	spliced_intron	4117926	4118044	-	asmbl_41233	none	blat.proc3829889.chain_362	1	Trinity_GG_19381_c0_g1_i2,blat.proc3829889.chain_361	2
scaffold_6	spliced_intron	11464105	11464309	-	asmbl_48691,asmbl_48692	none	STRG.7935.1,blat.proc3829891.chain_179,blat.proc3829891.chain_181	3	blat.proc3829891.chain_180	1
scaffold_15	starts_in_intron	14041716	14041716	+	asmbl_14615	none	Trinity_GG_10335_c0_g1_i2,blat.proc3829879.chain_3429	2	STRG.18833.1,blat.proc3829879.chain_3427,blat.proc3829879.chain_3428	3
scaffold_8	retained_intron	11277835	11278003	-	asmbl_53141	none	STRG.10339.2,Trinity_GG_22740_c0_g1_i4,blat.proc3829891.chain_2437	3	STRG.10339.1,STRG.10339.3,STRG.10339.4,blat.proc3829891.chain_2438,blat.proc3829891.chain_2439,blat.proc3829891.chain_2440	6
scaffold_5	alt_donor	10541420	10541421	+	asmbl_44350	none	STRG.6333.1	1	STRG.6333.2,Trinity_GG_3455_c0_g1_i2,blat.proc3829873.chain_2481	3
scaffold_26	spliced_intron	3673200	3673300	+	asmbl_35340,asmbl_35342,asmbl_35343,asmbl_35344	none	STRG.28032.1,blat.proc3829885.chain_1029,blat.proc3829885.chain_1030,blat.proc3829885.chain_1032,blat.proc3829885.chain_1033	5	Trinity_GG_15479_c1_g1_i2,blat.proc3829885.chain_1031	2
scaffold_14	retained_intron	11569194	11569328	-	asmbl_13479	none	STRG.17478.2	1	STRG.17478.1,blat.proc3829895.chain_2197	2
scaffold_20	retained_intron	9656219	9656254	+	asmbl_26034	none	Trinity_GG_12937_c0_g1_i3,Trinity_GG_12937_c0_g1_i4,blat.proc3829883.chain_516,blat.proc3829883.chain_517	4	STRG.23495.1	1
scaffold_5	retained_intron	5026994	5027082	-	asmbl_45411	none	Trinity_GG_22498_c0_g1_i1	1	STRG.5947.1,blat.proc3829889.chain_2013,blat.proc3829891.chain_1998	3
scaffold_26	skipped_exon	4332683	4333629	-	asmbl_34822	none	STRG.28149.1	1	STRG.28149.4	1
scaffold_13	alt_acceptor	3266822	3266823	-	asmbl_9484	none	STRG.15621.1,blat.proc3829895.chain_358	2	STRG.15621.2	1
scaffold_15	skipped_exon	14510889	14513245	+	asmbl_14631	none	STRG.18853.1,blat.proc3829879.chain_3443	2	STRG.18853.2,STRG.18853.3,blat.proc3829879.chain_3442,blat.proc3829879.chain_3444	4
scaffold_8	alt_donor	18251416	18251417	-	asmbl_53534,asmbl_53535,asmbl_53536,asmbl_53537,asmbl_53538,asmbl_53539,asmbl_53540,asmbl_53541,asmbl_53542	none	STRG.10723.1,STRG.10723.2,STRG.10723.3,STRG.10723.5,blat.proc3829891.chain_2919,blat.proc3829891.chain_2921,blat.proc3829891.chain_2922,blat.proc3829891.chain_2923,blat.proc3829891.chain_2924,blat.proc3829891.chain_2925	10	STRG.10723.4,Trinity_GG_22985_c0_g1_i3,blat.proc3829891.chain_2920	3
scaffold_20	starts_in_intron	6975539	6975539	+	asmbl_25843	none	blat.proc3829883.chain_382	1	STRG.23248.1	1
scaffold_13	alt_acceptor	7081818	7081819	-	asmbl_9805	none	STRG.15989.2,Trinity_GG_26011_c0_g1_i2,blat.proc3829895.chain_763	3	STRG.15989.1	1
scaffold_23	alternate_exon	809222	811001	-	asmbl_31325	none	STRG.25556.3,Trinity_GG_31307_c0_g1_i5,Trinity_GG_31307_c0_g1_i7,blat.proc3829899.chain_2667,blat.proc3829899.chain_2671	5	STRG.25556.1	1
scaffold_731	spliced_intron	2273	2411	+	asmbl_51584	none	STRG.30421.2	1	STRG.30421.1,Trinity_GG_16826_c0_g1_i1,blat.proc3829885.chain_3422	3
scaffold_26	retained_intron	9315672	9315826	+	asmbl_35742,asmbl_35743,asmbl_35745	none	Trinity_GG_15765_c0_g1_i2,blat.proc3829885.chain_1515,blat.proc3829885.chain_1517,blat.proc3829885.chain_1518	4	STRG.28479.1,STRG.28479.2,STRG.28479.3,blat.proc3829885.chain_1519,blat.proc3829885.chain_1520	5
scaffold_5	alt_donor	821199	821200	+	asmbl_43765,asmbl_43766	none	STRG.5632.1,STRG.5632.2	2	STRG.5632.3	1
scaffold_10	alternate_exon	3929710	3930373	-	asmbl_3159	none	blat.proc3829893.chain_693	1	STRG.12230.3,STRG.12230.4,STRG.12230.5,blat.proc3829893.chain_691,blat.proc3829893.chain_695	5
scaffold_16	alt_acceptor	10441842	10441843	+	asmbl_17331	none	STRG.19601.1,Trinity_GG_10746_c0_g1_i1,Trinity_GG_10746_c0_g1_i3,blat.proc3829881.chain_486	4	STRG.19601.3	1
scaffold_4	retained_intron	19128360	19128385	+	asmbl_43469	none	STRG.5494.1	1	STRG.5494.2,blat.proc3829873.chain_1704	2
scaffold_5	ends_in_intron	4663073	4663073	-	asmbl_45367	none	blat.proc3829889.chain_1995	1	STRG.5915.1,STRG.5915.2	2
scaffold_2	retained_intron	9790090	9790374	+	asmbl_24722,asmbl_24724	none	blat.proc3829871.chain_2216,blat.proc3829871.chain_2220	2	STRG.2185.1,blat.proc3829871.chain_2217,blat.proc3829871.chain_2219,blat.proc3829871.chain_2221,blat.proc3829871.chain_2222	5
scaffold_20	alt_donor	11097516	11097517	+	asmbl_26165	none	STRG.23614.1,blat.proc3829883.chain_757	2	blat.proc3829883.chain_758	1
scaffold_12	alt_donor	12339623	12339624	+	asmbl_8958	none	STRG.15124.1	1	STRG.15124.2	1
scaffold_13	spliced_intron	8013555	8013678	+	asmbl_11073,asmbl_11075,asmbl_11077	none	STRG.16066.1,STRG.16066.2,blat.proc3829879.chain_761,blat.proc3829879.chain_765	4	blat.proc3829879.chain_762	1
scaffold_6	retained_intron	2908831	2908974	+	asmbl_46734	none	STRG.7289.2	1	blat.proc3829873.chain_3369,blat.proc3829873.chain_3373	2
scaffold_27	alt_acceptor	1044478	1044479	+	asmbl_35946	none	STRG.28585.1	1	STRG.28585.2	1
scaffold_11	alternate_exon	4723618	4723780	+	asmbl_5468	none	STRG.13548.2	1	STRG.13548.1	1
scaffold_21	alternate_exon	5777671	5777823	-	asmbl_27721	none	blat.proc3829899.chain_1198	1	STRG.24099.1,STRG.24099.2,STRG.24099.3,blat.proc3829899.chain_1196,blat.proc3829899.chain_1200	5
scaffold_22	alt_acceptor	9340091	9340092	-	asmbl_30303	none	STRG.25263.2	1	STRG.25263.3	1
scaffold_23	alt_donor	7001760	7001761	-	asmbl_31724	none	STRG.26005.2	1	STRG.26005.1,blat.proc3829899.chain_3112	2
scaffold_19	starts_in_intron	12957814	12957814	-	asmbl_21776,asmbl_21778	none	Trinity_GG_29572_c0_g1_i2,Trinity_GG_29572_c0_g1_i4,blat.proc3829897.chain_3293,blat.proc3829897.chain_3294	4	STRG.22600.1,Trinity_GG_29572_c0_g1_i6,Trinity_GG_29572_c0_g1_i7,blat.proc3829897.chain_3292,blat.proc3829897.chain_3295	5
scaffold_11	alternate_exon	4335884	4335988	-	asmbl_6576	none	STRG.13521.3	1	STRG.13521.2	1
scaffold_27	spliced_intron	2997816	2997932	+	asmbl_36122	none	blat.proc3829885.chain_1841	1	STRG.28767.4,blat.proc3829885.chain_1844,blat.proc3829885.chain_1847	3
scaffold_7	retained_exon	4501324	4501379	-	asmbl_49678,asmbl_49679	none	STRG.8813.1,Trinity_GG_22050_c0_g1_i4,blat.proc3829891.chain_1193	3	STRG.8813.2,blat.proc3829891.chain_1190,blat.proc3829891.chain_1192	3
scaffold_13	alt_acceptor	772976	772977	-	asmbl_9336	none	STRG.15447.2	1	STRG.15447.1,blat.proc3829895.chain_183	2
scaffold_26	alt_donor	7519030	7519031	+	asmbl_35647	none	STRG.28368.1,blat.proc3829885.chain_1377	2	STRG.28368.2	1
scaffold_21	spliced_intron	2654905	2655051	-	asmbl_27509,asmbl_27511,asmbl_27512,asmbl_27515,asmbl_27516	none	STRG.23889.1,STRG.23889.2,STRG.23889.4,Trinity_GG_30293_c0_g1_i10,Trinity_GG_30293_c0_g1_i6,blat.proc3829899.chain_908,blat.proc3829899.chain_910,blat.proc3829899.chain_914,blat.proc3829899.chain_915	9	STRG.23889.3,Trinity_GG_30293_c0_g1_i8,blat.proc3829899.chain_909,blat.proc3829899.chain_913	4
scaffold_8	spliced_intron	8970965	8971067	-	asmbl_52976	none	STRG.10140.2,blat.proc3829891.chain_2309	2	STRG.10140.1,blat.proc3829891.chain_2311,blat.proc3829891.chain_2312	3
scaffold_17	alt_donor	2433188	2433189	+	asmbl_17782,asmbl_17783	none	STRG.20019.3,STRG.20019.4	2	STRG.20019.1,STRG.20019.2,Trinity_GG_10968_c0_g1_i2,Trinity_GG_10968_c0_g1_i4,blat.proc3829881.chain_846,blat.proc3829881.chain_848	6
scaffold_13	alt_donor	5948410	5948411	-	asmbl_9718,asmbl_9719	none	STRG.15896.3,STRG.15896.4	2	STRG.15896.1,STRG.15896.2,blat.proc3829895.chain_637,blat.proc3829895.chain_638	4
scaffold_26	retained_intron	4441929	4442021	+	asmbl_35428	none	STRG.28132.2,Trinity_GG_15511_c0_g1_i1,blat.proc3829885.chain_1078	3	STRG.28132.1,blat.proc3829885.chain_1079,blat.proc3829885.chain_1080	3
scaffold_11	retained_exon	13092870	13094015	+	asmbl_6008	none	STRG.14176.4	1	STRG.14176.1,STRG.14176.3,blat.proc3829877.chain_2671,blat.proc3829877.chain_2672,blat.proc3829877.chain_2674,blat.proc3829877.chain_2678	6
scaffold_1	retained_intron	1042580	1042741	+	asmbl_1448	none	STRG.62.1,Trinity_GG_5_c0_g1_i4,Trinity_GG_5_c0_g1_i6,blat.proc3829871.chain_9	4	STRG.62.4	1
scaffold_17	alt_acceptor	7832634	7832635	-	asmbl_19099	none	STRG.20396.2,blat.proc3829897.chain_1364	2	STRG.20396.1,blat.proc3829897.chain_1363	2
scaffold_15	retained_intron	4964468	4964665	+	asmbl_14124	none	STRG.18193.4	1	STRG.18193.1,Trinity_GG_9948_c0_g1_i1,Trinity_GG_9948_c0_g1_i3,blat.proc3829879.chain_2760,blat.proc3829879.chain_2761,blat.proc3829879.chain_2762,blat.proc3829879.chain_2764	7
scaffold_20	spliced_intron	10986547	10986918	+	asmbl_26160	none	STRG.23608.3	1	STRG.23608.2,Trinity_GG_13068_c0_g1_i3,blat.proc3829883.chain_749	3
scaffold_5	alt_donor	18222688	18222689	+	asmbl_44876,asmbl_44878,asmbl_44879	none	STRG.6950.1,STRG.6950.2,STRG.6950.5,blat.proc3829873.chain_3089	4	STRG.6950.3,STRG.6950.4,blat.proc3829873.chain_3088	3
scaffold_8	spliced_intron	9112712	9112870	-	asmbl_52993,asmbl_52994,asmbl_52996	none	STRG.10159.1,STRG.10159.2,blat.proc3829891.chain_2331,blat.proc3829891.chain_2332	4	blat.proc3829891.chain_2333	1
scaffold_19	alt_acceptor	2922395	2922396	-	asmbl_21279	none	STRG.21968.3	1	STRG.21968.2	1
scaffold_7	starts_in_intron	13016120	13016120	-	asmbl_50094	none	STRG.9408.2	1	STRG.9408.1	1
scaffold_12	skipped_exon	2921802	2922708	-	asmbl_7467	none	STRG.14515.5	1	STRG.14515.1,blat.proc3829893.chain_2936	2
scaffold_2	starts_in_intron	14550889	14550889	+	asmbl_24988	none	blat.proc3829871.chain_2567	1	STRG.2454.1,STRG.2454.2	2
scaffold_3	starts_in_intron	1767143	1767143	+	asmbl_39835,asmbl_39836	none	STRG.2990.3,Trinity_GG_1694_c0_g1_i5	2	STRG.2990.1,STRG.2990.2	2
scaffold_13	retained_exon	6885661	6885747	+	asmbl_10979,asmbl_10980	none	STRG.15964.1,STRG.15964.2,blat.proc3829879.chain_655,blat.proc3829879.chain_657	4	STRG.15964.3,blat.proc3829879.chain_656	2
scaffold_15	alt_acceptor	12114568	12114569	+	asmbl_14481	none	STRG.18659.2	1	STRG.18659.1,blat.proc3829879.chain_3247,blat.proc3829879.chain_3249	3
scaffold_6	alternate_exon	877833	878698	+	asmbl_46636	none	STRG.7151.1	1	STRG.7151.2	1
scaffold_20	ends_in_intron	240587	240587	-	asmbl_26407	none	blat.proc3829897.chain_3515	1	STRG.22700.2,STRG.22700.3	2
scaffold_28	alt_donor	3839585	3839586	+	asmbl_38186,asmbl_38187	none	STRG.29557.1,blat.proc3829885.chain_2697,blat.proc3829885.chain_2700	3	blat.proc3829885.chain_2698	1
scaffold_4	starts_in_intron	6303583	6303583	+	asmbl_42726	none	Trinity_GG_2497_c0_g1_i2	1	STRG.4502.1,Trinity_GG_2497_c0_g1_i1,Trinity_GG_2497_c0_g1_i6,Trinity_GG_2497_c0_g1_i8,Trinity_GG_2497_c0_g1_i9,blat.proc3829873.chain_863,blat.proc3829873.chain_865,blat.proc3829873.chain_866,blat.proc3829873.chain_867,blat.proc3829873.chain_868,blat.proc3829873.chain_870,blat.proc3829873.chain_871	12
scaffold_4	starts_in_intron	3279117	3279117	+	asmbl_42495	none	Trinity_GG_2364_c0_g1_i2,blat.proc3829873.chain_600	2	STRG.4254.1,Trinity_GG_2364_c0_g1_i1,Trinity_GG_2364_c0_g1_i3,blat.proc3829873.chain_599,blat.proc3829873.chain_601	5
scaffold_4	skipped_exon	17580414	17580979	+	asmbl_43402	none	STRG.5347.2	1	STRG.5347.1,STRG.5347.3	2
scaffold_20	retained_exon	10132650	10132661	+	asmbl_26090	none	blat.proc3829883.chain_650	1	STRG.23543.2	1
scaffold_25	spliced_intron	9503273	9503414	-	asmbl_34474,asmbl_34476	none	STRG.27747.1,blat.proc3829901.chain_1008,blat.proc3829901.chain_1009	3	Trinity_GG_32541_c0_g1_i3,blat.proc3829901.chain_1006	2
scaffold_8	alt_acceptor	1207493	1207494	-	asmbl_52692	none	STRG.9740.3	1	STRG.9740.1	1
scaffold_27	starts_in_intron	3058845	3058845	+	asmbl_36141	none	blat.proc3829885.chain_1854	1	STRG.28771.1,STRG.28771.2,blat.proc3829885.chain_1851,blat.proc3829885.chain_1852	4
scaffold_4	skipped_exon	17128737	17129758	-	asmbl_42009	none	STRG.5313.2,Trinity_GG_19982_c0_g1_i3	2	STRG.5313.1,blat.proc3829889.chain_1385	2
scaffold_11	alt_donor	172196	172197	+	asmbl_5217	none	STRG.13231.5	1	STRG.13231.1,STRG.13231.2,STRG.13231.3,STRG.13231.4,blat.proc3829877.chain_1757	5
scaffold_15	ends_in_intron	13981187	13981187	-	asmbl_15711	none	Trinity_GG_27579_c0_g1_i2,blat.proc3829895.chain_3571	2	STRG.18822.2,blat.proc3829895.chain_3570	2
scaffold_4	ends_in_intron	1916940	1916940	+	asmbl_42467	none	blat.proc3829873.chain_560	1	STRG.4203.1,blat.proc3829873.chain_561	2
scaffold_10	alt_acceptor	1621496	1621497	+	asmbl_4232	none	STRG.12018.3,Trinity_GG_6672_c1_g1_i1,blat.proc3829877.chain_699	3	STRG.12018.1,STRG.12018.2,STRG.12018.4,Trinity_GG_6672_c1_g1_i2,Trinity_GG_6672_c1_g1_i3,blat.proc3829877.chain_697,blat.proc3829877.chain_698	7
scaffold_14	alternate_exon	2301464	2303059	+	asmbl_11828	none	STRG.16832.2,Trinity_GG_9224_c5_g1_i1,Trinity_GG_9224_c7_g1_i1,blat.proc3829879.chain_1492,blat.proc3829879.chain_1494	5	STRG.16832.1,blat.proc3829879.chain_1488	2
scaffold_19	starts_in_intron	1106425	1106425	-	asmbl_21228,asmbl_21235	none	Trinity_GG_29212_c0_g1_i3,blat.proc3829897.chain_2643,blat.proc3829897.chain_2644	3	STRG.21887.1,STRG.21887.4,Trinity_GG_29212_c0_g2_i1,blat.proc3829897.chain_2647	4
scaffold_11	alt_acceptor	6608394	6608395	-	asmbl_6703	none	STRG.13692.1,blat.proc3829893.chain_2146	2	STRG.13692.2	1
scaffold_13	retained_intron	6985069	6985291	+	asmbl_10989	none	STRG.15999.4	1	STRG.15999.3	1
scaffold_13	ends_in_intron	7249329	7249329	+	asmbl_11016	none	Trinity_GG_8793_c0_g1_i2	1	STRG.16003.1,Trinity_GG_8793_c0_g1_i1,blat.proc3829879.chain_716	3
scaffold_21	retained_exon	3824283	3824342	-	asmbl_27574,asmbl_27579	none	STRG.23959.3,blat.proc3829899.chain_1044,blat.proc3829899.chain_1046	3	STRG.23959.1,blat.proc3829899.chain_1042,blat.proc3829899.chain_1043	3
scaffold_21	alt_acceptor	4600237	4600238	+	asmbl_28547	none	STRG.23996.2	1	STRG.23996.3,blat.proc3829883.chain_1115	2
scaffold_1	alt_acceptor	5990020	5990021	+	asmbl_1802	none	STRG.398.1,blat.proc3829871.chain_462	2	STRG.398.2	1
scaffold_7	ends_in_intron	4874182	4874182	+	asmbl_50633	none	blat.proc3829875.chain_1236	1	Trinity_GG_4853_c0_g1_i3,blat.proc3829875.chain_1235	2
scaffold_16	spliced_intron	744159	744375	-	asmbl_16066,asmbl_16070	none	STRG.19044.1,blat.proc3829897.chain_10,blat.proc3829897.chain_13	3	blat.proc3829897.chain_14,blat.proc3829897.chain_9	2
scaffold_1	ends_in_intron	1610750	1610750	+	asmbl_1498,asmbl_1500	none	STRG.102.1,blat.proc3829871.chain_143,blat.proc3829871.chain_146	3	STRG.102.2,STRG.102.4,Trinity_GG_85_c0_g1_i1,Trinity_GG_85_c0_g1_i3,Trinity_GG_85_c0_g1_i5,blat.proc3829871.chain_144,blat.proc3829871.chain_145,blat.proc3829871.chain_148	8
scaffold_2	alt_donor	16403257	16403258	+	asmbl_25173	none	blat.proc3829871.chain_2793	1	STRG.2580.1,blat.proc3829871.chain_2790,blat.proc3829871.chain_2791	3
scaffold_28	retained_exon	3321404	3321493	+	asmbl_38167	none	STRG.29527.2	1	STRG.29527.1,blat.proc3829885.chain_2658	2
scaffold_3	starts_in_intron	6649277	6649277	+	asmbl_40058	none	blat.proc3829871.chain_3445	1	STRG.3282.1,STRG.3282.2,blat.proc3829871.chain_3444	3
scaffold_8	alt_donor	11167627	11167628	-	asmbl_53132	none	STRG.10321.1,blat.proc3829891.chain_2465	2	STRG.10321.2,blat.proc3829891.chain_2466	2
scaffold_15	starts_in_intron	14327916	14327916	-	asmbl_15733	none	Trinity_GG_27599_c0_g1_i10,blat.proc3829895.chain_3607	2	STRG.18855.3,blat.proc3829895.chain_3603	2
scaffold_2	alternate_exon	14231966	14232018	-	asmbl_23605	none	STRG.2418.2	1	STRG.2418.1	1
scaffold_7	retained_intron	2523136	2523439	-	asmbl_49574	none	STRG.8680.1,Trinity_GG_21969_c0_g1_i2,blat.proc3829891.chain_1047	3	STRG.8680.2,Trinity_GG_21969_c0_g1_i1,blat.proc3829891.chain_1046	3
scaffold_26	alt_acceptor	9843298	9843299	+	asmbl_35804,asmbl_35809	none	STRG.28526.3,blat.proc3829885.chain_1560	2	STRG.28526.1,STRG.28526.5,blat.proc3829885.chain_1556,blat.proc3829885.chain_1557,blat.proc3829885.chain_1558,blat.proc3829885.chain_1559,blat.proc3829885.chain_1561,blat.proc3829885.chain_1562,blat.proc3829885.chain_1564,blat.proc3829885.chain_1567	10
scaffold_14	retained_intron	6938531	6938657	+	asmbl_12098	none	blat.proc3829879.chain_1867	1	STRG.17121.1,blat.proc3829879.chain_1865	2
scaffold_10	starts_in_intron	1451239	1451239	-	asmbl_2974	none	blat.proc3829893.chain_442	1	STRG.12010.1,blat.proc3829893.chain_441	2
scaffold_15	spliced_intron	9004560	9004735	-	asmbl_15385	none	STRG.18434.3,blat.proc3829895.chain_3125	2	STRG.18434.1,blat.proc3829895.chain_3126	2
scaffold_20	spliced_intron	11744401	11744588	-	asmbl_27119	none	STRG.23678.1,blat.proc3829899.chain_601	2	STRG.23678.2,Trinity_GG_30161_c0_g1_i2,blat.proc3829899.chain_600	3
scaffold_8	skipped_exon	9867463	9868250	+	asmbl_52100,asmbl_52101,asmbl_52104,asmbl_52109	none	STRG.10225.2,STRG.10225.4,blat.proc3829875.chain_2691,blat.proc3829875.chain_2697	4	blat.proc3829875.chain_2692,blat.proc3829875.chain_2693,blat.proc3829875.chain_2694,blat.proc3829875.chain_2695	4
scaffold_15	alternate_exon	1961215	1961302	+	asmbl_13983	none	STRG.17971.1	1	STRG.17971.3	1
scaffold_17	spliced_intron	5137331	5138143	-	asmbl_18961	none	STRG.20232.2,blat.proc3829897.chain_1206	2	STRG.20232.4,blat.proc3829897.chain_1208	2
scaffold_3	starts_in_intron	18144066	18144066	-	asmbl_39539,asmbl_39541	none	STRG.4027.1,blat.proc3829889.chain_99	2	STRG.4027.2,STRG.4027.3,blat.proc3829889.chain_98	3
scaffold_11	retained_intron	262237	262334	-	asmbl_6364,asmbl_6365	none	blat.proc3829893.chain_1718,blat.proc3829893.chain_1719	2	STRG.13257.1,blat.proc3829893.chain_1720	2
scaffold_8	retained_intron	7446652	7446732	-	asmbl_52898	none	blat.proc3829891.chain_2177	1	STRG.10064.1,blat.proc3829891.chain_2174,blat.proc3829891.chain_2176	3
scaffold_18	alt_donor	12935336	12935337	+	asmbl_21002	none	STRG.21731.1	1	STRG.21731.2,blat.proc3829897.chain_2535	2
scaffold_5	retained_exon	14261869	14262430	+	asmbl_44582	none	blat.proc3829873.chain_2765	1	STRG.6629.1,STRG.6629.2,blat.proc3829873.chain_2764,blat.proc3829873.chain_2767	4
scaffold_20	alt_acceptor	9540951	9540952	-	asmbl_26969	none	STRG.23478.2,Trinity_GG_30105_c0_g1_i2,blat.proc3829899.chain_502	3	STRG.23478.1,Trinity_GG_30105_c0_g1_i1,blat.proc3829899.chain_501	3
scaffold_27	alt_donor	159056	159057	-	asmbl_36602	none	STRG.28533.1,blat.proc3829901.chain_1699	2	STRG.28533.2,STRG.28533.3	2
scaffold_10	starts_in_intron	13915368	13915368	+	asmbl_4900	none	STRG.12970.3,Trinity_GG_7152_c1_g1_i1,blat.proc3829877.chain_1552	3	STRG.12970.1,STRG.12970.2,blat.proc3829877.chain_1551	3
scaffold_12	retained_intron	14184773	14185070	-	asmbl_8127	none	blat.proc3829893.chain_3687	1	STRG.15242.1,STRG.15242.2,blat.proc3829893.chain_3686	3
scaffold_26	alt_acceptor	4470248	4470249	+	asmbl_35439	none	STRG.28139.1,blat.proc3829885.chain_1127	2	STRG.28139.2	1
scaffold_1	alternate_exon	12166139	12170872	+	asmbl_2167,asmbl_2170	none	blat.proc3829871.chain_919,blat.proc3829871.chain_920	2	STRG.845.1	1
scaffold_9	retained_exon	15589170	15589184	+	asmbl_54557,asmbl_54558	none	blat.proc3829877.chain_498,blat.proc3829877.chain_499	2	STRG.11739.1,blat.proc3829877.chain_496,blat.proc3829877.chain_497	3
scaffold_8	alt_donor	16576572	16576573	-	asmbl_53438,asmbl_53440	none	STRG.10623.1,blat.proc3829891.chain_2781,blat.proc3829891.chain_2783	3	STRG.10623.2,blat.proc3829891.chain_2780	2
scaffold_2	alternate_exon	8855524	8855720	+	asmbl_24680	none	STRG.2138.2,Trinity_GG_1207_c0_g1_i2,blat.proc3829871.chain_2245	3	STRG.2138.3	1
scaffold_24	alt_acceptor	7100128	7100129	+	asmbl_32374	none	STRG.26741.2	1	STRG.26741.1	1
scaffold_12	alternate_exon	4103040	4103282	+	asmbl_8542	none	STRG.14584.3	1	STRG.14584.1	1
scaffold_7	alt_acceptor	2149924	2149925	+	asmbl_50505	none	STRG.8650.2,Trinity_GG_4750_c0_g1_i1	2	STRG.8650.1,Trinity_GG_4750_c0_g1_i2	2
scaffold_26	retained_intron	9772970	9773112	+	asmbl_35778,asmbl_35780,asmbl_35781,asmbl_35783,asmbl_35784,asmbl_35785,asmbl_35786	none	STRG.28501.10,STRG.28501.3,STRG.28501.4,STRG.28501.9,blat.proc3829885.chain_1432,blat.proc3829885.chain_1433,blat.proc3829885.chain_1434,blat.proc3829885.chain_1435	8	STRG.28501.1,STRG.28501.2,STRG.28501.5,STRG.28501.6,blat.proc3829885.chain_1436,blat.proc3829885.chain_1437	6
scaffold_5	skipped_exon	4628574	4630113	-	asmbl_45352	none	STRG.5909.2,blat.proc3829889.chain_1978	2	STRG.5909.1,blat.proc3829889.chain_1980	2
scaffold_7	skipped_exon	17609629	17611627	+	asmbl_51368	none	STRG.9601.1,blat.proc3829875.chain_2006	2	STRG.9601.2	1
scaffold_12	alternate_exon	16437545	16437601	+	asmbl_9147	none	STRG.15389.1	1	STRG.15389.2,blat.proc3829879.chain_58	2
scaffold_10	alternate_exon	7836618	7839806	+	asmbl_4585	none	STRG.12567.1	1	STRG.12567.2	1
scaffold_7	retained_intron	18127677	18127784	+	asmbl_51401	none	blat.proc3829875.chain_2071	1	blat.proc3829875.chain_2070	1
scaffold_6	starts_in_intron	14014817	14014817	-	asmbl_48916	none	blat.proc3829891.chain_480	1	STRG.8152.1,blat.proc3829891.chain_481	2
scaffold_2	spliced_intron	16280381	16280649	+	asmbl_25127,asmbl_25128,asmbl_25130,asmbl_25132,asmbl_25133,asmbl_25135,asmbl_25136	none	STRG.2564.1,STRG.2564.3,Trinity_GG_1464_c0_g1_i8,blat.proc3829871.chain_2777,blat.proc3829871.chain_2778,blat.proc3829871.chain_2781,blat.proc3829871.chain_2782,blat.proc3829871.chain_2783,blat.proc3829871.chain_2785,blat.proc3829871.chain_2786	10	blat.proc3829871.chain_2780,blat.proc3829871.chain_2784	2
scaffold_1	spliced_intron	849299	849972	+	asmbl_1415	none	STRG.41.1,Trinity_GG_29_c0_g1_i2,blat.proc3829871.chain_52	3	Trinity_GG_29_c0_g1_i4,blat.proc3829871.chain_53	2
scaffold_17	starts_in_intron	2537067	2537067	-	asmbl_18800	none	STRG.20035.2,blat.proc3829897.chain_985	2	STRG.20035.1,STRG.20035.3,blat.proc3829897.chain_984,blat.proc3829897.chain_987	4
scaffold_17	alternate_exon	14351181	14352837	-	asmbl_19473	none	STRG.20903.1,blat.proc3829897.chain_1803	2	blat.proc3829897.chain_1804	1
scaffold_22	spliced_intron	3782822	3783053	-	asmbl_29948	none	blat.proc3829899.chain_1896	1	blat.proc3829899.chain_1895	1
scaffold_16	ends_in_intron	8641411	8641411	+	asmbl_17229	none	blat.proc3829881.chain_365	1	STRG.19479.1,STRG.19479.2,STRG.19479.3,blat.proc3829881.chain_361,blat.proc3829881.chain_362	5
scaffold_6	alt_acceptor	12920078	12920079	+	asmbl_47387	none	STRG.8044.1,blat.proc3829875.chain_444	2	STRG.8044.2	1
scaffold_10	alt_donor	6867785	6867786	-	asmbl_3424,asmbl_3426,asmbl_3428	none	STRG.12505.1,blat.proc3829893.chain_994,blat.proc3829893.chain_997,blat.proc3829893.chain_999	4	blat.proc3829893.chain_991,blat.proc3829893.chain_998	2
scaffold_15	retained_intron	15502183	15502253	+	asmbl_14752,asmbl_14753,asmbl_14756,asmbl_14757	none	STRG.18940.2,Trinity_GG_10382_c0_g1_i3,Trinity_GG_10382_c0_g1_i6,blat.proc3829879.chain_3532,blat.proc3829879.chain_3536,blat.proc3829879.chain_3537	6	STRG.18940.1,Trinity_GG_10382_c0_g1_i1,Trinity_GG_10382_c0_g1_i2,Trinity_GG_10382_c0_g1_i5,blat.proc3829879.chain_3533,blat.proc3829879.chain_3534,blat.proc3829879.chain_3535	7
scaffold_2	retained_intron	19299385	19299486	-	asmbl_23875,asmbl_23879	none	STRG.2796.1,Trinity_GG_18530_c0_g1_i7,blat.proc3829887.chain_2572,blat.proc3829887.chain_2573,blat.proc3829887.chain_2575	5	STRG.2796.2,blat.proc3829887.chain_2570	2
scaffold_20	retained_exon	1616678	1616761	-	asmbl_26518	none	STRG.22881.3	1	STRG.22881.2,STRG.22881.4	2
scaffold_5	retained_intron	15764229	15764723	+	asmbl_44684	none	blat.proc3829873.chain_2882	1	STRG.6763.1,blat.proc3829873.chain_2874,blat.proc3829873.chain_2875,blat.proc3829873.chain_2877,blat.proc3829873.chain_2880	5
scaffold_28	spliced_intron	294106	294231	+	asmbl_37963,asmbl_37964	none	STRG.29243.2,blat.proc3829885.chain_2398	2	STRG.29243.3,blat.proc3829885.chain_2401	2
scaffold_17	retained_intron	12090439	12090468	+	asmbl_18380	none	STRG.20727.3	1	STRG.20727.2	1
scaffold_6	retained_intron	19075642	19076743	+	asmbl_47815,asmbl_47816,asmbl_47817	none	STRG.8572.3,STRG.8572.4,Trinity_GG_4663_c0_g1_i2,Trinity_GG_4663_c0_g1_i6,blat.proc3829875.chain_865,blat.proc3829875.chain_868	6	STRG.8572.1,STRG.8572.2,Trinity_GG_4663_c0_g1_i3,Trinity_GG_4663_c0_g1_i5,blat.proc3829875.chain_866,blat.proc3829875.chain_867	6
scaffold_19	retained_intron	3668736	3668829	-	asmbl_21325,asmbl_21330	none	Trinity_GG_29269_c0_g1_i7,blat.proc3829897.chain_2740,blat.proc3829897.chain_2742	3	STRG.22034.1,STRG.22034.2,STRG.22034.3,STRG.22034.4,Trinity_GG_29269_c0_g1_i1,Trinity_GG_29269_c0_g1_i2,Trinity_GG_29269_c0_g1_i5,Trinity_GG_29269_c0_g1_i6,blat.proc3829897.chain_2739,blat.proc3829897.chain_2743,blat.proc3829897.chain_2744,blat.proc3829897.chain_2745	12
scaffold_10	spliced_intron	6672054	6672407	-	asmbl_3403,asmbl_3406	none	STRG.12494.6,blat.proc3829893.chain_1027	2	blat.proc3829893.chain_1029,blat.proc3829893.chain_1032	2
scaffold_2	skipped_exon	18947872	18950334	+	asmbl_25290	none	STRG.2768.3	1	STRG.2768.1,STRG.2768.2,Trinity_GG_1522_c0_g1_i1,Trinity_GG_1522_c0_g1_i11,Trinity_GG_1522_c0_g1_i2,Trinity_GG_1522_c0_g1_i7	6
scaffold_24	starts_in_intron	6168285	6168285	-	asmbl_32924	none	STRG.26658.1,blat.proc3829899.chain_3657	2	STRG.26658.2,STRG.26658.3,blat.proc3829899.chain_3658,blat.proc3829899.chain_3659	4
scaffold_9	starts_in_intron	9568360	9568360	-	asmbl_55165	none	blat.proc3829891.chain_3456	1	STRG.11306.1,blat.proc3829891.chain_3455	2
scaffold_19	starts_in_intron	11483248	11483248	-	asmbl_21622	none	blat.proc3829897.chain_3191	1	STRG.22477.3,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184,blat.proc3829897.chain_3187,blat.proc3829897.chain_3188,blat.proc3829897.chain_3192	6
scaffold_11	alt_acceptor	11931048	11931049	-	asmbl_7020	none	STRG.14160.1	1	STRG.14160.2	1
scaffold_6	starts_in_intron	5681907	5681907	+	asmbl_46914	none	Trinity_GG_4070_c0_g1_i3,blat.proc3829873.chain_3555	2	STRG.7522.1,Trinity_GG_4070_c0_g1_i1,blat.proc3829873.chain_3554	3
scaffold_8	alt_acceptor	8877856	8877857	+	asmbl_52024	none	STRG.10130.2,blat.proc3829875.chain_2644	2	STRG.10130.1,blat.proc3829875.chain_2643	2
scaffold_26	alt_donor	4455561	4455562	+	asmbl_35434	none	STRG.28147.2,blat.proc3829885.chain_1136	2	STRG.28147.1,blat.proc3829885.chain_1137	2
scaffold_3	starts_in_intron	8211932	8211932	-	asmbl_38981	none	STRG.3395.1,blat.proc3829887.chain_3168	2	STRG.3395.2,STRG.3395.3,blat.proc3829887.chain_3166	3
scaffold_21	retained_exon	8278464	8278505	+	asmbl_28819	none	STRG.24353.1	1	blat.proc3829883.chain_1472	1
scaffold_9	alternate_exon	18389787	18389820	+	asmbl_54637	none	STRG.11879.2,blat.proc3829877.chain_596	2	STRG.11879.1,STRG.11879.3	2
scaffold_6	alt_acceptor	594243	594244	-	asmbl_47990	none	STRG.7113.2	1	STRG.7113.1,blat.proc3829889.chain_3097	2
scaffold_28	ends_in_intron	3154273	3154273	+	asmbl_38140	none	STRG.29505.2,blat.proc3829885.chain_2619	2	STRG.29505.1,blat.proc3829885.chain_2620	2
scaffold_2	retained_intron	17234631	17234740	-	asmbl_23730	none	STRG.2619.1,Trinity_GG_18462_c1_g1_i1,blat.proc3829887.chain_2466	3	STRG.2619.2	1
scaffold_6	spliced_intron	298817	299072	+	asmbl_46600,asmbl_46603	none	STRG.7082.1,STRG.7082.4,Trinity_GG_3916_c0_g1_i2,blat.proc3829873.chain_3251	4	STRG.7082.3,Trinity_GG_3916_c0_g1_i3,blat.proc3829873.chain_3252	3
scaffold_2	retained_intron	15271520	15271659	+	asmbl_25033,asmbl_25036	none	blat.proc3829871.chain_2528,blat.proc3829871.chain_2535	2	STRG.2481.1,blat.proc3829871.chain_2524,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2536,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	10
scaffold_16	alt_donor	4638507	4638508	+	asmbl_16984	none	STRG.19238.1,blat.proc3829881.chain_55	2	STRG.19238.2	1
scaffold_23	retained_intron	10213636	10214194	+	asmbl_31132,asmbl_31135	none	STRG.26209.2,STRG.26209.3,blat.proc3829883.chain_3155	3	STRG.26209.1,blat.proc3829883.chain_3158	2
scaffold_7	alt_donor	8297093	8297094	-	asmbl_49808	none	STRG.9056.1,blat.proc3829891.chain_1235	2	STRG.9056.2,blat.proc3829891.chain_1238	2
scaffold_13	skipped_exon	9237133	9239582	+	asmbl_11166	none	STRG.16167.2	1	STRG.16167.1,blat.proc3829879.chain_802,blat.proc3829879.chain_803	3
scaffold_18	alternate_exon	2004770	2014079	-	asmbl_19723	none	STRG.21099.2,STRG.21099.3,Trinity_GG_28829_c2_g1_i1,blat.proc3829897.chain_1985,blat.proc3829897.chain_1988	5	STRG.21099.1,blat.proc3829897.chain_1987	2
scaffold_24	retained_exon	9953522	9953644	-	asmbl_33152,asmbl_33153	none	STRG.26947.3,STRG.26947.4	2	STRG.26947.1,STRG.26947.8,blat.proc3829901.chain_245,blat.proc3829901.chain_248,blat.proc3829901.chain_249,blat.proc3829901.chain_250	6
scaffold_13	alternate_exon	5506942	5507049	+	asmbl_10838	none	STRG.15830.2,Trinity_GG_8666_c0_g1_i2,blat.proc3829879.chain_460	3	STRG.15830.4,Trinity_GG_8666_c0_g1_i3,blat.proc3829879.chain_462	3
scaffold_26	spliced_intron	9774454	9775593	+	asmbl_35781,asmbl_35786,asmbl_35788,asmbl_35790	none	STRG.28501.1,STRG.28501.10,STRG.28501.3,STRG.28501.5	4	STRG.28501.2,STRG.28501.4,STRG.28501.6,STRG.28501.9,Trinity_GG_15770_c0_g1_i1,blat.proc3829885.chain_1532,blat.proc3829885.chain_1533,blat.proc3829885.chain_1535,blat.proc3829885.chain_1538	9
scaffold_4	retained_intron	17580692	17580979	+	asmbl_43403,asmbl_43405	none	STRG.5347.4,STRG.5347.5	2	STRG.5347.1,STRG.5347.3	2
scaffold_13	spliced_intron	3092016	3092119	-	asmbl_9474	none	STRG.15601.2	1	STRG.15601.1	1
scaffold_1	spliced_intron	6283222	6283603	-	asmbl_340,asmbl_343,asmbl_348,asmbl_350,asmbl_351	none	STRG.425.1,STRG.425.3,STRG.425.4,blat.proc3829887.chain_328,blat.proc3829887.chain_334	5	STRG.425.5,blat.proc3829887.chain_325	2
scaffold_19	spliced_intron	11460464	11460646	-	asmbl_21595,asmbl_21597,asmbl_21599	none	STRG.22464.1,blat.proc3829897.chain_3112,blat.proc3829897.chain_3113,blat.proc3829897.chain_3116	4	blat.proc3829897.chain_3111,blat.proc3829897.chain_3115	2
scaffold_19	retained_intron	13140882	13141025	+	asmbl_22660	none	STRG.22620.1,blat.proc3829881.chain_3587	2	STRG.22620.3	1
scaffold_17	spliced_intron	6684218	6684381	+	asmbl_17994	none	STRG.20309.1,blat.proc3829881.chain_1059	2	STRG.20309.2,blat.proc3829881.chain_1058	2
scaffold_5	starts_in_intron	2670502	2670502	-	asmbl_45279	none	STRG.5790.2,blat.proc3829889.chain_1871	2	STRG.5790.1,STRG.5790.3,blat.proc3829889.chain_1872,blat.proc3829889.chain_1875	4
scaffold_4	alt_acceptor	3884533	3884534	-	asmbl_41201,asmbl_41203	none	STRG.4295.2,STRG.4295.3,blat.proc3829889.chain_421	3	STRG.4295.1,STRG.4295.4,blat.proc3829889.chain_422	3
scaffold_26	alternate_exon	2962587	2962975	-	asmbl_34737	none	Trinity_GG_32695_c1_g1_i4,blat.proc3829901.chain_1231	2	STRG.27973.2,STRG.27973.4,blat.proc3829901.chain_1233	3
scaffold_13	starts_in_intron	3811077	3811077	-	asmbl_9547	none	blat.proc3829895.chain_408	1	STRG.15699.1,blat.proc3829895.chain_409,blat.proc3829895.chain_410,blat.proc3829895.chain_412	4
scaffold_22	ends_in_intron	4586699	4586699	-	asmbl_30035,asmbl_30038	none	STRG.24877.2,blat.proc3829899.chain_1911,blat.proc3829899.chain_1913	3	STRG.24877.1,blat.proc3829899.chain_1912	2
scaffold_27	spliced_intron	2997750	2997932	+	asmbl_36119,asmbl_36121	none	STRG.28767.5,blat.proc3829885.chain_1839	2	STRG.28767.4,blat.proc3829885.chain_1844,blat.proc3829885.chain_1847	3
scaffold_10	skipped_exon	11970189	11971545	+	asmbl_4783	none	STRG.12831.3	1	STRG.12831.1,blat.proc3829877.chain_1321	2
scaffold_6	alternate_exon	10254120	10254174	-	asmbl_48616	none	STRG.7863.2	1	STRG.7863.1,blat.proc3829891.chain_128	2
scaffold_2	spliced_intron	8055440	8055585	-	asmbl_23324	none	STRG.2095.1,blat.proc3829887.chain_2008	2	STRG.2095.5,blat.proc3829887.chain_2007	2
scaffold_11	retained_intron	9185416	9185879	-	asmbl_6904	none	Trinity_GG_24785_c0_g2_i1,blat.proc3829893.chain_2346	2	STRG.13951.2,Trinity_GG_24785_c0_g1_i1,blat.proc3829893.chain_2344	3
scaffold_5	alt_acceptor	6927581	6927582	+	asmbl_44125	none	STRG.6098.2	1	STRG.6098.1,blat.proc3829873.chain_2170	2
scaffold_7	skipped_exon	4391931	4392703	+	asmbl_50613,asmbl_50614	none	Trinity_GG_4787_c0_g1_i1,Trinity_GG_4787_c0_g1_i2	2	blat.proc3829875.chain_1130,blat.proc3829875.chain_1131	2
scaffold_6	retained_intron	12937728	12937921	+	asmbl_47393	none	STRG.8046.2,blat.proc3829875.chain_457	2	STRG.8046.1,Trinity_GG_4418_c0_g1_i1,blat.proc3829875.chain_456	3
scaffold_19	alt_acceptor	8805816	8805817	+	asmbl_22360	none	STRG.22319.2	1	STRG.22319.1,STRG.22319.4,blat.proc3829881.chain_3246	3
scaffold_19	alt_acceptor	11780571	11780572	+	asmbl_22527	none	STRG.22492.1,blat.proc3829881.chain_3449	2	blat.proc3829881.chain_3448	1
scaffold_13	alternate_exon	5458017	5458344	+	asmbl_10831,asmbl_10834	none	STRG.15828.2,blat.proc3829879.chain_518,blat.proc3829879.chain_521	3	STRG.15828.1,blat.proc3829879.chain_519,blat.proc3829879.chain_520	3
scaffold_19	alternate_exon	11483615	11487947	-	asmbl_21614,asmbl_21619	none	STRG.22477.3,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184	3	blat.proc3829897.chain_3188	1
scaffold_10	retained_intron	10324675	10324702	-	asmbl_3628	none	STRG.12713.1	1	blat.proc3829893.chain_1220	1
scaffold_5	alt_donor	4687108	4687109	-	asmbl_45370,asmbl_45372,asmbl_45377,asmbl_45378,asmbl_45379,asmbl_45380,asmbl_45381,asmbl_45382	none	STRG.5919.1,STRG.5919.4,blat.proc3829889.chain_2026,blat.proc3829889.chain_2027,blat.proc3829889.chain_2029,blat.proc3829889.chain_2030,blat.proc3829889.chain_2032,blat.proc3829889.chain_2033,blat.proc3829889.chain_2035	9	STRG.5919.6,blat.proc3829889.chain_2028	2
scaffold_14	alternate_exon	1605185	1605281	-	asmbl_12882	none	Trinity_GG_26418_c0_g1_i1,blat.proc3829895.chain_1496	2	STRG.16790.1,STRG.16790.2,Trinity_GG_26418_c0_g1_i3,Trinity_GG_26418_c0_g1_i5,blat.proc3829895.chain_1495,blat.proc3829895.chain_1497	6
scaffold_1	retained_intron	15888475	15889037	+	asmbl_2436	none	STRG.1117.2,blat.proc3829871.chain_1169	2	STRG.1117.3	1
scaffold_14	alt_acceptor	561020	561021	+	asmbl_11733	none	STRG.16726.1,Trinity_GG_9210_c0_g1_i3,Trinity_GG_9210_c1_g1_i1,blat.proc3829879.chain_1447,blat.proc3829879.chain_1449	5	STRG.16726.2	1
scaffold_1	retained_exon	12449058	12450015	+	asmbl_2201,asmbl_2202,asmbl_2204	none	STRG.856.2,STRG.856.4,STRG.856.5,Trinity_GG_494_c0_g1_i1,Trinity_GG_494_c0_g1_i5,Trinity_GG_494_c0_g1_i8,blat.proc3829871.chain_883,blat.proc3829871.chain_884,blat.proc3829871.chain_888	9	STRG.856.3,Trinity_GG_494_c0_g1_i3,Trinity_GG_494_c0_g1_i6,blat.proc3829871.chain_882,blat.proc3829871.chain_887	5
scaffold_2	retained_intron	7241458	7241574	+	asmbl_24586,asmbl_24587,asmbl_24588	none	blat.proc3829871.chain_2165,blat.proc3829871.chain_2166,blat.proc3829871.chain_2168	3	blat.proc3829871.chain_2172	1
scaffold_20	spliced_intron	5553307	5553473	-	asmbl_26689,asmbl_26693	none	STRG.23165.2,blat.proc3829899.chain_204,blat.proc3829899.chain_205	3	STRG.23165.1,STRG.23165.3,blat.proc3829899.chain_203,blat.proc3829899.chain_206	4
scaffold_27	alt_donor	7230248	7230249	+	asmbl_36388	none	STRG.29062.2,blat.proc3829885.chain_2185	2	blat.proc3829885.chain_2186	1
scaffold_18	alt_acceptor	13653835	13653836	-	asmbl_20206,asmbl_20208	none	STRG.21788.1,blat.proc3829897.chain_2559,blat.proc3829897.chain_2560	3	STRG.21788.2	1
scaffold_15	spliced_intron	2565306	2565577	-	asmbl_15029,asmbl_15030	none	STRG.18037.2,STRG.18037.5,blat.proc3829895.chain_2773,blat.proc3829895.chain_2775	4	STRG.18037.1,STRG.18037.3,STRG.18037.4,blat.proc3829895.chain_2774	4
scaffold_6	spliced_intron	13573776	13573887	-	asmbl_48850,asmbl_48851,asmbl_48852,asmbl_48854	none	STRG.8093.2,STRG.8093.3,STRG.8093.4,Trinity_GG_21620_c1_g1_i1,blat.proc3829891.chain_414,blat.proc3829891.chain_416	6	Trinity_GG_21620_c1_g1_i2,blat.proc3829891.chain_417	2
scaffold_3	retained_exon	13700820	13700902	+	asmbl_40410	none	STRG.3712.2,blat.proc3829873.chain_130	2	STRG.3712.1,blat.proc3829873.chain_129	2
scaffold_15	starts_in_intron	4745518	4745518	+	asmbl_14108	none	Trinity_GG_9980_c1_g1_i1,blat.proc3829879.chain_2824	2	STRG.18174.1,blat.proc3829879.chain_2823	2
scaffold_5	skipped_exon	10170961	10171274	+	asmbl_44333	none	blat.proc3829873.chain_2378	1	STRG.6310.1,blat.proc3829873.chain_2380	2
scaffold_14	alt_donor	15693817	15693818	-	asmbl_13719	none	STRG.17796.3	1	STRG.17796.2,blat.proc3829895.chain_2522	2
scaffold_6	spliced_intron	13178612	13178919	-	asmbl_48830	none	STRG.8070.1,Trinity_GG_21601_c0_g2_i1,blat.proc3829891.chain_372,blat.proc3829891.chain_373	4	STRG.8070.2,Trinity_GG_21601_c0_g1_i2,blat.proc3829891.chain_371	3
scaffold_15	starts_in_intron	2443977	2443977	-	asmbl_15016	none	Trinity_GG_27121_c0_g1_i1,blat.proc3829895.chain_2707	2	STRG.18012.1	1
scaffold_2	spliced_intron	7924499	7924931	-	asmbl_23316,asmbl_23318,asmbl_23320	none	STRG.2092.1,STRG.2092.2,blat.proc3829887.chain_2033,blat.proc3829887.chain_2036	4	blat.proc3829887.chain_2034	1
scaffold_4	retained_intron	17472694	17472804	-	asmbl_42019	none	STRG.5334.1,Trinity_GG_19987_c0_g1_i1,blat.proc3829889.chain_1393	3	Trinity_GG_19987_c0_g1_i2,blat.proc3829889.chain_1392	2
scaffold_1	alt_acceptor	6920065	6920066	-	asmbl_413	none	STRG.485.1,blat.proc3829887.chain_395	2	blat.proc3829887.chain_393	1
scaffold_1	alt_acceptor	5619383	5619384	+	asmbl_1727	none	STRG.352.1	1	STRG.352.2,STRG.352.3	2
scaffold_2	alt_donor	8068225	8068226	-	asmbl_23333	none	STRG.2104.1	1	STRG.2104.2,Trinity_GG_18185_c0_g1_i1,blat.proc3829887.chain_2002	3
scaffold_27	retained_intron	2903073	2903179	-	asmbl_36823	none	STRG.28755.3,blat.proc3829901.chain_1933	2	STRG.28755.1,Trinity_GG_33104_c0_g1_i2,blat.proc3829901.chain_1932	3
scaffold_14	ends_in_intron	2122939	2122939	-	asmbl_12901	none	blat.proc3829895.chain_1530	1	Trinity_GG_26440_c0_g1_i9,blat.proc3829895.chain_1527	2
scaffold_11	alt_donor	1156579	1156580	+	asmbl_5284	none	Trinity_GG_7267_c0_g1_i5,blat.proc3829877.chain_1723	2	STRG.13301.1,Trinity_GG_7267_c0_g1_i2,Trinity_GG_7267_c0_g1_i7,blat.proc3829877.chain_1725,blat.proc3829877.chain_1726	5
scaffold_4	retained_intron	11986664	11986803	-	asmbl_41630	none	STRG.4852.1,Trinity_GG_19725_c0_g1_i2,blat.proc3829889.chain_924	3	Trinity_GG_19725_c0_g1_i1,blat.proc3829889.chain_925	2
scaffold_13	alt_donor	15519366	15519367	+	asmbl_11496	none	STRG.16582.2	1	STRG.16582.1	1
scaffold_8	spliced_intron	5433999	5434119	+	asmbl_51870,asmbl_51871	none	STRG.9965.1,STRG.9965.2,blat.proc3829875.chain_2414	3	blat.proc3829875.chain_2415,blat.proc3829875.chain_2416	2
scaffold_20	retained_exon	11086157	11086249	-	asmbl_27060	none	STRG.23609.3,Trinity_GG_30167_c1_g1_i2,blat.proc3829899.chain_616	3	STRG.23609.2,Trinity_GG_30167_c1_g1_i3,blat.proc3829899.chain_617	3
scaffold_1	alternate_exon	20469580	20470397	-	asmbl_1180	none	STRG.1395.1	1	STRG.1395.2	1
scaffold_26	ends_in_intron	6345453	6345453	-	asmbl_34950	none	Trinity_GG_32825_c0_g1_i2,blat.proc3829901.chain_1456	2	STRG.28314.1,blat.proc3829901.chain_1457	2
scaffold_3	retained_intron	5129399	5129745	-	asmbl_38787	none	STRG.3205.1,blat.proc3829887.chain_2931	2	STRG.3205.3,blat.proc3829887.chain_2932	2
scaffold_17	retained_intron	7023727	7024347	+	asmbl_18015	none	STRG.20355.3	1	STRG.20355.1	1
scaffold_3	starts_in_intron	14009872	14009872	+	asmbl_40447	none	Trinity_GG_2072_c0_g1_i4,blat.proc3829873.chain_94	2	STRG.3747.1,Trinity_GG_2072_c0_g1_i3,Trinity_GG_2072_c0_g1_i6,blat.proc3829873.chain_96,blat.proc3829873.chain_98	5
scaffold_26	spliced_intron	3811137	3811207	-	asmbl_34782	none	STRG.28065.1,blat.proc3829901.chain_1271	2	STRG.28065.2,blat.proc3829901.chain_1270	2
scaffold_7	alt_donor	8070046	8070047	+	asmbl_50836	none	STRG.9038.2,blat.proc3829875.chain_1463	2	STRG.9038.1,blat.proc3829875.chain_1462	2
scaffold_5	retained_intron	14569065	14569231	-	asmbl_45979	none	blat.proc3829889.chain_2695	1	STRG.6648.1,blat.proc3829889.chain_2698	2
scaffold_5	starts_in_intron	15486056	15486056	+	asmbl_44660,asmbl_44662	none	STRG.6727.2,STRG.6727.3	2	STRG.6727.1	1
scaffold_15	starts_in_intron	15153687	15153687	+	asmbl_14669	none	STRG.18895.5	1	Trinity_GG_10325_c0_g1_i7,Trinity_GG_10325_c0_g1_i8,blat.proc3829879.chain_3399,blat.proc3829879.chain_3400,blat.proc3829879.chain_3401,blat.proc3829879.chain_3402	6
scaffold_2	retained_intron	16860835	16861118	+	asmbl_25185	none	blat.proc3829871.chain_2827	1	STRG.2599.1,STRG.2599.2,blat.proc3829871.chain_2828,blat.proc3829871.chain_2831	4
scaffold_2	alt_acceptor	15488555	15488556	+	asmbl_25077,asmbl_25079,asmbl_25080	none	STRG.2499.2,STRG.2499.4,blat.proc3829871.chain_2698,blat.proc3829871.chain_2699	4	STRG.2499.1,STRG.2499.3,blat.proc3829871.chain_2700	3
scaffold_23	ends_in_intron	2307212	2307212	+	asmbl_30687	none	blat.proc3829883.chain_2530	1	STRG.25687.1,blat.proc3829883.chain_2529,blat.proc3829883.chain_2531	3
scaffold_15	skipped_exon	6882902	6884459	-	asmbl_15278,asmbl_15280,asmbl_15282,asmbl_15285,asmbl_15287	none	STRG.18290.1,STRG.18290.5,STRG.18290.6,blat.proc3829895.chain_2937,blat.proc3829895.chain_2939,blat.proc3829895.chain_2942	6	STRG.18290.2,STRG.18290.3,Trinity_GG_27246_c0_g1_i5,blat.proc3829895.chain_2933,blat.proc3829895.chain_2934,blat.proc3829895.chain_2935,blat.proc3829895.chain_2936,blat.proc3829895.chain_2940	8
scaffold_24	starts_in_intron	9938580	9938580	-	asmbl_33143	none	blat.proc3829901.chain_255	1	STRG.26950.2	1
scaffold_2	skipped_exon	7042421	7042836	+	asmbl_24551,asmbl_24552	none	Trinity_GG_1152_c0_g1_i2,Trinity_GG_1152_c0_g1_i5,blat.proc3829871.chain_2110,blat.proc3829871.chain_2111	4	STRG.2043.1,Trinity_GG_1152_c0_g1_i1,Trinity_GG_1152_c0_g1_i3,blat.proc3829871.chain_2112,blat.proc3829871.chain_2113	5
scaffold_5	retained_intron	14262431	14262734	+	asmbl_44583	none	STRG.6629.3,blat.proc3829873.chain_2762,blat.proc3829873.chain_2771	3	blat.proc3829873.chain_2765	1
scaffold_27	alt_donor	9995071	9995072	+	asmbl_36513	none	STRG.29213.2,blat.proc3829885.chain_2344	2	STRG.29213.1	1
scaffold_21	alt_donor	7729046	7729047	+	asmbl_28779,asmbl_28781,asmbl_28783	none	STRG.24301.2,STRG.24301.4,blat.proc3829883.chain_1448,blat.proc3829883.chain_1449	4	STRG.24301.1	1
scaffold_19	alternate_exon	9454846	9454974	+	asmbl_22398	none	STRG.22365.2,blat.proc3829881.chain_3308	2	STRG.22365.1,STRG.22365.3,blat.proc3829881.chain_3306	3
scaffold_3	alternate_exon	3096229	3096750	-	asmbl_38708	none	STRG.3062.1,blat.proc3829887.chain_2824	2	STRG.3062.2,blat.proc3829887.chain_2823	2
scaffold_19	alternate_exon	3549863	3549922	+	asmbl_22125,asmbl_22128,asmbl_22130	none	STRG.22033.1,STRG.22033.2,STRG.22033.3	3	STRG.22033.4	1
scaffold_2	alternate_exon	14342901	14343078	-	asmbl_23611	none	blat.proc3829887.chain_2306	1	blat.proc3829887.chain_2307	1
scaffold_6	spliced_intron	13317856	13318018	+	asmbl_47462	none	STRG.8084.2,Trinity_GG_4407_c0_g1_i2,blat.proc3829875.chain_442	3	STRG.8084.1,Trinity_GG_4407_c0_g1_i1,blat.proc3829875.chain_443	3
scaffold_2	alt_donor	19359384	19359385	+	asmbl_25313	none	STRG.2800.2	1	STRG.2800.1,blat.proc3829871.chain_2966	2
scaffold_11	alt_donor	14532977	14532978	+	asmbl_6071	none	blat.proc3829877.chain_2743	1	STRG.14239.3,Trinity_GG_7860_c0_g1_i6,blat.proc3829877.chain_2745	3
scaffold_26	spliced_intron	6656037	6656136	+	asmbl_35623,asmbl_35624,asmbl_35626	none	STRG.28361.1,blat.proc3829885.chain_1287,blat.proc3829885.chain_1288,blat.proc3829885.chain_1290	4	blat.proc3829885.chain_1289	1
scaffold_13	alt_donor	3746360	3746361	+	asmbl_10721,asmbl_10724	none	STRG.15683.2,Trinity_GG_8626_c0_g1_i1,blat.proc3829879.chain_381	3	STRG.15683.1,Trinity_GG_8626_c0_g1_i4,blat.proc3829879.chain_382	3
scaffold_14	retained_intron	12824418	12824705	-	asmbl_13602	none	blat.proc3829895.chain_2340	1	STRG.17589.1,STRG.17589.2,STRG.17589.4,blat.proc3829895.chain_2338,blat.proc3829895.chain_2339	5
scaffold_3	ends_in_intron	4282203	4282203	+	asmbl_39955	none	blat.proc3829871.chain_3283	1	STRG.3120.1,STRG.3120.2	2
scaffold_1	alt_acceptor	20135004	20135005	-	asmbl_1170,asmbl_1172	none	STRG.1381.1,STRG.1381.2	2	STRG.1381.3	1
scaffold_16	alternate_exon	14543823	14544203	-	asmbl_16641	none	STRG.19822.3	1	STRG.19822.1,Trinity_GG_28106_c0_g1_i1,blat.proc3829897.chain_790,blat.proc3829897.chain_791	4
scaffold_26	retained_intron	5044652	5044757	+	asmbl_35469,asmbl_35479	none	blat.proc3829885.chain_1158,blat.proc3829885.chain_1164	2	STRG.28206.1,blat.proc3829885.chain_1156,blat.proc3829885.chain_1157,blat.proc3829885.chain_1159,blat.proc3829885.chain_1163,blat.proc3829885.chain_1167,blat.proc3829885.chain_1168,blat.proc3829885.chain_1169	8
scaffold_6	alt_acceptor	13577498	13577499	-	asmbl_48850	none	STRG.8093.4	1	STRG.8093.3	1
scaffold_7	spliced_intron	4544752	4545008	+	asmbl_50626,asmbl_50627,asmbl_50628	none	STRG.8819.1,blat.proc3829875.chain_1241,blat.proc3829875.chain_1242,blat.proc3829875.chain_1244	4	blat.proc3829875.chain_1243	1
scaffold_12	spliced_intron	12288119	12288532	-	asmbl_7985,asmbl_7988,asmbl_7989,asmbl_7991	none	STRG.15114.2,STRG.15114.3,STRG.15114.4,STRG.15114.6	4	STRG.15114.1	1
scaffold_5	alt_acceptor	15764722	15764723	+	asmbl_44677,asmbl_44680,asmbl_44681,asmbl_44682	none	STRG.6763.1,blat.proc3829873.chain_2874,blat.proc3829873.chain_2875,blat.proc3829873.chain_2877,blat.proc3829873.chain_2880	5	blat.proc3829873.chain_2881	1
scaffold_21	retained_exon	9707077	9707192	-	asmbl_27982	none	STRG.24416.1	1	STRG.24416.2	1
scaffold_20	skipped_exon	11566279	11568474	+	asmbl_26230	none	blat.proc3829883.chain_792	1	STRG.23649.2,Trinity_GG_13096_c0_g1_i1,blat.proc3829883.chain_791	3
scaffold_18	alternate_exon	7174939	7175089	-	asmbl_19962,asmbl_19964	none	STRG.21405.2,STRG.21405.3,Trinity_GG_28995_c0_g1_i5,blat.proc3829897.chain_2258	4	STRG.21405.1,Trinity_GG_28995_c0_g1_i3,blat.proc3829897.chain_2259	3
scaffold_5	starts_in_intron	5608188	5608188	+	asmbl_44019	none	blat.proc3829873.chain_2067	1	STRG.5977.2	1
scaffold_5	alt_acceptor	823495	823496	+	asmbl_43767	none	STRG.5632.3	1	STRG.5632.1,STRG.5632.2	2
scaffold_4	starts_in_intron	5652744	5652744	-	asmbl_41362	none	blat.proc3829889.chain_605	1	STRG.4469.1,STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_604,blat.proc3829889.chain_606,blat.proc3829889.chain_608,blat.proc3829889.chain_611,blat.proc3829889.chain_612,blat.proc3829889.chain_613	11
scaffold_9	starts_in_intron	11753443	11753443	+	asmbl_54359	none	Trinity_GG_6361_c0_g1_i5,blat.proc3829877.chain_196	2	STRG.11479.1,blat.proc3829877.chain_194,blat.proc3829877.chain_195	3
scaffold_18	spliced_intron	7867916	7867988	+	asmbl_20822,asmbl_20823,asmbl_20829	none	STRG.21477.2,STRG.21477.3,Trinity_GG_11877_c0_g1_i14,Trinity_GG_11877_c0_g1_i7,blat.proc3829881.chain_2468,blat.proc3829881.chain_2469,blat.proc3829881.chain_2471	7	STRG.21477.1,STRG.21477.4,STRG.21477.6,Trinity_GG_11877_c0_g1_i12,Trinity_GG_11877_c0_g1_i6,blat.proc3829881.chain_2467,blat.proc3829881.chain_2473,blat.proc3829881.chain_2474,blat.proc3829881.chain_2475,blat.proc3829881.chain_2476	10
scaffold_23	skipped_exon	4100717	4102604	-	asmbl_31552,asmbl_31553	none	STRG.25802.2,blat.proc3829899.chain_2934	2	STRG.25802.1,STRG.25802.4,STRG.25802.5	3
scaffold_5	retained_exon	9084882	9084950	+	asmbl_44259,asmbl_44262,asmbl_44263,asmbl_44264,asmbl_44265,asmbl_44266,asmbl_44267,asmbl_44268,asmbl_44269,asmbl_44270	none	STRG.6237.1,STRG.6237.2,STRG.6237.3,STRG.6237.4,STRG.6237.5,blat.proc3829873.chain_2418,blat.proc3829873.chain_2419,blat.proc3829873.chain_2421,blat.proc3829873.chain_2422,blat.proc3829873.chain_2423,blat.proc3829873.chain_2426	11	blat.proc3829873.chain_2424	1
scaffold_3	starts_in_intron	19807743	19807743	+	asmbl_40733,asmbl_40734	none	blat.proc3829873.chain_435,blat.proc3829873.chain_438	2	STRG.4094.1,STRG.4094.2,STRG.4094.3,blat.proc3829873.chain_434,blat.proc3829873.chain_436	5
scaffold_22	alternate_exon	11343527	11344102	-	asmbl_30434	none	STRG.25449.2,blat.proc3829899.chain_2553	2	blat.proc3829899.chain_2552	1
scaffold_1	retained_exon	4239039	4239168	+	asmbl_1642,asmbl_1650	none	STRG.253.2,blat.proc3829871.chain_224,blat.proc3829871.chain_233	3	STRG.253.3,STRG.253.4,blat.proc3829871.chain_228,blat.proc3829871.chain_232	4
scaffold_25	alt_acceptor	4439954	4439955	+	asmbl_33492,asmbl_33493,asmbl_33494,asmbl_33497	none	STRG.27356.1,STRG.27356.2,STRG.27356.3,Trinity_GG_15095_c0_g1_i1,Trinity_GG_15095_c0_g1_i2,Trinity_GG_15095_c0_g1_i3,blat.proc3829885.chain_403,blat.proc3829885.chain_404,blat.proc3829885.chain_405	9	STRG.27356.4	1
scaffold_22	retained_intron	485520	485599	+	asmbl_29151	none	blat.proc3829883.chain_1727	1	STRG.24679.1,STRG.24679.3,Trinity_GG_13642_c0_g1_i3,blat.proc3829883.chain_1725,blat.proc3829883.chain_1726	5
scaffold_14	alternate_exon	13600285	13600566	+	asmbl_12470,asmbl_12474	none	STRG.17629.2,blat.proc3829879.chain_2307	2	STRG.17629.1,blat.proc3829879.chain_2306	2
scaffold_26	ends_in_intron	2927146	2927146	+	asmbl_35290	none	blat.proc3829885.chain_944	1	STRG.27961.1,STRG.27961.2,Trinity_GG_15430_c0_g1_i1,blat.proc3829885.chain_945	4
scaffold_1	retained_exon	3679503	3679991	+	asmbl_1623,asmbl_1624	none	STRG.237.1,STRG.237.2,blat.proc3829871.chain_291,blat.proc3829871.chain_293	4	STRG.237.3	1
scaffold_14	alt_acceptor	15693711	15693712	-	asmbl_13719	none	STRG.17796.3	1	STRG.17796.2,blat.proc3829895.chain_2522	2
scaffold_7	alternate_exon	11247707	11249705	+	asmbl_51044	none	STRG.9265.2,blat.proc3829875.chain_1651	2	STRG.9265.1,STRG.9265.3,Trinity_GG_5108_c0_g1_i2,blat.proc3829875.chain_1652	4
scaffold_27	alt_acceptor	5660595	5660596	+	asmbl_36309	none	STRG.28952.2,blat.proc3829885.chain_2032	2	STRG.28952.1,blat.proc3829885.chain_2030,blat.proc3829885.chain_2031	3
scaffold_11	spliced_intron	10981902	10982289	-	asmbl_6988	none	STRG.14049.3	1	STRG.14049.1,Trinity_GG_24863_c0_g1_i1,blat.proc3829893.chain_2467	3
scaffold_11	spliced_intron	6952071	6952149	-	asmbl_6723	none	STRG.13710.2,blat.proc3829893.chain_2163	2	STRG.13710.1,STRG.13710.3,blat.proc3829893.chain_2161,blat.proc3829893.chain_2162,blat.proc3829893.chain_2164,blat.proc3829893.chain_2165	6
scaffold_13	retained_intron	3322991	3323068	-	asmbl_9490	none	Trinity_GG_25777_c0_g1_i1,blat.proc3829895.chain_381	2	STRG.15625.1,STRG.15625.2,Trinity_GG_25777_c0_g1_i2,blat.proc3829895.chain_380	4
scaffold_24	alternate_exon	4317229	4318880	+	asmbl_32200	none	STRG.26578.2,blat.proc3829883.chain_3429,blat.proc3829883.chain_3430	3	Trinity_GG_14664_c0_g1_i1,blat.proc3829883.chain_3428	2
scaffold_11	retained_exon	11937128	11937722	-	asmbl_7021	none	STRG.14160.2	1	STRG.14160.1	1
scaffold_18	alternate_exon	4403159	4403239	-	asmbl_19838	none	STRG.21217.2	1	STRG.21217.1	1
scaffold_22	spliced_intron	10004898	10005099	+	asmbl_29627	none	STRG.25327.1,blat.proc3829883.chain_2325	2	STRG.25327.2	1
scaffold_8	starts_in_intron	16142609	16142609	-	asmbl_53370	none	blat.proc3829891.chain_2742	1	STRG.10597.1,blat.proc3829891.chain_2741,blat.proc3829891.chain_2743	3
scaffold_1	retained_intron	19006360	19006412	+	asmbl_2562	none	STRG.1322.4	1	STRG.1322.1	1
scaffold_2	alt_acceptor	16288292	16288293	+	asmbl_25137,asmbl_25138,asmbl_25141,asmbl_25142	none	STRG.2560.1,STRG.2560.2,blat.proc3829871.chain_2750,blat.proc3829871.chain_2752	4	blat.proc3829871.chain_2749	1
scaffold_28	retained_intron	2810466	2811511	-	asmbl_37409,asmbl_37412,asmbl_37413	none	blat.proc3829901.chain_2492,blat.proc3829901.chain_2495,blat.proc3829901.chain_2496	3	STRG.29459.1,blat.proc3829901.chain_2491,blat.proc3829901.chain_2494,blat.proc3829901.chain_2497	4
scaffold_12	spliced_intron	14173452	14173745	+	asmbl_9033	none	blat.proc3829877.chain_3707	1	STRG.15236.1,STRG.15236.2,Trinity_GG_8405_c0_g1_i9,blat.proc3829877.chain_3705,blat.proc3829877.chain_3706,blat.proc3829877.chain_3708	6
scaffold_28	alt_donor	8153960	8153961	+	asmbl_38423	none	STRG.29862.2	1	STRG.29862.1	1
scaffold_10	alt_acceptor	5677637	5677638	-	asmbl_3294	none	STRG.12380.2	1	STRG.12380.1,blat.proc3829893.chain_828	2
scaffold_15	alt_acceptor	11167142	11167143	+	asmbl_14428	none	STRG.18583.1	1	STRG.18583.2	1
scaffold_2	alt_donor	7895028	7895029	+	asmbl_24629	none	Trinity_GG_1187_c0_g1_i17,blat.proc3829871.chain_2198	2	STRG.2086.2,STRG.2086.3,blat.proc3829871.chain_2193,blat.proc3829871.chain_2194,blat.proc3829871.chain_2195,blat.proc3829871.chain_2199	6
scaffold_10	retained_intron	3510530	3510584	+	asmbl_4330	none	STRG.12181.1,blat.proc3829877.chain_826,blat.proc3829877.chain_827,blat.proc3829877.chain_828	4	STRG.12181.2	1
scaffold_13	spliced_intron	7935394	7935495	-	asmbl_9874,asmbl_9875,asmbl_9876,asmbl_9877	none	STRG.16055.1,STRG.16055.2,STRG.16055.3,blat.proc3829895.chain_798,blat.proc3829895.chain_799,blat.proc3829895.chain_800,blat.proc3829895.chain_803	7	Trinity_GG_26026_c0_g1_i4,blat.proc3829895.chain_801	2
scaffold_24	skipped_exon	2519404	2521130	-	asmbl_32783	none	blat.proc3829899.chain_3519	1	STRG.26451.1,blat.proc3829899.chain_3521	2
scaffold_26	alt_donor	6351294	6351295	-	asmbl_34952,asmbl_34953,asmbl_34954,asmbl_34957	none	STRG.28315.2,STRG.28315.3,STRG.28315.4,STRG.28315.5,blat.proc3829901.chain_1403,blat.proc3829901.chain_1404,blat.proc3829901.chain_1406	7	Trinity_GG_32794_c0_g1_i3,blat.proc3829901.chain_1405	2
scaffold_11	spliced_intron	16652240	16652614	+	asmbl_6150,asmbl_6153	none	STRG.14353.1,blat.proc3829877.chain_2841,blat.proc3829877.chain_2842	3	blat.proc3829877.chain_2838,blat.proc3829877.chain_2839	2
scaffold_8	alt_donor	12917596	12917597	-	asmbl_53250,asmbl_53251,asmbl_53252,asmbl_53257	none	STRG.10471.2,STRG.10471.3,STRG.10471.5,STRG.10471.6,blat.proc3829891.chain_2571,blat.proc3829891.chain_2573	6	STRG.10471.4,STRG.10471.7,blat.proc3829891.chain_2572	3
scaffold_24	alt_donor	6841917	6841918	+	asmbl_32362	none	STRG.26715.2,Trinity_GG_14780_c0_g1_i2,blat.proc3829883.chain_3630	3	STRG.26715.1,Trinity_GG_14780_c0_g1_i1,blat.proc3829883.chain_3631	3
scaffold_19	alt_donor	11583779	11583780	-	asmbl_21643	none	STRG.22486.2,blat.proc3829897.chain_3127	2	STRG.22486.1,blat.proc3829897.chain_3125,blat.proc3829897.chain_3126	3
scaffold_24	alternate_exon	2059086	2062154	-	asmbl_32758	none	STRG.26414.2,Trinity_GG_31777_c0_g1_i1,Trinity_GG_31777_c1_g1_i1,Trinity_GG_31777_c3_g1_i1,blat.proc3829899.chain_3482,blat.proc3829899.chain_3484,blat.proc3829899.chain_3486,blat.proc3829899.chain_3487	8	STRG.26414.4,Trinity_GG_31777_c2_g1_i2,blat.proc3829899.chain_3485	3
scaffold_25	spliced_intron	6067817	6067976	-	asmbl_34294	none	blat.proc3829901.chain_721	1	blat.proc3829901.chain_716,blat.proc3829901.chain_718,blat.proc3829901.chain_719	3
scaffold_7	starts_in_intron	15001411	15001411	+	asmbl_51293	none	blat.proc3829875.chain_1979	1	STRG.9511.1,blat.proc3829875.chain_1980	2
scaffold_8	alternate_exon	17302624	17302777	-	asmbl_53455	none	STRG.10645.4	1	STRG.10645.1,STRG.10645.2,blat.proc3829891.chain_2805,blat.proc3829891.chain_2806	4
scaffold_3	ends_in_intron	4287322	4287322	+	asmbl_39957	none	blat.proc3829871.chain_3290	1	STRG.3132.1	1
scaffold_14	retained_intron	9272559	9272679	-	asmbl_13349	none	blat.proc3829895.chain_1998	1	STRG.17323.1,STRG.17323.2,STRG.17323.4,blat.proc3829895.chain_1994,blat.proc3829895.chain_1995,blat.proc3829895.chain_1996,blat.proc3829895.chain_1997	7
scaffold_7	skipped_exon	7415203	7417634	+	asmbl_50806	none	STRG.8984.1,blat.proc3829875.chain_1433	2	STRG.8984.2,Trinity_GG_4975_c0_g1_i1,blat.proc3829875.chain_1434	3
scaffold_22	starts_in_intron	5997584	5997584	+	asmbl_29374	none	blat.proc3829883.chain_1984	1	blat.proc3829883.chain_1986	1
scaffold_6	spliced_intron	1550441	1550570	+	asmbl_46672	none	STRG.7196.2,Trinity_GG_3964_c0_g1_i1,blat.proc3829873.chain_3343	3	STRG.7196.1,Trinity_GG_3964_c0_g1_i2,blat.proc3829873.chain_3344	3
scaffold_20	alt_donor	9185074	9185075	+	asmbl_25996	none	STRG.23451.1,blat.proc3829883.chain_552	2	blat.proc3829883.chain_551,blat.proc3829899.chain_463	2
scaffold_2	retained_exon	7782119	7782194	+	asmbl_24605,asmbl_24608,asmbl_24611,asmbl_24613	none	STRG.2076.1,STRG.2076.2,STRG.2076.4,blat.proc3829871.chain_2203,blat.proc3829871.chain_2205,blat.proc3829871.chain_2208,blat.proc3829871.chain_2211,blat.proc3829871.chain_2213	8	STRG.2076.5,STRG.2076.6,blat.proc3829871.chain_2207	3
scaffold_2	retained_exon	7881156	7881454	+	asmbl_24624	none	Trinity_GG_1183_c0_g1_i16,blat.proc3829871.chain_2182	2	Trinity_GG_1183_c0_g1_i2,blat.proc3829871.chain_2181	2
scaffold_3	retained_intron	13703667	13704187	+	asmbl_40412	none	blat.proc3829873.chain_132	1	STRG.3712.1,STRG.3712.2,STRG.3712.3,STRG.3712.4,Trinity_GG_2088_c0_g1_i7,blat.proc3829873.chain_129,blat.proc3829873.chain_130,blat.proc3829873.chain_133,blat.proc3829873.chain_134	9
scaffold_24	alt_acceptor	8126949	8126950	+	asmbl_32420	none	blat.proc3829883.chain_3727	1	blat.proc3829883.chain_3726	1
scaffold_22	ends_in_intron	11404461	11404461	+	asmbl_29668	none	blat.proc3829883.chain_2393	1	STRG.25460.2	1
scaffold_9	ends_in_intron	17852467	17852467	+	asmbl_54632,asmbl_54633	none	STRG.11860.1,STRG.11860.2	2	STRG.11860.3	1
scaffold_23	alternate_exon	800997	808238	-	asmbl_31329	none	STRG.25556.1	1	STRG.25556.3,Trinity_GG_31307_c0_g1_i5,Trinity_GG_31307_c0_g1_i7,blat.proc3829899.chain_2667,blat.proc3829899.chain_2671	5
scaffold_2	alt_acceptor	9262350	9262351	-	asmbl_23390	none	STRG.2172.3	1	STRG.2172.1,STRG.2172.2,blat.proc3829887.chain_2082,blat.proc3829887.chain_2083	4
scaffold_19	starts_in_intron	7904699	7904699	+	asmbl_22299	none	blat.proc3829881.chain_3116	1	STRG.22244.1,blat.proc3829881.chain_3115	2
scaffold_28	starts_in_intron	2932564	2932564	-	asmbl_37431	none	STRG.29467.1	1	STRG.29467.2	1
scaffold_15	ends_in_intron	13721472	13721472	+	asmbl_14601	none	blat.proc3829879.chain_3410	1	STRG.18795.1,STRG.18795.2,blat.proc3829879.chain_3411	3
scaffold_2	spliced_intron	7783180	7784364	+	asmbl_24607,asmbl_24608	none	STRG.2076.2,STRG.2076.6,blat.proc3829871.chain_2205,blat.proc3829871.chain_2211	4	STRG.2076.1,STRG.2076.5,Trinity_GG_1189_c0_g1_i13,Trinity_GG_1189_c0_g1_i3,blat.proc3829871.chain_2210,blat.proc3829871.chain_2212	6
scaffold_13	retained_intron	16436550	16436943	+	asmbl_11557,asmbl_11558	none	STRG.16684.2,blat.proc3829879.chain_1410	2	STRG.16684.1,Trinity_GG_9187_c0_g1_i4,Trinity_GG_9187_c0_g1_i6,blat.proc3829879.chain_1411,blat.proc3829879.chain_1412	5
scaffold_3	alt_donor	7714350	7714351	-	asmbl_38935	none	blat.proc3829887.chain_3170	1	STRG.3361.1,blat.proc3829887.chain_3174,blat.proc3829887.chain_3177	3
scaffold_14	spliced_intron	11386909	11387002	-	asmbl_13460,asmbl_13462,asmbl_13464	none	STRG.17457.1,STRG.17457.2,blat.proc3829895.chain_2096,blat.proc3829895.chain_2098	4	blat.proc3829895.chain_2094	1
scaffold_7	alt_acceptor	8772264	8772265	+	asmbl_50935,asmbl_50936	none	STRG.9107.1,STRG.9107.3,blat.proc3829875.chain_1550,blat.proc3829875.chain_1551	4	STRG.9107.2	1
scaffold_4	alt_acceptor	14024300	14024301	-	asmbl_41775	none	STRG.5022.2	1	STRG.5022.1,blat.proc3829889.chain_984	2
scaffold_15	alternate_exon	11494900	11495342	-	asmbl_15535	none	STRG.18603.2	1	STRG.18603.1,blat.proc3829895.chain_3384,blat.proc3829895.chain_3386,blat.proc3829895.chain_3387	4
scaffold_23	spliced_intron	7984376	7984498	+	asmbl_31041,asmbl_31042,asmbl_31043	none	STRG.26088.1,STRG.26088.2,blat.proc3829883.chain_2988	3	blat.proc3829883.chain_2987	1
scaffold_3	spliced_intron	5951042	5951658	-	asmbl_38836,asmbl_38837	none	STRG.3255.5,STRG.3255.7,blat.proc3829887.chain_3047	3	STRG.3255.6,blat.proc3829887.chain_3049	2
scaffold_19	starts_in_intron	13217999	13217999	-	asmbl_21829,asmbl_21833,asmbl_21835,asmbl_21839,asmbl_21840,asmbl_21841	none	Trinity_GG_29598_c1_g1_i10,Trinity_GG_29598_c1_g1_i2,Trinity_GG_29598_c1_g1_i3,blat.proc3829897.chain_3361,blat.proc3829897.chain_3362,blat.proc3829897.chain_3364,blat.proc3829897.chain_3365,blat.proc3829897.chain_3367,blat.proc3829897.chain_3369	9	STRG.22682.1,STRG.22682.3,Trinity_GG_29598_c1_g1_i4,Trinity_GG_29598_c1_g1_i7,blat.proc3829897.chain_3359,blat.proc3829897.chain_3360,blat.proc3829897.chain_3363,blat.proc3829897.chain_3366,blat.proc3829897.chain_3368,blat.proc3829897.chain_3370	10
scaffold_17	alt_acceptor	13972823	13972824	-	asmbl_19446	none	STRG.20876.2	1	STRG.20876.1,STRG.20876.4,blat.proc3829897.chain_1764,blat.proc3829897.chain_1766	4
scaffold_8	spliced_intron	9651612	9651635	+	asmbl_52079,asmbl_52080,asmbl_52081	none	blat.proc3829875.chain_2728,blat.proc3829875.chain_2729,blat.proc3829875.chain_2730	3	STRG.10210.1,STRG.10210.2,STRG.10210.3	3
scaffold_16	ends_in_intron	12345024	12345024	+	asmbl_17441	none	blat.proc3829881.chain_621	1	STRG.19733.1,blat.proc3829881.chain_623	2
scaffold_15	retained_intron	1965700	1966897	-	asmbl_14987	none	STRG.17972.3,Trinity_GG_27108_c0_g1_i1,blat.proc3829895.chain_2686,blat.proc3829895.chain_2687	4	STRG.17972.2,blat.proc3829895.chain_2688	2
scaffold_7	spliced_intron	12259661	12259956	+	asmbl_51106	none	Trinity_GG_5126_c0_g1_i1,blat.proc3829875.chain_1683	2	STRG.9311.1,Trinity_GG_5126_c0_g1_i3,blat.proc3829875.chain_1684	3
scaffold_23	starts_in_intron	5764877	5764877	-	asmbl_31663	none	STRG.25927.1,blat.proc3829899.chain_3058	2	STRG.25927.2,STRG.25927.3,Trinity_GG_31528_c0_g2_i1,Trinity_GG_31528_c0_g2_i2,blat.proc3829899.chain_3059,blat.proc3829899.chain_3060	6
scaffold_2	alt_donor	8055708	8055709	-	asmbl_23326	none	STRG.2095.4,blat.proc3829887.chain_2006	2	STRG.2095.1,STRG.2095.2,blat.proc3829887.chain_2005,blat.proc3829887.chain_2008,blat.proc3829887.chain_2009	5
scaffold_28	alternate_exon	1393741	1393822	-	asmbl_37306	none	STRG.29312.1,Trinity_GG_33399_c0_g1_i1	2	STRG.29312.2	1
scaffold_10	spliced_intron	11971085	11971272	+	asmbl_4782,asmbl_4791,asmbl_4792,asmbl_4794	none	STRG.12831.1,blat.proc3829877.chain_1313,blat.proc3829877.chain_1319,blat.proc3829877.chain_1321,blat.proc3829877.chain_1322	5	Trinity_GG_7032_c0_g1_i9,blat.proc3829877.chain_1317	2
scaffold_27	retained_intron	2997750	2997932	+	asmbl_36110,asmbl_36120	none	STRG.28767.4,blat.proc3829885.chain_1844,blat.proc3829885.chain_1847	3	STRG.28767.5,blat.proc3829885.chain_1839	2
scaffold_5	alt_donor	5972401	5972402	+	asmbl_44045	none	STRG.6001.2	1	blat.proc3829873.chain_2174	1
scaffold_12	starts_in_intron	15410462	15410462	+	asmbl_9091	none	Trinity_GG_8428_c0_g1_i2,blat.proc3829879.chain_2	2	STRG.15326.1,Trinity_GG_8428_c0_g1_i1,blat.proc3829879.chain_3	3
scaffold_1	alt_acceptor	9176403	9176404	-	asmbl_529	none	STRG.606.2	1	STRG.606.1,blat.proc3829887.chain_518	2
scaffold_2	retained_intron	7469822	7470021	-	asmbl_23285,asmbl_23288	none	STRG.2075.2,blat.proc3829887.chain_1898	2	STRG.2075.4,blat.proc3829887.chain_1892	2
scaffold_15	spliced_intron	10768425	10768689	+	asmbl_14405,asmbl_14406,asmbl_14409,asmbl_14410	none	STRG.18552.3,STRG.18552.5,blat.proc3829879.chain_3157,blat.proc3829879.chain_3160,blat.proc3829879.chain_3161,blat.proc3829879.chain_3162	6	STRG.18552.6,blat.proc3829879.chain_3159	2
scaffold_4	spliced_intron	4414707	4415344	+	asmbl_42571,asmbl_42574,asmbl_42576,asmbl_42583,asmbl_42585,asmbl_42586	none	STRG.4344.3,Trinity_GG_2404_c0_g1_i19,Trinity_GG_2404_c0_g1_i5,Trinity_GG_2404_c0_g1_i8,blat.proc3829873.chain_681,blat.proc3829873.chain_687,blat.proc3829873.chain_688,blat.proc3829873.chain_689,blat.proc3829873.chain_695,blat.proc3829873.chain_696	10	Trinity_GG_2404_c0_g1_i10,blat.proc3829873.chain_680,blat.proc3829873.chain_686,blat.proc3829873.chain_690,blat.proc3829873.chain_698	5
scaffold_13	retained_intron	3530974	3531292	+	asmbl_10687	none	blat.proc3829879.chain_364	1	STRG.15655.1,STRG.15655.2,blat.proc3829879.chain_361,blat.proc3829879.chain_362,blat.proc3829879.chain_363,blat.proc3829879.chain_365	6
scaffold_6	starts_in_intron	16059987	16059987	-	asmbl_49037	none	Trinity_GG_21764_c0_g1_i4	1	STRG.8333.1,blat.proc3829891.chain_652	2
scaffold_26	alt_acceptor	3561048	3561049	+	asmbl_35326	none	STRG.28018.2	1	STRG.28018.1,STRG.28018.3,STRG.28018.4,blat.proc3829885.chain_1001,blat.proc3829885.chain_1005	5
scaffold_23	starts_in_intron	8813283	8813283	+	asmbl_31079	none	Trinity_GG_14443_c0_g1_i1,blat.proc3829883.chain_3038	2	STRG.26127.1,blat.proc3829883.chain_3036,blat.proc3829883.chain_3037,blat.proc3829883.chain_3039	4
scaffold_28	spliced_intron	2810466	2811511	-	asmbl_37408,asmbl_37411,asmbl_37414	none	STRG.29459.1,blat.proc3829901.chain_2491,blat.proc3829901.chain_2494,blat.proc3829901.chain_2497	4	blat.proc3829901.chain_2492,blat.proc3829901.chain_2495,blat.proc3829901.chain_2496	3
scaffold_8	retained_exon	1340797	1340880	+	asmbl_51680	none	blat.proc3829875.chain_2147	1	STRG.9754.1	1
scaffold_13	alt_donor	1380202	1380203	-	asmbl_9366,asmbl_9369	none	STRG.15491.2,blat.proc3829895.chain_208,blat.proc3829895.chain_210	3	STRG.15491.1	1
scaffold_12	alternate_exon	8948958	8949061	-	asmbl_7760	none	STRG.14886.2	1	STRG.14886.1,blat.proc3829893.chain_3270	2
scaffold_20	alt_acceptor	394856	394857	-	asmbl_26427	none	STRG.22722.1,Trinity_GG_29667_c0_g1_i4,blat.proc3829897.chain_3486	3	STRG.22722.2,blat.proc3829897.chain_3485	2
scaffold_11	alternate_exon	5655592	5655622	+	asmbl_5539	none	STRG.13619.2	1	STRG.13619.1,Trinity_GG_7502_c0_g1_i1,blat.proc3829877.chain_2118	3
scaffold_19	retained_exon	12256728	12256802	+	asmbl_22580	none	STRG.22539.2	1	STRG.22539.1,blat.proc3829881.chain_3432	2
scaffold_10	retained_intron	3439144	3439233	-	asmbl_3124	none	Trinity_GG_23751_c0_g1_i1,blat.proc3829893.chain_551	2	STRG.12167.2	1
scaffold_9	spliced_intron	16654233	16654417	-	asmbl_55563,asmbl_55564,asmbl_55565,asmbl_55566,asmbl_55567	none	STRG.11803.1,STRG.11803.2,STRG.11803.4,blat.proc3829893.chain_209,blat.proc3829893.chain_210,blat.proc3829893.chain_211,blat.proc3829893.chain_212,blat.proc3829893.chain_213	8	STRG.11803.3,Trinity_GG_23555_c0_g1_i3,blat.proc3829893.chain_214	3
scaffold_22	alt_acceptor	10059197	10059198	+	asmbl_29633	none	STRG.25339.2	1	STRG.25339.1,blat.proc3829883.chain_2336	2
scaffold_18	alt_acceptor	7875115	7875116	+	asmbl_20838,asmbl_20839	none	STRG.21481.3,blat.proc3829881.chain_2404	2	STRG.21481.1,STRG.21481.2,STRG.21481.4,blat.proc3829881.chain_2401,blat.proc3829881.chain_2402,blat.proc3829881.chain_2403	6
scaffold_23	alternate_exon	6848694	6859372	-	asmbl_31703	none	STRG.26000.3,Trinity_GG_31515_c0_g1_i1,Trinity_GG_31545_c1_g1_i1,blat.proc3829899.chain_3038,blat.proc3829899.chain_3092	5	STRG.26000.4,blat.proc3829899.chain_3093	2
scaffold_4	spliced_intron	19354316	19354420	-	asmbl_42185,asmbl_42188,asmbl_42190	none	STRG.5528.1,blat.proc3829889.chain_1612,blat.proc3829889.chain_1617	3	blat.proc3829889.chain_1609,blat.proc3829889.chain_1613	2
scaffold_1	starts_in_intron	13883408	13883408	-	asmbl_862	none	blat.proc3829887.chain_865	1	STRG.993.1,STRG.993.2,STRG.993.3,STRG.993.4,STRG.993.5,blat.proc3829887.chain_867,blat.proc3829887.chain_868	7
scaffold_1	alt_donor	13926172	13926173	-	asmbl_866	none	STRG.997.2	1	STRG.997.1,STRG.997.3,blat.proc3829887.chain_871	3
scaffold_3	ends_in_intron	8163059	8163059	-	asmbl_38964	none	Trinity_GG_18833_c2_g1_i1,blat.proc3829887.chain_3138	2	Trinity_GG_18833_c2_g2_i5,blat.proc3829887.chain_3140,blat.proc3829887.chain_3141,blat.proc3829887.chain_3142	4
scaffold_4	starts_in_intron	5243387	5243387	-	asmbl_41320	none	blat.proc3829889.chain_488	1	STRG.4418.1,blat.proc3829889.chain_489,blat.proc3829889.chain_490	3
scaffold_17	spliced_intron	4185297	4186012	-	asmbl_18887,asmbl_18888	none	STRG.20157.1,STRG.20157.2,blat.proc3829897.chain_1125,blat.proc3829897.chain_1126	4	STRG.20157.3,Trinity_GG_28343_c0_g1_i2,Trinity_GG_28343_c2_g1_i1,blat.proc3829897.chain_1124,blat.proc3829897.chain_1128	5
scaffold_2	spliced_intron	15272780	15272879	+	asmbl_25032,asmbl_25033,asmbl_25035,asmbl_25036,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25043	none	STRG.2481.1,blat.proc3829871.chain_2524,blat.proc3829871.chain_2526,blat.proc3829871.chain_2528,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2535,blat.proc3829871.chain_2536,blat.proc3829871.chain_2538	9	blat.proc3829871.chain_2525,blat.proc3829871.chain_2527,blat.proc3829871.chain_2531,blat.proc3829871.chain_2537	4
scaffold_15	spliced_intron	6961759	6962168	+	asmbl_14212	none	STRG.18295.1	1	Trinity_GG_10041_c0_g1_i2,blat.proc3829879.chain_2931	2
scaffold_14	retained_intron	8415587	8415753	+	asmbl_12223,asmbl_12224,asmbl_12226	none	STRG.17265.2,Trinity_GG_9512_c0_g1_i3,blat.proc3829879.chain_2012,blat.proc3829879.chain_2013	4	STRG.17265.1,blat.proc3829879.chain_2010,blat.proc3829879.chain_2011	3
scaffold_22	retained_exon	6903172	6903212	-	asmbl_30111	none	STRG.24992.2	1	STRG.24992.1	1
scaffold_10	retained_intron	8901030	8901211	-	asmbl_3546	none	STRG.12625.3	1	STRG.12625.1	1
scaffold_15	retained_intron	15857347	15857502	+	asmbl_14778,asmbl_14779	none	Trinity_GG_10383_c0_g1_i2,blat.proc3829879.chain_3541,blat.proc3829879.chain_3545	3	STRG.18964.3,STRG.18964.5,STRG.18964.6,Trinity_GG_10383_c0_g1_i3,Trinity_GG_10383_c0_g1_i7,blat.proc3829879.chain_3538,blat.proc3829879.chain_3539,blat.proc3829879.chain_3540,blat.proc3829879.chain_3542,blat.proc3829879.chain_3543	10
scaffold_5	retained_intron	10534403	10534511	-	asmbl_45742	none	STRG.6332.1,blat.proc3829889.chain_2347	2	STRG.6332.4	1
scaffold_13	starts_in_intron	5843319	5843319	-	asmbl_9696	none	blat.proc3829895.chain_571	1	STRG.15879.1,blat.proc3829895.chain_572,blat.proc3829895.chain_573	3
scaffold_14	retained_intron	405268	405492	+	asmbl_11720,asmbl_11721,asmbl_11724,asmbl_11729	none	STRG.16722.4,STRG.16722.6,STRG.16722.7,Trinity_GG_9219_c0_g1_i17,Trinity_GG_9219_c0_g1_i6,blat.proc3829879.chain_1465,blat.proc3829879.chain_1472	7	STRG.16722.3,STRG.16722.5,Trinity_GG_9219_c0_g1_i21,blat.proc3829879.chain_1468,blat.proc3829879.chain_1470	5
scaffold_2	alt_donor	13397950	13397951	+	asmbl_24874,asmbl_24876,asmbl_24877,asmbl_24879	none	STRG.2357.2,STRG.2357.3,blat.proc3829871.chain_2405,blat.proc3829871.chain_2406,blat.proc3829871.chain_2407	5	Trinity_GG_1292_c0_g1_i5,blat.proc3829871.chain_2409	2
scaffold_1	retained_intron	11626963	11627419	-	asmbl_657,asmbl_658	none	blat.proc3829887.chain_615,blat.proc3829887.chain_617	2	STRG.767.1,Trinity_GG_17396_c0_g1_i3,Trinity_GG_17396_c0_g1_i4,blat.proc3829887.chain_614	4
scaffold_18	alt_acceptor	1671568	1671569	+	asmbl_20399	none	STRG.21040.1,blat.proc3829881.chain_1943	2	STRG.21040.2,blat.proc3829881.chain_1944	2
scaffold_2	alt_acceptor	7266607	7266608	-	asmbl_23270	none	STRG.2055.2	1	STRG.2055.1,Trinity_GG_18155_c0_g1_i1,blat.proc3829887.chain_1952	3
scaffold_10	ends_in_intron	13778881	13778881	-	asmbl_3835,asmbl_3838	none	blat.proc3829893.chain_1501,blat.proc3829893.chain_1502	2	STRG.12968.2	1
scaffold_9	spliced_intron	3669216	3669242	+	asmbl_53894	none	STRG.10965.3	1	Trinity_GG_6105_c0_g1_i1,blat.proc3829875.chain_3447	2
scaffold_21	retained_exon	8973582	8973638	-	asmbl_27966,asmbl_27967	none	STRG.24397.1,STRG.24397.3,blat.proc3829899.chain_1462,blat.proc3829899.chain_1464	4	STRG.24397.2,blat.proc3829899.chain_1461,blat.proc3829899.chain_1463	3
scaffold_16	alternate_exon	6147933	6149545	+	asmbl_17072,asmbl_17075	none	blat.proc3829881.chain_208,blat.proc3829881.chain_214	2	STRG.19342.2,STRG.19342.3,STRG.19342.4,blat.proc3829881.chain_210	4
scaffold_18	starts_in_intron	8402574	8402574	+	asmbl_20858	none	STRG.21503.5,blat.proc3829881.chain_2514	2	STRG.21503.1,STRG.21503.2,STRG.21503.3,STRG.21503.4,blat.proc3829881.chain_2515,blat.proc3829881.chain_2516	6
scaffold_7	alt_acceptor	3432021	3432022	+	asmbl_50569	none	STRG.8740.2	1	STRG.8740.1,blat.proc3829875.chain_1168	2
scaffold_15	retained_exon	15856434	15856547	+	asmbl_14772,asmbl_14774,asmbl_14777,asmbl_14778,asmbl_14781	none	STRG.18964.2,STRG.18964.4,STRG.18964.6,Trinity_GG_10383_c0_g1_i2,Trinity_GG_10383_c0_g1_i3,Trinity_GG_10383_c0_g1_i8,blat.proc3829879.chain_3539,blat.proc3829879.chain_3541,blat.proc3829879.chain_3542,blat.proc3829879.chain_3544	10	STRG.18964.1,STRG.18964.3,STRG.18964.5,Trinity_GG_10383_c0_g1_i7,blat.proc3829879.chain_3538,blat.proc3829879.chain_3540	6
scaffold_11	starts_in_intron	5257699	5257699	+	asmbl_5522	none	Trinity_GG_7479_c0_g1_i1	1	STRG.13602.1,STRG.13602.2,STRG.13602.5	3
scaffold_5	retained_intron	4696342	4696551	+	asmbl_43951	none	STRG.5917.1	1	blat.proc3829873.chain_2094	1
scaffold_2	alt_donor	796761	796762	+	asmbl_24125	none	STRG.1556.1,Trinity_GG_878_c0_g1_i2	2	STRG.1556.2	1
scaffold_6	alt_donor	7285973	7285974	-	asmbl_48426	none	STRG.7626.1,blat.proc3829889.chain_3658	2	STRG.7626.2	1
scaffold_6	skipped_exon	13059727	13060614	-	asmbl_48812	none	STRG.8056.3	1	STRG.8056.1,STRG.8056.2,STRG.8056.4,blat.proc3829891.chain_351	4
scaffold_10	spliced_intron	3714042	3714121	+	asmbl_4342	none	STRG.12190.2	1	STRG.12190.1,blat.proc3829877.chain_863,blat.proc3829877.chain_864	3
scaffold_5	alt_acceptor	3630369	3630370	+	asmbl_43894	none	STRG.5828.2	1	STRG.5828.1	1
scaffold_11	retained_intron	2061239	2061594	+	asmbl_5310,asmbl_5311	none	STRG.13352.2,Trinity_GG_7338_c0_g1_i6,blat.proc3829877.chain_1843,blat.proc3829877.chain_1844,blat.proc3829877.chain_1846	5	STRG.13352.1	1
scaffold_19	retained_intron	13224244	13224327	-	asmbl_21845	none	blat.proc3829897.chain_3360	1	STRG.22682.1,STRG.22682.3,Trinity_GG_29598_c1_g1_i4,Trinity_GG_29598_c1_g1_i7,blat.proc3829897.chain_3359,blat.proc3829897.chain_3363,blat.proc3829897.chain_3366,blat.proc3829897.chain_3368,blat.proc3829897.chain_3370	9
scaffold_22	starts_in_intron	4345833	4345833	+	asmbl_29275	none	STRG.24835.2,blat.proc3829883.chain_1862	2	STRG.24835.1,blat.proc3829883.chain_1864	2
scaffold_6	ends_in_intron	8305434	8305434	+	asmbl_47056	none	blat.proc3829875.chain_55	1	STRG.7704.1,blat.proc3829875.chain_54	2
scaffold_18	retained_exon	1512896	1512941	+	asmbl_20384	none	STRG.21033.3	1	STRG.21033.1,STRG.21033.2,blat.proc3829881.chain_1931	3
scaffold_9	alt_donor	3676840	3676841	-	asmbl_54885,asmbl_54891	none	STRG.10971.1,blat.proc3829891.chain_3074,blat.proc3829891.chain_3084,blat.proc3829891.chain_3085	4	STRG.10971.3,Trinity_GG_23073_c0_g1_i12,Trinity_GG_23073_c0_g1_i14,blat.proc3829891.chain_3075,blat.proc3829891.chain_3079	5
scaffold_9	retained_intron	16656048	16656688	-	asmbl_55566	none	blat.proc3829893.chain_210	1	STRG.11803.1,STRG.11803.2,STRG.11803.3,STRG.11803.4,blat.proc3829893.chain_209,blat.proc3829893.chain_211,blat.proc3829893.chain_212,blat.proc3829893.chain_213	8
scaffold_25	alt_acceptor	337724	337725	+	asmbl_33317	none	STRG.27057.2	1	STRG.27057.1	1
scaffold_4	retained_intron	17805603	17806025	+	asmbl_43416	none	blat.proc3829873.chain_1626	1	blat.proc3829873.chain_1627	1
scaffold_7	alt_acceptor	8827374	8827375	-	asmbl_49849	none	STRG.9110.1,blat.proc3829891.chain_1354	2	STRG.9110.2	1
scaffold_6	alternate_exon	12495507	12497977	+	asmbl_47351	none	blat.proc3829875.chain_347	1	STRG.8005.3,blat.proc3829875.chain_349	2
scaffold_6	skipped_exon	4279650	4280395	-	asmbl_48247	none	STRG.7397.2	1	STRG.7397.1,Trinity_GG_21148_c0_g1_i3,blat.proc3829889.chain_3380,blat.proc3829889.chain_3382	4
scaffold_19	retained_intron	12491982	12492152	+	asmbl_22615	none	STRG.22568.3,blat.proc3829881.chain_3534	2	STRG.22568.5,blat.proc3829881.chain_3533	2
scaffold_18	ends_in_intron	2833208	2833208	+	asmbl_20447	none	blat.proc3829881.chain_1924	1	STRG.21133.1,STRG.21133.2,blat.proc3829881.chain_1915,blat.proc3829881.chain_1916,blat.proc3829881.chain_1923	5
scaffold_6	retained_exon	14900005	14900184	+	asmbl_47585	none	STRG.8258.3,blat.proc3829875.chain_678	2	STRG.8258.1,Trinity_GG_4552_c0_g1_i2,blat.proc3829875.chain_675	3
scaffold_3	alternate_exon	10937137	10937191	-	asmbl_39078	none	STRG.3534.3	1	STRG.3534.1,STRG.3534.2,STRG.3534.4,blat.proc3829887.chain_3294,blat.proc3829887.chain_3295	5
scaffold_10	starts_in_intron	566348	566348	-	asmbl_2889	none	blat.proc3829893.chain_374	1	STRG.11930.1,blat.proc3829893.chain_375	2
scaffold_17	alternate_exon	11038544	11039046	-	asmbl_19315	none	STRG.20653.6	1	STRG.20653.5,STRG.20653.7,Trinity_GG_28603_c1_g1_i1,blat.proc3829897.chain_1558,blat.proc3829897.chain_1559,blat.proc3829897.chain_1563	6
scaffold_11	alt_donor	171511	171512	+	asmbl_5216	none	STRG.13231.1	1	STRG.13231.2,STRG.13231.4,STRG.13231.5	3
scaffold_11	alternate_exon	8719066	8719313	-	asmbl_6857	none	Trinity_GG_24779_c0_g2_i2,blat.proc3829893.chain_2335	2	STRG.13887.1,blat.proc3829893.chain_2332,blat.proc3829893.chain_2333	3
scaffold_15	retained_intron	4492518	4492646	+	asmbl_14084	none	blat.proc3829879.chain_2747	1	STRG.18165.1,STRG.18165.2,blat.proc3829879.chain_2746,blat.proc3829879.chain_2748,blat.proc3829879.chain_2749,blat.proc3829879.chain_2750	6
scaffold_13	alt_acceptor	12019069	12019070	-	asmbl_10086	none	STRG.16321.1	1	STRG.16321.2	1
scaffold_11	starts_in_intron	8478185	8478185	+	asmbl_5750	none	Trinity_GG_7647_c0_g1_i3,blat.proc3829877.chain_2363	2	STRG.13851.2,Trinity_GG_7647_c0_g1_i2,blat.proc3829877.chain_2360	3
scaffold_16	spliced_intron	8088050	8088183	-	asmbl_16404,asmbl_16405,asmbl_16410	none	STRG.19441.1,blat.proc3829897.chain_446,blat.proc3829897.chain_447,blat.proc3829897.chain_449	4	Trinity_GG_27908_c0_g2_i6,blat.proc3829897.chain_448	2
scaffold_6	starts_in_intron	9911089	9911089	+	asmbl_47183	none	STRG.7827.5,blat.proc3829875.chain_136	2	STRG.7827.1,STRG.7827.2,STRG.7827.4	3
scaffold_2	spliced_intron	6520144	6520227	+	asmbl_24498,asmbl_24499,asmbl_24500,asmbl_24501,asmbl_24503	none	STRG.2022.1,STRG.2022.2,STRG.2022.3,STRG.2022.4,STRG.2022.5,Trinity_GG_1139_c0_g1_i2,blat.proc3829871.chain_2079	7	Trinity_GG_1139_c0_g1_i1,blat.proc3829871.chain_2078	2
scaffold_3	retained_exon	1424721	1424841	-	asmbl_38663	none	STRG.2958.2	1	STRG.2958.3,blat.proc3829887.chain_2734	2
scaffold_1	retained_intron	14358804	14358965	+	asmbl_2365,asmbl_2366,asmbl_2367,asmbl_2369	none	STRG.1032.1,STRG.1032.2,Trinity_GG_620_c0_g1_i4,blat.proc3829871.chain_1120,blat.proc3829871.chain_1121,blat.proc3829871.chain_1123	6	blat.proc3829871.chain_1122	1
scaffold_5	starts_in_intron	18575972	18575972	+	asmbl_44929	none	Trinity_GG_3827_c0_g1_i2,blat.proc3829873.chain_3101	2	STRG.6982.1,Trinity_GG_3827_c0_g1_i3,blat.proc3829873.chain_3099,blat.proc3829873.chain_3100	4
scaffold_19	spliced_intron	12822377	12822631	-	asmbl_21756,asmbl_21757,asmbl_21759,asmbl_21760,asmbl_21764	none	STRG.22593.1,STRG.22593.2,STRG.22593.3,blat.proc3829897.chain_3274,blat.proc3829897.chain_3275,blat.proc3829897.chain_3278,blat.proc3829897.chain_3279	7	blat.proc3829897.chain_3277	1
scaffold_21	starts_in_intron	679503	679503	-	asmbl_27369,asmbl_27370	none	STRG.23740.3,STRG.23740.5	2	STRG.23740.2,STRG.23740.4,blat.proc3829899.chain_802,blat.proc3829899.chain_803	4
scaffold_8	skipped_exon	10482617	10484569	+	asmbl_52159	none	STRG.10277.2,blat.proc3829875.chain_2785	2	STRG.10277.1,blat.proc3829875.chain_2784,blat.proc3829875.chain_2786	3
scaffold_7	starts_in_intron	8710753	8710753	-	asmbl_49843	none	Trinity_GG_22154_c0_g1_i5,blat.proc3829891.chain_1360	2	STRG.9102.1,STRG.9102.2,blat.proc3829891.chain_1361,blat.proc3829891.chain_1363	4
scaffold_2	retained_intron	9191729	9191859	-	asmbl_23379	none	Trinity_GG_18242_c0_g1_i12,blat.proc3829887.chain_2103	2	STRG.2167.1,STRG.2167.2,Trinity_GG_18242_c0_g1_i1,Trinity_GG_18242_c0_g1_i2,Trinity_GG_18242_c0_g1_i3,Trinity_GG_18242_c0_g1_i4,Trinity_GG_18242_c0_g1_i7,blat.proc3829887.chain_2099,blat.proc3829887.chain_2100,blat.proc3829887.chain_2101,blat.proc3829887.chain_2102,blat.proc3829887.chain_2104	12
scaffold_8	starts_in_intron	4336001	4336001	+	asmbl_51825	none	blat.proc3829875.chain_2387	1	STRG.9912.1,STRG.9912.2,STRG.9912.3,blat.proc3829875.chain_2388,blat.proc3829875.chain_2389,blat.proc3829875.chain_2390	6
scaffold_14	spliced_intron	1094343	1094586	+	asmbl_11777	none	STRG.16756.1,blat.proc3829879.chain_1479	2	STRG.16756.3,blat.proc3829879.chain_1478	2
scaffold_26	alternate_exon	2249423	2249641	+	asmbl_35265,asmbl_35268	none	STRG.27939.1,blat.proc3829885.chain_934,blat.proc3829885.chain_935	3	STRG.27939.2	1
scaffold_3	skipped_exon	11644642	11645915	+	asmbl_40323	none	blat.proc3829873.chain_5	1	STRG.3594.1,blat.proc3829873.chain_4	2
scaffold_9	alt_donor	9853052	9853053	+	asmbl_54253	none	STRG.11344.3	1	STRG.11344.1,blat.proc3829877.chain_63,blat.proc3829877.chain_67	3
scaffold_9	alt_acceptor	560242	560243	+	asmbl_53746	none	STRG.10777.2,blat.proc3829875.chain_3280	2	STRG.10777.1,blat.proc3829875.chain_3279	2
scaffold_12	alt_donor	5566507	5566508	-	asmbl_7636	none	STRG.14699.2,blat.proc3829893.chain_3116	2	STRG.14699.1,blat.proc3829893.chain_3115	2
scaffold_16	alt_acceptor	11930745	11930746	-	asmbl_16553	none	STRG.19705.1,blat.proc3829897.chain_676	2	STRG.19705.2	1
scaffold_10	spliced_intron	6466373	6466479	-	asmbl_3380,asmbl_3382,asmbl_3383,asmbl_3385	none	blat.proc3829893.chain_940,blat.proc3829893.chain_942,blat.proc3829893.chain_943,blat.proc3829893.chain_945	4	blat.proc3829893.chain_941,blat.proc3829893.chain_944	2
scaffold_8	ends_in_intron	12340674	12340674	-	asmbl_53199	none	STRG.10403.2	1	STRG.10403.1,Trinity_GG_22760_c0_g1_i2,blat.proc3829891.chain_2474	3
scaffold_18	starts_in_intron	7536396	7536396	+	asmbl_20778	none	blat.proc3829881.chain_2406	1	STRG.21449.2,blat.proc3829881.chain_2407	2
scaffold_10	ends_in_intron	5539213	5539213	-	asmbl_3288	none	Trinity_GG_23912_c0_g2_i1,blat.proc3829893.chain_819	2	STRG.12364.1	1
scaffold_7	skipped_exon	689261	689739	+	asmbl_50438	none	STRG.8594.4	1	STRG.8594.2	1
scaffold_21	alt_acceptor	4593910	4593911	+	asmbl_28546	none	STRG.23996.3,blat.proc3829883.chain_1115	2	STRG.23996.2	1
scaffold_14	alt_acceptor	13906532	13906533	+	asmbl_12502	none	STRG.17656.3,blat.proc3829879.chain_2333	2	blat.proc3829879.chain_2334	1
scaffold_21	alt_donor	6988488	6988489	-	asmbl_27795	none	STRG.24212.2,blat.proc3829899.chain_1235	2	STRG.24212.1,blat.proc3829899.chain_1233	2
scaffold_20	retained_exon	10113960	10113999	-	asmbl_27006,asmbl_27007,asmbl_27008	none	STRG.23549.1,STRG.23549.2,blat.proc3829899.chain_564,blat.proc3829899.chain_565,blat.proc3829899.chain_567	5	STRG.23549.3	1
scaffold_23	ends_in_intron	3510375	3510375	-	asmbl_31523	none	Trinity_GG_31429_c0_g1_i1,blat.proc3829899.chain_2891	2	STRG.25754.2,blat.proc3829899.chain_2895	2
scaffold_24	alternate_exon	6722963	6726452	-	asmbl_32955,asmbl_32956,asmbl_32959	none	STRG.26704.1,STRG.26704.2,blat.proc3829901.chain_21,blat.proc3829901.chain_22,blat.proc3829901.chain_25	5	blat.proc3829901.chain_20	1
scaffold_14	retained_intron	208851	208933	-	asmbl_12781	none	Trinity_GG_26362_c0_g1_i2,blat.proc3829895.chain_1402	2	STRG.16702.1,STRG.16702.3,STRG.16702.4,STRG.16702.5,Trinity_GG_26362_c0_g1_i3,Trinity_GG_26362_c0_g1_i4,Trinity_GG_26362_c0_g1_i5,blat.proc3829895.chain_1403,blat.proc3829895.chain_1404,blat.proc3829895.chain_1405	10
scaffold_6	retained_exon	9134985	9135029	+	asmbl_47143,asmbl_47144,asmbl_47146	none	STRG.7784.4,blat.proc3829875.chain_197,blat.proc3829875.chain_203,blat.proc3829875.chain_204	4	STRG.7784.1,STRG.7784.2,STRG.7784.3,blat.proc3829875.chain_195,blat.proc3829875.chain_198,blat.proc3829875.chain_201,blat.proc3829875.chain_202	7
scaffold_19	skipped_exon	8180860	8182966	+	asmbl_22302	none	STRG.22257.1	1	blat.proc3829881.chain_3128	1
scaffold_4	skipped_exon	16881837	16883545	-	asmbl_41983	none	STRG.5276.1,Trinity_GG_19953_c0_g1_i1,blat.proc3829889.chain_1320	3	STRG.5276.2	1
scaffold_5	retained_intron	4866969	4867162	+	asmbl_43974	none	Trinity_GG_3273_c0_g1_i2,blat.proc3829873.chain_2135	2	STRG.5938.1,STRG.5938.3,blat.proc3829873.chain_2134,blat.proc3829873.chain_2136,blat.proc3829873.chain_2137	5
scaffold_16	starts_in_intron	1805175	1805175	+	asmbl_16889	none	blat.proc3829879.chain_3706	1	STRG.19094.1,blat.proc3829879.chain_3707	2
scaffold_24	retained_intron	5244901	5245095	-	asmbl_32872	none	STRG.26595.2	1	STRG.26595.1,blat.proc3829899.chain_3664	2
scaffold_4	alternate_exon	12832558	12832735	+	asmbl_43096	none	STRG.4926.1,blat.proc3829873.chain_1254	2	STRG.4926.2,Trinity_GG_2743_c0_g1_i1,blat.proc3829873.chain_1253	3
scaffold_17	spliced_intron	8318266	8318617	+	asmbl_18093,asmbl_18095,asmbl_18096	none	STRG.20443.1,STRG.20443.3,Trinity_GG_11211_c0_g1_i1,blat.proc3829881.chain_1252	4	blat.proc3829881.chain_1249	1
scaffold_7	retained_intron	13221544	13221715	+	asmbl_51209,asmbl_51211	none	STRG.9423.1,Trinity_GG_5240_c0_g1_i1,blat.proc3829875.chain_1891	3	STRG.9423.2,Trinity_GG_5240_c0_g1_i2,blat.proc3829875.chain_1892	3
scaffold_13	alt_acceptor	5815163	5815164	+	asmbl_10880,asmbl_10882	none	STRG.15880.1,STRG.15880.4	2	STRG.15880.3	1
scaffold_9	spliced_intron	14817657	14817774	-	asmbl_55463,asmbl_55467	none	STRG.11693.3,STRG.11693.6,blat.proc3829893.chain_6	3	STRG.11693.2,Trinity_GG_23432_c0_g1_i6,blat.proc3829893.chain_9	3
scaffold_7	alternate_exon	10552857	10552932	+	asmbl_51012	none	STRG.9220.2,Trinity_GG_5068_c0_g1_i1,blat.proc3829875.chain_1593	3	STRG.9220.1	1
scaffold_3	alternate_exon	6189135	6189687	-	asmbl_38867	none	STRG.3262.4	1	STRG.3262.3,blat.proc3829887.chain_3014	2
scaffold_7	alt_acceptor	12346574	12346575	+	asmbl_51125	none	STRG.9317.2	1	STRG.9317.1,blat.proc3829875.chain_1785	2
scaffold_16	retained_intron	6135129	6135279	+	asmbl_17068	none	blat.proc3829881.chain_199	1	STRG.19335.1,STRG.19335.2,blat.proc3829881.chain_197,blat.proc3829881.chain_198	4
scaffold_7	retained_intron	13809676	13810427	+	asmbl_51258	none	STRG.9479.2,Trinity_GG_5246_c2_g1_i1,blat.proc3829875.chain_1904	3	STRG.9479.4	1
scaffold_9	alternate_exon	17583155	17583238	-	asmbl_55621	none	STRG.11836.2	1	STRG.11836.1	1
scaffold_16	alt_donor	2386342	2386343	-	asmbl_16137	none	STRG.19122.3	1	STRG.19122.2	1
scaffold_8	spliced_intron	9872527	9872652	-	asmbl_53055	none	STRG.10226.1,blat.proc3829891.chain_2378	2	blat.proc3829891.chain_2379	1
scaffold_21	spliced_intron	7600965	7601224	+	asmbl_28768	none	STRG.24282.2,blat.proc3829883.chain_1429	2	STRG.24282.3,blat.proc3829883.chain_1431	2
scaffold_15	retained_intron	15416433	15416546	-	asmbl_15795	none	blat.proc3829895.chain_3620	1	STRG.18923.5,blat.proc3829895.chain_3621	2
scaffold_27	retained_intron	2998561	2998674	+	asmbl_36112,asmbl_36116	none	Trinity_GG_15918_c0_g1_i12,blat.proc3829885.chain_1840,blat.proc3829885.chain_1845	3	STRG.28767.1,STRG.28767.2,STRG.28767.3,STRG.28767.4,STRG.28767.5,blat.proc3829885.chain_1839,blat.proc3829885.chain_1841,blat.proc3829885.chain_1842,blat.proc3829885.chain_1843,blat.proc3829885.chain_1844,blat.proc3829885.chain_1847,blat.proc3829885.chain_1848,blat.proc3829885.chain_1849	13
scaffold_17	alt_acceptor	11611613	11611614	-	asmbl_19342	none	STRG.20704.2,blat.proc3829897.chain_1653	2	STRG.20704.1,blat.proc3829897.chain_1654	2
scaffold_7	ends_in_intron	16139262	16139262	-	asmbl_50221	none	blat.proc3829891.chain_1806	1	STRG.9566.1,blat.proc3829891.chain_1805	2
scaffold_2	alt_donor	6211412	6211413	-	asmbl_23213	none	blat.proc3829887.chain_1785	1	STRG.1985.1,STRG.1985.2,blat.proc3829887.chain_1787	3
scaffold_17	spliced_intron	5138001	5138143	-	asmbl_18960	none	STRG.20232.1,blat.proc3829897.chain_1207	2	STRG.20232.4,blat.proc3829897.chain_1208	2
scaffold_8	ends_in_intron	14571209	14571209	+	asmbl_52373	none	blat.proc3829875.chain_3059	1	STRG.10535.2,STRG.10535.3,blat.proc3829875.chain_3058	3
scaffold_7	alt_acceptor	11873338	11873339	-	asmbl_49983,asmbl_49986	none	STRG.9297.2,Trinity_GG_22229_c0_g1_i5,blat.proc3829891.chain_1490	3	STRG.9297.1	1
scaffold_27	starts_in_intron	4000613	4000613	+	asmbl_36213	none	blat.proc3829885.chain_1935	1	STRG.28848.2,Trinity_GG_15970_c0_g1_i5,blat.proc3829885.chain_1937,blat.proc3829885.chain_1938,blat.proc3829885.chain_1939	5
scaffold_21	alt_acceptor	9925341	9925342	-	asmbl_28014	none	STRG.24446.6	1	STRG.24446.1,STRG.24446.4,blat.proc3829899.chain_1513	3
scaffold_2	spliced_intron	12645103	12645138	-	asmbl_23483	none	STRG.2308.1	1	STRG.2308.2	1
scaffold_5	retained_exon	2167666	2167719	-	asmbl_45266	none	STRG.5744.3	1	STRG.5744.2	1
scaffold_1	alt_donor	5698152	5698153	+	asmbl_1744	none	STRG.362.1,Trinity_GG_238_c0_g1_i1,blat.proc3829871.chain_416	3	STRG.362.2	1
scaffold_13	starts_in_intron	7956411	7956411	+	asmbl_11068	none	STRG.16061.2,Trinity_GG_8812_c2_g1_i1,blat.proc3829879.chain_753	3	STRG.16061.1,blat.proc3829879.chain_751	2
scaffold_5	spliced_intron	14262861	14263018	+	asmbl_44583,asmbl_44586,asmbl_44590	none	STRG.6629.1,STRG.6629.3,blat.proc3829873.chain_2764,blat.proc3829873.chain_2769,blat.proc3829873.chain_2771	5	blat.proc3829873.chain_2765,blat.proc3829873.chain_2770	2
scaffold_25	alternate_exon	9445695	9445800	+	asmbl_33807,asmbl_33809	none	STRG.27744.1,blat.proc3829885.chain_732,blat.proc3829885.chain_734	3	blat.proc3829885.chain_733	1
scaffold_10	starts_in_intron	13788656	13788656	+	asmbl_4891	none	STRG.12969.4	1	STRG.12969.1	1
scaffold_13	alt_acceptor	14175939	14175940	+	asmbl_11416	none	Trinity_GG_9054_c0_g1_i5,blat.proc3829879.chain_1196	2	STRG.16449.1,Trinity_GG_9054_c0_g1_i3,Trinity_GG_9054_c0_g1_i7,blat.proc3829879.chain_1192,blat.proc3829879.chain_1195	5
scaffold_2	alternate_exon	10910031	10912009	-	asmbl_23455	none	STRG.2249.1,blat.proc3829887.chain_2167	2	STRG.2249.2,blat.proc3829887.chain_2166	2
scaffold_1	spliced_intron	5624546	5624630	-	asmbl_284	none	STRG.350.1,blat.proc3829887.chain_211	2	blat.proc3829887.chain_210	1
scaffold_13	retained_intron	352660	353097	-	asmbl_9274	none	blat.proc3829895.chain_173,blat.proc3829895.chain_174	2	STRG.15424.1,Trinity_GG_25667_c0_g1_i10,Trinity_GG_25667_c0_g1_i4,Trinity_GG_25667_c0_g1_i5,Trinity_GG_25667_c0_g1_i6,Trinity_GG_25667_c0_g1_i7,Trinity_GG_25667_c0_g1_i8,blat.proc3829895.chain_167,blat.proc3829895.chain_168,blat.proc3829895.chain_169,blat.proc3829895.chain_170,blat.proc3829895.chain_171,blat.proc3829895.chain_172	13
scaffold_3	starts_in_intron	14301785	14301785	-	asmbl_39294	none	Trinity_GG_19091_c0_g1_i2,blat.proc3829887.chain_3548	2	STRG.3767.1,Trinity_GG_19091_c0_g1_i3,blat.proc3829887.chain_3549	3
scaffold_3	ends_in_intron	13720304	13720304	-	asmbl_39244	none	Trinity_GG_19028_c0_g1_i3,blat.proc3829887.chain_3448	2	STRG.3718.1,Trinity_GG_19028_c0_g1_i2,Trinity_GG_19028_c0_g1_i5,blat.proc3829887.chain_3445,blat.proc3829887.chain_3446	5
scaffold_3	starts_in_intron	18029717	18029717	+	asmbl_40681	none	blat.proc3829873.chain_389	1	STRG.4004.1,blat.proc3829873.chain_390	2
scaffold_21	spliced_intron	7507874	7507982	-	asmbl_27855	none	STRG.24270.1,blat.proc3829899.chain_1282	2	Trinity_GG_30512_c0_g1_i1,blat.proc3829899.chain_1281	2
scaffold_9	spliced_intron	6903544	6903648	-	asmbl_55047,asmbl_55048,asmbl_55049,asmbl_55050,asmbl_55051,asmbl_55052,asmbl_55053,asmbl_55054,asmbl_55055,asmbl_55056,asmbl_55058	none	STRG.11191.1,STRG.11191.2,STRG.11191.3,STRG.11191.5,blat.proc3829891.chain_3366,blat.proc3829891.chain_3367,blat.proc3829891.chain_3368,blat.proc3829891.chain_3369,blat.proc3829891.chain_3370,blat.proc3829891.chain_3371,blat.proc3829891.chain_3372,blat.proc3829891.chain_3373,blat.proc3829891.chain_3374,blat.proc3829891.chain_3375	14	STRG.11191.4	1
scaffold_3	alt_acceptor	17834086	17834087	+	asmbl_40661	none	STRG.3994.2	1	STRG.3994.1,blat.proc3829873.chain_397,blat.proc3829873.chain_398,blat.proc3829873.chain_400	4
scaffold_3	alt_acceptor	14479787	14479788	+	asmbl_40489	none	STRG.3787.2,Trinity_GG_2129_c0_g1_i2,blat.proc3829873.chain_201,blat.proc3829873.chain_202	4	STRG.3787.1,blat.proc3829873.chain_203	2
scaffold_9	starts_in_intron	11828975	11828975	-	asmbl_55284	none	blat.proc3829891.chain_3583	1	STRG.11487.1,STRG.11487.2,blat.proc3829891.chain_3582	3
scaffold_1555	alternate_exon	996	1078	-	asmbl_15982	none	STRG.30598.4	1	STRG.30598.1	1
scaffold_9	starts_in_intron	11852039	11852039	-	asmbl_55303	none	blat.proc3829891.chain_3612	1	STRG.11492.2,blat.proc3829891.chain_3609	2
scaffold_21	ends_in_intron	710284	710284	-	asmbl_27381	none	Trinity_GG_30242_c0_g1_i11,blat.proc3829899.chain_816	2	STRG.23751.1,Trinity_GG_30242_c0_g1_i5,Trinity_GG_30242_c0_g1_i8,blat.proc3829899.chain_811,blat.proc3829899.chain_813,blat.proc3829899.chain_815	6
scaffold_3	alt_donor	17535638	17535639	-	asmbl_39519	none	STRG.3987.1	1	STRG.3987.2,STRG.3987.3,STRG.3987.4,blat.proc3829889.chain_89,blat.proc3829889.chain_90,blat.proc3829889.chain_91,blat.proc3829889.chain_92	7
scaffold_10	retained_exon	2675550	2675608	+	asmbl_4270,asmbl_4272	none	STRG.12077.2,STRG.12077.3,blat.proc3829877.chain_790	3	STRG.12077.1	1
scaffold_8	starts_in_intron	11849831	11849831	+	asmbl_52271,asmbl_52272,asmbl_52273	none	blat.proc3829875.chain_2966,blat.proc3829875.chain_2971,blat.proc3829875.chain_2980	3	STRG.10382.2,STRG.10382.3,blat.proc3829875.chain_2967,blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2975,blat.proc3829875.chain_2976,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978,blat.proc3829875.chain_2979	13
scaffold_16	spliced_intron	6196265	6196569	+	asmbl_17084,asmbl_17085,asmbl_17091,asmbl_17093	none	STRG.19373.1,STRG.19373.2,blat.proc3829881.chain_125,blat.proc3829881.chain_127,blat.proc3829881.chain_130,blat.proc3829881.chain_131	6	STRG.19373.3,STRG.19373.4,blat.proc3829881.chain_126,blat.proc3829881.chain_128,blat.proc3829881.chain_129	5
scaffold_1	retained_intron	15888360	15889037	+	asmbl_2436	none	STRG.1117.2,blat.proc3829871.chain_1169	2	Trinity_GG_643_c0_g1_i2,blat.proc3829871.chain_1171	2
scaffold_18	alt_donor	4712320	4712321	-	asmbl_19857	none	STRG.21254.2	1	STRG.21254.1	1
scaffold_20	skipped_exon	2763173	2765473	-	asmbl_26597	none	STRG.23004.4	1	STRG.23004.5	1
scaffold_1	starts_in_intron	12792149	12792149	-	asmbl_771	none	blat.proc3829887.chain_767	1	STRG.898.1,STRG.898.3,blat.proc3829887.chain_768,blat.proc3829887.chain_769	4
scaffold_6	alternate_exon	3386885	3388507	-	asmbl_48200,asmbl_48203	none	STRG.7343.1,blat.proc3829889.chain_3338,blat.proc3829889.chain_3339	3	STRG.7343.2,blat.proc3829889.chain_3337	2
scaffold_2	retained_intron	13961990	13962517	-	asmbl_23565	none	STRG.2384.2,blat.proc3829887.chain_2237	2	STRG.2384.1,blat.proc3829887.chain_2238	2
scaffold_2	retained_intron	9791343	9791807	+	asmbl_24723,asmbl_24724	none	blat.proc3829871.chain_2219,blat.proc3829871.chain_2220	2	STRG.2185.1,Trinity_GG_1191_c0_g1_i6,blat.proc3829871.chain_2216,blat.proc3829871.chain_2217,blat.proc3829871.chain_2218,blat.proc3829871.chain_2221,blat.proc3829871.chain_2222	7
scaffold_17	skipped_exon	9531820	9532877	+	asmbl_18228,asmbl_18233	none	STRG.20566.3,Trinity_GG_11250_c0_g1_i3,blat.proc3829881.chain_1351	3	STRG.20566.1,STRG.20566.2,Trinity_GG_11250_c0_g1_i4,Trinity_GG_11250_c0_g1_i7,blat.proc3829881.chain_1350,blat.proc3829881.chain_1352	6
scaffold_1	retained_exon	22372256	22372307	+	asmbl_2677,asmbl_2678	none	STRG.1490.3,STRG.1490.5	2	STRG.1490.2,STRG.1490.4	2
scaffold_24	starts_in_intron	5941942	5941942	+	asmbl_32273	none	STRG.26645.2	1	STRG.26645.1,blat.proc3829883.chain_3535,blat.proc3829883.chain_3537,blat.proc3829883.chain_3539,blat.proc3829883.chain_3542,blat.proc3829883.chain_3543,blat.proc3829883.chain_3544,blat.proc3829883.chain_3545,blat.proc3829883.chain_3547,blat.proc3829883.chain_3548,blat.proc3829883.chain_3549	11
scaffold_10	alternate_exon	8316060	8316326	-	asmbl_3489	none	STRG.12583.1	1	STRG.12583.2	1
scaffold_6	alternate_exon	885370	885770	-	asmbl_48034	none	blat.proc3829889.chain_3164	1	STRG.7153.3	1
scaffold_14	alternate_exon	13646344	13646368	-	asmbl_13639	none	STRG.17648.2	1	STRG.17648.1,blat.proc3829895.chain_2399	2
scaffold_7	spliced_intron	11146814	11146910	+	asmbl_51030,asmbl_51032,asmbl_51035	none	STRG.9251.1,blat.proc3829875.chain_1725,blat.proc3829875.chain_1726,blat.proc3829875.chain_1729	4	STRG.9251.2,blat.proc3829875.chain_1727,blat.proc3829875.chain_1728,blat.proc3829875.chain_1730	4
scaffold_6	retained_intron	8643223	8643316	+	asmbl_47105	none	blat.proc3829875.chain_104	1	STRG.7737.3,blat.proc3829875.chain_103	2
scaffold_1	starts_in_intron	18279861	18279861	-	asmbl_1097	none	STRG.1276.2	1	blat.proc3829887.chain_1184	1
scaffold_1	alt_donor	1041790	1041791	+	asmbl_1449	none	STRG.62.2,blat.proc3829871.chain_11	2	STRG.62.4	1
scaffold_20	starts_in_intron	3070271	3070271	+	asmbl_25672	none	blat.proc3829883.chain_135	1	STRG.23028.1	1
scaffold_23	spliced_intron	10990900	10990994	-	asmbl_31899	none	STRG.26288.2	1	blat.proc3829899.chain_3315	1
scaffold_531	alternate_exon	1153	1208	-	asmbl_46495	none	STRG.30334.2	1	STRG.30334.1	1
scaffold_2	spliced_intron	2542873	2542935	-	asmbl_22927	none	STRG.1696.2	1	STRG.1696.1,STRG.1696.3,blat.proc3829887.chain_1538,blat.proc3829887.chain_1540	4
scaffold_13	ends_in_intron	7719760	7719760	-	asmbl_9868	none	blat.proc3829895.chain_747	1	STRG.16043.1,STRG.16043.2,Trinity_GG_26001_c0_g1_i3,blat.proc3829895.chain_745,blat.proc3829895.chain_746	5
scaffold_2	spliced_intron	885176	885305	+	asmbl_24142,asmbl_24144,asmbl_24145	none	STRG.1563.2,STRG.1563.3,blat.proc3829871.chain_1566	3	blat.proc3829871.chain_1567	1
scaffold_15	retained_exon	7182916	7182948	-	asmbl_15295	none	STRG.18300.2,blat.proc3829895.chain_2965	2	STRG.18300.1,STRG.18300.4,blat.proc3829895.chain_2962,blat.proc3829895.chain_2964	4
scaffold_8	retained_intron	4194620	4194679	-	asmbl_52752	none	STRG.9887.1	1	STRG.9887.2	1
scaffold_5	spliced_intron	4696342	4696551	+	asmbl_43949	none	blat.proc3829873.chain_2094	1	STRG.5917.1	1
scaffold_6	starts_in_intron	128383	128383	-	asmbl_47967	none	blat.proc3829889.chain_3044	1	STRG.7069.1,blat.proc3829889.chain_3043	2
scaffold_23	ends_in_intron	2587070	2587070	-	asmbl_31464	none	blat.proc3829899.chain_2748	1	STRG.25705.2,blat.proc3829899.chain_2749	2
scaffold_10	alternate_exon	2672309	2672666	+	asmbl_4268	none	STRG.12076.2,blat.proc3829877.chain_779	2	STRG.12076.1	1
scaffold_8	spliced_intron	11278487	11279101	-	asmbl_53142,asmbl_53143	none	STRG.10339.3,STRG.10339.4,blat.proc3829891.chain_2439,blat.proc3829891.chain_2440	4	STRG.10339.1,STRG.10339.2,blat.proc3829891.chain_2438	3
scaffold_2	alt_donor	1258320	1258321	-	asmbl_22864	none	STRG.1588.1	1	blat.proc3829871.chain_1675	1
scaffold_8	spliced_intron	11852641	11853028	+	asmbl_52267,asmbl_52269,asmbl_52270,asmbl_52276,asmbl_52277,asmbl_52278,asmbl_52280	none	STRG.10382.3,STRG.10382.4,blat.proc3829875.chain_2967,blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2972,blat.proc3829875.chain_2975,blat.proc3829875.chain_2979	8	STRG.10382.2,blat.proc3829875.chain_2966,blat.proc3829875.chain_2970,blat.proc3829875.chain_2971,blat.proc3829875.chain_2973,blat.proc3829875.chain_2976,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978	8
scaffold_16	alt_donor	3829275	3829276	-	asmbl_16176	none	STRG.19178.1	1	STRG.19178.2	1
scaffold_19	ends_in_intron	12108264	12108264	-	asmbl_21672	none	Trinity_GG_29538_c0_g1_i2,blat.proc3829897.chain_3207	2	STRG.22526.1,STRG.22526.3,STRG.22526.4,Trinity_GG_29538_c0_g1_i6,blat.proc3829897.chain_3208,blat.proc3829897.chain_3209,blat.proc3829897.chain_3211	7
scaffold_15	skipped_exon	4982605	4984030	-	asmbl_15186,asmbl_15189	none	STRG.18197.1,STRG.18197.3,blat.proc3829895.chain_2985,blat.proc3829895.chain_2986	4	STRG.18197.4	1
scaffold_17	alternate_exon	11036073	11036188	-	asmbl_19314	none	STRG.20653.4	1	STRG.20653.2,STRG.20653.3,blat.proc3829897.chain_1607	3
scaffold_2	starts_in_intron	15699265	15699265	+	asmbl_25097	none	blat.proc3829871.chain_2673	1	STRG.2526.1,STRG.2526.2,blat.proc3829871.chain_2674,blat.proc3829871.chain_2676	4
scaffold_12	starts_in_intron	5339507	5339507	+	asmbl_8610	none	Trinity_GG_8102_c0_g1_i1,blat.proc3829877.chain_3163	2	STRG.14679.1,Trinity_GG_8102_c0_g1_i2,blat.proc3829877.chain_3164	3
scaffold_12	ends_in_intron	8915656	8915656	+	asmbl_8803	none	blat.proc3829877.chain_3413	1	STRG.14884.1,STRG.14884.2,blat.proc3829877.chain_3414	3
scaffold_3	retained_exon	18154875	18154934	-	asmbl_39542	none	STRG.4023.2,blat.proc3829889.chain_96	2	STRG.4023.1,blat.proc3829889.chain_97	2
scaffold_16	retained_intron	125457	125550	+	asmbl_16786,asmbl_16787	none	STRG.18995.2,Trinity_GG_10419_c0_g1_i2,Trinity_GG_10419_c0_g1_i3,blat.proc3829879.chain_3619,blat.proc3829879.chain_3620	5	STRG.18995.1,Trinity_GG_10419_c0_g1_i4,blat.proc3829879.chain_3618	3
scaffold_17	starts_in_intron	10049359	10049359	+	asmbl_18288	none	Trinity_GG_11293_c0_g1_i5,blat.proc3829881.chain_1430	2	STRG.20609.1,STRG.20609.2,blat.proc3829881.chain_1431,blat.proc3829881.chain_1432	4
scaffold_27	ends_in_intron	128854	128854	-	asmbl_36592	none	blat.proc3829901.chain_1644	1	STRG.28527.2,STRG.28527.3,blat.proc3829901.chain_1642,blat.proc3829901.chain_1645	4
scaffold_1	alternate_exon	14076352	14080891	+	asmbl_2315	none	blat.proc3829871.chain_1101	1	STRG.999.1,Trinity_GG_614_c0_g1_i3,Trinity_GG_614_c0_g1_i4,blat.proc3829871.chain_1100,blat.proc3829871.chain_1102	5
scaffold_1	retained_intron	7801216	7801376	-	asmbl_449	none	blat.proc3829887.chain_418	1	STRG.539.1,blat.proc3829887.chain_416	2
scaffold_3	ends_in_intron	6833167	6833167	+	asmbl_40099	none	STRG.3303.2	1	STRG.3303.1,blat.proc3829871.chain_3486	2
scaffold_14	alt_donor	208102	208103	-	asmbl_12778,asmbl_12779,asmbl_12785	none	STRG.16702.1,STRG.16702.3,blat.proc3829895.chain_1409	3	STRG.16702.4,blat.proc3829895.chain_1408	2
scaffold_1	starts_in_intron	44426	44426	-	asmbl_5	none	Trinity_GG_17053_c3_g1_i1,blat.proc3829885.chain_3737	2	STRG.19.1,blat.proc3829885.chain_3732	2
scaffold_21	retained_intron	5170315	5170410	-	asmbl_27647,asmbl_27652	none	Trinity_GG_30430_c0_g1_i8,blat.proc3829899.chain_1130,blat.proc3829899.chain_1131	3	STRG.24038.1,blat.proc3829899.chain_1128,blat.proc3829899.chain_1129,blat.proc3829899.chain_1132,blat.proc3829899.chain_1134	5
scaffold_9	alt_acceptor	2801077	2801078	+	asmbl_53844	none	STRG.10912.2,Trinity_GG_6054_c0_g1_i7,blat.proc3829875.chain_3369	3	STRG.10912.1,Trinity_GG_6054_c0_g1_i2,blat.proc3829875.chain_3365,blat.proc3829875.chain_3372	4
scaffold_27	spliced_intron	1638883	1639004	-	asmbl_36725	none	STRG.28635.1,blat.proc3829901.chain_1833	2	blat.proc3829901.chain_1832	1
scaffold_20	starts_in_intron	11672642	11672642	-	asmbl_27103	none	blat.proc3829899.chain_651	1	STRG.23656.2,STRG.23656.3,STRG.23656.4,blat.proc3829899.chain_650,blat.proc3829899.chain_653,blat.proc3829899.chain_654	6
scaffold_1	starts_in_intron	8790095	8790095	+	asmbl_1935	none	Trinity_GG_371_c0_g1_i3,blat.proc3829871.chain_649	2	STRG.576.1,blat.proc3829871.chain_648,blat.proc3829871.chain_650	3
scaffold_27	alt_donor	4938756	4938757	+	asmbl_36285	none	STRG.28914.6	1	STRG.28914.1,STRG.28914.2,blat.proc3829885.chain_2065	3
scaffold_9	alt_acceptor	13297144	13297145	-	asmbl_55382,asmbl_55387	none	STRG.11625.3,STRG.11625.4	2	STRG.11625.1,STRG.11625.2,STRG.11625.5,STRG.11625.6,STRG.11625.7	5
scaffold_6	alt_acceptor	10160582	10160583	-	asmbl_48600	none	STRG.7846.1,blat.proc3829891.chain_111	2	STRG.7846.2	1
scaffold_28	alt_acceptor	303695	303696	+	asmbl_37966,asmbl_37967	none	STRG.29244.1,blat.proc3829885.chain_2416,blat.proc3829885.chain_2419	3	STRG.29244.2	1
scaffold_11	skipped_exon	4674969	4676447	-	asmbl_6585,asmbl_6587,asmbl_6588	none	STRG.13547.2,STRG.13547.3,STRG.13547.5,blat.proc3829893.chain_1970	4	STRG.13547.1,blat.proc3829893.chain_1971,blat.proc3829893.chain_1973	3
scaffold_7	spliced_intron	17808816	17808944	+	asmbl_51381,asmbl_51382,asmbl_51386,asmbl_51388	none	STRG.9616.1,blat.proc3829875.chain_2097,blat.proc3829875.chain_2098,blat.proc3829875.chain_2103,blat.proc3829875.chain_2104,blat.proc3829875.chain_2105	6	blat.proc3829875.chain_2099,blat.proc3829875.chain_2100,blat.proc3829875.chain_2102	3
scaffold_16	alternate_exon	14479978	14485511	+	asmbl_17483	none	STRG.19814.1,blat.proc3829881.chain_700	2	blat.proc3829881.chain_702	1
scaffold_5	spliced_intron	5754426	5756080	+	asmbl_44033	none	STRG.5987.2,blat.proc3829873.chain_2148	2	STRG.5987.1,Trinity_GG_3278_c0_g1_i2	2
scaffold_12	retained_intron	3400110	3400288	+	asmbl_8519	none	blat.proc3829877.chain_3025	1	blat.proc3829877.chain_3026	1
scaffold_8	spliced_intron	764211	764246	+	asmbl_51660	none	STRG.9728.2	1	STRG.9728.1,Trinity_GG_5358_c2_g1_i1,blat.proc3829875.chain_2139	3
scaffold_13	starts_in_intron	2875934	2875934	-	asmbl_9447	none	blat.proc3829895.chain_345	1	STRG.15576.1,blat.proc3829895.chain_347	2
scaffold_13	alternate_exon	710767	710857	+	asmbl_10471	none	STRG.15440.1,blat.proc3829879.chain_104	2	STRG.15440.2,blat.proc3829879.chain_105	2
scaffold_19	retained_intron	5648006	5648276	-	asmbl_21395	none	STRG.22118.2	1	STRG.22118.1,blat.proc3829897.chain_2823	2
scaffold_22	alt_acceptor	9884824	9884825	+	asmbl_29611	none	STRG.25308.2	1	STRG.25308.1,Trinity_GG_13993_c0_g1_i1,blat.proc3829883.chain_2293	3
scaffold_10	spliced_intron	17325750	17326440	-	asmbl_3952	none	STRG.13169.1,blat.proc3829893.chain_1573	2	STRG.13169.3,blat.proc3829893.chain_1572	2
scaffold_25	retained_exon	8270512	8270617	-	asmbl_34399	none	STRG.27644.1,Trinity_GG_32494_c0_g1_i1,blat.proc3829901.chain_934	3	Trinity_GG_32494_c0_g1_i2,blat.proc3829901.chain_933	2
scaffold_7	starts_in_intron	13210717	13210717	+	asmbl_51205	none	blat.proc3829875.chain_1880	1	STRG.9420.2,STRG.9420.3,STRG.9420.4,blat.proc3829875.chain_1881,blat.proc3829875.chain_1882,blat.proc3829875.chain_1883	6
scaffold_8	spliced_intron	6161273	6161428	-	asmbl_52853,asmbl_52854,asmbl_52857,asmbl_52858,asmbl_52859	none	STRG.10012.1,STRG.10012.3,Trinity_GG_22628_c0_g1_i1,blat.proc3829891.chain_2213,blat.proc3829891.chain_2214,blat.proc3829891.chain_2215,blat.proc3829891.chain_2218	7	blat.proc3829891.chain_2217	1
scaffold_20	ends_in_intron	10468973	10468973	-	asmbl_27029	none	blat.proc3829899.chain_581	1	STRG.23572.1,blat.proc3829899.chain_579,blat.proc3829899.chain_582	3
scaffold_15	retained_intron	15523267	15523823	-	asmbl_15805	none	STRG.18934.1,Trinity_GG_27646_c0_g1_i2,blat.proc3829895.chain_3705	3	Trinity_GG_27646_c0_g1_i1,blat.proc3829895.chain_3706	2
scaffold_11	spliced_intron	3186863	3186973	+	asmbl_5369	none	blat.proc3829877.chain_1912	1	blat.proc3829877.chain_1913	1
scaffold_7	spliced_intron	18002316	18002395	+	asmbl_51399	none	blat.proc3829875.chain_2108	1	blat.proc3829875.chain_2106,blat.proc3829875.chain_2107	2
scaffold_25	alt_donor	4442011	4442012	+	asmbl_33494,asmbl_33498	none	STRG.27356.4,Trinity_GG_15095_c0_g1_i2,blat.proc3829885.chain_403	3	STRG.27356.3,Trinity_GG_15095_c0_g1_i1,blat.proc3829885.chain_405	3
scaffold_9	alt_donor	12143015	12143016	-	asmbl_55319	none	STRG.11519.1,blat.proc3829891.chain_3567	2	STRG.11519.2	1
scaffold_1	starts_in_intron	16238833	16238833	+	asmbl_2452	none	Trinity_GG_667_c0_g1_i2,blat.proc3829871.chain_1201	2	STRG.1131.1,blat.proc3829871.chain_1200	2
scaffold_4	ends_in_intron	8081170	8081170	+	asmbl_42869	none	blat.proc3829873.chain_1015	1	STRG.4622.1,STRG.4622.2,blat.proc3829873.chain_1017	3
scaffold_6	spliced_intron	7185172	7185279	-	asmbl_48417,asmbl_48418	none	STRG.7616.1,blat.proc3829889.chain_3622,blat.proc3829889.chain_3623	3	STRG.7616.2,blat.proc3829889.chain_3621	2
scaffold_4	alt_acceptor	4112681	4112682	-	asmbl_41222	none	STRG.4314.1,blat.proc3829889.chain_376	2	blat.proc3829889.chain_373	1
scaffold_1	alt_acceptor	2744666	2744667	-	asmbl_128	none	STRG.173.1,blat.proc3829887.chain_55	2	STRG.173.4,blat.proc3829887.chain_56	2
scaffold_24	starts_in_intron	10487602	10487602	+	asmbl_32575	none	Trinity_GG_14920_c0_g1_i3,blat.proc3829885.chain_131	2	STRG.27000.1,STRG.27000.2,STRG.27000.4,STRG.27000.5,Trinity_GG_14920_c0_g1_i2,Trinity_GG_14920_c0_g1_i4,Trinity_GG_14920_c0_g1_i5,Trinity_GG_14920_c0_g1_i6,blat.proc3829885.chain_126,blat.proc3829885.chain_127,blat.proc3829885.chain_128,blat.proc3829885.chain_129	12
scaffold_7	alt_acceptor	129533	129534	-	asmbl_49479	none	STRG.8585.1	1	STRG.8585.8,blat.proc3829891.chain_992,blat.proc3829891.chain_998	3
scaffold_21	retained_intron	5536873	5536964	-	asmbl_27698,asmbl_27701	none	Trinity_GG_30443_c0_g1_i6,blat.proc3829899.chain_1166,blat.proc3829899.chain_1167	3	STRG.24073.1,STRG.24073.2,STRG.24073.3,blat.proc3829899.chain_1163,blat.proc3829899.chain_1165,blat.proc3829899.chain_1168	6
scaffold_2	ends_in_intron	4580019	4580019	+	asmbl_24385	none	blat.proc3829871.chain_1915	1	STRG.1884.1,STRG.1884.2,STRG.1884.3,blat.proc3829871.chain_1916,blat.proc3829871.chain_1917	5
scaffold_11	spliced_intron	4870477	4870559	-	asmbl_6619	none	STRG.13575.1,blat.proc3829893.chain_2007	2	blat.proc3829893.chain_2008	1
scaffold_11	ends_in_intron	7652809	7652809	+	asmbl_5641	none	Trinity_GG_7569_c0_g1_i2,blat.proc3829877.chain_2226	2	STRG.13755.1,Trinity_GG_7569_c0_g1_i1,blat.proc3829877.chain_2227	3
scaffold_22	spliced_intron	497867	498066	+	asmbl_29155	none	STRG.24682.3	1	STRG.24682.2,blat.proc3829883.chain_1657	2
scaffold_17	starts_in_intron	14349855	14349855	-	asmbl_19475,asmbl_19476	none	blat.proc3829897.chain_1802,blat.proc3829897.chain_1804	2	STRG.20903.1,STRG.20903.2,blat.proc3829897.chain_1803,blat.proc3829897.chain_1805	4
scaffold_14	spliced_intron	2940933	2941376	-	asmbl_12974,asmbl_12975	none	STRG.16884.1,STRG.16884.3,blat.proc3829895.chain_1610,blat.proc3829895.chain_1611	4	STRG.16884.2,Trinity_GG_26482_c0_g1_i4,blat.proc3829895.chain_1609	3
scaffold_5	spliced_intron	10534403	10534511	-	asmbl_45745	none	STRG.6332.4	1	STRG.6332.1,blat.proc3829889.chain_2347	2
scaffold_28	skipped_exon	6547550	6548299	-	asmbl_37681	none	STRG.29730.1	1	STRG.29730.2,STRG.29730.3	2
scaffold_11	alternate_exon	11315519	11315565	+	asmbl_5930	none	STRG.14067.1,blat.proc3829877.chain_2556	2	STRG.14067.2,blat.proc3829877.chain_2555	2
scaffold_20	ends_in_intron	9440578	9440578	-	asmbl_26957,asmbl_26959	none	STRG.23470.2,Trinity_GG_30068_c0_g1_i4,blat.proc3829899.chain_445,blat.proc3829899.chain_447	4	STRG.23470.1,Trinity_GG_30068_c0_g1_i1,blat.proc3829899.chain_446	3
scaffold_10	retained_intron	13563746	13563878	-	asmbl_3812	none	STRG.12946.1,Trinity_GG_24275_c0_g1_i1,blat.proc3829893.chain_1478	3	STRG.12946.2,blat.proc3829893.chain_1479	2
scaffold_4	alternate_exon	19679197	19679289	+	asmbl_43500,asmbl_43501	none	STRG.5556.2,STRG.5556.3,Trinity_GG_3040_c0_g1_i2,Trinity_GG_3040_c0_g1_i3,blat.proc3829873.chain_1749,blat.proc3829873.chain_1750	6	STRG.5556.1	1
scaffold_9	spliced_intron	12073542	12074636	-	asmbl_55315	none	STRG.11518.2,Trinity_GG_23360_c0_g1_i5,blat.proc3829891.chain_3634	3	Trinity_GG_23360_c0_g1_i7,blat.proc3829891.chain_3639	2
scaffold_7	skipped_exon	5423446	5425938	-	asmbl_49701	none	STRG.8866.1	1	STRG.8866.2	1
scaffold_19	starts_in_intron	12467704	12467704	-	asmbl_21701,asmbl_21707	none	Trinity_GG_29573_c2_g1_i9,blat.proc3829897.chain_3304,blat.proc3829897.chain_3306	3	STRG.22565.1,STRG.22565.2,blat.proc3829897.chain_3303,blat.proc3829897.chain_3305	4
scaffold_12	skipped_exon	7617899	7618496	-	asmbl_7730,asmbl_7731,asmbl_7733,asmbl_7736	none	STRG.14826.1,STRG.14826.4,STRG.14826.5,blat.proc3829893.chain_3214,blat.proc3829893.chain_3215	5	STRG.14826.2,STRG.14826.3,STRG.14826.6	3
scaffold_23	spliced_intron	2164190	2164645	-	asmbl_31419	none	STRG.25669.1	1	STRG.25669.2	1
scaffold_25	alt_acceptor	3185693	3185694	-	asmbl_34101,asmbl_34102	none	STRG.27241.2,blat.proc3829901.chain_567	2	STRG.27241.1,STRG.27241.3,blat.proc3829901.chain_565,blat.proc3829901.chain_566	4
scaffold_2	skipped_exon	2297619	2300475	-	asmbl_22910	none	STRG.1667.3,blat.proc3829887.chain_1487	2	blat.proc3829887.chain_1489	1
scaffold_11	retained_intron	12377973	12378067	-	asmbl_7064	none	blat.proc3829893.chain_2457	1	STRG.14140.1,blat.proc3829893.chain_2458	2
scaffold_5	retained_intron	15767254	15767399	+	asmbl_44681,asmbl_44682	none	blat.proc3829873.chain_2875,blat.proc3829873.chain_2880	2	STRG.6763.1,blat.proc3829873.chain_2876,blat.proc3829873.chain_2877,blat.proc3829873.chain_2882	4
scaffold_22	alternate_exon	11701969	11702130	+	asmbl_29705	none	STRG.25501.1,Trinity_GG_14081_c0_g1_i1,blat.proc3829883.chain_2430	3	STRG.25501.2	1
scaffold_20	starts_in_intron	10469394	10469394	-	asmbl_27026,asmbl_27028	none	STRG.23572.2,blat.proc3829899.chain_582	2	STRG.23572.1,blat.proc3829899.chain_579,blat.proc3829899.chain_581	3
scaffold_9	retained_intron	12436520	12436852	+	asmbl_54412	none	STRG.11546.1,Trinity_GG_6448_c0_g1_i1,blat.proc3829877.chain_326	3	blat.proc3829877.chain_325	1
scaffold_8	skipped_exon	6809136	6809444	-	asmbl_52880	none	STRG.10035.2,blat.proc3829891.chain_2193	2	STRG.10035.1,STRG.10035.3,blat.proc3829891.chain_2192	3
scaffold_26	alt_donor	10119684	10119685	-	asmbl_35091	none	Trinity_GG_32936_c0_g1_i5,blat.proc3829901.chain_1633	2	STRG.28511.1,STRG.28511.2,STRG.28511.3,Trinity_GG_32936_c0_g1_i11,Trinity_GG_32936_c0_g1_i13,Trinity_GG_32936_c0_g1_i3,Trinity_GG_32936_c0_g1_i8,blat.proc3829901.chain_1632,blat.proc3829901.chain_1634,blat.proc3829901.chain_1635,blat.proc3829901.chain_1636	11
scaffold_7	skipped_exon	18783525	18784249	+	asmbl_51422	none	STRG.9691.5	1	STRG.9691.1,STRG.9691.2,STRG.9691.3,STRG.9691.4,blat.proc3829875.chain_2056	5
scaffold_9	alt_acceptor	11842903	11842904	-	asmbl_55294	none	blat.proc3829891.chain_3624,blat.proc3829891.chain_3625	2	STRG.11491.1	1
scaffold_1	alt_acceptor	15988382	15988383	+	asmbl_2440	none	STRG.1118.2	1	STRG.1118.1,blat.proc3829871.chain_1185	2
scaffold_16	retained_intron	4161098	4161202	+	asmbl_16975	none	Trinity_GG_10526_c1_g1_i1,blat.proc3829881.chain_60	2	Trinity_GG_10526_c1_g1_i4,blat.proc3829881.chain_59	2
scaffold_4	retained_intron	16577833	16578010	+	asmbl_43313,asmbl_43317	none	Trinity_GG_2896_c0_g1_i1,blat.proc3829873.chain_1498,blat.proc3829873.chain_1501	3	STRG.5238.1,STRG.5238.2,STRG.5238.3,blat.proc3829873.chain_1499,blat.proc3829873.chain_1500	5
scaffold_1	starts_in_intron	863451	863451	+	asmbl_1430	none	Trinity_GG_35_c0_g1_i3,blat.proc3829871.chain_60	2	STRG.37.1,STRG.37.2,Trinity_GG_35_c0_g1_i2,Trinity_GG_35_c0_g1_i4,blat.proc3829871.chain_59,blat.proc3829871.chain_61	6
scaffold_5	ends_in_intron	9075427	9075427	+	asmbl_44258	none	blat.proc3829873.chain_2397	1	STRG.6235.1,STRG.6235.2,STRG.6235.3,blat.proc3829873.chain_2398,blat.proc3829873.chain_2399,blat.proc3829873.chain_2400	6
scaffold_15	ends_in_intron	15355389	15355389	+	asmbl_14709	none	blat.proc3829879.chain_3501	1	blat.proc3829879.chain_3500	1
scaffold_15	starts_in_intron	9867441	9867441	+	asmbl_14368	none	blat.proc3829879.chain_3061	1	STRG.18515.1,STRG.18515.2,Trinity_GG_10120_c0_g2_i4,blat.proc3829879.chain_3062,blat.proc3829879.chain_3064	5
scaffold_24	alternate_exon	10134153	10138153	+	asmbl_32545	none	STRG.26962.1,Trinity_GG_14876_c0_g1_i2,blat.proc3829885.chain_41	3	STRG.26962.3	1
scaffold_2	alt_acceptor	926761	926762	+	asmbl_24171,asmbl_24173,asmbl_24174,asmbl_24175	none	STRG.1569.1,blat.proc3829871.chain_1534,blat.proc3829871.chain_1535,blat.proc3829871.chain_1537,blat.proc3829871.chain_1542	5	STRG.1569.3	1
scaffold_14	alternate_exon	14148818	14150151	+	asmbl_12512	none	STRG.17676.1	1	STRG.17676.4	1
scaffold_9	retained_intron	2468905	2469096	-	asmbl_54841	none	blat.proc3829891.chain_3004	1	STRG.10883.1,blat.proc3829891.chain_3003	2
scaffold_26	alt_acceptor	4802648	4802649	-	asmbl_34869	none	STRG.28178.1	1	STRG.28178.2,Trinity_GG_32780_c0_g1_i3,blat.proc3829901.chain_1372	3
scaffold_26	retained_intron	8995725	8995801	+	asmbl_35718	none	STRG.28445.1	1	STRG.28445.2,blat.proc3829885.chain_1477	2
scaffold_25	spliced_intron	5635227	5635475	+	asmbl_33569	none	STRG.27444.1,Trinity_GG_15129_c0_g1_i2,blat.proc3829885.chain_486	3	Trinity_GG_15129_c0_g1_i1,blat.proc3829885.chain_485	2
scaffold_16	ends_in_intron	5388271	5388271	-	asmbl_16269	none	blat.proc3829897.chain_328	1	STRG.19274.1,STRG.19274.3,blat.proc3829897.chain_329,blat.proc3829897.chain_330	4
scaffold_24	skipped_exon	5290101	5290660	-	asmbl_32874	none	STRG.26597.2	1	STRG.26597.1,blat.proc3829899.chain_3660	2
scaffold_2	alt_donor	16424824	16424825	+	asmbl_25175	none	STRG.2578.1,blat.proc3829871.chain_2789	2	STRG.2578.2,blat.proc3829871.chain_2788	2
scaffold_16	alt_acceptor	8591307	8591308	+	asmbl_17212,asmbl_17213,asmbl_17219	none	STRG.19477.7,STRG.19477.8,STRG.19477.9,blat.proc3829881.chain_353	4	STRG.19477.1,STRG.19477.3,blat.proc3829881.chain_354,blat.proc3829881.chain_356,blat.proc3829881.chain_359	5
scaffold_6	skipped_exon	17885654	17886862	+	asmbl_47735	none	STRG.8475.1,Trinity_GG_4642_c0_g1_i5,blat.proc3829875.chain_828	3	STRG.8475.2,STRG.8475.3,Trinity_GG_4642_c0_g1_i1,Trinity_GG_4642_c0_g1_i2,Trinity_GG_4642_c0_g1_i3,Trinity_GG_4642_c0_g1_i4,blat.proc3829875.chain_827,blat.proc3829875.chain_829,blat.proc3829875.chain_830,blat.proc3829875.chain_832	10
scaffold_27	spliced_intron	128244	128281	-	asmbl_36587,asmbl_36591	none	STRG.28527.2,blat.proc3829901.chain_1642,blat.proc3829901.chain_1645	3	STRG.28527.3	1
scaffold_18	ends_in_intron	7508909	7508909	-	asmbl_19983,asmbl_19984	none	Trinity_GG_28966_c0_g1_i1,Trinity_GG_28966_c0_g1_i2,blat.proc3829897.chain_2208,blat.proc3829897.chain_2210	4	STRG.21437.1,Trinity_GG_28966_c0_g1_i3,blat.proc3829897.chain_2209	3
scaffold_8	starts_in_intron	10240588	10240588	+	asmbl_52154	none	STRG.10282.4,blat.proc3829875.chain_2793	2	STRG.10282.1,STRG.10282.2,blat.proc3829875.chain_2790,blat.proc3829875.chain_2791,blat.proc3829875.chain_2792	5
scaffold_17	alt_donor	14633366	14633367	+	asmbl_18534	none	STRG.20934.1	1	STRG.20934.3,blat.proc3829881.chain_1774	2
scaffold_20	starts_in_intron	9498341	9498341	+	asmbl_26007	none	Trinity_GG_12946_c2_g1_i1,blat.proc3829883.chain_533	2	STRG.23474.1,STRG.23474.2,blat.proc3829883.chain_527,blat.proc3829883.chain_529	4
scaffold_22	spliced_intron	4240365	4240805	-	asmbl_29977,asmbl_29978,asmbl_29985	none	STRG.24838.1,STRG.24838.4,blat.proc3829899.chain_1981,blat.proc3829899.chain_1983	4	blat.proc3829899.chain_1980	1
scaffold_15	alt_donor	3401568	3401569	-	asmbl_15105,asmbl_15108	none	STRG.18107.1,STRG.18107.4,blat.proc3829895.chain_2867	3	STRG.18107.3	1
scaffold_8	alt_acceptor	4824505	4824506	+	asmbl_51840	none	STRG.9937.2	1	STRG.9937.1,blat.proc3829875.chain_2361	2
scaffold_1	retained_intron	12683507	12683640	+	asmbl_2232	none	blat.proc3829871.chain_958	1	STRG.890.2	1
scaffold_10	starts_in_intron	11501613	11501613	+	asmbl_4741	none	STRG.12794.1,blat.proc3829877.chain_1301	2	blat.proc3829877.chain_1299	1
scaffold_25	spliced_intron	4594574	4594648	+	asmbl_33522	none	STRG.27379.1,Trinity_GG_15102_c0_g1_i1,blat.proc3829885.chain_418	3	STRG.27379.2,Trinity_GG_15102_c0_g1_i2,blat.proc3829885.chain_419	3
scaffold_5	retained_intron	11991739	11993287	-	asmbl_45813	none	blat.proc3829889.chain_2520	1	STRG.6447.1,blat.proc3829889.chain_2521	2
scaffold_14	alt_acceptor	15517155	15517156	-	asmbl_13709	none	STRG.17775.3	1	STRG.17775.2	1
scaffold_7	alternate_exon	12367364	12369011	+	asmbl_51126	none	STRG.9325.1,blat.proc3829875.chain_1799	2	blat.proc3829875.chain_1804	1
scaffold_17	spliced_intron	8318412	8318617	+	asmbl_18094	none	STRG.20443.2	1	blat.proc3829881.chain_1249	1
scaffold_17	ends_in_intron	2567457	2567457	+	asmbl_17793	none	blat.proc3829881.chain_841	1	STRG.20039.1,STRG.20039.2,blat.proc3829881.chain_839,blat.proc3829881.chain_840	4
scaffold_1	starts_in_intron	3255793	3255793	+	asmbl_1579	none	Trinity_GG_125_c0_g1_i6,blat.proc3829871.chain_210	2	STRG.201.1,STRG.201.2,STRG.201.3,Trinity_GG_125_c0_g1_i1,Trinity_GG_125_c0_g1_i2,Trinity_GG_125_c0_g1_i4,Trinity_GG_125_c0_g1_i5,blat.proc3829871.chain_209,blat.proc3829871.chain_211,blat.proc3829871.chain_212,blat.proc3829871.chain_213	11
scaffold_17	starts_in_intron	14395132	14395132	+	asmbl_18523	none	blat.proc3829881.chain_1743	1	STRG.20909.1,STRG.20909.2,STRG.20909.3,blat.proc3829881.chain_1741,blat.proc3829881.chain_1742,blat.proc3829881.chain_1744	6
scaffold_2	alt_donor	2995488	2995489	-	asmbl_22975	none	STRG.1746.3	1	STRG.1746.1,STRG.1746.2	2
scaffold_25	retained_intron	6067602	6068378	-	asmbl_34291,asmbl_34292,asmbl_34293	none	blat.proc3829901.chain_716,blat.proc3829901.chain_718,blat.proc3829901.chain_719	3	STRG.27475.1,blat.proc3829901.chain_717,blat.proc3829901.chain_722	3
scaffold_23	starts_in_intron	5201267	5201267	-	asmbl_31618	none	Trinity_GG_31492_c0_g1_i2,blat.proc3829899.chain_3001	2	STRG.25881.1,Trinity_GG_31492_c0_g1_i3,blat.proc3829899.chain_2999	3
scaffold_17	spliced_intron	12090439	12090468	+	asmbl_18381	none	STRG.20727.2	1	STRG.20727.3	1
scaffold_11	alt_donor	4745191	4745192	-	asmbl_6598,asmbl_6601,asmbl_6602,asmbl_6603	none	STRG.13555.2,blat.proc3829893.chain_2035,blat.proc3829893.chain_2038,blat.proc3829893.chain_2039,blat.proc3829893.chain_2040	5	STRG.13555.1,blat.proc3829893.chain_2036	2
scaffold_24	alt_acceptor	7173012	7173013	-	asmbl_33004	none	STRG.26749.1	1	STRG.26749.2,blat.proc3829901.chain_4,blat.proc3829901.chain_5	3
scaffold_17	retained_intron	4005466	4005564	+	asmbl_17890	none	blat.proc3829881.chain_1000	1	STRG.20150.1,blat.proc3829881.chain_1002	2
scaffold_11	alt_acceptor	12904974	12904975	-	asmbl_7081,asmbl_7082	none	STRG.14165.1,STRG.14165.2	2	blat.proc3829893.chain_2638	1
scaffold_28	retained_intron	5237564	5237680	-	asmbl_37592,asmbl_37595	none	blat.proc3829901.chain_2678,blat.proc3829901.chain_2684	2	STRG.29652.1,STRG.29652.2,blat.proc3829901.chain_2680,blat.proc3829901.chain_2683,blat.proc3829901.chain_2685,blat.proc3829901.chain_2687	6
scaffold_9	ends_in_intron	5756481	5756481	-	asmbl_54994	none	Trinity_GG_23161_c0_g1_i7,blat.proc3829891.chain_3236	2	STRG.11135.2	1
scaffold_16	skipped_exon	7097030	7097963	+	asmbl_17121	none	STRG.19367.2,blat.proc3829881.chain_265	2	STRG.19367.1,blat.proc3829881.chain_264	2
scaffold_3	spliced_intron	10756104	10756206	+	asmbl_40246,asmbl_40248	none	STRG.3507.1,blat.proc3829871.chain_3669,blat.proc3829871.chain_3670	3	STRG.3507.2,blat.proc3829871.chain_3671	2
scaffold_4	spliced_intron	18282392	18282451	+	asmbl_43428	none	STRG.5427.1	1	Trinity_GG_2987_c0_g1_i1,blat.proc3829873.chain_1655,blat.proc3829873.chain_1656	3
scaffold_15	alternate_exon	8044853	8044873	-	asmbl_15346	none	STRG.18369.2	1	STRG.18369.1,STRG.18369.3,STRG.18369.4,blat.proc3829895.chain_3067	4
scaffold_13	spliced_intron	3704686	3704754	-	asmbl_9526	none	STRG.15671.4	1	STRG.15671.1,STRG.15671.3,STRG.15671.5,STRG.15671.6,blat.proc3829895.chain_438,blat.proc3829895.chain_439	6
scaffold_18	alt_donor	13635005	13635006	-	asmbl_20204	none	STRG.21784.1,blat.proc3829897.chain_2525	2	blat.proc3829897.chain_2524	1
scaffold_15	alternate_exon	2563725	2565933	+	asmbl_14004	none	STRG.18036.1,Trinity_GG_9908_c0_g1_i6	2	STRG.18036.2	1
scaffold_5	starts_in_intron	10892725	10892725	-	asmbl_45769,asmbl_45770	none	blat.proc3829889.chain_2356,blat.proc3829889.chain_2357	2	STRG.6359.1,STRG.6359.2,blat.proc3829889.chain_2353,blat.proc3829889.chain_2355,blat.proc3829889.chain_2358	5
scaffold_17	retained_intron	9854049	9854615	-	asmbl_19255	none	STRG.20595.1,Trinity_GG_28586_c0_g1_i1,blat.proc3829897.chain_1526	3	STRG.20595.2,blat.proc3829897.chain_1525	2
scaffold_5	alt_acceptor	13245876	13245877	+	asmbl_44541,asmbl_44542,asmbl_44544	none	STRG.6561.1,STRG.6561.2,blat.proc3829873.chain_2703,blat.proc3829873.chain_2704,blat.proc3829873.chain_2706	5	STRG.6561.3	1
scaffold_20	alt_donor	11573166	11573167	-	asmbl_27083	none	STRG.23650.1,blat.proc3829899.chain_596	2	STRG.23650.2,STRG.23650.3,STRG.23650.4,blat.proc3829899.chain_597	4
scaffold_7	starts_in_intron	15287356	15287356	+	asmbl_51322	none	Trinity_GG_5299_c0_g1_i2,blat.proc3829875.chain_2003	2	STRG.9531.1,blat.proc3829875.chain_2002	2
scaffold_17	ends_in_intron	12199256	12199256	+	asmbl_18399,asmbl_18400	none	blat.proc3829881.chain_1578	1	STRG.20743.2,STRG.20743.3,STRG.20743.5,blat.proc3829881.chain_1576	4
scaffold_21	alt_donor	7287140	7287141	-	asmbl_27812,asmbl_27814	none	STRG.24234.1,STRG.24234.2,Trinity_GG_30523_c0_g1_i1,blat.proc3829899.chain_1301	4	STRG.24234.3,Trinity_GG_30523_c0_g1_i2,blat.proc3829899.chain_1302	3
scaffold_11	skipped_exon	11936507	11937127	-	asmbl_7021	none	STRG.14160.2	1	STRG.14160.4,STRG.14160.5	2
scaffold_10	spliced_intron	3065944	3066072	-	asmbl_3070,asmbl_3072,asmbl_3073	none	STRG.12119.2,STRG.12119.3,blat.proc3829893.chain_570,blat.proc3829893.chain_571	4	blat.proc3829893.chain_572,blat.proc3829893.chain_573	2
scaffold_17	ends_in_intron	5084212	5084212	-	asmbl_18953	none	STRG.20223.2,blat.proc3829897.chain_1185	2	STRG.20223.1	1
scaffold_6	alt_donor	16448387	16448388	-	asmbl_49071	none	STRG.8365.1,blat.proc3829891.chain_634	2	STRG.8365.2,blat.proc3829891.chain_633	2
scaffold_19	spliced_intron	11481673	11481887	-	asmbl_21613,asmbl_21614,asmbl_21615,asmbl_21619,asmbl_21623,asmbl_21624	none	STRG.22477.1,STRG.22477.2,STRG.22477.3,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184,blat.proc3829897.chain_3185,blat.proc3829897.chain_3187,blat.proc3829897.chain_3192	8	Trinity_GG_29530_c0_g1_i2,blat.proc3829897.chain_3183	2
scaffold_21	alternate_exon	1756164	1757862	-	asmbl_27448	none	blat.proc3829899.chain_886	1	STRG.23809.3	1
scaffold_1	spliced_intron	3270179	3270358	-	asmbl_142	none	STRG.199.4	1	STRG.199.2,blat.proc3829887.chain_98	2
scaffold_14	starts_in_intron	2464154	2464154	-	asmbl_12934	none	blat.proc3829895.chain_1548	1	STRG.16842.1,STRG.16842.2,STRG.16842.4,blat.proc3829895.chain_1549	4
scaffold_2	alt_donor	16861233	16861234	+	asmbl_25180	none	STRG.2599.1,blat.proc3829871.chain_2828	2	STRG.2599.2,blat.proc3829871.chain_2831	2
scaffold_12	alt_donor	12397424	12397425	-	asmbl_8013	none	STRG.15128.3	1	STRG.15128.1,STRG.15128.2,blat.proc3829893.chain_3552	3
scaffold_16	alternate_exon	5958646	5958927	+	asmbl_17041	none	STRG.19319.2	1	STRG.19319.1	1
scaffold_4	starts_in_intron	1334492	1334492	-	asmbl_41113	none	blat.proc3829889.chain_300	1	STRG.4173.2,STRG.4173.3,STRG.4173.4,STRG.4173.5,blat.proc3829889.chain_299,blat.proc3829889.chain_301,blat.proc3829889.chain_302	7
scaffold_11	alt_donor	9136353	9136354	-	asmbl_6900	none	blat.proc3829893.chain_2285	1	STRG.13942.3	1
scaffold_17	alternate_exon	6905178	6905222	-	asmbl_19047	none	STRG.20341.1	1	STRG.20341.2,blat.proc3829897.chain_1302	2
scaffold_17	spliced_intron	8303687	8303849	-	asmbl_19132,asmbl_19133	none	STRG.20439.1,blat.proc3829897.chain_1353,blat.proc3829897.chain_1354	3	STRG.20439.2	1
scaffold_23	alt_donor	6618879	6618880	+	asmbl_30925,asmbl_30927	none	STRG.25983.1,blat.proc3829883.chain_2871,blat.proc3829883.chain_2874	3	Trinity_GG_14339_c0_g1_i2,blat.proc3829883.chain_2872	2
scaffold_24	spliced_intron	1945924	1946155	-	asmbl_32743	none	STRG.26401.4	1	STRG.26401.3	1
scaffold_28	spliced_intron	5390808	5391042	+	asmbl_38279,asmbl_38284,asmbl_38285	none	STRG.29664.1,STRG.29664.2,Trinity_GG_16450_c0_g1_i2,blat.proc3829885.chain_2784,blat.proc3829885.chain_2786	5	STRG.29664.4,Trinity_GG_16450_c0_g1_i3,blat.proc3829885.chain_2785	3
scaffold_17	ends_in_intron	652698	652698	-	asmbl_18682	none	blat.proc3829897.chain_860	1	STRG.19899.1,Trinity_GG_28182_c0_g1_i1,Trinity_GG_28182_c0_g1_i2,Trinity_GG_28182_c0_g1_i3,blat.proc3829897.chain_859,blat.proc3829897.chain_861,blat.proc3829897.chain_862	7
scaffold_9	spliced_intron	9706825	9707760	+	asmbl_54214	none	Trinity_GG_6324_c1_g1_i1,blat.proc3829877.chain_111	2	STRG.11336.3,Trinity_GG_6324_c1_g1_i12,blat.proc3829877.chain_113	3
scaffold_1	retained_intron	16478498	16478746	-	asmbl_997	none	blat.proc3829887.chain_1054	1	STRG.1157.1,STRG.1157.2,blat.proc3829887.chain_1053,blat.proc3829887.chain_1057	4
scaffold_14	starts_in_intron	10382813	10382813	+	asmbl_12294	none	Trinity_GG_9541_c1_g1_i1,blat.proc3829879.chain_2061	2	STRG.17371.2	1
scaffold_21	alternate_exon	830866	833404	+	asmbl_28335	none	blat.proc3829883.chain_912	1	STRG.23762.3	1
scaffold_12	starts_in_intron	9758673	9758673	+	asmbl_8840	none	blat.proc3829877.chain_3460	1	STRG.14933.1,STRG.14933.2,blat.proc3829877.chain_3459	3
scaffold_15	retained_intron	11728507	11728700	-	asmbl_15546	none	STRG.18620.2	1	STRG.18620.1	1
scaffold_1	spliced_intron	18322459	18322534	+	asmbl_2533	none	STRG.1288.1	1	STRG.1288.2,blat.proc3829871.chain_1315,blat.proc3829871.chain_1316	3
scaffold_20	alt_acceptor	10385037	10385038	+	asmbl_26107,asmbl_26108,asmbl_26113,asmbl_26114	none	STRG.23569.1,STRG.23569.2,STRG.23569.3,Trinity_GG_12979_c0_g1_i5,Trinity_GG_12979_c0_g1_i6,blat.proc3829883.chain_591,blat.proc3829883.chain_592	7	STRG.23569.5,Trinity_GG_12979_c0_g1_i2,blat.proc3829883.chain_594	3
scaffold_4	alt_acceptor	5651885	5651886	-	asmbl_41361	none	blat.proc3829889.chain_609	1	STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_605,blat.proc3829889.chain_606,blat.proc3829889.chain_608,blat.proc3829889.chain_611,blat.proc3829889.chain_612,blat.proc3829889.chain_613	10
scaffold_18	retained_intron	824174	824807	+	asmbl_20351,asmbl_20353	none	STRG.20996.2,Trinity_GG_11513_c0_g1_i7,blat.proc3829881.chain_1778,blat.proc3829881.chain_1780	4	STRG.20996.1,blat.proc3829881.chain_1781	2
scaffold_13	ends_in_intron	7175660	7175660	-	asmbl_9814	none	Trinity_GG_26018_c0_g1_i1,blat.proc3829895.chain_778	2	STRG.15997.1,blat.proc3829895.chain_779	2
scaffold_12	skipped_exon	7650035	7651198	+	asmbl_8739	none	STRG.14833.1,Trinity_GG_8196_c0_g1_i2,blat.proc3829877.chain_3325	3	STRG.14833.3	1
scaffold_20	alt_acceptor	417127	417128	+	asmbl_25499	none	STRG.22721.1,blat.proc3829881.chain_3644	2	STRG.22721.2	1
scaffold_15	skipped_exon	6956898	6957426	-	asmbl_15288	none	STRG.18291.3,blat.proc3829895.chain_3054	2	STRG.18291.1,STRG.18291.2,blat.proc3829895.chain_3051,blat.proc3829895.chain_3052,blat.proc3829895.chain_3053	5
scaffold_2	alt_acceptor	167660	167661	+	asmbl_24097,asmbl_24098	none	STRG.1523.2,blat.proc3829871.chain_1599	2	STRG.1523.1,blat.proc3829871.chain_1595,blat.proc3829871.chain_1597	3
scaffold_17	ends_in_intron	3383685	3383685	-	asmbl_18853	none	Trinity_GG_28278_c0_g1_i2,blat.proc3829897.chain_1026	2	STRG.20105.1	1
scaffold_14	starts_in_intron	11093271	11093271	+	asmbl_12343	none	Trinity_GG_9600_c0_g1_i1,blat.proc3829879.chain_2154	2	STRG.17427.1,blat.proc3829879.chain_2153	2
scaffold_9	starts_in_intron	2645891	2645891	-	asmbl_54846	none	blat.proc3829891.chain_3069	1	STRG.10900.1,blat.proc3829891.chain_3070	2
scaffold_22	alt_acceptor	10002997	10002998	+	asmbl_29625	none	STRG.25328.2	1	STRG.25328.1	1
scaffold_21	alternate_exon	7928459	7928624	+	asmbl_28787	none	STRG.24313.4,blat.proc3829883.chain_1452	2	STRG.24313.3,blat.proc3829883.chain_1451	2
scaffold_14	skipped_exon	14536262	14536671	-	asmbl_13673	none	STRG.17699.3	1	STRG.17699.4	1
scaffold_19	alternate_exon	7707004	7708318	+	asmbl_22293	none	STRG.22243.2,blat.proc3829881.chain_3149	2	STRG.22243.1,blat.proc3829881.chain_3150,blat.proc3829881.chain_3151	3
scaffold_8	retained_intron	7986965	7987830	-	asmbl_52932	none	Trinity_GG_22656_c1_g1_i1,blat.proc3829891.chain_2261,blat.proc3829891.chain_2266	3	STRG.10092.1,STRG.10092.2,Trinity_GG_22656_c0_g1_i5,blat.proc3829891.chain_2262,blat.proc3829891.chain_2265	5
scaffold_20	alternate_exon	7067844	7071960	-	asmbl_26787	none	STRG.23262.1,blat.proc3829899.chain_258	2	STRG.23262.2,blat.proc3829899.chain_257	2
scaffold_19	ends_in_intron	3671681	3671681	-	asmbl_21327	none	Trinity_GG_29269_c0_g2_i1,blat.proc3829897.chain_2746	2	STRG.22034.1,STRG.22034.3,Trinity_GG_29269_c0_g1_i6,blat.proc3829897.chain_2741,blat.proc3829897.chain_2742,blat.proc3829897.chain_2745	6
scaffold_24	starts_in_intron	6910096	6910096	-	asmbl_32990	none	blat.proc3829899.chain_3732	1	STRG.26729.1	1
scaffold_7	alternate_exon	12543462	12543529	-	asmbl_50055,asmbl_50058,asmbl_50060	none	STRG.9352.1,STRG.9352.4,blat.proc3829891.chain_1570,blat.proc3829891.chain_1571	4	STRG.9352.5	1
scaffold_23	retained_intron	3656249	3656339	+	asmbl_30763	none	STRG.25778.2,Trinity_GG_14190_c0_g1_i3,blat.proc3829883.chain_2611	3	STRG.25778.1,Trinity_GG_14190_c0_g1_i1,blat.proc3829883.chain_2610,blat.proc3829883.chain_2612	4
scaffold_2	alt_donor	20127928	20127929	-	asmbl_23899	none	STRG.2837.1	1	blat.proc3829871.chain_2940	1
scaffold_1	alt_donor	6127194	6127195	-	asmbl_322,asmbl_323	none	STRG.412.1,STRG.412.2,blat.proc3829887.chain_295	3	blat.proc3829887.chain_298	1
scaffold_12	starts_in_intron	5706196	5706196	-	asmbl_7653	none	Trinity_GG_25220_c0_g1_i3,blat.proc3829893.chain_3112	2	blat.proc3829893.chain_3109	1
scaffold_18	spliced_intron	6294324	6294450	+	asmbl_20700	none	STRG.21353.2,blat.proc3829881.chain_2240	2	STRG.21353.1,Trinity_GG_11746_c0_g1_i1,blat.proc3829881.chain_2239	3
scaffold_17	retained_intron	3795219	3795317	+	asmbl_17865	none	STRG.20125.2	1	STRG.20125.1,blat.proc3829881.chain_951	2
scaffold_6	spliced_intron	10718997	10719099	+	asmbl_47227	none	STRG.7885.2,blat.proc3829875.chain_261	2	STRG.7885.1,STRG.7885.3,blat.proc3829875.chain_259,blat.proc3829875.chain_260	4
scaffold_11	retained_intron	174383	174536	+	asmbl_5224,asmbl_5227	none	STRG.13233.2,blat.proc3829877.chain_1766	2	STRG.13233.1,blat.proc3829877.chain_1767,blat.proc3829877.chain_1768,blat.proc3829877.chain_1769	4
scaffold_11	spliced_intron	9083178	9083266	-	asmbl_6895,asmbl_6896	none	blat.proc3829893.chain_2350,blat.proc3829893.chain_2351	2	STRG.13931.1,Trinity_GG_24787_c0_g1_i3,blat.proc3829893.chain_2349	3
scaffold_23	ends_in_intron	5310272	5310272	+	asmbl_30858,asmbl_30861	none	STRG.25889.1,blat.proc3829883.chain_2775,blat.proc3829883.chain_2776	3	STRG.25889.2,blat.proc3829883.chain_2773	2
scaffold_15	alternate_exon	11969233	11969329	-	asmbl_15561	none	STRG.18627.2	1	STRG.18627.1	1
scaffold_3	starts_in_intron	6218757	6218757	-	asmbl_38876	none	blat.proc3829887.chain_2937	1	STRG.3276.1,STRG.3276.2,blat.proc3829887.chain_2934,blat.proc3829887.chain_2935,blat.proc3829887.chain_2936	5
scaffold_7	retained_intron	1440371	1440604	-	asmbl_49541	none	blat.proc3829891.chain_1002	1	STRG.8631.1,blat.proc3829891.chain_1003	2
scaffold_15	starts_in_intron	9733265	9733265	-	asmbl_15428	none	Trinity_GG_27344_c0_g1_i5	1	STRG.18480.1,blat.proc3829895.chain_3131	2
scaffold_3	skipped_exon	16078007	16079016	-	asmbl_39423	none	STRG.3885.1,blat.proc3829887.chain_3684	2	STRG.3885.2,STRG.3885.3,blat.proc3829887.chain_3685	3
scaffold_4	retained_intron	14648429	14648648	-	asmbl_41810,asmbl_41814,asmbl_41815	none	STRG.5094.3,blat.proc3829889.chain_1117,blat.proc3829889.chain_1123	3	STRG.5094.1,STRG.5094.2,blat.proc3829889.chain_1118,blat.proc3829889.chain_1119,blat.proc3829889.chain_1121,blat.proc3829889.chain_1122	6
scaffold_14	alt_donor	6679304	6679305	+	asmbl_12078	none	blat.proc3829879.chain_1845,blat.proc3829879.chain_1846	2	STRG.17093.1,blat.proc3829879.chain_1844	2
scaffold_10	alt_donor	3794602	3794603	-	asmbl_3143,asmbl_3146	none	STRG.12214.1,blat.proc3829893.chain_665,blat.proc3829893.chain_667	3	STRG.12214.3	1
scaffold_6	spliced_intron	12484297	12484381	+	asmbl_47338	none	STRG.8000.1,Trinity_GG_4381_c0_g1_i2,blat.proc3829875.chain_392	3	STRG.8000.2,STRG.8000.3,Trinity_GG_4381_c0_g1_i1,Trinity_GG_4381_c0_g1_i3,blat.proc3829875.chain_393,blat.proc3829875.chain_394	6
scaffold_27	retained_intron	927062	927428	-	asmbl_36666	none	STRG.28568.1,Trinity_GG_32939_c0_g1_i2,blat.proc3829901.chain_1650	3	STRG.28568.2,Trinity_GG_32939_c0_g1_i3,Trinity_GG_32939_c0_g1_i4,blat.proc3829901.chain_1649,blat.proc3829901.chain_1651	5
scaffold_10	skipped_exon	12856613	12857353	-	asmbl_3737	none	STRG.12862.1	1	STRG.12862.2	1
scaffold_23	alt_acceptor	1120015	1120016	+	asmbl_30611	none	STRG.25570.2,blat.proc3829883.chain_2449	2	STRG.25570.1,blat.proc3829883.chain_2448	2
scaffold_6	alt_acceptor	18837576	18837577	+	asmbl_47797,asmbl_47802	none	STRG.8547.5,blat.proc3829875.chain_887	2	STRG.8547.1,STRG.8547.2,STRG.8547.3,STRG.8547.4,Trinity_GG_4669_c0_g1_i6,blat.proc3829875.chain_888,blat.proc3829875.chain_889,blat.proc3829875.chain_890	8
scaffold_10	alt_donor	11833308	11833309	+	asmbl_4773	none	STRG.12812.2	1	STRG.12812.1,blat.proc3829877.chain_1393	2
scaffold_12	retained_exon	7618188	7618268	-	asmbl_7732,asmbl_7734,asmbl_7735	none	STRG.14826.2,STRG.14826.3,STRG.14826.6	3	STRG.14826.1,STRG.14826.4,STRG.14826.5,blat.proc3829893.chain_3214,blat.proc3829893.chain_3215	5
scaffold_19	starts_in_intron	3492598	3492598	+	asmbl_22118	none	blat.proc3829881.chain_2962	1	STRG.22022.1,blat.proc3829881.chain_2963	2
scaffold_28	starts_in_intron	2465159	2465159	+	asmbl_38069	none	blat.proc3829885.chain_2488	1	STRG.29403.1,STRG.29403.2,blat.proc3829885.chain_2486,blat.proc3829885.chain_2487	4
scaffold_5	starts_in_intron	12888435	12888435	+	asmbl_44503	none	Trinity_GG_3544_c0_g1_i1,blat.proc3829873.chain_2641	2	STRG.6507.1,blat.proc3829873.chain_2640	2
scaffold_3	alternate_exon	13987047	13987250	-	asmbl_39267	none	STRG.3738.2,blat.proc3829887.chain_3522	2	blat.proc3829887.chain_3524	1
scaffold_17	alt_donor	2631027	2631028	+	asmbl_17805	none	STRG.20044.1	1	STRG.20044.2,STRG.20044.3,STRG.20044.4,Trinity_GG_10982_c0_g1_i2,Trinity_GG_10982_c0_g1_i4,blat.proc3829881.chain_875,blat.proc3829881.chain_876,blat.proc3829881.chain_878	8
scaffold_12	alt_donor	6420446	6420447	+	asmbl_8646	none	blat.proc3829877.chain_3202	1	STRG.14730.1,STRG.14730.2,STRG.14730.3,STRG.14730.4,Trinity_GG_8129_c0_g1_i5,blat.proc3829877.chain_3201,blat.proc3829877.chain_3203,blat.proc3829877.chain_3204,blat.proc3829877.chain_3205,blat.proc3829877.chain_3206	10
scaffold_17	ends_in_intron	9939979	9939979	+	asmbl_18257	none	blat.proc3829881.chain_1384	1	STRG.20600.1,blat.proc3829881.chain_1385,blat.proc3829881.chain_1389	3
scaffold_27	alt_donor	2814532	2814533	+	asmbl_36082	none	STRG.28742.3	1	STRG.28742.1,STRG.28742.2,STRG.28742.4,blat.proc3829885.chain_1799,blat.proc3829885.chain_1801,blat.proc3829885.chain_1802,blat.proc3829885.chain_1803	7
scaffold_13	starts_in_intron	6571822	6571822	+	asmbl_10927	none	Trinity_GG_8745_c0_g1_i2,blat.proc3829879.chain_602	2	STRG.15930.1,Trinity_GG_8745_c0_g1_i1,blat.proc3829879.chain_601	3
scaffold_4	retained_intron	158350	158690	+	asmbl_42412	none	Trinity_GG_2301_c0_g1_i2,Trinity_GG_2301_c1_g1_i1,blat.proc3829873.chain_495,blat.proc3829873.chain_497	4	STRG.4113.1,blat.proc3829873.chain_496	2
scaffold_1	alternate_exon	920505	921971	+	asmbl_1437	none	STRG.48.2,Trinity_GG_8_c0_g1_i3,blat.proc3829871.chain_17	3	STRG.48.3,blat.proc3829871.chain_15	2
scaffold_6	alt_acceptor	18621667	18621668	+	asmbl_47772	none	STRG.8519.1,Trinity_GG_4677_c0_g1_i1,blat.proc3829875.chain_911	3	STRG.8519.2,Trinity_GG_4677_c0_g1_i2,blat.proc3829875.chain_912	3
scaffold_8	retained_intron	4859932	4860106	-	asmbl_52804	none	blat.proc3829891.chain_2118	1	STRG.9940.1,blat.proc3829891.chain_2117	2
scaffold_3	retained_intron	2264175	2264205	+	asmbl_39857	none	Trinity_GG_1718_c0_g1_i1,blat.proc3829871.chain_3208	2	STRG.3020.1	1
scaffold_24	retained_exon	9592087	9592398	-	asmbl_33129	none	STRG.26924.2	1	STRG.26924.1,blat.proc3829901.chain_225	2
scaffold_22	alternate_exon	761024	761248	+	asmbl_29186	none	STRG.24717.1,Trinity_GG_13667_c0_g1_i1,blat.proc3829883.chain_1771	3	STRG.24717.2	1
scaffold_19	alt_acceptor	12578017	12578018	-	asmbl_21731,asmbl_21732	none	STRG.22574.1,STRG.22574.3	2	STRG.22574.2,blat.proc3829897.chain_3224,blat.proc3829897.chain_3225	3
scaffold_1	spliced_intron	17729072	17729199	+	asmbl_2518	none	STRG.1242.2	1	blat.proc3829871.chain_1306	1
scaffold_2	retained_exon	16861119	16861215	+	asmbl_25182	none	STRG.2599.2,blat.proc3829871.chain_2831	2	STRG.2599.3,blat.proc3829871.chain_2829	2
scaffold_26	alternate_exon	1318707	1322176	-	asmbl_34675	none	STRG.27898.1	1	STRG.27898.2,STRG.27898.3,STRG.27898.4,blat.proc3829901.chain_1142,blat.proc3829901.chain_1144	5
scaffold_9	retained_intron	6902827	6902922	-	asmbl_55050,asmbl_55053,asmbl_55055,asmbl_55056,asmbl_55057,asmbl_55058	none	STRG.11191.3,STRG.11191.4,blat.proc3829891.chain_3366,blat.proc3829891.chain_3371,blat.proc3829891.chain_3374,blat.proc3829891.chain_3375	6	STRG.11191.1,STRG.11191.2,STRG.11191.5,blat.proc3829891.chain_3367,blat.proc3829891.chain_3368,blat.proc3829891.chain_3369,blat.proc3829891.chain_3370,blat.proc3829891.chain_3372,blat.proc3829891.chain_3373	9
scaffold_17	alt_acceptor	12365065	12365066	+	asmbl_18408	none	Trinity_GG_11376_c0_g1_i3,blat.proc3829881.chain_1560	2	STRG.20775.1,blat.proc3829881.chain_1561	2
scaffold_26	spliced_intron	2261353	2261420	+	asmbl_35270	none	STRG.27940.2	1	STRG.27940.1	1
scaffold_9	ends_in_intron	9733999	9733999	+	asmbl_54232	none	STRG.11341.2,blat.proc3829877.chain_149	2	STRG.11341.1,STRG.11341.3,STRG.11341.4,blat.proc3829877.chain_145,blat.proc3829877.chain_146,blat.proc3829877.chain_148,blat.proc3829877.chain_150,blat.proc3829877.chain_151,blat.proc3829877.chain_153	9
scaffold_16	alt_donor	4149517	4149518	+	asmbl_16971,asmbl_16972	none	STRG.19218.2,STRG.19218.3	2	STRG.19218.1,Trinity_GG_10518_c0_g1_i2,blat.proc3829881.chain_44	3
scaffold_13	retained_intron	394206	394756	-	asmbl_9305,asmbl_9312,asmbl_9313	none	Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i25,Trinity_GG_25691_c0_g1_i7,blat.proc3829895.chain_223,blat.proc3829895.chain_229,blat.proc3829895.chain_232	6	STRG.15428.1,STRG.15428.2,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i8,blat.proc3829895.chain_226,blat.proc3829895.chain_230,blat.proc3829895.chain_233	8
scaffold_12	alt_donor	15087864	15087865	-	asmbl_8181	none	blat.proc3829893.chain_3689	1	STRG.15303.1,STRG.15303.2,blat.proc3829893.chain_3691	3
scaffold_28	alt_acceptor	5249089	5249090	-	asmbl_37596,asmbl_37597,asmbl_37599	none	STRG.29654.1,blat.proc3829901.chain_2693,blat.proc3829901.chain_2695,blat.proc3829901.chain_2696	4	blat.proc3829901.chain_2694	1
scaffold_22	retained_intron	224610	224758	-	asmbl_29836,asmbl_29839	none	STRG.24671.2,Trinity_GG_30815_c0_g1_i2,Trinity_GG_30815_c0_g1_i5,blat.proc3829899.chain_1814,blat.proc3829899.chain_1815	5	STRG.24671.1,STRG.24671.3,Trinity_GG_30815_c0_g1_i1,Trinity_GG_30815_c0_g1_i3,blat.proc3829899.chain_1813,blat.proc3829899.chain_1816	6
scaffold_5	alt_acceptor	9328140	9328141	-	asmbl_45653	none	blat.proc3829889.chain_2320	1	STRG.6250.2	1
scaffold_20	starts_in_intron	7186139	7186139	-	asmbl_26805	none	blat.proc3829899.chain_302	1	STRG.23274.1,blat.proc3829899.chain_304,blat.proc3829899.chain_306	3
scaffold_6	starts_in_intron	4317854	4317854	+	asmbl_46826	none	blat.proc3829873.chain_3511	1	STRG.7402.1,STRG.7402.2,Trinity_GG_4053_c2_g1_i2,blat.proc3829873.chain_3510,blat.proc3829873.chain_3512,blat.proc3829873.chain_3513,blat.proc3829873.chain_3514	7
scaffold_27	ends_in_intron	160293	160293	-	asmbl_36606	none	STRG.28532.2	1	STRG.28532.1,Trinity_GG_32958_c0_g1_i1,blat.proc3829901.chain_1697	3
scaffold_14	ends_in_intron	8401484	8401484	-	asmbl_13288	none	Trinity_GG_26707_c0_g1_i2,blat.proc3829895.chain_1980	2	STRG.17262.2,blat.proc3829895.chain_1979,blat.proc3829895.chain_1981	3
scaffold_15	skipped_exon	15188079	15189525	+	asmbl_14681,asmbl_14690	none	blat.proc3829879.chain_3473,blat.proc3829879.chain_3487	2	STRG.18906.1,STRG.18906.2,STRG.18906.3,blat.proc3829879.chain_3471,blat.proc3829879.chain_3474,blat.proc3829879.chain_3475,blat.proc3829879.chain_3476,blat.proc3829879.chain_3479,blat.proc3829879.chain_3481,blat.proc3829879.chain_3482,blat.proc3829879.chain_3484	11
scaffold_14	alternate_exon	2379503	2379770	-	asmbl_12918,asmbl_12921	none	STRG.16839.3,STRG.16839.6	2	STRG.16839.4,STRG.16839.7	2
scaffold_18	spliced_intron	4848613	4848998	+	asmbl_20600	none	STRG.21267.1,Trinity_GG_11716_c0_g1_i1,Trinity_GG_11716_c0_g1_i7,blat.proc3829881.chain_2169,blat.proc3829881.chain_2173	5	STRG.21267.2,Trinity_GG_11716_c0_g1_i2,Trinity_GG_11716_c0_g1_i5,blat.proc3829881.chain_2172,blat.proc3829881.chain_2174	5
scaffold_6	starts_in_intron	11115647	11115647	-	asmbl_48676,asmbl_48677	none	STRG.7918.2,Trinity_GG_21518_c0_g1_i4,blat.proc3829891.chain_215	3	STRG.7918.1,STRG.7918.3	2
scaffold_28	spliced_intron	221848	222198	-	asmbl_37223	none	STRG.29227.2	1	STRG.29227.1,STRG.29227.3	2
scaffold_23	retained_intron	1576504	1576610	+	asmbl_30647	none	Trinity_GG_14161_c0_g1_i2,blat.proc3829883.chain_2541	2	STRG.25617.1,blat.proc3829883.chain_2542	2
scaffold_5	alt_donor	14696723	14696724	+	asmbl_44626	none	STRG.6664.2	1	STRG.6664.1,blat.proc3829873.chain_2782	2
scaffold_28	spliced_intron	105779	105881	-	asmbl_37214,asmbl_37215,asmbl_37217	none	STRG.29229.1,STRG.29229.2,blat.proc3829901.chain_2341,blat.proc3829901.chain_2342	4	blat.proc3829901.chain_2343	1
scaffold_1	ends_in_intron	5222053	5222053	-	asmbl_254	none	blat.proc3829887.chain_155	1	STRG.327.1,blat.proc3829887.chain_154	2
scaffold_13	ends_in_intron	14563273	14563273	-	asmbl_10168	none	Trinity_GG_26221_c0_g2_i1,blat.proc3829895.chain_1173	2	STRG.16497.4	1
scaffold_19	spliced_intron	13029049	13029345	-	asmbl_21803,asmbl_21804	none	STRG.22614.1,STRG.22614.3,Trinity_GG_29611_c1_g1_i1,blat.proc3829897.chain_3395	4	Trinity_GG_29611_c1_g1_i2,blat.proc3829897.chain_3394	2
scaffold_6	alternate_exon	13274472	13274549	+	asmbl_47455,asmbl_47456	none	STRG.8085.2,blat.proc3829875.chain_492	2	STRG.8085.3,blat.proc3829875.chain_490	2
scaffold_7	ends_in_intron	712342	712342	-	asmbl_49510	none	blat.proc3829891.chain_982	1	STRG.8600.1,blat.proc3829891.chain_978,blat.proc3829891.chain_979,blat.proc3829891.chain_980	4
scaffold_3	ends_in_intron	4683714	4683714	+	asmbl_39986	none	STRG.3162.1	1	STRG.3162.2	1
scaffold_15	spliced_intron	13325170	13325463	+	asmbl_14571,asmbl_14575,asmbl_14580,asmbl_14581	none	STRG.18763.1,Trinity_GG_10264_c0_g1_i2,blat.proc3829879.chain_3300,blat.proc3829879.chain_3301,blat.proc3829879.chain_3302	5	Trinity_GG_10264_c0_g1_i4,Trinity_GG_10264_c0_g1_i6,blat.proc3829879.chain_3296,blat.proc3829879.chain_3297,blat.proc3829879.chain_3298,blat.proc3829879.chain_3299,blat.proc3829879.chain_3303,blat.proc3829879.chain_3304	8
scaffold_7	starts_in_intron	8521246	8521246	+	asmbl_50898	none	blat.proc3829875.chain_1554	1	STRG.9071.1,STRG.9071.2,Trinity_GG_5046_c0_g1_i2,blat.proc3829875.chain_1553	4
scaffold_25	alt_donor	5158049	5158050	-	asmbl_34230	none	blat.proc3829901.chain_743	1	STRG.27422.1,blat.proc3829901.chain_742,blat.proc3829901.chain_746,blat.proc3829901.chain_747,blat.proc3829901.chain_749	5
scaffold_15	alt_donor	6961079	6961080	+	asmbl_14212,asmbl_14214,asmbl_14215	none	STRG.18295.1,blat.proc3829879.chain_2930,blat.proc3829879.chain_2933	3	STRG.18295.2	1
scaffold_13	starts_in_intron	384910	384910	-	asmbl_9301	none	blat.proc3829895.chain_131	1	STRG.15422.1,STRG.15422.2,blat.proc3829895.chain_128,blat.proc3829895.chain_130,blat.proc3829895.chain_132	5
scaffold_23	alt_acceptor	2325275	2325276	+	asmbl_30696	none	STRG.25684.2	1	STRG.25684.1,Trinity_GG_14178_c0_g1_i3	2
scaffold_1	retained_intron	20498696	20498844	-	asmbl_1182	none	STRG.1401.1,blat.proc3829887.chain_1281	2	blat.proc3829887.chain_1280	1
scaffold_7	retained_intron	16829502	16829802	-	asmbl_50240	none	Trinity_GG_22380_c0_g1_i2,blat.proc3829891.chain_1791	2	STRG.9583.1,Trinity_GG_22380_c0_g1_i1,blat.proc3829891.chain_1790	3
scaffold_5	retained_intron	5985954	5986256	-	asmbl_45459	none	STRG.6007.1,Trinity_GG_20394_c0_g1_i2,blat.proc3829889.chain_2092	3	STRG.6007.2,blat.proc3829889.chain_2091	2
scaffold_25	retained_intron	3712653	3712743	-	asmbl_34133	none	blat.proc3829901.chain_608	1	STRG.27305.1,blat.proc3829901.chain_609	2
scaffold_13	spliced_intron	8952103	8952193	-	asmbl_9960,asmbl_9962	none	STRG.16152.1,blat.proc3829895.chain_931,blat.proc3829895.chain_933	3	blat.proc3829895.chain_932	1
scaffold_723	alt_acceptor	2511	2512	-	asmbl_51569	none	STRG.30418.1,blat.proc3829901.chain_3463	2	blat.proc3829901.chain_3464	1
scaffold_1	alt_donor	11174211	11174212	+	asmbl_2069	none	STRG.743.4	1	STRG.743.2,blat.proc3829871.chain_814	2
scaffold_5	starts_in_intron	10195024	10195024	-	asmbl_45701	none	blat.proc3829889.chain_2392	1	STRG.6312.1,blat.proc3829889.chain_2386,blat.proc3829889.chain_2387,blat.proc3829889.chain_2388,blat.proc3829889.chain_2389,blat.proc3829889.chain_2390,blat.proc3829889.chain_2391,blat.proc3829889.chain_2393,blat.proc3829889.chain_2394	9
scaffold_4	alt_donor	19018074	19018075	-	asmbl_42145,asmbl_42146	none	STRG.5483.2,STRG.5483.3	2	STRG.5483.4	1
scaffold_4	retained_intron	12380946	12380988	-	asmbl_41653,asmbl_41654	none	STRG.4873.1,Trinity_GG_19731_c0_g1_i2,blat.proc3829889.chain_938,blat.proc3829889.chain_939	4	STRG.4873.2	1
scaffold_6	spliced_intron	2909228	2909325	+	asmbl_46733,asmbl_46734,asmbl_46735	none	STRG.7289.2,blat.proc3829873.chain_3369,blat.proc3829873.chain_3373	3	Trinity_GG_3977_c0_g1_i5,blat.proc3829873.chain_3368	2
scaffold_5	retained_exon	10421235	10421280	-	asmbl_45741	none	STRG.6328.1,blat.proc3829889.chain_2421	2	STRG.6328.2,blat.proc3829889.chain_2422	2
scaffold_4	retained_exon	1877964	1878008	+	asmbl_42459	none	STRG.4206.1,blat.proc3829873.chain_547	2	STRG.4206.2,blat.proc3829873.chain_548	2
scaffold_28	spliced_intron	6515507	6515534	-	asmbl_37673	none	STRG.29726.2	1	STRG.29726.1,STRG.29726.3	2
scaffold_25	alt_acceptor	3820485	3820486	-	asmbl_34140,asmbl_34143	none	STRG.27321.1,Trinity_GG_32309_c0_g1_i2,Trinity_GG_32309_c0_g1_i3,blat.proc3829901.chain_622,blat.proc3829901.chain_623	5	STRG.27321.2	1
scaffold_13	alt_acceptor	381828	381829	-	asmbl_9292	none	STRG.15421.4,blat.proc3829895.chain_150	2	STRG.15421.1,STRG.15421.3,blat.proc3829895.chain_149	3
scaffold_6	alt_acceptor	12628110	12628111	-	asmbl_48775	none	blat.proc3829891.chain_255	1	STRG.8013.1,STRG.8013.2,Trinity_GG_21546_c0_g1_i1,Trinity_GG_21546_c0_g1_i2,blat.proc3829891.chain_252,blat.proc3829891.chain_253,blat.proc3829891.chain_254,blat.proc3829891.chain_256,blat.proc3829891.chain_257	9
scaffold_2	starts_in_intron	15868574	15868574	+	asmbl_25103	none	Trinity_GG_1445_c1_g1_i2,blat.proc3829871.chain_2735	2	STRG.2536.1,blat.proc3829871.chain_2736	2
scaffold_27	spliced_intron	3024966	3025670	+	asmbl_36131	none	blat.proc3829885.chain_1779	1	blat.proc3829885.chain_1780	1
scaffold_12	alt_donor	7335637	7335638	+	asmbl_8708,asmbl_8709	none	STRG.14799.1,STRG.14799.2,blat.proc3829877.chain_3297	3	STRG.14799.3,blat.proc3829877.chain_3296	2
scaffold_15	spliced_intron	1598964	1599034	+	asmbl_13964	none	STRG.17953.1,blat.proc3829879.chain_2650	2	blat.proc3829879.chain_2651	1
scaffold_5	spliced_intron	6847775	6848001	+	asmbl_44113	none	STRG.6086.1,blat.proc3829873.chain_2198	2	blat.proc3829873.chain_2199	1
scaffold_11	retained_intron	10398883	10399063	+	asmbl_5908	none	blat.proc3829877.chain_2428	1	STRG.14037.2,blat.proc3829877.chain_2427	2
scaffold_1	alt_donor	12754534	12754535	+	asmbl_2236	none	STRG.893.3,Trinity_GG_528_c0_g1_i1,blat.proc3829871.chain_951	3	STRG.893.2	1
scaffold_21	alternate_exon	5791119	5791543	-	asmbl_27725	none	STRG.24095.2,blat.proc3829899.chain_1189	2	STRG.24095.1,blat.proc3829899.chain_1190	2
scaffold_9	ends_in_intron	1686253	1686253	-	asmbl_54804	none	Trinity_GG_23000_c1_g1_i1,blat.proc3829891.chain_2951	2	STRG.10853.1,Trinity_GG_23000_c0_g1_i1,blat.proc3829891.chain_2949	3
scaffold_14	alt_acceptor	1590407	1590408	-	asmbl_12877	none	STRG.16786.4	1	STRG.16786.1,STRG.16786.2,STRG.16786.3,STRG.16786.5,blat.proc3829895.chain_1442,blat.proc3829895.chain_1443,blat.proc3829895.chain_1444	7
scaffold_3	ends_in_intron	11504821	11504821	+	asmbl_40308	none	Trinity_GG_1991_c0_g1_i3,blat.proc3829871.chain_3694	2	STRG.3582.1,blat.proc3829871.chain_3696	2
scaffold_19	alt_donor	12580922	12580923	-	asmbl_21734	none	STRG.22575.1	1	STRG.22575.2	1
scaffold_4	spliced_intron	13762015	13762163	-	asmbl_41748,asmbl_41749,asmbl_41750,asmbl_41752	none	STRG.4997.1,STRG.4997.2,STRG.4997.3,blat.proc3829889.chain_1048,blat.proc3829889.chain_1049,blat.proc3829889.chain_1050	6	blat.proc3829889.chain_1051	1
scaffold_15	retained_intron	7840903	7841007	+	asmbl_14250	none	blat.proc3829879.chain_2999	1	STRG.18352.1,blat.proc3829879.chain_3000,blat.proc3829879.chain_3001	3
scaffold_21	alt_donor	56788	56789	-	asmbl_27298,asmbl_27299,asmbl_27301	none	STRG.23706.1,STRG.23706.2,blat.proc3829899.chain_733,blat.proc3829899.chain_734,blat.proc3829899.chain_735	5	STRG.23706.3,blat.proc3829899.chain_736	2
scaffold_19	skipped_exon	3683129	3683854	+	asmbl_22132,asmbl_22133,asmbl_22135	none	STRG.22046.1,STRG.22046.3,STRG.22046.4	3	STRG.22046.2,STRG.22046.6	2
scaffold_9	alternate_exon	571141	571174	+	asmbl_53753	none	blat.proc3829875.chain_3224	1	STRG.10779.1,STRG.10779.3	2
scaffold_17	skipped_exon	13972254	13973688	-	asmbl_19445	none	STRG.20876.4	1	STRG.20876.1,STRG.20876.2,blat.proc3829897.chain_1764,blat.proc3829897.chain_1766	4
scaffold_13	starts_in_intron	11946236	11946236	-	asmbl_10076	none	STRG.16316.3	1	STRG.16316.1,STRG.16316.2,Trinity_GG_26156_c0_g1_i3,blat.proc3829895.chain_1071,blat.proc3829895.chain_1072	5
scaffold_1	starts_in_intron	1257098	1257098	-	asmbl_57	none	blat.proc3829885.chain_3673	1	STRG.75.1,blat.proc3829885.chain_3671	2
scaffold_8	ends_in_intron	12911302	12911302	-	asmbl_53254,asmbl_53262	none	STRG.10471.4,Trinity_GG_22811_c2_g1_i1,blat.proc3829891.chain_2570	3	STRG.10471.2,STRG.10471.3	2
scaffold_1	spliced_intron	14358804	14358965	+	asmbl_2368	none	blat.proc3829871.chain_1122	1	STRG.1032.1,STRG.1032.2,Trinity_GG_620_c0_g1_i4,blat.proc3829871.chain_1120,blat.proc3829871.chain_1121,blat.proc3829871.chain_1123	6
scaffold_14	spliced_intron	11676499	11677256	-	asmbl_13505	none	STRG.17497.1,blat.proc3829895.chain_2192	2	STRG.17497.3,blat.proc3829895.chain_2193	2
scaffold_23	retained_intron	1399387	1399546	-	asmbl_31358	none	Trinity_GG_31310_c0_g1_i2,blat.proc3829899.chain_2680	2	STRG.25592.1,blat.proc3829899.chain_2679	2
scaffold_3	alt_donor	4304779	4304780	-	asmbl_38754	none	STRG.3128.1	1	STRG.3128.2	1
scaffold_3	retained_intron	14259715	14259877	+	asmbl_40462,asmbl_40464,asmbl_40467	none	STRG.3764.1,STRG.3764.4,Trinity_GG_2074_c0_g1_i1,Trinity_GG_2074_c0_g1_i4,blat.proc3829873.chain_102,blat.proc3829873.chain_103,blat.proc3829873.chain_105	7	blat.proc3829873.chain_106	1
scaffold_1	ends_in_intron	11708737	11708737	+	asmbl_2120	none	STRG.783.1	1	blat.proc3829871.chain_830	1
scaffold_18	ends_in_intron	8726700	8726700	+	asmbl_20887	none	blat.proc3829881.chain_2482	1	STRG.21533.1,STRG.21533.2,STRG.21533.3,STRG.21533.5,blat.proc3829881.chain_2483,blat.proc3829881.chain_2484,blat.proc3829881.chain_2485,blat.proc3829881.chain_2486,blat.proc3829881.chain_2488	9
scaffold_3	starts_in_intron	1756101	1756101	+	asmbl_39827	none	blat.proc3829871.chain_3179	1	STRG.2991.1,blat.proc3829871.chain_3180,blat.proc3829871.chain_3181,blat.proc3829871.chain_3185	4
scaffold_4	alt_donor	7543959	7543960	+	asmbl_42840	none	STRG.4589.1	1	STRG.4589.2,blat.proc3829873.chain_971	2
scaffold_12	spliced_intron	12287762	12287963	-	asmbl_7985,asmbl_7986,asmbl_7988,asmbl_7991	none	STRG.15114.1,STRG.15114.2,STRG.15114.3,STRG.15114.6	4	STRG.15114.4,STRG.15114.5,Trinity_GG_25420_c0_g1_i2,blat.proc3829893.chain_3461	4
scaffold_14	alt_donor	12707673	12707674	-	asmbl_13575	none	STRG.17568.2	1	STRG.17568.1	1
scaffold_21	starts_in_intron	6437604	6437604	+	asmbl_28662	none	Trinity_GG_13377_c0_g1_i3,blat.proc3829883.chain_1286	2	STRG.24150.1	1
scaffold_23	starts_in_intron	9833961	9833961	-	asmbl_31827	none	Trinity_GG_31641_c0_g1_i3,blat.proc3829899.chain_3266	2	STRG.26161.1	1
scaffold_5	retained_intron	5063957	5064081	-	asmbl_45416	none	Trinity_GG_20370_c0_g1_i1,blat.proc3829889.chain_2048	2	STRG.5956.1,blat.proc3829889.chain_2049	2
scaffold_11	alt_donor	1984065	1984066	-	asmbl_6440,asmbl_6441	none	STRG.13349.1,blat.proc3829893.chain_1817	2	STRG.13349.2,Trinity_GG_24491_c0_g1_i5,blat.proc3829893.chain_1814,blat.proc3829893.chain_1815	4
scaffold_1	alt_acceptor	20350986	20350987	+	asmbl_2606,asmbl_2608	none	STRG.1398.3,STRG.1398.5	2	STRG.1398.2,STRG.1398.4,STRG.1398.6	3
scaffold_2	alt_acceptor	9322220	9322221	-	asmbl_23399	none	STRG.2176.4	1	STRG.2176.2	1
scaffold_12	spliced_intron	14045126	14045217	-	asmbl_8092,asmbl_8095	none	STRG.15216.1,STRG.15216.5,blat.proc3829893.chain_3661	3	STRG.15216.2,STRG.15216.3,blat.proc3829893.chain_3658,blat.proc3829893.chain_3662	4
scaffold_15	alt_acceptor	2799768	2799769	+	asmbl_14020,asmbl_14021,asmbl_14022	none	STRG.18051.1,blat.proc3829879.chain_2695,blat.proc3829879.chain_2696,blat.proc3829879.chain_2697	4	STRG.18051.2	1
scaffold_15	retained_intron	16366344	16366420	-	asmbl_15847,asmbl_15849	none	STRG.18980.2,Trinity_GG_27641_c0_g1_i2,blat.proc3829895.chain_3697	3	STRG.18980.1,Trinity_GG_27641_c0_g1_i1,blat.proc3829895.chain_3698	3
scaffold_26	alternate_exon	3668378	3672078	+	asmbl_35342	none	blat.proc3829885.chain_1029	1	Trinity_GG_15479_c1_g1_i2,blat.proc3829885.chain_1031	2
scaffold_13	spliced_intron	7217965	7219584	+	asmbl_11007,asmbl_11008,asmbl_11010,asmbl_11011,asmbl_11012	none	STRG.16002.1,blat.proc3829879.chain_695,blat.proc3829879.chain_698,blat.proc3829879.chain_699,blat.proc3829879.chain_700,blat.proc3829879.chain_701	6	STRG.16002.2,Trinity_GG_8782_c0_g1_i1,blat.proc3829879.chain_697	3
scaffold_13	skipped_exon	12251472	12253713	+	asmbl_11334	none	STRG.16339.3	1	STRG.16339.1,Trinity_GG_8947_c0_g1_i3,blat.proc3829879.chain_1007	3
scaffold_1	alternate_exon	16859207	16859231	+	asmbl_2494	none	STRG.1186.2	1	blat.proc3829871.chain_1283	1
scaffold_11	spliced_intron	13384103	13384406	+	asmbl_6029	none	STRG.14189.2,blat.proc3829877.chain_2692	2	STRG.14189.1,STRG.14189.3,blat.proc3829877.chain_2694	3
scaffold_19	ends_in_intron	11490123	11490123	+	asmbl_22509,asmbl_22513	none	Trinity_GG_12429_c0_g1_i3,blat.proc3829881.chain_3408,blat.proc3829881.chain_3410	3	STRG.22478.1,Trinity_GG_12429_c0_g1_i4,blat.proc3829881.chain_3407	3
scaffold_8	starts_in_intron	12321044	12321044	-	asmbl_53188	none	blat.proc3829891.chain_2528	1	STRG.10399.1,blat.proc3829891.chain_2530,blat.proc3829891.chain_2531	3
scaffold_23	spliced_intron	10977777	10977923	+	asmbl_31185,asmbl_31186,asmbl_31191,asmbl_31193	none	STRG.26281.1,STRG.26281.2,Trinity_GG_14524_c0_g1_i13,Trinity_GG_14524_c0_g1_i9,blat.proc3829883.chain_3194,blat.proc3829883.chain_3195,blat.proc3829883.chain_3201	7	Trinity_GG_14524_c0_g1_i12,Trinity_GG_14524_c0_g1_i8,blat.proc3829883.chain_3192,blat.proc3829883.chain_3193,blat.proc3829883.chain_3197,blat.proc3829883.chain_3199,blat.proc3829883.chain_3200,blat.proc3829883.chain_3203	8
scaffold_24	skipped_exon	7733066	7734328	-	asmbl_33044	none	STRG.26803.2	1	STRG.26803.1,Trinity_GG_32007_c0_g1_i4	2
scaffold_13	starts_in_intron	3523950	3523950	-	asmbl_9507,asmbl_9508	none	STRG.15654.1,STRG.15654.3,blat.proc3829895.chain_399,blat.proc3829895.chain_400	4	STRG.15654.2	1
scaffold_19	alternate_exon	12487093	12487324	-	asmbl_21714	none	blat.proc3829897.chain_3288	1	STRG.22567.1,blat.proc3829897.chain_3286	2
scaffold_14	alt_acceptor	1132381	1132382	-	asmbl_12842	none	STRG.16759.1,Trinity_GG_26404_c0_g1_i3,blat.proc3829895.chain_1475	3	STRG.16759.2,Trinity_GG_26404_c0_g1_i2,blat.proc3829895.chain_1476	3
scaffold_26	retained_exon	1995175	1995221	+	asmbl_35258	none	blat.proc3829885.chain_907	1	STRG.27926.1	1
scaffold_18	alt_acceptor	7867987	7867988	+	asmbl_20826	none	STRG.21477.5,blat.proc3829881.chain_2470	2	STRG.21477.1,STRG.21477.6,Trinity_GG_11877_c0_g1_i12,Trinity_GG_11877_c0_g1_i6,blat.proc3829881.chain_2473,blat.proc3829881.chain_2474,blat.proc3829881.chain_2475,blat.proc3829881.chain_2476	8
scaffold_13	starts_in_intron	6383554	6383554	-	asmbl_9742	none	blat.proc3829895.chain_702	1	STRG.15913.1,Trinity_GG_25973_c1_g1_i2,blat.proc3829895.chain_700,blat.proc3829895.chain_701	4
scaffold_13	alt_acceptor	7085246	7085247	-	asmbl_9809	none	STRG.16000.2	1	STRG.16000.1,blat.proc3829895.chain_774	2
scaffold_21	spliced_intron	706527	706986	-	asmbl_27377	none	STRG.23751.1,blat.proc3829899.chain_811	2	STRG.23751.2,blat.proc3829899.chain_814	2
scaffold_15	retained_exon	2567077	2567199	-	asmbl_15029,asmbl_15030,asmbl_15031	none	STRG.18037.1,STRG.18037.2,STRG.18037.5,blat.proc3829895.chain_2773,blat.proc3829895.chain_2774,blat.proc3829895.chain_2775	6	STRG.18037.3,STRG.18037.4	2
scaffold_20	retained_intron	2137292	2137342	+	asmbl_25631	none	STRG.22939.2,Trinity_GG_12651_c1_g1_i1,blat.proc3829883.chain_81	3	STRG.22939.1	1
scaffold_19	alternate_exon	7583511	7584123	+	asmbl_22277	none	blat.proc3829881.chain_3173	1	blat.proc3829881.chain_3174	1
scaffold_15	alt_acceptor	1696485	1696486	+	asmbl_13972	none	STRG.17962.2	1	STRG.17962.1,blat.proc3829879.chain_2664	2
scaffold_5	starts_in_intron	16314389	16314389	+	asmbl_44747	none	blat.proc3829873.chain_2900	1	STRG.6820.1,blat.proc3829873.chain_2898,blat.proc3829873.chain_2899,blat.proc3829873.chain_2901	4
scaffold_22	alternate_exon	5937043	5938083	+	asmbl_29366	none	STRG.24924.2,Trinity_GG_13747_c3_g1_i1,blat.proc3829883.chain_1919	3	STRG.24924.1,Trinity_GG_13747_c2_g1_i1,blat.proc3829883.chain_1918	3
scaffold_20	alt_donor	2765409	2765410	-	asmbl_26598	none	STRG.23004.6	1	STRG.23004.4,STRG.23004.5	2
scaffold_24	spliced_intron	7864239	7864383	-	asmbl_33063	none	STRG.26822.2,blat.proc3829901.chain_132	2	STRG.26822.1,blat.proc3829901.chain_131	2
scaffold_14	alt_acceptor	7473910	7473911	-	asmbl_13196,asmbl_13199	none	STRG.17176.2,STRG.17176.3,blat.proc3829895.chain_1878	3	STRG.17176.1	1
scaffold_8	skipped_exon	6902999	6903581	+	asmbl_51953,asmbl_51955,asmbl_51959,asmbl_51960	none	STRG.10042.1,STRG.10042.2,blat.proc3829875.chain_2536,blat.proc3829875.chain_2537,blat.proc3829875.chain_2541	5	STRG.10042.3,blat.proc3829875.chain_2539	2
scaffold_19	alternate_exon	2780621	2780818	+	asmbl_22082	none	STRG.21950.5	1	STRG.21950.2	1
scaffold_24	retained_intron	5882035	5882303	-	asmbl_32897,asmbl_32900	none	STRG.26634.4,STRG.26634.5,blat.proc3829899.chain_3712	3	STRG.26634.1,STRG.26634.2,STRG.26634.3,blat.proc3829899.chain_3709,blat.proc3829899.chain_3710,blat.proc3829899.chain_3711,blat.proc3829899.chain_3713	7
scaffold_11	spliced_intron	9185416	9185879	-	asmbl_6903	none	STRG.13951.2,Trinity_GG_24785_c0_g1_i1,blat.proc3829893.chain_2344	3	Trinity_GG_24785_c0_g2_i1,blat.proc3829893.chain_2346	2
scaffold_6	spliced_intron	5054843	5054934	-	asmbl_48331,asmbl_48332,asmbl_48336	none	STRG.7479.1,STRG.7479.3,blat.proc3829889.chain_3506,blat.proc3829889.chain_3508	4	STRG.7479.2,Trinity_GG_21226_c0_g1_i11,blat.proc3829889.chain_3509	3
scaffold_28	spliced_intron	4440911	4440975	-	asmbl_37531	none	STRG.29605.2,blat.proc3829901.chain_2735	2	STRG.29605.1,blat.proc3829901.chain_2734	2
scaffold_3	alternate_exon	3244021	3245728	+	asmbl_39898	none	STRG.3087.4,Trinity_GG_1771_c0_g1_i6,blat.proc3829871.chain_3308	3	STRG.3087.5,blat.proc3829871.chain_3305	2
scaffold_28	starts_in_intron	5026739	5026739	+	asmbl_38261	none	Trinity_GG_16373_c2_g1_i5,blat.proc3829885.chain_2644	2	STRG.29640.1,STRG.29640.2,STRG.29640.3,Trinity_GG_16373_c2_g1_i2,blat.proc3829885.chain_2640,blat.proc3829885.chain_2641,blat.proc3829885.chain_2642	7
scaffold_14	spliced_intron	2263794	2264034	-	asmbl_12908	none	STRG.16824.1,blat.proc3829895.chain_1521	2	blat.proc3829895.chain_1520	1
scaffold_2	retained_intron	14193353	14193458	-	asmbl_23582,asmbl_23586	none	blat.proc3829887.chain_2207,blat.proc3829887.chain_2212	2	STRG.2417.1,STRG.2417.2,blat.proc3829887.chain_2208,blat.proc3829887.chain_2209,blat.proc3829887.chain_2210	5
scaffold_14	retained_exon	659132	659204	-	asmbl_12820	none	STRG.16731.1,Trinity_GG_26374_c0_g1_i3,blat.proc3829895.chain_1428	3	Trinity_GG_26374_c0_g1_i1,blat.proc3829895.chain_1429	2
scaffold_1	retained_intron	6299655	6299772	-	asmbl_353,asmbl_358	none	STRG.424.1,STRG.424.3,blat.proc3829887.chain_304,blat.proc3829887.chain_307	4	STRG.424.2,STRG.424.5,blat.proc3829887.chain_303,blat.proc3829887.chain_306	4
scaffold_1	alternate_exon	2739984	2746610	-	asmbl_123,asmbl_128	none	STRG.173.1,STRG.173.4,blat.proc3829887.chain_55,blat.proc3829887.chain_56	4	STRG.173.5,Trinity_GG_17107_c0_g1_i3	2
scaffold_8	spliced_intron	18541820	18542760	+	asmbl_52556	none	STRG.10744.2,blat.proc3829875.chain_3175	2	STRG.10744.1,blat.proc3829875.chain_3174	2
scaffold_10	starts_in_intron	12729844	12729844	-	asmbl_3724	none	blat.proc3829893.chain_1369	1	blat.proc3829893.chain_1368	1
scaffold_15	starts_in_intron	12433531	12433531	+	asmbl_14511,asmbl_14512	none	blat.proc3829879.chain_3278,blat.proc3829879.chain_3282	2	STRG.18688.1,blat.proc3829879.chain_3280,blat.proc3829879.chain_3286	3
scaffold_2	starts_in_intron	886090	886090	+	asmbl_24141	none	Trinity_GG_868_c0_g1_i1,blat.proc3829871.chain_1568	2	STRG.1563.2,STRG.1563.3,blat.proc3829871.chain_1566	3
scaffold_732	spliced_intron	766	906	+	asmbl_51586	none	STRG.30424.1,blat.proc3829885.chain_3427,blat.proc3829885.chain_3428,blat.proc3829885.chain_3430	4	Trinity_GG_16829_c0_g1_i8,Trinity_GG_33940_c0_g1_i2	2
scaffold_18	spliced_intron	5583163	5583302	+	asmbl_20622	none	STRG.21298.2	1	STRG.21298.1,Trinity_GG_11734_c0_g1_i1,Trinity_GG_11734_c0_g1_i2,Trinity_GG_11734_c1_g1_i1,blat.proc3829881.chain_2221,blat.proc3829881.chain_2222,blat.proc3829881.chain_2223	7
scaffold_20	spliced_intron	11599629	11600558	-	asmbl_27096	none	STRG.23657.2	1	STRG.23657.1	1
scaffold_18	retained_intron	4571830	4572199	+	asmbl_20564	none	blat.proc3829881.chain_2154	1	STRG.21237.1,STRG.21237.2,blat.proc3829881.chain_2151,blat.proc3829881.chain_2152,blat.proc3829881.chain_2153	5
scaffold_9	starts_in_intron	8941667	8941667	-	asmbl_55116	none	blat.proc3829891.chain_3364	1	STRG.11268.1,STRG.11268.2,blat.proc3829891.chain_3362,blat.proc3829891.chain_3363	4
scaffold_26	ends_in_intron	2269232	2269232	+	asmbl_35274	none	STRG.27951.2,blat.proc3829885.chain_923	2	STRG.27951.5	1
scaffold_9	skipped_exon	644461	645690	+	asmbl_53762	none	STRG.10785.4	1	STRG.10785.1,STRG.10785.2,STRG.10785.3,blat.proc3829875.chain_3238	4
scaffold_16	alt_acceptor	4149798	4149799	+	asmbl_16969	none	STRG.19218.1,Trinity_GG_10518_c0_g1_i2,blat.proc3829881.chain_44	3	STRG.19218.2,STRG.19218.3	2
scaffold_7	skipped_exon	17732017	17733017	+	asmbl_51377	none	blat.proc3829875.chain_2074	1	STRG.9609.1,blat.proc3829875.chain_2072	2
scaffold_22	alternate_exon	5817621	5817793	-	asmbl_30052	none	STRG.24914.1	1	STRG.24914.2	1
scaffold_17	alt_acceptor	2553386	2553387	-	asmbl_18807	none	STRG.20036.1,blat.proc3829897.chain_914	2	blat.proc3829897.chain_915	1
scaffold_21	alt_donor	33428	33429	-	asmbl_27295	none	STRG.23699.1,blat.proc3829899.chain_724	2	STRG.23699.2,blat.proc3829899.chain_726	2
scaffold_5	spliced_intron	7320452	7320503	+	asmbl_44152,asmbl_44154	none	STRG.6121.1,blat.proc3829873.chain_2277	2	Trinity_GG_3345_c0_g2_i1	1
scaffold_8	retained_exon	16040335	16040456	-	asmbl_53355	none	STRG.10578.1,blat.proc3829891.chain_2728	2	STRG.10578.2,blat.proc3829891.chain_2727	2
scaffold_1	starts_in_intron	14193444	14193444	-	asmbl_880	none	blat.proc3829887.chain_949	1	STRG.1005.1,blat.proc3829887.chain_945,blat.proc3829887.chain_947,blat.proc3829887.chain_948	4
scaffold_5	alternate_exon	5737158	5737984	+	asmbl_44025	none	STRG.5984.3,blat.proc3829873.chain_2049	2	STRG.5984.5,blat.proc3829873.chain_2046	2
scaffold_23	starts_in_intron	10938693	10938693	-	asmbl_31891,asmbl_31892	none	STRG.26279.1,STRG.26279.3	2	STRG.26279.2	1
scaffold_8	retained_intron	18248240	18248548	-	asmbl_53533,asmbl_53536,asmbl_53537,asmbl_53538	none	STRG.10723.4,blat.proc3829891.chain_2922,blat.proc3829891.chain_2923,blat.proc3829891.chain_2924	4	STRG.10723.1,STRG.10723.2	2
scaffold_19	starts_in_intron	1496493	1496493	+	asmbl_22046	none	STRG.21905.4	1	STRG.21905.1,STRG.21905.2,blat.proc3829881.chain_2927,blat.proc3829881.chain_2929	4
scaffold_16	retained_intron	4095863	4096600	+	asmbl_16959,asmbl_16964,asmbl_16965,asmbl_16966,asmbl_16968	none	STRG.19214.1,STRG.19214.2,Trinity_GG_10532_c0_g1_i2,blat.proc3829881.chain_77,blat.proc3829881.chain_82	5	STRG.19214.3	1
scaffold_7	alt_acceptor	5224677	5224678	+	asmbl_50679	none	STRG.8851.2	1	STRG.8851.1,blat.proc3829875.chain_1264	2
scaffold_14	spliced_intron	11685485	11685674	-	asmbl_13507,asmbl_13508,asmbl_13509	none	STRG.17500.1,STRG.17500.2,blat.proc3829895.chain_2221,blat.proc3829895.chain_2222,blat.proc3829895.chain_2224	5	blat.proc3829895.chain_2223	1
scaffold_5	alt_donor	5738215	5738216	+	asmbl_44027	none	STRG.5984.4	1	blat.proc3829873.chain_2048	1
scaffold_9	alt_acceptor	7712199	7712200	-	asmbl_55075	none	STRG.11211.1,Trinity_GG_23227_c0_g1_i1,blat.proc3829891.chain_3359	3	STRG.11211.2,Trinity_GG_23227_c0_g1_i3,blat.proc3829891.chain_3358	3
scaffold_15	skipped_exon	15179044	15179381	+	asmbl_14674,asmbl_14675,asmbl_14676,asmbl_14679,asmbl_14680,asmbl_14681,asmbl_14683,asmbl_14684,asmbl_14685,asmbl_14686,asmbl_14688,asmbl_14689,asmbl_14690,asmbl_14691,asmbl_14692	none	STRG.18906.1,STRG.18906.2,STRG.18906.3,blat.proc3829879.chain_3471,blat.proc3829879.chain_3472,blat.proc3829879.chain_3473,blat.proc3829879.chain_3474,blat.proc3829879.chain_3475,blat.proc3829879.chain_3476,blat.proc3829879.chain_3477,blat.proc3829879.chain_3478,blat.proc3829879.chain_3479,blat.proc3829879.chain_3480,blat.proc3829879.chain_3484,blat.proc3829879.chain_3485,blat.proc3829879.chain_3486,blat.proc3829879.chain_3487	17	STRG.18906.4	1
scaffold_1	retained_intron	14323382	14323737	+	asmbl_2361	none	Trinity_GG_621_c0_g1_i1	1	STRG.1024.1,STRG.1024.2,STRG.1024.3,STRG.1024.4,blat.proc3829871.chain_1126,blat.proc3829871.chain_1127,blat.proc3829871.chain_1128,blat.proc3829871.chain_1129,blat.proc3829871.chain_1130	9
scaffold_2	alt_donor	2074349	2074350	+	asmbl_24259	none	STRG.1663.2,Trinity_GG_950_c0_g1_i3,blat.proc3829871.chain_1747	3	STRG.1663.1,Trinity_GG_950_c0_g1_i1,blat.proc3829871.chain_1748	3
scaffold_21	alt_donor	2484567	2484568	-	asmbl_27491	none	STRG.23859.3	1	STRG.23859.1,STRG.23859.4,Trinity_GG_30317_c0_g1_i2,blat.proc3829899.chain_950	4
scaffold_16	alternate_exon	5515034	5515132	-	asmbl_16292	none	STRG.19300.2,blat.proc3829897.chain_292	2	STRG.19300.1,blat.proc3829897.chain_291	2
scaffold_1	spliced_intron	5735334	5735977	+	asmbl_1758,asmbl_1759,asmbl_1762	none	STRG.380.1,STRG.380.2,STRG.380.3,blat.proc3829871.chain_443,blat.proc3829871.chain_446	5	Trinity_GG_251_c0_g1_i1,blat.proc3829871.chain_444,blat.proc3829871.chain_445	3
scaffold_23	retained_intron	2604317	2604475	-	asmbl_31468	none	blat.proc3829899.chain_2818	1	STRG.25703.1,blat.proc3829899.chain_2817	2
scaffold_8	starts_in_intron	17795060	17795060	+	asmbl_52496	none	Trinity_GG_5881_c0_g1_i1,blat.proc3829875.chain_3078	2	STRG.10684.1,Trinity_GG_5881_c0_g1_i3,blat.proc3829875.chain_3073,blat.proc3829875.chain_3074	4
scaffold_11	alt_acceptor	8079245	8079246	-	asmbl_6800,asmbl_6802,asmbl_6805,asmbl_6806,asmbl_6808,asmbl_6817	none	STRG.13802.2,STRG.13802.3,Trinity_GG_24711_c0_g1_i3,Trinity_GG_24711_c0_g1_i7,Trinity_GG_24711_c0_g1_i8,blat.proc3829893.chain_2198,blat.proc3829893.chain_2205,blat.proc3829893.chain_2209,blat.proc3829893.chain_2210,blat.proc3829893.chain_2211	10	Trinity_GG_24711_c0_g1_i4,blat.proc3829893.chain_2202	2
scaffold_15	retained_intron	15409993	15410185	+	asmbl_14720	none	blat.proc3829879.chain_3516	1	STRG.18921.6	1
scaffold_3	starts_in_intron	14520469	14520469	-	asmbl_39338	none	Trinity_GG_19119_c0_g1_i5,blat.proc3829887.chain_3619	2	STRG.3789.1,Trinity_GG_19119_c0_g1_i1,Trinity_GG_19119_c0_g1_i2,blat.proc3829887.chain_3616,blat.proc3829887.chain_3617	5
scaffold_7	retained_exon	10300971	10301039	+	asmbl_50989	none	STRG.9199.2,blat.proc3829875.chain_1640	2	STRG.9199.1,blat.proc3829875.chain_1639	2
scaffold_1	alt_donor	14416640	14416641	-	asmbl_921	none	STRG.1035.2	1	STRG.1035.1,blat.proc3829887.chain_936	2
scaffold_3	ends_in_intron	12009531	12009531	+	asmbl_40344	none	blat.proc3829871.chain_3719	1	STRG.3624.1,blat.proc3829871.chain_3718	2
scaffold_19	alternate_exon	1066054	1066175	-	asmbl_21222	none	STRG.21881.1	1	STRG.21881.2,blat.proc3829897.chain_2636	2
scaffold_6	ends_in_intron	297882	297882	+	asmbl_46602	none	blat.proc3829873.chain_3255	1	STRG.7082.1,STRG.7082.2,STRG.7082.3,STRG.7082.4,Trinity_GG_3916_c0_g1_i2,Trinity_GG_3916_c0_g1_i3,Trinity_GG_3916_c0_g1_i8,blat.proc3829873.chain_3249,blat.proc3829873.chain_3251,blat.proc3829873.chain_3252	10
scaffold_3	ends_in_intron	16006381	16006381	-	asmbl_39419	none	Trinity_GG_19148_c0_g1_i3,blat.proc3829887.chain_3671	2	STRG.3874.1,blat.proc3829887.chain_3673	2
scaffold_13	alternate_exon	13972132	13972495	+	asmbl_11395	none	STRG.16435.3,Trinity_GG_9032_c1_g1_i1	2	blat.proc3829879.chain_1167,blat.proc3829879.chain_1168,blat.proc3829879.chain_1169	3
scaffold_9	retained_exon	9692063	9692107	-	asmbl_55200,asmbl_55201,asmbl_55203,asmbl_55204	none	STRG.11334.1,STRG.11334.2,blat.proc3829891.chain_3512,blat.proc3829891.chain_3513,blat.proc3829891.chain_3514,blat.proc3829891.chain_3515	6	STRG.11334.3	1
scaffold_1	alt_donor	15888360	15888361	+	asmbl_2437	none	Trinity_GG_643_c0_g1_i2,blat.proc3829871.chain_1171	2	STRG.1117.1,STRG.1117.3,Trinity_GG_643_c0_g1_i1,blat.proc3829871.chain_1170	4
scaffold_4	retained_exon	13430086	13430250	+	asmbl_43128,asmbl_43129,asmbl_43130	none	STRG.4980.1,STRG.4980.2,STRG.4980.3	3	STRG.4980.4	1
scaffold_3	alternate_exon	13986481	13986762	-	asmbl_39269	none	blat.proc3829887.chain_3524	1	STRG.3738.2,blat.proc3829887.chain_3522	2
scaffold_14	spliced_intron	4116785	4116951	+	asmbl_11946,asmbl_11947,asmbl_11949,asmbl_11950	none	STRG.16951.1,STRG.16951.2,STRG.16951.3,STRG.16951.4,Trinity_GG_9333_c0_g1_i1,Trinity_GG_9333_c0_g1_i3,Trinity_GG_9333_c0_g1_i5,Trinity_GG_9333_c0_g1_i7,blat.proc3829879.chain_1688,blat.proc3829879.chain_1689,blat.proc3829879.chain_1690,blat.proc3829879.chain_1691	12	STRG.16951.5,Trinity_GG_9333_c0_g1_i4,blat.proc3829879.chain_1686	3
scaffold_11	alternate_exon	11784315	11785874	+	asmbl_5961,asmbl_5963,asmbl_5965	none	STRG.14087.1,STRG.14087.2,STRG.14087.5	3	STRG.14087.3	1
scaffold_17	alt_acceptor	2432602	2432603	+	asmbl_17780,asmbl_17782	none	STRG.20019.2,STRG.20019.4,Trinity_GG_10968_c0_g1_i4,blat.proc3829881.chain_848	4	STRG.20019.1,STRG.20019.3,Trinity_GG_10968_c0_g1_i2,blat.proc3829881.chain_846	4
scaffold_12	starts_in_intron	9687872	9687872	-	asmbl_7819,asmbl_7823	none	STRG.14929.5,blat.proc3829893.chain_3333	2	STRG.14929.1,STRG.14929.2,STRG.14929.3,STRG.14929.4,Trinity_GG_25344_c0_g1_i1,Trinity_GG_25344_c0_g1_i5,blat.proc3829893.chain_3332,blat.proc3829893.chain_3334,blat.proc3829893.chain_3335	9
scaffold_14	retained_intron	15469859	15470058	+	asmbl_12588	none	STRG.17772.2	1	STRG.17772.1	1
scaffold_19	alternate_exon	4865464	4866797	+	asmbl_22144	none	STRG.22053.3,blat.proc3829881.chain_2973	2	STRG.22053.2	1
scaffold_19	alternate_exon	2780621	2780686	+	asmbl_22081,asmbl_22082	none	STRG.21950.4,STRG.21950.5	2	STRG.21950.1,STRG.21950.2,STRG.21950.3,blat.proc3829881.chain_2913	4
scaffold_9	skipped_exon	11793088	11794485	-	asmbl_55265,asmbl_55269	none	STRG.11484.2,STRG.11484.3,blat.proc3829891.chain_3591	3	STRG.11484.1,blat.proc3829891.chain_3590,blat.proc3829891.chain_3592,blat.proc3829891.chain_3594	4
scaffold_12	retained_intron	4983043	4983368	+	asmbl_8585	none	STRG.14656.2,Trinity_GG_8053_c0_g1_i3,blat.proc3829877.chain_3087,blat.proc3829877.chain_3088	4	blat.proc3829877.chain_3084	1
scaffold_23	spliced_intron	4315991	4316097	+	asmbl_30798,asmbl_30800	none	STRG.25826.1,blat.proc3829883.chain_2710,blat.proc3829883.chain_2716	3	blat.proc3829883.chain_2718	1
scaffold_15	alternate_exon	1963609	1963728	+	asmbl_13984	none	blat.proc3829879.chain_2659	1	STRG.17971.1,STRG.17971.2	2
scaffold_20	retained_intron	2079205	2079301	-	asmbl_26558	none	blat.proc3829897.chain_3694	1	STRG.22932.1,Trinity_GG_29800_c0_g1_i3,blat.proc3829897.chain_3695,blat.proc3829897.chain_3696	4
scaffold_18	retained_exon	3918127	3918460	-	asmbl_19823	none	STRG.21192.3	1	STRG.21192.2	1
scaffold_13	skipped_exon	16150173	16152408	-	asmbl_10240	none	STRG.16644.3	1	STRG.16644.2	1
scaffold_7	ends_in_intron	12370319	12370319	+	asmbl_51127	none	blat.proc3829875.chain_1805	1	STRG.9325.1,blat.proc3829875.chain_1799,blat.proc3829875.chain_1800,blat.proc3829875.chain_1804	4
scaffold_6	alt_acceptor	712285	712286	+	asmbl_46625	none	STRG.7122.1	1	STRG.7122.2	1
scaffold_4	alternate_exon	5033934	5034615	-	asmbl_41291	none	Trinity_GG_19486_c0_g2_i1,blat.proc3829889.chain_531	2	STRG.4398.2	1
scaffold_21	spliced_intron	6448011	6448185	+	asmbl_28664	none	STRG.24149.1,Trinity_GG_13331_c0_g1_i2,blat.proc3829883.chain_1213	3	Trinity_GG_13331_c0_g1_i1,blat.proc3829883.chain_1214	2
scaffold_12	spliced_intron	14184773	14185070	-	asmbl_8123,asmbl_8124	none	STRG.15242.1,STRG.15242.2,blat.proc3829893.chain_3686	3	blat.proc3829893.chain_3687	1
scaffold_3026	alt_donor	362	363	+	asmbl_40861	none	STRG.30791.3	1	STRG.30791.1	1
scaffold_2	ends_in_intron	1762054	1762054	-	asmbl_22893	none	Trinity_GG_17882_c1_g2_i1,blat.proc3829887.chain_1447	2	STRG.1649.1,blat.proc3829887.chain_1446	2
scaffold_22	spliced_intron	4404848	4404976	-	asmbl_30019	none	blat.proc3829899.chain_1994	1	STRG.24843.1,blat.proc3829899.chain_1992	2
scaffold_13	alternate_exon	6048623	6050959	-	asmbl_9729	none	blat.proc3829895.chain_628	1	STRG.15900.3,Trinity_GG_25933_c1_g1_i1,blat.proc3829895.chain_627,blat.proc3829895.chain_633	4
scaffold_4	alt_donor	14681957	14681958	-	asmbl_41826,asmbl_41827	none	STRG.5103.2,STRG.5103.3	2	STRG.5103.1	1
scaffold_16	spliced_intron	7540673	7540805	-	asmbl_16361	none	STRG.19400.1,blat.proc3829897.chain_434	2	blat.proc3829897.chain_435	1
scaffold_22	alternate_exon	4879424	4883289	-	asmbl_30046,asmbl_30047	none	STRG.24898.2,STRG.24898.3,blat.proc3829899.chain_1915,blat.proc3829899.chain_1917	4	STRG.24898.1,blat.proc3829899.chain_1916	2
scaffold_14	ends_in_intron	584112	584112	+	asmbl_11741,asmbl_11742,asmbl_11746	none	STRG.16728.1,STRG.16728.2,Trinity_GG_9217_c0_g1_i3,Trinity_GG_9217_c0_g1_i7,blat.proc3829879.chain_1457,blat.proc3829879.chain_1458	6	STRG.16728.3	1
scaffold_10	starts_in_intron	17632129	17632129	+	asmbl_5059	none	Trinity_GG_7244_c0_g1_i2,blat.proc3829877.chain_1684	2	STRG.13197.1	1
scaffold_1	starts_in_intron	14547024	14547024	-	asmbl_944	none	blat.proc3829887.chain_973	1	STRG.1053.1,blat.proc3829887.chain_972	2
scaffold_13	alt_acceptor	778	779	+	asmbl_10414	none	STRG.15404.2	1	STRG.15404.1,blat.proc3829879.chain_69	2
scaffold_13	skipped_exon	6396106	6396589	+	asmbl_10909,asmbl_10916	none	STRG.15914.1,STRG.15914.5,Trinity_GG_8718_c0_g1_i1,blat.proc3829879.chain_557	4	STRG.15914.3,STRG.15914.4,Trinity_GG_8718_c0_g1_i8,Trinity_GG_8718_c0_g1_i9,blat.proc3829879.chain_552,blat.proc3829879.chain_556	6
scaffold_13	alt_acceptor	738999	739000	+	asmbl_10485	none	STRG.15446.3	1	STRG.15446.1,blat.proc3829879.chain_131	2
scaffold_11	ends_in_intron	17365220	17365220	-	asmbl_7243	none	blat.proc3829893.chain_2764	1	STRG.14385.1,blat.proc3829893.chain_2765	2
scaffold_7	alt_donor	8281908	8281909	+	asmbl_50864,asmbl_50866	none	STRG.9053.1,blat.proc3829875.chain_1511,blat.proc3829875.chain_1513	3	blat.proc3829875.chain_1512	1
scaffold_25	spliced_intron	5776337	5776529	+	asmbl_33581	none	STRG.27456.2	1	STRG.27456.1,blat.proc3829885.chain_510	2
scaffold_25	starts_in_intron	6039639	6039639	-	asmbl_34281,asmbl_34282	none	STRG.27467.1,blat.proc3829901.chain_790,blat.proc3829901.chain_791	3	STRG.27467.2	1
scaffold_1	retained_intron	12334369	12335043	-	asmbl_718,asmbl_721	none	blat.proc3829887.chain_737,blat.proc3829887.chain_746	2	blat.proc3829887.chain_735,blat.proc3829887.chain_736	2
scaffold_13	alt_donor	10433211	10433212	+	asmbl_11223	none	STRG.16236.3,blat.proc3829879.chain_971	2	STRG.16236.1,STRG.16236.2,STRG.16236.4,blat.proc3829879.chain_969,blat.proc3829879.chain_970	5
scaffold_11	retained_intron	9830658	9831678	+	asmbl_5866	none	STRG.13996.1,Trinity_GG_7729_c0_g1_i9,Trinity_GG_7729_c1_g1_i1,blat.proc3829877.chain_2513,blat.proc3829877.chain_2515	5	STRG.13996.3,STRG.13996.4,blat.proc3829877.chain_2514	3
scaffold_11	alternate_exon	577347	579502	+	asmbl_5251	none	STRG.13259.1	1	STRG.13259.2	1
scaffold_17	spliced_intron	9453670	9453880	+	asmbl_18207,asmbl_18213	none	STRG.20557.3,STRG.20557.4,Trinity_GG_11275_c0_g1_i7,blat.proc3829881.chain_1395	4	STRG.20557.2,Trinity_GG_11275_c0_g1_i3,blat.proc3829881.chain_1393	3
scaffold_17	starts_in_intron	11050392	11050392	+	asmbl_18324	none	Trinity_GG_11327_c0_g1_i6,blat.proc3829881.chain_1493	2	STRG.20651.1,STRG.20651.2,blat.proc3829881.chain_1494,blat.proc3829881.chain_1495	4
scaffold_5	spliced_intron	7707898	7707967	+	asmbl_44162,asmbl_44165	none	STRG.6139.1,STRG.6139.2,blat.proc3829873.chain_2297	3	blat.proc3829873.chain_2298	1
scaffold_17	spliced_intron	10097780	10097808	+	asmbl_18301	none	STRG.20617.1	1	Trinity_GG_11295_c0_g1_i1,Trinity_GG_11295_c0_g1_i2,blat.proc3829881.chain_1439	3
scaffold_18	alt_donor	3798260	3798261	-	asmbl_19811,asmbl_19812	none	STRG.21185.1,blat.proc3829897.chain_2077,blat.proc3829897.chain_2078	3	STRG.21185.3,Trinity_GG_28883_c0_g1_i5,blat.proc3829897.chain_2080,blat.proc3829897.chain_2082,blat.proc3829897.chain_2083	5
scaffold_9	alt_acceptor	3632110	3632111	-	asmbl_54880	none	STRG.10960.1,blat.proc3829891.chain_3153	2	STRG.10960.2	1
scaffold_5	alternate_exon	9072693	9072892	+	asmbl_44256	none	STRG.6235.2,blat.proc3829873.chain_2399	2	STRG.6235.1,blat.proc3829873.chain_2398	2
scaffold_7	spliced_intron	1235502	1235757	+	asmbl_50470,asmbl_50474,asmbl_50479,asmbl_50485	none	STRG.8627.2,STRG.8627.8,Trinity_GG_4740_c0_g1_i16,blat.proc3829875.chain_1042,blat.proc3829875.chain_1043,blat.proc3829875.chain_1049	6	STRG.8627.6,Trinity_GG_4740_c0_g1_i13,Trinity_GG_4740_c0_g1_i14,blat.proc3829875.chain_1044,blat.proc3829875.chain_1045,blat.proc3829875.chain_1048	6
scaffold_4	starts_in_intron	4369761	4369761	+	asmbl_42567	none	Trinity_GG_2415_c0_g1_i4,blat.proc3829873.chain_722	2	STRG.4336.1,blat.proc3829873.chain_723,blat.proc3829873.chain_724,blat.proc3829873.chain_725	4
scaffold_15	retained_intron	15413654	15413826	+	asmbl_14729,asmbl_14730,asmbl_14733,asmbl_14734,asmbl_14735,asmbl_14736	none	STRG.18922.3,STRG.18922.4,STRG.18922.5,blat.proc3829879.chain_3551,blat.proc3829879.chain_3552,blat.proc3829879.chain_3553,blat.proc3829879.chain_3556,blat.proc3829879.chain_3557	8	STRG.18922.6,blat.proc3829879.chain_3550	2
scaffold_26	spliced_intron	9844185	9844437	+	asmbl_35806,asmbl_35812,asmbl_35816	none	STRG.28526.2,blat.proc3829885.chain_1556,blat.proc3829885.chain_1564	3	STRG.28526.1,STRG.28526.3,STRG.28526.5,blat.proc3829885.chain_1557,blat.proc3829885.chain_1558,blat.proc3829885.chain_1559,blat.proc3829885.chain_1560,blat.proc3829885.chain_1561,blat.proc3829885.chain_1562,blat.proc3829885.chain_1563,blat.proc3829885.chain_1565,blat.proc3829885.chain_1566,blat.proc3829885.chain_1567	13
scaffold_3	ends_in_intron	1532178	1532178	-	asmbl_38673	none	Trinity_GG_18613_c1_g1_i1,blat.proc3829887.chain_2720	2	STRG.2976.1,blat.proc3829887.chain_2721	2
scaffold_26	retained_intron	9775764	9775968	+	asmbl_35778,asmbl_35779,asmbl_35781,asmbl_35786,asmbl_35788	none	STRG.28501.1,STRG.28501.10,STRG.28501.3,STRG.28501.6,STRG.28501.9,Trinity_GG_15770_c0_g1_i1,blat.proc3829885.chain_1533,blat.proc3829885.chain_1538	8	STRG.28501.5,blat.proc3829885.chain_1532,blat.proc3829885.chain_1535	3
scaffold_23	ends_in_intron	10402821	10402821	+	asmbl_31150	none	blat.proc3829883.chain_3161	1	STRG.26227.1,STRG.26227.2,blat.proc3829883.chain_3160	3
scaffold_13	alternate_exon	8215287	8215334	-	asmbl_9915	none	STRG.16099.1	1	STRG.16099.2,blat.proc3829895.chain_887	2
scaffold_11	starts_in_intron	10183725	10183725	+	asmbl_5892	none	blat.proc3829877.chain_2497	1	STRG.14019.1,STRG.14019.2,STRG.14019.3,blat.proc3829877.chain_2496,blat.proc3829877.chain_2498	5
scaffold_9	retained_intron	14818996	14819580	-	asmbl_55464	none	blat.proc3829893.chain_5	1	STRG.11693.2,STRG.11693.7,blat.proc3829893.chain_8	3
scaffold_19	starts_in_intron	12522882	12522882	-	asmbl_21724	none	Trinity_GG_29543_c1_g1_i3,blat.proc3829897.chain_3221	2	STRG.22563.1	1
scaffold_18	retained_intron	1893653	1894712	-	asmbl_19688,asmbl_19689,asmbl_19691,asmbl_19692,asmbl_19693,asmbl_19694	none	STRG.21072.1,STRG.21072.10,STRG.21072.3,STRG.21072.5,STRG.21072.7,STRG.21072.8,STRG.21072.9,blat.proc3829897.chain_1896	8	blat.proc3829897.chain_1890,blat.proc3829897.chain_1891,blat.proc3829897.chain_1893,blat.proc3829897.chain_1895,blat.proc3829897.chain_1897,blat.proc3829897.chain_1898,blat.proc3829897.chain_1899,blat.proc3829897.chain_1901,blat.proc3829897.chain_1902	9
scaffold_20	ends_in_intron	7210912	7210912	+	asmbl_25863	none	Trinity_GG_12855_c0_g1_i3,blat.proc3829883.chain_403	2	STRG.23279.1,STRG.23279.2,STRG.23279.3,Trinity_GG_12855_c0_g1_i1,blat.proc3829883.chain_404,blat.proc3829883.chain_405	6
scaffold_11	starts_in_intron	8042725	8042725	-	asmbl_6797	none	blat.proc3829893.chain_2266	1	STRG.13798.1,STRG.13798.2,blat.proc3829893.chain_2265	3
scaffold_15	retained_intron	15409801	15409903	+	asmbl_14720,asmbl_14724,asmbl_14726	none	STRG.18921.4,STRG.18921.6,blat.proc3829879.chain_3516	3	STRG.18921.2,STRG.18921.3,blat.proc3829879.chain_3515,blat.proc3829879.chain_3517	4
scaffold_17	retained_intron	5138001	5138143	-	asmbl_18963,asmbl_18964	none	STRG.20232.4,blat.proc3829897.chain_1208	2	STRG.20232.1,blat.proc3829897.chain_1207	2
scaffold_22	alternate_exon	1006301	1006835	+	asmbl_29206	none	STRG.24742.3,Trinity_GG_13691_c0_g1_i10,blat.proc3829883.chain_1812	3	STRG.24742.1,Trinity_GG_13691_c0_g1_i6,blat.proc3829883.chain_1811	3
scaffold_11	starts_in_intron	8139567	8139567	-	asmbl_6825	none	Trinity_GG_24717_c3_g1_i1,blat.proc3829893.chain_2224	2	Trinity_GG_24717_c2_g1_i1,blat.proc3829893.chain_2223	2
scaffold_28	starts_in_intron	7234594	7234594	+	asmbl_38338	none	Trinity_GG_16492_c1_g1_i1,blat.proc3829885.chain_2859	2	STRG.29763.1,blat.proc3829885.chain_2856,blat.proc3829885.chain_2858	3
scaffold_14	alternate_exon	6772942	6773024	-	asmbl_13143,asmbl_13144	none	STRG.17107.2,blat.proc3829895.chain_1745	2	STRG.17107.1,blat.proc3829895.chain_1744,blat.proc3829895.chain_1746	3
scaffold_1	retained_exon	19042734	19043376	+	asmbl_2564	none	STRG.1337.3	1	STRG.1337.2,blat.proc3829871.chain_1392	2
scaffold_14	retained_intron	7216942	7217143	+	asmbl_12113	none	Trinity_GG_9432_c0_g1_i2,blat.proc3829879.chain_1871	2	STRG.17138.1,Trinity_GG_9432_c0_g1_i1,blat.proc3829879.chain_1870,blat.proc3829879.chain_1872	4
scaffold_20	spliced_intron	5927643	5928282	-	asmbl_26715	none	STRG.23186.1,blat.proc3829899.chain_131	2	STRG.23186.2,Trinity_GG_29904_c0_g1_i4,blat.proc3829899.chain_132,blat.proc3829899.chain_133	4
scaffold_2	alternate_exon	798691	801490	+	asmbl_24128	none	STRG.1558.1	1	STRG.1558.2	1
scaffold_11	starts_in_intron	8050258	8050258	+	asmbl_5676	none	STRG.13800.2,Trinity_GG_7571_c0_g1_i1,blat.proc3829877.chain_2229	3	STRG.13800.1,Trinity_GG_7571_c0_g2_i2,blat.proc3829877.chain_2230	3
scaffold_27	retained_intron	6782467	6782627	-	asmbl_37035	none	Trinity_GG_33279_c0_g1_i1,blat.proc3829901.chain_2192	2	STRG.29027.3,blat.proc3829901.chain_2193	2
scaffold_25	spliced_intron	6066560	6066726	-	asmbl_34287,asmbl_34291,asmbl_34292,asmbl_34293,asmbl_34294	none	STRG.27475.1,blat.proc3829901.chain_716,blat.proc3829901.chain_718,blat.proc3829901.chain_719,blat.proc3829901.chain_721,blat.proc3829901.chain_722	6	blat.proc3829901.chain_717	1
scaffold_10	ends_in_intron	4051311	4051311	+	asmbl_4385	none	Trinity_GG_6793_c0_g1_i1,blat.proc3829877.chain_909	2	STRG.12236.1,STRG.12236.2,Trinity_GG_6793_c0_g1_i2,blat.proc3829877.chain_908	4
scaffold_10	alternate_exon	7259521	7259568	-	asmbl_3454	none	STRG.12525.1,blat.proc3829893.chain_1014	2	STRG.12525.2	1
scaffold_7	alternate_exon	1447349	1447618	-	asmbl_49549	none	STRG.8632.2	1	Trinity_GG_21961_c4_g1_i1,blat.proc3829891.chain_1038	2
scaffold_18	retained_intron	8865903	8866098	-	asmbl_20060	none	STRG.21541.1,Trinity_GG_29045_c1_g1_i1,blat.proc3829897.chain_2364	3	STRG.21541.3,blat.proc3829897.chain_2356,blat.proc3829897.chain_2357,blat.proc3829897.chain_2359	4
scaffold_5	alt_donor	14042289	14042290	-	asmbl_45966	none	STRG.6610.2,blat.proc3829889.chain_2663	2	STRG.6610.1,blat.proc3829889.chain_2662	2
scaffold_26	alt_donor	4818400	4818401	+	asmbl_35453,asmbl_35455	none	STRG.28182.1,blat.proc3829885.chain_1145,blat.proc3829885.chain_1147	3	blat.proc3829885.chain_1144	1
scaffold_17	alt_donor	9994463	9994464	+	asmbl_18274	none	blat.proc3829881.chain_1436	1	STRG.20601.1,STRG.20601.2,blat.proc3829881.chain_1435	3
scaffold_4	starts_in_intron	5231401	5231401	-	asmbl_41311,asmbl_41313	none	blat.proc3829889.chain_438,blat.proc3829889.chain_440	2	STRG.4417.1,blat.proc3829889.chain_439	2
scaffold_17	retained_intron	14110311	14110420	-	asmbl_19456,asmbl_19457	none	blat.proc3829897.chain_1689,blat.proc3829897.chain_1691	2	STRG.20887.1,blat.proc3829897.chain_1688,blat.proc3829897.chain_1690	3
scaffold_3	alt_acceptor	7958145	7958146	-	asmbl_38957,asmbl_38958	none	STRG.3388.2,blat.proc3829887.chain_3108,blat.proc3829887.chain_3111	3	STRG.3388.1,blat.proc3829887.chain_3109,blat.proc3829887.chain_3112	3
scaffold_10	ends_in_intron	11970244	11970244	+	asmbl_4789	none	blat.proc3829877.chain_1320	1	STRG.12831.1,STRG.12831.3,blat.proc3829877.chain_1313,blat.proc3829877.chain_1317,blat.proc3829877.chain_1319,blat.proc3829877.chain_1321,blat.proc3829877.chain_1322	7
scaffold_19	alt_acceptor	13143421	13143422	+	asmbl_22663	none	STRG.22622.2,Trinity_GG_12507_c0_g1_i1,blat.proc3829881.chain_3573	3	STRG.22622.1,blat.proc3829881.chain_3571	2
scaffold_11	alternate_exon	1950869	1951838	+	asmbl_5305	none	STRG.13339.1,blat.proc3829877.chain_1828	2	blat.proc3829877.chain_1829	1
scaffold_13	retained_intron	7935012	7935207	-	asmbl_9876,asmbl_9877	none	STRG.16055.3,blat.proc3829895.chain_799,blat.proc3829895.chain_803	3	STRG.16055.1,STRG.16055.2,blat.proc3829895.chain_798,blat.proc3829895.chain_800	4
scaffold_2	alt_acceptor	17722136	17722137	+	asmbl_25231	none	blat.proc3829871.chain_2871	1	blat.proc3829871.chain_2872	1
scaffold_14	skipped_exon	869132	871148	+	asmbl_11751	none	STRG.16747.3	1	STRG.16747.1,STRG.16747.2,blat.proc3829879.chain_1427	3
scaffold_14	alt_donor	151715	151716	-	asmbl_12764	none	STRG.16700.4	1	STRG.16700.2,STRG.16700.3,Trinity_GG_26353_c0_g1_i4,blat.proc3829895.chain_1384,blat.proc3829895.chain_1385,blat.proc3829895.chain_1386	6
scaffold_22	alternate_exon	10668070	10669801	-	asmbl_30384	none	STRG.25390.1	1	STRG.25390.2,blat.proc3829899.chain_2498	2
scaffold_18	ends_in_intron	842239	842239	-	asmbl_19634	none	Trinity_GG_28798_c0_g1_i7,blat.proc3829897.chain_1927	2	blat.proc3829897.chain_1924,blat.proc3829897.chain_1925,blat.proc3829897.chain_1926	3
scaffold_17	alternate_exon	12384936	12387891	-	asmbl_19376	none	STRG.20776.3	1	STRG.20776.5,Trinity_GG_28651_c4_g1_i1,blat.proc3829897.chain_1640,blat.proc3829897.chain_1644	4
scaffold_9	alternate_exon	14818384	14818545	-	asmbl_55467	none	STRG.11693.6	1	STRG.11693.1,STRG.11693.2,blat.proc3829893.chain_10,blat.proc3829893.chain_8	4
scaffold_14	spliced_intron	6644100	6644388	-	asmbl_13124,asmbl_13125,asmbl_13126	none	STRG.17095.1,STRG.17095.2,STRG.17095.3	3	blat.proc3829895.chain_1784	1
scaffold_3	alt_acceptor	11270141	11270142	+	asmbl_40288	none	STRG.3548.1,Trinity_GG_2012_c0_g1_i2,blat.proc3829871.chain_3732	3	STRG.3548.2,Trinity_GG_2012_c0_g1_i3,blat.proc3829871.chain_3731	3
scaffold_2	starts_in_intron	7937652	7937652	+	asmbl_24639	none	Trinity_GG_1149_c0_g1_i3,blat.proc3829871.chain_2103	2	STRG.2090.1,Trinity_GG_1149_c0_g1_i1,Trinity_GG_1149_c0_g1_i4,Trinity_GG_1149_c0_g1_i5,blat.proc3829871.chain_2100,blat.proc3829871.chain_2101,blat.proc3829871.chain_2104	7
scaffold_12	alt_acceptor	16247318	16247319	+	asmbl_9119,asmbl_9121	none	STRG.15363.1,Trinity_GG_8439_c0_g1_i2,blat.proc3829879.chain_17	3	STRG.15363.2,Trinity_GG_8439_c0_g1_i3,blat.proc3829879.chain_15	3
scaffold_26	alt_donor	2789061	2789062	+	asmbl_35287	none	STRG.27956.1,Trinity_GG_15422_c0_g1_i1,blat.proc3829885.chain_933	3	Trinity_GG_15422_c0_g1_i3,blat.proc3829885.chain_932	2
scaffold_1	skipped_exon	12462400	12463266	-	asmbl_727,asmbl_728	none	STRG.864.1,STRG.864.4	2	STRG.864.2,STRG.864.3	2
scaffold_26	alt_acceptor	3790215	3790216	+	asmbl_35364	none	STRG.28051.4	1	STRG.28051.1,STRG.28051.2	2
scaffold_6	skipped_exon	16887339	16888534	-	asmbl_49112	none	Trinity_GG_21814_c0_g1_i2,blat.proc3829891.chain_740	2	STRG.8402.2,Trinity_GG_21814_c0_g1_i5,blat.proc3829891.chain_738	3
scaffold_17	alternate_exon	11567924	11571950	+	asmbl_18362	none	STRG.20693.2,Trinity_GG_11310_c0_g1_i1,Trinity_GG_11317_c1_g1_i1	3	Trinity_GG_11317_c0_g1_i1,blat.proc3829881.chain_1479	2
scaffold_8	alt_acceptor	8882441	8882442	-	asmbl_52969	none	STRG.10131.1,blat.proc3829891.chain_2293	2	blat.proc3829891.chain_2294	1
scaffold_13	alt_acceptor	16190413	16190414	-	asmbl_10252	none	STRG.16653.1	1	STRG.16653.2	1
scaffold_5	alt_acceptor	14262733	14262734	+	asmbl_44586,asmbl_44588	none	STRG.6629.1,STRG.6629.2,blat.proc3829873.chain_2764,blat.proc3829873.chain_2767	4	STRG.6629.3,blat.proc3829873.chain_2762,blat.proc3829873.chain_2771	3
scaffold_321	alt_acceptor	2237	2238	-	asmbl_40908	none	Trinity_GG_33977_c0_g1_i2,blat.proc3829901.chain_3322	2	STRG.30251.1,Trinity_GG_33977_c0_g1_i3,blat.proc3829901.chain_3321	3
scaffold_28	starts_in_intron	9117341	9117341	-	asmbl_37821	none	blat.proc3829901.chain_3049	1	STRG.29941.1,STRG.29941.3,blat.proc3829901.chain_3048,blat.proc3829901.chain_3050	4
scaffold_10	alternate_exon	3929710	3931532	-	asmbl_3153	none	STRG.12230.1,blat.proc3829893.chain_694	2	STRG.12230.3,STRG.12230.4,STRG.12230.5,blat.proc3829893.chain_691,blat.proc3829893.chain_695	5
scaffold_2	alt_acceptor	4241983	4241984	-	asmbl_23082	none	STRG.1859.3	1	STRG.1859.1,STRG.1859.2,blat.proc3829887.chain_1733,blat.proc3829887.chain_1734	4
scaffold_16	alt_donor	3706054	3706055	+	asmbl_16937,asmbl_16939	none	STRG.19166.2,blat.proc3829881.chain_35	2	STRG.19166.1,blat.proc3829881.chain_34,blat.proc3829881.chain_36	3
scaffold_15	alternate_exon	15849292	15849630	+	asmbl_14776,asmbl_14777	none	STRG.18964.5,STRG.18964.6,Trinity_GG_10383_c0_g1_i3,Trinity_GG_10383_c0_g1_i7,blat.proc3829879.chain_3540,blat.proc3829879.chain_3542	6	STRG.18964.1,STRG.18964.2,STRG.18964.3,STRG.18964.4,blat.proc3829879.chain_3538,blat.proc3829879.chain_3539	6
scaffold_19	starts_in_intron	8806233	8806233	+	asmbl_22362	none	blat.proc3829881.chain_3245	1	STRG.22319.1,STRG.22319.2,STRG.22319.3,STRG.22319.4,blat.proc3829881.chain_3246	5
scaffold_18	alternate_exon	12935707	12935774	+	asmbl_21005	none	STRG.21731.3	1	STRG.21731.1,blat.proc3829897.chain_2535	2
scaffold_19	alternate_exon	1740934	1740953	-	asmbl_21250	none	STRG.21921.1	1	STRG.21921.2	1
scaffold_17	retained_intron	9004119	9004561	+	asmbl_18182,asmbl_18183	none	STRG.20513.2,blat.proc3829881.chain_1320	2	blat.proc3829881.chain_1322	1
scaffold_15	alt_donor	8039834	8039835	-	asmbl_15347	none	STRG.18369.3,Trinity_GG_27305_c0_g1_i2,Trinity_GG_27305_c0_g1_i3,blat.proc3829895.chain_3069,blat.proc3829895.chain_3070	5	STRG.18369.1,STRG.18369.4,blat.proc3829895.chain_3067	3
scaffold_1	spliced_intron	5962642	5962827	-	asmbl_310	none	blat.proc3829887.chain_270	1	blat.proc3829887.chain_272	1
scaffold_6	alternate_exon	16599184	16599417	-	asmbl_49080	none	STRG.8376.2	1	STRG.8376.1,STRG.8376.3,blat.proc3829891.chain_695,blat.proc3829891.chain_696	4
scaffold_1	alt_donor	14428465	14428466	-	asmbl_930	none	STRG.1042.1,blat.proc3829887.chain_964	2	STRG.1042.3,blat.proc3829887.chain_963	2
scaffold_2	spliced_intron	13754726	13754863	-	asmbl_23538,asmbl_23539	none	STRG.2371.1,blat.proc3829887.chain_2225,blat.proc3829887.chain_2227	3	blat.proc3829887.chain_2226	1
scaffold_28	alternate_exon	6492512	6492545	-	asmbl_37668	none	STRG.29728.2	1	STRG.29728.1,Trinity_GG_33635_c1_g1_i1,blat.proc3829901.chain_2779,blat.proc3829901.chain_2780	4
scaffold_9	alternate_exon	4831187	4831491	-	asmbl_54937	none	STRG.11048.1,blat.proc3829891.chain_3215	2	STRG.11048.2	1
scaffold_1	retained_intron	20741340	20741546	-	asmbl_1199,asmbl_1200	none	blat.proc3829887.chain_1308	1	STRG.1419.1,blat.proc3829887.chain_1307	2
scaffold_13	starts_in_intron	7504749	7504749	-	asmbl_9843,asmbl_9849	none	STRG.16034.4,blat.proc3829895.chain_812	2	STRG.16034.1,STRG.16034.2,STRG.16034.3,STRG.16034.5,Trinity_GG_26030_c0_g1_i4,Trinity_GG_26030_c0_g1_i9,blat.proc3829895.chain_813,blat.proc3829895.chain_819,blat.proc3829895.chain_820,blat.proc3829895.chain_822	10
scaffold_15	alt_donor	15443730	15443731	+	asmbl_14744	none	STRG.18933.1,blat.proc3829879.chain_3564	2	STRG.18933.2	1
scaffold_4	alt_donor	996978	996979	-	asmbl_41101	none	STRG.4159.2,Trinity_GG_19334_c0_g1_i1,blat.proc3829889.chain_271	3	STRG.4159.1,Trinity_GG_19334_c0_g1_i2,blat.proc3829889.chain_270	3
scaffold_7	ends_in_intron	17611814	17611814	+	asmbl_51369	none	Trinity_GG_5301_c0_g1_i2	1	STRG.9601.1,blat.proc3829875.chain_2006	2
scaffold_12	alternate_exon	14129668	14129741	+	asmbl_9019,asmbl_9020	none	STRG.15226.1,STRG.15226.2,blat.proc3829877.chain_3679	3	STRG.15226.3	1
scaffold_18	alt_donor	8913584	8913585	-	asmbl_20078	none	blat.proc3829897.chain_2394	1	STRG.21550.2	1
scaffold_2	starts_in_intron	2804373	2804373	-	asmbl_22945	none	blat.proc3829887.chain_1556	1	STRG.1714.1,blat.proc3829887.chain_1555	2
scaffold_21	alt_acceptor	6536222	6536223	+	asmbl_28683,asmbl_28684	none	STRG.24166.2,blat.proc3829883.chain_1321	2	STRG.24166.1,blat.proc3829883.chain_1322,blat.proc3829883.chain_1324	3
scaffold_8	spliced_intron	115861	115888	+	asmbl_51639	none	STRG.9702.1	1	STRG.9702.2	1
scaffold_3	alt_acceptor	7972769	7972770	+	asmbl_40147	none	STRG.3381.1,blat.proc3829871.chain_3494	2	STRG.3381.2	1
scaffold_2	retained_intron	885396	885480	+	asmbl_24143	none	blat.proc3829871.chain_1567	1	STRG.1563.2,STRG.1563.3,blat.proc3829871.chain_1566	3
scaffold_24	alt_acceptor	2186894	2186895	+	asmbl_32092	none	blat.proc3829883.chain_3311	1	STRG.26425.1	1
scaffold_12	alternate_exon	9754580	9757259	+	asmbl_8838	none	STRG.14933.1,blat.proc3829877.chain_3459	2	STRG.14933.2	1
scaffold_9	retained_intron	5757730	5758224	-	asmbl_54989	none	STRG.11135.4,Trinity_GG_23161_c0_g1_i3,Trinity_GG_23161_c0_g1_i4,Trinity_GG_23161_c0_g1_i5,blat.proc3829891.chain_3240,blat.proc3829891.chain_3241	6	STRG.11135.1,STRG.11135.3,blat.proc3829891.chain_3237	3
scaffold_5	alt_donor	911761	911762	-	asmbl_45181	none	STRG.5629.1	1	blat.proc3829889.chain_1719	1
scaffold_15	alt_acceptor	1696482	1696483	+	asmbl_13969	none	STRG.17962.1,blat.proc3829879.chain_2664	2	STRG.17962.2	1
scaffold_17	retained_exon	2357645	2358219	+	asmbl_17765,asmbl_17771	none	STRG.20017.1,blat.proc3829881.chain_852,blat.proc3829881.chain_853	3	STRG.20017.4,STRG.20017.6	2
scaffold_11	spliced_intron	15656260	15657450	-	asmbl_7176,asmbl_7177,asmbl_7179,asmbl_7181,asmbl_7182,asmbl_7183	none	STRG.14297.1,STRG.14297.2,blat.proc3829893.chain_2729,blat.proc3829893.chain_2730,blat.proc3829893.chain_2731,blat.proc3829893.chain_2732,blat.proc3829893.chain_2736,blat.proc3829893.chain_2737	8	Trinity_GG_25013_c1_g1_i1,blat.proc3829893.chain_2733,blat.proc3829893.chain_2738	3
scaffold_17	alternate_exon	2713429	2713496	+	asmbl_17819	none	STRG.20055.1	1	STRG.20055.2	1
scaffold_18	retained_intron	8436469	8436543	-	asmbl_20047,asmbl_20048	none	STRG.21514.2,STRG.21514.3,blat.proc3829897.chain_2281	3	STRG.21514.1,Trinity_GG_29005_c0_g1_i2,blat.proc3829897.chain_2280	3
scaffold_10	retained_intron	5006392	5006680	-	asmbl_3245,asmbl_3246	none	Trinity_GG_23874_c0_g1_i2,Trinity_GG_23874_c0_g2_i1,blat.proc3829893.chain_753,blat.proc3829893.chain_755,blat.proc3829893.chain_757	5	STRG.12316.1,STRG.12316.2,blat.proc3829893.chain_756	3
scaffold_2	ends_in_intron	7878109	7878109	+	asmbl_24618,asmbl_24620,asmbl_24621	none	STRG.2087.1,Trinity_GG_1183_c0_g1_i14,Trinity_GG_1183_c0_g1_i18,blat.proc3829871.chain_2179,blat.proc3829871.chain_2180,blat.proc3829871.chain_2184	6	Trinity_GG_1183_c0_g1_i10,Trinity_GG_1183_c0_g1_i16,Trinity_GG_1183_c0_g1_i2,blat.proc3829871.chain_2181,blat.proc3829871.chain_2182,blat.proc3829871.chain_2185	6
scaffold_8	retained_intron	4899967	4900064	+	asmbl_51865	none	blat.proc3829875.chain_2366	1	STRG.9952.1,STRG.9952.2,blat.proc3829875.chain_2364,blat.proc3829875.chain_2365	4
scaffold_1	starts_in_intron	5963964	5963964	+	asmbl_1799	none	Trinity_GG_257_c0_g1_i3,blat.proc3829871.chain_457	2	STRG.396.1,STRG.396.2,blat.proc3829871.chain_454	3
scaffold_13	retained_intron	2338672	2339178	+	asmbl_10575,asmbl_10580,asmbl_10581,asmbl_10583,asmbl_10586	none	STRG.15543.11,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_157	5	STRG.15543.10,STRG.15543.3,STRG.15543.4,STRG.15543.6,STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161,blat.proc3829879.chain_162,blat.proc3829879.chain_164	11
scaffold_28	ends_in_intron	2724961	2724961	+	asmbl_38105	none	blat.proc3829885.chain_2565	1	STRG.29438.1,STRG.29438.2,blat.proc3829885.chain_2562,blat.proc3829885.chain_2563	4
scaffold_14	starts_in_intron	272772	272772	-	asmbl_12793	none	STRG.16706.1,blat.proc3829895.chain_1389	2	STRG.16706.2	1
scaffold_22	alt_acceptor	500647	500648	+	asmbl_29153,asmbl_29154	none	STRG.24682.1,STRG.24682.2,blat.proc3829883.chain_1656,blat.proc3829883.chain_1657	4	STRG.24682.3	1
scaffold_16	alternate_exon	6094643	6112340	-	asmbl_16309,asmbl_16311	none	STRG.19329.1,blat.proc3829897.chain_380,blat.proc3829897.chain_382	3	blat.proc3829897.chain_381	1
scaffold_18	retained_intron	7867463	7867646	+	asmbl_20827	none	STRG.21477.4,blat.proc3829881.chain_2467	2	STRG.21477.1,STRG.21477.2,STRG.21477.3,STRG.21477.6,Trinity_GG_11877_c0_g1_i12,Trinity_GG_11877_c0_g1_i14,Trinity_GG_11877_c0_g1_i6,Trinity_GG_11877_c0_g1_i7,blat.proc3829881.chain_2468,blat.proc3829881.chain_2469,blat.proc3829881.chain_2471,blat.proc3829881.chain_2473,blat.proc3829881.chain_2474,blat.proc3829881.chain_2475,blat.proc3829881.chain_2476	15
scaffold_9	spliced_intron	11777366	11777484	+	asmbl_54361,asmbl_54362	none	STRG.11478.1,STRG.11478.2	2	Trinity_GG_6374_c0_g1_i1,blat.proc3829877.chain_212	2
scaffold_11	alt_donor	4330931	4330932	-	asmbl_6574,asmbl_6575	none	STRG.13521.2,blat.proc3829893.chain_2001	2	STRG.13521.1,STRG.13521.3,blat.proc3829893.chain_1998	3
scaffold_6	retained_exon	14622605	14623228	-	asmbl_48951	none	STRG.8218.5,blat.proc3829891.chain_466	2	STRG.8218.4	1
scaffold_3	alt_acceptor	10305492	10305493	+	asmbl_40217	none	STRG.3466.3	1	STRG.3466.1,Trinity_GG_1968_c0_g2_i1,blat.proc3829871.chain_3656	3
scaffold_13	alternate_exon	5192199	5192225	-	asmbl_9640	none	STRG.15804.2	1	STRG.15804.1,blat.proc3829895.chain_542	2
scaffold_23	ends_in_intron	3247213	3247213	+	asmbl_30734	none	Trinity_GG_14204_c0_g1_i1	1	STRG.25740.1	1
scaffold_26	spliced_intron	8995725	8995801	+	asmbl_35716	none	STRG.28445.2,blat.proc3829885.chain_1477	2	STRG.28445.1	1
scaffold_4	alt_donor	4497560	4497561	-	asmbl_41254	none	STRG.4355.1,blat.proc3829889.chain_433	2	STRG.4355.2,blat.proc3829889.chain_434	2
scaffold_11	alt_donor	15668786	15668787	-	asmbl_7186	none	STRG.14296.2,blat.proc3829893.chain_2669	2	STRG.14296.1,blat.proc3829893.chain_2670	2
scaffold_15	starts_in_intron	11052282	11052282	-	asmbl_15491	none	blat.proc3829895.chain_3244	1	STRG.18571.1,blat.proc3829895.chain_3245,blat.proc3829895.chain_3246	3
scaffold_14	alternate_exon	15542217	15546417	+	asmbl_12600	none	STRG.17778.1,Trinity_GG_9729_c0_g1_i2,blat.proc3829879.chain_2370	3	Trinity_GG_9729_c0_g3_i1,blat.proc3829879.chain_2371	2
scaffold_27	ends_in_intron	3019453	3019453	+	asmbl_36126	none	blat.proc3829885.chain_1787	1	STRG.28769.1,STRG.28769.2,blat.proc3829885.chain_1774,blat.proc3829885.chain_1780,blat.proc3829885.chain_1782	5
scaffold_8	skipped_exon	9868367	9869282	+	asmbl_52100,asmbl_52102,asmbl_52110	none	STRG.10225.4,STRG.10225.6,blat.proc3829875.chain_2696	3	STRG.10225.2,STRG.10225.5,blat.proc3829875.chain_2691,blat.proc3829875.chain_2692,blat.proc3829875.chain_2693,blat.proc3829875.chain_2694,blat.proc3829875.chain_2695,blat.proc3829875.chain_2697	8
scaffold_27	alt_acceptor	6241749	6241750	+	asmbl_36343	none	STRG.28991.1,Trinity_GG_16050_c0_g1_i2,blat.proc3829885.chain_2132	3	Trinity_GG_16050_c0_g1_i1,blat.proc3829885.chain_2131	2
scaffold_20	alt_donor	11380300	11380301	+	asmbl_26190,asmbl_26192	none	STRG.23634.1,STRG.23634.3,Trinity_GG_13050_c0_g1_i2,Trinity_GG_13050_c0_g1_i4,blat.proc3829883.chain_705,blat.proc3829883.chain_707	6	STRG.23634.2,STRG.23634.4,STRG.23634.5,Trinity_GG_13050_c0_g1_i1,blat.proc3829883.chain_704	5
scaffold_2	starts_in_intron	4864388	4864388	-	asmbl_23134	none	blat.proc3829887.chain_1776	1	STRG.1908.1,blat.proc3829887.chain_1777,blat.proc3829887.chain_1778	3
scaffold_14	skipped_exon	151364	151904	-	asmbl_12758,asmbl_12759,asmbl_12762	none	STRG.16700.2,STRG.16700.3,Trinity_GG_26353_c0_g1_i4,blat.proc3829895.chain_1384,blat.proc3829895.chain_1385,blat.proc3829895.chain_1386	6	STRG.16700.5,blat.proc3829895.chain_1383	2
scaffold_10	ends_in_intron	3927766	3927766	-	asmbl_3160	none	STRG.12230.5	1	STRG.12230.1,STRG.12230.3,STRG.12230.4,blat.proc3829893.chain_690,blat.proc3829893.chain_691,blat.proc3829893.chain_693,blat.proc3829893.chain_694,blat.proc3829893.chain_695	8
scaffold_13	starts_in_intron	11378589	11378589	-	asmbl_10046	none	STRG.16287.6,blat.proc3829895.chain_1027	2	STRG.16287.5,STRG.16287.8,Trinity_GG_26140_c0_g1_i9,blat.proc3829895.chain_1029	4
scaffold_17	alt_donor	2765682	2765683	-	asmbl_18828	none	STRG.20063.1,blat.proc3829897.chain_1022	2	STRG.20063.2,blat.proc3829897.chain_1021	2
scaffold_15	alt_acceptor	3687382	3687383	-	asmbl_15121	none	blat.proc3829895.chain_2894	1	STRG.18132.2,STRG.18132.3,blat.proc3829895.chain_2892,blat.proc3829895.chain_2893	4
scaffold_22	starts_in_intron	8102780	8102780	-	asmbl_30217	none	blat.proc3829899.chain_2234	1	STRG.25149.1,blat.proc3829899.chain_2235	2
scaffold_24	alt_donor	1946665	1946666	-	asmbl_32745	none	STRG.26401.2	1	STRG.26401.1,STRG.26401.3,STRG.26401.4	3
scaffold_19	alt_donor	827940	827941	-	asmbl_21210	none	STRG.21862.1,STRG.21862.2,blat.proc3829897.chain_2632	3	STRG.21862.5,blat.proc3829897.chain_2631	2
scaffold_4	ends_in_intron	19607748	19607748	-	asmbl_42219	none	Trinity_GG_20124_c0_g2_i1,blat.proc3829889.chain_1626	2	STRG.5547.1,STRG.5547.2,STRG.5547.3,STRG.5547.4	4
scaffold_17	spliced_intron	3795219	3795317	+	asmbl_17864	none	STRG.20125.1,blat.proc3829881.chain_951	2	STRG.20125.2	1
scaffold_3	spliced_intron	7727603	7727817	+	asmbl_40134,asmbl_40137	none	STRG.3360.1,blat.proc3829871.chain_3540	2	blat.proc3829871.chain_3541	1
scaffold_6	retained_intron	9909894	9910383	+	asmbl_47187	none	STRG.7827.3,Trinity_GG_4257_c1_g1_i1,blat.proc3829875.chain_131	3	STRG.7827.1	1
scaffold_3	skipped_exon	6189043	6190087	-	asmbl_38866	none	STRG.3262.3,blat.proc3829887.chain_3014	2	blat.proc3829887.chain_3012	1
scaffold_10	alternate_exon	926603	926810	-	asmbl_2928	none	Trinity_GG_23671_c0_g1_i1,blat.proc3829893.chain_419	2	STRG.11959.2	1
scaffold_27	alternate_exon	9430296	9434124	-	asmbl_37093	none	STRG.29170.1,blat.proc3829901.chain_2276	2	STRG.29170.4,Trinity_GG_33337_c0_g1_i3,blat.proc3829901.chain_2274	3
scaffold_24	alt_donor	5883550	5883551	-	asmbl_32895,asmbl_32897,asmbl_32898	none	STRG.26634.1,STRG.26634.2,STRG.26634.4,blat.proc3829899.chain_3710,blat.proc3829899.chain_3712,blat.proc3829899.chain_3713	6	STRG.26634.3,STRG.26634.5,blat.proc3829899.chain_3711	3
scaffold_6	retained_exon	17647068	17647288	-	asmbl_49130	none	STRG.8448.1	1	STRG.8448.2	1
scaffold_13	retained_intron	2571207	2571311	+	asmbl_10607,asmbl_10608,asmbl_10610,asmbl_10611,asmbl_10613,asmbl_10614	none	Trinity_GG_8519_c0_g1_i3,Trinity_GG_8519_c0_g1_i8,blat.proc3829879.chain_188,blat.proc3829879.chain_189,blat.proc3829879.chain_190,blat.proc3829879.chain_193,blat.proc3829879.chain_194,blat.proc3829879.chain_195	8	STRG.15550.1,Trinity_GG_8519_c0_g1_i1,blat.proc3829879.chain_191,blat.proc3829879.chain_192	4
scaffold_19	retained_intron	11168790	11168935	+	asmbl_22475,asmbl_22477	none	blat.proc3829881.chain_3332,blat.proc3829881.chain_3335	2	STRG.22441.1,blat.proc3829881.chain_3333	2
scaffold_16	ends_in_intron	8086391	8086391	-	asmbl_16407	none	Trinity_GG_27908_c0_g3_i1,blat.proc3829897.chain_450	2	STRG.19441.1,blat.proc3829897.chain_444	2
scaffold_13	alt_donor	3355609	3355610	-	asmbl_9497	none	STRG.15631.2	1	STRG.15631.1,blat.proc3829895.chain_389,blat.proc3829895.chain_390	3
scaffold_18	starts_in_intron	11144332	11144332	+	asmbl_20957	none	Trinity_GG_11972_c0_g1_i1	1	STRG.21651.1,blat.proc3829881.chain_2619	2
scaffold_6	alt_acceptor	17884058	17884059	-	asmbl_49150	none	STRG.8474.4	1	STRG.8474.1,STRG.8474.3,Trinity_GG_21830_c0_g1_i2,blat.proc3829891.chain_767	4
scaffold_27	alt_donor	382156	382157	-	asmbl_36633	none	STRG.28547.1,Trinity_GG_32953_c1_g1_i2,blat.proc3829901.chain_1683,blat.proc3829901.chain_1687	4	STRG.28547.4,STRG.28547.5,blat.proc3829901.chain_1684,blat.proc3829901.chain_1685	4
scaffold_8	retained_exon	12728677	12728723	-	asmbl_53226	none	STRG.10443.1,blat.proc3829891.chain_2564	2	STRG.10443.2,blat.proc3829891.chain_2565	2
scaffold_5	alt_donor	9072893	9072894	+	asmbl_44256	none	STRG.6235.2,blat.proc3829873.chain_2399	2	STRG.6235.3,blat.proc3829873.chain_2400	2
scaffold_28	alternate_exon	5232621	5239911	-	asmbl_37588,asmbl_37589,asmbl_37593	none	STRG.29652.1,STRG.29652.2,blat.proc3829901.chain_2680,blat.proc3829901.chain_2685,blat.proc3829901.chain_2687	5	Trinity_GG_33579_c0_g1_i3,blat.proc3829901.chain_2686	2
scaffold_5	retained_intron	10253401	10253602	-	asmbl_45714,asmbl_45716	none	STRG.6319.2,blat.proc3829889.chain_2331,blat.proc3829889.chain_2333	3	STRG.6319.1,blat.proc3829889.chain_2330,blat.proc3829889.chain_2332	3
scaffold_10	spliced_intron	5856417	5856955	-	asmbl_3313,asmbl_3314,asmbl_3315	none	STRG.12401.1,STRG.12401.2,STRG.12401.3,blat.proc3829893.chain_872	4	blat.proc3829893.chain_870	1
scaffold_17	retained_intron	6684218	6684381	+	asmbl_17993	none	STRG.20309.2,blat.proc3829881.chain_1058	2	STRG.20309.1,blat.proc3829881.chain_1059	2
scaffold_1	ends_in_intron	14363969	14363969	-	asmbl_912	none	STRG.1033.4,blat.proc3829887.chain_883	2	STRG.1033.2,blat.proc3829887.chain_884	2
scaffold_13	spliced_intron	5575373	5575506	-	asmbl_9659	none	STRG.15843.3	1	STRG.15843.1,STRG.15843.2,blat.proc3829895.chain_584,blat.proc3829895.chain_586	4
scaffold_5	alt_acceptor	1082474	1082475	-	asmbl_45209	none	STRG.5654.1,Trinity_GG_20208_c0_g1_i3,blat.proc3829889.chain_1767	3	STRG.5654.2	1
scaffold_21	spliced_intron	2654346	2654855	-	asmbl_27509,asmbl_27511	none	STRG.23889.1,Trinity_GG_30293_c0_g1_i10,Trinity_GG_30293_c0_g1_i6,blat.proc3829899.chain_910,blat.proc3829899.chain_915	5	STRG.23889.2,STRG.23889.3,Trinity_GG_30293_c0_g1_i8,blat.proc3829899.chain_908,blat.proc3829899.chain_909,blat.proc3829899.chain_913,blat.proc3829899.chain_914	7
scaffold_14	alternate_exon	14387536	14387585	+	asmbl_12532	none	STRG.17683.2	1	STRG.17683.3,blat.proc3829879.chain_2303	2
scaffold_7	alternate_exon	17338363	17339246	-	asmbl_50245,asmbl_50246,asmbl_50247	none	STRG.9603.1,STRG.9603.2,STRG.9603.3	3	STRG.9603.4	1
scaffold_6	starts_in_intron	8581211	8581211	+	asmbl_47090,asmbl_47091	none	STRG.7732.4,blat.proc3829875.chain_110	2	STRG.7732.2,STRG.7732.3,blat.proc3829875.chain_111,blat.proc3829875.chain_112	4
scaffold_3	alternate_exon	9516758	9517587	+	asmbl_40188	none	blat.proc3829871.chain_3640	1	STRG.3434.1,Trinity_GG_1959_c0_g1_i1,blat.proc3829871.chain_3641	3
scaffold_28	alt_donor	4203752	4203753	+	asmbl_38219	none	STRG.29593.2	1	STRG.29593.1	1
scaffold_16	alt_donor	574007	574008	-	asmbl_16057	none	STRG.19026.2,blat.proc3829897.chain_79	2	STRG.19026.1	1
scaffold_1	spliced_intron	5739516	5739656	+	asmbl_1764,asmbl_1768,asmbl_1769,asmbl_1770	none	STRG.382.2,blat.proc3829871.chain_370,blat.proc3829871.chain_371,blat.proc3829871.chain_372,blat.proc3829871.chain_373	5	blat.proc3829871.chain_375	1
scaffold_2	starts_in_intron	1322240	1322240	+	asmbl_24206	none	Trinity_GG_928_c0_g1_i1,blat.proc3829871.chain_1712	2	STRG.1604.4,STRG.1604.5	2
scaffold_17	alternate_exon	5998745	5998987	+	asmbl_17964	none	STRG.20273.1,blat.proc3829881.chain_1089	2	STRG.20273.2,STRG.20273.4	2
scaffold_3	alt_donor	17843961	17843962	+	asmbl_40664,asmbl_40665,asmbl_40666	none	STRG.4008.1,STRG.4008.2,blat.proc3829873.chain_341,blat.proc3829873.chain_342,blat.proc3829873.chain_343	5	STRG.4008.3,STRG.4008.4	2
scaffold_3	retained_exon	3735950	3736073	+	asmbl_39928	none	STRG.3096.1,blat.proc3829871.chain_3246	2	STRG.3096.2,blat.proc3829871.chain_3245	2
scaffold_19	ends_in_intron	12973360	12973360	-	asmbl_21793	none	blat.proc3829897.chain_3319	1	STRG.22606.1,STRG.22606.2,STRG.22606.3,STRG.22606.4,STRG.22606.5,Trinity_GG_29578_c0_g1_i1,Trinity_GG_29578_c0_g1_i2,Trinity_GG_29578_c0_g1_i6,Trinity_GG_29578_c0_g1_i8,blat.proc3829897.chain_3318,blat.proc3829897.chain_3320,blat.proc3829897.chain_3324,blat.proc3829897.chain_3325	13
scaffold_15	retained_intron	15409791	15410182	+	asmbl_14720	none	blat.proc3829879.chain_3516	1	STRG.18921.10	1
scaffold_3	alt_acceptor	2952784	2952785	+	asmbl_39883	none	STRG.3052.2	1	STRG.3052.1	1
scaffold_5	ends_in_intron	10541035	10541035	+	asmbl_44349	none	Trinity_GG_3455_c0_g1_i1,blat.proc3829873.chain_2480	2	STRG.6333.1,STRG.6333.2,Trinity_GG_3455_c0_g1_i2,blat.proc3829873.chain_2481	4
scaffold_3	starts_in_intron	17105572	17105572	+	asmbl_40603	none	Trinity_GG_2160_c2_g1_i1,blat.proc3829873.chain_255	2	STRG.3948.1,Trinity_GG_2160_c0_g1_i1,Trinity_GG_2160_c0_g1_i2,blat.proc3829873.chain_252,blat.proc3829873.chain_253	5
scaffold_3	retained_exon	14514228	14514365	-	asmbl_39334	none	STRG.3790.1	1	STRG.3790.2	1
scaffold_8	alternate_exon	16504948	16506374	-	asmbl_53411,asmbl_53413,asmbl_53414,asmbl_53416	none	Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2863,blat.proc3829891.chain_2868,blat.proc3829891.chain_2870	8	Trinity_GG_22960_c0_g1_i9,blat.proc3829891.chain_2858	2
scaffold_2	spliced_intron	6083683	6083943	-	asmbl_23200	none	STRG.1980.2,blat.proc3829887.chain_1842	2	Trinity_GG_18112_c0_g1_i7,blat.proc3829887.chain_1838	2
scaffold_8	starts_in_intron	10059802	10059802	-	asmbl_53097	none	blat.proc3829891.chain_2382	1	STRG.10258.2,blat.proc3829891.chain_2381	2
scaffold_13	spliced_intron	2637243	2637508	+	asmbl_10615	none	STRG.15549.1,Trinity_GG_8560_c0_g1_i1,Trinity_GG_8560_c0_g1_i3,blat.proc3829879.chain_272	4	STRG.15549.2,Trinity_GG_8560_c0_g1_i4	2
scaffold_10	starts_in_intron	9500965	9500965	+	asmbl_4671	none	Trinity_GG_7001_c0_g1_i2,blat.proc3829877.chain_1257	2	STRG.12687.1,blat.proc3829877.chain_1259	2
scaffold_9	retained_exon	15221955	15222080	-	asmbl_55476,asmbl_55477	none	STRG.11719.2,STRG.11719.3,blat.proc3829893.chain_58	3	STRG.11719.1,blat.proc3829893.chain_59	2
scaffold_16	alternate_exon	15231651	15231847	+	asmbl_17528	none	STRG.19871.1	1	STRG.19871.2,Trinity_GG_10849_c1_g1_i1	2
scaffold_5	ends_in_intron	6564635	6564635	+	asmbl_44099	none	Trinity_GG_3293_c0_g1_i3	1	STRG.6047.1,STRG.6047.2,blat.proc3829873.chain_2179,blat.proc3829873.chain_2181	4
scaffold_2174	retained_intron	839	882	-	asmbl_29073	none	STRG.30694.1	1	STRG.30694.2	1
scaffold_21	alt_donor	6988500	6988501	-	asmbl_27794	none	STRG.24212.1,blat.proc3829899.chain_1233	2	STRG.24212.2,blat.proc3829899.chain_1235	2
scaffold_12	alt_acceptor	11111953	11111954	-	asmbl_7914	none	STRG.15046.2,Trinity_GG_25368_c0_g1_i2,blat.proc3829893.chain_3373	3	STRG.15046.1,blat.proc3829893.chain_3372	2
scaffold_19	alt_acceptor	614555	614556	+	asmbl_21994	none	STRG.21830.2	1	STRG.21830.1,Trinity_GG_12086_c0_g1_i1,blat.proc3829881.chain_2811	3
scaffold_13	retained_intron	8013982	8014196	+	asmbl_11076	none	Trinity_GG_8816_c0_g1_i1,blat.proc3829879.chain_760	2	STRG.16066.1,STRG.16066.2,blat.proc3829879.chain_761,blat.proc3829879.chain_762,blat.proc3829879.chain_765	5
scaffold_24	retained_intron	10778989	10779251	-	asmbl_33212	none	blat.proc3829901.chain_293	1	STRG.27021.1,blat.proc3829901.chain_292,blat.proc3829901.chain_294,blat.proc3829901.chain_296	4
scaffold_20	starts_in_intron	11477235	11477235	+	asmbl_26205	none	Trinity_GG_13061_c0_g1_i2,blat.proc3829883.chain_734	2	STRG.23638.1,Trinity_GG_13061_c0_g1_i1,blat.proc3829883.chain_735	3
scaffold_1	starts_in_intron	13928703	13928703	-	asmbl_868	none	blat.proc3829887.chain_920	1	STRG.998.1,STRG.998.2	2
scaffold_28	spliced_intron	5234854	5235055	-	asmbl_37588,asmbl_37589,asmbl_37592,asmbl_37593,asmbl_37594,asmbl_37595	none	STRG.29652.1,STRG.29652.2,blat.proc3829901.chain_2678,blat.proc3829901.chain_2680,blat.proc3829901.chain_2683,blat.proc3829901.chain_2684,blat.proc3829901.chain_2685,blat.proc3829901.chain_2687	8	Trinity_GG_33579_c0_g1_i7,blat.proc3829901.chain_2679	2
scaffold_22	spliced_intron	497867	498164	+	asmbl_29153	none	STRG.24682.1,blat.proc3829883.chain_1656	2	STRG.24682.2,blat.proc3829883.chain_1657	2
scaffold_7	alternate_exon	10551753	10551816	+	asmbl_51013	none	STRG.9220.1	1	STRG.9220.2,Trinity_GG_5068_c0_g1_i1,blat.proc3829875.chain_1593	3
scaffold_3	ends_in_intron	8335317	8335317	-	asmbl_38990	none	STRG.3405.2,Trinity_GG_18800_c0_g1_i1,blat.proc3829887.chain_3066	3	STRG.3405.1	1
scaffold_13	retained_intron	6434028	6434177	-	asmbl_9749	none	STRG.15922.2,blat.proc3829895.chain_716	2	STRG.15922.1,blat.proc3829895.chain_710,blat.proc3829895.chain_712,blat.proc3829895.chain_713,blat.proc3829895.chain_715	5
scaffold_26	alt_acceptor	9044193	9044194	+	asmbl_35724	none	STRG.28452.1,Trinity_GG_15751_c0_g1_i1,blat.proc3829885.chain_1495	3	STRG.28452.2	1
scaffold_17	retained_intron	14380546	14380566	+	asmbl_18518	none	STRG.20905.1	1	STRG.20905.2	1
scaffold_6	alt_donor	17847254	17847255	+	asmbl_47731	none	blat.proc3829875.chain_857	1	STRG.8466.1	1
scaffold_17	retained_exon	2681893	2682008	+	asmbl_17810,asmbl_17812	none	STRG.20051.1,blat.proc3829881.chain_883,blat.proc3829881.chain_884	3	STRG.20051.2,blat.proc3829881.chain_882	2
scaffold_2	retained_intron	888658	888818	+	asmbl_24146	none	STRG.1564.3,Trinity_GG_856_c0_g1_i3,blat.proc3829871.chain_1548	3	blat.proc3829871.chain_1546	1
scaffold_6	ends_in_intron	15762101	15762101	-	asmbl_49022	none	blat.proc3829891.chain_533	1	STRG.8311.1,STRG.8311.2	2
scaffold_5	spliced_intron	15539705	15539796	-	asmbl_46075	none	STRG.6735.1	1	STRG.6735.2	1
scaffold_1	spliced_intron	8759445	8759617	-	asmbl_494	none	blat.proc3829887.chain_511	1	STRG.583.2,STRG.583.4,STRG.583.5,blat.proc3829887.chain_507,blat.proc3829887.chain_509	5
scaffold_4	alternate_exon	6188551	6188630	-	asmbl_41401	none	STRG.4487.3,Trinity_GG_19491_c0_g1_i3,blat.proc3829889.chain_542	3	STRG.4487.1,Trinity_GG_19491_c0_g1_i1,blat.proc3829889.chain_541	3
scaffold_12	starts_in_intron	15132051	15132051	-	asmbl_8189	none	STRG.15302.1,blat.proc3829895.chain_1	2	STRG.15302.2,blat.proc3829895.chain_3	2
scaffold_7	spliced_intron	12448231	12449017	-	asmbl_50036,asmbl_50037,asmbl_50039,asmbl_50042,asmbl_50044	none	STRG.9342.1,STRG.9342.2,Trinity_GG_22282_c1_g1_i12,Trinity_GG_22282_c1_g1_i7,blat.proc3829891.chain_1607,blat.proc3829891.chain_1608,blat.proc3829891.chain_1610,blat.proc3829891.chain_1611	8	blat.proc3829891.chain_1604,blat.proc3829891.chain_1606	2
scaffold_5	ends_in_intron	1249493	1249493	-	asmbl_45238	none	Trinity_GG_20219_c0_g1_i5,blat.proc3829889.chain_1785	2	STRG.5683.1,Trinity_GG_20219_c0_g1_i6,blat.proc3829889.chain_1781,blat.proc3829889.chain_1782,blat.proc3829889.chain_1783,blat.proc3829889.chain_1784	6
scaffold_26	alternate_exon	5556701	5559348	+	asmbl_35546	none	STRG.28248.1	1	STRG.28248.4	1
scaffold_20	spliced_intron	7473793	7473882	-	asmbl_26825,asmbl_26827,asmbl_26828,asmbl_26829,asmbl_26830,asmbl_26831,asmbl_26832	none	STRG.23308.1,blat.proc3829899.chain_389,blat.proc3829899.chain_391,blat.proc3829899.chain_393,blat.proc3829899.chain_394,blat.proc3829899.chain_396,blat.proc3829899.chain_399,blat.proc3829899.chain_401	8	blat.proc3829899.chain_390	1
scaffold_5	starts_in_intron	414518	414518	-	asmbl_45166	none	blat.proc3829889.chain_1723	1	STRG.5604.1,blat.proc3829889.chain_1722	2
scaffold_20	retained_intron	8167955	8168079	+	asmbl_25906	none	blat.proc3829883.chain_426	1	STRG.23350.3	1
scaffold_5	starts_in_intron	13660580	13660580	-	asmbl_45923	none	blat.proc3829889.chain_2646	1	STRG.6576.1,STRG.6576.2,blat.proc3829889.chain_2644,blat.proc3829889.chain_2645,blat.proc3829889.chain_2647	5
scaffold_10	spliced_intron	5687438	5687977	+	asmbl_4471	none	STRG.12387.3,blat.proc3829877.chain_1043	2	STRG.12387.1,STRG.12387.2,blat.proc3829877.chain_1042	3
scaffold_13	starts_in_intron	9179773	9179773	-	asmbl_9967	none	blat.proc3829895.chain_930	1	STRG.16158.1,STRG.16158.2,blat.proc3829895.chain_927,blat.proc3829895.chain_928,blat.proc3829895.chain_929	5
scaffold_17	retained_intron	8540373	8540456	+	asmbl_18120,asmbl_18121	none	STRG.20458.1,STRG.20458.2,blat.proc3829881.chain_1287,blat.proc3829881.chain_1288	4	STRG.20458.3	1
scaffold_15	retained_intron	389143	389240	+	asmbl_13909,asmbl_13910,asmbl_13911	none	STRG.17879.1,STRG.17879.3,Trinity_GG_9836_c0_g1_i2,blat.proc3829879.chain_2569,blat.proc3829879.chain_2571,blat.proc3829879.chain_2572,blat.proc3829879.chain_2575	7	STRG.17879.2,blat.proc3829879.chain_2574	2
scaffold_8	alt_acceptor	4799709	4799710	-	asmbl_52790	none	STRG.9932.1,Trinity_GG_22560_c0_g1_i2,blat.proc3829891.chain_2101	3	STRG.9932.2	1
scaffold_24	retained_intron	1939606	1939723	-	asmbl_32740	none	STRG.26402.1,blat.proc3829899.chain_3415	2	STRG.26402.2,blat.proc3829899.chain_3416	2
scaffold_8	starts_in_intron	10485133	10485133	+	asmbl_52161	none	Trinity_GG_5714_c0_g1_i1,blat.proc3829875.chain_2787	2	STRG.10277.1,STRG.10277.2,blat.proc3829875.chain_2784,blat.proc3829875.chain_2785,blat.proc3829875.chain_2786	5
scaffold_17	alt_donor	1719085	1719086	-	asmbl_18772	none	STRG.19995.1,blat.proc3829897.chain_969	2	STRG.19995.2,blat.proc3829897.chain_968	2
scaffold_13	ends_in_intron	6608143	6608143	+	asmbl_10930,asmbl_10932	none	STRG.15936.1,blat.proc3829879.chain_613,blat.proc3829879.chain_615	3	STRG.15936.2,STRG.15936.4,blat.proc3829879.chain_614	3
scaffold_13	starts_in_intron	2650578	2650578	+	asmbl_10618	none	Trinity_GG_8561_c0_g1_i2,blat.proc3829879.chain_275	2	STRG.15565.1,blat.proc3829879.chain_276	2
scaffold_3	skipped_exon	10950130	10950978	-	asmbl_39080,asmbl_39083	none	STRG.3536.1,blat.proc3829887.chain_3312,blat.proc3829887.chain_3313	3	STRG.3536.2,blat.proc3829887.chain_3310,blat.proc3829887.chain_3311	3
scaffold_26	alternate_exon	4818229	4818340	+	asmbl_35454	none	blat.proc3829885.chain_1144	1	STRG.28182.2,blat.proc3829885.chain_1146	2
scaffold_14	alt_donor	583074	583075	+	asmbl_11742,asmbl_11745	none	STRG.16728.3,Trinity_GG_9217_c0_g1_i7,blat.proc3829879.chain_1458	3	STRG.16728.2	1
scaffold_1	spliced_intron	20347167	20348278	+	asmbl_2606,asmbl_2611	none	STRG.1398.5,Trinity_GG_815_c2_g1_i10,blat.proc3829871.chain_1448	3	STRG.1398.2,STRG.1398.3,STRG.1398.4,STRG.1398.6,Trinity_GG_815_c2_g1_i5,Trinity_GG_815_c2_g1_i6,blat.proc3829871.chain_1446,blat.proc3829871.chain_1450,blat.proc3829871.chain_1451,blat.proc3829871.chain_1452,blat.proc3829871.chain_1453,blat.proc3829871.chain_1454	12
scaffold_22	spliced_intron	1013399	1013787	-	asmbl_29904	none	STRG.24743.2,blat.proc3829899.chain_1858	2	Trinity_GG_30832_c0_g1_i3,blat.proc3829899.chain_1859	2
scaffold_16	alt_acceptor	10745586	10745587	+	asmbl_17355,asmbl_17356	none	STRG.19614.1,STRG.19614.2,Trinity_GG_10748_c0_g1_i1,Trinity_GG_10748_c0_g1_i2,blat.proc3829881.chain_489,blat.proc3829881.chain_490	6	STRG.19614.3	1
scaffold_11	alt_acceptor	8398327	8398328	+	asmbl_5726	none	STRG.13845.2,Trinity_GG_7638_c0_g1_i6,blat.proc3829877.chain_2341,blat.proc3829877.chain_2342	4	STRG.13845.1,blat.proc3829877.chain_2345	2
scaffold_18	retained_intron	8883548	8883630	-	asmbl_20069	none	STRG.21540.4,Trinity_GG_29008_c0_g1_i4,blat.proc3829897.chain_2286	3	STRG.21540.3,Trinity_GG_29008_c0_g1_i3,blat.proc3829897.chain_2285	3
scaffold_8	skipped_exon	11572603	11573251	+	asmbl_52225	none	STRG.10346.2,Trinity_GG_5770_c0_g1_i3,blat.proc3829875.chain_2875	3	STRG.10346.1,blat.proc3829875.chain_2874	2
scaffold_10	starts_in_intron	6077609	6077609	-	asmbl_3344,asmbl_3345,asmbl_3346,asmbl_3347	none	blat.proc3829893.chain_918,blat.proc3829893.chain_922,blat.proc3829893.chain_923,blat.proc3829893.chain_924	4	STRG.12437.1,blat.proc3829893.chain_919,blat.proc3829893.chain_921	3
scaffold_6	ends_in_intron	12999182	12999182	-	asmbl_48801,asmbl_48803	none	Trinity_GG_21547_c0_g1_i11,Trinity_GG_21547_c0_g1_i16,blat.proc3829891.chain_268,blat.proc3829891.chain_270	4	STRG.8061.1,STRG.8061.2,STRG.8061.3,STRG.8061.4,STRG.8061.5,Trinity_GG_21547_c0_g1_i10,blat.proc3829891.chain_259,blat.proc3829891.chain_260,blat.proc3829891.chain_262,blat.proc3829891.chain_263,blat.proc3829891.chain_264,blat.proc3829891.chain_271,blat.proc3829891.chain_272,blat.proc3829891.chain_273,blat.proc3829891.chain_275	15
scaffold_8	alt_acceptor	1127364	1127365	+	asmbl_51675	none	STRG.9742.1	1	STRG.9742.3	1
scaffold_12	spliced_intron	10384453	10384526	+	asmbl_8887	none	STRG.14999.1,blat.proc3829877.chain_3517	2	blat.proc3829877.chain_3516	1
scaffold_2	ends_in_intron	14546857	14546857	+	asmbl_24977	none	Trinity_GG_1360_c0_g1_i12	1	STRG.2454.1,STRG.2454.2	2
scaffold_24	retained_exon	4280562	4280609	+	asmbl_32190	none	STRG.26568.1,blat.proc3829883.chain_3466	2	STRG.26568.2,blat.proc3829883.chain_3465	2
scaffold_1	spliced_intron	12335617	12335989	-	asmbl_710,asmbl_711,asmbl_715,asmbl_716,asmbl_717,asmbl_718,asmbl_721,asmbl_722,asmbl_723	none	STRG.843.1,STRG.843.2,blat.proc3829887.chain_734,blat.proc3829887.chain_735,blat.proc3829887.chain_736,blat.proc3829887.chain_737,blat.proc3829887.chain_739,blat.proc3829887.chain_741,blat.proc3829887.chain_743,blat.proc3829887.chain_746	10	blat.proc3829887.chain_738,blat.proc3829887.chain_742,blat.proc3829887.chain_744,blat.proc3829887.chain_745	4
scaffold_3	skipped_exon	14530559	14532845	-	asmbl_39340	none	STRG.3791.1,blat.proc3829887.chain_3636	2	STRG.3791.2,blat.proc3829887.chain_3635	2
scaffold_26	alt_acceptor	5486533	5486534	+	asmbl_35526	none	STRG.28241.4,Trinity_GG_15567_c0_g1_i6,blat.proc3829885.chain_1184	3	STRG.28241.1,STRG.28241.2,Trinity_GG_15567_c0_g1_i5,Trinity_GG_15567_c0_g1_i7,Trinity_GG_15567_c0_g1_i8,blat.proc3829885.chain_1185,blat.proc3829885.chain_1187	7
scaffold_6	spliced_intron	3799951	3800050	+	asmbl_46802,asmbl_46803	none	STRG.7371.1,STRG.7371.2,blat.proc3829873.chain_3488,blat.proc3829873.chain_3489	4	blat.proc3829873.chain_3490	1
scaffold_5	alt_acceptor	4696592	4696593	+	asmbl_43948	none	blat.proc3829873.chain_2093	1	STRG.5917.2,STRG.5917.3,STRG.5917.4,blat.proc3829873.chain_2094	4
scaffold_18	retained_intron	8726003	8726193	+	asmbl_20881,asmbl_20882,asmbl_20885	none	STRG.21533.3,STRG.21533.5,STRG.21533.6,Trinity_GG_11882_c0_g1_i2,blat.proc3829881.chain_2486,blat.proc3829881.chain_2487,blat.proc3829881.chain_2488	7	STRG.21533.1,blat.proc3829881.chain_2482,blat.proc3829881.chain_2483	3
scaffold_26	alt_acceptor	6301389	6301390	-	asmbl_34940	none	STRG.28309.2,blat.proc3829901.chain_1481	2	STRG.28309.1,STRG.28309.3,blat.proc3829901.chain_1480	3
scaffold_19	spliced_intron	13001384	13001875	+	asmbl_22642	none	Trinity_GG_12498_c0_g1_i1,blat.proc3829881.chain_3555	2	Trinity_GG_12498_c0_g1_i2,blat.proc3829881.chain_3554	2
scaffold_5	alt_acceptor	13320090	13320091	-	asmbl_45920	none	STRG.6578.2	1	STRG.6578.1,blat.proc3829889.chain_2545,blat.proc3829889.chain_2546,blat.proc3829889.chain_2547	4
scaffold_26	alt_acceptor	3432909	3432910	+	asmbl_35309,asmbl_35310,asmbl_35312	none	STRG.28008.1,blat.proc3829885.chain_900,blat.proc3829885.chain_901,blat.proc3829885.chain_903	4	blat.proc3829885.chain_902	1
scaffold_7	starts_in_intron	13548287	13548287	+	asmbl_51242	none	Trinity_GG_5258_c0_g1_i2,blat.proc3829875.chain_1927	2	STRG.9465.1,blat.proc3829875.chain_1926,blat.proc3829875.chain_1928,blat.proc3829875.chain_1929	4
scaffold_23	alternate_exon	10977282	10979913	+	asmbl_31193	none	STRG.26281.2	1	STRG.26281.3,Trinity_GG_14524_c1_g1_i2,blat.proc3829883.chain_3198,blat.proc3829883.chain_3204	4
scaffold_25	spliced_intron	6324446	6324641	-	asmbl_34329,asmbl_34332,asmbl_34333,asmbl_34334	none	STRG.27499.1,STRG.27499.3,blat.proc3829901.chain_861,blat.proc3829901.chain_862,blat.proc3829901.chain_865	5	STRG.27499.2,Trinity_GG_32449_c0_g1_i7,blat.proc3829901.chain_863,blat.proc3829901.chain_864	4
scaffold_20	alternate_exon	6771192	6771317	+	asmbl_25836	none	STRG.23245.2	1	STRG.23245.1,blat.proc3829883.chain_366	2
scaffold_4	starts_in_intron	5652383	5652383	-	asmbl_41356,asmbl_41360,asmbl_41361,asmbl_41364	none	blat.proc3829889.chain_602,blat.proc3829889.chain_607,blat.proc3829889.chain_609,blat.proc3829889.chain_610	4	STRG.4469.1,STRG.4469.2,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_604,blat.proc3829889.chain_606,blat.proc3829889.chain_608,blat.proc3829889.chain_611,blat.proc3829889.chain_612	9
scaffold_6	starts_in_intron	3287508	3287508	-	asmbl_48184	none	STRG.7327.2	1	STRG.7327.1,STRG.7327.3	2
scaffold_3	alternate_exon	19882568	19883060	-	asmbl_39621	none	STRG.4100.3	1	STRG.4100.1,STRG.4100.2,STRG.4100.4,blat.proc3829889.chain_137	4
scaffold_3	retained_exon	12421536	12421583	+	asmbl_40353	none	STRG.3634.2,blat.proc3829873.chain_41	2	STRG.3634.1,blat.proc3829873.chain_43	2
scaffold_27	alternate_exon	382158	383179	-	asmbl_36633	none	STRG.28547.1,Trinity_GG_32953_c1_g1_i2,blat.proc3829901.chain_1683,blat.proc3829901.chain_1687	4	STRG.28547.2,blat.proc3829901.chain_1686	2
scaffold_340	alt_acceptor	2915	2916	+	asmbl_40964,asmbl_40966	none	STRG.30267.2,STRG.30267.3	2	STRG.30267.1,blat.proc3829885.chain_3313,blat.proc3829893.chain_1073	3
scaffold_23	skipped_exon	2728397	2729974	+	asmbl_30723	none	STRG.25724.2,blat.proc3829883.chain_2628	2	STRG.25724.1,blat.proc3829883.chain_2629	2
scaffold_20	alternate_exon	2646296	2646407	-	asmbl_26589	none	STRG.22997.2	1	STRG.22997.1	1
scaffold_23	retained_exon	7686484	7686587	+	asmbl_31007,asmbl_31013	none	STRG.26063.5,STRG.26063.7,Trinity_GG_14406_c0_g1_i4,blat.proc3829883.chain_2978	4	STRG.26063.1,STRG.26063.6,Trinity_GG_14406_c0_g1_i3,Trinity_GG_14406_c0_g1_i6,blat.proc3829883.chain_2977,blat.proc3829883.chain_2981	6
scaffold_1	retained_intron	8733191	8733283	-	asmbl_491	none	blat.proc3829887.chain_483	1	STRG.574.1,blat.proc3829887.chain_481,blat.proc3829887.chain_482,blat.proc3829887.chain_484	4
scaffold_22	starts_in_intron	4282196	4282196	-	asmbl_30006	none	blat.proc3829899.chain_1954	1	STRG.24837.1,STRG.24837.2,STRG.24837.3,blat.proc3829899.chain_1952,blat.proc3829899.chain_1955,blat.proc3829899.chain_1956	6
scaffold_6	starts_in_intron	8850867	8850867	-	asmbl_48523	none	STRG.7753.2,blat.proc3829889.chain_3729	2	STRG.7753.1,blat.proc3829889.chain_3731,blat.proc3829889.chain_3732	3
scaffold_16	starts_in_intron	14497745	14497745	-	asmbl_16623	none	blat.proc3829897.chain_739	1	STRG.19811.1,Trinity_GG_28110_c0_g1_i1,blat.proc3829897.chain_738	3
scaffold_10	retained_intron	6870397	6870533	-	asmbl_3426,asmbl_3429	none	Trinity_GG_24004_c0_g1_i5,blat.proc3829893.chain_994	2	STRG.12505.1,blat.proc3829893.chain_990,blat.proc3829893.chain_991,blat.proc3829893.chain_996,blat.proc3829893.chain_997,blat.proc3829893.chain_998,blat.proc3829893.chain_999	7
scaffold_10	starts_in_intron	2682750	2682750	+	asmbl_4274	none	Trinity_GG_6721_c0_g1_i4,blat.proc3829877.chain_781	2	STRG.12078.1,blat.proc3829877.chain_780	2
scaffold_6	starts_in_intron	4480717	4480717	-	asmbl_48265	none	blat.proc3829889.chain_3398	1	STRG.7417.1,blat.proc3829889.chain_3399	2
scaffold_1	starts_in_intron	11176902	11176902	+	asmbl_2072,asmbl_2073	none	blat.proc3829871.chain_819,blat.proc3829871.chain_822	2	STRG.743.1,STRG.743.2,STRG.743.3,STRG.743.4,STRG.743.5,blat.proc3829871.chain_815,blat.proc3829871.chain_820,blat.proc3829871.chain_821,blat.proc3829871.chain_824,blat.proc3829871.chain_825	10
scaffold_11	spliced_intron	9926131	9926272	+	asmbl_5882	none	STRG.13999.1,Trinity_GG_7727_c1_g1_i2,blat.proc3829877.chain_2502	3	blat.proc3829877.chain_2501	1
scaffold_14	starts_in_intron	203705	203705	-	asmbl_12783	none	STRG.16702.2,blat.proc3829895.chain_1407	2	STRG.16702.1,STRG.16702.3,STRG.16702.4,blat.proc3829895.chain_1406,blat.proc3829895.chain_1408,blat.proc3829895.chain_1409	6
scaffold_15	alternate_exon	7184177	7184303	-	asmbl_15296	none	STRG.18300.3,blat.proc3829895.chain_2963	2	STRG.18300.1,STRG.18300.2,blat.proc3829895.chain_2964,blat.proc3829895.chain_2965	4
scaffold_4	retained_intron	9965598	9965735	-	asmbl_41570	none	STRG.4758.1,blat.proc3829889.chain_822	2	blat.proc3829889.chain_824	1
scaffold_24	skipped_exon	4280610	4281152	+	asmbl_32190	none	STRG.26568.1,blat.proc3829883.chain_3466	2	STRG.26568.2,STRG.26568.3,blat.proc3829883.chain_3465	3
scaffold_2	alternate_exon	5703656	5703729	-	asmbl_23183	none	STRG.1957.3	1	STRG.1957.1,STRG.1957.2,blat.proc3829887.chain_1851,blat.proc3829887.chain_1852,blat.proc3829887.chain_1853	5
scaffold_25	alternate_exon	4818534	4818694	+	asmbl_33538	none	STRG.27398.4	1	Trinity_GG_15069_c0_g1_i3,blat.proc3829885.chain_358	2
scaffold_6	spliced_intron	3056924	3057109	+	asmbl_46743,asmbl_46744,asmbl_46746,asmbl_46750,asmbl_46751,asmbl_46752,asmbl_46753	none	STRG.7308.1,STRG.7308.2,blat.proc3829873.chain_3438,blat.proc3829873.chain_3440,blat.proc3829873.chain_3442,blat.proc3829873.chain_3444,blat.proc3829873.chain_3445,blat.proc3829873.chain_3446	8	blat.proc3829873.chain_3439,blat.proc3829873.chain_3443	2
scaffold_17	spliced_intron	7671529	7672234	+	asmbl_18047	none	STRG.20394.1,blat.proc3829881.chain_1178	2	Trinity_GG_11176_c0_g1_i2,blat.proc3829881.chain_1179	2
scaffold_20	alt_donor	10986544	10986545	+	asmbl_26157,asmbl_26159	none	STRG.23608.1,Trinity_GG_13068_c0_g1_i1,Trinity_GG_13068_c0_g1_i4,blat.proc3829883.chain_750,blat.proc3829883.chain_751	5	STRG.23608.3	1
scaffold_17	alt_donor	1294192	1294193	-	asmbl_18732	none	STRG.19949.1,blat.proc3829897.chain_824	2	STRG.19949.2	1
scaffold_17	alternate_exon	9005703	9009347	+	asmbl_18180	none	STRG.20513.3,blat.proc3829881.chain_1319	2	blat.proc3829881.chain_1322	1
scaffold_22	spliced_intron	752536	752836	+	asmbl_29183	none	STRG.24716.1,Trinity_GG_13676_c0_g1_i1,blat.proc3829883.chain_1786	3	Trinity_GG_13676_c0_g1_i3,blat.proc3829883.chain_1785	2
scaffold_2	spliced_intron	7876589	7876880	+	asmbl_24618,asmbl_24621,asmbl_24622,asmbl_24623,asmbl_24624	none	STRG.2087.1,Trinity_GG_1183_c0_g1_i10,Trinity_GG_1183_c0_g1_i14,Trinity_GG_1183_c0_g1_i16,Trinity_GG_1183_c0_g1_i18,Trinity_GG_1183_c0_g1_i2,blat.proc3829871.chain_2179,blat.proc3829871.chain_2180,blat.proc3829871.chain_2181,blat.proc3829871.chain_2182,blat.proc3829871.chain_2185	11	Trinity_GG_1183_c0_g1_i7,blat.proc3829871.chain_2184	2
scaffold_2	retained_exon	14548889	14549008	+	asmbl_24982	none	STRG.2454.2	1	STRG.2454.1	1
scaffold_9	spliced_intron	11851343	11852018	-	asmbl_55301	none	STRG.11492.1,blat.proc3829891.chain_3611	2	Trinity_GG_23351_c1_g1_i2,blat.proc3829891.chain_3612	2
scaffold_9	alternate_exon	18389688	18389712	+	asmbl_54640	none	blat.proc3829877.chain_595	1	STRG.11879.1,STRG.11879.3	2
scaffold_5	alternate_exon	2601797	2608392	+	asmbl_43855	none	blat.proc3829873.chain_1902	1	STRG.5778.2,Trinity_GG_3129_c1_g1_i1,blat.proc3829873.chain_1905	3
scaffold_825	alt_donor	3657	3658	+	asmbl_53669	none	STRG.30456.2	1	STRG.30456.1	1
scaffold_24	starts_in_intron	6905305	6905305	+	asmbl_32366	none	blat.proc3829883.chain_3633	1	STRG.26731.1,Trinity_GG_14781_c0_g1_i2,blat.proc3829883.chain_3632	3
scaffold_8	ends_in_intron	12914764	12914764	-	asmbl_53257,asmbl_53258	none	STRG.10471.6,STRG.10471.7,blat.proc3829891.chain_2572,blat.proc3829891.chain_2573	4	STRG.10471.2,STRG.10471.3,STRG.10471.4,STRG.10471.5,blat.proc3829891.chain_2571	5
scaffold_13	alt_acceptor	8211272	8211273	-	asmbl_9912	none	STRG.16097.2	1	STRG.16097.1	1
scaffold_8	ends_in_intron	9476635	9476635	-	asmbl_53042	none	blat.proc3829891.chain_2372	1	STRG.10199.1,Trinity_GG_22714_c0_g1_i6,blat.proc3829891.chain_2373,blat.proc3829891.chain_2374,blat.proc3829891.chain_2375	5
scaffold_28	retained_intron	295738	295857	+	asmbl_37965	none	blat.proc3829885.chain_2400	1	STRG.29243.1,STRG.29243.2,STRG.29243.3,blat.proc3829885.chain_2398,blat.proc3829885.chain_2399,blat.proc3829885.chain_2401	6
scaffold_5	retained_intron	10290524	10290823	-	asmbl_45718	none	blat.proc3829889.chain_2328	1	STRG.6316.1,blat.proc3829889.chain_2329	2
scaffold_8	skipped_exon	11560060	11561679	+	asmbl_52221	none	STRG.10343.2	1	STRG.10343.1,Trinity_GG_5764_c0_g1_i2,blat.proc3829875.chain_2866,blat.proc3829875.chain_2867	4
scaffold_1	retained_intron	14349751	14349879	-	asmbl_902	none	blat.proc3829887.chain_927	1	STRG.1030.1,STRG.1030.2,blat.proc3829887.chain_924,blat.proc3829887.chain_925,blat.proc3829887.chain_926,blat.proc3829887.chain_928	6
scaffold_15	spliced_intron	13706834	13706990	-	asmbl_15675	none	STRG.18791.2	1	STRG.18791.1,Trinity_GG_27541_c0_g1_i2,Trinity_GG_27541_c0_g1_i3,blat.proc3829895.chain_3509,blat.proc3829895.chain_3510	5
scaffold_16	starts_in_intron	5509859	5509859	-	asmbl_16293	none	blat.proc3829897.chain_294	1	blat.proc3829897.chain_295	1
scaffold_20	alt_donor	5924972	5924973	-	asmbl_26710,asmbl_26712,asmbl_26713	none	STRG.23184.2,blat.proc3829899.chain_145,blat.proc3829899.chain_148,blat.proc3829899.chain_150	4	STRG.23184.3,blat.proc3829899.chain_144,blat.proc3829899.chain_149	3
scaffold_28	alt_acceptor	2616375	2616376	+	asmbl_38081	none	STRG.29414.1	1	STRG.29414.2	1
scaffold_6	starts_in_intron	2700783	2700783	+	asmbl_46714	none	blat.proc3829873.chain_3396	1	STRG.7263.1,blat.proc3829873.chain_3397	2
scaffold_9	alt_acceptor	11837876	11837877	-	asmbl_55288,asmbl_55291,asmbl_55292	none	STRG.11489.3,blat.proc3829891.chain_3603,blat.proc3829891.chain_3604	3	STRG.11489.1,STRG.11489.2,blat.proc3829891.chain_3601,blat.proc3829891.chain_3602	4
scaffold_16	retained_intron	10448911	10449544	+	asmbl_17336,asmbl_17337	none	STRG.19602.3,Trinity_GG_10708_c0_g1_i1,blat.proc3829881.chain_425,blat.proc3829881.chain_426	4	STRG.19602.1,Trinity_GG_10708_c0_g1_i3,blat.proc3829881.chain_423,blat.proc3829881.chain_424	4
scaffold_2	ends_in_intron	16413786	16413786	-	asmbl_23708	none	STRG.2585.3	1	STRG.2585.1,STRG.2585.2,blat.proc3829887.chain_2409,blat.proc3829887.chain_2410,blat.proc3829887.chain_2412,blat.proc3829887.chain_2413	6
scaffold_16	alternate_exon	436475	441991	-	asmbl_16038	none	STRG.19039.4,Trinity_GG_27679_c2_g1_i2,Trinity_GG_27679_c2_g2_i1,blat.proc3829897.chain_35	4	blat.proc3829897.chain_32	1
scaffold_13	retained_intron	221295	221368	+	asmbl_10434	none	blat.proc3829879.chain_99	1	STRG.15414.1,blat.proc3829879.chain_100,blat.proc3829879.chain_98	3
scaffold_24	retained_intron	9096592	9096710	-	asmbl_33122	none	blat.proc3829901.chain_179	1	STRG.26931.1,blat.proc3829901.chain_181	2
scaffold_5	spliced_intron	10536961	10538269	-	asmbl_45746,asmbl_45750,asmbl_45751	none	STRG.6329.3,Trinity_GG_20579_c0_g1_i4,Trinity_GG_20579_c0_g1_i7,blat.proc3829889.chain_2427	4	STRG.6329.1,STRG.6329.4,blat.proc3829889.chain_2424,blat.proc3829889.chain_2425,blat.proc3829889.chain_2428	5
scaffold_2	alternate_exon	6507524	6510560	-	asmbl_23236,asmbl_23238	none	STRG.2013.2,blat.proc3829887.chain_1932	2	Trinity_GG_18148_c0_g1_i2,blat.proc3829887.chain_1933	2
scaffold_14	retained_intron	6427617	6427975	-	asmbl_13111	none	blat.proc3829895.chain_1775	1	STRG.17075.1,blat.proc3829895.chain_1774	2
scaffold_22	alt_acceptor	708590	708591	-	asmbl_29882,asmbl_29883	none	STRG.24709.1,STRG.24709.2,blat.proc3829899.chain_1781,blat.proc3829899.chain_1782	4	blat.proc3829899.chain_1783	1
scaffold_11	starts_in_intron	4753000	4753000	+	asmbl_5476	none	STRG.13563.3	1	STRG.13563.1,STRG.13563.2,blat.proc3829877.chain_2008,blat.proc3829877.chain_2010	4
scaffold_7	alternate_exon	1450112	1450145	-	asmbl_49547	none	Trinity_GG_21961_c4_g1_i1,blat.proc3829891.chain_1038	2	STRG.8632.1,STRG.8632.2	2
scaffold_10	starts_in_intron	13423705	13423705	+	asmbl_4868	none	Trinity_GG_7121_c2_g1_i1	1	STRG.12920.1	1
scaffold_12	alt_acceptor	13396705	13396706	-	asmbl_8073,asmbl_8080	none	STRG.15208.2,blat.proc3829893.chain_3625,blat.proc3829893.chain_3626	3	STRG.15208.3	1
scaffold_14	retained_intron	4782236	4782441	-	asmbl_13053,asmbl_13054	none	STRG.16995.2,STRG.16995.4	2	STRG.16995.1,STRG.16995.3,blat.proc3829895.chain_1702,blat.proc3829895.chain_1703	4
scaffold_1	ends_in_intron	9514954	9514954	-	asmbl_545	none	Trinity_GG_17357_c0_g1_i1,blat.proc3829887.chain_542	2	STRG.643.1,blat.proc3829887.chain_541,blat.proc3829887.chain_543	3
scaffold_5	alternate_exon	2234892	2234910	-	asmbl_45269	none	blat.proc3829889.chain_1846	1	STRG.5750.2	1
scaffold_12	alt_acceptor	10187619	10187620	-	asmbl_7858,asmbl_7859,asmbl_7860,asmbl_7865	none	STRG.14979.1,STRG.14979.2,STRG.14979.5,blat.proc3829893.chain_3400,blat.proc3829893.chain_3401,blat.proc3829893.chain_3403,blat.proc3829893.chain_3405	7	STRG.14979.4,STRG.14979.6	2
scaffold_11	starts_in_intron	12053090	12053090	-	asmbl_7047	none	blat.proc3829893.chain_2450	1	STRG.14115.1,blat.proc3829893.chain_2451	2
scaffold_23	skipped_exon	4949839	4950422	+	asmbl_30837	none	STRG.25865.1,Trinity_GG_14281_c0_g1_i3,blat.proc3829883.chain_2757	3	Trinity_GG_14281_c0_g1_i2,blat.proc3829883.chain_2756	2
scaffold_12	spliced_intron	14100589	14100679	-	asmbl_8106	none	STRG.15222.1	1	Trinity_GG_25544_c0_g1_i1,blat.proc3829893.chain_3672	2
scaffold_16	alt_acceptor	7372487	7372488	+	asmbl_17133	none	STRG.19387.1,blat.proc3829881.chain_230	2	STRG.19387.2,STRG.19387.3,blat.proc3829881.chain_228,blat.proc3829881.chain_229	4
scaffold_28	spliced_intron	5390808	5391483	+	asmbl_38281,asmbl_38283	none	STRG.29664.3,Trinity_GG_16450_c0_g1_i7,blat.proc3829885.chain_2783	3	STRG.29664.4,Trinity_GG_16450_c0_g1_i3,blat.proc3829885.chain_2785	3
scaffold_7	ends_in_intron	12541080	12541080	-	asmbl_50057	none	Trinity_GG_22269_c0_g1_i3,blat.proc3829891.chain_1569	2	STRG.9352.1,STRG.9352.3,STRG.9352.4,STRG.9352.5,blat.proc3829891.chain_1570,blat.proc3829891.chain_1571	6
scaffold_9	retained_intron	9369953	9370052	+	asmbl_54185	none	blat.proc3829875.chain_3692	1	STRG.11279.1,blat.proc3829875.chain_3691,blat.proc3829875.chain_3693	3
scaffold_21	retained_intron	3192371	3192392	+	asmbl_28497,asmbl_28498,asmbl_28500	none	blat.proc3829883.chain_1040,blat.proc3829883.chain_1041,blat.proc3829883.chain_1042	3	STRG.23934.1	1
scaffold_14	alt_acceptor	10641384	10641385	+	asmbl_12316	none	STRG.17402.1,blat.proc3829879.chain_2064	2	STRG.17402.2	1
scaffold_15	skipped_exon	6961151	6961829	+	asmbl_14213	none	STRG.18295.2	1	STRG.18295.1	1
scaffold_8	retained_intron	16384026	16384136	+	asmbl_52439	none	STRG.10610.2	1	STRG.10610.1,Trinity_GG_5895_c0_g1_i1,blat.proc3829875.chain_3104	3
scaffold_9	spliced_intron	8396091	8396249	+	asmbl_54155,asmbl_54156,asmbl_54157,asmbl_54158,asmbl_54161	none	STRG.11249.1,STRG.11249.2,STRG.11249.3,STRG.11249.4,STRG.11249.5,blat.proc3829877.chain_17,blat.proc3829877.chain_18,blat.proc3829877.chain_19,blat.proc3829877.chain_20	9	blat.proc3829877.chain_21	1
scaffold_9	spliced_intron	16561348	16562614	-	asmbl_55545,asmbl_55548,asmbl_55549	none	STRG.11797.1,STRG.11797.4,STRG.11797.5,Trinity_GG_23481_c0_g3_i5,Trinity_GG_23481_c0_g3_i6,blat.proc3829893.chain_85,blat.proc3829893.chain_88	7	STRG.11797.2,STRG.11797.3,STRG.11797.6,Trinity_GG_23481_c0_g2_i1,blat.proc3829893.chain_82	5
scaffold_7	ends_in_intron	4900329	4900329	+	asmbl_50641	none	Trinity_GG_4830_c1_g1_i4	1	STRG.8829.2,blat.proc3829875.chain_1196	2
scaffold_15	ends_in_intron	14664675	14664675	+	asmbl_14640	none	blat.proc3829879.chain_3461	1	STRG.18874.1,Trinity_GG_10354_c0_g1_i4,blat.proc3829879.chain_3459	3
scaffold_3	retained_exon	1765568	1765987	+	asmbl_39834	none	STRG.2990.1	1	STRG.2990.2	1
scaffold_22	alt_donor	10320314	10320315	+	asmbl_29643	none	STRG.25367.2	1	STRG.25367.1,STRG.25367.3	2
scaffold_5	alt_donor	10600223	10600224	-	asmbl_45754	none	STRG.6336.1,blat.proc3829889.chain_2434	2	STRG.6336.2,STRG.6336.3,blat.proc3829889.chain_2433,blat.proc3829889.chain_2435	4
scaffold_16	retained_intron	6198531	6198916	+	asmbl_17094	none	STRG.19374.2,blat.proc3829881.chain_202	2	STRG.19374.1	1
scaffold_7	spliced_intron	13019692	13019783	-	asmbl_50093	none	STRG.9408.1	1	blat.proc3829891.chain_1655	1
scaffold_24	retained_intron	6432023	6432210	-	asmbl_32949	none	blat.proc3829899.chain_3723	1	STRG.26677.1,blat.proc3829899.chain_3722	2
scaffold_8	ends_in_intron	11580143	11580143	+	asmbl_52227	none	blat.proc3829875.chain_2774	1	STRG.10355.1,blat.proc3829875.chain_2769,blat.proc3829875.chain_2770,blat.proc3829875.chain_2771	4
scaffold_9	retained_exon	15495475	15495510	-	asmbl_55496	none	STRG.11737.1,blat.proc3829893.chain_120	2	STRG.11737.3,blat.proc3829893.chain_117	2
scaffold_20	spliced_intron	11438436	11438575	+	asmbl_26199,asmbl_26200	none	STRG.23635.2,STRG.23635.3,blat.proc3829883.chain_776,blat.proc3829883.chain_778	4	STRG.23635.1,blat.proc3829883.chain_777	2
scaffold_24	skipped_exon	6225543	6226490	-	asmbl_32935	none	Trinity_GG_31899_c0_g1_i9,blat.proc3829899.chain_3692	2	STRG.26664.1,Trinity_GG_31899_c0_g1_i6,blat.proc3829899.chain_3686,blat.proc3829899.chain_3688	4
scaffold_15	alt_acceptor	375432	375433	+	asmbl_13905	none	STRG.17874.2	1	STRG.17874.1,blat.proc3829879.chain_2554	2
scaffold_4	retained_intron	16479929	16480208	-	asmbl_41929	none	Trinity_GG_19942_c2_g1_i1,blat.proc3829889.chain_1295	2	STRG.5226.1,STRG.5226.2,STRG.5226.3,blat.proc3829889.chain_1289,blat.proc3829889.chain_1292,blat.proc3829889.chain_1293	6
scaffold_3	alt_acceptor	10628899	10628900	+	asmbl_40237	none	blat.proc3829871.chain_3606	1	STRG.3509.2,STRG.3509.3,blat.proc3829871.chain_3604,blat.proc3829871.chain_3605	4
scaffold_4	starts_in_intron	15437578	15437578	-	asmbl_41849	none	blat.proc3829889.chain_1147	1	STRG.5140.1,blat.proc3829889.chain_1148	2
scaffold_6	starts_in_intron	7350627	7350627	+	asmbl_47006	none	Trinity_GG_4173_c0_g1_i2,blat.proc3829873.chain_3734	2	STRG.7636.1,blat.proc3829873.chain_3732	2
scaffold_25	alt_acceptor	2089152	2089153	-	asmbl_34047	none	blat.proc3829901.chain_540	1	STRG.27196.1,STRG.27196.2	2
scaffold_1	retained_intron	13130586	13130726	-	asmbl_805	none	blat.proc3829887.chain_829	1	STRG.951.1,blat.proc3829887.chain_830	2
scaffold_22	retained_intron	5923485	5923610	+	asmbl_29362	none	Trinity_GG_13792_c0_g1_i3,blat.proc3829883.chain_1978	2	STRG.24922.1,STRG.24922.2,Trinity_GG_13792_c0_g1_i1,blat.proc3829883.chain_1977,blat.proc3829883.chain_1979	5
scaffold_11	ends_in_intron	176704	176704	+	asmbl_5227	none	STRG.13233.2	1	STRG.13233.1,blat.proc3829877.chain_1766,blat.proc3829877.chain_1767,blat.proc3829877.chain_1769	4
scaffold_5	alt_acceptor	988895	988896	-	asmbl_45200,asmbl_45201,asmbl_45202	none	STRG.5644.2,STRG.5644.3,STRG.5644.4	3	STRG.5644.1,blat.proc3829889.chain_1764,blat.proc3829889.chain_1765	3
scaffold_26	starts_in_intron	5561971	5561971	+	asmbl_35547	none	STRG.28248.3	1	STRG.28248.1	1
scaffold_2	retained_exon	17715161	17715202	-	asmbl_23756,asmbl_23757	none	STRG.2670.1,STRG.2670.2,blat.proc3829887.chain_2448,blat.proc3829887.chain_2450	4	STRG.2670.4,blat.proc3829887.chain_2449,blat.proc3829887.chain_2451	3
scaffold_16	skipped_exon	3710573	3711063	-	asmbl_16166	none	STRG.19167.1,blat.proc3829897.chain_170	2	blat.proc3829897.chain_169	1
scaffold_15	retained_intron	13706834	13706990	-	asmbl_15674	none	STRG.18791.1,Trinity_GG_27541_c0_g1_i2,Trinity_GG_27541_c0_g1_i3,blat.proc3829895.chain_3509,blat.proc3829895.chain_3510	5	STRG.18791.2	1
scaffold_21	alt_acceptor	706527	706528	-	asmbl_27377	none	STRG.23751.1,Trinity_GG_30242_c0_g2_i1,blat.proc3829899.chain_811,blat.proc3829899.chain_818	4	Trinity_GG_30242_c0_g1_i8,blat.proc3829899.chain_813	2
scaffold_5	skipped_exon	9648398	9650888	+	asmbl_44290	none	STRG.6270.1,blat.proc3829873.chain_2367	2	STRG.6270.2,blat.proc3829873.chain_2368	2
scaffold_2	spliced_intron	885396	885480	+	asmbl_24142,asmbl_24144,asmbl_24145	none	STRG.1563.2,STRG.1563.3,blat.proc3829871.chain_1566	3	blat.proc3829871.chain_1567	1
scaffold_5	alt_donor	8764198	8764199	-	asmbl_45621	none	Trinity_GG_20507_c0_g1_i3,blat.proc3829889.chain_2290	2	STRG.6204.2,Trinity_GG_20507_c0_g1_i1,blat.proc3829889.chain_2287	3
scaffold_21	starts_in_intron	1042648	1042648	+	asmbl_28343	none	STRG.23775.2	1	STRG.23775.1,blat.proc3829883.chain_840	2
scaffold_22	spliced_intron	4416451	4416579	-	asmbl_30027	none	STRG.24852.1,blat.proc3829899.chain_1905	2	blat.proc3829899.chain_1904	1
scaffold_18	ends_in_intron	8914756	8914756	-	asmbl_20077	none	Trinity_GG_29067_c0_g2_i1,blat.proc3829897.chain_2399	2	STRG.21550.2,STRG.21550.4,blat.proc3829897.chain_2394,blat.proc3829897.chain_2398	4
scaffold_3	retained_intron	12445250	12446860	+	asmbl_40357	none	STRG.3636.1,Trinity_GG_2050_c0_g1_i1,blat.proc3829873.chain_54	3	blat.proc3829873.chain_53	1
scaffold_13	alt_donor	13972082	13972083	+	asmbl_11395	none	STRG.16435.3,Trinity_GG_9032_c1_g1_i1	2	blat.proc3829879.chain_1167,blat.proc3829879.chain_1168,blat.proc3829879.chain_1169	3
scaffold_13	alt_acceptor	6396401	6396402	+	asmbl_10908,asmbl_10915	none	STRG.15914.3,STRG.15914.4,Trinity_GG_8718_c0_g1_i9,blat.proc3829879.chain_552	4	Trinity_GG_8718_c0_g1_i8,blat.proc3829879.chain_556	2
scaffold_10	alt_acceptor	5495944	5495945	-	asmbl_3281,asmbl_3283	none	STRG.12375.1,blat.proc3829893.chain_814,blat.proc3829893.chain_816	3	blat.proc3829893.chain_815	1
scaffold_16	alternate_exon	11773990	11774028	+	asmbl_17406	none	STRG.19687.1,Trinity_GG_10780_c0_g1_i2,blat.proc3829881.chain_541	3	Trinity_GG_10780_c0_g1_i1,blat.proc3829881.chain_540	2
scaffold_2	spliced_intron	2076731	2076944	+	asmbl_24260	none	blat.proc3829871.chain_1750	1	STRG.1663.1,STRG.1663.2,Trinity_GG_950_c0_g1_i1,Trinity_GG_950_c0_g1_i3,blat.proc3829871.chain_1747,blat.proc3829871.chain_1748	6
scaffold_5	spliced_intron	107811	108165	-	asmbl_45143	none	STRG.5570.2	1	STRG.5570.1,Trinity_GG_20162_c0_g1_i5	2
scaffold_11	starts_in_intron	15833428	15833428	+	asmbl_6119	none	Trinity_GG_7857_c0_g1_i4	1	STRG.14312.1,blat.proc3829877.chain_2734,blat.proc3829877.chain_2735	3
scaffold_8	spliced_intron	5314598	5314889	-	asmbl_52823	none	STRG.9959.2,blat.proc3829891.chain_2070	2	STRG.9959.1,Trinity_GG_22542_c0_g1_i1,blat.proc3829891.chain_2069	3
scaffold_2	spliced_intron	10640331	10640648	-	asmbl_23441,asmbl_23442	none	STRG.2225.2,blat.proc3829887.chain_2055	2	STRG.2225.1,blat.proc3829887.chain_2056,blat.proc3829887.chain_2057,blat.proc3829887.chain_2058	4
scaffold_22	alt_acceptor	7437595	7437596	-	asmbl_30164,asmbl_30167	none	STRG.25066.4,STRG.25066.5,blat.proc3829899.chain_2152	3	STRG.25066.1,STRG.25066.2,STRG.25066.3,blat.proc3829899.chain_2153,blat.proc3829899.chain_2154,blat.proc3829899.chain_2155	6
scaffold_24	retained_exon	1064558	1064661	+	asmbl_32074	none	STRG.26360.5	1	STRG.26360.2,Trinity_GG_14583_c0_g1_i2,blat.proc3829883.chain_3293	3
scaffold_15	starts_in_intron	2825004	2825004	-	asmbl_15063	none	blat.proc3829895.chain_2818	1	STRG.18059.1,STRG.18059.2,blat.proc3829895.chain_2816	3
scaffold_23	retained_intron	6289122	6289248	-	asmbl_31689,asmbl_31693,asmbl_31694	none	STRG.25954.2,Trinity_GG_31552_c0_g1_i6,blat.proc3829899.chain_3103,blat.proc3829899.chain_3107	4	STRG.25954.1,Trinity_GG_31552_c0_g1_i2,Trinity_GG_31552_c0_g1_i3,Trinity_GG_31552_c0_g1_i4,Trinity_GG_31552_c0_g1_i5,Trinity_GG_31552_c0_g1_i7,blat.proc3829899.chain_3101,blat.proc3829899.chain_3102,blat.proc3829899.chain_3104,blat.proc3829899.chain_3105,blat.proc3829899.chain_3106	11
scaffold_27	retained_intron	638380	638592	-	asmbl_36660	none	Trinity_GG_32989_c1_g1_i3,blat.proc3829901.chain_1760	2	Trinity_GG_32989_c1_g1_i5,blat.proc3829901.chain_1762	2
scaffold_28	alt_acceptor	36652	36653	+	asmbl_37943	none	blat.proc3829885.chain_2360	1	STRG.29211.1,STRG.29211.2,blat.proc3829885.chain_2359,blat.proc3829885.chain_2361	4
scaffold_1	alternate_exon	19356734	19358166	+	asmbl_2577	none	STRG.1346.1,Trinity_GG_788_c0_g1_i2,blat.proc3829871.chain_1388	3	STRG.1346.2	1
scaffold_3	spliced_intron	11270000	11270142	+	asmbl_40288	none	STRG.3548.1,Trinity_GG_2012_c0_g1_i2,blat.proc3829871.chain_3732	3	Trinity_GG_2012_c0_g1_i1,blat.proc3829871.chain_3733	2
scaffold_6	spliced_intron	13246578	13246726	-	asmbl_48838,asmbl_48839	none	STRG.8078.1,STRG.8078.2	2	blat.proc3829891.chain_387	1
scaffold_15	ends_in_intron	5319331	5319331	-	asmbl_15203,asmbl_15205	none	STRG.18211.2,Trinity_GG_27242_c0_g1_i2,Trinity_GG_27242_c0_g1_i3,blat.proc3829895.chain_2926,blat.proc3829895.chain_2928	5	STRG.18211.1,blat.proc3829895.chain_2925,blat.proc3829895.chain_2927,blat.proc3829895.chain_2929	4
scaffold_17	retained_intron	1512991	1513501	-	asmbl_18765	none	Trinity_GG_28232_c1_g1_i1,blat.proc3829897.chain_953	2	STRG.19976.1,blat.proc3829897.chain_951,blat.proc3829897.chain_952	3
scaffold_1	ends_in_intron	14199468	14199468	+	asmbl_2328	none	blat.proc3829871.chain_1044	1	STRG.1004.1,STRG.1004.2,Trinity_GG_586_c0_g1_i1,Trinity_GG_586_c0_g1_i3,Trinity_GG_586_c0_g1_i4,Trinity_GG_586_c0_g1_i5,blat.proc3829871.chain_1045,blat.proc3829871.chain_1046,blat.proc3829871.chain_1048,blat.proc3829871.chain_1049,blat.proc3829871.chain_1052	11
scaffold_14	retained_exon	404838	405058	+	asmbl_11720,asmbl_11721,asmbl_11722,asmbl_11723	none	STRG.16722.1,STRG.16722.3,STRG.16722.4,Trinity_GG_9219_c0_g1_i21,Trinity_GG_9219_c0_g1_i3,Trinity_GG_9219_c0_g1_i6,blat.proc3829879.chain_1463,blat.proc3829879.chain_1464,blat.proc3829879.chain_1465,blat.proc3829879.chain_1468,blat.proc3829879.chain_1474	11	STRG.16722.2,STRG.16722.5,STRG.16722.6,blat.proc3829879.chain_1467,blat.proc3829879.chain_1470	5
scaffold_11	starts_in_intron	856306	856306	+	asmbl_5270,asmbl_5271	none	STRG.13271.3,blat.proc3829877.chain_1719	2	STRG.13271.1,STRG.13271.2,blat.proc3829877.chain_1716,blat.proc3829877.chain_1717,blat.proc3829877.chain_1718	5
scaffold_2	alt_acceptor	3805904	3805905	-	asmbl_23030	none	STRG.1821.2	1	STRG.1821.1,blat.proc3829887.chain_1645	2
scaffold_4	spliced_intron	4911794	4911995	+	asmbl_42641,asmbl_42642,asmbl_42645	none	STRG.4386.1,STRG.4386.2,STRG.4386.3,blat.proc3829873.chain_780	4	Trinity_GG_2443_c0_g1_i3,blat.proc3829873.chain_777,blat.proc3829873.chain_779	3
scaffold_5	alt_acceptor	16350425	16350426	+	asmbl_44756	none	Trinity_GG_3720_c0_g1_i1,blat.proc3829873.chain_2936	2	STRG.6821.1	1
scaffold_23	starts_in_intron	10209241	10209241	+	asmbl_31134,asmbl_31135	none	STRG.26209.3,Trinity_GG_14506_c0_g1_i13,blat.proc3829883.chain_3157,blat.proc3829883.chain_3159	4	STRG.26209.1,STRG.26209.2,blat.proc3829883.chain_3155,blat.proc3829883.chain_3156,blat.proc3829883.chain_3158	5
scaffold_12	alt_donor	12397457	12397458	-	asmbl_8011	none	STRG.15128.1,blat.proc3829893.chain_3552	2	STRG.15128.2,STRG.15128.3	2
scaffold_1	alt_acceptor	4273762	4273763	+	asmbl_1657,asmbl_1658,asmbl_1660	none	STRG.259.1,STRG.259.2,STRG.259.4,blat.proc3829871.chain_321	4	STRG.259.3	1
scaffold_27	starts_in_intron	607295	607295	+	asmbl_35919	none	Trinity_GG_15807_c0_g1_i1,blat.proc3829885.chain_1600	2	blat.proc3829885.chain_1599	1
scaffold_16	alt_donor	12022851	12022852	-	asmbl_16561,asmbl_16562	none	STRG.19718.1,STRG.19718.2,blat.proc3829897.chain_670,blat.proc3829897.chain_671	4	STRG.19718.3	1
scaffold_10	retained_intron	12679575	12679670	+	asmbl_4810	none	STRG.12848.1,blat.proc3829877.chain_1442	2	STRG.12848.2,blat.proc3829877.chain_1443	2
scaffold_21	retained_intron	5537513	5537636	-	asmbl_27698,asmbl_27699,asmbl_27702,asmbl_27703,asmbl_27704	none	STRG.24073.2,STRG.24073.3,Trinity_GG_30443_c0_g1_i6,blat.proc3829899.chain_1163,blat.proc3829899.chain_1166,blat.proc3829899.chain_1168	6	STRG.24073.1,blat.proc3829899.chain_1165,blat.proc3829899.chain_1167	3
scaffold_15	alt_acceptor	1422574	1422575	-	asmbl_14964	none	STRG.17937.2	1	STRG.17937.1,blat.proc3829895.chain_2638	2
scaffold_12	starts_in_intron	977326	977326	-	asmbl_7421	none	STRG.14425.2,blat.proc3829893.chain_2838	2	STRG.14425.1,STRG.14425.3,STRG.14425.4,blat.proc3829893.chain_2839,blat.proc3829893.chain_2840	5
scaffold_5	spliced_intron	14601535	14601964	-	asmbl_45985	none	STRG.6652.2,blat.proc3829889.chain_2699	2	STRG.6652.1,Trinity_GG_20743_c0_g1_i2,blat.proc3829889.chain_2700	3
scaffold_6	alternate_exon	10917403	10917860	+	asmbl_47246	none	STRG.7900.3,Trinity_GG_4305_c0_g1_i1,blat.proc3829875.chain_229,blat.proc3829875.chain_230	4	STRG.7900.1,Trinity_GG_4305_c0_g1_i2,blat.proc3829875.chain_231	3
scaffold_1	retained_intron	12410452	12410983	+	asmbl_2196	none	Trinity_GG_524_c0_g1_i1,blat.proc3829871.chain_942	2	STRG.853.2	1
scaffold_7	spliced_intron	16829914	16830413	-	asmbl_50239	none	STRG.9583.1,Trinity_GG_22380_c0_g1_i1,blat.proc3829891.chain_1790	3	Trinity_GG_22380_c0_g1_i2,blat.proc3829891.chain_1791	2
scaffold_22	alt_acceptor	4873822	4873823	-	asmbl_30045,asmbl_30046	none	STRG.24898.1,STRG.24898.2,blat.proc3829899.chain_1915,blat.proc3829899.chain_1916	4	STRG.24898.3,blat.proc3829899.chain_1917	2
scaffold_2	alternate_exon	8873952	8874085	+	asmbl_24688,asmbl_24689,asmbl_24690	none	STRG.2139.1,STRG.2139.3,STRG.2139.4,blat.proc3829871.chain_2262	4	blat.proc3829871.chain_2259,blat.proc3829871.chain_2260	2
scaffold_23	retained_intron	6634496	6634635	+	asmbl_30932	none	blat.proc3829883.chain_2815	1	STRG.25985.1,STRG.25985.2,blat.proc3829883.chain_2811,blat.proc3829883.chain_2812,blat.proc3829883.chain_2813,blat.proc3829883.chain_2814,blat.proc3829883.chain_2816,blat.proc3829883.chain_2817	8
scaffold_11	retained_intron	4756244	4756446	+	asmbl_5482	none	blat.proc3829877.chain_2054	1	STRG.13564.1,blat.proc3829877.chain_2053	2
scaffold_11	spliced_intron	10322368	10322453	+	asmbl_5899	none	STRG.14028.1,blat.proc3829877.chain_2517	2	STRG.14028.2,blat.proc3829877.chain_2516	2
scaffold_19	alt_acceptor	8820149	8820150	+	asmbl_22363,asmbl_22366	none	STRG.22325.2,STRG.22325.4	2	STRG.22325.1,blat.proc3829881.chain_3253	2
scaffold_9	starts_in_intron	15495851	15495851	-	asmbl_55495	none	STRG.11737.2	1	STRG.11737.1,blat.proc3829893.chain_120	2
scaffold_12	ends_in_intron	8823071	8823071	+	asmbl_8793	none	blat.proc3829877.chain_3398	1	STRG.14875.1,Trinity_GG_8235_c0_g1_i2,Trinity_GG_8235_c0_g1_i4,Trinity_GG_8235_c0_g1_i6,blat.proc3829877.chain_3397,blat.proc3829877.chain_3399,blat.proc3829877.chain_3400	7
scaffold_17	retained_intron	14349448	14349635	-	asmbl_19475	none	blat.proc3829897.chain_1802	1	STRG.20903.2,blat.proc3829897.chain_1804,blat.proc3829897.chain_1805	3
scaffold_4	ends_in_intron	7263871	7263871	+	asmbl_42817	none	STRG.4560.1,blat.proc3829873.chain_963	2	STRG.4560.2,STRG.4560.4,blat.proc3829873.chain_964	3
scaffold_16	alt_acceptor	11930742	11930743	-	asmbl_16555	none	STRG.19705.2	1	STRG.19705.1,blat.proc3829897.chain_676	2
scaffold_8	retained_exon	9373718	9373903	-	asmbl_53020,asmbl_53022,asmbl_53023,asmbl_53026	none	STRG.10194.3,STRG.10194.4,STRG.10194.5,blat.proc3829891.chain_2356,blat.proc3829891.chain_2358	5	STRG.10194.6,blat.proc3829891.chain_2355	2
scaffold_20	retained_exon	9532630	9532662	+	asmbl_26018,asmbl_26019	none	STRG.23480.1,blat.proc3829883.chain_580	2	STRG.23480.2,blat.proc3829883.chain_576	2
scaffold_26	retained_exon	5890349	5890963	+	asmbl_35578	none	STRG.28280.1,blat.proc3829885.chain_1312	2	blat.proc3829885.chain_1314	1
scaffold_4	retained_intron	6304427	6304811	+	asmbl_42720,asmbl_42724,asmbl_42726	none	Trinity_GG_2497_c0_g1_i2,Trinity_GG_2497_c0_g1_i6,blat.proc3829873.chain_867,blat.proc3829873.chain_868	4	STRG.4502.1,STRG.4502.2,Trinity_GG_2497_c0_g1_i1,Trinity_GG_2497_c0_g1_i8,Trinity_GG_2497_c0_g1_i9,blat.proc3829873.chain_863,blat.proc3829873.chain_865,blat.proc3829873.chain_866,blat.proc3829873.chain_870,blat.proc3829873.chain_871	10
scaffold_1	alt_donor	16095748	16095749	-	asmbl_977	none	STRG.1128.1,blat.proc3829887.chain_1026	2	blat.proc3829887.chain_1025	1
scaffold_12	starts_in_intron	9236767	9236767	+	asmbl_8825	none	STRG.14913.2,blat.proc3829877.chain_3377	2	STRG.14913.1	1
scaffold_11	retained_exon	8309207	8309245	+	asmbl_5713	none	blat.proc3829877.chain_2212	1	STRG.13834.1,blat.proc3829877.chain_2211	2
scaffold_23	ends_in_intron	358581	358581	-	asmbl_31309,asmbl_31310	none	Trinity_GG_31299_c0_g1_i4,Trinity_GG_31299_c0_g1_i7,blat.proc3829899.chain_2651,blat.proc3829899.chain_2654	4	STRG.25543.1,blat.proc3829899.chain_2649,blat.proc3829899.chain_2650,blat.proc3829899.chain_2652,blat.proc3829899.chain_2653,blat.proc3829899.chain_2655,blat.proc3829899.chain_2656	7
scaffold_15	alt_acceptor	4231071	4231072	+	asmbl_14069	none	Trinity_GG_9974_c0_g1_i8,blat.proc3829879.chain_2807	2	STRG.18160.1,blat.proc3829879.chain_2809,blat.proc3829879.chain_2810,blat.proc3829879.chain_2813,blat.proc3829879.chain_2814	5
scaffold_13	alt_acceptor	739026	739027	+	asmbl_10482	none	STRG.15446.1,blat.proc3829879.chain_131	2	STRG.15446.3	1
scaffold_25	spliced_intron	6525867	6525968	-	asmbl_34339	none	blat.proc3829901.chain_847	1	STRG.27518.1	1
scaffold_18	retained_intron	9804343	9804380	-	asmbl_20122,asmbl_20124	none	STRG.21582.1,STRG.21582.2,Trinity_GG_29051_c2_g1_i1	3	STRG.21582.3	1
scaffold_26	starts_in_intron	6301533	6301533	-	asmbl_34942	none	blat.proc3829901.chain_1479	1	STRG.28309.1,STRG.28309.2,STRG.28309.3,blat.proc3829901.chain_1480,blat.proc3829901.chain_1481	5
scaffold_17	starts_in_intron	8219209	8219209	+	asmbl_18079	none	Trinity_GG_11183_c0_g3_i1,blat.proc3829881.chain_1205	2	blat.proc3829881.chain_1196	1
scaffold_10	alt_acceptor	13458240	13458241	-	asmbl_3786	none	STRG.12925.3	1	STRG.12925.1,blat.proc3829893.chain_1410	2
scaffold_1	starts_in_intron	9254732	9254732	+	asmbl_1963	none	Trinity_GG_391_c0_g1_i4,blat.proc3829871.chain_682	2	STRG.616.1,STRG.616.2,STRG.616.3,STRG.616.4,Trinity_GG_391_c0_g1_i1,Trinity_GG_391_c0_g1_i2,Trinity_GG_391_c0_g1_i3,blat.proc3829871.chain_680,blat.proc3829871.chain_681,blat.proc3829871.chain_683	10
scaffold_13	starts_in_intron	14563515	14563515	-	asmbl_10168	none	blat.proc3829895.chain_1173	1	STRG.16497.4	1
scaffold_8	spliced_intron	9466234	9466322	-	asmbl_53030,asmbl_53033,asmbl_53034,asmbl_53035	none	STRG.10197.1,blat.proc3829891.chain_2403,blat.proc3829891.chain_2405,blat.proc3829891.chain_2406,blat.proc3829891.chain_2407	5	Trinity_GG_22724_c0_g1_i7,blat.proc3829891.chain_2400,blat.proc3829891.chain_2408	3
scaffold_28	spliced_intron	5230739	5230823	-	asmbl_37582	none	Trinity_GG_33578_c0_g1_i9,blat.proc3829901.chain_2674	2	STRG.29650.2	1
scaffold_7	starts_in_intron	12420341	12420341	-	asmbl_50028	none	blat.proc3829891.chain_1566	1	STRG.9334.1,blat.proc3829891.chain_1562,blat.proc3829891.chain_1563	3
scaffold_13	alt_acceptor	396250	396251	-	asmbl_9305,asmbl_9307,asmbl_9308,asmbl_9309,asmbl_9310,asmbl_9311,asmbl_9312,asmbl_9313,asmbl_9316,asmbl_9317,asmbl_9318	none	STRG.15428.1,STRG.15428.2,STRG.15428.3,Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i25,Trinity_GG_25691_c0_g1_i7,Trinity_GG_25691_c0_g1_i8,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_221,blat.proc3829895.chain_223,blat.proc3829895.chain_224,blat.proc3829895.chain_226,blat.proc3829895.chain_229,blat.proc3829895.chain_230,blat.proc3829895.chain_232,blat.proc3829895.chain_233	19	Trinity_GG_25691_c0_g1_i20,blat.proc3829895.chain_234	2
scaffold_18	skipped_exon	5779433	5781380	+	asmbl_20638	none	blat.proc3829881.chain_2255	1	STRG.21318.1,STRG.21318.2,blat.proc3829881.chain_2250,blat.proc3829881.chain_2253	4
scaffold_4	alt_donor	10129493	10129494	-	asmbl_41578	none	blat.proc3829889.chain_788	1	STRG.4778.1,blat.proc3829889.chain_789	2
scaffold_10	alt_acceptor	11971271	11971272	+	asmbl_4782	none	STRG.12831.1,blat.proc3829877.chain_1321	2	STRG.12831.3	1
scaffold_10	ends_in_intron	5861909	5861909	-	asmbl_3317,asmbl_3318	none	Trinity_GG_23943_c1_g1_i1,Trinity_GG_23943_c1_g1_i3,blat.proc3829893.chain_874,blat.proc3829893.chain_875	4	STRG.12401.2,STRG.12401.3	2
scaffold_7	alt_donor	6624505	6624506	+	asmbl_50754	none	STRG.8925.4	1	STRG.8925.3	1
scaffold_19	alt_donor	7124019	7124020	+	asmbl_22252	none	STRG.22199.2,blat.proc3829881.chain_3140	2	STRG.22199.1,blat.proc3829881.chain_3139	2
scaffold_6	spliced_intron	4826646	4826724	-	asmbl_48301	none	STRG.7452.1,blat.proc3829889.chain_3498	2	blat.proc3829889.chain_3497	1
scaffold_3	skipped_exon	13647877	13648874	-	asmbl_39225	none	STRG.3705.3,Trinity_GG_19021_c0_g1_i3,blat.proc3829887.chain_3435	3	STRG.3705.2,Trinity_GG_19021_c0_g1_i1,blat.proc3829887.chain_3436	3
scaffold_7	spliced_intron	5928121	5929865	+	asmbl_50714	none	Trinity_GG_4833_c0_g1_i1,blat.proc3829875.chain_1203	2	STRG.8891.1,Trinity_GG_4833_c0_g1_i4,blat.proc3829875.chain_1204	3
scaffold_9	starts_in_intron	14818302	14818302	-	asmbl_55459,asmbl_55460,asmbl_55462,asmbl_55463	none	STRG.11693.3,STRG.11693.4,STRG.11693.5,blat.proc3829893.chain_3,blat.proc3829893.chain_6,blat.proc3829893.chain_7,blat.proc3829893.chain_9	7	STRG.11693.1,STRG.11693.2,STRG.11693.6,blat.proc3829893.chain_10,blat.proc3829893.chain_8	5
scaffold_2	retained_intron	13403024	13403216	+	asmbl_24884	none	STRG.2362.1,Trinity_GG_1332_c2_g1_i1,blat.proc3829871.chain_2477	3	STRG.2362.2,Trinity_GG_1332_c2_g1_i3,blat.proc3829871.chain_2478	3
scaffold_22	starts_in_intron	714969	714969	-	asmbl_29883	none	blat.proc3829899.chain_1781	1	STRG.24709.2,blat.proc3829899.chain_1782	2
scaffold_6	retained_exon	8172829	8172944	-	asmbl_48476,asmbl_48479,asmbl_48480	none	STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3716,blat.proc3829889.chain_3724	4	Trinity_GG_21366_c0_g1_i3,blat.proc3829889.chain_3717	2
scaffold_6	starts_in_intron	9059266	9059266	+	asmbl_47130	none	blat.proc3829875.chain_140	1	STRG.7774.1,blat.proc3829875.chain_141	2
scaffold_16	ends_in_intron	701616	701616	+	asmbl_16829	none	blat.proc3829879.chain_3596	1	STRG.19036.1,blat.proc3829879.chain_3595	2
scaffold_4	starts_in_intron	1638150	1638150	+	asmbl_42447	none	Trinity_GG_2334_c0_g1_i6,blat.proc3829873.chain_543	2	STRG.4195.1,STRG.4195.3,blat.proc3829873.chain_541	3
scaffold_11	alternate_exon	13382579	13382607	+	asmbl_6029,asmbl_6031	none	STRG.14189.2,blat.proc3829877.chain_2692,blat.proc3829877.chain_2694	3	STRG.14189.1,STRG.14189.3	2
scaffold_5	alt_donor	10600049	10600050	-	asmbl_45753	none	STRG.6336.3,blat.proc3829889.chain_2433	2	STRG.6336.1,STRG.6336.2,blat.proc3829889.chain_2434,blat.proc3829889.chain_2435	4
scaffold_20	alt_donor	9963341	9963342	-	asmbl_26989	none	STRG.23526.2,Trinity_GG_30138_c1_g1_i3,blat.proc3829899.chain_552,blat.proc3829899.chain_553	4	STRG.23526.1	1
scaffold_6	starts_in_intron	1500203	1500203	+	asmbl_46667	none	Trinity_GG_3963_c0_g1_i1,blat.proc3829873.chain_3342	2	STRG.7184.1,STRG.7184.2,STRG.7184.3,blat.proc3829873.chain_3341	4
scaffold_10	alternate_exon	9070613	9070845	-	asmbl_3580	none	STRG.12647.2	1	STRG.12647.1,STRG.12647.3	2
scaffold_12	starts_in_intron	16813162	16813162	+	asmbl_9156	none	Trinity_GG_8461_c0_g1_i1,blat.proc3829879.chain_55	2	STRG.15401.1	1
scaffold_3	starts_in_intron	14776807	14776807	-	asmbl_39368,asmbl_39370	none	blat.proc3829887.chain_3627	1	STRG.3820.1,STRG.3820.2,STRG.3820.3,blat.proc3829887.chain_3630	4
scaffold_27	spliced_intron	6258393	6258607	+	asmbl_36352	none	blat.proc3829885.chain_2096	1	STRG.28995.1,blat.proc3829885.chain_2098	2
scaffold_5	spliced_intron	2536271	2536552	+	asmbl_43836,asmbl_43838	none	STRG.5769.1,STRG.5769.4,blat.proc3829873.chain_1954,blat.proc3829873.chain_1955	4	STRG.5769.2,blat.proc3829873.chain_1952	2
scaffold_5	starts_in_intron	10801343	10801343	+	asmbl_44360,asmbl_44362	none	STRG.6347.2,blat.proc3829873.chain_2486,blat.proc3829873.chain_2487	3	STRG.6347.1,blat.proc3829873.chain_2488	2
scaffold_9	retained_intron	16654233	16654417	-	asmbl_55562,asmbl_55568	none	STRG.11803.3,Trinity_GG_23555_c0_g1_i3,blat.proc3829893.chain_214	3	STRG.11803.1,STRG.11803.2,STRG.11803.4,blat.proc3829893.chain_209,blat.proc3829893.chain_210,blat.proc3829893.chain_211,blat.proc3829893.chain_212,blat.proc3829893.chain_213	8
scaffold_17	starts_in_intron	3997677	3997677	+	asmbl_17886	none	STRG.20145.3	1	STRG.20145.1,STRG.20145.2,blat.proc3829881.chain_988	3
scaffold_2	ends_in_intron	7406664	7406664	-	asmbl_23280,asmbl_23281,asmbl_23282	none	STRG.2065.3,STRG.2065.4,blat.proc3829887.chain_1875,blat.proc3829887.chain_1876,blat.proc3829887.chain_1877	5	STRG.2065.1,Trinity_GG_18123_c0_g1_i2,blat.proc3829887.chain_1879	3
scaffold_3	retained_intron	14844379	14844569	+	asmbl_40517	none	STRG.3834.2	1	STRG.3834.1,blat.proc3829873.chain_187	2
scaffold_15	alternate_exon	3401225	3401677	-	asmbl_15107	none	STRG.18107.3	1	blat.proc3829895.chain_2869	1
scaffold_9	alternate_exon	10847755	10847862	-	asmbl_55227	none	STRG.11383.2	1	STRG.11383.1,blat.proc3829891.chain_3527	2
scaffold_13	alt_donor	13559189	13559190	+	asmbl_11373	none	STRG.16395.1	1	STRG.16395.2	1
scaffold_9	ends_in_intron	16558033	16558033	-	asmbl_55546	none	STRG.11797.6,Trinity_GG_23481_c0_g1_i1,blat.proc3829893.chain_81	3	STRG.11797.1,STRG.11797.2,STRG.11797.3,STRG.11797.4,STRG.11797.5,Trinity_GG_23481_c0_g3_i5,Trinity_GG_23481_c0_g3_i6,blat.proc3829893.chain_85,blat.proc3829893.chain_88	9
scaffold_1	spliced_intron	7097403	7097526	+	asmbl_1876	none	STRG.502.1,blat.proc3829871.chain_528	2	blat.proc3829871.chain_527	1
scaffold_11	skipped_exon	3497550	3498550	+	asmbl_5400	none	STRG.13472.4	1	STRG.13472.2,blat.proc3829877.chain_1902	2
scaffold_2	alternate_exon	3331777	3331841	-	asmbl_22995	none	STRG.1763.2	1	STRG.1763.1,blat.proc3829887.chain_1576	2
scaffold_3	alternate_exon	15575390	15575685	+	asmbl_40531,asmbl_40532,asmbl_40533	none	STRG.3845.1,blat.proc3829873.chain_217,blat.proc3829873.chain_218,blat.proc3829873.chain_219	4	STRG.3845.3,STRG.3845.4,blat.proc3829873.chain_216	3
scaffold_12	retained_intron	4784663	4785218	-	asmbl_7585,asmbl_7587	none	STRG.14646.5,blat.proc3829893.chain_3021	2	STRG.14646.1,blat.proc3829893.chain_3022,blat.proc3829893.chain_3023	3
scaffold_16	alt_acceptor	4910195	4910196	-	asmbl_16257	none	STRG.19258.3	1	STRG.19258.1,STRG.19258.2,Trinity_GG_27837_c0_g1_i3,blat.proc3829897.chain_313	4
scaffold_16	alternate_exon	4064783	4064961	-	asmbl_16218	none	STRG.19211.1,blat.proc3829897.chain_229	2	STRG.19211.2,blat.proc3829897.chain_228	2
scaffold_7	alt_donor	5923067	5923068	+	asmbl_50711	none	STRG.8889.1,Trinity_GG_4857_c0_g1_i1,blat.proc3829875.chain_1247	3	STRG.8889.2	1
scaffold_10	alt_donor	9555421	9555422	+	asmbl_4676,asmbl_4681	none	STRG.12692.2,STRG.12692.4,blat.proc3829877.chain_1283	3	STRG.12692.1	1
scaffold_13	spliced_intron	517905	519724	+	asmbl_10453	none	Trinity_GG_8491_c0_g1_i2,blat.proc3829879.chain_113	2	STRG.15434.1,blat.proc3829879.chain_114	2
scaffold_6	retained_intron	13574733	13575353	-	asmbl_48854,asmbl_48855	none	Trinity_GG_21620_c1_g1_i1,Trinity_GG_21620_c1_g1_i4,blat.proc3829891.chain_415,blat.proc3829891.chain_416	4	STRG.8093.2,STRG.8093.3,STRG.8093.4,blat.proc3829891.chain_414	4
scaffold_9	ends_in_intron	4199448	4199448	+	asmbl_53920	none	STRG.11011.2	1	STRG.11011.1,blat.proc3829875.chain_3476,blat.proc3829875.chain_3477	3
scaffold_13	retained_intron	2274959	2277261	-	asmbl_9400,asmbl_9403,asmbl_9404,asmbl_9405	none	STRG.15533.2,blat.proc3829895.chain_308,blat.proc3829895.chain_310,blat.proc3829895.chain_311,blat.proc3829895.chain_317	5	STRG.15533.1,blat.proc3829895.chain_316	2
scaffold_8	alternate_exon	1127366	1134554	+	asmbl_51675	none	STRG.9742.1	1	STRG.9742.2	1
scaffold_21	spliced_intron	233295	233468	-	asmbl_27308	none	STRG.23713.1,Trinity_GG_30226_c0_g1_i2,blat.proc3829899.chain_760	3	Trinity_GG_30226_c0_g1_i1,blat.proc3829899.chain_759	2
scaffold_19	alt_acceptor	13155009	13155010	-	asmbl_21822	none	STRG.22626.1,blat.proc3829897.chain_3409	2	STRG.22626.2,blat.proc3829897.chain_3408,blat.proc3829897.chain_3410	3
scaffold_17	alt_donor	7855544	7855545	-	asmbl_19103	none	STRG.20401.2	1	STRG.20401.1,Trinity_GG_28487_c0_g1_i1,blat.proc3829897.chain_1365	3
scaffold_4	starts_in_intron	13821022	13821022	+	asmbl_43161	none	Trinity_GG_2804_c0_g1_i2,blat.proc3829873.chain_1356	2	STRG.5008.1,Trinity_GG_2804_c0_g1_i1,blat.proc3829873.chain_1358,blat.proc3829873.chain_1359	4
scaffold_27	retained_exon	3024865	3024965	+	asmbl_36131	none	blat.proc3829885.chain_1779	1	STRG.28769.1,STRG.28769.2,blat.proc3829885.chain_1782	3
scaffold_24	retained_exon	4280659	4280795	+	asmbl_32191,asmbl_32192	none	STRG.26568.2,STRG.26568.3,blat.proc3829883.chain_3465	3	STRG.26568.1,blat.proc3829883.chain_3466	2
scaffold_14	starts_in_intron	12332830	12332830	+	asmbl_12404	none	blat.proc3829879.chain_2222	1	STRG.17545.1,Trinity_GG_9637_c0_g1_i1,blat.proc3829879.chain_2223	3
scaffold_15	alternate_exon	12030213	12032194	+	asmbl_14458	none	STRG.18636.3,Trinity_GG_10227_c0_g1_i4,blat.proc3829879.chain_3225	3	STRG.18636.1,Trinity_GG_10227_c0_g1_i1,Trinity_GG_10227_c0_g1_i3,blat.proc3829879.chain_3227,blat.proc3829879.chain_3228	5
scaffold_13	skipped_exon	6291694	6294471	+	asmbl_10901,asmbl_10906	none	STRG.15910.1,blat.proc3829879.chain_559,blat.proc3829879.chain_562	3	STRG.15910.2,blat.proc3829879.chain_560,blat.proc3829879.chain_561	3
scaffold_2	alt_acceptor	18341917	18341918	+	asmbl_25260	none	STRG.2709.2	1	STRG.2709.3	1
scaffold_5	alternate_exon	13825489	13825595	-	asmbl_45949	none	STRG.6589.1	1	STRG.6589.2	1
scaffold_16	alt_acceptor	8579454	8579455	+	asmbl_17205	none	STRG.19476.1,blat.proc3829881.chain_350	2	STRG.19476.2,blat.proc3829881.chain_351	2
scaffold_23	ends_in_intron	358673	358673	-	asmbl_31313,asmbl_31314,asmbl_31315	none	STRG.25543.3,STRG.25543.4,STRG.25543.5	3	STRG.25543.1,blat.proc3829899.chain_2649,blat.proc3829899.chain_2650,blat.proc3829899.chain_2652,blat.proc3829899.chain_2653,blat.proc3829899.chain_2655,blat.proc3829899.chain_2656	7
scaffold_7	alt_donor	11413023	11413024	+	asmbl_51052	none	STRG.9275.1,Trinity_GG_5112_c0_g1_i4,blat.proc3829875.chain_1662,blat.proc3829875.chain_1664	4	STRG.9275.2,blat.proc3829875.chain_1665	2
scaffold_24	spliced_intron	10423260	10423576	+	asmbl_32560	none	STRG.26986.1,blat.proc3829885.chain_119	2	Trinity_GG_14914_c0_g1_i1,blat.proc3829885.chain_118	2
scaffold_22	alt_donor	6130481	6130482	+	asmbl_29396	none	blat.proc3829883.chain_2010	1	STRG.24955.3,blat.proc3829883.chain_2009	2
scaffold_21	alternate_exon	403834	404475	-	asmbl_27337	none	STRG.23724.2	1	Trinity_GG_30225_c0_g1_i7,blat.proc3829899.chain_754	2
scaffold_21	alt_acceptor	11299860	11299861	-	asmbl_28145	none	STRG.24589.1,blat.proc3829899.chain_1747	2	STRG.24589.2	1
scaffold_2	retained_intron	15270688	15270822	+	asmbl_25040,asmbl_25045	none	blat.proc3829871.chain_2526,blat.proc3829871.chain_2527	2	STRG.2481.1,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2536,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	7
scaffold_3	starts_in_intron	1765383	1765383	+	asmbl_39832	none	Trinity_GG_1694_c0_g2_i1,blat.proc3829871.chain_3165	2	STRG.2990.1	1
scaffold_2	retained_exon	19025541	19025614	-	asmbl_23861	none	blat.proc3829887.chain_2612	1	blat.proc3829887.chain_2613	1
scaffold_20	alternate_exon	1134460	1138915	-	asmbl_26477	none	STRG.22816.2,Trinity_GG_29728_c0_g1_i1,blat.proc3829897.chain_3547,blat.proc3829897.chain_3573	4	STRG.22816.1	1
scaffold_7	spliced_intron	18392948	18393030	-	asmbl_50290,asmbl_50298	none	STRG.9659.5,Trinity_GG_22427_c0_g1_i15,blat.proc3829891.chain_1874	3	Trinity_GG_22427_c0_g1_i8,blat.proc3829891.chain_1872	2
scaffold_2	alternate_exon	18772685	18772775	+	asmbl_25283	none	STRG.2754.2	1	STRG.2754.1	1
scaffold_3	retained_intron	17535333	17535434	-	asmbl_39517,asmbl_39520	none	STRG.3987.4,blat.proc3829889.chain_90,blat.proc3829889.chain_91	3	STRG.3987.1,STRG.3987.2,STRG.3987.3,blat.proc3829889.chain_89,blat.proc3829889.chain_92	5
scaffold_18	alt_acceptor	6000964	6000965	+	asmbl_20686	none	STRG.21346.5,blat.proc3829881.chain_2198	2	blat.proc3829881.chain_2196	1
scaffold_12	spliced_intron	14173452	14174310	+	asmbl_9034	none	blat.proc3829877.chain_3704	1	STRG.15236.1,STRG.15236.2,STRG.15236.3,Trinity_GG_8405_c0_g1_i9,blat.proc3829877.chain_3705,blat.proc3829877.chain_3706,blat.proc3829877.chain_3708	7
scaffold_5	spliced_intron	420596	420639	-	asmbl_45169	none	blat.proc3829889.chain_1663	1	STRG.5608.1	1
scaffold_19	retained_exon	12107239	12107337	-	asmbl_21668,asmbl_21669	none	STRG.22526.1,STRG.22526.4,blat.proc3829897.chain_3209,blat.proc3829897.chain_3211	4	STRG.22526.3	1
scaffold_4	retained_intron	4911794	4911995	+	asmbl_42644,asmbl_42646	none	Trinity_GG_2443_c0_g1_i3,blat.proc3829873.chain_777,blat.proc3829873.chain_779	3	STRG.4386.1,STRG.4386.2,STRG.4386.3,blat.proc3829873.chain_780	4
scaffold_3	spliced_intron	6046201	6046335	-	asmbl_38837	none	STRG.3255.7	1	STRG.3255.1,STRG.3255.2,STRG.3255.5	3
scaffold_5	alt_donor	6278291	6278292	-	asmbl_45474	none	STRG.6029.1,blat.proc3829889.chain_2102	2	STRG.6029.2	1
scaffold_21	spliced_intron	3120017	3120306	+	asmbl_28470	none	STRG.23929.2	1	STRG.23929.1,STRG.23929.3,STRG.23929.4,Trinity_GG_13266_c1_g1_i1,blat.proc3829883.chain_1098,blat.proc3829883.chain_1100,blat.proc3829883.chain_1101	7
scaffold_7	alternate_exon	1524145	1524239	-	asmbl_49558	none	STRG.8640.1	1	STRG.8640.2,Trinity_GG_21948_c0_g1_i2,blat.proc3829891.chain_1007	3
scaffold_11	retained_intron	8330044	8330165	-	asmbl_6839	none	STRG.13832.1,Trinity_GG_24759_c0_g1_i2,blat.proc3829893.chain_2296	3	STRG.13832.2,Trinity_GG_24759_c0_g1_i1,blat.proc3829893.chain_2295	3
scaffold_15	starts_in_intron	8166671	8166671	+	asmbl_14266	none	Trinity_GG_10090_c0_g1_i4,blat.proc3829879.chain_3008	2	STRG.18377.1,STRG.18377.2,blat.proc3829879.chain_3007,blat.proc3829879.chain_3009,blat.proc3829879.chain_3010	5
scaffold_20	starts_in_intron	11943096	11943096	-	asmbl_27130	none	Trinity_GG_30192_c0_g2_i2,blat.proc3829899.chain_683	2	STRG.23682.1,STRG.23682.2,blat.proc3829899.chain_680,blat.proc3829899.chain_681,blat.proc3829899.chain_682	5
scaffold_21	alt_acceptor	4126164	4126165	+	asmbl_28532	none	STRG.23976.1	1	STRG.23976.2	1
scaffold_14	retained_intron	7298482	7298744	+	asmbl_12127,asmbl_12129	none	STRG.17153.3,blat.proc3829879.chain_1852	2	blat.proc3829879.chain_1856	1
scaffold_26	alt_donor	10097582	10097583	-	asmbl_35083	none	STRG.28512.2	1	STRG.28512.1,blat.proc3829901.chain_1638	2
scaffold_4	retained_intron	10588124	10588890	-	asmbl_41600	none	Trinity_GG_19688_c0_g1_i1,blat.proc3829889.chain_867	2	STRG.4796.1,Trinity_GG_19688_c0_g1_i2,blat.proc3829889.chain_866	3
scaffold_13	skipped_exon	1524599	1526885	-	asmbl_9376,asmbl_9380	none	STRG.15500.1,STRG.15500.3,Trinity_GG_25702_c0_g1_i5,blat.proc3829895.chain_260	4	STRG.15500.2,Trinity_GG_25702_c0_g1_i1,blat.proc3829895.chain_262	3
scaffold_1	starts_in_intron	8632646	8632646	-	asmbl_468	none	blat.proc3829887.chain_446	1	STRG.568.1,STRG.568.2,blat.proc3829887.chain_447,blat.proc3829887.chain_448,blat.proc3829887.chain_449	5
scaffold_13	ends_in_intron	6430825	6430825	+	asmbl_10921	none	STRG.15921.2	1	STRG.15921.1	1
scaffold_1	alternate_exon	12166139	12166599	+	asmbl_2167,asmbl_2170	none	blat.proc3829871.chain_919,blat.proc3829871.chain_920	2	STRG.845.2	1
scaffold_15	alt_donor	4983129	4983130	-	asmbl_15190	none	blat.proc3829895.chain_2987	1	STRG.18197.1,STRG.18197.3,blat.proc3829895.chain_2985,blat.proc3829895.chain_2986	4
scaffold_6	spliced_intron	8172579	8172828	-	asmbl_48476,asmbl_48479,asmbl_48480,asmbl_48481	none	STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3715,blat.proc3829889.chain_3716,blat.proc3829889.chain_3724	5	Trinity_GG_21366_c0_g1_i13,Trinity_GG_21366_c0_g1_i6,blat.proc3829889.chain_3718,blat.proc3829889.chain_3720,blat.proc3829889.chain_3721,blat.proc3829889.chain_3723	6
scaffold_11	alt_acceptor	6139756	6139757	-	asmbl_6675	none	STRG.13667.1,blat.proc3829893.chain_2099	2	blat.proc3829893.chain_2100	1
scaffold_11	retained_intron	14119106	14119141	-	asmbl_7135	none	STRG.14222.1	1	blat.proc3829893.chain_2611,blat.proc3829893.chain_2613	2
scaffold_20	starts_in_intron	12070186	12070186	-	asmbl_27139	none	Trinity_GG_30191_c0_g1_i3,blat.proc3829899.chain_677	2	STRG.23685.1,Trinity_GG_30191_c0_g1_i2,blat.proc3829899.chain_676	3
scaffold_13	starts_in_intron	364635	364635	-	asmbl_9283	none	Trinity_GG_25666_c0_g1_i6,blat.proc3829895.chain_159	2	STRG.15426.1,STRG.15426.3,STRG.15426.4,STRG.15426.5,Trinity_GG_25666_c0_g1_i1,Trinity_GG_25666_c0_g1_i10,Trinity_GG_25666_c0_g1_i11,Trinity_GG_25666_c0_g1_i3,blat.proc3829895.chain_155,blat.proc3829895.chain_156,blat.proc3829895.chain_162,blat.proc3829895.chain_165	12
scaffold_8	retained_intron	8970965	8971067	-	asmbl_52977,asmbl_52980	none	STRG.10140.1,blat.proc3829891.chain_2311,blat.proc3829891.chain_2312	3	STRG.10140.2,blat.proc3829891.chain_2309	2
scaffold_5	starts_in_intron	10804720	10804720	+	asmbl_44363	none	blat.proc3829873.chain_2490	1	STRG.6347.1,STRG.6347.2,blat.proc3829873.chain_2486,blat.proc3829873.chain_2487	4
scaffold_2	starts_in_intron	703329	703329	-	asmbl_22844	none	blat.proc3829887.chain_1390	1	STRG.1544.1	1
scaffold_26	alternate_exon	1321803	1322126	-	asmbl_34678	none	blat.proc3829901.chain_1142	1	STRG.27898.1	1
scaffold_19	alt_acceptor	724687	724688	+	asmbl_22005,asmbl_22006,asmbl_22007	none	STRG.21851.1,STRG.21851.2,STRG.21851.4	3	STRG.21851.3	1
scaffold_500	alt_donor	1334	1335	+	asmbl_46443,asmbl_46444,asmbl_46446,asmbl_46448,asmbl_46449,asmbl_46450	none	STRG.30347.1,STRG.30347.2,STRG.30347.3,STRG.30347.4,blat.proc3829885.chain_3366,blat.proc3829885.chain_3369	6	blat.proc3829885.chain_3368	1
scaffold_17	retained_intron	651449	651532	+	asmbl_17683	none	STRG.19898.2,Trinity_GG_10900_c0_g1_i1,blat.proc3829881.chain_735	3	STRG.19898.1,Trinity_GG_10900_c0_g1_i2,blat.proc3829881.chain_734	3
scaffold_6	ends_in_intron	14118226	14118226	+	asmbl_47517	none	STRG.8168.2,blat.proc3829875.chain_557	2	STRG.8168.1,blat.proc3829875.chain_556	2
scaffold_2	retained_intron	10725827	10726142	+	asmbl_24766,asmbl_24767	none	STRG.2241.2,blat.proc3829871.chain_2347	2	STRG.2241.1,blat.proc3829871.chain_2348	2
scaffold_15	alt_acceptor	15856432	15856433	+	asmbl_14779,asmbl_14780	none	blat.proc3829879.chain_3543,blat.proc3829879.chain_3545	2	STRG.18964.1,STRG.18964.3,STRG.18964.5,Trinity_GG_10383_c0_g1_i7,blat.proc3829879.chain_3538,blat.proc3829879.chain_3540	6
scaffold_2	alt_donor	16292157	16292158	+	asmbl_25145	none	STRG.2561.2,blat.proc3829871.chain_2768	2	STRG.2561.1,blat.proc3829871.chain_2769	2
scaffold_10	ends_in_intron	3731732	3731732	+	asmbl_4344	none	STRG.12193.3,blat.proc3829877.chain_870	2	STRG.12193.1,STRG.12193.2,blat.proc3829877.chain_869,blat.proc3829877.chain_871,blat.proc3829877.chain_872	5
scaffold_3	retained_intron	17362094	17362259	-	asmbl_39493,asmbl_39495,asmbl_39496,asmbl_39498,asmbl_39499,asmbl_39502,asmbl_39503	none	STRG.3972.2,STRG.3972.3,STRG.3972.4,Trinity_GG_19202_c0_g1_i17,blat.proc3829889.chain_23,blat.proc3829889.chain_24,blat.proc3829889.chain_26,blat.proc3829889.chain_27,blat.proc3829889.chain_28	9	blat.proc3829889.chain_29	1
scaffold_12	retained_exon	15678771	15678893	-	asmbl_8232,asmbl_8233	none	STRG.15344.1,STRG.15344.2,blat.proc3829895.chain_20,blat.proc3829895.chain_22	4	STRG.15344.3,blat.proc3829895.chain_19	2
scaffold_10	ends_in_intron	11970234	11970234	+	asmbl_4788	none	Trinity_GG_7032_c0_g1_i13,blat.proc3829877.chain_1318	2	STRG.12831.1,STRG.12831.3,blat.proc3829877.chain_1313,blat.proc3829877.chain_1317,blat.proc3829877.chain_1319,blat.proc3829877.chain_1321,blat.proc3829877.chain_1322	7
scaffold_13	alt_acceptor	16129918	16129919	-	asmbl_10236	none	STRG.16639.2,blat.proc3829895.chain_1330	2	STRG.16639.1,blat.proc3829895.chain_1331	2
scaffold_17	alt_donor	1732743	1732744	-	asmbl_18775	none	STRG.19997.1,blat.proc3829897.chain_970	2	STRG.19997.2,blat.proc3829897.chain_971	2
scaffold_10	alt_donor	1629443	1629444	-	asmbl_2987	none	STRG.12019.2	1	STRG.12019.1,blat.proc3829893.chain_456,blat.proc3829893.chain_459	3
scaffold_1	spliced_intron	6299428	6299676	-	asmbl_359	none	STRG.424.4	1	STRG.424.3	1
scaffold_14	ends_in_intron	10693067	10693067	+	asmbl_12319	none	blat.proc3829879.chain_2115	1	STRG.17404.2,STRG.17404.3,Trinity_GG_9574_c0_g1_i1,blat.proc3829879.chain_2114	4
scaffold_4	spliced_intron	17580692	17580979	+	asmbl_43401,asmbl_43404	none	STRG.5347.1,STRG.5347.3	2	STRG.5347.4,STRG.5347.5	2
scaffold_2	alternate_exon	9866618	9869089	-	asmbl_23412	none	STRG.2192.1,blat.proc3829887.chain_2063,blat.proc3829887.chain_2065	3	STRG.2192.2	1
scaffold_23	spliced_intron	10330988	10331059	+	asmbl_31144	none	Trinity_GG_14478_c0_g1_i1	1	STRG.26228.2,STRG.26228.3	2
scaffold_7	alternate_exon	17736285	17736348	+	asmbl_51376	none	STRG.9609.2	1	STRG.9609.1,blat.proc3829875.chain_2072,blat.proc3829875.chain_2074	3
scaffold_27	alt_donor	6250431	6250432	+	asmbl_36346	none	STRG.28994.1,blat.proc3829885.chain_2141	2	STRG.28994.2	1
scaffold_10	alt_donor	10831401	10831402	-	asmbl_3667	none	STRG.12762.2	1	STRG.12762.1,blat.proc3829893.chain_1270	2
scaffold_13	alternate_exon	8350938	8355997	+	asmbl_11110,asmbl_11113,asmbl_11114,asmbl_11116	none	STRG.16112.1,STRG.16112.2,STRG.16112.3,blat.proc3829879.chain_891,blat.proc3829879.chain_892	5	STRG.16112.4	1
scaffold_4	alt_acceptor	13184671	13184672	-	asmbl_41726	none	STRG.4963.1,blat.proc3829889.chain_1036	2	STRG.4963.3,blat.proc3829889.chain_1038	2
scaffold_7	alt_acceptor	1461351	1461352	-	asmbl_49551	none	STRG.8637.1,blat.proc3829891.chain_1024	2	STRG.8637.2	1
scaffold_11	spliced_intron	2500321	2500474	-	asmbl_6488	none	STRG.13391.1,blat.proc3829893.chain_1888	2	Trinity_GG_24528_c0_g1_i1,blat.proc3829893.chain_1887	2
scaffold_15	skipped_exon	345797	347489	+	asmbl_13901	none	STRG.17869.2	1	STRG.17869.1,blat.proc3829879.chain_2553	2
scaffold_20	retained_exon	1618621	1619133	-	asmbl_26519	none	STRG.22881.1	1	STRG.22881.3	1
scaffold_13	ends_in_intron	6104664	6104664	+	asmbl_10895	none	STRG.15899.2,Trinity_GG_8735_c0_g1_i2,blat.proc3829879.chain_584	3	STRG.15899.1,Trinity_GG_8735_c0_g1_i3,blat.proc3829879.chain_583	3
scaffold_17	spliced_intron	8210415	8210511	-	asmbl_19123	none	STRG.20431.2,blat.proc3829897.chain_1409	2	blat.proc3829897.chain_1410	1
scaffold_18	spliced_intron	7686792	7686884	+	asmbl_20807,asmbl_20809	none	STRG.21464.3,blat.proc3829881.chain_2440	2	STRG.21464.2,STRG.21464.4,Trinity_GG_11863_c0_g1_i9,blat.proc3829881.chain_2433,blat.proc3829881.chain_2434,blat.proc3829881.chain_2435,blat.proc3829881.chain_2436	7
scaffold_26	retained_intron	9082921	9083032	-	asmbl_35034	none	STRG.28453.4,Trinity_GG_32915_c0_g1_i1,blat.proc3829901.chain_1597	3	STRG.28453.1,STRG.28453.2,STRG.28453.3,blat.proc3829901.chain_1595,blat.proc3829901.chain_1596,blat.proc3829901.chain_1598	6
scaffold_15	retained_exon	15448667	15449028	+	asmbl_14744,asmbl_14746,asmbl_14747	none	STRG.18933.1,STRG.18933.2,Trinity_GG_10389_c0_g1_i7,blat.proc3829879.chain_3564,blat.proc3829879.chain_3565	5	Trinity_GG_10389_c0_g1_i2,blat.proc3829879.chain_3560	2
scaffold_14	spliced_intron	10717597	10717700	+	asmbl_12324,asmbl_12326	none	STRG.17408.1,STRG.17408.2,Trinity_GG_9575_c0_g1_i2,blat.proc3829879.chain_2118	4	Trinity_GG_9575_c0_g1_i1,blat.proc3829879.chain_2119	2
scaffold_7	retained_exon	12083011	12083095	+	asmbl_51099	none	STRG.9310.2	1	STRG.9310.3	1
scaffold_28	spliced_intron	4255778	4255887	-	asmbl_37524	none	STRG.29599.1,blat.proc3829901.chain_2716	2	blat.proc3829901.chain_2715	1
scaffold_4	ends_in_intron	19613984	19613984	-	asmbl_42229	none	Trinity_GG_20142_c0_g2_i1	1	STRG.5554.2	1
scaffold_10	ends_in_intron	8328578	8328578	-	asmbl_3495	none	STRG.12584.2	1	STRG.12584.1	1
scaffold_3	spliced_intron	14774473	14774932	-	asmbl_39371	none	STRG.3820.1,blat.proc3829887.chain_3625	2	STRG.3820.2,blat.proc3829887.chain_3623	2
scaffold_6	retained_exon	885617	885681	-	asmbl_48032	none	STRG.7153.1	1	STRG.7153.2	1
scaffold_6	alt_acceptor	6026259	6026260	+	asmbl_46927	none	STRG.7547.3	1	STRG.7547.1,STRG.7547.2,blat.proc3829873.chain_3639	3
scaffold_18	spliced_intron	1887392	1887983	-	asmbl_19694,asmbl_19696,asmbl_19698,asmbl_19703	none	STRG.21072.1,blat.proc3829897.chain_1890,blat.proc3829897.chain_1895,blat.proc3829897.chain_1897	4	STRG.21072.5,Trinity_GG_28789_c1_g1_i1,blat.proc3829897.chain_1905	3
scaffold_7	alt_acceptor	8173612	8173613	+	asmbl_50844	none	STRG.9039.1,blat.proc3829875.chain_1470	2	STRG.9039.3,Trinity_GG_5002_c0_g2_i2,blat.proc3829875.chain_1469	3
scaffold_7	alternate_exon	8612646	8613291	+	asmbl_50914	none	STRG.9089.1,blat.proc3829875.chain_1503	2	STRG.9089.2,blat.proc3829875.chain_1501	2
scaffold_26	retained_intron	3361212	3361377	+	asmbl_35306	none	blat.proc3829885.chain_899	1	STRG.28006.2,blat.proc3829885.chain_898	2
scaffold_16	retained_intron	318642	318842	+	asmbl_16814	none	blat.proc3829879.chain_3633	1	STRG.19010.2,blat.proc3829879.chain_3632	2
scaffold_15	alternate_exon	15347372	15347712	+	asmbl_14701	none	STRG.18908.4,Trinity_GG_10364_c0_g1_i1,blat.proc3829879.chain_3494	3	STRG.18908.1	1
scaffold_4	alternate_exon	1318589	1318713	-	asmbl_41106	none	STRG.4170.1,blat.proc3829889.chain_288	2	STRG.4170.2	1
scaffold_6	ends_in_intron	7292156	7292156	+	asmbl_46998	none	blat.proc3829873.chain_3745	1	STRG.7630.1	1
scaffold_16	retained_exon	9625470	9625484	-	asmbl_16468	none	STRG.19561.1,blat.proc3829897.chain_575	2	STRG.19561.2,blat.proc3829897.chain_576	2
scaffold_2	starts_in_intron	14560537	14560537	+	asmbl_24983	none	STRG.2454.5	1	STRG.2454.1,STRG.2454.2,STRG.2454.3,STRG.2454.4,blat.proc3829871.chain_2565,blat.proc3829871.chain_2570	6
scaffold_4	alternate_exon	16576852	16577618	+	asmbl_43316	none	STRG.5238.3	1	STRG.5238.1,blat.proc3829873.chain_1499,blat.proc3829873.chain_1500	3
scaffold_4	alt_acceptor	7991152	7991153	+	asmbl_42860	none	STRG.4620.3	1	STRG.4620.2,blat.proc3829873.chain_914	2
scaffold_19	alt_acceptor	13264412	13264413	-	asmbl_21851,asmbl_21854	none	STRG.22635.2,blat.proc3829897.chain_3422	2	STRG.22635.1,Trinity_GG_29623_c0_g1_i4,blat.proc3829897.chain_3421	3
scaffold_3	retained_intron	17364750	17365193	-	asmbl_39494,asmbl_39498	none	blat.proc3829889.chain_22,blat.proc3829889.chain_27	2	STRG.3972.1,blat.proc3829889.chain_23,blat.proc3829889.chain_29,blat.proc3829889.chain_30	4
scaffold_15	skipped_exon	15345818	15347791	+	asmbl_14704	none	STRG.18908.1	1	STRG.18908.2	1
scaffold_16	alt_donor	6096685	6096686	-	asmbl_16313,asmbl_16315	none	STRG.19329.2,blat.proc3829897.chain_383	2	STRG.19329.1,blat.proc3829897.chain_379,blat.proc3829897.chain_380,blat.proc3829897.chain_382,blat.proc3829897.chain_384	5
scaffold_9	spliced_intron	8396407	8396490	+	asmbl_54155,asmbl_54156,asmbl_54157,asmbl_54158,asmbl_54160,asmbl_54161	none	STRG.11249.1,STRG.11249.2,STRG.11249.3,STRG.11249.4,STRG.11249.5,blat.proc3829877.chain_17,blat.proc3829877.chain_18,blat.proc3829877.chain_19,blat.proc3829877.chain_21	9	Trinity_GG_6284_c0_g1_i2,blat.proc3829877.chain_16	2
scaffold_12	alt_acceptor	14174309	14174310	+	asmbl_9034	none	blat.proc3829877.chain_3704	1	STRG.15236.3,blat.proc3829877.chain_3707	2
scaffold_12	starts_in_intron	13109019	13109019	-	asmbl_8048	none	Trinity_GG_25499_c0_g1_i2,blat.proc3829893.chain_3595	2	STRG.15185.1,STRG.15185.2,Trinity_GG_25499_c0_g1_i3,blat.proc3829893.chain_3594,blat.proc3829893.chain_3596	5
scaffold_2	ends_in_intron	13398873	13398873	+	asmbl_24873,asmbl_24878	none	blat.proc3829871.chain_2408,blat.proc3829871.chain_2410	2	STRG.2357.3,Trinity_GG_1292_c0_g1_i5,blat.proc3829871.chain_2406,blat.proc3829871.chain_2409	4
scaffold_16	retained_exon	433713	433762	-	asmbl_16047	none	blat.proc3829897.chain_20	1	STRG.19039.1,blat.proc3829897.chain_21,blat.proc3829897.chain_26	3
scaffold_3	alt_donor	6832383	6832384	+	asmbl_40098	none	STRG.3303.1	1	STRG.3303.2,blat.proc3829871.chain_3485,blat.proc3829871.chain_3486	3
scaffold_2	skipped_exon	3632150	3633040	+	asmbl_24314	none	STRG.1787.2	1	STRG.1787.1,blat.proc3829871.chain_1793	2
scaffold_20	alternate_exon	9946420	9948617	+	asmbl_26067	none	STRG.23522.1,blat.proc3829883.chain_635	2	STRG.23522.2,blat.proc3829883.chain_634	2
scaffold_6	starts_in_intron	13070297	13070297	+	asmbl_47406	none	blat.proc3829875.chain_469	1	STRG.8057.1,blat.proc3829875.chain_470	2
scaffold_9	retained_intron	4160412	4160541	-	asmbl_54920	none	blat.proc3829891.chain_3183	1	STRG.11008.1,blat.proc3829891.chain_3182	2
scaffold_8	alternate_exon	14404971	14405536	-	asmbl_53318	none	blat.proc3829891.chain_2544	1	STRG.10520.2	1
scaffold_4	starts_in_intron	16340642	16340642	-	asmbl_41909	none	blat.proc3829889.chain_1179	1	STRG.5201.1	1
scaffold_21	spliced_intron	11346303	11346361	-	asmbl_28147,asmbl_28149	none	STRG.24599.2,STRG.24599.3	2	STRG.24599.1	1
scaffold_26	alt_acceptor	4690496	4690497	-	asmbl_34863	none	STRG.28179.3	1	STRG.28179.1,STRG.28179.2,blat.proc3829901.chain_1382,blat.proc3829901.chain_1383,blat.proc3829901.chain_1385	5
scaffold_21	alternate_exon	3124891	3125225	-	asmbl_27544	none	blat.proc3829899.chain_980	1	STRG.23930.3,STRG.23930.4,STRG.23930.5,Trinity_GG_30335_c0_g1_i6,blat.proc3829899.chain_977,blat.proc3829899.chain_978,blat.proc3829899.chain_979,blat.proc3829899.chain_981	8
scaffold_1	retained_intron	14354771	14354860	-	asmbl_904,asmbl_906,asmbl_907,asmbl_908	none	Trinity_GG_17550_c0_g1_i3,blat.proc3829887.chain_907,blat.proc3829887.chain_908,blat.proc3829887.chain_909,blat.proc3829887.chain_910	5	blat.proc3829887.chain_906	1
scaffold_17	alt_acceptor	13196206	13196207	-	asmbl_19408,asmbl_19411	none	STRG.20803.3,STRG.20803.4,blat.proc3829897.chain_1733	3	STRG.20803.1,STRG.20803.2,blat.proc3829897.chain_1734,blat.proc3829897.chain_1736,blat.proc3829897.chain_1737	5
scaffold_7	alt_donor	16823392	16823393	-	asmbl_50231,asmbl_50236	none	STRG.9585.1,STRG.9585.2,blat.proc3829891.chain_1829	3	blat.proc3829891.chain_1826,blat.proc3829891.chain_1828	2
scaffold_10	alt_acceptor	3129058	3129059	-	asmbl_3081	none	STRG.12130.1,Trinity_GG_23778_c0_g1_i3,blat.proc3829893.chain_594	3	STRG.12130.3	1
scaffold_2	starts_in_intron	1397010	1397010	+	asmbl_24219	none	Trinity_GG_941_c1_g2_i1,blat.proc3829871.chain_1736	2	STRG.1617.1,blat.proc3829871.chain_1735	2
scaffold_13	starts_in_intron	6047317	6047317	-	asmbl_9725	none	blat.proc3829895.chain_632	1	STRG.15900.4,blat.proc3829895.chain_629	2
scaffold_16	retained_intron	1237655	1237855	-	asmbl_16103	none	blat.proc3829897.chain_128	1	STRG.19075.1,blat.proc3829897.chain_126,blat.proc3829897.chain_127	3
scaffold_11	alternate_exon	10182318	10182362	+	asmbl_5891	none	STRG.14019.3	1	STRG.14019.1,STRG.14019.2,blat.proc3829877.chain_2496,blat.proc3829877.chain_2498	4
scaffold_1	alt_donor	5192247	5192248	-	asmbl_243	none	STRG.321.1,blat.proc3829887.chain_202	2	STRG.321.2	1
scaffold_8	ends_in_intron	4185834	4185834	+	asmbl_51802	none	blat.proc3829875.chain_2405	1	STRG.9886.1,blat.proc3829875.chain_2406,blat.proc3829875.chain_2408,blat.proc3829875.chain_2409	4
scaffold_3	alternate_exon	4522199	4523366	+	asmbl_39969	none	STRG.3146.1,blat.proc3829871.chain_3341	2	STRG.3146.2,blat.proc3829871.chain_3342	2
scaffold_340	alt_acceptor	3507	3508	+	asmbl_40963	none	blat.proc3829885.chain_3313	1	STRG.30267.1,STRG.30267.2	2
scaffold_2	retained_intron	885176	885305	+	asmbl_24143	none	blat.proc3829871.chain_1567	1	STRG.1563.2,STRG.1563.3,blat.proc3829871.chain_1566	3
scaffold_1	alt_donor	20138222	20138223	-	asmbl_1170,asmbl_1172,asmbl_1173,asmbl_1174	none	STRG.1381.1,STRG.1381.2,STRG.1381.4,STRG.1381.5	4	STRG.1381.3	1
scaffold_10	starts_in_intron	11969626	11969626	+	asmbl_4791	none	blat.proc3829877.chain_1313	1	STRG.12831.1,STRG.12831.3,Trinity_GG_7032_c0_g1_i14,blat.proc3829877.chain_1317,blat.proc3829877.chain_1319,blat.proc3829877.chain_1320,blat.proc3829877.chain_1321,blat.proc3829877.chain_1322	8
scaffold_27	ends_in_intron	974473	974473	+	asmbl_35934	none	Trinity_GG_15816_c0_g2_i1,blat.proc3829885.chain_1622	2	STRG.28576.1,STRG.28576.2,Trinity_GG_15816_c0_g1_i5,Trinity_GG_15816_c0_g1_i6,blat.proc3829885.chain_1616,blat.proc3829885.chain_1617	6
scaffold_8	retained_intron	3433549	3433602	+	asmbl_51751	none	STRG.9833.1,Trinity_GG_5467_c0_g1_i2,blat.proc3829875.chain_2311,blat.proc3829875.chain_2312	4	STRG.9833.2	1
scaffold_5	spliced_intron	4696426	4696551	+	asmbl_43954	none	STRG.5917.4	1	STRG.5917.1	1
scaffold_8	alt_acceptor	18424595	18424596	+	asmbl_52543	none	STRG.10731.2,Trinity_GG_5948_c0_g1_i2,blat.proc3829875.chain_3213	3	STRG.10731.1,Trinity_GG_5948_c0_g1_i3,blat.proc3829875.chain_3212	3
scaffold_2	ends_in_intron	10658049	10658049	-	asmbl_23451	none	Trinity_GG_18280_c0_g1_i1,blat.proc3829887.chain_2154	2	STRG.2228.1	1
scaffold_9	alternate_exon	17582033	17582103	-	asmbl_55620	none	STRG.11836.1	1	STRG.11836.2	1
scaffold_20	spliced_intron	4510126	4510257	-	asmbl_26665	none	STRG.23117.1,blat.proc3829899.chain_43	2	blat.proc3829899.chain_45	1
scaffold_26	alt_acceptor	4819718	4819719	+	asmbl_35453,asmbl_35455,asmbl_35456,asmbl_35457	none	STRG.28182.1,STRG.28182.2,blat.proc3829885.chain_1145,blat.proc3829885.chain_1146,blat.proc3829885.chain_1147	5	blat.proc3829885.chain_1144	1
scaffold_1	spliced_intron	12407161	12407709	+	asmbl_2192,asmbl_2193	none	STRG.851.1,STRG.851.2,Trinity_GG_482_c0_g1_i2,Trinity_GG_482_c0_g1_i3,Trinity_GG_482_c0_g1_i4,blat.proc3829871.chain_855,blat.proc3829871.chain_856,blat.proc3829871.chain_857	8	Trinity_GG_482_c0_g1_i1,blat.proc3829871.chain_854	2
scaffold_11	spliced_intron	262237	262334	-	asmbl_6363	none	STRG.13257.1,blat.proc3829893.chain_1720	2	blat.proc3829893.chain_1718,blat.proc3829893.chain_1719	2
scaffold_2	alt_donor	18307269	18307270	-	asmbl_23791	none	STRG.2713.2,blat.proc3829887.chain_2539	2	STRG.2713.3	1
scaffold_10	spliced_intron	10324675	10324702	-	asmbl_3629	none	blat.proc3829893.chain_1220	1	STRG.12713.1	1
scaffold_12	alt_acceptor	5512547	5512548	+	asmbl_8617,asmbl_8620	none	STRG.14689.1,STRG.14689.2,blat.proc3829877.chain_3173	3	STRG.14689.3,blat.proc3829877.chain_3174	2
scaffold_20	alt_acceptor	476082	476083	+	asmbl_25515	none	STRG.22737.2	1	STRG.22737.1	1
scaffold_17	ends_in_intron	3190302	3190302	+	asmbl_17833	none	Trinity_GG_11000_c0_g1_i2,blat.proc3829881.chain_910	2	STRG.20087.1	1
scaffold_2	alt_acceptor	15656428	15656429	-	asmbl_23663	none	STRG.2517.1	1	STRG.2517.2,blat.proc3829887.chain_2373	2
scaffold_2	starts_in_intron	3631783	3631783	+	asmbl_24315	none	blat.proc3829871.chain_1793	1	STRG.1787.1,STRG.1787.2,STRG.1787.3,Trinity_GG_982_c0_g1_i6	4
scaffold_17	retained_intron	8848586	8849302	+	asmbl_18155	none	STRG.20482.1,Trinity_GG_11229_c0_g1_i2	2	STRG.20482.2	1
scaffold_18	alt_acceptor	7875029	7875030	+	asmbl_20835,asmbl_20836,asmbl_20837,asmbl_20840	none	STRG.21481.1,STRG.21481.2,STRG.21481.4,blat.proc3829881.chain_2401,blat.proc3829881.chain_2402,blat.proc3829881.chain_2403	6	STRG.21481.3,blat.proc3829881.chain_2404	2
scaffold_8	alt_donor	9374360	9374361	-	asmbl_53021,asmbl_53022,asmbl_53026,asmbl_53027	none	STRG.10194.5,STRG.10194.6,blat.proc3829891.chain_2355,blat.proc3829891.chain_2356	4	STRG.10194.3,STRG.10194.4,blat.proc3829891.chain_2358	3
scaffold_8	alt_acceptor	18085010	18085011	-	asmbl_53512,asmbl_53513,asmbl_53516	none	STRG.10701.3,Trinity_GG_22907_c0_g1_i1,Trinity_GG_22907_c0_g1_i4,blat.proc3829891.chain_2753,blat.proc3829891.chain_2755	5	STRG.10701.1,STRG.10701.2,Trinity_GG_22907_c0_g1_i2,Trinity_GG_22907_c0_g1_i6,blat.proc3829891.chain_2754,blat.proc3829891.chain_2756	6
scaffold_16	alt_acceptor	8144289	8144290	+	asmbl_17180	none	STRG.19444.1,blat.proc3829881.chain_247	2	STRG.19444.2	1
scaffold_12	starts_in_intron	3797435	3797435	-	asmbl_7505	none	blat.proc3829893.chain_2880	1	STRG.14571.1,blat.proc3829893.chain_2879	2
scaffold_13	retained_exon	8909678	8909835	+	asmbl_11140	none	STRG.16150.2,Trinity_GG_8845_c0_g1_i3,blat.proc3829879.chain_826	3	STRG.16150.1,blat.proc3829879.chain_825	2
scaffold_4	alt_acceptor	12341914	12341915	-	asmbl_41644,asmbl_41645	none	STRG.4867.1,blat.proc3829889.chain_933	2	STRG.4867.2,blat.proc3829889.chain_934	2
scaffold_15	skipped_exon	9641313	9641824	-	asmbl_15411	none	blat.proc3829895.chain_3177	1	blat.proc3829895.chain_3178,blat.proc3829895.chain_3185	2
scaffold_14	alt_donor	7497725	7497726	+	asmbl_12146	none	STRG.17177.1	1	STRG.17177.2,STRG.17177.3,STRG.17177.4,blat.proc3829879.chain_1834	4
scaffold_10	retained_intron	13458298	13458388	-	asmbl_3784	none	STRG.12925.2,blat.proc3829893.chain_1409	2	STRG.12925.1,blat.proc3829893.chain_1410	2
scaffold_19	ends_in_intron	6182734	6182734	-	asmbl_21404	none	Trinity_GG_29333_c0_g1_i2,blat.proc3829897.chain_2838	2	STRG.22133.1,Trinity_GG_29333_c0_g1_i1,blat.proc3829897.chain_2837	3
scaffold_23	retained_intron	7686045	7686483	+	asmbl_31012	none	Trinity_GG_14406_c0_g1_i5,blat.proc3829883.chain_2976	2	STRG.26063.3,STRG.26063.5,STRG.26063.7,Trinity_GG_14406_c0_g1_i1,Trinity_GG_14406_c0_g1_i4,blat.proc3829883.chain_2978,blat.proc3829883.chain_2979	7
scaffold_8	retained_exon	17811862	17811900	+	asmbl_52499,asmbl_52502	none	STRG.10687.1,Trinity_GG_5905_c0_g1_i7,blat.proc3829875.chain_3121,blat.proc3829875.chain_3124	4	STRG.10687.2,STRG.10687.4,Trinity_GG_5905_c0_g1_i4,blat.proc3829875.chain_3120	4
scaffold_3	alt_donor	589531	589532	+	asmbl_39767	none	STRG.2898.1	1	STRG.2898.2,blat.proc3829871.chain_3066	2
scaffold_9	ends_in_intron	12636443	12636443	+	asmbl_54436	none	blat.proc3829877.chain_358	1	STRG.11574.1,STRG.11574.3,STRG.11574.5,Trinity_GG_6469_c0_g1_i6,blat.proc3829877.chain_355,blat.proc3829877.chain_356	6
scaffold_14	alt_donor	1094470	1094471	+	asmbl_11775	none	STRG.16756.2,blat.proc3829879.chain_1481	2	STRG.16756.1,blat.proc3829879.chain_1479	2
scaffold_6	alt_donor	4538365	4538366	-	asmbl_48280	none	STRG.7428.3	1	STRG.7428.1,STRG.7428.2,Trinity_GG_21203_c1_g2_i3	3
scaffold_2	alternate_exon	181211	181283	+	asmbl_24101	none	STRG.1515.1	1	blat.proc3829871.chain_1578	1
scaffold_4	spliced_intron	9254304	9254682	+	asmbl_42938	none	STRG.4718.1,blat.proc3829873.chain_1007	2	STRG.4718.2	1
scaffold_3	ends_in_intron	16996054	16996054	+	asmbl_40597	none	Trinity_GG_2202_c0_g2_i1	1	STRG.3942.1,STRG.3942.2,Trinity_GG_2202_c0_g1_i2,blat.proc3829873.chain_313	4
scaffold_6	spliced_intron	2699075	2699232	-	asmbl_48099,asmbl_48101	none	STRG.7262.1,blat.proc3829889.chain_3259	2	STRG.7262.2	1
scaffold_18	spliced_intron	839307	839434	-	asmbl_19635,asmbl_19636	none	blat.proc3829897.chain_1924,blat.proc3829897.chain_1925	2	blat.proc3829897.chain_1926	1
scaffold_23	retained_intron	4311119	4313057	+	asmbl_30803	none	blat.proc3829883.chain_2711	1	STRG.25826.1,Trinity_GG_14254_c0_g1_i1,Trinity_GG_14254_c0_g1_i7,blat.proc3829883.chain_2712,blat.proc3829883.chain_2715,blat.proc3829883.chain_2716	6
scaffold_13	ends_in_intron	362178	362178	-	asmbl_9281	none	Trinity_GG_25666_c0_g1_i13,blat.proc3829895.chain_157	2	STRG.15426.1,STRG.15426.3,STRG.15426.4,STRG.15426.5,Trinity_GG_25666_c0_g1_i10,Trinity_GG_25666_c0_g1_i11,Trinity_GG_25666_c0_g1_i14,Trinity_GG_25666_c0_g1_i3,Trinity_GG_25666_c0_g1_i6,Trinity_GG_25666_c0_g1_i8,blat.proc3829895.chain_155,blat.proc3829895.chain_156,blat.proc3829895.chain_159,blat.proc3829895.chain_161,blat.proc3829895.chain_163,blat.proc3829895.chain_165	16
scaffold_1	starts_in_intron	5997066	5997066	-	asmbl_316	none	STRG.403.3,blat.proc3829887.chain_312	2	STRG.403.2,blat.proc3829887.chain_309	2
scaffold_9	alt_acceptor	17833626	17833627	+	asmbl_54626	none	STRG.11861.2	1	STRG.11861.1	1
scaffold_6	starts_in_intron	15085636	15085636	-	asmbl_48985	none	blat.proc3829891.chain_573	1	STRG.8265.1,blat.proc3829891.chain_571	2
scaffold_8	alt_donor	18108227	18108228	+	asmbl_52525	none	STRG.10708.1,Trinity_GG_5942_c0_g1_i1,blat.proc3829875.chain_3201	3	STRG.10708.3,Trinity_GG_5942_c0_g1_i2,blat.proc3829875.chain_3203	3
scaffold_25	starts_in_intron	1464687	1464687	+	asmbl_33376	none	blat.proc3829885.chain_243	1	blat.proc3829885.chain_241,blat.proc3829885.chain_242	2
scaffold_4	alt_donor	4414071	4414072	+	asmbl_42577,asmbl_42589,asmbl_42591,asmbl_42593	none	STRG.4344.1,STRG.4344.4,blat.proc3829873.chain_682,blat.proc3829873.chain_691,blat.proc3829873.chain_697	5	STRG.4344.2,STRG.4344.3,Trinity_GG_2404_c0_g1_i8,blat.proc3829873.chain_683,blat.proc3829873.chain_685,blat.proc3829873.chain_693,blat.proc3829873.chain_694,blat.proc3829873.chain_695	8
scaffold_20	spliced_intron	1490355	1490426	+	asmbl_25572,asmbl_25573,asmbl_25574	none	STRG.22855.1,STRG.22855.3,STRG.22855.5	3	Trinity_GG_12610_c1_g1_i3,Trinity_GG_12610_c1_g1_i4,blat.proc3829883.chain_15,blat.proc3829883.chain_16,blat.proc3829883.chain_17	5
scaffold_3	starts_in_intron	10929002	10929002	+	asmbl_40273	none	Trinity_GG_1999_c0_g1_i2,blat.proc3829871.chain_3711	2	STRG.3529.1,blat.proc3829871.chain_3710	2
scaffold_1	alt_donor	5698156	5698157	+	asmbl_1745	none	STRG.362.2	1	STRG.362.1,Trinity_GG_238_c0_g1_i1,blat.proc3829871.chain_416	3
scaffold_13	starts_in_intron	4375837	4375837	+	asmbl_10768,asmbl_10769	none	blat.proc3829879.chain_404,blat.proc3829879.chain_407	2	STRG.15749.1,STRG.15749.2	2
scaffold_2	spliced_intron	5196150	5196244	-	asmbl_23167	none	STRG.1937.2,blat.proc3829887.chain_1834	2	STRG.1937.1,blat.proc3829887.chain_1835	2
scaffold_14	alternate_exon	12632417	12632590	-	asmbl_13564,asmbl_13567,asmbl_13568,asmbl_13572,asmbl_13574	none	STRG.17566.1,STRG.17566.4,blat.proc3829895.chain_2326,blat.proc3829895.chain_2327,blat.proc3829895.chain_2329,blat.proc3829895.chain_2331	6	STRG.17566.3,blat.proc3829895.chain_2330,blat.proc3829895.chain_2332,blat.proc3829895.chain_2333	4
scaffold_4	alt_acceptor	14290984	14290985	+	asmbl_43191	none	STRG.5049.1,blat.proc3829873.chain_1371	2	STRG.5049.2	1
scaffold_15	alt_donor	6064816	6064817	+	asmbl_14175	none	STRG.18258.1,blat.proc3829879.chain_2893,blat.proc3829879.chain_2894	3	STRG.18258.2	1
scaffold_3	retained_intron	7287291	7287439	-	asmbl_38911	none	STRG.3325.4,Trinity_GG_18801_c0_g1_i5,blat.proc3829887.chain_3067	3	STRG.3325.1,STRG.3325.2,STRG.3325.3,blat.proc3829887.chain_3070,blat.proc3829887.chain_3071	5
scaffold_27	ends_in_intron	129271	129271	-	asmbl_36589,asmbl_36590	none	STRG.28527.4,STRG.28527.5,blat.proc3829901.chain_1643,blat.proc3829901.chain_1646	4	STRG.28527.2,STRG.28527.3,blat.proc3829901.chain_1642,blat.proc3829901.chain_1644	4
scaffold_13	retained_exon	518488	519848	+	asmbl_10456	none	STRG.15434.2,blat.proc3829879.chain_115	2	STRG.15434.3,Trinity_GG_8491_c0_g1_i1,blat.proc3829879.chain_110	3
scaffold_23	alt_donor	7979585	7979586	-	asmbl_31784	none	STRG.26086.1,blat.proc3829899.chain_3185	2	STRG.26086.2	1
scaffold_24	alt_acceptor	7100054	7100055	+	asmbl_32373	none	STRG.26741.1	1	STRG.26741.2	1
scaffold_20	alternate_exon	6178966	6180971	+	asmbl_25807	none	STRG.23208.1,blat.proc3829883.chain_284	2	blat.proc3829883.chain_285	1
scaffold_16	alt_acceptor	14084290	14084291	-	asmbl_16610	none	STRG.19792.1	1	blat.proc3829897.chain_695	1
scaffold_7	alt_donor	5927823	5927824	+	asmbl_50716	none	blat.proc3829875.chain_1205	1	STRG.8891.1,Trinity_GG_4833_c0_g1_i1,Trinity_GG_4833_c0_g1_i4,blat.proc3829875.chain_1203,blat.proc3829875.chain_1204	5
scaffold_10	retained_intron	8898870	8899178	-	asmbl_3543	none	blat.proc3829885.chain_3306	1	STRG.12629.1,blat.proc3829893.chain_1125,blat.proc3829893.chain_1127,blat.proc3829893.chain_1129,blat.proc3829893.chain_1130,blat.proc3829893.chain_1131,blat.proc3829893.chain_1132,blat.proc3829893.chain_1133,blat.proc3829893.chain_1134,blat.proc3829893.chain_1136	10
scaffold_20	starts_in_intron	11381158	11381158	+	asmbl_26189	none	Trinity_GG_13050_c1_g1_i1,blat.proc3829883.chain_708	2	STRG.23634.1,STRG.23634.2,STRG.23634.3,STRG.23634.4,STRG.23634.5,Trinity_GG_13050_c0_g1_i1,Trinity_GG_13050_c0_g1_i2,Trinity_GG_13050_c0_g1_i4,blat.proc3829883.chain_704,blat.proc3829883.chain_705,blat.proc3829883.chain_707	11
scaffold_22	retained_intron	9340082	9340165	-	asmbl_30301	none	STRG.25263.1,blat.proc3829899.chain_2276	2	STRG.25263.3	1
scaffold_6	alternate_exon	17644974	17645565	-	asmbl_49129	none	STRG.8448.2	1	STRG.8448.3,Trinity_GG_21817_c0_g1_i1,blat.proc3829891.chain_745	3
scaffold_16	alt_donor	2214955	2214956	+	asmbl_16912	none	STRG.19114.1,Trinity_GG_10490_c0_g1_i2,blat.proc3829879.chain_3745	3	blat.proc3829879.chain_3744,blat.proc3829879.chain_3746	2
scaffold_21	retained_intron	4649422	4649538	-	asmbl_27604	none	blat.proc3829899.chain_1057	1	STRG.23997.1,blat.proc3829899.chain_1058	2
scaffold_9	alt_donor	8395093	8395094	+	asmbl_54158	none	STRG.11249.5,blat.proc3829877.chain_20	2	STRG.11249.2,STRG.11249.4,blat.proc3829877.chain_18,blat.proc3829877.chain_19,blat.proc3829877.chain_21	5
scaffold_4	starts_in_intron	18302870	18302870	-	asmbl_42109	none	blat.proc3829889.chain_1506,blat.proc3829889.chain_1508	2	STRG.5432.1,blat.proc3829889.chain_1507,blat.proc3829889.chain_1509	3
scaffold_2	retained_intron	8148213	8148395	-	asmbl_23338	none	STRG.2102.2,Trinity_GG_18184_c0_g1_i2,blat.proc3829887.chain_2001	3	STRG.2102.1,Trinity_GG_18184_c0_g1_i1,blat.proc3829887.chain_2000	3
scaffold_22	alternate_exon	231355	231684	-	asmbl_29837,asmbl_29839	none	STRG.24671.1,Trinity_GG_30815_c0_g1_i1,Trinity_GG_30815_c0_g1_i2,blat.proc3829899.chain_1813,blat.proc3829899.chain_1814	5	STRG.24671.2,Trinity_GG_30815_c0_g1_i3,Trinity_GG_30815_c0_g1_i5,blat.proc3829899.chain_1815,blat.proc3829899.chain_1816	5
scaffold_19	ends_in_intron	12317789	12317789	+	asmbl_22585	none	blat.proc3829881.chain_3510	1	STRG.22553.1,blat.proc3829881.chain_3509	2
scaffold_19	alternate_exon	5639126	5641130	-	asmbl_21389	none	blat.proc3829897.chain_2913	1	blat.proc3829897.chain_2914	1
scaffold_1	retained_intron	11895149	11895360	+	asmbl_2145	none	Trinity_GG_499_c0_g1_i2,blat.proc3829871.chain_894	2	STRG.805.1,Trinity_GG_499_c0_g1_i1,blat.proc3829871.chain_895	3
scaffold_9	starts_in_intron	9657541	9657541	+	asmbl_54206	none	Trinity_GG_6322_c0_g1_i6,blat.proc3829877.chain_97	2	STRG.11332.1,STRG.11332.2,blat.proc3829877.chain_100,blat.proc3829877.chain_98,blat.proc3829877.chain_99	5
scaffold_8	spliced_intron	15345104	15345457	+	asmbl_52396	none	STRG.10554.1,Trinity_GG_5868_c0_g1_i2,blat.proc3829875.chain_3048	3	STRG.10554.2,Trinity_GG_5868_c0_g1_i1,blat.proc3829875.chain_3049	3
scaffold_20	alt_acceptor	476091	476092	+	asmbl_25516	none	STRG.22737.1	1	STRG.22737.2	1
scaffold_7	spliced_intron	8518033	8520452	+	asmbl_50897	none	STRG.9071.2	1	STRG.9071.1	1
scaffold_22	alt_acceptor	4592865	4592866	-	asmbl_30035,asmbl_30036	none	STRG.24877.2,blat.proc3829899.chain_1911,blat.proc3829899.chain_1912	3	STRG.24877.1,blat.proc3829899.chain_1913	2
scaffold_28	starts_in_intron	9268632	9268632	+	asmbl_38473	none	STRG.29948.3,Trinity_GG_16535_c0_g1_i1,blat.proc3829885.chain_2950	3	STRG.29948.2	1
scaffold_21	starts_in_intron	3191279	3191279	+	asmbl_28500	none	blat.proc3829883.chain_1040	1	STRG.23934.1,blat.proc3829883.chain_1041,blat.proc3829883.chain_1042	3
scaffold_20	alt_donor	207447	207448	-	asmbl_26399	none	STRG.22689.2,blat.proc3829897.chain_3480	2	STRG.22689.1,blat.proc3829897.chain_3479	2
scaffold_19	starts_in_intron	13024483	13024483	-	asmbl_21808	none	blat.proc3829897.chain_3391	1	STRG.22614.1,STRG.22614.2,STRG.22614.3,blat.proc3829897.chain_3392,blat.proc3829897.chain_3393	5
scaffold_27	retained_exon	3920227	3920466	-	asmbl_36891	none	STRG.28837.1,blat.proc3829901.chain_2030	2	STRG.28837.2	1
scaffold_6	alt_acceptor	1751752	1751753	-	asmbl_48061,asmbl_48062,asmbl_48064,asmbl_48065,asmbl_48066,asmbl_48068	none	STRG.7224.1,STRG.7224.3,STRG.7224.4,STRG.7224.5,STRG.7224.7,blat.proc3829889.chain_3171,blat.proc3829889.chain_3172,blat.proc3829889.chain_3175	8	STRG.7224.6,STRG.7224.8,blat.proc3829889.chain_3170,blat.proc3829889.chain_3174,blat.proc3829889.chain_3176	5
scaffold_14	alt_acceptor	11665591	11665592	-	asmbl_13497,asmbl_13500	none	STRG.17495.1,blat.proc3829895.chain_2185,blat.proc3829895.chain_2186	3	STRG.17495.2,blat.proc3829895.chain_2184,blat.proc3829895.chain_2187	3
scaffold_9	retained_exon	3675428	3675783	-	asmbl_54884	none	STRG.10971.3	1	STRG.10971.1,blat.proc3829891.chain_3074,blat.proc3829891.chain_3084,blat.proc3829891.chain_3085	4
scaffold_20	alt_donor	2844459	2844460	-	asmbl_26602	none	blat.proc3829899.chain_23	1	STRG.23005.1,STRG.23005.4,blat.proc3829899.chain_22,blat.proc3829899.chain_24	4
scaffold_11	alt_acceptor	8295681	8295682	+	asmbl_5708	none	STRG.13823.1,Trinity_GG_7604_c0_g1_i2,blat.proc3829877.chain_2279	3	STRG.13823.2	1
scaffold_3	starts_in_intron	14833802	14833802	+	asmbl_40519,asmbl_40521	none	Trinity_GG_2121_c0_g1_i3,Trinity_GG_2121_c0_g1_i4,blat.proc3829873.chain_185	3	STRG.3834.1,Trinity_GG_2121_c0_g1_i1,blat.proc3829873.chain_184	3
scaffold_1	ends_in_intron	17922053	17922053	-	asmbl_1067	none	Trinity_GG_17638_c0_g1_i2,blat.proc3829887.chain_1072	2	STRG.1251.3	1
scaffold_8	retained_intron	11854269	11855193	+	asmbl_52267,asmbl_52274,asmbl_52277,asmbl_52278,asmbl_52279,asmbl_52280,asmbl_52281,asmbl_52282,asmbl_52283,asmbl_52284	none	STRG.10382.2,STRG.10382.4,blat.proc3829875.chain_2967,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2976,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978	10	blat.proc3829875.chain_2980	1
scaffold_23	spliced_intron	2160936	2161036	+	asmbl_30679	none	STRG.25668.1,blat.proc3829883.chain_2497	2	blat.proc3829883.chain_2498	1
scaffold_12	alternate_exon	15076521	15076638	-	asmbl_8175	none	STRG.15294.1,Trinity_GG_25575_c0_g1_i1,blat.proc3829893.chain_3750	3	STRG.15294.3	1
scaffold_8	ends_in_intron	7728312	7728312	+	asmbl_51979	none	STRG.10075.2	1	STRG.10075.1,blat.proc3829875.chain_2592	2
scaffold_2	alt_acceptor	13959059	13959060	-	asmbl_23560	none	STRG.2383.1,blat.proc3829887.chain_2278	2	STRG.2383.2	1
scaffold_24	ends_in_intron	10480734	10480734	+	asmbl_32568	none	blat.proc3829885.chain_116	1	STRG.26999.2	1
scaffold_21	starts_in_intron	2628490	2628490	+	asmbl_28439	none	Trinity_GG_13240_c0_g1_i3,blat.proc3829883.chain_1046	2	STRG.23884.1,blat.proc3829883.chain_1045	2
scaffold_4	retained_intron	15679041	15679145	-	asmbl_41860	none	STRG.5156.2,blat.proc3829889.chain_1191,blat.proc3829889.chain_1193	3	STRG.5156.1,blat.proc3829889.chain_1189,blat.proc3829889.chain_1190,blat.proc3829889.chain_1192	4
scaffold_14	retained_intron	7436268	7436358	-	asmbl_13182	none	Trinity_GG_26623_c0_g1_i3,blat.proc3829895.chain_1842	2	STRG.17165.1,blat.proc3829895.chain_1843,blat.proc3829895.chain_1844,blat.proc3829895.chain_1846	4
scaffold_13	starts_in_intron	11624379	11624379	-	asmbl_10063	none	blat.proc3829895.chain_995	1	STRG.16299.1,blat.proc3829895.chain_994	2
scaffold_1	alt_acceptor	11572744	11572745	-	asmbl_641,asmbl_645	none	STRG.766.1,blat.proc3829887.chain_578,blat.proc3829887.chain_579	3	STRG.766.2	1
scaffold_6	alt_acceptor	9601610	9601611	+	asmbl_47168	none	STRG.7803.1,blat.proc3829875.chain_174	2	blat.proc3829875.chain_176	1
scaffold_13	alternate_exon	7528194	7528253	-	asmbl_9859	none	STRG.16032.3,Trinity_GG_26032_c0_g1_i4,blat.proc3829895.chain_831	3	STRG.16032.1,STRG.16032.2,Trinity_GG_26032_c0_g1_i1,Trinity_GG_26032_c0_g1_i3,blat.proc3829895.chain_832,blat.proc3829895.chain_833	6
scaffold_28	starts_in_intron	2266751	2266751	-	asmbl_37345	none	STRG.29380.4,blat.proc3829901.chain_2474	2	STRG.29380.1,STRG.29380.2,STRG.29380.3,Trinity_GG_33458_c0_g1_i4,blat.proc3829901.chain_2467,blat.proc3829901.chain_2468,blat.proc3829901.chain_2469,blat.proc3829901.chain_2470,blat.proc3829901.chain_2471	9
scaffold_15	alternate_exon	6884075	6890332	-	asmbl_15286	none	blat.proc3829895.chain_2933	1	Trinity_GG_27246_c0_g1_i4,blat.proc3829895.chain_2938,blat.proc3829895.chain_2941	3
scaffold_6	retained_intron	16387153	16387269	+	asmbl_47634	none	STRG.8360.1,Trinity_GG_4584_c0_g1_i2,blat.proc3829875.chain_734	3	STRG.8360.2,Trinity_GG_4584_c0_g1_i1,blat.proc3829875.chain_735	3
scaffold_6	starts_in_intron	17167321	17167321	+	asmbl_47672	none	STRG.8414.1	1	Trinity_GG_4571_c0_g1_i1,blat.proc3829875.chain_710	2
scaffold_22	alt_acceptor	10321874	10321875	+	asmbl_29644	none	STRG.25367.1	1	STRG.25367.2	1
scaffold_17	spliced_intron	1290559	1290651	-	asmbl_18730	none	STRG.19952.2	1	STRG.19952.6	1
scaffold_21	ends_in_intron	10940191	10940191	+	asmbl_28907	none	Trinity_GG_13573_c1_g1_i1	1	STRG.24555.1,blat.proc3829883.chain_1614	2
scaffold_5	alt_donor	8069330	8069331	+	asmbl_44184	none	STRG.6161.3	1	STRG.6161.1,STRG.6161.2,blat.proc3829873.chain_2255	3
scaffold_1	alternate_exon	11422524	11423300	+	asmbl_2092	none	STRG.751.1,blat.proc3829871.chain_801	2	STRG.751.2	1
scaffold_25	spliced_intron	4458047	4458215	+	asmbl_33502	none	STRG.27362.1,blat.proc3829885.chain_428	2	Trinity_GG_15106_c2_g1_i1,blat.proc3829885.chain_427	2
scaffold_12	ends_in_intron	15087589	15087589	-	asmbl_8180	none	Trinity_GG_25549_c0_g1_i1,blat.proc3829893.chain_3690	2	STRG.15303.1,STRG.15303.2,blat.proc3829893.chain_3689,blat.proc3829893.chain_3691	4
scaffold_1	starts_in_intron	9975242	9975242	+	asmbl_1989	none	blat.proc3829871.chain_625	1	STRG.664.1,blat.proc3829871.chain_626	2
scaffold_4	alt_donor	15027432	15027433	-	asmbl_41835	none	STRG.5113.1,blat.proc3829889.chain_1116	2	STRG.5113.2	1
scaffold_15	retained_exon	4566557	4566617	+	asmbl_14101	none	STRG.18173.2,Trinity_GG_9942_c0_g1_i4,blat.proc3829879.chain_2745	3	STRG.18173.1,Trinity_GG_9942_c0_g1_i1,Trinity_GG_9942_c0_g1_i3,blat.proc3829879.chain_2742,blat.proc3829879.chain_2744	5
scaffold_28	alt_acceptor	9157365	9157366	+	asmbl_38470	none	STRG.29933.2	1	STRG.29933.1,blat.proc3829885.chain_2931	2
scaffold_9	spliced_intron	15384599	15384899	+	asmbl_54537,asmbl_54541	none	STRG.11728.1,blat.proc3829877.chain_490,blat.proc3829877.chain_493	3	blat.proc3829877.chain_492	1
scaffold_16	spliced_intron	5487668	5488014	-	asmbl_16282,asmbl_16283	none	STRG.19290.1,STRG.19290.2,Trinity_GG_27854_c0_g1_i2,Trinity_GG_27854_c0_g1_i3,blat.proc3829897.chain_338,blat.proc3829897.chain_339	6	Trinity_GG_27854_c0_g1_i1,blat.proc3829897.chain_340	2
scaffold_17	alt_acceptor	10050112	10050113	+	asmbl_18287	none	STRG.20609.2,blat.proc3829881.chain_1432	2	blat.proc3829881.chain_1429	1
scaffold_4	retained_intron	4912509	4913152	+	asmbl_42641,asmbl_42642	none	STRG.4386.1,STRG.4386.3,Trinity_GG_2443_c2_g1_i1,blat.proc3829873.chain_780,blat.proc3829873.chain_782	5	STRG.4386.2	1
scaffold_23	alternate_exon	4100078	4100309	-	asmbl_31548	none	STRG.25802.3,blat.proc3829899.chain_2937	2	STRG.25802.1,STRG.25802.2,STRG.25802.4,blat.proc3829899.chain_2933	4
scaffold_13	skipped_exon	4243305	4244305	-	asmbl_9574,asmbl_9576,asmbl_9577	none	STRG.15737.1,STRG.15737.3,STRG.15737.4,blat.proc3829895.chain_477	4	STRG.15737.2,STRG.15737.5,blat.proc3829895.chain_478,blat.proc3829895.chain_479,blat.proc3829895.chain_480	5
scaffold_6	starts_in_intron	11740466	11740466	+	asmbl_47298	none	Trinity_GG_4351_c3_g1_i1,blat.proc3829875.chain_330	2	Trinity_GG_4351_c2_g1_i1	1
scaffold_10	alternate_exon	9070391	9070521	-	asmbl_3578	none	STRG.12647.3	1	STRG.12647.1,STRG.12647.2	2
scaffold_17	alternate_exon	2565158	2565383	+	asmbl_17793,asmbl_17796	none	Trinity_GG_10964_c0_g1_i5,blat.proc3829881.chain_839,blat.proc3829881.chain_841	3	STRG.20039.1,blat.proc3829881.chain_840	2
scaffold_3	starts_in_intron	16347303	16347303	-	asmbl_39446	none	Trinity_GG_19193_c2_g1_i1,blat.proc3829889.chain_2	2	STRG.3908.1,blat.proc3829887.chain_3747	2
scaffold_20	starts_in_intron	11684668	11684668	+	asmbl_26241	none	Trinity_GG_13102_c0_g1_i2,blat.proc3829883.chain_806	2	STRG.23664.1,blat.proc3829883.chain_805	2
scaffold_10	spliced_intron	928914	929115	-	asmbl_2932	none	STRG.11960.1,blat.proc3829893.chain_411	2	STRG.11960.2,Trinity_GG_23668_c0_g1_i2,blat.proc3829893.chain_412	3
scaffold_15	alt_donor	1263961	1263962	+	asmbl_13938	none	STRG.17926.1	1	blat.proc3829879.chain_2600,blat.proc3829879.chain_2602	2
scaffold_19	alternate_exon	7843	7997	+	asmbl_21969	none	STRG.21807.1	1	STRG.21807.3	1
scaffold_28	alt_acceptor	6926010	6926011	-	asmbl_37693	none	STRG.29744.2,blat.proc3829901.chain_2889	2	STRG.29744.3,blat.proc3829901.chain_2887	2
scaffold_12	alternate_exon	10533033	10533174	+	asmbl_8893	none	Trinity_GG_8266_c0_g1_i3,blat.proc3829877.chain_3467	2	STRG.15006.1,STRG.15006.2,Trinity_GG_8266_c0_g1_i1,Trinity_GG_8266_c0_g1_i2,blat.proc3829877.chain_3466,blat.proc3829877.chain_3468	6
scaffold_13	spliced_intron	7936040	7936337	-	asmbl_9874,asmbl_9877	none	STRG.16055.1,blat.proc3829895.chain_798,blat.proc3829895.chain_799	3	STRG.16055.2,STRG.16055.3,blat.proc3829895.chain_800,blat.proc3829895.chain_803	4
scaffold_3	ends_in_intron	7726260	7726260	+	asmbl_40136	none	STRG.3359.1	1	blat.proc3829871.chain_3540,blat.proc3829871.chain_3541	2
scaffold_19	alternate_exon	13088619	13088734	-	asmbl_21812	none	STRG.22612.2	1	STRG.22612.1,blat.proc3829897.chain_3376	2
scaffold_6	ends_in_intron	6872994	6872994	+	asmbl_46949	none	blat.proc3829873.chain_3681	1	blat.proc3829873.chain_3678	1
scaffold_15	starts_in_intron	4964245	4964245	+	asmbl_14123	none	blat.proc3829879.chain_2763	1	STRG.18193.1,STRG.18193.3,STRG.18193.4,Trinity_GG_9948_c0_g1_i1,Trinity_GG_9948_c0_g1_i3,blat.proc3829879.chain_2759,blat.proc3829879.chain_2760,blat.proc3829879.chain_2761,blat.proc3829879.chain_2762,blat.proc3829879.chain_2764	10
scaffold_13	retained_exon	2274821	2274958	-	asmbl_9402	none	STRG.15533.1,blat.proc3829895.chain_316	2	STRG.15533.3,blat.proc3829895.chain_309,blat.proc3829895.chain_313	3
scaffold_4	starts_in_intron	5289914	5289914	-	asmbl_41328	none	blat.proc3829889.chain_554	1	STRG.4421.1,blat.proc3829889.chain_553	2
scaffold_13	spliced_intron	7217234	7217779	+	asmbl_11006,asmbl_11011	none	STRG.16002.2,blat.proc3829879.chain_699	2	blat.proc3829879.chain_693,blat.proc3829879.chain_700	2
scaffold_17	alt_acceptor	2433253	2433254	+	asmbl_17782,asmbl_17783	none	STRG.20019.3,STRG.20019.4	2	STRG.20019.1,STRG.20019.2,Trinity_GG_10968_c0_g1_i2,Trinity_GG_10968_c0_g1_i4,blat.proc3829881.chain_846,blat.proc3829881.chain_848	6
scaffold_13	skipped_exon	11379416	11381831	-	asmbl_10043	none	STRG.16287.2,Trinity_GG_26140_c0_g1_i5,blat.proc3829895.chain_1024	3	STRG.16287.1,blat.proc3829895.chain_1034	2
scaffold_19	spliced_intron	2780819	2780920	+	asmbl_22077,asmbl_22080,asmbl_22082	none	STRG.21950.1,STRG.21950.5,blat.proc3829881.chain_2913	3	STRG.21950.3,STRG.21950.4,Trinity_GG_12146_c0_g1_i7,blat.proc3829881.chain_2910	4
scaffold_19	starts_in_intron	10066451	10066451	+	asmbl_22417,asmbl_22420	none	STRG.22381.3,blat.proc3829881.chain_3298	2	STRG.22381.1,STRG.22381.2,blat.proc3829881.chain_3299,blat.proc3829881.chain_3300	4
scaffold_5	skipped_exon	17025179	17028124	+	asmbl_44793	none	STRG.6870.1	1	STRG.6870.2,Trinity_GG_3742_c0_g1_i2,blat.proc3829873.chain_2966	3
scaffold_12	retained_intron	4783952	4784097	-	asmbl_7579,asmbl_7585,asmbl_7588,asmbl_7589	none	STRG.14646.3,STRG.14646.5,Trinity_GG_25172_c0_g1_i11,blat.proc3829893.chain_3018,blat.proc3829893.chain_3022,blat.proc3829893.chain_3024	6	STRG.14646.1,STRG.14646.2,STRG.14646.4,blat.proc3829893.chain_3017,blat.proc3829893.chain_3019,blat.proc3829893.chain_3021,blat.proc3829893.chain_3023,blat.proc3829893.chain_3025	8
scaffold_11	alt_donor	11627320	11627321	+	asmbl_5943	none	STRG.14074.1,Trinity_GG_7769_c0_g1_i1,blat.proc3829877.chain_2581	3	STRG.14074.2	1
scaffold_18	spliced_intron	4574673	4575183	+	asmbl_20558,asmbl_20559,asmbl_20562,asmbl_20563,asmbl_20564	none	STRG.21237.1,STRG.21237.2,blat.proc3829881.chain_2149,blat.proc3829881.chain_2152,blat.proc3829881.chain_2153,blat.proc3829881.chain_2154	6	blat.proc3829881.chain_2151	1
scaffold_1	retained_intron	14276749	14276836	+	asmbl_2345	none	Trinity_GG_617_c0_g1_i2,blat.proc3829871.chain_1112	2	STRG.1020.1,STRG.1020.2,STRG.1020.3,Trinity_GG_617_c0_g1_i1,Trinity_GG_617_c0_g1_i4,Trinity_GG_617_c0_g1_i5,blat.proc3829871.chain_1109,blat.proc3829871.chain_1110,blat.proc3829871.chain_1111	9
scaffold_26	starts_in_intron	9772738	9772738	+	asmbl_35783,asmbl_35787	none	blat.proc3829885.chain_1435,blat.proc3829885.chain_1436	2	STRG.28501.1,STRG.28501.10,STRG.28501.5,STRG.28501.6,blat.proc3829885.chain_1432,blat.proc3829885.chain_1434,blat.proc3829885.chain_1437	7
scaffold_14	alt_donor	9276923	9276924	-	asmbl_13345,asmbl_13347,asmbl_13349	none	STRG.17323.1,blat.proc3829895.chain_1994,blat.proc3829895.chain_1996,blat.proc3829895.chain_1998	4	STRG.17323.2,blat.proc3829895.chain_1995	2
scaffold_12	retained_intron	12451819	12451938	+	asmbl_8971	none	STRG.15137.1	1	STRG.15137.4	1
scaffold_19	retained_intron	30998	31076	+	asmbl_21973	none	Trinity_GG_12057_c0_g1_i3,blat.proc3829881.chain_2767	2	STRG.21811.1,Trinity_GG_12057_c0_g1_i2,blat.proc3829881.chain_2765	3
scaffold_21	retained_intron	524687	524895	+	asmbl_28295	none	Trinity_GG_13127_c0_g1_i1,blat.proc3829883.chain_856	2	STRG.23731.1,blat.proc3829883.chain_857	2
scaffold_8	starts_in_intron	14251983	14251983	+	asmbl_52357	none	Trinity_GG_5826_c0_g1_i2,blat.proc3829875.chain_2986	2	STRG.10516.1,Trinity_GG_5826_c0_g1_i1,blat.proc3829875.chain_2987	3
scaffold_1	ends_in_intron	1908591	1908591	+	asmbl_1516	none	STRG.115.2	1	STRG.115.1,STRG.115.3,blat.proc3829871.chain_132,blat.proc3829871.chain_134	4
scaffold_13	skipped_exon	7504604	7506710	-	asmbl_9845,asmbl_9846,asmbl_9851	none	STRG.16034.2,STRG.16034.5,Trinity_GG_26030_c0_g1_i9,blat.proc3829895.chain_820	4	STRG.16034.1,blat.proc3829895.chain_813,blat.proc3829895.chain_822	3
scaffold_3	spliced_intron	10628322	10628697	+	asmbl_40234,asmbl_40241	none	STRG.3509.3,blat.proc3829871.chain_3607	2	blat.proc3829871.chain_3604,blat.proc3829871.chain_3606	2
scaffold_8	skipped_exon	9128357	9129084	-	asmbl_53003	none	STRG.10161.1	1	STRG.10161.2,STRG.10161.3,STRG.10161.4,blat.proc3829891.chain_2335,blat.proc3829891.chain_2336	5
scaffold_9	starts_in_intron	1597301	1597301	+	asmbl_53809	none	blat.proc3829875.chain_3329	1	STRG.10843.1,blat.proc3829875.chain_3330	2
scaffold_4	alt_acceptor	7267214	7267215	+	asmbl_42815	none	STRG.4560.7,Trinity_GG_2542_c0_g1_i4,blat.proc3829873.chain_960	3	STRG.4560.2,Trinity_GG_2542_c0_g1_i1,blat.proc3829873.chain_958	3
scaffold_16	alternate_exon	7824556	7824597	+	asmbl_17156	none	STRG.19414.1	1	STRG.19414.2,blat.proc3829881.chain_295	2
scaffold_28	alt_donor	816778	816779	-	asmbl_37263	none	blat.proc3829901.chain_2369	1	STRG.29276.1	1
scaffold_15	skipped_exon	344496	346454	+	asmbl_13900	none	STRG.17869.1,blat.proc3829879.chain_2553	2	STRG.17869.2	1
scaffold_19	alt_acceptor	12972587	12972588	-	asmbl_21787,asmbl_21788	none	STRG.22606.4,Trinity_GG_29578_c0_g1_i4,Trinity_GG_29578_c0_g1_i8,blat.proc3829897.chain_3320,blat.proc3829897.chain_3323	5	STRG.22606.5,Trinity_GG_29578_c0_g1_i5,blat.proc3829897.chain_3321	3
scaffold_1	spliced_intron	14355835	14355988	-	asmbl_908	none	blat.proc3829887.chain_909	1	blat.proc3829887.chain_908	1
scaffold_25	starts_in_intron	6753954	6753954	+	asmbl_33639	none	Trinity_GG_15170_c0_g1_i1,blat.proc3829885.chain_550	2	STRG.27519.1	1
scaffold_13	alt_donor	14564852	14564853	-	asmbl_10164,asmbl_10165,asmbl_10166,asmbl_10167,asmbl_10170	none	STRG.16497.2,STRG.16497.3,STRG.16497.4,STRG.16497.5,Trinity_GG_26221_c0_g1_i4,blat.proc3829895.chain_1169	6	STRG.16497.1,Trinity_GG_26221_c0_g1_i2,blat.proc3829895.chain_1167,blat.proc3829895.chain_1168,blat.proc3829895.chain_1172	5
scaffold_15	spliced_intron	4117643	4117871	-	asmbl_15131	none	STRG.18141.2,blat.proc3829895.chain_2826	2	STRG.18141.1,STRG.18141.3,Trinity_GG_27184_c0_g1_i1,blat.proc3829895.chain_2828	4
scaffold_3	alt_acceptor	13831842	13831843	-	asmbl_39256	none	blat.proc3829887.chain_3510	1	STRG.3720.1	1
scaffold_8	alt_acceptor	8269434	8269435	-	asmbl_52940,asmbl_52941	none	STRG.10099.1,Trinity_GG_22659_c0_g1_i4,blat.proc3829891.chain_2271,blat.proc3829891.chain_2272	4	STRG.10099.2,blat.proc3829891.chain_2270	2
scaffold_10	spliced_intron	12946554	12946681	+	asmbl_4832	none	STRG.12875.1,Trinity_GG_7112_c0_g1_i1,blat.proc3829877.chain_1470	3	Trinity_GG_7112_c0_g1_i2,blat.proc3829877.chain_1469	2
scaffold_22	spliced_intron	7896054	7896156	-	asmbl_30202,asmbl_30203	none	STRG.25124.1,STRG.25124.2,blat.proc3829899.chain_2228	3	blat.proc3829899.chain_2225	1
scaffold_4	alternate_exon	17129759	17130977	-	asmbl_42009	none	STRG.5313.2,Trinity_GG_19982_c0_g1_i3	2	Trinity_GG_19982_c0_g1_i2,blat.proc3829889.chain_1384	2
scaffold_8	alt_acceptor	6018616	6018617	-	asmbl_52848	none	STRG.10005.2,Trinity_GG_22594_c0_g1_i2,blat.proc3829891.chain_2160	3	STRG.10005.1,Trinity_GG_22594_c0_g1_i3,blat.proc3829891.chain_2159	3
scaffold_13	skipped_exon	15510436	15512102	+	asmbl_11490,asmbl_11491	none	STRG.16580.1,blat.proc3829879.chain_1334,blat.proc3829879.chain_1335	3	STRG.16580.2	1
scaffold_6	retained_exon	2881249	2881305	-	asmbl_48127	none	STRG.7279.1,blat.proc3829889.chain_3251	2	STRG.7279.2,blat.proc3829889.chain_3249	2
scaffold_11	spliced_intron	8099759	8099979	+	asmbl_5686,asmbl_5687,asmbl_5688,asmbl_5689,asmbl_5692	none	STRG.13810.1,STRG.13810.2,STRG.13810.3,STRG.13810.4,Trinity_GG_7614_c0_g1_i1,Trinity_GG_7614_c0_g1_i3,Trinity_GG_7614_c0_g1_i4,Trinity_GG_7614_c0_g1_i6,blat.proc3829877.chain_2293,blat.proc3829877.chain_2294,blat.proc3829877.chain_2295,blat.proc3829877.chain_2296	12	Trinity_GG_7614_c0_g1_i2,Trinity_GG_7614_c0_g1_i5,blat.proc3829877.chain_2292,blat.proc3829877.chain_2297	4
scaffold_5	spliced_intron	10196467	10196618	-	asmbl_45702,asmbl_45703,asmbl_45708	none	STRG.6312.1,blat.proc3829889.chain_2386,blat.proc3829889.chain_2387,blat.proc3829889.chain_2389	4	blat.proc3829889.chain_2393	1
scaffold_8	ends_in_intron	11854268	11854268	+	asmbl_52272,asmbl_52273	none	blat.proc3829875.chain_2966,blat.proc3829875.chain_2971	2	STRG.10382.3,blat.proc3829875.chain_2968,blat.proc3829875.chain_2975,blat.proc3829875.chain_2979	4
scaffold_8	retained_intron	16619457	16619609	-	asmbl_53442	none	blat.proc3829891.chain_2790	1	STRG.10625.1,blat.proc3829891.chain_2789	2
scaffold_12	alternate_exon	3805788	3809087	+	asmbl_8531	none	STRG.14574.1,blat.proc3829877.chain_3096,blat.proc3829877.chain_3097	3	STRG.14574.2,STRG.14574.3,blat.proc3829877.chain_3095	3
scaffold_6	starts_in_intron	6952735	6952735	+	asmbl_46969	none	STRG.7599.2	1	STRG.7599.1,blat.proc3829873.chain_3712,blat.proc3829873.chain_3713	3
scaffold_11	starts_in_intron	1016197	1016197	-	asmbl_6379	none	blat.proc3829893.chain_1725	1	STRG.13289.1,STRG.13289.2,blat.proc3829893.chain_1723,blat.proc3829893.chain_1724	4
scaffold_6	spliced_intron	8172579	8172708	-	asmbl_48474,asmbl_48475	none	STRG.7691.1,Trinity_GG_21366_c0_g1_i3,blat.proc3829889.chain_3717,blat.proc3829889.chain_3719	4	Trinity_GG_21366_c0_g1_i13,Trinity_GG_21366_c0_g1_i6,blat.proc3829889.chain_3718,blat.proc3829889.chain_3720,blat.proc3829889.chain_3721,blat.proc3829889.chain_3723	6
scaffold_14	alt_donor	6671832	6671833	-	asmbl_13131	none	STRG.17097.2,blat.proc3829895.chain_1799	2	STRG.17097.1,blat.proc3829895.chain_1800	2
scaffold_9	alt_acceptor	13300118	13300119	-	asmbl_55383,asmbl_55387	none	STRG.11625.1,STRG.11625.4	2	STRG.11625.2,STRG.11625.3,STRG.11625.5,STRG.11625.6,STRG.11625.7	5
scaffold_15	alt_acceptor	12391903	12391904	-	asmbl_15588,asmbl_15593	none	STRG.18686.4,STRG.18686.5	2	STRG.18686.2,STRG.18686.3	2
scaffold_15	retained_exon	345701	345796	+	asmbl_13901	none	STRG.17869.2	1	STRG.17869.1,blat.proc3829879.chain_2553	2
scaffold_1	retained_intron	1909884	1910238	+	asmbl_1513	none	STRG.115.3,Trinity_GG_81_c0_g1_i4,blat.proc3829871.chain_133	3	STRG.115.1,blat.proc3829871.chain_132,blat.proc3829871.chain_134	3
scaffold_4	spliced_intron	4433714	4433862	+	asmbl_42601	none	STRG.4341.3	1	STRG.4341.1,blat.proc3829873.chain_731	2
scaffold_28	retained_intron	5228162	5228281	-	asmbl_37579	none	blat.proc3829901.chain_2677	1	STRG.29650.2,blat.proc3829901.chain_2672	2
scaffold_10	retained_intron	1425641	1425720	+	asmbl_4216,asmbl_4217,asmbl_4219	none	STRG.12005.2,Trinity_GG_6688_c0_g1_i3,Trinity_GG_6688_c0_g1_i8,blat.proc3829877.chain_727,blat.proc3829877.chain_730,blat.proc3829877.chain_732	6	STRG.12005.3,Trinity_GG_6688_c0_g1_i4,blat.proc3829877.chain_728,blat.proc3829877.chain_733	4
scaffold_21	alt_donor	3015285	3015286	+	asmbl_28456,asmbl_28458,asmbl_28459	none	STRG.23914.2,blat.proc3829883.chain_1069,blat.proc3829883.chain_1070,blat.proc3829883.chain_1071	4	STRG.23914.1,blat.proc3829883.chain_1067	2
scaffold_15	spliced_intron	4231266	4231387	+	asmbl_14074	none	blat.proc3829879.chain_2811	1	Trinity_GG_9974_c0_g1_i8,blat.proc3829879.chain_2807	2
scaffold_28	starts_in_intron	2928331	2928331	+	asmbl_38120	none	blat.proc3829885.chain_2534	1	STRG.29466.1,Trinity_GG_16319_c0_g1_i1,blat.proc3829885.chain_2535	3
scaffold_27	starts_in_intron	9917545	9917545	+	asmbl_36495	none	Trinity_GG_16190_c1_g1_i5,blat.proc3829885.chain_2335	2	Trinity_GG_16190_c1_g1_i6,blat.proc3829885.chain_2332,blat.proc3829885.chain_2333	3
scaffold_17	retained_intron	9532452	9532877	+	asmbl_18235,asmbl_18236	none	blat.proc3829881.chain_1349,blat.proc3829881.chain_1353	2	STRG.20566.1,STRG.20566.2,Trinity_GG_11250_c0_g1_i4,Trinity_GG_11250_c0_g1_i7,blat.proc3829881.chain_1350,blat.proc3829881.chain_1352	6
scaffold_17	starts_in_intron	2536907	2536907	-	asmbl_18805	none	blat.proc3829897.chain_988	1	STRG.20035.1,STRG.20035.3,blat.proc3829897.chain_984,blat.proc3829897.chain_987	4
scaffold_10	alt_acceptor	10809853	10809854	+	asmbl_4718	none	Trinity_GG_7031_c0_g1_i2,blat.proc3829877.chain_1311	2	STRG.12757.1,Trinity_GG_7031_c0_g1_i1,blat.proc3829877.chain_1312	3
scaffold_3	alt_donor	3315174	3315175	+	asmbl_39911	none	blat.proc3829887.chain_2846	1	blat.proc3829887.chain_2845	1
scaffold_1	starts_in_intron	11055650	11055650	-	asmbl_615	none	blat.proc3829887.chain_641	1	STRG.721.1,blat.proc3829887.chain_640	2
scaffold_17	alt_acceptor	789552	789553	+	asmbl_17703,asmbl_17705	none	STRG.19917.2,blat.proc3829881.chain_713	2	STRG.19917.1	1
scaffold_1	starts_in_intron	20346338	20346338	+	asmbl_2612	none	Trinity_GG_815_c2_g1_i5,blat.proc3829871.chain_1451	2	STRG.1398.2,STRG.1398.3,STRG.1398.4,STRG.1398.5,STRG.1398.6,Trinity_GG_815_c2_g1_i10,Trinity_GG_815_c2_g1_i6,blat.proc3829871.chain_1446,blat.proc3829871.chain_1448,blat.proc3829871.chain_1450,blat.proc3829871.chain_1452,blat.proc3829871.chain_1453,blat.proc3829871.chain_1454	13
scaffold_22	starts_in_intron	4577470	4577470	+	asmbl_29323	none	blat.proc3829883.chain_1897	1	STRG.24871.1,blat.proc3829883.chain_1895,blat.proc3829883.chain_1899	3
scaffold_26	retained_intron	426465	426666	+	asmbl_35213	none	STRG.27851.1	1	STRG.27850.1,blat.proc3829885.chain_853,blat.proc3829885.chain_854,blat.proc3829885.chain_855	4
scaffold_28	ends_in_intron	4939818	4939818	-	asmbl_37554	none	Trinity_GG_33612_c0_g1_i2,blat.proc3829901.chain_2747	2	STRG.29627.1,Trinity_GG_33612_c0_g1_i1,blat.proc3829901.chain_2745	3
scaffold_14	retained_intron	151803	151904	-	asmbl_12760,asmbl_12763,asmbl_12764	none	STRG.16700.4,Trinity_GG_26353_c0_g1_i1,blat.proc3829895.chain_1387,blat.proc3829895.chain_1388	4	STRG.16700.5,blat.proc3829895.chain_1383	2
scaffold_7	starts_in_intron	12270073	12270073	+	asmbl_51113,asmbl_51115	none	STRG.9313.6,STRG.9313.7,blat.proc3829875.chain_1715	3	STRG.9313.2,STRG.9313.3,STRG.9313.4,STRG.9313.5,Trinity_GG_5141_c0_g1_i1,Trinity_GG_5141_c0_g1_i2,Trinity_GG_5141_c0_g1_i5,Trinity_GG_5141_c0_g1_i6,Trinity_GG_5141_c0_g1_i8,blat.proc3829875.chain_1712,blat.proc3829875.chain_1713,blat.proc3829875.chain_1714	12
scaffold_18	spliced_intron	5584921	5585267	-	asmbl_19902,asmbl_19903	none	STRG.21304.1,STRG.21304.2,blat.proc3829897.chain_2194	3	Trinity_GG_28951_c1_g1_i4,blat.proc3829897.chain_2182,blat.proc3829897.chain_2193,blat.proc3829897.chain_2195	4
scaffold_17	spliced_intron	9030443	9030964	-	asmbl_19186,asmbl_19189,asmbl_19190,asmbl_19191	none	STRG.20520.1,STRG.20520.2,STRG.20520.5,STRG.20520.6,blat.proc3829897.chain_1455	5	Trinity_GG_28534_c0_g1_i3,blat.proc3829897.chain_1456	2
scaffold_15	spliced_intron	2903698	2903915	-	asmbl_15068	none	STRG.18064.7,blat.proc3829895.chain_2735	2	STRG.18064.2,STRG.18064.6,blat.proc3829895.chain_2737	3
scaffold_19	starts_in_intron	11460862	11460862	-	asmbl_21599	none	blat.proc3829897.chain_3113	1	STRG.22464.1,blat.proc3829897.chain_3111,blat.proc3829897.chain_3112,blat.proc3829897.chain_3115,blat.proc3829897.chain_3116	5
scaffold_11	spliced_intron	15653309	15653408	-	asmbl_7178,asmbl_7179,asmbl_7181,asmbl_7182	none	STRG.14297.1,blat.proc3829893.chain_2729,blat.proc3829893.chain_2732,blat.proc3829893.chain_2733,blat.proc3829893.chain_2737	5	STRG.14297.2,Trinity_GG_25013_c0_g1_i13,blat.proc3829893.chain_2731,blat.proc3829893.chain_2735,blat.proc3829893.chain_2736	5
scaffold_5	alt_acceptor	2327399	2327400	-	asmbl_45277	none	STRG.5755.2	1	STRG.5755.1,blat.proc3829889.chain_1843	2
scaffold_19	spliced_intron	9488173	9488268	-	asmbl_21540	none	STRG.22368.1,blat.proc3829897.chain_3080	2	blat.proc3829897.chain_3079	1
scaffold_26	alt_acceptor	6707716	6707717	-	asmbl_34975	none	STRG.28358.2	1	STRG.28358.1,blat.proc3829901.chain_1524	2
scaffold_5	alt_donor	11080004	11080005	+	asmbl_44398,asmbl_44399	none	STRG.6389.2,STRG.6389.3,blat.proc3829873.chain_2532,blat.proc3829873.chain_2533	4	STRG.6389.1,blat.proc3829873.chain_2530,blat.proc3829873.chain_2531	3
scaffold_20	retained_intron	3440981	3441081	-	asmbl_26616	none	STRG.23036.1,Trinity_GG_29863_c0_g1_i1,blat.proc3829899.chain_53	3	STRG.23036.2	1
scaffold_9	retained_exon	16559280	16560430	-	asmbl_55549	none	STRG.11797.5	1	STRG.11797.1,STRG.11797.4,Trinity_GG_23481_c0_g3_i5,Trinity_GG_23481_c0_g3_i6,blat.proc3829893.chain_85,blat.proc3829893.chain_88	6
scaffold_5	spliced_intron	9085338	9085435	+	asmbl_44259,asmbl_44265,asmbl_44270	none	STRG.6237.1,STRG.6237.3,blat.proc3829873.chain_2419,blat.proc3829873.chain_2423	4	STRG.6237.2,blat.proc3829873.chain_2418,blat.proc3829873.chain_2421,blat.proc3829873.chain_2422,blat.proc3829873.chain_2424	5
scaffold_6	starts_in_intron	12869209	12869209	+	asmbl_47373	none	Trinity_GG_4363_c0_g1_i2,blat.proc3829875.chain_362	2	STRG.8038.1,Trinity_GG_4363_c0_g1_i3,blat.proc3829875.chain_361,blat.proc3829875.chain_363	4
scaffold_5	alternate_exon	8763954	8764281	-	asmbl_45619	none	STRG.6204.2,Trinity_GG_20507_c0_g1_i1,blat.proc3829889.chain_2287	3	STRG.6204.1,Trinity_GG_20507_c0_g1_i4,blat.proc3829889.chain_2288	3
scaffold_22	spliced_intron	1626257	1626515	-	asmbl_29908	none	STRG.24737.2,blat.proc3829899.chain_1861	2	STRG.24737.1,blat.proc3829899.chain_1860	2
scaffold_26	retained_exon	4333329	4333373	-	asmbl_34820	none	STRG.28149.4	1	STRG.28149.1	1
scaffold_14	spliced_intron	3243702	3243805	+	asmbl_11902,asmbl_11903,asmbl_11907	none	STRG.16901.1,STRG.16901.2,blat.proc3829879.chain_1549,blat.proc3829879.chain_1551,blat.proc3829879.chain_1553	5	Trinity_GG_9263_c0_g1_i1,Trinity_GG_9263_c0_g1_i8,blat.proc3829879.chain_1552,blat.proc3829879.chain_1554,blat.proc3829879.chain_1555	5
scaffold_1	starts_in_intron	12448823	12448823	+	asmbl_2207	none	Trinity_GG_494_c0_g1_i2,blat.proc3829871.chain_886	2	STRG.856.1,STRG.856.2,STRG.856.4,STRG.856.5,Trinity_GG_494_c0_g1_i5,Trinity_GG_494_c0_g1_i8,blat.proc3829871.chain_883,blat.proc3829871.chain_888	8
scaffold_3	alt_acceptor	13160382	13160383	+	asmbl_40379,asmbl_40383,asmbl_40384	none	STRG.3678.3,STRG.3678.4,blat.proc3829873.chain_36,blat.proc3829873.chain_37	4	STRG.3678.1,STRG.3678.2,blat.proc3829873.chain_39	3
scaffold_8	ends_in_intron	4852504	4852504	+	asmbl_51850	none	blat.proc3829875.chain_2452	1	STRG.9942.1,STRG.9942.2,blat.proc3829875.chain_2454,blat.proc3829875.chain_2455,blat.proc3829875.chain_2456	5
scaffold_24	ends_in_intron	161810	161810	-	asmbl_32693	none	STRG.26299.2	1	STRG.26299.1,Trinity_GG_31713_c1_g1_i1,blat.proc3829899.chain_3377	3
scaffold_3	retained_exon	14573434	14573502	-	asmbl_39347	none	STRG.3795.3	1	STRG.3795.1,STRG.3795.2,blat.proc3829887.chain_3612,blat.proc3829887.chain_3613,blat.proc3829887.chain_3615	5
scaffold_18	spliced_intron	824174	824807	+	asmbl_20352	none	STRG.20996.1,blat.proc3829881.chain_1781	2	STRG.20996.2,Trinity_GG_11513_c0_g1_i7,blat.proc3829881.chain_1778,blat.proc3829881.chain_1780	4
scaffold_22	skipped_exon	7248508	7249417	-	asmbl_30150	none	STRG.25046.2	1	STRG.25046.1	1
scaffold_3	spliced_intron	5006311	5007041	+	asmbl_40017,asmbl_40019	none	STRG.3199.1,STRG.3199.2	2	STRG.3199.4,Trinity_GG_1799_c0_g2_i4,Trinity_GG_1799_c4_g1_i1,blat.proc3829871.chain_3362,blat.proc3829871.chain_3366	5
scaffold_8	alternate_exon	17974809	17974946	-	asmbl_53508	none	STRG.10695.2	1	STRG.10695.3	1
scaffold_12	alt_donor	2661709	2661710	+	asmbl_8467,asmbl_8468	none	STRG.14495.1,STRG.14495.3,blat.proc3829877.chain_2969,blat.proc3829877.chain_2970	4	blat.proc3829877.chain_2972	1
scaffold_17	retained_intron	7046365	7047019	+	asmbl_18021	none	Trinity_GG_11134_c0_g1_i1	1	blat.proc3829881.chain_1119	1
scaffold_5	retained_intron	15044032	15044157	-	asmbl_46019	none	STRG.6692.4	1	STRG.6692.5	1
scaffold_27	spliced_intron	512659	512738	-	asmbl_36649,asmbl_36650	none	STRG.28552.3,blat.proc3829901.chain_1737	2	STRG.28552.1,STRG.28552.2,Trinity_GG_32979_c0_g1_i2,blat.proc3829901.chain_1736	4
scaffold_5	alternate_exon	4752082	4755038	+	asmbl_43960	none	STRG.5927.1,blat.proc3829873.chain_2071	2	Trinity_GG_3243_c0_g1_i3	1
scaffold_7	retained_exon	7416484	7417321	+	asmbl_50805	none	STRG.8984.2,Trinity_GG_4975_c0_g1_i1,blat.proc3829875.chain_1434	3	STRG.8984.1,blat.proc3829875.chain_1433	2
scaffold_21	retained_intron	6479488	6479867	+	asmbl_28667	none	STRG.24154.1,Trinity_GG_13375_c0_g1_i2,blat.proc3829883.chain_1282	3	blat.proc3829883.chain_1283	1
scaffold_26	starts_in_intron	4325594	4325594	-	asmbl_34823	none	blat.proc3829901.chain_1311	1	STRG.28149.1,STRG.28149.2,STRG.28149.3,STRG.28149.4,blat.proc3829901.chain_1308	5
scaffold_14	starts_in_intron	12826556	12826556	-	asmbl_13599	none	STRG.17589.2,blat.proc3829895.chain_2338	2	STRG.17589.1,STRG.17589.4,blat.proc3829895.chain_2339	3
scaffold_2	alt_donor	4578467	4578468	+	asmbl_24386	none	STRG.1884.3	1	STRG.1884.2,Trinity_GG_1044_c1_g1_i4,blat.proc3829871.chain_1915,blat.proc3829871.chain_1916,blat.proc3829871.chain_1917	5
scaffold_9	retained_exon	18355949	18356027	-	asmbl_55662	none	STRG.11870.1,blat.proc3829893.chain_284	2	STRG.11870.2,blat.proc3829893.chain_286	2
scaffold_1	alt_donor	18030006	18030007	-	asmbl_1074	none	STRG.1264.4	1	blat.proc3829871.chain_1253	1
scaffold_6	spliced_intron	11456049	11456165	-	asmbl_48688	none	STRG.7928.2,blat.proc3829891.chain_175	2	STRG.7928.1,blat.proc3829891.chain_174	2
scaffold_7	spliced_intron	12387041	12387135	-	asmbl_50013,asmbl_50015,asmbl_50016,asmbl_50017,asmbl_50018,asmbl_50019,asmbl_50020	none	STRG.9328.1,blat.proc3829891.chain_1531,blat.proc3829891.chain_1532,blat.proc3829891.chain_1533,blat.proc3829891.chain_1534,blat.proc3829891.chain_1535,blat.proc3829891.chain_1536,blat.proc3829891.chain_1538	8	blat.proc3829891.chain_1537	1
scaffold_10	spliced_intron	1424584	1425202	+	asmbl_4214,asmbl_4215,asmbl_4216	none	STRG.12005.4,Trinity_GG_6688_c0_g1_i3,Trinity_GG_6688_c0_g1_i4,Trinity_GG_6688_c0_g1_i6,blat.proc3829877.chain_728,blat.proc3829877.chain_729,blat.proc3829877.chain_730	7	STRG.12005.1,STRG.12005.2,STRG.12005.3,STRG.12005.5,Trinity_GG_6688_c0_g1_i8,blat.proc3829877.chain_727,blat.proc3829877.chain_731,blat.proc3829877.chain_732,blat.proc3829877.chain_733	9
scaffold_10	retained_intron	5200830	5200903	-	asmbl_3262,asmbl_3264	none	STRG.12339.1,blat.proc3829893.chain_801,blat.proc3829893.chain_802	3	STRG.12339.2,blat.proc3829893.chain_799	2
scaffold_25	spliced_intron	7905436	7905495	-	asmbl_34385	none	blat.proc3829901.chain_903	1	STRG.27599.1	1
scaffold_4	spliced_intron	3231784	3232008	-	asmbl_41158,asmbl_41159	none	STRG.4246.1,blat.proc3829889.chain_340	2	blat.proc3829889.chain_344	1
scaffold_7	alternate_exon	6651730	6651884	-	asmbl_49741	none	STRG.8928.1,blat.proc3829891.chain_1244	2	STRG.8928.2,blat.proc3829891.chain_1243	2
scaffold_3	spliced_intron	8161846	8161989	-	asmbl_38965	none	blat.proc3829887.chain_3140	1	Trinity_GG_18833_c2_g2_i2,blat.proc3829887.chain_3139	2
scaffold_1	retained_intron	11174211	11174990	+	asmbl_2064,asmbl_2065,asmbl_2076,asmbl_2077	none	STRG.743.1,STRG.743.3,blat.proc3829871.chain_815,blat.proc3829871.chain_818,blat.proc3829871.chain_820,blat.proc3829871.chain_821,blat.proc3829871.chain_825	7	STRG.743.4,STRG.743.5,blat.proc3829871.chain_824	3
scaffold_2	starts_in_intron	9786717	9786717	+	asmbl_24725	none	blat.proc3829871.chain_2221	1	STRG.2185.1,blat.proc3829871.chain_2216,blat.proc3829871.chain_2219,blat.proc3829871.chain_2220,blat.proc3829871.chain_2222	5
scaffold_1	alt_acceptor	2119590	2119591	-	asmbl_111	none	STRG.139.1,blat.proc3829887.chain_47	2	STRG.139.2	1
scaffold_8	retained_exon	17464116	17464202	-	asmbl_53472	none	STRG.10661.1,blat.proc3829891.chain_2826	2	STRG.10661.2,blat.proc3829891.chain_2825	2
scaffold_18	alt_donor	12935267	12935268	+	asmbl_21003	none	STRG.21731.2	1	STRG.21731.1,blat.proc3829897.chain_2535	2
scaffold_26	alt_donor	3789751	3789752	+	asmbl_35364	none	STRG.28051.4	1	STRG.28051.1,STRG.28051.2	2
scaffold_5	alt_donor	9811725	9811726	+	asmbl_44313,asmbl_44315	none	STRG.6289.2,STRG.6289.4,blat.proc3829873.chain_2412	3	STRG.6289.3,STRG.6289.5	2
scaffold_9	alt_acceptor	9707759	9707760	+	asmbl_54214,asmbl_54217	none	STRG.11336.2,Trinity_GG_6324_c1_g1_i1,blat.proc3829877.chain_109,blat.proc3829877.chain_111	4	STRG.11336.3,Trinity_GG_6324_c1_g1_i12,blat.proc3829877.chain_113,blat.proc3829877.chain_114	4
scaffold_13	alt_acceptor	16460509	16460510	-	asmbl_10278	none	STRG.16689.5	1	STRG.16689.1,STRG.16689.3,STRG.16689.4,Trinity_GG_26334_c0_g1_i2,Trinity_GG_26334_c0_g1_i3,blat.proc3829895.chain_1353,blat.proc3829895.chain_1355,blat.proc3829895.chain_1357	8
scaffold_9	ends_in_intron	15495990	15495990	-	asmbl_55499	none	STRG.11737.4,blat.proc3829893.chain_116	2	STRG.11737.1,STRG.11737.3,blat.proc3829893.chain_117,blat.proc3829893.chain_120	4
scaffold_23	alt_acceptor	7402818	7402819	+	asmbl_30989,asmbl_30991	none	STRG.26040.2,STRG.26040.3	2	STRG.26040.1	1
scaffold_26	starts_in_intron	3430984	3430984	+	asmbl_35310	none	blat.proc3829885.chain_903	1	STRG.28008.1,blat.proc3829885.chain_900	2
scaffold_8	ends_in_intron	10135140	10135140	+	asmbl_52133,asmbl_52135	none	STRG.10260.1,Trinity_GG_5705_c0_g1_i1,blat.proc3829875.chain_2762,blat.proc3829875.chain_2763	4	STRG.10260.2	1
scaffold_1	retained_intron	16923881	16923994	-	asmbl_1022	none	STRG.1193.3	1	STRG.1193.2	1
scaffold_15	starts_in_intron	11407529	11407529	-	asmbl_15517	none	blat.proc3829895.chain_3394	1	STRG.18604.1,STRG.18604.3,blat.proc3829895.chain_3392,blat.proc3829895.chain_3397	4
scaffold_2	starts_in_intron	6899223	6899223	+	asmbl_24536	none	Trinity_GG_1103_c4_g1_i1,blat.proc3829871.chain_2027	2	blat.proc3829871.chain_2015,blat.proc3829871.chain_2016	2
scaffold_1	spliced_intron	14201846	14202390	+	asmbl_2325,asmbl_2327,asmbl_2329	none	STRG.1004.3,Trinity_GG_586_c0_g1_i5,blat.proc3829871.chain_1049,blat.proc3829871.chain_1052	4	STRG.1004.2,Trinity_GG_586_c0_g1_i2,Trinity_GG_586_c0_g1_i4,Trinity_GG_586_c0_g1_i9,blat.proc3829871.chain_1046,blat.proc3829871.chain_1047,blat.proc3829871.chain_1050	7
scaffold_20	alt_acceptor	5544470	5544471	+	asmbl_25777	none	STRG.23164.2	1	STRG.23164.1	1
scaffold_13	skipped_exon	405375	406892	-	asmbl_9305,asmbl_9308,asmbl_9311,asmbl_9312,asmbl_9314,asmbl_9316	none	STRG.15428.1,Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i7,blat.proc3829895.chain_221,blat.proc3829895.chain_222,blat.proc3829895.chain_229,blat.proc3829895.chain_230,blat.proc3829895.chain_232	10	STRG.15428.3,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_220,blat.proc3829895.chain_224,blat.proc3829895.chain_233	6
scaffold_9	retained_intron	5844925	5845204	-	asmbl_55004	none	Trinity_GG_23202_c0_g1_i1,blat.proc3829891.chain_3312	2	STRG.11140.1,blat.proc3829891.chain_3313	2
scaffold_21	alt_donor	1054574	1054575	-	asmbl_27402,asmbl_27406	none	STRG.23776.1,Trinity_GG_30261_c0_g1_i4,blat.proc3829899.chain_852	3	STRG.23776.2,STRG.23776.3,Trinity_GG_30261_c0_g1_i11,blat.proc3829899.chain_850	4
scaffold_58	retained_intron	22910	23017	+	asmbl_46559	none	STRG.30059.1,Trinity_GG_16625_c0_g1_i1,Trinity_GG_16644_c0_g1_i1,blat.proc3829885.chain_3094,blat.proc3829885.chain_3126	5	STRG.30059.2	1
scaffold_17	alternate_exon	9008072	9009347	+	asmbl_18180,asmbl_18183	none	STRG.20513.2,STRG.20513.3,blat.proc3829881.chain_1319	3	STRG.20513.1,blat.proc3829881.chain_1321	2
scaffold_5	alternate_exon	9149299	9149693	+	asmbl_44278	none	STRG.6243.1,blat.proc3829873.chain_2394	2	STRG.6243.2,blat.proc3829873.chain_2395	2
scaffold_4	alt_donor	667424	667425	-	asmbl_41085	none	STRG.4146.4	1	STRG.4146.1	1
scaffold_17	skipped_exon	8541916	8543124	+	asmbl_18121	none	STRG.20458.2,blat.proc3829881.chain_1288	2	STRG.20458.1,STRG.20458.3,blat.proc3829881.chain_1287	3
scaffold_13	alt_donor	8806814	8806815	-	asmbl_9943,asmbl_9945,asmbl_9947	none	blat.proc3829895.chain_940,blat.proc3829895.chain_942,blat.proc3829895.chain_943	3	blat.proc3829895.chain_941,blat.proc3829895.chain_944	2
scaffold_8	alt_donor	5856524	5856525	+	asmbl_51896	none	STRG.9989.3,Trinity_GG_5569_c0_g1_i1,blat.proc3829875.chain_2500	3	STRG.9989.1,STRG.9989.2,STRG.9989.4,Trinity_GG_5569_c0_g1_i2,Trinity_GG_5569_c0_g1_i3,Trinity_GG_5569_c0_g1_i4,blat.proc3829875.chain_2499,blat.proc3829875.chain_2501,blat.proc3829875.chain_2502	9
scaffold_10	alt_donor	557665	557666	-	asmbl_2885,asmbl_2887	none	STRG.11928.1,Trinity_GG_23640_c0_g1_i2,blat.proc3829893.chain_356,blat.proc3829893.chain_358	4	STRG.11928.2	1
scaffold_16	spliced_intron	5754391	5755434	+	asmbl_17015,asmbl_17017	none	STRG.19307.1,blat.proc3829881.chain_159,blat.proc3829881.chain_160	3	STRG.19307.2,Trinity_GG_10568_c0_g1_i1,Trinity_GG_10568_c0_g1_i5,blat.proc3829881.chain_157,blat.proc3829881.chain_158	5
scaffold_23	ends_in_intron	7876028	7876028	-	asmbl_31769	none	blat.proc3829899.chain_3180	1	STRG.26073.2,blat.proc3829899.chain_3179	2
scaffold_12	retained_intron	7974105	7974222	+	asmbl_8772	none	STRG.14847.3	1	STRG.14847.1,blat.proc3829877.chain_3357,blat.proc3829877.chain_3358,blat.proc3829877.chain_3360	4
scaffold_21	ends_in_intron	4970020	4970020	+	asmbl_28565	none	Trinity_GG_13318_c0_g1_i2,blat.proc3829883.chain_1181	2	STRG.24026.2	1
scaffold_12	retained_intron	14100589	14100679	-	asmbl_8104	none	Trinity_GG_25544_c0_g1_i1,blat.proc3829893.chain_3672	2	STRG.15222.1	1
scaffold_5	starts_in_intron	12556539	12556539	-	asmbl_45849	none	Trinity_GG_20661_c0_g1_i2,blat.proc3829889.chain_2573	2	STRG.6484.1,Trinity_GG_20661_c0_g1_i3,blat.proc3829889.chain_2574	3
scaffold_1	spliced_intron	20460149	20460202	+	asmbl_2625	none	STRG.1397.4	1	STRG.1397.1,Trinity_GG_824_c1_g1_i1	2
scaffold_28	starts_in_intron	1021367	1021367	+	asmbl_37994	none	blat.proc3829885.chain_2413	1	STRG.29302.1,blat.proc3829885.chain_2414	2
scaffold_14	ends_in_intron	326751	326751	-	asmbl_12806	none	STRG.16713.3	1	STRG.16713.1,STRG.16713.2,Trinity_GG_26365_c0_g1_i2,blat.proc3829895.chain_1417	4
scaffold_6	alternate_exon	5430341	5433751	+	asmbl_46888	none	STRG.7507.2,blat.proc3829873.chain_3620	2	STRG.7507.3,Trinity_GG_4108_c0_g1_i2,Trinity_GG_4108_c0_g1_i5,blat.proc3829873.chain_3621,blat.proc3829873.chain_3624	5
scaffold_10	alternate_exon	9497391	9497406	+	asmbl_4668	none	Trinity_GG_6996_c0_g1_i1,blat.proc3829877.chain_1251	2	STRG.12686.1	1
scaffold_12	alt_acceptor	4756157	4756158	-	asmbl_7574,asmbl_7575,asmbl_7576	none	STRG.14641.2,STRG.14641.3,STRG.14641.4,blat.proc3829893.chain_2975,blat.proc3829893.chain_2976	5	STRG.14641.1	1
scaffold_11	alt_donor	8597285	8597286	+	asmbl_5774	none	STRG.13863.3	1	STRG.13863.1,STRG.13863.2,Trinity_GG_7654_c0_g1_i1,Trinity_GG_7654_c0_g1_i2,Trinity_GG_7654_c0_g1_i7,blat.proc3829877.chain_2375,blat.proc3829877.chain_2376,blat.proc3829877.chain_2378,blat.proc3829877.chain_2379	9
scaffold_5	alternate_exon	11544608	11544767	+	asmbl_44416	none	STRG.6409.1,blat.proc3829873.chain_2545	2	STRG.6409.2	1
scaffold_20	alternate_exon	5948290	5952670	-	asmbl_26722	none	STRG.23191.1,blat.proc3829899.chain_161	2	STRG.23191.2,Trinity_GG_29917_c1_g1_i1,blat.proc3829899.chain_157,blat.proc3829899.chain_164	4
scaffold_8	starts_in_intron	18421184	18421184	+	asmbl_52542	none	STRG.10733.2	1	STRG.10733.1,blat.proc3829875.chain_3214,blat.proc3829875.chain_3215	3
scaffold_7	spliced_intron	3957526	3957770	-	asmbl_49651,asmbl_49653	none	STRG.8779.1,blat.proc3829891.chain_1076,blat.proc3829891.chain_1077	3	Trinity_GG_21990_c1_g1_i1,blat.proc3829891.chain_1078	2
scaffold_6	alt_acceptor	12621325	12621326	-	asmbl_48766	none	STRG.8011.1,Trinity_GG_21569_c0_g1_i3,blat.proc3829891.chain_310	3	Trinity_GG_21569_c0_g1_i2,blat.proc3829891.chain_312	2
scaffold_13	ends_in_intron	2857893	2857893	-	asmbl_9442	none	blat.proc3829895.chain_351	1	STRG.15575.1,blat.proc3829895.chain_352,blat.proc3829895.chain_353,blat.proc3829895.chain_354	4
scaffold_11	spliced_intron	8099585	8099683	+	asmbl_5686,asmbl_5687,asmbl_5688,asmbl_5689,asmbl_5690,asmbl_5692	none	STRG.13810.1,STRG.13810.2,STRG.13810.3,STRG.13810.4,Trinity_GG_7614_c0_g1_i1,Trinity_GG_7614_c0_g1_i2,Trinity_GG_7614_c0_g1_i3,Trinity_GG_7614_c0_g1_i4,Trinity_GG_7614_c0_g1_i6,blat.proc3829877.chain_2292,blat.proc3829877.chain_2293,blat.proc3829877.chain_2294,blat.proc3829877.chain_2295,blat.proc3829877.chain_2296	14	Trinity_GG_7614_c0_g1_i5,blat.proc3829877.chain_2297	2
scaffold_16	alternate_exon	14546156	14550753	-	asmbl_16641	none	STRG.19822.3,blat.proc3829897.chain_787,blat.proc3829897.chain_788,blat.proc3829897.chain_789	4	STRG.19822.4	1
scaffold_17	retained_exon	14349636	14350040	-	asmbl_19474	none	STRG.20903.2,blat.proc3829897.chain_1805	2	STRG.20903.1,blat.proc3829897.chain_1803	2
scaffold_6	spliced_intron	8460449	8460563	+	asmbl_47062,asmbl_47063,asmbl_47064	none	STRG.7708.2,STRG.7708.3,STRG.7708.4,blat.proc3829875.chain_72	4	STRG.7708.1,blat.proc3829875.chain_73	2
scaffold_20	alt_acceptor	2113682	2113683	+	asmbl_25628	none	STRG.22938.1,blat.proc3829883.chain_79	2	STRG.22938.2	1
scaffold_9	starts_in_intron	5138032	5138032	-	asmbl_54950	none	STRG.11081.3,blat.proc3829891.chain_3176	2	STRG.11081.1,STRG.11081.2,blat.proc3829891.chain_3174,blat.proc3829891.chain_3175	4
scaffold_10	starts_in_intron	8492455	8492455	-	asmbl_3508	none	STRG.12599.2	1	STRG.12599.1,Trinity_GG_24053_c0_g1_i1,blat.proc3829893.chain_1098,blat.proc3829893.chain_1099	4
scaffold_8	retained_intron	10239564	10239921	+	asmbl_52150	none	STRG.10282.3,Trinity_GG_5715_c0_g1_i3,blat.proc3829875.chain_2794	3	STRG.10282.1,blat.proc3829875.chain_2790,blat.proc3829875.chain_2791	3
scaffold_12	ends_in_intron	14266104	14266104	+	asmbl_9046	none	STRG.15250.2,blat.proc3829877.chain_3686	2	STRG.15250.1,blat.proc3829877.chain_3683,blat.proc3829877.chain_3685	3
scaffold_3	skipped_exon	8532827	8533627	+	asmbl_40176	none	STRG.3420.2	1	STRG.3420.1	1
scaffold_5	retained_intron	18561081	18561149	+	asmbl_44925	none	Trinity_GG_3847_c0_g1_i4,blat.proc3829873.chain_3145	2	STRG.6978.5,Trinity_GG_3847_c0_g1_i8,blat.proc3829873.chain_3146	3
scaffold_12	retained_intron	5636130	5636448	-	asmbl_7648	none	blat.proc3829893.chain_3065	1	STRG.14701.2,blat.proc3829893.chain_3064	2
scaffold_14	alt_donor	11689112	11689113	-	asmbl_13508,asmbl_13510	none	STRG.17500.1,blat.proc3829895.chain_2223,blat.proc3829895.chain_2224	3	STRG.17500.2,blat.proc3829895.chain_2222,blat.proc3829895.chain_2225	3
scaffold_12	alt_acceptor	976555	976556	-	asmbl_7424	none	STRG.14425.4	1	STRG.14425.1,STRG.14425.2,STRG.14425.3,blat.proc3829893.chain_2838,blat.proc3829893.chain_2839,blat.proc3829893.chain_2840	6
scaffold_11	alt_donor	3024461	3024462	+	asmbl_5356,asmbl_5357	none	STRG.13420.1,STRG.13420.2,blat.proc3829877.chain_1818,blat.proc3829877.chain_1819	4	STRG.13420.3,blat.proc3829877.chain_1821	2
scaffold_19	alt_acceptor	12492159	12492160	+	asmbl_22616,asmbl_22621	none	STRG.22568.2,STRG.22568.6,blat.proc3829881.chain_3535	3	STRG.22568.1,STRG.22568.4,STRG.22568.5,blat.proc3829881.chain_3533,blat.proc3829881.chain_3536,blat.proc3829881.chain_3537,blat.proc3829881.chain_3538	7
scaffold_6	ends_in_intron	854257	854257	-	asmbl_48021	none	Trinity_GG_21014_c0_g2_i1	1	STRG.7143.1,STRG.7143.3,STRG.7143.4,blat.proc3829889.chain_3139,blat.proc3829889.chain_3140	5
scaffold_1	ends_in_intron	850047	850047	+	asmbl_1414,asmbl_1417	none	STRG.41.5,blat.proc3829871.chain_51,blat.proc3829871.chain_53	3	STRG.41.3,STRG.41.4	2
scaffold_3	skipped_exon	6170797	6171815	-	asmbl_38857,asmbl_38858	none	blat.proc3829887.chain_2944,blat.proc3829887.chain_2946	2	blat.proc3829887.chain_2941,blat.proc3829887.chain_2942,blat.proc3829887.chain_2945	3
scaffold_7	spliced_intron	18615578	18615841	-	asmbl_50304,asmbl_50306	none	STRG.9671.2,blat.proc3829891.chain_1915	2	STRG.9671.1,blat.proc3829891.chain_1916	2
scaffold_11	spliced_intron	14532250	14532588	+	asmbl_6070,asmbl_6071	none	STRG.14239.4,blat.proc3829877.chain_2743	2	blat.proc3829877.chain_2748	1
scaffold_18	retained_intron	9259618	9260058	-	asmbl_20096	none	Trinity_GG_29070_c0_g1_i3,blat.proc3829897.chain_2413	2	STRG.21559.1,STRG.21559.2,STRG.21559.3,STRG.21559.4,Trinity_GG_29070_c0_g1_i2,Trinity_GG_29070_c0_g1_i5,blat.proc3829897.chain_2410,blat.proc3829897.chain_2411	8
scaffold_14	alternate_exon	2477759	2477798	-	asmbl_12944	none	STRG.16844.2	1	STRG.16844.1,Trinity_GG_26444_c0_g1_i2,blat.proc3829895.chain_1541	3
scaffold_10	spliced_intron	6869034	6869156	-	asmbl_3423,asmbl_3424,asmbl_3426,asmbl_3427,asmbl_3428	none	STRG.12505.1,blat.proc3829893.chain_991,blat.proc3829893.chain_994,blat.proc3829893.chain_996,blat.proc3829893.chain_997,blat.proc3829893.chain_998,blat.proc3829893.chain_999	7	blat.proc3829893.chain_990	1
scaffold_14	retained_exon	3173132	3173282	-	asmbl_12978	none	STRG.16894.2,blat.proc3829895.chain_1634	2	STRG.16894.1,blat.proc3829895.chain_1632	2
scaffold_17	alternate_exon	9452763	9453669	+	asmbl_18207,asmbl_18213	none	STRG.20557.3,STRG.20557.4,Trinity_GG_11275_c0_g1_i7,blat.proc3829881.chain_1395	4	STRG.20557.1,Trinity_GG_11275_c0_g1_i11,Trinity_GG_11275_c0_g1_i4,Trinity_GG_11275_c0_g1_i8,blat.proc3829881.chain_1391,blat.proc3829881.chain_1392,blat.proc3829881.chain_1394	7
scaffold_8	retained_intron	6161100	6161201	-	asmbl_52859,asmbl_52860	none	blat.proc3829891.chain_2215,blat.proc3829891.chain_2217	2	STRG.10012.1,STRG.10012.3,Trinity_GG_22628_c0_g1_i1,blat.proc3829891.chain_2213,blat.proc3829891.chain_2214,blat.proc3829891.chain_2216,blat.proc3829891.chain_2218	7
scaffold_9	alt_acceptor	10974996	10974997	+	asmbl_54305	none	STRG.11395.1,Trinity_GG_6317_c0_g1_i2,blat.proc3829877.chain_91	3	blat.proc3829877.chain_90	1
scaffold_9	starts_in_intron	3846996	3846996	-	asmbl_54908	none	Trinity_GG_23088_c0_g1_i1	1	STRG.10995.1,blat.proc3829891.chain_3112	2
scaffold_7	retained_intron	12452785	12453235	-	asmbl_50039,asmbl_50040,asmbl_50042	none	STRG.9342.2,blat.proc3829891.chain_1605,blat.proc3829891.chain_1608,blat.proc3829891.chain_1611	4	STRG.9342.1,Trinity_GG_22282_c1_g1_i7,Trinity_GG_22282_c1_g1_i9,blat.proc3829891.chain_1604,blat.proc3829891.chain_1606,blat.proc3829891.chain_1607,blat.proc3829891.chain_1614	7
scaffold_8	spliced_intron	7805215	7805311	-	asmbl_52915,asmbl_52916,asmbl_52919	none	STRG.10090.1,blat.proc3829891.chain_2143,blat.proc3829891.chain_2145,blat.proc3829891.chain_2147	4	blat.proc3829891.chain_2144	1
scaffold_7	alt_acceptor	18615646	18615647	-	asmbl_50305	none	blat.proc3829891.chain_1918	1	STRG.9671.2,blat.proc3829891.chain_1915	2
scaffold_6	ends_in_intron	4991542	4991542	+	asmbl_46843	none	STRG.7466.2,blat.proc3829873.chain_3545	2	STRG.7466.1,STRG.7466.3,blat.proc3829873.chain_3544	3
scaffold_16	skipped_exon	14544204	14546155	-	asmbl_16641	none	STRG.19822.3	1	STRG.19822.2	1
scaffold_3	retained_exon	1758041	1758082	+	asmbl_39824,asmbl_39826,asmbl_39827,asmbl_39828	none	STRG.2991.1,blat.proc3829871.chain_3179,blat.proc3829871.chain_3180,blat.proc3829871.chain_3181,blat.proc3829871.chain_3184,blat.proc3829871.chain_3185	6	STRG.2991.2	1
scaffold_15	alternate_exon	15345685	15345817	+	asmbl_14704	none	STRG.18908.1	1	STRG.18908.4,Trinity_GG_10364_c0_g1_i1,blat.proc3829879.chain_3494	3
scaffold_27	retained_intron	4004657	4005068	+	asmbl_36205,asmbl_36208,asmbl_36212	none	STRG.28848.3,Trinity_GG_15970_c0_g1_i5,blat.proc3829885.chain_1937,blat.proc3829885.chain_1939	4	STRG.28848.2,blat.proc3829885.chain_1935,blat.proc3829885.chain_1938	3
scaffold_28	retained_intron	2721160	2721312	+	asmbl_38101,asmbl_38103,asmbl_38104,asmbl_38105	none	STRG.29438.1,STRG.29438.3,blat.proc3829885.chain_2562,blat.proc3829885.chain_2564,blat.proc3829885.chain_2565	5	STRG.29438.2,blat.proc3829885.chain_2563	2
scaffold_1	spliced_intron	18487756	18487955	-	asmbl_1106,asmbl_1107,asmbl_1108,asmbl_1110,asmbl_1111,asmbl_1113	none	STRG.1300.2,STRG.1300.3,STRG.1300.4,STRG.1300.5,blat.proc3829887.chain_1208,blat.proc3829887.chain_1209,blat.proc3829887.chain_1210,blat.proc3829887.chain_1211,blat.proc3829887.chain_1212	9	Trinity_GG_17723_c1_g1_i1,blat.proc3829887.chain_1213	2
scaffold_22	alternate_exon	232031	232213	-	asmbl_29836	none	STRG.24671.2,Trinity_GG_30815_c0_g1_i5,blat.proc3829899.chain_1815	3	STRG.24671.1,STRG.24671.3,Trinity_GG_30815_c0_g1_i1,Trinity_GG_30815_c0_g1_i2,blat.proc3829899.chain_1813,blat.proc3829899.chain_1814	6
scaffold_23	spliced_intron	5182962	5183052	-	asmbl_31616	none	STRG.25878.2	1	STRG.25878.1,blat.proc3829899.chain_2993	2
scaffold_18	spliced_intron	1624835	1624863	-	asmbl_19664	none	blat.proc3829897.chain_1836	1	Trinity_GG_28759_c0_g1_i1	1
scaffold_6	retained_exon	12520880	12520973	-	asmbl_48749,asmbl_48753	none	STRG.8002.2,blat.proc3829891.chain_300	2	STRG.8002.3	1
scaffold_8	spliced_intron	12625677	12626425	-	asmbl_53217	none	STRG.10429.2	1	blat.proc3829891.chain_2559,blat.proc3829891.chain_2560	2
scaffold_10	starts_in_intron	17352752	17352752	+	asmbl_5042	none	STRG.13173.4	1	STRG.13173.1	1
scaffold_8	retained_intron	1207989	1208036	-	asmbl_52692,asmbl_52693	none	STRG.9740.2,STRG.9740.3	2	STRG.9740.1	1
scaffold_13	starts_in_intron	740295	740295	+	asmbl_10484	none	Trinity_GG_8496_c0_g1_i2,blat.proc3829879.chain_132	2	STRG.15446.1,STRG.15446.2,STRG.15446.3,blat.proc3829879.chain_131,blat.proc3829879.chain_133	5
scaffold_7	retained_intron	6042028	6042598	-	asmbl_49722,asmbl_49723,asmbl_49724,asmbl_49726	none	STRG.8899.1,STRG.8899.2,STRG.8899.3,STRG.8899.5,Trinity_GG_22045_c0_g1_i2	5	STRG.8899.4	1
scaffold_8	retained_intron	10059073	10059152	-	asmbl_53097	none	blat.proc3829891.chain_2382	1	STRG.10258.1,STRG.10258.2,blat.proc3829891.chain_2380,blat.proc3829891.chain_2381	4
scaffold_1	starts_in_intron	12913908	12913908	+	asmbl_2260	none	STRG.919.2	1	STRG.919.1,blat.proc3829871.chain_974,blat.proc3829871.chain_976	3
scaffold_434	starts_in_intron	2068	2068	-	asmbl_43680	none	blat.proc3829901.chain_3367	1	STRG.30301.1,Trinity_GG_34004_c0_g1_i2,blat.proc3829901.chain_3366	3
scaffold_7	spliced_intron	18619948	18620034	-	asmbl_50302,asmbl_50304,asmbl_50305,asmbl_50306	none	STRG.9671.1,STRG.9671.2,blat.proc3829891.chain_1915,blat.proc3829891.chain_1916,blat.proc3829891.chain_1918	5	Trinity_GG_22452_c0_g1_i4,blat.proc3829891.chain_1917	2
scaffold_8	spliced_intron	9885234	9885406	+	asmbl_52118,asmbl_52119	none	STRG.10229.1,STRG.10229.2,Trinity_GG_5690_c0_g1_i4,blat.proc3829875.chain_2741	4	blat.proc3829875.chain_2744	1
scaffold_3	alt_acceptor	5253767	5253768	+	asmbl_40027	none	STRG.3210.2	1	STRG.3210.1,Trinity_GG_1818_c1_g1_i1,blat.proc3829871.chain_3406	3
scaffold_2	alternate_exon	8055710	8055818	-	asmbl_23326	none	STRG.2095.4,blat.proc3829887.chain_2006	2	STRG.2095.3,Trinity_GG_18188_c1_g1_i1	2
scaffold_16	alt_donor	1878653	1878654	+	asmbl_16893	none	STRG.19097.2	1	STRG.19097.1	1
scaffold_4	spliced_intron	13072234	13072389	-	asmbl_41709	none	STRG.4956.1,blat.proc3829889.chain_1006	2	blat.proc3829889.chain_1005	1
scaffold_5	skipped_exon	9711452	9711983	+	asmbl_44298	none	STRG.6273.1,blat.proc3829873.chain_2437	2	STRG.6273.2,blat.proc3829873.chain_2439	2
scaffold_2	retained_intron	6679470	6679625	-	asmbl_23248	none	STRG.2026.1,Trinity_GG_18149_c0_g1_i3,blat.proc3829887.chain_1939	3	STRG.2026.3,Trinity_GG_18149_c0_g1_i5,blat.proc3829887.chain_1938	3
scaffold_4	retained_intron	17471150	17471253	-	asmbl_42018	none	STRG.5333.1,Trinity_GG_19954_c0_g1_i2,blat.proc3829889.chain_1322	3	STRG.5333.2,Trinity_GG_19954_c0_g1_i1,blat.proc3829889.chain_1321	3
scaffold_7	alt_donor	5927708	5927709	+	asmbl_50713,asmbl_50714	none	STRG.8891.1,Trinity_GG_4833_c0_g1_i1,Trinity_GG_4833_c0_g1_i4,blat.proc3829875.chain_1203,blat.proc3829875.chain_1204	5	blat.proc3829875.chain_1205	1
scaffold_23	retained_intron	2127756	2128017	-	asmbl_31410	none	Trinity_GG_31355_c0_g1_i4,blat.proc3829899.chain_2761	2	STRG.25661.1,STRG.25661.2,Trinity_GG_31355_c0_g1_i1,Trinity_GG_31355_c0_g1_i2,blat.proc3829899.chain_2759,blat.proc3829899.chain_2760	6
scaffold_21	spliced_intron	5138274	5138792	-	asmbl_27634	none	STRG.24046.4	1	STRG.24046.1,STRG.24046.7	2
scaffold_6	spliced_intron	12999352	12999538	-	asmbl_48800,asmbl_48802	none	STRG.8061.6,Trinity_GG_21547_c0_g1_i18,Trinity_GG_21547_c0_g1_i2,blat.proc3829891.chain_265,blat.proc3829891.chain_267	5	STRG.8061.7,Trinity_GG_21547_c0_g1_i11,Trinity_GG_21547_c0_g1_i16,blat.proc3829891.chain_268,blat.proc3829891.chain_270	5
scaffold_5	starts_in_intron	6012110	6012110	-	asmbl_45466	none	blat.proc3829889.chain_2118	1	STRG.6011.1,blat.proc3829889.chain_2115,blat.proc3829889.chain_2117	3
scaffold_16	retained_intron	10449577	10449822	+	asmbl_17337,asmbl_17341	none	Trinity_GG_10708_c0_g1_i1,blat.proc3829881.chain_424,blat.proc3829881.chain_425	3	STRG.19602.1,STRG.19602.2,STRG.19602.3,STRG.19602.4,STRG.19602.5,Trinity_GG_10708_c0_g1_i3,blat.proc3829881.chain_423,blat.proc3829881.chain_426	8
scaffold_6	alternate_exon	15103151	15103261	-	asmbl_48991	none	STRG.8268.1,blat.proc3829891.chain_565	2	STRG.8268.2	1
scaffold_14	alt_acceptor	9600478	9600479	+	asmbl_12275	none	STRG.17334.2	1	STRG.17334.1,blat.proc3829879.chain_2022	2
scaffold_5	spliced_intron	14022515	14022662	+	asmbl_44563	none	STRG.6600.2,Trinity_GG_3557_c0_g1_i2,blat.proc3829873.chain_2660	3	STRG.6600.1,Trinity_GG_3557_c0_g1_i1,blat.proc3829873.chain_2659	3
scaffold_16	ends_in_intron	5936066	5936066	+	asmbl_17030	none	Trinity_GG_10536_c0_g1_i1	1	STRG.19315.1,Trinity_GG_10536_c0_g1_i2,blat.proc3829881.chain_101	3
scaffold_14	spliced_intron	405268	405642	+	asmbl_11723,asmbl_11725,asmbl_11727,asmbl_11728	none	STRG.16722.1,STRG.16722.2,Trinity_GG_9219_c0_g1_i3,blat.proc3829879.chain_1467,blat.proc3829879.chain_1469,blat.proc3829879.chain_1474	6	STRG.16722.4,STRG.16722.6,STRG.16722.7,Trinity_GG_9219_c0_g1_i17,Trinity_GG_9219_c0_g1_i6,blat.proc3829879.chain_1465,blat.proc3829879.chain_1472	7
scaffold_18	spliced_intron	7867463	7867988	+	asmbl_20826	none	STRG.21477.5,blat.proc3829881.chain_2470	2	STRG.21477.4,blat.proc3829881.chain_2467	2
scaffold_20	alt_acceptor	8208346	8208347	-	asmbl_26896	none	STRG.23356.1	1	blat.proc3829899.chain_358	1
scaffold_14	alternate_exon	13212834	13213071	+	asmbl_12441,asmbl_12443,asmbl_12444	none	STRG.17599.2,STRG.17599.3,STRG.17599.4	3	STRG.17599.1	1
scaffold_20	retained_intron	10249203	10249289	-	asmbl_27022	none	blat.proc3829899.chain_557	1	STRG.23558.1,blat.proc3829899.chain_558	2
scaffold_24	starts_in_intron	1909728	1909728	-	asmbl_32737	none	blat.proc3829899.chain_3438	1	blat.proc3829899.chain_3439	1
scaffold_9	alt_donor	4953282	4953283	-	asmbl_54942	none	STRG.11061.1,blat.proc3829891.chain_3213	2	STRG.11061.3	1
scaffold_20	skipped_exon	9532067	9533451	+	asmbl_26016	none	STRG.23480.2,blat.proc3829883.chain_576	2	STRG.23480.1,blat.proc3829883.chain_580	2
scaffold_19	spliced_intron	12482434	12483861	-	asmbl_21710	none	STRG.22566.1,blat.proc3829897.chain_3296	2	Trinity_GG_29573_c0_g1_i1,Trinity_GG_29573_c0_g1_i5,blat.proc3829897.chain_3297,blat.proc3829897.chain_3298	4
scaffold_10	alt_acceptor	3065944	3065945	-	asmbl_3070,asmbl_3073	none	STRG.12119.2,blat.proc3829893.chain_570,blat.proc3829893.chain_571	3	STRG.12119.1,Trinity_GG_23763_c0_g1_i2,blat.proc3829893.chain_569	3
scaffold_26	alt_acceptor	3338979	3338980	-	asmbl_34758	none	STRG.28005.1	1	STRG.28005.2	1
scaffold_19	spliced_intron	3559309	3561160	+	asmbl_22130	none	STRG.22033.2	1	STRG.22033.3,STRG.22033.4,Trinity_GG_12191_c0_g1_i2,Trinity_GG_12191_c1_g1_i1,Trinity_GG_12191_c2_g1_i1,blat.proc3829881.chain_2992,blat.proc3829881.chain_2993,blat.proc3829881.chain_2997,blat.proc3829881.chain_2998	9
scaffold_2	alt_donor	10170274	10170275	-	asmbl_23420	none	STRG.2206.2,Trinity_GG_18253_c1_g1_i5,blat.proc3829887.chain_2121	3	STRG.2206.3	1
scaffold_19	skipped_exon	6407454	6408818	-	asmbl_21425	none	blat.proc3829897.chain_2842	1	STRG.22157.3,blat.proc3829897.chain_2844	2
scaffold_22	alternate_exon	9715517	9715541	+	asmbl_29597	none	STRG.25289.1,blat.proc3829883.chain_2270	2	blat.proc3829883.chain_2292	1
scaffold_2	alt_donor	19771832	19771833	+	asmbl_25318,asmbl_25320,asmbl_25321	none	STRG.2825.1,STRG.2825.2,blat.proc3829871.chain_2984,blat.proc3829871.chain_2985	4	blat.proc3829871.chain_2983	1
scaffold_19	starts_in_intron	6405189	6405189	+	asmbl_22212	none	Trinity_GG_12228_c0_g1_i2,blat.proc3829881.chain_3069	2	STRG.22156.1,Trinity_GG_12228_c0_g1_i1,blat.proc3829881.chain_3070	3
scaffold_8	spliced_intron	4393829	4393852	+	asmbl_51834	none	STRG.9917.2	1	STRG.9917.1,Trinity_GG_5534_c1_g1_i1,Trinity_GG_5534_c1_g1_i3,blat.proc3829875.chain_2449	4
scaffold_16	starts_in_intron	6203183	6203183	-	asmbl_16323	none	blat.proc3829897.chain_424	1	STRG.19375.1,STRG.19375.2	2
scaffold_24	retained_intron	6311156	6311448	+	asmbl_32312	none	Trinity_GG_14752_c0_g1_i3,blat.proc3829883.chain_3585	2	STRG.26676.1,STRG.26676.2,STRG.26676.4,blat.proc3829883.chain_3586,blat.proc3829883.chain_3587	5
scaffold_14	alt_acceptor	1070083	1070084	+	asmbl_11765,asmbl_11769,asmbl_11770,asmbl_11773	none	STRG.16754.3,blat.proc3829879.chain_1439,blat.proc3829879.chain_1440,blat.proc3829879.chain_1442	4	STRG.16754.5	1
scaffold_28	retained_intron	5730864	5730935	+	asmbl_38298	none	STRG.29685.1,Trinity_GG_16451_c0_g1_i1,blat.proc3829885.chain_2789	3	STRG.29685.2,Trinity_GG_16451_c0_g1_i2,blat.proc3829885.chain_2788	3
scaffold_8	spliced_intron	6027967	6028061	+	asmbl_51911,asmbl_51912,asmbl_51914,asmbl_51915	none	blat.proc3829875.chain_2551,blat.proc3829875.chain_2552,blat.proc3829875.chain_2553,blat.proc3829875.chain_2555	4	blat.proc3829875.chain_2557	1
scaffold_22	alternate_exon	11595657	11595891	-	asmbl_30457	none	blat.proc3829899.chain_2586	1	blat.proc3829899.chain_2585	1
scaffold_1	alt_acceptor	14075810	14075811	+	asmbl_2312	none	STRG.999.1,Trinity_GG_614_c0_g1_i3,blat.proc3829871.chain_1100	3	Trinity_GG_614_c0_g1_i4,blat.proc3829871.chain_1102	2
scaffold_22	alt_donor	7898489	7898490	-	asmbl_30202	none	STRG.25124.2,blat.proc3829899.chain_2228	2	STRG.25124.1	1
scaffold_15	spliced_intron	15409993	15410182	+	asmbl_14718,asmbl_14725	none	STRG.18921.3,STRG.18921.9,blat.proc3829879.chain_3517	3	blat.proc3829879.chain_3516	1
scaffold_5	retained_intron	18264036	18264289	+	asmbl_44895	none	Trinity_GG_3828_c0_g1_i3,blat.proc3829873.chain_3104	2	STRG.6959.1,STRG.6959.2,blat.proc3829873.chain_3103,blat.proc3829873.chain_3105,blat.proc3829873.chain_3107,blat.proc3829873.chain_3109	6
scaffold_2	retained_exon	15686608	15686682	+	asmbl_25090,asmbl_25091,asmbl_25093	none	STRG.2521.2,STRG.2521.3,Trinity_GG_1432_c0_g1_i2,Trinity_GG_1432_c0_g1_i4,blat.proc3829871.chain_2712,blat.proc3829871.chain_2713,blat.proc3829871.chain_2714	7	STRG.2521.1,Trinity_GG_1432_c0_g1_i1	2
scaffold_23	retained_intron	4449754	4450584	-	asmbl_31586,asmbl_31590	none	STRG.25842.4,Trinity_GG_31473_c0_g1_i2,Trinity_GG_31473_c0_g1_i5,Trinity_GG_31473_c0_g1_i6,blat.proc3829899.chain_2967,blat.proc3829899.chain_2968,blat.proc3829899.chain_2969	7	STRG.25842.1,Trinity_GG_31473_c0_g1_i4,blat.proc3829899.chain_2971	3
scaffold_7	ends_in_intron	12053810	12053810	+	asmbl_51086	none	blat.proc3829875.chain_1754	1	STRG.9298.1,STRG.9298.2,Trinity_GG_5159_c0_g1_i4,blat.proc3829875.chain_1755,blat.proc3829875.chain_1756,blat.proc3829875.chain_1757	6
scaffold_15	alt_donor	4117870	4117871	-	asmbl_15131	none	STRG.18141.2,blat.proc3829895.chain_2826	2	STRG.18141.4	1
scaffold_10	alt_acceptor	17394055	17394056	+	asmbl_5047,asmbl_5048	none	STRG.13179.1,STRG.13179.3	2	STRG.13179.2	1
scaffold_14	retained_intron	218317	218775	-	asmbl_12786,asmbl_12789,asmbl_12790	none	STRG.16705.1,STRG.16705.3,blat.proc3829895.chain_1395,blat.proc3829895.chain_1397,blat.proc3829895.chain_1399	5	STRG.16705.2,STRG.16705.4,blat.proc3829895.chain_1398	3
scaffold_12	alt_acceptor	8891822	8891823	+	asmbl_8800	none	STRG.14881.3,Trinity_GG_8240_c0_g1_i2,blat.proc3829877.chain_3412	3	STRG.14881.1,STRG.14881.2,Trinity_GG_8240_c0_g1_i1,blat.proc3829877.chain_3411	4
scaffold_14	ends_in_intron	1374732	1374732	-	asmbl_12858,asmbl_12859	none	STRG.16775.3,blat.proc3829895.chain_1487	2	STRG.16775.1,STRG.16775.2,blat.proc3829895.chain_1488,blat.proc3829895.chain_1489,blat.proc3829895.chain_1490	5
scaffold_5	ends_in_intron	8070839	8070839	+	asmbl_44184	none	STRG.6161.3,blat.proc3829873.chain_2256	2	STRG.6161.1,STRG.6161.2,blat.proc3829873.chain_2255	3
scaffold_8	alt_acceptor	11303795	11303796	+	asmbl_52209	none	STRG.10332.1,blat.proc3829875.chain_2846	2	STRG.10332.2,blat.proc3829875.chain_2847	2
scaffold_22	alternate_exon	7776827	7776873	+	asmbl_29509	none	STRG.25098.2,blat.proc3829883.chain_2171	2	STRG.25098.1	1
scaffold_20	alternate_exon	11479122	11479192	+	asmbl_26207,asmbl_26208,asmbl_26209,asmbl_26210,asmbl_26212	none	STRG.23639.1,STRG.23639.2,STRG.23639.3,Trinity_GG_13053_c0_g1_i2,Trinity_GG_13053_c0_g1_i3,Trinity_GG_13053_c0_g1_i4,blat.proc3829883.chain_714,blat.proc3829883.chain_715,blat.proc3829883.chain_716,blat.proc3829883.chain_717	10	STRG.23639.4	1
scaffold_11	retained_exon	11936634	11937722	-	asmbl_7019,asmbl_7022	none	STRG.14160.4,STRG.14160.5	2	STRG.14160.1	1
scaffold_14	alt_acceptor	3142235	3142236	+	asmbl_11876	none	STRG.16890.1,Trinity_GG_9291_c0_g1_i3,blat.proc3829879.chain_1610	3	Trinity_GG_9291_c0_g1_i2,blat.proc3829879.chain_1611	2
scaffold_4	skipped_exon	247323	249396	+	asmbl_42417	none	STRG.4120.1	1	STRG.4120.2	1
scaffold_2	alt_donor	4020399	4020400	-	asmbl_23063,asmbl_23065	none	STRG.1843.1,blat.proc3829887.chain_1706,blat.proc3829887.chain_1707	3	STRG.1843.2	1
scaffold_15	retained_exon	11141906	11141941	-	asmbl_15499,asmbl_15501,asmbl_15504	none	blat.proc3829895.chain_3283,blat.proc3829895.chain_3286,blat.proc3829895.chain_3289	3	blat.proc3829895.chain_3284,blat.proc3829895.chain_3285,blat.proc3829895.chain_3287,blat.proc3829895.chain_3288	4
scaffold_17	alt_donor	12090114	12090115	+	asmbl_18381	none	STRG.20727.2	1	STRG.20727.3	1
scaffold_15	ends_in_intron	12436003	12436003	+	asmbl_14512	none	blat.proc3829879.chain_3282	1	STRG.18688.1,blat.proc3829879.chain_3278,blat.proc3829879.chain_3280,blat.proc3829879.chain_3286,blat.proc3829879.chain_3291	5
scaffold_18	retained_intron	852034	852150	-	asmbl_19639	none	blat.proc3829897.chain_1917	1	STRG.21004.1,blat.proc3829897.chain_1915,blat.proc3829897.chain_1918	3
scaffold_28	alt_acceptor	2406078	2406079	+	asmbl_38057,asmbl_38058	none	STRG.29393.1,STRG.29393.2,blat.proc3829885.chain_2482,blat.proc3829885.chain_2484	4	STRG.29393.3,STRG.29393.4,blat.proc3829885.chain_2483,blat.proc3829885.chain_2485	4
scaffold_24	alt_donor	2513660	2513661	+	asmbl_32111,asmbl_32112,asmbl_32113	none	STRG.26452.2,STRG.26452.3,STRG.26452.4,blat.proc3829883.chain_3353,blat.proc3829883.chain_3354,blat.proc3829883.chain_3355	6	STRG.26452.1	1
scaffold_21	spliced_intron	10498503	10498605	-	asmbl_28072,asmbl_28076	none	STRG.24504.1,blat.proc3829899.chain_1649,blat.proc3829899.chain_1650	3	Trinity_GG_30713_c0_g1_i3,blat.proc3829899.chain_1646	2
scaffold_1	retained_intron	5741078	5741175	+	asmbl_1767	none	Trinity_GG_223_c0_g1_i6,blat.proc3829871.chain_374	2	STRG.382.2,blat.proc3829871.chain_369,blat.proc3829871.chain_370,blat.proc3829871.chain_371,blat.proc3829871.chain_373,blat.proc3829871.chain_375	6
scaffold_3	starts_in_intron	17781744	17781744	+	asmbl_40653,asmbl_40655	none	Trinity_GG_2236_c0_g1_i4,blat.proc3829873.chain_382,blat.proc3829873.chain_384	3	STRG.3993.1,STRG.3993.2,Trinity_GG_2236_c0_g1_i1,blat.proc3829873.chain_383	4
scaffold_5	retained_intron	108210	108423	-	asmbl_45142,asmbl_45144	none	STRG.5570.1,Trinity_GG_20162_c0_g1_i5	2	STRG.5570.2	1
scaffold_8	retained_intron	10793464	10793568	+	asmbl_52170	none	STRG.10300.1,blat.proc3829875.chain_2822	2	STRG.10300.3,blat.proc3829875.chain_2820	2
scaffold_15	skipped_exon	4757848	4758609	-	asmbl_15162	none	STRG.18179.2	1	STRG.18179.1,blat.proc3829895.chain_2882	2
scaffold_13	alt_acceptor	2334831	2334832	+	asmbl_10571,asmbl_10589,asmbl_10591	none	STRG.15543.4,STRG.15543.8,STRG.15543.9,blat.proc3829879.chain_175	4	STRG.15543.2,blat.proc3829879.chain_174	2
scaffold_8	spliced_intron	4299829	4300052	+	asmbl_51815	none	STRG.9902.1,blat.proc3829875.chain_2433	2	blat.proc3829875.chain_2431	1
scaffold_17	alternate_exon	8252883	8253752	+	asmbl_18089	none	STRG.20433.1,blat.proc3829881.chain_1191	2	blat.proc3829881.chain_1189	1
scaffold_12	alt_donor	14044947	14044948	-	asmbl_8091,asmbl_8092,asmbl_8096	none	STRG.15216.1,STRG.15216.3,STRG.15216.4,blat.proc3829893.chain_3658,blat.proc3829893.chain_3661	5	STRG.15216.2,STRG.15216.5,blat.proc3829893.chain_3659,blat.proc3829893.chain_3662	4
scaffold_1	spliced_intron	5739762	5739896	+	asmbl_1764,asmbl_1768,asmbl_1769,asmbl_1770,asmbl_1771	none	STRG.382.2,blat.proc3829871.chain_370,blat.proc3829871.chain_371,blat.proc3829871.chain_372,blat.proc3829871.chain_373,blat.proc3829871.chain_375	6	Trinity_GG_223_c1_g1_i1,blat.proc3829871.chain_377	2
scaffold_13	retained_intron	352039	352293	-	asmbl_9269,asmbl_9272	none	Trinity_GG_25667_c0_g1_i4,Trinity_GG_25667_c0_g1_i6,blat.proc3829895.chain_167,blat.proc3829895.chain_170	4	STRG.15424.1,Trinity_GG_25667_c0_g1_i10,Trinity_GG_25667_c0_g1_i5,Trinity_GG_25667_c0_g1_i7,Trinity_GG_25667_c0_g1_i8,blat.proc3829895.chain_168,blat.proc3829895.chain_169,blat.proc3829895.chain_171,blat.proc3829895.chain_172,blat.proc3829895.chain_173	10
scaffold_10	alt_donor	14699395	14699396	+	asmbl_4929	none	blat.proc3829877.chain_1501	1	STRG.13011.1,STRG.13011.2,blat.proc3829877.chain_1497,blat.proc3829877.chain_1498,blat.proc3829877.chain_1500	5
scaffold_1	alt_acceptor	4270588	4270589	+	asmbl_1658	none	STRG.259.2	1	STRG.259.1,STRG.259.3,blat.proc3829871.chain_321	3
scaffold_17	spliced_intron	8875826	8875983	+	asmbl_18164	none	STRG.20496.1,blat.proc3829881.chain_1304	2	STRG.20496.2,blat.proc3829881.chain_1303	2
scaffold_14	spliced_intron	8295304	8295419	-	asmbl_13267	none	blat.proc3829895.chain_1941	1	STRG.17236.1,blat.proc3829895.chain_1939,blat.proc3829895.chain_1940	3
scaffold_10	retained_intron	6076482	6078706	-	asmbl_3340,asmbl_3341,asmbl_3342	none	STRG.12437.2,STRG.12437.3,STRG.12437.5,Trinity_GG_23966_c0_g2_i1,blat.proc3829893.chain_926	5	blat.proc3829893.chain_919	1
scaffold_27	ends_in_intron	9870375	9870375	+	asmbl_36489	none	Trinity_GG_16173_c1_g1_i1	1	STRG.29194.1	1
scaffold_27	alt_acceptor	5802250	5802251	-	asmbl_36986	none	STRG.28961.2	1	STRG.28961.1,blat.proc3829901.chain_2119	2
scaffold_18	retained_intron	2758917	2759003	-	asmbl_19773,asmbl_19776	none	Trinity_GG_28855_c0_g1_i1,blat.proc3829897.chain_2032,blat.proc3829897.chain_2034	3	STRG.21125.1,STRG.21125.2,blat.proc3829897.chain_2033,blat.proc3829897.chain_2035	4
scaffold_8	retained_exon	11830678	11830719	+	asmbl_52261,asmbl_52263	none	STRG.10379.2,blat.proc3829875.chain_2918	2	STRG.10379.1	1
scaffold_14	spliced_intron	7480485	7480705	-	asmbl_13199	none	STRG.17176.3	1	STRG.17176.1,STRG.17176.2,Trinity_GG_26640_c1_g1_i1,blat.proc3829895.chain_1878,blat.proc3829895.chain_1880	5
scaffold_20	retained_intron	7910387	7910642	-	asmbl_26866	none	STRG.23330.1,Trinity_GG_30019_c0_g1_i2,blat.proc3829899.chain_342	3	STRG.23330.2,blat.proc3829899.chain_341	2
scaffold_5	spliced_intron	15764229	15764728	+	asmbl_44683	none	blat.proc3829873.chain_2881	1	blat.proc3829873.chain_2882	1
scaffold_13	spliced_intron	7655808	7655891	+	asmbl_11045,asmbl_11046,asmbl_11048,asmbl_11049	none	STRG.16039.1,blat.proc3829879.chain_775,blat.proc3829879.chain_779,blat.proc3829879.chain_780,blat.proc3829879.chain_781	5	blat.proc3829879.chain_778	1
scaffold_15	starts_in_intron	15166465	15166465	+	asmbl_14672	none	blat.proc3829879.chain_3389	1	STRG.18897.1,STRG.18897.2,blat.proc3829879.chain_3388	3
scaffold_5	starts_in_intron	18248178	18248178	+	asmbl_44882	none	STRG.6951.3,Trinity_GG_3817_c0_g1_i2,blat.proc3829873.chain_3085	3	STRG.6951.1,STRG.6951.2,blat.proc3829873.chain_3083,blat.proc3829873.chain_3084	4
scaffold_2	retained_intron	15263572	15263652	+	asmbl_25018	none	blat.proc3829871.chain_2553	1	STRG.2479.1,blat.proc3829871.chain_2555	2
scaffold_17	alt_donor	13844775	13844776	-	asmbl_19429	none	STRG.20849.2	1	STRG.20849.1	1
scaffold_17	retained_intron	1523950	1524129	+	asmbl_17741	none	STRG.19977.1,blat.proc3829881.chain_810	2	blat.proc3829881.chain_809	1
scaffold_5	spliced_intron	18255195	18255273	+	asmbl_44886	none	STRG.6952.1,Trinity_GG_3839_c0_g1_i2,blat.proc3829873.chain_3127	3	Trinity_GG_3839_c0_g1_i4,blat.proc3829873.chain_3129	2
scaffold_25	alt_acceptor	7318163	7318164	-	asmbl_34367	none	STRG.27557.1	1	Trinity_GG_32461_c0_g1_i3,blat.proc3829901.chain_882	2
scaffold_28	retained_intron	3037644	3038209	-	asmbl_37451	none	STRG.29487.1,Trinity_GG_33544_c0_g1_i2,blat.proc3829901.chain_2611	3	blat.proc3829901.chain_2612	1
scaffold_1	alternate_exon	5736826	5737218	+	asmbl_1764,asmbl_1768	none	STRG.382.2,blat.proc3829871.chain_372,blat.proc3829871.chain_373	3	blat.proc3829871.chain_371	1
scaffold_20	alternate_exon	5486136	5486277	-	asmbl_26682	none	STRG.23158.2,Trinity_GG_29929_c0_g1_i4,blat.proc3829899.chain_185	3	STRG.23158.1,blat.proc3829899.chain_183	2
scaffold_28	spliced_intron	2404241	2404447	+	asmbl_38058,asmbl_38059,asmbl_38060	none	STRG.29393.2,blat.proc3829885.chain_2483,blat.proc3829885.chain_2484,blat.proc3829885.chain_2485	4	STRG.29393.1,STRG.29393.3,STRG.29393.4,blat.proc3829885.chain_2482	4
scaffold_24	alt_donor	10668143	10668144	+	asmbl_32587	none	STRG.27005.1,blat.proc3829885.chain_124	2	STRG.27005.2,blat.proc3829885.chain_123	2
scaffold_14	alt_acceptor	917460	917461	+	asmbl_11754,asmbl_11755	none	STRG.16748.2,STRG.16748.3	2	STRG.16748.1,blat.proc3829879.chain_1453	2
scaffold_24	starts_in_intron	7635458	7635458	-	asmbl_33031	none	blat.proc3829901.chain_89	1	STRG.26784.1,STRG.26784.2,blat.proc3829901.chain_90	3
scaffold_17	alt_acceptor	10123553	10123554	+	asmbl_18304,asmbl_18306	none	STRG.20619.1,STRG.20619.2	2	STRG.20619.3	1
scaffold_18	alternate_exon	6439295	6440019	-	asmbl_19935	none	STRG.21361.1,blat.proc3829897.chain_2227	2	STRG.21361.2	1
scaffold_11	starts_in_intron	12071636	12071636	-	asmbl_7052,asmbl_7053	none	blat.proc3829893.chain_2542,blat.proc3829893.chain_2544	2	STRG.14117.2,blat.proc3829893.chain_2541	2
scaffold_26	alt_acceptor	8576980	8576981	+	asmbl_35706	none	STRG.28421.2,blat.proc3829885.chain_1471	2	STRG.28421.1,blat.proc3829885.chain_1470	2
scaffold_2	starts_in_intron	4130613	4130613	+	asmbl_24358,asmbl_24359	none	Trinity_GG_1003_c0_g1_i2,blat.proc3829871.chain_1835,blat.proc3829871.chain_1836	3	STRG.1855.1	1
scaffold_14	retained_intron	13897375	13897695	+	asmbl_12501	none	blat.proc3829879.chain_2353	1	STRG.17653.1,STRG.17653.2,STRG.17653.4,blat.proc3829879.chain_2349	4
scaffold_12	alt_acceptor	4213866	4213867	+	asmbl_8550,asmbl_8552	none	STRG.14588.3,blat.proc3829877.chain_3117	2	STRG.14588.1,STRG.14588.2,blat.proc3829877.chain_3115	3
scaffold_21	retained_intron	7367840	7367962	-	asmbl_27824,asmbl_27826	none	STRG.24244.2,blat.proc3829899.chain_1315,blat.proc3829899.chain_1316	3	STRG.24244.1,blat.proc3829899.chain_1314,blat.proc3829899.chain_1317	3
scaffold_4	starts_in_intron	17579640	17579640	+	asmbl_43403,asmbl_43404,asmbl_43405	none	STRG.5347.3,STRG.5347.4,STRG.5347.5	3	STRG.5347.1,STRG.5347.2	2
scaffold_9	starts_in_intron	5532503	5532503	+	asmbl_54037	none	Trinity_GG_6215_c0_g1_i1,blat.proc3829875.chain_3645	2	STRG.11121.1,STRG.11121.3,STRG.11121.4,Trinity_GG_6215_c0_g1_i5,blat.proc3829875.chain_3647	5
scaffold_13	spliced_intron	11601420	11601630	+	asmbl_11273,asmbl_11274,asmbl_11275,asmbl_11276,asmbl_11277,asmbl_11278,asmbl_11279	none	STRG.16295.1,STRG.16295.2,STRG.16295.5,blat.proc3829879.chain_1014,blat.proc3829879.chain_1015,blat.proc3829879.chain_1016,blat.proc3829879.chain_1018,blat.proc3829879.chain_1019,blat.proc3829879.chain_1020,blat.proc3829879.chain_1023	10	Trinity_GG_8948_c0_g1_i9,blat.proc3829879.chain_1021	2
scaffold_19	alt_donor	625386	625387	-	asmbl_21193,asmbl_21194	none	STRG.21833.2,STRG.21833.3	2	STRG.21833.1,blat.proc3829897.chain_2601	2
scaffold_7	alt_donor	18360174	18360175	-	asmbl_50283,asmbl_50284	none	STRG.9654.1,blat.proc3829891.chain_1905,blat.proc3829891.chain_1906	3	STRG.9654.2	1
scaffold_1	alt_acceptor	3287203	3287204	+	asmbl_1586	none	STRG.204.3,blat.proc3829871.chain_253	2	STRG.204.1,blat.proc3829871.chain_252	2
scaffold_4	ends_in_intron	17068749	17068749	+	asmbl_43371	none	Trinity_GG_2939_c0_g1_i2	1	STRG.5303.1,blat.proc3829873.chain_1577	2
scaffold_9	spliced_intron	11551049	11551499	-	asmbl_55258,asmbl_55261	none	STRG.11459.1,blat.proc3829891.chain_3588,blat.proc3829891.chain_3589	3	STRG.11459.2,blat.proc3829891.chain_3585,blat.proc3829891.chain_3587	3
scaffold_9	ends_in_intron	9603523	9603523	-	asmbl_55178	none	Trinity_GG_23259_c2_g1_i1,blat.proc3829891.chain_3423	2	STRG.11317.1,STRG.11317.2,Trinity_GG_23259_c0_g1_i1,blat.proc3829891.chain_3421	4
scaffold_20	retained_intron	8129408	8129479	+	asmbl_25901	none	STRG.23344.1,Trinity_GG_12816_c0_g1_i3,blat.proc3829883.chain_340	3	blat.proc3829883.chain_338	1
scaffold_6	alt_donor	10400148	10400149	-	asmbl_48637	none	STRG.7875.1,blat.proc3829891.chain_143	2	STRG.7875.2,blat.proc3829891.chain_144	2
scaffold_16	starts_in_intron	6118700	6118700	+	asmbl_17059	none	STRG.19331.3,blat.proc3829881.chain_190	2	STRG.19331.1,STRG.19331.2,blat.proc3829881.chain_187,blat.proc3829881.chain_188,blat.proc3829881.chain_189	5
scaffold_19	retained_intron	10791584	10791697	+	asmbl_22459	none	STRG.22407.1,Trinity_GG_12373_c0_g1_i1,blat.proc3829881.chain_3320	3	STRG.22407.2	1
scaffold_18	ends_in_intron	4768248	4768248	+	asmbl_20586	none	STRG.21260.4,blat.proc3829881.chain_2086	2	STRG.21260.1,STRG.21260.2,Trinity_GG_11674_c0_g1_i1,blat.proc3829881.chain_2085,blat.proc3829881.chain_2087,blat.proc3829881.chain_2088	6
scaffold_12	retained_exon	15679641	15679763	-	asmbl_8231,asmbl_8232,asmbl_8234,asmbl_8235,asmbl_8236	none	STRG.15344.1,STRG.15344.3,STRG.15344.4,STRG.15344.5,blat.proc3829895.chain_19,blat.proc3829895.chain_21,blat.proc3829895.chain_22	7	STRG.15344.2,blat.proc3829895.chain_20	2
scaffold_5	spliced_intron	15041706	15041804	-	asmbl_46021,asmbl_46022,asmbl_46024	none	STRG.6692.1,STRG.6692.2,STRG.6692.3,blat.proc3829889.chain_2739,blat.proc3829889.chain_2741,blat.proc3829889.chain_2745	6	Trinity_GG_20768_c0_g3_i2,blat.proc3829889.chain_2746	2
scaffold_9	retained_exon	645691	645735	+	asmbl_53762	none	STRG.10785.4	1	STRG.10785.3	1
scaffold_21	retained_intron	1654934	1655150	+	asmbl_28370	none	Trinity_GG_13211_c0_g1_i3,blat.proc3829883.chain_989	2	STRG.23807.1,Trinity_GG_13211_c0_g1_i2,Trinity_GG_13211_c0_g1_i6,Trinity_GG_13211_c0_g1_i7,blat.proc3829883.chain_988,blat.proc3829883.chain_990,blat.proc3829883.chain_992	7
scaffold_8	alt_donor	3615643	3615644	+	asmbl_51774	none	STRG.9854.2,blat.proc3829875.chain_2279	2	STRG.9854.3	1
scaffold_3	starts_in_intron	15867112	15867112	+	asmbl_40549	none	Trinity_GG_2180_c0_g1_i3,blat.proc3829873.chain_275	2	STRG.3863.1,blat.proc3829873.chain_276	2
scaffold_19	ends_in_intron	12986263	12986263	+	asmbl_22638	none	Trinity_GG_12506_c0_g1_i1,blat.proc3829881.chain_3569	2	Trinity_GG_12506_c0_g1_i5,blat.proc3829881.chain_3568	2
scaffold_8	retained_intron	6317858	6317977	-	asmbl_52869	none	Trinity_GG_22617_c0_g1_i4,blat.proc3829891.chain_2196	2	STRG.10031.1,blat.proc3829891.chain_2198	2
scaffold_6	spliced_intron	3778731	3778944	+	asmbl_46799	none	STRG.7368.1,blat.proc3829873.chain_3516	2	STRG.7368.2,STRG.7368.4,Trinity_GG_4054_c0_g1_i7,blat.proc3829873.chain_3517,blat.proc3829873.chain_3518,blat.proc3829873.chain_3519	6
scaffold_14	alt_donor	6450437	6450438	-	asmbl_13116,asmbl_13118	none	STRG.17077.1,Trinity_GG_26609_c0_g1_i3,blat.proc3829895.chain_1807,blat.proc3829895.chain_1808,blat.proc3829895.chain_1809	5	STRG.17077.2	1
scaffold_23	alt_donor	10938393	10938394	-	asmbl_31889,asmbl_31892	none	STRG.26279.1,STRG.26279.2	2	STRG.26279.3,blat.proc3829899.chain_3332,blat.proc3829899.chain_3333	3
scaffold_9	retained_exon	17743057	17743120	+	asmbl_54615,asmbl_54616,asmbl_54617,asmbl_54619	none	STRG.11853.1,STRG.11853.3,blat.proc3829877.chain_521,blat.proc3829877.chain_525,blat.proc3829877.chain_526,blat.proc3829877.chain_527	6	STRG.11853.2,blat.proc3829877.chain_522	2
scaffold_9	spliced_intron	2799140	2801078	+	asmbl_53848	none	blat.proc3829875.chain_3367	1	STRG.10912.1,Trinity_GG_6054_c0_g1_i2,blat.proc3829875.chain_3365,blat.proc3829875.chain_3372	4
scaffold_14	alternate_exon	8290330	8292208	-	asmbl_13263	none	STRG.17238.1,Trinity_GG_26679_c0_g1_i1,blat.proc3829895.chain_1938,blat.proc3829895.chain_1943	4	STRG.17238.2	1
scaffold_6	starts_in_intron	12027764	12027764	-	asmbl_48711	none	STRG.7972.2,blat.proc3829891.chain_240	2	STRG.7972.1,blat.proc3829891.chain_237,blat.proc3829891.chain_239	3
scaffold_5	retained_exon	7740676	7740966	+	asmbl_44167,asmbl_44168	none	STRG.6144.1,STRG.6144.2,blat.proc3829873.chain_2302	3	STRG.6144.3	1
scaffold_4	retained_intron	8619480	8619572	-	asmbl_41521	none	blat.proc3829889.chain_741	1	STRG.4679.1,blat.proc3829889.chain_739,blat.proc3829889.chain_740	3
scaffold_20	alt_donor	10057056	10057057	-	asmbl_27000	none	STRG.23535.1,blat.proc3829899.chain_546	2	STRG.23535.2,blat.proc3829899.chain_545	2
scaffold_24	alt_acceptor	9073114	9073115	+	asmbl_32494,asmbl_32502	none	STRG.26929.2,Trinity_GG_14897_c0_g1_i9,blat.proc3829885.chain_71	3	STRG.26929.1,Trinity_GG_14897_c0_g1_i2,Trinity_GG_14897_c0_g1_i6,Trinity_GG_14897_c0_g1_i8,blat.proc3829885.chain_73,blat.proc3829885.chain_74,blat.proc3829885.chain_77	7
scaffold_16	alt_acceptor	409376	409377	-	asmbl_16035	none	blat.proc3829897.chain_78	1	STRG.19020.1,blat.proc3829897.chain_76,blat.proc3829897.chain_77	3
scaffold_2	retained_intron	15265851	15265947	+	asmbl_25021,asmbl_25030	none	STRG.2480.2,blat.proc3829871.chain_2515,blat.proc3829871.chain_2523	3	STRG.2480.1,STRG.2480.3,blat.proc3829871.chain_2514,blat.proc3829871.chain_2516,blat.proc3829871.chain_2517,blat.proc3829871.chain_2518,blat.proc3829871.chain_2519,blat.proc3829871.chain_2520,blat.proc3829871.chain_2522	9
scaffold_2	retained_exon	14136505	14136572	-	asmbl_23573,asmbl_23575,asmbl_23577	none	STRG.2406.1,STRG.2406.3,blat.proc3829887.chain_2197,blat.proc3829887.chain_2198	4	blat.proc3829887.chain_2196	1
scaffold_13	retained_exon	9180704	9180801	-	asmbl_9965	none	STRG.16158.1,blat.proc3829895.chain_928	2	STRG.16158.2,blat.proc3829895.chain_927	2
scaffold_3	ends_in_intron	2208859	2208859	-	asmbl_38695	none	Trinity_GG_18671_c0_g1_i6,blat.proc3829887.chain_2820	2	STRG.3027.1,blat.proc3829887.chain_2821	2
scaffold_8	retained_exon	10484123	10484272	+	asmbl_52162	none	blat.proc3829875.chain_2784	1	STRG.10277.2,blat.proc3829875.chain_2785	2
scaffold_3	alt_acceptor	16072137	16072138	+	asmbl_40568	none	STRG.3888.2,blat.proc3829873.chain_287	2	STRG.3888.1,blat.proc3829873.chain_286	2
scaffold_26	alternate_exon	9040818	9040880	-	asmbl_35031	none	STRG.28450.2	1	STRG.28450.1,blat.proc3829901.chain_1587	2
scaffold_11	starts_in_intron	8431404	8431404	+	asmbl_5733,asmbl_5735	none	STRG.13849.3,Trinity_GG_7631_c0_g2_i2,Trinity_GG_7631_c0_g2_i4,blat.proc3829877.chain_2328,blat.proc3829877.chain_2329	5	STRG.13849.1,Trinity_GG_7631_c0_g2_i1,blat.proc3829877.chain_2331	3
scaffold_3	starts_in_intron	13986762	13986762	-	asmbl_39269	none	blat.proc3829887.chain_3524	1	STRG.3738.1,blat.proc3829887.chain_3523	2
scaffold_22	starts_in_intron	8290167	8290167	-	asmbl_30243	none	blat.proc3829899.chain_2259	1	STRG.25170.1,blat.proc3829899.chain_2258	2
scaffold_20	retained_intron	967146	967174	+	asmbl_25550	none	STRG.22792.1	1	STRG.22792.2	1
scaffold_18	alt_acceptor	7185331	7185332	+	asmbl_20744	none	STRG.21414.1,Trinity_GG_11822_c0_g1_i1,blat.proc3829881.chain_2373	3	STRG.21414.2,STRG.21414.3	2
scaffold_5	retained_exon	5738535	5738649	+	asmbl_44027	none	STRG.5984.4	1	blat.proc3829873.chain_2048	1
scaffold_18	retained_exon	8401326	8401453	+	asmbl_20861	none	STRG.21503.4	1	STRG.21503.1,blat.proc3829881.chain_2515	2
scaffold_13	skipped_exon	15511199	15512431	+	asmbl_11492,asmbl_11493	none	STRG.16580.2,STRG.16580.3	2	STRG.16580.1,STRG.16580.4,blat.proc3829879.chain_1334,blat.proc3829879.chain_1335	4
scaffold_8	ends_in_intron	10060035	10060035	-	asmbl_53096	none	Trinity_GG_22717_c0_g3_i1,blat.proc3829891.chain_2383	2	STRG.10258.1,STRG.10258.2,blat.proc3829891.chain_2380,blat.proc3829891.chain_2381	4
scaffold_4	alt_acceptor	8182949	8182950	-	asmbl_41495	none	STRG.4637.1,blat.proc3829889.chain_707	2	STRG.4637.2,blat.proc3829889.chain_708	2
scaffold_10	retained_intron	13471231	13471345	-	asmbl_3788,asmbl_3793	none	STRG.12931.1,Trinity_GG_24242_c0_g2_i3,blat.proc3829893.chain_1416,blat.proc3829893.chain_1419	4	STRG.12931.2,STRG.12931.3,STRG.12931.4,blat.proc3829893.chain_1417,blat.proc3829893.chain_1418	5
scaffold_6	starts_in_intron	11501448	11501448	+	asmbl_47276	none	Trinity_GG_4344_c0_g2_i2,blat.proc3829875.chain_311	2	STRG.7940.1,Trinity_GG_4344_c0_g2_i1,Trinity_GG_4344_c0_g2_i3,blat.proc3829875.chain_310,blat.proc3829875.chain_312,blat.proc3829875.chain_313	6
scaffold_19	alt_acceptor	11466823	11466824	-	asmbl_21601	none	STRG.22465.2	1	STRG.22465.1,blat.proc3829897.chain_3152	2
scaffold_27	alternate_exon	5678467	5678526	+	asmbl_36314,asmbl_36318	none	STRG.28956.1,blat.proc3829885.chain_1996,blat.proc3829885.chain_1998	3	STRG.28956.2,STRG.28956.3,STRG.28956.4,blat.proc3829885.chain_1994,blat.proc3829885.chain_1997,blat.proc3829885.chain_1999	6
scaffold_12	skipped_exon	14224107	14226458	+	asmbl_9038	none	STRG.15243.2	1	blat.proc3829877.chain_3639	1
scaffold_7	starts_in_intron	15269635	15269635	+	asmbl_51310	none	Trinity_GG_5290_c0_g1_i4,blat.proc3829875.chain_1983	2	STRG.9532.1,STRG.9532.2,STRG.9532.3,STRG.9532.4,STRG.9532.5,blat.proc3829875.chain_1981,blat.proc3829875.chain_1984,blat.proc3829875.chain_1985,blat.proc3829875.chain_1986,blat.proc3829875.chain_1987	10
scaffold_18	spliced_intron	7943323	7944083	-	asmbl_20024	none	STRG.21483.3,blat.proc3829897.chain_2326	2	STRG.21483.1,Trinity_GG_29025_c0_g1_i2,blat.proc3829897.chain_2325	3
scaffold_20	retained_intron	7206140	7206288	-	asmbl_26809	none	STRG.23272.2,blat.proc3829899.chain_290	2	STRG.23272.1,blat.proc3829899.chain_289	2
scaffold_9	alt_donor	5530705	5530706	+	asmbl_54036,asmbl_54038,asmbl_54039,asmbl_54040	none	STRG.11121.1,STRG.11121.2,STRG.11121.3,Trinity_GG_6215_c0_g1_i4,Trinity_GG_6215_c0_g1_i5,blat.proc3829875.chain_3647	6	STRG.11121.4,Trinity_GG_6215_c0_g1_i2,blat.proc3829875.chain_3648	3
scaffold_13	starts_in_intron	4601724	4601724	-	asmbl_9603,asmbl_9604	none	blat.proc3829895.chain_527,blat.proc3829895.chain_529	2	STRG.15781.1,STRG.15781.2,blat.proc3829895.chain_531,blat.proc3829895.chain_533	4
scaffold_1	retained_intron	20134536	20134559	-	asmbl_1169	none	Trinity_GG_17776_c0_g1_i1	1	STRG.1381.1	1
scaffold_8	ends_in_intron	18412998	18412998	-	asmbl_53546	none	STRG.10730.2,Trinity_GG_22986_c0_g1_i2,blat.proc3829891.chain_2927	3	STRG.10730.1,blat.proc3829891.chain_2926	2
scaffold_4	alternate_exon	5651380	5651422	-	asmbl_41356	none	Trinity_GG_19533_c0_g1_i2,blat.proc3829889.chain_602	2	STRG.4469.3,blat.proc3829889.chain_607	2
scaffold_8	retained_intron	9872480	9872652	-	asmbl_53057	none	blat.proc3829891.chain_2379	1	STRG.10226.2	1
scaffold_11	retained_exon	8398329	8398702	+	asmbl_5730	none	blat.proc3829877.chain_2344	1	STRG.13845.1,blat.proc3829877.chain_2345	2
scaffold_18	alt_acceptor	282107	282108	+	asmbl_20312,asmbl_20314	none	STRG.20973.1,STRG.20973.3,blat.proc3829881.chain_1822	3	STRG.20973.4,blat.proc3829881.chain_1823	2
scaffold_2	alt_acceptor	8059380	8059381	-	asmbl_23331	none	STRG.2094.3	1	STRG.2094.2,blat.proc3829887.chain_1997	2
scaffold_25	alternate_exon	5786576	5788129	+	asmbl_33577,asmbl_33581,asmbl_33582,asmbl_33583	none	STRG.27456.1,STRG.27456.2,STRG.27456.3,blat.proc3829885.chain_505,blat.proc3829885.chain_509	5	Trinity_GG_15145_c0_g1_i5,blat.proc3829885.chain_508	2
scaffold_4	alternate_exon	4415345	4417800	+	asmbl_42577,asmbl_42590,asmbl_42591,asmbl_42593	none	STRG.4344.1,blat.proc3829873.chain_682,blat.proc3829873.chain_685,blat.proc3829873.chain_691,blat.proc3829873.chain_697	5	blat.proc3829873.chain_693	1
scaffold_10	alt_donor	2765247	2765248	-	asmbl_3041,asmbl_3042	none	STRG.12086.1,blat.proc3829893.chain_541,blat.proc3829893.chain_543	3	STRG.12086.2,STRG.12086.3,blat.proc3829893.chain_542,blat.proc3829893.chain_544	4
scaffold_3	starts_in_intron	3262234	3262234	+	asmbl_39893	none	Trinity_GG_1771_c0_g1_i11,Trinity_GG_1771_c0_g1_i19,blat.proc3829871.chain_3296,blat.proc3829871.chain_3301	4	STRG.3087.1,STRG.3087.6,blat.proc3829871.chain_3297,blat.proc3829871.chain_3306,blat.proc3829871.chain_3309	5
scaffold_21	alternate_exon	830866	834853	+	asmbl_28334	none	blat.proc3829883.chain_910	1	STRG.23762.3	1
scaffold_10	alt_acceptor	6000723	6000724	+	asmbl_4493	none	STRG.12414.1,blat.proc3829877.chain_1044	2	STRG.12414.2,blat.proc3829877.chain_1045	2
scaffold_3	alt_acceptor	17530906	17530907	+	asmbl_40646	none	STRG.3982.1,blat.proc3829873.chain_337	2	STRG.3982.2	1
scaffold_11	retained_exon	17100753	17100818	+	asmbl_6175,asmbl_6176	none	STRG.14365.2,STRG.14365.3,blat.proc3829877.chain_2870,blat.proc3829877.chain_2871	4	STRG.14365.1	1
scaffold_18	alt_donor	5984775	5984776	+	asmbl_20671,asmbl_20675	none	blat.proc3829881.chain_2206,blat.proc3829881.chain_2207,blat.proc3829881.chain_2208,blat.proc3829881.chain_2209	4	blat.proc3829881.chain_2204	1
scaffold_18	retained_intron	12603092	12603275	-	asmbl_20184	none	STRG.21710.1,blat.proc3829897.chain_2531	2	STRG.21710.2,blat.proc3829897.chain_2530	2
scaffold_2	retained_intron	20441919	20442053	+	asmbl_25365	none	blat.proc3829871.chain_3010	1	STRG.2884.1,blat.proc3829871.chain_3011	2
scaffold_21	retained_intron	7367552	7367674	-	asmbl_27826	none	blat.proc3829899.chain_1315	1	STRG.24244.1,STRG.24244.2,blat.proc3829899.chain_1314,blat.proc3829899.chain_1316,blat.proc3829899.chain_1317	5
scaffold_14	alt_donor	5451413	5451414	+	asmbl_11990	none	STRG.17005.1,Trinity_GG_9352_c0_g1_i6,blat.proc3829879.chain_1723	3	Trinity_GG_9352_c0_g1_i3,blat.proc3829879.chain_1727	2
scaffold_1	ends_in_intron	12333757	12333757	-	asmbl_711,asmbl_715,asmbl_716,asmbl_717,asmbl_718,asmbl_719,asmbl_720,asmbl_721,asmbl_722	none	blat.proc3829887.chain_734,blat.proc3829887.chain_735,blat.proc3829887.chain_736,blat.proc3829887.chain_737,blat.proc3829887.chain_739,blat.proc3829887.chain_743,blat.proc3829887.chain_744,blat.proc3829887.chain_745,blat.proc3829887.chain_746	9	STRG.843.1	1
scaffold_1	spliced_intron	13433544	13433580	-	asmbl_809	none	STRG.957.1	1	STRG.957.2,blat.proc3829887.chain_841	2
scaffold_26	retained_exon	5745760	5745849	+	asmbl_35559,asmbl_35561	none	STRG.28253.2,STRG.28253.3,blat.proc3829885.chain_1265	3	STRG.28253.1,Trinity_GG_15616_c0_g1_i2,blat.proc3829885.chain_1266,blat.proc3829885.chain_1267	4
scaffold_6	spliced_intron	3065689	3066024	+	asmbl_46755,asmbl_46756	none	STRG.7310.1,STRG.7310.2,blat.proc3829873.chain_3430,blat.proc3829873.chain_3431	4	blat.proc3829873.chain_3432	1
scaffold_21	spliced_intron	730900	730999	+	asmbl_28312,asmbl_28313	none	STRG.23754.2,STRG.23754.5,Trinity_GG_13126_c0_g1_i1,blat.proc3829883.chain_853	4	STRG.23754.3	1
scaffold_12	alternate_exon	7618666	7618701	-	asmbl_7731	none	blat.proc3829893.chain_3215	1	STRG.14826.1,STRG.14826.2,STRG.14826.3,STRG.14826.4,blat.proc3829893.chain_3214	5
scaffold_15	spliced_intron	12742614	12743313	+	asmbl_14541,asmbl_14544	none	STRG.18731.2,STRG.18731.3,blat.proc3829879.chain_3353	3	STRG.18731.5,blat.proc3829879.chain_3351	2
scaffold_16	spliced_intron	6149425	6149506	+	asmbl_17069,asmbl_17075	none	STRG.19342.1,blat.proc3829881.chain_214	2	Trinity_GG_10589_c0_g1_i7,blat.proc3829881.chain_208,blat.proc3829881.chain_213	3
scaffold_20	spliced_intron	5922620	5922744	-	asmbl_26708,asmbl_26709,asmbl_26710	none	STRG.23184.1,STRG.23184.2,STRG.23184.3,blat.proc3829899.chain_125,blat.proc3829899.chain_127	5	STRG.23184.4,Trinity_GG_29901_c0_g1_i3,blat.proc3829899.chain_126	3
scaffold_27	retained_intron	358421	358649	-	asmbl_36631	none	Trinity_GG_32944_c0_g1_i1,blat.proc3829901.chain_1663	2	STRG.28548.1,STRG.28548.2,Trinity_GG_32944_c0_g1_i2,blat.proc3829901.chain_1664	4
scaffold_26	starts_in_intron	3669680	3669680	+	asmbl_35344	none	blat.proc3829885.chain_1033	1	STRG.28032.1,blat.proc3829885.chain_1028,blat.proc3829885.chain_1029,blat.proc3829885.chain_1030,blat.proc3829885.chain_1032	5
scaffold_8	skipped_exon	12920184	12920588	-	asmbl_53262	none	STRG.10471.4	1	STRG.10471.2,STRG.10471.3,STRG.10471.5,STRG.10471.6,STRG.10471.7,blat.proc3829891.chain_2571,blat.proc3829891.chain_2572,blat.proc3829891.chain_2573	8
scaffold_3	retained_intron	13700565	13700819	+	asmbl_40411	none	blat.proc3829873.chain_131	1	STRG.3712.2,blat.proc3829873.chain_130	2
scaffold_9	ends_in_intron	8944530	8944530	-	asmbl_55119	none	Trinity_GG_23212_c0_g1_i2,blat.proc3829891.chain_3325	2	blat.proc3829891.chain_3324	1
scaffold_3	alternate_exon	2969245	2969308	-	asmbl_38704	none	STRG.3049.1,blat.proc3829887.chain_2833	2	STRG.3049.2	1
scaffold_20	starts_in_intron	7818395	7818395	-	asmbl_26848	none	Trinity_GG_30032_c0_g1_i1,blat.proc3829899.chain_366	2	STRG.23318.1,Trinity_GG_30032_c0_g1_i2,blat.proc3829899.chain_367	3
scaffold_10	starts_in_intron	7283927	7283927	-	asmbl_3456	none	STRG.12535.2,blat.proc3829893.chain_959	2	STRG.12535.1,blat.proc3829893.chain_957,blat.proc3829893.chain_958	3
scaffold_5	retained_intron	15521839	15522081	-	asmbl_46068	none	STRG.6739.1,blat.proc3829889.chain_2759	2	STRG.6739.2,blat.proc3829889.chain_2757	2
scaffold_10	spliced_intron	12895006	12895119	-	asmbl_3742,asmbl_3743	none	STRG.12877.1,blat.proc3829893.chain_1336,blat.proc3829893.chain_1339	3	blat.proc3829893.chain_1337	1
scaffold_1	starts_in_intron	11453246	11453246	-	asmbl_633	none	blat.proc3829887.chain_650	1	STRG.757.1,blat.proc3829887.chain_651	2
scaffold_16	retained_intron	116383	116577	+	asmbl_16784	none	Trinity_GG_10418_c1_g1_i1,blat.proc3829879.chain_3616	2	STRG.18990.1,Trinity_GG_10418_c0_g1_i2,blat.proc3829879.chain_3614,blat.proc3829879.chain_3615	4
scaffold_4	retained_intron	5651423	5651635	-	asmbl_41355,asmbl_41361,asmbl_41368	none	STRG.4469.1,blat.proc3829889.chain_606,blat.proc3829889.chain_609	3	STRG.4469.2,STRG.4469.4,Trinity_GG_19533_c0_g1_i2,blat.proc3829889.chain_602,blat.proc3829889.chain_603,blat.proc3829889.chain_605,blat.proc3829889.chain_608,blat.proc3829889.chain_610,blat.proc3829889.chain_611,blat.proc3829889.chain_612,blat.proc3829889.chain_613	11
scaffold_3	retained_intron	6049629	6049714	-	asmbl_38837	none	STRG.3255.7	1	STRG.3255.1,STRG.3255.2,STRG.3255.5,Trinity_GG_18777_c0_g1_i1,blat.proc3829887.chain_2985,blat.proc3829887.chain_2986	6
scaffold_1	alt_acceptor	10409423	10409424	-	asmbl_587,asmbl_590	none	STRG.674.1,blat.proc3829887.chain_600,blat.proc3829887.chain_601	3	STRG.674.2,blat.proc3829887.chain_598	2
scaffold_17	starts_in_intron	814277	814277	-	asmbl_18692	none	STRG.19914.1	1	blat.proc3829897.chain_867	1
scaffold_17	alt_acceptor	13196844	13196845	-	asmbl_19409,asmbl_19411	none	STRG.20803.3,blat.proc3829897.chain_1734	2	STRG.20803.1,STRG.20803.2,STRG.20803.4,blat.proc3829897.chain_1732,blat.proc3829897.chain_1733,blat.proc3829897.chain_1737	6
scaffold_25	retained_exon	2690332	2690449	+	asmbl_33400	none	STRG.27213.1	1	STRG.27213.2,blat.proc3829885.chain_261	2
scaffold_14	spliced_intron	12707267	12707317	-	asmbl_13575	none	STRG.17568.2	1	STRG.17568.1	1
scaffold_25	ends_in_intron	5695336	5695336	-	asmbl_34257	none	blat.proc3829901.chain_779	1	STRG.27451.1,blat.proc3829901.chain_776,blat.proc3829901.chain_777	3
scaffold_16	alternate_exon	8027309	8027875	-	asmbl_16396	none	blat.proc3829897.chain_473	1	Trinity_GG_27922_c0_g2_i1,blat.proc3829897.chain_474	2
scaffold_11	alt_donor	8903670	8903671	-	asmbl_6870	none	STRG.13899.1,Trinity_GG_24769_c0_g1_i1,blat.proc3829893.chain_2313	3	Trinity_GG_24769_c0_g1_i2,blat.proc3829893.chain_2314	2
scaffold_9	alt_acceptor	12314457	12314458	-	asmbl_55333	none	STRG.11550.1,blat.proc3829891.chain_3642	2	STRG.11550.2,blat.proc3829891.chain_3641	2
scaffold_4	retained_intron	19539841	19539875	-	asmbl_42200	none	STRG.5538.2,Trinity_GG_20121_c0_g1_i2,blat.proc3829889.chain_1602	3	blat.proc3829889.chain_1601	1
scaffold_11	alt_donor	9018553	9018554	-	asmbl_6885,asmbl_6886,asmbl_6888,asmbl_6889	none	STRG.13926.1,STRG.13926.2,blat.proc3829893.chain_2276,blat.proc3829893.chain_2278,blat.proc3829893.chain_2279	5	blat.proc3829893.chain_2277	1
scaffold_14	starts_in_intron	178396	178396	-	asmbl_12770	none	blat.proc3829895.chain_1363	1	STRG.16696.1,STRG.16696.3,blat.proc3829895.chain_1362	3
scaffold_27	skipped_exon	3972325	3972647	+	asmbl_36204	none	STRG.28842.2	1	STRG.28842.1,Trinity_GG_15960_c0_g1_i1,blat.proc3829885.chain_1917,blat.proc3829885.chain_1919	4
scaffold_6	alternate_exon	5434121	5434251	+	asmbl_46886,asmbl_46889	none	STRG.7507.3,Trinity_GG_4108_c0_g1_i2,Trinity_GG_4108_c0_g1_i5,blat.proc3829873.chain_3621,blat.proc3829873.chain_3624	5	STRG.7507.1,STRG.7507.2,blat.proc3829873.chain_3620,blat.proc3829873.chain_3622	4
scaffold_1	skipped_exon	16718940	16719480	-	asmbl_1010	none	STRG.1175.3	1	STRG.1175.2,STRG.1175.4,STRG.1175.5,STRG.1175.6,blat.proc3829887.chain_1050,blat.proc3829887.chain_1051	6
scaffold_24	alt_acceptor	8643354	8643355	+	asmbl_32435	none	STRG.26855.1,blat.proc3829883.chain_3731	2	STRG.26855.2	1
scaffold_14	starts_in_intron	11566671	11566671	+	asmbl_12373	none	Trinity_GG_9576_c0_g1_i1,blat.proc3829879.chain_2121	2	STRG.17477.1,blat.proc3829879.chain_2120	2
scaffold_14	alt_acceptor	3156055	3156056	+	asmbl_11889,asmbl_11890	none	blat.proc3829879.chain_1633,blat.proc3829879.chain_1640	2	STRG.16893.1,STRG.16893.2,STRG.16893.3,blat.proc3829879.chain_1625,blat.proc3829879.chain_1626,blat.proc3829879.chain_1628,blat.proc3829879.chain_1629,blat.proc3829879.chain_1630,blat.proc3829879.chain_1631,blat.proc3829879.chain_1632,blat.proc3829879.chain_1634,blat.proc3829879.chain_1635,blat.proc3829879.chain_1636,blat.proc3829879.chain_1637,blat.proc3829879.chain_1638,blat.proc3829879.chain_1639	16
scaffold_10	ends_in_intron	11489245	11489245	+	asmbl_4737	none	blat.proc3829877.chain_1374	1	STRG.12796.1	1
scaffold_2	retained_intron	11448324	11448569	-	asmbl_23463	none	Trinity_GG_18286_c0_g1_i1,blat.proc3829887.chain_2161	2	STRG.2256.1,blat.proc3829887.chain_2162	2
scaffold_12	spliced_intron	16399852	16401681	+	asmbl_9135	none	STRG.15385.3	1	STRG.15385.1,STRG.15385.4,STRG.15385.6,Trinity_GG_8419_c0_g1_i1,Trinity_GG_8419_c0_g1_i2,Trinity_GG_8419_c0_g1_i6,blat.proc3829877.chain_3734,blat.proc3829877.chain_3735,blat.proc3829877.chain_3736	9
scaffold_22	alternate_exon	11420777	11420865	+	asmbl_29670	none	STRG.25467.1,Trinity_GG_14055_c0_g1_i2,blat.proc3829883.chain_2388	3	STRG.25467.2,Trinity_GG_14055_c0_g1_i1,blat.proc3829883.chain_2387	3
scaffold_3	spliced_intron	14183210	14183724	-	asmbl_39277,asmbl_39280,asmbl_39281	none	STRG.3759.2,STRG.3759.3,STRG.3759.5,Trinity_GG_19089_c0_g1_i5,blat.proc3829887.chain_3542	5	STRG.3759.1,STRG.3759.4,Trinity_GG_19089_c0_g1_i3,Trinity_GG_19089_c0_g1_i6,blat.proc3829887.chain_3544	5
scaffold_11	retained_intron	38298	38788	+	asmbl_5210	none	STRG.13224.3,Trinity_GG_7279_c0_g1_i2,blat.proc3829877.chain_1746	3	blat.proc3829877.chain_1745	1
scaffold_9	starts_in_intron	6423084	6423084	-	asmbl_55018	none	STRG.11165.1	1	STRG.11165.2	1
scaffold_21	starts_in_intron	11274609	11274609	-	asmbl_28140	none	blat.proc3829899.chain_1688	1	STRG.24588.1,STRG.24588.2,blat.proc3829899.chain_1689,blat.proc3829899.chain_1691,blat.proc3829899.chain_1695	5
scaffold_4	spliced_intron	4691873	4692128	+	asmbl_42627,asmbl_42630,asmbl_42633	none	STRG.4376.1,blat.proc3829873.chain_714,blat.proc3829873.chain_716,blat.proc3829873.chain_717	4	blat.proc3829873.chain_718	1
scaffold_10	alt_donor	3927934	3927935	-	asmbl_3158	none	blat.proc3829893.chain_690	1	STRG.12230.1,STRG.12230.3,STRG.12230.4,blat.proc3829893.chain_691,blat.proc3829893.chain_693,blat.proc3829893.chain_694,blat.proc3829893.chain_695	7
scaffold_25	starts_in_intron	803059	803059	-	asmbl_33991,asmbl_33992,asmbl_33994	none	STRG.27118.1,STRG.27118.4,STRG.27118.5	3	STRG.27118.3	1
scaffold_24	spliced_intron	10778708	10778819	-	asmbl_33210,asmbl_33211,asmbl_33212,asmbl_33214	none	STRG.27021.1,blat.proc3829901.chain_292,blat.proc3829901.chain_293,blat.proc3829901.chain_294,blat.proc3829901.chain_296	5	blat.proc3829901.chain_295	1
scaffold_24	spliced_intron	10480275	10480714	+	asmbl_32564,asmbl_32567,asmbl_32569	none	STRG.26999.1,STRG.26999.3,blat.proc3829885.chain_114,blat.proc3829885.chain_115	4	blat.proc3829885.chain_116	1
scaffold_19	retained_intron	11168790	11168939	+	asmbl_22475,asmbl_22477	none	blat.proc3829881.chain_3332,blat.proc3829881.chain_3335	2	blat.proc3829881.chain_3334	1
scaffold_19	alt_acceptor	8339611	8339612	+	asmbl_22318	none	STRG.22278.1,blat.proc3829881.chain_3135,blat.proc3829897.chain_3006	3	STRG.22278.2	1
scaffold_500	spliced_intron	1334	1449	+	asmbl_46447,asmbl_46452	none	blat.proc3829885.chain_3365,blat.proc3829885.chain_3367	2	blat.proc3829885.chain_3364,blat.proc3829885.chain_3368	2
scaffold_15	retained_intron	6190234	6190253	+	asmbl_14187	none	STRG.18269.1,blat.proc3829879.chain_2895,blat.proc3829879.chain_2896	3	STRG.18269.2	1
scaffold_20	spliced_intron	5923668	5924088	-	asmbl_26708,asmbl_26711	none	STRG.23184.3,blat.proc3829899.chain_144,blat.proc3829899.chain_149	3	STRG.23184.4,Trinity_GG_29913_c0_g1_i4,blat.proc3829899.chain_146	3
scaffold_18	spliced_intron	9259474	9259564	-	asmbl_20093,asmbl_20095	none	STRG.21559.1,STRG.21559.3,Trinity_GG_29070_c0_g1_i5,blat.proc3829897.chain_2410	4	STRG.21559.2,Trinity_GG_29070_c0_g1_i2,Trinity_GG_29070_c0_g1_i3,blat.proc3829897.chain_2411,blat.proc3829897.chain_2413	5
scaffold_7	ends_in_intron	15271137	15271137	+	asmbl_51318	none	STRG.9532.5	1	STRG.9532.1,STRG.9532.2,STRG.9532.4,blat.proc3829875.chain_1982,blat.proc3829875.chain_1984,blat.proc3829875.chain_1985,blat.proc3829875.chain_1987	7
scaffold_11	spliced_intron	2061692	2061854	+	asmbl_5310,asmbl_5313,asmbl_5314	none	STRG.13352.1,STRG.13352.2,STRG.13352.3,blat.proc3829877.chain_1843	4	blat.proc3829877.chain_1846	1
scaffold_2	retained_exon	2987706	2987819	+	asmbl_24289	none	STRG.1732.1,Trinity_GG_993_c1_g1_i1,blat.proc3829871.chain_1819	3	STRG.1732.2,Trinity_GG_993_c1_g1_i2,blat.proc3829871.chain_1818	3
scaffold_10	alternate_exon	16252344	16257717	+	asmbl_4983	none	STRG.13097.1	1	STRG.13097.4	1
scaffold_3	alt_donor	3323603	3323604	-	asmbl_38727,asmbl_38728	none	STRG.3076.1,STRG.3076.2,blat.proc3829887.chain_2788,blat.proc3829887.chain_2790	4	blat.proc3829887.chain_2789	1
scaffold_15	alternate_exon	14748678	14748823	-	asmbl_15761,asmbl_15762	none	STRG.18886.1,STRG.18886.2,blat.proc3829895.chain_3654,blat.proc3829895.chain_3655	4	STRG.18886.3	1
scaffold_23	alt_donor	362463	362464	-	asmbl_31315,asmbl_31320	none	STRG.25543.3,blat.proc3829899.chain_2656	2	blat.proc3829899.chain_2649	1
scaffold_26	alt_donor	3082195	3082196	+	asmbl_35295	none	STRG.27981.1,blat.proc3829885.chain_949	2	STRG.27981.2	1
scaffold_13	ends_in_intron	9921292	9921292	-	asmbl_10007	none	STRG.16217.1	1	blat.proc3829895.chain_998	1
scaffold_4	ends_in_intron	6350719	6350719	+	asmbl_42736	none	Trinity_GG_2488_c0_g1_i2,blat.proc3829873.chain_845	2	STRG.4504.1,Trinity_GG_2488_c0_g1_i3,blat.proc3829873.chain_846	3
scaffold_27	retained_exon	2830195	2830215	+	asmbl_36086	none	STRG.28748.1,blat.proc3829885.chain_1828	2	STRG.28748.2,STRG.28748.3,blat.proc3829885.chain_1824,blat.proc3829885.chain_1826	4
scaffold_7	spliced_intron	12271120	12271204	+	asmbl_51114,asmbl_51115	none	STRG.9313.7,Trinity_GG_5141_c0_g1_i8,blat.proc3829875.chain_1713	3	STRG.9313.4,STRG.9313.6,Trinity_GG_5141_c0_g1_i5,Trinity_GG_5141_c0_g1_i6,blat.proc3829875.chain_1712,blat.proc3829875.chain_1715	6
scaffold_14	alternate_exon	8216518	8217384	-	asmbl_13237,asmbl_13239,asmbl_13241	none	STRG.17218.2,Trinity_GG_26673_c0_g1_i5,blat.proc3829895.chain_1928,blat.proc3829895.chain_1929,blat.proc3829895.chain_1932	5	STRG.17218.1	1
scaffold_23	starts_in_intron	6632391	6632391	+	asmbl_30935	none	blat.proc3829883.chain_2811	1	STRG.25985.1,STRG.25985.2,blat.proc3829883.chain_2814,blat.proc3829883.chain_2815,blat.proc3829883.chain_2816,blat.proc3829883.chain_2817	6
scaffold_8	alt_acceptor	3219230	3219231	+	asmbl_51736,asmbl_51738	none	STRG.9823.3,Trinity_GG_5470_c1_g1_i2,blat.proc3829875.chain_2323	3	STRG.9823.5,blat.proc3829875.chain_2322	2
scaffold_14	retained_intron	8213726	8214121	-	asmbl_13239	none	Trinity_GG_26673_c0_g1_i5,blat.proc3829895.chain_1932	2	STRG.17218.1,STRG.17218.2,STRG.17218.3,blat.proc3829895.chain_1928,blat.proc3829895.chain_1929,blat.proc3829895.chain_1930,blat.proc3829895.chain_1931	7
scaffold_7	retained_exon	8813564	8814350	+	asmbl_50943	none	STRG.9113.1,blat.proc3829875.chain_1478	2	STRG.9113.2,blat.proc3829875.chain_1477	2
scaffold_10	ends_in_intron	9072371	9072371	+	asmbl_4638,asmbl_4639	none	STRG.12648.3,blat.proc3829877.chain_1225,blat.proc3829877.chain_1226	3	STRG.12648.1,STRG.12648.2	2
scaffold_2	alt_acceptor	3899360	3899361	+	asmbl_24337,asmbl_24338,asmbl_24340,asmbl_24342	none	STRG.1831.1,STRG.1831.2,STRG.1831.3,blat.proc3829871.chain_1839,blat.proc3829871.chain_1840,blat.proc3829871.chain_1842,blat.proc3829871.chain_1843	7	blat.proc3829871.chain_1841	1
scaffold_8	retained_intron	16505056	16505853	-	asmbl_53411,asmbl_53413	none	Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i22,blat.proc3829891.chain_2863,blat.proc3829891.chain_2870	4	STRG.10621.1,STRG.10621.3,STRG.10621.4,Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2859,blat.proc3829891.chain_2862,blat.proc3829891.chain_2865,blat.proc3829891.chain_2867,blat.proc3829891.chain_2868,blat.proc3829891.chain_2871	12
scaffold_10	alternate_exon	5561718	5561911	-	asmbl_3291	none	STRG.12378.1,blat.proc3829893.chain_781	2	STRG.12378.2,blat.proc3829893.chain_780	2
scaffold_9	alt_acceptor	9706999	9707000	+	asmbl_54221	none	blat.proc3829877.chain_114	1	STRG.11336.2,Trinity_GG_6324_c1_g1_i1,blat.proc3829877.chain_109,blat.proc3829877.chain_111	4
scaffold_12	alt_donor	16175491	16175492	+	asmbl_9110	none	STRG.15359.3,Trinity_GG_8421_c0_g1_i2,blat.proc3829877.chain_3744	3	STRG.15359.1,STRG.15359.2,Trinity_GG_8421_c0_g1_i4,blat.proc3829877.chain_3742	4
scaffold_26	spliced_intron	5874800	5875093	-	asmbl_34908	none	STRG.28273.2,Trinity_GG_32822_c0_g1_i1,blat.proc3829901.chain_1451	3	STRG.28273.1,Trinity_GG_32822_c1_g1_i1,blat.proc3829901.chain_1452	3
scaffold_15	spliced_intron	14324441	14324883	-	asmbl_15728	none	blat.proc3829895.chain_3603	1	Trinity_GG_27599_c0_g1_i1,Trinity_GG_27599_c0_g1_i11,Trinity_GG_27599_c0_g1_i7,blat.proc3829895.chain_3600,blat.proc3829895.chain_3605	5
scaffold_5	alt_donor	4855684	4855685	-	asmbl_45402,asmbl_45404,asmbl_45406	none	STRG.5937.1,STRG.5937.2,blat.proc3829889.chain_2016,blat.proc3829889.chain_2019	4	blat.proc3829889.chain_2017	1
scaffold_15	ends_in_intron	14331159	14331159	-	asmbl_15730	none	Trinity_GG_27599_c1_g1_i1,blat.proc3829895.chain_3608	2	blat.proc3829895.chain_3603	1
scaffold_8	retained_intron	16099356	16100916	-	asmbl_53366	none	STRG.10586.1,blat.proc3829891.chain_2665	2	STRG.10586.2	1
scaffold_16	spliced_intron	4095863	4096600	+	asmbl_16967	none	STRG.19214.3	1	STRG.19214.1,STRG.19214.2,Trinity_GG_10532_c0_g1_i2,blat.proc3829881.chain_77,blat.proc3829881.chain_82	5
scaffold_15	retained_intron	15412571	15412679	+	asmbl_14727,asmbl_14728,asmbl_14730,asmbl_14731,asmbl_14732,asmbl_14733,asmbl_14734,asmbl_14735,asmbl_14736	none	STRG.18922.1,STRG.18922.2,STRG.18922.3,STRG.18922.5,blat.proc3829879.chain_3550,blat.proc3829879.chain_3551,blat.proc3829879.chain_3553,blat.proc3829879.chain_3555,blat.proc3829879.chain_3556,blat.proc3829879.chain_3557	10	STRG.18922.4,STRG.18922.6,blat.proc3829879.chain_3552	3
scaffold_14	alt_donor	6277129	6277130	-	asmbl_13094,asmbl_13095,asmbl_13096,asmbl_13097	none	STRG.17065.1,STRG.17065.2,STRG.17065.3,STRG.17065.4,blat.proc3829895.chain_1814,blat.proc3829895.chain_1816,blat.proc3829895.chain_1817	7	blat.proc3829895.chain_1815	1
scaffold_18	retained_intron	8726455	8726561	+	asmbl_20881,asmbl_20882,asmbl_20887	none	STRG.21533.5,STRG.21533.6,Trinity_GG_11882_c0_g1_i2,blat.proc3829881.chain_2482,blat.proc3829881.chain_2486,blat.proc3829881.chain_2487	6	STRG.21533.1,STRG.21533.2,STRG.21533.3,blat.proc3829881.chain_2483,blat.proc3829881.chain_2484,blat.proc3829881.chain_2485,blat.proc3829881.chain_2488	7
scaffold_4	starts_in_intron	12748449	12748449	+	asmbl_43079	none	Trinity_GG_2748_c0_g1_i2,blat.proc3829873.chain_1264	2	STRG.4918.1,blat.proc3829873.chain_1265	2
scaffold_26	alt_acceptor	2960712	2960713	-	asmbl_34733,asmbl_34734,asmbl_34736,asmbl_34738	none	STRG.27973.1,STRG.27973.2,STRG.27973.4,blat.proc3829901.chain_1232,blat.proc3829901.chain_1233,blat.proc3829901.chain_1235	6	STRG.27973.3,blat.proc3829901.chain_1234	2
scaffold_23	starts_in_intron	1484469	1484469	-	asmbl_31370	none	Trinity_GG_31328_c0_g1_i1	1	STRG.25608.1,blat.proc3829899.chain_2710	2
scaffold_2	retained_intron	7988750	7988928	+	asmbl_24641	none	STRG.2093.1,Trinity_GG_1145_c1_g1_i1,blat.proc3829871.chain_2090	3	STRG.2093.2,Trinity_GG_1145_c1_g1_i2,blat.proc3829871.chain_2091	3
scaffold_13	retained_exon	518334	518380	+	asmbl_10458,asmbl_10460	none	STRG.15434.4,STRG.15434.5	2	STRG.15434.2,STRG.15434.3,Trinity_GG_8491_c0_g1_i1,Trinity_GG_8491_c0_g1_i2,blat.proc3829879.chain_110,blat.proc3829879.chain_113,blat.proc3829879.chain_115,blat.proc3829879.chain_116	8
scaffold_9	retained_intron	16568264	16568413	+	asmbl_54573,asmbl_54575	none	Trinity_GG_6586_c0_g1_i10,Trinity_GG_6586_c0_g1_i23,blat.proc3829877.chain_552,blat.proc3829877.chain_555	4	STRG.11798.2	1
scaffold_14	ends_in_intron	12122654	12122654	-	asmbl_13535	none	STRG.17528.2	1	STRG.17528.1	1
scaffold_15	spliced_intron	8039747	8040076	-	asmbl_15348	none	STRG.18369.4	1	STRG.18369.2,Trinity_GG_27305_c0_g1_i5,Trinity_GG_27305_c0_g1_i6,blat.proc3829895.chain_3068,blat.proc3829895.chain_3071	5
scaffold_7	starts_in_intron	4072238	4072238	-	asmbl_49666	none	blat.proc3829891.chain_1110	1	STRG.8797.2,blat.proc3829891.chain_1109	2
scaffold_4	alt_acceptor	13416713	13416714	+	asmbl_43121,asmbl_43123,asmbl_43124,asmbl_43125	none	STRG.4972.1,blat.proc3829873.chain_1257,blat.proc3829873.chain_1258,blat.proc3829873.chain_1259,blat.proc3829873.chain_1260	5	STRG.4972.2	1
scaffold_20	alt_donor	2844419	2844420	-	asmbl_26600,asmbl_26601	none	STRG.23005.1,STRG.23005.4,blat.proc3829899.chain_22,blat.proc3829899.chain_24	4	blat.proc3829899.chain_23	1
scaffold_1	spliced_intron	43037	43442	-	asmbl_2,asmbl_3,asmbl_6,asmbl_7	none	STRG.19.1,STRG.19.3,blat.proc3829885.chain_3729,blat.proc3829885.chain_3731,blat.proc3829885.chain_3732	5	STRG.19.2,Trinity_GG_17053_c0_g1_i7,blat.proc3829885.chain_3734	3
scaffold_13	alt_donor	8268604	8268605	+	asmbl_11097	none	STRG.16102.1,blat.proc3829879.chain_855	2	STRG.16102.2	1
scaffold_10	alt_acceptor	13046467	13046468	-	asmbl_3757,asmbl_3759	none	STRG.12902.2,blat.proc3829893.chain_1403	2	STRG.12902.1,blat.proc3829893.chain_1402	2
scaffold_5	alt_acceptor	4683007	4683008	-	asmbl_45370,asmbl_45373,asmbl_45377,asmbl_45379,asmbl_45380,asmbl_45381,asmbl_45382	none	STRG.5919.1,blat.proc3829889.chain_2027,blat.proc3829889.chain_2028,blat.proc3829889.chain_2029,blat.proc3829889.chain_2030,blat.proc3829889.chain_2032,blat.proc3829889.chain_2033,blat.proc3829889.chain_2035	8	STRG.5919.4	1
scaffold_9	alt_donor	6281816	6281817	+	asmbl_54071	none	STRG.11155.1,Trinity_GG_6191_c0_g1_i2,blat.proc3829875.chain_3601	3	STRG.11155.2,Trinity_GG_6191_c0_g1_i1,blat.proc3829875.chain_3600	3
scaffold_21	alt_donor	2486908	2486909	+	asmbl_28414	none	STRG.23860.2	1	STRG.23860.1,blat.proc3829883.chain_1004	2
scaffold_15	spliced_intron	670210	670293	-	asmbl_14954	none	blat.proc3829895.chain_2554	1	STRG.17917.2,blat.proc3829895.chain_2553	2
scaffold_13	alternate_exon	8799103	8805239	-	asmbl_9942	none	STRG.16137.4	1	blat.proc3829895.chain_942	1
scaffold_19	retained_intron	7669634	7671322	-	asmbl_21459	none	STRG.22235.2,blat.proc3829897.chain_2974	2	STRG.22235.1	1
scaffold_500	retained_intron	2902	3472	+	asmbl_46443,asmbl_46444,asmbl_46445,asmbl_46446,asmbl_46447	none	STRG.30347.2,STRG.30347.4,Trinity_GG_16793_c0_g1_i10,Trinity_GG_16793_c0_g1_i19,Trinity_GG_33932_c0_g1_i2,blat.proc3829885.chain_3356,blat.proc3829885.chain_3358,blat.proc3829885.chain_3363,blat.proc3829901.chain_3251	9	STRG.30347.1,STRG.30347.3,Trinity_GG_33932_c0_g1_i3,blat.proc3829885.chain_3357,blat.proc3829885.chain_3361,blat.proc3829885.chain_3362,blat.proc3829901.chain_3250	7
scaffold_3	alt_donor	17116856	17116857	+	asmbl_40604	none	STRG.3957.7,Trinity_GG_2203_c0_g1_i10,blat.proc3829873.chain_322	3	STRG.3957.2,STRG.3957.3,STRG.3957.4,STRG.3957.6,blat.proc3829873.chain_317	5
scaffold_6	retained_intron	7937253	7937838	-	asmbl_48445,asmbl_48446,asmbl_48447,asmbl_48449,asmbl_48450	none	STRG.7666.1,blat.proc3829889.chain_3701,blat.proc3829889.chain_3702,blat.proc3829889.chain_3703,blat.proc3829889.chain_3705,blat.proc3829889.chain_3706	6	STRG.7666.4	1
scaffold_5	skipped_exon	15016107	15017415	+	asmbl_44639	none	STRG.6683.2,Trinity_GG_3608_c0_g1_i2	2	STRG.6683.1,Trinity_GG_3608_c0_g1_i1	2
scaffold_1	alt_acceptor	11174135	11174136	+	asmbl_2065	none	STRG.743.3,blat.proc3829871.chain_815	2	STRG.743.2,blat.proc3829871.chain_814	2
scaffold_19	alternate_exon	691757	691811	-	asmbl_21202	none	STRG.21837.3,blat.proc3829897.chain_2608	2	STRG.21837.2,Trinity_GG_29194_c1_g1_i1,blat.proc3829897.chain_2609	3
scaffold_12	alternate_exon	4635626	4635683	-	asmbl_7561	none	STRG.14634.1	1	STRG.14634.2,STRG.14634.3	2
scaffold_3	retained_intron	7593502	7593776	+	asmbl_40130	none	blat.proc3829871.chain_3549	1	Trinity_GG_1911_c0_g1_i2,blat.proc3829871.chain_3545	2
scaffold_28	retained_exon	6546833	6547549	-	asmbl_37678,asmbl_37681	none	STRG.29730.1,STRG.29730.2	2	STRG.29730.3	1
scaffold_5	alternate_exon	5737158	5738209	+	asmbl_44029	none	blat.proc3829873.chain_2048	1	STRG.5984.5,blat.proc3829873.chain_2046	2
scaffold_8	spliced_intron	17815077	17815250	+	asmbl_52503,asmbl_52506	none	STRG.10687.4,blat.proc3829875.chain_3125	2	blat.proc3829875.chain_3119,blat.proc3829875.chain_3124	2
scaffold_22	spliced_intron	323190	323437	+	asmbl_29133,asmbl_29137	none	STRG.24670.3,blat.proc3829883.chain_1729	2	STRG.24670.2	1
scaffold_4	skipped_exon	1877027	1879616	+	asmbl_42460	none	STRG.4206.2,blat.proc3829873.chain_548	2	STRG.4206.1,blat.proc3829873.chain_547	2
scaffold_28	alt_acceptor	3391831	3391832	+	asmbl_38173	none	STRG.29537.3	1	STRG.29537.1,STRG.29537.2	2
scaffold_4	alt_acceptor	4173432	4173433	-	asmbl_41241	none	STRG.4332.1,blat.proc3829889.chain_462	2	STRG.4332.2	1
scaffold_8	ends_in_intron	5713461	5713461	+	asmbl_51885	none	blat.proc3829875.chain_2477	1	STRG.9983.1	1
scaffold_6	ends_in_intron	744767	744767	-	asmbl_48000	none	Trinity_GG_20994_c0_g1_i2,blat.proc3829889.chain_3112	2	STRG.7130.1	1
scaffold_2	ends_in_intron	8777258	8777258	-	asmbl_23352	none	STRG.2134.2,Trinity_GG_18168_c2_g1_i1,blat.proc3829887.chain_1972	3	STRG.2134.1,Trinity_GG_18168_c0_g1_i3,blat.proc3829887.chain_1970	3
scaffold_14	spliced_intron	7298482	7298744	+	asmbl_12130	none	blat.proc3829879.chain_1856	1	STRG.17153.3,blat.proc3829879.chain_1852	2
scaffold_5	alt_acceptor	12811849	12811850	-	asmbl_45865	none	STRG.6499.1	1	STRG.6499.2	1
scaffold_14	ends_in_intron	8002830	8002830	+	asmbl_12163,asmbl_12165	none	STRG.17199.1,Trinity_GG_9467_c0_g1_i2,blat.proc3829879.chain_1934	3	STRG.17199.2,Trinity_GG_9467_c0_g1_i3,blat.proc3829879.chain_1933	3
scaffold_8	alt_donor	4693089	4693090	+	asmbl_51836	none	STRG.9918.2,blat.proc3829875.chain_2353	2	STRG.9918.1,blat.proc3829875.chain_2355	2
scaffold_4	starts_in_intron	8426517	8426517	-	asmbl_41512	none	STRG.4672.1,blat.proc3829889.chain_777	2	STRG.4672.2,blat.proc3829889.chain_775,blat.proc3829889.chain_776	3
scaffold_6	alternate_exon	2863981	2864077	+	asmbl_46723	none	STRG.7272.3	1	STRG.7272.1,STRG.7272.2	2
scaffold_1	skipped_exon	3146137	3146608	-	asmbl_136	none	STRG.193.2,blat.proc3829887.chain_78	2	STRG.193.1,blat.proc3829887.chain_79	2
scaffold_7	alt_donor	4915680	4915681	+	asmbl_50646	none	STRG.8828.3	1	STRG.8828.4	1
scaffold_2	retained_intron	7783180	7784364	+	asmbl_24605,asmbl_24606	none	STRG.2076.1,STRG.2076.5,Trinity_GG_1189_c0_g1_i13,Trinity_GG_1189_c0_g1_i3,blat.proc3829871.chain_2210,blat.proc3829871.chain_2212	6	STRG.2076.2,STRG.2076.6,blat.proc3829871.chain_2205,blat.proc3829871.chain_2211	4
scaffold_1	alt_acceptor	14355835	14355836	-	asmbl_906,asmbl_908	none	blat.proc3829887.chain_907,blat.proc3829887.chain_909	2	blat.proc3829887.chain_906	1
scaffold_3	retained_exon	14513521	14513574	-	asmbl_39334	none	STRG.3790.1	1	STRG.3790.3,Trinity_GG_19112_c0_g1_i1,blat.proc3829887.chain_3597	3
scaffold_25	alt_donor	4810463	4810464	+	asmbl_33528,asmbl_33530	none	STRG.27400.2,Trinity_GG_15078_c0_g1_i1,Trinity_GG_15078_c0_g1_i5,blat.proc3829885.chain_376,blat.proc3829885.chain_377	5	STRG.27400.1,Trinity_GG_15078_c0_g1_i6,blat.proc3829885.chain_375	3
scaffold_28	alternate_exon	9268632	9269134	+	asmbl_38473	none	STRG.29948.3,Trinity_GG_16535_c0_g1_i1,blat.proc3829885.chain_2950	3	STRG.29948.1,Trinity_GG_16535_c0_g1_i2,blat.proc3829885.chain_2951	3
scaffold_22	alt_donor	4412040	4412041	-	asmbl_30023	none	STRG.24848.3	1	STRG.24848.1,STRG.24848.2	2
scaffold_14	alternate_exon	15911175	15911213	-	asmbl_13743	none	STRG.17820.4,Trinity_GG_27009_c0_g1_i2,blat.proc3829895.chain_2506	3	STRG.17820.2,blat.proc3829895.chain_2505	2
scaffold_11	alternate_exon	12759563	12760009	-	asmbl_7080	none	STRG.14154.1,blat.proc3829893.chain_2595	2	STRG.14154.2,blat.proc3829893.chain_2596	2
scaffold_13	skipped_exon	902810	904334	-	asmbl_9340,asmbl_9341,asmbl_9342,asmbl_9344,asmbl_9345,asmbl_9346	none	STRG.15448.1,STRG.15448.3,STRG.15448.4,STRG.15448.5,STRG.15448.6,blat.proc3829895.chain_212,blat.proc3829895.chain_213,blat.proc3829895.chain_214,blat.proc3829895.chain_215	9	blat.proc3829895.chain_216	1
scaffold_7	alt_acceptor	10409923	10409924	+	asmbl_51004	none	STRG.9214.4	1	STRG.9214.2,STRG.9214.3,blat.proc3829875.chain_1588	3
scaffold_20	retained_intron	8323604	8323724	+	asmbl_25920,asmbl_25922	none	STRG.23363.1,blat.proc3829883.chain_442,blat.proc3829883.chain_443	3	STRG.23363.2,blat.proc3829883.chain_444	2
scaffold_14	alt_acceptor	15517183	15517184	-	asmbl_13710	none	STRG.17775.2	1	STRG.17775.3	1
scaffold_26	starts_in_intron	5982220	5982220	+	asmbl_35589	none	Trinity_GG_15650_c0_g1_i2,blat.proc3829885.chain_1322	2	STRG.28298.1,Trinity_GG_15650_c0_g1_i4,blat.proc3829885.chain_1321,blat.proc3829885.chain_1323,blat.proc3829885.chain_1324,blat.proc3829885.chain_1325	6
scaffold_26	alt_acceptor	9607191	9607192	+	asmbl_35766,asmbl_35769	none	STRG.28493.3,Trinity_GG_15716_c0_g1_i6,blat.proc3829885.chain_1426	3	STRG.28493.1,STRG.28493.2,Trinity_GG_15716_c0_g1_i2,blat.proc3829885.chain_1427	4
scaffold_12	alternate_exon	2662025	2662179	+	asmbl_8472	none	blat.proc3829877.chain_2972	1	STRG.14495.1,STRG.14495.3,blat.proc3829877.chain_2969,blat.proc3829877.chain_2970	4
scaffold_22	skipped_exon	4355625	4356493	+	asmbl_29277	none	STRG.24841.1,blat.proc3829883.chain_1879	2	STRG.24841.2,blat.proc3829883.chain_1877,blat.proc3829883.chain_1882	3
scaffold_5	alternate_exon	10528370	10528466	+	asmbl_44345,asmbl_44347	none	STRG.6331.1,STRG.6331.2,Trinity_GG_3449_c0_g1_i1,blat.proc3829873.chain_2469	4	Trinity_GG_3449_c0_g1_i2,blat.proc3829873.chain_2470	2
scaffold_27	alternate_exon	313421	316695	-	asmbl_36613,asmbl_36615,asmbl_36616	none	STRG.28538.2,STRG.28538.3,blat.proc3829901.chain_1673	3	STRG.28538.4,Trinity_GG_32948_c0_g1_i7,blat.proc3829901.chain_1670	3
scaffold_13	ends_in_intron	13709411	13709411	-	asmbl_10125	none	blat.proc3829895.chain_1161	1	blat.proc3829895.chain_1162	1
scaffold_2	starts_in_intron	6647540	6647540	-	asmbl_23244	none	blat.proc3829887.chain_1946	1	STRG.2025.1,STRG.2025.2,STRG.2025.3,blat.proc3829887.chain_1947,blat.proc3829887.chain_1948	5
scaffold_21	spliced_intron	4944460	4944587	+	asmbl_28557	none	STRG.24027.1,blat.proc3829883.chain_1124	2	blat.proc3829883.chain_1126	1
scaffold_13	alt_donor	8137526	8137527	+	asmbl_11095	none	STRG.16084.1,Trinity_GG_8853_c0_g1_i1,blat.proc3829879.chain_841	3	STRG.16084.2	1
scaffold_12	ends_in_intron	9539114	9539114	-	asmbl_7808	none	blat.proc3829893.chain_3321	1	STRG.14918.1,Trinity_GG_25335_c0_g1_i2,blat.proc3829893.chain_3322	3
scaffold_11	spliced_intron	9018053	9018198	-	asmbl_6886,asmbl_6888	none	STRG.13926.1,blat.proc3829893.chain_2278	2	STRG.13926.2,blat.proc3829893.chain_2279	2
scaffold_23	alt_acceptor	10739096	10739097	-	asmbl_31865	none	STRG.26245.1,blat.proc3829899.chain_3277	2	STRG.26245.2,blat.proc3829899.chain_3278	2
scaffold_10	alt_acceptor	7668129	7668130	+	asmbl_4567,asmbl_4569,asmbl_4570,asmbl_4572	none	STRG.12546.1,STRG.12546.2,blat.proc3829877.chain_1137,blat.proc3829877.chain_1138,blat.proc3829877.chain_1139	5	STRG.12546.3	1
scaffold_4	spliced_intron	12374031	12374180	-	asmbl_41649,asmbl_41651	none	STRG.4872.1,blat.proc3829889.chain_948,blat.proc3829889.chain_949	3	blat.proc3829889.chain_947	1
scaffold_18	ends_in_intron	3875545	3875545	+	asmbl_20513	none	STRG.21189.2,blat.proc3829881.chain_1995	2	STRG.21189.1,blat.proc3829881.chain_1997	2
scaffold_1	retained_intron	14274143	14274240	+	asmbl_2348	none	blat.proc3829871.chain_1119	1	STRG.1020.1,STRG.1020.2,blat.proc3829871.chain_1117,blat.proc3829871.chain_1118	4
scaffold_8	spliced_intron	6321681	6321793	-	asmbl_52871	none	STRG.10031.1	1	blat.proc3829891.chain_2198	1
scaffold_52	retained_intron	6286	6560	+	asmbl_46475	none	STRG.30038.3,Trinity_GG_16629_c0_g1_i5,blat.proc3829885.chain_3099	3	STRG.30038.1,STRG.30038.2,Trinity_GG_16629_c0_g1_i2,Trinity_GG_16629_c0_g1_i3,blat.proc3829885.chain_3100,blat.proc3829885.chain_3102	6
scaffold_16	alt_acceptor	325094	325095	-	asmbl_16030	none	STRG.19019.3	1	blat.proc3829897.chain_58,blat.proc3829897.chain_61	2
scaffold_10	retained_intron	11971085	11971272	+	asmbl_4790	none	Trinity_GG_7032_c0_g1_i9,blat.proc3829877.chain_1317	2	STRG.12831.1,blat.proc3829877.chain_1313,blat.proc3829877.chain_1319,blat.proc3829877.chain_1321,blat.proc3829877.chain_1322	5
scaffold_14	alt_donor	2389021	2389022	-	asmbl_12929	none	STRG.16841.1	1	STRG.16841.2,STRG.16841.3	2
scaffold_11	spliced_intron	2061239	2061594	+	asmbl_5313	none	STRG.13352.1	1	STRG.13352.2,Trinity_GG_7338_c0_g1_i6,blat.proc3829877.chain_1843,blat.proc3829877.chain_1844,blat.proc3829877.chain_1846	5
scaffold_18	alt_donor	7521959	7521960	+	asmbl_20774	none	STRG.21443.2,Trinity_GG_11838_c0_g1_i2,blat.proc3829881.chain_2398	3	STRG.21443.1,Trinity_GG_11838_c0_g1_i1,blat.proc3829881.chain_2399	3
scaffold_12	alt_donor	15087912	15087913	-	asmbl_8178,asmbl_8179	none	STRG.15303.1,STRG.15303.2,blat.proc3829893.chain_3691	3	blat.proc3829893.chain_3689	1
scaffold_15	starts_in_intron	9732226	9732226	-	asmbl_15426	none	blat.proc3829895.chain_3132	1	STRG.18480.1,STRG.18480.2,Trinity_GG_27344_c0_g1_i5,blat.proc3829895.chain_3131	4
scaffold_26	alt_acceptor	5515247	5515248	+	asmbl_35540	none	STRG.28247.2,blat.proc3829885.chain_1270	2	STRG.28247.1,blat.proc3829885.chain_1271	2
scaffold_24	starts_in_intron	2352529	2352529	+	asmbl_32100	none	blat.proc3829883.chain_3325	1	STRG.26433.1	1
scaffold_8	alt_donor	3615695	3615696	+	asmbl_51778	none	STRG.9854.3	1	STRG.9854.2,blat.proc3829875.chain_2279	2
scaffold_15	spliced_intron	9873560	9873882	+	asmbl_14371,asmbl_14373	none	STRG.18515.1,blat.proc3829879.chain_3062,blat.proc3829879.chain_3063	3	blat.proc3829879.chain_3065	1
scaffold_19	retained_intron	13102708	13103005	-	asmbl_21814	none	STRG.22619.1,blat.proc3829897.chain_3384	2	STRG.22619.2,Trinity_GG_29606_c0_g1_i2,blat.proc3829897.chain_3385	3
scaffold_6	retained_exon	17645345	17645565	-	asmbl_49129	none	STRG.8448.2	1	STRG.8448.1	1
scaffold_15	spliced_intron	2894311	2894447	-	asmbl_15071	none	STRG.18064.3	1	STRG.18064.2,Trinity_GG_27164_c0_g1_i1,Trinity_GG_27164_c0_g1_i2	3
scaffold_7	alt_donor	17339924	17339925	-	asmbl_50246,asmbl_50247,asmbl_50248	none	STRG.9603.1,STRG.9603.2,STRG.9603.4	3	STRG.9603.3	1
scaffold_1	alternate_exon	4873289	4873367	-	asmbl_223	none	STRG.296.1	1	STRG.296.2	1
scaffold_17	spliced_intron	9531820	9532877	+	asmbl_18228,asmbl_18233	none	STRG.20566.3,Trinity_GG_11250_c0_g1_i3,blat.proc3829881.chain_1351	3	blat.proc3829881.chain_1349,blat.proc3829881.chain_1353	2
scaffold_16	alt_acceptor	4046799	4046800	-	asmbl_16217	none	STRG.19208.2	1	STRG.19208.1	1
scaffold_3	spliced_intron	6183517	6183612	-	asmbl_38866	none	STRG.3262.3	1	STRG.3262.4,blat.proc3829887.chain_3018	2
scaffold_12	retained_exon	10003911	10004093	-	asmbl_7841,asmbl_7842	none	STRG.14963.2,STRG.14963.3,blat.proc3829893.chain_3284	3	STRG.14963.1	1
scaffold_4	spliced_intron	5651119	5651696	-	asmbl_41354,asmbl_41364	none	STRG.4469.3,blat.proc3829889.chain_607	2	STRG.4469.1,blat.proc3829889.chain_606,blat.proc3829889.chain_609	3
scaffold_19	starts_in_intron	11270040	11270040	+	asmbl_22493	none	STRG.22447.2,blat.proc3829881.chain_3366	2	STRG.22447.1,blat.proc3829881.chain_3367	2
scaffold_12	retained_intron	4204687	4204911	+	asmbl_8546	none	STRG.14587.1,Trinity_GG_8068_c0_g1_i2,blat.proc3829877.chain_3111	3	STRG.14587.2,Trinity_GG_8068_c0_g1_i1,blat.proc3829877.chain_3110	3
scaffold_9	retained_intron	6904964	6905139	-	asmbl_55061	none	Trinity_GG_23218_c0_g1_i4,blat.proc3829891.chain_3338	2	Trinity_GG_23218_c0_g1_i5,blat.proc3829891.chain_3339	2
scaffold_6	alt_acceptor	12412174	12412175	-	asmbl_48736,asmbl_48739	none	STRG.7990.2,STRG.7990.4,blat.proc3829891.chain_292,blat.proc3829891.chain_293	4	STRG.7990.1,STRG.7990.3,blat.proc3829891.chain_294	3
scaffold_11	alternate_exon	8046721	8046763	+	asmbl_5674	none	STRG.13797.2	1	STRG.13797.1,Trinity_GG_7599_c0_g1_i1,blat.proc3829877.chain_2272	3
scaffold_12	retained_intron	15014286	15014615	-	asmbl_8165,asmbl_8168	none	STRG.15285.2,blat.proc3829893.chain_3728,blat.proc3829893.chain_3730	3	STRG.15285.1,blat.proc3829893.chain_3727,blat.proc3829893.chain_3729	3
scaffold_5	retained_intron	14022515	14022662	+	asmbl_44564	none	STRG.6600.1,Trinity_GG_3557_c0_g1_i1,blat.proc3829873.chain_2659	3	STRG.6600.2,Trinity_GG_3557_c0_g1_i2,blat.proc3829873.chain_2660	3
scaffold_24	ends_in_intron	8715351	8715351	-	asmbl_33082	none	Trinity_GG_32034_c0_g1_i2,blat.proc3829901.chain_155	2	STRG.26860.1,blat.proc3829901.chain_156	2
scaffold_27	spliced_intron	3297546	3297880	-	asmbl_36859	none	STRG.28789.2	1	STRG.28789.1,Trinity_GG_33120_c1_g1_i1,blat.proc3829901.chain_1964	3
scaffold_5	alt_acceptor	6190113	6190114	+	asmbl_44069	none	STRG.6025.2,blat.proc3829873.chain_2222	2	STRG.6025.1,blat.proc3829873.chain_2223	2
scaffold_24	retained_exon	6432211	6432264	-	asmbl_32947	none	STRG.26677.1,blat.proc3829899.chain_3722	2	STRG.26677.2	1
scaffold_26	alt_donor	4689201	4689202	-	asmbl_34860,asmbl_34863,asmbl_34864	none	STRG.28179.2,STRG.28179.3,blat.proc3829901.chain_1382	3	STRG.28179.1,blat.proc3829901.chain_1383,blat.proc3829901.chain_1385	3
scaffold_2	retained_intron	18610276	18610515	-	asmbl_23818	none	STRG.2736.1,Trinity_GG_18522_c0_g1_i1,blat.proc3829887.chain_2560	3	STRG.2736.3,Trinity_GG_18522_c0_g1_i2,blat.proc3829887.chain_2559	3
scaffold_9	retained_intron	634983	635016	+	asmbl_53756	none	Trinity_GG_5954_c1_g1_i1,blat.proc3829875.chain_3223	2	STRG.10783.1	1
scaffold_27	starts_in_intron	5435388	5435388	-	asmbl_36967	none	blat.proc3829901.chain_2076	1	STRG.28942.1,blat.proc3829901.chain_2078	2
scaffold_18	ends_in_intron	2831782	2831782	+	asmbl_20451	none	STRG.21133.3,blat.proc3829881.chain_1925	2	STRG.21133.1,STRG.21133.2,blat.proc3829881.chain_1915,blat.proc3829881.chain_1916,blat.proc3829881.chain_1923	5
scaffold_13	alt_donor	10222043	10222044	-	asmbl_10012	none	STRG.16233.1,blat.proc3829895.chain_1005	2	STRG.16233.2	1
scaffold_3	spliced_intron	13160942	13161070	+	asmbl_40378,asmbl_40379,asmbl_40380,asmbl_40383	none	STRG.3678.1,STRG.3678.2,STRG.3678.3,STRG.3678.4,blat.proc3829873.chain_36,blat.proc3829873.chain_39	6	blat.proc3829873.chain_37	1
scaffold_27	alternate_exon	2832415	2836143	+	asmbl_36084	none	STRG.28748.2,blat.proc3829885.chain_1824	2	Trinity_GG_15915_c0_g1_i3,blat.proc3829885.chain_1825	2
scaffold_25	alt_acceptor	3086682	3086683	-	asmbl_34074,asmbl_34075,asmbl_34076	none	STRG.27230.1,STRG.27230.2,STRG.27230.3	3	blat.proc3829901.chain_488,blat.proc3829901.chain_489,blat.proc3829901.chain_490,blat.proc3829901.chain_491	4
scaffold_14	ends_in_intron	4237191	4237191	-	asmbl_13022	none	STRG.16966.2,Trinity_GG_26517_c0_g1_i1,blat.proc3829895.chain_1662	3	STRG.16966.1,Trinity_GG_26517_c0_g1_i2,blat.proc3829895.chain_1663	3
scaffold_12	retained_intron	15012722	15012846	-	asmbl_8166,asmbl_8168,asmbl_8169	none	STRG.15285.1,blat.proc3829893.chain_3728,blat.proc3829893.chain_3729,blat.proc3829893.chain_3731	4	STRG.15285.2,blat.proc3829893.chain_3727,blat.proc3829893.chain_3730	3
scaffold_6	spliced_intron	10393410	10393501	+	asmbl_47219	none	STRG.7876.1,blat.proc3829875.chain_254	2	Trinity_GG_4318_c0_g1_i1,blat.proc3829875.chain_255	2
scaffold_22	ends_in_intron	320922	320922	+	asmbl_29139	none	blat.proc3829883.chain_1732	1	STRG.24670.1,STRG.24670.2,STRG.24670.3,blat.proc3829883.chain_1728,blat.proc3829883.chain_1729,blat.proc3829883.chain_1730,blat.proc3829883.chain_1731	7
scaffold_8	alt_donor	15152781	15152782	+	asmbl_52379	none	STRG.10537.1,blat.proc3829875.chain_2990	2	STRG.10537.2,blat.proc3829875.chain_2991	2
scaffold_11	spliced_intron	4756626	4756833	+	asmbl_5480	none	STRG.13564.1,blat.proc3829877.chain_2053	2	blat.proc3829877.chain_2054	1
scaffold_12	starts_in_intron	4790595	4790595	+	asmbl_8582	none	Trinity_GG_8089_c0_g1_i2,blat.proc3829877.chain_3141	2	Trinity_GG_8089_c0_g1_i1,blat.proc3829877.chain_3140	2
scaffold_21	retained_intron	10469247	10469271	+	asmbl_28882	none	STRG.24495.1	1	STRG.24495.2	1
scaffold_4	alt_acceptor	13807112	13807113	+	asmbl_43158	none	STRG.5000.1,blat.proc3829873.chain_1342	2	STRG.5000.2,blat.proc3829873.chain_1341	2
scaffold_13	retained_exon	11377478	11378203	-	asmbl_10041,asmbl_10042	none	STRG.16287.5,Trinity_GG_26140_c0_g1_i9,blat.proc3829895.chain_1029	3	STRG.16287.7	1
scaffold_12	skipped_exon	10604821	10606018	+	asmbl_8913	none	STRG.15020.2,blat.proc3829877.chain_3509	2	STRG.15020.1,STRG.15020.4,blat.proc3829877.chain_3505,blat.proc3829877.chain_3508	4
scaffold_1	ends_in_intron	19042323	19042323	+	asmbl_2568	none	blat.proc3829871.chain_1391	1	STRG.1337.2,STRG.1337.3,blat.proc3829871.chain_1392	3
scaffold_13	retained_exon	2977501	2977565	-	asmbl_9458	none	STRG.15584.2	1	STRG.15584.3	1
scaffold_11	alt_donor	7351152	7351153	+	asmbl_5632	none	STRG.13738.1,Trinity_GG_7520_c0_g1_i1,blat.proc3829877.chain_2143	3	STRG.13738.2	1
scaffold_19	alternate_exon	4864607	4864705	+	asmbl_22147	none	STRG.22053.2	1	STRG.22053.1,STRG.22053.3,blat.proc3829881.chain_2973	3
scaffold_7	retained_intron	8296258	8297094	-	asmbl_49806	none	STRG.9056.3,Trinity_GG_22080_c0_g1_i2,blat.proc3829891.chain_1236	3	STRG.9056.1,blat.proc3829891.chain_1235	2
scaffold_3	spliced_intron	19882464	19882567	-	asmbl_39621	none	STRG.4100.3	1	blat.proc3829889.chain_138	1
scaffold_9	starts_in_intron	4206808	4206808	+	asmbl_53922	none	blat.proc3829875.chain_3428	1	STRG.11013.2,STRG.11013.3,STRG.11013.4,blat.proc3829875.chain_3427,blat.proc3829875.chain_3429	5
scaffold_19	alt_acceptor	12492134	12492135	+	asmbl_22620	none	blat.proc3829881.chain_3538	1	STRG.22568.1,STRG.22568.2,STRG.22568.4,STRG.22568.5,STRG.22568.6,blat.proc3829881.chain_3533,blat.proc3829881.chain_3535,blat.proc3829881.chain_3536,blat.proc3829881.chain_3537	9
scaffold_18	alt_donor	7521970	7521971	+	asmbl_20775	none	STRG.21443.1,Trinity_GG_11838_c0_g1_i1,blat.proc3829881.chain_2399	3	STRG.21443.2,Trinity_GG_11838_c0_g1_i2,blat.proc3829881.chain_2398	3
scaffold_15	alt_donor	397329	397330	+	asmbl_13916	none	STRG.17881.2	1	STRG.17881.1,blat.proc3829879.chain_2576	2
scaffold_10	ends_in_intron	9369419	9369419	+	asmbl_4651	none	blat.proc3829877.chain_1195	1	STRG.12680.1,blat.proc3829877.chain_1197,blat.proc3829877.chain_1198	3
scaffold_17	ends_in_intron	14327913	14327913	+	asmbl_18506	none	blat.proc3829881.chain_1735	1	STRG.20898.1,blat.proc3829881.chain_1737	2
scaffold_11	alternate_exon	2299115	2299182	-	asmbl_6470	none	STRG.13380.2,blat.proc3829893.chain_1834	2	STRG.13380.1,blat.proc3829893.chain_1835	2
scaffold_20	retained_intron	11682548	11683305	-	asmbl_27110	none	STRG.23663.2,Trinity_GG_30185_c0_g2_i1	2	STRG.23663.1,blat.proc3829899.chain_663	2
scaffold_12	alt_acceptor	9538300	9538301	-	asmbl_7805	none	STRG.14917.1,blat.proc3829893.chain_3257	2	STRG.14917.2	1
scaffold_9	retained_intron	16569591	16569995	+	asmbl_54574	none	Trinity_GG_6586_c0_g1_i21,blat.proc3829877.chain_554	2	STRG.11798.1,STRG.11798.2,Trinity_GG_6586_c0_g1_i10,Trinity_GG_6586_c0_g1_i15,Trinity_GG_6586_c0_g1_i5,Trinity_GG_6586_c0_g1_i6,blat.proc3829877.chain_551,blat.proc3829877.chain_553,blat.proc3829877.chain_555,blat.proc3829877.chain_556,blat.proc3829877.chain_557	11
scaffold_17	skipped_exon	8216381	8219279	-	asmbl_19127	none	STRG.20434.1,blat.proc3829897.chain_1355	2	STRG.20434.2	1
scaffold_5	spliced_intron	16314540	16314719	+	asmbl_44743,asmbl_44745,asmbl_44746	none	STRG.6820.1,blat.proc3829873.chain_2898,blat.proc3829873.chain_2899,blat.proc3829873.chain_2901	4	blat.proc3829873.chain_2900	1
scaffold_15	retained_exon	1963609	1963689	+	asmbl_13980	none	STRG.17971.3,blat.proc3829879.chain_2658	2	STRG.17971.1,STRG.17971.2	2
scaffold_21	alt_acceptor	7491270	7491271	+	asmbl_28757	none	STRG.24265.1,blat.proc3829883.chain_1412	2	blat.proc3829883.chain_1413	1
scaffold_23	starts_in_intron	6620284	6620284	+	asmbl_30923	none	STRG.25983.2,blat.proc3829883.chain_2870	2	STRG.25983.1,Trinity_GG_14339_c0_g1_i2,blat.proc3829883.chain_2871,blat.proc3829883.chain_2872,blat.proc3829883.chain_2874	5
scaffold_20	ends_in_intron	8582471	8582471	-	asmbl_26927	none	blat.proc3829899.chain_323	1	STRG.23398.1,Trinity_GG_30007_c1_g1_i1,blat.proc3829899.chain_321,blat.proc3829899.chain_322	4
scaffold_6	skipped_exon	15362089	15363299	+	asmbl_47598	none	STRG.8276.1,blat.proc3829875.chain_685	2	blat.proc3829875.chain_686	1
scaffold_21	ends_in_intron	10332710	10332710	-	asmbl_28063	none	blat.proc3829899.chain_1622	1	STRG.24486.3	1
scaffold_26	alt_acceptor	5891349	5891350	+	asmbl_35578	none	STRG.28280.1,blat.proc3829885.chain_1312	2	blat.proc3829885.chain_1314	1
scaffold_19	alt_acceptor	1483180	1483181	+	asmbl_22038,asmbl_22040	none	STRG.21897.1,blat.proc3829881.chain_2865	2	STRG.21897.2	1
scaffold_1	starts_in_intron	11095806	11095806	+	asmbl_2047	none	Trinity_GG_451_c0_g1_i4	1	STRG.726.2	1
scaffold_21	alternate_exon	1756164	1759301	-	asmbl_27444	none	STRG.23809.2,Trinity_GG_30286_c3_g1_i1,blat.proc3829899.chain_891	3	STRG.23809.3	1
scaffold_22	retained_intron	483798	484218	+	asmbl_29148	none	STRG.24679.3,Trinity_GG_13642_c0_g1_i3,blat.proc3829883.chain_1726	3	STRG.24679.1	1
scaffold_11	starts_in_intron	16471918	16471918	-	asmbl_7199,asmbl_7202	none	STRG.14328.4,blat.proc3829893.chain_2747	2	blat.proc3829893.chain_2746	1
scaffold_2	alt_acceptor	16079556	16079557	-	asmbl_23680,asmbl_23681	none	STRG.2557.1,STRG.2557.3	2	STRG.2557.2,blat.proc3829887.chain_2393	2
scaffold_17	alt_acceptor	1447704	1447705	-	asmbl_18761	none	STRG.19973.1	1	blat.proc3829897.chain_936	1
scaffold_2	starts_in_intron	14554963	14554963	+	asmbl_24987	none	STRG.2454.3	1	STRG.2454.1,STRG.2454.2	2
scaffold_7	ends_in_intron	4076387	4076387	-	asmbl_49668	none	blat.proc3829891.chain_1108	1	STRG.8797.1,STRG.8797.2,blat.proc3829891.chain_1109	3
scaffold_13	alternate_exon	9339619	9341204	+	asmbl_11185	none	STRG.16189.1	1	STRG.16189.2	1
scaffold_28	alt_donor	540487	540488	-	asmbl_37234,asmbl_37236	none	STRG.29258.2,blat.proc3829901.chain_2297	2	STRG.29258.1,STRG.29258.3,blat.proc3829901.chain_2295,blat.proc3829901.chain_2296	4
scaffold_14	spliced_intron	12753400	12753507	-	asmbl_13581,asmbl_13582,asmbl_13583	none	STRG.17572.1,STRG.17572.2,STRG.17572.3,blat.proc3829895.chain_2350,blat.proc3829895.chain_2351,blat.proc3829895.chain_2354	6	blat.proc3829895.chain_2352	1
scaffold_28	spliced_intron	295538	295617	+	asmbl_37961,asmbl_37962,asmbl_37963,asmbl_37964	none	STRG.29243.1,STRG.29243.2,STRG.29243.3,blat.proc3829885.chain_2398,blat.proc3829885.chain_2399,blat.proc3829885.chain_2401	6	blat.proc3829885.chain_2400	1
scaffold_17	starts_in_intron	1302183	1302183	-	asmbl_18742	none	blat.proc3829897.chain_933	1	STRG.19954.1,blat.proc3829897.chain_927,blat.proc3829897.chain_930,blat.proc3829897.chain_931,blat.proc3829897.chain_932	5
scaffold_10	starts_in_intron	4050276	4050276	+	asmbl_4384	none	Trinity_GG_6793_c1_g1_i1,blat.proc3829877.chain_911	2	STRG.12236.1,Trinity_GG_6793_c1_g1_i2,blat.proc3829877.chain_912	3
scaffold_5	alt_donor	18929524	18929525	-	asmbl_46256	none	STRG.7002.2	1	STRG.7002.1,Trinity_GG_20903_c0_g1_i1,blat.proc3829889.chain_2972	3
scaffold_10	retained_intron	4524826	4524957	-	asmbl_3211	none	blat.proc3829893.chain_702	1	blat.proc3829893.chain_701	1
scaffold_20	spliced_intron	10135588	10137307	+	asmbl_26094	none	blat.proc3829883.chain_665	1	STRG.23544.1,Trinity_GG_13031_c0_g1_i1,blat.proc3829883.chain_663	3
scaffold_5	alt_acceptor	2166925	2166926	-	asmbl_45266	none	STRG.5744.3	1	STRG.5744.2	1
scaffold_12	starts_in_intron	14125907	14125907	-	asmbl_8121,asmbl_8122	none	blat.proc3829893.chain_3710,blat.proc3829893.chain_3712	2	STRG.15232.2,blat.proc3829893.chain_3711	2
scaffold_8	alt_acceptor	6162712	6162713	-	asmbl_52854	none	STRG.10012.3	1	STRG.10012.1,Trinity_GG_22628_c0_g1_i1,blat.proc3829891.chain_2213,blat.proc3829891.chain_2214,blat.proc3829891.chain_2215,blat.proc3829891.chain_2217,blat.proc3829891.chain_2218	7
scaffold_4	retained_exon	7151965	7151997	+	asmbl_42802,asmbl_42805,asmbl_42806	none	STRG.4558.4,STRG.4558.5,blat.proc3829873.chain_883,blat.proc3829873.chain_884	4	STRG.4558.1,STRG.4558.2,STRG.4558.3	3
scaffold_9	starts_in_intron	5311505	5311505	-	asmbl_54965	none	blat.proc3829891.chain_3279	1	STRG.11100.1,blat.proc3829891.chain_3278	2
scaffold_25	spliced_intron	9554175	9556117	+	asmbl_33819	none	STRG.27755.1,blat.proc3829885.chain_779	2	STRG.27755.3,blat.proc3829885.chain_777	2
scaffold_5	retained_intron	5972401	5972548	+	asmbl_44044	none	STRG.6001.1	1	STRG.6001.2	1
scaffold_2	starts_in_intron	16471984	16471984	-	asmbl_23710	none	blat.proc3829887.chain_2428	1	STRG.2584.1,blat.proc3829887.chain_2427,blat.proc3829887.chain_2430	3
scaffold_6	alternate_exon	12632330	12633966	+	asmbl_47358	none	STRG.8015.2,blat.proc3829875.chain_334	2	STRG.8015.3,Trinity_GG_4352_c0_g1_i3,blat.proc3829875.chain_333	3
scaffold_13	starts_in_intron	5698238	5698238	-	asmbl_9667	none	blat.proc3829895.chain_621	1	STRG.15858.1,blat.proc3829895.chain_622	2
scaffold_18	starts_in_intron	2753615	2753615	-	asmbl_19771	none	STRG.21124.1,blat.proc3829897.chain_2024	2	STRG.21124.2,Trinity_GG_28853_c0_g1_i1,blat.proc3829897.chain_2025	3
scaffold_1	alternate_exon	20133622	20135003	-	asmbl_1170	none	STRG.1381.1	1	STRG.1381.4,STRG.1381.5	2
scaffold_13	starts_in_intron	6817151	6817151	+	asmbl_10967	none	Trinity_GG_8764_c0_g1_i1,blat.proc3829879.chain_638	2	STRG.15956.1,blat.proc3829879.chain_637	2
scaffold_14	alt_acceptor	11573661	11573662	-	asmbl_13480,asmbl_13486	none	STRG.17490.1,STRG.17490.3,blat.proc3829895.chain_2172,blat.proc3829895.chain_2179	4	STRG.17490.4,STRG.17490.5,blat.proc3829895.chain_2173,blat.proc3829895.chain_2180	4
scaffold_9	ends_in_intron	9605092	9605092	-	asmbl_55179	none	Trinity_GG_23259_c1_g1_i2,blat.proc3829891.chain_3422	2	STRG.11317.2	1
scaffold_1	ends_in_intron	6278361	6278361	-	asmbl_352	none	STRG.425.5	1	STRG.425.1,STRG.425.2,STRG.425.3,STRG.425.4,Trinity_GG_17251_c1_g1_i1,blat.proc3829887.chain_336	6
scaffold_23	alt_acceptor	1119985	1119986	+	asmbl_30612	none	STRG.25570.1,blat.proc3829883.chain_2448	2	STRG.25570.2,blat.proc3829883.chain_2449	2
scaffold_4	alt_acceptor	8628161	8628162	+	asmbl_42901	none	STRG.4684.1,blat.proc3829873.chain_998	2	STRG.4684.2,blat.proc3829873.chain_999	2
scaffold_13	starts_in_intron	7270199	7270199	-	asmbl_9830	none	blat.proc3829895.chain_807	1	STRG.16009.1,blat.proc3829895.chain_808,blat.proc3829895.chain_809,blat.proc3829895.chain_811	4
scaffold_23	starts_in_intron	1585161	1585161	+	asmbl_30651	none	Trinity_GG_14154_c0_g1_i1,blat.proc3829883.chain_2526	2	STRG.25614.1,Trinity_GG_14154_c0_g1_i2,blat.proc3829883.chain_2527	3
scaffold_9	alt_acceptor	1232208	1232209	+	asmbl_53784	none	STRG.10820.1	1	STRG.10820.2	1
scaffold_10	ends_in_intron	12999658	12999658	-	asmbl_3751	none	blat.proc3829893.chain_1395	1	STRG.12900.2	1
scaffold_9	retained_exon	3198855	3198923	+	asmbl_53861	none	STRG.10927.2,Trinity_GG_6041_c0_g1_i3,blat.proc3829875.chain_3350	3	STRG.10927.1,blat.proc3829875.chain_3351	2
scaffold_17	retained_exon	2354832	2355463	+	asmbl_17766,asmbl_17769	none	STRG.20017.2,STRG.20017.4	2	STRG.20017.5,STRG.20017.7	2
scaffold_3	retained_intron	14183210	14183724	-	asmbl_39278,asmbl_39279,asmbl_39282	none	STRG.3759.1,STRG.3759.4,Trinity_GG_19089_c0_g1_i3,Trinity_GG_19089_c0_g1_i6,blat.proc3829887.chain_3544	5	STRG.3759.2,STRG.3759.3,STRG.3759.5,Trinity_GG_19089_c0_g1_i5,blat.proc3829887.chain_3542	5
scaffold_2	alt_acceptor	5901425	5901426	-	asmbl_23189	none	STRG.1974.1,Trinity_GG_18104_c0_g1_i2,blat.proc3829887.chain_1818	3	STRG.1974.2,blat.proc3829887.chain_1819	2
scaffold_21	retained_intron	5110399	5110504	-	asmbl_27631	none	blat.proc3829899.chain_1100	1	STRG.24033.1,blat.proc3829899.chain_1099	2
scaffold_4	alternate_exon	16650240	16661305	+	asmbl_43329	none	blat.proc3829873.chain_1485	1	Trinity_GG_2887_c0_g1_i1,blat.proc3829873.chain_1486	2
scaffold_28	alt_donor	8153975	8153976	+	asmbl_38422	none	STRG.29862.1	1	STRG.29862.2	1
scaffold_13	alt_donor	2500660	2500661	+	asmbl_10600	none	STRG.15545.1,Trinity_GG_8558_c0_g1_i2,blat.proc3829879.chain_265	3	STRG.15545.2,Trinity_GG_8558_c0_g1_i1,blat.proc3829879.chain_264	3
scaffold_10	spliced_intron	4149920	4150006	-	asmbl_3181	none	STRG.12246.2	1	STRG.12246.1,Trinity_GG_23850_c1_g1_i1,blat.proc3829893.chain_716	3
scaffold_10	spliced_intron	8894400	8894642	-	asmbl_3533,asmbl_3534,asmbl_3535,asmbl_3536,asmbl_3537,asmbl_3538,asmbl_3539,asmbl_3540,asmbl_3541,asmbl_3542	none	STRG.12629.1,blat.proc3829893.chain_1127,blat.proc3829893.chain_1129,blat.proc3829893.chain_1130,blat.proc3829893.chain_1131,blat.proc3829893.chain_1132,blat.proc3829893.chain_1133,blat.proc3829893.chain_1134,blat.proc3829893.chain_1135,blat.proc3829893.chain_1136	10	blat.proc3829893.chain_1128	1
scaffold_8	starts_in_intron	3664109	3664109	+	asmbl_51782	none	Trinity_GG_5479_c0_g1_i1,blat.proc3829875.chain_2335	2	STRG.9848.1,blat.proc3829875.chain_2334	2
scaffold_2	starts_in_intron	16000263	16000263	+	asmbl_25116	none	Trinity_GG_1436_c0_g1_i1,blat.proc3829871.chain_2718	2	Trinity_GG_1436_c0_g1_i2,blat.proc3829871.chain_2719	2
scaffold_25	alternate_exon	6525506	6525744	-	asmbl_34337	none	blat.proc3829901.chain_848	1	blat.proc3829901.chain_847	1
scaffold_15	spliced_intron	6080628	6080840	-	asmbl_15252	none	STRG.18259.1,blat.proc3829895.chain_3029	2	blat.proc3829895.chain_3028	1
scaffold_15	spliced_intron	4469772	4470220	-	asmbl_15151	none	STRG.18158.1,Trinity_GG_27228_c0_g1_i2,blat.proc3829895.chain_2905	3	Trinity_GG_27228_c0_g1_i1,blat.proc3829895.chain_2906	2
scaffold_3	starts_in_intron	7287380	7287380	-	asmbl_38915	none	blat.proc3829887.chain_3068	1	STRG.3325.1,STRG.3325.2,STRG.3325.3,blat.proc3829887.chain_3070,blat.proc3829887.chain_3071	5
scaffold_22	alt_donor	508979	508980	-	asmbl_29852,asmbl_29853,asmbl_29854,asmbl_29855,asmbl_29860,asmbl_29863,asmbl_29865	none	STRG.24685.2,STRG.24685.3,STRG.24685.4,Trinity_GG_30818_c0_g1_i13,Trinity_GG_30818_c0_g1_i17,Trinity_GG_30818_c0_g1_i19,Trinity_GG_30818_c0_g1_i8,blat.proc3829899.chain_1823,blat.proc3829899.chain_1824,blat.proc3829899.chain_1825,blat.proc3829899.chain_1827,blat.proc3829899.chain_1830,blat.proc3829899.chain_1831,blat.proc3829899.chain_1836	14	STRG.24685.5	1
scaffold_28	retained_intron	5228162	5228266	-	asmbl_37579	none	blat.proc3829901.chain_2677	1	STRG.29650.1,blat.proc3829901.chain_2671,blat.proc3829901.chain_2673	3
scaffold_18	spliced_intron	1434071	1434201	+	asmbl_20377	none	STRG.21021.2,Trinity_GG_11530_c0_g1_i2,blat.proc3829881.chain_1809	3	Trinity_GG_11530_c0_g1_i1,blat.proc3829881.chain_1810	2
scaffold_4	retained_intron	19379192	19379340	+	asmbl_43481	none	STRG.5522.1	1	Trinity_GG_2994_c1_g1_i2,blat.proc3829873.chain_1676,blat.proc3829873.chain_1677,blat.proc3829873.chain_1678	4
scaffold_19	ends_in_intron	12451866	12451866	-	asmbl_21704	none	Trinity_GG_29565_c1_g1_i1,blat.proc3829897.chain_3266	2	STRG.22565.1,STRG.22565.2	2
scaffold_13	alt_acceptor	13283823	13283824	+	asmbl_11364	none	STRG.16387.1,blat.proc3829879.chain_1158	2	STRG.16387.2	1
scaffold_4	alt_acceptor	18117238	18117239	-	asmbl_42098	none	STRG.5417.2	1	STRG.5417.1	1
scaffold_4	alt_donor	7087747	7087748	+	asmbl_42793,asmbl_42795,asmbl_42796	none	STRG.4545.1,STRG.4545.2,STRG.4545.3,blat.proc3829873.chain_943,blat.proc3829873.chain_945	5	STRG.4545.4	1
scaffold_4	spliced_intron	12457553	12457685	+	asmbl_43058	none	STRG.4879.1,blat.proc3829873.chain_1225	2	blat.proc3829873.chain_1226	1
scaffold_16	ends_in_intron	290892	290892	+	asmbl_16808	none	blat.proc3829879.chain_3640	1	STRG.19012.1,STRG.19012.2,Trinity_GG_10430_c0_g1_i2,blat.proc3829879.chain_3638,blat.proc3829879.chain_3639,blat.proc3829879.chain_3641	6
scaffold_1	alt_acceptor	6283222	6283223	-	asmbl_341,asmbl_342,asmbl_349	none	STRG.425.2,blat.proc3829887.chain_330,blat.proc3829887.chain_333	3	blat.proc3829887.chain_325	1
scaffold_3	starts_in_intron	16941229	16941229	-	asmbl_39470	none	blat.proc3829889.chain_13	1	STRG.3938.1,blat.proc3829889.chain_12	2
scaffold_5	retained_intron	15766384	15766471	+	asmbl_44679,asmbl_44680,asmbl_44681	none	Trinity_GG_3692_c0_g1_i6,blat.proc3829873.chain_2874,blat.proc3829873.chain_2875,blat.proc3829873.chain_2879	4	STRG.6763.1,blat.proc3829873.chain_2876,blat.proc3829873.chain_2877,blat.proc3829873.chain_2880,blat.proc3829873.chain_2882	5
scaffold_3	skipped_exon	11608270	11609155	-	asmbl_39128	none	STRG.3592.2,blat.proc3829887.chain_3364,blat.proc3829887.chain_3365	3	STRG.3592.1,blat.proc3829887.chain_3366	2
scaffold_2	alt_acceptor	18045479	18045480	+	asmbl_25254	none	STRG.2694.2	1	STRG.2694.1,Trinity_GG_1527_c0_g1_i1	2
scaffold_4	alternate_exon	4414581	4414846	+	asmbl_42578	none	Trinity_GG_2404_c0_g1_i14,blat.proc3829873.chain_692	2	STRG.4344.1,STRG.4344.2,STRG.4344.4,blat.proc3829873.chain_682,blat.proc3829873.chain_683,blat.proc3829873.chain_685,blat.proc3829873.chain_691,blat.proc3829873.chain_697	8
scaffold_20	retained_intron	10861471	10862078	+	asmbl_26150,asmbl_26152	none	STRG.23601.1,Trinity_GG_13067_c0_g1_i3,Trinity_GG_13067_c0_g1_i4,blat.proc3829883.chain_745,blat.proc3829883.chain_746	5	blat.proc3829883.chain_748	1
scaffold_7	ends_in_intron	737005	737005	-	asmbl_49515	none	STRG.8599.2,Trinity_GG_21932_c0_g1_i2,blat.proc3829891.chain_957	3	STRG.8599.1	1
scaffold_3	spliced_intron	10304998	10305493	+	asmbl_40217	none	STRG.3466.3	1	STRG.3466.2,Trinity_GG_1968_c0_g2_i3,Trinity_GG_1968_c3_g1_i1,blat.proc3829871.chain_3657,blat.proc3829871.chain_3660	5
scaffold_10	starts_in_intron	11598072	11598072	+	asmbl_4749	none	STRG.12807.5,Trinity_GG_7057_c1_g1_i1,blat.proc3829877.chain_1367	3	STRG.12807.1,STRG.12807.2	2
scaffold_10	spliced_intron	13458298	13458388	-	asmbl_3785	none	STRG.12925.1,blat.proc3829893.chain_1410	2	STRG.12925.2,blat.proc3829893.chain_1409	2
scaffold_10	alt_donor	10640545	10640546	-	asmbl_3658	none	STRG.12752.2	1	STRG.12752.1	1
scaffold_6	alt_acceptor	4125980	4125981	-	asmbl_48230	none	STRG.7384.2	1	STRG.7384.3	1
scaffold_20	starts_in_intron	7269010	7269010	+	asmbl_25873	none	Trinity_GG_12828_c0_g1_i3,blat.proc3829883.chain_358	2	STRG.23283.1,STRG.23283.2,STRG.23283.3,blat.proc3829883.chain_359,blat.proc3829883.chain_360	5
scaffold_19	alt_acceptor	8478076	8478077	-	asmbl_21508	none	STRG.22304.2,blat.proc3829897.chain_3013	2	STRG.22304.1,blat.proc3829897.chain_3014	2
scaffold_14	alternate_exon	14107026	14107084	-	asmbl_13662	none	STRG.17663.1	1	STRG.17663.2,STRG.17663.3	2
scaffold_18	ends_in_intron	179368	179368	+	asmbl_20293,asmbl_20294	none	STRG.20962.2,STRG.20962.3,Trinity_GG_11535_c0_g1_i2,Trinity_GG_11535_c0_g1_i6,blat.proc3829881.chain_1816,blat.proc3829881.chain_1818	6	STRG.20962.1,STRG.20962.4,blat.proc3829881.chain_1817,blat.proc3829881.chain_1819,blat.proc3829881.chain_1820	5
scaffold_11	alternate_exon	3553093	3553141	+	asmbl_5413	none	blat.proc3829877.chain_1948	1	STRG.13470.1,blat.proc3829877.chain_1947,blat.proc3829877.chain_1949	3
scaffold_4	ends_in_intron	18995299	18995299	+	asmbl_43462	none	blat.proc3829873.chain_1711	1	STRG.5475.1	1
scaffold_22	spliced_intron	9540632	9540817	-	asmbl_30311	none	blat.proc3829899.chain_2385	1	STRG.25272.1,blat.proc3829899.chain_2386	2
scaffold_3	spliced_intron	3271219	3271370	-	asmbl_38721,asmbl_38722	none	STRG.3088.2,blat.proc3829887.chain_2793	2	Trinity_GG_18653_c0_g1_i2,blat.proc3829887.chain_2795	2
scaffold_7	retained_exon	5928804	5928823	+	asmbl_50715	none	blat.proc3829875.chain_1202	1	Trinity_GG_4833_c0_g1_i1,blat.proc3829875.chain_1203	2
scaffold_14	alt_acceptor	11139409	11139410	-	asmbl_13429	none	STRG.17433.2,blat.proc3829895.chain_2146	2	blat.proc3829895.chain_2148	1
scaffold_6	alt_acceptor	12534635	12534636	-	asmbl_48755	none	STRG.8003.2,blat.proc3829891.chain_297	2	STRG.8003.1,STRG.8003.3,blat.proc3829891.chain_298	3
scaffold_5	retained_intron	10195447	10195577	-	asmbl_45705,asmbl_45709	none	blat.proc3829889.chain_2390,blat.proc3829889.chain_2391	2	STRG.6312.1,blat.proc3829889.chain_2386,blat.proc3829889.chain_2387,blat.proc3829889.chain_2388,blat.proc3829889.chain_2389,blat.proc3829889.chain_2393,blat.proc3829889.chain_2394	7
scaffold_5	alternate_exon	5042497	5042890	+	asmbl_43992	none	Trinity_GG_3261_c3_g1_i1,blat.proc3829873.chain_2114,blat.proc3829873.chain_2117	3	STRG.5951.1,STRG.5951.2,blat.proc3829873.chain_2115	3
scaffold_16	spliced_intron	6193425	6193670	+	asmbl_17084,asmbl_17090	none	STRG.19373.2,blat.proc3829881.chain_127,blat.proc3829881.chain_128	3	STRG.19373.1,STRG.19373.3,STRG.19373.4,blat.proc3829881.chain_125,blat.proc3829881.chain_126,blat.proc3829881.chain_131	6
scaffold_5	alt_acceptor	4683049	4683050	-	asmbl_45372	none	STRG.5919.4	1	STRG.5919.1,blat.proc3829889.chain_2027,blat.proc3829889.chain_2028,blat.proc3829889.chain_2029,blat.proc3829889.chain_2030,blat.proc3829889.chain_2032,blat.proc3829889.chain_2033,blat.proc3829889.chain_2035	8
scaffold_1	retained_intron	20338943	20339721	+	asmbl_2602,asmbl_2604,asmbl_2605,asmbl_2608,asmbl_2615	none	STRG.1398.2,STRG.1398.3,STRG.1398.6,Trinity_GG_815_c2_g1_i8,blat.proc3829871.chain_1445,blat.proc3829871.chain_1446,blat.proc3829871.chain_1450	7	blat.proc3829871.chain_1453	1
scaffold_1	retained_intron	12916164	12916271	+	asmbl_2259,asmbl_2260	none	STRG.919.2,blat.proc3829871.chain_974	2	STRG.919.1,blat.proc3829871.chain_976	2
scaffold_13	spliced_intron	3027963	3028113	-	asmbl_9468	none	STRG.15593.2	1	STRG.15593.1,blat.proc3829895.chain_370	2
scaffold_26	starts_in_intron	8592162	8592162	-	asmbl_35011	none	blat.proc3829901.chain_1553	1	STRG.28423.1,blat.proc3829901.chain_1552	2
scaffold_5	alternate_exon	15706367	15707705	+	asmbl_44673	none	STRG.6756.2	1	STRG.6756.3	1
scaffold_4	alternate_exon	16650240	16650248	+	asmbl_43329	none	blat.proc3829873.chain_1485	1	STRG.5252.2	1
scaffold_14	alt_acceptor	1970217	1970218	+	asmbl_11815	none	STRG.16808.1,blat.proc3829879.chain_1532	2	STRG.16808.2	1
scaffold_19	skipped_exon	13267387	13268218	-	asmbl_21858	none	STRG.22634.2,blat.proc3829897.chain_3418	2	STRG.22634.1,blat.proc3829897.chain_3419	2
scaffold_15	alt_acceptor	15156180	15156181	+	asmbl_14665,asmbl_14668	none	Trinity_GG_10325_c0_g1_i8,blat.proc3829879.chain_3400,blat.proc3829879.chain_3402	3	STRG.18895.5,Trinity_GG_10325_c0_g1_i7,blat.proc3829879.chain_3399,blat.proc3829879.chain_3401	4
scaffold_3	alt_acceptor	17362106	17362107	-	asmbl_39494,asmbl_39497,asmbl_39504	none	STRG.3972.1,blat.proc3829889.chain_22,blat.proc3829889.chain_25	3	blat.proc3829889.chain_29	1
scaffold_24	spliced_intron	3700697	3701118	+	asmbl_32171	none	STRG.26537.1,blat.proc3829883.chain_3449,blat.proc3829883.chain_3450	3	blat.proc3829883.chain_3451	1
scaffold_13	skipped_exon	16437030	16437484	+	asmbl_11553,asmbl_11557	none	STRG.16684.1,STRG.16684.2,Trinity_GG_9187_c0_g1_i6,blat.proc3829879.chain_1411	4	blat.proc3829879.chain_1410	1
scaffold_17	alt_acceptor	940074	940075	+	asmbl_17707	none	STRG.19921.2,blat.proc3829881.chain_772	2	STRG.19921.1,STRG.19921.3,blat.proc3829881.chain_773	3
scaffold_19	alt_acceptor	12974849	12974850	-	asmbl_21784,asmbl_21785,asmbl_21786,asmbl_21787,asmbl_21790,asmbl_21791,asmbl_21793	none	STRG.22606.2,STRG.22606.3,STRG.22606.4,STRG.22606.5,Trinity_GG_29578_c0_g1_i1,Trinity_GG_29578_c0_g1_i2,Trinity_GG_29578_c0_g1_i6,Trinity_GG_29578_c0_g1_i8,blat.proc3829897.chain_3318,blat.proc3829897.chain_3319,blat.proc3829897.chain_3320,blat.proc3829897.chain_3324,blat.proc3829897.chain_3325	13	STRG.22606.1	1
scaffold_7	spliced_intron	9583534	9583622	+	asmbl_50966	none	STRG.9138.2,blat.proc3829875.chain_1604	2	STRG.9138.1,Trinity_GG_5076_c0_g1_i1,blat.proc3829875.chain_1605	3
scaffold_5	spliced_intron	10853174	10853266	+	asmbl_44366,asmbl_44368,asmbl_44370,asmbl_44371,asmbl_44372,asmbl_44373	none	STRG.6350.1,STRG.6350.3,STRG.6350.4,blat.proc3829873.chain_2512,blat.proc3829873.chain_2513,blat.proc3829873.chain_2515,blat.proc3829873.chain_2516	7	blat.proc3829873.chain_2514	1
scaffold_13	skipped_exon	6046307	6048622	-	asmbl_9728,asmbl_9729	none	STRG.15900.2,blat.proc3829895.chain_628,blat.proc3829895.chain_630	3	STRG.15900.4,blat.proc3829895.chain_629	2
scaffold_27	alt_acceptor	6907785	6907786	+	asmbl_36372	none	STRG.29033.2	1	STRG.29033.1,blat.proc3829885.chain_2166	2
scaffold_22	alternate_exon	2394597	2403753	+	asmbl_29234,asmbl_29235	none	blat.proc3829883.chain_1745,blat.proc3829883.chain_1746	2	blat.proc3829883.chain_1747	1
scaffold_9	alt_donor	18446673	18446674	-	asmbl_55677	none	STRG.11884.2,blat.proc3829893.chain_289	2	STRG.11884.1,blat.proc3829893.chain_290	2
scaffold_5	spliced_intron	17368979	17369287	-	asmbl_46178	none	STRG.6906.1,blat.proc3829889.chain_2922	2	STRG.6906.2,Trinity_GG_20872_c0_g1_i1,blat.proc3829889.chain_2923	3
scaffold_23	starts_in_intron	10740363	10740363	-	asmbl_31867	none	STRG.26245.2	1	STRG.26245.1,blat.proc3829899.chain_3277,blat.proc3829899.chain_3278	3
scaffold_1	ends_in_intron	7794001	7794001	+	asmbl_1917	none	blat.proc3829871.chain_598	1	STRG.536.1,STRG.536.2,blat.proc3829871.chain_596,blat.proc3829871.chain_597	4
scaffold_4	spliced_intron	5653238	5653334	-	asmbl_41355,asmbl_41357,asmbl_41359,asmbl_41363,asmbl_41368	none	STRG.4469.1,blat.proc3829889.chain_603,blat.proc3829889.chain_606,blat.proc3829889.chain_612,blat.proc3829889.chain_613	5	STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_604,blat.proc3829889.chain_608,blat.proc3829889.chain_611	6
scaffold_27	retained_intron	6782164	6782627	-	asmbl_37035	none	Trinity_GG_33279_c0_g1_i1,blat.proc3829901.chain_2192	2	STRG.29027.2,blat.proc3829901.chain_2190	2
scaffold_27	retained_intron	9882673	9882736	-	asmbl_37107	none	STRG.29199.1	1	blat.proc3829901.chain_2288	1
scaffold_25	alternate_exon	3292529	3293378	-	asmbl_34110	none	STRG.27260.5,blat.proc3829901.chain_582	2	STRG.27260.1,STRG.27260.3,blat.proc3829901.chain_581	3
scaffold_22	retained_intron	5922960	5923153	+	asmbl_29362,asmbl_29363	none	STRG.24922.2,Trinity_GG_13792_c0_g1_i3,blat.proc3829883.chain_1978,blat.proc3829883.chain_1979	4	STRG.24922.1,Trinity_GG_13792_c0_g1_i1,blat.proc3829883.chain_1977	3
scaffold_28	alt_acceptor	4207222	4207223	+	asmbl_38214,asmbl_38215,asmbl_38217	none	STRG.29593.1,STRG.29593.5,Trinity_GG_16421_c0_g1_i1,blat.proc3829885.chain_2723	4	STRG.29593.4,blat.proc3829885.chain_2724	2
scaffold_14	retained_intron	3590570	3591023	+	asmbl_11931	none	STRG.16928.2,Trinity_GG_9328_c1_g1_i1,blat.proc3829879.chain_1680	3	STRG.16928.1	1
scaffold_10	retained_intron	8917894	8918183	+	asmbl_4618,asmbl_4619	none	STRG.12631.1,blat.proc3829877.chain_1155,blat.proc3829877.chain_1156	3	blat.proc3829877.chain_1157	1
scaffold_2	alt_acceptor	5706615	5706616	-	asmbl_23181	none	STRG.1957.2,blat.proc3829887.chain_1852	2	STRG.1957.1,blat.proc3829887.chain_1851,blat.proc3829887.chain_1853	3
scaffold_17	alt_donor	13610398	13610399	+	asmbl_18459	none	STRG.20825.1	1	STRG.20825.2	1
scaffold_10	alternate_exon	1430914	1430986	-	asmbl_2968	none	STRG.12007.2	1	STRG.12007.3,blat.proc3829893.chain_404	2
scaffold_17	alt_acceptor	2534348	2534349	-	asmbl_18803	none	blat.proc3829897.chain_986	1	STRG.20035.1,STRG.20035.2,blat.proc3829897.chain_984,blat.proc3829897.chain_985	4
scaffold_1	alt_donor	16687154	16687155	-	asmbl_1008	none	STRG.1172.2	1	STRG.1172.1,blat.proc3829887.chain_1047	2
scaffold_5	alternate_exon	13826263	13826341	-	asmbl_45950	none	STRG.6589.2	1	STRG.6589.1	1
scaffold_6	alternate_exon	12555119	12555189	-	asmbl_48762	none	blat.proc3829891.chain_322	1	STRG.8010.1,STRG.8010.2,blat.proc3829891.chain_318,blat.proc3829891.chain_321	4
scaffold_12	retained_exon	9798633	9798739	+	asmbl_8843	none	STRG.14935.1,blat.proc3829877.chain_3422	2	STRG.14935.2	1
scaffold_18	alt_donor	7867713	7867714	+	asmbl_20822,asmbl_20831	none	STRG.21477.3,STRG.21477.6,Trinity_GG_11877_c0_g1_i7,blat.proc3829881.chain_2468	4	STRG.21477.1,STRG.21477.2,Trinity_GG_11877_c0_g1_i12,Trinity_GG_11877_c0_g1_i14,blat.proc3829881.chain_2469,blat.proc3829881.chain_2471,blat.proc3829881.chain_2474,blat.proc3829881.chain_2475	8
scaffold_10	retained_intron	16475883	16476026	-	asmbl_3908,asmbl_3911	none	STRG.13105.2,Trinity_GG_24363_c0_g1_i1,blat.proc3829893.chain_1614	3	STRG.13105.3	1
scaffold_16	alt_acceptor	325306	325307	-	asmbl_16026	none	blat.proc3829897.chain_58,blat.proc3829897.chain_61	2	STRG.19019.3	1
scaffold_5	alt_acceptor	13227872	13227873	+	asmbl_44534	none	STRG.6554.1	1	STRG.6554.2,blat.proc3829873.chain_2679	2
scaffold_3	alt_donor	14259715	14259716	+	asmbl_40468	none	blat.proc3829873.chain_106	1	STRG.3764.2,blat.proc3829873.chain_104	2
scaffold_15	retained_intron	4117643	4117871	-	asmbl_15130,asmbl_15132	none	STRG.18141.1,STRG.18141.3,Trinity_GG_27184_c0_g1_i1,blat.proc3829895.chain_2828	4	STRG.18141.2,blat.proc3829895.chain_2826	2
scaffold_9	alt_acceptor	6745775	6745776	-	asmbl_55032,asmbl_55033,asmbl_55035	none	STRG.11176.1,STRG.11176.3,blat.proc3829891.chain_3303,blat.proc3829891.chain_3304,blat.proc3829891.chain_3306	5	STRG.11176.2	1
scaffold_15	spliced_intron	15409801	15410185	+	asmbl_14722	none	STRG.18921.8	1	blat.proc3829879.chain_3516	1
scaffold_3	alt_acceptor	13160466	13160467	+	asmbl_40378,asmbl_40380	none	STRG.3678.1,STRG.3678.2,blat.proc3829873.chain_39	3	STRG.3678.3,STRG.3678.4,blat.proc3829873.chain_36,blat.proc3829873.chain_37	4
scaffold_13	alt_acceptor	3352875	3352876	-	asmbl_9495	none	STRG.15631.1,blat.proc3829895.chain_390	2	STRG.15631.2	1
scaffold_8	retained_exon	11742081	11742171	-	asmbl_53157	none	STRG.10368.2,blat.proc3829891.chain_2441	2	STRG.10368.1,blat.proc3829891.chain_2442	2
scaffold_2	spliced_intron	5360023	5360118	+	asmbl_24440	none	STRG.1943.1,blat.proc3829871.chain_1975	2	STRG.1943.2,blat.proc3829871.chain_1976	2
scaffold_13	alt_donor	4508841	4508842	+	asmbl_10787	none	STRG.15762.1,blat.proc3829879.chain_372	2	STRG.15762.2,blat.proc3829879.chain_373	2
scaffold_9	starts_in_intron	6920278	6920278	-	asmbl_55067	none	blat.proc3829891.chain_3348	1	STRG.11195.1,STRG.11195.2,blat.proc3829891.chain_3350,blat.proc3829891.chain_3351,blat.proc3829891.chain_3352	5
scaffold_4	alt_acceptor	17524250	17524251	-	asmbl_42031	none	STRG.5338.2,blat.proc3829889.chain_1405	2	STRG.5338.1,blat.proc3829889.chain_1404	2
scaffold_27	spliced_intron	3000638	3000932	+	asmbl_36109,asmbl_36110,asmbl_36111,asmbl_36113,asmbl_36117,asmbl_36118,asmbl_36119,asmbl_36121,asmbl_36122	none	STRG.28767.1,STRG.28767.2,STRG.28767.3,STRG.28767.4,STRG.28767.5,Trinity_GG_15918_c0_g1_i4,blat.proc3829885.chain_1838,blat.proc3829885.chain_1839,blat.proc3829885.chain_1841,blat.proc3829885.chain_1842,blat.proc3829885.chain_1843,blat.proc3829885.chain_1846,blat.proc3829885.chain_1847	13	blat.proc3829885.chain_1849	1
scaffold_11	alternate_exon	11635943	11636184	+	asmbl_5949,asmbl_5950	none	blat.proc3829877.chain_2570,blat.proc3829877.chain_2572	2	blat.proc3829877.chain_2571,blat.proc3829877.chain_2573,blat.proc3829877.chain_2574	3
scaffold_11	retained_intron	4759832	4760026	-	asmbl_6607	none	blat.proc3829893.chain_2022	1	STRG.13565.1,blat.proc3829893.chain_2020,blat.proc3829893.chain_2021,blat.proc3829893.chain_2023	4
scaffold_13	starts_in_intron	4017936	4017936	+	asmbl_10732	none	Trinity_GG_8638_c0_g1_i2,blat.proc3829879.chain_408	2	blat.proc3829879.chain_409,blat.proc3829879.chain_410	2
scaffold_5	alternate_exon	10162929	10162965	+	asmbl_44328	none	STRG.6309.1,blat.proc3829873.chain_2450	2	STRG.6309.2,STRG.6309.3,blat.proc3829873.chain_2448,blat.proc3829873.chain_2449	4
scaffold_5	retained_exon	6064795	6064853	+	asmbl_44058,asmbl_44059	none	STRG.6021.1,STRG.6021.3,blat.proc3829873.chain_2216,blat.proc3829873.chain_2217	4	STRG.6021.2	1
scaffold_5	alternate_exon	19274911	19275250	+	asmbl_44966	none	STRG.7020.4	1	STRG.7020.1,Trinity_GG_3869_c0_g1_i3,blat.proc3829873.chain_3182	3
scaffold_19	retained_intron	11489772	11489947	+	asmbl_22509	none	Trinity_GG_12429_c0_g1_i1,blat.proc3829881.chain_3408	2	STRG.22478.1,Trinity_GG_12429_c0_g1_i3,Trinity_GG_12429_c0_g1_i4,blat.proc3829881.chain_3407,blat.proc3829881.chain_3410	5
scaffold_8	retained_intron	5433999	5434119	+	asmbl_51872,asmbl_51873	none	blat.proc3829875.chain_2415,blat.proc3829875.chain_2416	2	STRG.9965.1,STRG.9965.2,blat.proc3829875.chain_2414	3
scaffold_18	spliced_intron	3096365	3096617	-	asmbl_19782,asmbl_19783	none	STRG.21147.1,STRG.21147.2	2	blat.proc3829897.chain_2012	1
scaffold_20	starts_in_intron	8578195	8578195	-	asmbl_26921	none	blat.proc3829899.chain_320	1	STRG.23398.1,blat.proc3829899.chain_318,blat.proc3829899.chain_319	3
scaffold_1	spliced_intron	4239169	4239798	+	asmbl_1642,asmbl_1650	none	STRG.253.2,blat.proc3829871.chain_224,blat.proc3829871.chain_233	3	blat.proc3829871.chain_227,blat.proc3829871.chain_230	2
scaffold_22	starts_in_intron	9859299	9859299	-	asmbl_30331	none	Trinity_GG_31168_c0_g1_i1	1	STRG.25303.1	1
scaffold_21	starts_in_intron	7490947	7490947	+	asmbl_28758	none	blat.proc3829883.chain_1413	1	STRG.24265.1,blat.proc3829883.chain_1412	2
scaffold_16	retained_exon	1777656	1777691	+	asmbl_16874,asmbl_16875,asmbl_16881	none	STRG.19095.1,STRG.19095.2,Trinity_GG_10467_c0_g1_i2,Trinity_GG_10467_c0_g1_i3,blat.proc3829879.chain_3694,blat.proc3829879.chain_3696	6	STRG.19095.3,Trinity_GG_10467_c0_g1_i1,blat.proc3829879.chain_3695	3
scaffold_3	alt_donor	19886464	19886465	-	asmbl_39618	none	blat.proc3829889.chain_144	1	STRG.4100.1,STRG.4100.4,Trinity_GG_19264_c1_g1_i1,blat.proc3829889.chain_141	4
scaffold_2	retained_intron	7218817	7218918	+	asmbl_24571	none	STRG.2054.6,Trinity_GG_1174_c0_g1_i12,blat.proc3829871.chain_2152	3	STRG.2054.1,STRG.2054.5,Trinity_GG_1174_c0_g1_i13,Trinity_GG_1174_c0_g1_i2,Trinity_GG_1174_c0_g1_i4,blat.proc3829871.chain_2145,blat.proc3829871.chain_2147,blat.proc3829871.chain_2150,blat.proc3829871.chain_2153	9
scaffold_1	ends_in_intron	8632804	8632804	-	asmbl_469,asmbl_470	none	Trinity_GG_17312_c0_g1_i2,blat.proc3829887.chain_445,blat.proc3829887.chain_451	3	STRG.568.2,blat.proc3829887.chain_449	2
scaffold_13	alternate_exon	11379298	11381632	-	asmbl_10048	none	STRG.16287.4,Trinity_GG_26140_c0_g1_i8	2	STRG.16287.6,Trinity_GG_26140_c0_g1_i2,blat.proc3829895.chain_1027	3
scaffold_17	ends_in_intron	13526453	13526453	+	asmbl_18451	none	blat.proc3829881.chain_1676	1	STRG.20837.1	1
scaffold_5	starts_in_intron	6962299	6962299	-	asmbl_45547	none	blat.proc3829889.chain_2201	1	STRG.6104.1,blat.proc3829889.chain_2200	2
scaffold_1	ends_in_intron	7174415	7174415	+	asmbl_1881	none	blat.proc3829871.chain_575	1	STRG.509.1,blat.proc3829871.chain_573	2
scaffold_4	alt_donor	16317634	16317635	+	asmbl_43299,asmbl_43300,asmbl_43301	none	STRG.5205.1,STRG.5205.2,STRG.5205.3,blat.proc3829873.chain_1510,blat.proc3829873.chain_1512	5	STRG.5205.4	1
scaffold_8	starts_in_intron	9126232	9126232	-	asmbl_53002	none	blat.proc3829891.chain_2334	1	STRG.10161.1,STRG.10161.2,STRG.10161.3,STRG.10161.4,blat.proc3829891.chain_2335,blat.proc3829891.chain_2336	6
scaffold_13	retained_intron	5208212	5208649	+	asmbl_10812	none	STRG.15811.2,Trinity_GG_8694_c0_g1_i2,blat.proc3829879.chain_503	3	STRG.15811.1,Trinity_GG_8694_c0_g1_i1,blat.proc3829879.chain_502	3
scaffold_10	alt_acceptor	6705951	6705952	-	asmbl_3411	none	blat.proc3829893.chain_978	1	STRG.12492.1,blat.proc3829893.chain_977	2
scaffold_11	ends_in_intron	12071643	12071643	-	asmbl_7055	none	Trinity_GG_24914_c1_g1_i2	1	STRG.14117.2,blat.proc3829893.chain_2541	2
scaffold_1	alt_acceptor	14320862	14320863	+	asmbl_2356	none	STRG.1024.2,blat.proc3829871.chain_1128	2	STRG.1024.1,blat.proc3829871.chain_1129	2
scaffold_9	ends_in_intron	1827369	1827369	-	asmbl_54816	none	Trinity_GG_23060_c0_g1_i1,blat.proc3829891.chain_3045	2	blat.proc3829891.chain_3046	1
scaffold_20	alternate_exon	6771038	6771054	+	asmbl_25835	none	STRG.23245.1,blat.proc3829883.chain_366	2	STRG.23245.2	1
scaffold_14	ends_in_intron	8095428	8095428	-	asmbl_13232	none	blat.proc3829895.chain_1890	1	STRG.17212.2,STRG.17212.3,STRG.17212.4,Trinity_GG_26645_c0_g1_i1,Trinity_GG_26645_c0_g1_i4,Trinity_GG_26645_c0_g1_i5,blat.proc3829895.chain_1888,blat.proc3829895.chain_1891,blat.proc3829895.chain_1893	9
scaffold_1	alternate_exon	18339438	18339505	+	asmbl_2541	none	STRG.1291.3	1	STRG.1291.1,STRG.1291.2,STRG.1291.4,blat.proc3829871.chain_1250,blat.proc3829871.chain_1251	5
scaffold_23	ends_in_intron	6688724	6688724	+	asmbl_30944,asmbl_30945	none	STRG.25982.2,blat.proc3829883.chain_2850	2	blat.proc3829883.chain_2849	1
scaffold_12	alternate_exon	16530065	16530125	-	asmbl_8268	none	Trinity_GG_25644_c0_g1_i1,blat.proc3829895.chain_121	2	STRG.15397.1,Trinity_GG_25644_c0_g1_i2,blat.proc3829895.chain_122	3
scaffold_2	spliced_intron	14220832	14221010	-	asmbl_23595,asmbl_23597,asmbl_23599,asmbl_23600	none	STRG.2413.1,blat.proc3829887.chain_2199,blat.proc3829887.chain_2200,blat.proc3829887.chain_2201,blat.proc3829887.chain_2203	5	blat.proc3829887.chain_2202	1
scaffold_19	alt_donor	11560030	11560031	-	asmbl_21634	none	Trinity_GG_29507_c0_g1_i2,blat.proc3829897.chain_3143	2	STRG.22479.1,Trinity_GG_29507_c0_g1_i3,Trinity_GG_29507_c0_g1_i5,blat.proc3829897.chain_3144,blat.proc3829897.chain_3145	5
scaffold_2	alt_acceptor	14449211	14449212	-	asmbl_23616	none	blat.proc3829887.chain_2218	1	STRG.2446.1,blat.proc3829887.chain_2219	2
scaffold_19	retained_intron	2781526	2781716	+	asmbl_22080	none	blat.proc3829881.chain_2913	1	STRG.21950.1,STRG.21950.2,STRG.21950.3,STRG.21950.4,STRG.21950.5	5
scaffold_13	alt_acceptor	5381906	5381907	+	asmbl_10825	none	STRG.15819.2	1	STRG.15819.1,blat.proc3829879.chain_506	2
scaffold_8	alt_acceptor	4961211	4961212	-	asmbl_52810	none	blat.proc3829891.chain_2102,blat.proc3829891.chain_2105	2	STRG.9963.1,blat.proc3829891.chain_2103,blat.proc3829891.chain_2104,blat.proc3829891.chain_2107	4
scaffold_23	retained_intron	7686588	7687381	+	asmbl_31011,asmbl_31012,asmbl_31014	none	STRG.26063.3,Trinity_GG_14406_c0_g1_i1,Trinity_GG_14406_c0_g1_i5,blat.proc3829883.chain_2976,blat.proc3829883.chain_2979	5	STRG.26063.5,STRG.26063.7,Trinity_GG_14406_c0_g1_i4,blat.proc3829883.chain_2978	4
scaffold_4	retained_intron	6188631	6188800	-	asmbl_41404,asmbl_41405	none	STRG.4487.2,blat.proc3829889.chain_543	2	STRG.4487.3,Trinity_GG_19491_c0_g1_i3,blat.proc3829889.chain_542	3
scaffold_4	alternate_exon	3260040	3265000	-	asmbl_41176	none	blat.proc3829889.chain_355	1	Trinity_GG_19379_c1_g1_i2,blat.proc3829889.chain_356	2
scaffold_21	starts_in_intron	830866	830866	+	asmbl_28334,asmbl_28335	none	blat.proc3829883.chain_910,blat.proc3829883.chain_912	2	STRG.23762.1,STRG.23762.2,blat.proc3829883.chain_911,blat.proc3829883.chain_913	4
scaffold_13	retained_intron	11598971	11599668	+	asmbl_11271	none	Trinity_GG_8948_c2_g1_i1,blat.proc3829879.chain_1024	2	STRG.16295.2,STRG.16295.4,blat.proc3829879.chain_1015,blat.proc3829879.chain_1020,blat.proc3829879.chain_1022,blat.proc3829879.chain_1023	6
scaffold_10	retained_intron	326050	326526	-	asmbl_2848	none	STRG.11908.2,Trinity_GG_23604_c0_g1_i1,blat.proc3829893.chain_293	3	STRG.11908.1,Trinity_GG_23604_c0_g1_i2,blat.proc3829893.chain_292	3
scaffold_10	alternate_exon	9071161	9071185	-	asmbl_3579	none	STRG.12647.1	1	STRG.12647.2,STRG.12647.3	2
scaffold_12	alt_donor	10004223	10004224	-	asmbl_7842	none	STRG.14963.3	1	STRG.14963.1	1
scaffold_6	spliced_intron	9170836	9170927	+	asmbl_47160	none	STRG.7785.1,Trinity_GG_4279_c0_g1_i1,blat.proc3829875.chain_171	3	Trinity_GG_4279_c0_g1_i2,blat.proc3829875.chain_170	2
scaffold_13	skipped_exon	11585750	11588600	+	asmbl_11274,asmbl_11279	none	STRG.16295.1,blat.proc3829879.chain_1014,blat.proc3829879.chain_1023	3	STRG.16295.2,STRG.16295.3,blat.proc3829879.chain_1015,blat.proc3829879.chain_1018,blat.proc3829879.chain_1019,blat.proc3829879.chain_1020	6
scaffold_17	retained_intron	8846095	8846264	+	asmbl_18151,asmbl_18154	none	STRG.20483.2,Trinity_GG_11225_c0_g1_i6,blat.proc3829881.chain_1283	3	STRG.20483.1,blat.proc3829881.chain_1284,blat.proc3829881.chain_1285	3
scaffold_11	alt_acceptor	335229	335230	+	asmbl_5246	none	STRG.13256.1,blat.proc3829877.chain_1776	2	STRG.13256.2,STRG.13256.3,blat.proc3829877.chain_1774,blat.proc3829877.chain_1777	4
scaffold_19	starts_in_intron	12134909	12134909	+	asmbl_22564,asmbl_22565	none	STRG.22531.3,Trinity_GG_12454_c1_g1_i3,blat.proc3829881.chain_3459	3	STRG.22531.1,STRG.22531.2,Trinity_GG_12454_c1_g1_i6,Trinity_GG_12454_c1_g1_i7,blat.proc3829881.chain_3458,blat.proc3829881.chain_3460	6
scaffold_8	alternate_exon	17683985	17685668	-	asmbl_53492	none	STRG.10682.1,Trinity_GG_22921_c0_g1_i6,blat.proc3829891.chain_2786	3	STRG.10682.2,Trinity_GG_22921_c0_g1_i1,blat.proc3829891.chain_2785	3
scaffold_16	alternate_exon	5507384	5508750	-	asmbl_16292,asmbl_16294	none	STRG.19300.1,STRG.19300.2	2	blat.proc3829897.chain_295	1
scaffold_15	alt_donor	489741	489742	+	asmbl_13921	none	STRG.17896.1	1	STRG.17896.2,Trinity_GG_9840_c0_g1_i3,blat.proc3829879.chain_2581	3
scaffold_18	starts_in_intron	2079626	2079626	-	asmbl_19739	none	blat.proc3829897.chain_2000	1	Trinity_GG_28837_c0_g1_i2,blat.proc3829897.chain_2001	2
scaffold_19	alt_donor	12007710	12007711	-	asmbl_21653,asmbl_21654	none	Trinity_GG_29534_c0_g1_i2,Trinity_GG_29534_c0_g1_i4,blat.proc3829897.chain_3201,blat.proc3829897.chain_3202	4	STRG.22509.1	1
scaffold_9	skipped_exon	4898175	4899091	+	asmbl_53948	none	blat.proc3829875.chain_3518	1	STRG.11053.1,STRG.11053.2	2
scaffold_19	alt_acceptor	3561159	3561160	+	asmbl_22130	none	STRG.22033.2	1	STRG.22033.1	1
scaffold_21	alt_acceptor	5545679	5545680	+	asmbl_28598	none	blat.proc3829883.chain_1234	1	STRG.24076.1,blat.proc3829883.chain_1236	2
scaffold_15	alt_acceptor	15233211	15233212	-	asmbl_15780	none	STRG.18900.3	1	STRG.18900.1,blat.proc3829895.chain_3677	2
scaffold_16	retained_exon	325601	325669	-	asmbl_16025,asmbl_16026	none	STRG.19019.1,blat.proc3829897.chain_60,blat.proc3829897.chain_61	3	STRG.19019.2,STRG.19019.3,blat.proc3829897.chain_59,blat.proc3829897.chain_62	4
scaffold_15	starts_in_intron	11304765	11304765	+	asmbl_14441	none	blat.proc3829879.chain_3188	1	STRG.18591.1,blat.proc3829879.chain_3184,blat.proc3829879.chain_3185,blat.proc3829879.chain_3187	4
scaffold_13	alt_acceptor	1238502	1238503	+	asmbl_10514,asmbl_10515,asmbl_10517,asmbl_10518,asmbl_10521,asmbl_10525,asmbl_10526	none	STRG.15478.1,STRG.15478.2,STRG.15478.4,STRG.15478.5,STRG.15478.6,Trinity_GG_8526_c0_g2_i3,blat.proc3829879.chain_204,blat.proc3829879.chain_205,blat.proc3829879.chain_207,blat.proc3829879.chain_208	10	STRG.15478.7	1
scaffold_1	spliced_intron	8645480	8646817	-	asmbl_473,asmbl_482,asmbl_483	none	STRG.572.1,STRG.572.2,blat.proc3829887.chain_454,blat.proc3829887.chain_457,blat.proc3829887.chain_458	5	STRG.572.3,Trinity_GG_17313_c1_g1_i1,blat.proc3829887.chain_453,blat.proc3829887.chain_456	4
scaffold_13	retained_intron	8163692	8164029	-	asmbl_9902	none	blat.proc3829895.chain_766	1	STRG.16095.1,blat.proc3829895.chain_765	2
scaffold_18	alternate_exon	3917647	3920951	-	asmbl_19819	none	blat.proc3829897.chain_2089	1	STRG.21192.1	1
scaffold_11	retained_intron	3901228	3901407	+	asmbl_5430	none	STRG.13497.1	1	STRG.13497.2	1
scaffold_1	starts_in_intron	11394319	11394319	+	asmbl_2083	none	Trinity_GG_444_c1_g1_i1	1	STRG.746.1,blat.proc3829871.chain_764,blat.proc3829871.chain_766	3
scaffold_1	retained_intron	14355835	14355968	-	asmbl_907	none	blat.proc3829887.chain_908	1	blat.proc3829887.chain_907	1
scaffold_13	alt_donor	88317	88318	+	asmbl_10427	none	STRG.15412.4	1	STRG.15412.1,blat.proc3829879.chain_80,blat.proc3829879.chain_81	3
scaffold_15	spliced_intron	2434220	2434241	-	asmbl_15010	none	blat.proc3829895.chain_2649	1	Trinity_GG_27090_c0_g1_i5	1
scaffold_18	alternate_exon	10929704	10929818	-	asmbl_20149	none	STRG.21647.2	1	STRG.21647.1,blat.proc3829897.chain_2473	2
scaffold_52	alt_acceptor	2534	2535	-	asmbl_46483,asmbl_46484,asmbl_46486	none	STRG.30037.1,STRG.30037.3,Trinity_GG_33859_c0_g1_i2,blat.proc3829901.chain_3146,blat.proc3829901.chain_3149	5	STRG.30037.2,blat.proc3829901.chain_3148	2
scaffold_2	alternate_exon	14131180	14131231	-	asmbl_23576	none	STRG.2406.2	1	STRG.2406.1,blat.proc3829887.chain_2196,blat.proc3829887.chain_2197,blat.proc3829887.chain_2198	4
scaffold_6	skipped_exon	11482302	11482900	+	asmbl_47264,asmbl_47267	none	STRG.7936.1,blat.proc3829875.chain_299,blat.proc3829875.chain_304	3	STRG.7936.4	1
scaffold_9	spliced_intron	119370	119545	+	asmbl_53734	none	STRG.10764.1	1	Trinity_GG_5979_c0_g1_i4	1
scaffold_7	retained_intron	12082375	12082576	+	asmbl_51097	none	Trinity_GG_5111_c0_g1_i2,blat.proc3829875.chain_1656	2	STRG.9310.2,Trinity_GG_5111_c0_g1_i3,blat.proc3829875.chain_1657	3
scaffold_1	retained_exon	44039	44086	-	asmbl_2	none	STRG.19.1,blat.proc3829885.chain_3732	2	STRG.19.3	1
scaffold_26	alt_acceptor	5404291	5404292	+	asmbl_35513	none	STRG.28230.1	1	blat.proc3829885.chain_1236	1
scaffold_26	spliced_intron	9775764	9775968	+	asmbl_35787,asmbl_35789,asmbl_35790	none	STRG.28501.5,blat.proc3829885.chain_1532,blat.proc3829885.chain_1535	3	STRG.28501.1,STRG.28501.10,STRG.28501.3,STRG.28501.6,STRG.28501.9,Trinity_GG_15770_c0_g1_i1,blat.proc3829885.chain_1533,blat.proc3829885.chain_1538	8
scaffold_24	alternate_exon	10133801	10138153	+	asmbl_32544	none	STRG.26962.2,Trinity_GG_14876_c0_g1_i2,blat.proc3829885.chain_41,blat.proc3829885.chain_42	4	STRG.26962.3	1
scaffold_14	ends_in_intron	404719	404719	+	asmbl_11731	none	blat.proc3829879.chain_1473	1	STRG.16722.1,STRG.16722.2,STRG.16722.3,STRG.16722.4,STRG.16722.5,STRG.16722.6,STRG.16722.7,blat.proc3829879.chain_1463,blat.proc3829879.chain_1464,blat.proc3829879.chain_1467,blat.proc3829879.chain_1470	11
scaffold_18	skipped_exon	9258671	9259564	-	asmbl_20094	none	STRG.21559.4	1	STRG.21559.1,Trinity_GG_29070_c0_g1_i5,blat.proc3829897.chain_2410	3
scaffold_5	alt_acceptor	9085016	9085017	+	asmbl_44271	none	blat.proc3829873.chain_2424	1	blat.proc3829873.chain_2418	1
scaffold_2	alt_donor	14228601	14228602	-	asmbl_23601	none	blat.proc3829887.chain_2295	1	STRG.2415.1	1
scaffold_28	alt_acceptor	3745698	3745699	-	asmbl_37490	none	STRG.29558.2	1	STRG.29558.1,blat.proc3829901.chain_2664	2
scaffold_11	alt_donor	14532679	14532680	+	asmbl_6066	none	STRG.14239.3,Trinity_GG_7860_c0_g1_i6,blat.proc3829877.chain_2745	3	blat.proc3829877.chain_2743	1
scaffold_2	spliced_intron	7324810	7325889	+	asmbl_24597	none	STRG.2062.3,Trinity_GG_1176_c0_g1_i1,blat.proc3829871.chain_2160	3	STRG.2062.1,Trinity_GG_1176_c0_g1_i2,blat.proc3829871.chain_2162	3
scaffold_15	alt_acceptor	5322411	5322412	-	asmbl_15203,asmbl_15207	none	STRG.18211.2,Trinity_GG_27242_c0_g1_i2,blat.proc3829895.chain_2926,blat.proc3829895.chain_2929	4	blat.proc3829895.chain_2925	1
scaffold_2	starts_in_intron	17837404	17837404	-	asmbl_23769	none	Trinity_GG_18481_c0_g1_i3,blat.proc3829887.chain_2497	2	STRG.2671.1,blat.proc3829887.chain_2495,blat.proc3829887.chain_2496	3
scaffold_15	alternate_exon	15160412	15160733	+	asmbl_14669	none	STRG.18895.5	1	blat.proc3829879.chain_3399,blat.proc3829879.chain_3402	2
scaffold_17	starts_in_intron	9566961	9566961	+	asmbl_18239,asmbl_18241	none	STRG.20564.2,Trinity_GG_11277_c0_g1_i3,blat.proc3829881.chain_1401	3	STRG.20564.1,Trinity_GG_11277_c0_g1_i1,blat.proc3829881.chain_1399	3
scaffold_15	skipped_exon	15409801	15410182	+	asmbl_14716	none	STRG.18921.7,blat.proc3829879.chain_3514	2	STRG.18921.2,STRG.18921.3,STRG.18921.9,blat.proc3829879.chain_3515,blat.proc3829879.chain_3517	5
scaffold_3	retained_exon	6037861	6038979	-	asmbl_38834,asmbl_38836,asmbl_38837	none	STRG.3255.2,STRG.3255.5,STRG.3255.7	3	STRG.3255.1	1
scaffold_6	alternate_exon	10915754	10916227	+	asmbl_47249	none	STRG.7900.1,Trinity_GG_4305_c0_g1_i2,blat.proc3829875.chain_231	3	STRG.7900.3,Trinity_GG_4305_c0_g1_i1,blat.proc3829875.chain_230	3
scaffold_12	alt_acceptor	12309133	12309134	+	asmbl_8950,asmbl_8952	none	STRG.15117.1,STRG.15117.2,blat.proc3829877.chain_3596	3	STRG.15117.5	1
scaffold_2	starts_in_intron	10654961	10654961	+	asmbl_24750,asmbl_24751	none	STRG.2226.2,blat.proc3829871.chain_2318	2	STRG.2226.1,blat.proc3829871.chain_2320	2
scaffold_2	spliced_intron	7469630	7469727	-	asmbl_23283,asmbl_23285,asmbl_23286,asmbl_23289	none	STRG.2075.2,STRG.2075.3,STRG.2075.4,Trinity_GG_18127_c0_g1_i18,blat.proc3829887.chain_1892,blat.proc3829887.chain_1893	6	blat.proc3829887.chain_1898	1
scaffold_12	retained_intron	6426744	6427106	-	asmbl_7664	none	STRG.14731.5,Trinity_GG_25243_c1_g1_i1,blat.proc3829893.chain_3152	3	STRG.14731.4	1
scaffold_27	spliced_intron	358421	358649	-	asmbl_36630	none	STRG.28548.1,STRG.28548.2,Trinity_GG_32944_c0_g1_i2,blat.proc3829901.chain_1664	4	Trinity_GG_32944_c0_g1_i1,blat.proc3829901.chain_1663	2
scaffold_2	alt_donor	2995509	2995510	-	asmbl_22974,asmbl_22976	none	STRG.1746.1,STRG.1746.2	2	STRG.1746.3	1
scaffold_12	ends_in_intron	6398316	6398316	-	asmbl_7661	none	Trinity_GG_25242_c1_g1_i1,blat.proc3829893.chain_3148	2	STRG.14724.1,blat.proc3829893.chain_3146,blat.proc3829893.chain_3147	3
scaffold_19	spliced_intron	13010845	13011231	-	asmbl_21794,asmbl_21799,asmbl_21800	none	STRG.22610.1,STRG.22610.4,blat.proc3829897.chain_3402,blat.proc3829897.chain_3404	4	STRG.22610.2,STRG.22610.3,blat.proc3829897.chain_3403	3
scaffold_3	retained_intron	18346320	18346422	-	asmbl_39561	none	blat.proc3829873.chain_417	1	STRG.4038.1,blat.proc3829889.chain_77	2
scaffold_15	alt_acceptor	1588805	1588806	+	asmbl_13960	none	STRG.17949.2,blat.proc3829879.chain_2644	2	STRG.17949.1,blat.proc3829879.chain_2643	2
scaffold_17	retained_exon	7022834	7023105	+	asmbl_18014	none	STRG.20355.2	1	STRG.20355.3	1
scaffold_22	alternate_exon	525891	525947	+	asmbl_29158	none	blat.proc3829883.chain_1723	1	STRG.24686.1,blat.proc3829883.chain_1722,blat.proc3829883.chain_1724	3
scaffold_2	starts_in_intron	16404337	16404337	+	asmbl_25170	none	STRG.2580.2	1	STRG.2580.1,blat.proc3829871.chain_2790,blat.proc3829871.chain_2791	3
scaffold_21	alt_acceptor	5545637	5545638	+	asmbl_28595	none	STRG.24076.1,blat.proc3829883.chain_1236	2	blat.proc3829883.chain_1234	1
scaffold_3	ends_in_intron	15744885	15744885	-	asmbl_39386	none	Trinity_GG_19103_c1_g1_i1	1	STRG.3850.1,blat.proc3829887.chain_3578,blat.proc3829887.chain_3579,blat.proc3829887.chain_3580,blat.proc3829887.chain_3581	5
scaffold_17	retained_intron	1304202	1304506	-	asmbl_18740,asmbl_18745	none	STRG.19954.2,blat.proc3829897.chain_931	2	STRG.19954.1,blat.proc3829897.chain_927,blat.proc3829897.chain_928,blat.proc3829897.chain_929,blat.proc3829897.chain_930,blat.proc3829897.chain_932	6
scaffold_12	alt_donor	4984474	4984475	+	asmbl_8593	none	blat.proc3829877.chain_3085	1	STRG.14656.1,STRG.14656.2,blat.proc3829877.chain_3080,blat.proc3829877.chain_3082,blat.proc3829877.chain_3086	5
scaffold_27	alt_donor	2997750	2997751	+	asmbl_36119,asmbl_36121	none	STRG.28767.5,blat.proc3829885.chain_1839	2	blat.proc3829885.chain_1841	1
scaffold_19	retained_intron	3683526	3683854	+	asmbl_22131,asmbl_22138	none	STRG.22046.8,blat.proc3829881.chain_3002,blat.proc3829881.chain_3004	3	STRG.22046.2,STRG.22046.6,STRG.22046.7	3
scaffold_5	starts_in_intron	1565301	1565301	+	asmbl_43797	none	Trinity_GG_3110_c1_g1_i1,blat.proc3829873.chain_1874	2	STRG.5707.1	1
scaffold_17	alt_acceptor	20552	20553	+	asmbl_17662	none	STRG.19879.2	1	STRG.19879.1,blat.proc3829881.chain_733	2
scaffold_24	retained_intron	10604358	10604689	+	asmbl_32582	none	STRG.27008.2,blat.proc3829885.chain_139	2	STRG.27008.1,blat.proc3829885.chain_140,blat.proc3829885.chain_141,blat.proc3829885.chain_142	4
scaffold_14	alternate_exon	209431	210056	-	asmbl_12784	none	STRG.16702.6	1	STRG.16702.3,Trinity_GG_26362_c0_g1_i5,blat.proc3829895.chain_1405	3
scaffold_4	spliced_intron	5230743	5231130	-	asmbl_41310,asmbl_41314	none	STRG.4417.2,STRG.4417.5,blat.proc3829889.chain_437	3	STRG.4417.4,Trinity_GG_19430_c0_g1_i1,blat.proc3829889.chain_438,blat.proc3829889.chain_440	4
scaffold_6	alt_donor	3320928	3320929	-	asmbl_48191,asmbl_48193	none	STRG.7329.2,STRG.7329.3,blat.proc3829889.chain_3341,blat.proc3829889.chain_3342	4	STRG.7329.1,STRG.7329.4,blat.proc3829889.chain_3343	3
scaffold_8	retained_exon	11101710	11101823	-	asmbl_53129,asmbl_53131	none	STRG.10313.1,STRG.10313.3,blat.proc3829891.chain_2471	3	STRG.10313.2,blat.proc3829891.chain_2472	2
scaffold_7	alt_acceptor	2589302	2589303	+	asmbl_50537	none	STRG.8685.2	1	blat.proc3829875.chain_1113	1
scaffold_4	retained_intron	4051130	4051203	+	asmbl_42537	none	Trinity_GG_2360_c0_g1_i2,blat.proc3829873.chain_594	2	STRG.4307.1,Trinity_GG_2360_c0_g1_i1,blat.proc3829873.chain_593	3
scaffold_87	alt_acceptor	9607	9608	+	asmbl_53702,asmbl_53703,asmbl_53704	none	STRG.30139.3,STRG.30139.5,STRG.30139.6,Trinity_GG_18556_c0_g1_i1	4	blat.proc3829901.chain_3215	1
scaffold_2	spliced_intron	7827117	7827319	-	asmbl_23306,asmbl_23307	none	STRG.2079.1,Trinity_GG_18172_c0_g1_i2,blat.proc3829887.chain_1978	3	STRG.2079.3,Trinity_GG_18172_c0_g1_i1,blat.proc3829887.chain_1976	3
scaffold_26	retained_intron	4135749	4135855	-	asmbl_34807	none	blat.proc3829901.chain_1325	1	STRG.28100.1,STRG.28100.2,STRG.28100.3,STRG.28100.4,blat.proc3829901.chain_1324,blat.proc3829901.chain_1326	6
scaffold_1	alt_donor	20135380	20135381	-	asmbl_1170,asmbl_1172	none	STRG.1381.1,STRG.1381.2	2	STRG.1381.3,STRG.1381.4,STRG.1381.5	3
scaffold_18	ends_in_intron	13806713	13806713	+	asmbl_21054,asmbl_21056,asmbl_21059,asmbl_21060	none	STRG.21804.1,Trinity_GG_12056_c0_g1_i2,Trinity_GG_12056_c0_g1_i3,blat.proc3829881.chain_2755,blat.proc3829881.chain_2756,blat.proc3829881.chain_2757,blat.proc3829881.chain_2758	7	STRG.21804.2,Trinity_GG_12056_c1_g1_i4,blat.proc3829881.chain_2761	3
scaffold_19	ends_in_intron	4829081	4829081	-	asmbl_21346	none	blat.proc3829897.chain_2807	1	STRG.22052.1,blat.proc3829897.chain_2808	2
scaffold_23	spliced_intron	4449320	4449423	-	asmbl_31586,asmbl_31587,asmbl_31588,asmbl_31591	none	STRG.25842.1,STRG.25842.2,STRG.25842.3,STRG.25842.4,Trinity_GG_31473_c0_g1_i1,Trinity_GG_31473_c0_g1_i2,Trinity_GG_31473_c0_g1_i4,Trinity_GG_31473_c0_g1_i6,blat.proc3829899.chain_2968,blat.proc3829899.chain_2969,blat.proc3829899.chain_2970,blat.proc3829899.chain_2971	12	Trinity_GG_31473_c0_g1_i3,blat.proc3829899.chain_2972	2
scaffold_18	alt_acceptor	5905585	5905586	-	asmbl_19915	none	blat.proc3829897.chain_2157	1	STRG.21327.1	1
scaffold_8	alt_acceptor	7514970	7514971	-	asmbl_52909	none	STRG.10073.1,blat.proc3829891.chain_2188	2	STRG.10073.2	1
scaffold_3	alternate_exon	799227	802365	-	asmbl_38634	none	STRG.2910.1,blat.proc3829887.chain_2740	2	STRG.2910.3	1
scaffold_26	alt_acceptor	3790169	3790170	+	asmbl_35365	none	STRG.28051.1	1	STRG.28051.2,STRG.28051.4	2
scaffold_17	starts_in_intron	8828862	8828862	-	asmbl_19169	none	blat.proc3829897.chain_1368	1	STRG.20484.1,blat.proc3829897.chain_1369	2
scaffold_6	alt_donor	8172707	8172708	-	asmbl_48475	none	STRG.7691.1,blat.proc3829889.chain_3719	2	STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3715,blat.proc3829889.chain_3716,blat.proc3829889.chain_3724	5
scaffold_8	starts_in_intron	3621277	3621277	+	asmbl_51777	none	Trinity_GG_5445_c0_g1_i1,blat.proc3829875.chain_2280	2	STRG.9854.1,STRG.9854.2,STRG.9854.3,STRG.9854.4,blat.proc3829875.chain_2278,blat.proc3829875.chain_2279	6
scaffold_13	alt_acceptor	8954859	8954860	+	asmbl_11147,asmbl_11148	none	STRG.16151.3,blat.proc3829879.chain_863,blat.proc3829879.chain_864	3	STRG.16151.1,STRG.16151.2,blat.proc3829879.chain_862,blat.proc3829879.chain_865	4
scaffold_8	alt_acceptor	9374179	9374180	-	asmbl_53020,asmbl_53021,asmbl_53023,asmbl_53026,asmbl_53027	none	STRG.10194.3,STRG.10194.4,STRG.10194.6,blat.proc3829891.chain_2355,blat.proc3829891.chain_2356,blat.proc3829891.chain_2358	6	STRG.10194.5	1
scaffold_5	spliced_intron	9711452	9711983	+	asmbl_44298	none	STRG.6273.1,blat.proc3829873.chain_2437	2	blat.proc3829873.chain_2438	1
scaffold_1	starts_in_intron	7374812	7374812	-	asmbl_440	none	STRG.517.5,blat.proc3829887.chain_407	2	STRG.517.2,STRG.517.3,blat.proc3829887.chain_405	3
scaffold_16	retained_exon	7217977	7217997	-	asmbl_16344,asmbl_16347,asmbl_16353,asmbl_16356	none	STRG.19382.1,STRG.19382.2,STRG.19382.3,STRG.19382.5	4	STRG.19382.4,STRG.19382.6	2
scaffold_9	ends_in_intron	12635094	12635094	+	asmbl_54432,asmbl_54433	none	blat.proc3829877.chain_353,blat.proc3829877.chain_357	2	STRG.11574.1,STRG.11574.3,Trinity_GG_6469_c0_g1_i6,blat.proc3829877.chain_355	4
scaffold_1	retained_intron	11173731	11174136	+	asmbl_2064,asmbl_2069,asmbl_2076,asmbl_2077	none	STRG.743.1,STRG.743.4,blat.proc3829871.chain_818,blat.proc3829871.chain_820,blat.proc3829871.chain_821,blat.proc3829871.chain_825	6	STRG.743.3,STRG.743.5,blat.proc3829871.chain_815,blat.proc3829871.chain_824	4
scaffold_23	retained_intron	6290063	6290359	-	asmbl_31688,asmbl_31689,asmbl_31690,asmbl_31691,asmbl_31694	none	STRG.25954.2,Trinity_GG_31552_c0_g1_i3,Trinity_GG_31552_c0_g1_i4,Trinity_GG_31552_c0_g1_i6,Trinity_GG_31552_c0_g1_i7,blat.proc3829899.chain_3102,blat.proc3829899.chain_3103,blat.proc3829899.chain_3105,blat.proc3829899.chain_3106	9	STRG.25954.1,Trinity_GG_31552_c0_g1_i2,Trinity_GG_31552_c0_g1_i5,blat.proc3829899.chain_3101,blat.proc3829899.chain_3104,blat.proc3829899.chain_3107	6
scaffold_27	ends_in_intron	2902169	2902169	-	asmbl_36823	none	STRG.28755.3,blat.proc3829901.chain_1933	2	STRG.28755.1,STRG.28755.2,Trinity_GG_33104_c0_g1_i2,blat.proc3829901.chain_1932	4
scaffold_28	ends_in_intron	3068675	3068675	+	asmbl_38126	none	blat.proc3829885.chain_2600,blat.proc3829885.chain_2601	2	STRG.29493.1,blat.proc3829885.chain_2597,blat.proc3829885.chain_2598	3
scaffold_26	ends_in_intron	9917695	9917695	-	asmbl_35072,asmbl_35073,asmbl_35074	none	STRG.28506.2,STRG.28506.3,blat.proc3829901.chain_1611	3	STRG.28506.1,Trinity_GG_32924_c0_g1_i4,blat.proc3829901.chain_1613	3
scaffold_2	starts_in_intron	14267292	14267292	-	asmbl_23606	none	blat.proc3829887.chain_2309	1	STRG.2420.1,blat.proc3829887.chain_2310	2
scaffold_5	retained_exon	18262627	18262698	+	asmbl_44892	none	STRG.6959.2,blat.proc3829873.chain_3103	2	STRG.6959.1,blat.proc3829873.chain_3105,blat.proc3829873.chain_3109	3
scaffold_1555	alternate_exon	996	1456	-	asmbl_15982	none	STRG.30598.4	1	STRG.30598.2	1
scaffold_19	retained_intron	11475869	11475988	-	asmbl_21607,asmbl_21609	none	STRG.22467.1,STRG.22467.2	2	STRG.22467.3	1
scaffold_8	alt_donor	18089675	18089676	+	asmbl_52518	none	STRG.10702.1,blat.proc3829875.chain_3180	2	blat.proc3829875.chain_3182	1
scaffold_28	starts_in_intron	2905500	2905500	+	asmbl_38114	none	Trinity_GG_16323_c0_g1_i2,blat.proc3829885.chain_2541	2	STRG.29463.1,blat.proc3829885.chain_2542	2
scaffold_9	retained_intron	11777566	11777728	+	asmbl_54360	none	Trinity_GG_6374_c0_g1_i1,blat.proc3829877.chain_212	2	STRG.11478.1	1
scaffold_15	alt_donor	14634501	14634502	-	asmbl_15749,asmbl_15750,asmbl_15751	none	STRG.18867.1,STRG.18867.2,STRG.18867.3,blat.proc3829895.chain_3643,blat.proc3829895.chain_3644,blat.proc3829895.chain_3645	6	STRG.18867.4	1
scaffold_12	retained_exon	1056994	1057091	+	asmbl_8419	none	STRG.14436.3	1	STRG.14436.2	1
scaffold_18	starts_in_intron	2823322	2823322	+	asmbl_20451	none	STRG.21133.3,blat.proc3829881.chain_1922	2	STRG.21133.1,STRG.21133.2,blat.proc3829881.chain_1915,blat.proc3829881.chain_1916,blat.proc3829881.chain_1920	5
scaffold_26	starts_in_intron	9947646	9947646	-	asmbl_35076	none	STRG.28510.1	1	STRG.28510.2,STRG.28510.3	2
scaffold_2	retained_intron	15270410	15270515	+	asmbl_25041	none	blat.proc3829871.chain_2529	1	STRG.2481.1,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2536,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	9
scaffold_9	retained_exon	16564428	16565837	-	asmbl_55544,asmbl_55545,asmbl_55546	none	STRG.11797.3,STRG.11797.4,STRG.11797.6,Trinity_GG_23481_c0_g3_i1,Trinity_GG_23481_c0_g3_i6,blat.proc3829893.chain_86,blat.proc3829893.chain_88	7	STRG.11797.1,STRG.11797.2,STRG.11797.5,Trinity_GG_23481_c0_g3_i5,blat.proc3829893.chain_83,blat.proc3829893.chain_84,blat.proc3829893.chain_85	7
scaffold_6	alternate_exon	12379728	12389703	+	asmbl_47330	none	STRG.7989.1,blat.proc3829875.chain_401	2	STRG.7989.2,Trinity_GG_4387_c0_g1_i2,blat.proc3829875.chain_400	3
scaffold_2	ends_in_intron	11597250	11597250	+	asmbl_24797	none	blat.proc3829871.chain_2304	1	STRG.2273.1,STRG.2273.2,STRG.2273.3,blat.proc3829871.chain_2298,blat.proc3829871.chain_2300,blat.proc3829871.chain_2301,blat.proc3829871.chain_2303	7
scaffold_8	alt_donor	18248547	18248548	-	asmbl_53541,asmbl_53542	none	STRG.10723.1,STRG.10723.2	2	STRG.10723.3,STRG.10723.5,blat.proc3829891.chain_2919,blat.proc3829891.chain_2921,blat.proc3829891.chain_2925	5
scaffold_11	ends_in_intron	13576130	13576130	-	asmbl_7120,asmbl_7122	none	STRG.14204.2,blat.proc3829893.chain_2654	2	STRG.14204.1,blat.proc3829893.chain_2652,blat.proc3829893.chain_2653	3
scaffold_8	spliced_intron	4859932	4860106	-	asmbl_52803	none	STRG.9940.1,blat.proc3829891.chain_2117	2	blat.proc3829891.chain_2118	1
scaffold_20	retained_exon	11481215	11481277	+	asmbl_26207,asmbl_26209	none	STRG.23639.1,Trinity_GG_13053_c0_g1_i2,Trinity_GG_13053_c0_g1_i4,blat.proc3829883.chain_714,blat.proc3829883.chain_717	5	STRG.23639.2,STRG.23639.4,Trinity_GG_13053_c0_g1_i3,blat.proc3829883.chain_716	4
scaffold_7	retained_intron	16829914	16830413	-	asmbl_50240	none	Trinity_GG_22380_c0_g1_i2,blat.proc3829891.chain_1791	2	STRG.9583.1,Trinity_GG_22380_c0_g1_i1,blat.proc3829891.chain_1790	3
scaffold_2382	alt_donor	598	599	-	asmbl_32004	none	STRG.30721.1,blat.proc3829901.chain_3666	2	blat.proc3829885.chain_912	1
scaffold_7	alt_acceptor	4915840	4915841	+	asmbl_50645	none	STRG.8828.4	1	STRG.8828.2,STRG.8828.3	2
scaffold_5	spliced_intron	8748542	8748659	+	asmbl_44226,asmbl_44228	none	STRG.6200.1,STRG.6200.2,Trinity_GG_3381_c0_g1_i5,blat.proc3829873.chain_2338,blat.proc3829873.chain_2339	5	Trinity_GG_3381_c0_g1_i3,blat.proc3829873.chain_2340,blat.proc3829873.chain_2341,blat.proc3829873.chain_2342	4
scaffold_7	retained_intron	6042675	6042946	-	asmbl_49722	none	STRG.8899.1,Trinity_GG_22045_c0_g1_i2	2	STRG.8899.5	1
scaffold_15	alt_donor	9286723	9286724	+	asmbl_14327,asmbl_14328,asmbl_14330	none	STRG.18450.1,blat.proc3829879.chain_3090,blat.proc3829879.chain_3091	3	STRG.18450.2	1
scaffold_8	starts_in_intron	16219132	16219132	+	asmbl_52425	none	STRG.10600.1	1	Trinity_GG_5889_c0_g1_i1,blat.proc3829875.chain_3096	2
scaffold_18	skipped_exon	824174	824807	+	asmbl_20352	none	STRG.20996.1,blat.proc3829881.chain_1781	2	blat.proc3829881.chain_1782	1
scaffold_14	alt_acceptor	1069874	1069875	+	asmbl_11767,asmbl_11768,asmbl_11770,asmbl_11773	none	STRG.16754.1,STRG.16754.2,blat.proc3829879.chain_1440,blat.proc3829879.chain_1442	4	STRG.16754.3,STRG.16754.4,STRG.16754.5,blat.proc3829879.chain_1436,blat.proc3829879.chain_1441	5
scaffold_6	ends_in_intron	4294819	4294819	-	asmbl_48253	none	blat.proc3829889.chain_3440	1	blat.proc3829889.chain_3439	1
scaffold_5	alternate_exon	6912896	6916733	+	asmbl_44120	none	STRG.6096.2,blat.proc3829873.chain_2232,blat.proc3829873.chain_2237	3	STRG.6096.1,Trinity_GG_3318_c0_g1_i4,blat.proc3829873.chain_2233	3
scaffold_8	spliced_intron	3796351	3797087	+	asmbl_51792	none	STRG.9863.2	1	STRG.9863.1,Trinity_GG_5500_c0_g1_i1,Trinity_GG_5500_c0_g2_i1,blat.proc3829875.chain_2372,blat.proc3829875.chain_2373	5
scaffold_28	spliced_intron	2808976	2809341	-	asmbl_37408,asmbl_37410,asmbl_37413	none	STRG.29459.1,blat.proc3829901.chain_2491,blat.proc3829901.chain_2493,blat.proc3829901.chain_2496	4	blat.proc3829901.chain_2492,blat.proc3829901.chain_2494,blat.proc3829901.chain_2495,blat.proc3829901.chain_2497	4
scaffold_27	starts_in_intron	3967217	3967217	+	asmbl_36202	none	STRG.28840.2,blat.proc3829885.chain_1915	2	STRG.28840.1,blat.proc3829885.chain_1916	2
scaffold_11	alt_acceptor	11936610	11936611	-	asmbl_7020,asmbl_7023	none	STRG.14160.1,STRG.14160.3	2	STRG.14160.2,STRG.14160.4,STRG.14160.5	3
scaffold_25	alt_donor	6073526	6073527	-	asmbl_34288,asmbl_34296	none	STRG.27475.2,blat.proc3829901.chain_724	2	STRG.27475.1,blat.proc3829901.chain_725,blat.proc3829901.chain_726	3
scaffold_16	skipped_exon	432537	433108	-	asmbl_16054	none	blat.proc3829897.chain_27	1	STRG.19039.1,blat.proc3829897.chain_17,blat.proc3829897.chain_18,blat.proc3829897.chain_19,blat.proc3829897.chain_20,blat.proc3829897.chain_21,blat.proc3829897.chain_23,blat.proc3829897.chain_24,blat.proc3829897.chain_25,blat.proc3829897.chain_26	10
scaffold_7	ends_in_intron	1229731	1229731	+	asmbl_50475	none	blat.proc3829875.chain_1051	1	STRG.8627.2,STRG.8627.3,STRG.8627.4,STRG.8627.5,STRG.8627.6,Trinity_GG_4740_c0_g1_i15,Trinity_GG_4740_c0_g1_i16,Trinity_GG_4740_c0_g1_i17,Trinity_GG_4740_c0_g1_i21,blat.proc3829875.chain_1042,blat.proc3829875.chain_1046,blat.proc3829875.chain_1047,blat.proc3829875.chain_1052	13
scaffold_19	ends_in_intron	13380072	13380072	-	asmbl_21869	none	Trinity_GG_29591_c0_g1_i1,blat.proc3829897.chain_3346	2	STRG.22653.1,blat.proc3829897.chain_3345	2
scaffold_11	starts_in_intron	13301374	13301374	+	asmbl_6028	none	blat.proc3829877.chain_2681	1	STRG.14188.1,blat.proc3829877.chain_2682	2
scaffold_15	ends_in_intron	4566433	4566433	+	asmbl_14102	none	Trinity_GG_9942_c0_g1_i2,blat.proc3829879.chain_2741	2	STRG.18173.1,STRG.18173.2,STRG.18173.3,Trinity_GG_9942_c0_g1_i1,Trinity_GG_9942_c0_g1_i3,Trinity_GG_9942_c0_g1_i4,Trinity_GG_9942_c0_g1_i5,blat.proc3829879.chain_2742,blat.proc3829879.chain_2743,blat.proc3829879.chain_2744,blat.proc3829879.chain_2745	11
scaffold_9	retained_intron	11815672	11815756	+	asmbl_54368	none	Trinity_GG_6411_c0_g2_i2,blat.proc3829877.chain_264	2	STRG.11485.1,Trinity_GG_6411_c0_g2_i1,blat.proc3829877.chain_265	3
scaffold_6	spliced_intron	797115	797273	-	asmbl_48011,asmbl_48014	none	STRG.7133.1,STRG.7133.2,blat.proc3829889.chain_3126	3	STRG.7133.3	1
scaffold_26	spliced_intron	10097149	10097600	-	asmbl_35079	none	STRG.28512.1,blat.proc3829901.chain_1638	2	Trinity_GG_32937_c0_g1_i3,blat.proc3829901.chain_1637,blat.proc3829901.chain_1639	3
scaffold_5	skipped_exon	13806575	13808028	-	asmbl_45943,asmbl_45944	none	STRG.6592.2,blat.proc3829889.chain_2655	2	STRG.6592.1,blat.proc3829889.chain_2652,blat.proc3829889.chain_2653	3
scaffold_13	retained_intron	2636936	2637161	+	asmbl_10616	none	STRG.15549.2,Trinity_GG_8560_c0_g1_i4	2	STRG.15549.1,Trinity_GG_8560_c0_g1_i1,Trinity_GG_8560_c0_g1_i3,blat.proc3829879.chain_272	4
scaffold_19	alt_acceptor	13007841	13007842	+	asmbl_22644,asmbl_22647,asmbl_22648,asmbl_22650	none	STRG.22609.1,Trinity_GG_12510_c0_g1_i4,Trinity_GG_12510_c0_g1_i5,Trinity_GG_12510_c0_g1_i6,Trinity_GG_12510_c0_g1_i8,blat.proc3829881.chain_3576,blat.proc3829881.chain_3577,blat.proc3829881.chain_3579,blat.proc3829881.chain_3584	9	STRG.22609.2,Trinity_GG_12510_c0_g1_i1,Trinity_GG_12510_c0_g1_i10,Trinity_GG_12510_c0_g1_i11,blat.proc3829881.chain_3578,blat.proc3829881.chain_3583,blat.proc3829881.chain_3585	7
scaffold_3	retained_intron	14763888	14764213	-	asmbl_39362,asmbl_39366	none	STRG.3818.4,Trinity_GG_19114_c0_g1_i2,Trinity_GG_19114_c0_g1_i3,blat.proc3829887.chain_3599,blat.proc3829887.chain_3601	5	STRG.3818.2,STRG.3818.3,Trinity_GG_19114_c0_g1_i1,blat.proc3829887.chain_3600	4
scaffold_9	starts_in_intron	16687858	16687858	-	asmbl_55576	none	Trinity_GG_23549_c0_g1_i1,blat.proc3829893.chain_200	2	STRG.11810.1,blat.proc3829893.chain_201,blat.proc3829893.chain_202	3
scaffold_12	spliced_intron	16402135	16403321	+	asmbl_9133,asmbl_9137	none	STRG.15385.4,blat.proc3829877.chain_3732	2	STRG.15385.1,STRG.15385.2,STRG.15385.3,STRG.15385.6,Trinity_GG_8419_c0_g1_i1,Trinity_GG_8419_c0_g1_i3,Trinity_GG_8419_c0_g1_i5,blat.proc3829877.chain_3733,blat.proc3829877.chain_3734,blat.proc3829877.chain_3737	10
scaffold_22	skipped_exon	9157646	9159906	-	asmbl_30283,asmbl_30284	none	STRG.25232.1,blat.proc3829899.chain_2273	2	STRG.25232.2,Trinity_GG_31086_c0_g1_i2,blat.proc3829899.chain_2274	3
scaffold_16	alt_acceptor	4137446	4137447	-	asmbl_16227	none	STRG.19217.2	1	blat.proc3829897.chain_298,blat.proc3829897.chain_299	2
scaffold_10	retained_intron	2668937	2669198	+	asmbl_4267	none	blat.proc3829877.chain_805	1	STRG.12074.1,blat.proc3829877.chain_804	2
scaffold_18	spliced_intron	206330	206526	+	asmbl_20300,asmbl_20302,asmbl_20303,asmbl_20304,asmbl_20305	none	STRG.20965.1,Trinity_GG_11543_c0_g1_i4,blat.proc3829881.chain_1839,blat.proc3829881.chain_1840,blat.proc3829881.chain_1841,blat.proc3829881.chain_1842,blat.proc3829881.chain_1843	7	Trinity_GG_11543_c0_g1_i1,blat.proc3829881.chain_1838	2
scaffold_13	retained_exon	2353532	2353588	+	asmbl_10580,asmbl_10583	none	blat.proc3829879.chain_152,blat.proc3829879.chain_157	2	STRG.15543.3,STRG.15543.6,STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161,blat.proc3829879.chain_162	10
scaffold_1	alt_donor	14201846	14201847	+	asmbl_2329	none	blat.proc3829871.chain_1049	1	STRG.1004.1,Trinity_GG_586_c0_g1_i1,blat.proc3829871.chain_1048	3
scaffold_1	alt_donor	10414949	10414950	-	asmbl_596	none	STRG.680.3	1	STRG.680.1,STRG.680.4,blat.proc3829887.chain_609	3
scaffold_5	spliced_intron	12958540	12958648	-	asmbl_45882	none	STRG.6512.2	1	STRG.6512.1	1
scaffold_7	alt_acceptor	1229882	1229883	+	asmbl_50468,asmbl_50470,asmbl_50474,asmbl_50478,asmbl_50480,asmbl_50484	none	STRG.8627.2,STRG.8627.3,STRG.8627.5,STRG.8627.6,Trinity_GG_4740_c0_g1_i15,Trinity_GG_4740_c0_g1_i16,Trinity_GG_4740_c0_g1_i21,blat.proc3829875.chain_1042,blat.proc3829875.chain_1046,blat.proc3829875.chain_1052	10	STRG.8627.4,Trinity_GG_4740_c0_g1_i17,blat.proc3829875.chain_1047	3
scaffold_13	spliced_intron	8112220	8112754	+	asmbl_11089	none	STRG.16075.1,Trinity_GG_8843_c0_g2_i1	2	STRG.16075.2,Trinity_GG_8843_c0_g1_i1,blat.proc3829879.chain_820	3
scaffold_10	spliced_intron	12069498	12070132	+	asmbl_4800	none	STRG.12834.2,blat.proc3829877.chain_1398	2	STRG.12834.1,blat.proc3829877.chain_1399	2
scaffold_19	alt_donor	856362	856363	+	asmbl_22019,asmbl_22020,asmbl_22021	none	STRG.21868.2,Trinity_GG_12075_c1_g1_i1,blat.proc3829881.chain_2793,blat.proc3829881.chain_2794,blat.proc3829881.chain_2795	5	STRG.21868.1	1
scaffold_7	skipped_exon	1229953	1231347	+	asmbl_50474,asmbl_50483,asmbl_50484	none	Trinity_GG_4740_c0_g1_i16,Trinity_GG_4740_c0_g1_i17,Trinity_GG_4740_c0_g1_i21,blat.proc3829875.chain_1042,blat.proc3829875.chain_1046,blat.proc3829875.chain_1047	6	STRG.8627.2,STRG.8627.3,STRG.8627.5,STRG.8627.6,Trinity_GG_4740_c0_g1_i15,blat.proc3829875.chain_1052	6
scaffold_13	ends_in_intron	11599690	11599690	+	asmbl_11271	none	blat.proc3829879.chain_1024	1	STRG.16295.1,STRG.16295.3,blat.proc3829879.chain_1014,blat.proc3829879.chain_1018,blat.proc3829879.chain_1019	5
scaffold_4	starts_in_intron	10856653	10856653	+	asmbl_43011	none	Trinity_GG_2677_c0_g2_i1	1	STRG.4806.2	1
scaffold_15	starts_in_intron	16264428	16264428	-	asmbl_15834	none	Trinity_GG_27642_c0_g1_i3,blat.proc3829895.chain_3700	2	STRG.18969.1,Trinity_GG_27642_c0_g1_i2,blat.proc3829895.chain_3701	3
scaffold_16	spliced_intron	10696898	10697449	+	asmbl_17353	none	STRG.19612.1,blat.proc3829881.chain_491,blat.proc3829897.chain_551	3	Trinity_GG_10749_c0_g1_i2,Trinity_GG_10749_c0_g1_i6,blat.proc3829881.chain_492,blat.proc3829881.chain_493	4
scaffold_7	spliced_intron	4915842	4915925	+	asmbl_50644	none	STRG.8828.2	1	STRG.8828.1,STRG.8828.3,blat.proc3829875.chain_1206	3
scaffold_19	retained_exon	2780749	2780818	+	asmbl_22077,asmbl_22080	none	STRG.21950.1,blat.proc3829881.chain_2913	2	STRG.21950.2	1
scaffold_26	alt_donor	4689204	4689205	-	asmbl_34859,asmbl_34862	none	STRG.28179.1,blat.proc3829901.chain_1383,blat.proc3829901.chain_1385	3	STRG.28179.2,STRG.28179.3,blat.proc3829901.chain_1382	3
scaffold_2	ends_in_intron	8301604	8301604	+	asmbl_24662,asmbl_24664	none	STRG.2116.2,blat.proc3829871.chain_2248,blat.proc3829871.chain_2250	3	STRG.2116.1,STRG.2116.3,STRG.2116.4,blat.proc3829871.chain_2249	4
scaffold_7	spliced_intron	6654846	6655304	-	asmbl_49744	none	STRG.8934.1,blat.proc3829891.chain_1261	2	STRG.8934.2,Trinity_GG_22098_c0_g1_i3,blat.proc3829891.chain_1262	3
scaffold_1	alt_acceptor	14321242	14321243	+	asmbl_2358	none	STRG.1024.1,blat.proc3829871.chain_1129	2	STRG.1024.2,blat.proc3829871.chain_1128	2
scaffold_12	spliced_intron	9505734	9505871	+	asmbl_8827	none	STRG.14922.1,Trinity_GG_8259_c0_g1_i3,blat.proc3829877.chain_3450	3	STRG.14922.2,Trinity_GG_8259_c0_g1_i1,Trinity_GG_8259_c0_g1_i2,blat.proc3829877.chain_3449,blat.proc3829877.chain_3451	5
scaffold_1	retained_intron	14355864	14355968	-	asmbl_907	none	blat.proc3829887.chain_908	1	blat.proc3829887.chain_906	1
scaffold_15	alt_donor	12742135	12742136	+	asmbl_14540,asmbl_14541,asmbl_14543	none	STRG.18731.1,STRG.18731.2,blat.proc3829879.chain_3350,blat.proc3829879.chain_3352,blat.proc3829879.chain_3353	5	STRG.18731.3,STRG.18731.4,blat.proc3829879.chain_3351	3
scaffold_26	retained_exon	1994577	1994934	+	asmbl_35259	none	STRG.27926.2	1	blat.proc3829885.chain_907	1
scaffold_5	alt_donor	4696426	4696427	+	asmbl_43952,asmbl_43954	none	STRG.5917.2,STRG.5917.4	2	STRG.5917.3,blat.proc3829873.chain_2093,blat.proc3829873.chain_2094	3
scaffold_6	ends_in_intron	16063228	16063228	-	asmbl_49038	none	blat.proc3829891.chain_650	1	STRG.8333.1,blat.proc3829891.chain_652	2
scaffold_5	ends_in_intron	17327595	17327595	+	asmbl_44826,asmbl_44828	none	blat.proc3829873.chain_3020,blat.proc3829873.chain_3024	2	Trinity_GG_3785_c0_g1_i2,Trinity_GG_3785_c0_g1_i4,blat.proc3829873.chain_3019,blat.proc3829873.chain_3022	4
scaffold_4	retained_intron	19524379	19524448	-	asmbl_42199	none	blat.proc3829889.chain_1551	1	STRG.5535.1,blat.proc3829889.chain_1550,blat.proc3829889.chain_1553	3
scaffold_26	skipped_exon	9834285	9834650	-	asmbl_35065	none	STRG.28503.3	1	STRG.28503.1,STRG.28503.2,blat.proc3829901.chain_1556,blat.proc3829901.chain_1557	4
scaffold_18	retained_intron	1886374	1887983	-	asmbl_19688,asmbl_19691,asmbl_19692,asmbl_19693	none	STRG.21072.5,Trinity_GG_28789_c1_g1_i1,blat.proc3829897.chain_1905	3	STRG.21072.2,STRG.21072.3,STRG.21072.4,STRG.21072.6,blat.proc3829897.chain_1893	5
scaffold_20	spliced_intron	1469067	1469176	-	asmbl_26503,asmbl_26504,asmbl_26505	none	STRG.22854.1,STRG.22854.2,STRG.22854.3,blat.proc3829897.chain_3663,blat.proc3829897.chain_3665	5	blat.proc3829897.chain_3664	1
scaffold_22	alt_acceptor	10003024	10003025	+	asmbl_29624	none	STRG.25328.1	1	STRG.25328.2	1
scaffold_527	ends_in_intron	3208	3208	+	asmbl_46491	none	blat.proc3829885.chain_3379	1	STRG.30337.1,Trinity_GG_16797_c0_g1_i2,blat.proc3829885.chain_3378	3
scaffold_20	ends_in_intron	3469203	3469203	-	asmbl_26620	none	Trinity_GG_29871_c0_g1_i2,blat.proc3829899.chain_73	2	STRG.23046.1,blat.proc3829899.chain_72	2
scaffold_9	retained_intron	3912783	3912902	-	asmbl_54913	none	Trinity_GG_23099_c0_g1_i2,blat.proc3829891.chain_3140	2	STRG.10999.1,STRG.10999.2,Trinity_GG_23099_c0_g1_i1,blat.proc3829891.chain_3141	4
scaffold_23	starts_in_intron	10204624	10204624	-	asmbl_31846	none	STRG.26215.1	1	STRG.26215.2	1
scaffold_11	retained_exon	8478214	8478294	+	asmbl_5745	none	STRG.13851.2,Trinity_GG_7647_c0_g1_i2,blat.proc3829877.chain_2360	3	STRG.13851.1,Trinity_GG_7647_c0_g1_i5,blat.proc3829877.chain_2362	3
scaffold_2	retained_intron	14278868	14278991	+	asmbl_24932,asmbl_24935	none	blat.proc3829871.chain_2541,blat.proc3829871.chain_2545	2	blat.proc3829871.chain_2543	1
scaffold_10	alternate_exon	16252754	16253034	+	asmbl_4982,asmbl_4984	none	STRG.13097.2,STRG.13097.3,blat.proc3829877.chain_1598	3	STRG.13097.1,Trinity_GG_7185_c0_g1_i2,blat.proc3829877.chain_1597	3
scaffold_21	spliced_intron	10120864	10120890	+	asmbl_28874	none	STRG.24463.1	1	Trinity_GG_13526_c1_g1_i1,Trinity_GG_13526_c1_g1_i2,blat.proc3829883.chain_1543	3
scaffold_2	alternate_exon	15873953	15874141	-	asmbl_23675	none	blat.proc3829887.chain_2388	1	blat.proc3829887.chain_2390	1
scaffold_6	alt_donor	7285978	7285979	-	asmbl_48427	none	STRG.7626.2	1	STRG.7626.1,blat.proc3829889.chain_3658	2
scaffold_6	alt_donor	19076979	19076980	+	asmbl_47813,asmbl_47815	none	STRG.8572.1,STRG.8572.4,Trinity_GG_4663_c0_g1_i2,Trinity_GG_4663_c0_g1_i5,blat.proc3829875.chain_865,blat.proc3829875.chain_867	6	STRG.8572.2,STRG.8572.3,Trinity_GG_4663_c0_g1_i3,blat.proc3829875.chain_866	4
scaffold_26	spliced_intron	6351209	6351295	-	asmbl_34952,asmbl_34953,asmbl_34954	none	STRG.28315.2,STRG.28315.3,STRG.28315.5,blat.proc3829901.chain_1403,blat.proc3829901.chain_1404,blat.proc3829901.chain_1406	6	STRG.28315.1	1
scaffold_26	retained_intron	3361453	3361585	+	asmbl_35306	none	blat.proc3829885.chain_899	1	STRG.28006.2,blat.proc3829885.chain_898	2
scaffold_2	alt_donor	13077787	13077788	-	asmbl_23503,asmbl_23505,asmbl_23510	none	STRG.2340.1,blat.proc3829887.chain_2255,blat.proc3829887.chain_2256,blat.proc3829887.chain_2262	4	STRG.2340.2,STRG.2340.3,blat.proc3829887.chain_2257,blat.proc3829887.chain_2258,blat.proc3829887.chain_2259,blat.proc3829887.chain_2260	6
scaffold_21	alternate_exon	10505501	10506791	-	asmbl_28077,asmbl_28079	none	STRG.24508.2,STRG.24508.3,blat.proc3829899.chain_1655	3	STRG.24508.1	1
scaffold_11	alt_donor	9018518	9018519	-	asmbl_6890	none	blat.proc3829893.chain_2277	1	STRG.13926.1,STRG.13926.2,blat.proc3829893.chain_2276,blat.proc3829893.chain_2278,blat.proc3829893.chain_2279	5
scaffold_11	retained_exon	3516397	3516552	+	asmbl_5405	none	blat.proc3829877.chain_1976	1	STRG.13473.1	1
scaffold_54	spliced_intron	7823	8417	-	asmbl_46504	none	STRG.30045.1,blat.proc3829901.chain_3152	2	STRG.30045.2,Trinity_GG_33861_c1_g1_i1,blat.proc3829901.chain_3151,blat.proc3829901.chain_3153	4
scaffold_60	ends_in_intron	21662	21662	-	asmbl_49396	none	Trinity_GG_33873_c1_g1_i1,blat.proc3829901.chain_3172	2	blat.proc3829901.chain_3171	1
scaffold_21	ends_in_intron	5275495	5275495	-	asmbl_27662	none	blat.proc3829899.chain_1110	1	STRG.24048.1,blat.proc3829899.chain_1111	2
scaffold_6	alt_donor	12002420	12002421	+	asmbl_47303,asmbl_47306	none	STRG.7963.1,STRG.7963.2	2	STRG.7963.3	1
scaffold_5	alt_acceptor	7400859	7400860	+	asmbl_44159	none	STRG.6128.1,Trinity_GG_3351_c1_g1_i1,blat.proc3829873.chain_2290	3	STRG.6128.2,blat.proc3829873.chain_2291	2
scaffold_6	retained_intron	3056262	3056806	+	asmbl_46749	none	blat.proc3829873.chain_3443	1	STRG.7308.1,STRG.7308.2,blat.proc3829873.chain_3438,blat.proc3829873.chain_3439,blat.proc3829873.chain_3440,blat.proc3829873.chain_3444,blat.proc3829873.chain_3445,blat.proc3829873.chain_3446	8
scaffold_21	spliced_intron	5110609	5110692	-	asmbl_27630	none	STRG.24033.1,blat.proc3829899.chain_1099	2	blat.proc3829899.chain_1100	1
scaffold_16	alt_acceptor	768070	768071	-	asmbl_16076	none	STRG.19043.1	1	STRG.19043.2	1
scaffold_2	spliced_intron	14220662	14220786	-	asmbl_23595,asmbl_23597,asmbl_23599	none	STRG.2413.1,blat.proc3829887.chain_2199,blat.proc3829887.chain_2201,blat.proc3829887.chain_2203	4	blat.proc3829887.chain_2200,blat.proc3829887.chain_2202	2
scaffold_300	alt_acceptor	1587	1588	+	asmbl_40851	none	STRG.30247.2	1	STRG.30247.1,blat.proc3829885.chain_3278	2
scaffold_27	skipped_exon	3091909	3093432	-	asmbl_36841	none	STRG.28775.3,blat.proc3829901.chain_1951	2	STRG.28775.4,STRG.28775.5,blat.proc3829901.chain_1946	3
scaffold_7	alt_acceptor	17803966	17803967	+	asmbl_51380	none	STRG.9615.2	1	STRG.9615.1,blat.proc3829875.chain_2084	2
scaffold_2	ends_in_intron	1617003	1617003	-	asmbl_22888	none	Trinity_GG_17883_c3_g1_i1,blat.proc3829887.chain_1454	2	STRG.1647.2,blat.proc3829887.chain_1449,blat.proc3829887.chain_1450,blat.proc3829887.chain_1451	4
scaffold_24	alternate_exon	2520807	2520890	-	asmbl_32784	none	blat.proc3829899.chain_3520	1	blat.proc3829899.chain_3519	1
scaffold_22	retained_intron	6131276	6131391	+	asmbl_29396	none	blat.proc3829883.chain_2010	1	STRG.24955.3,STRG.24955.7,blat.proc3829883.chain_2007,blat.proc3829883.chain_2009	4
scaffold_16	alternate_exon	9427659	9428013	+	asmbl_17283	none	STRG.19529.2,blat.proc3829881.chain_406	2	STRG.19529.1,Trinity_GG_10695_c0_g1_i1	2
scaffold_10	retained_intron	6064811	6065209	+	asmbl_4500,asmbl_4501,asmbl_4502,asmbl_4503,asmbl_4508,asmbl_4509,asmbl_4510	none	STRG.12431.1,STRG.12431.2,STRG.12431.3,STRG.12431.4,STRG.12431.5,blat.proc3829877.chain_1065,blat.proc3829877.chain_1066,blat.proc3829877.chain_1067,blat.proc3829877.chain_1070,blat.proc3829877.chain_1071,blat.proc3829877.chain_1072,blat.proc3829877.chain_1073	12	blat.proc3829877.chain_1068	1
scaffold_24	starts_in_intron	3792080	3792080	+	asmbl_32177	none	Trinity_GG_14670_c0_g1_i1,blat.proc3829883.chain_3437	2	STRG.26545.1,Trinity_GG_14670_c0_g1_i2,blat.proc3829883.chain_3438	3
scaffold_6	alt_donor	573750	573751	+	asmbl_46618	none	STRG.7105.2,blat.proc3829873.chain_3210	2	Trinity_GG_3890_c0_g1_i3,blat.proc3829873.chain_3208	2
scaffold_22	spliced_intron	4231499	4231806	-	asmbl_29977,asmbl_29990	none	STRG.24838.1,blat.proc3829899.chain_1977	2	blat.proc3829899.chain_1975	1
scaffold_13	alternate_exon	8806348	8807519	-	asmbl_9946	none	blat.proc3829895.chain_944	1	STRG.16137.4,Trinity_GG_26094_c0_g1_i4,blat.proc3829895.chain_939	3
scaffold_5	alt_donor	5064055	5064056	-	asmbl_45415	none	STRG.5956.2,Trinity_GG_20370_c0_g1_i3,blat.proc3829889.chain_2047	3	STRG.5956.1,blat.proc3829889.chain_2049	2
scaffold_3	retained_exon	1426199	1426319	-	asmbl_38662	none	STRG.2958.3,blat.proc3829887.chain_2734	2	STRG.2958.2	1
scaffold_1	alternate_exon	6310693	6310790	+	asmbl_1817	none	STRG.430.2	1	STRG.430.1,blat.proc3829871.chain_480	2
scaffold_18	retained_exon	3637424	3637456	+	asmbl_20494,asmbl_20495	none	STRG.21169.3,blat.proc3829881.chain_2050	2	STRG.21169.1,STRG.21169.2,blat.proc3829881.chain_2051,blat.proc3829881.chain_2052	4
scaffold_4	starts_in_intron	13588790	13588790	+	asmbl_43137	none	Trinity_GG_2734_c0_g1_i1,blat.proc3829873.chain_1243	2	STRG.4984.1,STRG.4984.2,STRG.4984.3,blat.proc3829873.chain_1241,blat.proc3829873.chain_1242	5
scaffold_9	alt_donor	16567709	16567710	+	asmbl_54575,asmbl_54577,asmbl_54579	none	STRG.11798.1,Trinity_GG_6586_c0_g1_i10,Trinity_GG_6586_c0_g1_i5,blat.proc3829877.chain_555,blat.proc3829877.chain_557	5	STRG.11798.2,Trinity_GG_6586_c0_g1_i14,Trinity_GG_6586_c0_g1_i15,Trinity_GG_6586_c0_g1_i21,Trinity_GG_6586_c0_g1_i23,blat.proc3829877.chain_552,blat.proc3829877.chain_554,blat.proc3829877.chain_556,blat.proc3829877.chain_558	9
scaffold_2	alt_donor	4006914	4006915	-	asmbl_23062	none	STRG.1838.2	1	STRG.1838.1,Trinity_GG_18041_c0_g1_i1,blat.proc3829887.chain_1692	3
scaffold_18	ends_in_intron	11467731	11467731	-	asmbl_20165	none	blat.proc3829897.chain_2486	1	STRG.21668.1,blat.proc3829897.chain_2487	2
scaffold_17	alt_acceptor	10023609	10023610	+	asmbl_18281,asmbl_18283	none	STRG.20606.1,STRG.20606.3	2	STRG.20606.2	1
scaffold_3	spliced_intron	14433082	14433258	-	asmbl_39318,asmbl_39322	none	STRG.3781.2,STRG.3781.3,Trinity_GG_19066_c0_g1_i4,blat.proc3829887.chain_3507	4	STRG.3781.1,Trinity_GG_19066_c0_g1_i1,Trinity_GG_19066_c0_g1_i3,blat.proc3829887.chain_3506,blat.proc3829887.chain_3509	5
scaffold_26	spliced_intron	2809035	2809204	-	asmbl_34723	none	STRG.27959.2	1	STRG.27959.1	1
scaffold_13	skipped_exon	1361221	1361994	-	asmbl_9365	none	STRG.15492.2	1	STRG.15492.1,blat.proc3829895.chain_135	2
scaffold_10	spliced_intron	5390028	5390517	+	asmbl_4446,asmbl_4447	none	STRG.12356.2,blat.proc3829877.chain_994	2	Trinity_GG_6848_c0_g1_i3,blat.proc3829877.chain_993	2
scaffold_4	alt_donor	16481100	16481101	-	asmbl_41931	none	Trinity_GG_19942_c0_g2_i1,blat.proc3829889.chain_1291	2	STRG.5226.1,blat.proc3829889.chain_1289	2
scaffold_1	retained_intron	6215109	6215240	-	asmbl_327	none	STRG.416.2,Trinity_GG_17235_c1_g1_i1,blat.proc3829887.chain_287	3	STRG.416.1,Trinity_GG_17235_c1_g1_i2,blat.proc3829887.chain_288	3
scaffold_10	starts_in_intron	7765446	7765446	-	asmbl_3468	none	Trinity_GG_24022_c0_g1_i4	1	STRG.12555.1,STRG.12555.2,blat.proc3829893.chain_1042,blat.proc3829893.chain_1044	4
scaffold_17	starts_in_intron	681825	681825	-	asmbl_18688	none	blat.proc3829897.chain_877	1	STRG.19908.1,STRG.19908.2,STRG.19908.3,blat.proc3829897.chain_873,blat.proc3829897.chain_875,blat.proc3829897.chain_876	6
scaffold_12	alternate_exon	13403362	13406730	-	asmbl_8073	none	STRG.15208.2,blat.proc3829893.chain_3625	2	STRG.15208.3,blat.proc3829893.chain_3626	2
scaffold_26	starts_in_intron	8732133	8732133	-	asmbl_35020	none	blat.proc3829901.chain_1592	1	STRG.28438.1,blat.proc3829901.chain_1591	2
scaffold_21	spliced_intron	9866643	9866822	-	asmbl_27998	none	STRG.24438.3	1	STRG.24438.1	1
scaffold_27	alt_acceptor	571654	571655	+	asmbl_35915	none	STRG.28558.2,blat.proc3829885.chain_1604	2	blat.proc3829885.chain_1603	1
scaffold_18	starts_in_intron	3791778	3791778	-	asmbl_19816	none	STRG.21185.2	1	STRG.21185.1,STRG.21185.3,blat.proc3829897.chain_2077,blat.proc3829897.chain_2078,blat.proc3829897.chain_2079,blat.proc3829897.chain_2080,blat.proc3829897.chain_2083,blat.proc3829897.chain_2084	8
scaffold_5	starts_in_intron	10297511	10297511	-	asmbl_45723	none	blat.proc3829889.chain_2411	1	STRG.6324.1,STRG.6324.2,STRG.6324.3,blat.proc3829889.chain_2410,blat.proc3829889.chain_2412	5
scaffold_23	alt_acceptor	4091581	4091582	+	asmbl_30780	none	STRG.25798.2,blat.proc3829883.chain_2692	2	STRG.25798.1,Trinity_GG_14243_c0_g1_i1,blat.proc3829883.chain_2693	3
scaffold_12	alt_donor	11335363	11335364	-	asmbl_7932	none	STRG.15058.1	1	STRG.15058.2	1
scaffold_6	alt_donor	10898595	10898596	+	asmbl_47244	none	Trinity_GG_4335_c0_g1_i1,blat.proc3829875.chain_288	2	STRG.7901.1,STRG.7901.2,blat.proc3829875.chain_290,blat.proc3829875.chain_292	4
scaffold_14	retained_intron	8212830	8213288	-	asmbl_13241	none	blat.proc3829895.chain_1929	1	STRG.17218.1,STRG.17218.2,STRG.17218.3,blat.proc3829895.chain_1928,blat.proc3829895.chain_1930,blat.proc3829895.chain_1931	6
scaffold_9	retained_intron	16570130	16570300	+	asmbl_54573,asmbl_54575,asmbl_54577	none	Trinity_GG_6586_c0_g1_i10,Trinity_GG_6586_c0_g1_i23,Trinity_GG_6586_c0_g1_i5,blat.proc3829877.chain_552,blat.proc3829877.chain_555,blat.proc3829877.chain_557	6	STRG.11798.1,STRG.11798.2,Trinity_GG_6586_c0_g1_i14,Trinity_GG_6586_c0_g1_i15,Trinity_GG_6586_c0_g1_i21,Trinity_GG_6586_c0_g1_i6,blat.proc3829877.chain_551,blat.proc3829877.chain_553,blat.proc3829877.chain_554,blat.proc3829877.chain_556,blat.proc3829877.chain_558	11
scaffold_24	retained_intron	3701651	3701884	+	asmbl_32172	none	Trinity_GG_14680_c1_g1_i1,blat.proc3829883.chain_3452	2	STRG.26537.1,blat.proc3829883.chain_3449,blat.proc3829883.chain_3450,blat.proc3829883.chain_3451	4
scaffold_8	starts_in_intron	4317562	4317562	+	asmbl_51819	none	blat.proc3829875.chain_2427	1	STRG.9904.1,blat.proc3829875.chain_2428	2
scaffold_9	retained_intron	7796656	7797444	+	asmbl_54121,asmbl_54128,asmbl_54130	none	blat.proc3829875.chain_3709,blat.proc3829875.chain_3710,blat.proc3829875.chain_3713,blat.proc3829875.chain_3716	4	blat.proc3829875.chain_3706,blat.proc3829875.chain_3708,blat.proc3829875.chain_3711,blat.proc3829875.chain_3714	4
scaffold_27	spliced_intron	927062	927428	-	asmbl_36667,asmbl_36668	none	STRG.28568.2,Trinity_GG_32939_c0_g1_i3,Trinity_GG_32939_c0_g1_i4,blat.proc3829901.chain_1649,blat.proc3829901.chain_1651	5	STRG.28568.1,Trinity_GG_32939_c0_g1_i2,blat.proc3829901.chain_1650	3
scaffold_20	skipped_exon	12113774	12115279	+	asmbl_26268	none	blat.proc3829883.chain_833	1	STRG.23696.1,Trinity_GG_13119_c0_g1_i1,Trinity_GG_13119_c0_g1_i3,blat.proc3829883.chain_832,blat.proc3829883.chain_834,blat.proc3829883.chain_835	6
scaffold_8	spliced_intron	6160014	6160658	-	asmbl_52853	none	STRG.10012.1,Trinity_GG_22628_c0_g1_i1,blat.proc3829891.chain_2214	3	STRG.10012.3,blat.proc3829891.chain_2213,blat.proc3829891.chain_2216,blat.proc3829891.chain_2218	4
scaffold_12	alternate_exon	4785219	4786032	-	asmbl_7581,asmbl_7589	none	STRG.14646.1,blat.proc3829893.chain_3022,blat.proc3829893.chain_3023	3	STRG.14646.2,STRG.14646.3,STRG.14646.4,blat.proc3829893.chain_3017,blat.proc3829893.chain_3018,blat.proc3829893.chain_3019,blat.proc3829893.chain_3025	7
scaffold_14	alt_acceptor	2501677	2501678	-	asmbl_12946	none	STRG.16847.2	1	STRG.16847.1,blat.proc3829895.chain_1545	2
scaffold_9	retained_exon	6920093	6920161	-	asmbl_55065,asmbl_55066,asmbl_55069	none	STRG.11195.1,STRG.11195.2,blat.proc3829891.chain_3350,blat.proc3829891.chain_3351,blat.proc3829891.chain_3352	5	blat.proc3829891.chain_3349	1
scaffold_7	alternate_exon	15924824	15924942	-	asmbl_50212	none	STRG.9561.3	1	STRG.9561.2	1
scaffold_8	alt_acceptor	3615919	3615920	+	asmbl_51778	none	STRG.9854.3	1	STRG.9854.2,blat.proc3829875.chain_2279	2
scaffold_15	alternate_exon	15443363	15443733	+	asmbl_14747	none	STRG.18933.2	1	Trinity_GG_10389_c0_g1_i2,Trinity_GG_10389_c0_g1_i7,blat.proc3829879.chain_3560,blat.proc3829879.chain_3565	4
scaffold_13	alt_acceptor	8300381	8300382	+	asmbl_11102,asmbl_11103,asmbl_11104	none	STRG.16108.1,blat.proc3829879.chain_866,blat.proc3829879.chain_867,blat.proc3829879.chain_868	4	STRG.16108.2	1
scaffold_25	skipped_exon	7803095	7803570	-	asmbl_34380	none	blat.proc3829901.chain_899	1	STRG.27583.1,blat.proc3829901.chain_897,blat.proc3829901.chain_898	3
scaffold_19	spliced_intron	13236971	13237060	-	asmbl_21826,asmbl_21827,asmbl_21831	none	STRG.22682.1,STRG.22682.3,STRG.22682.4,blat.proc3829897.chain_3355,blat.proc3829897.chain_3356,blat.proc3829897.chain_3357	6	STRG.22682.5,blat.proc3829897.chain_3354	2
scaffold_5	alt_acceptor	16283073	16283074	+	asmbl_44734	none	Trinity_GG_3715_c0_g1_i3,blat.proc3829873.chain_2925	2	Trinity_GG_3715_c0_g1_i5,Trinity_GG_3715_c0_g1_i6,blat.proc3829873.chain_2926,blat.proc3829873.chain_2927	4
scaffold_6	alt_acceptor	8581386	8581387	+	asmbl_47086	none	STRG.7732.2	1	blat.proc3829875.chain_111,blat.proc3829875.chain_112	2
scaffold_13	spliced_intron	400122	400388	-	asmbl_9305,asmbl_9307,asmbl_9308,asmbl_9309,asmbl_9310,asmbl_9311,asmbl_9314,asmbl_9315,asmbl_9316,asmbl_9317,asmbl_9318	none	STRG.15428.1,STRG.15428.2,STRG.15428.3,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i7,Trinity_GG_25691_c0_g1_i8,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_220,blat.proc3829895.chain_221,blat.proc3829895.chain_222,blat.proc3829895.chain_224,blat.proc3829895.chain_226,blat.proc3829895.chain_230,blat.proc3829895.chain_232,blat.proc3829895.chain_233	17	Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i25,blat.proc3829895.chain_223,blat.proc3829895.chain_229	4
scaffold_1	ends_in_intron	16520707	16520707	+	asmbl_2468	none	Trinity_GG_638_c0_g1_i3	1	blat.proc3829871.chain_1158	1
scaffold_14	skipped_exon	1721037	1721580	+	asmbl_11807	none	STRG.16801.2,Trinity_GG_9249_c0_g1_i1,blat.proc3829879.chain_1527	3	STRG.16801.1,Trinity_GG_9249_c0_g1_i2,blat.proc3829879.chain_1528	3
scaffold_1	spliced_intron	14354987	14355171	-	asmbl_905	none	blat.proc3829887.chain_906	1	Trinity_GG_17550_c0_g1_i3,blat.proc3829887.chain_907,blat.proc3829887.chain_908,blat.proc3829887.chain_909,blat.proc3829887.chain_910	5
scaffold_14	starts_in_intron	67897	67897	+	asmbl_11715	none	Trinity_GG_9196_c0_g1_i2,blat.proc3829879.chain_1425	2	STRG.16688.1	1
scaffold_12	retained_intron	12288119	12290941	-	asmbl_7986	none	STRG.15114.1,Trinity_GG_25420_c1_g1_i1,blat.proc3829893.chain_3462	3	STRG.15114.5	1
scaffold_5	starts_in_intron	10534616	10534616	-	asmbl_45742	none	STRG.6332.1,blat.proc3829889.chain_2347	2	STRG.6332.2,blat.proc3829889.chain_2348	2
scaffold_3	alternate_exon	5005279	5005675	+	asmbl_40015	none	STRG.3199.3	1	STRG.3199.1,STRG.3199.2	2
scaffold_13	spliced_intron	6762160	6762916	+	asmbl_10957	none	blat.proc3829879.chain_632	1	STRG.15952.1,STRG.15952.2,Trinity_GG_8761_c0_g1_i2,blat.proc3829879.chain_633,blat.proc3829879.chain_634	5
scaffold_20	spliced_intron	5180977	5181010	+	asmbl_25761	none	STRG.23141.1	1	STRG.23141.2	1
scaffold_3	alt_acceptor	10934629	10934630	-	asmbl_39075,asmbl_39076	none	STRG.3534.1,STRG.3534.2,blat.proc3829887.chain_3294,blat.proc3829887.chain_3295	4	STRG.3534.3,STRG.3534.4	2
scaffold_25	retained_exon	6438069	6438181	+	asmbl_33627	none	STRG.27506.1,blat.proc3829885.chain_535	2	STRG.27506.3	1
scaffold_2	starts_in_intron	17614373	17614373	+	asmbl_25222	none	Trinity_GG_1507_c2_g1_i1,blat.proc3829871.chain_2859	2	STRG.2650.1,STRG.2650.2,Trinity_GG_1507_c1_g1_i1,blat.proc3829871.chain_2858	4
scaffold_10	starts_in_intron	5173929	5173929	+	asmbl_4428,asmbl_4432	none	blat.proc3829877.chain_983,blat.proc3829877.chain_984	2	STRG.12337.1,STRG.12337.2,blat.proc3829877.chain_985	3
scaffold_7	starts_in_intron	8712564	8712564	-	asmbl_49842	none	STRG.9102.2,blat.proc3829891.chain_1361	2	STRG.9102.1	1
scaffold_8	spliced_intron	12560537	12560677	+	asmbl_52310	none	STRG.10419.1,Trinity_GG_5777_c0_g1_i1,blat.proc3829875.chain_2890	3	STRG.10419.2	1
scaffold_28	starts_in_intron	8577078	8577078	+	asmbl_38457	none	blat.proc3829885.chain_3017	1	STRG.29916.1,blat.proc3829885.chain_3016,blat.proc3829885.chain_3018	3
scaffold_3	starts_in_intron	5781745	5781745	-	asmbl_38815	none	blat.proc3829887.chain_2962	1	STRG.3244.2,STRG.3244.3,STRG.3244.4	3
scaffold_5	starts_in_intron	12661394	12661394	+	asmbl_44481	none	STRG.6495.3,blat.proc3829873.chain_2577	2	STRG.6495.1,STRG.6495.2,blat.proc3829873.chain_2574,blat.proc3829873.chain_2575,blat.proc3829873.chain_2576,blat.proc3829873.chain_2578,blat.proc3829873.chain_2579,blat.proc3829873.chain_2580	8
scaffold_10	retained_exon	12856951	12857039	-	asmbl_3738	none	STRG.12862.2	1	STRG.12862.1	1
scaffold_3	ends_in_intron	10302499	10302499	+	asmbl_40219	none	blat.proc3829871.chain_3654	1	STRG.3466.1,STRG.3466.2,STRG.3466.3,Trinity_GG_1968_c0_g2_i1,blat.proc3829871.chain_3656	5
scaffold_2	retained_intron	4578467	4578717	+	asmbl_24378	none	STRG.1884.1,Trinity_GG_1044_c1_g1_i3,blat.proc3829871.chain_1914	3	STRG.1884.3	1
scaffold_17	alternate_exon	8648960	8649074	-	asmbl_19157	none	STRG.20471.1	1	STRG.20471.2	1
scaffold_18	starts_in_intron	8399310	8399310	+	asmbl_20860,asmbl_20861,asmbl_20862	none	STRG.21503.3,STRG.21503.4,blat.proc3829881.chain_2516	3	STRG.21503.1,STRG.21503.2,blat.proc3829881.chain_2515	3
scaffold_9	retained_exon	15384544	15384598	+	asmbl_54537,asmbl_54541	none	STRG.11728.1,blat.proc3829877.chain_490,blat.proc3829877.chain_493	3	STRG.11728.2,blat.proc3829877.chain_488,blat.proc3829877.chain_489,blat.proc3829877.chain_491	4
scaffold_19	retained_exon	3548064	3548176	-	asmbl_21319	none	STRG.22032.2,blat.proc3829897.chain_2771	2	STRG.22032.1	1
scaffold_14	starts_in_intron	6685391	6685391	-	asmbl_13135	none	blat.proc3829895.chain_1794	1	STRG.17094.1,STRG.17094.2,blat.proc3829895.chain_1795	3
scaffold_6	alt_acceptor	3521002	3521003	+	asmbl_46793	none	STRG.7355.2	1	STRG.7355.1	1
scaffold_3	spliced_intron	9518619	9518734	+	asmbl_40185,asmbl_40186,asmbl_40187	none	STRG.3434.1,STRG.3434.2,Trinity_GG_1959_c0_g1_i1,blat.proc3829871.chain_3639,blat.proc3829871.chain_3641	5	Trinity_GG_1959_c0_g1_i3,blat.proc3829871.chain_3637	2
scaffold_6	alternate_exon	2480020	2482546	-	asmbl_48079	none	STRG.7236.3	1	STRG.7236.2	1
scaffold_18	alt_donor	1327611	1327612	+	asmbl_20361,asmbl_20362,asmbl_20366	none	STRG.21011.1,STRG.21011.3,blat.proc3829881.chain_1877,blat.proc3829881.chain_1880	4	STRG.21011.2,blat.proc3829881.chain_1878	2
scaffold_4	skipped_exon	7150900	7151964	+	asmbl_42802,asmbl_42805	none	STRG.4558.4,blat.proc3829873.chain_883,blat.proc3829873.chain_884	3	STRG.4558.1,STRG.4558.3,STRG.4558.5	3
scaffold_18	alt_donor	7944086	7944087	-	asmbl_20025	none	STRG.21483.2	1	STRG.21483.3,blat.proc3829897.chain_2326	2
scaffold_2	retained_exon	487354	487525	-	asmbl_22829,asmbl_22830	none	STRG.1533.1,STRG.1533.3,blat.proc3829887.chain_1414,blat.proc3829887.chain_1416	4	STRG.1533.2	1
scaffold_16	ends_in_intron	8095942	8095942	+	asmbl_17178	none	blat.proc3829881.chain_302	1	STRG.19440.1,Trinity_GG_10640_c0_g1_i1,blat.proc3829881.chain_300	3
scaffold_15	alt_donor	1504631	1504632	-	asmbl_14969	none	blat.proc3829895.chain_2661	1	STRG.17945.1,STRG.17945.2,blat.proc3829895.chain_2658,blat.proc3829895.chain_2662	4
scaffold_17	retained_intron	1292002	1292412	-	asmbl_18726	none	STRG.19952.5,blat.proc3829897.chain_841	2	STRG.19952.1,blat.proc3829897.chain_840	2
scaffold_3170	retained_intron	312	455	+	asmbl_40888	none	STRG.30808.1	1	STRG.30808.2	1
scaffold_10	alt_donor	3065892	3065893	-	asmbl_3074	none	blat.proc3829893.chain_572	1	STRG.12119.1,Trinity_GG_23763_c0_g1_i2,blat.proc3829893.chain_569	3
scaffold_3	starts_in_intron	80168	80168	+	asmbl_39759	none	STRG.2889.2,Trinity_GG_1653_c3_g1_i1,blat.proc3829871.chain_3091	3	STRG.2889.1,Trinity_GG_1653_c0_g1_i2	2
scaffold_23	skipped_exon	4099715	4100533	-	asmbl_31553	none	STRG.25802.2	1	blat.proc3829899.chain_2934	1
scaffold_16	alt_acceptor	8291494	8291495	+	asmbl_17184	none	STRG.19447.2,blat.proc3829881.chain_316	2	STRG.19447.1,blat.proc3829881.chain_317	2
scaffold_15	skipped_exon	6883631	6884459	-	asmbl_15276	none	STRG.18290.3,Trinity_GG_27246_c0_g1_i5,blat.proc3829895.chain_2935	3	STRG.18290.2,blat.proc3829895.chain_2933,blat.proc3829895.chain_2934,blat.proc3829895.chain_2936,blat.proc3829895.chain_2940	5
scaffold_25	alt_acceptor	4820564	4820565	+	asmbl_33534,asmbl_33535,asmbl_33536,asmbl_33537	none	STRG.27398.1,STRG.27398.2,Trinity_GG_15069_c0_g1_i1,Trinity_GG_15069_c0_g1_i3,blat.proc3829885.chain_358,blat.proc3829885.chain_360	6	STRG.27398.3,STRG.27398.4,Trinity_GG_15069_c0_g1_i2,blat.proc3829885.chain_359	4
scaffold_15	retained_intron	8620031	8620119	+	asmbl_14286	none	Trinity_GG_10092_c0_g1_i2,blat.proc3829879.chain_3014	2	STRG.18401.1,STRG.18401.2,blat.proc3829879.chain_3012,blat.proc3829879.chain_3013	4
scaffold_18	retained_intron	2834262	2835573	+	asmbl_20453	none	Trinity_GG_11580_c0_g1_i11,blat.proc3829881.chain_1919	2	STRG.21133.4,blat.proc3829881.chain_1914	2
scaffold_7	spliced_intron	1235216	1235301	+	asmbl_50479,asmbl_50480	none	STRG.8627.5,blat.proc3829875.chain_1043	2	STRG.8627.2,STRG.8627.6,STRG.8627.8,Trinity_GG_4740_c0_g1_i13,Trinity_GG_4740_c0_g1_i14,blat.proc3829875.chain_1044,blat.proc3829875.chain_1045,blat.proc3829875.chain_1048,blat.proc3829875.chain_1049	9
scaffold_2	spliced_intron	14623015	14623109	+	asmbl_24990	none	STRG.2455.1,blat.proc3829871.chain_2633	2	blat.proc3829871.chain_2632	1
scaffold_13	alt_acceptor	381874	381875	-	asmbl_9291,asmbl_9295	none	STRG.15421.1,STRG.15421.3,blat.proc3829895.chain_149	3	STRG.15421.4,blat.proc3829895.chain_150	2
scaffold_4	starts_in_intron	17901690	17901690	-	asmbl_42072	none	blat.proc3829889.chain_1458	1	STRG.5380.1	1
scaffold_23	alt_donor	9941908	9941909	+	asmbl_31107	none	STRG.26173.1	1	STRG.26173.3	1
scaffold_6	retained_intron	6755355	6755511	-	asmbl_48403	none	STRG.7580.1	1	blat.proc3829889.chain_3632	1
scaffold_7	retained_intron	13552407	13554063	-	asmbl_50130	none	blat.proc3829891.chain_1630	1	STRG.9466.1,blat.proc3829891.chain_1631	2
scaffold_23	alternate_exon	4097681	4101228	-	asmbl_31549,asmbl_31554	none	STRG.25802.1,STRG.25802.4,STRG.25802.5	3	blat.proc3829899.chain_2935	1
scaffold_4	starts_in_intron	12689912	12689912	-	asmbl_41694	none	blat.proc3829889.chain_921	1	blat.proc3829889.chain_919	1
scaffold_15	spliced_intron	8829496	8829673	+	asmbl_14301	none	STRG.18418.1,blat.proc3829879.chain_3054	2	Trinity_GG_10116_c0_g1_i2,blat.proc3829879.chain_3053,blat.proc3829879.chain_3055	3
scaffold_15	starts_in_intron	3685559	3685559	-	asmbl_15117	none	blat.proc3829895.chain_2895	1	STRG.18132.2,STRG.18132.3,blat.proc3829895.chain_2892,blat.proc3829895.chain_2894	4
scaffold_3	starts_in_intron	6012559	6012559	-	asmbl_38838	none	STRG.3255.6	1	STRG.3255.1,STRG.3255.2,STRG.3255.3,STRG.3255.5,STRG.3255.7,blat.proc3829887.chain_3062	6
scaffold_27	skipped_exon	616486	616959	+	asmbl_35924	none	STRG.28561.1	1	STRG.28561.2,blat.proc3829885.chain_1611	2
scaffold_27	retained_intron	2997816	2997932	+	asmbl_36110,asmbl_36120	none	STRG.28767.4,blat.proc3829885.chain_1844,blat.proc3829885.chain_1847	3	blat.proc3829885.chain_1841	1
scaffold_2	starts_in_intron	7171908	7171908	+	asmbl_24569	none	Trinity_GG_1166_c0_g1_i2,blat.proc3829871.chain_2134	2	STRG.2053.1,Trinity_GG_1166_c0_g1_i1,blat.proc3829871.chain_2133	3
scaffold_10	retained_intron	3732814	3732994	+	asmbl_4346,asmbl_4347	none	STRG.12193.1,blat.proc3829877.chain_871,blat.proc3829877.chain_872	3	STRG.12193.2,blat.proc3829877.chain_869	2
scaffold_7	alt_donor	15249045	15249046	+	asmbl_51305	none	blat.proc3829875.chain_2041	1	STRG.9529.1,STRG.9529.2,STRG.9529.3,blat.proc3829875.chain_2038,blat.proc3829875.chain_2039,blat.proc3829875.chain_2040	6
scaffold_16	starts_in_intron	3866715	3866715	-	asmbl_16181	none	blat.proc3829897.chain_221	1	STRG.19184.1,STRG.19184.2,STRG.19184.3,blat.proc3829897.chain_216,blat.proc3829897.chain_217	5
scaffold_15	starts_in_intron	1712615	1712615	+	asmbl_13975	none	Trinity_GG_9863_c0_g1_i4,blat.proc3829879.chain_2613	2	STRG.17968.1,STRG.17968.2,STRG.17968.3,blat.proc3829879.chain_2609,blat.proc3829879.chain_2610,blat.proc3829879.chain_2611,blat.proc3829879.chain_2612,blat.proc3829879.chain_2614	8
scaffold_5	retained_exon	238630	238772	-	asmbl_45152	none	STRG.5594.3	1	STRG.5594.4	1
scaffold_7	alt_donor	8296344	8296345	-	asmbl_49809	none	STRG.9056.2,blat.proc3829891.chain_1238	2	STRG.9056.1,blat.proc3829891.chain_1235	2
scaffold_566	retained_intron	3943	4175	+	asmbl_46536	none	Trinity_GG_16802_c0_g1_i7,blat.proc3829879.chain_708,blat.proc3829885.chain_3387	3	STRG.30371.1	1
scaffold_1	starts_in_intron	9121559	9121559	+	asmbl_1949	none	Trinity_GG_389_c0_g1_i3,blat.proc3829871.chain_673	2	STRG.604.1	1
scaffold_5	alt_acceptor	7410140	7410141	-	asmbl_45558,asmbl_45560	none	STRG.6135.1,STRG.6135.3	2	STRG.6135.2	1
scaffold_6	alt_acceptor	4125983	4125984	-	asmbl_48231	none	STRG.7384.3	1	STRG.7384.2	1
scaffold_6	retained_intron	10724279	10724368	+	asmbl_47226	none	STRG.7885.3,blat.proc3829875.chain_259	2	STRG.7885.1,STRG.7885.2,blat.proc3829875.chain_260,blat.proc3829875.chain_261	4
scaffold_7	retained_exon	1233916	1235346	+	asmbl_50480	none	STRG.8627.5	1	STRG.8627.3,STRG.8627.7,STRG.8627.9,Trinity_GG_4740_c0_g1_i16,blat.proc3829875.chain_1042	5
scaffold_1	alt_donor	1216857	1216858	-	asmbl_49,asmbl_50	none	STRG.64.3,blat.proc3829885.chain_3727	2	STRG.64.1,Trinity_GG_17052_c0_g1_i1,blat.proc3829885.chain_3726	3
scaffold_20	retained_exon	11600427	11600444	-	asmbl_27092	none	STRG.23657.3	1	STRG.23657.2	1
scaffold_8	alt_acceptor	16043891	16043892	-	asmbl_53359	none	STRG.10582.1,blat.proc3829891.chain_2667	2	STRG.10582.2,blat.proc3829891.chain_2668	2
scaffold_1	alt_acceptor	9267739	9267740	-	asmbl_537	none	STRG.623.2	1	STRG.623.1,blat.proc3829887.chain_487	2
scaffold_2	retained_exon	9195437	9195535	-	asmbl_23378,asmbl_23380,asmbl_23382	none	STRG.2167.1,Trinity_GG_18242_c0_g1_i3,Trinity_GG_18242_c0_g1_i4,Trinity_GG_18242_c0_g1_i7,blat.proc3829887.chain_2100,blat.proc3829887.chain_2102,blat.proc3829887.chain_2104	7	STRG.2167.2,Trinity_GG_18242_c0_g1_i1,Trinity_GG_18242_c0_g1_i2,blat.proc3829887.chain_2099,blat.proc3829887.chain_2101	5
scaffold_14	alt_acceptor	2271052	2271053	-	asmbl_12911	none	STRG.16826.2,Trinity_GG_26431_c0_g1_i2,blat.proc3829895.chain_1516	3	STRG.16826.1,Trinity_GG_26431_c0_g1_i1,blat.proc3829895.chain_1515	3
scaffold_15	alt_acceptor	3021714	3021715	+	asmbl_14034	none	STRG.18078.2,blat.proc3829879.chain_2716	2	STRG.18078.1,blat.proc3829879.chain_2717	2
scaffold_27	starts_in_intron	2685714	2685714	+	asmbl_36060	none	Trinity_GG_15887_c0_g1_i2,blat.proc3829885.chain_1740	2	STRG.28723.1,blat.proc3829885.chain_1739,blat.proc3829885.chain_1741	3
scaffold_8	alt_acceptor	3219225	3219226	+	asmbl_51737,asmbl_51739	none	STRG.9823.5,blat.proc3829875.chain_2322	2	STRG.9823.3,Trinity_GG_5470_c1_g1_i2,blat.proc3829875.chain_2323	3
scaffold_9	alt_acceptor	11829822	11829823	-	asmbl_55286	none	STRG.11487.2	1	STRG.11487.1	1
scaffold_3	spliced_intron	7927018	7927366	+	asmbl_40145	none	STRG.3376.3	1	STRG.3376.2	1
scaffold_2	spliced_intron	17838616	17838702	-	asmbl_23768	none	STRG.2671.1,blat.proc3829887.chain_2495	2	blat.proc3829887.chain_2496	1
scaffold_13	ends_in_intron	2324711	2324711	+	asmbl_10573	none	Trinity_GG_8511_c1_g1_i5,blat.proc3829879.chain_168	2	STRG.15543.2,STRG.15543.3,STRG.15543.4,STRG.15543.5,STRG.15543.6,STRG.15543.7,STRG.15543.8,STRG.15543.9,blat.proc3829879.chain_170,blat.proc3829879.chain_173	10
scaffold_6	retained_intron	801723	801746	+	asmbl_46630	none	STRG.7135.2	1	STRG.7135.3	1
scaffold_14	alt_acceptor	15565917	15565918	+	asmbl_12607,asmbl_12608	none	STRG.17784.2,STRG.17784.3	2	blat.proc3829879.chain_2468	1
scaffold_14	alternate_exon	15831227	15831399	-	asmbl_13739	none	STRG.17811.2	1	STRG.17811.1	1
scaffold_12	spliced_intron	14123567	14123697	-	asmbl_8119,asmbl_8120,asmbl_8122	none	STRG.15232.1,blat.proc3829893.chain_3707,blat.proc3829893.chain_3709	3	STRG.15232.2,Trinity_GG_25557_c0_g1_i2,blat.proc3829893.chain_3706	3
scaffold_13	spliced_intron	5841697	5842514	-	asmbl_9692	none	STRG.15879.1,blat.proc3829895.chain_573	2	blat.proc3829895.chain_571,blat.proc3829895.chain_572	2
scaffold_22	alt_acceptor	10984494	10984495	-	asmbl_30405,asmbl_30406	none	STRG.25414.2,STRG.25414.4,Trinity_GG_31214_c0_g1_i2,Trinity_GG_31214_c0_g1_i4,blat.proc3829899.chain_2490,blat.proc3829899.chain_2491	6	Trinity_GG_31214_c0_g1_i1,blat.proc3829899.chain_2489	2
scaffold_18	alt_acceptor	3915401	3915402	-	asmbl_19820	none	STRG.21192.1	1	STRG.21192.2,STRG.21192.3,STRG.21192.4,STRG.21192.5,blat.proc3829897.chain_2089	5
scaffold_23	retained_intron	1458422	1458455	+	asmbl_30632	none	STRG.25600.1,blat.proc3829883.chain_2517	2	blat.proc3829883.chain_2518	1
scaffold_13	alt_donor	3322053	3322054	-	asmbl_9489,asmbl_9490	none	STRG.15625.1,Trinity_GG_25777_c0_g1_i1,Trinity_GG_25777_c0_g1_i2,blat.proc3829895.chain_380,blat.proc3829895.chain_381	5	STRG.15625.2	1
scaffold_3	spliced_intron	13988803	13989050	+	asmbl_40435,asmbl_40437	none	STRG.3741.3,STRG.3741.4,Trinity_GG_2070_c0_g1_i1,blat.proc3829873.chain_88	4	STRG.3741.2,Trinity_GG_2070_c0_g1_i4,blat.proc3829873.chain_87	3
scaffold_6	ends_in_intron	12993806	12993806	-	asmbl_48805	none	Trinity_GG_21547_c0_g1_i10,blat.proc3829891.chain_259	2	STRG.8061.1,STRG.8061.2,STRG.8061.3,STRG.8061.4,blat.proc3829891.chain_260,blat.proc3829891.chain_262,blat.proc3829891.chain_263,blat.proc3829891.chain_264,blat.proc3829891.chain_271,blat.proc3829891.chain_272,blat.proc3829891.chain_275	11
scaffold_23	starts_in_intron	2633764	2633764	+	asmbl_30714	none	Trinity_GG_14194_c0_g1_i5,blat.proc3829883.chain_2619	2	STRG.25710.1,STRG.25710.2,STRG.25710.3	3
scaffold_22	retained_exon	9721164	9721808	+	asmbl_29602	none	STRG.25292.2	1	STRG.25292.3	1
scaffold_25	starts_in_intron	5155595	5155595	-	asmbl_34226	none	Trinity_GG_32386_c0_g1_i4,blat.proc3829901.chain_744	2	STRG.27422.1,blat.proc3829901.chain_742,blat.proc3829901.chain_745,blat.proc3829901.chain_746,blat.proc3829901.chain_748	5
scaffold_18	spliced_intron	13804460	13804704	+	asmbl_21054,asmbl_21055,asmbl_21060	none	STRG.21804.1,STRG.21804.2,Trinity_GG_12056_c0_g1_i3,blat.proc3829881.chain_2755,blat.proc3829881.chain_2758	5	Trinity_GG_12056_c0_g1_i2,blat.proc3829881.chain_2756,blat.proc3829881.chain_2757	3
scaffold_8	skipped_exon	17972241	17974549	-	asmbl_53506	none	STRG.10695.1,Trinity_GG_22958_c0_g1_i1,blat.proc3829891.chain_2852	3	STRG.10695.2	1
scaffold_15	ends_in_intron	4961363	4961363	+	asmbl_14117,asmbl_14122	none	STRG.18193.2,blat.proc3829879.chain_2765	2	STRG.18193.1,blat.proc3829879.chain_2759,blat.proc3829879.chain_2761	3
scaffold_12	alternate_exon	12439703	12439738	+	asmbl_8971	none	STRG.15137.1	1	STRG.15137.2,STRG.15137.3,STRG.15137.4,blat.proc3829877.chain_3558,blat.proc3829877.chain_3559,blat.proc3829877.chain_3560	6
scaffold_7	retained_intron	9149763	9149863	+	asmbl_50953	none	Trinity_GG_5028_c0_g1_i1,blat.proc3829875.chain_1517	2	STRG.9122.1	1
scaffold_14	retained_intron	8330057	8330148	-	asmbl_13270	none	blat.proc3829895.chain_1946	1	STRG.17243.1,blat.proc3829895.chain_1947	2
scaffold_4	ends_in_intron	294978	294978	-	asmbl_41064	none	Trinity_GG_19317_c0_g1_i3,blat.proc3829889.chain_249	2	Trinity_GG_19317_c0_g1_i1,Trinity_GG_19317_c0_g1_i4,blat.proc3829889.chain_248,blat.proc3829889.chain_250	4
scaffold_15	alt_donor	11142115	11142116	-	asmbl_15501,asmbl_15502,asmbl_15503,asmbl_15504	none	blat.proc3829895.chain_3286,blat.proc3829895.chain_3287,blat.proc3829895.chain_3288,blat.proc3829895.chain_3289	4	blat.proc3829895.chain_3283	1
scaffold_20	retained_exon	11567538	11567899	+	asmbl_26226	none	STRG.23649.2,Trinity_GG_13096_c0_g1_i1,blat.proc3829883.chain_791	3	STRG.23649.1,blat.proc3829883.chain_792,blat.proc3829883.chain_793	3
scaffold_4	spliced_intron	10447539	10447632	-	asmbl_41588,asmbl_41589,asmbl_41590,asmbl_41592,asmbl_41593,asmbl_41594,asmbl_41596	none	STRG.4795.1,STRG.4795.2,STRG.4795.3,blat.proc3829889.chain_832,blat.proc3829889.chain_834,blat.proc3829889.chain_835,blat.proc3829889.chain_838,blat.proc3829889.chain_839	8	blat.proc3829889.chain_837	1
scaffold_12	retained_exon	2721927	2721995	+	asmbl_8481	none	Trinity_GG_8024_c0_g1_i5,blat.proc3829877.chain_3019	2	Trinity_GG_8024_c0_g1_i4,blat.proc3829877.chain_3017	2
scaffold_6	spliced_intron	18716897	18717097	+	asmbl_47790	none	STRG.8532.2	1	STRG.8532.1,Trinity_GG_4700_c0_g1_i3,Trinity_GG_4700_c0_g1_i4,blat.proc3829875.chain_962,blat.proc3829875.chain_963	5
scaffold_19	skipped_exon	12079113	12079560	-	asmbl_21661	none	STRG.22521.2	1	STRG.22521.1,Trinity_GG_29514_c0_g1_i1,blat.proc3829897.chain_3153	3
scaffold_23	spliced_intron	10894395	10894488	+	asmbl_31179	none	blat.proc3829883.chain_3138	1	Trinity_GG_14496_c0_g1_i2,blat.proc3829883.chain_3139	2
scaffold_24	ends_in_intron	3881411	3881411	-	asmbl_32846	none	Trinity_GG_31857_c0_g1_i1,blat.proc3829899.chain_3618	2	STRG.26551.1	1
scaffold_13	skipped_exon	11376844	11378131	-	asmbl_10044	none	STRG.16287.8,Trinity_GG_26140_c0_g1_i6,blat.proc3829895.chain_1031	3	STRG.16287.1,STRG.16287.2,STRG.16287.3,STRG.16287.4,STRG.16287.5,STRG.16287.6,Trinity_GG_26140_c0_g1_i1,Trinity_GG_26140_c0_g1_i11,Trinity_GG_26140_c0_g1_i2,Trinity_GG_26140_c0_g1_i3,Trinity_GG_26140_c0_g1_i4,Trinity_GG_26140_c0_g1_i5,Trinity_GG_26140_c0_g1_i8,Trinity_GG_26140_c0_g1_i9,blat.proc3829895.chain_1024,blat.proc3829895.chain_1026,blat.proc3829895.chain_1027,blat.proc3829895.chain_1028,blat.proc3829895.chain_1029,blat.proc3829895.chain_1032,blat.proc3829895.chain_1033,blat.proc3829895.chain_1034	22
scaffold_27	spliced_intron	5049880	5050708	-	asmbl_36937	none	STRG.28917.4	1	STRG.28917.1,STRG.28917.5,Trinity_GG_33220_c0_g1_i9,blat.proc3829901.chain_2107	4
scaffold_11	alternate_exon	6763611	6766974	-	asmbl_6719	none	STRG.13704.1,blat.proc3829893.chain_2154	2	STRG.13704.2,blat.proc3829893.chain_2155	2
scaffold_13	skipped_exon	2340633	2341002	+	asmbl_10575,asmbl_10576,asmbl_10578,asmbl_10579,asmbl_10580,asmbl_10581,asmbl_10582,asmbl_10583,asmbl_10584,asmbl_10585,asmbl_10588,asmbl_10589,asmbl_10590	none	STRG.15543.3,STRG.15543.4,STRG.15543.6,STRG.15543.7,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_156,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161,blat.proc3829879.chain_162	13	STRG.15543.9	1
scaffold_15	starts_in_intron	2896785	2896785	-	asmbl_15071	none	STRG.18064.3	1	STRG.18064.2	1
scaffold_18	alt_donor	6901687	6901688	+	asmbl_20721	none	Trinity_GG_11804_c0_g1_i2,blat.proc3829881.chain_2344	2	STRG.21380.1,blat.proc3829881.chain_2343	2
scaffold_10	alt_acceptor	7672815	7672816	+	asmbl_4574	none	STRG.12547.4,Trinity_GG_6909_c0_g1_i1,blat.proc3829877.chain_1107	3	STRG.12547.3	1
scaffold_12	alt_donor	13167440	13167441	-	asmbl_8057	none	STRG.15188.1	1	STRG.15188.2	1
scaffold_5	alt_acceptor	7029548	7029549	+	asmbl_44135,asmbl_44138,asmbl_44140	none	STRG.6108.1,STRG.6108.4,blat.proc3829873.chain_2262	3	STRG.6108.2,STRG.6108.3	2
scaffold_21	starts_in_intron	7494898	7494898	-	asmbl_27846	none	blat.proc3829899.chain_1287	1	STRG.24266.1,STRG.24266.2,blat.proc3829899.chain_1285,blat.proc3829899.chain_1286	4
scaffold_21	spliced_intron	6490693	6490848	+	asmbl_28670,asmbl_28671,asmbl_28673	none	STRG.24157.1,STRG.24157.2,STRG.24157.3,blat.proc3829883.chain_1311,blat.proc3829883.chain_1313	5	blat.proc3829883.chain_1312,blat.proc3829883.chain_1314	2
scaffold_11	retained_intron	8723372	8723845	+	asmbl_5791,asmbl_5792	none	STRG.13889.3,STRG.13889.4,Trinity_GG_7670_c0_g1_i3,Trinity_GG_7670_c0_g1_i5,blat.proc3829877.chain_2402,blat.proc3829877.chain_2403	6	STRG.13889.1,STRG.13889.2,Trinity_GG_7670_c0_g1_i2,blat.proc3829877.chain_2404	4
scaffold_18	retained_intron	1904443	1905350	-	asmbl_19688,asmbl_19689,asmbl_19694	none	STRG.21072.10,STRG.21072.3,Trinity_GG_28789_c2_g1_i1,blat.proc3829897.chain_1906	4	STRG.21072.2,STRG.21072.4,STRG.21072.9,Trinity_GG_28789_c0_g2_i1,blat.proc3829897.chain_1890,blat.proc3829897.chain_1892,blat.proc3829897.chain_1898,blat.proc3829897.chain_1902,blat.proc3829897.chain_1904	9
scaffold_9	retained_intron	16664696	16665148	-	asmbl_55572	none	blat.proc3829893.chain_190	1	STRG.11800.1,blat.proc3829893.chain_191	2
scaffold_8	alt_acceptor	17815244	17815245	+	asmbl_52498,asmbl_52499,asmbl_52505	none	STRG.10687.1,STRG.10687.2,Trinity_GG_5905_c0_g1_i4,Trinity_GG_5905_c0_g1_i7,blat.proc3829875.chain_3120,blat.proc3829875.chain_3121,blat.proc3829875.chain_3123	7	STRG.10687.4,blat.proc3829875.chain_3125	2
scaffold_19	alt_donor	13035678	13035679	-	asmbl_21803	none	STRG.22614.3,blat.proc3829897.chain_3381	2	STRG.22614.1,blat.proc3829897.chain_3380	2
scaffold_5	retained_exon	17976420	17976597	+	asmbl_44858	none	STRG.6933.1,blat.proc3829873.chain_3039	2	blat.proc3829873.chain_3038	1
scaffold_8	spliced_intron	16392727	16393145	-	asmbl_53389,asmbl_53390,asmbl_53391,asmbl_53394,asmbl_53397,asmbl_53399	none	STRG.10619.1,STRG.10619.2,Trinity_GG_22871_c0_g1_i9,blat.proc3829891.chain_2683,blat.proc3829891.chain_2686,blat.proc3829891.chain_2687,blat.proc3829891.chain_2688,blat.proc3829891.chain_2689,blat.proc3829891.chain_2690	9	blat.proc3829891.chain_2684,blat.proc3829891.chain_2685,blat.proc3829891.chain_2691	3
scaffold_19	retained_intron	7702234	7702855	+	asmbl_22296	none	blat.proc3829881.chain_3150	1	STRG.22243.1,STRG.22243.2,blat.proc3829881.chain_3149,blat.proc3829881.chain_3151	4
scaffold_20	alternate_exon	1568918	1569256	-	asmbl_26514	none	STRG.22870.1,blat.proc3829897.chain_3648	2	STRG.22870.3,blat.proc3829897.chain_3649	2
scaffold_13	spliced_intron	7507453	7507966	-	asmbl_9844,asmbl_9845,asmbl_9846,asmbl_9850	none	STRG.16034.1,STRG.16034.5,Trinity_GG_26030_c0_g1_i10,Trinity_GG_26030_c0_g1_i9,blat.proc3829895.chain_816,blat.proc3829895.chain_820,blat.proc3829895.chain_822	7	STRG.16034.2,blat.proc3829895.chain_813	2
scaffold_25	retained_intron	6303553	6303774	+	asmbl_33606,asmbl_33611,asmbl_33612	none	blat.proc3829885.chain_467,blat.proc3829885.chain_469,blat.proc3829885.chain_470,blat.proc3829885.chain_473	4	STRG.27516.1,blat.proc3829885.chain_464,blat.proc3829885.chain_465,blat.proc3829885.chain_471,blat.proc3829885.chain_472,blat.proc3829885.chain_474	6
scaffold_4	spliced_intron	9344094	9344316	-	asmbl_41546,asmbl_41549	none	STRG.4740.1,blat.proc3829889.chain_861,blat.proc3829889.chain_863	3	blat.proc3829889.chain_860,blat.proc3829889.chain_862	2
scaffold_19	retained_intron	10303465	10303671	+	asmbl_22450,asmbl_22451	none	STRG.22402.2,blat.proc3829881.chain_3353	2	STRG.22402.1,blat.proc3829881.chain_3351	2
scaffold_5	alt_acceptor	13112654	13112655	-	asmbl_45895,asmbl_45896	none	STRG.6540.1,STRG.6540.2,blat.proc3829889.chain_2597	3	blat.proc3829889.chain_2598	1
scaffold_7	skipped_exon	1235897	1237961	+	asmbl_50485	none	STRG.8627.8	1	Trinity_GG_4740_c0_g1_i10,Trinity_GG_4740_c0_g1_i20,Trinity_GG_4740_c1_g1_i2,blat.proc3829875.chain_1050,blat.proc3829875.chain_1053	5
scaffold_18	alt_acceptor	180031	180032	+	asmbl_20295	none	STRG.20962.4,blat.proc3829881.chain_1819	2	STRG.20962.1,blat.proc3829881.chain_1817,blat.proc3829881.chain_1820	3
scaffold_13	retained_intron	1238835	1239623	+	asmbl_10515,asmbl_10516	none	STRG.15478.5,Trinity_GG_8526_c0_g1_i1,Trinity_GG_8526_c0_g2_i8,Trinity_GG_8526_c2_g1_i1,blat.proc3829879.chain_203,blat.proc3829879.chain_206,blat.proc3829879.chain_212	7	STRG.15478.1,STRG.15478.2,STRG.15478.4,STRG.15478.6,STRG.15478.7,Trinity_GG_8526_c0_g2_i3,blat.proc3829879.chain_204,blat.proc3829879.chain_205,blat.proc3829879.chain_207,blat.proc3829879.chain_208,blat.proc3829879.chain_209	11
scaffold_19	retained_intron	5155129	5155211	+	asmbl_22156,asmbl_22157,asmbl_22160	none	STRG.22072.1,STRG.22072.2,STRG.22072.4,blat.proc3829881.chain_3011,blat.proc3829881.chain_3013	5	STRG.22072.3,blat.proc3829881.chain_3012,blat.proc3829881.chain_3014	3
scaffold_1	alt_acceptor	12108820	12108821	+	asmbl_2158	none	Trinity_GG_480_c0_g1_i1,blat.proc3829871.chain_850,blat.proc3829871.chain_851	3	STRG.824.2,blat.proc3829871.chain_847	2
scaffold_9	alt_acceptor	16738922	16738923	-	asmbl_55583,asmbl_55584	none	STRG.11811.1,STRG.11811.2,Trinity_GG_23557_c0_g1_i2,Trinity_GG_23557_c0_g1_i6,blat.proc3829893.chain_219,blat.proc3829893.chain_220	6	STRG.11811.3	1
scaffold_12	spliced_intron	7773480	7773656	+	asmbl_8759	none	STRG.14842.2,blat.proc3829877.chain_3351	2	STRG.14842.1,blat.proc3829877.chain_3349	2
scaffold_25	alternate_exon	6839453	6839504	-	asmbl_34347	none	STRG.27529.2,Trinity_GG_32446_c0_g1_i1,blat.proc3829901.chain_858	3	STRG.27529.1,Trinity_GG_32446_c0_g1_i2,blat.proc3829901.chain_857	3
scaffold_24	retained_exon	2430533	2430685	+	asmbl_32105	none	STRG.26445.1,blat.proc3829883.chain_3335	2	STRG.26445.2,blat.proc3829883.chain_3333	2
scaffold_5	retained_exon	2166760	2166978	-	asmbl_45265	none	STRG.5744.2	1	STRG.5744.1,blat.proc3829889.chain_1867	2
scaffold_12	alt_donor	6423301	6423302	-	asmbl_7668,asmbl_7669	none	STRG.14731.3,STRG.14731.4	2	STRG.14731.1,STRG.14731.2,blat.proc3829893.chain_3149,blat.proc3829893.chain_3150,blat.proc3829893.chain_3151	5
scaffold_4	alt_acceptor	7048448	7048449	+	asmbl_42787	none	STRG.4541.1,blat.proc3829873.chain_917	2	STRG.4541.2	1
scaffold_20	retained_intron	11678784	11679395	-	asmbl_27106,asmbl_27108	none	STRG.23659.2,blat.proc3829899.chain_656,blat.proc3829899.chain_659	3	STRG.23659.1,blat.proc3829899.chain_657	2
scaffold_6	alternate_exon	16606100	16606264	+	asmbl_47644	none	STRG.8378.2	1	STRG.8378.3	1
scaffold_4	alternate_exon	3425978	3426021	-	asmbl_41182	none	STRG.4271.2	1	STRG.4271.1,blat.proc3829889.chain_395	2
scaffold_15	alt_acceptor	9665936	9665937	-	asmbl_15416	none	STRG.18467.2	1	STRG.18467.1,STRG.18467.3,blat.proc3829895.chain_3195	3
scaffold_17	alt_acceptor	2553422	2553423	-	asmbl_18808	none	blat.proc3829897.chain_915	1	STRG.20036.1,blat.proc3829897.chain_914	2
scaffold_6	ends_in_intron	16603828	16603828	+	asmbl_47643	none	blat.proc3829875.chain_760	1	STRG.8378.1,STRG.8378.2,STRG.8378.3,blat.proc3829875.chain_759	4
scaffold_1	ends_in_intron	11454250	11454250	-	asmbl_629	none	Trinity_GG_17417_c0_g2_i1,blat.proc3829887.chain_653	2	STRG.757.1,blat.proc3829887.chain_651	2
scaffold_19	alt_acceptor	5457763	5457764	-	asmbl_21371	none	STRG.22096.2	1	STRG.22096.1,blat.proc3829897.chain_2868,blat.proc3829897.chain_2870	3
scaffold_20	ends_in_intron	10661580	10661580	+	asmbl_26130	none	STRG.23585.1,Trinity_GG_12978_c0_g1_i3,blat.proc3829883.chain_587	3	STRG.23585.2,Trinity_GG_12978_c0_g1_i1,blat.proc3829883.chain_588	3
scaffold_22	alternate_exon	10678069	10682197	-	asmbl_30385	none	STRG.25391.1,blat.proc3829899.chain_2463	2	STRG.25391.3	1
scaffold_26	alt_acceptor	2241305	2241306	-	asmbl_34717	none	STRG.27938.2,blat.proc3829901.chain_1175	2	STRG.27938.1,blat.proc3829901.chain_1174	2
scaffold_25	alt_acceptor	9046624	9046625	-	asmbl_34453	none	blat.proc3829901.chain_990	1	STRG.27702.1,STRG.27702.3,blat.proc3829901.chain_982,blat.proc3829901.chain_985,blat.proc3829901.chain_986,blat.proc3829901.chain_988	6
scaffold_26	retained_exon	9840738	9841125	-	asmbl_35067,asmbl_35069	none	STRG.28525.2,Trinity_GG_32930_c0_g1_i2,blat.proc3829901.chain_1621	3	STRG.28525.1,Trinity_GG_32930_c0_g1_i1,blat.proc3829901.chain_1622	3
scaffold_23	ends_in_intron	823614	823614	-	asmbl_31332	none	blat.proc3829899.chain_2641	1	STRG.25553.1	1
scaffold_28	skipped_exon	6546896	6548299	-	asmbl_37679	none	STRG.29730.4	1	STRG.29730.1,STRG.29730.2,STRG.29730.3	3
scaffold_2	spliced_intron	13397950	13398180	+	asmbl_24874,asmbl_24876	none	STRG.2357.2,blat.proc3829871.chain_2405,blat.proc3829871.chain_2407	3	STRG.2357.1,Trinity_GG_1292_c0_g1_i3,blat.proc3829871.chain_2408,blat.proc3829871.chain_2410	4
scaffold_5	starts_in_intron	7744870	7744870	-	asmbl_45575	none	blat.proc3829889.chain_2236	1	STRG.6147.1,blat.proc3829889.chain_2237	2
scaffold_15	ends_in_intron	9872802	9872802	+	asmbl_14372	none	Trinity_GG_10120_c4_g1_i1,blat.proc3829879.chain_3069	2	STRG.18515.1,blat.proc3829879.chain_3062,blat.proc3829879.chain_3065	3
scaffold_21	alt_acceptor	4126171	4126172	+	asmbl_28531	none	STRG.23976.2	1	STRG.23976.1	1
scaffold_8	alt_acceptor	18575241	18575242	-	asmbl_53568,asmbl_53569	none	STRG.10747.1,STRG.10747.2,Trinity_GG_22963_c0_g1_i1,Trinity_GG_22963_c0_g1_i4,blat.proc3829891.chain_2879,blat.proc3829891.chain_2880,blat.proc3829891.chain_2881	7	STRG.10747.3	1
scaffold_17	retained_exon	2354832	2355038	+	asmbl_17767	none	STRG.20017.6	1	STRG.20017.5,STRG.20017.7	2
scaffold_18	starts_in_intron	371700	371700	-	asmbl_19612	none	blat.proc3829897.chain_1877	1	STRG.20979.1,blat.proc3829897.chain_1875,blat.proc3829897.chain_1876,blat.proc3829897.chain_1878,blat.proc3829897.chain_1879	5
scaffold_1	spliced_intron	12410452	12410980	+	asmbl_2195	none	STRG.853.1,Trinity_GG_524_c0_g1_i2,blat.proc3829871.chain_943	3	Trinity_GG_524_c0_g1_i1,blat.proc3829871.chain_942	2
scaffold_6	skipped_exon	13908669	13909022	-	asmbl_48891	none	STRG.8134.2	1	STRG.8134.1,blat.proc3829891.chain_364	2
scaffold_3	alt_acceptor	13895689	13895690	+	asmbl_40428	none	STRG.3737.2	1	STRG.3737.1,blat.proc3829873.chain_143,blat.proc3829873.chain_144,blat.proc3829873.chain_145	4
scaffold_17	alt_donor	7969525	7969526	-	asmbl_19107,asmbl_19108	none	STRG.20404.2,STRG.20404.3	2	STRG.20404.1,blat.proc3829897.chain_1396	2
scaffold_15	starts_in_intron	11727971	11727971	-	asmbl_15545	none	STRG.18620.3	1	STRG.18620.1,STRG.18620.2	2
scaffold_1	spliced_intron	12745383	12745532	-	asmbl_757	none	STRG.892.4,blat.proc3829887.chain_755	2	STRG.892.2,STRG.892.3,blat.proc3829887.chain_756	3
scaffold_18	retained_intron	1434071	1434201	+	asmbl_20378	none	Trinity_GG_11530_c0_g1_i1,blat.proc3829881.chain_1810	2	STRG.21021.2,Trinity_GG_11530_c0_g1_i2,blat.proc3829881.chain_1809	3
scaffold_13	alt_donor	8169932	8169933	-	asmbl_9905	none	STRG.16091.1,Trinity_GG_26048_c0_g1_i1,blat.proc3829895.chain_865	3	STRG.16091.2	1
scaffold_13	spliced_intron	16437382	16437484	+	asmbl_11558	none	blat.proc3829879.chain_1410	1	Trinity_GG_9187_c0_g1_i5,blat.proc3829879.chain_1408	2
scaffold_20	skipped_exon	6132921	6134448	-	asmbl_26735	none	STRG.23206.2,blat.proc3829899.chain_166	2	STRG.23206.1,blat.proc3829899.chain_167	2
scaffold_7	retained_exon	5916586	5916761	-	asmbl_49713,asmbl_49717	none	STRG.8887.3,blat.proc3829891.chain_1163,blat.proc3829891.chain_1164	3	STRG.8887.2,blat.proc3829891.chain_1167,blat.proc3829891.chain_1168	3
scaffold_18	retained_exon	3917647	3918460	-	asmbl_19819	none	blat.proc3829897.chain_2089	1	STRG.21192.2	1
scaffold_3	alternate_exon	17116931	17116948	+	asmbl_40608	none	blat.proc3829873.chain_318	1	STRG.3957.7	1
scaffold_11	alt_donor	8102784	8102785	+	asmbl_5693,asmbl_5694,asmbl_5696	none	STRG.13811.1,STRG.13811.2,blat.proc3829877.chain_2300,blat.proc3829877.chain_2301,blat.proc3829877.chain_2303	5	STRG.13811.3,STRG.13811.4	2
scaffold_4	retained_exon	664182	664287	-	asmbl_41082,asmbl_41084,asmbl_41085	none	STRG.4146.1,STRG.4146.2,STRG.4146.4	3	STRG.4146.3	1
scaffold_4	skipped_exon	4096133	4096603	+	asmbl_42552	none	blat.proc3829873.chain_634	1	STRG.4313.1,STRG.4313.2,STRG.4313.3,STRG.4313.4,blat.proc3829873.chain_631,blat.proc3829873.chain_632,blat.proc3829873.chain_635,blat.proc3829873.chain_636	8
scaffold_2	retained_intron	17932892	17932980	-	asmbl_23774	none	STRG.2682.1,blat.proc3829887.chain_2512	2	STRG.2682.2	1
scaffold_13	retained_intron	7934786	7934861	-	asmbl_9876,asmbl_9877	none	STRG.16055.3,blat.proc3829895.chain_799,blat.proc3829895.chain_803	3	STRG.16055.1,STRG.16055.2,blat.proc3829895.chain_798,blat.proc3829895.chain_800	4
scaffold_21	spliced_intron	5454653	5455337	+	asmbl_28585,asmbl_28590	none	STRG.24067.1,Trinity_GG_13358_c1_g2_i1,blat.proc3829883.chain_1252,blat.proc3829883.chain_1255	4	Trinity_GG_13358_c1_g1_i2,blat.proc3829883.chain_1253	2
scaffold_16	alt_donor	6534005	6534006	+	asmbl_17106	none	Trinity_GG_10611_c0_g1_i1,blat.proc3829881.chain_251	2	STRG.19359.1,STRG.19359.2,Trinity_GG_10611_c0_g1_i3,Trinity_GG_10611_c0_g1_i4,blat.proc3829881.chain_250,blat.proc3829881.chain_252	6
scaffold_500	spliced_intron	2115	2216	+	asmbl_46443,asmbl_46446,asmbl_46450	none	STRG.30347.2,STRG.30347.4,blat.proc3829885.chain_3357,blat.proc3829885.chain_3358	4	STRG.30347.1,STRG.30347.3,Trinity_GG_16793_c0_g1_i10,blat.proc3829885.chain_3361,blat.proc3829885.chain_3362,blat.proc3829885.chain_3363	6
scaffold_6	retained_intron	12087982	12088116	-	asmbl_48728,asmbl_48731	none	STRG.7976.1,Trinity_GG_21507_c0_g1_i1,blat.proc3829891.chain_193	3	STRG.7976.2,blat.proc3829891.chain_192	2
scaffold_5	retained_intron	13022943	13023169	+	asmbl_44512	none	STRG.6522.2,blat.proc3829873.chain_2617	2	STRG.6522.1,blat.proc3829873.chain_2618	2
scaffold_13	retained_exon	16151466	16151528	-	asmbl_10239	none	STRG.16644.2	1	STRG.16644.3,STRG.16644.4	2
scaffold_23	alt_acceptor	4493407	4493408	+	asmbl_30817	none	STRG.25841.2	1	STRG.25841.1,blat.proc3829883.chain_2709	2
scaffold_8	alt_donor	12717298	12717299	+	asmbl_52331	none	STRG.10440.1,blat.proc3829875.chain_2922	2	STRG.10440.2,blat.proc3829875.chain_2923	2
scaffold_28	starts_in_intron	7531846	7531846	+	asmbl_38387	none	Trinity_GG_16495_c0_g1_i3	1	STRG.29810.1,blat.proc3829885.chain_2865,blat.proc3829885.chain_2866	3
scaffold_9	starts_in_intron	4902780	4902780	+	asmbl_53951	none	Trinity_GG_6170_c2_g1_i1,blat.proc3829875.chain_3547	2	STRG.11054.1,STRG.11054.2,blat.proc3829875.chain_3544	3
scaffold_23	alt_acceptor	5563909	5563910	+	asmbl_30872	none	STRG.25907.2	1	STRG.25907.1,blat.proc3829883.chain_2787	2
scaffold_23	alt_acceptor	9956723	9956724	-	asmbl_31830	none	STRG.26184.3	1	STRG.26184.1,STRG.26184.2,blat.proc3829899.chain_3241,blat.proc3829899.chain_3243	4
scaffold_5	retained_intron	1249035	1249146	-	asmbl_45236	none	Trinity_GG_20219_c0_g1_i7,blat.proc3829889.chain_1779	2	STRG.5683.1,blat.proc3829889.chain_1782,blat.proc3829889.chain_1783,blat.proc3829889.chain_1784	4
scaffold_8	starts_in_intron	9468091	9468091	-	asmbl_53031,asmbl_53033	none	blat.proc3829891.chain_2401,blat.proc3829891.chain_2403	2	STRG.10197.1,blat.proc3829891.chain_2400,blat.proc3829891.chain_2405,blat.proc3829891.chain_2406,blat.proc3829891.chain_2407,blat.proc3829891.chain_2408	6
scaffold_28	skipped_exon	2641399	2643017	+	asmbl_38087,asmbl_38088	none	STRG.29420.1,STRG.29420.2,Trinity_GG_16327_c0_g1_i2,blat.proc3829885.chain_2549,blat.proc3829885.chain_2551	5	STRG.29420.3,Trinity_GG_16327_c0_g1_i3,blat.proc3829885.chain_2550	3
scaffold_5	ends_in_intron	18263021	18263021	+	asmbl_44894	none	Trinity_GG_3828_c0_g2_i1,blat.proc3829873.chain_3110	2	STRG.6959.2,blat.proc3829873.chain_3103	2
scaffold_13	skipped_exon	4457825	4458799	+	asmbl_10776,asmbl_10778,asmbl_10779,asmbl_10780,asmbl_10781	none	STRG.15755.3,STRG.15755.4,Trinity_GG_8663_c0_g1_i7,blat.proc3829879.chain_448,blat.proc3829879.chain_449,blat.proc3829879.chain_453	6	STRG.15755.1,Trinity_GG_8663_c0_g1_i6,blat.proc3829879.chain_451,blat.proc3829879.chain_452	4
scaffold_28	skipped_exon	7880365	7880912	-	asmbl_37756	none	STRG.29846.1,blat.proc3829901.chain_2977	2	blat.proc3829901.chain_2975,blat.proc3829901.chain_2978	2
scaffold_8	alternate_exon	11635057	11635243	-	asmbl_53148	none	STRG.10364.2,blat.proc3829891.chain_2494	2	STRG.10364.1,STRG.10364.3,blat.proc3829891.chain_2493	3
scaffold_16	ends_in_intron	6232200	6232200	-	asmbl_16332	none	blat.proc3829897.chain_385	1	STRG.19353.2	1
scaffold_5	skipped_exon	11638405	11639829	+	asmbl_44425	none	STRG.6414.1,Trinity_GG_3493_c0_g1_i3,blat.proc3829873.chain_2556	3	STRG.6414.2,STRG.6414.3,Trinity_GG_3493_c0_g1_i1,Trinity_GG_3493_c0_g1_i2,blat.proc3829873.chain_2554,blat.proc3829873.chain_2555	6
scaffold_3	skipped_exon	935338	937335	-	asmbl_38643	none	blat.proc3829887.chain_2736	1	STRG.2915.1,blat.proc3829887.chain_2737	2
scaffold_11	retained_intron	3358702	3358797	+	asmbl_5384	none	blat.proc3829877.chain_1938	1	STRG.13455.1,blat.proc3829877.chain_1937	2
scaffold_16	retained_intron	7216868	7217206	-	asmbl_16343,asmbl_16344,asmbl_16345,asmbl_16346,asmbl_16347	none	STRG.19382.1,STRG.19382.3,STRG.19382.4,STRG.19382.6,Trinity_GG_27897_c0_g1_i1,Trinity_GG_27897_c0_g1_i20,blat.proc3829897.chain_409,blat.proc3829897.chain_414	8	STRG.19382.2,STRG.19382.5	2
scaffold_7	alt_donor	12346465	12346466	+	asmbl_51124	none	STRG.9317.1,blat.proc3829875.chain_1785	2	STRG.9317.2	1
scaffold_21	starts_in_intron	7315772	7315772	+	asmbl_28740	none	STRG.24238.2	1	STRG.24238.1,blat.proc3829883.chain_1310	2
scaffold_1	alt_acceptor	12050647	12050648	-	asmbl_689,asmbl_691	none	STRG.819.2,STRG.819.3	2	STRG.819.1,STRG.819.4	2
scaffold_26	spliced_intron	5562155	5562324	+	asmbl_35548	none	STRG.28248.4	1	STRG.28248.3	1
scaffold_15	spliced_intron	6793556	6793655	-	asmbl_15272	none	STRG.18288.2,blat.proc3829895.chain_3044	2	STRG.18288.1,blat.proc3829895.chain_3046	2
scaffold_19	alt_donor	12392955	12392956	-	asmbl_21691,asmbl_21692,asmbl_21693,asmbl_21694	none	STRG.22557.1,STRG.22557.2,blat.proc3829897.chain_3269,blat.proc3829897.chain_3270,blat.proc3829897.chain_3271,blat.proc3829897.chain_3272	6	STRG.22557.3,blat.proc3829897.chain_3268	2
scaffold_23	alt_donor	7281807	7281808	-	asmbl_31744	none	STRG.26034.2	1	STRG.26034.3	1
scaffold_8	alt_donor	17494980	17494981	+	asmbl_52471,asmbl_52476,asmbl_52479,asmbl_52480	none	STRG.10668.1,STRG.10668.4,blat.proc3829875.chain_3152,blat.proc3829875.chain_3153,blat.proc3829875.chain_3157	5	STRG.10668.3,blat.proc3829875.chain_3156,blat.proc3829875.chain_3158	3
scaffold_18	ends_in_intron	2050878	2050878	-	asmbl_19729	none	Trinity_GG_28833_c0_g1_i2	1	STRG.21084.1,Trinity_GG_28833_c0_g1_i1,blat.proc3829897.chain_1993	3
scaffold_26	spliced_intron	5487654	5488597	+	asmbl_35526,asmbl_35528	none	STRG.28241.2,STRG.28241.4,Trinity_GG_15567_c0_g1_i7,blat.proc3829885.chain_1185	4	STRG.28241.1,Trinity_GG_15567_c0_g1_i5,Trinity_GG_15567_c0_g1_i8,blat.proc3829885.chain_1186,blat.proc3829885.chain_1187	5
scaffold_10	retained_intron	1076179	1076832	-	asmbl_2959,asmbl_2960	none	STRG.11988.1,STRG.11988.2	2	STRG.11988.3,Trinity_GG_23654_c0_g1_i3,blat.proc3829893.chain_386	3
scaffold_25	alt_acceptor	6311971	6311972	-	asmbl_34324	none	STRG.27517.1	1	STRG.27517.2,blat.proc3829901.chain_827	2
scaffold_25	alt_acceptor	9120067	9120068	+	asmbl_33776	none	STRG.27709.3	1	STRG.27709.2	1
scaffold_9	spliced_intron	13323052	13323206	-	asmbl_55403	none	STRG.11623.2,blat.proc3829891.chain_3742	2	STRG.11623.1,Trinity_GG_23424_c0_g1_i2,blat.proc3829891.chain_3741	3
scaffold_11	starts_in_intron	3853526	3853526	+	asmbl_5425	none	Trinity_GG_7403_c0_g1_i1,blat.proc3829877.chain_1958	2	STRG.13490.1,Trinity_GG_7403_c0_g1_i3,blat.proc3829877.chain_1956	3
scaffold_18	starts_in_intron	220343	220343	+	asmbl_20308	none	Trinity_GG_11540_c0_g1_i2,blat.proc3829881.chain_1831	2	STRG.20963.1,blat.proc3829881.chain_1829,blat.proc3829881.chain_1830	3
scaffold_18	alt_donor	3217943	3217944	-	asmbl_19790	none	STRG.21148.1,Trinity_GG_28812_c0_g1_i1,blat.proc3829897.chain_1960	3	STRG.21148.2,Trinity_GG_28812_c0_g1_i2,blat.proc3829897.chain_1961	3
scaffold_25	alt_acceptor	7322411	7322412	-	asmbl_34368	none	STRG.27566.1	1	STRG.27566.2,STRG.27566.4	2
scaffold_10	retained_intron	714718	715006	-	asmbl_2905,asmbl_2908,asmbl_2909	none	Trinity_GG_23680_c0_g1_i4,Trinity_GG_23680_c0_g1_i6,blat.proc3829893.chain_435,blat.proc3829893.chain_436,blat.proc3829893.chain_438	5	STRG.11948.1,STRG.11948.2,Trinity_GG_23680_c0_g1_i7,blat.proc3829893.chain_434	4
scaffold_23	spliced_intron	6632390	6632499	+	asmbl_30928,asmbl_30931,asmbl_30932,asmbl_30933,asmbl_30934	none	STRG.25985.1,STRG.25985.2,blat.proc3829883.chain_2814,blat.proc3829883.chain_2815,blat.proc3829883.chain_2816,blat.proc3829883.chain_2817	6	blat.proc3829883.chain_2813	1
scaffold_1	retained_intron	13537007	13537217	-	asmbl_830	none	blat.proc3829887.chain_775	1	STRG.966.1,Trinity_GG_17468_c0_g1_i1,Trinity_GG_17468_c0_g1_i5,blat.proc3829887.chain_771,blat.proc3829887.chain_772,blat.proc3829887.chain_773,blat.proc3829887.chain_774	7
scaffold_22	retained_intron	7787082	7787160	-	asmbl_30189	none	STRG.25107.2,blat.proc3829899.chain_2186	2	STRG.25107.1,blat.proc3829899.chain_2187	2
scaffold_27	retained_intron	1638883	1639004	-	asmbl_36726	none	blat.proc3829901.chain_1832	1	STRG.28635.1,blat.proc3829901.chain_1833	2
scaffold_6	spliced_intron	5644143	5644250	-	asmbl_48367	none	STRG.7523.1,blat.proc3829889.chain_3605,blat.proc3829889.chain_3606,blat.proc3829889.chain_3607	4	Trinity_GG_21287_c0_g1_i2,blat.proc3829889.chain_3608	2
scaffold_13	skipped_exon	6803745	6804588	+	asmbl_10962,asmbl_10964	none	STRG.15957.2,blat.proc3829879.chain_658	2	STRG.15957.1,blat.proc3829879.chain_659,blat.proc3829879.chain_660	3
scaffold_19	starts_in_intron	11076164	11076164	+	asmbl_22470	none	Trinity_GG_12381_c0_g1_i1,blat.proc3829881.chain_3330	2	STRG.22428.1	1
scaffold_17	skipped_exon	5998506	6000825	+	asmbl_17965,asmbl_17966	none	STRG.20273.2,STRG.20273.4	2	STRG.20273.5,Trinity_GG_11119_c1_g1_i2,blat.proc3829881.chain_1089,blat.proc3829881.chain_1090	4
scaffold_8	alt_donor	18420298	18420299	-	asmbl_53551	none	STRG.10732.1,Trinity_GG_22989_c0_g1_i1,blat.proc3829891.chain_2930	3	STRG.10732.2,Trinity_GG_22989_c0_g1_i3,blat.proc3829891.chain_2932	3
scaffold_27	spliced_intron	381931	382927	-	asmbl_36636,asmbl_36637	none	STRG.28547.4,STRG.28547.5,blat.proc3829901.chain_1684,blat.proc3829901.chain_1685	4	STRG.28547.3,Trinity_GG_32953_c1_g1_i2,blat.proc3829901.chain_1683,blat.proc3829901.chain_1688	4
scaffold_23	spliced_intron	10938115	10938394	-	asmbl_31889,asmbl_31892	none	STRG.26279.1,STRG.26279.2	2	Trinity_GG_31688_c0_g1_i4	1
scaffold_12	starts_in_intron	7963063	7963063	+	asmbl_8765	none	Trinity_GG_8164_c0_g1_i4,blat.proc3829877.chain_3275	2	STRG.14845.1,STRG.14845.2,STRG.14845.3,blat.proc3829877.chain_3276,blat.proc3829877.chain_3277	5
scaffold_12	retained_intron	12018186	12018385	+	asmbl_8938	none	blat.proc3829877.chain_3494	1	STRG.15103.1,STRG.15103.2,Trinity_GG_8284_c0_g1_i2,Trinity_GG_8284_c0_g1_i3,Trinity_GG_8284_c0_g1_i5,Trinity_GG_8284_c0_g1_i7,blat.proc3829877.chain_3492,blat.proc3829877.chain_3493,blat.proc3829877.chain_3495,blat.proc3829877.chain_3496	10
scaffold_2	spliced_intron	14193481	14193569	-	asmbl_23583,asmbl_23585	none	blat.proc3829887.chain_2208,blat.proc3829887.chain_2210	2	STRG.2417.1,STRG.2417.2,blat.proc3829887.chain_2207,blat.proc3829887.chain_2209,blat.proc3829887.chain_2212	5
scaffold_16	alternate_exon	11333899	11335046	+	asmbl_17384	none	STRG.19652.2	1	STRG.19652.4,STRG.19652.5,blat.proc3829881.chain_554,blat.proc3829881.chain_555	4
scaffold_4	alt_acceptor	12531949	12531950	-	asmbl_41661	none	STRG.4887.1,Trinity_GG_19696_c0_g1_i3,blat.proc3829889.chain_881	3	STRG.4887.2	1
scaffold_27	spliced_intron	294852	294971	+	asmbl_35908	none	STRG.28537.2,Trinity_GG_15803_c0_g1_i2,blat.proc3829885.chain_1594	3	STRG.28537.1,Trinity_GG_15803_c0_g1_i1,blat.proc3829885.chain_1593	3
scaffold_21	retained_exon	5519284	5519377	-	asmbl_27687	none	STRG.24069.1,blat.proc3829899.chain_1157	2	blat.proc3829899.chain_1154	1
scaffold_10	alternate_exon	12697331	12697437	-	asmbl_3720	none	STRG.12849.2,blat.proc3829893.chain_1349	2	STRG.12849.1,blat.proc3829893.chain_1348	2
scaffold_11	retained_intron	4756929	4757259	+	asmbl_5481	none	Trinity_GG_7461_c1_g1_i1,blat.proc3829877.chain_2055	2	STRG.13564.1,blat.proc3829877.chain_2053,blat.proc3829877.chain_2054	3
scaffold_12	alt_donor	16338941	16338942	+	asmbl_9126	none	STRG.15376.2,blat.proc3829877.chain_3728	2	STRG.15376.1,blat.proc3829877.chain_3729	2
scaffold_11	retained_intron	15687955	15688379	-	asmbl_7188	none	Trinity_GG_25002_c0_g1_i1,Trinity_GG_25002_c0_g1_i3,blat.proc3829893.chain_2712,blat.proc3829893.chain_2713	4	STRG.14295.1,blat.proc3829893.chain_2714	2
scaffold_11	alt_acceptor	11644951	11644952	+	asmbl_5954	none	STRG.14081.1,blat.proc3829877.chain_2598	2	blat.proc3829877.chain_2597	1
scaffold_25	spliced_intron	6311971	6313061	-	asmbl_34324	none	STRG.27517.1	1	Trinity_GG_32432_c0_g1_i4,blat.proc3829901.chain_826	2
scaffold_2	alternate_exon	14204349	14205039	-	asmbl_23589	none	blat.proc3829887.chain_2298	1	STRG.2411.3,STRG.2411.4,blat.proc3829887.chain_2299	3
scaffold_500	retained_intron	1334	1625	+	asmbl_46445	none	blat.proc3829885.chain_3364	1	STRG.30347.1,STRG.30347.2,STRG.30347.3,STRG.30347.4,blat.proc3829885.chain_3366,blat.proc3829885.chain_3369	6
scaffold_4	starts_in_intron	8251380	8251380	+	asmbl_42876	none	Trinity_GG_2583_c0_g1_i1,blat.proc3829873.chain_1022	2	STRG.4649.1,blat.proc3829873.chain_1021	2
scaffold_10	starts_in_intron	4272792	4272792	-	asmbl_3193	none	blat.proc3829893.chain_636	1	STRG.12256.1,blat.proc3829893.chain_637	2
scaffold_5	starts_in_intron	12396584	12396584	+	asmbl_44471	none	Trinity_GG_3538_c1_g1_i1,blat.proc3829873.chain_2633	2	STRG.6478.1,blat.proc3829873.chain_2632	2
scaffold_14	starts_in_intron	3159070	3159070	+	asmbl_11882	none	Trinity_GG_9302_c0_g1_i11,blat.proc3829879.chain_1627	2	STRG.16893.1,STRG.16893.2,STRG.16893.3,blat.proc3829879.chain_1625,blat.proc3829879.chain_1626,blat.proc3829879.chain_1628,blat.proc3829879.chain_1629,blat.proc3829879.chain_1630,blat.proc3829879.chain_1631,blat.proc3829879.chain_1632,blat.proc3829879.chain_1633,blat.proc3829879.chain_1634,blat.proc3829879.chain_1635,blat.proc3829879.chain_1636,blat.proc3829879.chain_1637,blat.proc3829879.chain_1638,blat.proc3829879.chain_1639,blat.proc3829879.chain_1640	18
scaffold_11	spliced_intron	6251734	6252621	+	asmbl_5584,asmbl_5586,asmbl_5589	none	STRG.13670.2,Trinity_GG_7547_c0_g1_i2,Trinity_GG_7547_c0_g1_i9,blat.proc3829877.chain_2179,blat.proc3829877.chain_2183	5	STRG.13670.3,Trinity_GG_7547_c0_g1_i1,blat.proc3829877.chain_2182	3
scaffold_1	spliced_intron	16800305	16801968	+	asmbl_2488	none	STRG.1179.1,blat.proc3829871.chain_1248	2	Trinity_GG_695_c1_g1_i1,Trinity_GG_695_c1_g1_i3,blat.proc3829871.chain_1247,blat.proc3829871.chain_1249	4
scaffold_28	alt_donor	5014676	5014677	+	asmbl_38257	none	blat.proc3829885.chain_2754	1	STRG.29628.3,Trinity_GG_16433_c0_g2_i4,blat.proc3829885.chain_2755	3
scaffold_2	alt_donor	18610518	18610519	-	asmbl_23819	none	STRG.2736.2	1	STRG.2736.3,Trinity_GG_18522_c0_g1_i2,blat.proc3829887.chain_2559	3
scaffold_5	ends_in_intron	403119	403119	+	asmbl_43756	none	blat.proc3829873.chain_1798	1	STRG.5601.1	1
scaffold_16	retained_intron	11596511	11596915	-	asmbl_16529	none	STRG.19665.1,blat.proc3829897.chain_642,blat.proc3829897.chain_643	3	STRG.19665.2	1
scaffold_22	retained_intron	10005419	10005648	+	asmbl_29626	none	STRG.25327.2,Trinity_GG_14016_c1_g1_i1,blat.proc3829883.chain_2326	3	STRG.25327.1,blat.proc3829883.chain_2325	2
scaffold_1	starts_in_intron	12689100	12689100	-	asmbl_753	none	Trinity_GG_17484_c0_g1_i6,blat.proc3829887.chain_794	2	STRG.891.1,STRG.891.2,STRG.891.3,STRG.891.4,Trinity_GG_17484_c0_g1_i2,blat.proc3829887.chain_796,blat.proc3829887.chain_797	7
scaffold_13	starts_in_intron	2861884	2861884	-	asmbl_9440	none	blat.proc3829895.chain_353	1	STRG.15575.1,blat.proc3829895.chain_351,blat.proc3829895.chain_352	3
scaffold_13	retained_intron	4457825	4458799	+	asmbl_10773	none	STRG.15755.2,Trinity_GG_8663_c0_g2_i2,blat.proc3829879.chain_450,blat.proc3829879.chain_455	4	STRG.15755.3,STRG.15755.4,Trinity_GG_8663_c0_g1_i7,blat.proc3829879.chain_448,blat.proc3829879.chain_449,blat.proc3829879.chain_453	6
scaffold_17	alt_donor	4186959	4186960	-	asmbl_18888	none	STRG.20157.1,blat.proc3829897.chain_1126	2	STRG.20157.3	1
scaffold_25	ends_in_intron	8700347	8700347	-	asmbl_34436	none	STRG.27678.6,blat.proc3829901.chain_959	2	STRG.27678.2,STRG.27678.3,STRG.27678.5,blat.proc3829901.chain_953,blat.proc3829901.chain_954,blat.proc3829901.chain_957,blat.proc3829901.chain_960	7
scaffold_5	retained_intron	2242543	2242602	-	asmbl_45273	none	STRG.5754.1,blat.proc3829889.chain_1835	2	STRG.5754.2	1
scaffold_16	alternate_exon	1476731	1476763	+	asmbl_16865	none	STRG.19078.2,blat.proc3829879.chain_3687	2	STRG.19078.1,blat.proc3829879.chain_3686	2
scaffold_17	alt_acceptor	11567922	11567923	+	asmbl_18362	none	STRG.20693.2	1	STRG.20693.1	1
scaffold_6	spliced_intron	569633	569861	-	asmbl_47984	none	STRG.7107.1,blat.proc3829889.chain_3091	2	blat.proc3829889.chain_3092	1
scaffold_22	alt_acceptor	7573315	7573316	+	asmbl_29485	none	STRG.25078.2,blat.proc3829883.chain_2144	2	STRG.25078.1,blat.proc3829883.chain_2143	2
scaffold_7	retained_intron	7534643	7534673	-	asmbl_49762	none	Trinity_GG_22104_c0_g1_i1	1	STRG.8996.1	1
scaffold_16	starts_in_intron	8039774	8039774	+	asmbl_17169	none	Trinity_GG_10630_c1_g1_i2,blat.proc3829881.chain_285	2	STRG.19437.1,STRG.19437.2,Trinity_GG_10630_c1_g1_i1,blat.proc3829881.chain_284	4
scaffold_25	alt_donor	7324214	7324215	-	asmbl_34368	none	STRG.27566.1	1	STRG.27566.2,STRG.27566.4,blat.proc3829885.chain_601	3
scaffold_2	spliced_intron	7408928	7409546	-	asmbl_23280	none	STRG.2065.4,blat.proc3829887.chain_1875	2	STRG.2065.1,Trinity_GG_18123_c0_g1_i2,blat.proc3829887.chain_1877,blat.proc3829887.chain_1879	4
scaffold_10	starts_in_intron	1292008	1292008	+	asmbl_4204	none	STRG.12009.3,Trinity_GG_6651_c1_g2_i1,blat.proc3829877.chain_669	3	STRG.12009.1,STRG.12009.2,blat.proc3829877.chain_668	3
scaffold_18	alt_acceptor	3781085	3781086	-	asmbl_19808	none	STRG.21181.2	1	STRG.21181.1,blat.proc3829897.chain_2071	2
scaffold_8	ends_in_intron	12981360	12981360	-	asmbl_53269	none	blat.proc3829891.chain_2612	1	STRG.10477.1,blat.proc3829891.chain_2611	2
scaffold_15	spliced_intron	15501981	15502092	+	asmbl_14751,asmbl_14752,asmbl_14753,asmbl_14754,asmbl_14755,asmbl_14756	none	STRG.18940.1,Trinity_GG_10382_c0_g1_i1,Trinity_GG_10382_c0_g1_i2,Trinity_GG_10382_c0_g1_i3,Trinity_GG_10382_c0_g1_i5,Trinity_GG_10382_c0_g1_i6,blat.proc3829879.chain_3532,blat.proc3829879.chain_3533,blat.proc3829879.chain_3534,blat.proc3829879.chain_3535,blat.proc3829879.chain_3536,blat.proc3829879.chain_3537	12	STRG.18940.2	1
scaffold_6	starts_in_intron	13169421	13169421	-	asmbl_48823,asmbl_48825,asmbl_48827	none	STRG.8067.2,blat.proc3829891.chain_381,blat.proc3829891.chain_384	3	STRG.8067.1,blat.proc3829891.chain_382,blat.proc3829891.chain_383	3
scaffold_16	alt_acceptor	10441847	10441848	+	asmbl_17333	none	STRG.19601.3	1	STRG.19601.1,Trinity_GG_10746_c0_g1_i1,Trinity_GG_10746_c0_g1_i3,blat.proc3829881.chain_486	4
scaffold_13	retained_intron	2637243	2637508	+	asmbl_10616	none	STRG.15549.2,Trinity_GG_8560_c0_g1_i4	2	STRG.15549.1,Trinity_GG_8560_c0_g1_i1,Trinity_GG_8560_c0_g1_i3,blat.proc3829879.chain_272	4
scaffold_4	spliced_intron	4416472	4417029	+	asmbl_42576,asmbl_42588,asmbl_42589,asmbl_42593	none	STRG.4344.4,Trinity_GG_2404_c0_g1_i5,blat.proc3829873.chain_680,blat.proc3829873.chain_696,blat.proc3829873.chain_697	5	Trinity_GG_2404_c0_g1_i10,Trinity_GG_2404_c0_g1_i19,blat.proc3829873.chain_681,blat.proc3829873.chain_685,blat.proc3829873.chain_686,blat.proc3829873.chain_687,blat.proc3829873.chain_689,blat.proc3829873.chain_690,blat.proc3829873.chain_698	9
scaffold_15	skipped_exon	2797848	2798457	+	asmbl_14022,asmbl_14023	none	STRG.18051.2,blat.proc3829879.chain_2697	2	blat.proc3829879.chain_2695	1
scaffold_5	alt_acceptor	15044005	15044006	-	asmbl_46016,asmbl_46017,asmbl_46018	none	STRG.6692.7,STRG.6692.8,Trinity_GG_20768_c0_g2_i1,blat.proc3829889.chain_2744	4	STRG.6692.2,STRG.6692.3,STRG.6692.4,STRG.6692.5,STRG.6692.6,STRG.6692.9	6
scaffold_6	alt_donor	878149	878150	+	asmbl_46638	none	STRG.7151.2	1	STRG.7151.3	1
scaffold_3	retained_intron	5774678	5774814	-	asmbl_38815,asmbl_38816,asmbl_38818	none	STRG.3244.1,STRG.3244.2,STRG.3244.3,blat.proc3829887.chain_2960,blat.proc3829887.chain_2962	5	STRG.3244.4,blat.proc3829887.chain_2961	2
scaffold_10	spliced_intron	8894175	8894277	-	asmbl_3532,asmbl_3533,asmbl_3534,asmbl_3535,asmbl_3536,asmbl_3537,asmbl_3538,asmbl_3539,asmbl_3540	none	STRG.12629.1,blat.proc3829893.chain_1128,blat.proc3829893.chain_1129,blat.proc3829893.chain_1130,blat.proc3829893.chain_1132,blat.proc3829893.chain_1133,blat.proc3829893.chain_1134,blat.proc3829893.chain_1135,blat.proc3829893.chain_1136	9	Trinity_GG_24071_c0_g1_i29,blat.proc3829893.chain_1126	2
scaffold_1	ends_in_intron	6831193	6831193	-	asmbl_397	none	blat.proc3829887.chain_366	1	STRG.478.1,blat.proc3829887.chain_368	2
scaffold_18	retained_exon	9259388	9259473	-	asmbl_20093	none	STRG.21559.1,Trinity_GG_29070_c0_g1_i5,blat.proc3829897.chain_2410	3	STRG.21559.4	1
scaffold_2	spliced_intron	7925080	7925321	-	asmbl_23316,asmbl_23319,asmbl_23320	none	STRG.2092.1,STRG.2092.2,blat.proc3829887.chain_2034,blat.proc3829887.chain_2036	4	blat.proc3829887.chain_2033	1
scaffold_1	alternate_exon	9176683	9176693	-	asmbl_528	none	STRG.606.1,blat.proc3829887.chain_518	2	STRG.606.2	1
scaffold_21	retained_intron	5170787	5170985	-	asmbl_27652	none	blat.proc3829899.chain_1131	1	STRG.24038.1,blat.proc3829899.chain_1128,blat.proc3829899.chain_1129,blat.proc3829899.chain_1132,blat.proc3829899.chain_1134	5
scaffold_13	retained_intron	7109506	7110796	+	asmbl_10997,asmbl_11001	none	STRG.15994.1,Trinity_GG_8796_c0_g1_i5,Trinity_GG_8796_c0_g1_i9,blat.proc3829879.chain_723	4	STRG.15994.3,blat.proc3829879.chain_729	2
scaffold_10	ends_in_intron	14691579	14691579	+	asmbl_4922	none	blat.proc3829877.chain_1539	1	STRG.13008.1,STRG.13008.2,STRG.13008.3,blat.proc3829877.chain_1535,blat.proc3829877.chain_1537	5
scaffold_7	ends_in_intron	8209966	8209966	+	asmbl_50854	none	blat.proc3829875.chain_1411	1	STRG.9044.1,blat.proc3829875.chain_1412	2
scaffold_9	skipped_exon	10916510	10917412	+	asmbl_54294	none	STRG.11397.1	1	STRG.11397.2	1
scaffold_16	alt_donor	1123843	1123844	-	asmbl_16100	none	STRG.19066.1	1	STRG.19066.2,blat.proc3829897.chain_120	2
scaffold_14	retained_exon	11139487	11139590	-	asmbl_13430	none	STRG.17433.1,blat.proc3829895.chain_2149	2	STRG.17433.2,blat.proc3829895.chain_2146	2
scaffold_24	spliced_intron	6225543	6225855	-	asmbl_32930,asmbl_32933,asmbl_32934	none	STRG.26664.1,STRG.26664.3,Trinity_GG_31899_c0_g1_i6,blat.proc3829899.chain_3686,blat.proc3829899.chain_3688	5	STRG.26664.2,blat.proc3829899.chain_3687,blat.proc3829899.chain_3690,blat.proc3829899.chain_3693,blat.proc3829899.chain_3695,blat.proc3829899.chain_3696	6
scaffold_3	alt_acceptor	11980934	11980935	+	asmbl_40338	none	STRG.3621.3	1	STRG.3621.1,STRG.3621.2,Trinity_GG_2035_c0_g1_i1,Trinity_GG_2035_c0_g1_i2,Trinity_GG_2035_c0_g2_i1,blat.proc3829873.chain_20,blat.proc3829873.chain_21,blat.proc3829873.chain_23	8
scaffold_20	alternate_exon	6281542	6281581	+	asmbl_25810	none	STRG.23212.2	1	STRG.23212.1	1
scaffold_6	ends_in_intron	2697873	2697873	-	asmbl_48100	none	STRG.7262.2	1	STRG.7262.1,blat.proc3829889.chain_3258	2
scaffold_1	alt_donor	9254163	9254164	+	asmbl_1962	none	STRG.616.4,Trinity_GG_391_c0_g1_i3,blat.proc3829871.chain_683	3	STRG.616.3,Trinity_GG_391_c0_g1_i1,blat.proc3829871.chain_680	3
scaffold_26	alt_donor	5523847	5523848	+	asmbl_35542	none	STRG.28244.4	1	STRG.28244.1	1
scaffold_3	alt_acceptor	14364969	14364970	-	asmbl_39315	none	STRG.3774.2	1	STRG.3774.1,Trinity_GG_19095_c0_g1_i1,blat.proc3829887.chain_3557	3
scaffold_19	retained_intron	12242887	12242971	+	asmbl_22575	none	Trinity_GG_12467_c0_g1_i6,blat.proc3829881.chain_3478	2	STRG.22541.1,blat.proc3829881.chain_3477,blat.proc3829881.chain_3479	3
scaffold_7	alt_donor	6043338	6043339	-	asmbl_49726	none	STRG.8899.3	1	STRG.8899.2,STRG.8899.4,STRG.8899.5,Trinity_GG_22045_c0_g1_i5,blat.proc3829891.chain_1182	5
scaffold_5	spliced_intron	7708243	7708325	+	asmbl_44163	none	Trinity_GG_3357_c0_g1_i3,blat.proc3829873.chain_2299	2	STRG.6139.1,STRG.6139.2,blat.proc3829873.chain_2297,blat.proc3829873.chain_2298	4
scaffold_2	alt_acceptor	884737	884738	+	asmbl_24142,asmbl_24143	none	blat.proc3829871.chain_1566,blat.proc3829871.chain_1567	2	STRG.1563.3	1
scaffold_23	alternate_exon	9471459	9471524	-	asmbl_31814	none	blat.proc3829899.chain_3236	1	STRG.26148.1,blat.proc3829899.chain_3234	2
scaffold_560	spliced_intron	741	875	-	asmbl_46529	none	STRG.30350.1,blat.proc3829901.chain_3407	2	Trinity_GG_34031_c0_g1_i3,blat.proc3829901.chain_3408	2
scaffold_1	alt_donor	12175362	12175363	+	asmbl_2173,asmbl_2174	none	STRG.846.1,STRG.846.2,blat.proc3829871.chain_923,blat.proc3829871.chain_926	4	STRG.846.3,STRG.846.4,blat.proc3829871.chain_925,blat.proc3829871.chain_927	4
scaffold_15	alternate_exon	15844804	15849094	+	asmbl_14772,asmbl_14773,asmbl_14774,asmbl_14775	none	STRG.18964.1,STRG.18964.2,STRG.18964.3,STRG.18964.4,Trinity_GG_10383_c1_g1_i1,blat.proc3829879.chain_3538,blat.proc3829879.chain_3546	7	STRG.18964.5,STRG.18964.6,Trinity_GG_10383_c0_g1_i3,Trinity_GG_10383_c0_g1_i7,blat.proc3829879.chain_3540,blat.proc3829879.chain_3542	6
scaffold_7	starts_in_intron	2503181	2503181	-	asmbl_49566	none	STRG.8677.2,blat.proc3829891.chain_1017	2	STRG.8677.1	1
scaffold_14	alt_acceptor	202514	202515	-	asmbl_12777,asmbl_12785	none	STRG.16702.4,blat.proc3829895.chain_1408,blat.proc3829895.chain_1409	3	STRG.16702.1,STRG.16702.3,blat.proc3829895.chain_1406	3
scaffold_18	starts_in_intron	5975832	5975832	+	asmbl_20667	none	Trinity_GG_11769_c0_g1_i1,blat.proc3829881.chain_2281	2	STRG.21340.1	1
scaffold_8	ends_in_intron	11256495	11256495	+	asmbl_52197	none	STRG.10327.2,Trinity_GG_5751_c0_g1_i2,blat.proc3829875.chain_2849	3	STRG.10327.1,Trinity_GG_5751_c0_g1_i1,blat.proc3829875.chain_2848	3
scaffold_12	alt_acceptor	15677546	15677547	-	asmbl_8235	none	STRG.15344.3	1	STRG.15344.1,STRG.15344.2,STRG.15344.4,STRG.15344.5,blat.proc3829895.chain_19,blat.proc3829895.chain_20,blat.proc3829895.chain_21,blat.proc3829895.chain_22	8
scaffold_7	retained_exon	1231239	1231310	+	asmbl_50468,asmbl_50470,asmbl_50478,asmbl_50480	none	STRG.8627.2,STRG.8627.3,STRG.8627.5,STRG.8627.6,Trinity_GG_4740_c0_g1_i15,blat.proc3829875.chain_1052	6	Trinity_GG_4740_c0_g1_i16,Trinity_GG_4740_c0_g1_i17,Trinity_GG_4740_c0_g1_i21,blat.proc3829875.chain_1042,blat.proc3829875.chain_1046,blat.proc3829875.chain_1047	6
scaffold_19	alternate_exon	3671441	3672204	-	asmbl_21323,asmbl_21330	none	STRG.22034.1,Trinity_GG_29269_c0_g1_i6,blat.proc3829897.chain_2742,blat.proc3829897.chain_2745	4	STRG.22034.2,Trinity_GG_29269_c0_g1_i5,blat.proc3829897.chain_2739	3
scaffold_12	alt_acceptor	4756154	4756155	-	asmbl_7573	none	STRG.14641.1	1	STRG.14641.2,STRG.14641.3,STRG.14641.4,blat.proc3829893.chain_2975,blat.proc3829893.chain_2976	5
scaffold_7	retained_intron	4545952	4546317	+	asmbl_50628,asmbl_50629	none	blat.proc3829875.chain_1241,blat.proc3829875.chain_1243	2	STRG.8819.1,blat.proc3829875.chain_1242,blat.proc3829875.chain_1244	3
scaffold_15	starts_in_intron	15120028	15120028	-	asmbl_15773	none	blat.proc3829895.chain_3672	1	STRG.18894.1,blat.proc3829895.chain_3671	2
scaffold_14	alt_donor	8756741	8756742	-	asmbl_13325	none	STRG.17300.1,blat.proc3829895.chain_1958	2	STRG.17300.2	1
scaffold_12	alt_acceptor	4352582	4352583	+	asmbl_8567	none	STRG.14601.2	1	STRG.14601.1,blat.proc3829877.chain_3076,blat.proc3829877.chain_3077	3
scaffold_7	starts_in_intron	13199700	13199700	-	asmbl_50111,asmbl_50115	none	STRG.9418.3,blat.proc3829891.chain_1691	2	STRG.9418.1,blat.proc3829891.chain_1692,blat.proc3829891.chain_1694,blat.proc3829891.chain_1695,blat.proc3829891.chain_1697,blat.proc3829891.chain_1698	6
scaffold_15	ends_in_intron	11494482	11494482	-	asmbl_15534	none	Trinity_GG_27474_c0_g1_i3,blat.proc3829895.chain_3385	2	STRG.18603.2	1
scaffold_14	alt_acceptor	2541948	2541949	+	asmbl_11840	none	STRG.16858.1,blat.proc3829879.chain_1598	2	STRG.16858.2	1
scaffold_18	retained_intron	3789471	3789712	-	asmbl_19809,asmbl_19811,asmbl_19813,asmbl_19814,asmbl_19815	none	STRG.21185.1,STRG.21185.3,blat.proc3829897.chain_2078,blat.proc3829897.chain_2079,blat.proc3829897.chain_2080,blat.proc3829897.chain_2084,blat.proc3829897.chain_2085	7	STRG.21185.2,blat.proc3829897.chain_2077,blat.proc3829897.chain_2083	3
scaffold_15	skipped_exon	14633432	14633944	-	asmbl_15751	none	STRG.18867.2,blat.proc3829895.chain_3644	2	STRG.18867.1,STRG.18867.4,blat.proc3829895.chain_3645	3
scaffold_1	ends_in_intron	11542343	11542343	+	asmbl_2103	none	blat.proc3829871.chain_727	1	STRG.760.1,Trinity_GG_419_c0_g1_i1,Trinity_GG_419_c0_g1_i2,blat.proc3829871.chain_729	4
scaffold_9	ends_in_intron	12780475	12780475	-	asmbl_55366	none	Trinity_GG_23382_c2_g1_i1	1	STRG.11584.2	1
scaffold_8	ends_in_intron	4888626	4888626	+	asmbl_51862	none	blat.proc3829875.chain_2371	1	STRG.9952.1,blat.proc3829875.chain_2367	2
scaffold_14	alt_acceptor	15928071	15928072	-	asmbl_13747	none	STRG.17822.3	1	STRG.17822.4	1
scaffold_2	alternate_exon	7881050	7881454	+	asmbl_24619	none	Trinity_GG_1183_c0_g1_i20,blat.proc3829871.chain_2183	2	Trinity_GG_1183_c0_g1_i2,blat.proc3829871.chain_2181	2
scaffold_10	alt_acceptor	5390516	5390517	+	asmbl_4446	none	blat.proc3829877.chain_994	1	STRG.12356.1,blat.proc3829877.chain_992	2
scaffold_13	alt_donor	9240001	9240002	+	asmbl_11165,asmbl_11166	none	STRG.16167.2,blat.proc3829879.chain_803	2	STRG.16167.1,blat.proc3829879.chain_802	2
scaffold_4	spliced_intron	3383834	3384084	+	asmbl_42514,asmbl_42518,asmbl_42519,asmbl_42520	none	STRG.4269.2,STRG.4269.3,blat.proc3829873.chain_584,blat.proc3829873.chain_585,blat.proc3829873.chain_587	5	blat.proc3829873.chain_588	1
scaffold_6	skipped_exon	8172800	8173560	-	asmbl_48474	none	Trinity_GG_21366_c0_g1_i3,blat.proc3829889.chain_3717	2	STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3716,blat.proc3829889.chain_3724	4
scaffold_20	starts_in_intron	334445	334445	-	asmbl_26422	none	STRG.22711.1,blat.proc3829897.chain_3460	2	STRG.22711.2	1
scaffold_2	retained_intron	15455859	15455931	+	asmbl_25068,asmbl_25069,asmbl_25070	none	STRG.2500.2,blat.proc3829871.chain_2684,blat.proc3829871.chain_2685	3	STRG.2500.1,blat.proc3829871.chain_2679,blat.proc3829871.chain_2680,blat.proc3829871.chain_2681,blat.proc3829871.chain_2682,blat.proc3829871.chain_2683	6
scaffold_18	retained_intron	11472870	11472947	+	asmbl_20967	none	STRG.21671.2,Trinity_GG_11977_c0_g1_i2,blat.proc3829881.chain_2629	3	STRG.21671.1,blat.proc3829881.chain_2630	2
scaffold_16	skipped_exon	9625301	9625822	-	asmbl_16469	none	STRG.19561.2,blat.proc3829897.chain_576	2	STRG.19561.1,blat.proc3829897.chain_575	2
scaffold_28	alternate_exon	7154144	7154388	+	asmbl_38330	none	STRG.29751.1,blat.proc3829885.chain_2852	2	STRG.29751.2,blat.proc3829885.chain_2849,blat.proc3829885.chain_2850,blat.proc3829885.chain_2853	4
scaffold_3	alt_donor	15838025	15838026	+	asmbl_40547	none	STRG.3859.2	1	STRG.3859.1,blat.proc3829873.chain_267	2
scaffold_10	ends_in_intron	8941091	8941091	+	asmbl_4623	none	Trinity_GG_6910_c0_g1_i2,blat.proc3829877.chain_1113	2	STRG.12633.1,Trinity_GG_6910_c0_g1_i1,blat.proc3829877.chain_1112	3
scaffold_15	alt_acceptor	1422577	1422578	-	asmbl_14963	none	STRG.17937.1,blat.proc3829895.chain_2638	2	STRG.17937.2	1
scaffold_5	retained_intron	2536271	2536536	+	asmbl_43837	none	STRG.5769.2,blat.proc3829873.chain_1952	2	STRG.5769.3,blat.proc3829873.chain_1953	2
scaffold_6	retained_exon	18660363	18660383	+	asmbl_47777	none	blat.proc3829875.chain_949,blat.proc3829875.chain_950	2	STRG.8534.1,blat.proc3829875.chain_946,blat.proc3829875.chain_948	3
scaffold_2	skipped_exon	7469617	7471000	-	asmbl_23284	none	Trinity_GG_18127_c0_g1_i8,blat.proc3829887.chain_1895	2	STRG.2075.3,STRG.2075.4,Trinity_GG_18127_c0_g1_i18,blat.proc3829887.chain_1892,blat.proc3829887.chain_1893	5
scaffold_11	alt_donor	12045375	12045376	+	asmbl_5972,asmbl_5974	none	STRG.14113.2,STRG.14113.3,Trinity_GG_7741_c0_g1_i2,blat.proc3829877.chain_2531	4	STRG.14113.1,blat.proc3829877.chain_2532	2
scaffold_13	retained_intron	7192853	7192955	-	asmbl_9821	none	Trinity_GG_26037_c0_g1_i6,blat.proc3829895.chain_845	2	STRG.16001.1,STRG.16001.2,STRG.16001.3,blat.proc3829895.chain_839,blat.proc3829895.chain_840,blat.proc3829895.chain_841,blat.proc3829895.chain_843,blat.proc3829895.chain_844	8
scaffold_12	alt_donor	9236366	9236367	-	asmbl_7788,asmbl_7791,asmbl_7794,asmbl_7799	none	STRG.14912.2,STRG.14912.3,blat.proc3829893.chain_3301,blat.proc3829893.chain_3307	4	STRG.14912.6,STRG.14912.8,blat.proc3829893.chain_3300,blat.proc3829893.chain_3304,blat.proc3829893.chain_3305	5
scaffold_23	retained_intron	7982612	7982719	+	asmbl_31043	none	blat.proc3829883.chain_2988	1	STRG.26088.2	1
scaffold_3	retained_exon	8999962	9000055	-	asmbl_39001,asmbl_39005	none	blat.proc3829887.chain_3227,blat.proc3829887.chain_3230,blat.proc3829887.chain_3231	3	STRG.3425.1,STRG.3425.2	2
scaffold_23	skipped_exon	7277470	7278108	-	asmbl_31743	none	STRG.26034.4	1	STRG.26034.1,STRG.26034.2,STRG.26034.3,blat.proc3829899.chain_3127	4
scaffold_6	alternate_exon	7990263	7994891	-	asmbl_48456	none	STRG.7669.2,blat.proc3829889.chain_3694	2	STRG.7669.1	1
scaffold_1	ends_in_intron	12934875	12934875	-	asmbl_786	none	STRG.923.3,Trinity_GG_17492_c1_g1_i1,blat.proc3829887.chain_810	3	STRG.923.1,STRG.923.2,Trinity_GG_17492_c0_g1_i1,blat.proc3829887.chain_808	4
scaffold_22	ends_in_intron	7699191	7699191	-	asmbl_30187	none	Trinity_GG_31033_c0_g1_i2,blat.proc3829899.chain_2184	2	STRG.25102.1,blat.proc3829899.chain_2185	2
scaffold_12	alt_acceptor	12308256	12308257	+	asmbl_8953	none	STRG.15117.5	1	STRG.15117.1,STRG.15117.2,blat.proc3829877.chain_3596	3
scaffold_18	spliced_intron	7867463	7867646	+	asmbl_20822,asmbl_20823,asmbl_20824,asmbl_20825,asmbl_20828,asmbl_20829,asmbl_20831,asmbl_20833	none	STRG.21477.1,STRG.21477.2,STRG.21477.3,STRG.21477.6,Trinity_GG_11877_c0_g1_i12,Trinity_GG_11877_c0_g1_i14,Trinity_GG_11877_c0_g1_i6,Trinity_GG_11877_c0_g1_i7,blat.proc3829881.chain_2468,blat.proc3829881.chain_2469,blat.proc3829881.chain_2471,blat.proc3829881.chain_2473,blat.proc3829881.chain_2474,blat.proc3829881.chain_2475,blat.proc3829881.chain_2476	15	STRG.21477.4,blat.proc3829881.chain_2467	2
scaffold_18	starts_in_intron	3788423	3788423	+	asmbl_20506	none	Trinity_GG_11640_c0_g1_i2,blat.proc3829881.chain_2026	2	STRG.21184.1,Trinity_GG_11640_c0_g1_i1,blat.proc3829881.chain_2025	3
scaffold_2	starts_in_intron	861113	861113	+	asmbl_24132	none	STRG.1560.2,blat.proc3829871.chain_1607	2	STRG.1560.1	1
scaffold_24	retained_intron	9119810	9119908	+	asmbl_32511	none	Trinity_GG_14906_c0_g1_i10,blat.proc3829885.chain_103	2	Trinity_GG_14906_c0_g1_i3,blat.proc3829885.chain_100	2
scaffold_6	retained_intron	18269773	18269974	+	asmbl_47767,asmbl_47769	none	STRG.8494.1,STRG.8494.3,Trinity_GG_4678_c0_g1_i1	3	STRG.8494.2,blat.proc3829875.chain_916	2
scaffold_5	spliced_intron	10195272	10195388	-	asmbl_45702,asmbl_45703,asmbl_45704,asmbl_45705,asmbl_45706,asmbl_45707	none	STRG.6312.1,blat.proc3829889.chain_2386,blat.proc3829889.chain_2387,blat.proc3829889.chain_2388,blat.proc3829889.chain_2390,blat.proc3829889.chain_2393,blat.proc3829889.chain_2394	7	blat.proc3829889.chain_2389,blat.proc3829889.chain_2391	2
scaffold_14	alt_donor	10019061	10019062	-	asmbl_13389	none	STRG.17358.3,blat.proc3829895.chain_2065	2	STRG.17358.4,blat.proc3829895.chain_2067	2
scaffold_13	spliced_intron	925797	925912	-	asmbl_9350	none	STRG.15451.1,blat.proc3829895.chain_196	2	blat.proc3829895.chain_195	1
scaffold_6	alternate_exon	18047598	18047903	-	asmbl_49161	none	STRG.8479.1,blat.proc3829891.chain_773	2	STRG.8479.3,blat.proc3829891.chain_772	2
scaffold_25	alt_donor	7927682	7927683	+	asmbl_33689,asmbl_33691	none	STRG.27606.1,STRG.27606.2,Trinity_GG_15185_c0_g1_i1,blat.proc3829885.chain_568	4	STRG.27606.3,Trinity_GG_15185_c0_g1_i2,blat.proc3829885.chain_569	3
scaffold_9	alt_donor	2823444	2823445	+	asmbl_53850	none	STRG.10907.1,Trinity_GG_6067_c0_g1_i1,blat.proc3829875.chain_3388	3	STRG.10907.2	1
scaffold_4	skipped_exon	12628852	12629485	-	asmbl_41684	none	blat.proc3829889.chain_894	1	STRG.4901.1,STRG.4901.3,blat.proc3829889.chain_893,blat.proc3829889.chain_896	4
scaffold_19	alt_donor	13262264	13262265	-	asmbl_21851,asmbl_21852	none	STRG.22635.1,blat.proc3829897.chain_3420,blat.proc3829897.chain_3422	3	STRG.22635.2	1
scaffold_9	spliced_intron	16568264	16568413	+	asmbl_54580	none	STRG.11798.2	1	Trinity_GG_6586_c0_g1_i10,Trinity_GG_6586_c0_g1_i23,blat.proc3829877.chain_552,blat.proc3829877.chain_555	4
scaffold_6	alternate_exon	885617	885770	-	asmbl_48034	none	blat.proc3829889.chain_3164	1	STRG.7153.2	1
scaffold_7	alt_donor	9816879	9816880	-	asmbl_49888	none	STRG.9169.1,blat.proc3829891.chain_1396	2	STRG.9169.2,blat.proc3829891.chain_1395	2
scaffold_16	starts_in_intron	11688487	11688487	-	asmbl_16534	none	blat.proc3829897.chain_613	1	STRG.19682.1,blat.proc3829897.chain_615	2
scaffold_6	retained_exon	2880868	2881305	-	asmbl_48127	none	STRG.7279.1,blat.proc3829889.chain_3251	2	blat.proc3829889.chain_3250	1
scaffold_12	retained_exon	7962714	7962843	+	asmbl_8762,asmbl_8763	none	STRG.14845.1,STRG.14845.2,blat.proc3829877.chain_3276,blat.proc3829877.chain_3277	4	STRG.14845.3	1
scaffold_12	ends_in_intron	7616843	7616843	-	asmbl_7730,asmbl_7734,asmbl_7735,asmbl_7736	none	STRG.14826.3,STRG.14826.4,STRG.14826.5,STRG.14826.6	4	STRG.14826.1,STRG.14826.2,blat.proc3829893.chain_3215	3
scaffold_8	alt_acceptor	17492934	17492935	+	asmbl_52470,asmbl_52471,asmbl_52474,asmbl_52476,asmbl_52478,asmbl_52479	none	STRG.10668.1,STRG.10668.2,STRG.10668.3,STRG.10668.4,Trinity_GG_5917_c0_g1_i2,blat.proc3829875.chain_3152,blat.proc3829875.chain_3155,blat.proc3829875.chain_3156,blat.proc3829875.chain_3157,blat.proc3829875.chain_3158	10	Trinity_GG_5917_c0_g1_i6,blat.proc3829875.chain_3151	2
scaffold_11	retained_intron	13257061	13257404	+	asmbl_6019	none	Trinity_GG_7818_c0_g1_i4,blat.proc3829877.chain_2652	2	STRG.14184.1,STRG.14184.2,STRG.14184.3,blat.proc3829877.chain_2651,blat.proc3829877.chain_2653,blat.proc3829877.chain_2654	6
scaffold_12	alt_donor	6527067	6527068	-	asmbl_7675	none	STRG.14739.2	1	STRG.14739.1,blat.proc3829893.chain_3129,blat.proc3829893.chain_3130	3
scaffold_9	alt_acceptor	8585600	8585601	+	asmbl_54164	none	STRG.11257.3	1	STRG.11257.1	1
scaffold_10	retained_intron	3078017	3078168	+	asmbl_4305	none	blat.proc3829877.chain_758	1	STRG.12122.1,blat.proc3829877.chain_757	2
scaffold_1	alt_donor	11098609	11098610	+	asmbl_2048	none	STRG.729.1,blat.proc3829871.chain_781	2	STRG.729.2	1
scaffold_24	retained_intron	9120008	9120346	+	asmbl_32511,asmbl_32513,asmbl_32515	none	Trinity_GG_14906_c0_g1_i10,blat.proc3829885.chain_101,blat.proc3829885.chain_103,blat.proc3829885.chain_97	4	STRG.26927.1,blat.proc3829885.chain_102,blat.proc3829885.chain_104,blat.proc3829885.chain_98	4
scaffold_1295	ends_in_intron	1174	1174	+	asmbl_9259	none	Trinity_GG_16885_c0_g1_i3,blat.proc3829885.chain_3497	2	STRG.30557.1,blat.proc3829885.chain_3495,blat.proc3829885.chain_3496,blat.proc3829885.chain_3498	4
scaffold_6	alt_acceptor	10182611	10182612	-	asmbl_48607	none	STRG.7851.2	1	STRG.7851.1,blat.proc3829891.chain_116,blat.proc3829891.chain_117,blat.proc3829891.chain_118	4
scaffold_15	alternate_exon	1506891	1506988	+	asmbl_13953	none	STRG.17946.2,Trinity_GG_9880_c0_g1_i4,blat.proc3829879.chain_2634	3	STRG.17946.1	1
scaffold_24	retained_intron	1064662	1064849	+	asmbl_32071	none	STRG.26360.1,Trinity_GG_14583_c0_g1_i1,Trinity_GG_14583_c0_g1_i4,blat.proc3829883.chain_3294,blat.proc3829883.chain_3296	5	STRG.26360.4,STRG.26360.5,blat.proc3829883.chain_3295	3
scaffold_12	alternate_exon	10611616	10611666	+	asmbl_8919	none	STRG.15029.2	1	STRG.15029.1,blat.proc3829877.chain_3547	2
scaffold_20	alt_acceptor	10986917	10986918	+	asmbl_26160	none	STRG.23608.3	1	Trinity_GG_13068_c0_g1_i4,blat.proc3829883.chain_750	2
scaffold_9	alt_donor	11876548	11876549	+	asmbl_54372	none	Trinity_GG_6418_c0_g1_i2,blat.proc3829877.chain_280	2	STRG.11498.1	1
scaffold_13	starts_in_intron	272267	272267	+	asmbl_10435,asmbl_10436,asmbl_10438	none	STRG.15416.1,STRG.15416.2,STRG.15416.3,blat.proc3829879.chain_124,blat.proc3829879.chain_125	5	blat.proc3829879.chain_127	1
scaffold_22	alt_donor	10945256	10945257	-	asmbl_30404	none	blat.proc3829899.chain_2455	1	blat.proc3829899.chain_2453	1
scaffold_9	starts_in_intron	6404035	6404035	+	asmbl_54083	none	blat.proc3829875.chain_3633	1	STRG.11163.1,STRG.11163.2,STRG.11163.3,Trinity_GG_6211_c0_g1_i2,Trinity_GG_6211_c0_g1_i4,blat.proc3829875.chain_3632,blat.proc3829875.chain_3634	7
scaffold_17	spliced_intron	680623	680807	-	asmbl_18684,asmbl_18685,asmbl_18686,asmbl_18688,asmbl_18689	none	STRG.19908.1,STRG.19908.2,STRG.19908.3,blat.proc3829897.chain_873,blat.proc3829897.chain_874,blat.proc3829897.chain_875,blat.proc3829897.chain_877	7	blat.proc3829897.chain_876	1
scaffold_8	spliced_intron	16501928	16502016	-	asmbl_53406,asmbl_53411,asmbl_53413,asmbl_53414,asmbl_53415,asmbl_53416,asmbl_53418,asmbl_53419,asmbl_53420,asmbl_53421,asmbl_53422,asmbl_53423,asmbl_53424,asmbl_53425,asmbl_53427,asmbl_53428,asmbl_53429,asmbl_53430	none	STRG.10621.1,STRG.10621.2,STRG.10621.3,STRG.10621.4,STRG.10621.5,Trinity_GG_22960_c0_g1_i18,Trinity_GG_22960_c0_g1_i19,Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2857,blat.proc3829891.chain_2859,blat.proc3829891.chain_2860,blat.proc3829891.chain_2862,blat.proc3829891.chain_2863,blat.proc3829891.chain_2864,blat.proc3829891.chain_2865,blat.proc3829891.chain_2867,blat.proc3829891.chain_2868,blat.proc3829891.chain_2869,blat.proc3829891.chain_2870,blat.proc3829891.chain_2871,blat.proc3829891.chain_2872	25	Trinity_GG_22960_c0_g1_i7,blat.proc3829891.chain_2861	2
scaffold_5	retained_intron	11630546	11631086	-	asmbl_45801,asmbl_45803	none	blat.proc3829889.chain_2526,blat.proc3829889.chain_2528	2	blat.proc3829889.chain_2525,blat.proc3829889.chain_2529	2
scaffold_27	alternate_exon	6195097	6195472	+	asmbl_36341	none	STRG.28993.2	1	STRG.28993.1,STRG.28993.3,STRG.28993.4	3
scaffold_14	retained_intron	7525035	7525343	+	asmbl_12150,asmbl_12152	none	STRG.17182.1,Trinity_GG_9453_c0_g1_i2,Trinity_GG_9453_c0_g1_i3,blat.proc3829879.chain_1912,blat.proc3829879.chain_1914	5	STRG.17182.2,Trinity_GG_9453_c0_g1_i1,blat.proc3829879.chain_1913	3
scaffold_21	alt_donor	3162117	3162118	+	asmbl_28481,asmbl_28482,asmbl_28483,asmbl_28484,asmbl_28491	none	STRG.23945.2,STRG.23945.3,blat.proc3829883.chain_1049,blat.proc3829883.chain_1051,blat.proc3829883.chain_1053,blat.proc3829883.chain_1054,blat.proc3829883.chain_1056	7	STRG.23945.1,STRG.23945.4,STRG.23945.5,blat.proc3829883.chain_1050,blat.proc3829883.chain_1052,blat.proc3829883.chain_1055	6
scaffold_14	retained_exon	11573626	11573663	-	asmbl_13487	none	STRG.17490.4	1	STRG.17490.5,blat.proc3829895.chain_2173,blat.proc3829895.chain_2180	3
scaffold_20	skipped_exon	5915146	5916949	-	asmbl_26706	none	STRG.23183.2	1	STRG.23183.1,blat.proc3829899.chain_129	2
scaffold_18	ends_in_intron	7029797	7029797	+	asmbl_20735	none	Trinity_GG_11820_c0_g2_i1,blat.proc3829881.chain_2370	2	STRG.21402.1,blat.proc3829881.chain_2369	2
scaffold_3	spliced_intron	6200511	6200607	-	asmbl_38870,asmbl_38871	none	STRG.3259.1,STRG.3259.2,Trinity_GG_18786_c0_g1_i1,blat.proc3829887.chain_3001	4	STRG.3259.3,Trinity_GG_18786_c0_g1_i2,blat.proc3829887.chain_3000	3
scaffold_15	spliced_intron	15158080	15158445	+	asmbl_14667,asmbl_14668	none	blat.proc3829879.chain_3399,blat.proc3829879.chain_3402	2	Trinity_GG_10325_c0_g1_i7,Trinity_GG_10325_c0_g1_i8,blat.proc3829879.chain_3400,blat.proc3829879.chain_3401	4
scaffold_7	alternate_exon	8172270	8172330	+	asmbl_50842	none	STRG.9039.3,Trinity_GG_5002_c0_g2_i2,blat.proc3829875.chain_1469	3	STRG.9039.1,blat.proc3829875.chain_1470	2
scaffold_11	spliced_intron	8103129	8103233	+	asmbl_5693,asmbl_5694,asmbl_5696,asmbl_5697	none	STRG.13811.1,STRG.13811.2,STRG.13811.3,blat.proc3829877.chain_2300,blat.proc3829877.chain_2301,blat.proc3829877.chain_2303	6	Trinity_GG_7614_c1_g1_i5,blat.proc3829877.chain_2302	2
scaffold_12	alternate_exon	4787046	4789336	-	asmbl_7579,asmbl_7582	none	STRG.14646.3,STRG.14646.4,Trinity_GG_25172_c1_g1_i1,blat.proc3829893.chain_3025,blat.proc3829893.chain_3026	5	STRG.14646.1,STRG.14646.2,blat.proc3829893.chain_3017,blat.proc3829893.chain_3018,blat.proc3829893.chain_3022,blat.proc3829893.chain_3023	6
scaffold_3	starts_in_intron	19028621	19028621	-	asmbl_39583	none	blat.proc3829889.chain_119	1	blat.proc3829889.chain_120,blat.proc3829889.chain_121	2
scaffold_3	alt_acceptor	14668612	14668613	+	asmbl_40504,asmbl_40505	none	STRG.3808.1,STRG.3808.3,Trinity_GG_2137_c0_g1_i3,blat.proc3829873.chain_212	4	STRG.3808.2,Trinity_GG_2137_c0_g1_i1,blat.proc3829873.chain_211	3
scaffold_11	ends_in_intron	5258830	5258830	+	asmbl_5522	none	Trinity_GG_7479_c0_g1_i1	1	STRG.13602.5	1
scaffold_19	retained_intron	8805742	8805841	+	asmbl_22361	none	STRG.22319.3	1	STRG.22319.1,blat.proc3829881.chain_3246	2
scaffold_26	alternate_exon	2955125	2960899	-	asmbl_34734,asmbl_34736	none	STRG.27973.2,STRG.27973.4,blat.proc3829901.chain_1229,blat.proc3829901.chain_1233	4	STRG.27973.5,Trinity_GG_32695_c1_g1_i4,blat.proc3829901.chain_1231	3
scaffold_3	retained_exon	13725221	13725754	-	asmbl_39242,asmbl_39244,asmbl_39245	none	STRG.3718.1,Trinity_GG_19028_c0_g1_i3,Trinity_GG_19028_c0_g1_i4,Trinity_GG_19028_c0_g1_i5,blat.proc3829887.chain_3446,blat.proc3829887.chain_3447,blat.proc3829887.chain_3448	7	Trinity_GG_19028_c0_g1_i2,blat.proc3829887.chain_3445	2
scaffold_19	ends_in_intron	11482678	11482678	-	asmbl_21612,asmbl_21622	none	Trinity_GG_29530_c0_g1_i9,blat.proc3829897.chain_3189,blat.proc3829897.chain_3191	3	STRG.22477.1,STRG.22477.3,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184,blat.proc3829897.chain_3187,blat.proc3829897.chain_3192	6
scaffold_13	retained_intron	7936040	7936337	-	asmbl_9875,asmbl_9876	none	STRG.16055.2,STRG.16055.3,blat.proc3829895.chain_800,blat.proc3829895.chain_803	4	STRG.16055.1,blat.proc3829895.chain_798,blat.proc3829895.chain_799	3
scaffold_1097	retained_intron	2773	2913	+	asmbl_5201,asmbl_5202	none	STRG.30514.3,Trinity_GG_16864_c0_g1_i1,blat.proc3829885.chain_3429,blat.proc3829885.chain_3471,blat.proc3829885.chain_3504	5	STRG.30514.1	1
scaffold_27	alt_donor	2554034	2554035	-	asmbl_36781	none	STRG.28710.2,blat.proc3829901.chain_1863	2	STRG.28710.1,blat.proc3829901.chain_1864	2
scaffold_17	spliced_intron	13196844	13197082	-	asmbl_19409,asmbl_19411	none	STRG.20803.3,blat.proc3829897.chain_1734	2	blat.proc3829897.chain_1736	1
scaffold_1	alt_donor	16095684	16095685	-	asmbl_978	none	blat.proc3829887.chain_1025	1	STRG.1128.1,blat.proc3829887.chain_1026	2
scaffold_17	alt_donor	1507922	1507923	+	asmbl_17739	none	Trinity_GG_10949_c0_g1_i1,blat.proc3829881.chain_815	2	STRG.19975.1,STRG.19975.2,Trinity_GG_10949_c0_g1_i2,blat.proc3829881.chain_816	4
scaffold_13	retained_intron	3371276	3371709	+	asmbl_10670	none	Trinity_GG_8579_c0_g1_i2,blat.proc3829879.chain_305	2	STRG.15639.1,blat.proc3829879.chain_306	2
scaffold_2	retained_intron	7241982	7242169	+	asmbl_24585,asmbl_24587,asmbl_24590	none	blat.proc3829871.chain_2164,blat.proc3829871.chain_2166,blat.proc3829871.chain_2171	3	STRG.2061.1,blat.proc3829871.chain_2168,blat.proc3829871.chain_2169,blat.proc3829871.chain_2170,blat.proc3829871.chain_2172	5
scaffold_6	alternate_exon	10137466	10138189	-	asmbl_48587	none	STRG.7838.2,Trinity_GG_21433_c1_g1_i1,blat.proc3829891.chain_80	3	STRG.7838.1,STRG.7838.3,blat.proc3829891.chain_79	3
scaffold_2	starts_in_intron	15300331	15300331	+	asmbl_25052	none	STRG.2478.3,blat.proc3829871.chain_2504	2	STRG.2478.1,STRG.2478.2,blat.proc3829871.chain_2505	3
scaffold_1	ends_in_intron	60579	60579	-	asmbl_9	none	Trinity_GG_17029_c1_g1_i1,blat.proc3829885.chain_3691	2	STRG.7.1,blat.proc3829885.chain_3690	2
scaffold_27	spliced_intron	2998561	2998674	+	asmbl_36110,asmbl_36111,asmbl_36113,asmbl_36114,asmbl_36115,asmbl_36118,asmbl_36119,asmbl_36120,asmbl_36121,asmbl_36122	none	STRG.28767.1,STRG.28767.2,STRG.28767.3,STRG.28767.4,STRG.28767.5,blat.proc3829885.chain_1839,blat.proc3829885.chain_1841,blat.proc3829885.chain_1842,blat.proc3829885.chain_1843,blat.proc3829885.chain_1844,blat.proc3829885.chain_1847,blat.proc3829885.chain_1848,blat.proc3829885.chain_1849	13	Trinity_GG_15918_c0_g1_i12,blat.proc3829885.chain_1840,blat.proc3829885.chain_1845	3
scaffold_20	ends_in_intron	9984180	9984180	-	asmbl_26996	none	Trinity_GG_30129_c1_g1_i1	1	STRG.23528.1	1
scaffold_1	starts_in_intron	18091615	18091615	-	asmbl_1089	none	blat.proc3829887.chain_1170	1	STRG.1270.1	1
scaffold_15	ends_in_intron	389651	389651	+	asmbl_13910	none	STRG.17879.3	1	STRG.17879.1,STRG.17879.2,blat.proc3829879.chain_2569,blat.proc3829879.chain_2571,blat.proc3829879.chain_2573,blat.proc3829879.chain_2574,blat.proc3829879.chain_2575	7
scaffold_13	retained_intron	6623425	6623614	+	asmbl_10942,asmbl_10944	none	Trinity_GG_8717_c0_g1_i1,Trinity_GG_8717_c0_g1_i4,blat.proc3829879.chain_544,blat.proc3829879.chain_546	4	Trinity_GG_8717_c0_g1_i2,Trinity_GG_8717_c0_g1_i3,blat.proc3829879.chain_545,blat.proc3829879.chain_548	4
scaffold_11	alt_donor	7804289	7804290	-	asmbl_6781	none	STRG.13771.2,blat.proc3829893.chain_2255	2	STRG.13771.1,blat.proc3829893.chain_2256	2
scaffold_10	retained_intron	6466373	6466479	-	asmbl_3381,asmbl_3384	none	blat.proc3829893.chain_941,blat.proc3829893.chain_944	2	blat.proc3829893.chain_940,blat.proc3829893.chain_942,blat.proc3829893.chain_943,blat.proc3829893.chain_945	4
scaffold_16	retained_exon	7236607	7236702	-	asmbl_16344,asmbl_16346,asmbl_16347,asmbl_16350	none	STRG.19382.1,STRG.19382.3,STRG.19382.6,STRG.19382.8	4	STRG.19382.7	1
scaffold_2	spliced_intron	8874291	8874368	+	asmbl_24690	none	STRG.2139.4	1	STRG.2139.1,blat.proc3829871.chain_2259,blat.proc3829871.chain_2260	3
scaffold_3	ends_in_intron	11642530	11642530	+	asmbl_40320,asmbl_40321	none	STRG.3593.4,blat.proc3829873.chain_15	2	STRG.3593.1,blat.proc3829873.chain_14	2
scaffold_10	starts_in_intron	1174697	1174697	+	asmbl_4200	none	Trinity_GG_6677_c0_g2_i1,blat.proc3829877.chain_712	2	STRG.12000.2,blat.proc3829877.chain_708,blat.proc3829877.chain_710	3
scaffold_11	spliced_intron	8716123	8716595	-	asmbl_6853	none	STRG.13887.1,blat.proc3829893.chain_2333	2	blat.proc3829893.chain_2332	1
scaffold_18	alt_acceptor	2061712	2061713	-	asmbl_19738	none	STRG.21083.2,Trinity_GG_28836_c0_g1_i1,blat.proc3829897.chain_1998	3	STRG.21083.1,Trinity_GG_28836_c0_g1_i2,blat.proc3829897.chain_1999	3
scaffold_19	starts_in_intron	12194371	12194371	-	asmbl_21677	none	Trinity_GG_29502_c0_g1_i3,blat.proc3829897.chain_3134	2	STRG.22535.1,Trinity_GG_29502_c0_g1_i1,blat.proc3829897.chain_3133	3
scaffold_22	starts_in_intron	11040532	11040532	+	asmbl_29660	none	Trinity_GG_14050_c0_g1_i2,blat.proc3829883.chain_2378	2	STRG.25420.1,blat.proc3829883.chain_2377	2
scaffold_14	spliced_intron	11676499	11676859	-	asmbl_13504	none	STRG.17497.2,blat.proc3829895.chain_2194	2	STRG.17497.3,blat.proc3829895.chain_2193	2
scaffold_17	alternate_exon	2713862	2713888	+	asmbl_17820	none	STRG.20055.2	1	STRG.20055.1	1
scaffold_20	retained_intron	1469911	1470058	-	asmbl_26507,asmbl_26508	none	blat.proc3829897.chain_3656,blat.proc3829897.chain_3658	2	STRG.22854.2,STRG.22854.3,blat.proc3829897.chain_3659,blat.proc3829897.chain_3660,blat.proc3829897.chain_3661	5
scaffold_11	spliced_intron	6138503	6138584	-	asmbl_6675,asmbl_6677	none	STRG.13667.1,blat.proc3829893.chain_2099,blat.proc3829893.chain_2100	3	blat.proc3829893.chain_2098	1
scaffold_20	ends_in_intron	1571618	1571618	+	asmbl_25585	none	Trinity_GG_12574_c0_g1_i5	1	STRG.22871.2	1
scaffold_24	alt_acceptor	6834174	6834175	+	asmbl_32356,asmbl_32359	none	STRG.26717.2,blat.proc3829883.chain_3661,blat.proc3829883.chain_3662	3	Trinity_GG_14799_c1_g1_i1,blat.proc3829883.chain_3657,blat.proc3829883.chain_3664	3
scaffold_23	retained_intron	9518168	9518194	-	asmbl_31820	none	Trinity_GG_31639_c0_g1_i1	1	blat.proc3829899.chain_3258	1
scaffold_22	alt_donor	6927246	6927247	-	asmbl_30113	none	STRG.24994.1,blat.proc3829899.chain_2087	2	STRG.24994.2,blat.proc3829899.chain_2089	2
scaffold_3	starts_in_intron	4985893	4985893	+	asmbl_40010	none	Trinity_GG_1772_c1_g1_i1,blat.proc3829871.chain_3317	2	STRG.3196.1,blat.proc3829871.chain_3316	2
scaffold_5	retained_intron	4696342	4696593	+	asmbl_43951	none	STRG.5917.1	1	blat.proc3829873.chain_2093	1
scaffold_8	retained_intron	10059557	10059771	-	asmbl_53097	none	blat.proc3829891.chain_2382	1	STRG.10258.1,blat.proc3829891.chain_2380	2
scaffold_9	alt_donor	9694692	9694693	-	asmbl_55201,asmbl_55203,asmbl_55205	none	STRG.11334.2,STRG.11334.3,blat.proc3829891.chain_3513,blat.proc3829891.chain_3515	4	STRG.11334.1,blat.proc3829891.chain_3512,blat.proc3829891.chain_3514	3
scaffold_7	alternate_exon	8506662	8511682	+	asmbl_50886,asmbl_50887,asmbl_50891	none	STRG.9068.1,STRG.9068.2,STRG.9068.4,blat.proc3829875.chain_1525,blat.proc3829875.chain_1527	5	STRG.9068.3	1
scaffold_13	retained_intron	2271214	2271358	-	asmbl_9404,asmbl_9405	none	blat.proc3829895.chain_310,blat.proc3829895.chain_317	2	STRG.15533.1,STRG.15533.2,STRG.15533.3,blat.proc3829895.chain_308,blat.proc3829895.chain_309,blat.proc3829895.chain_311,blat.proc3829895.chain_316	7
scaffold_13	starts_in_intron	11586208	11586208	+	asmbl_11270,asmbl_11271	none	STRG.16295.4,blat.proc3829879.chain_1017	2	STRG.16295.2,STRG.16295.3,blat.proc3829879.chain_1015,blat.proc3829879.chain_1018,blat.proc3829879.chain_1019,blat.proc3829879.chain_1020	6
scaffold_340	retained_intron	2968	3178	+	asmbl_40965	none	STRG.30267.4	1	STRG.30267.1,STRG.30267.2,STRG.30267.3,blat.proc3829885.chain_3313,blat.proc3829893.chain_1073	5
scaffold_11	retained_exon	11931003	11931261	-	asmbl_7019,asmbl_7022,asmbl_7023	none	STRG.14160.3,STRG.14160.4,STRG.14160.5	3	STRG.14160.2	1
scaffold_12	alternate_exon	6414305	6414581	+	asmbl_8643,asmbl_8644	none	STRG.14730.3,STRG.14730.4	2	STRG.14730.1,STRG.14730.2,blat.proc3829877.chain_3203,blat.proc3829877.chain_3204	4
scaffold_16	starts_in_intron	6202339	6202339	-	asmbl_16322	none	blat.proc3829897.chain_427	1	STRG.19375.1,STRG.19375.2,blat.proc3829897.chain_424	3
scaffold_23	alt_donor	5583740	5583741	+	asmbl_30881,asmbl_30885	none	STRG.25912.1,STRG.25912.2,Trinity_GG_14263_c0_g1_i1,blat.proc3829883.chain_2728	4	STRG.25912.3,blat.proc3829883.chain_2729	2
scaffold_15	skipped_exon	144997	147178	-	asmbl_14921	none	STRG.17865.5	1	STRG.17865.2,blat.proc3829895.chain_2599	2
scaffold_10	alternate_exon	10603456	10606340	+	asmbl_4705	none	blat.proc3829877.chain_1277	1	STRG.12741.1	1
scaffold_13	alt_acceptor	2352541	2352542	+	asmbl_10576,asmbl_10579,asmbl_10588	none	STRG.15543.6,STRG.15543.7,blat.proc3829879.chain_162	3	STRG.15543.3,STRG.15543.9,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161	9
scaffold_6	alternate_exon	17709238	17709268	+	asmbl_47717	none	STRG.8452.1,Trinity_GG_4630_c0_g1_i1,blat.proc3829875.chain_808	3	STRG.8452.2	1
scaffold_14	skipped_exon	10424625	10426296	-	asmbl_13406	none	STRG.17377.2	1	STRG.17377.1,Trinity_GG_26764_c0_g1_i2,blat.proc3829895.chain_2112	3
scaffold_21	retained_exon	731447	731519	+	asmbl_28312,asmbl_28315,asmbl_28316	none	STRG.23754.1,STRG.23754.2,STRG.23754.4,Trinity_GG_13126_c0_g1_i1,blat.proc3829883.chain_853	5	STRG.23754.5	1
scaffold_13	starts_in_intron	2859033	2859033	-	asmbl_9441	none	blat.proc3829895.chain_354	1	STRG.15575.1,blat.proc3829895.chain_351,blat.proc3829895.chain_352,blat.proc3829895.chain_353	4
scaffold_16	retained_exon	6144210	6144351	+	asmbl_17070,asmbl_17072,asmbl_17073,asmbl_17074,asmbl_17075	none	STRG.19342.2,blat.proc3829881.chain_208,blat.proc3829881.chain_209,blat.proc3829881.chain_210,blat.proc3829881.chain_212,blat.proc3829881.chain_214	6	STRG.19342.1,STRG.19342.3,STRG.19342.4	3
scaffold_12	retained_intron	15425104	15425462	-	asmbl_8218	none	blat.proc3829895.chain_67	1	STRG.15330.1,blat.proc3829895.chain_68,blat.proc3829895.chain_69,blat.proc3829895.chain_70	4
scaffold_1	retained_intron	8645118	8645235	-	asmbl_476,asmbl_482	none	STRG.572.3,blat.proc3829887.chain_457	2	STRG.572.1,STRG.572.2,blat.proc3829887.chain_454,blat.proc3829887.chain_456,blat.proc3829887.chain_458	5
scaffold_7	retained_intron	4934589	4935841	+	asmbl_50650,asmbl_50651,asmbl_50652,asmbl_50654,asmbl_50663	none	STRG.8834.4,blat.proc3829875.chain_1277,blat.proc3829875.chain_1278,blat.proc3829875.chain_1279,blat.proc3829875.chain_1281,blat.proc3829875.chain_1283	6	STRG.8834.1,STRG.8834.2,STRG.8834.3,blat.proc3829875.chain_1275,blat.proc3829875.chain_1276,blat.proc3829875.chain_1282	6
scaffold_3	retained_exon	13648702	13648766	-	asmbl_39226	none	STRG.3705.2,Trinity_GG_19021_c0_g1_i1,blat.proc3829887.chain_3436	3	STRG.3705.3,Trinity_GG_19021_c0_g1_i3,blat.proc3829887.chain_3435	3
scaffold_13	retained_exon	6293320	6293472	+	asmbl_10902,asmbl_10905	none	STRG.15910.2,blat.proc3829879.chain_560,blat.proc3829879.chain_561	3	STRG.15910.1,blat.proc3829879.chain_559,blat.proc3829879.chain_562	3
scaffold_7	starts_in_intron	9911611	9911611	+	asmbl_50982	none	STRG.9191.2	1	STRG.9191.1	1
scaffold_15	alt_acceptor	12106788	12106789	+	asmbl_14480,asmbl_14481	none	STRG.18659.1,STRG.18659.2	2	blat.proc3829879.chain_3249	1
scaffold_4	starts_in_intron	15729480	15729480	-	asmbl_41870	none	blat.proc3829889.chain_1185	1	STRG.5163.1,STRG.5163.2,blat.proc3829889.chain_1184,blat.proc3829889.chain_1186	4
scaffold_2	starts_in_intron	14204019	14204019	-	asmbl_23593	none	blat.proc3829887.chain_2301	1	STRG.2411.3	1
scaffold_12	retained_intron	14171917	14172236	+	asmbl_9032	none	Trinity_GG_8405_c0_g1_i9,blat.proc3829877.chain_3705	2	STRG.15236.2,blat.proc3829877.chain_3706	2
scaffold_10	retained_exon	5259104	5259245	-	asmbl_3268	none	STRG.12347.2,blat.proc3829893.chain_805	2	STRG.12347.1,blat.proc3829893.chain_806	2
scaffold_10	spliced_intron	3063468	3063729	-	asmbl_3068	none	STRG.12117.2,blat.proc3829893.chain_587	2	STRG.12117.1,Trinity_GG_23774_c0_g1_i2,blat.proc3829893.chain_588	3
scaffold_4	retained_intron	6282645	6283128	-	asmbl_41411	none	Trinity_GG_19560_c0_g1_i2,blat.proc3829889.chain_665	2	STRG.4498.1,STRG.4498.2,Trinity_GG_19560_c0_g1_i1,Trinity_GG_19560_c0_g1_i6,Trinity_GG_19560_c0_g1_i9,blat.proc3829889.chain_662,blat.proc3829889.chain_663,blat.proc3829889.chain_666,blat.proc3829889.chain_668	9
scaffold_14	starts_in_intron	2123919	2123919	-	asmbl_12897	none	Trinity_GG_26440_c0_g1_i5,blat.proc3829895.chain_1526	2	STRG.16822.1,Trinity_GG_26440_c0_g1_i4,Trinity_GG_26440_c0_g1_i7,Trinity_GG_26440_c0_g1_i9,blat.proc3829895.chain_1527,blat.proc3829895.chain_1528,blat.proc3829895.chain_1529,blat.proc3829895.chain_1530	8
scaffold_1	alternate_exon	44039	56531	-	asmbl_2	none	STRG.19.1,Trinity_GG_17053_c1_g1_i1,blat.proc3829885.chain_3732,blat.proc3829885.chain_3735	4	blat.proc3829885.chain_3729,blat.proc3829885.chain_3731	2
scaffold_21	starts_in_intron	10890537	10890537	+	asmbl_28902	none	STRG.24550.2,blat.proc3829883.chain_1552	2	STRG.24550.1,blat.proc3829883.chain_1551	2
scaffold_16	starts_in_intron	10091429	10091429	+	asmbl_17317	none	Trinity_GG_10739_c0_g1_i1,blat.proc3829881.chain_470	2	STRG.19575.1,blat.proc3829881.chain_471	2
scaffold_1	alt_donor	14429194	14429195	+	asmbl_2373,asmbl_2374,asmbl_2376	none	STRG.1043.1,blat.proc3829871.chain_1034,blat.proc3829871.chain_1035,blat.proc3829871.chain_1036	4	STRG.1043.2	1
scaffold_4	retained_intron	5228399	5231130	-	asmbl_41313	none	Trinity_GG_19430_c0_g1_i1,blat.proc3829889.chain_440	2	STRG.4417.1,STRG.4417.3,blat.proc3829889.chain_436,blat.proc3829889.chain_439	4
scaffold_10	alt_donor	10505457	10505458	-	asmbl_3649	none	STRG.12728.1,blat.proc3829893.chain_1197	2	blat.proc3829893.chain_1196	1
scaffold_10	ends_in_intron	13284967	13284967	-	asmbl_3776	none	Trinity_GG_24247_c0_g1_i1	1	STRG.12910.4,blat.proc3829893.chain_1433,blat.proc3829893.chain_1435	3
scaffold_15	retained_exon	8986430	8986483	+	asmbl_14316	none	STRG.18435.1,blat.proc3829879.chain_3027	2	STRG.18435.2,blat.proc3829879.chain_3025	2
scaffold_12	retained_intron	7534953	7535423	+	asmbl_8729	none	Trinity_GG_8178_c0_g1_i2,blat.proc3829877.chain_3299	2	STRG.14820.1,Trinity_GG_8178_c0_g1_i1,blat.proc3829877.chain_3298	3
scaffold_13	skipped_exon	11377535	11379297	-	asmbl_10043,asmbl_10045,asmbl_10047,asmbl_10048,asmbl_10050,asmbl_10052,asmbl_10053	none	STRG.16287.1,STRG.16287.2,STRG.16287.3,STRG.16287.4,Trinity_GG_26140_c0_g1_i1,Trinity_GG_26140_c0_g1_i11,Trinity_GG_26140_c0_g1_i3,Trinity_GG_26140_c0_g1_i4,Trinity_GG_26140_c0_g1_i5,Trinity_GG_26140_c0_g1_i8,blat.proc3829895.chain_1024,blat.proc3829895.chain_1026,blat.proc3829895.chain_1028,blat.proc3829895.chain_1032,blat.proc3829895.chain_1033,blat.proc3829895.chain_1034	16	STRG.16287.5,STRG.16287.8,Trinity_GG_26140_c0_g1_i6,Trinity_GG_26140_c0_g1_i9,blat.proc3829895.chain_1029,blat.proc3829895.chain_1031	6
scaffold_22	alternate_exon	11640414	11640754	-	asmbl_30461	none	STRG.25493.3	1	STRG.25493.1,STRG.25493.2,STRG.25493.4,blat.proc3829899.chain_2578	4
scaffold_11	alt_donor	15654451	15654452	-	asmbl_7177,asmbl_7178,asmbl_7179	none	STRG.14297.1,blat.proc3829893.chain_2729,blat.proc3829893.chain_2731,blat.proc3829893.chain_2733	4	STRG.14297.2,blat.proc3829893.chain_2730,blat.proc3829893.chain_2732,blat.proc3829893.chain_2736,blat.proc3829893.chain_2737	5
scaffold_21	alt_acceptor	7387549	7387550	+	asmbl_28747	none	STRG.24246.1,blat.proc3829883.chain_1379	2	STRG.24246.2,blat.proc3829883.chain_1381	2
scaffold_1	starts_in_intron	4574454	4574454	-	asmbl_208	none	STRG.277.5	1	STRG.277.1,blat.proc3829887.chain_133,blat.proc3829887.chain_135,blat.proc3829887.chain_137	4
scaffold_10	alt_donor	5010323	5010324	-	asmbl_3250	none	STRG.12317.1,blat.proc3829893.chain_748	2	STRG.12317.2,blat.proc3829893.chain_747	2
scaffold_16	starts_in_intron	8086375	8086375	-	asmbl_16406	none	blat.proc3829897.chain_445	1	STRG.19441.1,blat.proc3829897.chain_444	2
scaffold_13	alternate_exon	6620165	6620215	-	asmbl_9765	none	STRG.15949.1	1	STRG.15949.2,Trinity_GG_25988_c0_g1_i3,blat.proc3829895.chain_728	3
scaffold_16	alternate_exon	1881523	1881598	+	asmbl_16896	none	Trinity_GG_10486_c0_g1_i5,blat.proc3829879.chain_3730	2	STRG.19097.1,STRG.19097.2,STRG.19097.3,Trinity_GG_10486_c0_g1_i2,blat.proc3829879.chain_3728	5
scaffold_11	spliced_intron	6534474	6535499	-	asmbl_6694	none	STRG.13688.1,blat.proc3829893.chain_2141	2	STRG.13688.2,blat.proc3829893.chain_2140	2
scaffold_21	starts_in_intron	2655232	2655232	-	asmbl_27510	none	blat.proc3829899.chain_909	1	STRG.23889.1,STRG.23889.2,STRG.23889.3,STRG.23889.4,Trinity_GG_30293_c0_g1_i10,Trinity_GG_30293_c0_g1_i6,blat.proc3829899.chain_908,blat.proc3829899.chain_910,blat.proc3829899.chain_913,blat.proc3829899.chain_914,blat.proc3829899.chain_915	11
scaffold_11	alt_donor	10398883	10398884	+	asmbl_5907,asmbl_5909	none	STRG.14037.2,blat.proc3829877.chain_2427	2	STRG.14037.1,blat.proc3829877.chain_2425,blat.proc3829877.chain_2426	3
scaffold_7	starts_in_intron	17810257	17810257	+	asmbl_51389	none	blat.proc3829875.chain_2101	1	STRG.9616.1,blat.proc3829875.chain_2097,blat.proc3829875.chain_2098,blat.proc3829875.chain_2099,blat.proc3829875.chain_2100,blat.proc3829875.chain_2102,blat.proc3829875.chain_2104,blat.proc3829875.chain_2105	8
scaffold_16	spliced_intron	125053	125275	+	asmbl_16785	none	STRG.18995.1,Trinity_GG_10419_c0_g1_i4,blat.proc3829879.chain_3618	3	STRG.18995.2,Trinity_GG_10419_c0_g1_i2,Trinity_GG_10419_c0_g1_i3,blat.proc3829879.chain_3619,blat.proc3829879.chain_3620	5
scaffold_15	retained_exon	12123802	12123873	+	asmbl_14482	none	STRG.18678.1,blat.proc3829879.chain_3256	2	STRG.18678.2	1
scaffold_5	retained_exon	15418245	15418370	-	asmbl_46048	none	STRG.6723.3	1	STRG.6723.2,blat.proc3829889.chain_2799	2
scaffold_4	alt_donor	6286322	6286323	-	asmbl_41408,asmbl_41411	none	STRG.4498.1,Trinity_GG_19560_c0_g1_i2,Trinity_GG_19560_c0_g1_i6,blat.proc3829889.chain_665,blat.proc3829889.chain_666	5	STRG.4498.2,Trinity_GG_19560_c0_g1_i1,blat.proc3829889.chain_663	3
scaffold_4	starts_in_intron	9909666	9909666	+	asmbl_42964	none	blat.proc3829873.chain_1131	1	STRG.4757.2,blat.proc3829873.chain_1130	2
scaffold_28	retained_intron	7421777	7421872	-	asmbl_37729	none	blat.proc3829901.chain_2841	1	STRG.29795.1,blat.proc3829901.chain_2842	2
scaffold_7	spliced_intron	13014655	13014839	-	asmbl_50093,asmbl_50098,asmbl_50099	none	STRG.9408.1,blat.proc3829891.chain_1652,blat.proc3829891.chain_1657	3	STRG.9408.2	1
scaffold_19	alt_acceptor	6740773	6740774	+	asmbl_22242	none	STRG.22176.1	1	STRG.22176.2,Trinity_GG_12247_c0_g1_i1	2
scaffold_5	retained_intron	6708882	6708998	-	asmbl_45516,asmbl_45518	none	STRG.6069.1,STRG.6069.2,Trinity_GG_20388_c0_g1_i1,blat.proc3829889.chain_2075,blat.proc3829889.chain_2076	5	Trinity_GG_20388_c0_g1_i2,blat.proc3829889.chain_2074	2
scaffold_20	ends_in_intron	9500367	9500367	+	asmbl_26009	none	blat.proc3829883.chain_532	1	STRG.23474.2,blat.proc3829883.chain_530,blat.proc3829883.chain_531	3
scaffold_20	alt_acceptor	1624100	1624101	-	asmbl_26523	none	STRG.22888.3	1	STRG.22888.1,STRG.22888.2	2
scaffold_17	spliced_intron	1512243	1512407	-	asmbl_18763	none	STRG.19976.1,blat.proc3829897.chain_952	2	blat.proc3829897.chain_951	1
scaffold_4	alt_donor	2202908	2202909	-	asmbl_41134	none	STRG.4215.1,blat.proc3829889.chain_329	2	STRG.4215.2,blat.proc3829889.chain_328	2
scaffold_4	spliced_intron	7090140	7091175	+	asmbl_42796	none	STRG.4545.3,blat.proc3829873.chain_943	2	STRG.4545.1,STRG.4545.4,blat.proc3829873.chain_945	3
scaffold_14	alternate_exon	14147837	14147954	+	asmbl_12510	none	Trinity_GG_9669_c0_g1_i3,blat.proc3829879.chain_2282	2	STRG.17676.1,STRG.17676.3,STRG.17676.5	3
scaffold_19	alt_acceptor	12086627	12086628	-	asmbl_21662	none	STRG.22515.1,blat.proc3829897.chain_3106	2	blat.proc3829897.chain_3107	1
scaffold_18	spliced_intron	8726674	8726780	+	asmbl_20882,asmbl_20883,asmbl_20884,asmbl_20885,asmbl_20888	none	STRG.21533.1,STRG.21533.2,STRG.21533.3,STRG.21533.5,blat.proc3829881.chain_2483,blat.proc3829881.chain_2484,blat.proc3829881.chain_2485,blat.proc3829881.chain_2486,blat.proc3829881.chain_2488	9	STRG.21533.6,Trinity_GG_11882_c0_g1_i2,blat.proc3829881.chain_2487	3
scaffold_1097	spliced_intron	2773	2913	+	asmbl_5204	none	STRG.30514.1	1	STRG.30514.3,Trinity_GG_16864_c0_g1_i1,blat.proc3829885.chain_3429,blat.proc3829885.chain_3471,blat.proc3829885.chain_3504	5
scaffold_13	retained_intron	16460477	16460808	-	asmbl_10275	none	Trinity_GG_26334_c0_g1_i4,blat.proc3829895.chain_1354	2	STRG.16689.1,STRG.16689.2,STRG.16689.3,STRG.16689.4,Trinity_GG_26334_c0_g1_i2,Trinity_GG_26334_c0_g1_i3,blat.proc3829895.chain_1353,blat.proc3829895.chain_1355,blat.proc3829895.chain_1356,blat.proc3829895.chain_1357	10
scaffold_18	spliced_intron	1500051	1500145	+	asmbl_20379,asmbl_20381	none	STRG.21023.1,Trinity_GG_11574_c0_g1_i2,blat.proc3829881.chain_1905,blat.proc3829881.chain_1907	4	Trinity_GG_11574_c0_g1_i3,blat.proc3829881.chain_1906	2
scaffold_13	alt_donor	2347962	2347963	+	asmbl_10576,asmbl_10578,asmbl_10590,asmbl_10591	none	STRG.15543.3,STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_156	4	STRG.15543.6,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161,blat.proc3829879.chain_162	9
scaffold_8	alt_donor	10041128	10041129	-	asmbl_53090	none	STRG.10251.3,blat.proc3829891.chain_2364	2	STRG.10251.2,blat.proc3829891.chain_2366	2
scaffold_3	skipped_exon	14576071	14578468	-	asmbl_39345	none	STRG.3795.2,blat.proc3829887.chain_3612	2	STRG.3795.1,blat.proc3829887.chain_3613	2
scaffold_6	alt_acceptor	878679	878680	+	asmbl_46637	none	STRG.7151.3	1	STRG.7151.1	1
scaffold_6	ends_in_intron	13948301	13948301	+	asmbl_47487,asmbl_47488	none	STRG.8140.2,STRG.8140.3	2	STRG.8140.1,Trinity_GG_4452_c0_g1_i2,blat.proc3829875.chain_535	3
scaffold_5	ends_in_intron	18180625	18180625	+	asmbl_44871	none	Trinity_GG_3801_c1_g1_i3,blat.proc3829873.chain_3059	2	STRG.6948.1,STRG.6948.2,STRG.6948.3,Trinity_GG_3801_c1_g1_i2,Trinity_GG_3801_c1_g1_i4,blat.proc3829873.chain_3057,blat.proc3829873.chain_3058	7
scaffold_1	starts_in_intron	14356370	14356370	+	asmbl_2366	none	STRG.1032.2	1	STRG.1032.1,blat.proc3829871.chain_1124	2
scaffold_23	retained_exon	5618925	5619809	-	asmbl_31645	none	STRG.25917.3,blat.proc3829899.chain_3025	2	STRG.25917.4,Trinity_GG_31507_c0_g2_i3,blat.proc3829899.chain_3027	3
scaffold_11	starts_in_intron	3800035	3800035	-	asmbl_6562	none	STRG.13492.1,blat.proc3829893.chain_1910	2	STRG.13492.2	1
scaffold_17	ends_in_intron	6183292	6183292	-	asmbl_19014	none	Trinity_GG_28423_c0_g1_i2,blat.proc3829897.chain_1251	2	STRG.20283.2	1
scaffold_2	retained_intron	951147	953178	+	asmbl_24186	none	STRG.1574.4,Trinity_GG_901_c0_g2_i1,Trinity_GG_901_c0_g2_i2,blat.proc3829871.chain_1652,blat.proc3829871.chain_1653	5	STRG.1574.1,STRG.1574.2,STRG.1574.3,blat.proc3829871.chain_1647	4
scaffold_14	skipped_exon	1590407	1591852	-	asmbl_12877	none	STRG.16786.4	1	STRG.16786.5	1
scaffold_25	retained_intron	9554175	9556117	+	asmbl_33820,asmbl_33821	none	STRG.27755.3,blat.proc3829885.chain_777	2	STRG.27755.1,blat.proc3829885.chain_779	2
scaffold_22	skipped_exon	4286224	4288162	-	asmbl_30005	none	STRG.24837.3	1	STRG.24837.1,blat.proc3829899.chain_1955,blat.proc3829899.chain_1956	3
scaffold_13	alt_donor	14563632	14563633	-	asmbl_10163,asmbl_10164,asmbl_10165,asmbl_10166	none	STRG.16497.1,STRG.16497.3,STRG.16497.4,STRG.16497.5,blat.proc3829895.chain_1172	5	STRG.16497.2,blat.proc3829895.chain_1167	2
scaffold_12	alt_donor	14043881	14043882	-	asmbl_8093,asmbl_8094,asmbl_8095	none	STRG.15216.2,STRG.15216.5,blat.proc3829893.chain_3659,blat.proc3829893.chain_3662	4	STRG.15216.1,STRG.15216.3,STRG.15216.4,blat.proc3829893.chain_3658,blat.proc3829893.chain_3661	5
scaffold_22	retained_intron	4241052	4241193	-	asmbl_29985	none	blat.proc3829899.chain_1983	1	STRG.24838.1,STRG.24838.2,STRG.24838.3,STRG.24838.4,Trinity_GG_30899_c1_g1_i5,blat.proc3829899.chain_1980,blat.proc3829899.chain_1981,blat.proc3829899.chain_1982	8
scaffold_8	starts_in_intron	8793095	8793095	-	asmbl_52964	none	blat.proc3829891.chain_2253	1	STRG.10127.1,blat.proc3829891.chain_2254,blat.proc3829891.chain_2256	3
scaffold_11	alt_donor	3552599	3552600	+	asmbl_5410	none	STRG.13470.1,blat.proc3829877.chain_1949	2	blat.proc3829877.chain_1947	1
scaffold_25	alt_donor	9337552	9337553	+	asmbl_33799,asmbl_33800	none	STRG.27743.1,blat.proc3829885.chain_770,blat.proc3829885.chain_773	3	blat.proc3829885.chain_775	1
scaffold_4	spliced_intron	14618979	14619065	+	asmbl_43232	none	STRG.5085.1,blat.proc3829873.chain_1430	2	blat.proc3829873.chain_1429	1
scaffold_7	starts_in_intron	11121602	11121602	-	asmbl_49961	none	Trinity_GG_22226_c0_g1_i1,blat.proc3829891.chain_1484	2	STRG.9248.1,blat.proc3829891.chain_1483	2
scaffold_19	retained_intron	12102324	12102615	-	asmbl_21666	none	STRG.22519.1,blat.proc3829897.chain_3205	2	STRG.22519.2,blat.proc3829897.chain_3206	2
scaffold_12	ends_in_intron	8556735	8556735	+	asmbl_8787	none	blat.proc3829877.chain_3402	1	STRG.14871.1,blat.proc3829877.chain_3401,blat.proc3829877.chain_3403	3
scaffold_11	spliced_intron	8567155	8567273	+	asmbl_5762	none	STRG.13862.1,Trinity_GG_7617_c0_g1_i3,blat.proc3829877.chain_2306	3	Trinity_GG_7617_c0_g1_i1,Trinity_GG_7617_c0_g1_i2,blat.proc3829877.chain_2307,blat.proc3829877.chain_2308	4
scaffold_17	spliced_intron	8731691	8732397	+	asmbl_18148	none	STRG.20476.2,blat.proc3829881.chain_1276	2	STRG.20476.1,Trinity_GG_11221_c0_g1_i3,blat.proc3829881.chain_1277	3
scaffold_7	starts_in_intron	18393169	18393169	-	asmbl_50291	none	Trinity_GG_22427_c0_g1_i8,blat.proc3829891.chain_1872	2	STRG.9659.1,STRG.9659.2,STRG.9659.3,STRG.9659.4,STRG.9659.5,Trinity_GG_22427_c0_g1_i10,Trinity_GG_22427_c0_g1_i11,Trinity_GG_22427_c0_g1_i15,Trinity_GG_22427_c0_g1_i5,blat.proc3829891.chain_1867,blat.proc3829891.chain_1868,blat.proc3829891.chain_1869,blat.proc3829891.chain_1870,blat.proc3829891.chain_1871,blat.proc3829891.chain_1873,blat.proc3829891.chain_1874,blat.proc3829891.chain_1875	17
scaffold_14	retained_exon	1376332	1376480	-	asmbl_12855,asmbl_12856,asmbl_12858,asmbl_12859	none	STRG.16775.1,STRG.16775.2,STRG.16775.3,blat.proc3829895.chain_1487,blat.proc3829895.chain_1488,blat.proc3829895.chain_1489	6	blat.proc3829895.chain_1490	1
scaffold_5	alternate_exon	16262204	16262295	+	asmbl_44728	none	STRG.6806.2,Trinity_GG_3662_c0_g1_i1,blat.proc3829873.chain_2823	3	STRG.6806.1,Trinity_GG_3662_c0_g1_i2,blat.proc3829873.chain_2822	3
scaffold_23	alternate_exon	2308053	2310320	+	asmbl_30689	none	blat.proc3829883.chain_2531	1	STRG.25687.2,Trinity_GG_14156_c0_g1_i4,blat.proc3829883.chain_2533	3
scaffold_8	starts_in_intron	9868129	9868129	+	asmbl_52110	none	blat.proc3829875.chain_2696	1	STRG.10225.2,STRG.10225.4,blat.proc3829875.chain_2691,blat.proc3829875.chain_2692,blat.proc3829875.chain_2693,blat.proc3829875.chain_2694,blat.proc3829875.chain_2695,blat.proc3829875.chain_2697	8
scaffold_15	starts_in_intron	15447211	15447211	+	asmbl_14742	none	Trinity_GG_10389_c0_g1_i3,blat.proc3829879.chain_3561	2	STRG.18933.1,STRG.18933.2,Trinity_GG_10389_c0_g1_i2,Trinity_GG_10389_c0_g1_i7,blat.proc3829879.chain_3560,blat.proc3829879.chain_3564,blat.proc3829879.chain_3565	7
scaffold_2	alt_donor	16279061	16279062	+	asmbl_25128,asmbl_25131,asmbl_25132,asmbl_25133,asmbl_25135	none	STRG.2564.3,blat.proc3829871.chain_2780,blat.proc3829871.chain_2781,blat.proc3829871.chain_2782,blat.proc3829871.chain_2783	5	STRG.2564.1,blat.proc3829871.chain_2777,blat.proc3829871.chain_2784,blat.proc3829871.chain_2785,blat.proc3829871.chain_2786	5
scaffold_13	alt_donor	2506963	2506964	+	asmbl_10604,asmbl_10606	none	STRG.15546.1,Trinity_GG_8559_c0_g1_i5,blat.proc3829879.chain_268	3	STRG.15546.2,Trinity_GG_8559_c0_g1_i1,blat.proc3829879.chain_271	3
scaffold_2	alt_donor	16420805	16420806	-	asmbl_23702,asmbl_23703,asmbl_23706	none	STRG.2585.1,STRG.2585.2,blat.proc3829887.chain_2409,blat.proc3829887.chain_2412	4	STRG.2585.3,blat.proc3829887.chain_2410	2
scaffold_3	retained_intron	3268072	3268486	-	asmbl_38720	none	blat.proc3829887.chain_2796	1	STRG.3088.1,STRG.3088.2,STRG.3088.3,blat.proc3829887.chain_2792,blat.proc3829887.chain_2794	5
scaffold_11	ends_in_intron	8724031	8724031	+	asmbl_5791,asmbl_5792,asmbl_5794	none	STRG.13889.1,STRG.13889.3,STRG.13889.4,Trinity_GG_7670_c0_g1_i2,Trinity_GG_7670_c0_g1_i5,blat.proc3829877.chain_2402,blat.proc3829877.chain_2404	7	STRG.13889.2	1
scaffold_14	retained_intron	2573325	2573401	+	asmbl_11851	none	Trinity_GG_9273_c0_g1_i2,Trinity_GG_9273_c0_g1_i3,blat.proc3829879.chain_1569,blat.proc3829879.chain_1570	4	STRG.16851.1,Trinity_GG_9273_c0_g1_i1,blat.proc3829879.chain_1568	3
scaffold_9	retained_intron	11843488	11843598	-	asmbl_55300	none	blat.proc3829891.chain_3621	1	STRG.11491.1,blat.proc3829891.chain_3619,blat.proc3829891.chain_3620,blat.proc3829891.chain_3622,blat.proc3829891.chain_3623,blat.proc3829891.chain_3624,blat.proc3829891.chain_3625,blat.proc3829891.chain_3626	8
scaffold_12	spliced_intron	6424684	6424834	-	asmbl_7665	none	STRG.14731.1,blat.proc3829893.chain_3149	2	STRG.14731.2,STRG.14731.3,STRG.14731.4,blat.proc3829893.chain_3150,blat.proc3829893.chain_3151	5
scaffold_21	starts_in_intron	2423931	2423931	+	asmbl_28407	none	Trinity_GG_13208_c0_g1_i1,blat.proc3829883.chain_981	2	STRG.23850.1,Trinity_GG_13208_c0_g1_i2	2
scaffold_14	alt_donor	7298351	7298352	+	asmbl_12124,asmbl_12125,asmbl_12128	none	STRG.17153.1,STRG.17153.2,blat.proc3829879.chain_1853,blat.proc3829879.chain_1854,blat.proc3829879.chain_1855	5	blat.proc3829879.chain_1856	1
scaffold_25	alt_acceptor	1553787	1553788	-	asmbl_34026	none	STRG.27163.1	1	STRG.27163.2	1
scaffold_1	alt_acceptor	17524067	17524068	-	asmbl_1036	none	STRG.1212.2	1	STRG.1213.1,Trinity_GG_17656_c0_g1_i1,blat.proc3829887.chain_1095	3
scaffold_24	retained_intron	6310450	6310978	+	asmbl_32313	none	blat.proc3829883.chain_3586	1	STRG.26676.1,STRG.26676.2,STRG.26676.4,blat.proc3829883.chain_3587	4
scaffold_8	retained_intron	18108227	18108429	+	asmbl_52526	none	STRG.10708.2,Trinity_GG_5942_c0_g1_i3,blat.proc3829875.chain_3202	3	STRG.10708.1,Trinity_GG_5942_c0_g1_i1,blat.proc3829875.chain_3201	3
scaffold_1	ends_in_intron	10856020	10856020	+	asmbl_2021	none	STRG.709.2,blat.proc3829871.chain_773	2	STRG.709.1,STRG.709.3,blat.proc3829871.chain_772	3
scaffold_19	alt_acceptor	2247788	2247789	-	asmbl_21258	none	blat.proc3829897.chain_2712	1	blat.proc3829897.chain_2713	1
scaffold_19	alternate_exon	12425568	12441153	+	asmbl_22603,asmbl_22607,asmbl_22608,asmbl_22609,asmbl_22610,asmbl_22611	none	STRG.22558.1,blat.proc3829881.chain_3515,blat.proc3829881.chain_3516,blat.proc3829881.chain_3517,blat.proc3829881.chain_3518,blat.proc3829881.chain_3519,blat.proc3829881.chain_3520	7	Trinity_GG_12480_c0_g2_i1,blat.proc3829881.chain_3522	2
scaffold_9	retained_intron	9547344	9547423	+	asmbl_54191	none	blat.proc3829875.chain_3740	1	STRG.11303.1,blat.proc3829875.chain_3741	2
scaffold_22	retained_intron	6166014	6166161	-	asmbl_30085	none	Trinity_GG_30948_c0_g1_i1,blat.proc3829899.chain_2063	2	STRG.24956.1,blat.proc3829899.chain_2062	2
scaffold_6	spliced_intron	17671975	17672065	+	asmbl_47713,asmbl_47715	none	STRG.8454.3,STRG.8454.4,blat.proc3829875.chain_846	3	STRG.8454.2,Trinity_GG_4651_c0_g1_i4,blat.proc3829875.chain_848,blat.proc3829875.chain_849	4
scaffold_1	retained_exon	3146428	3146530	-	asmbl_135	none	STRG.193.1,blat.proc3829887.chain_79	2	STRG.193.2,blat.proc3829887.chain_78	2
scaffold_3	spliced_intron	16072508	16072620	+	asmbl_40567,asmbl_40568	none	STRG.3888.1,STRG.3888.2,blat.proc3829873.chain_286,blat.proc3829873.chain_287	4	STRG.3888.3,Trinity_GG_2187_c0_g1_i1,blat.proc3829873.chain_288	3
scaffold_19	spliced_intron	13266345	13266432	-	asmbl_21855	none	STRG.22633.1,blat.proc3829897.chain_3424	2	blat.proc3829897.chain_3423	1
scaffold_6	retained_intron	9091532	9091638	-	asmbl_48538	none	STRG.7779.2,blat.proc3829891.chain_31	2	STRG.7779.1,blat.proc3829891.chain_32	2
scaffold_16	alt_acceptor	673470	673471	+	asmbl_16819,asmbl_16821	none	STRG.19032.3,STRG.19032.4,Trinity_GG_10438_c0_g1_i2,Trinity_GG_10438_c0_g1_i7,blat.proc3829879.chain_3652,blat.proc3829879.chain_3654	6	STRG.19032.1,STRG.19032.2,Trinity_GG_10438_c0_g1_i3,blat.proc3829879.chain_3650,blat.proc3829879.chain_3651,blat.proc3829879.chain_3653	6
scaffold_14	spliced_intron	8213726	8214121	-	asmbl_13237,asmbl_13238,asmbl_13240,asmbl_13241,asmbl_13242	none	STRG.17218.1,STRG.17218.2,STRG.17218.3,blat.proc3829895.chain_1928,blat.proc3829895.chain_1929,blat.proc3829895.chain_1930,blat.proc3829895.chain_1931	7	Trinity_GG_26673_c0_g1_i5,blat.proc3829895.chain_1932	2
scaffold_11	spliced_intron	8050351	8050449	+	asmbl_5676	none	STRG.13800.2,Trinity_GG_7571_c0_g1_i1,blat.proc3829877.chain_2229	3	STRG.13800.1,Trinity_GG_7571_c0_g2_i2,blat.proc3829877.chain_2230	3
scaffold_1	alt_acceptor	13883297	13883298	-	asmbl_857	none	STRG.993.5,blat.proc3829887.chain_866	2	STRG.993.1,STRG.993.2,STRG.993.3,STRG.993.4,blat.proc3829887.chain_867,blat.proc3829887.chain_868	6
scaffold_15	starts_in_intron	14325526	14325526	-	asmbl_15736	none	Trinity_GG_27599_c0_g1_i11	1	STRG.18855.3,blat.proc3829895.chain_3603	2
scaffold_15	spliced_intron	15355271	15355388	+	asmbl_14705	none	STRG.18909.2,blat.proc3829879.chain_3499	2	STRG.18909.1,STRG.18909.3,Trinity_GG_10368_c0_g1_i4,Trinity_GG_10368_c0_g1_i7,Trinity_GG_10368_c0_g1_i9,blat.proc3829879.chain_3501,blat.proc3829879.chain_3502,blat.proc3829879.chain_3503,blat.proc3829879.chain_3504,blat.proc3829879.chain_3505	10
scaffold_2	spliced_intron	926100	926762	+	asmbl_24176	none	STRG.1569.4	1	STRG.1569.3	1
scaffold_21	alt_acceptor	5956773	5956774	-	asmbl_27736,asmbl_27737	none	blat.proc3829899.chain_1203,blat.proc3829899.chain_1204	2	STRG.24113.1	1
scaffold_14	retained_intron	1590384	1590520	-	asmbl_12876	none	blat.proc3829895.chain_1441	1	STRG.16786.5	1
scaffold_2	retained_intron	5392157	5392284	-	asmbl_23176	none	blat.proc3829887.chain_1758	1	STRG.1948.1,STRG.1948.2,blat.proc3829887.chain_1756,blat.proc3829887.chain_1757	4
scaffold_8	alternate_exon	14406348	14411940	-	asmbl_53316	none	STRG.10520.1,blat.proc3829891.chain_2543	2	blat.proc3829891.chain_2544	1
scaffold_6	spliced_intron	13871424	13871524	+	asmbl_47477	none	STRG.8125.1,Trinity_GG_21655_c0_g1_i1,Trinity_GG_4470_c0_g1_i1,Trinity_GG_4470_c0_g1_i5,blat.proc3829875.chain_560,blat.proc3829875.chain_562,blat.proc3829891.chain_484	7	STRG.8125.3,Trinity_GG_21655_c0_g1_i3,Trinity_GG_4470_c0_g1_i6,blat.proc3829875.chain_559,blat.proc3829891.chain_485	5
scaffold_7	alternate_exon	18393951	18393999	-	asmbl_50290,asmbl_50293	none	Trinity_GG_22427_c0_g1_i15,Trinity_GG_22427_c0_g1_i5,blat.proc3829891.chain_1867,blat.proc3829891.chain_1874	4	STRG.9659.1,STRG.9659.3,STRG.9659.5,Trinity_GG_22427_c0_g1_i10,Trinity_GG_22427_c0_g1_i11,blat.proc3829891.chain_1868,blat.proc3829891.chain_1869,blat.proc3829891.chain_1870,blat.proc3829891.chain_1875	9
scaffold_16	retained_exon	10448355	10448429	+	asmbl_17339	none	STRG.19602.5	1	STRG.19602.4	1
scaffold_5	starts_in_intron	13316482	13316482	-	asmbl_45916	none	blat.proc3829889.chain_2544	1	STRG.6578.1,STRG.6578.2,blat.proc3829889.chain_2545,blat.proc3829889.chain_2546,blat.proc3829889.chain_2547	5
scaffold_21	alt_donor	730676	730677	+	asmbl_28316	none	STRG.23754.4	1	STRG.23754.2,STRG.23754.5,Trinity_GG_13126_c0_g1_i1,Trinity_GG_13126_c0_g3_i1,blat.proc3829883.chain_853,blat.proc3829883.chain_855	6
scaffold_12	retained_exon	11915921	11916018	-	asmbl_7967	none	STRG.15087.2	1	STRG.15087.1,Trinity_GG_25438_c0_g1_i2,blat.proc3829893.chain_3492	3
scaffold_13	retained_exon	14561660	14563480	-	asmbl_10165	none	STRG.16497.4	1	STRG.16497.1,STRG.16497.2,STRG.16497.5,blat.proc3829895.chain_1167,blat.proc3829895.chain_1172	5
scaffold_23	alt_acceptor	10764263	10764264	-	asmbl_31871	none	STRG.26250.2	1	STRG.26250.1,blat.proc3829899.chain_3299	2
scaffold_21	spliced_intron	6620794	6620944	+	asmbl_28698	none	STRG.24175.1	1	Trinity_GG_13416_c1_g1_i1,Trinity_GG_13416_c1_g1_i2,blat.proc3829883.chain_1360,blat.proc3829883.chain_1361	4
scaffold_3	ends_in_intron	9845663	9845663	-	asmbl_39027	none	blat.proc3829887.chain_3244	1	STRG.3457.1,STRG.3457.2,blat.proc3829887.chain_3242,blat.proc3829887.chain_3245	4
scaffold_10	alt_acceptor	6323878	6323879	-	asmbl_3366	none	STRG.12453.1,blat.proc3829893.chain_880	2	STRG.12453.2,STRG.12453.3,blat.proc3829893.chain_879	3
scaffold_14	skipped_exon	6435038	6437524	-	asmbl_13114	none	STRG.17076.1,blat.proc3829895.chain_1779	2	STRG.17076.2,blat.proc3829895.chain_1778	2
scaffold_26	alternate_exon	7487708	7487820	-	asmbl_34981,asmbl_34982	none	STRG.28364.1,blat.proc3829901.chain_1526,blat.proc3829901.chain_1527	3	blat.proc3829901.chain_1528	1
scaffold_23	alternate_exon	4313092	4313156	-	asmbl_31579	none	blat.proc3829899.chain_2951	1	blat.proc3829899.chain_2952	1
scaffold_9	alternate_exon	13852078	13852147	-	asmbl_55415	none	blat.proc3829893.chain_36	1	STRG.11644.3,blat.proc3829893.chain_31,blat.proc3829893.chain_32,blat.proc3829893.chain_33,blat.proc3829893.chain_35	5
scaffold_5	retained_intron	9812498	9812794	+	asmbl_44311	none	STRG.6289.3,Trinity_GG_3421_c0_g1_i3,blat.proc3829873.chain_2413	3	STRG.6289.1,STRG.6289.2,STRG.6289.4,STRG.6289.5,blat.proc3829873.chain_2411,blat.proc3829873.chain_2412	6
scaffold_15	spliced_intron	8039747	8042221	-	asmbl_15349	none	STRG.18369.1,blat.proc3829895.chain_3067	2	STRG.18369.2,Trinity_GG_27305_c0_g1_i2,Trinity_GG_27305_c0_g1_i5,Trinity_GG_27305_c0_g1_i6,blat.proc3829895.chain_3068,blat.proc3829895.chain_3069,blat.proc3829895.chain_3071	7
scaffold_2	alt_acceptor	686439	686440	+	asmbl_24113	none	STRG.1552.2	1	STRG.1552.1,blat.proc3829871.chain_1606	2
scaffold_6	ends_in_intron	13222571	13222571	+	asmbl_47438	none	blat.proc3829875.chain_511	1	STRG.8077.1,blat.proc3829875.chain_505,blat.proc3829875.chain_506	3
scaffold_1	retained_intron	12745383	12745532	-	asmbl_756,asmbl_761	none	STRG.892.2,STRG.892.3,blat.proc3829887.chain_756	3	STRG.892.4,blat.proc3829887.chain_755	2
scaffold_8	starts_in_intron	1833435	1833435	+	asmbl_51702	none	Trinity_GG_5441_c1_g2_i1	1	blat.proc3829875.chain_2264,blat.proc3829875.chain_2265	2
scaffold_2	retained_exon	11603471	11603482	+	asmbl_24798,asmbl_24799	none	blat.proc3829871.chain_2297,blat.proc3829871.chain_2299,blat.proc3829871.chain_2302	3	STRG.2273.1,STRG.2273.2,STRG.2273.3,blat.proc3829871.chain_2298,blat.proc3829871.chain_2300,blat.proc3829871.chain_2301,blat.proc3829871.chain_2303	7
scaffold_17	retained_intron	8318412	8318617	+	asmbl_18101	none	blat.proc3829881.chain_1249	1	STRG.20443.2	1
scaffold_5	spliced_intron	15463089	15463201	-	asmbl_46060	none	STRG.6726.1	1	STRG.6726.2,blat.proc3829889.chain_2790,blat.proc3829889.chain_2791	3
scaffold_13	ends_in_intron	2344713	2344713	+	asmbl_10568,asmbl_10589	none	STRG.15543.4,blat.proc3829879.chain_165	2	STRG.15543.3,STRG.15543.6,STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_156,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161,blat.proc3829879.chain_162	13
scaffold_13	retained_intron	7717718	7717809	-	asmbl_9865	none	blat.proc3829895.chain_749	1	STRG.16043.1,STRG.16043.2,blat.proc3829895.chain_748,blat.proc3829895.chain_750,blat.proc3829895.chain_751	5
scaffold_5	spliced_intron	3630484	3630505	+	asmbl_43894,asmbl_43895	none	STRG.5828.1,STRG.5828.2	2	Trinity_GG_3205_c0_g1_i1	1
scaffold_9	alternate_exon	8503599	8507527	-	asmbl_55101	none	STRG.11253.1,Trinity_GG_23242_c0_g1_i1,blat.proc3829891.chain_3393	3	STRG.11253.2,Trinity_GG_23242_c0_g1_i2,blat.proc3829891.chain_3394	3
scaffold_2	starts_in_intron	15286861	15286861	+	asmbl_25049	none	STRG.2476.4	1	STRG.2476.1,STRG.2476.3	2
scaffold_2	alt_donor	8874134	8874135	+	asmbl_24687	none	STRG.2139.2,blat.proc3829871.chain_2261	2	STRG.2139.1,STRG.2139.3,STRG.2139.4,blat.proc3829871.chain_2262	4
scaffold_9	retained_intron	119321	119545	+	asmbl_53735	none	Trinity_GG_5979_c0_g1_i4	1	STRG.10764.2,blat.proc3829875.chain_3264	2
scaffold_14	retained_intron	3165584	3165934	+	asmbl_11884,asmbl_11885,asmbl_11898	none	STRG.16893.1,STRG.16893.2,STRG.16893.4,blat.proc3829879.chain_1642	4	blat.proc3829879.chain_1641	1
scaffold_4	alt_donor	18291778	18291779	+	asmbl_43435,asmbl_43437	none	STRG.5424.1,STRG.5424.2,blat.proc3829873.chain_1665	3	STRG.5424.3,STRG.5424.4,STRG.5424.5,STRG.5424.6,blat.proc3829873.chain_1664,blat.proc3829873.chain_1666	6
scaffold_1	alt_donor	20348597	20348598	+	asmbl_2604	none	STRG.1398.6,blat.proc3829871.chain_1446	2	STRG.1398.2,STRG.1398.3,STRG.1398.4	3
scaffold_19	retained_intron	96182	96601	-	asmbl_21187	none	Trinity_GG_29184_c0_g1_i3,blat.proc3829897.chain_2591	2	STRG.21815.1,Trinity_GG_29184_c0_g1_i2,blat.proc3829897.chain_2589	3
scaffold_3	alternate_exon	4288602	4292981	+	asmbl_39956	none	STRG.3132.1,Trinity_GG_1767_c0_g1_i1,blat.proc3829871.chain_3285	3	Trinity_GG_1770_c0_g2_i4,blat.proc3829871.chain_3293	2
scaffold_13	ends_in_intron	13570351	13570351	+	asmbl_11377	none	Trinity_GG_9001_c1_g1_i1	1	STRG.16402.1,blat.proc3829879.chain_1119	2
scaffold_21	spliced_intron	11570695	11570754	-	asmbl_28157	none	STRG.24610.2	1	STRG.24610.1	1
scaffold_7	spliced_intron	8659761	8660031	-	asmbl_49836,asmbl_49837	none	STRG.9091.2,blat.proc3829891.chain_1356,blat.proc3829891.chain_1358	3	blat.proc3829891.chain_1357	1
scaffold_15	starts_in_intron	6956989	6956989	-	asmbl_15292	none	blat.proc3829895.chain_3055	1	STRG.18291.1,STRG.18291.2,STRG.18291.3,STRG.18291.4,blat.proc3829895.chain_3051,blat.proc3829895.chain_3052,blat.proc3829895.chain_3053,blat.proc3829895.chain_3054	8
scaffold_2	ends_in_intron	4597827	4597827	+	asmbl_24390	none	blat.proc3829871.chain_1861	1	STRG.1887.1,blat.proc3829871.chain_1860	2
scaffold_6	ends_in_intron	14388226	14388226	+	asmbl_47540	none	Trinity_GG_4503_c0_g1_i2,blat.proc3829875.chain_606	2	STRG.8192.1,blat.proc3829875.chain_607	2
scaffold_12	spliced_intron	14990698	14991070	-	asmbl_8158	none	STRG.15282.2,Trinity_GG_25571_c0_g1_i4,blat.proc3829893.chain_3744	3	STRG.15282.4,Trinity_GG_25571_c0_g1_i2,blat.proc3829893.chain_3743	3
scaffold_14	alt_acceptor	9273608	9273609	-	asmbl_13346	none	STRG.17323.2	1	STRG.17323.1,blat.proc3829895.chain_1995,blat.proc3829895.chain_1996,blat.proc3829895.chain_1997	4
scaffold_21	starts_in_intron	11262524	11262524	-	asmbl_28133	none	blat.proc3829899.chain_1742	1	STRG.24586.1,Trinity_GG_30772_c0_g1_i4,Trinity_GG_30772_c0_g1_i5,blat.proc3829899.chain_1743,blat.proc3829899.chain_1744	5
scaffold_23	alternate_exon	6861417	6861750	-	asmbl_31707	none	STRG.26000.4,blat.proc3829899.chain_3093	2	STRG.26000.3	1
scaffold_5	alternate_exon	7444107	7444214	-	asmbl_45567	none	STRG.6142.1	1	STRG.6142.2	1
scaffold_8	spliced_intron	11744324	11744678	+	asmbl_52247	none	STRG.10369.1,blat.proc3829875.chain_2910	2	STRG.10369.2,blat.proc3829875.chain_2911	2
scaffold_19	alternate_exon	1656643	1659578	-	asmbl_21242	none	STRG.21913.1,blat.proc3829897.chain_2682	2	STRG.21913.2	1
scaffold_24	alt_donor	4808743	4808744	-	asmbl_32863	none	STRG.26596.1,blat.proc3829899.chain_3638	2	STRG.26596.2	1
scaffold_18	skipped_exon	10004393	10007012	-	asmbl_20128	none	STRG.21580.2	1	STRG.21580.1	1
scaffold_14	starts_in_intron	9292451	9292451	-	asmbl_13355	none	blat.proc3829895.chain_2043,blat.proc3829895.chain_2045	2	STRG.17324.1,STRG.17324.2,STRG.17324.3,STRG.17324.4,blat.proc3829895.chain_2044,blat.proc3829895.chain_2046,blat.proc3829895.chain_2047,blat.proc3829895.chain_2048,blat.proc3829895.chain_2049,blat.proc3829895.chain_2051,blat.proc3829895.chain_2052	11
scaffold_9	alt_donor	2400440	2400441	-	asmbl_54834	none	STRG.10875.2	1	STRG.10875.1	1
scaffold_8	alt_donor	10027593	10027594	-	asmbl_53087	none	STRG.10250.2	1	STRG.10250.1,blat.proc3829891.chain_2348	2
scaffold_20	skipped_exon	9517409	9519809	+	asmbl_26014	none	STRG.23476.1,blat.proc3829883.chain_559	2	STRG.23476.2,blat.proc3829883.chain_560	2
scaffold_11	alternate_exon	9185245	9185889	-	asmbl_6904	none	Trinity_GG_24785_c0_g2_i1,blat.proc3829893.chain_2346	2	STRG.13951.1,Trinity_GG_24785_c0_g1_i2,blat.proc3829893.chain_2345	3
scaffold_19	retained_intron	13011394	13011749	-	asmbl_21799	none	STRG.22610.4	1	STRG.22610.1,STRG.22610.2,STRG.22610.3,blat.proc3829897.chain_3402,blat.proc3829897.chain_3404	5
scaffold_4	alt_donor	16912206	16912207	+	asmbl_43347,asmbl_43348	none	STRG.5280.1,STRG.5280.4	2	STRG.5280.2,STRG.5280.5	2
scaffold_22	alt_donor	484303	484304	+	asmbl_29148	none	STRG.24679.3,Trinity_GG_13642_c0_g1_i3,blat.proc3829883.chain_1726	3	STRG.24679.2	1
scaffold_13	alternate_exon	8356249	8356834	+	asmbl_11115	none	STRG.16112.4	1	STRG.16112.1,STRG.16112.2,STRG.16112.3,Trinity_GG_8876_c0_g1_i5,blat.proc3829879.chain_889,blat.proc3829879.chain_891,blat.proc3829879.chain_892	7
scaffold_17	spliced_intron	13072493	13072592	-	asmbl_19394	none	STRG.20791.2,blat.proc3829897.chain_1718	2	STRG.20791.1,blat.proc3829897.chain_1717	2
scaffold_16	alt_acceptor	5387828	5387829	-	asmbl_16267	none	STRG.19274.3	1	STRG.19274.1,blat.proc3829897.chain_329,blat.proc3829897.chain_330	3
scaffold_19	spliced_intron	4808048	4808289	-	asmbl_21340	none	STRG.22049.1,blat.proc3829897.chain_2800	2	blat.proc3829897.chain_2799	1
scaffold_14	alternate_exon	9287279	9293843	-	asmbl_13352,asmbl_13353,asmbl_13354,asmbl_13358	none	STRG.17324.1,STRG.17324.2,STRG.17324.3,STRG.17324.4,blat.proc3829895.chain_2048,blat.proc3829895.chain_2049,blat.proc3829895.chain_2052	7	blat.proc3829895.chain_2050	1
scaffold_25	alt_acceptor	7927783	7927784	+	asmbl_33691	none	STRG.27606.2	1	STRG.27606.1,STRG.27606.3,Trinity_GG_15185_c0_g1_i1,Trinity_GG_15185_c0_g1_i2,blat.proc3829885.chain_568,blat.proc3829885.chain_569	6
scaffold_10	starts_in_intron	11967934	11967934	+	asmbl_4787	none	Trinity_GG_7032_c0_g1_i2,blat.proc3829877.chain_1315	2	STRG.12831.2,Trinity_GG_7032_c0_g1_i16,blat.proc3829877.chain_1316	3
scaffold_21	ends_in_intron	6393902	6393902	+	asmbl_28653	none	Trinity_GG_13325_c2_g1_i1,blat.proc3829883.chain_1202	2	STRG.24152.1,blat.proc3829883.chain_1199,blat.proc3829883.chain_1200,blat.proc3829883.chain_1201	4
scaffold_20	ends_in_intron	5849237	5849237	-	asmbl_26700	none	blat.proc3829899.chain_201	1	STRG.23172.1,blat.proc3829899.chain_200	2
scaffold_19	skipped_exon	13157579	13158046	+	asmbl_22667	none	STRG.22627.1	1	STRG.22627.2,Trinity_GG_12509_c0_g1_i1,blat.proc3829881.chain_3575	3
scaffold_25	alt_acceptor	8049527	8049528	+	asmbl_33711	none	STRG.27619.1,blat.proc3829885.chain_650	2	blat.proc3829885.chain_651	1
scaffold_7	alternate_exon	1402667	1417399	-	asmbl_49531	none	STRG.8638.1,blat.proc3829891.chain_927,blat.proc3829891.chain_928	3	blat.proc3829891.chain_923	1
scaffold_27	retained_intron	1406245	1406809	-	asmbl_36704	none	STRG.28604.1	1	STRG.28604.2	1
scaffold_20	alternate_exon	6281400	6281474	+	asmbl_25809	none	STRG.23212.1	1	STRG.23212.2	1
scaffold_24	retained_exon	9592748	9592808	-	asmbl_33128	none	STRG.26924.1,blat.proc3829901.chain_225	2	STRG.26924.3	1
scaffold_17	starts_in_intron	9940293	9940293	+	asmbl_18255,asmbl_18259	none	Trinity_GG_11273_c0_g1_i1,blat.proc3829881.chain_1386,blat.proc3829881.chain_1387	3	STRG.20600.1,blat.proc3829881.chain_1385,blat.proc3829881.chain_1389	3
scaffold_22	retained_intron	11544135	11544174	+	asmbl_29697,asmbl_29698	none	STRG.25485.2,STRG.25485.3	2	blat.proc3829883.chain_2362	1
scaffold_22	alternate_exon	11344571	11344677	-	asmbl_30436	none	blat.proc3829899.chain_2552	1	STRG.25449.2,Trinity_GG_31247_c0_g1_i1,blat.proc3829899.chain_2551,blat.proc3829899.chain_2553	4
scaffold_11	alternate_exon	8249802	8249830	-	asmbl_6836	none	STRG.13820.1	1	Trinity_GG_24747_c0_g1_i1,blat.proc3829893.chain_2272	2
scaffold_13	alternate_exon	7527864	7527921	-	asmbl_9857	none	STRG.16032.2,Trinity_GG_26032_c0_g1_i3,blat.proc3829895.chain_833	3	STRG.16032.1,STRG.16032.3,Trinity_GG_26032_c0_g1_i1,Trinity_GG_26032_c0_g1_i4,blat.proc3829895.chain_831,blat.proc3829895.chain_832	6
scaffold_19	retained_intron	1039595	1040154	-	asmbl_21217	none	STRG.21880.1	1	STRG.21880.2	1
scaffold_8	spliced_intron	11277835	11278003	-	asmbl_53142,asmbl_53143,asmbl_53144,asmbl_53145	none	STRG.10339.1,STRG.10339.3,STRG.10339.4,blat.proc3829891.chain_2438,blat.proc3829891.chain_2439,blat.proc3829891.chain_2440	6	STRG.10339.2,Trinity_GG_22740_c0_g1_i4,blat.proc3829891.chain_2437	3
scaffold_23	retained_intron	6291131	6291893	-	asmbl_31688,asmbl_31689,asmbl_31690,asmbl_31691,asmbl_31694	none	STRG.25954.2,Trinity_GG_31552_c0_g1_i3,Trinity_GG_31552_c0_g1_i4,Trinity_GG_31552_c0_g1_i6,Trinity_GG_31552_c0_g1_i7,blat.proc3829899.chain_3102,blat.proc3829899.chain_3103,blat.proc3829899.chain_3105,blat.proc3829899.chain_3106	9	STRG.25954.1,Trinity_GG_31552_c0_g1_i2,Trinity_GG_31552_c0_g1_i5,blat.proc3829899.chain_3101,blat.proc3829899.chain_3104,blat.proc3829899.chain_3107	6
scaffold_7	spliced_intron	1235897	1237961	+	asmbl_50485	none	STRG.8627.8	1	STRG.8627.5,STRG.8627.6,Trinity_GG_4740_c0_g1_i13,Trinity_GG_4740_c0_g1_i14,Trinity_GG_4740_c1_g1_i1,blat.proc3829875.chain_1044,blat.proc3829875.chain_1045,blat.proc3829875.chain_1048	8
scaffold_1	skipped_exon	4225778	4226335	+	asmbl_1637	none	STRG.249.2,blat.proc3829871.chain_308	2	STRG.249.1,blat.proc3829871.chain_306	2
scaffold_7	ends_in_intron	6654951	6654951	-	asmbl_49745	none	blat.proc3829891.chain_1263	1	STRG.8934.1,blat.proc3829891.chain_1261	2
scaffold_11	retained_intron	4756626	4756833	+	asmbl_5482	none	blat.proc3829877.chain_2054	1	STRG.13564.1,blat.proc3829877.chain_2053	2
scaffold_4	alt_donor	13076300	13076301	+	asmbl_43108	none	STRG.4945.3,blat.proc3829873.chain_1238	2	STRG.4945.1,STRG.4945.2,blat.proc3829873.chain_1237	3
scaffold_21	starts_in_intron	3726586	3726586	-	asmbl_27558	none	blat.proc3829899.chain_1023	1	STRG.23948.1,STRG.23948.2,STRG.23948.3,blat.proc3829899.chain_1020,blat.proc3829899.chain_1021,blat.proc3829899.chain_1022	6
scaffold_7	retained_intron	12388225	12388322	-	asmbl_50021	none	blat.proc3829891.chain_1537	1	STRG.9328.1,blat.proc3829891.chain_1531,blat.proc3829891.chain_1532,blat.proc3829891.chain_1533,blat.proc3829891.chain_1534,blat.proc3829891.chain_1535,blat.proc3829891.chain_1536,blat.proc3829891.chain_1538	8
scaffold_13	retained_exon	9337243	9337322	-	asmbl_9982,asmbl_9983,asmbl_9984	none	STRG.16186.1,STRG.16186.2,STRG.16186.3,blat.proc3829895.chain_952,blat.proc3829895.chain_954	5	STRG.16186.4	1
scaffold_12	ends_in_intron	9687111	9687111	-	asmbl_7818,asmbl_7819,asmbl_7820,asmbl_7823	none	STRG.14929.3,STRG.14929.4,STRG.14929.5,Trinity_GG_25344_c0_g1_i2,Trinity_GG_25344_c0_g1_i5,blat.proc3829893.chain_3332,blat.proc3829893.chain_3333,blat.proc3829893.chain_3334	8	STRG.14929.1,STRG.14929.2,Trinity_GG_25344_c0_g1_i1,blat.proc3829893.chain_3335	4
scaffold_6	alt_acceptor	10170460	10170461	+	asmbl_47199	none	STRG.7841.2	1	STRG.7841.1	1
scaffold_4	retained_exon	16481102	16481130	-	asmbl_41933	none	blat.proc3829889.chain_1290	1	STRG.5226.1,STRG.5226.3,blat.proc3829889.chain_1289,blat.proc3829889.chain_1292	4
scaffold_1	retained_exon	6283604	6283664	-	asmbl_340,asmbl_343,asmbl_348,asmbl_350,asmbl_351	none	STRG.425.1,STRG.425.3,STRG.425.4,blat.proc3829887.chain_328,blat.proc3829887.chain_334	5	STRG.425.2,blat.proc3829887.chain_330,blat.proc3829887.chain_333	3
scaffold_5	alternate_exon	18697442	18698530	-	asmbl_46233	none	blat.proc3829889.chain_2984	1	STRG.6987.2,STRG.6987.3	2
scaffold_12	retained_intron	12288575	12288996	-	asmbl_7986,asmbl_7988,asmbl_7991	none	STRG.15114.1,STRG.15114.2,STRG.15114.6	3	STRG.15114.3,STRG.15114.4	2
scaffold_2	spliced_intron	15700571	15700762	+	asmbl_25095,asmbl_25096,asmbl_25097	none	STRG.2526.1,STRG.2526.2,blat.proc3829871.chain_2673,blat.proc3829871.chain_2676	4	Trinity_GG_1414_c0_g1_i4,blat.proc3829871.chain_2675	2
scaffold_6	spliced_intron	7171271	7171397	+	asmbl_46988,asmbl_46989,asmbl_46990,asmbl_46991	none	STRG.7621.1,STRG.7621.3,STRG.7621.4,blat.proc3829873.chain_3739	4	STRG.7621.2,Trinity_GG_4175_c0_g1_i3,blat.proc3829873.chain_3738	3
scaffold_27	skipped_exon	1986699	1987064	+	asmbl_36020	none	STRG.28663.2,blat.proc3829885.chain_1704	2	STRG.28663.1,Trinity_GG_15865_c1_g1_i3,blat.proc3829885.chain_1702,blat.proc3829885.chain_1703	4
scaffold_19	retained_exon	13233721	13233855	-	asmbl_21827	none	STRG.22682.1,blat.proc3829897.chain_3356	2	STRG.22682.3,blat.proc3829897.chain_3357	2
scaffold_15	starts_in_intron	6960714	6960714	+	asmbl_14215	none	blat.proc3829879.chain_2930	1	STRG.18295.1,STRG.18295.2,blat.proc3829879.chain_2933	3
scaffold_2	skipped_exon	13393860	13394379	-	asmbl_23527	none	STRG.2356.2	1	STRG.2356.1,Trinity_GG_18330_c0_g1_i1,blat.proc3829887.chain_2245	3
scaffold_14	skipped_exon	219174	220726	-	asmbl_12787,asmbl_12788,asmbl_12789,asmbl_12790	none	STRG.16705.2,STRG.16705.3,STRG.16705.4,blat.proc3829895.chain_1397,blat.proc3829895.chain_1398,blat.proc3829895.chain_1399	6	STRG.16705.1,blat.proc3829895.chain_1395	2
scaffold_2	alt_donor	16861216	16861217	+	asmbl_25182	none	STRG.2599.2,blat.proc3829871.chain_2831	2	STRG.2599.1,blat.proc3829871.chain_2828	2
scaffold_19	skipped_exon	12431776	12432497	+	asmbl_22603,asmbl_22607,asmbl_22610,asmbl_22611	none	STRG.22558.1,blat.proc3829881.chain_3515,blat.proc3829881.chain_3517,blat.proc3829881.chain_3519,blat.proc3829881.chain_3520	5	blat.proc3829881.chain_3516,blat.proc3829881.chain_3518	2
scaffold_7	starts_in_intron	5097064	5097064	+	asmbl_50667	none	Trinity_GG_4865_c0_g2_i1,blat.proc3829875.chain_1258	2	STRG.8843.1,blat.proc3829875.chain_1257	2
scaffold_17	retained_exon	13087497	13087527	+	asmbl_18437	none	STRG.20800.2,blat.proc3829881.chain_1649,blat.proc3829881.chain_1650	3	STRG.20800.1,blat.proc3829881.chain_1648	2
scaffold_1	alternate_exon	18742564	18743131	-	asmbl_1121	none	STRG.1303.2	1	STRG.1303.1	1
scaffold_3	spliced_intron	17849572	17849654	-	asmbl_39525	none	STRG.4009.2	1	STRG.4009.1,blat.proc3829889.chain_81	2
scaffold_22	alt_acceptor	10985986	10985987	-	asmbl_30406	none	STRG.25414.4	1	STRG.25414.2,blat.proc3829899.chain_2492,blat.proc3829899.chain_2493	3
scaffold_27	alternate_exon	625614	626798	-	asmbl_36655	none	STRG.28563.3,blat.proc3829901.chain_1754	2	Trinity_GG_32986_c0_g1_i1,blat.proc3829901.chain_1753	2
scaffold_24	retained_intron	6225543	6225855	-	asmbl_32929,asmbl_32931,asmbl_32932,asmbl_32937,asmbl_32938,asmbl_32940	none	STRG.26664.2,blat.proc3829899.chain_3687,blat.proc3829899.chain_3690,blat.proc3829899.chain_3693,blat.proc3829899.chain_3695,blat.proc3829899.chain_3696	6	STRG.26664.1,STRG.26664.3,Trinity_GG_31899_c0_g1_i6,blat.proc3829899.chain_3686,blat.proc3829899.chain_3688	5
scaffold_22	spliced_intron	11544135	11544174	+	asmbl_29696	none	blat.proc3829883.chain_2362	1	STRG.25485.2,STRG.25485.3	2
scaffold_11	retained_exon	15711620	15711750	+	asmbl_6106,asmbl_6107	none	STRG.14304.1,blat.proc3829877.chain_2782,blat.proc3829877.chain_2783	3	blat.proc3829877.chain_2784	1
scaffold_7	spliced_intron	13204822	13204912	+	asmbl_51195,asmbl_51197,asmbl_51198	none	STRG.9419.1,STRG.9419.2,STRG.9419.3,blat.proc3829875.chain_1853,blat.proc3829875.chain_1856	5	Trinity_GG_5219_c0_g1_i8,blat.proc3829875.chain_1851,blat.proc3829875.chain_1854	3
scaffold_15	spliced_intron	2718469	2718646	-	asmbl_15042	none	STRG.18045.1,blat.proc3829895.chain_2786	2	STRG.18045.2,Trinity_GG_27160_c0_g1_i2,blat.proc3829895.chain_2787	3
scaffold_12	spliced_intron	7275468	7275640	-	asmbl_7692,asmbl_7693,asmbl_7697	none	STRG.14787.1,STRG.14787.2,STRG.14787.3,Trinity_GG_25259_c0_g1_i1,Trinity_GG_25259_c0_g1_i3,blat.proc3829893.chain_3176,blat.proc3829893.chain_3177	7	Trinity_GG_25259_c0_g1_i2,blat.proc3829893.chain_3175	2
scaffold_6	retained_intron	7185172	7185279	-	asmbl_48416	none	STRG.7616.2,blat.proc3829889.chain_3621	2	STRG.7616.1,blat.proc3829889.chain_3622,blat.proc3829889.chain_3623	3
scaffold_4	spliced_intron	13762275	13762795	-	asmbl_41748,asmbl_41749,asmbl_41750	none	STRG.4997.1,STRG.4997.2,blat.proc3829889.chain_1048,blat.proc3829889.chain_1049,blat.proc3829889.chain_1050	5	blat.proc3829889.chain_1051	1
scaffold_27	alt_acceptor	2796585	2796586	+	asmbl_36069,asmbl_36073	none	STRG.28740.1,blat.proc3829885.chain_1811	2	blat.proc3829885.chain_1813	1
scaffold_2	spliced_intron	7775380	7775866	-	asmbl_23297,asmbl_23298	none	STRG.2074.1,STRG.2074.2,blat.proc3829887.chain_1981,blat.proc3829887.chain_1982	4	STRG.2074.3,blat.proc3829887.chain_1984	2
scaffold_20	alt_donor	9965474	9965475	-	asmbl_26989	none	STRG.23526.2,blat.proc3829899.chain_552	2	STRG.23526.1,blat.proc3829899.chain_551	2
scaffold_4	alt_acceptor	14285621	14285622	-	asmbl_41784,asmbl_41785	none	STRG.5038.3,STRG.5038.4	2	STRG.5038.1,STRG.5038.2,blat.proc3829889.chain_1087,blat.proc3829889.chain_1088	4
scaffold_12	starts_in_intron	9150347	9150347	+	asmbl_8820	none	STRG.14908.2,Trinity_GG_8256_c1_g1_i2,blat.proc3829877.chain_3442	3	STRG.14908.1,blat.proc3829877.chain_3438,blat.proc3829877.chain_3441	3
scaffold_27	alt_acceptor	951093	951094	-	asmbl_36681	none	STRG.28570.1,blat.proc3829901.chain_1765	2	STRG.28570.2	1
scaffold_14	retained_exon	9272349	9272558	-	asmbl_13347	none	blat.proc3829895.chain_1994,blat.proc3829895.chain_1999	2	STRG.17323.3	1
scaffold_14	retained_intron	7297974	7298196	+	asmbl_12126	none	Trinity_GG_9423_c1_g1_i1,blat.proc3829879.chain_1857	2	STRG.17153.1,STRG.17153.2,STRG.17153.3,blat.proc3829879.chain_1852,blat.proc3829879.chain_1853,blat.proc3829879.chain_1854,blat.proc3829879.chain_1855,blat.proc3829879.chain_1856	8
scaffold_6	retained_intron	12116976	12117069	+	asmbl_47310	none	STRG.7978.4,Trinity_GG_4362_c0_g1_i2,blat.proc3829875.chain_360	3	STRG.7978.3,Trinity_GG_4362_c0_g1_i5,blat.proc3829875.chain_359	3
scaffold_8	skipped_exon	16502745	16503680	-	asmbl_53406,asmbl_53411,asmbl_53413,asmbl_53414,asmbl_53415,asmbl_53416,asmbl_53418,asmbl_53419,asmbl_53421,asmbl_53422,asmbl_53424,asmbl_53425,asmbl_53427,asmbl_53429,asmbl_53430	none	STRG.10621.1,STRG.10621.2,STRG.10621.3,STRG.10621.4,Trinity_GG_22960_c0_g1_i18,Trinity_GG_22960_c0_g1_i19,Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2857,blat.proc3829891.chain_2860,blat.proc3829891.chain_2862,blat.proc3829891.chain_2863,blat.proc3829891.chain_2864,blat.proc3829891.chain_2867,blat.proc3829891.chain_2868,blat.proc3829891.chain_2869,blat.proc3829891.chain_2870,blat.proc3829891.chain_2871,blat.proc3829891.chain_2872	22	STRG.10621.5,Trinity_GG_22960_c0_g1_i9,blat.proc3829891.chain_2858,blat.proc3829891.chain_2859,blat.proc3829891.chain_2865	5
scaffold_25	retained_intron	4458047	4458215	+	asmbl_33503	none	Trinity_GG_15106_c2_g1_i1,blat.proc3829885.chain_427	2	STRG.27362.1,blat.proc3829885.chain_428	2
scaffold_27	alternate_exon	5061307	5061363	-	asmbl_36940,asmbl_36941	none	Trinity_GG_33207_c0_g1_i1,Trinity_GG_33207_c0_g1_i3,blat.proc3829901.chain_2088,blat.proc3829901.chain_2089	4	STRG.28916.1,STRG.28916.2	2
scaffold_2	spliced_intron	5392157	5392284	-	asmbl_23173,asmbl_23174,asmbl_23175	none	STRG.1948.1,STRG.1948.2,blat.proc3829887.chain_1756,blat.proc3829887.chain_1757	4	blat.proc3829887.chain_1758	1
scaffold_1	retained_intron	14333858	14334027	-	asmbl_895,asmbl_896	none	STRG.1029.2,STRG.1029.3,blat.proc3829887.chain_930,blat.proc3829887.chain_931	4	STRG.1029.1,blat.proc3829887.chain_929	2
scaffold_22	retained_exon	9720834	9721808	+	asmbl_29599	none	STRG.25292.1,blat.proc3829883.chain_2231	2	STRG.25292.3	1
scaffold_14	skipped_exon	11220457	11221809	-	asmbl_13439	none	STRG.17441.1,blat.proc3829895.chain_2153	2	blat.proc3829895.chain_2152	1
scaffold_1	alternate_exon	12940583	12940661	-	asmbl_785	none	STRG.923.2,blat.proc3829887.chain_784	2	STRG.923.3,STRG.923.4,blat.proc3829887.chain_785	3
scaffold_22	ends_in_intron	4570828	4570828	+	asmbl_29311	none	Trinity_GG_13743_c0_g2_i1,blat.proc3829883.chain_1909	2	STRG.24870.1,blat.proc3829883.chain_1908	2
scaffold_20	starts_in_intron	9816985	9816985	+	asmbl_26059	none	Trinity_GG_12984_c0_g1_i2,blat.proc3829883.chain_602	2	STRG.23513.1,blat.proc3829883.chain_603	2
scaffold_17	starts_in_intron	8876511	8876511	+	asmbl_18165	none	Trinity_GG_11233_c0_g1_i2,blat.proc3829881.chain_1302	2	STRG.20496.1,STRG.20496.2,blat.proc3829881.chain_1303,blat.proc3829881.chain_1304	4
scaffold_8	ends_in_intron	8273000	8273000	-	asmbl_52943	none	Trinity_GG_22659_c0_g1_i5,blat.proc3829891.chain_2269	2	STRG.10099.1,STRG.10099.2,blat.proc3829891.chain_2270,blat.proc3829891.chain_2272	4
scaffold_16	alt_donor	14626796	14626797	+	asmbl_17494,asmbl_17495	none	STRG.19842.1,Trinity_GG_10867_c0_g1_i1,Trinity_GG_10867_c0_g1_i2,blat.proc3829881.chain_684,blat.proc3829881.chain_685	5	STRG.19842.2	1
scaffold_23	alt_donor	7678008	7678009	-	asmbl_31761	none	STRG.26059.1	1	STRG.26059.2	1
scaffold_7	starts_in_intron	8327416	8327416	-	asmbl_49820	none	blat.proc3829891.chain_1317	1	STRG.9060.1,STRG.9060.2,blat.proc3829891.chain_1314,blat.proc3829891.chain_1315,blat.proc3829891.chain_1318	5
scaffold_15	alt_acceptor	15414263	15414264	+	asmbl_14727	none	Trinity_GG_10387_c0_g1_i3,blat.proc3829879.chain_3554	2	STRG.18922.3,STRG.18922.6,blat.proc3829879.chain_3550,blat.proc3829879.chain_3553,blat.proc3829879.chain_3557	5
scaffold_14	spliced_intron	3152638	3152817	+	asmbl_11879,asmbl_11880,asmbl_11881,asmbl_11883,asmbl_11885,asmbl_11886,asmbl_11893,asmbl_11895,asmbl_11896,asmbl_11898	none	STRG.16893.1,STRG.16893.2,STRG.16893.3,blat.proc3829879.chain_1625,blat.proc3829879.chain_1626,blat.proc3829879.chain_1628,blat.proc3829879.chain_1630,blat.proc3829879.chain_1631,blat.proc3829879.chain_1632,blat.proc3829879.chain_1634,blat.proc3829879.chain_1635,blat.proc3829879.chain_1638	12	blat.proc3829879.chain_1629,blat.proc3829879.chain_1636	2
scaffold_13	alt_donor	7997256	7997257	-	asmbl_9885,asmbl_9886	none	STRG.16065.1,STRG.16065.2,blat.proc3829895.chain_788,blat.proc3829895.chain_789	4	STRG.16065.3,blat.proc3829895.chain_785,blat.proc3829895.chain_787	3
scaffold_13	starts_in_intron	7718221	7718221	-	asmbl_9865,asmbl_9866	none	blat.proc3829895.chain_749,blat.proc3829895.chain_751	2	STRG.16043.1,STRG.16043.2,blat.proc3829895.chain_748,blat.proc3829895.chain_750	4
scaffold_8	retained_intron	12560537	12560677	+	asmbl_52311	none	STRG.10419.2	1	STRG.10419.1,Trinity_GG_5777_c0_g1_i1,blat.proc3829875.chain_2890	3
scaffold_19	retained_intron	11470827	11471462	-	asmbl_21604,asmbl_21606	none	STRG.22470.1,STRG.22470.2,blat.proc3829897.chain_3161,blat.proc3829897.chain_3163	4	STRG.22470.4,blat.proc3829897.chain_3162	2
scaffold_15	starts_in_intron	1593942	1593942	+	asmbl_13963	none	blat.proc3829879.chain_2641	1	STRG.17950.1,blat.proc3829879.chain_2642	2
scaffold_9	alternate_exon	18387706	18389638	+	asmbl_54638,asmbl_54639	none	STRG.11879.1,STRG.11879.3	2	blat.proc3829877.chain_595	1
scaffold_9	spliced_intron	8028814	8028894	-	asmbl_55080,asmbl_55081	none	STRG.11218.1,STRG.11218.2,blat.proc3829891.chain_3379	3	blat.proc3829891.chain_3378	1
scaffold_17	alt_acceptor	11568153	11568154	+	asmbl_18359	none	STRG.20693.3	1	STRG.20693.4	1
scaffold_16	alt_acceptor	11291579	11291580	+	asmbl_17375,asmbl_17376	none	STRG.19649.2,STRG.19649.3	2	STRG.19649.1,blat.proc3829881.chain_537	2
scaffold_26	alternate_exon	423394	425874	+	asmbl_35209	none	STRG.27850.2,blat.proc3829885.chain_855	2	STRG.27851.1	1
scaffold_24	alt_acceptor	879830	879831	+	asmbl_32063	none	STRG.26351.3	1	STRG.26351.2	1
scaffold_7	spliced_intron	8842324	8844151	+	asmbl_50947	none	STRG.9123.2,blat.proc3829875.chain_1578	2	STRG.9123.1,blat.proc3829875.chain_1575,blat.proc3829875.chain_1576,blat.proc3829875.chain_1577	4
scaffold_6	alternate_exon	12206415	12207500	+	asmbl_47321	none	Trinity_GG_4376_c0_g1_i1,blat.proc3829875.chain_386	2	STRG.7982.2,Trinity_GG_4376_c0_g1_i3,blat.proc3829875.chain_384	3
scaffold_13	starts_in_intron	1532231	1532231	+	asmbl_10536	none	Trinity_GG_8539_c0_g1_i1,blat.proc3829879.chain_233	2	STRG.15501.1,Trinity_GG_8539_c0_g1_i2,blat.proc3829879.chain_232	3
scaffold_11	alt_acceptor	16613178	16613179	-	asmbl_7211	none	STRG.14335.1,blat.proc3829893.chain_2677	2	STRG.14335.2,blat.proc3829893.chain_2678	2
scaffold_24	retained_exon	9592962	9593059	-	asmbl_33130	none	STRG.26924.3	1	STRG.26924.2	1
scaffold_2	alt_donor	4006910	4006911	-	asmbl_23061	none	STRG.1838.1,Trinity_GG_18041_c0_g1_i1,blat.proc3829887.chain_1692	3	STRG.1838.2	1
scaffold_8	alt_donor	2856635	2856636	-	asmbl_52715	none	STRG.9803.2,blat.proc3829891.chain_1938	2	STRG.9803.1,blat.proc3829891.chain_1939	2
scaffold_4	spliced_intron	19591656	19591710	-	asmbl_42209	none	blat.proc3829889.chain_1636	1	STRG.5545.1	1
scaffold_5	alternate_exon	10534506	10534616	-	asmbl_45744	none	STRG.6332.3,blat.proc3829889.chain_2349	2	STRG.6332.2,blat.proc3829889.chain_2348	2
scaffold_12	retained_intron	9506497	9506614	+	asmbl_8831	none	blat.proc3829877.chain_3374	1	STRG.14923.1,blat.proc3829877.chain_3373	2
scaffold_14	retained_intron	4116590	4116724	+	asmbl_11948,asmbl_11949	none	STRG.16951.3,STRG.16951.5,Trinity_GG_9333_c0_g1_i3,Trinity_GG_9333_c0_g1_i4,blat.proc3829879.chain_1686,blat.proc3829879.chain_1688	6	STRG.16951.1,STRG.16951.2,STRG.16951.4,Trinity_GG_9333_c0_g1_i1,Trinity_GG_9333_c0_g1_i5,Trinity_GG_9333_c0_g1_i7,blat.proc3829879.chain_1689,blat.proc3829879.chain_1690,blat.proc3829879.chain_1691	9
scaffold_7	retained_intron	13198531	13198748	-	asmbl_50113,asmbl_50116,asmbl_50117	none	blat.proc3829891.chain_1694,blat.proc3829891.chain_1695,blat.proc3829891.chain_1698	3	STRG.9418.1,STRG.9418.3,blat.proc3829891.chain_1691,blat.proc3829891.chain_1692,blat.proc3829891.chain_1697	5
scaffold_7	retained_intron	12058955	12059038	+	asmbl_51090	none	Trinity_GG_5143_c0_g1_i8,blat.proc3829875.chain_1724	2	STRG.9294.1,Trinity_GG_5143_c0_g1_i2,blat.proc3829875.chain_1722,blat.proc3829875.chain_1723	4
scaffold_5	spliced_intron	15528913	15529261	-	asmbl_46074	none	blat.proc3829889.chain_2805	1	STRG.6733.1,Trinity_GG_20799_c0_g1_i2,blat.proc3829889.chain_2806	3
scaffold_11	alt_donor	7886071	7886072	+	asmbl_5655,asmbl_5658	none	STRG.13780.1,Trinity_GG_7587_c0_g1_i1,Trinity_GG_7587_c0_g1_i4,blat.proc3829877.chain_2253,blat.proc3829877.chain_2255	5	STRG.13780.2,STRG.13780.3,Trinity_GG_7587_c0_g1_i3,blat.proc3829877.chain_2254	4
scaffold_13	starts_in_intron	904551	904551	-	asmbl_9343,asmbl_9347	none	Trinity_GG_25690_c0_g1_i3,blat.proc3829895.chain_216,blat.proc3829895.chain_218	3	STRG.15448.1,STRG.15448.3,STRG.15448.4,STRG.15448.5,STRG.15448.6,blat.proc3829895.chain_212,blat.proc3829895.chain_213,blat.proc3829895.chain_214,blat.proc3829895.chain_215	9
scaffold_1	spliced_intron	1250261	1250375	-	asmbl_56	none	STRG.75.1,Trinity_GG_17023_c1_g1_i1,blat.proc3829885.chain_3675	3	STRG.75.2,Trinity_GG_17023_c1_g1_i2,blat.proc3829885.chain_3674	3
scaffold_21	starts_in_intron	4972026	4972026	+	asmbl_28569	none	blat.proc3829883.chain_1180	1	STRG.24026.1,STRG.24026.2,blat.proc3829883.chain_1182	3
scaffold_19	alt_acceptor	11902327	11902328	-	asmbl_21650	none	STRG.22500.2,blat.proc3829897.chain_3180	2	STRG.22500.1	1
scaffold_6	retained_intron	8172324	8172399	-	asmbl_48471,asmbl_48472,asmbl_48473,asmbl_48474	none	Trinity_GG_21366_c0_g1_i6,blat.proc3829889.chain_3718,blat.proc3829889.chain_3725	3	STRG.7691.1,STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3715,blat.proc3829889.chain_3716,blat.proc3829889.chain_3724	6
scaffold_5	starts_in_intron	2558338	2558338	+	asmbl_43847	none	blat.proc3829873.chain_1911	1	STRG.5771.1,blat.proc3829873.chain_1909	2
scaffold_5	alternate_exon	17194625	17194965	+	asmbl_44803	none	STRG.6883.2	1	STRG.6883.3,blat.proc3829873.chain_2980	2
scaffold_4	alt_acceptor	3269890	3269891	+	asmbl_42490,asmbl_42491	none	STRG.4252.2,blat.proc3829873.chain_517	2	STRG.4252.1,blat.proc3829873.chain_514,blat.proc3829873.chain_515,blat.proc3829873.chain_516	4
scaffold_15	spliced_intron	15416433	15416546	-	asmbl_15794	none	STRG.18923.5,blat.proc3829895.chain_3621	2	blat.proc3829895.chain_3620	1
scaffold_10	retained_intron	8908482	8908686	+	asmbl_4614	none	STRG.12627.1,blat.proc3829877.chain_1187	2	blat.proc3829877.chain_1188	1
scaffold_17	spliced_intron	8543163	8543246	+	asmbl_18120,asmbl_18121,asmbl_18122	none	STRG.20458.1,STRG.20458.2,STRG.20458.3,blat.proc3829881.chain_1287,blat.proc3829881.chain_1288	5	blat.proc3829881.chain_1289	1
scaffold_15	starts_in_intron	14325536	14325536	-	asmbl_15734,asmbl_15735	none	blat.proc3829895.chain_3600,blat.proc3829895.chain_3605	2	STRG.18855.3,blat.proc3829895.chain_3603	2
scaffold_1	starts_in_intron	11426120	11426120	+	asmbl_2091	none	STRG.751.3,Trinity_GG_463_c0_g1_i3,blat.proc3829871.chain_804	3	STRG.751.1,STRG.751.2,blat.proc3829871.chain_801,blat.proc3829871.chain_803	4
scaffold_9	alt_acceptor	11876500	11876501	+	asmbl_54372	none	Trinity_GG_6418_c0_g1_i2,blat.proc3829877.chain_280	2	STRG.11498.1	1
scaffold_2	spliced_intron	15266137	15266197	+	asmbl_25020,asmbl_25024,asmbl_25025,asmbl_25026,asmbl_25027,asmbl_25029	none	STRG.2480.1,blat.proc3829871.chain_2514,blat.proc3829871.chain_2516,blat.proc3829871.chain_2517,blat.proc3829871.chain_2518,blat.proc3829871.chain_2519,blat.proc3829871.chain_2522	7	STRG.2480.2,STRG.2480.3,blat.proc3829871.chain_2515,blat.proc3829871.chain_2520,blat.proc3829871.chain_2523	5
scaffold_25	alt_acceptor	4533836	4533837	-	asmbl_34188,asmbl_34190	none	STRG.27373.1,Trinity_GG_32322_c0_g1_i3,Trinity_GG_32322_c0_g1_i4,blat.proc3829901.chain_640,blat.proc3829901.chain_642	5	STRG.27373.2	1
scaffold_7	alt_donor	31313	31314	+	asmbl_50416	none	STRG.8577.1	1	STRG.8577.2,blat.proc3829875.chain_1007	2
scaffold_15	alt_acceptor	15355142	15355143	+	asmbl_14705,asmbl_14711	none	STRG.18909.2,blat.proc3829879.chain_3499,blat.proc3829879.chain_3504	3	STRG.18909.3,Trinity_GG_10368_c0_g1_i7,blat.proc3829879.chain_3500,blat.proc3829879.chain_3505	4
scaffold_10	alt_acceptor	17701191	17701192	+	asmbl_5070	none	blat.proc3829893.chain_1652	1	blat.proc3829893.chain_1653	1
scaffold_12	alt_acceptor	4345644	4345645	+	asmbl_8563	none	STRG.14606.2,blat.proc3829877.chain_3131	2	STRG.14606.1	1
scaffold_20	alternate_exon	11673843	11673914	-	asmbl_27101	none	STRG.23656.1,blat.proc3829899.chain_652	2	blat.proc3829899.chain_651	1
scaffold_18	starts_in_intron	3792221	3792221	-	asmbl_19814	none	blat.proc3829897.chain_2084	1	STRG.21185.1,STRG.21185.3,blat.proc3829897.chain_2077,blat.proc3829897.chain_2078,blat.proc3829897.chain_2079,blat.proc3829897.chain_2080,blat.proc3829897.chain_2083	7
scaffold_14	alternate_exon	408814	408900	-	asmbl_12813	none	STRG.16723.1	1	Trinity_GG_26372_c0_g1_i2,blat.proc3829895.chain_1426	2
scaffold_9	spliced_intron	17454872	17454904	+	asmbl_54609	none	STRG.11830.2	1	STRG.11830.1,Trinity_GG_6564_c0_g1_i1,Trinity_GG_6564_c0_g1_i2,blat.proc3829877.chain_513	4
scaffold_20	alt_donor	7185347	7185348	-	asmbl_26803,asmbl_26806	none	STRG.23274.1,blat.proc3829899.chain_303,blat.proc3829899.chain_304	3	blat.proc3829899.chain_302,blat.proc3829899.chain_306	2
scaffold_12	spliced_intron	10175034	10175126	+	asmbl_8873	none	STRG.14974.2	1	STRG.14974.1,Trinity_GG_8283_c0_g1_i1,blat.proc3829877.chain_3491	3
scaffold_3	skipped_exon	13700565	13702785	+	asmbl_40409	none	STRG.3712.1,blat.proc3829873.chain_129	2	STRG.3712.2,blat.proc3829873.chain_130	2
scaffold_6	starts_in_intron	12054008	12054008	-	asmbl_48719	none	blat.proc3829891.chain_247	1	STRG.7973.1,blat.proc3829891.chain_249	2
scaffold_4	alt_acceptor	17631820	17631821	-	asmbl_42043	none	STRG.5362.2	1	STRG.5362.1,STRG.5362.3,blat.proc3829889.chain_1350	3
scaffold_6	alt_acceptor	13193088	13193089	+	asmbl_47421,asmbl_47423,asmbl_47425	none	STRG.8068.1,blat.proc3829875.chain_429,blat.proc3829875.chain_430,blat.proc3829875.chain_432	4	blat.proc3829875.chain_428	1
scaffold_2	skipped_exon	2878799	2879496	-	asmbl_22954,asmbl_22958,asmbl_22963	none	STRG.1733.1,STRG.1733.3,blat.proc3829887.chain_1492,blat.proc3829887.chain_1493,blat.proc3829887.chain_1497	5	STRG.1733.2,STRG.1733.4,blat.proc3829887.chain_1494,blat.proc3829887.chain_1496,blat.proc3829887.chain_1498,blat.proc3829887.chain_1500	6
scaffold_7	alternate_exon	4048172	4048275	-	asmbl_49660	none	STRG.8793.2	1	STRG.8793.1,STRG.8793.3,blat.proc3829891.chain_1137	3
scaffold_16	alternate_exon	12017960	12018115	+	asmbl_17428	none	Trinity_GG_10822_c0_g1_i3,blat.proc3829881.chain_608	2	STRG.19717.1	1
scaffold_6	alternate_exon	8933800	8937210	+	asmbl_47117	none	STRG.7765.3	1	STRG.7765.4,Trinity_GG_4211_c2_g1_i1,blat.proc3829875.chain_44	3
scaffold_26	spliced_intron	9781848	9782129	+	asmbl_35791	none	STRG.28500.1,Trinity_GG_15744_c0_g1_i1,blat.proc3829885.chain_1481	3	Trinity_GG_15744_c0_g1_i2,blat.proc3829885.chain_1480	2
scaffold_10	skipped_exon	17682892	17684424	+	asmbl_5062	none	STRG.13207.1	1	STRG.13207.2	1
scaffold_1	spliced_intron	1349041	1349123	+	asmbl_1473	none	STRG.77.1,Trinity_GG_58_c0_g1_i2,blat.proc3829871.chain_106	3	STRG.77.2	1
scaffold_21	retained_intron	2654346	2654440	-	asmbl_27510,asmbl_27512,asmbl_27513,asmbl_27515	none	STRG.23889.2,STRG.23889.3,Trinity_GG_30293_c0_g1_i8,blat.proc3829899.chain_908,blat.proc3829899.chain_909,blat.proc3829899.chain_913,blat.proc3829899.chain_914	7	STRG.23889.4	1
scaffold_2	retained_intron	7776424	7777128	+	asmbl_24603	none	Trinity_GG_1175_c0_g1_i2,blat.proc3829871.chain_2157	2	STRG.2073.1,Trinity_GG_1175_c0_g1_i1,blat.proc3829871.chain_2158	3
scaffold_1	alt_acceptor	22370561	22370562	+	asmbl_2678,asmbl_2680	none	STRG.1490.3,STRG.1490.4	2	STRG.1490.1,STRG.1490.2,STRG.1490.5	3
scaffold_6	spliced_intron	579872	580943	+	asmbl_46621	none	STRG.7110.3	1	STRG.7110.2,Trinity_GG_3925_c0_g1_i1,blat.proc3829873.chain_3267	3
scaffold_7	starts_in_intron	11953324	11953324	+	asmbl_51080	none	blat.proc3829875.chain_1743	1	STRG.9289.1,blat.proc3829875.chain_1744	2
scaffold_24	alternate_exon	8895974	8896183	-	asmbl_33109	none	blat.proc3829901.chain_194	1	STRG.26892.1	1
scaffold_1	spliced_intron	5964053	5964145	+	asmbl_1795,asmbl_1797	none	STRG.396.1,STRG.396.2,blat.proc3829871.chain_454	3	Trinity_GG_257_c0_g1_i3,blat.proc3829871.chain_457	2
scaffold_11	alternate_exon	4751421	4751475	+	asmbl_5478	none	STRG.13563.2	1	blat.proc3829877.chain_2008	1
scaffold_2	alt_acceptor	7042358	7042359	+	asmbl_24551,asmbl_24552,asmbl_24553	none	Trinity_GG_1152_c0_g1_i2,Trinity_GG_1152_c0_g1_i3,Trinity_GG_1152_c0_g1_i5,blat.proc3829871.chain_2110,blat.proc3829871.chain_2111,blat.proc3829871.chain_2112	6	STRG.2043.1,Trinity_GG_1152_c0_g1_i1,blat.proc3829871.chain_2113	3
scaffold_26	spliced_intron	9781574	9781736	+	asmbl_35791	none	STRG.28500.1,Trinity_GG_15744_c0_g1_i1,blat.proc3829885.chain_1481	3	Trinity_GG_15744_c0_g1_i2,blat.proc3829885.chain_1480	2
scaffold_1	alt_acceptor	14422299	14422300	-	asmbl_922	none	STRG.1038.2	1	STRG.1038.1	1
scaffold_27	starts_in_intron	5793919	5793919	-	asmbl_36984	none	blat.proc3829901.chain_2136	1	STRG.28963.1,STRG.28963.2,blat.proc3829901.chain_2137	3
scaffold_14	alt_acceptor	2463944	2463945	-	asmbl_12936,asmbl_12937	none	STRG.16842.1,STRG.16842.2,blat.proc3829895.chain_1549	3	STRG.16842.4,blat.proc3829895.chain_1546	2
scaffold_26	starts_in_intron	9608449	9608449	+	asmbl_35767	none	Trinity_GG_15716_c0_g1_i4,blat.proc3829885.chain_1429	2	STRG.28493.1,STRG.28493.2,Trinity_GG_15716_c0_g1_i2,Trinity_GG_15716_c0_g1_i6,blat.proc3829885.chain_1426,blat.proc3829885.chain_1427	6
scaffold_32	starts_in_intron	9953	9953	-	asmbl_40901	none	blat.proc3829901.chain_3096	1	STRG.29996.1	1
scaffold_19	alt_donor	9556167	9556168	-	asmbl_21550	none	STRG.22378.1,blat.proc3829897.chain_3092	2	STRG.22378.2,blat.proc3829897.chain_3093	2
scaffold_2	alt_donor	18056029	18056030	-	asmbl_23782	none	STRG.2700.1,blat.proc3829887.chain_2524	2	STRG.2700.2	1
scaffold_1	starts_in_intron	1237609	1237609	+	asmbl_1463	none	Trinity_GG_55_c0_g1_i1,blat.proc3829871.chain_102	2	STRG.66.1,blat.proc3829871.chain_101	2
scaffold_1	spliced_intron	11269937	11270054	+	asmbl_2081	none	STRG.744.2	1	STRG.744.3	1
scaffold_18	spliced_intron	6425925	6426952	+	asmbl_20707	none	STRG.21358.1,Trinity_GG_11798_c0_g1_i1,blat.proc3829881.chain_2335	3	STRG.21358.2,Trinity_GG_11798_c0_g1_i2,blat.proc3829881.chain_2336	3
scaffold_14	retained_intron	11572188	11573625	-	asmbl_13482,asmbl_13486	none	STRG.17490.2,STRG.17490.3,Trinity_GG_26806_c0_g1_i8	3	STRG.17490.1,STRG.17490.4,blat.proc3829895.chain_2172,blat.proc3829895.chain_2179	4
scaffold_13	alternate_exon	8804969	8805239	-	asmbl_9939	none	Trinity_GG_26094_c0_g1_i4,blat.proc3829895.chain_939	2	blat.proc3829895.chain_942	1
scaffold_5	alternate_exon	11629010	11629028	-	asmbl_45803	none	blat.proc3829889.chain_2526	1	blat.proc3829889.chain_2524,blat.proc3829889.chain_2525,blat.proc3829889.chain_2528,blat.proc3829889.chain_2529	4
scaffold_17	alt_donor	13844643	13844644	-	asmbl_19428	none	STRG.20849.1	1	STRG.20849.2	1
scaffold_10	alternate_exon	924736	926154	-	asmbl_2930	none	STRG.11959.2	1	Trinity_GG_23671_c0_g1_i1,blat.proc3829893.chain_419	2
scaffold_3	retained_intron	17144659	17145212	+	asmbl_40618,asmbl_40619,asmbl_40620	none	STRG.3949.2,STRG.3949.3,Trinity_GG_2219_c0_g1_i2	3	STRG.3949.1,blat.proc3829873.chain_352	2
scaffold_10	skipped_exon	13284018	13285767	-	asmbl_3771,asmbl_3775	none	STRG.12910.2,blat.proc3829893.chain_1434,blat.proc3829893.chain_1436	3	STRG.12910.4,blat.proc3829893.chain_1433,blat.proc3829893.chain_1435	3
scaffold_21	spliced_intron	6118192	6118268	+	asmbl_28633	none	STRG.24134.1,blat.proc3829883.chain_1268	2	Trinity_GG_13367_c0_g1_i2,blat.proc3829883.chain_1269	2
scaffold_14	ends_in_intron	3366043	3366043	-	asmbl_12987	none	Trinity_GG_26487_c0_g1_i1,blat.proc3829895.chain_1617	2	STRG.16907.1,blat.proc3829895.chain_1618	2
scaffold_20	spliced_intron	9628124	9629033	+	asmbl_26026,asmbl_26027	none	STRG.23488.2,blat.proc3829883.chain_573	2	STRG.23488.1,STRG.23488.3,Trinity_GG_12972_c0_g1_i1,blat.proc3829883.chain_572,blat.proc3829883.chain_574,blat.proc3829883.chain_575	6
scaffold_1	alternate_exon	12166861	12167253	+	asmbl_2171	none	STRG.844.1	1	blat.proc3829871.chain_919,blat.proc3829871.chain_920	2
scaffold_1	starts_in_intron	14276057	14276057	+	asmbl_2347	none	Trinity_GG_617_c0_g1_i5,blat.proc3829871.chain_1109	2	STRG.1020.1,STRG.1020.2,STRG.1020.3,Trinity_GG_617_c0_g1_i1,Trinity_GG_617_c0_g1_i2,Trinity_GG_617_c0_g1_i4,blat.proc3829871.chain_1110,blat.proc3829871.chain_1111,blat.proc3829871.chain_1112	9
scaffold_19	alt_acceptor	12200143	12200144	-	asmbl_21680	none	STRG.22536.2	1	STRG.22536.1,Trinity_GG_29490_c0_g1_i2	2
scaffold_24	starts_in_intron	162957	162957	-	asmbl_32694	none	Trinity_GG_31713_c0_g1_i2,blat.proc3829899.chain_3376	2	STRG.26299.2,Trinity_GG_31713_c0_g1_i1,Trinity_GG_31713_c0_g1_i3,blat.proc3829899.chain_3374,blat.proc3829899.chain_3375	5
scaffold_2	alternate_exon	862960	863545	+	asmbl_24135	none	blat.proc3829871.chain_1609,blat.proc3829871.chain_1611	2	STRG.1560.3	1
scaffold_18	alt_acceptor	1877345	1877346	+	asmbl_20417	none	STRG.21065.3	1	STRG.21065.1,STRG.21065.2,blat.proc3829881.chain_1956	3
scaffold_10	skipped_exon	11595100	11596812	+	asmbl_4751	none	STRG.12807.2	1	STRG.12807.1	1
scaffold_19	starts_in_intron	8150286	8150286	+	asmbl_22301	none	STRG.22254.2,blat.proc3829881.chain_3165	2	STRG.22254.1,blat.proc3829881.chain_3166	2
scaffold_15	spliced_intron	400486	400509	+	asmbl_13916	none	STRG.17881.2	1	STRG.17881.1,Trinity_GG_9837_c1_g1_i1,blat.proc3829879.chain_2577	3
scaffold_17	spliced_intron	4186382	4186772	-	asmbl_18886	none	STRG.20157.3	1	STRG.20157.2,blat.proc3829897.chain_1125	2
scaffold_3	retained_intron	7972688	7972770	+	asmbl_40148	none	blat.proc3829871.chain_3495	1	STRG.3381.1,blat.proc3829871.chain_3494	2
scaffold_12	alternate_exon	14291833	14292199	-	asmbl_8136	none	STRG.15255.1	1	STRG.15255.2,blat.proc3829893.chain_3649	2
scaffold_3	ends_in_intron	11270158	11270158	+	asmbl_40289	none	Trinity_GG_2012_c0_g1_i1,blat.proc3829871.chain_3733	2	STRG.3548.2,Trinity_GG_2012_c0_g1_i3,blat.proc3829871.chain_3731	3
scaffold_15	spliced_intron	13324710	13324894	+	asmbl_14571,asmbl_14573,asmbl_14575,asmbl_14579,asmbl_14581,asmbl_14582	none	STRG.18763.1,Trinity_GG_10264_c0_g1_i2,Trinity_GG_10264_c0_g1_i4,blat.proc3829879.chain_3297,blat.proc3829879.chain_3298,blat.proc3829879.chain_3300,blat.proc3829879.chain_3301,blat.proc3829879.chain_3303	8	Trinity_GG_10264_c0_g1_i6,blat.proc3829879.chain_3296,blat.proc3829879.chain_3299,blat.proc3829879.chain_3302,blat.proc3829879.chain_3304	5
scaffold_8	alt_donor	18434352	18434353	+	asmbl_52552	none	STRG.10734.2	1	STRG.10734.1,blat.proc3829875.chain_3190	2
scaffold_20	alt_acceptor	6127896	6127897	-	asmbl_26734	none	STRG.23196.2	1	STRG.23196.1,blat.proc3829899.chain_209	2
scaffold_1	ends_in_intron	12756605	12756605	-	asmbl_765,asmbl_766	none	Trinity_GG_17461_c0_g1_i6,blat.proc3829887.chain_749,blat.proc3829887.chain_752	3	STRG.894.1,blat.proc3829887.chain_750	2
scaffold_3	spliced_intron	14259715	14259877	+	asmbl_40468	none	blat.proc3829873.chain_106	1	STRG.3764.1,STRG.3764.4,Trinity_GG_2074_c0_g1_i1,Trinity_GG_2074_c0_g1_i4,blat.proc3829873.chain_102,blat.proc3829873.chain_103,blat.proc3829873.chain_105	7
scaffold_16	alt_donor	7218097	7218098	-	asmbl_16353	none	STRG.19382.5	1	STRG.19382.1,STRG.19382.2,STRG.19382.3,STRG.19382.4,STRG.19382.6	5
scaffold_6	retained_exon	2744895	2744981	-	asmbl_48107	none	STRG.7260.1,Trinity_GG_21072_c0_g1_i1	2	blat.proc3829889.chain_3262	1
scaffold_23	spliced_intron	10938115	10938227	-	asmbl_31891	none	STRG.26279.3	1	Trinity_GG_31688_c0_g1_i4	1
scaffold_20	spliced_intron	11672168	11672271	-	asmbl_27099	none	STRG.23656.4,blat.proc3829899.chain_653	2	STRG.23656.2,blat.proc3829899.chain_654	2
scaffold_11	alt_acceptor	6608391	6608392	-	asmbl_6704	none	STRG.13692.2	1	STRG.13692.1,blat.proc3829893.chain_2146	2
scaffold_18	starts_in_intron	7647264	7647264	+	asmbl_20785,asmbl_20786	none	STRG.21454.1,STRG.21454.2,blat.proc3829881.chain_2423	3	Trinity_GG_11854_c0_g1_i1,blat.proc3829881.chain_2424	2
scaffold_12	spliced_intron	4753264	4753369	+	asmbl_8579	none	STRG.14640.2	1	Trinity_GG_8048_c0_g1_i5,blat.proc3829877.chain_3063	2
scaffold_24	retained_intron	8747124	8747465	+	asmbl_32447	none	STRG.26872.2,Trinity_GG_14810_c1_g1_i1,blat.proc3829883.chain_3683	3	STRG.26872.3	1
scaffold_14	retained_intron	12351303	12351424	+	asmbl_12408	none	blat.proc3829879.chain_2236	1	STRG.17560.3,blat.proc3829879.chain_2237	2
scaffold_26	retained_intron	5894602	5894720	-	asmbl_34915	none	Trinity_GG_32791_c0_g1_i6,blat.proc3829901.chain_1392	2	STRG.28281.1,STRG.28281.2,blat.proc3829901.chain_1395,blat.proc3829901.chain_1396,blat.proc3829901.chain_1397	5
scaffold_2	starts_in_intron	7214026	7214026	+	asmbl_24572,asmbl_24573,asmbl_24574	none	STRG.2054.2,STRG.2054.3,STRG.2054.4	3	STRG.2054.1	1
scaffold_20	spliced_intron	3440981	3441081	-	asmbl_26617	none	STRG.23036.2	1	STRG.23036.1,Trinity_GG_29863_c0_g1_i1,blat.proc3829899.chain_53	3
scaffold_23	alt_acceptor	5619810	5619811	-	asmbl_31645	none	STRG.25917.3,blat.proc3829899.chain_3025	2	STRG.25917.2,blat.proc3829899.chain_3024,blat.proc3829899.chain_3026	3
scaffold_1	retained_intron	3270179	3270864	-	asmbl_140	none	blat.proc3829887.chain_98	1	STRG.199.1,blat.proc3829887.chain_97,blat.proc3829887.chain_99	3
scaffold_3	ends_in_intron	13176922	13176922	+	asmbl_40393,asmbl_40394	none	STRG.3679.2,STRG.3679.3	2	blat.proc3829873.chain_79	1
scaffold_10	starts_in_intron	2719134	2719134	+	asmbl_4276,asmbl_4277	none	Trinity_GG_6735_c0_g1_i3,Trinity_GG_6735_c0_g1_i4,blat.proc3829877.chain_813,blat.proc3829877.chain_814	4	STRG.12081.1,STRG.12081.2,blat.proc3829877.chain_816,blat.proc3829877.chain_817	4
scaffold_19	starts_in_intron	6212187	6212187	+	asmbl_22201	none	STRG.22141.4,Trinity_GG_12238_c1_g1_i1,blat.proc3829881.chain_3091	3	STRG.22141.1,STRG.22141.2,STRG.22141.3,blat.proc3829881.chain_3088,blat.proc3829881.chain_3089,blat.proc3829881.chain_3090	6
scaffold_25	retained_intron	978574	978714	+	asmbl_33351	none	blat.proc3829885.chain_193	1	blat.proc3829885.chain_192,blat.proc3829885.chain_194	2
scaffold_6	alt_acceptor	15112287	15112288	+	asmbl_47594,asmbl_47596	none	STRG.8269.1,STRG.8269.2,blat.proc3829875.chain_672	3	STRG.8269.3	1
scaffold_28	alt_acceptor	5391041	5391042	+	asmbl_38285	none	blat.proc3829885.chain_2786	1	Trinity_GG_16450_c0_g1_i9,blat.proc3829885.chain_2787	2
scaffold_20	retained_exon	631162	631182	-	asmbl_26436	none	STRG.22751.1,blat.proc3829897.chain_3522	2	STRG.22751.2,blat.proc3829897.chain_3524	2
scaffold_5	retained_exon	5738079	5738209	+	asmbl_44029	none	blat.proc3829873.chain_2048	1	STRG.5984.3,blat.proc3829873.chain_2049	2
scaffold_13	alternate_exon	388062	388164	-	asmbl_9299	none	Trinity_GG_25648_c0_g1_i8,blat.proc3829895.chain_129	2	STRG.15422.1,blat.proc3829895.chain_130	2
scaffold_7	retained_intron	12452507	12452712	-	asmbl_50039	none	blat.proc3829891.chain_1611	1	STRG.9342.1,STRG.9342.2,Trinity_GG_22282_c1_g1_i7,Trinity_GG_22282_c1_g1_i9,blat.proc3829891.chain_1604,blat.proc3829891.chain_1605,blat.proc3829891.chain_1606,blat.proc3829891.chain_1607,blat.proc3829891.chain_1608,blat.proc3829891.chain_1614	10
scaffold_21	alt_acceptor	5134786	5134787	-	asmbl_27634,asmbl_27635,asmbl_27636	none	STRG.24046.1,STRG.24046.3,STRG.24046.4	3	STRG.24046.7	1
scaffold_6	alt_acceptor	2536167	2536168	+	asmbl_46709	none	STRG.7248.2	1	STRG.7248.1	1
scaffold_7	retained_intron	12082966	12083010	+	asmbl_51096,asmbl_51097,asmbl_51098	none	STRG.9310.1,Trinity_GG_5111_c0_g1_i1,Trinity_GG_5111_c0_g1_i2,Trinity_GG_5111_c0_g1_i3,blat.proc3829875.chain_1656,blat.proc3829875.chain_1657,blat.proc3829875.chain_1658,blat.proc3829875.chain_1660	8	STRG.9310.2	1
scaffold_9	spliced_intron	12436520	12436852	+	asmbl_54413	none	blat.proc3829877.chain_325	1	STRG.11546.1,Trinity_GG_6448_c0_g1_i1,blat.proc3829877.chain_326	3
scaffold_11	alt_acceptor	8984394	8984395	-	asmbl_6882	none	STRG.13910.1,blat.proc3829893.chain_2347	2	STRG.13910.2	1
scaffold_18	starts_in_intron	815388	815388	+	asmbl_20350	none	blat.proc3829881.chain_1867	1	STRG.20995.1,blat.proc3829881.chain_1864,blat.proc3829881.chain_1865,blat.proc3829881.chain_1868,blat.proc3829881.chain_1869	5
scaffold_1	spliced_intron	6215109	6215240	-	asmbl_328	none	STRG.416.1,Trinity_GG_17235_c1_g1_i2,blat.proc3829887.chain_288	3	STRG.416.2,Trinity_GG_17235_c1_g1_i1,blat.proc3829887.chain_287	3
scaffold_7	retained_intron	17685023	17685192	+	asmbl_51374	none	Trinity_GG_5317_c0_g1_i2,blat.proc3829875.chain_2045	2	STRG.9607.1,blat.proc3829875.chain_2044	2
scaffold_17	starts_in_intron	12200412	12200412	+	asmbl_18404	none	blat.proc3829881.chain_1577	1	STRG.20743.2,STRG.20743.3,blat.proc3829881.chain_1576	3
scaffold_1	spliced_intron	12338031	12338206	-	asmbl_712,asmbl_719	none	blat.proc3829887.chain_740,blat.proc3829887.chain_744	2	blat.proc3829887.chain_734,blat.proc3829887.chain_735,blat.proc3829887.chain_737,blat.proc3829887.chain_743	4
scaffold_9	skipped_exon	5276936	5279151	+	asmbl_53993	none	STRG.11095.3	1	STRG.11095.1	1
scaffold_4	alt_donor	19028785	19028786	-	asmbl_42153	none	STRG.5481.1,blat.proc3829889.chain_1540	2	STRG.5481.2,blat.proc3829889.chain_1541	2
scaffold_6	retained_intron	72768	72798	-	asmbl_47962,asmbl_47963	none	STRG.7058.1,STRG.7058.4	2	STRG.7058.2,STRG.7058.3	2
scaffold_8	alternate_exon	17301081	17301121	-	asmbl_53456	none	blat.proc3829891.chain_2804	1	STRG.10645.1,STRG.10645.2,STRG.10645.3,STRG.10645.4,blat.proc3829891.chain_2806,blat.proc3829891.chain_2807	6
scaffold_3	starts_in_intron	12421664	12421664	+	asmbl_40355	none	Trinity_GG_2043_c0_g1_i1	1	STRG.3634.1,STRG.3634.2,blat.proc3829873.chain_41,blat.proc3829873.chain_43	4
scaffold_26	alternate_exon	6706127	6706255	-	asmbl_34971,asmbl_34974,asmbl_34976	none	STRG.28358.3,blat.proc3829901.chain_1521,blat.proc3829901.chain_1525	3	STRG.28358.1,STRG.28358.2,blat.proc3829901.chain_1524	3
scaffold_1	starts_in_intron	5185177	5185177	-	asmbl_242	none	Trinity_GG_17187_c0_g1_i1,blat.proc3829887.chain_203	2	STRG.320.1,STRG.320.2,Trinity_GG_17187_c0_g1_i2,Trinity_GG_17187_c0_g1_i3,blat.proc3829887.chain_204,blat.proc3829887.chain_205	6
scaffold_9	retained_intron	9853059	9854248	+	asmbl_54248,asmbl_54250	none	STRG.11344.2,Trinity_GG_6307_c0_g1_i5,blat.proc3829877.chain_64,blat.proc3829877.chain_66	4	STRG.11344.1,blat.proc3829877.chain_63,blat.proc3829877.chain_67	3
scaffold_3	skipped_exon	14479533	14479788	+	asmbl_40489	none	STRG.3787.2,blat.proc3829873.chain_202	2	STRG.3787.1,blat.proc3829873.chain_203	2
scaffold_1	starts_in_intron	2782963	2782963	-	asmbl_132	none	blat.proc3829887.chain_74	1	STRG.172.1,STRG.172.2,blat.proc3829887.chain_73,blat.proc3829887.chain_75	4
scaffold_1	alt_acceptor	14528856	14528857	-	asmbl_939	none	blat.proc3829887.chain_932	1	STRG.1048.1,blat.proc3829887.chain_933	2
scaffold_17	alternate_exon	4001327	4002747	+	asmbl_17881,asmbl_17886	none	STRG.20145.3,blat.proc3829881.chain_988	2	STRG.20145.1,STRG.20145.2,STRG.20145.4,blat.proc3829881.chain_989,blat.proc3829881.chain_990,blat.proc3829881.chain_991,blat.proc3829881.chain_992	7
scaffold_1	retained_intron	10950202	10950931	+	asmbl_2026,asmbl_2028,asmbl_2029,asmbl_2030	none	STRG.713.2,STRG.713.4,blat.proc3829871.chain_748,blat.proc3829871.chain_750,blat.proc3829871.chain_753,blat.proc3829871.chain_754	6	STRG.713.3,blat.proc3829871.chain_749	2
scaffold_8	alt_donor	3218485	3218486	+	asmbl_51739	none	blat.proc3829875.chain_2322	1	STRG.9823.3,STRG.9823.5,Trinity_GG_5470_c1_g1_i2,blat.proc3829875.chain_2323	4
scaffold_27	alternate_exon	9094542	9097054	-	asmbl_37078	none	Trinity_GG_33295_c0_g1_i1,blat.proc3829901.chain_2217	2	STRG.29150.2,Trinity_GG_33295_c0_g1_i3,blat.proc3829901.chain_2218	3
scaffold_20	starts_in_intron	7208849	7208849	+	asmbl_25864	none	STRG.23279.2	1	STRG.23279.1,Trinity_GG_12855_c0_g1_i1,blat.proc3829883.chain_404,blat.proc3829883.chain_405	4
scaffold_2	spliced_intron	15455859	15455931	+	asmbl_25063,asmbl_25064,asmbl_25065,asmbl_25066,asmbl_25067	none	STRG.2500.1,blat.proc3829871.chain_2679,blat.proc3829871.chain_2680,blat.proc3829871.chain_2681,blat.proc3829871.chain_2682,blat.proc3829871.chain_2683	6	STRG.2500.2,blat.proc3829871.chain_2684,blat.proc3829871.chain_2685	3
scaffold_7	alt_donor	1235897	1235898	+	asmbl_50485	none	STRG.8627.8	1	STRG.8627.2,Trinity_GG_4740_c0_g1_i16,Trinity_GG_4740_c1_g1_i2,blat.proc3829875.chain_1042,blat.proc3829875.chain_1043,blat.proc3829875.chain_1049	6
scaffold_1	alt_donor	21931318	21931319	-	asmbl_1227	none	STRG.1472.1	1	STRG.1472.2	1
scaffold_17	alt_donor	9956670	9956671	+	asmbl_18261	none	STRG.20598.2,blat.proc3829881.chain_1411	2	STRG.20598.1,blat.proc3829881.chain_1412	2
scaffold_9	alternate_exon	11829494	11831821	-	asmbl_55285	none	STRG.11487.1	1	blat.proc3829891.chain_3582	1
scaffold_22	retained_intron	504274	504463	-	asmbl_29863,asmbl_29867	none	blat.proc3829899.chain_1821,blat.proc3829899.chain_1823	2	STRG.24685.1,STRG.24685.2,blat.proc3829899.chain_1824,blat.proc3829899.chain_1826,blat.proc3829899.chain_1829,blat.proc3829899.chain_1831,blat.proc3829899.chain_1834	7
scaffold_22	alt_acceptor	3792612	3792613	-	asmbl_29950,asmbl_29951,asmbl_29952	none	STRG.24796.1,STRG.24796.2,blat.proc3829899.chain_1847,blat.proc3829899.chain_1848	4	STRG.24796.3	1
scaffold_18	alt_acceptor	5584689	5584690	-	asmbl_19901,asmbl_19902	none	STRG.21304.1,Trinity_GG_28951_c1_g1_i4,blat.proc3829897.chain_2182,blat.proc3829897.chain_2194,blat.proc3829897.chain_2195	5	STRG.21304.2	1
scaffold_11	retained_intron	8790267	8790289	-	asmbl_6859	none	STRG.13891.4	1	STRG.13891.2	1
scaffold_9	alt_acceptor	15356150	15356151	+	asmbl_54533	none	STRG.11727.1	1	STRG.11727.3	1
scaffold_13	starts_in_intron	8268935	8268935	+	asmbl_11099	none	blat.proc3829879.chain_854	1	STRG.16102.1,STRG.16102.2,blat.proc3829879.chain_855	3
scaffold_3	skipped_exon	8999514	9000798	-	asmbl_39006,asmbl_39007	none	STRG.3425.1,STRG.3425.2	2	blat.proc3829887.chain_3227,blat.proc3829887.chain_3230,blat.proc3829887.chain_3231	3
scaffold_7	alternate_exon	11916907	11920811	-	asmbl_49987	none	STRG.9288.2,Trinity_GG_22258_c0_g1_i3,Trinity_GG_22258_c1_g1_i1,blat.proc3829891.chain_1549,blat.proc3829891.chain_1551	5	STRG.9288.3,blat.proc3829891.chain_1548	2
scaffold_2	alt_acceptor	18342009	18342010	+	asmbl_25259	none	STRG.2709.3	1	STRG.2709.2	1
scaffold_11	retained_intron	1305199	1305286	-	asmbl_6401	none	Trinity_GG_24473_c0_g1_i2,blat.proc3829893.chain_1779	2	blat.proc3829893.chain_1780	1
scaffold_10	retained_exon	6705881	6705950	-	asmbl_3411	none	blat.proc3829893.chain_978	1	blat.proc3829893.chain_979	1
scaffold_9	spliced_intron	637042	637113	+	asmbl_53759	none	STRG.10784.1	1	STRG.10784.2,blat.proc3829875.chain_3282	2
scaffold_20	spliced_intron	5928434	5928707	-	asmbl_26714,asmbl_26715	none	STRG.23186.1,STRG.23186.2,blat.proc3829899.chain_131,blat.proc3829899.chain_132	4	Trinity_GG_29904_c0_g1_i4,blat.proc3829899.chain_133	2
scaffold_2	starts_in_intron	6674900	6674900	-	asmbl_23249	none	Trinity_GG_18149_c0_g1_i2,blat.proc3829887.chain_1937	2	STRG.2026.1,STRG.2026.2,STRG.2026.3,Trinity_GG_18149_c0_g1_i1,Trinity_GG_18149_c0_g1_i3,Trinity_GG_18149_c0_g1_i5,blat.proc3829887.chain_1936,blat.proc3829887.chain_1938,blat.proc3829887.chain_1939	9
scaffold_9	starts_in_intron	17791145	17791145	-	asmbl_55645	none	blat.proc3829893.chain_161	1	STRG.11857.1,STRG.11857.2,Trinity_GG_23527_c0_g1_i1,Trinity_GG_23527_c0_g1_i2,blat.proc3829893.chain_162,blat.proc3829893.chain_163	6
scaffold_6	retained_exon	16621164	16621258	-	asmbl_49086	none	STRG.8381.1,blat.proc3829891.chain_702	2	STRG.8381.3,blat.proc3829891.chain_700	2
scaffold_20	retained_intron	1754144	1754228	+	asmbl_25607,asmbl_25608	none	STRG.22907.1,STRG.22907.4,blat.proc3829883.chain_56	3	STRG.22907.3,Trinity_GG_12636_c0_g1_i4,blat.proc3829883.chain_58	3
scaffold_16	alternate_exon	15222806	15222885	+	asmbl_17525	none	STRG.19866.3	1	STRG.19866.1,STRG.19866.2,blat.proc3829881.chain_657	3
scaffold_4	starts_in_intron	12690156	12690156	-	asmbl_41693	none	STRG.4909.1,Trinity_GG_19724_c1_g1_i1,blat.proc3829889.chain_923	3	blat.proc3829889.chain_919	1
scaffold_8	alt_acceptor	9872480	9872481	-	asmbl_53056	none	STRG.10226.2	1	STRG.10226.1,blat.proc3829891.chain_2378	2
scaffold_22	alt_donor	7968417	7968418	+	asmbl_29536	none	STRG.25132.1,blat.proc3829883.chain_2194	2	STRG.25132.2	1
scaffold_3	alt_donor	8091814	8091815	+	asmbl_40154	none	STRG.3385.2,Trinity_GG_1890_c0_g1_i1,blat.proc3829871.chain_3515	3	STRG.3385.1	1
scaffold_20	alt_donor	1490365	1490366	+	asmbl_25571	none	STRG.22855.2	1	STRG.22855.3	1
scaffold_25	ends_in_intron	9503889	9503889	-	asmbl_34477	none	blat.proc3829901.chain_1007	1	STRG.27747.1,blat.proc3829901.chain_1008	2
scaffold_13	retained_intron	7501582	7501940	-	asmbl_9844,asmbl_9845,asmbl_9848	none	Trinity_GG_26030_c0_g1_i10,Trinity_GG_26030_c0_g1_i9,blat.proc3829895.chain_813,blat.proc3829895.chain_815,blat.proc3829895.chain_816,blat.proc3829895.chain_818,blat.proc3829895.chain_820,blat.proc3829895.chain_821	8	STRG.16034.1,STRG.16034.2,STRG.16034.3,STRG.16034.4,STRG.16034.5,Trinity_GG_26030_c0_g1_i2,Trinity_GG_26030_c0_g1_i3,Trinity_GG_26030_c0_g1_i4,blat.proc3829895.chain_812,blat.proc3829895.chain_814,blat.proc3829895.chain_817,blat.proc3829895.chain_819,blat.proc3829895.chain_822,blat.proc3829895.chain_823	14
scaffold_8	spliced_intron	4194632	4194691	-	asmbl_52750	none	blat.proc3829891.chain_2037	1	STRG.9887.1	1
scaffold_3	alternate_exon	1471712	1471886	+	asmbl_39804	none	Trinity_GG_1668_c0_g1_i2,blat.proc3829871.chain_3114	2	STRG.2964.1,Trinity_GG_1668_c0_g1_i3	2
scaffold_7	alt_donor	12650577	12650578	-	asmbl_50075	none	STRG.9370.1,blat.proc3829891.chain_1618	2	STRG.9370.3	1
scaffold_14	ends_in_intron	9684126	9684126	+	asmbl_12279	none	blat.proc3829879.chain_2077	1	STRG.17339.1,blat.proc3829879.chain_2076	2
scaffold_10	alt_donor	8321056	8321057	-	asmbl_3489	none	STRG.12583.1	1	STRG.12583.2	1
scaffold_14	alt_acceptor	13897694	13897695	+	asmbl_12496,asmbl_12497,asmbl_12499	none	STRG.17653.1,STRG.17653.2,STRG.17653.4,blat.proc3829879.chain_2349	4	STRG.17653.3,STRG.17653.5	2
scaffold_70	ends_in_intron	3993	3993	+	asmbl_51547	none	blat.proc3829885.chain_3148	1	STRG.30084.1,blat.proc3829885.chain_3149	2
scaffold_18	retained_exon	8863589	8863626	-	asmbl_20061,asmbl_20065	none	STRG.21541.2,blat.proc3829897.chain_2356,blat.proc3829897.chain_2358	3	Trinity_GG_29045_c0_g1_i17,blat.proc3829897.chain_2361	2
scaffold_1	spliced_intron	9163929	9164016	-	asmbl_521,asmbl_523	none	STRG.610.1,blat.proc3829887.chain_526	2	blat.proc3829887.chain_524,blat.proc3829887.chain_528	2
scaffold_28	ends_in_intron	55813	55813	-	asmbl_37207	none	Trinity_GG_33360_c1_g1_i1,blat.proc3829901.chain_2321	2	STRG.29222.1,blat.proc3829901.chain_2317,blat.proc3829901.chain_2318	3
scaffold_23	starts_in_intron	7064187	7064187	+	asmbl_30967	none	Trinity_GG_14337_c0_g2_i1,blat.proc3829883.chain_2866	2	STRG.26014.1,blat.proc3829883.chain_2865	2
scaffold_14	skipped_exon	13262030	13262875	-	asmbl_13615	none	STRG.17606.2	1	STRG.17606.1	1
scaffold_2	skipped_exon	14228244	14228598	-	asmbl_23602	none	STRG.2415.1	1	blat.proc3829887.chain_2295	1
scaffold_26	retained_exon	2781939	2781953	+	asmbl_35285	none	blat.proc3829885.chain_929	1	STRG.27953.2	1
scaffold_1	alt_acceptor	16717452	16717453	-	asmbl_1009,asmbl_1014	none	STRG.1175.2,STRG.1175.5	2	STRG.1175.3,STRG.1175.4,STRG.1175.6,blat.proc3829887.chain_1050,blat.proc3829887.chain_1051	5
scaffold_7	skipped_exon	15032178	15034345	-	asmbl_50172	none	STRG.9514.2	1	STRG.9514.1	1
scaffold_18	alt_acceptor	7520527	7520528	-	asmbl_19989	none	STRG.21442.2	1	STRG.21442.1	1
scaffold_1	ends_in_intron	45929	45929	-	asmbl_8	none	blat.proc3829885.chain_3733	1	STRG.19.1,STRG.19.3,blat.proc3829885.chain_3732	3
scaffold_5	alternate_exon	7027730	7027756	+	asmbl_44135	none	STRG.6108.1	1	STRG.6108.2	1
scaffold_22	spliced_intron	214832	215205	+	asmbl_29112,asmbl_29115,asmbl_29116,asmbl_29117	none	STRG.24661.2,STRG.24661.3,STRG.24661.4,STRG.24661.5,blat.proc3829883.chain_1716,blat.proc3829883.chain_1717	6	STRG.24661.1,Trinity_GG_13639_c0_g1_i4,blat.proc3829883.chain_1718	3
scaffold_19	starts_in_intron	12671592	12671592	+	asmbl_22628	none	Trinity_GG_12491_c0_g1_i4,blat.proc3829881.chain_3543	2	STRG.22573.1,blat.proc3829881.chain_3545	2
scaffold_7	retained_intron	4915680	4915757	+	asmbl_50643,asmbl_50644	none	STRG.8828.1,STRG.8828.2,blat.proc3829875.chain_1206	3	STRG.8828.3	1
scaffold_3	starts_in_intron	12453087	12453087	-	asmbl_39162	none	blat.proc3829887.chain_3407	1	STRG.3640.1,blat.proc3829887.chain_3408	2
scaffold_2	alt_acceptor	7119290	7119291	+	asmbl_24558	none	STRG.2045.2,Trinity_GG_1155_c0_g1_i2,blat.proc3829871.chain_2117	3	STRG.2045.1,STRG.2045.3,Trinity_GG_1155_c0_g1_i1,blat.proc3829871.chain_2116	4
scaffold_7	spliced_intron	12540189	12540286	-	asmbl_50055,asmbl_50056,asmbl_50059,asmbl_50060,asmbl_50061	none	STRG.9352.1,STRG.9352.2,STRG.9352.3,STRG.9352.4,STRG.9352.5,blat.proc3829891.chain_1570,blat.proc3829891.chain_1572	7	blat.proc3829891.chain_1571	1
scaffold_11	alt_donor	6590721	6590722	-	asmbl_6700,asmbl_6701	none	STRG.13693.2,blat.proc3829893.chain_2138	2	STRG.13693.1,blat.proc3829893.chain_2139	2
scaffold_19	retained_intron	5594710	5594731	+	asmbl_22185	none	STRG.22107.1,Trinity_GG_12218_c0_g1_i1	2	blat.proc3829881.chain_3044	1
scaffold_11	alt_acceptor	6016403	6016404	+	asmbl_5565	none	STRG.13657.3,blat.proc3829877.chain_2111	2	STRG.13657.1,STRG.13657.2,blat.proc3829877.chain_2112,blat.proc3829877.chain_2113	4
scaffold_15	spliced_intron	11562810	11563294	-	asmbl_15538	none	STRG.18612.1,blat.proc3829895.chain_3333,blat.proc3829895.chain_3334	3	blat.proc3829895.chain_3335	1
scaffold_17	alt_acceptor	4688354	4688355	-	asmbl_18926	none	STRG.20192.1,blat.proc3829897.chain_1142	2	STRG.20192.2,blat.proc3829897.chain_1141	2
scaffold_16	skipped_exon	1777457	1777810	+	asmbl_16876	none	STRG.19095.3,Trinity_GG_10467_c0_g1_i1,blat.proc3829879.chain_3695	3	STRG.19095.1,STRG.19095.2,Trinity_GG_10467_c0_g1_i2,Trinity_GG_10467_c0_g1_i3,blat.proc3829879.chain_3694,blat.proc3829879.chain_3696	6
scaffold_11	spliced_intron	14533655	14533915	+	asmbl_6066,asmbl_6067,asmbl_6069,asmbl_6071,asmbl_6072	none	STRG.14239.1,STRG.14239.2,STRG.14239.3,Trinity_GG_7860_c0_g1_i2,Trinity_GG_7860_c0_g1_i6,blat.proc3829877.chain_2743,blat.proc3829877.chain_2745,blat.proc3829877.chain_2746,blat.proc3829877.chain_2747,blat.proc3829877.chain_2748	10	STRG.14239.4,Trinity_GG_7860_c0_g1_i7,blat.proc3829877.chain_2744	3
scaffold_14	alt_donor	15346207	15346208	-	asmbl_13697	none	STRG.17749.3,blat.proc3829895.chain_2514	2	STRG.17749.1,blat.proc3829895.chain_2513	2
scaffold_4	starts_in_intron	7993857	7993857	+	asmbl_42859	none	Trinity_GG_2519_c0_g1_i2,blat.proc3829873.chain_915	2	STRG.4620.2,STRG.4620.3,Trinity_GG_2519_c0_g1_i3,blat.proc3829873.chain_912,blat.proc3829873.chain_913,blat.proc3829873.chain_914	6
scaffold_12	ends_in_intron	9856027	9856027	+	asmbl_8850	none	blat.proc3829877.chain_3425	1	STRG.14940.1,blat.proc3829877.chain_3424	2
scaffold_7	skipped_exon	8813443	8814448	+	asmbl_50942	none	STRG.9113.2,blat.proc3829875.chain_1477	2	STRG.9113.1,blat.proc3829875.chain_1478	2
scaffold_14	retained_exon	15565850	15565903	+	asmbl_12606	none	blat.proc3829879.chain_2468	1	STRG.17784.3	1
scaffold_15	alt_donor	5345936	5345937	+	asmbl_14142	none	STRG.18224.2,blat.proc3829879.chain_2843	2	STRG.18224.1,blat.proc3829879.chain_2841,blat.proc3829879.chain_2842	3
scaffold_3	starts_in_intron	16996116	16996116	+	asmbl_40598	none	Trinity_GG_2202_c0_g1_i1,blat.proc3829873.chain_312	2	STRG.3942.1,STRG.3942.2,Trinity_GG_2202_c0_g1_i2,blat.proc3829873.chain_313	4
scaffold_28	ends_in_intron	7531827	7531827	+	asmbl_38386	none	blat.proc3829885.chain_2867	1	STRG.29810.1,blat.proc3829885.chain_2865,blat.proc3829885.chain_2866	3
scaffold_22	retained_exon	6217741	6217849	-	asmbl_30092,asmbl_30094	none	STRG.24965.1,STRG.24965.4	2	STRG.24965.2	1
scaffold_8	spliced_intron	4234132	4234567	+	asmbl_51810,asmbl_51811	none	STRG.9899.1,blat.proc3829875.chain_2343,blat.proc3829875.chain_2344	3	blat.proc3829875.chain_2345	1
scaffold_9	starts_in_intron	5271842	5271842	+	asmbl_54003	none	blat.proc3829875.chain_3590	1	STRG.11095.1,STRG.11095.3	2
scaffold_12	alternate_exon	2662438	2663777	+	asmbl_8467,asmbl_8468	none	STRG.14495.1,STRG.14495.3,Trinity_GG_7992_c1_g1_i1,blat.proc3829877.chain_2969,blat.proc3829877.chain_2970,blat.proc3829877.chain_2973	6	blat.proc3829877.chain_2972	1
scaffold_6	alt_donor	18020018	18020019	+	asmbl_47742	none	STRG.8481.3,blat.proc3829875.chain_787	2	STRG.8481.2,blat.proc3829875.chain_786	2
scaffold_13	alt_acceptor	522194	522195	+	asmbl_10454,asmbl_10456,asmbl_10457,asmbl_10458,asmbl_10459,asmbl_10460,asmbl_10461	none	STRG.15434.1,STRG.15434.2,STRG.15434.3,STRG.15434.4,STRG.15434.5,Trinity_GG_8491_c0_g1_i1,blat.proc3829879.chain_110,blat.proc3829879.chain_111,blat.proc3829879.chain_114,blat.proc3829879.chain_115,blat.proc3829879.chain_116	11	Trinity_GG_8491_c0_g1_i4,blat.proc3829879.chain_112	2
scaffold_9	starts_in_intron	10908432	10908432	+	asmbl_54290	none	Trinity_GG_6354_c0_g1_i2,blat.proc3829877.chain_174	2	STRG.11390.1,blat.proc3829877.chain_173	2
scaffold_12	alt_acceptor	4613101	4613102	-	asmbl_7547,asmbl_7548,asmbl_7549,asmbl_7552,asmbl_7553	none	STRG.14626.1,STRG.14626.2,blat.proc3829893.chain_2996,blat.proc3829893.chain_2997,blat.proc3829893.chain_2998,blat.proc3829893.chain_2999,blat.proc3829893.chain_3001	7	STRG.14626.4	1
scaffold_19	spliced_intron	3516757	3516831	+	asmbl_22122	none	blat.proc3829881.chain_2985	1	STRG.22028.1	1
scaffold_26	ends_in_intron	8449952	8449952	+	asmbl_35703	none	blat.proc3829885.chain_1450	1	STRG.28422.1,blat.proc3829885.chain_1449	2
scaffold_11	retained_exon	13097278	13097364	+	asmbl_5998,asmbl_5999,asmbl_6001,asmbl_6002,asmbl_6004,asmbl_6005,asmbl_6006,asmbl_6008	none	STRG.14176.2,STRG.14176.3,STRG.14176.4,blat.proc3829877.chain_2669,blat.proc3829877.chain_2670,blat.proc3829877.chain_2671,blat.proc3829877.chain_2673,blat.proc3829877.chain_2675,blat.proc3829877.chain_2678	9	STRG.14176.1,blat.proc3829877.chain_2672,blat.proc3829877.chain_2674,blat.proc3829877.chain_2676,blat.proc3829877.chain_2677	5
scaffold_1	starts_in_intron	14427416	14427416	-	asmbl_927,asmbl_931	none	blat.proc3829887.chain_960,blat.proc3829887.chain_962	2	STRG.1042.1,STRG.1042.2,STRG.1042.3,blat.proc3829887.chain_961,blat.proc3829887.chain_963,blat.proc3829887.chain_964	6
scaffold_10	retained_intron	761892	761975	-	asmbl_2923	none	Trinity_GG_23667_c0_g1_i2,blat.proc3829893.chain_410	2	STRG.11951.1,STRG.11951.2,Trinity_GG_23667_c0_g1_i1,Trinity_GG_23667_c0_g1_i3,blat.proc3829893.chain_408,blat.proc3829893.chain_409	6
scaffold_23	alt_acceptor	10897582	10897583	+	asmbl_31181	none	STRG.26269.2,blat.proc3829883.chain_3191	2	STRG.26269.1,blat.proc3829883.chain_3190	2
scaffold_19	alt_donor	12491455	12491456	+	asmbl_22616,asmbl_22618,asmbl_22619,asmbl_22620,asmbl_22621,asmbl_22622	none	STRG.22568.1,STRG.22568.2,STRG.22568.4,STRG.22568.6,blat.proc3829881.chain_3535,blat.proc3829881.chain_3536,blat.proc3829881.chain_3537,blat.proc3829881.chain_3538	8	STRG.22568.5,blat.proc3829881.chain_3533	2
scaffold_1	starts_in_intron	2744923	2744923	-	asmbl_122	none	STRG.173.3,blat.proc3829887.chain_62	2	STRG.173.1,STRG.173.4,blat.proc3829887.chain_55	3
scaffold_4	ends_in_intron	16462813	16462813	-	asmbl_41924	none	Trinity_GG_19944_c4_g1_i1,blat.proc3829889.chain_1304	2	STRG.5223.1,Trinity_GG_19944_c0_g1_i1,blat.proc3829889.chain_1300	3
scaffold_1	ends_in_intron	6955897	6955897	+	asmbl_1855	none	blat.proc3829871.chain_521	1	STRG.492.1,blat.proc3829871.chain_522	2
scaffold_23	skipped_exon	3447214	3449029	-	asmbl_31513	none	STRG.25743.1	1	STRG.25743.2	1
scaffold_14	retained_exon	4113488	4113544	-	asmbl_13016	none	STRG.16950.2,Trinity_GG_26483_c0_g1_i2,blat.proc3829895.chain_1612	3	STRG.16950.1,Trinity_GG_26483_c0_g1_i1,blat.proc3829895.chain_1613	3
scaffold_16	alt_donor	7218765	7218766	-	asmbl_16346,asmbl_16353,asmbl_16356	none	STRG.19382.2,STRG.19382.5,STRG.19382.6	3	STRG.19382.1,STRG.19382.3,STRG.19382.4,STRG.19382.7	4
scaffold_1	spliced_intron	12754530	12756067	+	asmbl_2238	none	STRG.893.2	1	STRG.893.1,Trinity_GG_528_c0_g1_i3,blat.proc3829871.chain_952	3
scaffold_11	spliced_intron	1304892	1305131	-	asmbl_6402,asmbl_6403	none	STRG.13304.1,blat.proc3829893.chain_1780,blat.proc3829893.chain_1781	3	Trinity_GG_24473_c0_g1_i2,blat.proc3829893.chain_1779	2
scaffold_21	alternate_exon	5139788	5141662	-	asmbl_27636	none	STRG.24046.3	1	STRG.24046.1,STRG.24046.4	2
scaffold_12	alternate_exon	9229443	9230828	-	asmbl_7785	none	STRG.14910.2	1	STRG.14910.3,blat.proc3829893.chain_3311	2
scaffold_11	starts_in_intron	4640077	4640077	+	asmbl_5454	none	Trinity_GG_7453_c0_g1_i1,blat.proc3829877.chain_2036	2	STRG.13534.1,Trinity_GG_7453_c0_g1_i3,blat.proc3829877.chain_2037,blat.proc3829877.chain_2038,blat.proc3829877.chain_2039	5
scaffold_3	alt_acceptor	6652934	6652935	+	asmbl_40059	none	STRG.3282.3	1	STRG.3282.1,STRG.3282.2,blat.proc3829871.chain_3445	3
scaffold_1	retained_intron	4864196	4864311	-	asmbl_221	none	STRG.287.2,blat.proc3829887.chain_169	2	STRG.287.1,blat.proc3829887.chain_168	2
scaffold_21	starts_in_intron	2625384	2625384	+	asmbl_28437	none	Trinity_GG_13234_c0_g1_i1,blat.proc3829883.chain_1031	2	STRG.23882.1,STRG.23882.2,blat.proc3829883.chain_1030,blat.proc3829883.chain_1032	4
scaffold_12	starts_in_intron	12801620	12801620	+	asmbl_8990	none	blat.proc3829877.chain_3579	1	STRG.15161.1,STRG.15161.2,blat.proc3829877.chain_3578,blat.proc3829877.chain_3580	4
scaffold_3	alt_donor	18321151	18321152	-	asmbl_39554	none	STRG.4032.2	1	STRG.4032.1	1
scaffold_24	alternate_exon	5312389	5312421	-	asmbl_32882	none	Trinity_GG_31886_c0_g1_i2,blat.proc3829899.chain_3663	2	STRG.26598.1,blat.proc3829899.chain_3662	2
scaffold_6	spliced_intron	8172324	8172399	-	asmbl_48475,asmbl_48476,asmbl_48479,asmbl_48480,asmbl_48481	none	STRG.7691.1,STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3715,blat.proc3829889.chain_3716,blat.proc3829889.chain_3724	6	Trinity_GG_21366_c0_g1_i6,blat.proc3829889.chain_3718,blat.proc3829889.chain_3725	3
scaffold_9	alternate_exon	3664940	3665928	+	asmbl_53890	none	STRG.10962.3	1	STRG.10962.1,Trinity_GG_6100_c0_g1_i3,blat.proc3829875.chain_3440	3
scaffold_1	alt_donor	17729078	17729079	+	asmbl_2516	none	STRG.1242.1,blat.proc3829871.chain_1307	2	STRG.1242.2	1
scaffold_1	spliced_intron	849802	849972	+	asmbl_1416	none	STRG.41.2,Trinity_GG_29_c0_g1_i1,blat.proc3829871.chain_50	3	STRG.41.5,Trinity_GG_29_c0_g1_i3,Trinity_GG_29_c0_g1_i4,blat.proc3829871.chain_51,blat.proc3829871.chain_53	5
scaffold_11	retained_intron	13092586	13094447	+	asmbl_5997,asmbl_5998,asmbl_6002,asmbl_6003	none	Trinity_GG_7823_c0_g1_i13,blat.proc3829877.chain_2668,blat.proc3829877.chain_2670,blat.proc3829877.chain_2673,blat.proc3829877.chain_2676,blat.proc3829877.chain_2677	6	STRG.14176.1,STRG.14176.3,blat.proc3829877.chain_2671,blat.proc3829877.chain_2672,blat.proc3829877.chain_2674,blat.proc3829877.chain_2678	6
scaffold_28	alt_acceptor	1648050	1648051	-	asmbl_37322	none	STRG.29335.2	1	STRG.29335.1,blat.proc3829901.chain_2439	2
scaffold_14	starts_in_intron	12349132	12349132	+	asmbl_12405,asmbl_12406,asmbl_12408	none	STRG.17560.2,STRG.17560.3,blat.proc3829879.chain_2236,blat.proc3829879.chain_2237,blat.proc3829879.chain_2238	5	STRG.17560.1	1
scaffold_23	starts_in_intron	4454861	4454861	+	asmbl_30813	none	Trinity_GG_14249_c0_g1_i1,blat.proc3829883.chain_2704	2	STRG.25835.1,Trinity_GG_14249_c0_g1_i2,blat.proc3829883.chain_2705	3
scaffold_6	alternate_exon	5187640	5193921	+	asmbl_46864,asmbl_46865,asmbl_46870	none	STRG.7489.2,STRG.7489.3,blat.proc3829873.chain_3581,blat.proc3829873.chain_3583,blat.proc3829873.chain_3585	5	blat.proc3829873.chain_3588	1
scaffold_5	retained_intron	10132156	10132315	+	asmbl_44323	none	Trinity_GG_3405_c0_g1_i1,blat.proc3829873.chain_2385	2	STRG.6306.1,STRG.6306.2,Trinity_GG_3405_c0_g1_i2,blat.proc3829873.chain_2386	4
scaffold_16	alt_donor	10155720	10155721	-	asmbl_16486	none	STRG.19588.1,blat.proc3829897.chain_534	2	STRG.19588.2	1
scaffold_2	retained_intron	19881129	19881471	+	asmbl_25331	none	Trinity_GG_1561_c0_g1_i1,blat.proc3829871.chain_2943	2	STRG.2832.1,Trinity_GG_1561_c0_g2_i1,blat.proc3829871.chain_2944	3
scaffold_18	retained_intron	9787536	9787656	-	asmbl_20116	none	Trinity_GG_29074_c0_g1_i2,blat.proc3829897.chain_2420	2	STRG.21574.1,STRG.21574.2,blat.proc3829897.chain_2421	3
scaffold_17	retained_intron	6808283	6808729	+	asmbl_18007	none	STRG.20321.2,Trinity_GG_11120_c1_g1_i1,blat.proc3829881.chain_1093	3	STRG.20321.1,Trinity_GG_11120_c0_g1_i1,blat.proc3829881.chain_1092	3
scaffold_16	alt_donor	9144477	9144478	+	asmbl_17262,asmbl_17263,asmbl_17264	none	STRG.19502.3,blat.proc3829881.chain_395,blat.proc3829881.chain_397	3	STRG.19502.1,STRG.19502.2,blat.proc3829881.chain_392,blat.proc3829881.chain_393,blat.proc3829881.chain_396	5
scaffold_21	alternate_exon	1755935	1755990	-	asmbl_27449	none	STRG.23809.3	1	STRG.23809.1,STRG.23809.2,blat.proc3829899.chain_886,blat.proc3829899.chain_887,blat.proc3829899.chain_888	5
scaffold_8	ends_in_intron	12913292	12913292	-	asmbl_53252	none	STRG.10471.5,Trinity_GG_22811_c3_g1_i1,blat.proc3829891.chain_2574	3	STRG.10471.2,STRG.10471.3,STRG.10471.4	3
scaffold_13	alt_acceptor	7319270	7319271	-	asmbl_9836	none	STRG.16017.1,Trinity_GG_26025_c0_g1_i2,blat.proc3829895.chain_796	3	STRG.16017.2,Trinity_GG_26025_c0_g1_i1,blat.proc3829895.chain_797	3
scaffold_11	starts_in_intron	15700552	15700552	+	asmbl_6105	none	Trinity_GG_7877_c0_g1_i1,blat.proc3829877.chain_2778	2	STRG.14298.1,Trinity_GG_7877_c0_g1_i2,blat.proc3829877.chain_2777	3
scaffold_25	alt_acceptor	9120030	9120031	+	asmbl_33775	none	STRG.27709.2	1	STRG.27709.3	1
scaffold_5	spliced_intron	5046593	5047195	+	asmbl_43993,asmbl_43994,asmbl_43995	none	STRG.5951.2,blat.proc3829873.chain_2109	2	blat.proc3829873.chain_2108	1
scaffold_11	retained_intron	14532977	14533569	+	asmbl_6068,asmbl_6069,asmbl_6070,asmbl_6072	none	STRG.14239.2,STRG.14239.4,Trinity_GG_7860_c0_g1_i7,blat.proc3829877.chain_2744,blat.proc3829877.chain_2746,blat.proc3829877.chain_2748	6	STRG.14239.1,Trinity_GG_7860_c0_g1_i2,blat.proc3829877.chain_2743,blat.proc3829877.chain_2747	4
scaffold_15	starts_in_intron	670516	670516	-	asmbl_14952	none	STRG.17917.2,blat.proc3829895.chain_2553	2	STRG.17917.1,blat.proc3829895.chain_2552,blat.proc3829895.chain_2555	3
scaffold_5	retained_intron	5046593	5047195	+	asmbl_43998	none	blat.proc3829873.chain_2108	1	STRG.5951.2,blat.proc3829873.chain_2109	2
scaffold_1	ends_in_intron	3167959	3167959	+	asmbl_1570	none	blat.proc3829871.chain_154	1	STRG.196.1,blat.proc3829871.chain_155	2
scaffold_6	spliced_intron	17672463	17672607	+	asmbl_47710,asmbl_47715	none	STRG.8454.1,STRG.8454.4,Trinity_GG_4651_c0_g1_i2,blat.proc3829875.chain_847	4	STRG.8454.2,STRG.8454.3,Trinity_GG_4651_c0_g1_i4,Trinity_GG_4651_c0_g1_i5,blat.proc3829875.chain_846,blat.proc3829875.chain_848,blat.proc3829875.chain_849,blat.proc3829875.chain_850	8
scaffold_1	spliced_intron	9164643	9164743	-	asmbl_521	none	STRG.610.1	1	blat.proc3829887.chain_526	1
scaffold_6	spliced_intron	8922099	8922181	-	asmbl_48536	none	blat.proc3829891.chain_34	1	STRG.7762.1,Trinity_GG_21405_c0_g1_i2,blat.proc3829891.chain_33	3
scaffold_20	ends_in_intron	2142093	2142093	+	asmbl_25634	none	blat.proc3829883.chain_83	1	STRG.22944.1,blat.proc3829883.chain_82	2
scaffold_2	alt_acceptor	1258166	1258167	-	asmbl_22864	none	STRG.1588.1	1	blat.proc3829871.chain_1675	1
scaffold_25	starts_in_intron	5776613	5776613	+	asmbl_33576	none	Trinity_GG_15145_c0_g1_i6,blat.proc3829885.chain_506	2	STRG.27456.2,blat.proc3829885.chain_510	2
scaffold_5	starts_in_intron	16022797	16022797	+	asmbl_44696	none	STRG.6779.3	1	STRG.6779.1	1
scaffold_4	starts_in_intron	7992014	7992014	+	asmbl_42861	none	blat.proc3829873.chain_913	1	STRG.4620.2,STRG.4620.3,blat.proc3829873.chain_914	3
scaffold_20	alt_acceptor	1875917	1875918	-	asmbl_26544	none	STRG.22909.1	1	blat.proc3829883.chain_53	1
scaffold_15	starts_in_intron	13654902	13654902	-	asmbl_15667	none	blat.proc3829895.chain_3506	1	STRG.18784.1,STRG.18784.3,blat.proc3829895.chain_3505	3
scaffold_18	ends_in_intron	2538991	2538991	+	asmbl_20441	none	blat.proc3829881.chain_1979	1	STRG.21114.1,STRG.21114.2,blat.proc3829881.chain_1978,blat.proc3829881.chain_1980	4
scaffold_21	retained_exon	233469	233520	-	asmbl_27308	none	STRG.23713.1,Trinity_GG_30226_c0_g1_i2,blat.proc3829899.chain_760	3	STRG.23713.2,Trinity_GG_30226_c0_g1_i3,blat.proc3829899.chain_761	3
scaffold_4	alternate_exon	13724049	13724131	-	asmbl_41746	none	STRG.4993.2,blat.proc3829889.chain_1047	2	blat.proc3829889.chain_1046	1
scaffold_16	alt_donor	1878641	1878642	+	asmbl_16894	none	STRG.19097.1	1	STRG.19097.2	1
scaffold_11	alt_donor	13036294	13036295	-	asmbl_7094,asmbl_7096	none	STRG.14169.1,blat.proc3829893.chain_2575,blat.proc3829893.chain_2577	3	STRG.14169.2	1
scaffold_2	skipped_exon	2882290	2884803	-	asmbl_22954,asmbl_22956,asmbl_22958,asmbl_22960,asmbl_22962,asmbl_22963,asmbl_22965	none	STRG.1733.1,STRG.1733.2,STRG.1733.3,blat.proc3829887.chain_1492,blat.proc3829887.chain_1493,blat.proc3829887.chain_1494,blat.proc3829887.chain_1495,blat.proc3829887.chain_1497,blat.proc3829887.chain_1498,blat.proc3829887.chain_1500	10	STRG.1733.4	1
scaffold_12	spliced_intron	14289469	14289681	-	asmbl_8132,asmbl_8133,asmbl_8136	none	STRG.15255.1,STRG.15255.2,STRG.15255.3,blat.proc3829893.chain_3648,blat.proc3829893.chain_3649	5	Trinity_GG_25533_c0_g1_i4,blat.proc3829893.chain_3650	2
scaffold_3	spliced_intron	2269178	2269345	+	asmbl_39860	none	STRG.3030.1,blat.proc3829871.chain_3213	2	STRG.3030.2,blat.proc3829871.chain_3212	2
scaffold_22	skipped_exon	7802137	7803136	-	asmbl_30192	none	blat.proc3829899.chain_2202	1	STRG.25117.1,blat.proc3829899.chain_2203	2
scaffold_13	spliced_intron	3568630	3568756	+	asmbl_10694	none	STRG.15661.1,blat.proc3829879.chain_278	2	blat.proc3829879.chain_280	1
scaffold_3	spliced_intron	13179592	13179723	+	asmbl_40387,asmbl_40389,asmbl_40391,asmbl_40392,asmbl_40395	none	STRG.3679.1,Trinity_GG_2066_c0_g1_i3,blat.proc3829873.chain_75,blat.proc3829873.chain_77,blat.proc3829873.chain_78,blat.proc3829873.chain_79,blat.proc3829873.chain_80	7	blat.proc3829873.chain_76	1
scaffold_26	retained_intron	3811137	3811207	-	asmbl_34783	none	STRG.28065.2,blat.proc3829901.chain_1270	2	STRG.28065.1,blat.proc3829901.chain_1271	2
scaffold_1	alt_acceptor	11174989	11174990	+	asmbl_2074,asmbl_2075	none	STRG.743.2,blat.proc3829871.chain_814	2	STRG.743.3,blat.proc3829871.chain_815	2
scaffold_3	starts_in_intron	8995753	8995753	-	asmbl_39004	none	blat.proc3829887.chain_3228	1	STRG.3425.1,STRG.3425.2,blat.proc3829887.chain_3227,blat.proc3829887.chain_3230,blat.proc3829887.chain_3231	5
scaffold_11	alt_donor	13256116	13256117	+	asmbl_6020	none	STRG.14184.3	1	STRG.14184.2,blat.proc3829877.chain_2651	2
scaffold_6	spliced_intron	13575827	13577850	-	asmbl_48852	none	STRG.8093.3	1	STRG.8093.2	1
scaffold_15	spliced_intron	15176771	15176878	+	asmbl_14674,asmbl_14675,asmbl_14678,asmbl_14679,asmbl_14680,asmbl_14681,asmbl_14684,asmbl_14685,asmbl_14688,asmbl_14690,asmbl_14691,asmbl_14692	none	STRG.18906.1,STRG.18906.2,STRG.18906.3,STRG.18906.4,blat.proc3829879.chain_3471,blat.proc3829879.chain_3472,blat.proc3829879.chain_3473,blat.proc3829879.chain_3474,blat.proc3829879.chain_3476,blat.proc3829879.chain_3477,blat.proc3829879.chain_3478,blat.proc3829879.chain_3484,blat.proc3829879.chain_3486,blat.proc3829879.chain_3487	14	blat.proc3829879.chain_3475,blat.proc3829879.chain_3479,blat.proc3829879.chain_3480,blat.proc3829879.chain_3485	4
scaffold_20	alt_acceptor	8676950	8676951	+	asmbl_25952	none	STRG.23404.1,blat.proc3829883.chain_485	2	STRG.23404.2,blat.proc3829883.chain_484	2
scaffold_15	retained_intron	13972358	13972548	+	asmbl_14608	none	Trinity_GG_10330_c0_g1_i5,blat.proc3829879.chain_3418	2	STRG.18817.1,Trinity_GG_10330_c0_g1_i1,blat.proc3829879.chain_3419,blat.proc3829879.chain_3421	4
scaffold_8	alt_donor	17853739	17853740	+	asmbl_52509	none	STRG.10688.1,Trinity_GG_5911_c0_g1_i2,blat.proc3829875.chain_3137	3	STRG.10688.2,Trinity_GG_5911_c0_g1_i1,blat.proc3829875.chain_3138	3
scaffold_13	alternate_exon	4602230	4602268	-	asmbl_9610	none	Trinity_GG_25880_c0_g1_i1,blat.proc3829895.chain_530	2	blat.proc3829895.chain_533	1
scaffold_12	alt_donor	16412989	16412990	+	asmbl_9142	none	STRG.15380.1,blat.proc3829879.chain_46	2	STRG.15380.2,blat.proc3829879.chain_45	2
scaffold_7	retained_intron	13210711	13210856	+	asmbl_51204	none	STRG.9420.1,blat.proc3829875.chain_1884	2	STRG.9420.2,STRG.9420.3,STRG.9420.4,blat.proc3829875.chain_1881,blat.proc3829875.chain_1882,blat.proc3829875.chain_1883	6
scaffold_14	alt_donor	7300268	7300269	+	asmbl_12133	none	STRG.17156.1	1	blat.proc3829879.chain_1827	1
scaffold_5	spliced_intron	10314896	10314969	+	asmbl_44344	none	STRG.6321.1,blat.proc3829873.chain_2468	2	STRG.6321.2,Trinity_GG_3448_c0_g1_i3,blat.proc3829873.chain_2467	3
scaffold_10	alternate_exon	16531477	16532185	+	asmbl_4994	none	blat.proc3829877.chain_1621	1	STRG.13112.2,blat.proc3829877.chain_1620	2
scaffold_10	spliced_intron	5856417	5857533	-	asmbl_3319	none	blat.proc3829893.chain_873	1	blat.proc3829893.chain_870	1
scaffold_4	alternate_exon	19604625	19604856	-	asmbl_42220,asmbl_42221	none	STRG.5547.1,STRG.5547.2	2	STRG.5547.4	1
scaffold_12	starts_in_intron	15761187	15761187	+	asmbl_9101	none	blat.proc3829879.chain_33	1	STRG.15355.2	1
scaffold_4	ends_in_intron	14108643	14108643	+	asmbl_43178,asmbl_43183	none	Trinity_GG_2801_c0_g1_i3,blat.proc3829873.chain_1346,blat.proc3829873.chain_1348	3	STRG.5033.1,STRG.5033.2,STRG.5033.3,blat.proc3829873.chain_1349	4
scaffold_1	alt_acceptor	2744687	2744688	-	asmbl_123	none	STRG.173.4,blat.proc3829887.chain_56	2	STRG.173.1,blat.proc3829887.chain_55	2
scaffold_1	starts_in_intron	176123	176123	-	asmbl_11,asmbl_14	none	STRG.15.2,blat.proc3829885.chain_3685,blat.proc3829885.chain_3688	3	STRG.15.1,Trinity_GG_17028_c0_g1_i5,blat.proc3829885.chain_3683,blat.proc3829885.chain_3687	4
scaffold_4	alt_donor	12629845	12629846	-	asmbl_41681,asmbl_41684	none	STRG.4901.1,blat.proc3829889.chain_893,blat.proc3829889.chain_894	3	STRG.4901.3,blat.proc3829889.chain_896	2
scaffold_340	alt_donor	4314	4315	+	asmbl_40968	none	Trinity_GG_16762_c0_g1_i1,blat.proc3829885.chain_3305	2	STRG.30268.1	1
scaffold_26	retained_intron	5874040	5874142	-	asmbl_34909	none	STRG.28273.1	1	STRG.28273.2,Trinity_GG_32822_c0_g1_i1,blat.proc3829901.chain_1451	3
scaffold_13	alt_donor	6140004	6140005	-	asmbl_9733	none	STRG.15904.3,Trinity_GG_25956_c0_g1_i1,blat.proc3829895.chain_670	3	STRG.15904.2	1
scaffold_26	alt_acceptor	9834903	9834904	-	asmbl_35064,asmbl_35065	none	STRG.28503.2,STRG.28503.3,blat.proc3829901.chain_1557	3	STRG.28503.1,blat.proc3829901.chain_1556	2
scaffold_1	retained_intron	1432116	1432283	-	asmbl_68	none	STRG.83.1,Trinity_GG_17024_c0_g1_i1,blat.proc3829885.chain_3677	3	STRG.83.2	1
scaffold_10	alt_acceptor	5812246	5812247	+	asmbl_4484,asmbl_4485	none	STRG.12394.3,blat.proc3829877.chain_1034	2	STRG.12394.1,STRG.12394.2,blat.proc3829877.chain_1035,blat.proc3829877.chain_1036	4
scaffold_17	alt_acceptor	13610820	13610821	+	asmbl_18459	none	STRG.20825.1	1	STRG.20825.2	1
scaffold_13	alt_acceptor	2352538	2352539	+	asmbl_10575,asmbl_10580,asmbl_10581,asmbl_10582,asmbl_10583,asmbl_10584,asmbl_10585,asmbl_10590,asmbl_10591	none	STRG.15543.3,STRG.15543.9,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161	9	STRG.15543.6,STRG.15543.7,blat.proc3829879.chain_162	3
scaffold_3	spliced_intron	18345996	18346126	-	asmbl_39560	none	STRG.4038.1,blat.proc3829889.chain_77	2	blat.proc3829873.chain_417	1
scaffold_21	spliced_intron	9780293	9781249	+	asmbl_28856	none	STRG.24419.2	1	STRG.24419.1,Trinity_GG_13514_c0_g1_i1,blat.proc3829883.chain_1515	3
scaffold_17	alt_donor	11567798	11567799	+	asmbl_18361	none	STRG.20693.1,Trinity_GG_11317_c0_g1_i1	2	STRG.20693.2,STRG.20693.3,STRG.20693.4	3
scaffold_4	ends_in_intron	14664578	14664578	-	asmbl_41820	none	Trinity_GG_19835_c0_g1_i2,blat.proc3829889.chain_1129	2	STRG.5095.1,blat.proc3829889.chain_1128	2
scaffold_17	alt_acceptor	9034623	9034624	-	asmbl_19189,asmbl_19192	none	STRG.20520.1,STRG.20520.4	2	STRG.20520.3,STRG.20520.5,STRG.20520.6	3
scaffold_23	alt_acceptor	6346024	6346025	+	asmbl_30917	none	STRG.25967.2	1	STRG.25967.1,blat.proc3829883.chain_2842	2
scaffold_16	retained_intron	14663726	14663814	+	asmbl_17502	none	STRG.19850.1,Trinity_GG_10852_c1_g1_i1,blat.proc3829881.chain_666	3	STRG.19850.2,Trinity_GG_10852_c1_g1_i2,blat.proc3829881.chain_665	3
scaffold_8	spliced_intron	18084510	18084591	-	asmbl_53511,asmbl_53513,asmbl_53514,asmbl_53516	none	STRG.10701.1,STRG.10701.3,Trinity_GG_22907_c0_g1_i1,Trinity_GG_22907_c0_g1_i2,Trinity_GG_22907_c0_g1_i6,blat.proc3829891.chain_2754,blat.proc3829891.chain_2755,blat.proc3829891.chain_2756	8	STRG.10701.2,Trinity_GG_22907_c0_g1_i4,blat.proc3829891.chain_2753	3
scaffold_16	starts_in_intron	4140344	4140344	-	asmbl_16224	none	blat.proc3829897.chain_305	1	STRG.19217.2,blat.proc3829897.chain_298	2
scaffold_3	spliced_intron	13988445	13988538	+	asmbl_40437	none	STRG.3741.4	1	STRG.3741.1,STRG.3741.2,STRG.3741.3,STRG.3741.5,Trinity_GG_2070_c0_g1_i1,Trinity_GG_2070_c0_g1_i2,Trinity_GG_2070_c0_g1_i4,blat.proc3829873.chain_86,blat.proc3829873.chain_87,blat.proc3829873.chain_88	10
scaffold_10	starts_in_intron	7645643	7645643	+	asmbl_4564	none	Trinity_GG_6923_c0_g1_i2,blat.proc3829877.chain_1130	2	STRG.12541.1,blat.proc3829877.chain_1131	2
scaffold_19	ends_in_intron	2648552	2648552	+	asmbl_22067	none	Trinity_GG_12147_c1_g1_i5,blat.proc3829881.chain_2916	2	STRG.21940.1,Trinity_GG_12147_c1_g1_i4,blat.proc3829881.chain_2917,blat.proc3829881.chain_2919,blat.proc3829881.chain_2920	5
scaffold_8	spliced_intron	11275623	11276066	+	asmbl_52199,asmbl_52200,asmbl_52202,asmbl_52203	none	STRG.10338.1,STRG.10338.2,Trinity_GG_5734_c0_g1_i1,Trinity_GG_5734_c0_g1_i2,blat.proc3829875.chain_2816,blat.proc3829875.chain_2817,blat.proc3829875.chain_2818	7	Trinity_GG_5734_c0_g1_i4,blat.proc3829875.chain_2819	2
scaffold_4	skipped_exon	7151104	7152429	+	asmbl_42803	none	STRG.4558.3	1	STRG.4558.1,STRG.4558.4,STRG.4558.5,blat.proc3829873.chain_883,blat.proc3829873.chain_884	5
scaffold_16	starts_in_intron	6117775	6117775	+	asmbl_17060	none	blat.proc3829881.chain_187	1	STRG.19331.1,blat.proc3829881.chain_189	2
scaffold_9	ends_in_intron	15414730	15414730	-	asmbl_55492	none	blat.proc3829893.chain_106	1	STRG.11732.1,blat.proc3829893.chain_105	2
scaffold_2	alternate_exon	7466326	7469821	-	asmbl_23283	none	STRG.2075.3,Trinity_GG_18127_c0_g1_i18,Trinity_GG_18127_c1_g1_i1,blat.proc3829887.chain_1893,blat.proc3829887.chain_1902	5	blat.proc3829887.chain_1896	1
scaffold_4	alt_acceptor	19348492	19348493	-	asmbl_42183	none	STRG.5515.2	1	STRG.5515.1	1
scaffold_13	starts_in_intron	2659110	2659110	-	asmbl_9432	none	Trinity_GG_25692_c0_g1_i3,blat.proc3829895.chain_239	2	STRG.15557.1,blat.proc3829895.chain_237,blat.proc3829895.chain_240	3
scaffold_5	retained_intron	15031404	15031492	-	asmbl_46013	none	blat.proc3829889.chain_2687	1	STRG.6687.1,blat.proc3829889.chain_2685	2
scaffold_10	alternate_exon	635414	635702	-	asmbl_2891	none	STRG.11933.2,blat.proc3829893.chain_377	2	STRG.11933.1,blat.proc3829893.chain_378	2
scaffold_6	starts_in_intron	8173203	8173203	-	asmbl_48471,asmbl_48481	none	blat.proc3829889.chain_3715,blat.proc3829889.chain_3723	2	STRG.7691.1,STRG.7691.2,Trinity_GG_21366_c0_g1_i3,blat.proc3829889.chain_3713,blat.proc3829889.chain_3716,blat.proc3829889.chain_3717,blat.proc3829889.chain_3719,blat.proc3829889.chain_3720,blat.proc3829889.chain_3721,blat.proc3829889.chain_3724	10
scaffold_1	starts_in_intron	11800133	11800133	-	asmbl_681	none	blat.proc3829887.chain_692	1	STRG.794.1,STRG.794.3,blat.proc3829887.chain_691	3
scaffold_1	retained_exon	22371428	22371747	+	asmbl_2679	none	STRG.1490.1	1	STRG.1490.3,STRG.1490.5	2
scaffold_1210	alternate_exon	1838	1895	-	asmbl_9230	none	STRG.30539.2	1	STRG.30539.1	1
scaffold_28	spliced_intron	4875335	4875549	-	asmbl_37549,asmbl_37550	none	STRG.29625.1,Trinity_GG_33590_c0_g1_i3,Trinity_GG_33590_c0_g1_i4,blat.proc3829901.chain_2706,blat.proc3829901.chain_2707	5	Trinity_GG_33590_c1_g1_i1,blat.proc3829901.chain_2709	2
scaffold_12	starts_in_intron	6471187	6471187	-	asmbl_7671	none	blat.proc3829893.chain_3137	1	STRG.14733.1,blat.proc3829893.chain_3138	2
scaffold_12	alt_acceptor	9234562	9234563	-	asmbl_7787,asmbl_7788,asmbl_7791,asmbl_7792,asmbl_7793,asmbl_7794,asmbl_7795,asmbl_7797,asmbl_7798	none	STRG.14912.2,STRG.14912.5,STRG.14912.6,STRG.14912.7,STRG.14912.8,blat.proc3829893.chain_3298,blat.proc3829893.chain_3301,blat.proc3829893.chain_3304,blat.proc3829893.chain_3305,blat.proc3829893.chain_3307	10	STRG.14912.3,STRG.14912.4,blat.proc3829893.chain_3300	3
scaffold_16	starts_in_intron	9893910	9893910	-	asmbl_16477	none	blat.proc3829897.chain_589	1	STRG.19565.1,blat.proc3829897.chain_590	2
scaffold_10	retained_intron	5687106	5687347	+	asmbl_4470	none	STRG.12387.2,blat.proc3829877.chain_1042	2	STRG.12387.1,STRG.12387.3,blat.proc3829877.chain_1043	3
scaffold_8	retained_exon	17454425	17454460	+	asmbl_52466	none	STRG.10660.2,Trinity_GG_5884_c0_g1_i5,blat.proc3829875.chain_3085	3	STRG.10660.1,Trinity_GG_5884_c0_g1_i2,blat.proc3829875.chain_3086	3
scaffold_1	spliced_intron	15303957	15304040	+	asmbl_2419	none	STRG.1093.1,Trinity_GG_640_c0_g1_i1,blat.proc3829871.chain_1165	3	Trinity_GG_640_c0_g1_i2,Trinity_GG_640_c0_g1_i3,blat.proc3829871.chain_1163,blat.proc3829871.chain_1164	4
scaffold_16	starts_in_intron	13918680	13918680	+	asmbl_17466	none	Trinity_GG_10845_c0_g1_i1,blat.proc3829881.chain_642	2	STRG.19775.1,Trinity_GG_10845_c0_g1_i2,blat.proc3829881.chain_643	3
scaffold_1	retained_intron	20354313	20354546	+	asmbl_2613	none	STRG.1398.10	1	STRG.1398.2,STRG.1398.3,STRG.1398.4,STRG.1398.5,STRG.1398.6,STRG.1398.9	6
scaffold_4	spliced_intron	19357212	19357317	-	asmbl_42187,asmbl_42190	none	blat.proc3829889.chain_1609,blat.proc3829889.chain_1617	2	STRG.5528.1,blat.proc3829889.chain_1612,blat.proc3829889.chain_1613	3
scaffold_20	starts_in_intron	7459164	7459164	-	asmbl_26821	none	STRG.23295.2,blat.proc3829899.chain_355	2	STRG.23295.1,blat.proc3829899.chain_356	2
scaffold_23	starts_in_intron	6285376	6285376	+	asmbl_30904	none	blat.proc3829883.chain_2824	1	STRG.25953.1,blat.proc3829883.chain_2825	2
scaffold_14	ends_in_intron	3164692	3164692	+	asmbl_11887	none	Trinity_GG_9302_c2_g1_i1	1	STRG.16893.1,STRG.16893.2,STRG.16893.4,blat.proc3829879.chain_1641,blat.proc3829879.chain_1642	5
scaffold_20	spliced_intron	11948483	11948717	-	asmbl_27135,asmbl_27136	none	blat.proc3829899.chain_605,blat.proc3829899.chain_606	2	STRG.23687.3,blat.proc3829899.chain_604	2
scaffold_20	alternate_exon	11672272	11672642	-	asmbl_27103	none	blat.proc3829899.chain_651	1	STRG.23656.1,blat.proc3829899.chain_652	2
scaffold_26	spliced_intron	9843220	9843385	+	asmbl_35808,asmbl_35815,asmbl_35817	none	STRG.28526.1,blat.proc3829885.chain_1557,blat.proc3829885.chain_1559	3	blat.proc3829885.chain_1566	1
scaffold_2	alt_acceptor	16357946	16357947	+	asmbl_25151,asmbl_25152,asmbl_25153,asmbl_25154	none	STRG.2573.1,STRG.2573.2,STRG.2573.4,Trinity_GG_1455_c0_g1_i3,blat.proc3829871.chain_2758,blat.proc3829871.chain_2759,blat.proc3829871.chain_2761	7	STRG.2573.3,blat.proc3829871.chain_2760	2
scaffold_5	alt_acceptor	7409170	7409171	-	asmbl_45558	none	STRG.6135.1	1	STRG.6135.2,STRG.6135.3	2
scaffold_4	alt_acceptor	5106679	5106680	-	asmbl_41292	none	STRG.4404.1,blat.proc3829889.chain_513	2	STRG.4404.2	1
scaffold_7	spliced_intron	12727956	12728043	+	asmbl_51175	none	STRG.9377.1,blat.proc3829875.chain_1838	2	blat.proc3829875.chain_1839	1
scaffold_18	alternate_exon	9169964	9170005	+	asmbl_20905	none	Trinity_GG_11916_c0_g1_i1,blat.proc3829881.chain_2538	2	STRG.21549.2,STRG.21549.3,Trinity_GG_11916_c0_g1_i2,blat.proc3829881.chain_2540	4
scaffold_16	alt_acceptor	4077930	4077931	+	asmbl_16957	none	STRG.19212.2	1	STRG.19212.1,blat.proc3829881.chain_2,blat.proc3829881.chain_3	3
scaffold_14	alt_donor	6671796	6671797	-	asmbl_13132	none	STRG.17097.1,blat.proc3829895.chain_1800	2	STRG.17097.2,blat.proc3829895.chain_1799	2
scaffold_5	alternate_exon	4678979	4688616	-	asmbl_45370,asmbl_45372	none	STRG.5919.1,STRG.5919.4,Trinity_GG_20363_c2_g1_i1,Trinity_GG_20363_c2_g1_i2,blat.proc3829889.chain_2029,blat.proc3829889.chain_2037,blat.proc3829889.chain_2038	7	blat.proc3829889.chain_2034	1
scaffold_26	skipped_exon	6350865	6351295	-	asmbl_34957	none	STRG.28315.4	1	STRG.28315.2,STRG.28315.3,STRG.28315.5,blat.proc3829901.chain_1403,blat.proc3829901.chain_1404,blat.proc3829901.chain_1406	6
scaffold_1	starts_in_intron	3620826	3620826	+	asmbl_1614	none	blat.proc3829871.chain_281	1	STRG.224.1,blat.proc3829871.chain_280,blat.proc3829871.chain_282	3
scaffold_18	retained_intron	823178	823278	+	asmbl_20353	none	Trinity_GG_11513_c0_g1_i7,blat.proc3829881.chain_1780	2	STRG.20996.1,STRG.20996.2,blat.proc3829881.chain_1778,blat.proc3829881.chain_1779,blat.proc3829881.chain_1781,blat.proc3829881.chain_1782	6
scaffold_13	retained_exon	10434518	10434625	+	asmbl_11224	none	STRG.16236.2,blat.proc3829879.chain_970	2	STRG.16236.1,STRG.16236.3,STRG.16236.4,blat.proc3829879.chain_969,blat.proc3829879.chain_971	5
scaffold_14	alt_donor	8414409	8414410	-	asmbl_13296	none	STRG.17263.2,blat.proc3829895.chain_1970	2	STRG.17263.1,blat.proc3829895.chain_1969	2
scaffold_4	spliced_intron	8746476	8746565	+	asmbl_42908,asmbl_42910	none	STRG.4689.1,blat.proc3829873.chain_1036	2	Trinity_GG_2591_c0_g1_i4,blat.proc3829873.chain_1033	2
scaffold_4	alt_donor	16871809	16871810	-	asmbl_41976,asmbl_41978,asmbl_41979,asmbl_41980	none	STRG.5279.1,STRG.5279.2,STRG.5279.3,blat.proc3829889.chain_1280,blat.proc3829889.chain_1282	5	STRG.5279.4	1
scaffold_15	retained_intron	15189220	15189525	+	asmbl_14674,asmbl_14680,asmbl_14685,asmbl_14686,asmbl_14689	none	blat.proc3829879.chain_3472,blat.proc3829879.chain_3477,blat.proc3829879.chain_3478,blat.proc3829879.chain_3480,blat.proc3829879.chain_3485,blat.proc3829879.chain_3486	6	STRG.18906.1,STRG.18906.3,blat.proc3829879.chain_3471,blat.proc3829879.chain_3474,blat.proc3829879.chain_3475,blat.proc3829879.chain_3476,blat.proc3829879.chain_3479,blat.proc3829879.chain_3481,blat.proc3829879.chain_3482,blat.proc3829879.chain_3484	10
scaffold_4	alternate_exon	16659266	16661305	+	asmbl_43331	none	blat.proc3829873.chain_1483	1	Trinity_GG_2887_c0_g1_i1,blat.proc3829873.chain_1486	2
scaffold_17	alt_acceptor	3295291	3295292	+	asmbl_17842	none	STRG.20099.1,Trinity_GG_11014_c0_g1_i1,blat.proc3829881.chain_927	3	STRG.20099.2	1
scaffold_2	starts_in_intron	5445830	5445830	+	asmbl_24446	none	Trinity_GG_1088_c0_g1_i5,blat.proc3829871.chain_1989	2	STRG.1951.1,STRG.1951.2,STRG.1951.3,blat.proc3829871.chain_1988,blat.proc3829871.chain_1990	5
scaffold_10	retained_intron	3065944	3066072	-	asmbl_3071,asmbl_3074	none	blat.proc3829893.chain_572,blat.proc3829893.chain_573	2	STRG.12119.2,STRG.12119.3,blat.proc3829893.chain_570,blat.proc3829893.chain_571	4
scaffold_11	starts_in_intron	9198160	9198160	-	asmbl_6907	none	blat.proc3829893.chain_2287	1	STRG.13944.1,blat.proc3829893.chain_2288	2
scaffold_4	spliced_intron	13183547	13184043	-	asmbl_41724,asmbl_41725,asmbl_41726	none	STRG.4963.1,STRG.4963.2,STRG.4963.3,blat.proc3829889.chain_1036,blat.proc3829889.chain_1037,blat.proc3829889.chain_1038	6	blat.proc3829889.chain_1035	1
scaffold_6	spliced_intron	12413720	12414317	-	asmbl_48740	none	STRG.7990.3	1	STRG.7990.1,STRG.7990.2,STRG.7990.4,STRG.7990.5,blat.proc3829891.chain_292,blat.proc3829891.chain_293,blat.proc3829891.chain_294	7
scaffold_16	spliced_intron	4017628	4017730	-	asmbl_16205,asmbl_16207	none	STRG.19207.1,blat.proc3829897.chain_143,blat.proc3829897.chain_145	3	blat.proc3829897.chain_144	1
scaffold_1	alt_acceptor	20687704	20687705	-	asmbl_1188	none	blat.proc3829887.chain_1289	1	STRG.1408.1	1
scaffold_24	retained_exon	4375882	4376765	+	asmbl_32210	none	STRG.26580.1,Trinity_GG_14699_c1_g1_i1,blat.proc3829883.chain_3479	3	STRG.26580.2	1
scaffold_28	retained_intron	4562120	4562213	-	asmbl_37538	none	STRG.29610.2,Trinity_GG_33600_c0_g1_i3,blat.proc3829901.chain_2727	3	STRG.29610.1,Trinity_GG_33600_c0_g1_i1,Trinity_GG_33600_c0_g1_i4,blat.proc3829901.chain_2725,blat.proc3829901.chain_2726	5
scaffold_7	alt_donor	31390	31391	+	asmbl_50415	none	STRG.8577.2,blat.proc3829875.chain_1007	2	STRG.8577.1	1
scaffold_5	retained_intron	7320452	7320503	+	asmbl_44155	none	Trinity_GG_3345_c0_g2_i1	1	STRG.6121.1,blat.proc3829873.chain_2277	2
scaffold_3	ends_in_intron	13721040	13721040	-	asmbl_39245	none	Trinity_GG_19028_c0_g1_i4,blat.proc3829887.chain_3447	2	STRG.3718.1,Trinity_GG_19028_c0_g1_i2,Trinity_GG_19028_c0_g1_i3,Trinity_GG_19028_c0_g1_i5,blat.proc3829887.chain_3445,blat.proc3829887.chain_3446,blat.proc3829887.chain_3448	7
scaffold_11	alt_acceptor	3764394	3764395	+	asmbl_5420	none	STRG.13487.1,STRG.13487.2,blat.proc3829877.chain_1919	3	STRG.13487.3	1
scaffold_6	starts_in_intron	3056262	3056262	+	asmbl_46753	none	blat.proc3829873.chain_3442	1	STRG.7308.1,STRG.7308.2,blat.proc3829873.chain_3438,blat.proc3829873.chain_3439,blat.proc3829873.chain_3440,blat.proc3829873.chain_3444,blat.proc3829873.chain_3445,blat.proc3829873.chain_3446	8
scaffold_18	retained_exon	7867647	7867749	+	asmbl_20824,asmbl_20828	none	STRG.21477.1,Trinity_GG_11877_c0_g1_i12,blat.proc3829881.chain_2474,blat.proc3829881.chain_2475	4	STRG.21477.5,blat.proc3829881.chain_2470	2
scaffold_7	alt_acceptor	7440465	7440466	+	asmbl_50807	none	STRG.8986.1,blat.proc3829875.chain_1390	2	STRG.8986.2	1
scaffold_8	alternate_exon	16503929	16504493	-	asmbl_53409	none	Trinity_GG_22960_c0_g1_i9,blat.proc3829891.chain_2858	2	STRG.10621.3,STRG.10621.4,STRG.10621.5,Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2860,blat.proc3829891.chain_2863,blat.proc3829891.chain_2864,blat.proc3829891.chain_2867,blat.proc3829891.chain_2868,blat.proc3829891.chain_2869,blat.proc3829891.chain_2870	15
scaffold_3	spliced_intron	12465871	12466558	-	asmbl_39167	none	STRG.3637.2,Trinity_GG_19005_c0_g1_i1,blat.proc3829887.chain_3406	3	STRG.3637.1,blat.proc3829887.chain_3405	2
scaffold_20	alt_donor	1624143	1624144	-	asmbl_26523	none	STRG.22888.3	1	STRG.22888.1,STRG.22888.2	2
scaffold_14	retained_intron	3161005	3161274	+	asmbl_11889	none	blat.proc3829879.chain_1640	1	STRG.16893.1,STRG.16893.2,STRG.16893.3,blat.proc3829879.chain_1625,blat.proc3829879.chain_1626,blat.proc3829879.chain_1629,blat.proc3829879.chain_1631,blat.proc3829879.chain_1632,blat.proc3829879.chain_1633,blat.proc3829879.chain_1635,blat.proc3829879.chain_1636,blat.proc3829879.chain_1639	12
scaffold_19	spliced_intron	8872484	8872914	-	asmbl_21522	none	STRG.22329.1,blat.proc3829897.chain_3066	2	blat.proc3829897.chain_3065	1
scaffold_15	retained_intron	9004560	9004735	-	asmbl_15386	none	STRG.18434.1,blat.proc3829895.chain_3126	2	STRG.18434.3,blat.proc3829895.chain_3125	2
scaffold_1	alt_donor	19006561	19006562	+	asmbl_2560	none	STRG.1322.2	1	STRG.1322.3	1
scaffold_13	spliced_intron	2334729	2334832	+	asmbl_10571,asmbl_10589,asmbl_10591	none	STRG.15543.4,STRG.15543.8,STRG.15543.9,blat.proc3829879.chain_175	4	STRG.15543.5,Trinity_GG_8511_c1_g1_i3,blat.proc3829879.chain_166	3
scaffold_10	alternate_exon	13779093	13779487	-	asmbl_3837	none	STRG.12968.2	1	blat.proc3829893.chain_1503	1
scaffold_3	starts_in_intron	14807323	14807323	-	asmbl_39379	none	blat.proc3829887.chain_3573	1	STRG.3821.1,blat.proc3829887.chain_3571,blat.proc3829887.chain_3572	3
scaffold_19	ends_in_intron	9533888	9533888	+	asmbl_22411	none	STRG.22379.3,blat.proc3829881.chain_3229	2	STRG.22379.1,STRG.22379.2,blat.proc3829881.chain_3227,blat.proc3829881.chain_3228	4
scaffold_12	alt_donor	4983771	4983772	+	asmbl_8585	none	STRG.14656.2,Trinity_GG_8053_c0_g1_i3,blat.proc3829877.chain_3087,blat.proc3829877.chain_3088	4	STRG.14656.1,blat.proc3829877.chain_3082,blat.proc3829877.chain_3086	3
scaffold_8	spliced_intron	4899967	4900064	+	asmbl_51860,asmbl_51861,asmbl_51866	none	STRG.9952.1,STRG.9952.2,blat.proc3829875.chain_2364,blat.proc3829875.chain_2365	4	blat.proc3829875.chain_2366	1
scaffold_14	alternate_exon	9998340	9998998	-	asmbl_13383,asmbl_13384,asmbl_13385	none	blat.proc3829895.chain_2060,blat.proc3829895.chain_2062,blat.proc3829895.chain_2063	3	STRG.17356.2,Trinity_GG_26738_c0_g1_i1,blat.proc3829895.chain_2059	3
scaffold_9	skipped_exon	15495374	15496423	-	asmbl_55497	none	STRG.11737.3,blat.proc3829893.chain_117	2	STRG.11737.1,blat.proc3829893.chain_120	2
scaffold_2	alternate_exon	16080197	16080230	-	asmbl_23679,asmbl_23681	none	STRG.2557.1,STRG.2557.2,blat.proc3829887.chain_2393	3	STRG.2557.3	1
scaffold_15	spliced_intron	15907550	15907932	-	asmbl_15822,asmbl_15823,asmbl_15824,asmbl_15826	none	STRG.18963.1,Trinity_GG_27666_c0_g1_i3,Trinity_GG_27666_c0_g1_i4,Trinity_GG_27666_c0_g1_i8,Trinity_GG_27666_c0_g1_i9,blat.proc3829895.chain_3732,blat.proc3829895.chain_3733,blat.proc3829895.chain_3734,blat.proc3829895.chain_3736	9	Trinity_GG_27666_c0_g1_i1,Trinity_GG_27666_c0_g1_i5,blat.proc3829895.chain_3735,blat.proc3829895.chain_3737	4
scaffold_14	alt_donor	6283692	6283693	+	asmbl_12034	none	STRG.17063.2,blat.proc3829879.chain_1740,blat.proc3829879.chain_1742	3	STRG.17063.1,STRG.17063.7,blat.proc3829879.chain_1739,blat.proc3829879.chain_1744,blat.proc3829879.chain_1746	5
scaffold_7	spliced_intron	12437984	12438059	+	asmbl_51143,asmbl_51144	none	STRG.9337.1,STRG.9337.2,blat.proc3829875.chain_1797	3	blat.proc3829875.chain_1796	1
scaffold_6	alternate_exon	15797470	15798040	+	asmbl_47612	none	STRG.8309.3,blat.proc3829875.chain_650	2	STRG.8309.1,blat.proc3829875.chain_649	2
scaffold_10	skipped_exon	16822304	16824535	+	asmbl_5000	none	STRG.13115.1	1	STRG.13115.2	1
scaffold_23	spliced_intron	5583740	5583837	+	asmbl_30884	none	STRG.25912.4	1	STRG.25912.3,blat.proc3829883.chain_2729	2
scaffold_2074	alt_donor	920	921	-	asmbl_27281	none	STRG.30677.2	1	STRG.30677.1	1
scaffold_5	ends_in_intron	1565519	1565519	+	asmbl_43797	none	Trinity_GG_3110_c1_g1_i1	1	STRG.5707.1	1
scaffold_28	alternate_exon	5230264	5230319	-	asmbl_37579	none	Trinity_GG_33578_c0_g1_i6,blat.proc3829901.chain_2675	2	STRG.29650.1,STRG.29650.2,Trinity_GG_33578_c0_g1_i9,blat.proc3829901.chain_2671,blat.proc3829901.chain_2672,blat.proc3829901.chain_2673,blat.proc3829901.chain_2674	7
scaffold_25	starts_in_intron	7339241	7339241	+	asmbl_33666	none	blat.proc3829885.chain_596	1	STRG.27571.1,STRG.27571.2,STRG.27571.3,Trinity_GG_15205_c0_g1_i3,blat.proc3829885.chain_597,blat.proc3829885.chain_598	6
scaffold_13	spliced_intron	2271926	2272065	-	asmbl_9400,asmbl_9401,asmbl_9402,asmbl_9406	none	STRG.15533.1,STRG.15533.2,STRG.15533.3,blat.proc3829895.chain_309,blat.proc3829895.chain_311,blat.proc3829895.chain_313,blat.proc3829895.chain_316	7	Trinity_GG_25734_c0_g1_i5,blat.proc3829895.chain_308,blat.proc3829895.chain_310,blat.proc3829895.chain_312,blat.proc3829895.chain_317	5
scaffold_16	spliced_intron	6195012	6195163	+	asmbl_17084,asmbl_17085,asmbl_17087,asmbl_17088,asmbl_17089,asmbl_17090,asmbl_17091,asmbl_17092,asmbl_17093	none	STRG.19373.1,STRG.19373.2,STRG.19373.3,STRG.19373.4,blat.proc3829881.chain_125,blat.proc3829881.chain_126,blat.proc3829881.chain_127,blat.proc3829881.chain_128,blat.proc3829881.chain_129,blat.proc3829881.chain_130,blat.proc3829881.chain_131	11	Trinity_GG_10552_c0_g1_i1,blat.proc3829881.chain_124	2
scaffold_1	starts_in_intron	10408020	10408020	-	asmbl_589	none	blat.proc3829887.chain_599	1	STRG.674.1,STRG.674.2,blat.proc3829887.chain_598,blat.proc3829887.chain_600,blat.proc3829887.chain_601	5
scaffold_2	spliced_intron	7241458	7241574	+	asmbl_24591	none	blat.proc3829871.chain_2172	1	blat.proc3829871.chain_2165,blat.proc3829871.chain_2166,blat.proc3829871.chain_2168	3
scaffold_24	alt_acceptor	10335054	10335055	+	asmbl_32556,asmbl_32558	none	STRG.26974.1,STRG.26974.2,blat.proc3829885.chain_11	3	blat.proc3829885.chain_10	1
scaffold_25	alt_acceptor	2979597	2979598	-	asmbl_34070	none	STRG.27225.2	1	STRG.27225.1,blat.proc3829901.chain_536	2
scaffold_4	alternate_exon	16661783	16661882	+	asmbl_43327	none	Trinity_GG_2887_c0_g1_i1,blat.proc3829873.chain_1486	2	STRG.5252.2,blat.proc3829873.chain_1483,blat.proc3829873.chain_1485	3
scaffold_14	retained_intron	3152638	3152817	+	asmbl_11894,asmbl_11897	none	blat.proc3829879.chain_1629,blat.proc3829879.chain_1636	2	STRG.16893.1,STRG.16893.2,STRG.16893.3,blat.proc3829879.chain_1625,blat.proc3829879.chain_1626,blat.proc3829879.chain_1628,blat.proc3829879.chain_1630,blat.proc3829879.chain_1631,blat.proc3829879.chain_1632,blat.proc3829879.chain_1634,blat.proc3829879.chain_1635,blat.proc3829879.chain_1638	12
scaffold_20	alternate_exon	2645235	2645354	-	asmbl_26588	none	STRG.22997.1	1	STRG.22997.2	1
scaffold_12	spliced_intron	14045126	14045229	-	asmbl_8094,asmbl_8096	none	STRG.15216.4,blat.proc3829893.chain_3659	2	STRG.15216.2,STRG.15216.3,blat.proc3829893.chain_3658,blat.proc3829893.chain_3662	4
scaffold_5	retained_intron	16206282	16206597	+	asmbl_44718	none	blat.proc3829873.chain_2888	1	STRG.6800.1,blat.proc3829873.chain_2889,blat.proc3829873.chain_2890,blat.proc3829873.chain_2891	4
scaffold_20	spliced_intron	8394496	8394623	-	asmbl_26915	none	STRG.23376.2,blat.proc3829899.chain_428	2	STRG.23376.1,blat.proc3829899.chain_427	2
scaffold_23	starts_in_intron	9886212	9886212	+	asmbl_31100	none	Trinity_GG_14461_c0_g1_i4,blat.proc3829883.chain_3073	2	STRG.26167.1,blat.proc3829883.chain_3074,blat.proc3829883.chain_3075	3
scaffold_8	alt_acceptor	10863196	10863197	-	asmbl_53121	none	STRG.10304.2	1	STRG.10304.1,STRG.10304.3,blat.proc3829891.chain_2485	3
scaffold_28	spliced_intron	5024052	5024125	+	asmbl_38258,asmbl_38260,asmbl_38266	none	STRG.29640.1,STRG.29640.2,blat.proc3829885.chain_2641,blat.proc3829885.chain_2642	4	STRG.29640.3,Trinity_GG_16373_c2_g1_i2,blat.proc3829885.chain_2640,blat.proc3829885.chain_2643	4
scaffold_11	retained_intron	147614	147643	-	asmbl_6349	none	STRG.13230.2	1	blat.proc3829893.chain_1699	1
scaffold_7	spliced_intron	12278830	12278991	+	asmbl_51117,asmbl_51120	none	STRG.9315.1,blat.proc3829875.chain_1776,blat.proc3829875.chain_1779	3	blat.proc3829875.chain_1777	1
scaffold_23	spliced_intron	2647054	2647286	+	asmbl_30718	none	STRG.25713.1,blat.proc3829883.chain_2635	2	blat.proc3829883.chain_2634	1
scaffold_26	alt_donor	1323198	1323199	-	asmbl_34676	none	STRG.27898.2,blat.proc3829901.chain_1144	2	STRG.27898.1,STRG.27898.3,STRG.27898.4,blat.proc3829901.chain_1143	4
scaffold_13	retained_intron	3352902	3353012	-	asmbl_9496	none	blat.proc3829895.chain_389	1	STRG.15631.2	1
scaffold_14	starts_in_intron	177079	177079	-	asmbl_12768,asmbl_12769	none	STRG.16696.2,blat.proc3829895.chain_1364	2	STRG.16696.1,blat.proc3829895.chain_1362	2
scaffold_21	retained_exon	7117027	7117148	+	asmbl_28729	none	STRG.24224.1,Trinity_GG_13420_c0_g1_i1,blat.proc3829883.chain_1369	3	STRG.24224.2	1
scaffold_3	ends_in_intron	3270419	3270419	-	asmbl_38722	none	blat.proc3829887.chain_2793	1	STRG.3088.1,STRG.3088.2,blat.proc3829887.chain_2794,blat.proc3829887.chain_2796	4
scaffold_16	starts_in_intron	4092404	4092404	+	asmbl_16964	none	STRG.19214.2	1	STRG.19214.1	1
scaffold_8	starts_in_intron	10134713	10134713	+	asmbl_52136	none	STRG.10260.2	1	STRG.10260.1,Trinity_GG_5705_c0_g1_i1,blat.proc3829875.chain_2763	3
scaffold_5	retained_exon	2608955	2608996	+	asmbl_43853	none	STRG.5778.1,blat.proc3829873.chain_1904	2	blat.proc3829873.chain_1902	1
scaffold_24	spliced_intron	5882035	5882303	-	asmbl_32895,asmbl_32896,asmbl_32898,asmbl_32899	none	STRG.26634.1,STRG.26634.2,STRG.26634.3,blat.proc3829899.chain_3709,blat.proc3829899.chain_3710,blat.proc3829899.chain_3711,blat.proc3829899.chain_3713	7	STRG.26634.4,STRG.26634.5,blat.proc3829899.chain_3712	3
scaffold_11	spliced_intron	4756929	4757259	+	asmbl_5480,asmbl_5482	none	STRG.13564.1,blat.proc3829877.chain_2053,blat.proc3829877.chain_2054	3	Trinity_GG_7461_c1_g1_i1,blat.proc3829877.chain_2055	2
scaffold_19	retained_intron	13266345	13266432	-	asmbl_21856	none	blat.proc3829897.chain_3423	1	STRG.22633.1,blat.proc3829897.chain_3424	2
scaffold_2	ends_in_intron	32383	32383	+	asmbl_24076,asmbl_24077	none	blat.proc3829871.chain_1521,blat.proc3829871.chain_1524	2	STRG.1493.1,STRG.1493.3,blat.proc3829871.chain_1525,blat.proc3829871.chain_1527	4
scaffold_5	ends_in_intron	6046037	6046037	+	asmbl_44054	none	blat.proc3829873.chain_2210	1	STRG.6017.1,blat.proc3829873.chain_2211	2
scaffold_17	ends_in_intron	2566265	2566265	+	asmbl_17794	none	blat.proc3829881.chain_838	1	STRG.20039.1,STRG.20039.2,Trinity_GG_10964_c0_g1_i5,blat.proc3829881.chain_839,blat.proc3829881.chain_840,blat.proc3829881.chain_841	6
scaffold_28	retained_intron	5390808	5391169	+	asmbl_38280	none	STRG.29664.4,Trinity_GG_16450_c0_g1_i3,blat.proc3829885.chain_2785	3	Trinity_GG_16450_c0_g1_i9,blat.proc3829885.chain_2787	2
scaffold_8	starts_in_intron	6115757	6115757	+	asmbl_51932	none	blat.proc3829875.chain_2524	1	STRG.10007.1,STRG.10007.2,Trinity_GG_5582_c0_g1_i2,Trinity_GG_5582_c0_g1_i7,blat.proc3829875.chain_2523,blat.proc3829875.chain_2527	6
scaffold_8	alt_acceptor	18161549	18161550	-	asmbl_53524,asmbl_53525	none	Trinity_GG_22981_c0_g1_i6,Trinity_GG_22981_c0_g1_i8,blat.proc3829891.chain_2909,blat.proc3829891.chain_2910	4	STRG.10720.1,Trinity_GG_22981_c0_g1_i1,Trinity_GG_22981_c0_g1_i2,Trinity_GG_22981_c0_g1_i9,blat.proc3829891.chain_2907,blat.proc3829891.chain_2908,blat.proc3829891.chain_2911,blat.proc3829891.chain_2912,blat.proc3829891.chain_2913	9
scaffold_21	starts_in_intron	10039940	10039940	-	asmbl_28031	none	blat.proc3829899.chain_1486	1	STRG.24460.1,STRG.24460.2,blat.proc3829899.chain_1487	3
scaffold_15	ends_in_intron	3686645	3686645	-	asmbl_15122	none	blat.proc3829895.chain_2893	1	STRG.18132.2,STRG.18132.3,blat.proc3829895.chain_2892,blat.proc3829895.chain_2894	4
scaffold_16	starts_in_intron	10448835	10448835	+	asmbl_17337	none	Trinity_GG_10708_c0_g1_i1,blat.proc3829881.chain_425	2	STRG.19602.2,STRG.19602.4,STRG.19602.5	3
scaffold_15	starts_in_intron	2822330	2822330	-	asmbl_15059	none	blat.proc3829895.chain_2768	1	STRG.18058.2	1
scaffold_8	ends_in_intron	17495474	17495474	+	asmbl_52470	none	STRG.10668.2,Trinity_GG_5917_c1_g1_i1,blat.proc3829875.chain_3160	3	STRG.10668.1,STRG.10668.3,blat.proc3829875.chain_3152,blat.proc3829875.chain_3153,blat.proc3829875.chain_3156,blat.proc3829875.chain_3157,blat.proc3829875.chain_3158	7
scaffold_9	alt_donor	12631095	12631096	+	asmbl_54435	none	STRG.11574.4	1	STRG.11574.3	1
scaffold_2	skipped_exon	14342781	14343126	-	asmbl_23612	none	blat.proc3829887.chain_2307	1	STRG.2433.1,blat.proc3829887.chain_2305	2
scaffold_21	retained_intron	9866643	9866822	-	asmbl_27999	none	STRG.24438.1	1	STRG.24438.3	1
scaffold_7	alternate_exon	4045835	4046120	-	asmbl_49661	none	STRG.8793.3,blat.proc3829891.chain_1137	2	STRG.8793.1,blat.proc3829891.chain_1134	2
scaffold_9	starts_in_intron	5219996	5219996	+	asmbl_53986	none	STRG.11094.3,blat.proc3829875.chain_3503	2	STRG.11094.1,STRG.11094.2	2
scaffold_7	alt_acceptor	9864323	9864324	-	asmbl_49903,asmbl_49904	none	STRG.9178.4,blat.proc3829891.chain_1416	2	STRG.9178.1,STRG.9178.3,blat.proc3829891.chain_1419	3
scaffold_1	spliced_intron	3493880	3494497	-	asmbl_146,asmbl_147,asmbl_149,asmbl_150,asmbl_154,asmbl_155,asmbl_156,asmbl_158	none	STRG.217.1,STRG.217.2,STRG.217.3,blat.proc3829887.chain_114,blat.proc3829887.chain_116,blat.proc3829887.chain_117,blat.proc3829887.chain_123,blat.proc3829887.chain_124,blat.proc3829887.chain_125	9	blat.proc3829887.chain_118,blat.proc3829887.chain_119,blat.proc3829887.chain_120,blat.proc3829887.chain_121	4
scaffold_9	ends_in_intron	10278340	10278340	+	asmbl_54270	none	blat.proc3829877.chain_86	1	STRG.11361.1,blat.proc3829877.chain_87	2
scaffold_17	spliced_intron	538675	539184	+	asmbl_17671,asmbl_17672	none	STRG.19892.1,STRG.19892.4	2	STRG.19892.3,blat.proc3829881.chain_739,blat.proc3829881.chain_740	3
scaffold_24	retained_intron	6432265	6432478	-	asmbl_32949	none	blat.proc3829899.chain_3723	1	STRG.26677.1,blat.proc3829899.chain_3722	2
scaffold_27	ends_in_intron	7456115	7456115	+	asmbl_36412	none	blat.proc3829885.chain_2226	1	STRG.29085.1,blat.proc3829885.chain_2225	2
scaffold_14	alt_donor	7495217	7495218	+	asmbl_12148	none	STRG.17177.3	1	STRG.17177.1,blat.proc3829879.chain_1838	2
scaffold_4	retained_intron	16912206	16912492	+	asmbl_43350	none	STRG.5280.3	1	STRG.5280.1	1
scaffold_9	alternate_exon	15540143	15540249	+	asmbl_54552	none	STRG.11736.1	1	blat.proc3829877.chain_482	1
scaffold_9	alt_acceptor	13039798	13039799	+	asmbl_54460	none	STRG.11605.1,blat.proc3829877.chain_398	2	STRG.11605.2	1
scaffold_3	retained_intron	11404737	11404768	+	asmbl_40303	none	Trinity_GG_2022_c0_g1_i1	1	STRG.3567.2	1
scaffold_3	spliced_intron	13899490	13899649	+	asmbl_40424,asmbl_40426,asmbl_40427,asmbl_40428	none	STRG.3737.1,STRG.3737.2,blat.proc3829873.chain_143,blat.proc3829873.chain_144,blat.proc3829873.chain_145	5	Trinity_GG_2095_c0_g1_i4,blat.proc3829873.chain_142	2
scaffold_8	retained_exon	12027368	12027452	+	asmbl_52293	none	STRG.10394.1,Trinity_GG_5804_c0_g1_i3,blat.proc3829875.chain_2930	3	Trinity_GG_5804_c0_g1_i2,blat.proc3829875.chain_2932	2
scaffold_10	spliced_intron	3065795	3066072	-	asmbl_3069	none	STRG.12119.1,Trinity_GG_23763_c0_g1_i2,blat.proc3829893.chain_569	3	blat.proc3829893.chain_573	1
scaffold_16	retained_intron	8663515	8663601	-	asmbl_16428	none	STRG.19481.2	1	STRG.19481.1	1
scaffold_2	alt_donor	2890147	2890148	-	asmbl_22956,asmbl_22958,asmbl_22962,asmbl_22963,asmbl_22965	none	STRG.1733.2,STRG.1733.3,blat.proc3829887.chain_1492,blat.proc3829887.chain_1495,blat.proc3829887.chain_1497,blat.proc3829887.chain_1498,blat.proc3829887.chain_1500	7	STRG.1733.1,STRG.1733.4,blat.proc3829887.chain_1493,blat.proc3829887.chain_1494	4
scaffold_27	alt_donor	5927612	5927613	-	asmbl_37001	none	blat.proc3829901.chain_2166	1	STRG.28980.1,STRG.28980.2,blat.proc3829901.chain_2163	3
scaffold_23	spliced_intron	2151002	2151100	-	asmbl_31413,asmbl_31415	none	STRG.25664.1,STRG.25664.2,blat.proc3829899.chain_2766	3	STRG.25664.3,blat.proc3829899.chain_2767	2
scaffold_2	ends_in_intron	168418	168418	+	asmbl_24100	none	Trinity_GG_883_c0_g1_i6,blat.proc3829871.chain_1598	2	STRG.1523.1,STRG.1523.2,blat.proc3829871.chain_1595,blat.proc3829871.chain_1597,blat.proc3829871.chain_1599	5
scaffold_14	retained_intron	11572188	11574063	-	asmbl_13482	none	STRG.17490.2,Trinity_GG_26806_c0_g1_i8	2	STRG.17490.5,blat.proc3829895.chain_2173,blat.proc3829895.chain_2180	3
scaffold_7	alt_acceptor	4035762	4035763	+	asmbl_50588,asmbl_50590	none	STRG.8788.2,Trinity_GG_4801_c0_g1_i3,blat.proc3829875.chain_1152	3	STRG.8788.1,Trinity_GG_4801_c0_g1_i1,Trinity_GG_4801_c0_g1_i4,blat.proc3829875.chain_1153,blat.proc3829875.chain_1154	5
scaffold_12	starts_in_intron	10187288	10187288	-	asmbl_7866,asmbl_7867	none	blat.proc3829893.chain_3399,blat.proc3829893.chain_3404	2	STRG.14979.1,STRG.14979.2,STRG.14979.3,STRG.14979.4,STRG.14979.5,STRG.14979.6,blat.proc3829893.chain_3400,blat.proc3829893.chain_3401,blat.proc3829893.chain_3402,blat.proc3829893.chain_3403,blat.proc3829893.chain_3405	11
scaffold_8	spliced_intron	7986635	7986847	-	asmbl_52931,asmbl_52932,asmbl_52934	none	STRG.10092.1,STRG.10092.2,Trinity_GG_22656_c0_g1_i5,blat.proc3829891.chain_2261,blat.proc3829891.chain_2262,blat.proc3829891.chain_2265	6	Trinity_GG_22656_c0_g1_i6,blat.proc3829891.chain_2263,blat.proc3829891.chain_2264	3
scaffold_5	spliced_intron	17210337	17210461	-	asmbl_46171,asmbl_46173,asmbl_46174	none	STRG.6885.1,blat.proc3829889.chain_2912,blat.proc3829889.chain_2914,blat.proc3829889.chain_2915	4	STRG.6885.2,blat.proc3829889.chain_2913	2
scaffold_24	ends_in_intron	3755997	3755997	-	asmbl_32836	none	blat.proc3829899.chain_3606	1	STRG.26554.1,STRG.26554.2,blat.proc3829899.chain_3608	3
scaffold_24	spliced_intron	8737299	8737413	-	asmbl_33085,asmbl_33087,asmbl_33088,asmbl_33091	none	STRG.26873.1,blat.proc3829901.chain_169,blat.proc3829901.chain_170,blat.proc3829901.chain_171,blat.proc3829901.chain_172	5	STRG.26873.2,blat.proc3829901.chain_173	2
scaffold_2	starts_in_intron	15487710	15487710	+	asmbl_25077,asmbl_25080	none	STRG.2499.4,blat.proc3829871.chain_2698,blat.proc3829871.chain_2699	3	STRG.2499.1,STRG.2499.2,STRG.2499.3,blat.proc3829871.chain_2700	4
scaffold_14	starts_in_intron	6592529	6592529	+	asmbl_12068	none	Trinity_GG_9395_c0_g1_i1,blat.proc3829879.chain_1798	2	STRG.17092.1,STRG.17092.2,blat.proc3829879.chain_1796,blat.proc3829879.chain_1797	4
scaffold_13	ends_in_intron	397227	397227	-	asmbl_9314,asmbl_9315	none	blat.proc3829895.chain_220,blat.proc3829895.chain_222	2	STRG.15428.1,STRG.15428.2,STRG.15428.3,Trinity_GG_25691_c0_g1_i10,Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i25,Trinity_GG_25691_c0_g1_i7,Trinity_GG_25691_c0_g1_i8,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_221,blat.proc3829895.chain_223,blat.proc3829895.chain_224,blat.proc3829895.chain_226,blat.proc3829895.chain_228,blat.proc3829895.chain_229,blat.proc3829895.chain_230,blat.proc3829895.chain_232,blat.proc3829895.chain_233	21
scaffold_1	alternate_exon	3565059	3565329	+	asmbl_1603	none	STRG.219.2,blat.proc3829871.chain_222	2	STRG.219.1,blat.proc3829871.chain_221	2
scaffold_1	alt_acceptor	5962592	5962593	-	asmbl_308	none	STRG.395.1,blat.proc3829887.chain_271	2	blat.proc3829887.chain_270	1
scaffold_14	alternate_exon	8400813	8401138	-	asmbl_13286	none	STRG.17262.1	1	STRG.17262.2,blat.proc3829895.chain_1979,blat.proc3829895.chain_1981	3
scaffold_13	starts_in_intron	6434359	6434359	-	asmbl_9749,asmbl_9750,asmbl_9752	none	STRG.15922.2,blat.proc3829895.chain_710,blat.proc3829895.chain_712,blat.proc3829895.chain_715	4	STRG.15922.1,blat.proc3829895.chain_713	2
scaffold_4	ends_in_intron	5775031	5775031	-	asmbl_41379	none	Trinity_GG_19525_c0_g1_i2	1	STRG.4473.1,STRG.4473.2,Trinity_GG_19525_c0_g1_i1,blat.proc3829889.chain_588,blat.proc3829889.chain_589	5
scaffold_6	alternate_exon	12994820	12998579	-	asmbl_48804	none	STRG.8061.5,blat.proc3829891.chain_273	2	STRG.8061.6,STRG.8061.8,Trinity_GG_21547_c0_g1_i18,Trinity_GG_21547_c0_g1_i2,Trinity_GG_21547_c0_g1_i7,blat.proc3829891.chain_265,blat.proc3829891.chain_267,blat.proc3829891.chain_269	8
scaffold_12	alt_acceptor	16182445	16182446	-	asmbl_8245	none	STRG.15358.3,Trinity_GG_25619_c0_g1_i1,blat.proc3829895.chain_85	3	STRG.15358.1,STRG.15358.2,Trinity_GG_25619_c0_g1_i2,blat.proc3829895.chain_84	4
scaffold_20	starts_in_intron	4480426	4480426	-	asmbl_26654	none	STRG.23113.3,blat.proc3829899.chain_64	2	STRG.23113.1,STRG.23113.2,blat.proc3829899.chain_58,blat.proc3829899.chain_59	4
scaffold_12	alt_acceptor	4105335	4105336	+	asmbl_8542	none	STRG.14584.3	1	STRG.14584.1	1
scaffold_14	alt_donor	2887918	2887919	-	asmbl_12964	none	STRG.16870.2,blat.proc3829895.chain_1571	2	STRG.16870.4,Trinity_GG_26461_c0_g1_i1,blat.proc3829895.chain_1572	3
scaffold_2	alt_donor	5200440	5200441	+	asmbl_24423,asmbl_24425	none	STRG.1940.1,Trinity_GG_1078_c0_g1_i3,Trinity_GG_1078_c0_g1_i5,blat.proc3829871.chain_1968,blat.proc3829871.chain_1970	5	STRG.1940.2,Trinity_GG_1078_c0_g1_i2,blat.proc3829871.chain_1969	3
scaffold_3	spliced_intron	6218352	6218491	-	asmbl_38874	none	STRG.3276.2,blat.proc3829887.chain_2936	2	Trinity_GG_18752_c0_g2_i1,blat.proc3829887.chain_2937	2
scaffold_5	starts_in_intron	11914252	11914252	+	asmbl_44444	none	blat.proc3829873.chain_2599	1	STRG.6437.1,STRG.6437.2,blat.proc3829873.chain_2597,blat.proc3829873.chain_2598	4
scaffold_21	spliced_intron	8920825	8921417	+	asmbl_28849	none	STRG.24399.1	1	STRG.24399.2,Trinity_GG_13512_c0_g1_i2,blat.proc3829883.chain_1511,blat.proc3829883.chain_1512	4
scaffold_1	alt_acceptor	4615202	4615203	+	asmbl_1681,asmbl_1683	none	STRG.295.3,STRG.295.4	2	STRG.295.1,STRG.295.2,blat.proc3829871.chain_329	3
scaffold_15	starts_in_intron	7183020	7183020	-	asmbl_15298	none	blat.proc3829895.chain_2966	1	STRG.18300.2,blat.proc3829895.chain_2965	2
scaffold_8	spliced_intron	16539028	16539118	-	asmbl_53433,asmbl_53437	none	STRG.10629.1,blat.proc3829891.chain_2801,blat.proc3829891.chain_2802	3	blat.proc3829891.chain_2800	1
scaffold_17	alt_donor	3233713	3233714	-	asmbl_18852	none	STRG.20093.1,blat.proc3829897.chain_1051	2	STRG.20093.2,blat.proc3829897.chain_1052	2
scaffold_7	starts_in_intron	17808396	17808396	+	asmbl_51388	none	blat.proc3829875.chain_2104	1	STRG.9616.1,blat.proc3829875.chain_2097,blat.proc3829875.chain_2098,blat.proc3829875.chain_2099,blat.proc3829875.chain_2100,blat.proc3829875.chain_2102,blat.proc3829875.chain_2103,blat.proc3829875.chain_2105	8
scaffold_7	spliced_intron	5916256	5916585	-	asmbl_49711,asmbl_49712,asmbl_49713,asmbl_49715,asmbl_49717	none	STRG.8887.1,STRG.8887.3,STRG.8887.4,STRG.8887.5,Trinity_GG_22041_c0_g1_i6,blat.proc3829891.chain_1163,blat.proc3829891.chain_1164,blat.proc3829891.chain_1165,blat.proc3829891.chain_1166	9	Trinity_GG_22041_c1_g1_i1,blat.proc3829891.chain_1170	2
scaffold_20	alt_donor	2844722	2844723	-	asmbl_26600	none	STRG.23005.4,blat.proc3829899.chain_24	2	STRG.23005.1,blat.proc3829899.chain_22,blat.proc3829899.chain_23	3
scaffold_13	starts_in_intron	12095537	12095537	+	asmbl_11313	none	blat.proc3829879.chain_1060	1	STRG.16333.1,blat.proc3829879.chain_1058	2
scaffold_4	spliced_intron	19674267	19674337	-	asmbl_42238	none	STRG.5555.1	1	STRG.5555.2	1
scaffold_6	starts_in_intron	5017605	5017605	-	asmbl_48324	none	STRG.7474.1,blat.proc3829889.chain_3487	2	STRG.7474.2	1
scaffold_7	ends_in_intron	15289186	15289186	+	asmbl_51323	none	Trinity_GG_5309_c0_g1_i4,blat.proc3829875.chain_2022	2	STRG.9534.1	1
scaffold_3	alt_donor	10628316	10628317	+	asmbl_40235	none	STRG.3509.1,blat.proc3829871.chain_3608	2	STRG.3509.2,STRG.3509.3,blat.proc3829871.chain_3604,blat.proc3829871.chain_3605,blat.proc3829871.chain_3606,blat.proc3829871.chain_3607	6
scaffold_24	alt_donor	10486702	10486703	+	asmbl_32574,asmbl_32579	none	STRG.27000.4,Trinity_GG_14920_c0_g1_i6,blat.proc3829885.chain_127	3	STRG.27000.1,STRG.27000.2,STRG.27000.5,Trinity_GG_14920_c0_g1_i2,Trinity_GG_14920_c0_g1_i4,Trinity_GG_14920_c0_g1_i5,blat.proc3829885.chain_126,blat.proc3829885.chain_128,blat.proc3829885.chain_129	9
scaffold_15	alt_donor	6793982	6793983	+	asmbl_14207,asmbl_14208	none	STRG.18289.2,STRG.18289.3,Trinity_GG_10013_c0_g1_i1,blat.proc3829879.chain_2887	4	STRG.18289.1,Trinity_GG_10013_c0_g1_i2,blat.proc3829879.chain_2888	3
scaffold_28	retained_intron	2729367	2729694	-	asmbl_37404	none	blat.proc3829901.chain_2555	1	STRG.29439.1,blat.proc3829901.chain_2554	2
scaffold_4	starts_in_intron	13820558	13820558	+	asmbl_43162	none	Trinity_GG_2804_c0_g1_i1,blat.proc3829873.chain_1359	2	STRG.5008.1,blat.proc3829873.chain_1358	2
scaffold_27	ends_in_intron	3051557	3051557	+	asmbl_36137	none	blat.proc3829885.chain_1837	1	STRG.28768.1,blat.proc3829885.chain_1836	2
scaffold_26	alternate_exon	1323200	1329585	-	asmbl_34676	none	STRG.27898.2,blat.proc3829901.chain_1144	2	blat.proc3829901.chain_1142	1
scaffold_18	alt_donor	8400595	8400596	+	asmbl_20857	none	STRG.21503.1,blat.proc3829881.chain_2515	2	STRG.21503.2	1
scaffold_6	alternate_exon	14472061	14472120	-	asmbl_48946	none	STRG.8201.3	1	STRG.8201.2,Trinity_GG_21657_c0_g1_i2,blat.proc3829891.chain_489	3
scaffold_4	starts_in_intron	13824403	13824403	-	asmbl_41755	none	blat.proc3829889.chain_1058	1	STRG.5009.1,STRG.5009.2,STRG.5009.3,blat.proc3829889.chain_1059,blat.proc3829889.chain_1060	5
scaffold_6	alternate_exon	5777860	5777952	-	asmbl_48371	none	STRG.7528.2,blat.proc3829889.chain_3596	2	STRG.7528.1,blat.proc3829889.chain_3597	2
scaffold_5	alt_donor	14711421	14711422	+	asmbl_44628,asmbl_44630	none	STRG.6666.1,Trinity_GG_3634_c0_g1_i1,blat.proc3829873.chain_2783,blat.proc3829873.chain_2784	4	STRG.6666.3,blat.proc3829873.chain_2785	2
scaffold_1	alt_donor	5207308	5207309	+	asmbl_1703	none	STRG.323.3	1	STRG.323.1,blat.proc3829871.chain_390,blat.proc3829871.chain_391,blat.proc3829871.chain_392,blat.proc3829871.chain_394	5
scaffold_2	alt_acceptor	3708372	3708373	+	asmbl_24325	none	STRG.1802.3	1	STRG.1802.1	1
scaffold_9	starts_in_intron	3381694	3381694	-	asmbl_54859	none	blat.proc3829891.chain_3131	1	STRG.10938.1	1
scaffold_8	spliced_intron	18421281	18421426	+	asmbl_52540	none	STRG.10733.1,blat.proc3829875.chain_3214	2	STRG.10733.2,blat.proc3829875.chain_3215	2
scaffold_7	alt_donor	4177692	4177693	+	asmbl_50600,asmbl_50602	none	STRG.8807.1,blat.proc3829875.chain_1170,blat.proc3829875.chain_1171	3	STRG.8807.2,STRG.8807.3	2
scaffold_14	retained_exon	14387178	14387238	+	asmbl_12531	none	STRG.17683.1	1	STRG.17683.2	1
scaffold_500	retained_intron	2115	2216	+	asmbl_46444,asmbl_46445,asmbl_46447,asmbl_46448,asmbl_46449	none	STRG.30347.1,STRG.30347.3,Trinity_GG_16793_c0_g1_i10,blat.proc3829885.chain_3361,blat.proc3829885.chain_3362,blat.proc3829885.chain_3363	6	STRG.30347.2,STRG.30347.4,blat.proc3829885.chain_3357,blat.proc3829885.chain_3358	4
scaffold_643	retained_intron	1289	1370	-	asmbl_49430	none	blat.proc3829901.chain_3439	1	STRG.30389.1,STRG.30389.2	2
scaffold_14	retained_exon	7495943	7496652	+	asmbl_12146	none	STRG.17177.1,blat.proc3829879.chain_1838	2	STRG.17177.3	1
scaffold_9	starts_in_intron	3671221	3671221	-	asmbl_54887	none	blat.proc3829891.chain_3089	1	STRG.10971.1,STRG.10971.3,blat.proc3829891.chain_3078,blat.proc3829891.chain_3082,blat.proc3829891.chain_3084,blat.proc3829891.chain_3085	6
scaffold_24	retained_exon	4284977	4285033	-	asmbl_32855	none	STRG.26567.2	1	STRG.26567.1,blat.proc3829899.chain_3633	2
scaffold_11	alternate_exon	4333202	4335988	-	asmbl_6576	none	STRG.13521.3	1	STRG.13521.1,blat.proc3829893.chain_1998,blat.proc3829893.chain_2001	3
scaffold_22	alt_donor	2399110	2399111	+	asmbl_29233,asmbl_29234,asmbl_29235	none	STRG.24765.2,blat.proc3829883.chain_1745,blat.proc3829883.chain_1746	3	STRG.24765.1,blat.proc3829883.chain_1744	2
scaffold_4	spliced_intron	7090983	7091175	+	asmbl_42795	none	STRG.4545.2	1	STRG.4545.1,STRG.4545.4	2
scaffold_26	spliced_intron	3361453	3361585	+	asmbl_35304	none	STRG.28006.2,blat.proc3829885.chain_898	2	blat.proc3829885.chain_899	1
scaffold_15	spliced_intron	5144744	5144821	+	asmbl_14133,asmbl_14135	none	STRG.18208.1,blat.proc3829879.chain_2838,blat.proc3829879.chain_2839	3	blat.proc3829879.chain_2836	1
scaffold_11	starts_in_intron	5920996	5920996	+	asmbl_5557,asmbl_5558	none	STRG.13651.2,blat.proc3829877.chain_2072	2	STRG.13651.1,blat.proc3829877.chain_2073	2
scaffold_4	retained_exon	4096330	4096420	+	asmbl_42543,asmbl_42544,asmbl_42545,asmbl_42546,asmbl_42547,asmbl_42553	none	STRG.4313.1,STRG.4313.2,STRG.4313.3,STRG.4313.4,blat.proc3829873.chain_631,blat.proc3829873.chain_632,blat.proc3829873.chain_635,blat.proc3829873.chain_636	8	blat.proc3829873.chain_634	1
scaffold_21	retained_intron	6818231	6818419	+	asmbl_28719	none	blat.proc3829883.chain_1301	1	STRG.24196.1,blat.proc3829883.chain_1300,blat.proc3829883.chain_1302,blat.proc3829883.chain_1303,blat.proc3829883.chain_1304	5
scaffold_1	alt_donor	11098565	11098566	+	asmbl_2049	none	STRG.729.2	1	STRG.729.1,blat.proc3829871.chain_781	2
scaffold_5	alt_acceptor	6618025	6618026	-	asmbl_45504,asmbl_45507	none	STRG.6060.1,blat.proc3829889.chain_2129,blat.proc3829889.chain_2130	3	STRG.6060.2	1
scaffold_16	retained_intron	11664164	11664277	+	asmbl_17400	none	STRG.19673.2	1	STRG.19673.1,blat.proc3829881.chain_560,blat.proc3829881.chain_561	3
scaffold_1	spliced_intron	16478498	16478746	-	asmbl_992,asmbl_993	none	STRG.1157.1,STRG.1157.2,blat.proc3829887.chain_1053,blat.proc3829887.chain_1057	4	blat.proc3829887.chain_1054	1
scaffold_9	spliced_intron	18394317	18394385	-	asmbl_55665	none	STRG.11880.1,blat.proc3829893.chain_282	2	blat.proc3829893.chain_281	1
scaffold_10	retained_intron	8894400	8894642	-	asmbl_3532	none	blat.proc3829893.chain_1128	1	STRG.12629.1,blat.proc3829893.chain_1127,blat.proc3829893.chain_1129,blat.proc3829893.chain_1130,blat.proc3829893.chain_1131,blat.proc3829893.chain_1132,blat.proc3829893.chain_1133,blat.proc3829893.chain_1134,blat.proc3829893.chain_1135,blat.proc3829893.chain_1136	10
scaffold_10	retained_intron	5856417	5856955	-	asmbl_3312	none	blat.proc3829893.chain_870	1	STRG.12401.1,STRG.12401.2,STRG.12401.3,blat.proc3829893.chain_872	4
scaffold_16	retained_exon	11335261	11335310	+	asmbl_17382	none	STRG.19652.1,blat.proc3829881.chain_553	2	STRG.19652.2	1
scaffold_2	retained_intron	9322220	9323761	-	asmbl_23401	none	STRG.2176.3	1	STRG.2176.4	1
scaffold_11	alt_acceptor	170916	170917	+	asmbl_5217	none	STRG.13231.5	1	STRG.13231.1,STRG.13231.2,STRG.13231.4	3
scaffold_15	alt_donor	1260909	1260910	+	asmbl_13935,asmbl_13936,asmbl_13938	none	STRG.17926.1,STRG.17926.2,Trinity_GG_9856_c0_g1_i1,blat.proc3829879.chain_2600,blat.proc3829879.chain_2601	5	STRG.17926.3,blat.proc3829879.chain_2602	2
scaffold_14	alt_acceptor	7999487	7999488	+	asmbl_12161	none	STRG.17198.2	1	STRG.17198.1,STRG.17198.3,Trinity_GG_9470_c0_g1_i1,blat.proc3829879.chain_1937,blat.proc3829879.chain_1938	5
scaffold_27	starts_in_intron	3747728	3747728	+	asmbl_36182	none	Trinity_GG_15925_c0_g1_i2,blat.proc3829885.chain_1863	2	STRG.28817.1	1
scaffold_5	retained_intron	5972142	5972548	+	asmbl_44044	none	STRG.6001.1	1	blat.proc3829873.chain_2174	1
scaffold_15	ends_in_intron	12420941	12420941	+	asmbl_14500	none	Trinity_GG_10258_c0_g1_i6,blat.proc3829879.chain_3269	2	STRG.18687.1,blat.proc3829879.chain_3268,blat.proc3829879.chain_3270,blat.proc3829879.chain_3271,blat.proc3829879.chain_3272,blat.proc3829879.chain_3273	6
scaffold_4	starts_in_intron	16809154	16809154	-	asmbl_41969	none	blat.proc3829889.chain_1264	1	STRG.5268.1,Trinity_GG_19929_c0_g1_i1,blat.proc3829889.chain_1263,blat.proc3829889.chain_1266	4
scaffold_28	spliced_intron	9681871	9681946	+	asmbl_38496,asmbl_38497	none	STRG.29979.1,blat.proc3829885.chain_3038,blat.proc3829885.chain_3040,blat.proc3829885.chain_3041	4	blat.proc3829885.chain_3039	1
scaffold_6	alt_donor	13148460	13148461	-	asmbl_48822	none	STRG.8066.1,Trinity_GG_21598_c0_g1_i2,blat.proc3829891.chain_367	3	STRG.8066.2,Trinity_GG_21598_c0_g1_i1,blat.proc3829891.chain_368	3
scaffold_13	retained_intron	7217965	7219584	+	asmbl_11006	none	STRG.16002.2,Trinity_GG_8782_c0_g1_i1,blat.proc3829879.chain_697	3	STRG.16002.1,blat.proc3829879.chain_695,blat.proc3829879.chain_698,blat.proc3829879.chain_699,blat.proc3829879.chain_700,blat.proc3829879.chain_701	6
scaffold_1	starts_in_intron	18486118	18486118	-	asmbl_1112	none	STRG.1300.1	1	STRG.1300.2,STRG.1300.3,blat.proc3829887.chain_1210,blat.proc3829887.chain_1211,blat.proc3829887.chain_1212	5
scaffold_24	starts_in_intron	6091916	6091916	-	asmbl_32918	none	blat.proc3829899.chain_3649	1	blat.proc3829899.chain_3650	1
scaffold_19	alt_donor	12958375	12958376	-	asmbl_21775,asmbl_21777	none	Trinity_GG_29572_c0_g1_i6,Trinity_GG_29572_c0_g1_i7,blat.proc3829897.chain_3292,blat.proc3829897.chain_3295	4	STRG.22600.1	1
scaffold_7	spliced_intron	6042675	6042946	-	asmbl_49723	none	STRG.8899.5	1	STRG.8899.1,Trinity_GG_22045_c0_g1_i2	2
scaffold_23	spliced_intron	362282	362408	-	asmbl_31319	none	blat.proc3829899.chain_2649	1	STRG.25543.1,STRG.25543.4,STRG.25543.5,Trinity_GG_31299_c0_g1_i4,blat.proc3829899.chain_2650,blat.proc3829899.chain_2654,blat.proc3829899.chain_2655	7
scaffold_15	retained_exon	12009315	12009379	-	asmbl_15570	none	STRG.18635.1,blat.proc3829895.chain_3343	2	STRG.18635.2,blat.proc3829895.chain_3341	2
scaffold_7	spliced_intron	1235347	1235447	+	asmbl_50479,asmbl_50480	none	STRG.8627.5,blat.proc3829875.chain_1043	2	STRG.8627.2,STRG.8627.6,STRG.8627.8,Trinity_GG_4740_c0_g1_i13,Trinity_GG_4740_c0_g1_i14,blat.proc3829875.chain_1044,blat.proc3829875.chain_1045,blat.proc3829875.chain_1048,blat.proc3829875.chain_1049	9
scaffold_23	retained_intron	7982619	7982719	+	asmbl_31043	none	blat.proc3829883.chain_2988	1	STRG.26088.1	1
scaffold_11	alt_acceptor	13094446	13094447	+	asmbl_6000,asmbl_6001,asmbl_6006,asmbl_6007	none	STRG.14176.1,STRG.14176.3,blat.proc3829877.chain_2671,blat.proc3829877.chain_2672,blat.proc3829877.chain_2674,blat.proc3829877.chain_2678	6	STRG.14176.2,blat.proc3829877.chain_2673	2
scaffold_4	spliced_intron	16912391	16912492	+	asmbl_43346	none	STRG.5280.2	1	STRG.5280.3	1
scaffold_1	starts_in_intron	19845992	19845992	+	asmbl_2587	none	Trinity_GG_791_c1_g1_i1,blat.proc3829871.chain_1398	2	STRG.1362.2	1
scaffold_1	alt_acceptor	8606076	8606077	-	asmbl_462	none	STRG.564.1,Trinity_GG_17309_c0_g1_i1,blat.proc3829887.chain_441	3	STRG.564.2	1
scaffold_4	alt_acceptor	11305441	11305442	+	asmbl_43035	none	STRG.4829.2	1	STRG.4829.1,blat.proc3829873.chain_1147	2
scaffold_2	alt_acceptor	16362797	16362798	+	asmbl_25159,asmbl_25160	none	STRG.2574.3,STRG.2574.4	2	STRG.2574.1,Trinity_GG_1456_c0_g1_i1,Trinity_GG_1456_c0_g1_i2,blat.proc3829871.chain_2762,blat.proc3829871.chain_2764	5
scaffold_24	spliced_intron	9128917	9129415	+	asmbl_32522	none	STRG.26921.2,blat.proc3829885.chain_9	2	STRG.26921.1,blat.proc3829885.chain_8	2
scaffold_19	spliced_intron	12242887	12242971	+	asmbl_22573,asmbl_22574	none	STRG.22541.1,blat.proc3829881.chain_3477,blat.proc3829881.chain_3479	3	Trinity_GG_12467_c0_g1_i6,blat.proc3829881.chain_3478	2
scaffold_13	starts_in_intron	4605109	4605109	-	asmbl_9602	none	STRG.15781.2	1	STRG.15781.1,Trinity_GG_25880_c0_g1_i1,blat.proc3829895.chain_530	3
scaffold_7	alt_donor	9784423	9784424	-	asmbl_49879	none	STRG.9164.4	1	STRG.9164.1,STRG.9164.2,STRG.9164.3,blat.proc3829891.chain_1403,blat.proc3829891.chain_1404	5
scaffold_13	starts_in_intron	6295308	6295308	+	asmbl_10903	none	STRG.15910.3,blat.proc3829879.chain_563	2	STRG.15910.1,STRG.15910.2,blat.proc3829879.chain_559,blat.proc3829879.chain_560,blat.proc3829879.chain_561,blat.proc3829879.chain_562	6
scaffold_4	retained_intron	4120774	4120939	-	asmbl_41234,asmbl_41235	none	STRG.4323.3,Trinity_GG_19456_c0_g1_i2,Trinity_GG_19456_c0_g1_i5,blat.proc3829889.chain_474,blat.proc3829889.chain_475,blat.proc3829889.chain_477	6	STRG.4323.1,STRG.4323.2,blat.proc3829889.chain_476	3
scaffold_2	retained_intron	17838616	17838702	-	asmbl_23771	none	blat.proc3829887.chain_2496	1	STRG.2671.1,blat.proc3829887.chain_2495	2
scaffold_6	alternate_exon	12207708	12207811	+	asmbl_47320	none	STRG.7982.2,Trinity_GG_4376_c0_g1_i3,blat.proc3829875.chain_384	3	STRG.7982.1,Trinity_GG_4376_c0_g1_i1,Trinity_GG_4376_c0_g1_i4,blat.proc3829875.chain_383,blat.proc3829875.chain_386	5
scaffold_4	starts_in_intron	12438555	12438555	+	asmbl_43055	none	Trinity_GG_2722_c0_g1_i2,blat.proc3829873.chain_1220	2	STRG.4882.2,blat.proc3829873.chain_1221	2
scaffold_6	starts_in_intron	6870617	6870617	+	asmbl_46952	none	Trinity_GG_4144_c0_g1_i7,blat.proc3829873.chain_3680	2	STRG.7585.1,STRG.7585.2,STRG.7585.3,blat.proc3829873.chain_3677,blat.proc3829873.chain_3678,blat.proc3829873.chain_3679	6
scaffold_1	retained_intron	14427728	14428504	-	asmbl_928	none	STRG.1042.2,blat.proc3829887.chain_961	2	STRG.1042.3,blat.proc3829887.chain_963	2
scaffold_24	ends_in_intron	6224599	6224599	-	asmbl_32930,asmbl_32931	none	Trinity_GG_31899_c1_g1_i2,blat.proc3829899.chain_3697	2	STRG.26664.1,blat.proc3829899.chain_3686,blat.proc3829899.chain_3687,blat.proc3829899.chain_3690,blat.proc3829899.chain_3693,blat.proc3829899.chain_3695,blat.proc3829899.chain_3696	7
scaffold_1	alt_donor	13930079	13930080	-	asmbl_869	none	STRG.998.1	1	STRG.998.2	1
scaffold_10	retained_exon	6598212	6598281	-	asmbl_3394	none	STRG.12472.2	1	STRG.12472.1,blat.proc3829893.chain_937,blat.proc3829893.chain_938	3
scaffold_5	spliced_intron	11991739	11992176	-	asmbl_45815	none	STRG.6447.5	1	STRG.6447.4,blat.proc3829889.chain_2519,blat.proc3829889.chain_2520	3
scaffold_25	starts_in_intron	3084542	3084542	-	asmbl_34077	none	blat.proc3829901.chain_492	1	STRG.27230.1,STRG.27230.2,STRG.27230.3,blat.proc3829901.chain_488,blat.proc3829901.chain_489,blat.proc3829901.chain_490	6
scaffold_5	alternate_exon	7027808	7027834	+	asmbl_44136	none	STRG.6108.2	1	STRG.6108.1	1
scaffold_2	alt_donor	6761637	6761638	-	asmbl_23259,asmbl_23260	none	STRG.2030.1,STRG.2030.4,blat.proc3829887.chain_1919	3	STRG.2030.2,blat.proc3829887.chain_1920	2
scaffold_13	spliced_intron	2270481	2270608	-	asmbl_9400,asmbl_9401,asmbl_9402,asmbl_9403,asmbl_9405	none	STRG.15533.1,STRG.15533.2,STRG.15533.3,blat.proc3829895.chain_308,blat.proc3829895.chain_311,blat.proc3829895.chain_317	6	blat.proc3829895.chain_310	1
scaffold_7	spliced_intron	12387302	12387428	-	asmbl_50013,asmbl_50015,asmbl_50016,asmbl_50017,asmbl_50018,asmbl_50019,asmbl_50020	none	STRG.9328.1,blat.proc3829891.chain_1531,blat.proc3829891.chain_1532,blat.proc3829891.chain_1533,blat.proc3829891.chain_1534,blat.proc3829891.chain_1535,blat.proc3829891.chain_1536,blat.proc3829891.chain_1538	8	blat.proc3829891.chain_1537	1
scaffold_11	starts_in_intron	3032159	3032159	-	asmbl_6501	none	blat.proc3829893.chain_1907	1	STRG.13422.1,blat.proc3829893.chain_1906	2
scaffold_18	alt_donor	12403783	12403784	-	asmbl_20173	none	STRG.21698.1,blat.proc3829897.chain_2490	2	STRG.21698.2,blat.proc3829897.chain_2489,blat.proc3829897.chain_2491	3
scaffold_13	alternate_exon	903026	903690	-	asmbl_9337,asmbl_9338	none	STRG.15448.2,STRG.15448.7,Trinity_GG_25690_c0_g1_i6,blat.proc3829895.chain_217	4	STRG.15448.1,STRG.15448.3,STRG.15448.4,STRG.15448.5,STRG.15448.6,blat.proc3829895.chain_212,blat.proc3829895.chain_213,blat.proc3829895.chain_214,blat.proc3829895.chain_215	9
scaffold_7	alt_acceptor	8508685	8508686	+	asmbl_50884,asmbl_50889	none	STRG.9068.5,blat.proc3829875.chain_1526	2	STRG.9068.1,blat.proc3829875.chain_1527	2
scaffold_13	starts_in_intron	15372014	15372014	+	asmbl_11482	none	STRG.16571.2	1	STRG.16571.1	1
scaffold_11	alternate_exon	11637327	11637401	+	asmbl_5951,asmbl_5953	none	blat.proc3829877.chain_2571,blat.proc3829877.chain_2574	2	STRG.14080.1,blat.proc3829877.chain_2568,blat.proc3829877.chain_2570,blat.proc3829877.chain_2572	4
scaffold_11	retained_intron	9950767	9950860	-	asmbl_6949	none	blat.proc3829893.chain_2419	1	STRG.14010.2	1
scaffold_3	alt_donor	19407398	19407399	-	asmbl_39595,asmbl_39597	none	STRG.4084.3,blat.proc3829889.chain_158	2	STRG.4084.1,blat.proc3829889.chain_155,blat.proc3829889.chain_157	3
scaffold_7	alternate_exon	4045044	4045550	-	asmbl_49663	none	STRG.8793.1	1	STRG.8793.3,blat.proc3829891.chain_1137	2
scaffold_1	alternate_exon	11445097	11445204	+	asmbl_2099	none	STRG.750.2,blat.proc3829871.chain_797	2	STRG.750.1,blat.proc3829871.chain_796	2
scaffold_13	retained_exon	3613390	3613446	-	asmbl_9520	none	blat.proc3829895.chain_342	1	STRG.15665.2,blat.proc3829895.chain_341	2
scaffold_24	starts_in_intron	7174910	7174910	-	asmbl_33006	none	blat.proc3829901.chain_4	1	STRG.26749.1,STRG.26749.2	2
scaffold_2174	retained_intron	1221	1252	-	asmbl_29074	none	STRG.30694.2	1	STRG.30694.1	1
scaffold_3026	retained_intron	362	614	+	asmbl_40860	none	STRG.30791.2,blat.proc3829885.chain_3636	2	STRG.30791.3	1
scaffold_5	alt_donor	7739945	7739946	+	asmbl_44168	none	STRG.6144.2	1	STRG.6144.1,STRG.6144.3,blat.proc3829873.chain_2302	3
scaffold_27	retained_intron	2786649	2786780	+	asmbl_36067	none	Trinity_GG_15895_c0_g1_i6,blat.proc3829885.chain_1754	2	STRG.28736.1,blat.proc3829885.chain_1753,blat.proc3829885.chain_1755,blat.proc3829885.chain_1756	4
scaffold_12	starts_in_intron	4721689	4721689	-	asmbl_7565	none	blat.proc3829893.chain_3006	1	STRG.14636.1	1
scaffold_14	retained_intron	12752822	12753014	-	asmbl_13581,asmbl_13582,asmbl_13584	none	STRG.17572.2,STRG.17572.3,blat.proc3829895.chain_2350,blat.proc3829895.chain_2352,blat.proc3829895.chain_2354	5	STRG.17572.1,blat.proc3829895.chain_2351	2
scaffold_21	alternate_exon	3125921	3126244	-	asmbl_27542	none	STRG.23930.3,blat.proc3829899.chain_978	2	STRG.23930.1,blat.proc3829899.chain_980	2
scaffold_19	starts_in_intron	5457887	5457887	-	asmbl_21372	none	blat.proc3829897.chain_2869	1	STRG.22096.1,STRG.22096.2,blat.proc3829897.chain_2868,blat.proc3829897.chain_2870	4
scaffold_15	ends_in_intron	9815990	9815990	+	asmbl_14359	none	blat.proc3829879.chain_3048	1	STRG.18487.1,STRG.18487.2,blat.proc3829879.chain_3043,blat.proc3829879.chain_3044,blat.proc3829879.chain_3046,blat.proc3829879.chain_3047	6
scaffold_12	retained_intron	5635890	5636032	-	asmbl_7646	none	STRG.14701.2	1	STRG.14701.1,blat.proc3829893.chain_3064,blat.proc3829893.chain_3065,blat.proc3829893.chain_3066	4
scaffold_18	spliced_intron	7648011	7649078	+	asmbl_20786	none	STRG.21454.2	1	STRG.21454.1,Trinity_GG_11854_c0_g1_i1,blat.proc3829881.chain_2423,blat.proc3829881.chain_2424	4
scaffold_27	retained_intron	2049473	2049594	+	asmbl_36025	none	blat.proc3829885.chain_1706	1	STRG.28673.1,blat.proc3829885.chain_1707,blat.proc3829885.chain_1708	3
scaffold_7	alt_acceptor	688290	688291	+	asmbl_50436,asmbl_50437	none	STRG.8594.1,STRG.8594.2	2	STRG.8594.4	1
scaffold_17	retained_exon	2355383	2356400	+	asmbl_17766	none	STRG.20017.4	1	blat.proc3829881.chain_853	1
scaffold_25	alternate_exon	7340858	7343655	+	asmbl_33667	none	STRG.27572.1,blat.proc3829885.chain_549	2	STRG.27572.3	1
scaffold_19	retained_intron	3560904	3561075	+	asmbl_22125,asmbl_22126,asmbl_22127	none	STRG.22033.3,STRG.22033.4,Trinity_GG_12191_c0_g1_i2,Trinity_GG_12191_c1_g1_i1,blat.proc3829881.chain_2992,blat.proc3829881.chain_2993,blat.proc3829881.chain_2997	7	STRG.22033.1	1
scaffold_1	ends_in_intron	4574867	4574867	-	asmbl_200	none	Trinity_GG_17147_c2_g1_i1,blat.proc3829887.chain_142	2	STRG.277.1,blat.proc3829887.chain_133,blat.proc3829887.chain_135,blat.proc3829887.chain_137	4
scaffold_5	retained_intron	1548461	1548523	-	asmbl_45249	none	Trinity_GG_20236_c0_g1_i4,blat.proc3829889.chain_1822,blat.proc3829901.chain_3397,blat.proc3829901.chain_3398	4	STRG.5706.2	1
scaffold_2	starts_in_intron	13959534	13959534	-	asmbl_23561	none	blat.proc3829887.chain_2279	1	STRG.2383.1,STRG.2383.2,blat.proc3829887.chain_2278	3
scaffold_23	starts_in_intron	7416630	7416630	-	asmbl_31749	none	blat.proc3829899.chain_3144	1	STRG.26041.1,blat.proc3829899.chain_3143	2
scaffold_500	retained_intron	1334	1449	+	asmbl_46445,asmbl_46451	none	blat.proc3829885.chain_3364,blat.proc3829885.chain_3368	2	blat.proc3829885.chain_3365,blat.proc3829885.chain_3367	2
scaffold_21	retained_intron	233295	233468	-	asmbl_27310	none	Trinity_GG_30226_c0_g1_i1,blat.proc3829899.chain_759	2	STRG.23713.1,Trinity_GG_30226_c0_g1_i2,blat.proc3829899.chain_760	3
scaffold_27	alt_acceptor	3019973	3019974	+	asmbl_36124	none	STRG.28769.1	1	STRG.28769.2,blat.proc3829885.chain_1774,blat.proc3829885.chain_1780,blat.proc3829885.chain_1782	4
scaffold_5	alternate_exon	7319431	7319455	+	asmbl_44149,asmbl_44150	none	Trinity_GG_3345_c0_g1_i1,Trinity_GG_3345_c0_g1_i2,blat.proc3829873.chain_2275,blat.proc3829873.chain_2276	4	STRG.6121.1,STRG.6121.2,Trinity_GG_3345_c0_g2_i1,blat.proc3829873.chain_2277	4
scaffold_27	alternate_exon	9435083	9435140	-	asmbl_37091	none	STRG.29170.4,Trinity_GG_33337_c0_g1_i3,blat.proc3829901.chain_2274	3	STRG.29170.1,blat.proc3829901.chain_2276	2
scaffold_15	alternate_exon	15185471	15190068	+	asmbl_14692	none	STRG.18906.2	1	STRG.18906.4	1
scaffold_1	retained_exon	4567838	4567860	-	asmbl_206,asmbl_211	none	STRG.277.4,blat.proc3829887.chain_133,blat.proc3829887.chain_138	3	STRG.277.1,STRG.277.2,blat.proc3829887.chain_136	3
scaffold_25	alternate_exon	637688	638055	-	asmbl_33985	none	STRG.27095.1,blat.proc3829901.chain_337	2	STRG.27095.2,blat.proc3829901.chain_338	2
scaffold_8	spliced_intron	1801775	1801810	-	asmbl_52698	none	STRG.9770.1	1	blat.proc3829875.chain_2240	1
scaffold_17	ends_in_intron	7116683	7116683	-	asmbl_19084,asmbl_19085	none	Trinity_GG_28472_c0_g1_i1,Trinity_GG_28472_c0_g1_i2,blat.proc3829897.chain_1339,blat.proc3829897.chain_1340	4	STRG.20367.1,STRG.20367.2,Trinity_GG_28472_c0_g1_i3,Trinity_GG_28472_c0_g1_i4,blat.proc3829897.chain_1337,blat.proc3829897.chain_1338	6
scaffold_21	retained_intron	4944460	4944587	+	asmbl_28560	none	blat.proc3829883.chain_1126	1	STRG.24027.1,blat.proc3829883.chain_1124	2
scaffold_9	alternate_exon	4830598	4830647	-	asmbl_54938	none	STRG.11048.2	1	STRG.11048.1,blat.proc3829891.chain_3215	2
scaffold_24	starts_in_intron	3394475	3394475	+	asmbl_32158	none	Trinity_GG_14639_c0_g1_i2,blat.proc3829883.chain_3379	2	STRG.26517.1,STRG.26517.2,blat.proc3829883.chain_3380	3
scaffold_7	starts_in_intron	13952981	13952981	+	asmbl_51273	none	STRG.9478.2	1	STRG.9478.1,Trinity_GG_5270_c0_g1_i2,Trinity_GG_5270_c0_g1_i3,Trinity_GG_5270_c0_g1_i5,blat.proc3829875.chain_1946,blat.proc3829875.chain_1947,blat.proc3829875.chain_1949	7
scaffold_27	retained_exon	9989337	9989454	+	asmbl_36510	none	STRG.29212.1,Trinity_GG_16196_c0_g1_i1,blat.proc3829885.chain_2343	3	STRG.29212.2	1
scaffold_6	retained_intron	2758919	2758962	+	asmbl_46717	none	STRG.7264.6,Trinity_GG_3999_c0_g1_i2	2	STRG.7264.4	1
scaffold_3	ends_in_intron	14763533	14763533	-	asmbl_39362	none	STRG.3818.4,Trinity_GG_19114_c2_g1_i1,blat.proc3829887.chain_3605	3	STRG.3818.2,STRG.3818.3	2
scaffold_11	starts_in_intron	5486790	5486790	-	asmbl_6635	none	blat.proc3829893.chain_2052	1	STRG.13603.1,blat.proc3829893.chain_2051	2
scaffold_1	ends_in_intron	17675389	17675389	-	asmbl_1060	none	blat.proc3829887.chain_1131	1	STRG.1236.1,blat.proc3829887.chain_1132	2
scaffold_17	alternate_exon	7620815	7621014	+	asmbl_18042	none	STRG.20387.2	1	STRG.20387.1	1
scaffold_6	alt_donor	573670	573671	+	asmbl_46617	none	Trinity_GG_3890_c0_g1_i3,blat.proc3829873.chain_3208	2	STRG.7105.2,blat.proc3829873.chain_3210	2
scaffold_27	alt_acceptor	3019994	3019995	+	asmbl_36133,asmbl_36134,asmbl_36135	none	blat.proc3829885.chain_1774,blat.proc3829885.chain_1780,blat.proc3829885.chain_1782	3	STRG.28769.1,STRG.28769.2	2
scaffold_18	alternate_exon	4763173	4763351	+	asmbl_20590	none	Trinity_GG_11674_c0_g2_i2,blat.proc3829881.chain_2091	2	STRG.21260.1,STRG.21260.2,STRG.21260.3,STRG.21260.4,STRG.21260.5,Trinity_GG_11674_c0_g1_i1,blat.proc3829881.chain_2088	7
scaffold_15	retained_exon	15450277	15450340	+	asmbl_14738,asmbl_14744,asmbl_14746,asmbl_14747	none	STRG.18933.1,STRG.18933.2,Trinity_GG_10389_c0_g1_i6,Trinity_GG_10389_c0_g1_i7,blat.proc3829879.chain_3563,blat.proc3829879.chain_3564,blat.proc3829879.chain_3565	7	Trinity_GG_10389_c0_g1_i4,blat.proc3829879.chain_3566	2
scaffold_11	alt_donor	2500473	2500474	-	asmbl_6488	none	STRG.13391.1,blat.proc3829893.chain_1888	2	STRG.13391.2	1
scaffold_10	spliced_intron	13282361	13283064	-	asmbl_3773	none	STRG.12910.3	1	STRG.12910.1,Trinity_GG_24247_c4_g1_i1,Trinity_GG_24247_c5_g1_i1,blat.proc3829893.chain_1437,blat.proc3829893.chain_1440,blat.proc3829893.chain_1441	6
scaffold_17	alternate_exon	6906094	6906138	-	asmbl_19046	none	STRG.20341.2,blat.proc3829897.chain_1302	2	STRG.20341.1	1
scaffold_17	alternate_exon	7130840	7130895	-	asmbl_19091	none	STRG.20373.1,Trinity_GG_28474_c0_g1_i1,blat.proc3829897.chain_1347	3	STRG.20373.2	1
scaffold_16	alternate_exon	14614851	14615315	-	asmbl_16659,asmbl_16663	none	STRG.19837.1,Trinity_GG_28149_c0_g1_i1,Trinity_GG_28149_c0_g1_i3,blat.proc3829897.chain_800,blat.proc3829897.chain_801	5	STRG.19837.2,Trinity_GG_28149_c0_g1_i2,blat.proc3829897.chain_799	3
scaffold_17	alternate_exon	682848	683184	-	asmbl_18684	none	STRG.19908.3,blat.proc3829897.chain_873	2	STRG.19908.1,blat.proc3829897.chain_875,blat.proc3829897.chain_876	3
scaffold_7	retained_intron	8296441	8297094	-	asmbl_49806,asmbl_49809	none	STRG.9056.2,STRG.9056.3,Trinity_GG_22080_c0_g1_i2,blat.proc3829891.chain_1236,blat.proc3829891.chain_1238	5	STRG.9056.4,blat.proc3829891.chain_1237	2
scaffold_13	alt_donor	2950721	2950722	-	asmbl_9451	none	STRG.15578.1,blat.proc3829895.chain_348	2	STRG.15578.2	1
scaffold_5	alt_acceptor	15111547	15111548	-	asmbl_46026,asmbl_46027	none	STRG.6691.1,STRG.6691.2,Trinity_GG_20764_c0_g1_i1,Trinity_GG_20764_c0_g1_i3,blat.proc3829889.chain_2732,blat.proc3829889.chain_2733	6	STRG.6691.3	1
scaffold_20	alternate_exon	6976338	6976493	+	asmbl_25845	none	STRG.23248.3	1	STRG.23248.1,STRG.23248.2,blat.proc3829883.chain_382,blat.proc3829883.chain_383	4
scaffold_17	starts_in_intron	8221146	8221146	+	asmbl_18083,asmbl_18084	none	STRG.20435.3,STRG.20435.4	2	STRG.20435.1,STRG.20435.2,blat.proc3829881.chain_1196,blat.proc3829881.chain_1198,blat.proc3829881.chain_1199,blat.proc3829881.chain_1200,blat.proc3829881.chain_1203	7
scaffold_13	starts_in_intron	13235751	13235751	+	asmbl_11355	none	blat.proc3829879.chain_1161	1	STRG.16383.1,blat.proc3829879.chain_1162	2
scaffold_12	alt_donor	9931029	9931030	+	asmbl_8859	none	STRG.14950.2,blat.proc3829877.chain_3389	2	STRG.14950.1,blat.proc3829877.chain_3390	2
scaffold_11	alternate_exon	16252477	16253777	+	asmbl_6127	none	STRG.14318.3	1	STRG.14318.1,Trinity_GG_7848_c1_g1_i1,blat.proc3829877.chain_2720	3
scaffold_22	alt_donor	4411948	4411949	-	asmbl_30024	none	STRG.24848.1	1	STRG.24848.2,STRG.24848.3	2
scaffold_13	alt_acceptor	10778619	10778620	-	asmbl_10028	none	STRG.16256.2	1	STRG.16256.1,blat.proc3829895.chain_1017	2
scaffold_17	skipped_exon	6203941	6205818	-	asmbl_19019	none	Trinity_GG_28414_c0_g1_i2,blat.proc3829897.chain_1241	2	STRG.20281.1,Trinity_GG_28414_c0_g1_i1,blat.proc3829897.chain_1239,blat.proc3829897.chain_1240	4
scaffold_16	alt_donor	3829185	3829186	-	asmbl_16177	none	STRG.19178.2	1	STRG.19178.1	1
scaffold_1	retained_intron	18485288	18485991	-	asmbl_1112,asmbl_1113	none	STRG.1300.1,STRG.1300.3	2	blat.proc3829887.chain_1211	1
scaffold_3	alternate_exon	11522067	11522155	+	asmbl_40311	none	STRG.3580.2,blat.proc3829871.chain_3684	2	STRG.3580.1,blat.proc3829871.chain_3683	2
scaffold_3	alternate_exon	6188092	6189687	-	asmbl_38867	none	STRG.3262.4	1	STRG.3262.1,blat.proc3829887.chain_3015	2
scaffold_28	starts_in_intron	6558577	6558577	-	asmbl_37686,asmbl_37688	none	STRG.29733.2,blat.proc3829901.chain_2867	2	STRG.29733.1,STRG.29733.3,blat.proc3829901.chain_2868	3
scaffold_13	alt_acceptor	366417	366418	-	asmbl_9288	none	STRG.15426.5	1	STRG.15426.1,Trinity_GG_25666_c0_g1_i11,blat.proc3829895.chain_155	3
scaffold_5	spliced_intron	17210617	17210897	-	asmbl_46171,asmbl_46172,asmbl_46174	none	STRG.6885.1,blat.proc3829889.chain_2912,blat.proc3829889.chain_2913,blat.proc3829889.chain_2915	4	STRG.6885.2,blat.proc3829889.chain_2914	2
scaffold_4	spliced_intron	10588124	10588890	-	asmbl_41599	none	STRG.4796.1,Trinity_GG_19688_c0_g1_i2,blat.proc3829889.chain_866	3	Trinity_GG_19688_c0_g1_i1,blat.proc3829889.chain_867	2
scaffold_13	retained_intron	16138073	16138097	+	asmbl_11532	none	STRG.16640.3	1	STRG.16640.1	1
scaffold_24	retained_exon	33735	33864	-	asmbl_32680	none	Trinity_GG_31704_c0_g1_i1,blat.proc3829899.chain_3361	2	STRG.26300.6	1
scaffold_12	alt_acceptor	7275907	7275908	-	asmbl_7693,asmbl_7697	none	STRG.14787.1,STRG.14787.3,Trinity_GG_25259_c0_g1_i3,blat.proc3829893.chain_3176	4	STRG.14787.2,Trinity_GG_25259_c0_g1_i1,blat.proc3829893.chain_3177	3
scaffold_16	alt_acceptor	291513	291514	+	asmbl_16804	none	blat.proc3829879.chain_3638	1	STRG.19012.1,STRG.19012.2,STRG.19012.3,Trinity_GG_10430_c0_g1_i2,Trinity_GG_10430_c0_g1_i4,blat.proc3829879.chain_3639,blat.proc3829879.chain_3641,blat.proc3829879.chain_3642	8
scaffold_19	starts_in_intron	12107686	12107686	-	asmbl_21670	none	STRG.22526.2,blat.proc3829897.chain_3212	2	STRG.22526.1,STRG.22526.3,STRG.22526.4,blat.proc3829897.chain_3209,blat.proc3829897.chain_3211	5
scaffold_14	retained_intron	7506677	7507029	-	asmbl_13205,asmbl_13207	none	STRG.17180.3,blat.proc3829895.chain_1866	2	STRG.17180.1,STRG.17180.2,STRG.17180.4,blat.proc3829895.chain_1867,blat.proc3829895.chain_1868,blat.proc3829895.chain_1869,blat.proc3829895.chain_1870	7
scaffold_17	alt_acceptor	2566629	2566630	+	asmbl_17796	none	blat.proc3829881.chain_839	1	STRG.20039.1,STRG.20039.2,blat.proc3829881.chain_840	3
scaffold_23	ends_in_intron	2310320	2310320	+	asmbl_30689	none	blat.proc3829883.chain_2531	1	STRG.25687.1,blat.proc3829883.chain_2529,blat.proc3829883.chain_2532	3
scaffold_9	starts_in_intron	12183819	12183819	+	asmbl_54400	none	Trinity_GG_6429_c0_g1_i1,blat.proc3829877.chain_292	2	STRG.11532.1,blat.proc3829877.chain_293	2
scaffold_11	spliced_intron	1983288	1983379	-	asmbl_6438,asmbl_6439,asmbl_6440	none	STRG.13349.1,STRG.13349.2,blat.proc3829893.chain_1815,blat.proc3829893.chain_1816	4	blat.proc3829893.chain_1817	1
scaffold_18	retained_intron	4071656	4072114	-	asmbl_19825,asmbl_19826	none	STRG.21193.1,Trinity_GG_28890_c0_g1_i3,blat.proc3829897.chain_2094,blat.proc3829897.chain_2095	4	STRG.21193.2	1
scaffold_6	alt_donor	12554853	12554854	-	asmbl_48761,asmbl_48763	none	STRG.8010.1,blat.proc3829891.chain_318	2	STRG.8010.2,blat.proc3829891.chain_321	2
scaffold_4	retained_intron	19605273	19605368	-	asmbl_42223	none	STRG.5547.3	1	STRG.5547.4	1
scaffold_3	alt_acceptor	17117871	17117872	+	asmbl_40605,asmbl_40607,asmbl_40609,asmbl_40610	none	STRG.3957.2,STRG.3957.3,STRG.3957.4,STRG.3957.6,blat.proc3829873.chain_317	5	STRG.3957.7	1
scaffold_26	spliced_intron	5524354	5524425	+	asmbl_35542	none	STRG.28244.4	1	STRG.28244.1	1
scaffold_13	alt_donor	4602711	4602712	-	asmbl_9605	none	blat.proc3829895.chain_533	1	STRG.15781.2,blat.proc3829895.chain_531	2
scaffold_340	spliced_intron	809	1149	+	asmbl_40965,asmbl_40966	none	STRG.30267.3,STRG.30267.4	2	STRG.30267.2,Trinity_GG_16763_c0_g1_i8,Trinity_GG_24043_c0_g1_i3,blat.proc3829885.chain_3309,blat.proc3829893.chain_1073,blat.proc3829893.chain_1074	6
scaffold_6	ends_in_intron	12054227	12054227	-	asmbl_48721	none	Trinity_GG_21543_c0_g1_i3	1	STRG.7973.1,blat.proc3829891.chain_249	2
scaffold_10	ends_in_intron	12895561	12895561	-	asmbl_3745	none	blat.proc3829893.chain_1340	1	STRG.12877.1,blat.proc3829893.chain_1336,blat.proc3829893.chain_1337,blat.proc3829893.chain_1339	4
scaffold_7	spliced_intron	5928121	5928803	+	asmbl_50715	none	blat.proc3829875.chain_1202	1	STRG.8891.1,Trinity_GG_4833_c0_g1_i4,blat.proc3829875.chain_1204	3
scaffold_12	alt_acceptor	4345647	4345648	+	asmbl_8564	none	STRG.14606.1	1	STRG.14606.2,blat.proc3829877.chain_3131	2
scaffold_18	alt_acceptor	8726779	8726780	+	asmbl_20888	none	blat.proc3829881.chain_2484	1	STRG.21533.4	1
scaffold_26	alt_donor	10154171	10154172	+	asmbl_35824	none	STRG.28514.2,Trinity_GG_15781_c0_g1_i2,blat.proc3829885.chain_1553	3	STRG.28514.1,STRG.28514.3,Trinity_GG_15781_c0_g1_i1,blat.proc3829885.chain_1554,blat.proc3829885.chain_1555	5
scaffold_6	alternate_exon	3321578	3321662	+	asmbl_46774	none	STRG.7330.2,Trinity_GG_4014_c0_g1_i1,blat.proc3829873.chain_3437	3	STRG.7330.1,blat.proc3829873.chain_3436	2
scaffold_8	spliced_intron	5976013	5976120	-	asmbl_52847	none	STRG.9999.2	1	STRG.9999.1,blat.proc3829891.chain_2178	2
scaffold_11	spliced_intron	4744838	4745154	-	asmbl_6599	none	STRG.13555.1,blat.proc3829893.chain_2036	2	blat.proc3829893.chain_2037	1
scaffold_25	skipped_exon	5827048	5828229	-	asmbl_34266	none	STRG.27460.2	1	STRG.27460.1	1
scaffold_14	spliced_intron	8694420	8694707	-	asmbl_13318,asmbl_13319,asmbl_13320	none	STRG.17289.1,blat.proc3829895.chain_2016,blat.proc3829895.chain_2017,blat.proc3829895.chain_2018	4	STRG.17289.2,blat.proc3829895.chain_2019	2
scaffold_26	alt_acceptor	3268088	3268089	+	asmbl_35300	none	STRG.27995.2,blat.proc3829885.chain_957,blat.proc3829885.chain_958	3	STRG.27995.3	1
scaffold_21	alt_acceptor	6288443	6288444	-	asmbl_27746	none	STRG.24146.2	1	STRG.24146.1,blat.proc3829899.chain_1223	2
scaffold_4	alt_donor	5279476	5279477	-	asmbl_41325	none	STRG.4428.1,blat.proc3829889.chain_534	2	STRG.4428.2,blat.proc3829889.chain_535	2
scaffold_3	retained_intron	3262598	3263507	+	asmbl_39893,asmbl_39897	none	STRG.3087.6,Trinity_GG_1771_c0_g1_i11,Trinity_GG_1771_c0_g1_i19,blat.proc3829871.chain_3296,blat.proc3829871.chain_3301	5	STRG.3087.1	1
scaffold_23	retained_exon	10700992	10701050	+	asmbl_31160	none	STRG.26237.2	1	STRG.26237.1	1
scaffold_27	alternate_exon	6196959	6199246	+	asmbl_36337	none	STRG.28993.3,Trinity_GG_16045_c0_g1_i1,Trinity_GG_16045_c0_g1_i2,blat.proc3829885.chain_2121,blat.proc3829885.chain_2122	5	STRG.28993.2	1
scaffold_11	alt_acceptor	5125246	5125247	-	asmbl_6631	none	STRG.13592.1,blat.proc3829893.chain_2050	2	STRG.13592.2,blat.proc3829893.chain_2049	2
scaffold_2	spliced_intron	5375992	5376203	-	asmbl_23172	none	blat.proc3829887.chain_1847	1	STRG.1946.3,blat.proc3829887.chain_1846	2
scaffold_11	ends_in_intron	11643823	11643823	+	asmbl_5956	none	blat.proc3829877.chain_2596	1	STRG.14081.1,blat.proc3829877.chain_2595	2
scaffold_8	starts_in_intron	2660768	2660768	-	asmbl_52709	none	Trinity_GG_22465_c0_g1_i1	1	STRG.9792.1,blat.proc3829891.chain_1940	2
scaffold_13	ends_in_intron	11371990	11371990	+	asmbl_11253	none	blat.proc3829879.chain_951	1	STRG.16284.1,blat.proc3829879.chain_952	2
scaffold_25	starts_in_intron	9255665	9255665	+	asmbl_33786	none	blat.proc3829885.chain_755	1	STRG.27717.1,blat.proc3829885.chain_756	2
scaffold_25	alt_donor	7338595	7338596	+	asmbl_33663	none	STRG.27571.1,Trinity_GG_15205_c0_g1_i3,blat.proc3829885.chain_597	3	STRG.27571.2,STRG.27571.3,blat.proc3829885.chain_598	3
scaffold_21	retained_intron	7009393	7009561	-	asmbl_27801	none	blat.proc3829899.chain_1274	1	STRG.24222.1,STRG.24222.2,blat.proc3829899.chain_1273,blat.proc3829899.chain_1275	4
scaffold_21	retained_exon	8129600	8129635	-	asmbl_27911	none	blat.proc3829899.chain_1382	1	STRG.24334.5,blat.proc3829899.chain_1383,blat.proc3829899.chain_1385,blat.proc3829899.chain_1387	4
scaffold_14	retained_intron	1094343	1094586	+	asmbl_11776	none	STRG.16756.3,blat.proc3829879.chain_1478	2	STRG.16756.1,blat.proc3829879.chain_1479	2
scaffold_14	alternate_exon	14147748	14148583	+	asmbl_12513	none	STRG.17676.4	1	STRG.17676.1	1
scaffold_8	spliced_intron	13132405	13133093	-	asmbl_53273	none	blat.proc3829891.chain_2642	1	STRG.10481.2,blat.proc3829891.chain_2640,blat.proc3829891.chain_2641	3
scaffold_1	spliced_intron	8990419	8991134	-	asmbl_515	none	blat.proc3829887.chain_494	1	STRG.596.1,blat.proc3829887.chain_495	2
scaffold_10	retained_intron	3714042	3714121	+	asmbl_4340,asmbl_4341	none	STRG.12190.1,blat.proc3829877.chain_863,blat.proc3829877.chain_864	3	STRG.12190.2	1
scaffold_5	spliced_intron	12258749	12258866	-	asmbl_45823	none	STRG.6449.1,blat.proc3829889.chain_2506	2	STRG.6449.2,blat.proc3829889.chain_2505	2
scaffold_6	retained_exon	12551792	12551883	-	asmbl_48759,asmbl_48762	none	STRG.8010.2,blat.proc3829891.chain_322	2	STRG.8010.3,blat.proc3829891.chain_318	2
scaffold_9	alternate_exon	15249547	15249573	+	asmbl_54527	none	STRG.11707.1,Trinity_GG_6541_c0_g1_i2	2	STRG.11707.2,Trinity_GG_6541_c0_g1_i1,blat.proc3829877.chain_471	3
scaffold_26	spliced_intron	4679112	4679225	-	asmbl_34857	none	STRG.28174.1	1	STRG.28174.2	1
scaffold_21	ends_in_intron	6399240	6399240	+	asmbl_28654	none	blat.proc3829883.chain_1200	1	STRG.24152.1,blat.proc3829883.chain_1197,blat.proc3829883.chain_1199,blat.proc3829883.chain_1201	4
scaffold_14	skipped_exon	8451583	8452120	-	asmbl_13300	none	Trinity_GG_26716_c0_g1_i1	1	Trinity_GG_26716_c0_g1_i2	1
scaffold_15	alt_donor	12106676	12106677	+	asmbl_14479	none	blat.proc3829879.chain_3249	1	STRG.18659.1,STRG.18659.2	2
scaffold_24	alternate_exon	6445150	6445290	+	asmbl_32323	none	blat.proc3829883.chain_3603	1	STRG.26679.1,STRG.26679.2,STRG.26679.3,blat.proc3829883.chain_3599,blat.proc3829883.chain_3600,blat.proc3829883.chain_3601,blat.proc3829883.chain_3602	7
scaffold_1150	retained_exon	2277	2370	+	asmbl_7386	none	STRG.30530.2	1	STRG.30530.1,blat.proc3829885.chain_3482	2
scaffold_7	spliced_intron	3957526	3957766	-	asmbl_49654,asmbl_49655	none	STRG.8779.2,STRG.8779.3	2	Trinity_GG_21990_c1_g1_i1,blat.proc3829891.chain_1078	2
scaffold_16	spliced_intron	1510638	1511404	+	asmbl_16872	none	STRG.19088.3	1	STRG.19088.1,blat.proc3829879.chain_3698	2
scaffold_8	ends_in_intron	8179049	8179049	+	asmbl_51994	none	blat.proc3829875.chain_2573	1	STRG.10093.1,STRG.10093.2,STRG.10093.3,STRG.10093.4,blat.proc3829875.chain_2574,blat.proc3829875.chain_2575	6
scaffold_6	ends_in_intron	1750690	1750690	-	asmbl_48061,asmbl_48063,asmbl_48064	none	STRG.7224.7,STRG.7224.8,blat.proc3829889.chain_3172,blat.proc3829889.chain_3175	4	STRG.7224.1,STRG.7224.3,STRG.7224.4,STRG.7224.5,STRG.7224.6,blat.proc3829889.chain_3170,blat.proc3829889.chain_3171,blat.proc3829889.chain_3174	8
scaffold_17	retained_intron	11034956	11035084	-	asmbl_19313	none	blat.proc3829897.chain_1608	1	STRG.20653.1,STRG.20653.2,STRG.20653.3,STRG.20653.4,blat.proc3829897.chain_1607	5
scaffold_26	retained_intron	5501908	5502171	+	asmbl_35535	none	STRG.28242.1,blat.proc3829885.chain_1252	2	STRG.28242.2,blat.proc3829885.chain_1251	2
scaffold_1	starts_in_intron	11596707	11596707	-	asmbl_650	none	blat.proc3829887.chain_648	1	STRG.764.1,blat.proc3829887.chain_647	2
scaffold_8	alternate_exon	16081645	16081822	-	asmbl_53365	none	STRG.10584.2	1	STRG.10584.1,STRG.10584.3,blat.proc3829891.chain_2680,blat.proc3829891.chain_2681	4
scaffold_10	spliced_intron	5390028	5390782	+	asmbl_4444	none	STRG.12356.1,blat.proc3829877.chain_992	2	Trinity_GG_6848_c0_g1_i3,blat.proc3829877.chain_993	2
scaffold_18	ends_in_intron	7860665	7860665	+	asmbl_20821	none	blat.proc3829881.chain_2465	1	STRG.21475.1,blat.proc3829881.chain_2466	2
scaffold_39	ends_in_intron	32575	32575	-	asmbl_41025	none	STRG.30019.3	1	STRG.30019.1,STRG.30019.2	2
scaffold_13	starts_in_intron	8836725	8836725	+	asmbl_11135	none	Trinity_GG_8875_c0_g1_i2,blat.proc3829879.chain_886	2	STRG.16145.1,blat.proc3829879.chain_887	2
scaffold_11	skipped_exon	7403201	7404365	+	asmbl_5635	none	Trinity_GG_7558_c0_g1_i2,blat.proc3829877.chain_2208	2	STRG.13741.1,Trinity_GG_7558_c0_g1_i1,blat.proc3829877.chain_2207	3
scaffold_16	starts_in_intron	303700	303700	-	asmbl_16017	none	blat.proc3829897.chain_48	1	STRG.19009.1,STRG.19009.2	2
scaffold_9	alt_donor	5279521	5279522	+	asmbl_53993	none	STRG.11095.3	1	STRG.11095.1,blat.proc3829875.chain_3589	2
scaffold_3	retained_intron	19882464	19882567	-	asmbl_39620	none	blat.proc3829889.chain_138	1	STRG.4100.3	1
scaffold_17	alternate_exon	11340008	11340107	-	asmbl_19325	none	STRG.20676.2	1	STRG.20676.1,blat.proc3829897.chain_1581,blat.proc3829897.chain_1583	3
scaffold_12	alt_acceptor	3693562	3693563	+	asmbl_8527	none	STRG.14563.1,Trinity_GG_8045_c0_g1_i2,blat.proc3829877.chain_3055	3	STRG.14563.2	1
scaffold_14	retained_exon	7460506	7460602	-	asmbl_13194	none	STRG.17173.4	1	blat.proc3829895.chain_1853	1
scaffold_7	spliced_intron	15595021	15595253	+	asmbl_51330	none	STRG.9548.3	1	STRG.9548.1,blat.proc3829875.chain_2000	2
scaffold_19	retained_intron	8753871	8754300	+	asmbl_22354	none	blat.proc3829881.chain_3259	1	STRG.22316.1,blat.proc3829881.chain_3257,blat.proc3829881.chain_3258	3
scaffold_6	alt_acceptor	19111170	19111171	+	asmbl_47822	none	STRG.8567.3	1	STRG.8567.1,STRG.8567.2,Trinity_GG_4689_c0_g1_i1,Trinity_GG_4689_c0_g1_i2,blat.proc3829875.chain_940,blat.proc3829875.chain_941	6
scaffold_12	alt_donor	15263554	15263555	-	asmbl_8197,asmbl_8203	none	STRG.15320.1,Trinity_GG_25603_c0_g1_i3,blat.proc3829895.chain_52,blat.proc3829895.chain_53	4	STRG.15320.2,STRG.15320.3,STRG.15320.4,Trinity_GG_25603_c0_g1_i1,blat.proc3829895.chain_54	5
scaffold_16	alt_donor	125457	125458	+	asmbl_16788	none	Trinity_GG_10419_c0_g1_i5,blat.proc3829879.chain_3617	2	Trinity_GG_10419_c0_g1_i3,blat.proc3829879.chain_3620	2
scaffold_20	starts_in_intron	11480895	11480895	+	asmbl_26206	none	STRG.23639.5,Trinity_GG_13053_c0_g2_i1,blat.proc3829883.chain_718	3	STRG.23639.1,Trinity_GG_13053_c0_g1_i2,Trinity_GG_13053_c0_g1_i4,blat.proc3829883.chain_714,blat.proc3829883.chain_717	5
scaffold_4	skipped_exon	10949549	10950569	+	asmbl_43019	none	STRG.4816.1,blat.proc3829873.chain_1178	2	STRG.4816.2	1
scaffold_16	starts_in_intron	7228085	7228085	-	asmbl_16356	none	STRG.19382.2	1	STRG.19382.1,STRG.19382.3	2
scaffold_26	starts_in_intron	4329357	4329357	-	asmbl_34824	none	blat.proc3829901.chain_1308	1	STRG.28149.1,STRG.28149.2,STRG.28149.3,STRG.28149.4	4
scaffold_4	alt_donor	6602024	6602025	+	asmbl_42746	none	blat.proc3829873.chain_858	1	STRG.4520.1,STRG.4520.2,blat.proc3829873.chain_857,blat.proc3829873.chain_860	4
scaffold_17	alt_donor	14394391	14394392	+	asmbl_18520,asmbl_18521	none	STRG.20909.1,STRG.20909.3,blat.proc3829881.chain_1741,blat.proc3829881.chain_1742	4	STRG.20909.2,blat.proc3829881.chain_1744	2
scaffold_16	starts_in_intron	7221841	7221841	-	asmbl_16348	none	blat.proc3829897.chain_421	1	STRG.19382.1,STRG.19382.2,STRG.19382.3,STRG.19382.4,STRG.19382.5,STRG.19382.6,STRG.19382.7	7
scaffold_6	alternate_exon	16607493	16607857	+	asmbl_47647	none	STRG.8378.1	1	STRG.8378.2,blat.proc3829875.chain_759	2
scaffold_3	spliced_intron	6200887	6200973	-	asmbl_38871	none	STRG.3259.1	1	STRG.3259.2,STRG.3259.3,Trinity_GG_18786_c0_g1_i1,blat.proc3829887.chain_3001	4
scaffold_26	starts_in_intron	5980626	5980626	+	asmbl_35588,asmbl_35591	none	Trinity_GG_15650_c0_g1_i4,blat.proc3829885.chain_1324,blat.proc3829885.chain_1325	3	STRG.28298.1,blat.proc3829885.chain_1321,blat.proc3829885.chain_1323	3
scaffold_20	alt_acceptor	2064116	2064117	+	asmbl_25619	none	STRG.22927.1	1	STRG.22927.2	1
scaffold_11	skipped_exon	13092586	13094447	+	asmbl_6000,asmbl_6001,asmbl_6006,asmbl_6007	none	STRG.14176.1,STRG.14176.3,blat.proc3829877.chain_2671,blat.proc3829877.chain_2672,blat.proc3829877.chain_2674,blat.proc3829877.chain_2678	6	STRG.14176.4,blat.proc3829877.chain_2669,blat.proc3829877.chain_2675	3
scaffold_8	spliced_intron	11278090	11278313	-	asmbl_53142,asmbl_53143,asmbl_53144,asmbl_53145	none	STRG.10339.1,STRG.10339.3,STRG.10339.4,blat.proc3829891.chain_2438,blat.proc3829891.chain_2439,blat.proc3829891.chain_2440	6	STRG.10339.2,Trinity_GG_22740_c0_g1_i4,blat.proc3829891.chain_2437	3
scaffold_12	alt_acceptor	9646726	9646727	-	asmbl_7813	none	STRG.14926.2	1	STRG.14926.1,blat.proc3829893.chain_3326	2
scaffold_2	retained_intron	7782690	7783100	+	asmbl_24605	none	STRG.2076.1,Trinity_GG_1189_c0_g1_i13,blat.proc3829871.chain_2203,blat.proc3829871.chain_2210	4	STRG.2076.2,STRG.2076.5,STRG.2076.6,blat.proc3829871.chain_2205,blat.proc3829871.chain_2208,blat.proc3829871.chain_2211	6
scaffold_27	alt_acceptor	4240047	4240048	+	asmbl_36224	none	STRG.28861.1,blat.proc3829885.chain_1932	2	STRG.28861.2	1
scaffold_23	spliced_intron	7281701	7281793	-	asmbl_31742	none	STRG.26034.3	1	STRG.26034.1,blat.proc3829899.chain_3127	2
scaffold_13	skipped_exon	8909268	8912067	+	asmbl_11141	none	STRG.16150.1,blat.proc3829879.chain_825	2	STRG.16150.2,Trinity_GG_8845_c0_g1_i3,blat.proc3829879.chain_826	3
scaffold_7	skipped_exon	18392948	18394633	-	asmbl_50292,asmbl_50299	none	STRG.9659.2,STRG.9659.4,blat.proc3829891.chain_1871	3	STRG.9659.1,STRG.9659.3,STRG.9659.5,Trinity_GG_22427_c0_g1_i10,Trinity_GG_22427_c0_g1_i11,blat.proc3829891.chain_1868,blat.proc3829891.chain_1869,blat.proc3829891.chain_1870,blat.proc3829891.chain_1875	9
scaffold_2	ends_in_intron	2881502	2881502	-	asmbl_22957	none	Trinity_GG_17913_c5_g1_i1,blat.proc3829887.chain_1504	2	STRG.1733.2,blat.proc3829887.chain_1492,blat.proc3829887.chain_1496,blat.proc3829887.chain_1500	4
scaffold_7	alternate_exon	11151411	11152604	+	asmbl_51038	none	STRG.9249.2	1	STRG.9249.1,Trinity_GG_5128_c0_g1_i1,blat.proc3829875.chain_1688	3
scaffold_19	starts_in_intron	2874390	2874390	+	asmbl_22088	none	Trinity_GG_12150_c0_g1_i2,blat.proc3829881.chain_2923	2	STRG.21965.1,blat.proc3829881.chain_2924	2
scaffold_3	retained_intron	19884864	19885401	-	asmbl_39617,asmbl_39618	none	Trinity_GG_19264_c1_g1_i6,blat.proc3829889.chain_139,blat.proc3829889.chain_144	3	STRG.4100.2,STRG.4100.4,Trinity_GG_19264_c1_g1_i4,blat.proc3829889.chain_142	4
scaffold_14	retained_intron	9272764	9273523	-	asmbl_13347,asmbl_13349	none	blat.proc3829895.chain_1994,blat.proc3829895.chain_1998	2	STRG.17323.1,STRG.17323.2,blat.proc3829895.chain_1995,blat.proc3829895.chain_1996,blat.proc3829895.chain_1997	5
scaffold_15	alt_acceptor	13659427	13659428	+	asmbl_14592	none	STRG.18785.1,blat.proc3829879.chain_3368	2	STRG.18785.2	1
scaffold_21	retained_intron	705967	706986	-	asmbl_27378	none	STRG.23751.2,Trinity_GG_30242_c0_g2_i1,blat.proc3829899.chain_814,blat.proc3829899.chain_818	4	Trinity_GG_30242_c0_g1_i8,blat.proc3829899.chain_813	2
scaffold_4	ends_in_intron	7039406	7039406	+	asmbl_42783,asmbl_42784	none	STRG.4538.2,blat.proc3829873.chain_918	2	STRG.4538.1,STRG.4538.3,blat.proc3829873.chain_919,blat.proc3829873.chain_920	4
scaffold_2	alt_acceptor	6349292	6349293	-	asmbl_23223	none	STRG.2000.2	1	STRG.2000.1,Trinity_GG_18078_c0_g1_i1,Trinity_GG_18078_c0_g1_i4,blat.proc3829887.chain_1763,blat.proc3829887.chain_1764	5
scaffold_12	spliced_intron	14256759	14257074	+	asmbl_9043	none	STRG.15246.3	1	STRG.15246.2,blat.proc3829877.chain_3699	2
scaffold_26	spliced_intron	5045661	5045778	+	asmbl_35463,asmbl_35464,asmbl_35470,asmbl_35476,asmbl_35478,asmbl_35481	none	STRG.28206.1,blat.proc3829885.chain_1159,blat.proc3829885.chain_1167,blat.proc3829885.chain_1168,blat.proc3829885.chain_1169,blat.proc3829885.chain_1170	6	blat.proc3829885.chain_1156	1
scaffold_7	skipped_exon	4047076	4047398	-	asmbl_49663	none	STRG.8793.1	1	STRG.8793.3,blat.proc3829891.chain_1137	2
scaffold_4	alt_donor	13412113	13412114	-	asmbl_41741	none	STRG.4970.2	1	STRG.4970.1,blat.proc3829889.chain_986	2
scaffold_15	starts_in_intron	1963859	1963859	+	asmbl_13985	none	blat.proc3829879.chain_2657	1	STRG.17971.1,STRG.17971.2,STRG.17971.3,blat.proc3829879.chain_2658,blat.proc3829879.chain_2659	5
scaffold_13	alt_donor	520305	520306	+	asmbl_10453,asmbl_10459,asmbl_10460	none	STRG.15434.5,Trinity_GG_8491_c0_g1_i2,blat.proc3829879.chain_111,blat.proc3829879.chain_113	4	STRG.15434.1,STRG.15434.2,STRG.15434.3,STRG.15434.4,Trinity_GG_8491_c0_g1_i1,blat.proc3829879.chain_110,blat.proc3829879.chain_114,blat.proc3829879.chain_115,blat.proc3829879.chain_116	9
scaffold_5	alt_donor	13317001	13317002	-	asmbl_45917,asmbl_45918,asmbl_45919	none	blat.proc3829889.chain_2545,blat.proc3829889.chain_2546,blat.proc3829889.chain_2547	3	STRG.6578.1,STRG.6578.2	2
scaffold_3	starts_in_intron	10275108	10275108	+	asmbl_40208	none	blat.proc3829871.chain_3623	1	STRG.3461.2,blat.proc3829871.chain_3625	2
scaffold_8	starts_in_intron	5856782	5856782	+	asmbl_51900	none	Trinity_GG_5569_c1_g1_i1,blat.proc3829875.chain_2503	2	STRG.9989.1,STRG.9989.2,STRG.9989.3,STRG.9989.4,Trinity_GG_5569_c0_g1_i1,Trinity_GG_5569_c0_g1_i2,Trinity_GG_5569_c0_g1_i3,Trinity_GG_5569_c0_g1_i4,blat.proc3829875.chain_2499,blat.proc3829875.chain_2500,blat.proc3829875.chain_2501,blat.proc3829875.chain_2502	12
scaffold_22	alt_acceptor	498163	498164	+	asmbl_29153	none	STRG.24682.1,blat.proc3829883.chain_1656	2	STRG.24682.3	1
scaffold_17	alternate_exon	545027	546022	+	asmbl_17679	none	STRG.19891.3	1	STRG.19891.2	1
scaffold_20	retained_intron	1614927	1615776	-	asmbl_26518,asmbl_26519,asmbl_26520	none	STRG.22881.1,STRG.22881.2,STRG.22881.3,Trinity_GG_29752_c0_g1_i1,Trinity_GG_29752_c2_g1_i1,blat.proc3829897.chain_3611,blat.proc3829897.chain_3613	7	STRG.22881.4	1
scaffold_17	alt_acceptor	14633464	14633465	+	asmbl_18537	none	blat.proc3829881.chain_1774	1	STRG.20934.1,STRG.20934.3	2
scaffold_3	alt_acceptor	14775077	14775078	-	asmbl_39369	none	STRG.3820.2,blat.proc3829887.chain_3623	2	STRG.3820.3	1
scaffold_4	spliced_intron	17805603	17806025	+	asmbl_43417	none	blat.proc3829873.chain_1627	1	blat.proc3829873.chain_1626	1
scaffold_18	skipped_exon	13267632	13268828	+	asmbl_21026	none	STRG.21757.2,blat.proc3829881.chain_2733	2	STRG.21757.1,blat.proc3829881.chain_2731	2
scaffold_21	spliced_intron	2947813	2947912	-	asmbl_27522	none	STRG.23903.3	1	STRG.23903.2,Trinity_GG_30331_c0_g1_i1,blat.proc3829899.chain_970	3
scaffold_11	retained_exon	17086459	17086527	-	asmbl_7225	none	STRG.14362.4,blat.proc3829893.chain_2767	2	STRG.14362.2,blat.proc3829893.chain_2768,blat.proc3829893.chain_2771	3
scaffold_9	alt_acceptor	17852000	17852001	+	asmbl_54632	none	STRG.11860.2	1	Trinity_GG_6607_c0_g1_i9,blat.proc3829877.chain_588	2
scaffold_18	spliced_intron	9258671	9259387	-	asmbl_20093	none	STRG.21559.1,Trinity_GG_29070_c0_g1_i5,blat.proc3829897.chain_2410	3	STRG.21559.2,STRG.21559.3,Trinity_GG_29070_c0_g1_i2,blat.proc3829897.chain_2411	4
scaffold_13	spliced_intron	7109506	7110796	+	asmbl_10998	none	STRG.15994.3,blat.proc3829879.chain_729	2	STRG.15994.1,Trinity_GG_8796_c0_g1_i5,Trinity_GG_8796_c0_g1_i9,blat.proc3829879.chain_723	4
scaffold_21	alt_donor	7461614	7461615	-	asmbl_27839	none	STRG.24260.2,blat.proc3829899.chain_1334	2	STRG.24260.1	1
scaffold_8	spliced_intron	12193942	12194153	-	asmbl_53185	none	STRG.10397.1,blat.proc3829891.chain_2520	2	blat.proc3829891.chain_2519	1
scaffold_2	alternate_exon	6081245	6085290	-	asmbl_23201	none	STRG.1980.1,Trinity_GG_18112_c0_g1_i4,blat.proc3829887.chain_1839,blat.proc3829887.chain_1841	4	STRG.1980.3,Trinity_GG_18112_c0_g1_i5,blat.proc3829887.chain_1840	3
scaffold_5	alternate_exon	8764550	8764709	-	asmbl_45618	none	STRG.6204.1,Trinity_GG_20507_c0_g1_i4,blat.proc3829889.chain_2288	3	STRG.6204.2,Trinity_GG_20507_c0_g1_i1,Trinity_GG_20507_c0_g1_i3,blat.proc3829889.chain_2287,blat.proc3829889.chain_2290	5
scaffold_6	starts_in_intron	10184354	10184354	-	asmbl_48606	none	blat.proc3829891.chain_117	1	STRG.7851.1,STRG.7851.2,blat.proc3829891.chain_118	3
scaffold_19	ends_in_intron	1116981	1116981	-	asmbl_21232	none	Trinity_GG_29212_c0_g1_i2,blat.proc3829897.chain_2642	2	STRG.21887.1,STRG.21887.4	2
scaffold_16	retained_intron	3706689	3706988	+	asmbl_16940	none	blat.proc3829881.chain_33	1	STRG.19166.1,blat.proc3829881.chain_34,blat.proc3829881.chain_35,blat.proc3829881.chain_36	4
scaffold_27	alt_acceptor	9099778	9099779	+	asmbl_36460	none	blat.proc3829885.chain_2320	1	blat.proc3829885.chain_2318,blat.proc3829885.chain_2319	2
scaffold_7	spliced_intron	12414914	12415002	-	asmbl_50025,asmbl_50027,asmbl_50028	none	STRG.9334.1,blat.proc3829891.chain_1562,blat.proc3829891.chain_1565,blat.proc3829891.chain_1566	4	blat.proc3829891.chain_1563	1
scaffold_32	alt_donor	37547	37548	+	asmbl_40900	none	blat.proc3829875.chain_987	1	STRG.29997.2	1
scaffold_5	alt_donor	19275251	19275252	+	asmbl_44966	none	STRG.7020.4	1	STRG.7020.2,Trinity_GG_3869_c0_g1_i2,blat.proc3829873.chain_3181	3
scaffold_16	retained_intron	14575800	14575872	-	asmbl_16652	none	STRG.19832.2,blat.proc3829897.chain_778	2	STRG.19832.1	1
scaffold_8	alternate_exon	16505854	16506770	-	asmbl_53419	none	blat.proc3829891.chain_2867	1	STRG.10621.5,blat.proc3829891.chain_2860,blat.proc3829891.chain_2864,blat.proc3829891.chain_2869	4
scaffold_18	alt_donor	6906420	6906421	+	asmbl_20722	none	STRG.21386.1,Trinity_GG_11811_c0_g1_i2,blat.proc3829881.chain_2354	3	STRG.21386.2	1
scaffold_12	retained_intron	9972719	9972921	-	asmbl_7834	none	Trinity_GG_25333_c0_g1_i4,blat.proc3829893.chain_3315	2	STRG.14954.2,Trinity_GG_25333_c0_g1_i6,blat.proc3829893.chain_3317	3
scaffold_4	alternate_exon	12834165	12834202	+	asmbl_43095	none	STRG.4926.2,Trinity_GG_2743_c0_g1_i1,blat.proc3829873.chain_1253	3	STRG.4926.1,blat.proc3829873.chain_1254	2
scaffold_723	retained_exon	2439	2508	-	asmbl_51575	none	blat.proc3829901.chain_3464	1	STRG.30418.2,blat.proc3829901.chain_3461	2
scaffold_14	alt_acceptor	2758048	2758049	-	asmbl_12955	none	STRG.16861.2	1	STRG.16861.1,Trinity_GG_26451_c0_g1_i2,blat.proc3829895.chain_1553	3
scaffold_24	ends_in_intron	8737969	8737969	-	asmbl_33086	none	Trinity_GG_32041_c1_g1_i1,blat.proc3829901.chain_174	2	STRG.26873.1,blat.proc3829901.chain_170,blat.proc3829901.chain_171,blat.proc3829901.chain_172	4
scaffold_12	starts_in_intron	10591243	10591243	+	asmbl_8909	none	Trinity_GG_8303_c0_g1_i2,blat.proc3829877.chain_3536	2	STRG.15019.1,Trinity_GG_8303_c0_g1_i1,blat.proc3829877.chain_3537	3
scaffold_9	ends_in_intron	15415054	15415054	-	asmbl_55493	none	blat.proc3829893.chain_107	1	STRG.11732.1,blat.proc3829893.chain_105,blat.proc3829893.chain_106	3
scaffold_5	alt_acceptor	13945925	13945926	-	asmbl_45963	none	STRG.6596.1	1	STRG.6596.2	1
scaffold_24	alt_donor	10479702	10479703	+	asmbl_32567	none	blat.proc3829885.chain_114	1	STRG.26999.1,STRG.26999.2,STRG.26999.3,blat.proc3829885.chain_115,blat.proc3829885.chain_116	5
scaffold_8	alt_acceptor	15163954	15163955	-	asmbl_53332	none	blat.proc3829891.chain_2702	1	STRG.10539.1,blat.proc3829891.chain_2701	2
scaffold_6	starts_in_intron	11116432	11116432	-	asmbl_48675	none	STRG.7918.3	1	STRG.7918.1	1
scaffold_21	starts_in_intron	2496953	2496953	+	asmbl_28417	none	STRG.23864.2,Trinity_GG_13219_c0_g1_i4,blat.proc3829883.chain_1009	3	STRG.23864.1,Trinity_GG_13219_c0_g1_i2,Trinity_GG_13219_c0_g1_i3,blat.proc3829883.chain_1006,blat.proc3829883.chain_1007,blat.proc3829883.chain_1008	6
scaffold_13	alt_acceptor	16460477	16460478	-	asmbl_10273,asmbl_10274,asmbl_10276	none	STRG.16689.1,STRG.16689.3,STRG.16689.4,Trinity_GG_26334_c0_g1_i2,Trinity_GG_26334_c0_g1_i3,blat.proc3829895.chain_1353,blat.proc3829895.chain_1355,blat.proc3829895.chain_1357	8	STRG.16689.5	1
scaffold_4	alt_acceptor	15295998	15295999	+	asmbl_43277	none	blat.proc3829873.chain_1411	1	STRG.5126.1,blat.proc3829873.chain_1410,blat.proc3829873.chain_1412	3
scaffold_11	skipped_exon	7924464	7925337	+	asmbl_5665	none	STRG.13793.1,Trinity_GG_7594_c0_g1_i3,blat.proc3829877.chain_2265	3	STRG.13793.3,Trinity_GG_7594_c0_g1_i4,blat.proc3829877.chain_2266	3
scaffold_5	alt_acceptor	6290159	6290160	+	asmbl_44079	none	Trinity_GG_3287_c0_g1_i1,blat.proc3829873.chain_2167	2	STRG.6032.1,STRG.6032.2	2
scaffold_23	retained_intron	4899316	4899400	+	asmbl_30836	none	STRG.25862.3	1	STRG.25862.1,Trinity_GG_14276_c0_g1_i1,blat.proc3829883.chain_2748	3
scaffold_18	ends_in_intron	4467262	4467262	+	asmbl_20552	none	blat.proc3829881.chain_2122	1	STRG.21230.1,STRG.21230.2,blat.proc3829881.chain_2121,blat.proc3829881.chain_2123	4
scaffold_6	skipped_exon	16887339	16888617	-	asmbl_49109	none	STRG.8402.1,Trinity_GG_21814_c0_g1_i3,blat.proc3829891.chain_737	3	STRG.8402.2,Trinity_GG_21814_c0_g1_i5,blat.proc3829891.chain_738	3
scaffold_12	alt_acceptor	4951562	4951563	-	asmbl_7598,asmbl_7600	none	STRG.14653.1,blat.proc3829893.chain_3045,blat.proc3829893.chain_3046	3	STRG.14653.2,blat.proc3829893.chain_3044	2
scaffold_19	alt_acceptor	614551	614552	+	asmbl_21993	none	STRG.21830.1,Trinity_GG_12086_c0_g1_i1,blat.proc3829881.chain_2811	3	STRG.21830.2	1
scaffold_27	starts_in_intron	6706943	6706943	+	asmbl_36359,asmbl_36360	none	STRG.29026.3,STRG.29026.4	2	STRG.29026.1,STRG.29026.2	2
scaffold_22	alt_donor	6130439	6130440	+	asmbl_29389,asmbl_29391	none	STRG.24955.3,blat.proc3829883.chain_2009	2	blat.proc3829883.chain_2010	1
scaffold_5	skipped_exon	15506286	15508000	-	asmbl_46063,asmbl_46064	none	STRG.6731.1,STRG.6731.2,blat.proc3829889.chain_2803	3	STRG.6731.3,blat.proc3829889.chain_2802,blat.proc3829889.chain_2804	3
scaffold_3	spliced_intron	9516758	9517928	+	asmbl_40185	none	STRG.3434.1,Trinity_GG_1959_c0_g1_i1,blat.proc3829871.chain_3641	3	STRG.3434.2,Trinity_GG_1959_c0_g1_i3,blat.proc3829871.chain_3637,blat.proc3829871.chain_3639	4
scaffold_27	alt_acceptor	3425706	3425707	+	asmbl_36164	none	STRG.28808.2	1	STRG.28808.1	1
scaffold_6	retained_intron	13710244	13710366	-	asmbl_48875	none	blat.proc3829891.chain_425	1	STRG.8114.1,STRG.8114.2,blat.proc3829891.chain_426	3
scaffold_4	ends_in_intron	17019740	17019740	-	asmbl_41996	none	Trinity_GG_19976_c0_g2_i1	1	STRG.5297.1,blat.proc3829889.chain_1372	2
scaffold_6	starts_in_intron	16468389	16468389	+	asmbl_47638	none	Trinity_GG_4589_c0_g1_i2,blat.proc3829875.chain_745	2	STRG.8367.2,blat.proc3829875.chain_743	2
scaffold_4	ends_in_intron	19506410	19506410	-	asmbl_42195	none	blat.proc3829889.chain_1558	1	blat.proc3829889.chain_1559	1
scaffold_10	retained_intron	9041499	9041894	+	asmbl_4635,asmbl_4636	none	Trinity_GG_6976_c0_g1_i1,Trinity_GG_6976_c0_g1_i2,blat.proc3829877.chain_1218,blat.proc3829877.chain_1220	4	STRG.12644.1,blat.proc3829877.chain_1219	2
scaffold_7	ends_in_intron	13867349	13867349	-	asmbl_50138	none	Trinity_GG_22309_c2_g1_i1,blat.proc3829891.chain_1680	2	STRG.9469.1	1
scaffold_17	retained_exon	9532392	9532451	+	asmbl_18229,asmbl_18230,asmbl_18232	none	STRG.20566.1,STRG.20566.2,Trinity_GG_11250_c0_g1_i4,Trinity_GG_11250_c0_g1_i7,blat.proc3829881.chain_1350,blat.proc3829881.chain_1352	6	STRG.20566.3,Trinity_GG_11250_c0_g1_i3,blat.proc3829881.chain_1351	3
scaffold_11	skipped_exon	3496620	3497228	+	asmbl_5398	none	blat.proc3829877.chain_1902	1	STRG.13472.2,STRG.13472.3	2
scaffold_4	alt_acceptor	4420319	4420320	+	asmbl_42594,asmbl_42595	none	STRG.4339.1,STRG.4339.2,Trinity_GG_2416_c0_g1_i2,Trinity_GG_2416_c0_g1_i3,blat.proc3829873.chain_726,blat.proc3829873.chain_727	6	STRG.4339.3	1
scaffold_19	alt_acceptor	7501378	7501379	+	asmbl_22265	none	STRG.22217.2	1	STRG.22217.1,blat.proc3829881.chain_3142	2
scaffold_19	alt_donor	12575420	12575421	-	asmbl_21729,asmbl_21732	none	STRG.22574.2,STRG.22574.3,blat.proc3829897.chain_3225	3	STRG.22574.1	1
scaffold_21	alt_acceptor	1156242	1156243	+	asmbl_28353	none	STRG.23777.1,Trinity_GG_13184_c0_g1_i1,blat.proc3829883.chain_945	3	STRG.23777.2,Trinity_GG_13184_c0_g1_i2,blat.proc3829883.chain_944	3
scaffold_27	retained_intron	6258368	6258607	+	asmbl_36348	none	STRG.28995.1,blat.proc3829885.chain_2098	2	STRG.28995.2,blat.proc3829885.chain_2097	2
scaffold_3	alternate_exon	16347399	16351003	-	asmbl_39448	none	STRG.3908.1,blat.proc3829887.chain_3747	2	STRG.3908.2,Trinity_GG_19193_c2_g1_i1,blat.proc3829889.chain_1,blat.proc3829889.chain_2	4
scaffold_1	spliced_intron	4010865	4010976	-	asmbl_177	none	STRG.240.2	1	STRG.240.1,blat.proc3829887.chain_65	2
scaffold_19	alternate_exon	12134403	12134501	+	asmbl_22562	none	STRG.22531.1,Trinity_GG_12454_c1_g1_i6,blat.proc3829881.chain_3460	3	STRG.22531.2,Trinity_GG_12454_c1_g1_i7,blat.proc3829881.chain_3458	3
scaffold_22	retained_intron	484303	485440	+	asmbl_29151	none	blat.proc3829883.chain_1727	1	STRG.24679.3,Trinity_GG_13642_c0_g1_i3,blat.proc3829883.chain_1726	3
scaffold_17	skipped_exon	9529492	9531393	+	asmbl_18229,asmbl_18232,asmbl_18233,asmbl_18235,asmbl_18236	none	STRG.20566.2,Trinity_GG_11250_c0_g1_i3,Trinity_GG_11250_c0_g1_i4,Trinity_GG_11250_c0_g1_i7,blat.proc3829881.chain_1349,blat.proc3829881.chain_1350,blat.proc3829881.chain_1351,blat.proc3829881.chain_1352,blat.proc3829881.chain_1353	9	STRG.20566.1,Trinity_GG_11250_c0_g1_i1,blat.proc3829881.chain_1355	3
scaffold_4	retained_exon	15007303	15008130	+	asmbl_43255	none	STRG.5111.1,blat.proc3829873.chain_1448	2	STRG.5111.2,blat.proc3829873.chain_1447	2
scaffold_15	alternate_exon	6194912	6195046	+	asmbl_14191,asmbl_14192	none	STRG.18272.4,STRG.18272.5	2	STRG.18272.1,STRG.18272.2	2
scaffold_10	starts_in_intron	13633274	13633274	-	asmbl_3822	none	blat.proc3829893.chain_1466	1	STRG.12952.1,blat.proc3829893.chain_1465	2
scaffold_22	starts_in_intron	607807	607807	+	asmbl_29167	none	Trinity_GG_13644_c0_g1_i2,blat.proc3829883.chain_1736	2	STRG.24697.1,Trinity_GG_13644_c0_g1_i1,blat.proc3829883.chain_1735	3
scaffold_13	alt_donor	4376481	4376482	+	asmbl_10767	none	STRG.15749.2	1	STRG.15749.1,blat.proc3829879.chain_404	2
scaffold_20	spliced_intron	1624100	1624144	-	asmbl_26523	none	STRG.22888.3	1	blat.proc3829897.chain_3655	1
scaffold_24	starts_in_intron	10596884	10596884	-	asmbl_33204	none	blat.proc3829901.chain_311	1	STRG.26998.1,blat.proc3829901.chain_312,blat.proc3829901.chain_314	3
scaffold_8	alternate_exon	14431109	14431522	+	asmbl_52365	none	STRG.10524.2	1	STRG.10524.1,blat.proc3829875.chain_3041,blat.proc3829875.chain_3042	3
scaffold_18	starts_in_intron	7685689	7685689	+	asmbl_20801,asmbl_20804	none	STRG.21464.4,Trinity_GG_11863_c0_g1_i8,Trinity_GG_11863_c0_g1_i9,blat.proc3829881.chain_2434,blat.proc3829881.chain_2439	5	STRG.21464.1,STRG.21464.2,STRG.21464.3,blat.proc3829881.chain_2435,blat.proc3829881.chain_2436,blat.proc3829881.chain_2437,blat.proc3829881.chain_2440	7
scaffold_2	starts_in_intron	7891764	7891764	+	asmbl_24628	none	blat.proc3829871.chain_2193	1	STRG.2086.1,STRG.2086.2,STRG.2086.3,Trinity_GG_1187_c0_g1_i13,blat.proc3829871.chain_2189,blat.proc3829871.chain_2192,blat.proc3829871.chain_2195,blat.proc3829871.chain_2196,blat.proc3829871.chain_2199	9
scaffold_13	spliced_intron	221295	221368	+	asmbl_10431,asmbl_10433	none	STRG.15414.1,blat.proc3829879.chain_100,blat.proc3829879.chain_98	3	blat.proc3829879.chain_99	1
scaffold_3	starts_in_intron	14571188	14571188	-	asmbl_39348	none	blat.proc3829887.chain_3614	1	STRG.3795.1,STRG.3795.2,STRG.3795.3,blat.proc3829887.chain_3612,blat.proc3829887.chain_3613,blat.proc3829887.chain_3615	6
scaffold_2	spliced_intron	947822	948713	+	asmbl_24188	none	STRG.1574.2,blat.proc3829871.chain_1649	2	STRG.1574.1,STRG.1574.3,blat.proc3829871.chain_1645	3
scaffold_28	alternate_exon	9452177	9452317	+	asmbl_38480	none	STRG.29957.2	1	STRG.29957.1,blat.proc3829885.chain_2956	2
scaffold_22	ends_in_intron	7946042	7946042	+	asmbl_29532,asmbl_29534	none	Trinity_GG_13895_c0_g1_i3,blat.proc3829883.chain_2158,blat.proc3829883.chain_2160	3	STRG.25137.1,blat.proc3829883.chain_2159	2
scaffold_18	alt_acceptor	5584680	5584681	-	asmbl_19903	none	STRG.21304.2	1	STRG.21304.1,Trinity_GG_28951_c1_g1_i4,blat.proc3829897.chain_2182,blat.proc3829897.chain_2194,blat.proc3829897.chain_2195	5
scaffold_15	alt_acceptor	10766468	10766469	+	asmbl_14408,asmbl_14409,asmbl_14410	none	blat.proc3829879.chain_3159,blat.proc3829879.chain_3160,blat.proc3829879.chain_3161	3	STRG.18552.3,blat.proc3829879.chain_3157	2
scaffold_19	spliced_intron	7364545	7364696	+	asmbl_22255	none	STRG.22205.1,blat.proc3829881.chain_3137	2	Trinity_GG_12270_c0_g1_i2,blat.proc3829881.chain_3136	2
scaffold_13	alternate_exon	10001426	10001704	-	asmbl_10010	none	STRG.16227.3,blat.proc3829895.chain_971	2	STRG.16227.1,STRG.16227.2,blat.proc3829895.chain_968,blat.proc3829895.chain_972	4
scaffold_14	starts_in_intron	15256225	15256225	+	asmbl_12571	none	STRG.17739.3	1	STRG.17739.2	1
scaffold_28	alternate_exon	3219827	3219888	+	asmbl_38150	none	STRG.29512.1	1	STRG.29512.2	1
scaffold_10	retained_intron	3063468	3063729	-	asmbl_3067	none	STRG.12117.1,Trinity_GG_23774_c0_g1_i2,blat.proc3829893.chain_588	3	STRG.12117.2,blat.proc3829893.chain_587	2
scaffold_14	alt_acceptor	3226988	3226989	+	asmbl_11899,asmbl_11900	none	STRG.16895.1,STRG.16895.3,blat.proc3829879.chain_1544	3	STRG.16895.2	1
scaffold_27	alt_acceptor	2822761	2822762	-	asmbl_36811,asmbl_36812,asmbl_36813	none	STRG.28744.1,blat.proc3829901.chain_1859,blat.proc3829901.chain_1860,blat.proc3829901.chain_1861	4	blat.proc3829901.chain_1862	1
scaffold_4	alt_donor	8410576	8410577	+	asmbl_42893,asmbl_42894	none	STRG.4670.1,Trinity_GG_2582_c0_g1_i4,blat.proc3829873.chain_1019	3	STRG.4670.2,Trinity_GG_2582_c0_g1_i1,blat.proc3829873.chain_1018	3
scaffold_13	starts_in_intron	3247116	3247116	+	asmbl_10656	none	Trinity_GG_8603_c0_g1_i1,blat.proc3829879.chain_347	2	STRG.15616.1,blat.proc3829879.chain_349	2
scaffold_4	alt_donor	5652026	5652027	-	asmbl_41361	none	blat.proc3829889.chain_609	1	STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_605,blat.proc3829889.chain_606,blat.proc3829889.chain_608,blat.proc3829889.chain_611,blat.proc3829889.chain_612,blat.proc3829889.chain_613	10
scaffold_2	spliced_intron	18610276	18610515	-	asmbl_23817	none	STRG.2736.3,Trinity_GG_18522_c0_g1_i2,blat.proc3829887.chain_2559	3	STRG.2736.1,Trinity_GG_18522_c0_g1_i1,blat.proc3829887.chain_2560	3
scaffold_16	spliced_intron	10448430	10449544	+	asmbl_17339,asmbl_17340	none	STRG.19602.2,STRG.19602.5	2	STRG.19602.3,Trinity_GG_10708_c1_g1_i1,blat.proc3829881.chain_426,blat.proc3829881.chain_427	4
scaffold_4	alternate_exon	651237	654533	-	asmbl_41077	none	STRG.4135.1,Trinity_GG_19294_c0_g1_i2,Trinity_GG_19294_c1_g1_i1,blat.proc3829889.chain_202	4	STRG.4135.2,Trinity_GG_19294_c0_g1_i3,blat.proc3829889.chain_203	3
scaffold_7	alt_donor	9744080	9744081	+	asmbl_50975	none	STRG.9156.2,blat.proc3829875.chain_1625	2	STRG.9156.1,blat.proc3829875.chain_1624	2
scaffold_2	retained_intron	6083683	6083943	-	asmbl_23199	none	Trinity_GG_18112_c0_g1_i7,blat.proc3829887.chain_1838	2	STRG.1980.2,blat.proc3829887.chain_1842	2
scaffold_22	spliced_intron	958386	958490	+	asmbl_29200	none	STRG.24728.1,Trinity_GG_13685_c0_g1_i3,blat.proc3829883.chain_1799	3	Trinity_GG_13685_c0_g1_i2,blat.proc3829883.chain_1798	2
scaffold_11	retained_intron	8014909	8015006	-	asmbl_6793	none	blat.proc3829893.chain_2267	1	STRG.13799.1,blat.proc3829893.chain_2268	2
scaffold_9	retained_intron	3375064	3375256	+	asmbl_53873	none	blat.proc3829875.chain_3399	1	STRG.10936.1,blat.proc3829875.chain_3401,blat.proc3829875.chain_3402	3
scaffold_16	starts_in_intron	4138892	4138892	-	asmbl_16226	none	blat.proc3829897.chain_299	1	STRG.19217.2,blat.proc3829897.chain_298	2
scaffold_12	starts_in_intron	7973185	7973185	+	asmbl_8772	none	STRG.14847.3	1	STRG.14847.1,blat.proc3829877.chain_3357,blat.proc3829877.chain_3358,blat.proc3829877.chain_3360	4
scaffold_25	retained_intron	6066916	6067033	-	asmbl_34295	none	blat.proc3829901.chain_717	1	STRG.27475.1,blat.proc3829901.chain_716,blat.proc3829901.chain_718,blat.proc3829901.chain_719,blat.proc3829901.chain_721,blat.proc3829901.chain_722	6
scaffold_8	ends_in_intron	6119641	6119641	+	asmbl_51925	none	blat.proc3829875.chain_2528	1	STRG.10007.1,STRG.10007.2,Trinity_GG_5582_c0_g1_i7,blat.proc3829875.chain_2524,blat.proc3829875.chain_2527	5
scaffold_16	alternate_exon	11319357	11321346	+	asmbl_17379	none	STRG.19651.1,blat.proc3829881.chain_498	2	STRG.19651.2	1
scaffold_5	ends_in_intron	15527615	15527615	-	asmbl_46072	none	Trinity_GG_20771_c0_g1_i1,blat.proc3829889.chain_2751	2	STRG.6732.1,blat.proc3829889.chain_2750	2
scaffold_28	alt_donor	5755532	5755533	+	asmbl_38300	none	STRG.29691.1,Trinity_GG_16456_c0_g1_i1,blat.proc3829885.chain_2799	3	STRG.29691.2,Trinity_GG_16456_c0_g1_i2,blat.proc3829885.chain_2800	3
scaffold_19	starts_in_intron	8233462	8233462	+	asmbl_22308	none	Trinity_GG_12294_c0_g1_i1,blat.proc3829881.chain_3181	2	STRG.22270.1,blat.proc3829881.chain_3179,blat.proc3829881.chain_3180	3
scaffold_18	alt_donor	13150229	13150230	-	asmbl_20195	none	STRG.21746.1	1	STRG.21746.3	1
scaffold_14	retained_intron	2898639	2898894	+	asmbl_11866	none	Trinity_GG_9285_c1_g1_i1,blat.proc3829879.chain_1595	2	STRG.16876.1,STRG.16876.2,Trinity_GG_9285_c0_g1_i1,Trinity_GG_9285_c0_g1_i2,blat.proc3829879.chain_1593,blat.proc3829879.chain_1594	6
scaffold_25	retained_exon	9119662	9119772	+	asmbl_33776	none	STRG.27709.3	1	STRG.27709.2	1
scaffold_9	alt_donor	11070771	11070772	-	asmbl_55238	none	STRG.11410.1,Trinity_GG_23315_c0_g1_i2,blat.proc3829891.chain_3547	3	STRG.11410.2,Trinity_GG_23315_c0_g1_i1,blat.proc3829891.chain_3546	3
scaffold_8	alternate_exon	22159	22550	-	asmbl_52675	none	blat.proc3829891.chain_1954	1	STRG.9695.2	1
scaffold_10	retained_exon	7250740	7252303	-	asmbl_3450,asmbl_3452	none	STRG.12526.2,blat.proc3829893.chain_1023,blat.proc3829893.chain_1024	3	STRG.12526.1,blat.proc3829893.chain_1021,blat.proc3829893.chain_1022,blat.proc3829893.chain_1025	4
scaffold_2	skipped_exon	14276152	14276549	+	asmbl_24928	none	STRG.2425.2	1	STRG.2425.1,blat.proc3829871.chain_2544,blat.proc3829871.chain_2547	3
scaffold_21	alt_donor	7816517	7816518	-	asmbl_27877	none	STRG.24303.1,blat.proc3829899.chain_1359	2	STRG.24303.2	1
scaffold_2	retained_intron	13445747	13445853	-	asmbl_23531	none	blat.proc3829887.chain_2215	1	STRG.2365.1,blat.proc3829887.chain_2214,blat.proc3829887.chain_2216	3
scaffold_7	retained_intron	12449111	12449542	-	asmbl_50038,asmbl_50041	none	blat.proc3829891.chain_1604,blat.proc3829891.chain_1606	2	STRG.9342.1,STRG.9342.2,Trinity_GG_22282_c1_g1_i12,Trinity_GG_22282_c1_g1_i7,blat.proc3829891.chain_1607,blat.proc3829891.chain_1608,blat.proc3829891.chain_1610,blat.proc3829891.chain_1611	8
scaffold_5	spliced_intron	14732107	14732244	-	asmbl_45994	none	STRG.6667.1,blat.proc3829889.chain_2713	2	blat.proc3829889.chain_2716	1
scaffold_4	alt_acceptor	6343092	6343093	+	asmbl_42733	none	STRG.4503.1,blat.proc3829873.chain_819	2	STRG.4503.2	1
scaffold_5	ends_in_intron	4773495	4773495	-	asmbl_45397	none	Trinity_GG_20366_c0_g1_i2,blat.proc3829889.chain_2042	2	STRG.5933.1,STRG.5933.3,STRG.5933.4	3
scaffold_2	spliced_intron	16414060	16414370	-	asmbl_23703,asmbl_23706	none	STRG.2585.2,blat.proc3829887.chain_2409	2	STRG.2585.3,blat.proc3829887.chain_2413	2
scaffold_3	skipped_exon	16076915	16078214	-	asmbl_39426	none	STRG.3885.3	1	STRG.3885.1,STRG.3885.2,blat.proc3829887.chain_3684,blat.proc3829887.chain_3685	4
scaffold_5	alt_acceptor	10850089	10850090	+	asmbl_44366,asmbl_44368,asmbl_44369,asmbl_44370	none	STRG.6350.1,blat.proc3829873.chain_2512,blat.proc3829873.chain_2513,blat.proc3829873.chain_2514,blat.proc3829873.chain_2516	5	STRG.6350.3	1
scaffold_10	alt_acceptor	2678304	2678305	+	asmbl_4270,asmbl_4272	none	STRG.12077.2,STRG.12077.3,blat.proc3829877.chain_790	3	STRG.12077.1	1
scaffold_1	retained_intron	5705379	5705535	+	asmbl_1749,asmbl_1751	none	blat.proc3829871.chain_429,blat.proc3829871.chain_432	2	STRG.369.1,blat.proc3829871.chain_431,blat.proc3829871.chain_433	3
scaffold_6	alternate_exon	2682164	2685746	-	asmbl_48094	none	STRG.7253.1,blat.proc3829889.chain_3239	2	STRG.7253.2	1
scaffold_6	skipped_exon	12520208	12521211	-	asmbl_48751	none	STRG.8002.3	1	STRG.8002.1,STRG.8002.2,STRG.8002.4,blat.proc3829891.chain_300,blat.proc3829891.chain_301,blat.proc3829891.chain_302	6
scaffold_12	starts_in_intron	15050703	15050703	+	asmbl_9072	none	blat.proc3829877.chain_3718	1	STRG.15290.1,blat.proc3829877.chain_3717	2
scaffold_27	starts_in_intron	6741962	6741962	+	asmbl_36367	none	Trinity_GG_16067_c0_g1_i1,blat.proc3829885.chain_2158	2	STRG.29031.1,blat.proc3829885.chain_2157	2
scaffold_16	alternate_exon	8641863	8641954	+	asmbl_17232	none	STRG.19479.4	1	STRG.19479.1,STRG.19479.2,STRG.19479.3,STRG.19479.5,blat.proc3829881.chain_361,blat.proc3829881.chain_362	6
scaffold_2	skipped_exon	11256046	11256587	+	asmbl_24782	none	STRG.2255.1,blat.proc3829871.chain_2295	2	STRG.2255.2,STRG.2255.3,blat.proc3829871.chain_2294	3
scaffold_3	ends_in_intron	11897960	11897960	-	asmbl_39151	none	STRG.3615.1,Trinity_GG_18997_c0_g1_i2,blat.proc3829887.chain_3392	3	Trinity_GG_18997_c0_g1_i1,blat.proc3829887.chain_3393	2
scaffold_13	spliced_intron	2339458	2339876	+	asmbl_10574,asmbl_10576,asmbl_10579,asmbl_10581,asmbl_10582,asmbl_10583,asmbl_10585,asmbl_10586,asmbl_10588,asmbl_10589,asmbl_10590,asmbl_10591	none	STRG.15543.10,STRG.15543.11,STRG.15543.3,STRG.15543.4,STRG.15543.6,STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_154,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_161,blat.proc3829879.chain_162,blat.proc3829879.chain_164	13	blat.proc3829879.chain_152,blat.proc3829879.chain_155,blat.proc3829879.chain_160	3
scaffold_16	alt_acceptor	789895	789896	+	asmbl_16835	none	STRG.19046.1,blat.proc3829879.chain_3591	2	STRG.19046.2,STRG.19046.3,blat.proc3829879.chain_3588,blat.proc3829879.chain_3593	4
scaffold_4	alt_donor	13825697	13825698	-	asmbl_41757,asmbl_41759	none	STRG.5009.2,STRG.5009.3,blat.proc3829889.chain_1060	3	STRG.5009.1,blat.proc3829889.chain_1059	2
scaffold_12	spliced_intron	10341771	10341927	-	asmbl_7874	none	STRG.14992.1,blat.proc3829893.chain_3387	2	STRG.14992.2,STRG.14992.3,blat.proc3829893.chain_3386	3
scaffold_3	alternate_exon	9515536	9516757	+	asmbl_40185	none	STRG.3434.1,Trinity_GG_1959_c0_g1_i1,blat.proc3829871.chain_3641	3	blat.proc3829871.chain_3640	1
scaffold_2	spliced_intron	14193353	14193458	-	asmbl_23580,asmbl_23581,asmbl_23583,asmbl_23584,asmbl_23585	none	STRG.2417.1,STRG.2417.2,blat.proc3829887.chain_2208,blat.proc3829887.chain_2209,blat.proc3829887.chain_2210	5	blat.proc3829887.chain_2207,blat.proc3829887.chain_2212	2
scaffold_19	alt_donor	3559309	3559310	+	asmbl_22130	none	STRG.22033.2	1	STRG.22033.1,Trinity_GG_12191_c2_g1_i1,blat.proc3829881.chain_2998	3
scaffold_1	spliced_intron	12690151	12690339	-	asmbl_752	none	STRG.891.1,STRG.891.2,blat.proc3829887.chain_796	3	STRG.891.3,STRG.891.4,Trinity_GG_17484_c0_g1_i1,blat.proc3829887.chain_795	4
scaffold_5	alt_donor	16152037	16152038	+	asmbl_44714	none	STRG.6791.2,blat.proc3829873.chain_2885	2	STRG.6791.1,blat.proc3829873.chain_2884	2
scaffold_5	alt_acceptor	71207	71208	+	asmbl_43737	none	STRG.5568.2	1	STRG.5568.1,STRG.5568.3	2
scaffold_8	alt_acceptor	5435080	5435081	+	asmbl_51871	none	STRG.9965.1	1	STRG.9965.2,blat.proc3829875.chain_2414,blat.proc3829875.chain_2415,blat.proc3829875.chain_2416	4
scaffold_15	starts_in_intron	6884395	6884395	-	asmbl_15275	none	STRG.18290.4,Trinity_GG_27246_c1_g1_i1,blat.proc3829895.chain_2943	3	STRG.18290.2,blat.proc3829895.chain_2933,blat.proc3829895.chain_2934,blat.proc3829895.chain_2936,blat.proc3829895.chain_2940	5
scaffold_1	retained_intron	1565206	1565368	+	asmbl_1490	none	STRG.100.3	1	STRG.100.1,STRG.100.2,blat.proc3829871.chain_136,blat.proc3829871.chain_137	4
scaffold_2	spliced_intron	18730231	18730319	-	asmbl_23832	none	STRG.2751.1,blat.proc3829887.chain_2583	2	blat.proc3829887.chain_2584	1
scaffold_6	starts_in_intron	12983096	12983096	+	asmbl_47403	none	STRG.8052.1	1	blat.proc3829875.chain_473	1
scaffold_12	alt_donor	6527130	6527131	-	asmbl_7673,asmbl_7674	none	STRG.14739.1,blat.proc3829893.chain_3129,blat.proc3829893.chain_3130	3	STRG.14739.2	1
scaffold_22	skipped_exon	2387481	2389733	+	asmbl_29234	none	blat.proc3829883.chain_1745	1	STRG.24765.1,blat.proc3829883.chain_1746,blat.proc3829883.chain_1747	3
scaffold_13	ends_in_intron	1230993	1230993	+	asmbl_10519,asmbl_10522	none	STRG.15478.3,Trinity_GG_8526_c1_g1_i3,blat.proc3829879.chain_210	3	STRG.15478.1,STRG.15478.2,Trinity_GG_8526_c1_g1_i2,blat.proc3829879.chain_211	4
scaffold_2	starts_in_intron	9156594	9156594	+	asmbl_24707	none	Trinity_GG_1225_c0_g1_i2,blat.proc3829871.chain_2280	2	STRG.2163.1,STRG.2163.2,Trinity_GG_1225_c0_g1_i1,blat.proc3829871.chain_2281	4
scaffold_9	retained_exon	9614424	9614495	-	asmbl_55181	none	STRG.11319.3,blat.proc3829891.chain_3436	2	STRG.11319.2	1
scaffold_3	ends_in_intron	17116886	17116886	+	asmbl_40611	none	STRG.3957.1	1	STRG.3957.2,STRG.3957.3,STRG.3957.4,STRG.3957.6,STRG.3957.7,blat.proc3829873.chain_317	6
scaffold_10	spliced_intron	9555581	9557098	+	asmbl_4680	none	STRG.12692.1	1	STRG.12692.5	1
scaffold_12	skipped_exon	1056128	1056993	+	asmbl_8419	none	STRG.14436.3	1	STRG.14436.1,STRG.14436.2,STRG.14436.4,blat.proc3829877.chain_2886	4
scaffold_6	retained_intron	5753989	5754213	+	asmbl_46915,asmbl_46918	none	STRG.7525.1,Trinity_GG_4120_c0_g1_i1,blat.proc3829873.chain_3645,blat.proc3829873.chain_3646	4	STRG.7525.2,blat.proc3829873.chain_3644,blat.proc3829873.chain_3647	3
scaffold_5	ends_in_intron	4689474	4689474	-	asmbl_45374,asmbl_45383	none	Trinity_GG_20363_c0_g1_i19,blat.proc3829889.chain_2031,blat.proc3829889.chain_2034	3	blat.proc3829889.chain_2027,blat.proc3829889.chain_2030	2
scaffold_28	alternate_exon	5240375	5240406	+	asmbl_38272,asmbl_38273	none	STRG.29653.1,Trinity_GG_16447_c0_g1_i2,Trinity_GG_16447_c0_g1_i3,blat.proc3829885.chain_2778,blat.proc3829885.chain_2779	5	STRG.29653.3	1
scaffold_3	alternate_exon	15786075	15786353	-	asmbl_39398	none	STRG.3856.4	1	STRG.3856.1,STRG.3856.2	2
scaffold_10	starts_in_intron	4899949	4899949	-	asmbl_3233	none	Trinity_GG_23888_c0_g1_i2,blat.proc3829893.chain_775	2	STRG.12299.1	1
scaffold_12	retained_exon	2922179	2922352	-	asmbl_7465	none	STRG.14515.1,blat.proc3829893.chain_2936	2	STRG.14515.5	1
scaffold_5	retained_intron	420596	420639	-	asmbl_45168	none	STRG.5608.1	1	blat.proc3829889.chain_1663	1
scaffold_12	spliced_intron	1973797	1973924	-	asmbl_7448	none	STRG.14476.1	1	Trinity_GG_25081_c0_g1_i1,blat.proc3829893.chain_2860	2
scaffold_3	ends_in_intron	4631121	4631121	+	asmbl_39983	none	blat.proc3829871.chain_3394	1	STRG.3163.1	1
scaffold_22	alt_acceptor	7671304	7671305	-	asmbl_30184	none	STRG.25097.2	1	STRG.25097.1,blat.proc3829899.chain_2190	2
scaffold_26	retained_intron	9843220	9843314	+	asmbl_35805	none	blat.proc3829885.chain_1566	1	STRG.28526.5,blat.proc3829885.chain_1556,blat.proc3829885.chain_1558,blat.proc3829885.chain_1561,blat.proc3829885.chain_1562,blat.proc3829885.chain_1564,blat.proc3829885.chain_1567	7
scaffold_3	ends_in_intron	6832721	6832721	+	asmbl_40096	none	blat.proc3829871.chain_3485	1	STRG.3303.1,STRG.3303.2,blat.proc3829871.chain_3486	3
scaffold_16	alternate_exon	154994	155034	-	asmbl_16010	none	Trinity_GG_27691_c0_g1_i9	1	STRG.19000.1,Trinity_GG_27691_c0_g1_i4,Trinity_GG_27691_c0_g1_i8	3
scaffold_3	retained_intron	1765661	1765894	+	asmbl_39832	none	Trinity_GG_1694_c0_g2_i1,blat.proc3829871.chain_3165	2	STRG.2990.1	1
scaffold_8	spliced_intron	6018602	6018729	-	asmbl_52849	none	STRG.10005.1,Trinity_GG_22594_c0_g1_i3,blat.proc3829891.chain_2159	3	Trinity_GG_22594_c0_g1_i1,blat.proc3829891.chain_2158	2
scaffold_28	ends_in_intron	2427861	2427861	-	asmbl_37380	none	blat.proc3829901.chain_2464	1	STRG.29397.1,Trinity_GG_33457_c0_g1_i2,blat.proc3829901.chain_2463	3
scaffold_17	alt_donor	14546213	14546214	+	asmbl_18530,asmbl_18532	none	STRG.20918.1,STRG.20918.4	2	STRG.20918.3,STRG.20918.5,blat.proc3829881.chain_1763	3
scaffold_19	retained_exon	13212154	13212329	-	asmbl_21827,asmbl_21840,asmbl_21841,asmbl_21842,asmbl_21843,asmbl_21845	none	STRG.22682.1,blat.proc3829897.chain_3360,blat.proc3829897.chain_3362,blat.proc3829897.chain_3363,blat.proc3829897.chain_3364,blat.proc3829897.chain_3368,blat.proc3829897.chain_3370	7	blat.proc3829897.chain_3361	1
scaffold_16	retained_intron	1510085	1511404	+	asmbl_16870	none	STRG.19088.1,blat.proc3829879.chain_3698	2	STRG.19088.2,blat.proc3829879.chain_3697	2
scaffold_28	alt_donor	539894	539895	-	asmbl_37232,asmbl_37233,asmbl_37234,asmbl_37235	none	STRG.29258.1,STRG.29258.2,STRG.29258.3,blat.proc3829901.chain_2295,blat.proc3829901.chain_2296	5	blat.proc3829901.chain_2297	1
scaffold_21	retained_intron	11228603	11228728	-	asmbl_28121	none	STRG.24574.1,blat.proc3829899.chain_1736	2	STRG.24574.2	1
scaffold_7	alt_acceptor	8330180	8330181	-	asmbl_49819,asmbl_49821	none	STRG.9060.1,STRG.9060.2,blat.proc3829891.chain_1314,blat.proc3829891.chain_1315,blat.proc3829891.chain_1318	5	Trinity_GG_22126_c0_g1_i4,blat.proc3829891.chain_1313	2
scaffold_1	retained_intron	12916451	12916553	+	asmbl_2259,asmbl_2260	none	STRG.919.2,blat.proc3829871.chain_974	2	STRG.919.1,blat.proc3829871.chain_976	2
scaffold_28	alternate_exon	8317707	8317967	-	asmbl_37782	none	STRG.29891.3	1	STRG.29891.1,STRG.29891.2,blat.proc3829901.chain_3015	3
scaffold_5	retained_intron	16318561	16318674	+	asmbl_44746	none	blat.proc3829873.chain_2901	1	STRG.6820.1,blat.proc3829873.chain_2898,blat.proc3829873.chain_2899	3
scaffold_9	retained_exon	2799126	2799139	+	asmbl_53848	none	blat.proc3829875.chain_3367	1	STRG.10912.2,Trinity_GG_6054_c0_g1_i7,blat.proc3829875.chain_3369	3
scaffold_22	ends_in_intron	192973	192973	+	asmbl_29105	none	Trinity_GG_13622_c0_g1_i2,blat.proc3829883.chain_1686	2	STRG.24657.1	1
scaffold_26	alternate_exon	1325456	1325563	-	asmbl_34680	none	STRG.27898.5	1	STRG.27898.1,STRG.27898.2,STRG.27898.3,STRG.27898.4	4
scaffold_21	retained_intron	3117600	3118195	-	asmbl_27537	none	STRG.23926.1,Trinity_GG_30334_c0_g1_i2,blat.proc3829899.chain_975	3	STRG.23926.2	1
scaffold_1	retained_intron	6283987	6284587	-	asmbl_339	none	STRG.425.7,Trinity_GG_17251_c0_g1_i2,blat.proc3829887.chain_329	3	STRG.425.1,STRG.425.3,STRG.425.6,Trinity_GG_17251_c0_g1_i12,blat.proc3829887.chain_325,blat.proc3829887.chain_328,blat.proc3829887.chain_335	7
scaffold_10	alt_acceptor	6911504	6911505	+	asmbl_4532	none	STRG.12507.2,blat.proc3829877.chain_1028	2	STRG.12507.1	1
scaffold_13	starts_in_intron	5545751	5545751	+	asmbl_10850	none	Trinity_GG_8714_c0_g1_i4,blat.proc3829879.chain_536	2	STRG.15838.1,blat.proc3829879.chain_538,blat.proc3829879.chain_539,blat.proc3829879.chain_540	4
scaffold_4	starts_in_intron	10448206	10448206	-	asmbl_41593	none	blat.proc3829889.chain_834	1	STRG.4795.1,STRG.4795.2,STRG.4795.3,blat.proc3829889.chain_832,blat.proc3829889.chain_835,blat.proc3829889.chain_838,blat.proc3829889.chain_839	7
scaffold_1	alternate_exon	4270230	4273056	+	asmbl_1657,asmbl_1658,asmbl_1659	none	STRG.259.1,STRG.259.2,STRG.259.3,blat.proc3829871.chain_321	4	STRG.259.4	1
scaffold_1	starts_in_intron	920505	920505	+	asmbl_1437,asmbl_1438	none	STRG.48.2,Trinity_GG_8_c0_g1_i1,Trinity_GG_8_c0_g1_i3,blat.proc3829871.chain_14,blat.proc3829871.chain_17	5	STRG.48.1,Trinity_GG_8_c0_g1_i5,blat.proc3829871.chain_18	3
scaffold_9	retained_exon	645134	645512	+	asmbl_53761	none	STRG.10785.1,blat.proc3829875.chain_3238	2	STRG.10785.4	1
scaffold_1	starts_in_intron	9524251	9524251	-	asmbl_552	none	STRG.646.1,blat.proc3829887.chain_544	2	STRG.646.2	1
scaffold_17	alt_donor	9825948	9825949	-	asmbl_19245,asmbl_19247,asmbl_19248	none	STRG.20586.2,STRG.20586.4,blat.proc3829897.chain_1537,blat.proc3829897.chain_1538	4	STRG.20586.1,STRG.20586.3,blat.proc3829897.chain_1539,blat.proc3829897.chain_1540	4
scaffold_8	alt_donor	4847418	4847419	-	asmbl_52798,asmbl_52800	none	STRG.9941.1,blat.proc3829891.chain_2051,blat.proc3829891.chain_2052,blat.proc3829891.chain_2056	4	STRG.9941.2,blat.proc3829891.chain_2053	2
scaffold_12	spliced_intron	7172399	7172720	+	asmbl_8683,asmbl_8686	none	STRG.14775.2,blat.proc3829877.chain_3241,blat.proc3829877.chain_3242	3	blat.proc3829877.chain_3240,blat.proc3829877.chain_3243	2
scaffold_13	alt_donor	16138003	16138004	+	asmbl_11533	none	STRG.16640.2	1	STRG.16640.1,Trinity_GG_9180_c0_g1_i1	2
scaffold_14	spliced_intron	2899140	2899275	+	asmbl_11865	none	STRG.16876.1,Trinity_GG_9285_c0_g1_i2,blat.proc3829879.chain_1593	3	STRG.16876.2,Trinity_GG_9285_c0_g1_i1,blat.proc3829879.chain_1594	3
scaffold_21	alt_acceptor	1798761	1798762	+	asmbl_28386,asmbl_28387,asmbl_28388	none	STRG.23808.1,blat.proc3829883.chain_975,blat.proc3829883.chain_977,blat.proc3829883.chain_978	4	STRG.23808.2,blat.proc3829883.chain_976	2
scaffold_17	alt_acceptor	14037320	14037321	-	asmbl_19449	none	STRG.20870.3	1	STRG.20870.1	1
scaffold_25	spliced_intron	9337232	9337354	+	asmbl_33797,asmbl_33798,asmbl_33799,asmbl_33800	none	STRG.27743.1,blat.proc3829885.chain_770,blat.proc3829885.chain_772,blat.proc3829885.chain_773,blat.proc3829885.chain_775	5	blat.proc3829885.chain_774	1
scaffold_8	spliced_intron	12625487	12625600	-	asmbl_53213,asmbl_53215,asmbl_53217	none	STRG.10429.1,STRG.10429.2,blat.proc3829891.chain_2557,blat.proc3829891.chain_2559	4	blat.proc3829891.chain_2558,blat.proc3829891.chain_2560	2
scaffold_13	spliced_intron	3736104	3736197	+	asmbl_10710,asmbl_10711,asmbl_10712,asmbl_10713,asmbl_10714,asmbl_10716,asmbl_10717,asmbl_10718	none	STRG.15686.1,STRG.15686.2,STRG.15686.3,Trinity_GG_8631_c0_g1_i4,Trinity_GG_8631_c0_g1_i6,Trinity_GG_8631_c0_g1_i8,blat.proc3829879.chain_389,blat.proc3829879.chain_390,blat.proc3829879.chain_391,blat.proc3829879.chain_393,blat.proc3829879.chain_394,blat.proc3829879.chain_395,blat.proc3829879.chain_396	13	Trinity_GG_8631_c0_g1_i10,blat.proc3829879.chain_388	2
scaffold_4	retained_exon	19752814	19752930	+	asmbl_43506	none	STRG.5561.1,Trinity_GG_3042_c0_g1_i2,blat.proc3829873.chain_1753	3	STRG.5561.2,STRG.5561.3,Trinity_GG_3042_c0_g1_i1,blat.proc3829873.chain_1752	4
scaffold_8	spliced_intron	18089675	18090313	+	asmbl_52518	none	STRG.10702.1,blat.proc3829875.chain_3180	2	STRG.10702.3,blat.proc3829875.chain_3181	2
scaffold_19	retained_intron	8805742	8805900	+	asmbl_22361	none	STRG.22319.3	1	STRG.22319.4	1
scaffold_10	starts_in_intron	5094641	5094641	-	asmbl_3254	none	blat.proc3829893.chain_789	1	STRG.12323.1,blat.proc3829893.chain_790	2
scaffold_1	starts_in_intron	8633976	8633976	-	asmbl_470	none	blat.proc3829887.chain_451	1	STRG.568.2,STRG.568.3,blat.proc3829887.chain_445,blat.proc3829887.chain_449	4
scaffold_21	starts_in_intron	6536888	6536888	+	asmbl_28682	none	Trinity_GG_13393_c0_g1_i2,blat.proc3829883.chain_1323	2	STRG.24166.1,STRG.24166.2,blat.proc3829883.chain_1322,blat.proc3829883.chain_1324	4
scaffold_2	skipped_exon	7407518	7409546	-	asmbl_23281	none	STRG.2065.3,blat.proc3829887.chain_1876	2	STRG.2065.4,blat.proc3829887.chain_1875	2
scaffold_4	alt_acceptor	15111242	15111243	+	asmbl_43263,asmbl_43265	none	STRG.5116.2,blat.proc3829873.chain_1405	2	STRG.5116.1	1
scaffold_3	retained_intron	8167061	8167567	-	asmbl_38974	none	blat.proc3829887.chain_3134	1	blat.proc3829887.chain_3136	1
scaffold_1	alternate_exon	5185249	5185741	-	asmbl_240	none	STRG.320.1,Trinity_GG_17187_c0_g1_i2,blat.proc3829887.chain_204	3	STRG.320.2,Trinity_GG_17187_c0_g1_i3,blat.proc3829887.chain_205	3
scaffold_20	alt_acceptor	11382677	11382678	+	asmbl_26194	none	STRG.23634.4	1	STRG.23634.1,STRG.23634.2,STRG.23634.3,STRG.23634.5,Trinity_GG_13050_c0_g1_i1,Trinity_GG_13050_c0_g1_i2,Trinity_GG_13050_c0_g1_i4,blat.proc3829883.chain_704,blat.proc3829883.chain_705,blat.proc3829883.chain_707	10
scaffold_3	alternate_exon	13176884	13176922	+	asmbl_40393,asmbl_40394	none	STRG.3679.2,STRG.3679.3	2	STRG.3679.1,blat.proc3829873.chain_76,blat.proc3829873.chain_77,blat.proc3829873.chain_78,blat.proc3829873.chain_80	5
scaffold_26	alternate_exon	1321803	1324625	-	asmbl_34676,asmbl_34679	none	STRG.27898.2,STRG.27898.3,blat.proc3829901.chain_1144	3	STRG.27898.5	1
scaffold_2	starts_in_intron	1494292	1494292	+	asmbl_24228	none	Trinity_GG_913_c0_g2_i2,blat.proc3829871.chain_1686	2	STRG.1626.1,STRG.1626.2	2
scaffold_12	skipped_exon	3215826	3218027	-	asmbl_7485	none	STRG.14540.1,blat.proc3829893.chain_2913	2	STRG.14540.2,blat.proc3829893.chain_2911	2
scaffold_13	alt_acceptor	7219583	7219584	+	asmbl_11007,asmbl_11008,asmbl_11010,asmbl_11011,asmbl_11012	none	STRG.16002.1,blat.proc3829879.chain_695,blat.proc3829879.chain_698,blat.proc3829879.chain_699,blat.proc3829879.chain_700,blat.proc3829879.chain_701	6	blat.proc3829879.chain_693,blat.proc3829879.chain_696	2
scaffold_21	retained_intron	5170519	5170660	-	asmbl_27647	none	Trinity_GG_30430_c0_g1_i8,blat.proc3829899.chain_1130	2	STRG.24038.1,blat.proc3829899.chain_1128,blat.proc3829899.chain_1129,blat.proc3829899.chain_1131,blat.proc3829899.chain_1132,blat.proc3829899.chain_1134	6
scaffold_6	ends_in_intron	17383662	17383662	+	asmbl_47686	none	blat.proc3829875.chain_820	1	STRG.8436.1,STRG.8436.2,Trinity_GG_4638_c0_g1_i1,Trinity_GG_4638_c0_g1_i3,blat.proc3829875.chain_818,blat.proc3829875.chain_821	6
scaffold_19	spliced_intron	8263705	8263839	+	asmbl_22314	none	Trinity_GG_12297_c0_g1_i1	1	STRG.22277.2,Trinity_GG_12297_c0_g1_i2,blat.proc3829881.chain_3187	3
scaffold_17	alternate_exon	9595992	9596058	-	asmbl_19228,asmbl_19231	none	STRG.20568.2,blat.proc3829897.chain_1518	2	STRG.20568.3	1
scaffold_5	alternate_exon	1096728	1097094	-	asmbl_45214	none	STRG.5657.1	1	STRG.5657.4	1
scaffold_3	skipped_exon	6037685	6039291	-	asmbl_38833	none	STRG.3255.1	1	STRG.3255.2,STRG.3255.5,STRG.3255.7	3
scaffold_7	starts_in_intron	1700370	1700370	+	asmbl_50503	none	Trinity_GG_4757_c1_g1_i1,blat.proc3829875.chain_1086	2	STRG.8645.1,Trinity_GG_4757_c1_g1_i2,blat.proc3829875.chain_1085	3
scaffold_22	alt_donor	10637557	10637558	-	asmbl_30381	none	STRG.25388.1,blat.proc3829899.chain_2496	2	STRG.25388.2,blat.proc3829899.chain_2497	2
scaffold_4	spliced_intron	14087005	14087119	+	asmbl_43172,asmbl_43173	none	STRG.5028.1,STRG.5028.3,Trinity_GG_2786_c0_g1_i2,blat.proc3829873.chain_1324	4	Trinity_GG_2786_c0_g1_i1,blat.proc3829873.chain_1325	2
scaffold_1	starts_in_intron	3271082	3271082	-	asmbl_140,asmbl_141,asmbl_142	none	STRG.199.4,blat.proc3829887.chain_98,blat.proc3829887.chain_99	3	STRG.199.1,STRG.199.2,STRG.199.3,blat.proc3829887.chain_97	4
scaffold_2	alternate_exon	2909147	2909189	-	asmbl_22972,asmbl_22973	none	blat.proc3829887.chain_1510,blat.proc3829887.chain_1511	2	STRG.1728.1,STRG.1728.2,blat.proc3829887.chain_1508,blat.proc3829887.chain_1509,blat.proc3829887.chain_1512	5
scaffold_8	alt_donor	17853803	17853804	+	asmbl_52511,asmbl_52512	none	STRG.10688.2,Trinity_GG_5911_c0_g1_i1,blat.proc3829875.chain_3138	3	STRG.10688.1,Trinity_GG_5911_c0_g1_i2,blat.proc3829875.chain_3137	3
scaffold_52	alt_acceptor	14408	14409	+	asmbl_46480,asmbl_46481	none	STRG.30039.3,blat.proc3829885.chain_3104	2	STRG.30039.1,STRG.30039.2,blat.proc3829885.chain_3103,blat.proc3829885.chain_3105	4
scaffold_7	alt_acceptor	1236589	1236590	+	asmbl_50469,asmbl_50470,asmbl_50472,asmbl_50473,asmbl_50474,asmbl_50479	none	STRG.8627.2,Trinity_GG_4740_c1_g1_i2	2	STRG.8627.8	1
scaffold_10	ends_in_intron	6330603	6330603	+	asmbl_4515	none	blat.proc3829877.chain_1087	1	STRG.12455.1	1
scaffold_8	retained_intron	6018602	6018729	-	asmbl_52850	none	Trinity_GG_22594_c0_g1_i1,blat.proc3829891.chain_2158	2	STRG.10005.1,Trinity_GG_22594_c0_g1_i3,blat.proc3829891.chain_2159	3
scaffold_13	alt_donor	3322058	3322059	-	asmbl_9491	none	STRG.15625.2	1	STRG.15625.1,Trinity_GG_25777_c0_g1_i1,Trinity_GG_25777_c0_g1_i2,blat.proc3829895.chain_380,blat.proc3829895.chain_381	5
scaffold_3	alternate_exon	18754041	18757761	+	asmbl_40703	none	STRG.4059.1	1	STRG.4059.3	1
scaffold_18	retained_exon	11912892	11912993	+	asmbl_20977	none	STRG.21685.2,blat.proc3829881.chain_2645	2	STRG.21685.1	1
scaffold_12	alt_donor	4951644	4951645	-	asmbl_7599	none	STRG.14653.2,blat.proc3829893.chain_3044	2	STRG.14653.1,blat.proc3829893.chain_3045,blat.proc3829893.chain_3046	3
scaffold_5	ends_in_intron	10848614	10848614	+	asmbl_44367	none	STRG.6350.2,blat.proc3829873.chain_2510	2	STRG.6350.1,STRG.6350.3,blat.proc3829873.chain_2512,blat.proc3829873.chain_2513,blat.proc3829873.chain_2514,blat.proc3829873.chain_2516	6
scaffold_11	alt_donor	13554283	13554284	-	asmbl_7117	none	blat.proc3829893.chain_2650	1	STRG.14200.1,blat.proc3829893.chain_2651	2
scaffold_5	starts_in_intron	10539326	10539326	-	asmbl_45749	none	blat.proc3829889.chain_2424	1	STRG.6329.1,STRG.6329.3,STRG.6329.4,Trinity_GG_20579_c0_g1_i4,Trinity_GG_20579_c0_g1_i7,blat.proc3829889.chain_2425,blat.proc3829889.chain_2427,blat.proc3829889.chain_2428	8
scaffold_7	skipped_exon	9864000	9864641	-	asmbl_49906	none	blat.proc3829891.chain_1417	1	STRG.9178.1,STRG.9178.3,STRG.9178.4,blat.proc3829891.chain_1416,blat.proc3829891.chain_1419	5
scaffold_7	alt_donor	7923646	7923647	-	asmbl_49792,asmbl_49794	none	STRG.9028.1,blat.proc3829891.chain_1305,blat.proc3829891.chain_1306	3	blat.proc3829891.chain_1304	1
scaffold_12	spliced_intron	4787739	4787935	-	asmbl_7579,asmbl_7582,asmbl_7584	none	STRG.14646.3,STRG.14646.4,blat.proc3829893.chain_3020,blat.proc3829893.chain_3025	4	STRG.14646.6,blat.proc3829893.chain_3019	2
scaffold_21	skipped_exon	9840273	9840911	+	asmbl_28859	none	blat.proc3829883.chain_1513	1	STRG.24424.1,blat.proc3829883.chain_1514	2
scaffold_9	alternate_exon	4210075	4210172	+	asmbl_53928	none	STRG.11014.3	1	STRG.11014.2	1
scaffold_11	alt_acceptor	6073281	6073282	+	asmbl_5573	none	STRG.13658.3	1	STRG.13658.1,STRG.13658.2,blat.proc3829877.chain_2095	3
scaffold_2	starts_in_intron	15872674	15872674	-	asmbl_23676,asmbl_23677	none	blat.proc3829887.chain_2389,blat.proc3829887.chain_2391	2	blat.proc3829887.chain_2388,blat.proc3829887.chain_2390	2
scaffold_13	starts_in_intron	4076215	4076215	+	asmbl_10738	none	blat.proc3829879.chain_418	1	STRG.15714.1,STRG.15714.2,STRG.15714.3,blat.proc3829879.chain_416,blat.proc3829879.chain_417	5
scaffold_25	spliced_intron	185266	185787	-	asmbl_33946	none	STRG.27031.1,blat.proc3829901.chain_349	2	Trinity_GG_32148_c0_g1_i1,blat.proc3829901.chain_350	2
scaffold_23	spliced_intron	6290838	6290991	-	asmbl_31687,asmbl_31692,asmbl_31693	none	STRG.25954.1,Trinity_GG_31552_c0_g1_i2,Trinity_GG_31552_c0_g1_i5,blat.proc3829899.chain_3101,blat.proc3829899.chain_3104,blat.proc3829899.chain_3107	6	STRG.25954.2,Trinity_GG_31552_c0_g1_i3,Trinity_GG_31552_c0_g1_i4,Trinity_GG_31552_c0_g1_i6,Trinity_GG_31552_c0_g1_i7,blat.proc3829899.chain_3102,blat.proc3829899.chain_3103,blat.proc3829899.chain_3105,blat.proc3829899.chain_3106	9
scaffold_2	retained_intron	8875113	8876256	+	asmbl_24687,asmbl_24688,asmbl_24689,asmbl_24691	none	STRG.2139.1,STRG.2139.2,STRG.2139.3,blat.proc3829871.chain_2259	4	STRG.2139.4,blat.proc3829871.chain_2260	2
scaffold_8	starts_in_intron	6751954	6751954	-	asmbl_52879	none	Trinity_GG_22615_c0_g1_i2,blat.proc3829891.chain_2190	2	STRG.10036.1,blat.proc3829891.chain_2191	2
scaffold_3	alternate_exon	7714352	7714552	-	asmbl_38935	none	blat.proc3829887.chain_3170	1	STRG.3361.2,Trinity_GG_18844_c3_g1_i1	2
scaffold_20	alt_donor	2844670	2844671	-	asmbl_26601,asmbl_26602	none	STRG.23005.1,blat.proc3829899.chain_22,blat.proc3829899.chain_23	3	STRG.23005.4,blat.proc3829899.chain_24	2
scaffold_21	starts_in_intron	8001726	8001726	-	asmbl_27901	none	STRG.24325.4,blat.proc3829899.chain_1428	2	STRG.24325.1,STRG.24325.2,blat.proc3829899.chain_1424,blat.proc3829899.chain_1426	4
scaffold_2	starts_in_intron	8329376	8329376	-	asmbl_23346	none	STRG.2118.1,Trinity_GG_18198_c1_g1_i1,blat.proc3829887.chain_2024	3	STRG.2118.2,Trinity_GG_18198_c0_g1_i1,blat.proc3829887.chain_2023	3
scaffold_23	starts_in_intron	7685833	7685833	+	asmbl_31010,asmbl_31011,asmbl_31012,asmbl_31013	none	STRG.26063.7,Trinity_GG_14406_c0_g1_i1,Trinity_GG_14406_c0_g1_i5,Trinity_GG_14406_c0_g1_i6,blat.proc3829883.chain_2976,blat.proc3829883.chain_2979,blat.proc3829883.chain_2981	7	STRG.26063.1,STRG.26063.3,STRG.26063.5,STRG.26063.6,Trinity_GG_14406_c0_g1_i3,Trinity_GG_14406_c0_g1_i4,blat.proc3829883.chain_2977,blat.proc3829883.chain_2978	8
scaffold_19	starts_in_intron	3683357	3683357	+	asmbl_22131,asmbl_22137,asmbl_22138	none	STRG.22046.7,STRG.22046.8,blat.proc3829881.chain_3002,blat.proc3829881.chain_3004	4	STRG.22046.1,STRG.22046.2,STRG.22046.3,STRG.22046.4,STRG.22046.6	5
scaffold_5	spliced_intron	4696426	4696467	+	asmbl_43952	none	STRG.5917.2	1	STRG.5917.1	1
scaffold_17	spliced_intron	2566428	2566630	+	asmbl_17796	none	blat.proc3829881.chain_839	1	Trinity_GG_10964_c0_g1_i5,blat.proc3829881.chain_841	2
scaffold_18	starts_in_intron	4762990	4762990	+	asmbl_20588,asmbl_20592	none	STRG.21261.1,Trinity_GG_11674_c0_g2_i1,blat.proc3829881.chain_2092	3	Trinity_GG_11674_c0_g2_i2,blat.proc3829881.chain_2091	2
scaffold_2	spliced_intron	18964556	18964833	+	asmbl_25293	none	STRG.2766.1,blat.proc3829871.chain_2877	2	Trinity_GG_1521_c0_g1_i2,blat.proc3829871.chain_2876	2
scaffold_5	ends_in_intron	7120045	7120045	-	asmbl_45551	none	blat.proc3829889.chain_2206	1	STRG.6115.1,blat.proc3829889.chain_2205	2
scaffold_23	alt_acceptor	1125061	1125062	+	asmbl_30613	none	STRG.25572.1,blat.proc3829883.chain_2477	2	STRG.25572.2,blat.proc3829883.chain_2475	2
scaffold_7	retained_intron	10543036	10543134	+	asmbl_51011	none	blat.proc3829875.chain_1585	1	STRG.9221.1,blat.proc3829875.chain_1584	2
scaffold_22	alternate_exon	6223181	6223386	-	asmbl_30092,asmbl_30093	none	STRG.24965.1,STRG.24965.2	2	STRG.24965.4	1
scaffold_9	retained_intron	9688546	9688614	-	asmbl_55203,asmbl_55204	none	blat.proc3829891.chain_3513,blat.proc3829891.chain_3514	2	STRG.11334.3	1
scaffold_6	ends_in_intron	13917812	13917812	-	asmbl_48893	none	STRG.8132.6,Trinity_GG_21636_c2_g1_i1,blat.proc3829891.chain_442	3	STRG.8132.1,STRG.8132.2,STRG.8132.3,STRG.8132.4,STRG.8132.5,blat.proc3829891.chain_438,blat.proc3829891.chain_439,blat.proc3829891.chain_440	8
scaffold_22	starts_in_intron	593807	593807	+	asmbl_29164	none	Trinity_GG_13614_c0_g1_i1,blat.proc3829883.chain_1678	2	STRG.24695.1,Trinity_GG_13614_c0_g1_i3,Trinity_GG_13614_c0_g1_i4,blat.proc3829883.chain_1676,blat.proc3829883.chain_1677	5
scaffold_27	ends_in_intron	5787148	5787148	-	asmbl_36978	none	blat.proc3829901.chain_2100	1	STRG.28958.1,blat.proc3829901.chain_2098	2
scaffold_10	alt_acceptor	9427896	9427897	-	asmbl_3599	none	STRG.12677.1,blat.proc3829893.chain_1189	2	STRG.12677.2	1
scaffold_11	alternate_exon	8898170	8898983	-	asmbl_6867	none	STRG.13898.2	1	blat.proc3829893.chain_2309	1
scaffold_15	alt_donor	8042220	8042221	-	asmbl_15349	none	STRG.18369.1,blat.proc3829895.chain_3067	2	STRG.18369.3,STRG.18369.4,Trinity_GG_27305_c0_g1_i2,Trinity_GG_27305_c0_g1_i3,blat.proc3829895.chain_3069,blat.proc3829895.chain_3070	6
scaffold_2	alternate_exon	6901551	6903356	+	asmbl_24540	none	blat.proc3829871.chain_2015	1	STRG.2036.4	1
scaffold_28	spliced_intron	295738	295857	+	asmbl_37961,asmbl_37962,asmbl_37963,asmbl_37964	none	STRG.29243.1,STRG.29243.2,STRG.29243.3,blat.proc3829885.chain_2398,blat.proc3829885.chain_2399,blat.proc3829885.chain_2401	6	blat.proc3829885.chain_2400	1
scaffold_22	alt_acceptor	728475	728476	+	asmbl_29179,asmbl_29181	none	STRG.24711.1,STRG.24711.2,Trinity_GG_13664_c0_g1_i1,blat.proc3829883.chain_1767	4	STRG.24711.3	1
scaffold_12	starts_in_intron	15263699	15263699	-	asmbl_8200	none	blat.proc3829895.chain_57	1	STRG.15320.1,STRG.15320.2,STRG.15320.3,STRG.15320.4,STRG.15320.5,Trinity_GG_25603_c0_g1_i1,Trinity_GG_25603_c0_g1_i3,blat.proc3829895.chain_52,blat.proc3829895.chain_53,blat.proc3829895.chain_54	10
scaffold_5	starts_in_intron	7280268	7280268	+	asmbl_44145	none	Trinity_GG_3349_c0_g1_i1,blat.proc3829873.chain_2285	2	STRG.6120.1,Trinity_GG_3349_c0_g1_i2,blat.proc3829873.chain_2286	3
scaffold_8	alt_donor	6903208	6903209	+	asmbl_51957	none	blat.proc3829875.chain_2542	1	STRG.10042.1,STRG.10042.2,blat.proc3829875.chain_2536,blat.proc3829875.chain_2537,blat.proc3829875.chain_2541	5
scaffold_13	spliced_intron	8721343	8721448	+	asmbl_11129	none	STRG.16128.1,Trinity_GG_8837_c0_g1_i1,blat.proc3829879.chain_805	3	STRG.16128.2,Trinity_GG_8837_c0_g2_i1,blat.proc3829879.chain_806	3
scaffold_11	alternate_exon	2450051	2464581	-	asmbl_6478,asmbl_6480	none	STRG.13386.1,STRG.13386.2,blat.proc3829893.chain_1859,blat.proc3829893.chain_1860	4	blat.proc3829893.chain_1862	1
scaffold_13	spliced_intron	3322991	3323068	-	asmbl_9489,asmbl_9491	none	STRG.15625.1,STRG.15625.2,Trinity_GG_25777_c0_g1_i2,blat.proc3829895.chain_380	4	Trinity_GG_25777_c0_g1_i1,blat.proc3829895.chain_381	2
scaffold_3	starts_in_intron	16077046	16077046	-	asmbl_39429	none	blat.proc3829887.chain_3683	1	STRG.3885.1,STRG.3885.2,STRG.3885.3,STRG.3885.4,blat.proc3829887.chain_3684,blat.proc3829887.chain_3685	6
scaffold_22	alt_acceptor	10985938	10985939	-	asmbl_30410	none	blat.proc3829899.chain_2492	1	STRG.25414.2,STRG.25414.4,blat.proc3829899.chain_2493	3
scaffold_1	spliced_intron	4619268	4619989	+	asmbl_1683	none	STRG.295.3	1	STRG.295.1,STRG.295.2,STRG.295.4,blat.proc3829871.chain_329	4
scaffold_19	alternate_exon	2194715	2197150	-	asmbl_21254	none	STRG.21922.1,blat.proc3829897.chain_2681	2	STRG.21922.2	1
scaffold_7	retained_intron	12414914	12415002	-	asmbl_50026	none	blat.proc3829891.chain_1563	1	STRG.9334.1,blat.proc3829891.chain_1562,blat.proc3829891.chain_1565,blat.proc3829891.chain_1566	4
scaffold_6	alt_donor	16448348	16448349	-	asmbl_49070	none	STRG.8365.2,blat.proc3829891.chain_633	2	STRG.8365.1,blat.proc3829891.chain_634	2
scaffold_13	alternate_exon	7506711	7509270	-	asmbl_9846	none	STRG.16034.5,Trinity_GG_26030_c1_g1_i1,blat.proc3829895.chain_824	3	STRG.16034.3,Trinity_GG_26030_c0_g1_i4,blat.proc3829895.chain_819	3
scaffold_17	alt_acceptor	6801718	6801719	+	asmbl_18004	none	STRG.20322.4	1	STRG.20322.1,STRG.20322.2,STRG.20322.3,blat.proc3829881.chain_1106,blat.proc3829881.chain_1107,blat.proc3829881.chain_1108	6
scaffold_16	alt_acceptor	315143	315144	-	asmbl_16020,asmbl_16021,asmbl_16022	none	STRG.19011.2,STRG.19011.3,STRG.19011.4,blat.proc3829897.chain_55	4	STRG.19011.1,blat.proc3829897.chain_54	2
scaffold_13	alternate_exon	11585608	11585749	+	asmbl_11274,asmbl_11279	none	STRG.16295.1,blat.proc3829879.chain_1014,blat.proc3829879.chain_1023	3	STRG.16295.4,blat.proc3829879.chain_1017	2
scaffold_13	ends_in_intron	8116782	8116782	+	asmbl_11092	none	Trinity_GG_8846_c0_g1_i2,blat.proc3829879.chain_832	2	STRG.16080.1,STRG.16080.2,Trinity_GG_8846_c0_g1_i1,Trinity_GG_8846_c0_g1_i3,blat.proc3829879.chain_830,blat.proc3829879.chain_831	6
scaffold_5	alternate_exon	6566767	6567768	+	asmbl_44093	none	STRG.6047.4,Trinity_GG_3293_c2_g1_i1,blat.proc3829873.chain_2183	3	blat.proc3829873.chain_2180	1
scaffold_11	starts_in_intron	13683474	13683474	+	asmbl_6050	none	blat.proc3829877.chain_2698	1	STRG.14212.1,STRG.14212.2,blat.proc3829877.chain_2697	3
scaffold_20	retained_exon	1616257	1616761	-	asmbl_26518	none	STRG.22881.3	1	STRG.22881.1	1
scaffold_5	spliced_intron	10853790	10853941	+	asmbl_44366,asmbl_44368,asmbl_44369,asmbl_44370,asmbl_44371,asmbl_44372	none	STRG.6350.1,STRG.6350.3,blat.proc3829873.chain_2512,blat.proc3829873.chain_2513,blat.proc3829873.chain_2514,blat.proc3829873.chain_2515,blat.proc3829873.chain_2516	7	STRG.6350.4,blat.proc3829873.chain_2511	2
scaffold_322	spliced_intron	6574	6737	-	asmbl_40917	none	STRG.30256.4	1	Trinity_GG_33980_c0_g1_i6,Trinity_GG_34090_c0_g1_i4,blat.proc3829901.chain_3329	3
scaffold_27	alt_acceptor	4939549	4939550	+	asmbl_36282,asmbl_36285,asmbl_36286	none	STRG.28914.2,STRG.28914.6,blat.proc3829885.chain_2065,blat.proc3829885.chain_2066	4	STRG.28914.1,STRG.28914.3,STRG.28914.4,STRG.28914.5	4
scaffold_26	alternate_exon	7487618	7487882	+	asmbl_35646	none	blat.proc3829885.chain_1381	1	STRG.28365.4,Trinity_GG_15686_c0_g2_i1,blat.proc3829885.chain_1382	3
scaffold_4	alt_donor	4413750	4413751	+	asmbl_42580,asmbl_42590	none	STRG.4344.2,blat.proc3829873.chain_683,blat.proc3829873.chain_685	3	blat.proc3829873.chain_691,blat.proc3829873.chain_693	2
scaffold_20	retained_intron	8293604	8293726	+	asmbl_25914,asmbl_25915,asmbl_25916,asmbl_25918,asmbl_25919	none	STRG.23362.1,STRG.23362.2,STRG.23362.4,Trinity_GG_12893_c1_g1_i1,blat.proc3829883.chain_462	5	STRG.23362.3	1
scaffold_7	ends_in_intron	18667683	18667683	-	asmbl_50309	none	blat.proc3829891.chain_1909	1	STRG.9669.1,Trinity_GG_22449_c0_g1_i2,blat.proc3829891.chain_1908	3
scaffold_17	alternate_exon	5691370	5691413	+	asmbl_17954	none	STRG.20260.1,Trinity_GG_11101_c0_g1_i2,blat.proc3829881.chain_1065	3	STRG.20260.3	1
scaffold_11	alt_acceptor	9810098	9810099	+	asmbl_5859,asmbl_5860	none	STRG.13982.2,blat.proc3829877.chain_2471,blat.proc3829877.chain_2472	3	STRG.13982.1	1
scaffold_17	retained_intron	10037011	10037314	-	asmbl_19271,asmbl_19277	none	STRG.20608.1,STRG.20608.4,Trinity_GG_28623_c0_g1_i3,blat.proc3829897.chain_1589	4	Trinity_GG_28623_c0_g1_i2,blat.proc3829897.chain_1586	2
scaffold_11	retained_intron	4870477	4870559	-	asmbl_6620	none	blat.proc3829893.chain_2008	1	STRG.13575.1,blat.proc3829893.chain_2007	2
scaffold_5	alt_acceptor	16206596	16206597	+	asmbl_44717,asmbl_44719	none	STRG.6800.1,blat.proc3829873.chain_2889,blat.proc3829873.chain_2890,blat.proc3829873.chain_2891	4	STRG.6800.2	1
scaffold_2	alternate_exon	29243	29271	+	asmbl_24076,asmbl_24081	none	STRG.1493.1,Trinity_GG_850_c0_g1_i6,blat.proc3829871.chain_1521	3	STRG.1493.3,Trinity_GG_850_c0_g1_i1,Trinity_GG_850_c0_g1_i2,blat.proc3829871.chain_1524,blat.proc3829871.chain_1525,blat.proc3829871.chain_1526,blat.proc3829871.chain_1527	7
scaffold_4	retained_intron	5215330	5215445	-	asmbl_41303	none	STRG.4413.2,blat.proc3829889.chain_515	2	STRG.4413.1,blat.proc3829889.chain_516	2
scaffold_5	retained_exon	18819599	18819678	+	asmbl_44944	none	STRG.7001.1,blat.proc3829873.chain_3138	2	STRG.7001.2	1
scaffold_2	alt_acceptor	17159517	17159518	+	asmbl_25195	none	STRG.2615.2,blat.proc3829871.chain_2838	2	STRG.2615.1,blat.proc3829871.chain_2839	2
scaffold_14	spliced_intron	2374520	2375890	-	asmbl_12916,asmbl_12922	none	STRG.16839.5,blat.proc3829895.chain_1581	2	STRG.16839.2,STRG.16839.6,Trinity_GG_26463_c0_g1_i6,blat.proc3829895.chain_1585,blat.proc3829895.chain_1588	5
scaffold_9	alternate_exon	3675428	3676946	-	asmbl_54884	none	STRG.10971.3,Trinity_GG_23073_c0_g1_i12,Trinity_GG_23073_c0_g1_i14,blat.proc3829891.chain_3075,blat.proc3829891.chain_3079	5	Trinity_GG_23073_c0_g2_i1,blat.proc3829891.chain_3086	2
scaffold_1	starts_in_intron	16248567	16248567	+	asmbl_2454	none	Trinity_GG_688_c0_g1_i5,blat.proc3829871.chain_1231	2	STRG.1133.1	1
scaffold_2	retained_intron	7925080	7925321	-	asmbl_23318	none	blat.proc3829887.chain_2033	1	STRG.2092.1,STRG.2092.2,blat.proc3829887.chain_2034,blat.proc3829887.chain_2036	4
scaffold_3	spliced_intron	6189213	6189316	-	asmbl_38865	none	blat.proc3829887.chain_3012	1	STRG.3262.4	1
scaffold_13	alt_donor	2349054	2349055	+	asmbl_10575,asmbl_10579,asmbl_10580,asmbl_10581,asmbl_10582,asmbl_10583,asmbl_10584,asmbl_10585,asmbl_10588	none	STRG.15543.6,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161,blat.proc3829879.chain_162	9	STRG.15543.3,STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_156	4
scaffold_2	alt_acceptor	2995448	2995449	-	asmbl_22976	none	STRG.1746.1	1	STRG.1746.2	1
scaffold_5	ends_in_intron	4855949	4855949	-	asmbl_45407	none	blat.proc3829889.chain_2018	1	STRG.5937.1,STRG.5937.2,blat.proc3829889.chain_2016,blat.proc3829889.chain_2017,blat.proc3829889.chain_2019	5
scaffold_2	alt_donor	5183931	5183932	-	asmbl_23159	none	STRG.1936.2,blat.proc3829887.chain_1860	2	blat.proc3829887.chain_1859	1
scaffold_6	alt_acceptor	13176586	13176587	+	asmbl_47416,asmbl_47417	none	STRG.8069.1,STRG.8069.3,blat.proc3829875.chain_486,blat.proc3829875.chain_488	4	STRG.8069.2,blat.proc3829875.chain_487	2
scaffold_13	alt_acceptor	3352902	3352903	-	asmbl_9497	none	STRG.15631.2	1	STRG.15631.1,blat.proc3829895.chain_390	2
scaffold_19	skipped_exon	10222451	10224393	+	asmbl_22436	none	STRG.22389.3	1	STRG.22389.1,STRG.22389.2,STRG.22389.4,blat.proc3829881.chain_3315,blat.proc3829881.chain_3317	5
scaffold_11	alt_donor	13247184	13247185	+	asmbl_6015	none	blat.proc3829877.chain_2657	1	blat.proc3829877.chain_2659	1
scaffold_18	starts_in_intron	7868239	7868239	+	asmbl_20830,asmbl_20832	none	blat.proc3829881.chain_2472,blat.proc3829881.chain_2477	2	STRG.21477.1,STRG.21477.2,STRG.21477.3,STRG.21477.4,STRG.21477.5,STRG.21477.6,Trinity_GG_11877_c0_g1_i6,blat.proc3829881.chain_2467,blat.proc3829881.chain_2469,blat.proc3829881.chain_2470,blat.proc3829881.chain_2473,blat.proc3829881.chain_2474,blat.proc3829881.chain_2476	13
scaffold_20	alt_acceptor	8266416	8266417	+	asmbl_25912	none	STRG.23357.1	1	blat.proc3829883.chain_434	1
scaffold_39	ends_in_intron	33677	33677	-	asmbl_41023	none	STRG.30019.4,blat.proc3829901.chain_3117	2	STRG.30019.1,STRG.30019.2,STRG.30019.3	3
scaffold_10	retained_intron	1794196	1794683	+	asmbl_4240	none	Trinity_GG_6693_c0_g1_i1,blat.proc3829877.chain_740	2	blat.proc3829877.chain_739	1
scaffold_25	spliced_intron	801994	802101	-	asmbl_33991,asmbl_33994,asmbl_33995	none	STRG.27118.1,STRG.27118.3,STRG.27118.4	3	STRG.27118.5,Trinity_GG_32200_c0_g1_i3,blat.proc3829901.chain_439	3
scaffold_13	skipped_exon	14561719	14563633	-	asmbl_10164	none	STRG.16497.3	1	STRG.16497.4	1
scaffold_27	skipped_exon	2641245	2642085	+	asmbl_36056	none	STRG.28719.1,blat.proc3829885.chain_1794	2	STRG.28719.2,blat.proc3829885.chain_1793	2
scaffold_10	alt_acceptor	4156840	4156841	-	asmbl_3185	none	STRG.12242.3	1	STRG.12242.1,STRG.12242.2,blat.proc3829893.chain_685,blat.proc3829893.chain_686,blat.proc3829893.chain_687	5
scaffold_2	retained_exon	9817364	9817425	-	asmbl_23406	none	STRG.2197.2	1	STRG.2197.1,blat.proc3829887.chain_2107	2
scaffold_16	ends_in_intron	1779787	1779787	+	asmbl_16874,asmbl_16879	none	STRG.19095.2,blat.proc3829879.chain_3711,blat.proc3829879.chain_3714	3	STRG.19095.1,blat.proc3829879.chain_3709,blat.proc3829879.chain_3712	3
scaffold_2	spliced_intron	6765125	6765361	+	asmbl_24517,asmbl_24522	none	STRG.2035.1,Trinity_GG_1102_c0_g1_i1,Trinity_GG_1102_c0_g1_i5,blat.proc3829871.chain_2008,blat.proc3829871.chain_2012	5	Trinity_GG_1102_c0_g1_i10,Trinity_GG_1102_c0_g1_i11,Trinity_GG_1102_c0_g1_i2,Trinity_GG_1102_c0_g1_i4,Trinity_GG_1102_c0_g1_i6,Trinity_GG_1102_c0_g1_i7,blat.proc3829871.chain_2005,blat.proc3829871.chain_2006,blat.proc3829871.chain_2007,blat.proc3829871.chain_2010,blat.proc3829871.chain_2011,blat.proc3829871.chain_2013	12
scaffold_4	retained_intron	4095323	4095843	+	asmbl_42546,asmbl_42552,asmbl_42553	none	STRG.4313.2,blat.proc3829873.chain_632,blat.proc3829873.chain_634	3	STRG.4313.3,blat.proc3829873.chain_636	2
scaffold_26	alt_donor	1322195	1322196	-	asmbl_34675,asmbl_34677	none	STRG.27898.1,STRG.27898.4,blat.proc3829901.chain_1143	3	STRG.27898.2,STRG.27898.3,blat.proc3829901.chain_1142,blat.proc3829901.chain_1144	4
scaffold_9	spliced_intron	16562642	16563669	-	asmbl_55544,asmbl_55545,asmbl_55547,asmbl_55548,asmbl_55549	none	STRG.11797.1,STRG.11797.2,STRG.11797.3,STRG.11797.4,STRG.11797.5,Trinity_GG_23481_c0_g3_i5,Trinity_GG_23481_c0_g3_i6,blat.proc3829893.chain_85,blat.proc3829893.chain_88	9	STRG.11797.6,blat.proc3829893.chain_83,blat.proc3829893.chain_84	3
scaffold_15	alt_acceptor	11402046	11402047	-	asmbl_15510	none	STRG.18596.5,blat.proc3829895.chain_3374	2	STRG.18596.3,blat.proc3829895.chain_3375	2
scaffold_7	retained_intron	8326694	8326876	-	asmbl_49820	none	Trinity_GG_22126_c0_g1_i8,blat.proc3829891.chain_1317	2	STRG.9060.2	1
scaffold_19	spliced_intron	30998	31076	+	asmbl_21972	none	STRG.21811.1,Trinity_GG_12057_c0_g1_i2,blat.proc3829881.chain_2765	3	Trinity_GG_12057_c0_g1_i3,blat.proc3829881.chain_2767	2
scaffold_6	spliced_intron	11114758	11114940	-	asmbl_48676,asmbl_48677,asmbl_48678	none	STRG.7918.1,STRG.7918.2,Trinity_GG_21518_c0_g1_i4,blat.proc3829891.chain_215	4	STRG.7918.3,Trinity_GG_21518_c0_g1_i1,blat.proc3829891.chain_213	3
scaffold_7	alt_acceptor	3955080	3955081	-	asmbl_49643,asmbl_49644,asmbl_49648,asmbl_49649,asmbl_49650	none	STRG.8791.1,STRG.8791.2,blat.proc3829891.chain_1086,blat.proc3829891.chain_1088,blat.proc3829891.chain_1091,blat.proc3829891.chain_1092,blat.proc3829891.chain_1093	7	blat.proc3829891.chain_1089,blat.proc3829891.chain_1090	2
scaffold_28	alt_donor	3541010	3541011	-	asmbl_37483,asmbl_37485	none	STRG.29547.1,STRG.29547.3,blat.proc3829901.chain_2643	3	STRG.29547.2,blat.proc3829901.chain_2644	2
scaffold_1	spliced_intron	12452095	12452203	+	asmbl_2209,asmbl_2210	none	STRG.857.1,STRG.857.2,blat.proc3829871.chain_949	3	blat.proc3829871.chain_947	1
scaffold_14	alt_donor	7495698	7495699	+	asmbl_12146	none	STRG.17177.1,blat.proc3829879.chain_1838	2	STRG.17177.3	1
scaffold_1	alt_donor	9196544	9196545	+	asmbl_1953,asmbl_1955	none	STRG.608.1,STRG.608.3,Trinity_GG_384_c0_g1_i1,blat.proc3829871.chain_666	4	STRG.608.2,Trinity_GG_384_c0_g1_i2,blat.proc3829871.chain_667	3
scaffold_15	spliced_intron	4232612	4232777	+	asmbl_14070,asmbl_14071,asmbl_14072,asmbl_14073,asmbl_14074,asmbl_14075,asmbl_14076	none	STRG.18160.1,STRG.18160.2,blat.proc3829879.chain_2806,blat.proc3829879.chain_2808,blat.proc3829879.chain_2809,blat.proc3829879.chain_2810,blat.proc3829879.chain_2811,blat.proc3829879.chain_2813,blat.proc3829879.chain_2814	9	Trinity_GG_9974_c0_g1_i3,blat.proc3829879.chain_2812	2
scaffold_9	alternate_exon	11796217	11796405	-	asmbl_55270	none	blat.proc3829891.chain_3592	1	STRG.11484.1,STRG.11484.2,blat.proc3829891.chain_3590,blat.proc3829891.chain_3591,blat.proc3829891.chain_3593	5
scaffold_26	starts_in_intron	5509820	5509820	+	asmbl_35537	none	Trinity_GG_15608_c0_g1_i1,blat.proc3829885.chain_1248	2	STRG.28240.1,blat.proc3829885.chain_1249	2
scaffold_5	alternate_exon	990447	990573	+	asmbl_43772	none	blat.proc3829873.chain_1821	1	STRG.5645.2,blat.proc3829873.chain_1820	2
scaffold_4	alternate_exon	16872468	16872910	-	asmbl_41980,asmbl_41981	none	STRG.5279.3,STRG.5279.4	2	STRG.5279.1,blat.proc3829889.chain_1280,blat.proc3829889.chain_1282	3
scaffold_27	retained_exon	2551118	2551162	-	asmbl_36781	none	STRG.28710.2,blat.proc3829901.chain_1863	2	STRG.28710.1,blat.proc3829901.chain_1864	2
scaffold_5	spliced_intron	9582795	9582912	-	asmbl_45674,asmbl_45675,asmbl_45676	none	STRG.6268.1,Trinity_GG_20553_c0_g1_i1,blat.proc3829889.chain_2363,blat.proc3829889.chain_2364,blat.proc3829889.chain_2365	5	Trinity_GG_20553_c0_g1_i2,blat.proc3829889.chain_2362	2
scaffold_12	alternate_exon	14290451	14290670	-	asmbl_8133	none	STRG.15255.2,blat.proc3829893.chain_3649	2	STRG.15255.1	1
scaffold_1	alt_acceptor	18033269	18033270	-	asmbl_1076	none	STRG.1267.1,Trinity_GG_17699_c0_g1_i1,blat.proc3829887.chain_1168	3	STRG.1267.2,STRG.1267.3	2
scaffold_21	alt_donor	406306	406307	-	asmbl_27345	none	STRG.23722.5	1	STRG.23722.4,Trinity_GG_30229_c0_g1_i7,Trinity_GG_30229_c0_g1_i9,blat.proc3829899.chain_770,blat.proc3829899.chain_771	5
scaffold_2	spliced_intron	888918	889046	+	asmbl_24148,asmbl_24149	none	STRG.1564.5,blat.proc3829871.chain_1546	2	STRG.1564.1,STRG.1564.2,STRG.1564.3,STRG.1564.4,Trinity_GG_856_c0_g1_i3,blat.proc3829871.chain_1548	6
scaffold_1	retained_exon	5731445	5731596	-	asmbl_294,asmbl_295,asmbl_297	none	STRG.379.1,STRG.379.2,blat.proc3829887.chain_257,blat.proc3829887.chain_259,blat.proc3829887.chain_260	5	Trinity_GG_17221_c0_g1_i4,blat.proc3829887.chain_258	2
scaffold_21	ends_in_intron	1633375	1633375	+	asmbl_28367	none	blat.proc3829883.chain_984	1	STRG.23803.1,STRG.23803.2,blat.proc3829883.chain_983,blat.proc3829883.chain_985	4
scaffold_2	ends_in_intron	13325997	13325997	+	asmbl_24865	none	STRG.2342.4	1	STRG.2342.1,STRG.2342.2,STRG.2342.3,STRG.2342.5,blat.proc3829871.chain_2471,blat.proc3829871.chain_2472,blat.proc3829871.chain_2473	7
scaffold_16	spliced_intron	809175	809692	-	asmbl_16077,asmbl_16079,asmbl_16080,asmbl_16082	none	STRG.19052.1,STRG.19052.2,STRG.19052.4,blat.proc3829895.chain_3748,blat.proc3829895.chain_3749	5	STRG.19052.3,blat.proc3829895.chain_3746,blat.proc3829895.chain_3747	3
scaffold_6	skipped_exon	14195603	14197732	+	asmbl_47530	none	STRG.8178.2,blat.proc3829875.chain_525	2	STRG.8178.1,STRG.8178.3,blat.proc3829875.chain_527,blat.proc3829875.chain_528	4
scaffold_21	alt_acceptor	5280792	5280793	-	asmbl_27663,asmbl_27664,asmbl_27667	none	STRG.24056.3,STRG.24056.4,Trinity_GG_30438_c0_g1_i4,blat.proc3829899.chain_1148	4	STRG.24056.2,blat.proc3829899.chain_1146	2
scaffold_2	alt_acceptor	6510561	6510562	-	asmbl_23236,asmbl_23238	none	STRG.2013.2,blat.proc3829887.chain_1932	2	STRG.2013.1,STRG.2013.3,blat.proc3829887.chain_1931	3
scaffold_17	skipped_exon	2356401	2358464	+	asmbl_17766,asmbl_17767,asmbl_17770	none	STRG.20017.4,STRG.20017.5,STRG.20017.6	3	STRG.20017.1,STRG.20017.2,STRG.20017.7,blat.proc3829881.chain_852,blat.proc3829881.chain_853	5
scaffold_15	alt_acceptor	4786799	4786800	-	asmbl_15166	none	STRG.18181.2,blat.proc3829895.chain_2915	2	STRG.18181.1	1
scaffold_4	retained_intron	10872269	10872362	-	asmbl_41607	none	blat.proc3829889.chain_806	1	STRG.4807.1,blat.proc3829889.chain_807,blat.proc3829889.chain_808,blat.proc3829889.chain_809	4
scaffold_7	alt_donor	4178777	4178778	+	asmbl_50600,asmbl_50603	none	STRG.8807.1,STRG.8807.3,blat.proc3829875.chain_1171	3	STRG.8807.2,blat.proc3829875.chain_1170	2
scaffold_19	starts_in_intron	12063186	12063186	-	asmbl_21659	none	Trinity_GG_29492_c0_g1_i2,blat.proc3829897.chain_3118	2	STRG.22513.1,Trinity_GG_29492_c0_g1_i1,blat.proc3829897.chain_3117	3
scaffold_8	retained_exon	12326315	12326390	-	asmbl_53187,asmbl_53194,asmbl_53195	none	STRG.10399.1,STRG.10399.2,blat.proc3829891.chain_2527,blat.proc3829891.chain_2530	4	STRG.10399.4,blat.proc3829891.chain_2531	2
scaffold_3026	alt_donor	358	359	+	asmbl_40862	none	STRG.30791.1	1	STRG.30791.3	1
scaffold_10	retained_exon	1976446	1976633	-	asmbl_3004	none	STRG.12040.3	1	STRG.12040.2,blat.proc3829893.chain_495	2
scaffold_5	spliced_intron	14261375	14261517	+	asmbl_44586,asmbl_44588,asmbl_44590	none	STRG.6629.1,STRG.6629.2,blat.proc3829873.chain_2764,blat.proc3829873.chain_2767,blat.proc3829873.chain_2769	5	STRG.6629.3,Trinity_GG_3625_c0_g1_i10,Trinity_GG_3625_c0_g1_i7,blat.proc3829873.chain_2762,blat.proc3829873.chain_2763,blat.proc3829873.chain_2765,blat.proc3829873.chain_2766	7
scaffold_13	alternate_exon	1234811	1234983	+	asmbl_10521	none	STRG.15478.4	1	STRG.15478.1,STRG.15478.2,blat.proc3829879.chain_207	3
scaffold_10	retained_exon	16258477	16258562	+	asmbl_4983,asmbl_4984	none	STRG.13097.1,STRG.13097.3	2	STRG.13097.2,Trinity_GG_7185_c0_g1_i2,blat.proc3829877.chain_1597,blat.proc3829877.chain_1598	4
scaffold_1	alt_donor	6752969	6752970	+	asmbl_1844	none	STRG.461.2,blat.proc3829871.chain_517	2	STRG.461.1,blat.proc3829871.chain_516	2
scaffold_13	spliced_intron	4078795	4078887	+	asmbl_10739,asmbl_10741	none	STRG.15718.1,STRG.15718.3,blat.proc3829879.chain_426	3	STRG.15718.2,blat.proc3829879.chain_425	2
scaffold_20	skipped_exon	651340	653728	-	asmbl_26440	none	STRG.22754.1,blat.proc3829897.chain_3535	2	STRG.22754.2	1
scaffold_2	spliced_intron	15274632	15274740	+	asmbl_25035,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25044,asmbl_25045	none	STRG.2481.1,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	8	blat.proc3829871.chain_2536	1
scaffold_23	starts_in_intron	7022278	7022278	+	asmbl_30961	none	Trinity_GG_14349_c0_g1_i2,blat.proc3829883.chain_2891	2	STRG.26008.1	1
scaffold_6	retained_exon	885370	885681	-	asmbl_48032	none	STRG.7153.1	1	STRG.7153.3	1
scaffold_7	starts_in_intron	32728	32728	+	asmbl_50418	none	STRG.8577.3,blat.proc3829875.chain_1005	2	STRG.8577.1,STRG.8577.2,blat.proc3829875.chain_1007	3
scaffold_13	alternate_exon	2657155	2658669	-	asmbl_9430	none	STRG.15557.1,Trinity_GG_25695_c0_g1_i1,Trinity_GG_25695_c0_g1_i2,blat.proc3829895.chain_240,blat.proc3829895.chain_245,blat.proc3829895.chain_246	6	blat.proc3829895.chain_236	1
scaffold_6	alt_acceptor	7516477	7516478	-	asmbl_48433,asmbl_48435,asmbl_48436	none	STRG.7647.1,STRG.7647.4,blat.proc3829889.chain_3680,blat.proc3829889.chain_3684	4	STRG.7647.3,blat.proc3829889.chain_3683	2
scaffold_22	alternate_exon	10701643	10701835	+	asmbl_29653	none	STRG.25393.1,Trinity_GG_14040_c0_g1_i1,blat.proc3829883.chain_2363	3	STRG.25393.2,Trinity_GG_14040_c0_g1_i2,blat.proc3829883.chain_2364	3
scaffold_21	skipped_exon	7937048	7937954	-	asmbl_27890	none	blat.proc3829899.chain_1372	1	STRG.24314.1,blat.proc3829899.chain_1370,blat.proc3829899.chain_1374	3
scaffold_22	alt_donor	6956981	6956982	-	asmbl_30117,asmbl_30118	none	STRG.25002.2,STRG.25002.3	2	STRG.25002.1	1
scaffold_17	alternate_exon	8398576	8398679	-	asmbl_19139	none	STRG.20450.1,blat.proc3829897.chain_1386	2	STRG.20450.2,Trinity_GG_28499_c0_g1_i2,blat.proc3829897.chain_1385	3
scaffold_18	spliced_intron	9787711	9788236	-	asmbl_20118	none	STRG.21574.2	1	Trinity_GG_29074_c0_g1_i2,blat.proc3829897.chain_2420	2
scaffold_15	spliced_intron	2823948	2824025	-	asmbl_15061,asmbl_15063	none	STRG.18059.2,Trinity_GG_27178_c0_g1_i1,Trinity_GG_27178_c0_g1_i2,blat.proc3829895.chain_2814	4	STRG.18059.1	1
scaffold_17	alternate_exon	2276717	2276935	-	asmbl_18786	none	STRG.20005.2,blat.proc3829897.chain_943	2	STRG.20005.1,blat.proc3829897.chain_940	2
scaffold_5	alt_acceptor	5169340	5169341	-	asmbl_45421	none	STRG.5961.1	1	STRG.5961.2	1
scaffold_3	spliced_intron	14425017	14426154	+	asmbl_40481	none	STRG.3785.1,Trinity_GG_2146_c0_g1_i2,blat.proc3829873.chain_229	3	STRG.3785.2,STRG.3785.3,Trinity_GG_2146_c0_g1_i3,Trinity_GG_2146_c0_g1_i5,blat.proc3829873.chain_230,blat.proc3829873.chain_231	6
scaffold_18	alternate_exon	10929668	10929703	-	asmbl_20150	none	STRG.21647.3	1	STRG.21647.1,blat.proc3829897.chain_2473	2
scaffold_9	alt_donor	16575103	16575104	+	asmbl_54582	none	STRG.11786.2,blat.proc3829877.chain_536	2	STRG.11786.3,blat.proc3829877.chain_535	2
scaffold_25	alt_acceptor	8049524	8049525	+	asmbl_33712	none	blat.proc3829885.chain_651	1	STRG.27619.1,blat.proc3829885.chain_650	2
scaffold_43	retained_intron	829	875	-	asmbl_43670	none	STRG.30025.2	1	STRG.30025.4	1
scaffold_25	retained_intron	8707410	8707661	+	asmbl_33746	none	STRG.27679.2,blat.proc3829885.chain_699	2	STRG.27679.3,blat.proc3829885.chain_692,blat.proc3829885.chain_695,blat.proc3829885.chain_698	4
scaffold_1	spliced_intron	2782343	2782775	-	asmbl_131	none	STRG.172.2,blat.proc3829887.chain_73	2	STRG.172.1,Trinity_GG_17117_c0_g1_i1,blat.proc3829887.chain_74,blat.proc3829887.chain_75	4
scaffold_27	alt_acceptor	3425389	3425390	+	asmbl_36165	none	STRG.28808.1	1	STRG.28808.2	1
scaffold_2	starts_in_intron	17708973	17708973	-	asmbl_23753,asmbl_23754	none	STRG.2660.2,STRG.2660.3	2	STRG.2660.1,blat.proc3829887.chain_2486,blat.proc3829887.chain_2487	3
scaffold_8	spliced_intron	18161229	18161474	-	asmbl_53521,asmbl_53522,asmbl_53525,asmbl_53526	none	STRG.10720.1,Trinity_GG_22981_c0_g1_i1,Trinity_GG_22981_c0_g1_i8,Trinity_GG_22981_c0_g1_i9,blat.proc3829891.chain_2908,blat.proc3829891.chain_2910,blat.proc3829891.chain_2911,blat.proc3829891.chain_2912,blat.proc3829891.chain_2913	9	Trinity_GG_22981_c0_g1_i2,Trinity_GG_22981_c0_g1_i6,blat.proc3829891.chain_2907,blat.proc3829891.chain_2909	4
scaffold_9	ends_in_intron	6878591	6878591	+	asmbl_54096	none	Trinity_GG_6229_c1_g1_i1,blat.proc3829875.chain_3670	2	STRG.11188.1,blat.proc3829875.chain_3669	2
scaffold_1	alternate_exon	19038553	19042447	+	asmbl_2565	none	blat.proc3829871.chain_1392	1	STRG.1337.4	1
scaffold_26	alt_acceptor	3623158	3623159	+	asmbl_35333	none	STRG.28026.2,blat.proc3829885.chain_998	2	STRG.28026.3	1
scaffold_4	retained_intron	13429478	13429669	+	asmbl_43130	none	STRG.4980.1	1	STRG.4980.2,STRG.4980.3,STRG.4980.4	3
scaffold_16	alt_acceptor	3742281	3742282	-	asmbl_16170	none	STRG.19165.2	1	STRG.19165.1,blat.proc3829897.chain_208	2
scaffold_8	retained_intron	12693374	12693431	+	asmbl_52323,asmbl_52324	none	blat.proc3829875.chain_2944,blat.proc3829875.chain_2947	2	STRG.10436.1,STRG.10436.2,blat.proc3829875.chain_2949	3
scaffold_23	alternate_exon	4158579	4158622	+	asmbl_30788	none	STRG.25814.2,Trinity_GG_14238_c0_g1_i1,blat.proc3829883.chain_2686	3	STRG.25814.1	1
scaffold_22	ends_in_intron	6130439	6130439	+	asmbl_29394	none	Trinity_GG_13800_c2_g1_i4,blat.proc3829883.chain_2006	2	STRG.24955.7,blat.proc3829883.chain_2007	2
scaffold_2	spliced_intron	956971	957115	-	asmbl_22851,asmbl_22852	none	STRG.1572.1,STRG.1572.2,blat.proc3829887.chain_1425	3	Trinity_GG_17872_c0_g1_i2,blat.proc3829887.chain_1426	2
scaffold_28	alt_acceptor	1641658	1641659	+	asmbl_38010,asmbl_38012,asmbl_38013	none	STRG.29333.1,STRG.29333.2,blat.proc3829885.chain_2464,blat.proc3829885.chain_2465	4	STRG.29333.3	1
scaffold_1	starts_in_intron	20498991	20498991	-	asmbl_1182	none	STRG.1401.1,blat.proc3829887.chain_1281	2	blat.proc3829887.chain_1280	1
scaffold_28	spliced_intron	233915	233981	+	asmbl_37949,asmbl_37950,asmbl_37951,asmbl_37954	none	STRG.29233.1,blat.proc3829885.chain_2387,blat.proc3829885.chain_2388,blat.proc3829885.chain_2391	4	STRG.29233.2,STRG.29233.3	2
scaffold_16	ends_in_intron	3570014	3570014	-	asmbl_16160	none	Trinity_GG_27773_c0_g1_i5,blat.proc3829897.chain_193	2	STRG.19160.1,STRG.19160.2,STRG.19160.3,Trinity_GG_27773_c0_g1_i6,Trinity_GG_27773_c0_g1_i8,blat.proc3829897.chain_190,blat.proc3829897.chain_192	7
scaffold_17	spliced_intron	2533988	2534159	-	asmbl_18800,asmbl_18801,asmbl_18803	none	STRG.20035.1,STRG.20035.2,blat.proc3829897.chain_984,blat.proc3829897.chain_985,blat.proc3829897.chain_986	5	blat.proc3829897.chain_987	1
scaffold_19	retained_intron	8124919	8125012	-	asmbl_21485	none	blat.proc3829897.chain_2969	1	STRG.22253.1,Trinity_GG_29404_c0_g1_i2,blat.proc3829897.chain_2968	3
scaffold_6	alternate_exon	14178030	14180729	-	asmbl_48925,asmbl_48926,asmbl_48927,asmbl_48929	none	STRG.8173.1,STRG.8173.2,blat.proc3829891.chain_508,blat.proc3829891.chain_509,blat.proc3829891.chain_510	5	blat.proc3829891.chain_511	1
scaffold_5	ends_in_intron	10652513	10652513	+	asmbl_44355	none	blat.proc3829873.chain_2503	1	STRG.6337.1,STRG.6337.2,blat.proc3829873.chain_2500	3
scaffold_2	alt_acceptor	15375636	15375637	+	asmbl_25061	none	STRG.2491.1,blat.proc3829871.chain_2688	2	STRG.2491.2	1
scaffold_12	alt_acceptor	11324732	11324733	+	asmbl_8927	none	STRG.15051.3	1	STRG.15051.1,STRG.15051.2,Trinity_GG_8310_c0_g1_i1,Trinity_GG_8310_c0_g1_i2,blat.proc3829877.chain_3549,blat.proc3829877.chain_3550	6
scaffold_28	spliced_intron	6926010	6926670	-	asmbl_37693	none	STRG.29744.2,blat.proc3829901.chain_2889	2	STRG.29744.1,Trinity_GG_33697_c0_g1_i1,blat.proc3829901.chain_2888	3
scaffold_1	alt_donor	5962826	5962827	-	asmbl_310	none	blat.proc3829887.chain_270	1	STRG.395.1,blat.proc3829887.chain_271,blat.proc3829887.chain_273	3
scaffold_5	skipped_exon	14261932	14262734	+	asmbl_44590	none	blat.proc3829873.chain_2769	1	blat.proc3829873.chain_2765	1
scaffold_11	ends_in_intron	5492259	5492259	-	asmbl_6637	none	Trinity_GG_24622_c0_g1_i3,blat.proc3829893.chain_2053	2	STRG.13604.1,blat.proc3829893.chain_2054,blat.proc3829893.chain_2056	3
scaffold_5	spliced_intron	189945	189976	+	asmbl_43751	none	STRG.5581.3	1	STRG.5581.1,STRG.5581.2,STRG.5581.4,Trinity_GG_3085_c4_g1_i2,Trinity_GG_3085_c4_g1_i4,Trinity_GG_3085_c4_g1_i6,blat.proc3829873.chain_1832	7
scaffold_14	alternate_exon	9298412	9298580	-	asmbl_13354,asmbl_13357	none	STRG.17324.2,blat.proc3829895.chain_2046,blat.proc3829895.chain_2048,blat.proc3829895.chain_2051	4	STRG.17324.1,STRG.17324.3,STRG.17324.4,blat.proc3829895.chain_2044,blat.proc3829895.chain_2047,blat.proc3829895.chain_2049,blat.proc3829895.chain_2050,blat.proc3829895.chain_2052	8
scaffold_9	starts_in_intron	6919079	6919079	-	asmbl_55064	none	blat.proc3829891.chain_3347	1	STRG.11195.1,STRG.11195.2,blat.proc3829891.chain_3348,blat.proc3829891.chain_3349,blat.proc3829891.chain_3350,blat.proc3829891.chain_3351,blat.proc3829891.chain_3352	7
scaffold_11	alt_donor	7668428	7668429	-	asmbl_6771,asmbl_6772	none	STRG.13764.1,STRG.13764.2,Trinity_GG_24733_c1_g1_i1,blat.proc3829893.chain_2246	4	STRG.13764.3	1
scaffold_7	spliced_intron	1387124	1387457	-	asmbl_49531,asmbl_49536,asmbl_49537,asmbl_49538	none	STRG.8638.1,STRG.8638.2,blat.proc3829891.chain_923,blat.proc3829891.chain_924,blat.proc3829891.chain_927	5	blat.proc3829891.chain_921,blat.proc3829891.chain_926	2
scaffold_14	retained_exon	15584767	15584808	+	asmbl_12614	none	STRG.17785.2	1	STRG.17785.1	1
scaffold_3	alt_donor	13899194	13899195	+	asmbl_40424,asmbl_40427	none	STRG.3737.1,blat.proc3829873.chain_144,blat.proc3829873.chain_145	3	STRG.3737.2	1
scaffold_17	retained_exon	6370848	6371633	+	asmbl_17977	none	STRG.20308.1	1	STRG.20308.2	1
scaffold_8	retained_exon	9166680	9166778	-	asmbl_53012,asmbl_53013	none	STRG.10173.1,STRG.10173.3,blat.proc3829891.chain_2227,blat.proc3829891.chain_2228	4	STRG.10173.2,blat.proc3829891.chain_2230	2
scaffold_4	retained_intron	8746286	8746309	+	asmbl_42910	none	blat.proc3829873.chain_1036	1	STRG.4689.1	1
scaffold_3	spliced_intron	795219	795435	+	asmbl_39769	none	STRG.2906.1,blat.proc3829871.chain_3074	2	STRG.2906.2,Trinity_GG_1645_c0_g1_i4,blat.proc3829871.chain_3073,blat.proc3829871.chain_3075	4
scaffold_1	spliced_intron	20135302	20135349	-	asmbl_1174	none	STRG.1381.5	1	STRG.1381.4	1
scaffold_19	starts_in_intron	7582333	7582333	+	asmbl_22279	none	Trinity_GG_12292_c0_g1_i2,blat.proc3829881.chain_3169	2	STRG.22230.3,Trinity_GG_12292_c0_g1_i5,blat.proc3829881.chain_3172	3
scaffold_9	retained_exon	644291	644460	+	asmbl_53762	none	STRG.10785.4	1	STRG.10785.2	1
scaffold_8	retained_exon	12920319	12920440	-	asmbl_53250,asmbl_53251,asmbl_53252,asmbl_53257,asmbl_53258	none	STRG.10471.2,STRG.10471.3,STRG.10471.5,STRG.10471.6,STRG.10471.7,blat.proc3829891.chain_2571,blat.proc3829891.chain_2572,blat.proc3829891.chain_2573	8	STRG.10471.4	1
scaffold_8	alt_acceptor	10484568	10484569	+	asmbl_52159	none	STRG.10277.2,blat.proc3829875.chain_2785	2	blat.proc3829875.chain_2784	1
scaffold_8	retained_exon	11581936	11581992	+	asmbl_52229	none	blat.proc3829875.chain_2770	1	STRG.10355.1,blat.proc3829875.chain_2769,blat.proc3829875.chain_2771	3
scaffold_1	ends_in_intron	4569709	4569709	-	asmbl_214,asmbl_215	none	blat.proc3829887.chain_134,blat.proc3829887.chain_135	2	STRG.277.1,STRG.277.2,STRG.277.3,STRG.277.4,blat.proc3829887.chain_132,blat.proc3829887.chain_133,blat.proc3829887.chain_136,blat.proc3829887.chain_138	8
scaffold_18	alt_donor	8436154	8436155	-	asmbl_20048	none	STRG.21514.3	1	STRG.21514.1,STRG.21514.2,Trinity_GG_29005_c0_g1_i2,blat.proc3829897.chain_2280,blat.proc3829897.chain_2281	5
scaffold_8	retained_exon	14571072	14571162	+	asmbl_52377	none	STRG.10535.2	1	STRG.10535.1,blat.proc3829875.chain_3054,blat.proc3829875.chain_3057	3
scaffold_1	spliced_intron	8643305	8643562	-	asmbl_473,asmbl_474,asmbl_476,asmbl_482,asmbl_483	none	STRG.572.1,STRG.572.2,STRG.572.3,blat.proc3829887.chain_454,blat.proc3829887.chain_456,blat.proc3829887.chain_457,blat.proc3829887.chain_458	7	blat.proc3829887.chain_455	1
scaffold_13	retained_exon	15512103	15512242	+	asmbl_11490,asmbl_11491	none	STRG.16580.1,blat.proc3829879.chain_1334,blat.proc3829879.chain_1335	3	STRG.16580.2	1
scaffold_26	alt_donor	2966247	2966248	-	asmbl_34733,asmbl_34734,asmbl_34737	none	STRG.27973.1,STRG.27973.2,Trinity_GG_32695_c1_g1_i4,blat.proc3829901.chain_1231,blat.proc3829901.chain_1232,blat.proc3829901.chain_1233	6	STRG.27973.3,STRG.27973.4,STRG.27973.5,blat.proc3829901.chain_1235	4
scaffold_20	alt_donor	8760706	8760707	-	asmbl_26933	none	STRG.23410.2	1	STRG.23410.1,blat.proc3829899.chain_461,blat.proc3829899.chain_462	3
scaffold_6	retained_intron	9093568	9093795	+	asmbl_47139	none	STRG.7781.2	1	STRG.7781.1,STRG.7781.3,blat.proc3829875.chain_162	3
scaffold_1	spliced_intron	14304985	14305075	+	asmbl_2354	none	STRG.1018.1,blat.proc3829871.chain_1134	2	blat.proc3829871.chain_1135	1
scaffold_6	spliced_intron	8460271	8460406	+	asmbl_47064	none	STRG.7708.3	1	STRG.7708.1,STRG.7708.4,blat.proc3829875.chain_73	3
scaffold_27	starts_in_intron	3623584	3623584	+	asmbl_36176,asmbl_36178	none	Trinity_GG_15953_c0_g1_i6,blat.proc3829885.chain_1905,blat.proc3829885.chain_1907	3	STRG.28811.1,Trinity_GG_15953_c0_g1_i2,blat.proc3829885.chain_1904	3
scaffold_8	starts_in_intron	12413153	12413153	+	asmbl_52303	none	Trinity_GG_5808_c0_g1_i3,blat.proc3829875.chain_2938	2	STRG.10415.1,STRG.10415.2,Trinity_GG_5808_c0_g1_i2,blat.proc3829875.chain_2937	4
scaffold_5	alternate_exon	18270791	18270871	+	asmbl_44899	none	STRG.6958.1,Trinity_GG_3824_c0_g1_i2,blat.proc3829873.chain_3093	3	STRG.6958.2,Trinity_GG_3824_c0_g1_i1,blat.proc3829873.chain_3094	3
scaffold_13	skipped_exon	6885038	6885978	+	asmbl_10978	none	STRG.15964.3,blat.proc3829879.chain_656	2	STRG.15964.1,STRG.15964.2,blat.proc3829879.chain_655,blat.proc3829879.chain_657	4
scaffold_5	starts_in_intron	12657645	12657645	+	asmbl_44486	none	blat.proc3829873.chain_2575	1	STRG.6495.1,blat.proc3829873.chain_2574,blat.proc3829873.chain_2576,blat.proc3829873.chain_2578,blat.proc3829873.chain_2580	5
scaffold_20	retained_exon	7196574	7197202	+	asmbl_25859	none	STRG.23278.2,blat.proc3829883.chain_407,blat.proc3829883.chain_408	3	STRG.23278.1	1
scaffold_3	starts_in_intron	16991367	16991367	-	asmbl_39475	none	Trinity_GG_19168_c0_g1_i2,blat.proc3829887.chain_3714	2	STRG.3941.1,blat.proc3829887.chain_3713	2
scaffold_14	alt_acceptor	5947846	5947847	-	asmbl_13087	none	STRG.17043.2	1	STRG.17043.1,blat.proc3829895.chain_1719	2
scaffold_25	alternate_exon	7939056	7940539	+	asmbl_33695	none	STRG.27604.1,Trinity_GG_15225_c0_g1_i1,blat.proc3829885.chain_628	3	STRG.27604.2	1
scaffold_10	spliced_intron	3129058	3129956	-	asmbl_3081	none	STRG.12130.1,Trinity_GG_23778_c0_g1_i3,blat.proc3829893.chain_594	3	STRG.12130.2,Trinity_GG_23778_c0_g1_i1,Trinity_GG_23778_c0_g1_i4,blat.proc3829893.chain_592,blat.proc3829893.chain_593	5
scaffold_21	alt_donor	5965984	5965985	+	asmbl_28614	none	STRG.24114.2	1	STRG.24114.1,blat.proc3829883.chain_1260	2
scaffold_2	alt_acceptor	5717665	5717666	+	asmbl_24460,asmbl_24461	none	STRG.1962.1,Trinity_GG_1056_c0_g1_i2,blat.proc3829871.chain_1939	3	STRG.1962.2,STRG.1962.3,blat.proc3829871.chain_1938	3
scaffold_7	alt_donor	18785087	18785088	+	asmbl_51421,asmbl_51422,asmbl_51423,asmbl_51424,asmbl_51425	none	STRG.9691.1,STRG.9691.2,STRG.9691.4,STRG.9691.5,blat.proc3829875.chain_2056	5	STRG.9691.3	1
scaffold_8	skipped_exon	11269758	11270824	-	asmbl_53138	none	STRG.10329.2,blat.proc3829891.chain_2491	2	STRG.10329.1,STRG.10329.3,blat.proc3829891.chain_2492	3
scaffold_4	retained_exon	3441462	3441542	-	asmbl_41186	none	STRG.4270.1,blat.proc3829889.chain_387	2	STRG.4270.2,blat.proc3829889.chain_388	2
scaffold_2	starts_in_intron	862738	862738	+	asmbl_24134	none	STRG.1560.4,blat.proc3829871.chain_1608	2	STRG.1560.1,STRG.1560.2,blat.proc3829871.chain_1607,blat.proc3829871.chain_1609,blat.proc3829871.chain_1611	5
scaffold_27	starts_in_intron	3000234	3000234	+	asmbl_36109	none	Trinity_GG_15918_c0_g1_i4,blat.proc3829885.chain_1846	2	STRG.28767.1,STRG.28767.2,STRG.28767.3,STRG.28767.4,STRG.28767.5,blat.proc3829885.chain_1838,blat.proc3829885.chain_1839,blat.proc3829885.chain_1841,blat.proc3829885.chain_1842,blat.proc3829885.chain_1843,blat.proc3829885.chain_1847,blat.proc3829885.chain_1849	12
scaffold_7	retained_intron	5927708	5928006	+	asmbl_50715	none	blat.proc3829875.chain_1202	1	STRG.8891.1,Trinity_GG_4833_c0_g1_i1,Trinity_GG_4833_c0_g1_i4,blat.proc3829875.chain_1203,blat.proc3829875.chain_1204	5
scaffold_5	retained_intron	15765637	15765727	+	asmbl_44680,asmbl_44681,asmbl_44685	none	blat.proc3829873.chain_2874,blat.proc3829873.chain_2875,blat.proc3829873.chain_2876	3	STRG.6763.1,blat.proc3829873.chain_2877,blat.proc3829873.chain_2880,blat.proc3829873.chain_2882	4
scaffold_24	starts_in_intron	8557706	8557706	+	asmbl_32431	none	blat.proc3829883.chain_3738	1	STRG.26851.1,blat.proc3829883.chain_3739	2
scaffold_11	spliced_intron	12377973	12378067	-	asmbl_7063	none	STRG.14140.1,blat.proc3829893.chain_2458	2	blat.proc3829893.chain_2457	1
scaffold_646	spliced_intron	4980	5090	-	asmbl_49432	none	STRG.30390.1,blat.proc3829901.chain_3441	2	STRG.30390.2,blat.proc3829901.chain_3440	2
scaffold_10	alternate_exon	9061441	9061788	-	asmbl_3575	none	blat.proc3829893.chain_1164	1	STRG.12643.1,blat.proc3829893.chain_1168	2
scaffold_12	alt_acceptor	16401626	16401627	+	asmbl_9134	none	STRG.15385.2,Trinity_GG_8419_c0_g1_i5,blat.proc3829877.chain_3733	3	STRG.15385.3	1
scaffold_17	alternate_exon	4640277	4640412	-	asmbl_18916	none	blat.proc3829897.chain_1087	1	STRG.20183.2,blat.proc3829897.chain_1088	2
scaffold_17	spliced_intron	1128141	1128819	+	asmbl_17721,asmbl_17722	none	STRG.19947.2,blat.proc3829881.chain_783	2	STRG.19947.1,Trinity_GG_10926_c0_g2_i1,blat.proc3829881.chain_780	3
scaffold_15	starts_in_intron	15916352	15916352	+	asmbl_14792,asmbl_14799	none	STRG.18967.3,STRG.18967.4	2	STRG.18967.1,STRG.18967.2	2
scaffold_24	alternate_exon	10132701	10133933	+	asmbl_32546	none	STRG.26962.4	1	STRG.26962.1	1
scaffold_8	alt_donor	12719843	12719844	-	asmbl_53224	none	STRG.10441.1	1	STRG.10441.2,blat.proc3829891.chain_2550	2
scaffold_10	retained_intron	6071958	6072084	-	asmbl_3342,asmbl_3346,asmbl_3350	none	STRG.12437.5,blat.proc3829893.chain_921,blat.proc3829893.chain_923	3	STRG.12437.1,STRG.12437.2,STRG.12437.3,blat.proc3829893.chain_918,blat.proc3829893.chain_919,blat.proc3829893.chain_920,blat.proc3829893.chain_922,blat.proc3829893.chain_924	8
scaffold_1	ends_in_intron	5124891	5124891	+	asmbl_1694	none	Trinity_GG_216_c0_g1_i2,blat.proc3829871.chain_362	2	STRG.313.1,Trinity_GG_216_c0_g1_i1,blat.proc3829871.chain_361	3
scaffold_16	spliced_intron	14512399	14512482	-	asmbl_16628,asmbl_16629,asmbl_16631	none	STRG.19819.1,blat.proc3829897.chain_770,blat.proc3829897.chain_771,blat.proc3829897.chain_774	4	blat.proc3829897.chain_772	1
scaffold_13	retained_exon	6884888	6885037	+	asmbl_10978,asmbl_10980	none	STRG.15964.1,STRG.15964.3,blat.proc3829879.chain_655,blat.proc3829879.chain_656	4	STRG.15964.2,blat.proc3829879.chain_657	2
scaffold_17	retained_exon	12199388	12199478	+	asmbl_18402	none	STRG.20743.3,blat.proc3829881.chain_1576	2	STRG.20743.2	1
scaffold_16	retained_intron	125457	125887	+	asmbl_16786	none	STRG.18995.2,Trinity_GG_10419_c0_g1_i2,blat.proc3829879.chain_3619	3	Trinity_GG_10419_c0_g1_i5,blat.proc3829879.chain_3617	2
scaffold_4	alt_donor	13825472	13825473	-	asmbl_41756,asmbl_41757	none	STRG.5009.1,STRG.5009.2,blat.proc3829889.chain_1059,blat.proc3829889.chain_1060	4	STRG.5009.3	1
scaffold_7	retained_intron	12053958	12054062	+	asmbl_51087	none	blat.proc3829875.chain_1755	1	STRG.9298.2,Trinity_GG_5159_c0_g1_i4,blat.proc3829875.chain_1757	3
scaffold_1	alternate_exon	12110966	12111686	+	asmbl_2160	none	STRG.824.1,blat.proc3829871.chain_849	2	STRG.824.2,Trinity_GG_480_c0_g1_i1,blat.proc3829871.chain_847,blat.proc3829871.chain_850,blat.proc3829871.chain_851	5
scaffold_21	alt_donor	1054548	1054549	-	asmbl_27400,asmbl_27405,asmbl_27408	none	STRG.23776.2,STRG.23776.3,Trinity_GG_30261_c0_g1_i11,blat.proc3829899.chain_850	4	STRG.23776.1,Trinity_GG_30261_c0_g1_i4,blat.proc3829899.chain_852	3
scaffold_2	alt_acceptor	2543448	2543449	-	asmbl_22926	none	STRG.1696.3	1	STRG.1696.1,STRG.1696.2,blat.proc3829887.chain_1538,blat.proc3829887.chain_1540	4
scaffold_11	ends_in_intron	11942444	11942444	-	asmbl_7029	none	STRG.14160.6	1	STRG.14160.1,STRG.14160.2,STRG.14160.3,STRG.14160.4,STRG.14160.5	5
scaffold_7	starts_in_intron	9861521	9861521	-	asmbl_49907	none	blat.proc3829891.chain_1418	1	STRG.9178.1,STRG.9178.3,STRG.9178.4,blat.proc3829891.chain_1416,blat.proc3829891.chain_1417,blat.proc3829891.chain_1419	6
scaffold_5	spliced_intron	18255418	18255824	+	asmbl_44886,asmbl_44889	none	STRG.6952.1,Trinity_GG_3839_c0_g1_i2,Trinity_GG_3839_c0_g1_i4,blat.proc3829873.chain_3127,blat.proc3829873.chain_3129	5	blat.proc3829873.chain_3128	1
scaffold_15	retained_intron	4232365	4232536	+	asmbl_14073,asmbl_14076	none	blat.proc3829879.chain_2809,blat.proc3829879.chain_2814	2	STRG.18160.1,STRG.18160.2,blat.proc3829879.chain_2806,blat.proc3829879.chain_2808,blat.proc3829879.chain_2810,blat.proc3829879.chain_2811,blat.proc3829879.chain_2813	7
scaffold_20	retained_intron	11438436	11438575	+	asmbl_26201	none	STRG.23635.1,blat.proc3829883.chain_777	2	STRG.23635.2,STRG.23635.3,blat.proc3829883.chain_776,blat.proc3829883.chain_778	4
scaffold_2	alt_acceptor	20310005	20310006	+	asmbl_25353	none	STRG.2874.1,blat.proc3829871.chain_3044	2	STRG.2874.3	1
scaffold_5	starts_in_intron	10308810	10308810	+	asmbl_44342	none	blat.proc3829873.chain_2477	1	STRG.6320.1,blat.proc3829873.chain_2475,blat.proc3829873.chain_2476	3
scaffold_19	starts_in_intron	13368726	13368726	+	asmbl_22681	none	Trinity_GG_12516_c0_g1_i1,blat.proc3829881.chain_3597	2	STRG.22643.1,Trinity_GG_12516_c0_g1_i2,blat.proc3829881.chain_3598	3
scaffold_14	retained_exon	7565593	7565729	-	asmbl_13212	none	STRG.17187.2	1	STRG.17187.1,blat.proc3829895.chain_1875	2
scaffold_13	alternate_exon	11380238	11381632	-	asmbl_10048	none	STRG.16287.4,Trinity_GG_26140_c0_g1_i8	2	STRG.16287.2,STRG.16287.3,STRG.16287.5,STRG.16287.7,Trinity_GG_26140_c0_g1_i1,Trinity_GG_26140_c0_g1_i3,Trinity_GG_26140_c0_g1_i4,Trinity_GG_26140_c0_g1_i5,Trinity_GG_26140_c0_g1_i7,blat.proc3829895.chain_1024,blat.proc3829895.chain_1026,blat.proc3829895.chain_1028,blat.proc3829895.chain_1030,blat.proc3829895.chain_1033	14
scaffold_14	ends_in_intron	10530660	10530660	+	asmbl_12312	none	STRG.17393.1	1	blat.proc3829879.chain_2098	1
scaffold_87	alt_donor	8939	8940	+	asmbl_53705	none	blat.proc3829901.chain_3215	1	STRG.30139.3,STRG.30139.5,STRG.30139.6,Trinity_GG_18556_c0_g1_i1	4
scaffold_13	skipped_exon	9558041	9558424	+	asmbl_11196	none	STRG.16205.2,blat.proc3829879.chain_946	2	STRG.16205.1,blat.proc3829879.chain_947	2
scaffold_16	spliced_intron	125457	125887	+	asmbl_16788	none	Trinity_GG_10419_c0_g1_i5,blat.proc3829879.chain_3617	2	STRG.18995.2,Trinity_GG_10419_c0_g1_i2,blat.proc3829879.chain_3619	3
scaffold_27	starts_in_intron	636647	636647	-	asmbl_36663	none	blat.proc3829901.chain_1759	1	STRG.28565.1,blat.proc3829901.chain_1758	2
scaffold_14	skipped_exon	4112821	4113937	-	asmbl_13015	none	STRG.16950.1,Trinity_GG_26483_c0_g1_i1,blat.proc3829895.chain_1613	3	STRG.16950.2,Trinity_GG_26483_c0_g1_i2,blat.proc3829895.chain_1612	3
scaffold_24	retained_intron	3655857	3656169	+	asmbl_32162	none	STRG.26528.5,Trinity_GG_14654_c0_g1_i1,blat.proc3829883.chain_3409	3	STRG.26528.3,Trinity_GG_14654_c0_g1_i10,blat.proc3829883.chain_3403	3
scaffold_1	retained_intron	13059558	13059577	-	asmbl_794	none	STRG.940.1,blat.proc3829887.chain_832	2	STRG.940.2	1
scaffold_20	retained_intron	10787428	10787609	+	asmbl_26145,asmbl_26146,asmbl_26147	none	STRG.23592.1,STRG.23592.2,Trinity_GG_13065_c0_g1_i2,blat.proc3829883.chain_740,blat.proc3829883.chain_743	5	STRG.23592.3,blat.proc3829883.chain_742	2
scaffold_16	spliced_intron	8663515	8663601	-	asmbl_16427	none	STRG.19481.1	1	STRG.19481.2	1
scaffold_23	starts_in_intron	2325649	2325649	+	asmbl_30695	none	Trinity_GG_14178_c0_g1_i1,Trinity_GG_16816_c0_g1_i2	2	STRG.25684.1,STRG.25684.2	2
scaffold_7	retained_intron	1235897	1237961	+	asmbl_50468,asmbl_50480	none	STRG.8627.5,STRG.8627.6,Trinity_GG_4740_c0_g1_i13,Trinity_GG_4740_c0_g1_i14,Trinity_GG_4740_c1_g1_i1,blat.proc3829875.chain_1044,blat.proc3829875.chain_1045,blat.proc3829875.chain_1048	8	STRG.8627.8	1
scaffold_27	alternate_exon	2820671	2821233	+	asmbl_36075,asmbl_36080,asmbl_36082	none	STRG.28742.2,STRG.28742.3,blat.proc3829885.chain_1802,blat.proc3829885.chain_1803	4	STRG.28742.1,blat.proc3829885.chain_1799,blat.proc3829885.chain_1801	3
scaffold_17	ends_in_intron	538004	538004	+	asmbl_17677	none	blat.proc3829881.chain_744	1	STRG.19892.1,STRG.19892.2,STRG.19892.3,STRG.19892.4,blat.proc3829881.chain_739,blat.proc3829881.chain_740,blat.proc3829881.chain_742,blat.proc3829881.chain_743	8
scaffold_4	retained_intron	13416104	13416213	+	asmbl_43123,asmbl_43124	none	blat.proc3829873.chain_1257,blat.proc3829873.chain_1258	2	STRG.4972.1,STRG.4972.2,blat.proc3829873.chain_1259,blat.proc3829873.chain_1260	4
scaffold_6	ends_in_intron	8583633	8583633	+	asmbl_47092	none	Trinity_GG_4242_c0_g1_i3,blat.proc3829875.chain_95	2	STRG.7733.1,STRG.7733.2,blat.proc3829875.chain_99	3
scaffold_6	spliced_intron	12992093	12992335	-	asmbl_48792,asmbl_48797	none	STRG.8061.3,STRG.8061.4,blat.proc3829891.chain_264,blat.proc3829891.chain_275	4	STRG.8061.2,blat.proc3829891.chain_262,blat.proc3829891.chain_263,blat.proc3829891.chain_271	4
scaffold_25	alt_acceptor	5567360	5567361	-	asmbl_34243	none	STRG.27439.2,Trinity_GG_32384_c0_g1_i1,blat.proc3829901.chain_739	3	STRG.27439.1,Trinity_GG_32384_c0_g1_i2,blat.proc3829901.chain_738	3
scaffold_18	starts_in_intron	5986010	5986010	+	asmbl_20670	none	Trinity_GG_11733_c3_g1_i1,blat.proc3829881.chain_2203	2	blat.proc3829881.chain_2204,blat.proc3829881.chain_2205,blat.proc3829881.chain_2206,blat.proc3829881.chain_2207,blat.proc3829881.chain_2208,blat.proc3829881.chain_2209,blat.proc3829881.chain_2211,blat.proc3829881.chain_2212	8
scaffold_14	starts_in_intron	13612553	13612553	+	asmbl_12477	none	blat.proc3829879.chain_2276	1	STRG.17634.1,blat.proc3829879.chain_2277	2
scaffold_14	retained_exon	151717	151802	-	asmbl_12761,asmbl_12765	none	STRG.16700.5,blat.proc3829895.chain_1383	2	STRG.16700.2,STRG.16700.3,Trinity_GG_26353_c0_g1_i4,blat.proc3829895.chain_1384,blat.proc3829895.chain_1385,blat.proc3829895.chain_1386	6
scaffold_4	alternate_exon	16804027	16804247	-	asmbl_41967	none	blat.proc3829889.chain_1241	1	Trinity_GG_19912_c0_g1_i4,blat.proc3829889.chain_1243	2
scaffold_1	retained_intron	12754534	12756067	+	asmbl_2237	none	STRG.893.1,Trinity_GG_528_c0_g1_i3,blat.proc3829871.chain_952	3	STRG.893.3,Trinity_GG_528_c0_g1_i1,blat.proc3829871.chain_951	3
scaffold_15	starts_in_intron	15436352	15436352	-	asmbl_15797,asmbl_15800	none	STRG.18920.1,blat.proc3829895.chain_3631,blat.proc3829895.chain_3632	3	STRG.18920.2,STRG.18920.3,blat.proc3829895.chain_3630,blat.proc3829895.chain_3633,blat.proc3829895.chain_3635	5
scaffold_27	ends_in_intron	4759100	4759100	+	asmbl_36274	none	Trinity_GG_16015_c2_g1_i1,blat.proc3829885.chain_2050	2	STRG.28893.1,Trinity_GG_16015_c2_g1_i2,blat.proc3829885.chain_2049	3
scaffold_6	spliced_intron	42979	43126	-	asmbl_47959	none	STRG.7054.1	1	STRG.7054.2	1
scaffold_3	spliced_intron	15741539	15741648	-	asmbl_39387,asmbl_39389	none	STRG.3850.1,blat.proc3829887.chain_3580,blat.proc3829887.chain_3581	3	blat.proc3829887.chain_3578,blat.proc3829887.chain_3579	2
scaffold_3	starts_in_intron	17530821	17530821	+	asmbl_40648	none	Trinity_GG_2207_c0_g1_i2,blat.proc3829873.chain_336	2	STRG.3982.1,STRG.3982.2,blat.proc3829873.chain_337	3
scaffold_22	alt_donor	6155300	6155301	-	asmbl_30079,asmbl_30083	none	STRG.24952.1,blat.proc3829899.chain_2022,blat.proc3829899.chain_2023	3	STRG.24952.2,STRG.24952.3,blat.proc3829899.chain_2024	3
scaffold_1	alternate_exon	20452066	20452127	+	asmbl_2621	none	STRG.1392.1,Trinity_GG_808_c0_g1_i3,blat.proc3829871.chain_1424	3	STRG.1392.2	1
scaffold_1	retained_exon	16096473	16096565	-	asmbl_979	none	blat.proc3829887.chain_1024	1	STRG.1128.1,STRG.1128.2,blat.proc3829887.chain_1023,blat.proc3829887.chain_1025,blat.proc3829887.chain_1026	5
scaffold_8	alt_donor	11782846	11782847	-	asmbl_53166	none	STRG.10373.2	1	STRG.10373.1,blat.proc3829891.chain_2496,blat.proc3829891.chain_2497	3
scaffold_22	retained_intron	5923249	5923359	+	asmbl_29362,asmbl_29363	none	STRG.24922.2,Trinity_GG_13792_c0_g1_i3,blat.proc3829883.chain_1978,blat.proc3829883.chain_1979	4	STRG.24922.1,Trinity_GG_13792_c0_g1_i1,blat.proc3829883.chain_1977	3
scaffold_14	retained_exon	1590521	1590858	-	asmbl_12878	none	STRG.16786.5	1	STRG.16786.1,STRG.16786.2,STRG.16786.3,STRG.16786.4,blat.proc3829895.chain_1442,blat.proc3829895.chain_1443,blat.proc3829895.chain_1444	7
scaffold_18	retained_intron	7631535	7631669	-	asmbl_19996,asmbl_19999	none	STRG.21453.1,STRG.21453.5,blat.proc3829897.chain_2308,blat.proc3829897.chain_2309	4	STRG.21453.2,blat.proc3829897.chain_2310,blat.proc3829897.chain_2312,blat.proc3829897.chain_2314	4
scaffold_5	spliced_intron	7320374	7320425	+	asmbl_44155	none	Trinity_GG_3345_c0_g2_i1	1	STRG.6121.1,blat.proc3829873.chain_2277	2
scaffold_23	alternate_exon	6332800	6334736	+	asmbl_30907	none	STRG.25966.3,blat.proc3829883.chain_2837	2	blat.proc3829883.chain_2839	1
scaffold_12	alternate_exon	2661590	2662179	+	asmbl_8472	none	blat.proc3829877.chain_2972	1	blat.proc3829877.chain_2968	1
scaffold_20	starts_in_intron	10785729	10785729	+	asmbl_26145	none	Trinity_GG_13065_c0_g1_i3,blat.proc3829883.chain_741	2	STRG.23592.1,STRG.23592.2,STRG.23592.3,blat.proc3829883.chain_740	4
scaffold_25	ends_in_intron	666155	666155	+	asmbl_33339	none	blat.proc3829885.chain_211	1	STRG.27104.1,STRG.27104.2	2
scaffold_1	alt_acceptor	13884637	13884638	-	asmbl_863	none	STRG.993.4	1	STRG.993.2,blat.proc3829887.chain_868	2
scaffold_14	retained_intron	13897375	13897829	+	asmbl_12501	none	blat.proc3829879.chain_2353	1	STRG.17653.3,STRG.17653.5	2
scaffold_10	alt_donor	9555581	9555582	+	asmbl_4680	none	STRG.12692.1	1	STRG.12692.2,STRG.12692.4,blat.proc3829877.chain_1283	3
scaffold_19	starts_in_intron	12973356	12973356	-	asmbl_21788,asmbl_21789	none	blat.proc3829897.chain_3322,blat.proc3829897.chain_3323	2	STRG.22606.1,STRG.22606.2,STRG.22606.3,STRG.22606.4,STRG.22606.5,Trinity_GG_29578_c0_g1_i1,Trinity_GG_29578_c0_g1_i2,Trinity_GG_29578_c0_g1_i6,Trinity_GG_29578_c0_g1_i8,blat.proc3829897.chain_3318,blat.proc3829897.chain_3320,blat.proc3829897.chain_3324,blat.proc3829897.chain_3325	13
scaffold_21	skipped_exon	3824094	3826309	-	asmbl_27573,asmbl_27578	none	STRG.23959.1,blat.proc3829899.chain_1042,blat.proc3829899.chain_1043	3	STRG.23959.3,blat.proc3829899.chain_1044,blat.proc3829899.chain_1046	3
scaffold_17	alt_acceptor	3434638	3434639	-	asmbl_18862	none	STRG.20111.2	1	STRG.20111.1	1
scaffold_1	alternate_exon	974814	975209	-	asmbl_39	none	STRG.57.2	1	STRG.57.1,Trinity_GG_17049_c1_g1_i2,blat.proc3829885.chain_3720,blat.proc3829885.chain_3721	4
scaffold_27	starts_in_intron	6603040	6603040	-	asmbl_37022	none	Trinity_GG_33272_c0_g1_i3	1	STRG.29010.1,blat.proc3829901.chain_2177	2
scaffold_5	starts_in_intron	13803402	13803402	-	asmbl_45939	none	blat.proc3829889.chain_2656	1	STRG.6592.2,blat.proc3829889.chain_2652,blat.proc3829889.chain_2655	3
scaffold_18	alt_donor	7641373	7641374	-	asmbl_19994,asmbl_19996,asmbl_20000	none	STRG.21453.1,STRG.21453.2,Trinity_GG_29021_c0_g1_i10,blat.proc3829897.chain_2309,blat.proc3829897.chain_2313,blat.proc3829897.chain_2314	6	STRG.21453.3,STRG.21453.4,STRG.21453.5,Trinity_GG_29021_c0_g1_i8,blat.proc3829897.chain_2308,blat.proc3829897.chain_2310,blat.proc3829897.chain_2311	7
scaffold_6	alt_donor	11483453	11483454	+	asmbl_47269	none	STRG.7936.4	1	STRG.7936.1,STRG.7936.2,STRG.7936.3,blat.proc3829875.chain_299,blat.proc3829875.chain_300,blat.proc3829875.chain_301,blat.proc3829875.chain_302,blat.proc3829875.chain_304	8
scaffold_14	spliced_intron	11676922	11677256	-	asmbl_13504	none	STRG.17497.2,blat.proc3829895.chain_2194	2	STRG.17497.3,blat.proc3829895.chain_2193	2
scaffold_23	alt_donor	5340316	5340317	-	asmbl_31626,asmbl_31627	none	STRG.25890.1,Trinity_GG_31478_c0_g1_i4,Trinity_GG_31478_c0_g1_i6,blat.proc3829899.chain_2980,blat.proc3829899.chain_2981	5	STRG.25890.3	1
scaffold_9	alt_acceptor	4952566	4952567	-	asmbl_54942	none	STRG.11061.1,blat.proc3829891.chain_3213	2	STRG.11061.3,Trinity_GG_23150_c0_g1_i3	2
scaffold_3	alt_donor	13419404	13419405	-	asmbl_39215,asmbl_39217	none	STRG.3690.2,STRG.3690.5	2	STRG.3690.4	1
scaffold_3	retained_exon	6189135	6189526	-	asmbl_38865	none	blat.proc3829887.chain_3012	1	STRG.3262.3,blat.proc3829887.chain_3014	2
scaffold_25	starts_in_intron	4570407	4570407	+	asmbl_33516,asmbl_33517,asmbl_33519,asmbl_33520,asmbl_33521	none	STRG.27377.2,STRG.27377.3,Trinity_GG_15111_c0_g1_i12,Trinity_GG_15111_c0_g1_i3,Trinity_GG_15111_c0_g1_i4,Trinity_GG_15111_c0_g1_i9,blat.proc3829885.chain_437,blat.proc3829885.chain_438,blat.proc3829885.chain_439,blat.proc3829885.chain_440	10	STRG.27377.1	1
scaffold_14	alt_acceptor	8294655	8294656	-	asmbl_13266	none	blat.proc3829895.chain_1939	1	STRG.17236.1,blat.proc3829895.chain_1940,blat.proc3829895.chain_1941	3
scaffold_4	spliced_intron	3383632	3383773	+	asmbl_42514,asmbl_42515,asmbl_42518	none	STRG.4269.1,STRG.4269.2,blat.proc3829873.chain_584,blat.proc3829873.chain_586,blat.proc3829873.chain_587	5	STRG.4269.3,blat.proc3829873.chain_585	2
scaffold_2	starts_in_intron	6086832	6086832	-	asmbl_23205	none	blat.proc3829887.chain_1836	1	STRG.1980.3,Trinity_GG_18112_c0_g1_i5,blat.proc3829887.chain_1840	3
scaffold_3	starts_in_intron	1546397	1546397	+	asmbl_39813	none	STRG.2986.3,blat.proc3829871.chain_3097,blat.proc3829871.chain_3098	3	STRG.2986.2,blat.proc3829871.chain_3100	2
scaffold_23	alt_donor	4449914	4449915	-	asmbl_31588	none	STRG.25842.3,Trinity_GG_31473_c0_g1_i1,blat.proc3829899.chain_2970	3	STRG.25842.1,STRG.25842.2,Trinity_GG_31473_c0_g1_i4,blat.proc3829899.chain_2971	4
scaffold_13	alt_donor	10435521	10435522	+	asmbl_11222,asmbl_11224	none	STRG.16236.1,STRG.16236.2,blat.proc3829879.chain_969,blat.proc3829879.chain_970	4	STRG.16236.3,STRG.16236.4,blat.proc3829879.chain_971	3
scaffold_7	alt_acceptor	18360629	18360630	-	asmbl_50284,asmbl_50285	none	STRG.9654.1,STRG.9654.2	2	blat.proc3829891.chain_1905,blat.proc3829891.chain_1906	2
scaffold_16	starts_in_intron	8090626	8090626	-	asmbl_16405	none	blat.proc3829897.chain_449	1	STRG.19441.1,blat.proc3829897.chain_446,blat.proc3829897.chain_447	3
scaffold_27	starts_in_intron	1947593	1947593	+	asmbl_36003	none	Trinity_GG_15861_c1_g1_i2,blat.proc3829885.chain_1685	2	STRG.28655.1,blat.proc3829885.chain_1688	2
scaffold_21	spliced_intron	524687	524895	+	asmbl_28293	none	STRG.23731.1,blat.proc3829883.chain_857	2	Trinity_GG_13127_c0_g1_i1,blat.proc3829883.chain_856	2
scaffold_5	alt_donor	6004105	6004106	-	asmbl_45463	none	STRG.6009.1,blat.proc3829889.chain_2100	2	blat.proc3829889.chain_2099	1
scaffold_6	retained_intron	13988163	13988265	-	asmbl_48905,asmbl_48911	none	STRG.8147.1,blat.proc3829891.chain_453,blat.proc3829891.chain_458	3	blat.proc3829891.chain_452	1
scaffold_15	retained_intron	4231185	4231387	+	asmbl_14069	none	Trinity_GG_9974_c0_g1_i8,blat.proc3829879.chain_2807	2	STRG.18160.2,blat.proc3829879.chain_2806,blat.proc3829879.chain_2808	3
scaffold_7	starts_in_intron	5234726	5234726	+	asmbl_50681	none	STRG.8853.2,Trinity_GG_4884_c1_g1_i1,blat.proc3829875.chain_1297	3	STRG.8853.1,blat.proc3829875.chain_1294,blat.proc3829875.chain_1296	3
scaffold_4	alt_acceptor	19337178	19337179	-	asmbl_42177	none	STRG.5513.1	1	STRG.5513.2,blat.proc3829889.chain_1519	2
scaffold_17	starts_in_intron	5694101	5694101	+	asmbl_17955	none	STRG.20260.4	1	STRG.20260.1,STRG.20260.3,Trinity_GG_11101_c0_g1_i2,blat.proc3829881.chain_1063,blat.proc3829881.chain_1065	5
scaffold_20	spliced_intron	11597678	11597826	-	asmbl_27092,asmbl_27096	none	STRG.23657.2,STRG.23657.3	2	STRG.23657.1	1
scaffold_5	retained_intron	17226676	17226936	+	asmbl_44808,asmbl_44814	none	STRG.6887.3,Trinity_GG_3788_c0_g1_i1,blat.proc3829873.chain_3029,blat.proc3829873.chain_3032	4	STRG.6887.1,STRG.6887.2,blat.proc3829873.chain_3028,blat.proc3829873.chain_3030,blat.proc3829873.chain_3031,blat.proc3829873.chain_3033	6
scaffold_10	retained_exon	7797564	7797608	-	asmbl_3471,asmbl_3472	none	STRG.12559.1,STRG.12559.2,blat.proc3829893.chain_1039,blat.proc3829893.chain_1040	4	STRG.12559.3	1
scaffold_6	skipped_exon	18916513	18917076	-	asmbl_49222,asmbl_49223	none	STRG.8553.2,STRG.8553.3,blat.proc3829891.chain_869,blat.proc3829891.chain_870	4	STRG.8553.1	1
scaffold_7	alt_acceptor	8077836	8077837	-	asmbl_49796	none	STRG.9036.1,blat.proc3829891.chain_1309	2	STRG.9036.2	1
scaffold_18	alternate_exon	1512505	1512721	+	asmbl_20385	none	STRG.21033.2	1	STRG.21033.4	1
scaffold_16	starts_in_intron	7098141	7098141	+	asmbl_17122	none	blat.proc3829881.chain_266	1	STRG.19367.1,STRG.19367.2,blat.proc3829881.chain_264,blat.proc3829881.chain_265	4
scaffold_26	alt_donor	665243	665244	-	asmbl_34665	none	STRG.27844.2	1	STRG.27844.1	1
scaffold_8	starts_in_intron	16279565	16279565	-	asmbl_53387	none	STRG.10612.4	1	STRG.10612.1,STRG.10612.2,blat.proc3829891.chain_2750	3
scaffold_18	retained_intron	13150111	13150230	-	asmbl_20194	none	STRG.21746.2	1	STRG.21746.1	1
scaffold_5	spliced_intron	10804890	10804988	+	asmbl_44359,asmbl_44360,asmbl_44362,asmbl_44363	none	STRG.6347.1,STRG.6347.2,blat.proc3829873.chain_2486,blat.proc3829873.chain_2487,blat.proc3829873.chain_2490	5	blat.proc3829873.chain_2489	1
scaffold_9	retained_intron	14817657	14818073	-	asmbl_55459,asmbl_55466	none	STRG.11693.2,Trinity_GG_23432_c0_g1_i6,blat.proc3829893.chain_9	3	STRG.11693.1,STRG.11693.4,blat.proc3829893.chain_10,blat.proc3829893.chain_7,blat.proc3829893.chain_8	5
scaffold_25	alt_donor	5153947	5153948	-	asmbl_34223	none	STRG.27418.1,Trinity_GG_32376_c0_g1_i2,blat.proc3829901.chain_729	3	STRG.27418.2,Trinity_GG_32376_c0_g1_i1,blat.proc3829901.chain_728	3
scaffold_15	starts_in_intron	184012	184012	+	asmbl_13894	none	Trinity_GG_9834_c0_g1_i4	1	STRG.17862.1,STRG.17862.2	2
scaffold_6	retained_exon	17886316	17886665	+	asmbl_47736,asmbl_47737,asmbl_47739	none	STRG.8475.2,STRG.8475.3,Trinity_GG_4642_c0_g1_i1,Trinity_GG_4642_c0_g1_i2,Trinity_GG_4642_c0_g1_i4,blat.proc3829875.chain_827,blat.proc3829875.chain_830,blat.proc3829875.chain_832	8	STRG.8475.1,Trinity_GG_4642_c0_g1_i5,blat.proc3829875.chain_828	3
scaffold_3	alt_acceptor	9582337	9582338	-	asmbl_39011	none	STRG.3431.2	1	STRG.3431.1,blat.proc3829887.chain_3209	2
scaffold_4	retained_intron	16582373	16582576	+	asmbl_43319	none	Trinity_GG_2906_c0_g1_i2,blat.proc3829873.chain_1518	2	STRG.5234.1,Trinity_GG_2906_c0_g1_i1,blat.proc3829873.chain_1519	3
scaffold_3	starts_in_intron	4770154	4770154	-	asmbl_38773	none	Trinity_GG_18707_c0_g1_i1	1	STRG.3175.1,blat.proc3829887.chain_2875	2
scaffold_2	retained_exon	2455317	2455394	-	asmbl_22920	none	STRG.1690.1,blat.proc3829887.chain_1531	2	STRG.1690.2,blat.proc3829887.chain_1528	2
scaffold_1	starts_in_intron	5964343	5964343	+	asmbl_1800	none	Trinity_GG_257_c0_g1_i1,blat.proc3829871.chain_455	2	STRG.396.1,STRG.396.2,STRG.396.3,blat.proc3829871.chain_454	4
scaffold_14	retained_intron	399142	399371	+	asmbl_11722	none	STRG.16722.3	1	STRG.16722.2,STRG.16722.5	2
scaffold_3	alt_donor	17456078	17456079	+	asmbl_40640,asmbl_40641	none	STRG.3976.1,STRG.3976.3,Trinity_GG_2205_c0_g1_i1,Trinity_GG_2205_c0_g1_i3,blat.proc3829873.chain_332,blat.proc3829873.chain_333	6	STRG.3976.4	1
scaffold_17	alternate_exon	10049359	10050034	+	asmbl_18289	none	blat.proc3829881.chain_1429	1	STRG.20609.1,STRG.20609.2,blat.proc3829881.chain_1431,blat.proc3829881.chain_1432	4
scaffold_14	ends_in_intron	8400735	8400735	-	asmbl_13287	none	Trinity_GG_26707_c0_g1_i3,blat.proc3829895.chain_1983	2	STRG.17262.1,STRG.17262.3,blat.proc3829895.chain_1982	3
scaffold_369	retained_intron	1752	1811	+	asmbl_41007	none	STRG.30276.1	1	STRG.30276.2	1
scaffold_15	retained_intron	10633902	10633978	+	asmbl_14402,asmbl_14403	none	STRG.18539.1,STRG.18539.3,blat.proc3829879.chain_3112,blat.proc3829879.chain_3113	4	STRG.18539.2	1
scaffold_22	retained_intron	485089	485440	+	asmbl_29151	none	blat.proc3829883.chain_1727	1	STRG.24679.1,blat.proc3829883.chain_1725	2
scaffold_5	starts_in_intron	4868726	4868726	+	asmbl_43978	none	blat.proc3829873.chain_2102	1	STRG.5939.1,blat.proc3829873.chain_2103	2
scaffold_6	retained_intron	8922099	8922181	-	asmbl_48535	none	STRG.7762.1,Trinity_GG_21405_c0_g1_i2,blat.proc3829891.chain_33	3	blat.proc3829891.chain_34	1
scaffold_1	retained_intron	20339758	20340702	+	asmbl_2602,asmbl_2604,asmbl_2605,asmbl_2608,asmbl_2615	none	STRG.1398.2,STRG.1398.3,STRG.1398.6,Trinity_GG_815_c2_g1_i8,blat.proc3829871.chain_1445,blat.proc3829871.chain_1446,blat.proc3829871.chain_1450	7	blat.proc3829871.chain_1453	1
scaffold_7	alt_acceptor	7684366	7684367	-	asmbl_49781	none	STRG.9010.1,blat.proc3829891.chain_1284	2	STRG.9010.2,blat.proc3829891.chain_1285	2
scaffold_26	spliced_intron	4678864	4679059	-	asmbl_34858	none	STRG.28174.2	1	STRG.28174.1	1
scaffold_20	retained_intron	10468860	10469189	-	asmbl_27026	none	STRG.23572.2,blat.proc3829899.chain_580	2	STRG.23572.1,blat.proc3829899.chain_579,blat.proc3829899.chain_582	3
scaffold_1	alt_donor	12941538	12941539	+	asmbl_2267	none	STRG.924.2	1	STRG.924.1,blat.proc3829871.chain_1016	2
scaffold_1	spliced_intron	9516100	9516390	-	asmbl_547	none	STRG.644.2,blat.proc3829887.chain_519	2	STRG.644.3,blat.proc3829887.chain_520,blat.proc3829887.chain_521	3
scaffold_9	alt_acceptor	67094	67095	+	asmbl_53727	none	blat.proc3829875.chain_3247	1	STRG.10758.1,STRG.10758.2	2
scaffold_12	retained_intron	10584344	10584440	+	asmbl_8906	none	Trinity_GG_8268_c0_g1_i1	1	STRG.15014.1	1
scaffold_22	alternate_exon	1005521	1005779	+	asmbl_29207	none	STRG.24742.1,Trinity_GG_13691_c0_g1_i6,blat.proc3829883.chain_1811	3	STRG.24742.2,STRG.24742.3,Trinity_GG_13691_c0_g1_i10,blat.proc3829883.chain_1807,blat.proc3829883.chain_1808,blat.proc3829883.chain_1810,blat.proc3829883.chain_1812	7
scaffold_18	alternate_exon	12935164	12935358	+	asmbl_21004	none	blat.proc3829897.chain_2535	1	STRG.21731.3	1
scaffold_17	alternate_exon	8221146	8221393	+	asmbl_18084	none	STRG.20435.3	1	STRG.20435.1,STRG.20435.2,blat.proc3829881.chain_1196,blat.proc3829881.chain_1198,blat.proc3829881.chain_1200	5
scaffold_8	retained_exon	11463927	11463996	+	asmbl_52214	none	STRG.10344.2,Trinity_GG_5769_c0_g1_i1,blat.proc3829875.chain_2872	3	STRG.10344.1	1
scaffold_5	starts_in_intron	18179594	18179594	+	asmbl_44870,asmbl_44871	none	Trinity_GG_3801_c1_g1_i2,Trinity_GG_3801_c1_g1_i3,blat.proc3829873.chain_3057,blat.proc3829873.chain_3059	4	STRG.6948.1,STRG.6948.2,STRG.6948.3,Trinity_GG_3801_c1_g1_i4,blat.proc3829873.chain_3058	5
scaffold_24	alt_acceptor	7173009	7173010	-	asmbl_33005,asmbl_33006,asmbl_33007	none	STRG.26749.2,blat.proc3829901.chain_4,blat.proc3829901.chain_5	3	STRG.26749.1	1
scaffold_12	retained_intron	7422596	7422854	-	asmbl_7715,asmbl_7716	none	blat.proc3829893.chain_3198,blat.proc3829893.chain_3201	2	STRG.14807.1,blat.proc3829893.chain_3200	2
scaffold_7	alt_acceptor	6641990	6641991	-	asmbl_49739	none	STRG.8926.1,blat.proc3829891.chain_1242	2	STRG.8926.2	1
scaffold_23	alt_donor	5870425	5870426	-	asmbl_31675	none	STRG.25951.1,blat.proc3829899.chain_3067	2	STRG.25951.2,blat.proc3829899.chain_3066	2
scaffold_16	starts_in_intron	8072943	8072943	-	asmbl_16403	none	Trinity_GG_27939_c1_g1_i1	1	STRG.19439.1,Trinity_GG_27939_c0_g1_i1,Trinity_GG_27939_c0_g1_i2,blat.proc3829897.chain_495	4
scaffold_1	alt_acceptor	19006591	19006592	+	asmbl_2561	none	STRG.1322.3	1	STRG.1322.1	1
scaffold_5	alternate_exon	9105759	9105949	+	asmbl_44276	none	STRG.6245.1	1	STRG.6245.2	1
scaffold_8	retained_intron	6027967	6028061	+	asmbl_51909	none	blat.proc3829875.chain_2557	1	blat.proc3829875.chain_2551,blat.proc3829875.chain_2552,blat.proc3829875.chain_2553,blat.proc3829875.chain_2555	4
scaffold_6	retained_intron	16104047	16104276	-	asmbl_49040	none	Trinity_GG_21765_c0_g1_i2	1	blat.proc3829891.chain_654	1
scaffold_8	retained_intron	11111045	11111142	+	asmbl_52186	none	STRG.10317.2,blat.proc3829875.chain_2834	2	STRG.10317.3,blat.proc3829875.chain_2831	2
scaffold_5	ends_in_intron	4855144	4855144	-	asmbl_45406	none	blat.proc3829889.chain_2016	1	STRG.5937.1,STRG.5937.2,blat.proc3829889.chain_2017,blat.proc3829889.chain_2019	4
scaffold_25	ends_in_intron	800495	800495	-	asmbl_33991	none	STRG.27118.4	1	STRG.27118.1,STRG.27118.3	2
scaffold_1	retained_intron	12335617	12335989	-	asmbl_713,asmbl_714,asmbl_719,asmbl_720	none	blat.proc3829887.chain_738,blat.proc3829887.chain_742,blat.proc3829887.chain_744,blat.proc3829887.chain_745	4	STRG.843.1,STRG.843.2,blat.proc3829887.chain_734,blat.proc3829887.chain_735,blat.proc3829887.chain_736,blat.proc3829887.chain_737,blat.proc3829887.chain_739,blat.proc3829887.chain_741,blat.proc3829887.chain_743,blat.proc3829887.chain_746	10
scaffold_19	ends_in_intron	13264002	13264002	-	asmbl_21853	none	Trinity_GG_29623_c0_g1_i4,blat.proc3829897.chain_3421	2	STRG.22635.1,STRG.22635.2,blat.proc3829897.chain_3422	3
scaffold_16	alt_donor	2386381	2386382	-	asmbl_16136	none	STRG.19122.2	1	STRG.19122.3	1
scaffold_5	ends_in_intron	10885235	10885235	+	asmbl_44376,asmbl_44379	none	STRG.6352.2,blat.proc3829873.chain_2507,blat.proc3829873.chain_2508	3	STRG.6352.1,blat.proc3829873.chain_2506	2
scaffold_1	alt_acceptor	18275989	18275990	+	asmbl_2530	none	STRG.1274.1,blat.proc3829871.chain_1313	2	STRG.1274.2	1
scaffold_21	retained_intron	5979198	5979219	-	asmbl_27739,asmbl_27740	none	STRG.24126.2,STRG.24126.3	2	STRG.24126.1	1
scaffold_13	alt_acceptor	7526169	7526170	-	asmbl_9858	none	STRG.16032.1,Trinity_GG_26032_c0_g1_i1,blat.proc3829895.chain_832	3	STRG.16032.2,STRG.16032.3,Trinity_GG_26032_c0_g1_i3,Trinity_GG_26032_c0_g1_i4,blat.proc3829895.chain_831,blat.proc3829895.chain_833	6
scaffold_21	retained_intron	8129161	8129599	-	asmbl_27909	none	STRG.24334.1,Trinity_GG_30568_c0_g1_i8,blat.proc3829899.chain_1386	3	blat.proc3829899.chain_1382,blat.proc3829899.chain_1384	2
scaffold_4	alt_donor	12788899	12788900	+	asmbl_43084,asmbl_43086	none	STRG.4920.1,blat.proc3829873.chain_1273	2	STRG.4920.2,STRG.4920.3,blat.proc3829873.chain_1275	3
scaffold_8	alternate_exon	16507020	16517924	-	asmbl_53418,asmbl_53422,asmbl_53424	none	blat.proc3829891.chain_2860,blat.proc3829891.chain_2864,blat.proc3829891.chain_2869	3	Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2867,blat.proc3829891.chain_2868	5
scaffold_13	starts_in_intron	14561182	14561182	-	asmbl_10172	none	blat.proc3829895.chain_1171	1	STRG.16497.1,STRG.16497.2,STRG.16497.3,STRG.16497.4,STRG.16497.5,blat.proc3829895.chain_1167,blat.proc3829895.chain_1170,blat.proc3829895.chain_1172	8
scaffold_13	spliced_intron	8022246	8022334	-	asmbl_9894,asmbl_9895	none	STRG.16071.2,blat.proc3829895.chain_854	2	STRG.16071.1,blat.proc3829895.chain_853	2
scaffold_21	retained_intron	5536672	5536770	-	asmbl_27698,asmbl_27699,asmbl_27701,asmbl_27703	none	STRG.24073.2,Trinity_GG_30443_c0_g1_i6,blat.proc3829899.chain_1163,blat.proc3829899.chain_1166,blat.proc3829899.chain_1167	5	STRG.24073.1,STRG.24073.3,blat.proc3829899.chain_1165,blat.proc3829899.chain_1168	4
scaffold_10	spliced_intron	12679575	12679670	+	asmbl_4811	none	STRG.12848.2,blat.proc3829877.chain_1443	2	STRG.12848.1,blat.proc3829877.chain_1442	2
scaffold_17	alt_acceptor	14543196	14543197	+	asmbl_18531	none	STRG.20918.5	1	STRG.20918.1,STRG.20918.2,STRG.20918.3,STRG.20918.4	4
scaffold_13	alt_acceptor	6802294	6802295	+	asmbl_10961,asmbl_10964	none	STRG.15957.1,blat.proc3829879.chain_658,blat.proc3829879.chain_660	3	STRG.15957.2,blat.proc3829879.chain_659	2
scaffold_28	starts_in_intron	4207689	4207689	+	asmbl_38221	none	STRG.29593.6	1	STRG.29593.1,STRG.29593.4,STRG.29593.5,blat.proc3829885.chain_2724	4
scaffold_28	retained_intron	5611496	5611679	-	asmbl_37621,asmbl_37622,asmbl_37623,asmbl_37626,asmbl_37627	none	STRG.29674.2,STRG.29674.3,STRG.29674.4,STRG.29674.5,Trinity_GG_33655_c0_g1_i1,Trinity_GG_33655_c0_g1_i6,Trinity_GG_33655_c0_g1_i8,blat.proc3829901.chain_2808,blat.proc3829901.chain_2809,blat.proc3829901.chain_2810,blat.proc3829901.chain_2811	11	STRG.29674.1,STRG.29674.6,Trinity_GG_33655_c0_g1_i9,blat.proc3829901.chain_2806,blat.proc3829901.chain_2807	5
scaffold_9	skipped_exon	5549383	5552354	-	asmbl_54972,asmbl_54974	none	STRG.11124.1,blat.proc3829891.chain_3225,blat.proc3829891.chain_3226	3	STRG.11124.3	1
scaffold_25	skipped_exon	4117889	4118352	+	asmbl_33472	none	blat.proc3829885.chain_276	1	STRG.27327.1,STRG.27327.2,blat.proc3829885.chain_277	3
scaffold_10	retained_intron	14680476	14680668	+	asmbl_4917	none	STRG.12999.1,Trinity_GG_7160_c0_g1_i1,Trinity_GG_7160_c0_g1_i3,blat.proc3829877.chain_1565,blat.proc3829877.chain_1566	5	Trinity_GG_7160_c0_g1_i2,blat.proc3829877.chain_1567	2
scaffold_13	alt_donor	3085081	3085082	+	asmbl_10642	none	STRG.15600.1,blat.proc3829879.chain_325	2	STRG.15600.2,blat.proc3829879.chain_324	2
scaffold_11	ends_in_intron	15836156	15836156	+	asmbl_6117	none	blat.proc3829877.chain_2738	1	STRG.14312.4	1
scaffold_2	retained_intron	5183182	5183574	-	asmbl_23158	none	STRG.1936.1,blat.proc3829887.chain_1855	2	blat.proc3829887.chain_1859	1
scaffold_8	starts_in_intron	18107529	18107529	+	asmbl_52527	none	STRG.10708.3,Trinity_GG_5942_c0_g1_i2,blat.proc3829875.chain_3203	3	STRG.10708.1,STRG.10708.2,Trinity_GG_5942_c0_g1_i1,Trinity_GG_5942_c0_g1_i3,blat.proc3829875.chain_3201,blat.proc3829875.chain_3202	6
scaffold_15	retained_intron	8290704	8290838	-	asmbl_15357	none	blat.proc3829895.chain_3140	1	STRG.18381.1,blat.proc3829895.chain_3141	2
scaffold_3	spliced_intron	14317546	14317663	-	asmbl_39302,asmbl_39303,asmbl_39306	none	STRG.3769.1,STRG.3769.2,blat.proc3829887.chain_3562,blat.proc3829887.chain_3563	4	blat.proc3829887.chain_3561	1
scaffold_8	ends_in_intron	8793490	8793490	-	asmbl_52967	none	blat.proc3829891.chain_2255	1	STRG.10127.1,blat.proc3829891.chain_2254,blat.proc3829891.chain_2256	3
scaffold_12	alt_donor	4613553	4613554	-	asmbl_7548,asmbl_7549,asmbl_7553	none	STRG.14626.1,blat.proc3829893.chain_2997,blat.proc3829893.chain_2999,blat.proc3829893.chain_3001	4	STRG.14626.2,STRG.14626.4,blat.proc3829893.chain_2996,blat.proc3829893.chain_2998	4
scaffold_11	starts_in_intron	16460674	16460674	+	asmbl_6133	none	STRG.14327.2,blat.proc3829877.chain_2724	2	STRG.14327.1	1
scaffold_26	alt_acceptor	968830	968831	-	asmbl_34672	none	STRG.27878.1,blat.proc3829901.chain_1136	2	STRG.27878.2	1
scaffold_4	retained_exon	16872468	16872569	-	asmbl_41979	none	STRG.5279.2	1	STRG.5279.1,blat.proc3829889.chain_1280,blat.proc3829889.chain_1282	3
scaffold_20	ends_in_intron	7475142	7475142	-	asmbl_26834	none	Trinity_GG_30045_c0_g1_i5,blat.proc3829899.chain_397	2	STRG.23308.1,blat.proc3829899.chain_389,blat.proc3829899.chain_390,blat.proc3829899.chain_393,blat.proc3829899.chain_396,blat.proc3829899.chain_399	6
scaffold_13	spliced_intron	222006	222122	+	asmbl_10431,asmbl_10434	none	STRG.15414.1,blat.proc3829879.chain_100,blat.proc3829879.chain_99	3	blat.proc3829879.chain_98	1
scaffold_17	alternate_exon	9571879	9571920	+	asmbl_18245	none	Trinity_GG_11245_c0_g1_i1,blat.proc3829881.chain_1333	2	STRG.20567.1,STRG.20567.2,blat.proc3829881.chain_1332,blat.proc3829881.chain_1334	4
scaffold_16	spliced_intron	5488508	5488595	-	asmbl_16283	none	STRG.19290.1,Trinity_GG_27854_c0_g1_i3,blat.proc3829897.chain_338	3	STRG.19290.2,Trinity_GG_27854_c0_g1_i2,blat.proc3829897.chain_339	3
scaffold_13	ends_in_intron	3243173	3243173	+	asmbl_10654	none	Trinity_GG_8603_c1_g1_i1,blat.proc3829879.chain_350	2	STRG.15616.1,blat.proc3829879.chain_348,blat.proc3829879.chain_349	3
scaffold_2	alt_acceptor	9123247	9123248	+	asmbl_24700	none	STRG.2159.2	1	STRG.2159.1,Trinity_GG_1192_c0_g1_i1,blat.proc3829871.chain_2224	3
scaffold_3	skipped_exon	11777605	11778736	-	asmbl_39143	none	STRG.3606.1,blat.proc3829887.chain_3381	2	STRG.3606.2	1
scaffold_8	alternate_exon	15684989	15685979	-	asmbl_53341	none	STRG.10564.2,Trinity_GG_22882_c0_g1_i2,blat.proc3829891.chain_2709	3	STRG.10564.1,Trinity_GG_22882_c0_g1_i1,blat.proc3829891.chain_2710	3
scaffold_2	alt_acceptor	20209538	20209539	+	asmbl_25340	none	STRG.2860.1,blat.proc3829871.chain_3006	2	STRG.2860.2	1
scaffold_2	retained_exon	14342901	14343035	-	asmbl_23610	none	STRG.2433.1,blat.proc3829887.chain_2305	2	blat.proc3829887.chain_2307	1
scaffold_12	alternate_exon	14256064	14256102	+	asmbl_9040	none	Trinity_GG_8401_c0_g1_i1,blat.proc3829877.chain_3698	2	STRG.15246.1,STRG.15246.3	2
scaffold_6	ends_in_intron	1747754	1747754	+	asmbl_46685	none	blat.proc3829873.chain_3271	1	STRG.7223.2,STRG.7223.3,blat.proc3829873.chain_3275	3
scaffold_701	alt_acceptor	3864	3865	-	asmbl_51552,asmbl_51553	none	STRG.30415.1,STRG.30415.2,blat.proc3829901.chain_3452,blat.proc3829901.chain_3453	4	STRG.30415.3	1
scaffold_4	retained_intron	5648305	5648753	-	asmbl_41353,asmbl_41371	none	Trinity_GG_19533_c1_g1_i2,blat.proc3829889.chain_615,blat.proc3829889.chain_618	3	STRG.4469.1,STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_614,blat.proc3829889.chain_617,blat.proc3829889.chain_619	7
scaffold_4	retained_exon	16882857	16882985	-	asmbl_41984	none	STRG.5276.2	1	STRG.5276.1,Trinity_GG_19953_c0_g1_i1,blat.proc3829889.chain_1320	3
scaffold_3	alt_donor	3251202	3251203	+	asmbl_39898,asmbl_39903	none	STRG.3087.4,STRG.3087.5	2	STRG.3087.1,STRG.3087.6,blat.proc3829871.chain_3306,blat.proc3829871.chain_3309	4
scaffold_5	alt_acceptor	14205738	14205739	-	asmbl_45972	none	STRG.6620.2	1	STRG.6620.1	1
scaffold_1	alt_acceptor	17524289	17524290	-	asmbl_1035	none	STRG.1213.1,Trinity_GG_17656_c0_g1_i1,blat.proc3829887.chain_1095	3	STRG.1212.2	1
scaffold_7	starts_in_intron	1315754	1315754	-	asmbl_49526	none	blat.proc3829891.chain_987	1	STRG.8622.1,blat.proc3829891.chain_988	2
scaffold_27	alternate_exon	2876009	2876082	+	asmbl_36096	none	STRG.28749.3,blat.proc3829885.chain_1831	2	STRG.28749.1,blat.proc3829885.chain_1830	2
scaffold_26	alt_acceptor	8576993	8576994	+	asmbl_35705	none	STRG.28421.1,blat.proc3829885.chain_1470	2	STRG.28421.2,blat.proc3829885.chain_1471	2
scaffold_70	retained_intron	11417	11841	+	asmbl_51550	none	Trinity_GG_16663_c0_g1_i1,blat.proc3829885.chain_3153	2	STRG.30087.1,blat.proc3829885.chain_3151,blat.proc3829885.chain_3152	3
scaffold_5	alternate_exon	16291664	16291692	+	asmbl_44739	none	blat.proc3829873.chain_2944	1	STRG.6811.3,Trinity_GG_3725_c0_g1_i3,blat.proc3829873.chain_2945	3
scaffold_14	alt_donor	1377484	1377485	-	asmbl_12855,asmbl_12856,asmbl_12858	none	STRG.16775.1,STRG.16775.2,blat.proc3829895.chain_1487,blat.proc3829895.chain_1488,blat.proc3829895.chain_1489	5	STRG.16775.3	1
scaffold_13	retained_exon	6804014	6804145	+	asmbl_10961,asmbl_10965	none	STRG.15957.1,blat.proc3829879.chain_659,blat.proc3829879.chain_660	3	STRG.15957.2,blat.proc3829879.chain_658	2
scaffold_23	alt_acceptor	10764266	10764267	-	asmbl_31869	none	STRG.26250.1,blat.proc3829899.chain_3299	2	STRG.26250.2	1
scaffold_2	starts_in_intron	19318912	19318912	+	asmbl_25305	none	blat.proc3829871.chain_2957	1	STRG.2795.1,blat.proc3829871.chain_2958	2
scaffold_21	starts_in_intron	2954195	2954195	+	asmbl_28452	none	Trinity_GG_13236_c0_g1_i2,blat.proc3829883.chain_1036	2	STRG.23906.1,STRG.23906.2,blat.proc3829883.chain_1035,blat.proc3829883.chain_1037	4
scaffold_2	alternate_exon	3746160	3746251	-	asmbl_23019	none	STRG.1805.1,blat.proc3829887.chain_1628	2	STRG.1805.2,blat.proc3829887.chain_1627	2
scaffold_15	alt_acceptor	4984104	4984105	-	asmbl_15186,asmbl_15190,asmbl_15191,asmbl_15192	none	STRG.18197.1,STRG.18197.5,blat.proc3829895.chain_2985,blat.proc3829895.chain_2986,blat.proc3829895.chain_2987,blat.proc3829895.chain_2988	6	STRG.18197.3,STRG.18197.4	2
scaffold_15	alternate_exon	2563725	2565024	+	asmbl_14006	none	STRG.18036.3	1	STRG.18036.2	1
scaffold_14	starts_in_intron	16128051	16128051	-	asmbl_13757	none	blat.proc3829895.chain_2535	1	STRG.17844.1,blat.proc3829891.chain_1052,blat.proc3829895.chain_2534	3
scaffold_7	retained_intron	8518033	8520452	+	asmbl_50896	none	STRG.9071.1	1	STRG.9071.2	1
scaffold_9	retained_intron	15589185	15589902	+	asmbl_54559,asmbl_54560	none	blat.proc3829877.chain_500,blat.proc3829877.chain_501	2	blat.proc3829877.chain_498,blat.proc3829877.chain_499	2
scaffold_5	retained_exon	10171023	10171094	+	asmbl_44331	none	STRG.6310.1,blat.proc3829873.chain_2380	2	blat.proc3829873.chain_2378	1
scaffold_4	alt_donor	6701505	6701506	+	asmbl_42753	none	STRG.4530.3	1	STRG.4530.1,STRG.4530.2,blat.proc3829873.chain_876	3
scaffold_4	retained_intron	18296287	18296326	+	asmbl_43440,asmbl_43442	none	STRG.5429.1,STRG.5429.2,STRG.5429.3,Trinity_GG_2984_c1_g1_i1	4	blat.proc3829873.chain_1652	1
scaffold_21	retained_intron	731085	731446	+	asmbl_28311	none	STRG.23754.3,Trinity_GG_13126_c0_g2_i1,blat.proc3829883.chain_854	3	STRG.23754.1,STRG.23754.2,STRG.23754.4,Trinity_GG_13126_c0_g1_i1,blat.proc3829883.chain_853	5
scaffold_18	retained_intron	11327584	11327791	+	asmbl_20963,asmbl_20965	none	STRG.21666.1,blat.proc3829881.chain_2648,blat.proc3829881.chain_2651	3	STRG.21666.2,blat.proc3829881.chain_2659	2
scaffold_4	alt_donor	17122777	17122778	-	asmbl_42002,asmbl_42005,asmbl_42006	none	STRG.5310.1,STRG.5310.3,STRG.5310.4	3	STRG.5310.2,STRG.5310.5	2
scaffold_21	ends_in_intron	254802	254802	-	asmbl_27312,asmbl_27317	none	Trinity_GG_30232_c0_g1_i2,blat.proc3829899.chain_784,blat.proc3829899.chain_789,blat.proc3829899.chain_791,blat.proc3829899.chain_794	5	STRG.23718.1,STRG.23718.2,blat.proc3829899.chain_793	3
scaffold_12	alt_acceptor	15681503	15681504	-	asmbl_8236	none	STRG.15344.4	1	STRG.15344.1,STRG.15344.2,STRG.15344.3,STRG.15344.5,blat.proc3829895.chain_19,blat.proc3829895.chain_20,blat.proc3829895.chain_21,blat.proc3829895.chain_22	8
scaffold_1	ends_in_intron	9298983	9298983	-	asmbl_542	none	STRG.627.1	1	Trinity_GG_17319_c0_g1_i2	1
scaffold_23	spliced_intron	10897406	10897583	+	asmbl_31181	none	STRG.26269.2,blat.proc3829883.chain_3191	2	blat.proc3829883.chain_3189	1
scaffold_15	retained_exon	15409904	15409992	+	asmbl_14717,asmbl_14718,asmbl_14725	none	STRG.18921.2,STRG.18921.3,STRG.18921.9,blat.proc3829879.chain_3515,blat.proc3829879.chain_3517	5	STRG.18921.1,STRG.18921.10,STRG.18921.5,STRG.18921.7,STRG.18921.8,blat.proc3829879.chain_3514,blat.proc3829879.chain_3518	7
scaffold_25	starts_in_intron	1438960	1438960	+	asmbl_33366,asmbl_33370,asmbl_33371	none	STRG.27161.3,STRG.27161.4,Trinity_GG_14981_c0_g1_i1,blat.proc3829885.chain_226,blat.proc3829885.chain_228	5	STRG.27161.1,STRG.27161.2,blat.proc3829885.chain_227	3
scaffold_7	alternate_exon	8504960	8505180	+	asmbl_50890	none	STRG.9068.3	1	STRG.9068.1,STRG.9068.2,STRG.9068.4,blat.proc3829875.chain_1525,blat.proc3829875.chain_1526,blat.proc3829875.chain_1527	6
scaffold_1	skipped_exon	11446591	11447975	-	asmbl_625	none	STRG.752.2	1	STRG.752.1,blat.proc3829887.chain_603	2
scaffold_11	spliced_intron	8082241	8082340	+	asmbl_5681	none	Trinity_GG_7572_c0_g1_i3,blat.proc3829877.chain_2234	2	STRG.13803.1,STRG.13803.2,Trinity_GG_7572_c0_g1_i1,Trinity_GG_7572_c0_g1_i2,Trinity_GG_7572_c0_g1_i4,blat.proc3829877.chain_2231,blat.proc3829877.chain_2232,blat.proc3829877.chain_2233	8
scaffold_4	starts_in_intron	16313013	16313013	-	asmbl_41901	none	blat.proc3829889.chain_1229	1	STRG.5204.1,blat.proc3829889.chain_1231	2
scaffold_20	alt_acceptor	11948483	11948484	-	asmbl_27135,asmbl_27136	none	blat.proc3829899.chain_605,blat.proc3829899.chain_606	2	STRG.23687.2	1
scaffold_14	retained_intron	11388081	11388304	-	asmbl_13464,asmbl_13465	none	STRG.17457.4,blat.proc3829895.chain_2098	2	STRG.17457.1,STRG.17457.2,STRG.17457.3,blat.proc3829895.chain_2095,blat.proc3829895.chain_2096	5
scaffold_13	ends_in_intron	9359803	9359803	-	asmbl_9988	none	blat.proc3829895.chain_856	1	STRG.16193.1,blat.proc3829895.chain_857	2
scaffold_14	alt_donor	2389115	2389116	-	asmbl_12930	none	STRG.16841.2	1	STRG.16841.1,STRG.16841.3	2
scaffold_20	ends_in_intron	10676820	10676820	+	asmbl_26135	none	blat.proc3829883.chain_730	1	STRG.23587.1,STRG.23587.2,blat.proc3829883.chain_731	3
scaffold_26	spliced_intron	9772970	9773112	+	asmbl_35777,asmbl_35779,asmbl_35782,asmbl_35787,asmbl_35788,asmbl_35790	none	STRG.28501.1,STRG.28501.2,STRG.28501.5,STRG.28501.6,blat.proc3829885.chain_1436,blat.proc3829885.chain_1437	6	STRG.28501.10,STRG.28501.3,STRG.28501.4,STRG.28501.9,blat.proc3829885.chain_1432,blat.proc3829885.chain_1433,blat.proc3829885.chain_1434,blat.proc3829885.chain_1435	8
scaffold_19	retained_intron	13637265	13638466	-	asmbl_21888	none	STRG.22671.2,Trinity_GG_29644_c0_g1_i1,blat.proc3829897.chain_3449,blat.proc3829897.chain_3450	4	STRG.22671.1	1
scaffold_19	retained_intron	2696720	2696863	+	asmbl_22072	none	Trinity_GG_12138_c0_g1_i1	1	STRG.21943.1	1
scaffold_28	starts_in_intron	4206867	4206867	+	asmbl_38217	none	Trinity_GG_16421_c0_g1_i1,blat.proc3829885.chain_2723	2	STRG.29593.1,STRG.29593.4,STRG.29593.5,blat.proc3829885.chain_2724	4
scaffold_6	starts_in_intron	10232562	10232562	+	asmbl_47214	none	Trinity_GG_4309_c0_g1_i2,blat.proc3829875.chain_240	2	STRG.7857.1,blat.proc3829875.chain_241	2
scaffold_1	spliced_intron	19006302	19006412	+	asmbl_2560,asmbl_2561	none	STRG.1322.2,STRG.1322.3	2	STRG.1322.4	1
scaffold_14	alt_donor	2388946	2388947	-	asmbl_12931	none	STRG.16841.3	1	STRG.16841.1,STRG.16841.2	2
scaffold_8	skipped_exon	17651645	17653997	-	asmbl_53486	none	STRG.10674.1,blat.proc3829891.chain_2795	2	STRG.10674.2,blat.proc3829891.chain_2794	2
scaffold_10	starts_in_intron	635619	635619	-	asmbl_2895	none	STRG.11933.4	1	STRG.11933.1,blat.proc3829893.chain_378	2
scaffold_1	spliced_intron	5736121	5736230	+	asmbl_1758,asmbl_1759,asmbl_1762,asmbl_1763	none	STRG.380.1,STRG.380.2,STRG.380.3,blat.proc3829871.chain_443,blat.proc3829871.chain_445,blat.proc3829871.chain_446	6	Trinity_GG_251_c0_g1_i1,blat.proc3829871.chain_444	2
scaffold_8	starts_in_intron	11954962	11954962	+	asmbl_52286	none	Trinity_GG_5776_c0_g1_i1,blat.proc3829875.chain_2884	2	STRG.10389.1,STRG.10389.2,blat.proc3829875.chain_2885,blat.proc3829875.chain_2888	4
scaffold_26	alternate_exon	4819340	4819559	+	asmbl_35456,asmbl_35457	none	STRG.28182.2,blat.proc3829885.chain_1146	2	STRG.28182.1,blat.proc3829885.chain_1144,blat.proc3829885.chain_1145,blat.proc3829885.chain_1147	4
scaffold_8	retained_intron	16502745	16503680	-	asmbl_53410	none	Trinity_GG_22960_c0_g1_i24,blat.proc3829891.chain_2856	2	STRG.10621.1,STRG.10621.2,STRG.10621.3,STRG.10621.4,Trinity_GG_22960_c0_g1_i18,Trinity_GG_22960_c0_g1_i19,Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2857,blat.proc3829891.chain_2860,blat.proc3829891.chain_2862,blat.proc3829891.chain_2863,blat.proc3829891.chain_2864,blat.proc3829891.chain_2867,blat.proc3829891.chain_2868,blat.proc3829891.chain_2869,blat.proc3829891.chain_2870,blat.proc3829891.chain_2871,blat.proc3829891.chain_2872	22
scaffold_6	retained_intron	3291114	3291248	+	asmbl_46772	none	blat.proc3829873.chain_3456	1	blat.proc3829873.chain_3454	1
scaffold_2	starts_in_intron	15333850	15333850	+	asmbl_25057	none	Trinity_GG_1406_c0_g1_i4,blat.proc3829871.chain_2660	2	STRG.2483.1,STRG.2483.2,STRG.2483.3,Trinity_GG_1406_c0_g1_i1,Trinity_GG_1406_c0_g1_i2,Trinity_GG_1406_c0_g1_i3,Trinity_GG_1406_c0_g1_i6	7
scaffold_8	spliced_intron	8733303	8733398	+	asmbl_52012,asmbl_52013	none	STRG.10125.3,STRG.10125.5	2	STRG.10125.2,STRG.10125.4,Trinity_GG_5629_c1_g1_i1,Trinity_GG_5629_c2_g1_i4,blat.proc3829875.chain_2629,blat.proc3829875.chain_2630,blat.proc3829875.chain_2631	7
scaffold_2	spliced_intron	950492	950626	+	asmbl_24186,asmbl_24187,asmbl_24188,asmbl_24189	none	STRG.1574.1,STRG.1574.2,STRG.1574.3,STRG.1574.4	4	blat.proc3829871.chain_1647	1
scaffold_3	alt_donor	8253370	8253371	+	asmbl_40166	none	STRG.3399.2	1	STRG.3399.1,Trinity_GG_1923_c0_g1_i2,blat.proc3829871.chain_3568	3
scaffold_5	ends_in_intron	11121882	11121882	-	asmbl_45787	none	blat.proc3829889.chain_2452	1	STRG.6392.1,blat.proc3829889.chain_2450	2
scaffold_11	alternate_exon	6259575	6259633	+	asmbl_5588	none	STRG.13670.5	1	STRG.13670.1,STRG.13670.2,STRG.13670.4,blat.proc3829877.chain_2177,blat.proc3829877.chain_2180,blat.proc3829877.chain_2181	6
scaffold_26	skipped_exon	4141762	4142407	+	asmbl_35399	none	STRG.28106.3	1	STRG.28106.2	1
scaffold_12	starts_in_intron	3809851	3809851	-	asmbl_7507	none	blat.proc3829893.chain_2931	1	STRG.14575.1,blat.proc3829893.chain_2932	2
scaffold_14	retained_intron	12707267	12707317	-	asmbl_13576	none	STRG.17568.1	1	STRG.17568.2	1
scaffold_5	retained_intron	108645	109025	-	asmbl_45144	none	Trinity_GG_20162_c0_g1_i5	1	STRG.5570.1,STRG.5570.2	2
scaffold_25	retained_intron	9337633	9337746	+	asmbl_33797	none	blat.proc3829885.chain_772	1	blat.proc3829885.chain_775	1
scaffold_4	alt_donor	5830071	5830072	+	asmbl_42703	none	STRG.4481.1	1	STRG.4481.2,STRG.4481.3	2
scaffold_4	ends_in_intron	16518470	16518470	+	asmbl_43310	none	blat.proc3829873.chain_1507	1	STRG.5228.1	1
scaffold_25	alt_acceptor	6058560	6058561	-	asmbl_34285	none	STRG.27468.2	1	STRG.27468.1	1
scaffold_16	spliced_intron	6194354	6194440	+	asmbl_17084,asmbl_17085,asmbl_17087,asmbl_17088,asmbl_17089,asmbl_17090	none	STRG.19373.1,STRG.19373.2,STRG.19373.3,STRG.19373.4,blat.proc3829881.chain_125,blat.proc3829881.chain_126,blat.proc3829881.chain_127,blat.proc3829881.chain_128	8	blat.proc3829881.chain_131	1
scaffold_8	skipped_exon	14569488	14571071	+	asmbl_52377	none	STRG.10535.2	1	STRG.10535.1,blat.proc3829875.chain_3054	2
scaffold_21	alt_donor	7287144	7287145	-	asmbl_27813	none	STRG.24234.3,Trinity_GG_30523_c0_g1_i2,blat.proc3829899.chain_1302	3	STRG.24234.1,STRG.24234.2,Trinity_GG_30523_c0_g1_i1,blat.proc3829899.chain_1301	4
scaffold_7	alt_donor	8070034	8070035	+	asmbl_50837	none	STRG.9038.1,blat.proc3829875.chain_1462	2	STRG.9038.2,blat.proc3829875.chain_1463	2
scaffold_1	spliced_intron	19006360	19006412	+	asmbl_2559	none	STRG.1322.1	1	STRG.1322.4	1
scaffold_11	retained_intron	11785562	11785678	+	asmbl_5961	none	STRG.14087.1	1	STRG.14087.2	1
scaffold_9	skipped_exon	13851707	13854305	-	asmbl_55413	none	blat.proc3829893.chain_32	1	STRG.11644.3,blat.proc3829893.chain_31,blat.proc3829893.chain_33,blat.proc3829893.chain_35	4
scaffold_10	spliced_intron	5823736	5824113	+	asmbl_4487	none	STRG.12397.2,Trinity_GG_6884_c0_g1_i4,blat.proc3829877.chain_1050	3	STRG.12397.1,blat.proc3829877.chain_1049	2
scaffold_20	alternate_exon	9965343	9965583	-	asmbl_26992,asmbl_26993	none	STRG.23526.1,blat.proc3829899.chain_551	2	STRG.23526.3,blat.proc3829899.chain_550	2
scaffold_15	retained_exon	145339	145359	-	asmbl_14920,asmbl_14922	none	STRG.17865.2,blat.proc3829895.chain_2599	2	STRG.17865.5	1
scaffold_7	ends_in_intron	12610333	12610333	-	asmbl_50068	none	blat.proc3829891.chain_1595	1	STRG.9358.1,blat.proc3829891.chain_1596	2
scaffold_28	alt_donor	4240015	4240016	+	asmbl_38224	none	STRG.29590.1	1	STRG.29590.2	1
scaffold_12	spliced_intron	14962338	14962439	-	asmbl_8149	none	STRG.15272.2,blat.proc3829893.chain_3719	2	STRG.15272.1,Trinity_GG_25560_c0_g1_i3,blat.proc3829893.chain_3720,blat.proc3829893.chain_3721	4
scaffold_11	alternate_exon	3716520	3716562	-	asmbl_6545	none	STRG.13481.2,blat.proc3829893.chain_1931	2	STRG.13481.1,Trinity_GG_24555_c0_g2_i4	2
scaffold_6	spliced_intron	13871377	13871524	+	asmbl_47479	none	STRG.8125.2,blat.proc3829875.chain_561,blat.proc3829875.chain_563	3	STRG.8125.3,Trinity_GG_21655_c0_g1_i3,Trinity_GG_4470_c0_g1_i6,blat.proc3829875.chain_559,blat.proc3829891.chain_485	5
scaffold_5	alt_acceptor	3638364	3638365	+	asmbl_43898	none	STRG.5833.1,blat.proc3829873.chain_1970	2	STRG.5833.2,blat.proc3829873.chain_1971	2
scaffold_1	starts_in_intron	14363146	14363146	-	asmbl_913	none	blat.proc3829887.chain_882	1	STRG.1033.1,STRG.1033.2,STRG.1033.3,blat.proc3829887.chain_884,blat.proc3829887.chain_885,blat.proc3829887.chain_887	6
scaffold_16	skipped_exon	9032625	9033770	+	asmbl_17253,asmbl_17257	none	STRG.19501.2,blat.proc3829881.chain_388,blat.proc3829881.chain_389	3	STRG.19501.3,blat.proc3829881.chain_391	2
scaffold_14	alternate_exon	13599930	13599975	+	asmbl_12469	none	STRG.17629.1	1	STRG.17629.2,blat.proc3829879.chain_2307	2
scaffold_13	alt_acceptor	3922791	3922792	-	asmbl_9554,asmbl_9556	none	STRG.15707.2,STRG.15707.3,blat.proc3829895.chain_430	3	STRG.15707.1,blat.proc3829895.chain_431	2
scaffold_19	alternate_exon	5615562	5615641	-	asmbl_21382	none	STRG.22114.1,blat.proc3829897.chain_2883	2	STRG.22114.2	1
scaffold_1	spliced_intron	14355333	14355698	-	asmbl_905,asmbl_906,asmbl_907,asmbl_908	none	blat.proc3829887.chain_906,blat.proc3829887.chain_907,blat.proc3829887.chain_908,blat.proc3829887.chain_909	4	Trinity_GG_17550_c0_g1_i3,blat.proc3829887.chain_910	2
scaffold_18	alternate_exon	9685705	9686162	-	asmbl_20110,asmbl_20112	none	STRG.21570.1,STRG.21570.2,blat.proc3829897.chain_2417	3	STRG.21570.3	1
scaffold_12	alt_donor	14125257	14125258	-	asmbl_8118,asmbl_8119,asmbl_8120,asmbl_8122	none	STRG.15232.1,blat.proc3829893.chain_3710,blat.proc3829893.chain_3711	3	STRG.15232.2	1
scaffold_24	ends_in_intron	3747109	3747109	-	asmbl_32832,asmbl_32833	none	blat.proc3829899.chain_3615	1	STRG.26554.1,blat.proc3829899.chain_3614,blat.proc3829899.chain_3616	3
scaffold_21	starts_in_intron	6639098	6639098	+	asmbl_28703	none	Trinity_GG_13379_c2_g1_i1,blat.proc3829883.chain_1295	2	STRG.24176.1,STRG.24176.2,blat.proc3829883.chain_1292	3
scaffold_21	starts_in_intron	2246852	2246852	-	asmbl_27468	none	Trinity_GG_30301_c0_g1_i2,blat.proc3829899.chain_926	2	STRG.23828.1,Trinity_GG_30301_c0_g1_i1,blat.proc3829899.chain_925	3
scaffold_22	alt_acceptor	25406	25407	+	asmbl_29091,asmbl_29092	none	STRG.24646.1,STRG.24646.2,Trinity_GG_13608_c0_g1_i1,Trinity_GG_13608_c0_g1_i4,blat.proc3829883.chain_1666,blat.proc3829883.chain_1667	6	Trinity_GG_13608_c0_g1_i2,blat.proc3829883.chain_1665	2
scaffold_12	starts_in_intron	15672727	15672727	+	asmbl_9096	none	Trinity_GG_8437_c0_g1_i2,blat.proc3829879.chain_12	2	STRG.15343.1,Trinity_GG_8437_c0_g1_i1,blat.proc3829879.chain_13	3
scaffold_9	alt_acceptor	6396892	6396893	-	asmbl_55017	none	STRG.11162.2	1	STRG.11162.1,blat.proc3829891.chain_3250	2
scaffold_27	retained_intron	8919877	8919990	+	asmbl_36435	none	STRG.29112.1,Trinity_GG_16127_c0_g1_i1,blat.proc3829885.chain_2245	3	blat.proc3829885.chain_2246	1
scaffold_13	ends_in_intron	14158286	14158286	+	asmbl_11404,asmbl_11405	none	blat.proc3829879.chain_1234	1	STRG.16445.1,STRG.16445.2,blat.proc3829879.chain_1233,blat.proc3829879.chain_1235	4
scaffold_16	retained_exon	8640050	8640106	+	asmbl_17227,asmbl_17228,asmbl_17231	none	STRG.19479.2,STRG.19479.3,blat.proc3829881.chain_361,blat.proc3829881.chain_362	4	STRG.19479.1,Trinity_GG_10677_c0_g1_i4,blat.proc3829881.chain_363	3
scaffold_13	alt_acceptor	6396422	6396423	+	asmbl_10910	none	Trinity_GG_8718_c0_g1_i8,blat.proc3829879.chain_556	2	STRG.15914.3,STRG.15914.4,Trinity_GG_8718_c0_g1_i9,blat.proc3829879.chain_552	4
scaffold_18	alt_acceptor	9258671	9258672	-	asmbl_20094	none	STRG.21559.4	1	STRG.21559.3	1
scaffold_25	spliced_intron	6067602	6067783	-	asmbl_34294	none	blat.proc3829901.chain_721	1	blat.proc3829901.chain_716,blat.proc3829901.chain_718,blat.proc3829901.chain_719	3
scaffold_24	alt_donor	8747030	8747031	+	asmbl_32446	none	STRG.26872.1,Trinity_GG_14810_c0_g1_i2,blat.proc3829883.chain_3681	3	STRG.26872.3	1
scaffold_10	alt_donor	3928784	3928785	-	asmbl_3155	none	STRG.12230.4,blat.proc3829893.chain_695	2	STRG.12230.3,STRG.12230.5,blat.proc3829893.chain_691	3
scaffold_3	alternate_exon	6245582	6245714	-	asmbl_38890	none	STRG.3263.6	1	STRG.3263.1,STRG.3263.2,STRG.3263.5,STRG.3263.7,blat.proc3829887.chain_3031,blat.proc3829887.chain_3032,blat.proc3829887.chain_3034,blat.proc3829887.chain_3035	8
scaffold_11	spliced_intron	7049528	7049788	+	asmbl_5612,asmbl_5614,asmbl_5615	none	STRG.13722.2,STRG.13722.3,Trinity_GG_7553_c0_g1_i3,Trinity_GG_7553_c0_g1_i8,blat.proc3829877.chain_2193,blat.proc3829877.chain_2196	6	Trinity_GG_7553_c0_g1_i5,blat.proc3829877.chain_2195	2
scaffold_20	alternate_exon	5925337	5925444	+	asmbl_25801	none	STRG.23185.1	1	STRG.23185.2,Trinity_GG_12801_c0_g1_i1,blat.proc3829883.chain_313	3
scaffold_7	retained_exon	12452393	12452784	-	asmbl_50036,asmbl_50037,asmbl_50038,asmbl_50041,asmbl_50045	none	STRG.9342.1,Trinity_GG_22282_c1_g1_i7,Trinity_GG_22282_c1_g1_i9,blat.proc3829891.chain_1604,blat.proc3829891.chain_1606,blat.proc3829891.chain_1607,blat.proc3829891.chain_1614	7	STRG.9342.4	1
scaffold_12	alternate_exon	7650909	7651549	+	asmbl_8742	none	STRG.14833.3	1	STRG.14833.2,Trinity_GG_8196_c0_g1_i4,blat.proc3829877.chain_3327	3
scaffold_19	starts_in_intron	9430542	9430542	+	asmbl_22391	none	Trinity_GG_12357_c0_g1_i1,blat.proc3829881.chain_3281	2	STRG.22360.1,blat.proc3829881.chain_3282	2
scaffold_1	retained_intron	9254163	9254609	+	asmbl_1961,asmbl_1964	none	STRG.616.1,STRG.616.2,Trinity_GG_391_c0_g1_i2,blat.proc3829871.chain_681	4	STRG.616.4,Trinity_GG_391_c0_g1_i3,blat.proc3829871.chain_683	3
scaffold_5	alt_acceptor	16282513	16282514	+	asmbl_44734	none	Trinity_GG_3715_c0_g1_i3,blat.proc3829873.chain_2925	2	Trinity_GG_3715_c0_g1_i5,Trinity_GG_3715_c0_g1_i6,blat.proc3829873.chain_2926,blat.proc3829873.chain_2927	4
scaffold_1	alt_acceptor	9312657	9312658	+	asmbl_1974	none	STRG.625.2	1	STRG.625.1,blat.proc3829871.chain_686	2
scaffold_6	alt_acceptor	18920636	18920637	-	asmbl_49222	none	STRG.8553.3,blat.proc3829891.chain_867	2	STRG.8553.1,STRG.8553.2,blat.proc3829891.chain_868	3
scaffold_8	retained_intron	1207493	1207512	-	asmbl_52693	none	STRG.9740.2	1	STRG.9740.3	1
scaffold_9	alt_donor	5138118	5138119	-	asmbl_54952	none	STRG.11081.2,blat.proc3829891.chain_3175	2	STRG.11081.1,blat.proc3829891.chain_3174	2
scaffold_9	alt_donor	5279563	5279564	+	asmbl_53994,asmbl_53996	none	STRG.11095.1,blat.proc3829875.chain_3589	2	STRG.11095.3	1
scaffold_16	alt_donor	4149505	4149506	+	asmbl_16969	none	STRG.19218.1,Trinity_GG_10518_c0_g1_i2,blat.proc3829881.chain_44	3	STRG.19218.2,STRG.19218.3	2
scaffold_24	alt_donor	4808756	4808757	-	asmbl_32864	none	STRG.26596.2	1	STRG.26596.1,blat.proc3829899.chain_3638	2
scaffold_14	alt_acceptor	6062177	6062178	+	asmbl_12027	none	STRG.17052.2	1	STRG.17052.1,Trinity_GG_9379_c0_g1_i1,blat.proc3829879.chain_1769	3
scaffold_5	spliced_intron	189801	189832	+	asmbl_43749,asmbl_43750,asmbl_43751	none	STRG.5581.1,STRG.5581.3,STRG.5581.4	3	STRG.5581.2,Trinity_GG_3085_c4_g1_i2,Trinity_GG_3085_c4_g1_i6,blat.proc3829873.chain_1832	4
scaffold_21	spliced_intron	255543	255961	-	asmbl_27314,asmbl_27315,asmbl_27316,asmbl_27318,asmbl_27319,asmbl_27320,asmbl_27322,asmbl_27323,asmbl_27324,asmbl_27325	none	STRG.23718.2,STRG.23718.3,STRG.23718.4,STRG.23718.5,STRG.23718.6,STRG.23718.7,STRG.23718.8,blat.proc3829899.chain_781,blat.proc3829899.chain_782,blat.proc3829899.chain_785,blat.proc3829899.chain_786,blat.proc3829899.chain_787,blat.proc3829899.chain_788,blat.proc3829899.chain_792,blat.proc3829899.chain_793	15	STRG.23718.1,Trinity_GG_30232_c0_g1_i2,blat.proc3829899.chain_784,blat.proc3829899.chain_789,blat.proc3829899.chain_791,blat.proc3829899.chain_794	6
scaffold_5	alternate_exon	19029500	19029999	-	asmbl_46265	none	STRG.7018.1	1	STRG.7018.3,STRG.7018.4,STRG.7018.5,blat.proc3829889.chain_3003,blat.proc3829889.chain_3006,blat.proc3829889.chain_3009	6
scaffold_13	spliced_intron	7192853	7192955	-	asmbl_9818,asmbl_9819,asmbl_9820,asmbl_9825,asmbl_9828	none	STRG.16001.1,STRG.16001.2,STRG.16001.3,blat.proc3829895.chain_839,blat.proc3829895.chain_840,blat.proc3829895.chain_841,blat.proc3829895.chain_843,blat.proc3829895.chain_844	8	Trinity_GG_26037_c0_g1_i6,blat.proc3829895.chain_845	2
scaffold_5	alternate_exon	2609515	2609898	+	asmbl_43852	none	STRG.5778.2,Trinity_GG_3129_c1_g1_i1,blat.proc3829873.chain_1905	3	STRG.5778.1,blat.proc3829873.chain_1902,blat.proc3829873.chain_1904	3
scaffold_7	alternate_exon	7026355	7026458	+	asmbl_50778	none	STRG.8951.2,blat.proc3829875.chain_1377	2	STRG.8951.1,blat.proc3829875.chain_1378	2
scaffold_17	starts_in_intron	11611010	11611010	-	asmbl_19344	none	blat.proc3829897.chain_1655	1	STRG.20704.1,STRG.20704.2,blat.proc3829897.chain_1653,blat.proc3829897.chain_1654	4
scaffold_4	retained_intron	16912391	16912467	+	asmbl_43350	none	STRG.5280.3	1	STRG.5280.5	1
scaffold_25	starts_in_intron	2676720	2676720	+	asmbl_33397	none	STRG.27215.2	1	STRG.27215.1,blat.proc3829885.chain_222,blat.proc3829885.chain_224	3
scaffold_10	spliced_intron	8908482	8908686	+	asmbl_4616	none	blat.proc3829877.chain_1188	1	STRG.12627.1,blat.proc3829877.chain_1187	2
scaffold_8	alt_acceptor	9921998	9921999	-	asmbl_53069	none	STRG.10236.2	1	STRG.10236.1,blat.proc3829891.chain_2428	2
scaffold_15	starts_in_intron	13945931	13945931	-	asmbl_15702,asmbl_15703	none	blat.proc3829895.chain_3545,blat.proc3829895.chain_3546	2	STRG.18816.1,STRG.18816.4,blat.proc3829895.chain_3542,blat.proc3829895.chain_3544	4
scaffold_20	alt_acceptor	8034873	8034874	+	asmbl_25897,asmbl_25900	none	STRG.23341.2,STRG.23341.4	2	STRG.23341.1,STRG.23341.3	2
scaffold_20	retained_intron	5923668	5924088	-	asmbl_26707	none	STRG.23184.4,Trinity_GG_29913_c0_g1_i4,blat.proc3829899.chain_146	3	STRG.23184.3,blat.proc3829899.chain_144,blat.proc3829899.chain_149	3
scaffold_18	alternate_exon	1392132	1392292	-	asmbl_19653	none	Trinity_GG_28799_c0_g1_i5,blat.proc3829897.chain_1931	2	STRG.21014.1,STRG.21014.2,blat.proc3829897.chain_1932,blat.proc3829897.chain_1933,blat.proc3829897.chain_1935,blat.proc3829897.chain_1937	6
scaffold_14	retained_exon	8224594	8224751	+	asmbl_12191	none	STRG.17222.1,blat.proc3829879.chain_1985	2	STRG.17222.2,blat.proc3829879.chain_1986	2
scaffold_10	ends_in_intron	8540567	8540567	-	asmbl_3511	none	blat.proc3829893.chain_1116	1	STRG.12603.1,blat.proc3829893.chain_1115,blat.proc3829893.chain_1117	3
scaffold_17	spliced_intron	6390344	6390421	+	asmbl_17980	none	blat.proc3829881.chain_1035	1	Trinity_GG_11081_c1_g1_i2,blat.proc3829881.chain_1036	2
scaffold_11	skipped_exon	14531947	14532588	+	asmbl_6066,asmbl_6067,asmbl_6068,asmbl_6069	none	STRG.14239.1,STRG.14239.2,STRG.14239.3,Trinity_GG_7860_c0_g1_i2,Trinity_GG_7860_c0_g1_i6,Trinity_GG_7860_c0_g1_i7,blat.proc3829877.chain_2744,blat.proc3829877.chain_2745,blat.proc3829877.chain_2746,blat.proc3829877.chain_2747	10	STRG.14239.4	1
scaffold_25	alt_acceptor	4818578	4818579	+	asmbl_33536	none	STRG.27398.2	1	STRG.27398.1,STRG.27398.3,Trinity_GG_15069_c0_g1_i1,Trinity_GG_15069_c0_g1_i2,blat.proc3829885.chain_359,blat.proc3829885.chain_360	6
scaffold_5	retained_intron	7707898	7707967	+	asmbl_44164	none	blat.proc3829873.chain_2298	1	STRG.6139.1,STRG.6139.2,blat.proc3829873.chain_2297	3
scaffold_16	skipped_exon	1779104	1781016	+	asmbl_16876	none	STRG.19095.3,blat.proc3829879.chain_3708	2	STRG.19095.1,blat.proc3829879.chain_3709,blat.proc3829879.chain_3712	3
scaffold_24	spliced_intron	8736860	8737041	-	asmbl_33085,asmbl_33088,asmbl_33089	none	STRG.26873.1,blat.proc3829901.chain_171,blat.proc3829901.chain_172,blat.proc3829901.chain_173	4	STRG.26873.2,blat.proc3829901.chain_170	2
scaffold_24	starts_in_intron	1304114	1304114	-	asmbl_32716	none	blat.proc3829899.chain_3405	1	STRG.26369.1	1
scaffold_5	spliced_intron	14732294	14732395	-	asmbl_45994,asmbl_45997	none	STRG.6667.1,blat.proc3829889.chain_2713,blat.proc3829889.chain_2716	3	Trinity_GG_20753_c0_g1_i2,blat.proc3829889.chain_2715	2
scaffold_7	spliced_intron	12053972	12054062	+	asmbl_51084	none	STRG.9298.1,blat.proc3829875.chain_1756	2	blat.proc3829875.chain_1755	1
scaffold_25	spliced_intron	1903565	1903665	-	asmbl_34040	none	STRG.27182.2	1	STRG.27182.1	1
scaffold_7	alternate_exon	8315067	8315120	-	asmbl_49811	none	STRG.9058.2,blat.proc3829891.chain_1327	2	STRG.9058.3,STRG.9058.4,blat.proc3829891.chain_1326	3
scaffold_26	alternate_exon	9610402	9611762	+	asmbl_35769	none	STRG.28493.3	1	STRG.28493.2,Trinity_GG_15716_c0_g1_i6,blat.proc3829885.chain_1426	3
scaffold_15	ends_in_intron	5418229	5418229	+	asmbl_14144	none	Trinity_GG_9989_c0_g2_i1,blat.proc3829879.chain_2847	2	STRG.18212.1	1
scaffold_20	starts_in_intron	8167859	8167859	+	asmbl_25906	none	blat.proc3829883.chain_426	1	STRG.23350.1,STRG.23350.2,Trinity_GG_12869_c0_g1_i2,blat.proc3829883.chain_427	4
scaffold_7	alternate_exon	2582710	2582744	+	asmbl_50534	none	STRG.8684.2,Trinity_GG_4773_c0_g1_i1,blat.proc3829875.chain_1106	3	STRG.8684.1	1
scaffold_15	alternate_exon	7183429	7183837	-	asmbl_15294	none	STRG.18300.1,blat.proc3829895.chain_2964	2	STRG.18300.3,blat.proc3829895.chain_2963	2
scaffold_1	spliced_intron	20338943	20340702	+	asmbl_2603,asmbl_2606,asmbl_2609	none	STRG.1398.4,STRG.1398.5,blat.proc3829871.chain_1449,blat.proc3829871.chain_1452	4	STRG.1398.2,STRG.1398.3,STRG.1398.6,Trinity_GG_815_c2_g1_i8,blat.proc3829871.chain_1445,blat.proc3829871.chain_1446,blat.proc3829871.chain_1450	7
scaffold_20	alt_acceptor	1952437	1952438	-	asmbl_26552	none	blat.proc3829897.chain_3699	1	STRG.22923.1	1
scaffold_5	ends_in_intron	6607273	6607273	-	asmbl_45500	none	Trinity_GG_20415_c0_g1_i1,blat.proc3829889.chain_2127	2	STRG.6056.1	1
scaffold_18	alt_acceptor	1997966	1997967	-	asmbl_19722	none	STRG.21097.2	1	STRG.21097.1,blat.proc3829897.chain_1980	2
scaffold_9	retained_exon	9735874	9736023	+	asmbl_54231	none	STRG.11341.4	1	STRG.11341.1,blat.proc3829877.chain_146	2
scaffold_13	spliced_intron	14982062	14982116	-	asmbl_10185	none	STRG.16531.2	1	STRG.16531.1	1
scaffold_10	alternate_exon	17058026	17058083	-	asmbl_3928	none	STRG.13142.2	1	STRG.13142.3	1
scaffold_13	starts_in_intron	4078238	4078238	+	asmbl_10740,asmbl_10741	none	STRG.15718.2,STRG.15718.3	2	STRG.15718.1,blat.proc3829879.chain_426	2
scaffold_22	spliced_intron	5923249	5923359	+	asmbl_29361	none	STRG.24922.1,Trinity_GG_13792_c0_g1_i1,blat.proc3829883.chain_1977	3	STRG.24922.2,Trinity_GG_13792_c0_g1_i3,blat.proc3829883.chain_1978,blat.proc3829883.chain_1979	4
scaffold_1	starts_in_intron	4568459	4568459	-	asmbl_205	none	blat.proc3829887.chain_139	1	STRG.277.1,STRG.277.2,STRG.277.3,STRG.277.4,blat.proc3829887.chain_133,blat.proc3829887.chain_136,blat.proc3829887.chain_138	7
scaffold_4	alternate_exon	6186058	6186978	-	asmbl_41402,asmbl_41403	none	STRG.4487.1,Trinity_GG_19491_c0_g1_i1,blat.proc3829889.chain_541	3	STRG.4487.3,Trinity_GG_19491_c0_g1_i3,blat.proc3829889.chain_542	3
scaffold_10	alternate_exon	16073286	16073356	+	asmbl_4978	none	STRG.13077.2,Trinity_GG_7182_c0_g1_i1,blat.proc3829877.chain_1593	3	STRG.13077.1	1
scaffold_12	alternate_exon	10349053	10349305	-	asmbl_7875	none	STRG.14992.3	1	STRG.14992.1,STRG.14992.2,blat.proc3829893.chain_3386,blat.proc3829893.chain_3387	4
scaffold_25	alternate_exon	9431572	9431821	+	asmbl_33806	none	STRG.27738.3	1	STRG.27738.1,STRG.27738.2,Trinity_GG_15317_c0_g1_i2,blat.proc3829885.chain_781	4
scaffold_4	spliced_intron	7346985	7347256	-	asmbl_41450	none	STRG.4564.1,blat.proc3829889.chain_655	2	Trinity_GG_19555_c0_g1_i1,blat.proc3829889.chain_654	2
scaffold_5	retained_intron	19444958	19445069	-	asmbl_46288	none	STRG.7035.2,Trinity_GG_20923_c0_g1_i1,blat.proc3829889.chain_3014	3	STRG.7035.1,Trinity_GG_20923_c0_g1_i2,blat.proc3829889.chain_3015	3
scaffold_5	skipped_exon	18261866	18263891	+	asmbl_44893,asmbl_44896	none	STRG.6959.1,blat.proc3829873.chain_3105,blat.proc3829873.chain_3109	3	STRG.6959.2,blat.proc3829873.chain_3103	2
scaffold_13	alt_acceptor	3723700	3723701	+	asmbl_10707	none	STRG.15675.1,blat.proc3829879.chain_334	2	STRG.15675.2,blat.proc3829879.chain_333	2
scaffold_22	retained_intron	224379	224570	-	asmbl_29836,asmbl_29839	none	STRG.24671.2,Trinity_GG_30815_c0_g1_i2,Trinity_GG_30815_c0_g1_i5,blat.proc3829899.chain_1814,blat.proc3829899.chain_1815	5	STRG.24671.1,STRG.24671.3,Trinity_GG_30815_c0_g1_i1,Trinity_GG_30815_c0_g1_i3,blat.proc3829899.chain_1813,blat.proc3829899.chain_1816	6
scaffold_5	spliced_intron	12573137	12573215	-	asmbl_45854	none	STRG.6489.1,blat.proc3829889.chain_2589	2	blat.proc3829889.chain_2588	1
scaffold_13	ends_in_intron	8010713	8010713	+	asmbl_11072	none	Trinity_GG_8816_c0_g3_i1,blat.proc3829879.chain_766	2	STRG.16066.1,blat.proc3829879.chain_764	2
scaffold_3	ends_in_intron	10276876	10276876	+	asmbl_40210,asmbl_40212	none	STRG.3461.3,blat.proc3829871.chain_3622,blat.proc3829871.chain_3626	3	STRG.3461.1,STRG.3461.2,STRG.3461.4,blat.proc3829871.chain_3621,blat.proc3829871.chain_3623,blat.proc3829871.chain_3625	6
scaffold_17	starts_in_intron	3997656	3997656	+	asmbl_17880,asmbl_17884,asmbl_17885	none	blat.proc3829881.chain_990,blat.proc3829881.chain_991,blat.proc3829881.chain_992	3	STRG.20145.1,STRG.20145.2,blat.proc3829881.chain_988	3
scaffold_2	retained_exon	924482	924508	+	asmbl_24177	none	STRG.1569.3	1	STRG.1569.1,blat.proc3829871.chain_1534,blat.proc3829871.chain_1537	3
scaffold_7	starts_in_intron	8334612	8334612	-	asmbl_49821	none	STRG.9060.2,blat.proc3829891.chain_1318	2	STRG.9060.1,Trinity_GG_22126_c0_g1_i4,blat.proc3829891.chain_1313,blat.proc3829891.chain_1314	4
scaffold_13	spliced_intron	2340135	2340365	+	asmbl_10574,asmbl_10576,asmbl_10579,asmbl_10581,asmbl_10582,asmbl_10583,asmbl_10585,asmbl_10586,asmbl_10588,asmbl_10589,asmbl_10590,asmbl_10591	none	STRG.15543.10,STRG.15543.11,STRG.15543.3,STRG.15543.4,STRG.15543.6,STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_154,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_161,blat.proc3829879.chain_162,blat.proc3829879.chain_164	13	blat.proc3829879.chain_152,blat.proc3829879.chain_155,blat.proc3829879.chain_160	3
scaffold_8	retained_exon	740014	740175	+	asmbl_51654	none	blat.proc3829875.chain_2176	1	STRG.9720.1	1
scaffold_18	alt_donor	3605856	3605857	+	asmbl_20488	none	STRG.21167.3	1	STRG.21167.1,STRG.21167.2,blat.proc3829881.chain_2055	3
scaffold_4	starts_in_intron	8868791	8868791	+	asmbl_42926	none	Trinity_GG_2613_c0_g1_i2,blat.proc3829873.chain_1066	2	STRG.4701.1,Trinity_GG_2613_c0_g1_i1,blat.proc3829873.chain_1065	3
scaffold_5	ends_in_intron	4596519	4596519	+	asmbl_43937,asmbl_43939	none	STRG.5904.2,Trinity_GG_3229_c0_g1_i2,blat.proc3829873.chain_2041,blat.proc3829873.chain_2043	4	STRG.5904.1,blat.proc3829873.chain_2040	2
scaffold_15	spliced_intron	15435691	15435799	-	asmbl_15798	none	STRG.18920.3	1	STRG.18920.1,STRG.18920.2,Trinity_GG_27606_c0_g1_i4,blat.proc3829895.chain_3630,blat.proc3829895.chain_3631,blat.proc3829895.chain_3632,blat.proc3829895.chain_3633,blat.proc3829895.chain_3635	8
scaffold_7	alt_acceptor	13213512	13213513	+	asmbl_51203	none	STRG.9420.4	1	STRG.9420.3,blat.proc3829875.chain_1879	2
scaffold_13	spliced_intron	2338672	2340365	+	asmbl_10577,asmbl_10578	none	blat.proc3829879.chain_156,blat.proc3829879.chain_163	2	blat.proc3829879.chain_152,blat.proc3829879.chain_155	2
scaffold_2	retained_intron	690765	690806	+	asmbl_24117,asmbl_24118	none	STRG.1553.3,blat.proc3829871.chain_1529	2	STRG.1553.2	1
scaffold_27	alt_donor	6250325	6250326	+	asmbl_36347	none	STRG.28994.2	1	STRG.28994.1,blat.proc3829885.chain_2141	2
scaffold_15	retained_intron	4817650	4817737	-	asmbl_15174	none	blat.proc3829895.chain_2920	1	STRG.18192.1,blat.proc3829895.chain_2918	2
scaffold_5	retained_intron	14261932	14262734	+	asmbl_44583	none	STRG.6629.3,blat.proc3829873.chain_2762,blat.proc3829873.chain_2771	3	blat.proc3829873.chain_2769	1
scaffold_5	starts_in_intron	14711163	14711163	+	asmbl_44630,asmbl_44631	none	STRG.6666.3,Trinity_GG_3634_c0_g1_i1,blat.proc3829873.chain_2784	3	STRG.6666.1,blat.proc3829873.chain_2783	2
scaffold_13	starts_in_intron	13238133	13238133	+	asmbl_11353	none	Trinity_GG_9029_c0_g1_i4,blat.proc3829879.chain_1160	2	STRG.16383.1,blat.proc3829879.chain_1161,blat.proc3829879.chain_1162	3
scaffold_5	retained_intron	8119952	8121390	-	asmbl_45581	none	STRG.6166.1,blat.proc3829889.chain_2241	2	STRG.6166.2,blat.proc3829889.chain_2242	2
scaffold_2	ends_in_intron	61964	61964	+	asmbl_24087	none	Trinity_GG_861_c0_g1_i1,blat.proc3829871.chain_1557	2	STRG.1500.1,Trinity_GG_861_c0_g1_i2,blat.proc3829871.chain_1558	3
scaffold_21	spliced_intron	7367729	7367814	-	asmbl_27823,asmbl_27824	none	STRG.24244.1,STRG.24244.2,blat.proc3829899.chain_1316,blat.proc3829899.chain_1317	4	blat.proc3829899.chain_1314,blat.proc3829899.chain_1315	2
scaffold_11	spliced_intron	5651474	5651835	+	asmbl_5535	none	STRG.13620.1,blat.proc3829877.chain_2117	2	blat.proc3829877.chain_2115	1
scaffold_5	starts_in_intron	8133490	8133490	+	asmbl_44193	none	Trinity_GG_3372_c0_g1_i2,blat.proc3829873.chain_2320	2	STRG.6170.1,STRG.6170.2,blat.proc3829873.chain_2318,blat.proc3829873.chain_2319,blat.proc3829873.chain_2321	5
scaffold_13	alternate_exon	14563620	14566043	-	asmbl_10167,asmbl_10171	none	STRG.16497.2,blat.proc3829895.chain_1167	2	blat.proc3829895.chain_1170	1
scaffold_3	alternate_exon	3247118	3249029	+	asmbl_39903	none	STRG.3087.5,blat.proc3829871.chain_3305	2	STRG.3087.6,Trinity_GG_1771_c2_g1_i1,blat.proc3829871.chain_3313	3
scaffold_13	retained_intron	537327	537809	-	asmbl_9322,asmbl_9323,asmbl_9326	none	STRG.15432.1,STRG.15432.3,Trinity_GG_25674_c0_g1_i1,Trinity_GG_25674_c0_g1_i2,blat.proc3829895.chain_187,blat.proc3829895.chain_188	6	STRG.15432.2,Trinity_GG_25674_c0_g1_i4,blat.proc3829895.chain_189	3
scaffold_12	alt_donor	16316172	16316173	-	asmbl_8257,asmbl_8258	none	STRG.15369.1,blat.proc3829895.chain_112	2	STRG.15369.2,blat.proc3829895.chain_114	2
scaffold_25	retained_intron	1903565	1903665	-	asmbl_34041	none	STRG.27182.1	1	STRG.27182.2	1
scaffold_7	retained_intron	4931699	4933374	+	asmbl_50653	none	STRG.8834.3,Trinity_GG_4880_c0_g2_i1,blat.proc3829875.chain_1284	3	STRG.8834.2,blat.proc3829875.chain_1275,blat.proc3829875.chain_1276,blat.proc3829875.chain_1282	4
scaffold_27	spliced_intron	381928	382157	-	asmbl_36633	none	STRG.28547.1,blat.proc3829901.chain_1687	2	STRG.28547.3,blat.proc3829901.chain_1688	2
scaffold_9	ends_in_intron	12826010	12826010	+	asmbl_54449	none	STRG.11593.1,blat.proc3829877.chain_394,blat.proc3829877.chain_395	3	blat.proc3829877.chain_393	1
scaffold_24	alt_donor	6226489	6226490	-	asmbl_32935	none	Trinity_GG_31899_c0_g1_i9,blat.proc3829899.chain_3692	2	STRG.26664.3	1
scaffold_17	retained_intron	6975317	6976246	-	asmbl_19054,asmbl_19055	none	STRG.20347.2,blat.proc3829897.chain_1268	2	STRG.20347.1,blat.proc3829897.chain_1270	2
scaffold_6	alternate_exon	9133910	9134832	+	asmbl_47148,asmbl_47152	none	STRG.7784.3,blat.proc3829875.chain_202	2	STRG.7784.5	1
scaffold_15	starts_in_intron	3368419	3368419	-	asmbl_15099	none	blat.proc3829895.chain_2837	1	STRG.18096.1,STRG.18096.2	2
scaffold_7	retained_intron	13546792	13546895	+	asmbl_51243,asmbl_51244	none	blat.proc3829875.chain_1926,blat.proc3829875.chain_1928	2	STRG.9465.1,blat.proc3829875.chain_1929	2
scaffold_5	alt_acceptor	6052753	6052754	+	asmbl_44056	none	STRG.6016.1,blat.proc3829873.chain_2194	2	blat.proc3829873.chain_2193	1
scaffold_11	alt_donor	10398841	10398842	+	asmbl_5905,asmbl_5906	none	STRG.14037.1,blat.proc3829877.chain_2425,blat.proc3829877.chain_2426	3	STRG.14037.2,blat.proc3829877.chain_2427	2
scaffold_21	alternate_exon	10503622	10503792	-	asmbl_28078	none	STRG.24508.1	1	STRG.24508.2,STRG.24508.3,blat.proc3829899.chain_1655	3
scaffold_9	retained_exon	644291	644687	+	asmbl_53764	none	STRG.10785.3	1	STRG.10785.2	1
scaffold_4	alternate_exon	7307090	7307132	+	asmbl_42823	none	Trinity_GG_2535_c1_g1_i2,blat.proc3829873.chain_941	2	STRG.4559.1,blat.proc3829873.chain_940	2
scaffold_1	alt_donor	13927208	13927209	-	asmbl_866,asmbl_867	none	STRG.997.2,STRG.997.3	2	STRG.997.1,blat.proc3829887.chain_871	2
scaffold_1	alternate_exon	3526030	3526122	-	asmbl_163	none	STRG.213.2	1	STRG.213.4,blat.proc3829887.chain_93,blat.proc3829887.chain_94	3
scaffold_7	spliced_intron	12387853	12388105	-	asmbl_50020	none	blat.proc3829891.chain_1538	1	blat.proc3829891.chain_1534,blat.proc3829891.chain_1537	2
scaffold_18	skipped_exon	7241529	7241972	+	asmbl_20761	none	STRG.21440.2,blat.proc3829881.chain_2385	2	STRG.21440.1,blat.proc3829881.chain_2384	2
scaffold_3	retained_intron	13423924	13424030	-	asmbl_39213	none	STRG.3690.1	1	STRG.3690.3,STRG.3690.5	2
scaffold_3	skipped_exon	18154089	18156320	-	asmbl_39543	none	STRG.4023.1,blat.proc3829889.chain_97	2	STRG.4023.2,blat.proc3829889.chain_96	2
scaffold_6	retained_intron	8878330	8878408	-	asmbl_48530	none	blat.proc3829891.chain_8	1	STRG.7758.1,blat.proc3829891.chain_7	2
scaffold_13	ends_in_intron	2070913	2070913	+	asmbl_10546	none	Trinity_GG_8552_c0_g1_i1,blat.proc3829879.chain_250	2	STRG.15526.1,STRG.15526.2,blat.proc3829879.chain_249	3
scaffold_6	retained_intron	5930657	5931098	+	asmbl_46924	none	STRG.7539.2,blat.proc3829873.chain_3602	2	STRG.7539.1,blat.proc3829873.chain_3601	2
scaffold_23	alternate_exon	4158172	4158214	+	asmbl_30789	none	STRG.25814.1	1	STRG.25814.2,STRG.25814.3,Trinity_GG_14238_c0_g1_i1,blat.proc3829883.chain_2686	4
scaffold_25	retained_intron	996826	996894	-	asmbl_34008	none	blat.proc3829901.chain_444	1	STRG.27141.1,blat.proc3829901.chain_442,blat.proc3829901.chain_443	3
scaffold_26	starts_in_intron	9799876	9799876	+	asmbl_35794	none	Trinity_GG_15749_c0_g1_i1,blat.proc3829885.chain_1491	2	STRG.28497.1,Trinity_GG_15749_c0_g1_i2,blat.proc3829885.chain_1490	3
scaffold_8	retained_intron	6029233	6029335	+	asmbl_51911	none	blat.proc3829875.chain_2552	1	Trinity_GG_5590_c1_g1_i6,blat.proc3829875.chain_2551,blat.proc3829875.chain_2553,blat.proc3829875.chain_2554,blat.proc3829875.chain_2555	5
scaffold_22	spliced_intron	647867	648211	+	asmbl_29170	none	STRG.24700.1,Trinity_GG_13653_c0_g1_i2,blat.proc3829883.chain_1750	3	STRG.24700.2,Trinity_GG_13653_c0_g1_i1,blat.proc3829883.chain_1749	3
scaffold_24	retained_exon	9592087	9592147	-	asmbl_33130	none	STRG.26924.3	1	STRG.26924.1,blat.proc3829901.chain_225	2
scaffold_22	alt_donor	4897088	4897089	+	asmbl_29339	none	STRG.24890.2	1	STRG.24890.1,blat.proc3829883.chain_1950	2
scaffold_12	ends_in_intron	13515774	13515774	-	asmbl_8082	none	Trinity_GG_25453_c1_g1_i1,blat.proc3829893.chain_3516	2	STRG.15202.1,blat.proc3829893.chain_3515	2
scaffold_23	starts_in_intron	3438690	3438690	+	asmbl_30739	none	blat.proc3829883.chain_2649	1	STRG.25741.1,blat.proc3829883.chain_2650,blat.proc3829883.chain_2651	3
scaffold_16	skipped_exon	2336883	2337733	-	asmbl_16134	none	STRG.19119.2	1	STRG.19119.1,Trinity_GG_27736_c0_g1_i1,blat.proc3829897.chain_140	3
scaffold_13	alternate_exon	3707222	3707517	-	asmbl_9523,asmbl_9524,asmbl_9526,asmbl_9527	none	STRG.15671.3,STRG.15671.4,STRG.15671.5,STRG.15671.6,blat.proc3829895.chain_439	5	STRG.15671.1	1
scaffold_20	ends_in_intron	11144975	11144975	+	asmbl_26172,asmbl_26174	none	Trinity_GG_13048_c0_g1_i2,Trinity_GG_13048_c0_g1_i5,blat.proc3829883.chain_695,blat.proc3829883.chain_697	4	STRG.23625.1,STRG.23625.2,Trinity_GG_13048_c0_g1_i3,Trinity_GG_13048_c0_g1_i4,blat.proc3829883.chain_696,blat.proc3829883.chain_698	6
scaffold_6	spliced_intron	16272558	16272579	-	asmbl_49043	none	STRG.8343.2	1	STRG.8343.1,Trinity_GG_21767_c0_g1_i1	2
scaffold_18	starts_in_intron	1862861	1862861	-	asmbl_19686	none	STRG.21063.1	1	STRG.21063.2,STRG.21063.3,blat.proc3829897.chain_1841,blat.proc3829897.chain_1842	4
scaffold_21	retained_intron	457059	457190	-	asmbl_27352,asmbl_27353	none	blat.proc3829899.chain_763,blat.proc3829899.chain_766	2	STRG.23726.1,blat.proc3829899.chain_765	2
scaffold_27	alt_acceptor	1551365	1551366	+	asmbl_35986	none	STRG.28623.2	1	STRG.28623.1,Trinity_GG_15852_c0_g1_i3,Trinity_GG_15852_c0_g1_i5,blat.proc3829885.chain_1669,blat.proc3829885.chain_1670	5
scaffold_28	alt_acceptor	8411409	8411410	+	asmbl_38438	none	STRG.29889.2	1	STRG.29889.1,Trinity_GG_16553_c0_g1_i1,blat.proc3829885.chain_2981	3
scaffold_1	alt_donor	20138208	20138209	-	asmbl_1171	none	STRG.1381.3	1	STRG.1381.1,STRG.1381.2,STRG.1381.4,STRG.1381.5	4
scaffold_17	spliced_intron	8318778	8318915	+	asmbl_18093,asmbl_18094,asmbl_18095,asmbl_18096,asmbl_18098,asmbl_18099,asmbl_18100	none	STRG.20443.1,STRG.20443.2,STRG.20443.3,Trinity_GG_11211_c0_g1_i1,blat.proc3829881.chain_1250,blat.proc3829881.chain_1251,blat.proc3829881.chain_1252,blat.proc3829881.chain_1253	8	blat.proc3829881.chain_1249	1
scaffold_13	retained_intron	272420	275404	+	asmbl_10436	none	STRG.15416.1,blat.proc3829879.chain_125	2	blat.proc3829879.chain_127	1
scaffold_14	alternate_exon	11246423	11246477	-	asmbl_13446	none	STRG.17444.2	1	STRG.17444.1,STRG.17444.3,STRG.17444.4,blat.proc3829895.chain_2125,blat.proc3829895.chain_2126	5
scaffold_1	spliced_intron	20988978	20989300	+	asmbl_2659	none	STRG.1431.3,Trinity_GG_838_c0_g1_i4,blat.proc3829871.chain_1500	3	STRG.1431.1,Trinity_GG_838_c0_g1_i2,blat.proc3829871.chain_1498	3
scaffold_9	alt_donor	12143006	12143007	-	asmbl_55320	none	STRG.11519.2	1	STRG.11519.1,blat.proc3829891.chain_3567	2
scaffold_15	retained_intron	15414145	15414286	+	asmbl_14728,asmbl_14729,asmbl_14731,asmbl_14734	none	STRG.18922.1,STRG.18922.2,STRG.18922.4,blat.proc3829879.chain_3552,blat.proc3829879.chain_3556	5	STRG.18922.6,blat.proc3829879.chain_3550,blat.proc3829879.chain_3557	3
scaffold_26	ends_in_intron	8442085	8442085	-	asmbl_35004	none	blat.proc3829901.chain_1495	1	STRG.28419.1,blat.proc3829901.chain_1496	2
scaffold_5	retained_intron	10853174	10853266	+	asmbl_44369	none	blat.proc3829873.chain_2514	1	STRG.6350.1,STRG.6350.3,STRG.6350.4,blat.proc3829873.chain_2512,blat.proc3829873.chain_2513,blat.proc3829873.chain_2515,blat.proc3829873.chain_2516	7
scaffold_8	alternate_exon	15211188	15211238	+	asmbl_52385	none	STRG.10546.3	1	STRG.10546.2	1
scaffold_12	retained_intron	16399852	16401627	+	asmbl_9131,asmbl_9132,asmbl_9133	none	STRG.15385.1,STRG.15385.4,STRG.15385.6,Trinity_GG_8419_c0_g1_i1,Trinity_GG_8419_c0_g1_i2,Trinity_GG_8419_c0_g1_i6,blat.proc3829877.chain_3734,blat.proc3829877.chain_3735,blat.proc3829877.chain_3736	9	STRG.15385.2,STRG.15385.5,Trinity_GG_8419_c0_g1_i5,Trinity_GG_8419_c0_g1_i7,blat.proc3829877.chain_3733,blat.proc3829877.chain_3738	6
scaffold_1	alt_donor	5207312	5207313	+	asmbl_1710	none	blat.proc3829871.chain_391	1	STRG.323.1,STRG.323.2,STRG.323.3,blat.proc3829871.chain_390,blat.proc3829871.chain_392,blat.proc3829871.chain_394	6
scaffold_19	spliced_intron	12700478	12700502	-	asmbl_21743	none	STRG.22577.1	1	Trinity_GG_29576_c0_g1_i2,blat.proc3829897.chain_3315	2
scaffold_9	spliced_intron	9853059	9854248	+	asmbl_54249,asmbl_54252	none	STRG.11344.1,blat.proc3829877.chain_63,blat.proc3829877.chain_67	3	STRG.11344.2,Trinity_GG_6307_c0_g1_i5,blat.proc3829877.chain_64,blat.proc3829877.chain_66	4
scaffold_6	retained_exon	9956826	9957719	+	asmbl_47191	none	STRG.7828.1,blat.proc3829875.chain_189	2	STRG.7828.2,blat.proc3829875.chain_191	2
scaffold_9	alt_donor	18446645	18446646	-	asmbl_55676	none	STRG.11884.1,blat.proc3829893.chain_290	2	STRG.11884.2,blat.proc3829893.chain_289	2
scaffold_4	alternate_exon	16772163	16772272	-	asmbl_41960	none	STRG.5263.1	1	STRG.5263.2,blat.proc3829889.chain_1236	2
scaffold_20	skipped_exon	650710	652095	-	asmbl_26441	none	STRG.22754.2	1	STRG.22754.1,blat.proc3829897.chain_3535	2
scaffold_21	alt_acceptor	2525650	2525651	-	asmbl_27498	none	STRG.23870.1,blat.proc3829899.chain_955	2	STRG.23870.2,blat.proc3829899.chain_957	2
scaffold_8	retained_intron	4852233	4852322	+	asmbl_51849,asmbl_51850	none	blat.proc3829875.chain_2452,blat.proc3829875.chain_2455	2	STRG.9942.1,STRG.9942.2,blat.proc3829875.chain_2454,blat.proc3829875.chain_2456	4
scaffold_2	alt_donor	17923147	17923148	+	asmbl_25236	none	STRG.2677.1,blat.proc3829871.chain_2873	2	STRG.2677.2,blat.proc3829871.chain_2874	2
scaffold_1	spliced_intron	14426870	14427019	-	asmbl_928,asmbl_929,asmbl_930,asmbl_931	none	STRG.1042.1,STRG.1042.2,STRG.1042.3,blat.proc3829887.chain_961,blat.proc3829887.chain_962,blat.proc3829887.chain_963,blat.proc3829887.chain_964	7	Trinity_GG_17571_c0_g1_i3,blat.proc3829887.chain_960	2
scaffold_8	alt_acceptor	9122376	9122377	-	asmbl_52998,asmbl_53000	none	STRG.10160.2,STRG.10160.3,blat.proc3829891.chain_2327,blat.proc3829891.chain_2328,blat.proc3829891.chain_2330	5	STRG.10160.1	1
scaffold_14	alt_acceptor	13589081	13589082	+	asmbl_12467	none	STRG.17628.1,blat.proc3829879.chain_2270	2	STRG.17628.2	1
scaffold_4	retained_intron	10447539	10447632	-	asmbl_41595	none	blat.proc3829889.chain_837	1	STRG.4795.1,STRG.4795.2,STRG.4795.3,blat.proc3829889.chain_832,blat.proc3829889.chain_834,blat.proc3829889.chain_835,blat.proc3829889.chain_838,blat.proc3829889.chain_839	8
scaffold_23	starts_in_intron	2996156	2996156	-	asmbl_31488,asmbl_31491,asmbl_31496	none	Trinity_GG_31418_c0_g1_i1,blat.proc3829899.chain_2867,blat.proc3829899.chain_2868,blat.proc3829899.chain_2872	4	STRG.25729.1,STRG.25729.4,STRG.25729.5	3
scaffold_21	retained_intron	256225	256484	-	asmbl_27317	none	blat.proc3829899.chain_791,blat.proc3829899.chain_794	2	STRG.23718.1,STRG.23718.2,STRG.23718.3,STRG.23718.4,STRG.23718.5,STRG.23718.6,STRG.23718.7,Trinity_GG_30232_c0_g1_i4,blat.proc3829899.chain_782,blat.proc3829899.chain_783,blat.proc3829899.chain_785,blat.proc3829899.chain_786,blat.proc3829899.chain_787,blat.proc3829899.chain_788,blat.proc3829899.chain_790	15
scaffold_17	spliced_intron	2720917	2721238	+	asmbl_17821,asmbl_17823	none	STRG.20056.1,STRG.20056.2,Trinity_GG_10966_c0_g1_i2,blat.proc3829881.chain_843	4	Trinity_GG_10966_c0_g1_i1,blat.proc3829881.chain_844	2
scaffold_8	alternate_exon	9819257	9819333	+	asmbl_52094	none	STRG.10222.1,blat.proc3829875.chain_2663	2	blat.proc3829875.chain_2661	1
scaffold_11	skipped_exon	17085466	17087549	-	asmbl_7226,asmbl_7228	none	STRG.14362.2,blat.proc3829893.chain_2768,blat.proc3829893.chain_2771	3	STRG.14362.1,STRG.14362.4,STRG.14362.5,blat.proc3829893.chain_2767	4
scaffold_1	alt_acceptor	14422338	14422339	-	asmbl_923	none	STRG.1038.1	1	STRG.1038.2	1
scaffold_19	alternate_exon	11461674	11463105	-	asmbl_21595,asmbl_21597	none	STRG.22464.1,blat.proc3829897.chain_3112,blat.proc3829897.chain_3116	3	blat.proc3829897.chain_3111,blat.proc3829897.chain_3115	2
scaffold_2	starts_in_intron	6526882	6526882	+	asmbl_24505	none	Trinity_GG_1140_c0_g1_i2,blat.proc3829871.chain_2080	2	STRG.2023.1,Trinity_GG_1140_c0_g1_i1,blat.proc3829871.chain_2081	3
scaffold_17	ends_in_intron	9455310	9455310	+	asmbl_18208,asmbl_18210	none	blat.proc3829881.chain_1392,blat.proc3829881.chain_1396,blat.proc3829881.chain_1397	3	STRG.20557.1,STRG.20557.4,Trinity_GG_11275_c0_g1_i11,Trinity_GG_11275_c0_g1_i3,Trinity_GG_11275_c0_g1_i7,Trinity_GG_11275_c0_g1_i8,blat.proc3829881.chain_1391,blat.proc3829881.chain_1393,blat.proc3829881.chain_1394,blat.proc3829881.chain_1395	10
scaffold_6	alt_acceptor	9601613	9601614	+	asmbl_47169	none	blat.proc3829875.chain_176	1	STRG.7803.1,blat.proc3829875.chain_174	2
scaffold_14	alt_donor	7298482	7298483	+	asmbl_12130	none	blat.proc3829879.chain_1856	1	STRG.17153.1,STRG.17153.2,blat.proc3829879.chain_1853,blat.proc3829879.chain_1854,blat.proc3829879.chain_1855	5
scaffold_25	alt_acceptor	6297787	6297788	-	asmbl_34315,asmbl_34318	none	STRG.27515.1,blat.proc3829901.chain_819,blat.proc3829901.chain_820	3	Trinity_GG_32428_c0_g1_i4,blat.proc3829901.chain_822	2
scaffold_23	alternate_exon	5619881	5620023	-	asmbl_31647	none	Trinity_GG_31507_c0_g1_i1,blat.proc3829899.chain_3023	2	STRG.25917.3,STRG.25917.4,Trinity_GG_31507_c0_g2_i3,blat.proc3829899.chain_3025,blat.proc3829899.chain_3027	5
scaffold_22	alternate_exon	6124092	6127862	+	asmbl_29390	none	STRG.24955.4,blat.proc3829883.chain_1998	2	STRG.24955.7	1
scaffold_8	retained_intron	4350354	4350381	+	asmbl_51826	none	STRG.9913.1,Trinity_GG_5531_c0_g1_i1,Trinity_GG_5531_c0_g1_i4	3	STRG.9913.2	1
scaffold_3	alt_acceptor	8211785	8211786	-	asmbl_38982	none	STRG.3395.3	1	STRG.3395.2,blat.proc3829887.chain_3166	2
scaffold_15	spliced_intron	15908373	15908721	-	asmbl_15822,asmbl_15823,asmbl_15825,asmbl_15826,asmbl_15827	none	STRG.18963.1,Trinity_GG_27666_c0_g1_i1,Trinity_GG_27666_c0_g1_i4,Trinity_GG_27666_c0_g1_i5,Trinity_GG_27666_c0_g1_i8,Trinity_GG_27666_c0_g1_i9,blat.proc3829895.chain_3732,blat.proc3829895.chain_3734,blat.proc3829895.chain_3735,blat.proc3829895.chain_3736,blat.proc3829895.chain_3737	11	Trinity_GG_27666_c0_g1_i3,blat.proc3829895.chain_3733	2
scaffold_7	skipped_exon	1224787	1225948	+	asmbl_50466	none	STRG.8626.1,blat.proc3829875.chain_1025	2	STRG.8626.2,blat.proc3829875.chain_1024	2
scaffold_5	retained_intron	17210617	17210897	-	asmbl_46173,asmbl_46175	none	STRG.6885.2,blat.proc3829889.chain_2914	2	STRG.6885.1,blat.proc3829889.chain_2912,blat.proc3829889.chain_2913,blat.proc3829889.chain_2915	4
scaffold_22	alt_donor	10945269	10945270	-	asmbl_30402	none	blat.proc3829899.chain_2453	1	blat.proc3829899.chain_2455	1
scaffold_8	retained_intron	11851123	11851344	+	asmbl_52273,asmbl_52280,asmbl_52281	none	blat.proc3829875.chain_2966,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973	3	STRG.10382.2,STRG.10382.3,blat.proc3829875.chain_2967,blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970,blat.proc3829875.chain_2971,blat.proc3829875.chain_2975,blat.proc3829875.chain_2976,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978,blat.proc3829875.chain_2979,blat.proc3829875.chain_2980	13
scaffold_23	retained_intron	2164190	2164417	-	asmbl_31420,asmbl_31421	none	STRG.25669.2,STRG.25669.5	2	STRG.25669.4,STRG.25669.7	2
scaffold_2	starts_in_intron	1597853	1597853	+	asmbl_24240	none	blat.proc3829871.chain_1667	1	STRG.1628.1,STRG.1628.2,STRG.1628.3,STRG.1628.4,blat.proc3829871.chain_1666,blat.proc3829871.chain_1668,blat.proc3829871.chain_1669	7
scaffold_18	retained_intron	6425016	6425279	+	asmbl_20708	none	Trinity_GG_11792_c0_g1_i3,blat.proc3829881.chain_2322	2	STRG.21358.1,STRG.21358.2,blat.proc3829881.chain_2320	3
scaffold_14	skipped_exon	7460431	7460908	-	asmbl_13195	none	blat.proc3829895.chain_1853	1	STRG.17173.4	1
scaffold_12	skipped_exon	10187619	10188527	-	asmbl_7859,asmbl_7865	none	STRG.14979.1,blat.proc3829893.chain_3401,blat.proc3829893.chain_3403	3	STRG.14979.5,STRG.14979.6,blat.proc3829893.chain_3400	3
scaffold_6	retained_intron	13917524	13917641	-	asmbl_48897,asmbl_48898	none	STRG.8132.4,blat.proc3829891.chain_440	2	STRG.8132.1,STRG.8132.2,STRG.8132.3,STRG.8132.5,blat.proc3829891.chain_438,blat.proc3829891.chain_439	6
scaffold_1	alt_donor	19006360	19006361	+	asmbl_2559	none	STRG.1322.1	1	STRG.1322.2,STRG.1322.3	2
scaffold_26	starts_in_intron	5891047	5891047	+	asmbl_35579	none	STRG.28280.3	1	STRG.28280.1,blat.proc3829885.chain_1312,blat.proc3829885.chain_1314	3
scaffold_14	retained_intron	405059	405204	+	asmbl_11724	none	STRG.16722.7,Trinity_GG_9219_c0_g1_i17,blat.proc3829879.chain_1472	3	STRG.16722.1,STRG.16722.3,STRG.16722.4,Trinity_GG_9219_c0_g1_i21,Trinity_GG_9219_c0_g1_i3,Trinity_GG_9219_c0_g1_i6,blat.proc3829879.chain_1465,blat.proc3829879.chain_1468,blat.proc3829879.chain_1474	9
scaffold_28	starts_in_intron	2925632	2925632	+	asmbl_38118	none	blat.proc3829885.chain_2548	1	STRG.29465.1,blat.proc3829885.chain_2547	2
scaffold_20	alternate_exon	11928981	11929027	+	asmbl_26259	none	STRG.23681.2	1	STRG.23681.1	1
scaffold_15	alt_acceptor	12304560	12304561	+	asmbl_14492	none	STRG.18670.1,Trinity_GG_10243_c0_g1_i2,blat.proc3829879.chain_3250	3	STRG.18670.2,Trinity_GG_10243_c0_g1_i1,blat.proc3829879.chain_3251	3
scaffold_14	alt_acceptor	15947031	15947032	+	asmbl_12634,asmbl_12635	none	STRG.17824.1,STRG.17824.3	2	STRG.17824.2,blat.proc3829879.chain_2528	2
scaffold_14	spliced_intron	1067639	1067750	+	asmbl_11767,asmbl_11769,asmbl_11770,asmbl_11771	none	STRG.16754.2,blat.proc3829879.chain_1439,blat.proc3829879.chain_1440,blat.proc3829879.chain_1441	4	STRG.16754.1,STRG.16754.3,STRG.16754.4,STRG.16754.5,blat.proc3829879.chain_1436,blat.proc3829879.chain_1442	6
scaffold_13	skipped_exon	398875	400388	-	asmbl_9303	none	Trinity_GG_25691_c0_g1_i10,blat.proc3829895.chain_228	2	STRG.15428.1,STRG.15428.2,STRG.15428.3,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i7,Trinity_GG_25691_c0_g1_i8,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_220,blat.proc3829895.chain_221,blat.proc3829895.chain_222,blat.proc3829895.chain_224,blat.proc3829895.chain_226,blat.proc3829895.chain_230,blat.proc3829895.chain_232,blat.proc3829895.chain_233	17
scaffold_3	alternate_exon	4288040	4288516	+	asmbl_39958	none	Trinity_GG_1770_c0_g2_i4,blat.proc3829871.chain_3293	2	STRG.3132.1	1
scaffold_22	alt_acceptor	7437544	7437545	-	asmbl_30163,asmbl_30165	none	STRG.25066.1,STRG.25066.2,blat.proc3829899.chain_2153,blat.proc3829899.chain_2154	4	STRG.25066.3,STRG.25066.4,STRG.25066.5,blat.proc3829899.chain_2152,blat.proc3829899.chain_2155	5
scaffold_13	ends_in_intron	7113264	7113264	+	asmbl_11004	none	blat.proc3829879.chain_719	1	STRG.15995.1,blat.proc3829879.chain_718	2
scaffold_14	alt_acceptor	15693744	15693745	-	asmbl_13722	none	blat.proc3829895.chain_2522	1	STRG.17796.2,STRG.17796.3	2
scaffold_3	alt_acceptor	3085016	3085017	+	asmbl_39890	none	STRG.3053.1	1	STRG.3053.2	1
scaffold_26	spliced_intron	4925304	4925435	-	asmbl_34877	none	STRG.28190.2	1	STRG.28190.1,Trinity_GG_32785_c0_g1_i1,blat.proc3829901.chain_1379	3
scaffold_18	alt_acceptor	9259474	9259475	-	asmbl_20095	none	STRG.21559.3	1	STRG.21559.4	1
scaffold_11	retained_exon	8102954	8103388	+	asmbl_5693	none	STRG.13811.2,blat.proc3829877.chain_2301	2	STRG.13811.4	1
scaffold_4	ends_in_intron	12346218	12346218	-	asmbl_41648	none	blat.proc3829889.chain_899	1	STRG.4864.1	1
scaffold_6	spliced_intron	12484088	12484230	+	asmbl_47338,asmbl_47340,asmbl_47341	none	STRG.8000.1,STRG.8000.2,STRG.8000.4,Trinity_GG_4381_c0_g1_i1,Trinity_GG_4381_c0_g1_i2,blat.proc3829875.chain_392,blat.proc3829875.chain_393	7	STRG.8000.3,Trinity_GG_4381_c0_g1_i3,blat.proc3829875.chain_394	3
scaffold_12	alt_acceptor	13029850	13029851	-	asmbl_8033,asmbl_8035	none	STRG.15173.1,STRG.15173.3,blat.proc3829893.chain_3571	3	STRG.15173.2,blat.proc3829893.chain_3570	2
scaffold_9	alt_acceptor	8395972	8395973	+	asmbl_54157	none	STRG.11249.1,blat.proc3829877.chain_17	2	STRG.11249.2,STRG.11249.3,STRG.11249.4,STRG.11249.5,blat.proc3829877.chain_18,blat.proc3829877.chain_19,blat.proc3829877.chain_20	7
scaffold_8	alternate_exon	11272633	11272686	+	asmbl_52199	none	STRG.10338.1,Trinity_GG_5734_c0_g1_i2,blat.proc3829875.chain_2817	3	Trinity_GG_5734_c0_g1_i1,blat.proc3829875.chain_2818	2
scaffold_7	alt_acceptor	8510078	8510079	+	asmbl_50887	none	STRG.9068.1,blat.proc3829875.chain_1527	2	STRG.9068.5,blat.proc3829875.chain_1526	2
scaffold_15	skipped_exon	12008633	12009572	-	asmbl_15569	none	STRG.18635.2,blat.proc3829895.chain_3341	2	STRG.18635.1,blat.proc3829895.chain_3343	2
scaffold_3	starts_in_intron	14012604	14012604	+	asmbl_40448	none	Trinity_GG_2072_c0_g1_i2,blat.proc3829873.chain_95	2	STRG.3747.1,Trinity_GG_2072_c0_g1_i3,Trinity_GG_2072_c0_g1_i4,blat.proc3829873.chain_94,blat.proc3829873.chain_98	5
scaffold_3	alternate_exon	3248163	3251992	+	asmbl_39898	none	STRG.3087.4,Trinity_GG_1771_c0_g1_i6,blat.proc3829871.chain_3308	3	STRG.3087.3,Trinity_GG_1771_c0_g1_i2,blat.proc3829871.chain_3304,blat.proc3829871.chain_3307	4
scaffold_20	alternate_exon	11929379	11933128	+	asmbl_26258	none	STRG.23681.1	1	STRG.23681.2	1
scaffold_4	spliced_intron	3211226	3211758	-	asmbl_41151	none	STRG.4241.2	1	STRG.4241.1,Trinity_GG_19341_c0_g1_i2,Trinity_GG_19341_c0_g1_i3,blat.proc3829889.chain_286,blat.proc3829889.chain_287	5
scaffold_4	alt_acceptor	19587578	19587579	-	asmbl_42206	none	STRG.5543.1,blat.proc3829889.chain_1639	2	STRG.5543.2,blat.proc3829889.chain_1641	2
scaffold_14	retained_intron	1602723	1602820	-	asmbl_12881	none	STRG.16790.3,Trinity_GG_26418_c0_g1_i2,blat.proc3829895.chain_1494	3	STRG.16790.1,Trinity_GG_26418_c0_g1_i5,blat.proc3829895.chain_1497	3
scaffold_12	alt_acceptor	12801723	12801724	+	asmbl_8988	none	STRG.15161.1,blat.proc3829877.chain_3580	2	STRG.15161.2,blat.proc3829877.chain_3578	2
scaffold_4	spliced_intron	3237335	3237419	-	asmbl_41164,asmbl_41168	none	STRG.4247.1,STRG.4247.2,blat.proc3829889.chain_367	3	Trinity_GG_19386_c0_g1_i6,blat.proc3829889.chain_369,blat.proc3829889.chain_371	3
scaffold_10	alt_acceptor	8897219	8897220	-	asmbl_3533,asmbl_3534,asmbl_3536,asmbl_3540	none	STRG.12629.1,blat.proc3829893.chain_1129,blat.proc3829893.chain_1130,blat.proc3829893.chain_1133	4	blat.proc3829893.chain_1125,blat.proc3829893.chain_1127,blat.proc3829893.chain_1132,blat.proc3829893.chain_1134	4
scaffold_13	alternate_exon	11380238	11382362	-	asmbl_10052	none	STRG.16287.1,blat.proc3829895.chain_1034	2	Trinity_GG_26140_c0_g1_i7,blat.proc3829895.chain_1030	2
scaffold_19	retained_intron	12822074	12822167	-	asmbl_21759	none	blat.proc3829897.chain_3274	1	STRG.22593.1,STRG.22593.2,STRG.22593.3,blat.proc3829897.chain_3275,blat.proc3829897.chain_3277,blat.proc3829897.chain_3278,blat.proc3829897.chain_3279,blat.proc3829897.chain_3280	8
scaffold_15	retained_intron	15355010	15355115	+	asmbl_14706,asmbl_14707,asmbl_14709	none	STRG.18909.1,Trinity_GG_10368_c0_g1_i4,Trinity_GG_10368_c0_g1_i9,blat.proc3829879.chain_3501,blat.proc3829879.chain_3502,blat.proc3829879.chain_3503	6	STRG.18909.3,Trinity_GG_10368_c0_g1_i7,blat.proc3829879.chain_3500,blat.proc3829879.chain_3505	4
scaffold_9	retained_intron	8396091	8396249	+	asmbl_54160	none	blat.proc3829877.chain_21	1	STRG.11249.1,STRG.11249.2,STRG.11249.3,STRG.11249.4,STRG.11249.5,blat.proc3829877.chain_17,blat.proc3829877.chain_18,blat.proc3829877.chain_19,blat.proc3829877.chain_20	9
scaffold_7	starts_in_intron	12455845	12455845	-	asmbl_50048	none	Trinity_GG_22282_c0_g2_i1,blat.proc3829891.chain_1603	2	STRG.9342.1,STRG.9342.2,STRG.9342.4,STRG.9342.5,blat.proc3829891.chain_1602	5
scaffold_9	spliced_intron	16570130	16570300	+	asmbl_54572,asmbl_54574,asmbl_54576,asmbl_54578,asmbl_54579,asmbl_54580	none	STRG.11798.1,STRG.11798.2,Trinity_GG_6586_c0_g1_i14,Trinity_GG_6586_c0_g1_i15,Trinity_GG_6586_c0_g1_i21,Trinity_GG_6586_c0_g1_i6,blat.proc3829877.chain_551,blat.proc3829877.chain_553,blat.proc3829877.chain_554,blat.proc3829877.chain_556,blat.proc3829877.chain_558	11	Trinity_GG_6586_c0_g1_i10,Trinity_GG_6586_c0_g1_i23,Trinity_GG_6586_c0_g1_i5,blat.proc3829877.chain_552,blat.proc3829877.chain_555,blat.proc3829877.chain_557	6
scaffold_17	retained_intron	13957425	13957742	+	asmbl_18486	none	Trinity_GG_11466_c0_g1_i2,blat.proc3829881.chain_1708	2	STRG.20860.1,Trinity_GG_11466_c0_g1_i1,Trinity_GG_11466_c0_g1_i3,blat.proc3829881.chain_1706,blat.proc3829881.chain_1707	5
scaffold_1	spliced_intron	5740198	5740435	+	asmbl_1764,asmbl_1769,asmbl_1770,asmbl_1771	none	STRG.382.2,blat.proc3829871.chain_370,blat.proc3829871.chain_371,blat.proc3829871.chain_373,blat.proc3829871.chain_375	5	blat.proc3829871.chain_372	1
scaffold_23	retained_intron	248951	249926	-	asmbl_31289	none	STRG.25528.1,blat.proc3829899.chain_2628	2	STRG.25528.3,blat.proc3829899.chain_2629	2
scaffold_10	alternate_exon	1164168	1164348	+	asmbl_4193	none	STRG.11995.2,blat.proc3829877.chain_704	2	STRG.11995.1,STRG.11995.3,blat.proc3829877.chain_705,blat.proc3829877.chain_706	4
scaffold_20	ends_in_intron	9726762	9726762	+	asmbl_26043	none	blat.proc3829883.chain_613	1	blat.proc3829883.chain_614	1
scaffold_2	spliced_intron	8055011	8055080	-	asmbl_23323,asmbl_23324,asmbl_23325,asmbl_23326,asmbl_23327	none	STRG.2095.1,STRG.2095.2,STRG.2095.3,STRG.2095.4,STRG.2095.5,blat.proc3829887.chain_2005,blat.proc3829887.chain_2006,blat.proc3829887.chain_2007,blat.proc3829887.chain_2008	9	blat.proc3829887.chain_2009	1
scaffold_24	spliced_intron	5948199	5949651	+	asmbl_32262,asmbl_32270,asmbl_32271,asmbl_32272,asmbl_32274,asmbl_32275,asmbl_32276,asmbl_32278,asmbl_32279,asmbl_32280,asmbl_32281,asmbl_32282	none	STRG.26645.1,blat.proc3829883.chain_3537,blat.proc3829883.chain_3539,blat.proc3829883.chain_3541,blat.proc3829883.chain_3542,blat.proc3829883.chain_3543,blat.proc3829883.chain_3544,blat.proc3829883.chain_3545,blat.proc3829883.chain_3546,blat.proc3829883.chain_3547,blat.proc3829883.chain_3548,blat.proc3829883.chain_3549	12	Trinity_GG_14738_c0_g1_i18,blat.proc3829883.chain_3540	2
scaffold_26	retained_exon	6351157	6351208	-	asmbl_34954	none	STRG.28315.5,blat.proc3829901.chain_1406	2	STRG.28315.4	1
scaffold_6	retained_intron	8580963	8581085	+	asmbl_47085,asmbl_47087,asmbl_47089	none	STRG.7732.1,blat.proc3829875.chain_111,blat.proc3829875.chain_112	3	STRG.7732.2,STRG.7732.3	2
scaffold_1	starts_in_intron	5705172	5705172	+	asmbl_1751	none	blat.proc3829871.chain_432	1	STRG.369.1,blat.proc3829871.chain_429,blat.proc3829871.chain_431,blat.proc3829871.chain_433	4
scaffold_9	spliced_intron	15394570	15395108	+	asmbl_54543,asmbl_54544,asmbl_54548,asmbl_54549	none	STRG.11731.1,STRG.11731.2,Trinity_GG_6522_c0_g1_i4,Trinity_GG_6522_c0_g1_i5,Trinity_GG_6522_c0_g1_i6,blat.proc3829877.chain_441,blat.proc3829877.chain_443,blat.proc3829877.chain_444	8	STRG.11731.3,Trinity_GG_6522_c0_g1_i1,blat.proc3829877.chain_442	3
scaffold_20	retained_intron	11285643	11285794	+	asmbl_26180,asmbl_26182	none	STRG.23619.1,STRG.23619.2,blat.proc3829883.chain_753	3	STRG.23619.3,Trinity_GG_13069_c0_g1_i2,blat.proc3829883.chain_752	3
scaffold_7	alternate_exon	17339667	17339702	-	asmbl_50248	none	STRG.9603.4	1	STRG.9603.1,STRG.9603.2,STRG.9603.3	3
scaffold_8	alternate_exon	8187435	8187671	-	asmbl_52936,asmbl_52939	none	STRG.10094.2,STRG.10094.3,blat.proc3829891.chain_2274	3	STRG.10094.4,blat.proc3829891.chain_2275	2
scaffold_2	alt_acceptor	4787957	4787958	+	asmbl_24407,asmbl_24408	none	STRG.1897.2,STRG.1897.5	2	STRG.1897.1,STRG.1897.3,STRG.1897.4,blat.proc3829871.chain_1851,blat.proc3829871.chain_1852,blat.proc3829871.chain_1853,blat.proc3829871.chain_1854	7
scaffold_2	alt_donor	6517409	6517410	+	asmbl_24499	none	STRG.2022.3	1	STRG.2022.1,STRG.2022.2,STRG.2022.4,Trinity_GG_1139_c0_g1_i2	4
scaffold_18	spliced_intron	13150203	13150282	-	asmbl_20193	none	STRG.21746.3	1	STRG.21746.2	1
scaffold_5	alt_acceptor	9579551	9579552	-	asmbl_45671	none	STRG.6266.1	1	blat.proc3829889.chain_2352	1
scaffold_21	retained_exon	5280676	5280791	-	asmbl_27665	none	STRG.24056.1,blat.proc3829899.chain_1144	2	STRG.24056.2,blat.proc3829899.chain_1146	2
scaffold_6	alt_donor	11655	11656	-	asmbl_47955	none	blat.proc3829889.chain_3048	1	STRG.7049.1	1
scaffold_5	spliced_intron	18758085	18758276	-	asmbl_46249	none	STRG.6996.1,blat.proc3829889.chain_2994	2	blat.proc3829889.chain_2993,blat.proc3829889.chain_2995	2
scaffold_1	alt_donor	18032470	18032471	-	asmbl_1078,asmbl_1079	none	STRG.1267.3,Trinity_GG_17699_c0_g1_i2,blat.proc3829887.chain_1167	3	STRG.1267.1,STRG.1267.2,Trinity_GG_17699_c0_g1_i1,Trinity_GG_17699_c0_g1_i5,blat.proc3829887.chain_1166,blat.proc3829887.chain_1168	6
scaffold_11	starts_in_intron	4837256	4837256	+	asmbl_5488	none	Trinity_GG_7451_c0_g1_i1,blat.proc3829877.chain_2030	2	STRG.13567.1,blat.proc3829877.chain_2031	2
scaffold_18	skipped_exon	11912305	11913975	+	asmbl_20978	none	STRG.21685.1	1	STRG.21685.2,blat.proc3829881.chain_2645	2
scaffold_15	alt_donor	11399364	11399365	-	asmbl_15513,asmbl_15516	none	STRG.18596.4,blat.proc3829895.chain_3372	2	STRG.18596.1,STRG.18596.2,STRG.18596.3,STRG.18596.5,STRG.18596.6,blat.proc3829895.chain_3373,blat.proc3829895.chain_3374,blat.proc3829895.chain_3375	8
scaffold_9	starts_in_intron	10913422	10913422	+	asmbl_54297	none	Trinity_GG_6358_c2_g1_i2,blat.proc3829877.chain_188	2	Trinity_GG_6358_c2_g1_i1,blat.proc3829877.chain_189	2
scaffold_7	starts_in_intron	1234374	1234374	+	asmbl_50469	none	Trinity_GG_4740_c0_g1_i13,Trinity_GG_4740_c0_g1_i14,blat.proc3829875.chain_1044,blat.proc3829875.chain_1045,blat.proc3829875.chain_1048	5	STRG.8627.3,STRG.8627.7,STRG.8627.9,Trinity_GG_4740_c0_g1_i16,blat.proc3829875.chain_1042	5
scaffold_12	alternate_exon	14256647	14256758	+	asmbl_9043	none	STRG.15246.3	1	STRG.15246.1,Trinity_GG_8401_c0_g1_i1,blat.proc3829877.chain_3698	3
scaffold_23	spliced_intron	5709650	5709748	-	asmbl_31658	none	STRG.25921.1	1	Trinity_GG_31520_c0_g1_i2,blat.proc3829899.chain_3046	2
scaffold_18	starts_in_intron	3097273	3097273	-	asmbl_19781	none	blat.proc3829897.chain_2012	1	STRG.21147.1,STRG.21147.2	2
scaffold_10	retained_intron	6869034	6869156	-	asmbl_3425	none	blat.proc3829893.chain_990	1	STRG.12505.1,blat.proc3829893.chain_991,blat.proc3829893.chain_994,blat.proc3829893.chain_996,blat.proc3829893.chain_997,blat.proc3829893.chain_998,blat.proc3829893.chain_999	7
scaffold_9	starts_in_intron	3376168	3376168	+	asmbl_53871	none	Trinity_GG_6077_c0_g2_i1,Trinity_GG_6077_c0_g2_i2,blat.proc3829875.chain_3403,blat.proc3829875.chain_3404	4	STRG.10936.1,blat.proc3829875.chain_3401,blat.proc3829875.chain_3402	3
scaffold_19	starts_in_intron	12075445	12075445	+	asmbl_22545	none	blat.proc3829881.chain_3419	1	STRG.22520.1,blat.proc3829881.chain_3418	2
scaffold_15	retained_exon	4133428	4133547	-	asmbl_15136	none	STRG.18148.2,blat.proc3829895.chain_2889	2	STRG.18148.1	1
scaffold_1	alt_acceptor	13634834	13634835	+	asmbl_2294	none	STRG.978.1	1	STRG.978.2	1
scaffold_16	alt_donor	8027307	8027308	-	asmbl_16392,asmbl_16395	none	STRG.19429.1,STRG.19429.2,blat.proc3829897.chain_471	3	Trinity_GG_27922_c0_g2_i1,blat.proc3829897.chain_474	2
scaffold_10	ends_in_intron	3396273	3396273	-	asmbl_3118	none	blat.proc3829893.chain_625	1	STRG.12162.1,Trinity_GG_23800_c0_g1_i1,Trinity_GG_23800_c0_g1_i3,blat.proc3829893.chain_626,blat.proc3829893.chain_627	5
scaffold_17	alternate_exon	9023378	9023436	-	asmbl_19184	none	STRG.20518.1	1	blat.proc3829897.chain_1466	1
scaffold_1	retained_intron	10950202	10950350	+	asmbl_2026,asmbl_2028,asmbl_2029,asmbl_2030	none	STRG.713.2,STRG.713.4,blat.proc3829871.chain_748,blat.proc3829871.chain_750,blat.proc3829871.chain_753,blat.proc3829871.chain_754	6	blat.proc3829871.chain_752	1
scaffold_13	retained_intron	3733773	3733964	+	asmbl_10716,asmbl_10717	none	blat.proc3829879.chain_389,blat.proc3829879.chain_393	2	STRG.15686.1,blat.proc3829879.chain_394	2
scaffold_12	starts_in_intron	14048620	14048620	-	asmbl_8098	none	blat.proc3829893.chain_3645	1	STRG.15217.1	1
scaffold_6	alt_acceptor	11484869	11484870	+	asmbl_47263,asmbl_47264,asmbl_47267,asmbl_47268,asmbl_47269	none	STRG.7936.1,STRG.7936.2,STRG.7936.4,blat.proc3829875.chain_299,blat.proc3829875.chain_300,blat.proc3829875.chain_301,blat.proc3829875.chain_304	7	STRG.7936.3,blat.proc3829875.chain_302	2
scaffold_6	retained_intron	8172579	8172708	-	asmbl_48471,asmbl_48472,asmbl_48473	none	Trinity_GG_21366_c0_g1_i13,Trinity_GG_21366_c0_g1_i6,blat.proc3829889.chain_3718,blat.proc3829889.chain_3720,blat.proc3829889.chain_3721,blat.proc3829889.chain_3723	6	STRG.7691.1,Trinity_GG_21366_c0_g1_i3,blat.proc3829889.chain_3717,blat.proc3829889.chain_3719	4
scaffold_6	retained_exon	3056807	3056923	+	asmbl_46743,asmbl_46744,asmbl_46746,asmbl_46750,asmbl_46751,asmbl_46752	none	STRG.7308.1,STRG.7308.2,blat.proc3829873.chain_3438,blat.proc3829873.chain_3440,blat.proc3829873.chain_3444,blat.proc3829873.chain_3445,blat.proc3829873.chain_3446	7	blat.proc3829873.chain_3441	1
scaffold_16	alt_donor	4638519	4638520	+	asmbl_16985	none	STRG.19238.2	1	STRG.19238.1,blat.proc3829881.chain_55	2
scaffold_3	ends_in_intron	14319586	14319586	-	asmbl_39304	none	Trinity_GG_19098_c1_g1_i4,blat.proc3829887.chain_3564	2	STRG.3769.1,STRG.3769.2,Trinity_GG_19098_c1_g1_i2,blat.proc3829887.chain_3565	4
scaffold_15	retained_intron	11402046	11402524	-	asmbl_15511,asmbl_15515	none	STRG.18596.2,blat.proc3829895.chain_3373	2	STRG.18596.5,blat.proc3829895.chain_3374	2
scaffold_6	spliced_intron	8174054	8174789	-	asmbl_48472,asmbl_48473,asmbl_48475,asmbl_48476,asmbl_48479,asmbl_48480	none	STRG.7691.1,STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3716,blat.proc3829889.chain_3719,blat.proc3829889.chain_3720,blat.proc3829889.chain_3721,blat.proc3829889.chain_3724	8	Trinity_GG_21366_c0_g1_i14,Trinity_GG_21366_c0_g1_i3,blat.proc3829889.chain_3717,blat.proc3829889.chain_3722	4
scaffold_13	alternate_exon	366022	366248	-	asmbl_9280	none	Trinity_GG_25666_c0_g1_i1,blat.proc3829895.chain_162	2	STRG.15426.4,Trinity_GG_25666_c0_g1_i10,blat.proc3829895.chain_156	3
scaffold_17	alt_acceptor	6798467	6798468	+	asmbl_18001	none	STRG.20322.1,blat.proc3829881.chain_1106	2	STRG.20322.2,blat.proc3829881.chain_1107	2
scaffold_1	alternate_exon	14363432	14363603	-	asmbl_911,asmbl_914	none	STRG.1033.1,blat.proc3829887.chain_885,blat.proc3829887.chain_887	3	STRG.1033.2,STRG.1033.3,blat.proc3829887.chain_884	3
scaffold_8	ends_in_intron	18543047	18543047	+	asmbl_52558	none	blat.proc3829875.chain_3173	1	STRG.10744.1,STRG.10744.2,blat.proc3829875.chain_3174,blat.proc3829875.chain_3175	4
scaffold_20	retained_exon	10671489	10671530	+	asmbl_26132,asmbl_26135	none	STRG.23587.1,blat.proc3829883.chain_730,blat.proc3829883.chain_731	3	STRG.23587.2	1
scaffold_20	alternate_exon	239962	240099	-	asmbl_26406	none	STRG.22700.3	1	STRG.22700.2	1
scaffold_6	alt_donor	601235	601236	-	asmbl_47991,asmbl_47994	none	STRG.7116.1,STRG.7116.2,blat.proc3829889.chain_3098	3	STRG.7116.3,STRG.7116.4,STRG.7116.5,blat.proc3829889.chain_3099	4
scaffold_21	alternate_exon	691873	694384	+	asmbl_28305	none	STRG.23742.2	1	STRG.23742.4	1
scaffold_1	spliced_intron	7814114	7814497	+	asmbl_1918	none	STRG.541.2,Trinity_GG_344_c0_g1_i2,blat.proc3829871.chain_605	3	STRG.541.1,blat.proc3829871.chain_606	2
scaffold_15	starts_in_intron	8598740	8598740	-	asmbl_15366	none	blat.proc3829895.chain_3156	1	STRG.18398.1,blat.proc3829895.chain_3155	2
scaffold_16	alt_acceptor	7546999	7547000	+	asmbl_17148	none	STRG.19394.2	1	STRG.19394.1,blat.proc3829881.chain_238	2
scaffold_4	retained_intron	4449410	4449595	+	asmbl_42605	none	Trinity_GG_2435_c1_g1_i2,blat.proc3829873.chain_766	2	STRG.4349.1,Trinity_GG_2435_c1_g1_i1,blat.proc3829873.chain_765	3
scaffold_19	starts_in_intron	11721814	11721814	-	asmbl_21645	none	STRG.22489.1,blat.proc3829897.chain_3175	2	STRG.22489.2,blat.proc3829897.chain_3177	2
scaffold_5	spliced_intron	8791720	8791899	+	asmbl_44233,asmbl_44234	none	STRG.6209.1,STRG.6209.2,blat.proc3829873.chain_2346,blat.proc3829873.chain_2349	4	blat.proc3829873.chain_2350	1
scaffold_11	retained_intron	4666033	4666246	+	asmbl_5459	none	blat.proc3829877.chain_1981,blat.proc3829877.chain_1982	2	STRG.13546.2,STRG.13546.4,blat.proc3829877.chain_1979	3
scaffold_14	retained_exon	14148983	14149024	+	asmbl_12511,asmbl_12515	none	STRG.17676.3,STRG.17676.5	2	STRG.17676.2,blat.proc3829879.chain_2283,blat.proc3829879.chain_2284	3
scaffold_13	alt_donor	6949232	6949233	-	asmbl_9778	none	STRG.15968.3	1	STRG.15968.2,STRG.15968.4,STRG.15968.5	3
scaffold_3	starts_in_intron	17945793	17945793	-	asmbl_39526	none	STRG.4011.1,blat.proc3829889.chain_40	2	blat.proc3829889.chain_41	1
scaffold_10	skipped_exon	5392562	5395407	-	asmbl_3278	none	blat.proc3829893.chain_824	1	STRG.12357.1,STRG.12357.2,blat.proc3829893.chain_823,blat.proc3829893.chain_825	4
scaffold_1	alt_donor	20135348	20135349	-	asmbl_1171,asmbl_1174	none	STRG.1381.3,STRG.1381.5	2	STRG.1381.1,STRG.1381.2,STRG.1381.4	3
scaffold_2	alt_acceptor	3899363	3899364	+	asmbl_24341	none	blat.proc3829871.chain_1841	1	STRG.1831.1,STRG.1831.2,STRG.1831.3,blat.proc3829871.chain_1839,blat.proc3829871.chain_1840,blat.proc3829871.chain_1842,blat.proc3829871.chain_1843	7
scaffold_20	alt_donor	1489700	1489701	+	asmbl_25571,asmbl_25573	none	STRG.22855.2,STRG.22855.5	2	STRG.22855.1,STRG.22855.3	2
scaffold_17	alternate_exon	787131	787228	+	asmbl_17704	none	STRG.19917.1	1	STRG.19917.2,blat.proc3829881.chain_713	2
scaffold_26	spliced_intron	6350865	6351295	-	asmbl_34957	none	STRG.28315.4	1	STRG.28315.1,blat.proc3829901.chain_1401	2
scaffold_16	ends_in_intron	436475	436475	-	asmbl_16038	none	Trinity_GG_27679_c2_g2_i1	1	STRG.19039.1	1
scaffold_17	spliced_intron	1087302	1087367	-	asmbl_18716	none	STRG.19938.1	1	blat.proc3829897.chain_833	1
scaffold_16	alt_donor	3706689	3706690	+	asmbl_16938	none	blat.proc3829881.chain_34	1	STRG.19166.2	1
scaffold_2	spliced_intron	14560203	14560372	+	asmbl_24982,asmbl_24985,asmbl_24986,asmbl_24987,asmbl_24989	none	STRG.2454.1,STRG.2454.2,STRG.2454.3,STRG.2454.4,blat.proc3829871.chain_2570	5	blat.proc3829871.chain_2565	1
scaffold_21	starts_in_intron	5520366	5520366	-	asmbl_27690	none	blat.proc3829899.chain_1159	1	blat.proc3829899.chain_1154	1
scaffold_13	starts_in_intron	14180131	14180131	-	asmbl_10139	none	blat.proc3829895.chain_1183	1	STRG.16447.1,STRG.16447.2,blat.proc3829895.chain_1184,blat.proc3829895.chain_1185	4
scaffold_21	starts_in_intron	3769832	3769832	-	asmbl_27563	none	STRG.23958.3	1	STRG.23958.2	1
scaffold_21	retained_intron	2475393	2475501	-	asmbl_27482	none	STRG.23863.2,blat.proc3829899.chain_898,blat.proc3829899.chain_901	3	STRG.23863.1,STRG.23863.4,blat.proc3829899.chain_899,blat.proc3829899.chain_902,blat.proc3829899.chain_904,blat.proc3829899.chain_906	6
scaffold_12	retained_intron	10187010	10187126	-	asmbl_7867	none	Trinity_GG_25385_c0_g1_i10,blat.proc3829893.chain_3399	2	STRG.14979.1,STRG.14979.2,STRG.14979.3,STRG.14979.4,STRG.14979.5,STRG.14979.6,blat.proc3829893.chain_3400,blat.proc3829893.chain_3401,blat.proc3829893.chain_3402,blat.proc3829893.chain_3403,blat.proc3829893.chain_3404,blat.proc3829893.chain_3405	12
scaffold_18	alt_acceptor	4124741	4124742	+	asmbl_20524,asmbl_20527	none	STRG.21203.2,STRG.21203.3,Trinity_GG_11620_c0_g1_i2,blat.proc3829881.chain_1991	4	STRG.21203.1,Trinity_GG_11620_c0_g1_i1,Trinity_GG_11620_c0_g1_i3,blat.proc3829881.chain_1990,blat.proc3829881.chain_1992	5
scaffold_22	retained_exon	2388115	2388156	+	asmbl_29232,asmbl_29235,asmbl_29236	none	STRG.24765.1,blat.proc3829883.chain_1746,blat.proc3829883.chain_1747	3	blat.proc3829883.chain_1745	1
scaffold_2	retained_intron	7895023	7895182	+	asmbl_24630	none	Trinity_GG_1187_c0_g1_i12,blat.proc3829871.chain_2190	2	STRG.2086.1,STRG.2086.2,STRG.2086.3,blat.proc3829871.chain_2189,blat.proc3829871.chain_2191,blat.proc3829871.chain_2193,blat.proc3829871.chain_2194,blat.proc3829871.chain_2195,blat.proc3829871.chain_2196,blat.proc3829871.chain_2199	10
scaffold_22	starts_in_intron	4212630	4212630	-	asmbl_29976	none	blat.proc3829899.chain_1939	1	STRG.24820.1,blat.proc3829899.chain_1938	2
scaffold_14	starts_in_intron	15232442	15232442	+	asmbl_12561	none	STRG.17734.3,Trinity_GG_9753_c1_g1_i1,blat.proc3829879.chain_2405	3	STRG.17734.2	1
scaffold_5	alternate_exon	17194834	17194965	+	asmbl_44804	none	STRG.6883.1	1	STRG.6883.3,blat.proc3829873.chain_2980	2
scaffold_5	alt_donor	11991388	11991389	-	asmbl_45815	none	STRG.6447.5	1	blat.proc3829889.chain_2522	1
scaffold_20	retained_intron	11948483	11948717	-	asmbl_27132	none	STRG.23687.3,blat.proc3829899.chain_604	2	blat.proc3829899.chain_605,blat.proc3829899.chain_606	2
scaffold_14	starts_in_intron	11136390	11136390	-	asmbl_13432	none	blat.proc3829895.chain_2147	1	STRG.17433.1,STRG.17433.2,blat.proc3829895.chain_2146,blat.proc3829895.chain_2148,blat.proc3829895.chain_2149	5
scaffold_103	alt_donor	6807	6808	+	asmbl_5189	none	STRG.30115.1,blat.proc3829885.chain_3182	2	STRG.30115.2	1
scaffold_7	starts_in_intron	1233415	1233415	+	asmbl_50476,asmbl_50485	none	STRG.8627.8,STRG.8627.9	2	STRG.8627.2,STRG.8627.3,STRG.8627.5,STRG.8627.6,STRG.8627.7,Trinity_GG_4740_c0_g1_i15,Trinity_GG_4740_c0_g1_i16,Trinity_GG_4740_c0_g1_i17,Trinity_GG_4740_c0_g1_i21,blat.proc3829875.chain_1042,blat.proc3829875.chain_1046,blat.proc3829875.chain_1047,blat.proc3829875.chain_1052	13
scaffold_1	retained_intron	14305743	14305929	+	asmbl_2355	none	blat.proc3829871.chain_1135	1	STRG.1018.1,blat.proc3829871.chain_1134	2
scaffold_21	alternate_exon	693823	694384	+	asmbl_28306	none	STRG.23742.1	1	STRG.23742.3,STRG.23742.4,Trinity_GG_13161_c0_g1_i1	3
scaffold_20	starts_in_intron	862853	862853	+	asmbl_25545	none	Trinity_GG_12573_c0_g1_i2	1	STRG.22783.2	1
scaffold_26	alt_donor	1323176	1323177	-	asmbl_34679	none	STRG.27898.3	1	STRG.27898.1,STRG.27898.2,STRG.27898.4,blat.proc3829901.chain_1143,blat.proc3829901.chain_1144	5
scaffold_14	ends_in_intron	11331318	11331318	-	asmbl_13456	none	Trinity_GG_26747_c1_g1_i1	1	STRG.17450.1,blat.proc3829895.chain_2084	2
scaffold_10	alt_donor	11833311	11833312	+	asmbl_4772	none	STRG.12812.1,blat.proc3829877.chain_1393	2	STRG.12812.2	1
scaffold_1	alt_acceptor	11096479	11096480	+	asmbl_2047	none	Trinity_GG_451_c0_g1_i4	1	STRG.726.2	1
scaffold_27	retained_intron	2903102	2903179	-	asmbl_36823	none	STRG.28755.3,blat.proc3829901.chain_1933	2	STRG.28755.2	1
scaffold_5	retained_intron	10251374	10251506	-	asmbl_45714,asmbl_45715	none	STRG.6319.2,blat.proc3829889.chain_2330,blat.proc3829889.chain_2331	3	STRG.6319.1,blat.proc3829889.chain_2332,blat.proc3829889.chain_2333	3
scaffold_11	spliced_intron	14528202	14528402	+	asmbl_6064	none	STRG.14237.1,blat.proc3829877.chain_2727	2	STRG.14237.2	1
scaffold_14	spliced_intron	11944578	11944701	+	asmbl_12388	none	STRG.17520.1,Trinity_GG_9639_c0_g1_i2,blat.proc3829879.chain_2226	3	Trinity_GG_9639_c0_g1_i3,blat.proc3829879.chain_2225	2
scaffold_19	spliced_intron	12971908	12971989	-	asmbl_21790,asmbl_21791,asmbl_21792	none	STRG.22606.1,Trinity_GG_29578_c0_g1_i1,Trinity_GG_29578_c0_g1_i2,blat.proc3829897.chain_3324,blat.proc3829897.chain_3325	5	STRG.22606.2,STRG.22606.3,STRG.22606.4,STRG.22606.5,Trinity_GG_29578_c0_g1_i4,Trinity_GG_29578_c0_g1_i5,Trinity_GG_29578_c0_g1_i6,Trinity_GG_29578_c0_g1_i7,Trinity_GG_29578_c0_g1_i8,blat.proc3829897.chain_3318,blat.proc3829897.chain_3320,blat.proc3829897.chain_3321,blat.proc3829897.chain_3322,blat.proc3829897.chain_3323	14
scaffold_1	alt_acceptor	14259748	14259749	-	asmbl_884	none	STRG.1016.1,blat.proc3829887.chain_912	2	blat.proc3829887.chain_913	1
scaffold_24	spliced_intron	5949822	5950116	+	asmbl_32282	none	blat.proc3829883.chain_3548	1	blat.proc3829883.chain_3539,blat.proc3829883.chain_3542,blat.proc3829883.chain_3544,blat.proc3829883.chain_3546,blat.proc3829883.chain_3547,blat.proc3829883.chain_3549	6
scaffold_8	starts_in_intron	6809345	6809345	-	asmbl_52882	none	blat.proc3829891.chain_2194	1	STRG.10035.1,STRG.10035.3,blat.proc3829891.chain_2192	3
scaffold_25	starts_in_intron	8507253	8507253	-	asmbl_34423	none	blat.proc3829901.chain_928	1	STRG.27671.1	1
scaffold_13	alt_acceptor	5820648	5820649	+	asmbl_10882	none	STRG.15880.4	1	STRG.15880.1,STRG.15880.3	2
scaffold_14	spliced_intron	6281800	6282048	+	asmbl_12037	none	STRG.17063.3,blat.proc3829879.chain_1741	2	STRG.17063.1,STRG.17063.2,STRG.17063.4,STRG.17063.5,blat.proc3829879.chain_1740,blat.proc3829879.chain_1742,blat.proc3829879.chain_1744,blat.proc3829879.chain_1746	8
scaffold_18	spliced_intron	8865903	8866098	-	asmbl_20062,asmbl_20065,asmbl_20068	none	STRG.21541.3,blat.proc3829897.chain_2356,blat.proc3829897.chain_2357,blat.proc3829897.chain_2359	4	STRG.21541.1,Trinity_GG_29045_c1_g1_i1,blat.proc3829897.chain_2364	3
scaffold_11	alt_acceptor	8790198	8790199	-	asmbl_6861	none	STRG.13891.3	1	STRG.13891.2,STRG.13891.4	2
scaffold_18	alt_donor	10293201	10293202	-	asmbl_20136	none	STRG.21618.3	1	STRG.21618.1,STRG.21618.2,blat.proc3829897.chain_2457	3
scaffold_5	spliced_intron	2234179	2234653	-	asmbl_45268,asmbl_45269	none	STRG.5750.2,blat.proc3829889.chain_1846	2	STRG.5750.1,Trinity_GG_20251_c0_g1_i5,blat.proc3829889.chain_1844,blat.proc3829889.chain_1845	4
scaffold_13	starts_in_intron	1235043	1235043	+	asmbl_10515,asmbl_10517,asmbl_10520	none	STRG.15478.5,STRG.15478.6,STRG.15478.7,Trinity_GG_8526_c0_g2_i3,blat.proc3829879.chain_204	5	STRG.15478.1,STRG.15478.2,STRG.15478.4,blat.proc3829879.chain_207	4
scaffold_7	ends_in_intron	717504	717504	-	asmbl_49506	none	Trinity_GG_21938_c0_g1_i3,blat.proc3829891.chain_981	2	STRG.8600.1,blat.proc3829891.chain_979	2
scaffold_137	spliced_intron	8309	8646	-	asmbl_11706	none	STRG.30156.2	1	STRG.30156.1,Trinity_GG_33929_c0_g1_i1,blat.proc3829901.chain_3246	3
scaffold_9	spliced_intron	9405231	9405353	-	asmbl_55130	none	STRG.11286.1,blat.proc3829891.chain_3432	2	Trinity_GG_23264_c0_g1_i2,Trinity_GG_23264_c0_g1_i3,blat.proc3829891.chain_3430,blat.proc3829891.chain_3431	4
scaffold_16	alt_acceptor	10746576	10746577	+	asmbl_17355,asmbl_17357	none	STRG.19614.2,STRG.19614.3,Trinity_GG_10748_c0_g1_i1,blat.proc3829881.chain_489	4	STRG.19614.1,Trinity_GG_10748_c0_g1_i2,blat.proc3829881.chain_490	3
scaffold_20	alt_acceptor	11948625	11948626	-	asmbl_27133	none	STRG.23687.2	1	blat.proc3829899.chain_605,blat.proc3829899.chain_606	2
scaffold_14	alternate_exon	12765812	12765951	-	asmbl_13583,asmbl_13586	none	STRG.17572.1,blat.proc3829895.chain_2355,blat.proc3829895.chain_2360,blat.proc3829895.chain_2361	4	STRG.17572.5,blat.proc3829895.chain_2357,blat.proc3829895.chain_2363	3
scaffold_8	alternate_exon	11048797	11048921	+	asmbl_52177,asmbl_52178	none	STRG.10308.1,blat.proc3829875.chain_2826,blat.proc3829875.chain_2828	3	STRG.10308.2,blat.proc3829875.chain_2827	2
scaffold_25	retained_intron	6253400	6253539	+	asmbl_33603,asmbl_33605	none	Trinity_GG_15150_c0_g1_i3,blat.proc3829885.chain_519,blat.proc3829885.chain_521	3	STRG.27492.1,blat.proc3829885.chain_517,blat.proc3829885.chain_518,blat.proc3829885.chain_520	4
scaffold_6	alt_donor	12899732	12899733	+	asmbl_47380	none	STRG.8040.3	1	STRG.8040.1,STRG.8040.2,blat.proc3829875.chain_412	3
scaffold_2	skipped_exon	3898325	3899364	+	asmbl_24341	none	blat.proc3829871.chain_1841	1	STRG.1831.2,blat.proc3829871.chain_1842	2
scaffold_14	starts_in_intron	9966023	9966023	-	asmbl_13378	none	STRG.17349.2,blat.proc3829895.chain_2071	2	STRG.17349.1	1
scaffold_4	starts_in_intron	6350189	6350189	+	asmbl_42736	none	Trinity_GG_2488_c0_g1_i2,blat.proc3829873.chain_845	2	STRG.4504.1,Trinity_GG_2488_c0_g1_i3,blat.proc3829873.chain_846	3
scaffold_16	ends_in_intron	15224040	15224040	+	asmbl_17522	none	STRG.19866.2,blat.proc3829881.chain_657	2	STRG.19866.1,STRG.19866.3,STRG.19866.4	3
scaffold_17	spliced_intron	3998821	3998969	+	asmbl_17880,asmbl_17882,asmbl_17884,asmbl_17886,asmbl_17887	none	STRG.20145.2,STRG.20145.3,STRG.20145.4,blat.proc3829881.chain_989,blat.proc3829881.chain_990,blat.proc3829881.chain_991	6	STRG.20145.1,blat.proc3829881.chain_988,blat.proc3829881.chain_992	3
scaffold_10	alt_acceptor	12143094	12143095	-	asmbl_3713	none	STRG.12837.2	1	STRG.12837.1	1
scaffold_11	retained_exon	7403752	7404186	+	asmbl_5634	none	STRG.13741.1,Trinity_GG_7558_c0_g1_i1,blat.proc3829877.chain_2207	3	Trinity_GG_7558_c0_g1_i2,blat.proc3829877.chain_2208	2
scaffold_20	alt_donor	8167648	8167649	+	asmbl_25903	none	STRG.23350.1,Trinity_GG_12869_c0_g1_i2,blat.proc3829883.chain_427	3	STRG.23350.2	1
scaffold_9	retained_intron	3669216	3669242	+	asmbl_53893	none	Trinity_GG_6105_c0_g1_i1,blat.proc3829875.chain_3447	2	STRG.10965.3	1
scaffold_12	alt_acceptor	11951802	11951803	-	asmbl_7969	none	STRG.15095.2	1	STRG.15095.1	1
scaffold_10	spliced_intron	5200830	5200903	-	asmbl_3263	none	STRG.12339.2,blat.proc3829893.chain_799	2	STRG.12339.1,blat.proc3829893.chain_801,blat.proc3829893.chain_802	3
scaffold_7	retained_intron	16823575	16823876	-	asmbl_50231,asmbl_50235	none	STRG.9585.1,blat.proc3829891.chain_1828,blat.proc3829891.chain_1829	3	STRG.9585.2,blat.proc3829891.chain_1826	2
scaffold_15	retained_intron	9873560	9873882	+	asmbl_14375	none	blat.proc3829879.chain_3065	1	STRG.18515.1,blat.proc3829879.chain_3062,blat.proc3829879.chain_3063	3
scaffold_22	starts_in_intron	7123087	7123087	+	asmbl_29446	none	STRG.25032.3,Trinity_GG_13867_c0_g1_i5,blat.proc3829883.chain_2117	3	STRG.25032.1,STRG.25032.2,Trinity_GG_13867_c0_g1_i2,Trinity_GG_13867_c0_g1_i3,blat.proc3829883.chain_2115,blat.proc3829883.chain_2116,blat.proc3829883.chain_2118,blat.proc3829883.chain_2119	8
scaffold_2	starts_in_intron	17984175	17984175	+	asmbl_25251	none	STRG.2691.1	1	blat.proc3829871.chain_2890,blat.proc3829871.chain_2891	2
scaffold_8	ends_in_intron	15686051	15686051	-	asmbl_53343	none	Trinity_GG_22882_c0_g1_i3,blat.proc3829891.chain_2711	2	STRG.10564.1,STRG.10564.2,Trinity_GG_22882_c0_g1_i1,Trinity_GG_22882_c0_g1_i2,blat.proc3829891.chain_2709,blat.proc3829891.chain_2710	6
scaffold_3	skipped_exon	10275118	10275967	+	asmbl_40206,asmbl_40209,asmbl_40210,asmbl_40212	none	STRG.3461.1,STRG.3461.3,STRG.3461.4,blat.proc3829871.chain_3621,blat.proc3829871.chain_3622,blat.proc3829871.chain_3624	6	STRG.3461.2,blat.proc3829871.chain_3625	2
scaffold_28	alt_donor	2117264	2117265	+	asmbl_38020	none	STRG.29348.2	1	STRG.29348.1,blat.proc3829885.chain_2475	2
scaffold_8	alternate_exon	12319659	12321228	-	asmbl_53187,asmbl_53192,asmbl_53193,asmbl_53194	none	STRG.10399.1,STRG.10399.2,blat.proc3829891.chain_2529,blat.proc3829891.chain_2530,blat.proc3829891.chain_2531	5	STRG.10399.3,STRG.10399.4,blat.proc3829891.chain_2527,blat.proc3829891.chain_2532	4
scaffold_7	spliced_intron	4915758	4915841	+	asmbl_50645	none	STRG.8828.4	1	STRG.8828.1,blat.proc3829875.chain_1206	2
scaffold_8	starts_in_intron	1253769	1253769	+	asmbl_51677	none	blat.proc3829875.chain_2198	1	STRG.9741.1	1
scaffold_8	alternate_exon	5432422	5432487	+	asmbl_51870,asmbl_51872,asmbl_51873	none	STRG.9965.2,blat.proc3829875.chain_2414,blat.proc3829875.chain_2415,blat.proc3829875.chain_2416	4	STRG.9965.1	1
scaffold_8	alt_donor	18420486	18420487	-	asmbl_53552	none	STRG.10732.2,Trinity_GG_22989_c0_g1_i3,blat.proc3829891.chain_2932	3	STRG.10732.1,Trinity_GG_22989_c0_g1_i1,blat.proc3829891.chain_2930	3
scaffold_5	alternate_exon	10142923	10142944	-	asmbl_45693	none	Trinity_GG_20561_c0_g1_i2,blat.proc3829889.chain_2384	2	STRG.6301.1	1
scaffold_11	spliced_intron	10398883	10399063	+	asmbl_5907,asmbl_5909	none	STRG.14037.2,blat.proc3829877.chain_2427	2	blat.proc3829877.chain_2428	1
scaffold_14	spliced_intron	1069987	1070949	+	asmbl_11766	none	STRG.16754.5	1	Trinity_GG_9205_c0_g1_i3,blat.proc3829879.chain_1437	2
scaffold_14	starts_in_intron	2300845	2300845	+	asmbl_11827	none	STRG.16832.4,Trinity_GG_9224_c2_g1_i1,blat.proc3829879.chain_1489	3	STRG.16832.2	1
scaffold_27	skipped_exon	973032	975196	+	asmbl_35937	none	Trinity_GG_15816_c0_g1_i2,blat.proc3829885.chain_1619	2	STRG.28576.1,STRG.28576.2,Trinity_GG_15816_c0_g1_i5,Trinity_GG_15816_c0_g1_i6,blat.proc3829885.chain_1616,blat.proc3829885.chain_1617	6
scaffold_15	alt_donor	4231185	4231186	+	asmbl_14071,asmbl_14072	none	STRG.18160.2,blat.proc3829879.chain_2806,blat.proc3829879.chain_2808	3	blat.proc3829879.chain_2811	1
scaffold_24	alt_acceptor	7737492	7737493	-	asmbl_33047	none	Trinity_GG_32004_c0_g1_i2,blat.proc3829901.chain_108	2	STRG.26804.1,Trinity_GG_32004_c0_g1_i1,blat.proc3829901.chain_107	3
scaffold_15	alternate_exon	11141906	11148626	-	asmbl_15499	none	blat.proc3829895.chain_3283	1	blat.proc3829895.chain_3284,blat.proc3829895.chain_3285	2
scaffold_14	starts_in_intron	3162621	3162621	+	asmbl_11884,asmbl_11888	none	STRG.16893.4,blat.proc3829879.chain_1641,blat.proc3829879.chain_1642	3	STRG.16893.1,STRG.16893.2	2
scaffold_4	alt_acceptor	13417536	13417537	+	asmbl_43121,asmbl_43123	none	STRG.4972.1,blat.proc3829873.chain_1257,blat.proc3829873.chain_1260	3	STRG.4972.2,blat.proc3829873.chain_1258,blat.proc3829873.chain_1259	3
scaffold_1	spliced_intron	2131805	2132592	+	asmbl_1532	none	blat.proc3829871.chain_171	1	STRG.143.1,blat.proc3829871.chain_172	2
scaffold_16	retained_exon	10972865	10972915	-	asmbl_16501	none	blat.proc3829897.chain_541	1	STRG.19633.1,STRG.19633.2,blat.proc3829897.chain_538,blat.proc3829897.chain_540	4
scaffold_2	starts_in_intron	6084270	6084270	-	asmbl_23199	none	blat.proc3829887.chain_1838	1	STRG.1980.1,blat.proc3829887.chain_1841	2
scaffold_2	alternate_exon	17605108	17606331	+	asmbl_25218	none	STRG.2645.1,blat.proc3829871.chain_2808	2	Trinity_GG_1477_c0_g1_i2,blat.proc3829871.chain_2807	2
scaffold_9	retained_exon	6846822	6847005	-	asmbl_55038	none	STRG.11185.1,blat.proc3829891.chain_3260	2	STRG.11185.3	1
scaffold_14	spliced_intron	12014256	12014280	+	asmbl_12395	none	blat.proc3829895.chain_2242	1	STRG.17523.2	1
scaffold_4	alt_donor	14590903	14590904	-	asmbl_41800	none	STRG.5078.3	1	STRG.5078.1,STRG.5078.2,blat.proc3829889.chain_1111,blat.proc3829889.chain_1112	4
scaffold_8	alt_donor	9875726	9875727	+	asmbl_52112,asmbl_52113	none	STRG.10224.1,STRG.10224.3,blat.proc3829875.chain_2735,blat.proc3829875.chain_2736	4	STRG.10224.2,blat.proc3829875.chain_2737	2
scaffold_27	retained_intron	3742551	3742650	-	asmbl_36874,asmbl_36875	none	STRG.28820.1,blat.proc3829901.chain_1966,blat.proc3829901.chain_1967	3	STRG.28820.2,STRG.28820.3,blat.proc3829901.chain_1965,blat.proc3829901.chain_1968	4
scaffold_12	ends_in_intron	98020	98020	-	asmbl_7408	none	STRG.14407.2,blat.proc3829893.chain_2811	2	STRG.14407.1,blat.proc3829893.chain_2810	2
scaffold_3	alternate_exon	1654852	1655297	-	asmbl_38680	none	STRG.2989.2,blat.proc3829887.chain_2778	2	blat.proc3829887.chain_2779	1
scaffold_25	retained_intron	6067817	6067976	-	asmbl_34291,asmbl_34292,asmbl_34293	none	blat.proc3829901.chain_716,blat.proc3829901.chain_718,blat.proc3829901.chain_719	3	blat.proc3829901.chain_721	1
scaffold_24	spliced_intron	1078652	1078823	+	asmbl_32077	none	STRG.26363.3,blat.proc3829883.chain_3301	2	STRG.26363.2,blat.proc3829883.chain_3302	2
scaffold_1	skipped_exon	11911574	11912158	+	asmbl_2149	none	Trinity_GG_503_c0_g1_i1,blat.proc3829871.chain_900	2	Trinity_GG_503_c0_g1_i2,blat.proc3829871.chain_899	2
scaffold_19	retained_exon	3683036	3683128	+	asmbl_22132,asmbl_22133,asmbl_22135	none	STRG.22046.1,STRG.22046.3,STRG.22046.4	3	STRG.22046.2,STRG.22046.6	2
scaffold_27	alt_donor	4494581	4494582	-	asmbl_36913	none	STRG.28881.1,blat.proc3829901.chain_2056	2	STRG.28881.2	1
scaffold_10	starts_in_intron	3416691	3416691	+	asmbl_4317	none	STRG.12163.2	1	STRG.12163.1	1
scaffold_27	skipped_exon	2830216	2832414	+	asmbl_36086	none	STRG.28748.1,blat.proc3829885.chain_1828	2	STRG.28748.3,blat.proc3829885.chain_1826	2
scaffold_26	retained_intron	5562155	5562324	+	asmbl_35547	none	STRG.28248.3	1	STRG.28248.4	1
scaffold_5	alt_donor	13222303	13222304	-	asmbl_45911	none	STRG.6552.1,blat.proc3829889.chain_2628	2	STRG.6552.2	1
scaffold_5	spliced_intron	16206282	16206377	+	asmbl_44720	none	STRG.6800.2	1	blat.proc3829873.chain_2888	1
scaffold_17	starts_in_intron	5271765	5271765	-	asmbl_18970	none	blat.proc3829897.chain_1195	1	STRG.20238.1,blat.proc3829897.chain_1196	2
scaffold_1	retained_intron	7370071	7370112	-	asmbl_439,asmbl_442	none	STRG.517.1,STRG.517.4,Trinity_GG_17298_c0_g1_i1,blat.proc3829887.chain_413	4	STRG.517.3	1
scaffold_6	starts_in_intron	16475006	16475006	+	asmbl_47640	none	Trinity_GG_4588_c0_g1_i1,blat.proc3829875.chain_742	2	STRG.8366.1,Trinity_GG_4588_c0_g1_i2,blat.proc3829875.chain_741	3
scaffold_13	starts_in_intron	2359452	2359452	+	asmbl_10566	none	Trinity_GG_8511_c0_g1_i12,blat.proc3829879.chain_153	2	STRG.15543.12,STRG.15543.3,STRG.15543.6,STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161,blat.proc3829879.chain_162	13
scaffold_25	alt_donor	2956328	2956329	-	asmbl_34064	none	blat.proc3829901.chain_498	1	STRG.27220.1,blat.proc3829901.chain_499	2
scaffold_7	alternate_exon	2503288	2503410	-	asmbl_49571	none	STRG.8677.3	1	STRG.8677.1	1
scaffold_10	alt_acceptor	14826322	14826323	+	asmbl_4942	none	STRG.13014.1	1	STRG.13014.2,STRG.13014.3,blat.proc3829877.chain_1558	3
scaffold_21	retained_intron	1171743	1171837	-	asmbl_27410	none	blat.proc3829899.chain_849	1	STRG.23783.1,STRG.23783.2,blat.proc3829899.chain_848	3
scaffold_3	alt_acceptor	6247911	6247912	-	asmbl_38882,asmbl_38883,asmbl_38892	none	STRG.3263.1,STRG.3263.7,blat.proc3829887.chain_3032,blat.proc3829887.chain_3033,blat.proc3829887.chain_3035	5	STRG.3263.2,blat.proc3829887.chain_3031	2
scaffold_3	skipped_exon	5928825	5929630	-	asmbl_38828	none	blat.proc3829887.chain_2991	1	STRG.3248.1,blat.proc3829887.chain_2990,blat.proc3829887.chain_2992,blat.proc3829887.chain_2993	4
scaffold_15	starts_in_intron	12669958	12669958	-	asmbl_15618	none	blat.proc3829895.chain_3487	1	STRG.18714.1	1
scaffold_2	alternate_exon	8070000	8070045	-	asmbl_23335	none	STRG.2105.2	1	STRG.2105.1,blat.proc3829887.chain_1996	2
scaffold_17	retained_exon	14325767	14325815	-	asmbl_19471	none	STRG.20895.1,blat.proc3829897.chain_1796	2	STRG.20895.2,Trinity_GG_28739_c0_g1_i1,blat.proc3829897.chain_1797	3
scaffold_701	alternate_exon	4078	4121	-	asmbl_51554	none	STRG.30415.3	1	STRG.30415.1,STRG.30415.2,blat.proc3829901.chain_3452,blat.proc3829901.chain_3453	4
scaffold_18	starts_in_intron	5915028	5915028	-	asmbl_19921	none	Trinity_GG_28939_c0_g1_i2,blat.proc3829897.chain_2161	2	STRG.21333.1,Trinity_GG_28939_c0_g1_i1,blat.proc3829897.chain_2162	3
scaffold_12	skipped_exon	13030042	13031704	-	asmbl_8033	none	STRG.15173.3,blat.proc3829893.chain_3571	2	STRG.15173.1,STRG.15173.2,blat.proc3829893.chain_3570	3
scaffold_5	alt_donor	1097266	1097267	-	asmbl_45215	none	STRG.5657.4	1	STRG.5657.1	1
scaffold_25	alt_acceptor	3185586	3185587	-	asmbl_34099,asmbl_34100	none	STRG.27241.1,STRG.27241.3,blat.proc3829901.chain_565,blat.proc3829901.chain_566	4	STRG.27241.2,blat.proc3829901.chain_567	2
scaffold_5	alt_acceptor	13227833	13227834	+	asmbl_44533	none	STRG.6554.2,blat.proc3829873.chain_2679	2	STRG.6554.1	1
scaffold_14	ends_in_intron	15912005	15912005	-	asmbl_13745	none	Trinity_GG_27009_c0_g1_i1,blat.proc3829895.chain_2504	2	STRG.17820.2,STRG.17820.4,Trinity_GG_27009_c0_g1_i2,blat.proc3829895.chain_2505,blat.proc3829895.chain_2506	5
scaffold_2	alternate_exon	14133107	14133149	-	asmbl_23577	none	STRG.2406.3	1	STRG.2406.1,blat.proc3829887.chain_2196,blat.proc3829887.chain_2197,blat.proc3829887.chain_2198	4
scaffold_22	starts_in_intron	4208489	4208489	-	asmbl_29971	none	Trinity_GG_30878_c0_g1_i3,blat.proc3829899.chain_1932	2	blat.proc3829899.chain_1931,blat.proc3829899.chain_1933	2
scaffold_3	retained_intron	7286007	7286114	-	asmbl_38913,asmbl_38914	none	STRG.3325.2,STRG.3325.3,blat.proc3829887.chain_3070,blat.proc3829887.chain_3071	4	STRG.3325.1,blat.proc3829887.chain_3069	2
scaffold_18	starts_in_intron	3876802	3876802	+	asmbl_20515	none	Trinity_GG_11621_c1_g1_i4,blat.proc3829881.chain_1996	2	STRG.21189.1,blat.proc3829881.chain_1997	2
scaffold_6	spliced_intron	3056262	3057109	+	asmbl_46748	none	blat.proc3829873.chain_3441	1	blat.proc3829873.chain_3443	1
scaffold_11	alt_donor	11637423	11637424	+	asmbl_5952	none	blat.proc3829877.chain_2573	1	blat.proc3829877.chain_2571,blat.proc3829877.chain_2574	2
scaffold_12	spliced_intron	4720907	4720996	-	asmbl_7566,asmbl_7567,asmbl_7568,asmbl_7569	none	STRG.14636.1,STRG.14636.2,blat.proc3829893.chain_3003,blat.proc3829893.chain_3004	4	Trinity_GG_25166_c0_g1_i3,blat.proc3829893.chain_3006	2
scaffold_1	alt_donor	18032455	18032456	-	asmbl_1076,asmbl_1077,asmbl_1080	none	STRG.1267.1,STRG.1267.2,Trinity_GG_17699_c0_g1_i1,Trinity_GG_17699_c0_g1_i5,blat.proc3829887.chain_1166,blat.proc3829887.chain_1168	6	STRG.1267.3,Trinity_GG_17699_c0_g1_i2,blat.proc3829887.chain_1167	3
scaffold_21	alternate_exon	4106059	4106175	+	asmbl_28528	none	STRG.23973.1	1	STRG.23973.2,STRG.23973.3,blat.proc3829883.chain_1131	3
scaffold_12	alt_acceptor	9538293	9538294	-	asmbl_7806	none	STRG.14917.2	1	STRG.14917.1,blat.proc3829893.chain_3257	2
scaffold_13	alt_acceptor	15511057	15511058	+	asmbl_11492	none	STRG.16580.2	1	STRG.16580.3	1
scaffold_23	alternate_exon	10976189	10976539	+	asmbl_31197	none	blat.proc3829883.chain_3198	1	STRG.26281.2	1
scaffold_14	spliced_intron	208851	208933	-	asmbl_12776,asmbl_12777,asmbl_12778,asmbl_12779	none	STRG.16702.1,STRG.16702.3,STRG.16702.4,STRG.16702.5,Trinity_GG_26362_c0_g1_i3,Trinity_GG_26362_c0_g1_i4,Trinity_GG_26362_c0_g1_i5,blat.proc3829895.chain_1403,blat.proc3829895.chain_1404,blat.proc3829895.chain_1405	10	Trinity_GG_26362_c0_g1_i2,blat.proc3829895.chain_1402	2
scaffold_21	alternate_exon	1758526	1759301	-	asmbl_27444	none	STRG.23809.2,Trinity_GG_30286_c3_g1_i1,blat.proc3829899.chain_891	3	blat.proc3829899.chain_886	1
scaffold_7	alt_acceptor	7611435	7611436	-	asmbl_49765	none	STRG.9004.3	1	STRG.9004.1,STRG.9004.2,STRG.9004.4,blat.proc3829891.chain_1278,blat.proc3829891.chain_1280	5
scaffold_10	spliced_intron	5200984	5201075	-	asmbl_3262,asmbl_3263	none	STRG.12339.1,STRG.12339.2,blat.proc3829893.chain_799,blat.proc3829893.chain_801	4	blat.proc3829893.chain_802	1
scaffold_25	spliced_intron	5377112	5377334	-	asmbl_34233	none	STRG.27432.2,blat.proc3829901.chain_760	2	STRG.27432.1,Trinity_GG_32393_c0_g1_i1,blat.proc3829901.chain_759	3
scaffold_2	ends_in_intron	6913131	6913131	+	asmbl_24549	none	Trinity_GG_1104_c1_g1_i1,blat.proc3829871.chain_2030	2	STRG.2037.1,blat.proc3829871.chain_2029	2
scaffold_4	alt_acceptor	9964730	9964731	-	asmbl_41570,asmbl_41572	none	STRG.4758.1,blat.proc3829889.chain_822,blat.proc3829889.chain_824	3	STRG.4758.2	1
scaffold_11	retained_intron	8073049	8073152	-	asmbl_6802,asmbl_6811,asmbl_6812	none	Trinity_GG_24711_c0_g1_i17,Trinity_GG_24711_c0_g1_i8,Trinity_GG_24711_c0_g1_i9,blat.proc3829893.chain_2199,blat.proc3829893.chain_2204,blat.proc3829893.chain_2205	6	STRG.13802.1,STRG.13802.2,Trinity_GG_24711_c0_g1_i18,Trinity_GG_24711_c0_g1_i3,blat.proc3829893.chain_2197,blat.proc3829893.chain_2206,blat.proc3829893.chain_2209,blat.proc3829893.chain_2211	8
scaffold_7	spliced_intron	13173894	13174034	-	asmbl_50108,asmbl_50109	none	STRG.9415.1,STRG.9415.2,blat.proc3829891.chain_1650	3	Trinity_GG_22303_c0_g1_i1,blat.proc3829891.chain_1651	2
scaffold_23	ends_in_intron	1195671	1195671	+	asmbl_30623	none	blat.proc3829883.chain_2512	1	STRG.25586.1,blat.proc3829883.chain_2511	2
scaffold_13	alt_acceptor	909741	909742	-	asmbl_9345,asmbl_9346	none	STRG.15448.4,STRG.15448.6	2	STRG.15448.1,STRG.15448.3,STRG.15448.5,blat.proc3829895.chain_212,blat.proc3829895.chain_213,blat.proc3829895.chain_214,blat.proc3829895.chain_215	7
scaffold_10	starts_in_intron	11911645	11911645	-	asmbl_3702,asmbl_3705	none	blat.proc3829893.chain_1283,blat.proc3829893.chain_1286	2	STRG.12817.1,STRG.12817.2,blat.proc3829893.chain_1285	3
scaffold_11	alt_donor	7049528	7049529	+	asmbl_5612,asmbl_5614,asmbl_5615	none	STRG.13722.2,STRG.13722.3,Trinity_GG_7553_c0_g1_i3,Trinity_GG_7553_c0_g1_i8,blat.proc3829877.chain_2193,blat.proc3829877.chain_2196	6	STRG.13722.1,Trinity_GG_7553_c0_g1_i7,blat.proc3829877.chain_2194	3
scaffold_5	alternate_exon	10539720	10539915	-	asmbl_45746,asmbl_45747,asmbl_45748,asmbl_45751	none	STRG.6329.1,STRG.6329.3,STRG.6329.4,Trinity_GG_20579_c0_g1_i4,blat.proc3829889.chain_2425,blat.proc3829889.chain_2427,blat.proc3829889.chain_2428	7	Trinity_GG_20579_c0_g1_i7	1
scaffold_23	alt_donor	7006308	7006309	-	asmbl_31727	none	STRG.26005.3,blat.proc3829899.chain_3077	2	STRG.26005.2	1
scaffold_15	alt_acceptor	13760201	13760202	-	asmbl_15681,asmbl_15683,asmbl_15684	none	STRG.18798.1,blat.proc3829895.chain_3562,blat.proc3829895.chain_3565,blat.proc3829895.chain_3566	4	blat.proc3829895.chain_3564	1
scaffold_10	alt_acceptor	5495941	5495942	-	asmbl_3282	none	blat.proc3829893.chain_815	1	STRG.12375.1,blat.proc3829893.chain_814,blat.proc3829893.chain_816	3
scaffold_15	skipped_exon	8073277	8075917	-	asmbl_15353	none	STRG.18373.1,blat.proc3829895.chain_3061	2	STRG.18373.2,blat.proc3829895.chain_3062	2
scaffold_18	alternate_exon	8871741	8882158	-	asmbl_20071,asmbl_20073	none	STRG.21540.1,blat.proc3829897.chain_2287,blat.proc3829897.chain_2288	3	STRG.21540.3,STRG.21540.4,Trinity_GG_29008_c0_g1_i3,Trinity_GG_29008_c0_g1_i4,blat.proc3829897.chain_2285,blat.proc3829897.chain_2286	6
scaffold_19	retained_intron	12482434	12483861	-	asmbl_21709	none	Trinity_GG_29573_c0_g1_i1,Trinity_GG_29573_c0_g1_i5,blat.proc3829897.chain_3297,blat.proc3829897.chain_3298	4	STRG.22566.1,blat.proc3829897.chain_3296	2
scaffold_23	alt_acceptor	7046371	7046372	-	asmbl_31731,asmbl_31733	none	STRG.26010.1,blat.proc3829899.chain_3117,blat.proc3829899.chain_3120	3	blat.proc3829899.chain_3118	1
scaffold_6	retained_intron	7936991	7937104	-	asmbl_48447,asmbl_48450	none	blat.proc3829889.chain_3703,blat.proc3829889.chain_3706	2	STRG.7666.3	1
scaffold_10	ends_in_intron	6597932	6597932	-	asmbl_3395	none	blat.proc3829893.chain_937	1	STRG.12472.1,STRG.12472.2,blat.proc3829893.chain_938	3
scaffold_14	ends_in_intron	8009314	8009314	+	asmbl_12171	none	blat.proc3829879.chain_1949	1	STRG.17203.1,blat.proc3829879.chain_1952	2
scaffold_6	starts_in_intron	13982270	13982270	-	asmbl_48910	none	blat.proc3829891.chain_456	1	STRG.8147.1,blat.proc3829891.chain_452,blat.proc3829891.chain_453	3
scaffold_7	retained_intron	12455195	12455507	-	asmbl_50037,asmbl_50038,asmbl_50039,asmbl_50040,asmbl_50041,asmbl_50045	none	Trinity_GG_22282_c0_g1_i1,blat.proc3829891.chain_1601	2	STRG.9342.1,STRG.9342.2,STRG.9342.4,STRG.9342.5,blat.proc3829891.chain_1602	5
scaffold_4	alternate_exon	8983491	8984444	+	asmbl_42933	none	STRG.4710.1,blat.proc3829873.chain_1072	2	STRG.4710.2	1
scaffold_24	alternate_exon	4375882	4376716	+	asmbl_32211	none	blat.proc3829883.chain_3478	1	STRG.26580.2	1
scaffold_9	alternate_exon	9703495	9703598	+	asmbl_54220	none	STRG.11336.4	1	STRG.11336.1,STRG.11336.2,STRG.11336.3,STRG.11336.5,blat.proc3829877.chain_109,blat.proc3829877.chain_110,blat.proc3829877.chain_112	7
scaffold_13	alt_donor	521706	521707	+	asmbl_10454,asmbl_10456,asmbl_10457,asmbl_10458,asmbl_10459,asmbl_10460,asmbl_10461	none	STRG.15434.1,STRG.15434.2,STRG.15434.3,STRG.15434.4,STRG.15434.5,Trinity_GG_8491_c0_g1_i1,blat.proc3829879.chain_110,blat.proc3829879.chain_111,blat.proc3829879.chain_114,blat.proc3829879.chain_115,blat.proc3829879.chain_116	11	Trinity_GG_8491_c0_g1_i4,blat.proc3829879.chain_112	2
scaffold_9	spliced_intron	16656777	16657454	-	asmbl_55565,asmbl_55568	none	STRG.11803.1,STRG.11803.3,blat.proc3829893.chain_209	3	STRG.11803.2,STRG.11803.4,blat.proc3829893.chain_211,blat.proc3829893.chain_212,blat.proc3829893.chain_213	5
scaffold_12	starts_in_intron	6542189	6542189	+	asmbl_8662	none	Trinity_GG_8141_c0_g1_i1,blat.proc3829877.chain_3228	2	STRG.14744.1,Trinity_GG_8141_c0_g1_i2,blat.proc3829877.chain_3229	3
scaffold_8	alternate_exon	5430917	5431006	+	asmbl_51871	none	STRG.9965.1	1	STRG.9965.2,blat.proc3829875.chain_2414,blat.proc3829875.chain_2415,blat.proc3829875.chain_2416	4
scaffold_19	alt_donor	7426060	7426061	+	asmbl_22257	none	STRG.22209.2,Trinity_GG_12263_c0_g1_i2,blat.proc3829881.chain_3126	3	STRG.22209.1,blat.proc3829881.chain_3127	2
scaffold_8	alt_donor	11849733	11849734	+	asmbl_52284	none	STRG.10382.2	1	STRG.10382.3,blat.proc3829875.chain_2967,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2976,blat.proc3829875.chain_2978,blat.proc3829875.chain_2979	7
scaffold_22	retained_intron	11402361	11402463	+	asmbl_29666	none	Trinity_GG_14029_c0_g1_i1,Trinity_GG_14029_c0_g1_i4,blat.proc3829883.chain_2342,blat.proc3829883.chain_2344	4	STRG.25459.1	1
scaffold_13	alt_acceptor	3154946	3154947	+	asmbl_10650	none	STRG.15609.2	1	STRG.15609.1,blat.proc3829879.chain_340	2
scaffold_11	retained_intron	13092586	13092869	+	asmbl_5997,asmbl_5998,asmbl_5999,asmbl_6002,asmbl_6003,asmbl_6004	none	Trinity_GG_7823_c0_g1_i13,blat.proc3829877.chain_2668	2	STRG.14176.2,STRG.14176.4	2
scaffold_18	starts_in_intron	8728625	8728625	+	asmbl_20890	none	Trinity_GG_11912_c0_g1_i2,blat.proc3829881.chain_2532	2	STRG.21525.1,Trinity_GG_11912_c0_g1_i1,blat.proc3829881.chain_2533	3
scaffold_7	ends_in_intron	8510800	8510800	+	asmbl_50884,asmbl_50885,asmbl_50889	none	STRG.9068.5,blat.proc3829875.chain_1526,blat.proc3829875.chain_1530	3	STRG.9068.1,STRG.9068.2,STRG.9068.4,blat.proc3829875.chain_1527	4
scaffold_8	starts_in_intron	4668390	4668390	-	asmbl_52778	none	STRG.9920.1,blat.proc3829891.chain_2079	2	blat.proc3829891.chain_2078	1
scaffold_3	skipped_exon	6821999	6822283	+	asmbl_40092	none	STRG.3304.2	1	STRG.3304.1,blat.proc3829871.chain_3442	2
scaffold_18	retained_exon	3916539	3916635	-	asmbl_19822	none	STRG.21192.2	1	STRG.21192.5	1
scaffold_10	starts_in_intron	10800856	10800856	+	asmbl_4714,asmbl_4716	none	STRG.12756.2,blat.proc3829877.chain_1330	2	STRG.12756.1,blat.proc3829877.chain_1331,blat.proc3829877.chain_1332	3
scaffold_11	alt_acceptor	11937192	11937193	-	asmbl_7021,asmbl_7022	none	STRG.14160.2,STRG.14160.5	2	STRG.14160.3,STRG.14160.4	2
scaffold_18	starts_in_intron	11211127	11211127	+	asmbl_20960	none	Trinity_GG_11975_c0_g1_i3	1	STRG.21660.1,blat.proc3829881.chain_2625	2
scaffold_27	starts_in_intron	4505833	4505833	+	asmbl_36254	none	STRG.28882.2	1	STRG.28882.1	1
scaffold_19	skipped_exon	13192750	13193059	-	asmbl_21844	none	STRG.22682.2	1	STRG.22682.1,Trinity_GG_29598_c1_g1_i12,blat.proc3829897.chain_3360,blat.proc3829897.chain_3361,blat.proc3829897.chain_3362,blat.proc3829897.chain_3363,blat.proc3829897.chain_3364,blat.proc3829897.chain_3368,blat.proc3829897.chain_3370,blat.proc3829897.chain_3371	10
scaffold_18	starts_in_intron	6238802	6238802	-	asmbl_19924	none	Trinity_GG_28980_c3_g1_i1,blat.proc3829897.chain_2235	2	STRG.21345.1,STRG.21345.2,blat.proc3829897.chain_2232	3
scaffold_10	spliced_intron	635222	635413	-	asmbl_2891	none	STRG.11933.2,blat.proc3829893.chain_377	2	STRG.11933.3,STRG.11933.4,Trinity_GG_23652_c0_g1_i1,Trinity_GG_23652_c0_g1_i2,blat.proc3829893.chain_379,blat.proc3829893.chain_381	6
scaffold_4	retained_intron	19591639	19591710	-	asmbl_42211	none	STRG.5545.1	1	blat.proc3829889.chain_1637	1
scaffold_4	spliced_intron	18296287	18296326	+	asmbl_43441	none	blat.proc3829873.chain_1652	1	STRG.5429.1,STRG.5429.2,STRG.5429.3,Trinity_GG_2984_c1_g1_i1	4
scaffold_16	retained_intron	433622	433712	-	asmbl_16046,asmbl_16050,asmbl_16051,asmbl_16052	none	blat.proc3829897.chain_19,blat.proc3829897.chain_23,blat.proc3829897.chain_24,blat.proc3829897.chain_25	4	blat.proc3829897.chain_17,blat.proc3829897.chain_18,blat.proc3829897.chain_20	3
scaffold_3	retained_intron	17361952	17362032	-	asmbl_39493,asmbl_39501	none	STRG.3972.2,Trinity_GG_19202_c0_g1_i17,blat.proc3829889.chain_26,blat.proc3829889.chain_31	4	STRG.3972.1,STRG.3972.3,STRG.3972.4,blat.proc3829889.chain_22,blat.proc3829889.chain_23,blat.proc3829889.chain_24,blat.proc3829889.chain_25,blat.proc3829889.chain_27,blat.proc3829889.chain_28,blat.proc3829889.chain_29	10
scaffold_2	alt_donor	9190283	9190284	-	asmbl_23378,asmbl_23379,asmbl_23381	none	STRG.2167.1,Trinity_GG_18242_c0_g1_i12,Trinity_GG_18242_c0_g1_i2,Trinity_GG_18242_c0_g1_i4,blat.proc3829887.chain_2101,blat.proc3829887.chain_2102,blat.proc3829887.chain_2103	7	Trinity_GG_18242_c0_g1_i7,blat.proc3829887.chain_2104	2
scaffold_14	ends_in_intron	7290905	7290905	-	asmbl_13171	none	blat.proc3829895.chain_1805	1	STRG.17151.1,blat.proc3829895.chain_1803	2
scaffold_5	ends_in_intron	17225007	17225007	+	asmbl_44811	none	blat.proc3829873.chain_3036	1	STRG.6887.1,STRG.6887.2,blat.proc3829873.chain_3030,blat.proc3829873.chain_3033	4
scaffold_8	retained_intron	4082268	4082465	+	asmbl_51798	none	blat.proc3829875.chain_2413	1	STRG.9885.1,STRG.9885.2,blat.proc3829875.chain_2411	3
scaffold_5	starts_in_intron	1249337	1249337	-	asmbl_45236	none	blat.proc3829889.chain_1779	1	STRG.5683.1,Trinity_GG_20219_c0_g1_i6,blat.proc3829889.chain_1781,blat.proc3829889.chain_1782,blat.proc3829889.chain_1783,blat.proc3829889.chain_1784	6
scaffold_17	alternate_exon	3999274	3999835	+	asmbl_17880,asmbl_17882,asmbl_17883,asmbl_17884,asmbl_17885,asmbl_17887	none	STRG.20145.1,STRG.20145.2,STRG.20145.4,blat.proc3829881.chain_989,blat.proc3829881.chain_990,blat.proc3829881.chain_991,blat.proc3829881.chain_992	7	STRG.20145.3,blat.proc3829881.chain_988	2
scaffold_13	retained_exon	366291	366416	-	asmbl_9288	none	STRG.15426.5	1	STRG.15426.3	1
scaffold_15	alt_acceptor	3695204	3695205	-	asmbl_15116	none	STRG.18132.3	1	STRG.18132.2	1
scaffold_6	alt_acceptor	13132750	13132751	-	asmbl_48820	none	STRG.8063.1,blat.proc3829891.chain_352	2	STRG.8063.2,Trinity_GG_21591_c0_g1_i2,blat.proc3829891.chain_353	3
scaffold_25	alt_acceptor	443567	443568	+	asmbl_33324	none	STRG.27072.1	1	STRG.27072.2	1
scaffold_8	retained_intron	16142261	16142410	-	asmbl_53370	none	blat.proc3829891.chain_2742	1	blat.proc3829891.chain_2745	1
scaffold_5	alt_donor	10246962	10246963	-	asmbl_45712	none	Trinity_GG_20541_c0_g1_i2,blat.proc3829889.chain_2339	2	STRG.6317.1,Trinity_GG_20541_c0_g1_i1,blat.proc3829889.chain_2338	3
scaffold_24	alt_donor	4294843	4294844	-	asmbl_32857	none	STRG.26572.1,blat.proc3829899.chain_3631	2	STRG.26572.2,blat.proc3829899.chain_3632	2
scaffold_17	spliced_intron	8317665	8317806	+	asmbl_18099	none	blat.proc3829881.chain_1251	1	STRG.20443.1,blat.proc3829881.chain_1253	2
scaffold_23	skipped_exon	3436537	3437379	+	asmbl_30738	none	blat.proc3829883.chain_2651	1	STRG.25741.1,blat.proc3829883.chain_2650	2
scaffold_16	spliced_intron	4161098	4161202	+	asmbl_16974	none	Trinity_GG_10526_c1_g1_i4,blat.proc3829881.chain_59	2	Trinity_GG_10526_c1_g1_i1,blat.proc3829881.chain_60	2
scaffold_16	alt_acceptor	13214083	13214084	+	asmbl_17459	none	STRG.19770.3	1	STRG.19770.1,STRG.19770.2,blat.proc3829881.chain_595,blat.proc3829881.chain_596,blat.proc3829881.chain_598	5
scaffold_4	alt_donor	6283127	6283128	-	asmbl_41410	none	Trinity_GG_19560_c0_g1_i3,blat.proc3829889.chain_664	2	Trinity_GG_19560_c0_g1_i2,blat.proc3829889.chain_665	2
scaffold_19	ends_in_intron	13173420	13173420	+	asmbl_22676	none	blat.proc3829881.chain_3529	1	STRG.22628.1,Trinity_GG_12483_c0_g1_i3,blat.proc3829881.chain_3526,blat.proc3829881.chain_3527,blat.proc3829881.chain_3528	5
scaffold_14	spliced_intron	2373729	2374187	-	asmbl_12913,asmbl_12916,asmbl_12917,asmbl_12918,asmbl_12919,asmbl_12920	none	STRG.16839.1,STRG.16839.2,STRG.16839.3,STRG.16839.4,blat.proc3829895.chain_1581,blat.proc3829895.chain_1587	6	STRG.16839.5,STRG.16839.6	2
scaffold_4	alt_acceptor	16912454	16912455	+	asmbl_43348	none	STRG.5280.4	1	STRG.5280.1,STRG.5280.2,STRG.5280.5	3
scaffold_10	retained_intron	5536926	5537113	+	asmbl_4461	none	STRG.12363.1,blat.proc3829877.chain_1004	2	STRG.12363.2,blat.proc3829877.chain_1005	2
scaffold_22	alternate_exon	8191321	8191412	-	asmbl_30223	none	STRG.25152.3	1	STRG.25152.1,blat.proc3829899.chain_2243	2
scaffold_20	alt_acceptor	9540928	9540929	-	asmbl_26968	none	STRG.23478.1,Trinity_GG_30105_c0_g1_i1,blat.proc3829899.chain_501	3	STRG.23478.2,Trinity_GG_30105_c0_g1_i2,blat.proc3829899.chain_502	3
scaffold_12	ends_in_intron	14034366	14034366	-	asmbl_8088	none	Trinity_GG_25528_c0_g1_i3,blat.proc3829893.chain_3640	2	STRG.15210.1,Trinity_GG_25528_c0_g1_i1,blat.proc3829893.chain_3641	3
scaffold_16	skipped_exon	14544410	14546401	-	asmbl_16642	none	STRG.19822.2	1	STRG.19822.3,blat.proc3829897.chain_788,blat.proc3829897.chain_789	3
scaffold_10	retained_exon	4336877	4336915	-	asmbl_3198	none	STRG.12268.1,blat.proc3829893.chain_646	2	STRG.12268.2,blat.proc3829893.chain_647	2
scaffold_20	ends_in_intron	3713536	3713536	+	asmbl_25692	none	blat.proc3829883.chain_153	1	STRG.23058.1,STRG.23058.2,blat.proc3829883.chain_155	3
scaffold_4	retained_exon	14982193	14982314	+	asmbl_43254	none	STRG.5108.2	1	STRG.5108.3,blat.proc3829873.chain_1437	2
scaffold_26	alt_donor	4141762	4141763	+	asmbl_35399,asmbl_35400,asmbl_35402	none	STRG.28106.1,STRG.28106.2,STRG.28106.3	3	STRG.28106.4	1
scaffold_15	alt_donor	12781104	12781105	+	asmbl_14551	none	STRG.18727.1,blat.proc3829879.chain_3339	2	STRG.18727.2,blat.proc3829879.chain_3338	2
scaffold_21	alternate_exon	11257953	11258539	-	asmbl_28130	none	STRG.24583.1	1	STRG.24583.2	1
scaffold_3	alt_acceptor	10305545	10305546	+	asmbl_40218	none	STRG.3466.1,Trinity_GG_1968_c0_g2_i1,blat.proc3829871.chain_3656	3	STRG.3466.3	1
scaffold_14	alt_acceptor	1374553	1374554	-	asmbl_12856	none	STRG.16775.2,blat.proc3829895.chain_1489	2	STRG.16775.1,blat.proc3829895.chain_1488,blat.proc3829895.chain_1490	3
scaffold_24	retained_intron	7167433	7167861	+	asmbl_32379,asmbl_32380	none	STRG.26748.1,Trinity_GG_14802_c0_g1_i1,Trinity_GG_14802_c0_g1_i3,blat.proc3829883.chain_3669,blat.proc3829883.chain_3670,blat.proc3829883.chain_3671,blat.proc3829883.chain_3672	7	STRG.26748.2	1
scaffold_27	starts_in_intron	7465388	7465388	+	asmbl_36414	none	Trinity_GG_16107_c0_g1_i2,blat.proc3829885.chain_2217	2	STRG.29088.1,Trinity_GG_16107_c0_g1_i3,blat.proc3829885.chain_2216	3
scaffold_3	retained_intron	17456083	17456973	+	asmbl_40642,asmbl_40643,asmbl_40644	none	STRG.3976.2,Trinity_GG_2205_c0_g1_i4,blat.proc3829873.chain_331,blat.proc3829873.chain_334	4	STRG.3976.4	1
scaffold_15	retained_intron	15907550	15907932	-	asmbl_15825,asmbl_15827	none	Trinity_GG_27666_c0_g1_i1,Trinity_GG_27666_c0_g1_i5,blat.proc3829895.chain_3735,blat.proc3829895.chain_3737	4	STRG.18963.1,Trinity_GG_27666_c0_g1_i3,Trinity_GG_27666_c0_g1_i4,Trinity_GG_27666_c0_g1_i8,Trinity_GG_27666_c0_g1_i9,blat.proc3829895.chain_3732,blat.proc3829895.chain_3733,blat.proc3829895.chain_3734,blat.proc3829895.chain_3736	9
scaffold_12	spliced_intron	6943372	6943864	-	asmbl_7681	none	blat.proc3829893.chain_3139	1	STRG.14749.1,Trinity_GG_25238_c0_g1_i1,Trinity_GG_25240_c0_g1_i2,blat.proc3829893.chain_3140,blat.proc3829893.chain_3142,blat.proc3829893.chain_3143	6
scaffold_2	ends_in_intron	4043881	4043881	-	asmbl_23072	none	Trinity_GG_18051_c0_g1_i2,blat.proc3829887.chain_1712	2	STRG.1848.1,blat.proc3829887.chain_1713	2
scaffold_1	alt_donor	5955192	5955193	+	asmbl_1790,asmbl_1792	none	STRG.392.2,Trinity_GG_229_c0_g1_i1,Trinity_GG_229_c0_g1_i2,blat.proc3829871.chain_386,blat.proc3829871.chain_387	5	STRG.392.1,Trinity_GG_229_c0_g2_i1,blat.proc3829871.chain_388	3
scaffold_43	alt_acceptor	782	783	-	asmbl_43672	none	STRG.30025.3	1	STRG.30025.1,STRG.30025.4	2
scaffold_12	alt_donor	2661785	2661786	+	asmbl_8472	none	blat.proc3829877.chain_2972	1	STRG.14495.1,STRG.14495.3,blat.proc3829877.chain_2969,blat.proc3829877.chain_2970	4
scaffold_1	alt_donor	12942677	12942678	+	asmbl_2266	none	STRG.924.1,blat.proc3829871.chain_1016	2	STRG.924.2	1
scaffold_11	alt_donor	3736430	3736431	-	asmbl_6548	none	STRG.13485.1,blat.proc3829893.chain_1941	2	STRG.13485.2,blat.proc3829893.chain_1942	2
scaffold_9	alternate_exon	16555277	16555306	-	asmbl_55543	none	blat.proc3829893.chain_64	1	STRG.11782.1,blat.proc3829893.chain_65	2
scaffold_19	alternate_exon	3174617	3174690	-	asmbl_21292	none	STRG.21989.1,Trinity_GG_29272_c0_g1_i1	2	STRG.21989.2,blat.proc3829897.chain_2749	2
scaffold_1	alt_acceptor	20349586	20349587	+	asmbl_2602	none	STRG.1398.2	1	STRG.1398.3,STRG.1398.4,STRG.1398.5,STRG.1398.6	4
scaffold_2382	alt_donor	603	604	-	asmbl_32005	none	blat.proc3829885.chain_912	1	STRG.30721.1,blat.proc3829901.chain_3666	2
scaffold_24	starts_in_intron	9953064	9953064	-	asmbl_33149	none	Trinity_GG_32087_c0_g1_i6	1	STRG.26947.1,STRG.26947.3,STRG.26947.4,STRG.26947.8,blat.proc3829901.chain_248,blat.proc3829901.chain_249,blat.proc3829901.chain_250	7
scaffold_22	retained_intron	210328	210515	+	asmbl_29112,asmbl_29113,asmbl_29114,asmbl_29115,asmbl_29116	none	STRG.24661.1,STRG.24661.2,STRG.24661.4,STRG.24661.5,STRG.24661.6,Trinity_GG_13639_c1_g1_i1,blat.proc3829883.chain_1719	7	STRG.24661.3,blat.proc3829883.chain_1720	2
scaffold_4	starts_in_intron	12340785	12340785	-	asmbl_41640	none	blat.proc3829889.chain_936	1	STRG.4867.1,STRG.4867.2,blat.proc3829889.chain_934	3
scaffold_18	retained_intron	13649190	13649215	+	asmbl_21049	none	STRG.21786.2	1	blat.proc3829881.chain_2743	1
scaffold_4	alt_acceptor	5652387	5652388	-	asmbl_41354	none	STRG.4469.3	1	STRG.4469.2,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_604,blat.proc3829889.chain_606,blat.proc3829889.chain_608,blat.proc3829889.chain_611,blat.proc3829889.chain_612,blat.proc3829889.chain_613	9
scaffold_15	alt_donor	12601908	12601909	+	asmbl_14525	none	STRG.18704.2,blat.proc3829879.chain_3324	2	STRG.18704.1,blat.proc3829879.chain_3323	2
scaffold_28	ends_in_intron	7306349	7306349	-	asmbl_37719	none	STRG.29781.5,blat.proc3829901.chain_2848	2	STRG.29781.4	1
scaffold_3	starts_in_intron	16072087	16072087	+	asmbl_40566	none	STRG.3888.3	1	STRG.3888.1,STRG.3888.2,blat.proc3829873.chain_286,blat.proc3829873.chain_287	4
scaffold_21	skipped_exon	3162883	3165288	+	asmbl_28479,asmbl_28481,asmbl_28483,asmbl_28487,asmbl_28492,asmbl_28493,asmbl_28494	none	STRG.23945.1,STRG.23945.2,STRG.23945.4,STRG.23945.5,blat.proc3829883.chain_1050,blat.proc3829883.chain_1052,blat.proc3829883.chain_1053,blat.proc3829883.chain_1054,blat.proc3829883.chain_1055	9	STRG.23945.3,blat.proc3829883.chain_1049,blat.proc3829883.chain_1051,blat.proc3829883.chain_1056	4
scaffold_1	retained_intron	11173731	11174990	+	asmbl_2064,asmbl_2076,asmbl_2077	none	STRG.743.1,blat.proc3829871.chain_818,blat.proc3829871.chain_820,blat.proc3829871.chain_821,blat.proc3829871.chain_825	5	STRG.743.2,blat.proc3829871.chain_814	2
scaffold_27	retained_intron	5049880	5050708	-	asmbl_36936,asmbl_36938	none	STRG.28917.1,STRG.28917.5,Trinity_GG_33220_c0_g1_i9,blat.proc3829901.chain_2107	4	STRG.28917.4	1
scaffold_7	ends_in_intron	13212664	13212664	+	asmbl_51202,asmbl_51204	none	STRG.9420.1,STRG.9420.2,blat.proc3829875.chain_1883,blat.proc3829875.chain_1884	4	STRG.9420.3,STRG.9420.4,blat.proc3829875.chain_1880,blat.proc3829875.chain_1882	4
scaffold_10	alt_acceptor	925771	925772	-	asmbl_2930	none	STRG.11959.2	1	STRG.11959.1,Trinity_GG_23671_c0_g1_i2,blat.proc3829893.chain_421	3
scaffold_13	retained_intron	7192850	7192955	-	asmbl_9821	none	Trinity_GG_26037_c0_g1_i6,blat.proc3829895.chain_845	2	STRG.16001.4,blat.proc3829895.chain_842	2
scaffold_15	ends_in_intron	6104095	6104095	-	asmbl_15259	none	Trinity_GG_27287_c0_g1_i4,blat.proc3829895.chain_3034	2	STRG.18262.1,blat.proc3829895.chain_3032,blat.proc3829895.chain_3033	3
scaffold_15	starts_in_intron	12742331	12742331	+	asmbl_14547	none	STRG.18731.5	1	STRG.18731.1,STRG.18731.2,STRG.18731.3,STRG.18731.4,blat.proc3829879.chain_3350,blat.proc3829879.chain_3351,blat.proc3829879.chain_3352,blat.proc3829879.chain_3353	8
scaffold_15	retained_intron	1504460	1504656	-	asmbl_14966	none	Trinity_GG_27097_c0_g1_i2,Trinity_GG_27097_c0_g1_i5,blat.proc3829895.chain_2659,blat.proc3829895.chain_2660	4	STRG.17945.2,blat.proc3829895.chain_2658	2
scaffold_5	spliced_intron	16258346	16258731	+	asmbl_44725	none	STRG.6805.1,Trinity_GG_3697_c0_g1_i2	2	Trinity_GG_3697_c0_g1_i1	1
scaffold_11	alternate_exon	6713606	6713665	-	asmbl_6716,asmbl_6718	none	STRG.13703.6,Trinity_GG_24701_c0_g1_i5,blat.proc3829893.chain_2181	3	STRG.13703.1,STRG.13703.2,STRG.13703.4,STRG.13703.5,blat.proc3829893.chain_2180,blat.proc3829893.chain_2182	6
scaffold_13	spliced_intron	8235692	8236213	-	asmbl_9918,asmbl_9919,asmbl_9920	none	STRG.16101.1,blat.proc3829895.chain_898,blat.proc3829895.chain_899,blat.proc3829895.chain_900	4	blat.proc3829895.chain_901	1
scaffold_12	alternate_exon	4983875	4986637	+	asmbl_8586	none	STRG.14656.1,blat.proc3829877.chain_3082	2	blat.proc3829877.chain_3084	1
scaffold_18	alt_acceptor	632851	632852	+	asmbl_20336	none	STRG.20993.1,blat.proc3829881.chain_1871	2	STRG.20993.3	1
scaffold_13	alt_acceptor	11850503	11850504	-	asmbl_10072	none	STRG.16305.1	1	STRG.16305.2	1
scaffold_5	skipped_exon	19031567	19031895	-	asmbl_46259,asmbl_46261,asmbl_46262,asmbl_46267	none	STRG.7018.3,STRG.7018.5,STRG.7018.7,Trinity_GG_20922_c0_g1_i8,blat.proc3829889.chain_3008,blat.proc3829889.chain_3009,blat.proc3829889.chain_3010	7	STRG.7018.4,blat.proc3829889.chain_3003,blat.proc3829889.chain_3006	3
scaffold_21	retained_exon	737050	737193	+	asmbl_28318	none	STRG.23750.2,blat.proc3829883.chain_919	2	STRG.23750.1,Trinity_GG_13167_c0_g1_i2,blat.proc3829883.chain_920	3
scaffold_2	spliced_intron	8875113	8876256	+	asmbl_24690,asmbl_24692	none	STRG.2139.4,blat.proc3829871.chain_2260	2	STRG.2139.1,STRG.2139.2,STRG.2139.3,blat.proc3829871.chain_2259	4
scaffold_17	starts_in_intron	7061656	7061656	-	asmbl_19070	none	blat.proc3829897.chain_1343	1	Trinity_GG_28473_c0_g1_i1,blat.proc3829897.chain_1342	2
scaffold_13	alt_donor	15511199	15511200	+	asmbl_11493	none	STRG.16580.3	1	STRG.16580.4	1
scaffold_11	alternate_exon	6252374	6252705	+	asmbl_5590	none	blat.proc3829877.chain_2181	1	STRG.13670.1,blat.proc3829877.chain_2180	2
scaffold_26	alternate_exon	4571924	4572028	-	asmbl_34839	none	STRG.28157.2,blat.proc3829901.chain_1343	2	STRG.28157.1,blat.proc3829901.chain_1342	2
scaffold_5	starts_in_intron	10851594	10851594	+	asmbl_44372,asmbl_44373	none	STRG.6350.4,blat.proc3829873.chain_2515	2	STRG.6350.1,STRG.6350.3,blat.proc3829873.chain_2512,blat.proc3829873.chain_2513,blat.proc3829873.chain_2514,blat.proc3829873.chain_2516	6
scaffold_1	ends_in_intron	7293183	7293183	-	asmbl_436	none	Trinity_GG_17300_c2_g1_i1,blat.proc3829887.chain_424	2	STRG.527.1,STRG.527.2,blat.proc3829887.chain_420,blat.proc3829887.chain_421	4
scaffold_27	alternate_exon	6196555	6199246	+	asmbl_36335,asmbl_36336	none	STRG.28993.1,STRG.28993.4,Trinity_GG_16045_c0_g1_i1,Trinity_GG_16045_c0_g1_i2,blat.proc3829885.chain_2121,blat.proc3829885.chain_2122	6	STRG.28993.2	1
scaffold_1	retained_intron	2782343	2782775	-	asmbl_132,asmbl_133	none	STRG.172.1,Trinity_GG_17117_c0_g1_i1,blat.proc3829887.chain_74,blat.proc3829887.chain_75	4	STRG.172.2,blat.proc3829887.chain_73	2
scaffold_2	retained_intron	690723	690918	+	asmbl_24117	none	STRG.1553.3	1	STRG.1553.4	1
scaffold_17	spliced_intron	8626956	8627047	+	asmbl_18137	none	STRG.20466.1,Trinity_GG_11185_c0_g1_i3,blat.proc3829881.chain_1210	3	Trinity_GG_11185_c0_g1_i1,blat.proc3829881.chain_1209	2
scaffold_8	alt_acceptor	4238920	4238921	-	asmbl_52760,asmbl_52762	none	STRG.9900.1,blat.proc3829891.chain_1990	2	STRG.9900.2,blat.proc3829891.chain_1987,blat.proc3829891.chain_1988	3
scaffold_13	spliced_intron	3264232	3264348	+	asmbl_10658	none	STRG.15620.1,blat.proc3829879.chain_336	2	blat.proc3829879.chain_335,blat.proc3829879.chain_337	2
scaffold_2	retained_intron	14191448	14192045	-	asmbl_23579,asmbl_23580,asmbl_23585,asmbl_23586	none	STRG.2417.1,Trinity_GG_18310_c0_g1_i1,blat.proc3829887.chain_2210,blat.proc3829887.chain_2211,blat.proc3829887.chain_2212	5	STRG.2417.2,blat.proc3829887.chain_2207,blat.proc3829887.chain_2208,blat.proc3829887.chain_2209	4
scaffold_2	retained_exon	9190269	9190308	-	asmbl_23382	none	Trinity_GG_18242_c0_g1_i7,blat.proc3829887.chain_2104	2	STRG.2167.2,Trinity_GG_18242_c0_g1_i1,Trinity_GG_18242_c0_g1_i3,blat.proc3829887.chain_2099,blat.proc3829887.chain_2100	5
scaffold_11	spliced_intron	14587104	14588383	+	asmbl_6074	none	STRG.14246.1,blat.proc3829877.chain_2756	2	STRG.14246.3,blat.proc3829877.chain_2755	2
scaffold_24	spliced_intron	2514768	2515066	+	asmbl_32112,asmbl_32114	none	STRG.26452.1,STRG.26452.2,blat.proc3829883.chain_3355	3	STRG.26452.3,blat.proc3829883.chain_3353	2
scaffold_27	alt_donor	980879	980880	+	asmbl_35940	none	STRG.28575.2	1	STRG.28575.1,Trinity_GG_15813_c0_g1_i1,blat.proc3829885.chain_1610	3
scaffold_23	retained_exon	7662287	7662625	+	asmbl_31001	none	blat.proc3829883.chain_2932	1	blat.proc3829883.chain_2933	1
scaffold_1	alternate_exon	6818050	6818618	-	asmbl_387	none	STRG.476.1,Trinity_GG_17280_c2_g1_i1,blat.proc3829887.chain_384	3	blat.proc3829887.chain_383	1
scaffold_15	alt_acceptor	15857501	15857502	+	asmbl_14773,asmbl_14776,asmbl_14777,asmbl_14780,asmbl_14781	none	STRG.18964.3,STRG.18964.5,STRG.18964.6,Trinity_GG_10383_c0_g1_i3,Trinity_GG_10383_c0_g1_i7,blat.proc3829879.chain_3538,blat.proc3829879.chain_3539,blat.proc3829879.chain_3540,blat.proc3829879.chain_3542,blat.proc3829879.chain_3543	10	STRG.18964.1,STRG.18964.4	2
scaffold_14	ends_in_intron	2129616	2129616	-	asmbl_12900	none	Trinity_GG_26440_c0_g2_i1,blat.proc3829895.chain_1532	2	STRG.16822.1,Trinity_GG_26440_c0_g1_i4,Trinity_GG_26440_c0_g1_i9,blat.proc3829895.chain_1527,blat.proc3829895.chain_1529,blat.proc3829895.chain_1530	6
scaffold_23	spliced_intron	4449754	4449915	-	asmbl_31588	none	STRG.25842.3,Trinity_GG_31473_c0_g1_i1,blat.proc3829899.chain_2970	3	STRG.25842.4,Trinity_GG_31473_c0_g1_i2,Trinity_GG_31473_c0_g1_i5,Trinity_GG_31473_c0_g1_i6,blat.proc3829899.chain_2967,blat.proc3829899.chain_2968,blat.proc3829899.chain_2969	7
scaffold_12	alt_donor	10004419	10004420	-	asmbl_7843	none	STRG.14963.1	1	STRG.14963.3	1
scaffold_10	starts_in_intron	7671723	7671723	+	asmbl_4574,asmbl_4575	none	STRG.12547.3,STRG.12547.4	2	STRG.12547.2	1
scaffold_11	starts_in_intron	3516890	3516890	+	asmbl_5406,asmbl_5407	none	STRG.13473.4,Trinity_GG_7414_c0_g1_i5,blat.proc3829877.chain_1973	3	STRG.13473.1,blat.proc3829877.chain_1976	2
scaffold_9	alt_acceptor	8027771	8027772	-	asmbl_55080,asmbl_55082	none	STRG.11218.2,blat.proc3829891.chain_3378,blat.proc3829891.chain_3379	3	STRG.11218.1,blat.proc3829891.chain_3380	2
scaffold_26	alt_acceptor	6350832	6350833	-	asmbl_34953	none	STRG.28315.3,blat.proc3829901.chain_1404	2	STRG.28315.2,STRG.28315.4,STRG.28315.5,blat.proc3829901.chain_1403,blat.proc3829901.chain_1406	5
scaffold_13	ends_in_intron	366659	366659	-	asmbl_9278	none	Trinity_GG_25666_c0_g1_i16,blat.proc3829895.chain_160	2	STRG.15426.1,STRG.15426.3,STRG.15426.5	3
scaffold_21	skipped_exon	690867	693822	+	asmbl_28306	none	STRG.23742.1	1	STRG.23742.2	1
scaffold_9	starts_in_intron	16384854	16384854	+	asmbl_54570	none	Trinity_GG_6572_c0_g1_i4,blat.proc3829877.chain_530	2	STRG.11784.1,STRG.11784.2,blat.proc3829877.chain_531	3
scaffold_7	alt_acceptor	2149897	2149898	+	asmbl_50504	none	STRG.8650.1,Trinity_GG_4750_c0_g1_i2	2	STRG.8650.2,Trinity_GG_4750_c0_g1_i1	2
scaffold_26	alt_acceptor	4819809	4819810	+	asmbl_35454	none	blat.proc3829885.chain_1144	1	STRG.28182.1,STRG.28182.2,blat.proc3829885.chain_1145,blat.proc3829885.chain_1146,blat.proc3829885.chain_1147	5
scaffold_1	skipped_exon	12448553	12450376	+	asmbl_2205,asmbl_2208	none	STRG.856.3,Trinity_GG_494_c0_g1_i3,Trinity_GG_494_c0_g1_i6,blat.proc3829871.chain_882,blat.proc3829871.chain_887	5	STRG.856.2,STRG.856.4,STRG.856.5,Trinity_GG_494_c0_g1_i1,Trinity_GG_494_c0_g1_i5,Trinity_GG_494_c0_g1_i8,blat.proc3829871.chain_883,blat.proc3829871.chain_884,blat.proc3829871.chain_888	9
scaffold_14	alt_acceptor	9600481	9600482	+	asmbl_12274	none	STRG.17334.1,blat.proc3829879.chain_2022	2	STRG.17334.2	1
scaffold_2	alt_donor	8068255	8068256	-	asmbl_23332	none	STRG.2104.2,Trinity_GG_18185_c0_g1_i1,blat.proc3829887.chain_2002	3	STRG.2104.1	1
scaffold_27	alternate_exon	975197	976500	+	asmbl_35937	none	Trinity_GG_15816_c0_g1_i2,blat.proc3829885.chain_1619	2	Trinity_GG_15816_c0_g2_i1,blat.proc3829885.chain_1622	2
scaffold_4	alt_acceptor	4095842	4095843	+	asmbl_42545	none	STRG.4313.3,blat.proc3829873.chain_636	2	STRG.4313.1,STRG.4313.4,blat.proc3829873.chain_631,blat.proc3829873.chain_635	4
scaffold_23	alternate_exon	4097681	4099714	-	asmbl_31553	none	STRG.25802.2	1	Trinity_GG_31457_c0_g1_i5,blat.proc3829899.chain_2935,blat.proc3829899.chain_2936	3
scaffold_4	starts_in_intron	10957163	10957163	+	asmbl_43021	none	Trinity_GG_2706_c0_g1_i1,blat.proc3829873.chain_1194	2	STRG.4816.1,STRG.4816.2,blat.proc3829873.chain_1190,blat.proc3829873.chain_1191,blat.proc3829873.chain_1192,blat.proc3829873.chain_1193	6
scaffold_8	starts_in_intron	9928139	9928139	-	asmbl_53072	none	blat.proc3829891.chain_2339	1	STRG.10237.1,STRG.10237.2,blat.proc3829891.chain_2340	3
scaffold_10	spliced_intron	9042003	9042107	+	asmbl_4637	none	STRG.12644.1,blat.proc3829877.chain_1219	2	Trinity_GG_6976_c0_g1_i1,Trinity_GG_6976_c0_g1_i2,blat.proc3829877.chain_1218,blat.proc3829877.chain_1220	4
scaffold_27	alternate_exon	8934864	8936061	-	asmbl_37074	none	STRG.29117.1	1	STRG.29117.2	1
scaffold_18	alt_donor	10293261	10293262	-	asmbl_20134,asmbl_20135	none	STRG.21618.1,STRG.21618.2,blat.proc3829897.chain_2457	3	STRG.21618.3	1
scaffold_21	spliced_intron	3824094	3824282	-	asmbl_27574,asmbl_27579	none	STRG.23959.3,blat.proc3829899.chain_1044,blat.proc3829899.chain_1046	3	STRG.23959.2,STRG.23959.4,blat.proc3829899.chain_1041,blat.proc3829899.chain_1045	4
scaffold_4	skipped_exon	19443462	19444949	+	asmbl_43493	none	STRG.5530.2	1	STRG.5530.1	1
scaffold_22	retained_exon	4434690	4434788	-	asmbl_30031	none	Trinity_GG_30894_c0_g1_i2,blat.proc3829899.chain_1966	2	STRG.24854.1,Trinity_GG_30894_c0_g1_i1,blat.proc3829899.chain_1967	3
scaffold_21	skipped_exon	58137	58705	-	asmbl_27299	none	STRG.23706.2,blat.proc3829899.chain_735	2	STRG.23706.1,STRG.23706.3,blat.proc3829899.chain_734,blat.proc3829899.chain_736	4
scaffold_3	alt_donor	12943170	12943171	-	asmbl_39193,asmbl_39195	none	STRG.3670.1,STRG.3670.3,Trinity_GG_19027_c0_g1_i1,blat.proc3829887.chain_3443	4	STRG.3670.2,Trinity_GG_19027_c0_g1_i2,blat.proc3829887.chain_3444	3
scaffold_18	alt_donor	4848613	4848614	+	asmbl_20601	none	STRG.21267.3,Trinity_GG_11716_c0_g1_i6,blat.proc3829881.chain_2170	3	STRG.21267.2,Trinity_GG_11716_c0_g1_i2,blat.proc3829881.chain_2174	3
scaffold_25	alt_acceptor	842571	842572	-	asmbl_33997	none	STRG.27125.1	1	STRG.27125.2,blat.proc3829901.chain_446	2
scaffold_5	skipped_exon	237071	239063	-	asmbl_45153	none	STRG.5594.4	1	STRG.5594.1,STRG.5594.2,STRG.5594.3,Trinity_GG_20172_c0_g1_i1,blat.proc3829889.chain_1710	5
scaffold_356	alt_acceptor	3909	3910	+	asmbl_40995	none	STRG.30273.2	1	STRG.30273.1	1
scaffold_13	retained_intron	3027963	3028113	-	asmbl_9467	none	STRG.15593.1,blat.proc3829895.chain_370	2	STRG.15593.2	1
scaffold_1	alt_acceptor	19841731	19841732	+	asmbl_2588	none	STRG.1362.3,blat.proc3829871.chain_1397	2	STRG.1362.1,STRG.1362.2,blat.proc3829871.chain_1396	3
scaffold_16	alternate_exon	6115896	6118441	+	asmbl_17058	none	STRG.19331.1,blat.proc3829881.chain_189	2	STRG.19331.2	1
scaffold_20	starts_in_intron	6948468	6948468	-	asmbl_26772	none	STRG.23254.4,blat.proc3829899.chain_236	2	STRG.23254.2,STRG.23254.3,STRG.23254.5,blat.proc3829899.chain_235	4
scaffold_1	retained_exon	7284196	7284224	-	asmbl_431	none	STRG.525.2,blat.proc3829887.chain_351	2	STRG.525.1,blat.proc3829887.chain_352	2
scaffold_18	retained_intron	8911050	8911533	-	asmbl_20082	none	STRG.21550.1	1	STRG.21550.2,STRG.21550.3,STRG.21550.4,STRG.21550.5,STRG.21550.6,blat.proc3829897.chain_2394,blat.proc3829897.chain_2395,blat.proc3829897.chain_2398	8
scaffold_6	starts_in_intron	14723932	14723932	+	asmbl_47577	none	STRG.8230.1,blat.proc3829875.chain_659	2	blat.proc3829875.chain_658	1
scaffold_14	alternate_exon	2373145	2379388	-	asmbl_12920	none	STRG.16839.4	1	STRG.16839.9	1
scaffold_5	alternate_exon	19274911	19275221	+	asmbl_44965	none	STRG.7020.2,Trinity_GG_3869_c0_g1_i2,blat.proc3829873.chain_3181	3	STRG.7020.1,Trinity_GG_3869_c0_g1_i3,blat.proc3829873.chain_3182	3
scaffold_22	alt_donor	7437761	7437762	-	asmbl_30165,asmbl_30166,asmbl_30167	none	STRG.25066.1,STRG.25066.3,STRG.25066.4,blat.proc3829899.chain_2153,blat.proc3829899.chain_2155	5	STRG.25066.2,STRG.25066.5,blat.proc3829899.chain_2152,blat.proc3829899.chain_2154	4
scaffold_4	spliced_intron	105414	105497	-	asmbl_41044	none	Trinity_GG_19304_c1_g1_i4,blat.proc3829889.chain_226	2	blat.proc3829889.chain_225	1
scaffold_11	alternate_exon	7096152	7096185	+	asmbl_5624	none	STRG.13724.2,Trinity_GG_7524_c0_g1_i1,blat.proc3829877.chain_2148	3	STRG.13724.1,Trinity_GG_7524_c0_g1_i2,blat.proc3829877.chain_2147	3
scaffold_6	ends_in_intron	12007198	12007198	+	asmbl_47305	none	Trinity_GG_4306_c0_g1_i4,blat.proc3829875.chain_235	2	STRG.7963.1	1
scaffold_1	retained_intron	16095601	16095685	-	asmbl_976	none	STRG.1128.2,blat.proc3829887.chain_1023	2	blat.proc3829887.chain_1025	1
scaffold_6	ends_in_intron	12626580	12626580	-	asmbl_48772,asmbl_48773,asmbl_48774,asmbl_48775	none	Trinity_GG_21546_c0_g1_i6,blat.proc3829891.chain_252,blat.proc3829891.chain_253,blat.proc3829891.chain_255,blat.proc3829891.chain_258	5	STRG.8013.1,Trinity_GG_21546_c0_g1_i1,Trinity_GG_21546_c0_g1_i2,blat.proc3829891.chain_254,blat.proc3829891.chain_256	5
scaffold_20	alt_donor	11380307	11380308	+	asmbl_26194	none	STRG.23634.4	1	STRG.23634.1,STRG.23634.2,STRG.23634.3,STRG.23634.5,Trinity_GG_13050_c0_g1_i1,Trinity_GG_13050_c0_g1_i2,Trinity_GG_13050_c0_g1_i4,blat.proc3829883.chain_704,blat.proc3829883.chain_705,blat.proc3829883.chain_707	10
scaffold_19	spliced_intron	8258058	8258133	+	asmbl_22311	none	STRG.22271.1,blat.proc3829881.chain_3183	2	blat.proc3829881.chain_3182	1
scaffold_23	retained_exon	7684372	7685166	+	asmbl_31007,asmbl_31008,asmbl_31014	none	STRG.26063.1,STRG.26063.3,STRG.26063.5,Trinity_GG_14406_c0_g1_i3,Trinity_GG_14406_c0_g1_i4,blat.proc3829883.chain_2977,blat.proc3829883.chain_2978	7	STRG.26063.6	1
scaffold_1	alt_acceptor	849736	849737	+	asmbl_1414	none	STRG.41.5,Trinity_GG_29_c0_g1_i3,blat.proc3829871.chain_51	3	STRG.41.1,Trinity_GG_29_c0_g1_i2,blat.proc3829871.chain_52	3
scaffold_10	spliced_intron	5857610	5858338	-	asmbl_3319	none	blat.proc3829893.chain_873	1	Trinity_GG_23943_c0_g1_i1,blat.proc3829893.chain_870,blat.proc3829893.chain_871	3
scaffold_11	retained_intron	10981902	10982289	-	asmbl_6987	none	STRG.14049.1,Trinity_GG_24863_c0_g1_i1,blat.proc3829893.chain_2467	3	STRG.14049.3	1
scaffold_28	starts_in_intron	5230887	5230887	-	asmbl_37585	none	STRG.29650.2	1	STRG.29650.1,blat.proc3829901.chain_2671,blat.proc3829901.chain_2672	3
scaffold_4	retained_intron	17032148	17032361	+	asmbl_43365	none	blat.proc3829873.chain_1569	1	STRG.5305.2,STRG.5305.3,blat.proc3829873.chain_1570	3
scaffold_2	alt_acceptor	483875	483876	-	asmbl_22829,asmbl_22830	none	STRG.1533.1,STRG.1533.3,blat.proc3829887.chain_1416	3	STRG.1533.2	1
scaffold_18	starts_in_intron	1897408	1897408	-	asmbl_19697,asmbl_19698	none	blat.proc3829897.chain_1891,blat.proc3829897.chain_1893,blat.proc3829897.chain_1895	3	STRG.21072.10,STRG.21072.4,STRG.21072.6,STRG.21072.7,STRG.21072.9,blat.proc3829897.chain_1890,blat.proc3829897.chain_1897,blat.proc3829897.chain_1898,blat.proc3829897.chain_1899,blat.proc3829897.chain_1901,blat.proc3829897.chain_1902	11
scaffold_18	alt_acceptor	2061694	2061695	-	asmbl_19737	none	STRG.21083.1,Trinity_GG_28836_c0_g1_i2,blat.proc3829897.chain_1999	3	STRG.21083.2,Trinity_GG_28836_c0_g1_i1,blat.proc3829897.chain_1998	3
scaffold_7	alt_acceptor	13236148	13236149	+	asmbl_51214	none	STRG.9424.1,blat.proc3829875.chain_1888	2	STRG.9424.2	1
scaffold_5	retained_intron	8746681	8747979	+	asmbl_44228	none	STRG.6200.2,blat.proc3829873.chain_2339	2	STRG.6200.1,Trinity_GG_3381_c0_g1_i3,Trinity_GG_3381_c0_g1_i5,blat.proc3829873.chain_2338,blat.proc3829873.chain_2342	5
scaffold_3	alt_acceptor	3315226	3315227	+	asmbl_39911	none	blat.proc3829887.chain_2846	1	blat.proc3829887.chain_2845	1
scaffold_4	alt_acceptor	13076427	13076428	+	asmbl_43108,asmbl_43109,asmbl_43111,asmbl_43112,asmbl_43114	none	STRG.4945.1,STRG.4945.2,STRG.4945.3,STRG.4945.5,blat.proc3829873.chain_1237,blat.proc3829873.chain_1238,blat.proc3829873.chain_1240	7	STRG.4945.4,blat.proc3829873.chain_1239	2
scaffold_17	starts_in_intron	7050561	7050561	+	asmbl_18020	none	Trinity_GG_11134_c2_g1_i1,blat.proc3829881.chain_1123	2	STRG.20358.2,blat.proc3829881.chain_1120,blat.proc3829881.chain_1121	3
scaffold_8	retained_intron	16499427	16499685	-	asmbl_53420,asmbl_53421,asmbl_53423,asmbl_53425,asmbl_53427,asmbl_53429	none	STRG.10621.3,STRG.10621.4,blat.proc3829891.chain_2859,blat.proc3829891.chain_2862,blat.proc3829891.chain_2865,blat.proc3829891.chain_2871	6	STRG.10621.1,Trinity_GG_22960_c0_g1_i18,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2857,blat.proc3829891.chain_2864,blat.proc3829891.chain_2868,blat.proc3829891.chain_2870	8
scaffold_2	alt_acceptor	11598059	11598060	+	asmbl_24794,asmbl_24796	none	STRG.2273.2,STRG.2273.3,blat.proc3829871.chain_2300,blat.proc3829871.chain_2301,blat.proc3829871.chain_2303	5	STRG.2273.1,blat.proc3829871.chain_2298	2
scaffold_12	spliced_intron	7422596	7422854	-	asmbl_7712	none	STRG.14807.1,blat.proc3829893.chain_3200	2	blat.proc3829893.chain_3198,blat.proc3829893.chain_3201	2
scaffold_28	retained_intron	2724505	2724705	+	asmbl_38105	none	blat.proc3829885.chain_2565	1	STRG.29438.1,STRG.29438.2,STRG.29438.3,blat.proc3829885.chain_2562,blat.proc3829885.chain_2563	5
scaffold_23	starts_in_intron	4090755	4090755	+	asmbl_30781	none	Trinity_GG_14243_c0_g1_i1,blat.proc3829883.chain_2693	2	STRG.25798.1,STRG.25798.2,blat.proc3829883.chain_2692	3
scaffold_10	alt_acceptor	4051045	4051046	+	asmbl_4382	none	STRG.12236.2	1	STRG.12236.1,Trinity_GG_6793_c1_g1_i1,Trinity_GG_6793_c1_g1_i2,blat.proc3829877.chain_911,blat.proc3829877.chain_912	5
scaffold_27	spliced_intron	314737	315174	-	asmbl_36616	none	STRG.28538.3	1	STRG.28538.1,STRG.28538.2,blat.proc3829901.chain_1673	3
scaffold_17	starts_in_intron	5693701	5693701	+	asmbl_17957	none	blat.proc3829881.chain_1063	1	STRG.20260.1,STRG.20260.3,Trinity_GG_11101_c0_g1_i2,blat.proc3829881.chain_1065	4
scaffold_26	ends_in_intron	6480486	6480486	-	asmbl_34959	none	Trinity_GG_32843_c0_g1_i1,blat.proc3829901.chain_1483	2	STRG.28325.1,blat.proc3829901.chain_1482	2
scaffold_10	retained_intron	3039893	3040106	+	asmbl_4301	none	blat.proc3829877.chain_753	1	STRG.12116.1,STRG.12116.2,Trinity_GG_6702_c0_g1_i1,blat.proc3829877.chain_754,blat.proc3829877.chain_755	5
scaffold_1	retained_intron	12450440	12450558	+	asmbl_2206	none	Trinity_GG_494_c0_g1_i4,blat.proc3829871.chain_885	2	STRG.856.1,STRG.856.2,STRG.856.3,STRG.856.4,Trinity_GG_494_c0_g1_i1,Trinity_GG_494_c0_g1_i6,blat.proc3829871.chain_881,blat.proc3829871.chain_882,blat.proc3829871.chain_884	9
scaffold_13	retained_intron	2334729	2334832	+	asmbl_10564	none	STRG.15543.5,Trinity_GG_8511_c1_g1_i3,blat.proc3829879.chain_166	3	STRG.15543.4,STRG.15543.8,STRG.15543.9,blat.proc3829879.chain_175	4
scaffold_4	alternate_exon	1907279	1907339	+	asmbl_42464	none	STRG.4202.2,blat.proc3829873.chain_556	2	STRG.4202.1	1
scaffold_28	alternate_exon	3542908	3542935	-	asmbl_37485	none	STRG.29547.3	1	STRG.29547.1,STRG.29547.2,blat.proc3829901.chain_2643,blat.proc3829901.chain_2644	4
scaffold_13	spliced_intron	12253613	12253769	+	asmbl_11329	none	STRG.16339.1,Trinity_GG_8947_c0_g1_i3,blat.proc3829879.chain_1007	3	blat.proc3829879.chain_1005	1
scaffold_5	alt_acceptor	4696466	4696467	+	asmbl_43952	none	STRG.5917.2	1	STRG.5917.3,STRG.5917.4,blat.proc3829873.chain_2093,blat.proc3829873.chain_2094	4
scaffold_9	retained_exon	6846822	6846917	-	asmbl_55037,asmbl_55040	none	STRG.11185.2,STRG.11185.4,blat.proc3829891.chain_3258,blat.proc3829891.chain_3259	4	STRG.11185.3	1
scaffold_20	alt_donor	207498	207499	-	asmbl_26398	none	STRG.22689.1,blat.proc3829897.chain_3479	2	STRG.22689.2,blat.proc3829897.chain_3480	2
scaffold_5	ends_in_intron	5848752	5848752	-	asmbl_45451	none	Trinity_GG_20389_c1_g2_i1,blat.proc3829889.chain_2080	2	blat.proc3829889.chain_2081	1
scaffold_3	skipped_exon	13724899	13726970	-	asmbl_39243	none	Trinity_GG_19028_c0_g1_i2,blat.proc3829887.chain_3445	2	STRG.3718.1,Trinity_GG_19028_c0_g1_i3,Trinity_GG_19028_c0_g1_i4,Trinity_GG_19028_c0_g1_i5,blat.proc3829887.chain_3446,blat.proc3829887.chain_3447,blat.proc3829887.chain_3448	7
scaffold_5	retained_intron	16519694	16519798	-	asmbl_46130	none	blat.proc3829889.chain_2879	1	STRG.6833.1,STRG.6833.2,blat.proc3829889.chain_2876,blat.proc3829889.chain_2877	4
scaffold_10	retained_intron	6065331	6066224	+	asmbl_4500,asmbl_4501,asmbl_4502,asmbl_4503	none	STRG.12431.1,STRG.12431.2,STRG.12431.3,Trinity_GG_6895_c0_g1_i2,blat.proc3829877.chain_1065,blat.proc3829877.chain_1067,blat.proc3829877.chain_1069,blat.proc3829877.chain_1070,blat.proc3829877.chain_1072,blat.proc3829877.chain_1073	10	STRG.12431.4,STRG.12431.5,blat.proc3829877.chain_1066,blat.proc3829877.chain_1068,blat.proc3829877.chain_1071	5
scaffold_7	ends_in_intron	4055977	4055977	+	asmbl_50594	none	blat.proc3829875.chain_1128	1	STRG.8796.1,blat.proc3829875.chain_1126	2
scaffold_27	alt_acceptor	4239947	4239948	+	asmbl_36225	none	STRG.28861.2	1	STRG.28861.1,blat.proc3829885.chain_1932	2
scaffold_11	spliced_intron	170652	170917	+	asmbl_5217	none	STRG.13231.5	1	STRG.13231.3	1
scaffold_11	spliced_intron	1285094	1285198	-	asmbl_6393,asmbl_6394,asmbl_6395	none	STRG.13311.1,STRG.13311.2,blat.proc3829893.chain_1747,blat.proc3829893.chain_1749,blat.proc3829893.chain_1751	5	blat.proc3829893.chain_1748	1
scaffold_4	spliced_intron	17622846	17622975	+	asmbl_43410	none	STRG.5352.1,blat.proc3829873.chain_1595	2	STRG.5352.2,blat.proc3829873.chain_1594	2
scaffold_20	skipped_exon	2403016	2404377	+	asmbl_25643,asmbl_25644	none	STRG.22962.1,blat.proc3829883.chain_92	2	STRG.22962.2,blat.proc3829883.chain_91,blat.proc3829883.chain_93	3
scaffold_8	skipped_exon	17463643	17464507	-	asmbl_53471	none	STRG.10661.2,blat.proc3829891.chain_2825	2	STRG.10661.1,blat.proc3829891.chain_2826	2
scaffold_3	alternate_exon	6233566	6238088	-	asmbl_38874,asmbl_38875,asmbl_38877	none	STRG.3276.1,STRG.3276.2,STRG.3276.3,blat.proc3829887.chain_2933,blat.proc3829887.chain_2935,blat.proc3829887.chain_2936	6	STRG.3276.4	1
scaffold_11	retained_intron	11943634	11943839	-	asmbl_7027	none	Trinity_GG_24916_c5_g1_i1,blat.proc3829893.chain_2568	2	STRG.14160.2,STRG.14160.3,STRG.14160.4,STRG.14160.5,STRG.14160.6,blat.proc3829893.chain_2558	6
scaffold_15	retained_intron	13325003	13325087	+	asmbl_14574,asmbl_14577,asmbl_14578,asmbl_14580,asmbl_14582	none	Trinity_GG_10264_c0_g1_i6,blat.proc3829879.chain_3296,blat.proc3829879.chain_3298,blat.proc3829879.chain_3299,blat.proc3829879.chain_3302,blat.proc3829879.chain_3304	6	STRG.18763.1,Trinity_GG_10264_c0_g1_i2,blat.proc3829879.chain_3300,blat.proc3829879.chain_3301,blat.proc3829879.chain_3303	5
scaffold_5	ends_in_intron	6348517	6348517	+	asmbl_44087	none	blat.proc3829873.chain_2239	1	STRG.6036.1,blat.proc3829873.chain_2238	2
scaffold_4	starts_in_intron	5647931	5647931	-	asmbl_41367	none	blat.proc3829889.chain_616	1	STRG.4469.1,STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_614,blat.proc3829889.chain_617,blat.proc3829889.chain_618,blat.proc3829889.chain_619	8
scaffold_20	ends_in_intron	9499692	9499692	+	asmbl_26006,asmbl_26011	none	STRG.23474.1,blat.proc3829883.chain_528,blat.proc3829883.chain_529	3	STRG.23474.2,blat.proc3829883.chain_527,blat.proc3829883.chain_530	3
scaffold_18	starts_in_intron	1330146	1330146	+	asmbl_20364	none	Trinity_GG_11559_c0_g1_i4,blat.proc3829881.chain_1879	2	STRG.21011.1,STRG.21011.2,STRG.21011.3,blat.proc3829881.chain_1877,blat.proc3829881.chain_1878,blat.proc3829881.chain_1880	6
scaffold_10	alternate_exon	12966537	12966831	+	asmbl_4840	none	STRG.12883.3,Trinity_GG_7087_c2_g1_i1,blat.proc3829877.chain_1426	3	STRG.12883.2,blat.proc3829877.chain_1424	2
scaffold_13	alternate_exon	15509895	15512242	+	asmbl_11491	none	blat.proc3829879.chain_1334	1	STRG.16580.3	1
scaffold_19	starts_in_intron	7706754	7706754	+	asmbl_22294	none	Trinity_GG_12280_c0_g1_i2,blat.proc3829881.chain_3148	2	STRG.22243.2,blat.proc3829881.chain_3149	2
scaffold_11	starts_in_intron	17360598	17360598	+	asmbl_6201	none	STRG.14384.3	1	STRG.14384.2	1
scaffold_11	alternate_exon	11099221	11099266	-	asmbl_6997	none	STRG.14064.2	1	STRG.14064.1	1
scaffold_20	starts_in_intron	5839608	5839608	+	asmbl_25786	none	blat.proc3829883.chain_307	1	STRG.23168.1,blat.proc3829883.chain_306,blat.proc3829883.chain_308	3
scaffold_20	starts_in_intron	5906502	5906502	+	asmbl_25795	none	blat.proc3829883.chain_309	1	STRG.23181.1,blat.proc3829883.chain_310	2
scaffold_19	alternate_exon	12484718	12485842	-	asmbl_21712	none	STRG.22567.1,blat.proc3829897.chain_3286	2	blat.proc3829897.chain_3288	1
scaffold_9	spliced_intron	5844925	5845204	-	asmbl_55003	none	STRG.11140.1,blat.proc3829891.chain_3313	2	Trinity_GG_23202_c0_g1_i1,blat.proc3829891.chain_3312	2
scaffold_5	retained_intron	10195750	10195849	-	asmbl_45707	none	blat.proc3829889.chain_2394	1	STRG.6312.1,blat.proc3829889.chain_2386,blat.proc3829889.chain_2387,blat.proc3829889.chain_2388,blat.proc3829889.chain_2389,blat.proc3829889.chain_2391,blat.proc3829889.chain_2393	7
scaffold_27	alt_acceptor	3912132	3912133	-	asmbl_36886	none	STRG.28831.2	1	STRG.28831.1,blat.proc3829901.chain_2025	2
scaffold_6	spliced_intron	299110	299335	+	asmbl_46603	none	STRG.7082.1	1	STRG.7082.3,STRG.7082.4,Trinity_GG_3916_c0_g1_i2,Trinity_GG_3916_c0_g1_i3,blat.proc3829873.chain_3251,blat.proc3829873.chain_3252	6
scaffold_25	retained_intron	6302449	6302790	+	asmbl_33613,asmbl_33614	none	blat.proc3829885.chain_464,blat.proc3829885.chain_465	2	STRG.27516.1,blat.proc3829885.chain_469,blat.proc3829885.chain_470,blat.proc3829885.chain_471,blat.proc3829885.chain_472,blat.proc3829885.chain_473,blat.proc3829885.chain_474	7
scaffold_19	retained_intron	8331874	8332032	-	asmbl_21501	none	Trinity_GG_29384_c1_g1_i1,blat.proc3829897.chain_2941	2	STRG.22280.1	1
scaffold_6	retained_intron	10231662	10231807	+	asmbl_47211	none	STRG.7856.1,blat.proc3829875.chain_248	2	blat.proc3829875.chain_249	1
scaffold_12	alt_acceptor	12454200	12454201	-	asmbl_8016	none	STRG.15136.1,blat.proc3829893.chain_3526	2	blat.proc3829893.chain_3525	1
scaffold_12	retained_intron	7422321	7422854	-	asmbl_7716	none	blat.proc3829893.chain_3201	1	STRG.14807.2,blat.proc3829893.chain_3199	2
scaffold_26	alt_donor	6650926	6650927	-	asmbl_34964	none	STRG.28335.1,blat.proc3829901.chain_1512	2	STRG.28335.2,blat.proc3829901.chain_1511	2
scaffold_11	retained_exon	9652909	9652941	-	asmbl_6925,asmbl_6927	none	STRG.13972.1,blat.proc3829893.chain_2392,blat.proc3829893.chain_2393	3	STRG.13972.2	1
scaffold_25	alt_acceptor	4469548	4469549	-	asmbl_34175	none	STRG.27360.2	1	STRG.27360.1	1
scaffold_1	spliced_intron	14320593	14321243	+	asmbl_2358	none	STRG.1024.1,blat.proc3829871.chain_1129	2	blat.proc3829871.chain_1127	1
scaffold_22	alt_acceptor	4325484	4325485	-	asmbl_30013	none	STRG.24836.2,blat.proc3829899.chain_1998	2	STRG.24836.1,blat.proc3829899.chain_1997	2
scaffold_12	alt_acceptor	4352511	4352512	+	asmbl_8566	none	blat.proc3829877.chain_3076	1	STRG.14601.1,STRG.14601.2,blat.proc3829877.chain_3077	3
scaffold_16	alt_donor	14626801	14626802	+	asmbl_17496	none	STRG.19842.2	1	STRG.19842.1,Trinity_GG_10867_c0_g1_i1,Trinity_GG_10867_c0_g1_i2,blat.proc3829881.chain_684,blat.proc3829881.chain_685	5
scaffold_18	starts_in_intron	1392375	1392375	-	asmbl_19654	none	Trinity_GG_28799_c0_g1_i3,blat.proc3829897.chain_1936	2	STRG.21014.3,Trinity_GG_28799_c0_g1_i5,blat.proc3829897.chain_1931	3
scaffold_12	retained_intron	10186262	10186424	-	asmbl_7863,asmbl_7865	none	STRG.14979.3,blat.proc3829893.chain_3403	2	STRG.14979.1,STRG.14979.2,STRG.14979.4,STRG.14979.5,STRG.14979.6,blat.proc3829893.chain_3400,blat.proc3829893.chain_3401,blat.proc3829893.chain_3402,blat.proc3829893.chain_3404,blat.proc3829893.chain_3405	10
scaffold_19	retained_exon	12337822	12337857	+	asmbl_22593,asmbl_22596	none	STRG.22552.1,blat.proc3829881.chain_3501,blat.proc3829881.chain_3502	3	STRG.22552.2,blat.proc3829881.chain_3499,blat.proc3829881.chain_3500	3
scaffold_11	starts_in_intron	13034545	13034545	-	asmbl_7093	none	blat.proc3829893.chain_2574	1	STRG.14169.1,STRG.14169.2,STRG.14169.3,blat.proc3829893.chain_2575,blat.proc3829893.chain_2576,blat.proc3829893.chain_2577	6
scaffold_16	ends_in_intron	14526964	14526964	-	asmbl_16637	none	blat.proc3829897.chain_764	1	STRG.19817.1	1
scaffold_16	alternate_exon	7228891	7245757	-	asmbl_16346,asmbl_16355	none	STRG.19382.6,STRG.19382.7	2	STRG.19382.2	1
scaffold_11	spliced_intron	9680424	9680534	-	asmbl_6930	none	STRG.13973.1,blat.proc3829893.chain_2399	2	STRG.13973.2,blat.proc3829893.chain_2400	2
scaffold_8	alternate_exon	9868129	9868366	+	asmbl_52110	none	blat.proc3829875.chain_2696	1	blat.proc3829875.chain_2698	1
scaffold_6	spliced_intron	4519219	4519479	-	asmbl_48273	none	STRG.7425.1,blat.proc3829889.chain_3453	2	Trinity_GG_21196_c0_g1_i1,blat.proc3829889.chain_3452	2
scaffold_19	spliced_intron	5155289	5155678	+	asmbl_22156,asmbl_22158	none	STRG.22072.1,STRG.22072.3,blat.proc3829881.chain_3013,blat.proc3829881.chain_3014	4	STRG.22072.2,blat.proc3829881.chain_3012	2
scaffold_5	alt_acceptor	13245879	13245880	+	asmbl_44545	none	STRG.6561.3	1	STRG.6561.1,STRG.6561.2,blat.proc3829873.chain_2703,blat.proc3829873.chain_2704,blat.proc3829873.chain_2706	5
scaffold_10	spliced_intron	7685649	7686027	+	asmbl_4577	none	STRG.12548.2,blat.proc3829877.chain_1167	2	STRG.12548.4,blat.proc3829877.chain_1168,blat.proc3829877.chain_1171	3
scaffold_17	ends_in_intron	6881009	6881009	-	asmbl_19043	none	blat.proc3829897.chain_1292	1	STRG.20336.1,blat.proc3829897.chain_1293	2
scaffold_13	ends_in_intron	9251164	9251164	+	asmbl_11172	none	blat.proc3829879.chain_850	1	STRG.16172.1,Trinity_GG_8857_c1_g1_i3,Trinity_GG_8857_c1_g1_i4,blat.proc3829879.chain_847,blat.proc3829879.chain_848	5
scaffold_16	skipped_exon	14485512	14487936	+	asmbl_17483,asmbl_17485	none	STRG.19814.1,blat.proc3829881.chain_700,blat.proc3829881.chain_701	3	STRG.19814.2	1
scaffold_6	alt_acceptor	1350429	1350430	-	asmbl_48045	none	STRG.7176.3	1	STRG.7176.1,STRG.7176.2,blat.proc3829889.chain_3156,blat.proc3829889.chain_3158	4
scaffold_17	alt_donor	682846	682847	-	asmbl_18684	none	STRG.19908.3,blat.proc3829897.chain_873	2	STRG.19908.2	1
scaffold_7	alternate_exon	11834502	11834592	-	asmbl_49979	none	STRG.9281.1,Trinity_GG_22250_c1_g1_i2,blat.proc3829891.chain_1525	3	STRG.9281.2	1
scaffold_5	alt_donor	4596061	4596062	+	asmbl_43940	none	blat.proc3829873.chain_2044	1	STRG.5904.1,STRG.5904.2,blat.proc3829873.chain_2040,blat.proc3829873.chain_2043	4
scaffold_4	starts_in_intron	6946100	6946100	+	asmbl_42771	none	STRG.4536.3	1	STRG.4536.1,STRG.4536.2,blat.proc3829873.chain_899,blat.proc3829873.chain_901,blat.proc3829873.chain_903,blat.proc3829873.chain_905	6
scaffold_1	spliced_intron	12338031	12338333	-	asmbl_710,asmbl_713,asmbl_714,asmbl_717,asmbl_720,asmbl_721,asmbl_722,asmbl_723	none	STRG.843.1,STRG.843.2,blat.proc3829887.chain_736,blat.proc3829887.chain_738,blat.proc3829887.chain_739,blat.proc3829887.chain_741,blat.proc3829887.chain_742,blat.proc3829887.chain_745,blat.proc3829887.chain_746	9	blat.proc3829887.chain_734,blat.proc3829887.chain_735,blat.proc3829887.chain_737,blat.proc3829887.chain_743	4
scaffold_13	alternate_exon	11377478	11378589	-	asmbl_10046	none	STRG.16287.6,Trinity_GG_26140_c0_g1_i2,blat.proc3829895.chain_1027	3	STRG.16287.7	1
scaffold_21	starts_in_intron	10942113	10942113	+	asmbl_28906	none	Trinity_GG_13573_c1_g1_i3,blat.proc3829883.chain_1616	2	STRG.24555.1,blat.proc3829883.chain_1614	2
scaffold_4	alternate_exon	10915976	10916142	+	asmbl_43016	none	STRG.4812.2,blat.proc3829873.chain_1183	2	STRG.4812.1,blat.proc3829873.chain_1184	2
scaffold_9	retained_intron	11835838	11835897	+	asmbl_54369	none	STRG.11488.1,Trinity_GG_6421_c0_g1_i1,blat.proc3829877.chain_283	3	STRG.11488.2	1
scaffold_9	starts_in_intron	16744771	16744771	+	asmbl_54598	none	Trinity_GG_6593_c0_g1_i1,blat.proc3829877.chain_567	2	STRG.11812.1,Trinity_GG_6593_c0_g1_i2,blat.proc3829877.chain_568	3
scaffold_16	alt_donor	9204486	9204487	-	asmbl_16450	none	blat.proc3829897.chain_489	1	STRG.19508.1,blat.proc3829897.chain_490	2
scaffold_12	retained_intron	6943917	6944472	-	asmbl_7679	none	Trinity_GG_25238_c0_g1_i1,Trinity_GG_25240_c0_g1_i2,blat.proc3829893.chain_3140,blat.proc3829893.chain_3143	4	STRG.14749.1,blat.proc3829893.chain_3139,blat.proc3829893.chain_3142	3
scaffold_4	retained_intron	3528251	3528471	-	asmbl_41192	none	STRG.4277.1	1	STRG.4277.5	1
scaffold_19	alt_donor	11566006	11566007	-	asmbl_21636	none	STRG.22480.1,blat.proc3829897.chain_3197	2	STRG.22480.2	1
scaffold_28	retained_exon	6547487	6548040	-	asmbl_37678	none	STRG.29730.2	1	STRG.29730.4	1
scaffold_11	retained_intron	8080714	8080789	+	asmbl_5680	none	Trinity_GG_7572_c0_g1_i4,blat.proc3829877.chain_2233	2	STRG.13803.1,STRG.13803.2,Trinity_GG_7572_c0_g1_i1,Trinity_GG_7572_c0_g1_i2,Trinity_GG_7572_c0_g1_i3,blat.proc3829877.chain_2231,blat.proc3829877.chain_2232,blat.proc3829877.chain_2234	8
scaffold_10	retained_intron	3062983	3063389	-	asmbl_3067	none	STRG.12117.1,Trinity_GG_23774_c0_g1_i2,blat.proc3829893.chain_588	3	STRG.12117.2,blat.proc3829893.chain_587	2
scaffold_6	alternate_exon	3544650	3544691	+	asmbl_46794	none	STRG.7357.2,Trinity_GG_4040_c0_g1_i2,blat.proc3829873.chain_3493	3	STRG.7357.1,Trinity_GG_4040_c0_g1_i1,blat.proc3829873.chain_3494	3
scaffold_1	alternate_exon	849738	850698	+	asmbl_1418	none	STRG.41.4	1	STRG.41.1,Trinity_GG_29_c0_g1_i2,blat.proc3829871.chain_52	3
scaffold_21	alternate_exon	7724601	7728282	+	asmbl_28779,asmbl_28780	none	STRG.24301.1,STRG.24301.2,blat.proc3829883.chain_1449	3	STRG.24301.4	1
scaffold_19	spliced_intron	12819130	12819507	-	asmbl_21759,asmbl_21760,asmbl_21764,asmbl_21765	none	STRG.22593.1,Trinity_GG_29568_c0_g1_i15,blat.proc3829897.chain_3275,blat.proc3829897.chain_3276,blat.proc3829897.chain_3280	5	STRG.22593.2,STRG.22593.3,Trinity_GG_29568_c0_g1_i16,blat.proc3829897.chain_3277,blat.proc3829897.chain_3279,blat.proc3829897.chain_3281	6
scaffold_15	spliced_intron	4497290	4497450	+	asmbl_14090	none	STRG.18164.1,blat.proc3829879.chain_2738	2	blat.proc3829879.chain_2736	1
scaffold_9	alt_acceptor	16569994	16569995	+	asmbl_54572,asmbl_54575,asmbl_54576,asmbl_54577,asmbl_54579,asmbl_54580	none	STRG.11798.1,STRG.11798.2,Trinity_GG_6586_c0_g1_i10,Trinity_GG_6586_c0_g1_i15,Trinity_GG_6586_c0_g1_i5,Trinity_GG_6586_c0_g1_i6,blat.proc3829877.chain_551,blat.proc3829877.chain_553,blat.proc3829877.chain_555,blat.proc3829877.chain_556,blat.proc3829877.chain_557	11	Trinity_GG_6586_c0_g1_i14,Trinity_GG_6586_c0_g1_i23,blat.proc3829877.chain_552,blat.proc3829877.chain_558	4
scaffold_17	spliced_intron	6975317	6976246	-	asmbl_19053	none	STRG.20347.1,blat.proc3829897.chain_1270	2	STRG.20347.2,blat.proc3829897.chain_1268	2
scaffold_6	retained_exon	18048348	18048443	-	asmbl_49162	none	STRG.8479.2,blat.proc3829891.chain_774	2	STRG.8479.1,blat.proc3829891.chain_773	2
scaffold_14	retained_intron	14545904	14546225	-	asmbl_13677	none	STRG.17704.1,Trinity_GG_26969_c1_g1_i1,blat.proc3829895.chain_2449	3	Trinity_GG_26969_c2_g1_i1,blat.proc3829895.chain_2450	2
scaffold_24	retained_intron	8747030	8747465	+	asmbl_32447	none	STRG.26872.2,Trinity_GG_14810_c1_g1_i1,blat.proc3829883.chain_3683	3	STRG.26872.1,Trinity_GG_14810_c0_g1_i2,blat.proc3829883.chain_3681	3
scaffold_26	starts_in_intron	10122710	10122710	-	asmbl_35087	none	Trinity_GG_32936_c0_g1_i9,blat.proc3829901.chain_1631	2	STRG.28511.1,STRG.28511.2,Trinity_GG_32936_c0_g1_i11,Trinity_GG_32936_c0_g1_i13,Trinity_GG_32936_c0_g1_i3,Trinity_GG_32936_c0_g1_i5,blat.proc3829901.chain_1633,blat.proc3829901.chain_1634,blat.proc3829901.chain_1635,blat.proc3829901.chain_1636	10
scaffold_14	skipped_exon	7295227	7295668	+	asmbl_12124,asmbl_12127	none	STRG.17153.1,blat.proc3829879.chain_1852,blat.proc3829879.chain_1855	3	STRG.17153.2,blat.proc3829879.chain_1853	2
scaffold_3	retained_intron	13175895	13175983	+	asmbl_40391	none	blat.proc3829873.chain_77	1	STRG.3679.1,STRG.3679.2,STRG.3679.3,blat.proc3829873.chain_76,blat.proc3829873.chain_78,blat.proc3829873.chain_79	6
scaffold_2	spliced_intron	7781346	7781544	+	asmbl_24612	none	blat.proc3829871.chain_2207	1	STRG.2076.3,STRG.2076.5,STRG.2076.6,blat.proc3829871.chain_2209	4
scaffold_9	retained_intron	13319452	13319594	-	asmbl_55400	none	STRG.11624.1	1	STRG.11624.2	1
scaffold_28	skipped_exon	7228838	7230748	+	asmbl_38336	none	STRG.29765.2	1	STRG.29765.1,blat.proc3829885.chain_2860	2
scaffold_5	skipped_exon	15468641	15469211	+	asmbl_44658	none	STRG.6725.2	1	STRG.6725.1	1
scaffold_13	retained_intron	3735854	3736052	+	asmbl_10718	none	blat.proc3829879.chain_391	1	STRG.15686.1,STRG.15686.2,STRG.15686.3,Trinity_GG_8631_c0_g1_i4,Trinity_GG_8631_c0_g1_i6,Trinity_GG_8631_c0_g1_i8,blat.proc3829879.chain_389,blat.proc3829879.chain_390,blat.proc3829879.chain_393,blat.proc3829879.chain_394,blat.proc3829879.chain_395,blat.proc3829879.chain_396	12
scaffold_23	alternate_exon	5620237	5620444	-	asmbl_31650	none	STRG.25917.4	1	STRG.25917.1	1
scaffold_23	alternate_exon	7658152	7664410	+	asmbl_31001	none	blat.proc3829883.chain_2932	1	blat.proc3829883.chain_2934	1
scaffold_2074	alt_donor	935	936	-	asmbl_27280	none	STRG.30677.1	1	STRG.30677.2	1
scaffold_6	alternate_exon	17709796	17709869	+	asmbl_47718	none	STRG.8452.2	1	STRG.8452.1,Trinity_GG_4630_c0_g1_i1,blat.proc3829875.chain_808	3
scaffold_1	retained_intron	7290185	7290684	+	asmbl_1890,asmbl_1893	none	STRG.526.1,STRG.526.4,Trinity_GG_300_c0_g1_i1,blat.proc3829871.chain_531	4	STRG.526.3	1
scaffold_15	retained_intron	4983626	4984030	-	asmbl_15190,asmbl_15191,asmbl_15192	none	STRG.18197.5,blat.proc3829895.chain_2987,blat.proc3829895.chain_2988	3	STRG.18197.4	1
scaffold_20	alt_acceptor	11672198	11672199	-	asmbl_27098,asmbl_27101,asmbl_27103	none	STRG.23656.1,STRG.23656.3,blat.proc3829899.chain_650,blat.proc3829899.chain_651,blat.proc3829899.chain_652	5	STRG.23656.2,STRG.23656.4,blat.proc3829899.chain_653,blat.proc3829899.chain_654	4
scaffold_20	alternate_exon	11479243	11480460	+	asmbl_26214	none	STRG.23639.4	1	STRG.23639.5,Trinity_GG_13053_c0_g2_i1,blat.proc3829883.chain_718	3
scaffold_27	alt_donor	290478	290479	-	asmbl_36609	none	STRG.28536.1,blat.proc3829901.chain_1712	2	STRG.28536.2,blat.proc3829901.chain_1714	2
scaffold_12	alternate_exon	12836654	12838118	-	asmbl_8024,asmbl_8025	none	STRG.15163.1,STRG.15163.2,blat.proc3829893.chain_3561,blat.proc3829893.chain_3562	4	STRG.15163.3	1
scaffold_17	starts_in_intron	7851888	7851888	-	asmbl_19101	none	blat.proc3829897.chain_1371	1	STRG.20400.1,blat.proc3829897.chain_1372	2
scaffold_23	retained_intron	8125986	8126005	-	asmbl_31793	none	Trinity_GG_31605_c0_g1_i1	1	STRG.26105.1	1
scaffold_5	alt_donor	8579152	8579153	+	asmbl_44217	none	STRG.6183.1,Trinity_GG_3378_c0_g1_i1,blat.proc3829873.chain_2330	3	STRG.6183.2	1
scaffold_12	ends_in_intron	4786751	4786751	-	asmbl_7580,asmbl_7584	none	STRG.14646.6,blat.proc3829893.chain_3020	2	STRG.14646.3,STRG.14646.4,blat.proc3829893.chain_3019,blat.proc3829893.chain_3025	4
scaffold_3	alternate_exon	5006281	5009562	+	asmbl_40017,asmbl_40019	none	STRG.3199.1,STRG.3199.2	2	STRG.3199.3,Trinity_GG_1799_c0_g2_i2	2
scaffold_11	alt_donor	7050614	7050615	+	asmbl_5613,asmbl_5614,asmbl_5615	none	STRG.13722.1,STRG.13722.3,Trinity_GG_7553_c0_g1_i3,Trinity_GG_7553_c0_g1_i8,blat.proc3829877.chain_2193,blat.proc3829877.chain_2196	6	STRG.13722.2,Trinity_GG_7553_c0_g1_i2,blat.proc3829877.chain_2198	3
scaffold_7	retained_intron	3953206	3953955	-	asmbl_49650	none	blat.proc3829891.chain_1093	1	STRG.8791.1,STRG.8791.2,blat.proc3829891.chain_1086,blat.proc3829891.chain_1087,blat.proc3829891.chain_1088,blat.proc3829891.chain_1089,blat.proc3829891.chain_1090,blat.proc3829891.chain_1091,blat.proc3829891.chain_1092	9
scaffold_18	retained_intron	1944645	1944740	-	asmbl_19712	none	STRG.21071.2,blat.proc3829897.chain_1962	2	STRG.21071.1,blat.proc3829897.chain_1963	2
scaffold_15	retained_intron	14323219	14323986	-	asmbl_15729,asmbl_15736	none	STRG.18855.3,Trinity_GG_27599_c0_g1_i11	2	Trinity_GG_27599_c0_g1_i1,blat.proc3829895.chain_3605	2
scaffold_2	retained_exon	5707054	5707146	-	asmbl_23184	none	blat.proc3829887.chain_1853	1	STRG.1957.1,STRG.1957.2,blat.proc3829887.chain_1851,blat.proc3829887.chain_1852	4
scaffold_19	alternate_exon	1738694	1738743	-	asmbl_21251	none	STRG.21921.2	1	STRG.21921.1	1
scaffold_19	retained_intron	6669350	6669598	+	asmbl_22228,asmbl_22231	none	STRG.22169.1,STRG.22169.2,blat.proc3829881.chain_3026	3	STRG.22169.3,blat.proc3829881.chain_3027	2
scaffold_19	alternate_exon	2780296	2780543	+	asmbl_22076,asmbl_22077,asmbl_22078	none	STRG.21950.1,STRG.21950.2,STRG.21950.3,Trinity_GG_12146_c1_g1_i1,blat.proc3829881.chain_2914	5	STRG.21950.4,STRG.21950.5	2
scaffold_28	ends_in_intron	1018046	1018046	+	asmbl_37993	none	blat.proc3829885.chain_2415	1	STRG.29302.1,blat.proc3829885.chain_2414	2
scaffold_6	retained_intron	16876680	16877084	-	asmbl_49106	none	STRG.8397.1,blat.proc3829891.chain_721	2	STRG.8397.3,blat.proc3829891.chain_723	2
scaffold_13	alt_donor	16460349	16460350	-	asmbl_10273,asmbl_10276	none	STRG.16689.1,STRG.16689.3,Trinity_GG_26334_c0_g1_i2,blat.proc3829895.chain_1355,blat.proc3829895.chain_1357	5	STRG.16689.4,STRG.16689.5,Trinity_GG_26334_c0_g1_i3,blat.proc3829895.chain_1353	4
scaffold_4	ends_in_intron	1970835	1970835	+	asmbl_42476	none	blat.proc3829873.chain_573	1	STRG.4210.1,STRG.4210.2,blat.proc3829873.chain_571,blat.proc3829873.chain_572	4
scaffold_15	alt_acceptor	15450390	15450391	+	asmbl_14740	none	Trinity_GG_10389_c0_g1_i4,blat.proc3829879.chain_3566	2	STRG.18933.1,STRG.18933.2,Trinity_GG_10389_c0_g1_i6,Trinity_GG_10389_c0_g1_i7,blat.proc3829879.chain_3563,blat.proc3829879.chain_3564,blat.proc3829879.chain_3565	7
scaffold_9	alt_acceptor	3411471	3411472	-	asmbl_54866,asmbl_54867,asmbl_54870	none	STRG.10946.3,blat.proc3829891.chain_3122,blat.proc3829891.chain_3124	3	STRG.10946.1,blat.proc3829891.chain_3121	2
scaffold_11	alt_donor	7049051	7049052	+	asmbl_5610,asmbl_5611,asmbl_5613,asmbl_5614,asmbl_5615	none	STRG.13722.1,STRG.13722.3,Trinity_GG_7553_c0_g1_i3,Trinity_GG_7553_c0_g1_i5,Trinity_GG_7553_c0_g1_i7,Trinity_GG_7553_c0_g1_i8,blat.proc3829877.chain_2193,blat.proc3829877.chain_2194,blat.proc3829877.chain_2195,blat.proc3829877.chain_2196	10	Trinity_GG_7553_c0_g1_i1,blat.proc3829877.chain_2197	2
scaffold_5	alt_acceptor	3102953	3102954	+	asmbl_43876	none	STRG.5799.2,blat.proc3829873.chain_1977	2	STRG.5799.1,blat.proc3829873.chain_1978	2
scaffold_3	ends_in_intron	2836928	2836928	+	asmbl_39875	none	Trinity_GG_1709_c0_g1_i1,blat.proc3829871.chain_3193	2	STRG.3041.1,blat.proc3829871.chain_3191,blat.proc3829871.chain_3192	3
scaffold_18	skipped_exon	4463410	4465472	+	asmbl_20551,asmbl_20552	none	STRG.21230.1,blat.proc3829881.chain_2122,blat.proc3829881.chain_2123	3	STRG.21230.2,blat.proc3829881.chain_2121	2
scaffold_10	skipped_exon	5856417	5857533	-	asmbl_3319	none	blat.proc3829893.chain_873	1	STRG.12401.1,STRG.12401.2,STRG.12401.3,blat.proc3829893.chain_872	4
scaffold_2	retained_intron	7469156	7469515	-	asmbl_23285,asmbl_23288,asmbl_23289	none	STRG.2075.2,blat.proc3829887.chain_1892,blat.proc3829887.chain_1898	3	Trinity_GG_18127_c0_g1_i23,blat.proc3829887.chain_1889	2
scaffold_13	alternate_exon	5575915	5576162	-	asmbl_9657,asmbl_9659	none	STRG.15843.2,STRG.15843.3,blat.proc3829895.chain_584	3	STRG.15843.1,blat.proc3829895.chain_586	2
scaffold_4	alternate_exon	104049	105015	-	asmbl_41043	none	STRG.4109.1,blat.proc3829889.chain_228	2	Trinity_GG_19304_c1_g1_i4,blat.proc3829889.chain_226	2
scaffold_6	spliced_intron	17524201	17525243	+	asmbl_47701	none	STRG.8451.4,blat.proc3829875.chain_843	2	STRG.8451.1,STRG.8451.2,STRG.8451.3,Trinity_GG_4648_c0_g1_i1,Trinity_GG_4648_c1_g1_i4,blat.proc3829875.chain_841	6
scaffold_5	alt_acceptor	8411348	8411349	+	asmbl_44212	none	STRG.6180.2	1	STRG.6180.1,STRG.6180.3,blat.proc3829873.chain_2248,blat.proc3829873.chain_2249	4
scaffold_21	starts_in_intron	6923099	6923099	-	asmbl_27778,asmbl_27780	none	STRG.24206.2,blat.proc3829899.chain_1247	2	STRG.24206.1,blat.proc3829899.chain_1248	2
scaffold_23	alt_acceptor	4163077	4163078	-	asmbl_31561	none	STRG.25815.1,blat.proc3829899.chain_2931	2	STRG.25815.2,blat.proc3829899.chain_2930	2
scaffold_14	alternate_exon	9586665	9586697	+	asmbl_12272	none	blat.proc3829879.chain_2065	1	STRG.17331.1,blat.proc3829879.chain_2066	2
scaffold_25	alt_acceptor	430341	430342	-	asmbl_33977	none	STRG.27065.2,blat.proc3829901.chain_317	2	STRG.27065.1,blat.proc3829901.chain_316	2
scaffold_18	alt_acceptor	1997986	1997987	-	asmbl_19721	none	STRG.21097.1,blat.proc3829897.chain_1980	2	STRG.21097.2	1
scaffold_4	retained_intron	5648812	5649001	-	asmbl_41353,asmbl_41355,asmbl_41371	none	STRG.4469.1,Trinity_GG_19533_c1_g1_i2,blat.proc3829889.chain_615,blat.proc3829889.chain_617,blat.proc3829889.chain_618	5	STRG.4469.2,STRG.4469.3,blat.proc3829889.chain_614	3
scaffold_10	starts_in_intron	1629344	1629344	-	asmbl_2986	none	blat.proc3829893.chain_458	1	STRG.12019.1,STRG.12019.2,blat.proc3829893.chain_456,blat.proc3829893.chain_459	4
scaffold_19	alternate_exon	13215481	13215874	-	asmbl_21833	none	Trinity_GG_29598_c1_g1_i2,blat.proc3829897.chain_3365	2	STRG.22682.1,blat.proc3829897.chain_3360,blat.proc3829897.chain_3361,blat.proc3829897.chain_3362,blat.proc3829897.chain_3363,blat.proc3829897.chain_3364,blat.proc3829897.chain_3368,blat.proc3829897.chain_3370	8
scaffold_2	starts_in_intron	8776674	8776674	-	asmbl_23353	none	Trinity_GG_18168_c0_g1_i1,blat.proc3829887.chain_1968	2	STRG.2134.1,Trinity_GG_18168_c0_g1_i3,blat.proc3829887.chain_1970	3
scaffold_25	alt_acceptor	8484355	8484356	-	asmbl_34421	none	STRG.27663.2	1	STRG.27663.1,blat.proc3829901.chain_915	2
scaffold_1	retained_exon	22134525	22135231	+	asmbl_2673	none	STRG.1479.1	1	STRG.1479.3	1
scaffold_14	retained_exon	14147748	14147811	+	asmbl_12511,asmbl_12515	none	STRG.17676.3,STRG.17676.5	2	STRG.17676.1	1
scaffold_21	retained_intron	3175043	3175199	+	asmbl_28490	none	blat.proc3829883.chain_1059	1	STRG.23945.1,STRG.23945.2,STRG.23945.3,STRG.23945.6,blat.proc3829883.chain_1058,blat.proc3829883.chain_1060	6
scaffold_14	retained_intron	12753400	12753507	-	asmbl_13584	none	blat.proc3829895.chain_2352	1	STRG.17572.1,STRG.17572.2,STRG.17572.3,blat.proc3829895.chain_2350,blat.proc3829895.chain_2351,blat.proc3829895.chain_2354	6
scaffold_17	retained_intron	8210415	8210511	-	asmbl_19126	none	blat.proc3829897.chain_1410	1	STRG.20431.2,blat.proc3829897.chain_1409	2
scaffold_20	alt_acceptor	2074902	2074903	+	asmbl_25622	none	STRG.22928.2	1	STRG.22928.1,blat.proc3829883.chain_75	2
scaffold_14	starts_in_intron	6291951	6291951	+	asmbl_12047	none	blat.proc3829879.chain_1812	1	STRG.17067.1,Trinity_GG_9404_c0_g1_i4,blat.proc3829879.chain_1813,blat.proc3829879.chain_1814	4
scaffold_12	retained_exon	8825193	8825578	+	asmbl_8792,asmbl_8795,asmbl_8796	none	STRG.14875.1,Trinity_GG_8235_c0_g1_i1,Trinity_GG_8235_c0_g1_i2,Trinity_GG_8235_c0_g1_i6,blat.proc3829877.chain_3396,blat.proc3829877.chain_3397,blat.proc3829877.chain_3399	7	Trinity_GG_8235_c0_g1_i4,blat.proc3829877.chain_3400	2
scaffold_1	alt_donor	4027754	4027755	-	asmbl_180	none	STRG.243.2,blat.proc3829887.chain_110	2	STRG.243.1,blat.proc3829887.chain_109	2
scaffold_1	skipped_exon	18086651	18087485	-	asmbl_1087	none	STRG.1269.2	1	STRG.1269.1,blat.proc3829887.chain_1164,blat.proc3829887.chain_1165	3
scaffold_20	alt_acceptor	10986913	10986914	+	asmbl_26159	none	Trinity_GG_13068_c0_g1_i4,blat.proc3829883.chain_750	2	STRG.23608.3	1
scaffold_21	alt_donor	755516	755517	+	asmbl_28325	none	STRG.23758.2	1	STRG.23758.1,Trinity_GG_13120_c0_g1_i2,blat.proc3829883.chain_837,blat.proc3829883.chain_838	4
scaffold_20	ends_in_intron	3908990	3908990	+	asmbl_25698	none	blat.proc3829883.chain_166,blat.proc3829883.chain_169	2	blat.proc3829883.chain_168,blat.proc3829883.chain_170	2
scaffold_27	starts_in_intron	383179	383179	-	asmbl_36633,asmbl_36634,asmbl_36637	none	STRG.28547.1,STRG.28547.3,STRG.28547.5,Trinity_GG_32953_c1_g1_i2,blat.proc3829901.chain_1683,blat.proc3829901.chain_1684	6	STRG.28547.2,STRG.28547.4,blat.proc3829901.chain_1685,blat.proc3829901.chain_1686	4
scaffold_3	starts_in_intron	8309718	8309718	-	asmbl_38988	none	blat.proc3829887.chain_3104	1	STRG.3401.1,blat.proc3829887.chain_3103	2
scaffold_2	starts_in_intron	10688220	10688220	+	asmbl_24757	none	Trinity_GG_1265_c0_g1_i2,blat.proc3829871.chain_2351	2	STRG.2235.1,STRG.2235.3,Trinity_GG_1265_c0_g1_i1,Trinity_GG_1265_c0_g1_i3,blat.proc3829871.chain_2350,blat.proc3829871.chain_2352	6
scaffold_14	retained_intron	9273608	9273885	-	asmbl_13347,asmbl_13349	none	blat.proc3829895.chain_1994,blat.proc3829895.chain_1998	2	STRG.17323.2	1
scaffold_20	ends_in_intron	5950764	5950764	-	asmbl_26727	none	blat.proc3829899.chain_162	1	STRG.23191.1,blat.proc3829899.chain_160,blat.proc3829899.chain_161	3
scaffold_1	spliced_intron	4602131	4602216	+	asmbl_1676	none	STRG.282.1,blat.proc3829871.chain_244	2	Trinity_GG_136_c0_g1_i1,blat.proc3829871.chain_243	2
scaffold_28	alternate_exon	2267628	2267846	-	asmbl_37353	none	blat.proc3829901.chain_2471	1	STRG.29380.1,STRG.29380.3,Trinity_GG_33458_c0_g1_i4,blat.proc3829901.chain_2467,blat.proc3829901.chain_2468,blat.proc3829901.chain_2469	6
scaffold_12	alt_acceptor	4756820	4756821	-	asmbl_7574,asmbl_7576	none	STRG.14641.2,STRG.14641.4,blat.proc3829893.chain_2975	3	STRG.14641.1,STRG.14641.3,blat.proc3829893.chain_2976	3
scaffold_18	alt_donor	6906405	6906406	+	asmbl_20723	none	STRG.21386.2	1	STRG.21386.1,Trinity_GG_11811_c0_g1_i2,blat.proc3829881.chain_2354	3
scaffold_12	ends_in_intron	3331311	3331311	+	asmbl_8509	none	Trinity_GG_8041_c1_g1_i1	1	STRG.14546.1,STRG.14546.3,blat.proc3829877.chain_3049	3
scaffold_22	spliced_intron	1008363	1008659	+	asmbl_29208,asmbl_29210,asmbl_29212	none	STRG.24742.2,blat.proc3829883.chain_1807,blat.proc3829883.chain_1808,blat.proc3829883.chain_1809	4	STRG.24742.4,blat.proc3829883.chain_1810	2
scaffold_6	spliced_intron	4832299	4832373	-	asmbl_48304	none	STRG.7455.1,blat.proc3829889.chain_3518	2	blat.proc3829889.chain_3519	1
scaffold_7	alt_donor	4177686	4177687	+	asmbl_50603,asmbl_50604	none	STRG.8807.2,STRG.8807.3	2	STRG.8807.1,blat.proc3829875.chain_1170,blat.proc3829875.chain_1171	3
scaffold_8	skipped_exon	12690007	12691737	+	asmbl_52317,asmbl_52319,asmbl_52320	none	STRG.10436.1,blat.proc3829875.chain_2945,blat.proc3829875.chain_2949	3	STRG.10436.2,blat.proc3829875.chain_2946	2
scaffold_4	alt_acceptor	17162550	17162551	+	asmbl_43383	none	STRG.5317.2	1	STRG.5317.1	1
scaffold_27	alt_acceptor	2822746	2822747	-	asmbl_36814	none	blat.proc3829901.chain_1862	1	STRG.28744.1,blat.proc3829901.chain_1859,blat.proc3829901.chain_1860,blat.proc3829901.chain_1861	4
scaffold_25	ends_in_intron	1899701	1899701	-	asmbl_34038	none	Trinity_GG_32246_c0_g2_i1,blat.proc3829901.chain_522	2	STRG.27181.1,blat.proc3829901.chain_521	2
scaffold_24	starts_in_intron	10483539	10483539	+	asmbl_32566	none	Trinity_GG_14912_c0_g1_i1,blat.proc3829885.chain_113	2	STRG.26999.2,STRG.26999.4,blat.proc3829885.chain_112	3
scaffold_18	alt_acceptor	4615525	4615526	+	asmbl_20567	none	STRG.21243.3	1	STRG.21243.2,blat.proc3829881.chain_2082,blat.proc3829881.chain_2083	3
scaffold_11	ends_in_intron	16460283	16460283	+	asmbl_6132	none	blat.proc3829877.chain_2723	1	STRG.14327.1	1
scaffold_21	starts_in_intron	10283543	10283543	-	asmbl_28049	none	blat.proc3829899.chain_1601	1	STRG.24477.1,blat.proc3829899.chain_1602	2
scaffold_5	starts_in_intron	4689995	4689995	-	asmbl_45374	none	blat.proc3829889.chain_2031	1	blat.proc3829889.chain_2027,blat.proc3829889.chain_2030,blat.proc3829889.chain_2034	3
scaffold_10	spliced_intron	716590	716853	-	asmbl_2904,asmbl_2909	none	STRG.11948.1,Trinity_GG_23680_c0_g1_i7,blat.proc3829893.chain_434,blat.proc3829893.chain_438	4	STRG.11948.2,Trinity_GG_23680_c0_g1_i4,Trinity_GG_23680_c0_g1_i6,blat.proc3829893.chain_435,blat.proc3829893.chain_436	5
scaffold_19	spliced_intron	12432771	12432955	+	asmbl_22603,asmbl_22608,asmbl_22611	none	STRG.22558.1,blat.proc3829881.chain_3516,blat.proc3829881.chain_3517,blat.proc3829881.chain_3520	4	blat.proc3829881.chain_3515,blat.proc3829881.chain_3518,blat.proc3829881.chain_3519	3
scaffold_2	starts_in_intron	10168722	10168722	-	asmbl_23422	none	Trinity_GG_18253_c1_g1_i3,blat.proc3829887.chain_2122	2	STRG.2206.2,STRG.2206.3,Trinity_GG_18253_c1_g1_i5,blat.proc3829887.chain_2121	4
scaffold_8	alt_acceptor	3102132	3102133	-	asmbl_52724	none	STRG.9818.2	1	STRG.9818.1,blat.proc3829891.chain_2001,blat.proc3829891.chain_2003	3
scaffold_7	spliced_intron	15595021	15595243	+	asmbl_51328	none	STRG.9548.2,Trinity_GG_5298_c0_g1_i1,blat.proc3829875.chain_1999	3	STRG.9548.1,blat.proc3829875.chain_2000	2
scaffold_13	ends_in_intron	6383285	6383285	-	asmbl_9743	none	Trinity_GG_25973_c1_g1_i2,blat.proc3829895.chain_701	2	STRG.15913.1,Trinity_GG_25973_c1_g1_i1,blat.proc3829895.chain_700,blat.proc3829895.chain_702	4
scaffold_14	alt_donor	14248531	14248532	+	asmbl_12518	none	STRG.17670.1	1	STRG.17670.2	1
scaffold_25	alt_donor	1232085	1232086	+	asmbl_33358	none	STRG.27151.2,blat.proc3829885.chain_235	2	STRG.27151.1,blat.proc3829885.chain_236	2
scaffold_27	ends_in_intron	3020545	3020545	+	asmbl_36135	none	blat.proc3829885.chain_1774	1	STRG.28769.1,STRG.28769.2,blat.proc3829885.chain_1779,blat.proc3829885.chain_1780,blat.proc3829885.chain_1782	5
scaffold_11	starts_in_intron	9124048	9124048	+	asmbl_5832	none	blat.proc3829877.chain_2420	1	STRG.13941.1,STRG.13941.2,blat.proc3829877.chain_2417,blat.proc3829877.chain_2418,blat.proc3829877.chain_2419	5
scaffold_1	alt_acceptor	6817840	6817841	-	asmbl_389	none	blat.proc3829887.chain_383	1	STRG.476.1	1
scaffold_6	alt_donor	7171935	7171936	+	asmbl_46989,asmbl_46990,asmbl_46991,asmbl_46992	none	STRG.7621.1,STRG.7621.2,STRG.7621.3,STRG.7621.4	4	blat.proc3829873.chain_3739	1
scaffold_3	skipped_exon	19802510	19803682	+	asmbl_40730,asmbl_40731	none	STRG.4094.2,STRG.4094.3	2	STRG.4094.1,blat.proc3829873.chain_434	2
scaffold_3	skipped_exon	2667897	2668742	+	asmbl_39867,asmbl_39868	none	STRG.3038.2,STRG.3038.3	2	STRG.3038.1,STRG.3038.4	2
scaffold_16	starts_in_intron	10107194	10107194	+	asmbl_17320	none	Trinity_GG_10744_c1_g1_i2,blat.proc3829881.chain_483	2	STRG.19581.1,STRG.19581.2,blat.proc3829881.chain_482	3
scaffold_12	spliced_intron	6943917	6944472	-	asmbl_7680,asmbl_7681	none	STRG.14749.1,blat.proc3829893.chain_3139,blat.proc3829893.chain_3142	3	Trinity_GG_25238_c0_g1_i1,Trinity_GG_25240_c0_g1_i2,blat.proc3829893.chain_3140,blat.proc3829893.chain_3143	4
scaffold_23	spliced_intron	5303670	5303795	+	asmbl_30854,asmbl_30856	none	STRG.25887.3,Trinity_GG_14289_c0_g1_i3,Trinity_GG_14289_c0_g1_i5,blat.proc3829883.chain_2769,blat.proc3829883.chain_2772	5	STRG.25887.1,STRG.25887.2,Trinity_GG_14289_c0_g1_i1,Trinity_GG_14289_c0_g1_i2,blat.proc3829883.chain_2768,blat.proc3829883.chain_2771	6
scaffold_2	ends_in_intron	16861215	16861215	+	asmbl_25185	none	blat.proc3829871.chain_2827	1	STRG.2599.3,blat.proc3829871.chain_2829	2
scaffold_10	retained_intron	6867580	6867786	-	asmbl_3425,asmbl_3427	none	blat.proc3829893.chain_990,blat.proc3829893.chain_996	2	STRG.12505.1,blat.proc3829893.chain_994,blat.proc3829893.chain_997,blat.proc3829893.chain_999	4
scaffold_2	retained_intron	17014420	17014564	-	asmbl_23720	none	STRG.2611.2,Trinity_GG_18427_c0_g1_i2,blat.proc3829887.chain_2415	3	STRG.2611.1,STRG.2611.3,blat.proc3829887.chain_2414,blat.proc3829887.chain_2416	4
scaffold_20	alt_acceptor	1754608	1754609	+	asmbl_25605,asmbl_25606,asmbl_25607	none	STRG.22907.1,STRG.22907.2,STRG.22907.3,Trinity_GG_12636_c0_g1_i2,Trinity_GG_12636_c0_g1_i4,blat.proc3829883.chain_55,blat.proc3829883.chain_56,blat.proc3829883.chain_58	8	STRG.22907.4	1
scaffold_7	retained_intron	18392948	18393030	-	asmbl_50291	none	Trinity_GG_22427_c0_g1_i8,blat.proc3829891.chain_1872	2	STRG.9659.5,Trinity_GG_22427_c0_g1_i15,blat.proc3829891.chain_1874	3
scaffold_8	alt_donor	18108298	18108299	+	asmbl_52527	none	STRG.10708.3,Trinity_GG_5942_c0_g1_i2,blat.proc3829875.chain_3203	3	STRG.10708.1,Trinity_GG_5942_c0_g1_i1,blat.proc3829875.chain_3201	3
scaffold_15	ends_in_intron	11492639	11492639	-	asmbl_15533	none	blat.proc3829895.chain_3384	1	STRG.18603.1,STRG.18603.2,blat.proc3829895.chain_3387	3
scaffold_21	alt_acceptor	679478	679479	-	asmbl_27364	none	STRG.23740.2,blat.proc3829899.chain_802	2	STRG.23740.4,blat.proc3829899.chain_803	2
scaffold_14	starts_in_intron	2377332	2377332	-	asmbl_12913,asmbl_12914,asmbl_12916,asmbl_12917,asmbl_12919,asmbl_12922,asmbl_12923,asmbl_12924	none	STRG.16839.1,STRG.16839.2,STRG.16839.5,blat.proc3829895.chain_1579,blat.proc3829895.chain_1580,blat.proc3829895.chain_1581,blat.proc3829895.chain_1585,blat.proc3829895.chain_1587,blat.proc3829895.chain_1588	9	STRG.16839.3,STRG.16839.4,STRG.16839.6	3
scaffold_4	starts_in_intron	1648653	1648653	+	asmbl_42453	none	Trinity_GG_2329_c0_g1_i2,blat.proc3829873.chain_534	2	STRG.4201.1,blat.proc3829873.chain_535	2
scaffold_1	retained_exon	15306266	15306424	-	asmbl_959	none	STRG.1094.1,blat.proc3829887.chain_994	2	STRG.1094.2	1
scaffold_10	retained_intron	13787525	13787965	+	asmbl_4895	none	STRG.12969.2	1	STRG.12969.1	1
scaffold_15	alternate_exon	15353552	15353700	+	asmbl_14712	none	STRG.18909.3	1	STRG.18909.1,STRG.18909.2,blat.proc3829879.chain_3500,blat.proc3829879.chain_3502,blat.proc3829879.chain_3504	5
scaffold_5	alternate_exon	15044119	15044234	-	asmbl_46016	none	STRG.6692.8	1	STRG.6692.3,STRG.6692.6,Trinity_GG_20768_c0_g2_i1,blat.proc3829889.chain_2744	4
scaffold_7	alternate_exon	4500524	4500580	-	asmbl_49680	none	blat.proc3829891.chain_1191	1	STRG.8813.1,STRG.8813.2,Trinity_GG_22050_c0_g1_i4,blat.proc3829891.chain_1190,blat.proc3829891.chain_1192,blat.proc3829891.chain_1193	6
scaffold_1	spliced_intron	16478811	16478993	-	asmbl_992,asmbl_993	none	STRG.1157.1,STRG.1157.2,blat.proc3829887.chain_1053,blat.proc3829887.chain_1057	4	blat.proc3829887.chain_1054	1
scaffold_19	spliced_intron	7586777	7586903	-	asmbl_21454,asmbl_21455	none	STRG.22232.1,blat.proc3829897.chain_2932	2	STRG.22232.2	1
scaffold_11	alternate_exon	2769484	2770026	+	asmbl_5333	none	STRG.13390.1,Trinity_GG_7353_c0_g2_i3,Trinity_GG_7353_c1_g1_i1,blat.proc3829877.chain_1882	4	STRG.13390.2	1
scaffold_2	ends_in_intron	4924791	4924791	-	asmbl_23143	none	Trinity_GG_18086_c0_g1_i3,blat.proc3829887.chain_1781	2	STRG.1914.1,blat.proc3829887.chain_1779,blat.proc3829887.chain_1780	3
scaffold_21	ends_in_intron	6130198	6130198	+	asmbl_28638	none	blat.proc3829883.chain_1273	1	STRG.24136.1,STRG.24136.2,blat.proc3829883.chain_1271,blat.proc3829883.chain_1272	4
scaffold_11	alternate_exon	3141570	3141619	-	asmbl_6507	none	STRG.13434.1,blat.proc3829893.chain_1872	2	STRG.13434.3	1
scaffold_16	retained_intron	429984	430051	-	asmbl_16041,asmbl_16046	none	blat.proc3829897.chain_16,blat.proc3829897.chain_19	2	STRG.19039.1,blat.proc3829897.chain_17,blat.proc3829897.chain_18,blat.proc3829897.chain_20,blat.proc3829897.chain_21,blat.proc3829897.chain_22,blat.proc3829897.chain_23,blat.proc3829897.chain_24,blat.proc3829897.chain_25,blat.proc3829897.chain_26,blat.proc3829897.chain_27	11
scaffold_3	retained_exon	11978355	11978535	+	asmbl_40336	none	STRG.3621.1,Trinity_GG_2035_c0_g1_i2,blat.proc3829873.chain_21	3	STRG.3621.3	1
scaffold_719	ends_in_intron	4568	4568	+	asmbl_51563	none	blat.proc3829885.chain_3420	1	STRG.30416.1,blat.proc3829885.chain_3419	2
scaffold_17	alt_acceptor	3998789	3998790	+	asmbl_17884	none	blat.proc3829881.chain_990	1	STRG.20145.2,blat.proc3829881.chain_989	2
scaffold_12	starts_in_intron	4201500	4201500	-	asmbl_7517	none	blat.proc3829893.chain_2947	1	STRG.14586.1,STRG.14586.2,blat.proc3829893.chain_2948	3
scaffold_28	alternate_exon	7306569	7307599	-	asmbl_37723	none	STRG.29781.4	1	STRG.29781.3	1
scaffold_2	starts_in_intron	6209061	6209061	-	asmbl_23214	none	blat.proc3829887.chain_1786	1	STRG.1985.1,blat.proc3829887.chain_1785,blat.proc3829887.chain_1787	3
scaffold_13	alternate_exon	7108380	7108463	+	asmbl_10998	none	STRG.15994.3,Trinity_GG_8796_c0_g1_i10,blat.proc3829879.chain_729	3	STRG.15994.1,STRG.15994.2,blat.proc3829879.chain_723	3
scaffold_14	alt_donor	9273884	9273885	-	asmbl_13344	none	STRG.17323.3	1	blat.proc3829895.chain_1994,blat.proc3829895.chain_1998,blat.proc3829895.chain_1999	3
scaffold_8	ends_in_intron	6114834	6114834	+	asmbl_51929	none	blat.proc3829875.chain_2529	1	STRG.10007.1,STRG.10007.2,Trinity_GG_5582_c0_g1_i2,Trinity_GG_5582_c0_g1_i5,Trinity_GG_5582_c0_g1_i7,blat.proc3829875.chain_2522,blat.proc3829875.chain_2523,blat.proc3829875.chain_2527	8
scaffold_14	spliced_intron	8695572	8695770	-	asmbl_13318,asmbl_13321	none	STRG.17289.1,blat.proc3829895.chain_2016,blat.proc3829895.chain_2019	3	blat.proc3829895.chain_2018	1
scaffold_9	alt_donor	16567511	16567512	+	asmbl_54574,asmbl_54576	none	Trinity_GG_6586_c0_g1_i15,Trinity_GG_6586_c0_g1_i21,blat.proc3829877.chain_554,blat.proc3829877.chain_556	4	STRG.11798.1,STRG.11798.2,Trinity_GG_6586_c0_g1_i10,Trinity_GG_6586_c0_g1_i14,Trinity_GG_6586_c0_g1_i23,Trinity_GG_6586_c0_g1_i5,blat.proc3829877.chain_552,blat.proc3829877.chain_555,blat.proc3829877.chain_557,blat.proc3829877.chain_558	10
scaffold_13	starts_in_intron	6615865	6615865	+	asmbl_10940	none	blat.proc3829879.chain_587	1	STRG.15948.1,blat.proc3829879.chain_586,blat.proc3829879.chain_588,blat.proc3829879.chain_589	4
scaffold_14	ends_in_intron	177902	177902	-	asmbl_12770,asmbl_12771	none	STRG.16696.3,blat.proc3829895.chain_1363	2	STRG.16696.1,blat.proc3829895.chain_1362	2
scaffold_3	alternate_exon	18322686	18322716	-	asmbl_39554	none	STRG.4032.2	1	STRG.4032.1	1
scaffold_4	spliced_intron	12628852	12629159	-	asmbl_41681,asmbl_41683	none	STRG.4901.1,STRG.4901.3,blat.proc3829889.chain_893,blat.proc3829889.chain_896	4	STRG.4901.2,blat.proc3829889.chain_895	2
scaffold_3	retained_intron	14332211	14332313	+	asmbl_40469,asmbl_40470	none	STRG.3778.1,blat.proc3829873.chain_178,blat.proc3829873.chain_180	3	blat.proc3829873.chain_179	1
scaffold_23	alternate_exon	2414859	2415142	+	asmbl_30708	none	STRG.25693.4	1	STRG.25693.2	1
scaffold_3	retained_intron	13327483	13327589	-	asmbl_39201,asmbl_39202	none	STRG.3677.1,STRG.3677.2	2	Trinity_GG_19030_c0_g1_i2,blat.proc3829887.chain_3455	2
scaffold_4	retained_intron	6286227	6286323	-	asmbl_41409	none	Trinity_GG_19560_c0_g1_i9,blat.proc3829889.chain_662	2	STRG.4498.1,Trinity_GG_19560_c0_g1_i2,Trinity_GG_19560_c0_g1_i6,blat.proc3829889.chain_665,blat.proc3829889.chain_666	5
scaffold_14	alternate_exon	15357909	15358036	-	asmbl_13699	none	STRG.17750.2,blat.proc3829895.chain_2455	2	STRG.17750.1,blat.proc3829895.chain_2456	2
scaffold_13	alt_acceptor	3705377	3705378	-	asmbl_9524,asmbl_9525,asmbl_9526	none	STRG.15671.1,STRG.15671.4,STRG.15671.6,blat.proc3829895.chain_439	4	STRG.15671.5,blat.proc3829895.chain_438	2
scaffold_5	retained_intron	6578599	6580344	-	asmbl_45485	none	STRG.6049.1,blat.proc3829889.chain_2145	2	STRG.6049.2,blat.proc3829889.chain_2147	2
scaffold_15	retained_intron	7254010	7254095	-	asmbl_15307	none	Trinity_GG_27299_c0_g1_i2,blat.proc3829895.chain_3058	2	STRG.18313.1,blat.proc3829895.chain_3059	2
scaffold_7	alternate_exon	2499748	2502741	-	asmbl_49567	none	STRG.8677.1,Trinity_GG_21954_c1_g1_i1	2	STRG.8677.3	1
scaffold_14	retained_intron	7480485	7480705	-	asmbl_13196,asmbl_13197	none	STRG.17176.1,STRG.17176.2,Trinity_GG_26640_c1_g1_i1,blat.proc3829895.chain_1878,blat.proc3829895.chain_1880	5	STRG.17176.3	1
scaffold_4	alt_acceptor	12786735	12786736	+	asmbl_43085	none	STRG.4920.3	1	STRG.4920.1,STRG.4920.2,blat.proc3829873.chain_1273,blat.proc3829873.chain_1275	4
scaffold_1	starts_in_intron	6573013	6573013	-	asmbl_380	none	blat.proc3829887.chain_340	1	STRG.447.1,blat.proc3829887.chain_339	2
scaffold_9	alt_acceptor	13297189	13297190	-	asmbl_55380,asmbl_55386	none	STRG.11625.5,STRG.11625.6	2	STRG.11625.1,STRG.11625.2,STRG.11625.3,STRG.11625.4,STRG.11625.7	5
scaffold_15	alt_acceptor	5368983	5368984	-	asmbl_15210	none	STRG.18225.2	1	STRG.18225.1	1
scaffold_15	alt_acceptor	15410181	15410182	+	asmbl_14716,asmbl_14718,asmbl_14723,asmbl_14725	none	STRG.18921.10,STRG.18921.3,STRG.18921.7,STRG.18921.9,blat.proc3829879.chain_3514,blat.proc3829879.chain_3517	6	STRG.18921.1,STRG.18921.2,STRG.18921.4,STRG.18921.5,STRG.18921.6,STRG.18921.8,blat.proc3829879.chain_3515,blat.proc3829879.chain_3518	8
scaffold_12	alt_donor	1205425	1205426	-	asmbl_7431	none	STRG.14443.1	1	blat.proc3829877.chain_2944	1
scaffold_11	skipped_exon	3607163	3608883	-	asmbl_6534	none	STRG.13479.2,blat.proc3829893.chain_1927	2	STRG.13479.1,blat.proc3829893.chain_1926	2
scaffold_1	ends_in_intron	15887830	15887830	-	asmbl_968	none	Trinity_GG_17608_c1_g1_i1,blat.proc3829887.chain_1020	2	STRG.1116.2	1
scaffold_26	retained_intron	7900944	7901028	+	asmbl_35680	none	blat.proc3829885.chain_1418	1	STRG.28392.1,STRG.28392.2,blat.proc3829885.chain_1420	3
scaffold_11	alt_acceptor	8331356	8331357	+	asmbl_5716	none	Trinity_GG_7590_c0_g1_i2,blat.proc3829877.chain_2258	2	STRG.13833.1,Trinity_GG_7590_c0_g1_i1,blat.proc3829877.chain_2259	3
scaffold_9	alternate_exon	6992181	6992293	+	asmbl_54107,asmbl_54108	none	STRG.11201.2,STRG.11201.3,blat.proc3829875.chain_3701,blat.proc3829875.chain_3703	4	STRG.11201.1,blat.proc3829875.chain_3702	2
scaffold_20	starts_in_intron	7185485	7185485	-	asmbl_26804,asmbl_26806	none	blat.proc3829899.chain_303,blat.proc3829899.chain_305	2	STRG.23274.1,blat.proc3829899.chain_302,blat.proc3829899.chain_304,blat.proc3829899.chain_306	4
scaffold_28	alternate_exon	1705888	1709950	-	asmbl_37332	none	STRG.29347.1,blat.proc3829901.chain_2393	2	STRG.29347.3	1
scaffold_4	alternate_exon	10463504	10463558	+	asmbl_42998	none	STRG.4790.2,blat.proc3829873.chain_1087	2	STRG.4790.1,blat.proc3829873.chain_1086	2
scaffold_1	retained_intron	5734768	5734894	+	asmbl_1761	none	blat.proc3829871.chain_442	1	STRG.380.1,STRG.380.2,STRG.380.3,blat.proc3829871.chain_443,blat.proc3829871.chain_446	5
scaffold_13	alt_acceptor	5131753	5131754	+	asmbl_10809	none	STRG.15801.2	1	STRG.15801.1,STRG.15801.3,blat.proc3829879.chain_497,blat.proc3829879.chain_499	4
scaffold_24	retained_intron	9064471	9064576	+	asmbl_32491	none	Trinity_GG_14859_c0_g1_i1,blat.proc3829885.chain_12	2	STRG.26913.1,blat.proc3829885.chain_14	2
scaffold_20	skipped_exon	2391876	2393012	+	asmbl_25639	none	STRG.22959.2	1	STRG.22959.1	1
scaffold_13	alt_acceptor	4655372	4655373	+	asmbl_10800,asmbl_10801	none	STRG.15788.3,blat.proc3829879.chain_486,blat.proc3829879.chain_487	3	STRG.15788.1,STRG.15788.2	2
scaffold_18	alternate_exon	13482480	13482599	-	asmbl_20202	none	STRG.21778.3,blat.proc3829897.chain_2500	2	STRG.21778.1,blat.proc3829897.chain_2499	2
scaffold_15	skipped_exon	12030067	12032794	+	asmbl_14456,asmbl_14459	none	STRG.18636.1,Trinity_GG_10227_c0_g1_i1,Trinity_GG_10227_c0_g1_i3,blat.proc3829879.chain_3227,blat.proc3829879.chain_3228	5	STRG.18636.2,Trinity_GG_10227_c0_g1_i2,blat.proc3829879.chain_3226	3
scaffold_25	alternate_exon	3687272	3687407	+	asmbl_33450	none	STRG.27297.2	1	STRG.27297.1,blat.proc3829885.chain_327,blat.proc3829885.chain_328	3
scaffold_27	ends_in_intron	6592486	6592486	-	asmbl_37018	none	STRG.29012.2,blat.proc3829901.chain_2169	2	STRG.29012.1,blat.proc3829901.chain_2168	2
scaffold_15	spliced_intron	12390490	12391005	-	asmbl_15587,asmbl_15588	none	STRG.18686.1,STRG.18686.4,blat.proc3829895.chain_3453	3	Trinity_GG_27509_c0_g1_i5,blat.proc3829895.chain_3450	2
scaffold_7	alt_acceptor	13866546	13866547	-	asmbl_50139	none	blat.proc3829891.chain_1673	1	STRG.9469.1,blat.proc3829891.chain_1674	2
scaffold_5	ends_in_intron	6578407	6578407	-	asmbl_45487	none	Trinity_GG_20422_c0_g1_i2,blat.proc3829889.chain_2150	2	STRG.6049.1,STRG.6049.2,blat.proc3829889.chain_2145,blat.proc3829889.chain_2147	4
scaffold_5	retained_intron	9711452	9711983	+	asmbl_44300	none	blat.proc3829873.chain_2438	1	STRG.6273.1,blat.proc3829873.chain_2437	2
scaffold_2	starts_in_intron	14643641	14643641	+	asmbl_24994	none	STRG.2459.2	1	STRG.2459.1	1
scaffold_21	alt_acceptor	6507807	6507808	+	asmbl_28677	none	STRG.24158.3	1	STRG.24158.1,STRG.24158.2,blat.proc3829883.chain_1306,blat.proc3829883.chain_1307	4
scaffold_18	alt_acceptor	1686752	1686753	-	asmbl_19671	none	STRG.21044.2,blat.proc3829897.chain_1940	2	STRG.21044.1,blat.proc3829897.chain_1941	2
scaffold_6	retained_intron	18025101	18025221	-	asmbl_49160	none	blat.proc3829891.chain_776	1	STRG.8482.1,blat.proc3829891.chain_775	2
scaffold_2	starts_in_intron	2292262	2292262	-	asmbl_22906	none	blat.proc3829887.chain_1458	1	STRG.1671.1,STRG.1671.2	2
scaffold_13	alternate_exon	1325058	1325410	+	asmbl_10528	none	STRG.15490.2,blat.proc3829879.chain_237	2	STRG.15490.1,blat.proc3829879.chain_238	2
scaffold_11	alt_acceptor	17070081	17070082	-	asmbl_7219,asmbl_7220	none	STRG.14359.1,STRG.14359.2,blat.proc3829893.chain_2779,blat.proc3829893.chain_2780	4	STRG.14359.3	1
scaffold_6	retained_intron	4319469	4319969	+	asmbl_46821,asmbl_46823,asmbl_46826	none	STRG.7402.1,Trinity_GG_4053_c2_g1_i2,blat.proc3829873.chain_3511,blat.proc3829873.chain_3513,blat.proc3829873.chain_3514	5	blat.proc3829873.chain_3512	1
scaffold_1	alternate_exon	18739071	18741277	-	asmbl_1121	none	STRG.1303.2,blat.proc3829887.chain_1196	2	STRG.1303.3,blat.proc3829887.chain_1197	2
scaffold_5	alt_donor	19275222	19275223	+	asmbl_44965	none	STRG.7020.2,Trinity_GG_3869_c0_g1_i2,blat.proc3829873.chain_3181	3	STRG.7020.4	1
scaffold_3	spliced_intron	15573354	15573483	+	asmbl_40530,asmbl_40531	none	STRG.3845.1,STRG.3845.3,blat.proc3829873.chain_216,blat.proc3829873.chain_218	4	STRG.3845.4,blat.proc3829873.chain_217,blat.proc3829873.chain_219	3
scaffold_2	ends_in_intron	2333977	2333977	-	asmbl_22917	none	blat.proc3829887.chain_1520	1	STRG.1681.1,blat.proc3829887.chain_1521	2
scaffold_2	alternate_exon	4133155	4140611	+	asmbl_24359	none	blat.proc3829871.chain_1835	1	Trinity_GG_1003_c0_g1_i2,blat.proc3829871.chain_1836	2
scaffold_5	alt_donor	16285475	16285476	+	asmbl_44736	none	Trinity_GG_3715_c0_g1_i5,blat.proc3829873.chain_2927	2	Trinity_GG_3715_c0_g1_i3,Trinity_GG_3715_c0_g1_i6,blat.proc3829873.chain_2925,blat.proc3829873.chain_2926	4
scaffold_10	starts_in_intron	14692629	14692629	+	asmbl_4925	none	blat.proc3829877.chain_1534	1	STRG.13008.1,STRG.13008.2,STRG.13008.3,blat.proc3829877.chain_1535,blat.proc3829877.chain_1537	5
scaffold_17	alternate_exon	13965065	13965186	-	asmbl_19438,asmbl_19440	none	STRG.20874.2,blat.proc3829897.chain_1761	2	STRG.20874.1,blat.proc3829897.chain_1762	2
scaffold_6	spliced_intron	18269465	18269732	+	asmbl_47768,asmbl_47769	none	STRG.8494.1,STRG.8494.2,blat.proc3829875.chain_916	3	STRG.8494.3,Trinity_GG_4678_c0_g1_i1,blat.proc3829875.chain_914	3
scaffold_3	alternate_exon	6655641	6659644	+	asmbl_40061,asmbl_40066,asmbl_40068	none	STRG.3290.4,STRG.3290.5,blat.proc3829871.chain_3459,blat.proc3829871.chain_3466,blat.proc3829871.chain_3467,blat.proc3829871.chain_3468,blat.proc3829871.chain_3470	7	blat.proc3829871.chain_3457	1
scaffold_20	spliced_intron	631243	631334	-	asmbl_26437	none	STRG.22751.3,blat.proc3829897.chain_3523	2	blat.proc3829897.chain_3525	1
scaffold_1	ends_in_intron	6283833	6283833	-	asmbl_339,asmbl_347	none	STRG.425.6,STRG.425.7,Trinity_GG_17251_c0_g1_i12,Trinity_GG_17251_c0_g1_i2,blat.proc3829887.chain_329,blat.proc3829887.chain_335	6	STRG.425.1,STRG.425.2,STRG.425.3,STRG.425.4,blat.proc3829887.chain_325,blat.proc3829887.chain_328,blat.proc3829887.chain_330,blat.proc3829887.chain_333,blat.proc3829887.chain_334	9
scaffold_4	ends_in_intron	14571131	14571131	+	asmbl_43225	none	blat.proc3829873.chain_1401	1	STRG.5074.1,STRG.5074.2,blat.proc3829873.chain_1399,blat.proc3829873.chain_1400	4
scaffold_27	retained_exon	2641397	2641510	+	asmbl_36057	none	STRG.28719.2,blat.proc3829885.chain_1793	2	STRG.28719.1,blat.proc3829885.chain_1794	2
scaffold_10	spliced_intron	7672393	7672816	+	asmbl_4574	none	STRG.12547.4	1	STRG.12547.2	1
scaffold_5	alt_donor	3592702	3592703	-	asmbl_45310	none	STRG.5822.3,blat.proc3829889.chain_1928	2	STRG.5822.2,STRG.5822.4,STRG.5822.5,blat.proc3829889.chain_1927	4
scaffold_6	alt_acceptor	13277283	13277284	+	asmbl_47452,asmbl_47457	none	STRG.8085.3,blat.proc3829875.chain_489,blat.proc3829875.chain_490	3	Trinity_GG_4436_c0_g1_i6,blat.proc3829875.chain_491	2
scaffold_6	retained_intron	12653940	12654089	+	asmbl_47365	none	Trinity_GG_4365_c0_g1_i3,blat.proc3829875.chain_368	2	STRG.8019.1,blat.proc3829875.chain_366	2
scaffold_15	alt_acceptor	15435985	15435986	-	asmbl_15799,asmbl_15802	none	STRG.18920.2,blat.proc3829895.chain_3633,blat.proc3829895.chain_3635	3	blat.proc3829895.chain_3630	1
scaffold_19	spliced_intron	628249	628359	-	asmbl_21195	none	Trinity_GG_29190_c0_g1_i2,blat.proc3829897.chain_2603	2	STRG.21833.1,STRG.21833.2,STRG.21833.3,Trinity_GG_29190_c0_g1_i1,blat.proc3829897.chain_2601	5
scaffold_5	starts_in_intron	12218076	12218076	-	asmbl_45819	none	Trinity_GG_20628_c0_g1_i3,blat.proc3829889.chain_2499	2	STRG.6446.1,Trinity_GG_20628_c0_g1_i2,blat.proc3829889.chain_2500	3
scaffold_14	skipped_exon	11572188	11574063	-	asmbl_13481,asmbl_13485	none	STRG.17490.5,blat.proc3829895.chain_2173,blat.proc3829895.chain_2180	3	STRG.17490.1,STRG.17490.4,blat.proc3829895.chain_2172,blat.proc3829895.chain_2179	4
scaffold_12	alt_donor	3633547	3633548	+	asmbl_8523	none	STRG.14560.2	1	STRG.14560.1,blat.proc3829877.chain_3014	2
scaffold_16	spliced_intron	787406	787665	+	asmbl_16835,asmbl_16836,asmbl_16837	none	STRG.19046.1,STRG.19046.2,STRG.19046.3,blat.proc3829879.chain_3590,blat.proc3829879.chain_3591,blat.proc3829879.chain_3593	6	blat.proc3829879.chain_3589,blat.proc3829879.chain_3592	2
scaffold_14	spliced_intron	15693711	15693818	-	asmbl_13719	none	STRG.17796.3	1	STRG.17796.1	1
scaffold_21	alternate_exon	10008163	10008252	-	asmbl_28025	none	blat.proc3829899.chain_1491	1	STRG.24450.1,blat.proc3829899.chain_1490	2
scaffold_28	alt_acceptor	5914941	5914942	+	asmbl_38306	none	STRG.29698.3,Trinity_GG_16459_c0_g1_i1,blat.proc3829885.chain_2804	3	STRG.29698.1,STRG.29698.2,Trinity_GG_16459_c0_g1_i3,blat.proc3829885.chain_2805	4
scaffold_1	ends_in_intron	11394198	11394198	+	asmbl_2084	none	Trinity_GG_444_c0_g1_i2,blat.proc3829871.chain_765	2	STRG.746.1,blat.proc3829871.chain_764,blat.proc3829871.chain_766	3
scaffold_21	alt_acceptor	1156193	1156194	+	asmbl_28354	none	STRG.23777.2,Trinity_GG_13184_c0_g1_i2,blat.proc3829883.chain_944	3	STRG.23777.1,Trinity_GG_13184_c0_g1_i1,blat.proc3829883.chain_945	3
scaffold_22	retained_intron	7488327	7488420	-	asmbl_30172	none	STRG.25072.2,Trinity_GG_31012_c0_g1_i1,blat.proc3829899.chain_2157	3	STRG.25072.1,blat.proc3829899.chain_2158	2
scaffold_7	alt_acceptor	12053851	12053852	+	asmbl_51085	none	Trinity_GG_5159_c0_g1_i4,blat.proc3829875.chain_1757	2	STRG.9298.1,STRG.9298.2,blat.proc3829875.chain_1756	3
scaffold_18	retained_intron	1899014	1899766	-	asmbl_19690,asmbl_19691,asmbl_19695,asmbl_19696,asmbl_19701,asmbl_19702,asmbl_19705	none	STRG.21072.2,STRG.21072.6,STRG.21072.7,blat.proc3829897.chain_1897,blat.proc3829897.chain_1899,blat.proc3829897.chain_1900,blat.proc3829897.chain_1901	7	STRG.21072.10,STRG.21072.3,STRG.21072.4,STRG.21072.9,blat.proc3829897.chain_1890,blat.proc3829897.chain_1892,blat.proc3829897.chain_1898,blat.proc3829897.chain_1902	8
scaffold_24	ends_in_intron	442919	442919	+	asmbl_32027	none	Trinity_GG_14559_c0_g1_i7,blat.proc3829883.chain_3257	2	STRG.26319.1,blat.proc3829883.chain_3261,blat.proc3829883.chain_3262	3
scaffold_26	alternate_exon	7488320	7488449	+	asmbl_35641	none	STRG.28365.4,Trinity_GG_15686_c0_g2_i1,blat.proc3829885.chain_1382	3	STRG.28365.2,blat.proc3829885.chain_1381,blat.proc3829885.chain_1383	3
scaffold_10	spliced_intron	7276486	7276839	+	asmbl_4550,asmbl_4551,asmbl_4555,asmbl_4556	none	STRG.12531.1,STRG.12531.2,blat.proc3829877.chain_1100,blat.proc3829877.chain_1101,blat.proc3829877.chain_1103,blat.proc3829877.chain_1104	6	STRG.12531.3,blat.proc3829877.chain_1105	2
scaffold_3	retained_exon	11645052	11645162	+	asmbl_40322	none	STRG.3594.1,blat.proc3829873.chain_4	2	blat.proc3829873.chain_5	1
scaffold_4	alternate_exon	8983311	8983363	+	asmbl_42934	none	STRG.4710.2	1	STRG.4710.1,blat.proc3829873.chain_1072	2
scaffold_8	alternate_exon	3049099	3049240	+	asmbl_51731	none	STRG.9810.2,Trinity_GG_5448_c0_g1_i1	2	STRG.9810.1,blat.proc3829875.chain_2286	2
scaffold_16	ends_in_intron	5491852	5491852	+	asmbl_17012	none	Trinity_GG_10560_c1_g1_i1,blat.proc3829881.chain_147	2	STRG.19295.1	1
scaffold_17	spliced_intron	2684608	2684736	+	asmbl_17809,asmbl_17810,asmbl_17812	none	STRG.20051.1,STRG.20051.2,blat.proc3829881.chain_882,blat.proc3829881.chain_883,blat.proc3829881.chain_884	5	blat.proc3829881.chain_881	1
scaffold_6	alt_donor	8010931	8010932	-	asmbl_48462	none	STRG.7672.2	1	STRG.7672.1,blat.proc3829889.chain_3653,blat.proc3829889.chain_3654	3
scaffold_300	alternate_exon	1865	2058	+	asmbl_40852	none	blat.proc3829885.chain_3281	1	STRG.30247.1,STRG.30247.2,STRG.30247.3,blat.proc3829885.chain_3278,blat.proc3829885.chain_3279	5
scaffold_18	alt_donor	9682740	9682741	-	asmbl_20110,asmbl_20111	none	STRG.21570.2,STRG.21570.3,blat.proc3829897.chain_2417	3	STRG.21570.1	1
scaffold_3	retained_intron	13988445	13988538	+	asmbl_40434,asmbl_40435,asmbl_40436,asmbl_40442	none	STRG.3741.1,STRG.3741.2,STRG.3741.3,STRG.3741.5,Trinity_GG_2070_c0_g1_i1,Trinity_GG_2070_c0_g1_i2,Trinity_GG_2070_c0_g1_i4,blat.proc3829873.chain_86,blat.proc3829873.chain_87,blat.proc3829873.chain_88	10	STRG.3741.4	1
scaffold_7	ends_in_intron	5147	5147	-	asmbl_49468	none	Trinity_GG_21909_c0_g1_i2,blat.proc3829891.chain_905	2	STRG.8570.1	1
scaffold_19	alt_acceptor	6238941	6238942	-	asmbl_21409	none	STRG.22152.1	1	blat.proc3829897.chain_2828	1
scaffold_5	spliced_intron	17301487	17301540	+	asmbl_44821	none	STRG.6893.3	1	STRG.6893.1,STRG.6893.2,Trinity_GG_3797_c1_g1_i1,blat.proc3829873.chain_3050	4
scaffold_25	alt_donor	4810572	4810573	+	asmbl_33529	none	STRG.27400.1,Trinity_GG_15078_c0_g1_i6,blat.proc3829885.chain_375	3	STRG.27400.2,Trinity_GG_15078_c0_g1_i1,Trinity_GG_15078_c0_g1_i5,blat.proc3829885.chain_376,blat.proc3829885.chain_377	5
scaffold_8	spliced_intron	8554099	8555514	-	asmbl_52953	none	blat.proc3829891.chain_2303	1	STRG.10106.1,Trinity_GG_22674_c2_g1_i7,blat.proc3829891.chain_2300,blat.proc3829891.chain_2301,blat.proc3829891.chain_2302,blat.proc3829891.chain_2304	6
scaffold_2	spliced_intron	7782690	7785425	+	asmbl_24609,asmbl_24611,asmbl_24612	none	STRG.2076.4,STRG.2076.7,blat.proc3829871.chain_2202,blat.proc3829871.chain_2207,blat.proc3829871.chain_2213	5	STRG.2076.1,Trinity_GG_1189_c0_g1_i13,Trinity_GG_1189_c0_g1_i14,Trinity_GG_1189_c0_g1_i3,blat.proc3829871.chain_2203,blat.proc3829871.chain_2204,blat.proc3829871.chain_2210,blat.proc3829871.chain_2212	8
scaffold_11	retained_intron	17084606	17085018	-	asmbl_7224	none	STRG.14362.1,Trinity_GG_25027_c0_g1_i5,blat.proc3829893.chain_2769	3	STRG.14362.2,STRG.14362.3,STRG.14362.4,STRG.14362.5,blat.proc3829893.chain_2767,blat.proc3829893.chain_2768,blat.proc3829893.chain_2771,blat.proc3829893.chain_2772	8
scaffold_11	spliced_intron	5821149	5821247	-	asmbl_6655	none	STRG.13636.1,blat.proc3829893.chain_2064	2	blat.proc3829893.chain_2066	1
scaffold_4	skipped_exon	663764	664579	-	asmbl_41083	none	STRG.4146.3	1	STRG.4146.1,STRG.4146.2,STRG.4146.4	3
scaffold_11	alt_acceptor	1156381	1156382	+	asmbl_5284,asmbl_5285	none	Trinity_GG_7267_c0_g1_i5,Trinity_GG_7267_c0_g1_i7,blat.proc3829877.chain_1723,blat.proc3829877.chain_1726	4	STRG.13301.1,Trinity_GG_7267_c0_g1_i2,blat.proc3829877.chain_1725	3
scaffold_15	ends_in_intron	2077353	2077353	-	asmbl_14998	none	Trinity_GG_27104_c0_g1_i4,blat.proc3829895.chain_2678	2	STRG.17986.1,STRG.17986.2,STRG.17986.3,blat.proc3829895.chain_2679	4
scaffold_9	starts_in_intron	5297709	5297709	+	asmbl_54009	none	STRG.11103.4,blat.proc3829875.chain_3570	2	STRG.11103.1,STRG.11103.2,STRG.11103.3,blat.proc3829875.chain_3571,blat.proc3829875.chain_3572,blat.proc3829875.chain_3574,blat.proc3829875.chain_3576	7
scaffold_7	starts_in_intron	12370477	12370477	+	asmbl_51133	none	blat.proc3829875.chain_1802	1	STRG.9325.1,blat.proc3829875.chain_1799,blat.proc3829875.chain_1800,blat.proc3829875.chain_1804	4
scaffold_13	retained_intron	3777369	3777440	-	asmbl_9538	none	blat.proc3829895.chain_432,blat.proc3829895.chain_443	2	blat.proc3829895.chain_433,blat.proc3829895.chain_447	2
scaffold_1	alt_donor	1417442	1417443	+	asmbl_1478	none	STRG.86.1,Trinity_GG_65_c0_g1_i1,blat.proc3829871.chain_115	3	STRG.86.2,Trinity_GG_65_c0_g1_i2,blat.proc3829871.chain_114	3
scaffold_6	spliced_intron	12480315	12482223	+	asmbl_47334,asmbl_47335,asmbl_47336,asmbl_47337	none	STRG.7999.1,STRG.7999.2,STRG.7999.4,blat.proc3829875.chain_407,blat.proc3829875.chain_408,blat.proc3829875.chain_409	6	STRG.7999.3,Trinity_GG_4391_c0_g1_i5,Trinity_GG_4391_c1_g1_i1,Trinity_GG_4391_c2_g1_i1,blat.proc3829875.chain_406,blat.proc3829875.chain_410,blat.proc3829875.chain_411	7
scaffold_13	retained_exon	519725	519848	+	asmbl_10453	none	Trinity_GG_8491_c0_g1_i2,blat.proc3829879.chain_113	2	STRG.15434.3,Trinity_GG_8491_c0_g1_i1,blat.proc3829879.chain_110	3
scaffold_19	ends_in_intron	12328760	12328760	+	asmbl_22589	none	Trinity_GG_12477_c0_g1_i3,blat.proc3829881.chain_3506	2	STRG.22550.1,Trinity_GG_12477_c0_g1_i2,blat.proc3829881.chain_3504	3
scaffold_1	retained_intron	5736121	5736230	+	asmbl_1760	none	Trinity_GG_251_c0_g1_i1,blat.proc3829871.chain_444	2	STRG.380.1,STRG.380.2,STRG.380.3,blat.proc3829871.chain_443,blat.proc3829871.chain_445,blat.proc3829871.chain_446	6
scaffold_26	retained_intron	4136117	4136364	-	asmbl_34807,asmbl_34809	none	STRG.28100.4,blat.proc3829901.chain_1324,blat.proc3829901.chain_1325	3	STRG.28100.1,STRG.28100.2,STRG.28100.3,blat.proc3829901.chain_1326	4
scaffold_5	alternate_exon	16287030	16290085	+	asmbl_44738	none	blat.proc3829873.chain_2945	1	STRG.6811.3,Trinity_GG_3725_c0_g1_i3,blat.proc3829873.chain_2944	3
scaffold_2	alternate_exon	18647960	18651194	-	asmbl_23826	none	STRG.2740.1,blat.proc3829887.chain_2579	2	STRG.2740.2	1
scaffold_12	starts_in_intron	13392327	13392327	-	asmbl_8079	none	blat.proc3829893.chain_3548	1	STRG.15208.1,STRG.15208.2,STRG.15208.3,blat.proc3829893.chain_3544,blat.proc3829893.chain_3545,blat.proc3829893.chain_3546,blat.proc3829893.chain_3547	7
scaffold_1	alternate_exon	12750488	12750834	-	asmbl_758	none	STRG.892.1,blat.proc3829887.chain_754	2	STRG.892.5,Trinity_GG_17462_c0_g1_i4,blat.proc3829887.chain_757	3
scaffold_15	spliced_intron	6794505	6794579	+	asmbl_14206,asmbl_14207	none	STRG.18289.1,STRG.18289.2,Trinity_GG_10013_c0_g1_i1,Trinity_GG_10013_c0_g1_i2,blat.proc3829879.chain_2887,blat.proc3829879.chain_2888	6	STRG.18289.3	1
scaffold_3	retained_intron	1767415	1767435	+	asmbl_39833,asmbl_39835	none	STRG.2990.2,Trinity_GG_1694_c0_g1_i5	2	STRG.2990.1	1
scaffold_26	alt_acceptor	133288	133289	-	asmbl_34648	none	blat.proc3829901.chain_1099	1	STRG.27819.1,blat.proc3829901.chain_1098	2
scaffold_2	alt_donor	14015491	14015492	+	asmbl_24898	none	STRG.2395.2,blat.proc3829871.chain_2482	2	STRG.2395.1,blat.proc3829871.chain_2483	2
scaffold_17	retained_exon	2355867	2355972	+	asmbl_17768,asmbl_17769	none	STRG.20017.2,STRG.20017.7	2	STRG.20017.1,blat.proc3829881.chain_852,blat.proc3829881.chain_853	3
scaffold_27	alt_acceptor	2820672	2820673	+	asmbl_36081	none	STRG.28742.4	1	STRG.28742.2,STRG.28742.3,blat.proc3829885.chain_1802,blat.proc3829885.chain_1803	4
scaffold_23	retained_intron	5849629	5849725	-	asmbl_31670	none	STRG.25935.2,blat.proc3829899.chain_3069	2	STRG.25935.1,Trinity_GG_31533_c0_g1_i1,blat.proc3829899.chain_3068	3
scaffold_27	alternate_exon	8935439	8935525	-	asmbl_37075	none	STRG.29117.2	1	STRG.29117.1	1
scaffold_5	retained_intron	9704594	9704702	-	asmbl_45677,asmbl_45680	none	blat.proc3829889.chain_2370,blat.proc3829889.chain_2373,blat.proc3829889.chain_2376	3	blat.proc3829889.chain_2369	1
scaffold_13	alternate_exon	6395125	6396105	+	asmbl_10909,asmbl_10916	none	STRG.15914.1,STRG.15914.5,Trinity_GG_8718_c0_g1_i1,blat.proc3829879.chain_557	4	Trinity_GG_8718_c0_g1_i3,blat.proc3829879.chain_554	2
scaffold_23	alt_acceptor	316983	316984	-	asmbl_31299	none	STRG.25533.1,blat.proc3829899.chain_2596	2	STRG.25533.2	1
scaffold_17	alt_acceptor	2740165	2740166	-	asmbl_18826	none	STRG.20064.3	1	STRG.20064.2,Trinity_GG_28285_c1_g1_i1,blat.proc3829897.chain_1037	3
scaffold_21	alt_acceptor	1684481	1684482	-	asmbl_27440	none	STRG.23805.2	1	STRG.23805.1,blat.proc3829899.chain_871	2
scaffold_3	spliced_intron	1767415	1767435	+	asmbl_39834	none	STRG.2990.1	1	STRG.2990.2,Trinity_GG_1694_c0_g1_i5	2
scaffold_5	ends_in_intron	15505585	15505585	-	asmbl_46065	none	blat.proc3829889.chain_2804	1	STRG.6731.1,STRG.6731.2,STRG.6731.3,blat.proc3829889.chain_2802,blat.proc3829889.chain_2803	5
scaffold_17	retained_intron	14546213	14546347	+	asmbl_18528	none	STRG.20918.2,Trinity_GG_11505_c0_g1_i1,Trinity_GG_11505_c0_g1_i2,blat.proc3829881.chain_1765	4	STRG.20918.1	1
scaffold_28	alt_acceptor	4132060	4132061	+	asmbl_38208	none	STRG.29584.3	1	STRG.29584.1,STRG.29584.2,blat.proc3829885.chain_2716	3
scaffold_22	retained_intron	1013399	1013787	-	asmbl_29905	none	Trinity_GG_30832_c0_g1_i3,blat.proc3829899.chain_1859	2	STRG.24743.2,blat.proc3829899.chain_1858	2
scaffold_19	alt_donor	11560079	11560080	-	asmbl_21633	none	STRG.22479.1,Trinity_GG_29507_c0_g1_i5,blat.proc3829897.chain_3145	3	Trinity_GG_29507_c0_g1_i2,blat.proc3829897.chain_3143	2
scaffold_26	retained_exon	5894474	5894601	-	asmbl_34913,asmbl_34914,asmbl_34919	none	STRG.28281.1,STRG.28281.2,blat.proc3829901.chain_1395,blat.proc3829901.chain_1396,blat.proc3829901.chain_1397	5	STRG.28281.3	1
scaffold_11	starts_in_intron	4851645	4851645	-	asmbl_6616	none	blat.proc3829893.chain_1995	1	STRG.13571.1,Trinity_GG_24590_c0_g1_i2,blat.proc3829893.chain_1996	3
scaffold_22	spliced_intron	4220495	4220866	-	asmbl_29977,asmbl_29978,asmbl_29979,asmbl_29980,asmbl_29986,asmbl_29990	none	STRG.24838.1,STRG.24838.2,STRG.24838.3,STRG.24838.4,blat.proc3829899.chain_1976,blat.proc3829899.chain_1977	6	blat.proc3829899.chain_1975	1
scaffold_17	alt_acceptor	5137331	5137332	-	asmbl_18961	none	STRG.20232.2,blat.proc3829897.chain_1206	2	STRG.20232.1,STRG.20232.3,blat.proc3829897.chain_1207,blat.proc3829897.chain_1209	4
scaffold_11	alt_donor	15833671	15833672	+	asmbl_6114,asmbl_6116	none	STRG.14312.1,STRG.14312.2,blat.proc3829877.chain_2734,blat.proc3829877.chain_2737	4	STRG.14312.3,blat.proc3829877.chain_2735	2
scaffold_5	skipped_exon	12532379	12533784	-	asmbl_45845	none	STRG.6491.2	1	STRG.6491.1,STRG.6491.3	2
scaffold_18	alt_acceptor	8593262	8593263	+	asmbl_20873	none	STRG.21515.3	1	STRG.21515.1,blat.proc3829881.chain_2521	2
scaffold_8	spliced_intron	5857393	5857551	+	asmbl_51896,asmbl_51897,asmbl_51899	none	STRG.9989.1,STRG.9989.3,STRG.9989.4,Trinity_GG_5569_c0_g1_i1,Trinity_GG_5569_c0_g1_i3,Trinity_GG_5569_c0_g1_i4,blat.proc3829875.chain_2500,blat.proc3829875.chain_2501,blat.proc3829875.chain_2502	9	STRG.9989.2,Trinity_GG_5569_c0_g1_i2,blat.proc3829875.chain_2499	3
scaffold_10	ends_in_intron	982588	982588	-	asmbl_2944	none	Trinity_GG_23673_c0_g1_i2,blat.proc3829893.chain_424	2	STRG.11980.1,STRG.11980.2,STRG.11980.3,blat.proc3829893.chain_423	4
scaffold_1	starts_in_intron	5723638	5723638	-	asmbl_292	none	blat.proc3829887.chain_268	1	STRG.377.1,STRG.377.2,blat.proc3829887.chain_266,blat.proc3829887.chain_269	4
scaffold_17	retained_intron	8316944	8317189	+	asmbl_18095	none	STRG.20443.3	1	STRG.20443.1,STRG.20443.2,blat.proc3829881.chain_1250,blat.proc3829881.chain_1251,blat.proc3829881.chain_1253	5
scaffold_1	spliced_intron	3270179	3270373	-	asmbl_143	none	STRG.199.3	1	STRG.199.2,blat.proc3829887.chain_98	2
scaffold_15	spliced_intron	12000050	12000403	-	asmbl_15563,asmbl_15564,asmbl_15566	none	STRG.18630.1,STRG.18630.3,Trinity_GG_27487_c0_g1_i1,Trinity_GG_27487_c0_g1_i3,Trinity_GG_27487_c0_g1_i4,blat.proc3829895.chain_3415,blat.proc3829895.chain_3418,blat.proc3829895.chain_3419	8	blat.proc3829895.chain_3417,blat.proc3829895.chain_3421	2
scaffold_21	retained_intron	5980259	5980363	-	asmbl_27739	none	STRG.24126.2	1	STRG.24126.1,STRG.24126.3	2
scaffold_13	alternate_exon	6138113	6139181	-	asmbl_9733	none	STRG.15904.3,Trinity_GG_25956_c0_g1_i1,blat.proc3829895.chain_670	3	STRG.15904.2	1
scaffold_5	starts_in_intron	965744	965744	-	asmbl_45193	none	Trinity_GG_20192_c0_g1_i4,blat.proc3829889.chain_1742	2	STRG.5638.1,STRG.5638.2,Trinity_GG_20192_c0_g1_i1	3
scaffold_11	alternate_exon	16253633	16253777	+	asmbl_6127	none	STRG.14318.3	1	STRG.14318.2	1
scaffold_3	alt_donor	11660885	11660886	+	asmbl_40325,asmbl_40327,asmbl_40328	none	STRG.3612.1,STRG.3612.3,Trinity_GG_2013_c0_g1_i1,Trinity_GG_2013_c0_g1_i5,blat.proc3829871.chain_3736,blat.proc3829871.chain_3737	6	STRG.3612.2,STRG.3612.4,Trinity_GG_2013_c0_g1_i4,blat.proc3829871.chain_3734,blat.proc3829871.chain_3738	5
scaffold_12	spliced_intron	12341400	12341510	-	asmbl_8006,asmbl_8008	none	STRG.15125.1,blat.proc3829893.chain_3521,blat.proc3829893.chain_3522	3	Trinity_GG_25457_c0_g1_i1,blat.proc3829893.chain_3520	2
scaffold_18	retained_intron	206330	206526	+	asmbl_20301	none	Trinity_GG_11543_c0_g1_i1,blat.proc3829881.chain_1838	2	STRG.20965.1,Trinity_GG_11543_c0_g1_i4,blat.proc3829881.chain_1839,blat.proc3829881.chain_1840,blat.proc3829881.chain_1841,blat.proc3829881.chain_1842,blat.proc3829881.chain_1843	7
scaffold_12	spliced_intron	16338959	16339103	+	asmbl_9125	none	STRG.15376.1,blat.proc3829877.chain_3729	2	blat.proc3829877.chain_3727	1
scaffold_5	ends_in_intron	2552963	2552963	+	asmbl_43844	none	Trinity_GG_3132_c2_g1_i1,blat.proc3829873.chain_1913	2	STRG.5771.1,blat.proc3829873.chain_1909	2
scaffold_11	alt_donor	8096857	8096858	+	asmbl_5686	none	STRG.13810.1,Trinity_GG_7614_c0_g1_i3,blat.proc3829877.chain_2296	3	STRG.13810.2,Trinity_GG_7614_c0_g1_i1,blat.proc3829877.chain_2294	3
scaffold_5	spliced_intron	10170936	10171022	+	asmbl_44331	none	STRG.6310.1,blat.proc3829873.chain_2380	2	blat.proc3829873.chain_2377	1
scaffold_11	starts_in_intron	5503028	5503028	-	asmbl_6643	none	STRG.13608.2	1	STRG.13608.1,blat.proc3829893.chain_2060,blat.proc3829893.chain_2061,blat.proc3829893.chain_2062	4
scaffold_13	retained_exon	366291	366561	-	asmbl_9275	none	STRG.15426.1,Trinity_GG_25666_c0_g1_i11,blat.proc3829895.chain_155	3	STRG.15426.3	1
scaffold_12	alt_donor	14171917	14171918	+	asmbl_9030	none	STRG.15236.2,blat.proc3829877.chain_3706	2	STRG.15236.1,blat.proc3829877.chain_3704,blat.proc3829877.chain_3707,blat.proc3829877.chain_3708	4
scaffold_1	alt_acceptor	3287193	3287194	+	asmbl_1590	none	blat.proc3829871.chain_252	1	STRG.204.1,STRG.204.3,blat.proc3829871.chain_253	3
scaffold_21	retained_intron	2654905	2655051	-	asmbl_27510,asmbl_27513	none	STRG.23889.3,Trinity_GG_30293_c0_g1_i8,blat.proc3829899.chain_909,blat.proc3829899.chain_913	4	STRG.23889.1,STRG.23889.2,STRG.23889.4,Trinity_GG_30293_c0_g1_i10,Trinity_GG_30293_c0_g1_i6,blat.proc3829899.chain_908,blat.proc3829899.chain_910,blat.proc3829899.chain_914,blat.proc3829899.chain_915	9
scaffold_5	alt_acceptor	6587746	6587747	-	asmbl_45491,asmbl_45493,asmbl_45494	none	Trinity_GG_20417_c0_g1_i5,blat.proc3829889.chain_2132,blat.proc3829889.chain_2133,blat.proc3829889.chain_2136	4	blat.proc3829889.chain_2135	1
scaffold_1	alt_acceptor	12049593	12049594	-	asmbl_688,asmbl_689	none	STRG.819.3,STRG.819.4	2	STRG.819.1,STRG.819.2	2
scaffold_6	skipped_exon	14116701	14117085	+	asmbl_47518	none	STRG.8168.1	1	STRG.8168.2	1
scaffold_23	alt_donor	7001682	7001683	-	asmbl_31725	none	STRG.26005.1,blat.proc3829899.chain_3112	2	STRG.26005.2	1
scaffold_21	alt_acceptor	8970188	8970189	-	asmbl_27967,asmbl_27968	none	STRG.24397.3,blat.proc3829899.chain_1461,blat.proc3829899.chain_1462	3	STRG.24397.1,STRG.24397.2,blat.proc3829899.chain_1463,blat.proc3829899.chain_1464	4
scaffold_28	ends_in_intron	2622886	2622886	+	asmbl_38084	none	blat.proc3829885.chain_2522	1	STRG.29418.1,blat.proc3829885.chain_2523	2
scaffold_8	retained_exon	2851101	2851214	-	asmbl_52711	none	STRG.9800.2,blat.proc3829891.chain_1949	2	STRG.9800.1,blat.proc3829891.chain_1947,blat.proc3829891.chain_1948	3
scaffold_10	retained_exon	13285342	13285470	-	asmbl_3774	none	blat.proc3829893.chain_1433	1	STRG.12910.2,blat.proc3829893.chain_1434,blat.proc3829893.chain_1436	3
scaffold_2	starts_in_intron	5375028	5375028	-	asmbl_23170	none	STRG.1946.1	1	STRG.1946.2,STRG.1946.3,blat.proc3829887.chain_1846,blat.proc3829887.chain_1847,blat.proc3829887.chain_1848	5
scaffold_28	ends_in_intron	5579986	5579986	+	asmbl_38293	none	STRG.29670.3	1	STRG.29670.1,STRG.29670.2,Trinity_GG_16454_c0_g1_i4,Trinity_GG_16454_c0_g1_i5,Trinity_GG_16454_c0_g1_i6,blat.proc3829885.chain_2793,blat.proc3829885.chain_2796,blat.proc3829885.chain_2797	8
scaffold_28	alt_acceptor	2907909	2907910	-	asmbl_37424	none	STRG.29464.1	1	STRG.29464.2	1
scaffold_13	alternate_exon	5576344	5576713	-	asmbl_9658	none	STRG.15843.1,blat.proc3829895.chain_586	2	STRG.15843.2,STRG.15843.3,blat.proc3829895.chain_584	3
scaffold_9	ends_in_intron	5665902	5665902	+	asmbl_54051	none	blat.proc3829875.chain_3637	1	STRG.11128.1,blat.proc3829875.chain_3636	2
scaffold_1	alt_acceptor	12068098	12068099	-	asmbl_694	none	STRG.820.1	1	STRG.820.3	1
scaffold_4	ends_in_intron	9251483	9251483	+	asmbl_42939	none	blat.proc3829873.chain_1008	1	STRG.4718.1,STRG.4718.2,blat.proc3829873.chain_1007	3
scaffold_9	spliced_intron	2400442	2400475	-	asmbl_54833	none	STRG.10875.1	1	blat.proc3829891.chain_3016	1
scaffold_5	spliced_intron	19371162	19371247	-	asmbl_46281,asmbl_46283	none	STRG.7028.1,STRG.7028.3,Trinity_GG_20939_c0_g1_i1,blat.proc3829889.chain_3036	4	STRG.7028.2,Trinity_GG_20939_c0_g1_i3,blat.proc3829889.chain_3035	3
scaffold_17	spliced_intron	9454795	9455479	+	asmbl_18207,asmbl_18209,asmbl_18211,asmbl_18212	none	STRG.20557.1,STRG.20557.4,Trinity_GG_11275_c0_g1_i11,Trinity_GG_11275_c0_g1_i3,Trinity_GG_11275_c0_g1_i7,Trinity_GG_11275_c0_g1_i8,blat.proc3829881.chain_1391,blat.proc3829881.chain_1393,blat.proc3829881.chain_1394,blat.proc3829881.chain_1395	10	STRG.20557.2,STRG.20557.3	2
scaffold_4	starts_in_intron	4454254	4454254	+	asmbl_42608	none	Trinity_GG_2435_c0_g1_i1,blat.proc3829873.chain_761	2	STRG.4350.1,STRG.4350.2,blat.proc3829873.chain_763	3
scaffold_15	alt_acceptor	5628133	5628134	-	asmbl_15238,asmbl_15239	none	STRG.18239.1,Trinity_GG_27277_c0_g1_i1,Trinity_GG_27277_c0_g1_i2,blat.proc3829895.chain_3004,blat.proc3829895.chain_3005	5	STRG.18239.2	1
scaffold_27	alt_acceptor	1961753	1961754	+	asmbl_36017,asmbl_36018	none	STRG.28656.2,blat.proc3829885.chain_1692	2	STRG.28656.1,STRG.28656.3,blat.proc3829885.chain_1693,blat.proc3829885.chain_1696	4
scaffold_2	starts_in_intron	6675525	6675525	-	asmbl_23246	none	STRG.2026.2,Trinity_GG_18149_c0_g1_i1,blat.proc3829887.chain_1936	3	STRG.2026.1,STRG.2026.3,Trinity_GG_18149_c0_g1_i3,Trinity_GG_18149_c0_g1_i5,blat.proc3829887.chain_1938,blat.proc3829887.chain_1939	6
scaffold_2	spliced_intron	44017	44055	-	asmbl_22812	none	STRG.1499.2	1	STRG.1499.1	1
scaffold_24	skipped_exon	4280160	4280658	+	asmbl_32191	none	STRG.26568.2,blat.proc3829883.chain_3465	2	STRG.26568.1,blat.proc3829883.chain_3466	2
scaffold_14	alt_acceptor	11760908	11760909	-	asmbl_13514	none	STRG.17517.3,blat.proc3829895.chain_2240	2	STRG.17517.1,STRG.17517.2,blat.proc3829895.chain_2241	3
scaffold_4	alternate_exon	16576852	16577563	+	asmbl_43315	none	STRG.5238.2	1	STRG.5238.1,blat.proc3829873.chain_1499,blat.proc3829873.chain_1500	3
scaffold_28	alt_acceptor	4207219	4207220	+	asmbl_38213	none	STRG.29593.4,blat.proc3829885.chain_2724	2	STRG.29593.1,STRG.29593.5,Trinity_GG_16421_c0_g1_i1,blat.proc3829885.chain_2723	4
scaffold_5	retained_exon	9692756	9692987	+	asmbl_44296	none	STRG.6282.1,blat.proc3829873.chain_2435	2	STRG.6282.2,STRG.6282.3,blat.proc3829873.chain_2436	3
scaffold_27	spliced_intron	2047111	2047352	+	asmbl_36023	none	STRG.28673.1,blat.proc3829885.chain_1707	2	blat.proc3829885.chain_1708	1
scaffold_15	spliced_intron	6793556	6793689	-	asmbl_15274	none	STRG.18288.3	1	STRG.18288.1,blat.proc3829895.chain_3046	2
scaffold_11	alternate_exon	11099882	11104018	-	asmbl_6996	none	STRG.14064.1	1	STRG.14064.2	1
scaffold_15	retained_intron	15188738	15189525	+	asmbl_14674,asmbl_14680,asmbl_14686,asmbl_14689	none	blat.proc3829879.chain_3472,blat.proc3829879.chain_3478,blat.proc3829879.chain_3480,blat.proc3829879.chain_3485,blat.proc3829879.chain_3486	5	STRG.18906.2	1
scaffold_22	ends_in_intron	7376805	7376805	-	asmbl_30155	none	Trinity_GG_30969_c0_g1_i1,blat.proc3829899.chain_2095	2	STRG.25051.1	1
scaffold_13	starts_in_intron	385226	385226	-	asmbl_9300	none	blat.proc3829895.chain_128	1	STRG.15422.1,STRG.15422.2,blat.proc3829895.chain_130,blat.proc3829895.chain_132	4
scaffold_6	alt_donor	7849457	7849458	+	asmbl_47023	none	STRG.7662.1	1	STRG.7662.2	1
scaffold_22	retained_intron	4239789	4240805	-	asmbl_29984	none	blat.proc3829899.chain_1980	1	STRG.24838.3	1
scaffold_10	retained_intron	1445500	1445785	-	asmbl_2972	none	blat.proc3829893.chain_453	1	STRG.12010.1,Trinity_GG_23689_c0_g2_i2,blat.proc3829893.chain_452	3
scaffold_25	skipped_exon	400757	401602	+	asmbl_33319	none	STRG.27066.1,blat.proc3829885.chain_167	2	blat.proc3829885.chain_168	1
scaffold_8	starts_in_intron	8756271	8756271	+	asmbl_52020	none	Trinity_GG_5594_c0_g1_i3,blat.proc3829875.chain_2566	2	STRG.10128.1	1
scaffold_1	alternate_exon	4586220	4586276	+	asmbl_1672	none	STRG.280.1,blat.proc3829871.chain_323	2	blat.proc3829871.chain_324	1
scaffold_10	starts_in_intron	4057872	4057872	-	asmbl_3171	none	blat.proc3829893.chain_708	1	STRG.12237.1,STRG.12237.2,STRG.12237.3,STRG.12237.4,STRG.12237.6,STRG.12237.7,blat.proc3829893.chain_706,blat.proc3829893.chain_707,blat.proc3829893.chain_709,blat.proc3829893.chain_710,blat.proc3829893.chain_711	11
scaffold_9	ends_in_intron	16561469	16561469	-	asmbl_55550,asmbl_55551	none	blat.proc3829893.chain_83,blat.proc3829893.chain_84	2	STRG.11797.1,STRG.11797.4,STRG.11797.5,Trinity_GG_23481_c0_g3_i5,Trinity_GG_23481_c0_g3_i6,blat.proc3829893.chain_85,blat.proc3829893.chain_88	7
scaffold_27	starts_in_intron	4800455	4800455	-	asmbl_36926,asmbl_36927	none	STRG.28890.2,blat.proc3829901.chain_2062	2	STRG.28890.1,Trinity_GG_33190_c0_g1_i2,blat.proc3829901.chain_2061	3
scaffold_15	spliced_intron	4753209	4753331	+	asmbl_14110,asmbl_14111	none	STRG.18176.1,STRG.18176.2,blat.proc3829879.chain_2825,blat.proc3829879.chain_2826	4	Trinity_GG_9981_c0_g1_i1,blat.proc3829879.chain_2827	2
scaffold_17	spliced_intron	9428864	9428984	+	asmbl_18206	none	STRG.20552.1,blat.proc3829881.chain_1376	2	Trinity_GG_11265_c0_g1_i1,blat.proc3829881.chain_1375	2
scaffold_12	ends_in_intron	7169771	7169771	-	asmbl_7687	none	Trinity_GG_25244_c0_g1_i1,blat.proc3829893.chain_3153	2	STRG.14774.1,blat.proc3829893.chain_3154	2
scaffold_1	alt_donor	12175314	12175315	+	asmbl_2172,asmbl_2175	none	STRG.846.3,STRG.846.4,blat.proc3829871.chain_925,blat.proc3829871.chain_927	4	STRG.846.1,STRG.846.2,blat.proc3829871.chain_923,blat.proc3829871.chain_926	4
scaffold_6	starts_in_intron	4316711	4316711	+	asmbl_46823	none	Trinity_GG_4053_c3_g1_i1,blat.proc3829873.chain_3515	2	STRG.7402.1,blat.proc3829873.chain_3510,blat.proc3829873.chain_3512,blat.proc3829873.chain_3514	4
scaffold_10	retained_intron	6077386	6078828	-	asmbl_3340,asmbl_3341,asmbl_3342	none	STRG.12437.2,STRG.12437.3,STRG.12437.5,Trinity_GG_23966_c0_g2_i1,blat.proc3829893.chain_926	5	STRG.12437.1,blat.proc3829893.chain_921	2
scaffold_6	skipped_exon	19115049	19115680	-	asmbl_49235,asmbl_49236	none	STRG.8568.4,STRG.8568.5,Trinity_GG_21904_c0_g1_i4	3	STRG.8568.1,STRG.8568.3,Trinity_GG_21904_c0_g1_i1,Trinity_GG_21904_c0_g1_i3,Trinity_GG_21904_c0_g1_i5,blat.proc3829891.chain_897,blat.proc3829891.chain_898	7
scaffold_23	alternate_exon	5301221	5301282	+	asmbl_30853,asmbl_30856	none	STRG.25887.1,Trinity_GG_14289_c0_g1_i1,Trinity_GG_14289_c0_g1_i3,blat.proc3829883.chain_2769,blat.proc3829883.chain_2771	5	STRG.25887.2,STRG.25887.3,Trinity_GG_14289_c0_g1_i2,Trinity_GG_14289_c0_g1_i4,Trinity_GG_14289_c0_g1_i5,blat.proc3829883.chain_2768,blat.proc3829883.chain_2770,blat.proc3829883.chain_2772	8
scaffold_28	ends_in_intron	5237819	5237819	-	asmbl_37591	none	Trinity_GG_33579_c0_g1_i6,blat.proc3829901.chain_2682	2	STRG.29652.1,STRG.29652.2,blat.proc3829901.chain_2680,blat.proc3829901.chain_2683,blat.proc3829901.chain_2685,blat.proc3829901.chain_2687	6
scaffold_11	alt_acceptor	2203665	2203666	-	asmbl_6460,asmbl_6461	none	STRG.13369.1,STRG.13369.3	2	STRG.13369.2,STRG.13369.4	2
scaffold_5	retained_intron	18758085	18758276	-	asmbl_46250,asmbl_46251	none	blat.proc3829889.chain_2993,blat.proc3829889.chain_2995	2	STRG.6996.1,blat.proc3829889.chain_2994	2
scaffold_8	ends_in_intron	3436342	3436342	+	asmbl_51754	none	Trinity_GG_5464_c0_g1_i1,blat.proc3829875.chain_2308	2	STRG.9832.1,Trinity_GG_5464_c0_g1_i2,blat.proc3829875.chain_2307	3
scaffold_2	alternate_exon	17614275	17614325	+	asmbl_25223	none	blat.proc3829871.chain_2857	1	STRG.2650.2,STRG.2650.3,blat.proc3829871.chain_2856	3
scaffold_13	alt_acceptor	9535183	9535184	-	asmbl_9992	none	STRG.16202.3	1	STRG.16202.1,STRG.16202.2,STRG.16202.4,STRG.16202.5,blat.proc3829895.chain_990,blat.proc3829895.chain_991	6
scaffold_10	alt_acceptor	1976634	1976635	-	asmbl_3004	none	STRG.12040.3	1	STRG.12040.1,blat.proc3829893.chain_494	2
scaffold_11	starts_in_intron	13576508	13576508	-	asmbl_7121	none	blat.proc3829893.chain_2653	1	STRG.14204.1,STRG.14204.2,STRG.14204.3,blat.proc3829893.chain_2652,blat.proc3829893.chain_2654	5
scaffold_6	alt_donor	12999537	12999538	-	asmbl_48800,asmbl_48802	none	STRG.8061.6,Trinity_GG_21547_c0_g1_i18,Trinity_GG_21547_c0_g1_i2,blat.proc3829891.chain_265,blat.proc3829891.chain_267	5	STRG.8061.1,STRG.8061.2,STRG.8061.3,STRG.8061.4,STRG.8061.5,STRG.8061.8,Trinity_GG_21547_c0_g1_i10,Trinity_GG_21547_c0_g1_i7,blat.proc3829891.chain_259,blat.proc3829891.chain_260,blat.proc3829891.chain_262,blat.proc3829891.chain_263,blat.proc3829891.chain_264,blat.proc3829891.chain_269,blat.proc3829891.chain_271,blat.proc3829891.chain_272,blat.proc3829891.chain_273,blat.proc3829891.chain_275	18
scaffold_10	alt_acceptor	8897211	8897212	-	asmbl_3532	none	blat.proc3829893.chain_1125	1	STRG.12629.1,blat.proc3829893.chain_1127,blat.proc3829893.chain_1129,blat.proc3829893.chain_1130,blat.proc3829893.chain_1132,blat.proc3829893.chain_1133,blat.proc3829893.chain_1134	7
scaffold_8	retained_exon	2851268	2851381	-	asmbl_52710,asmbl_52713	none	STRG.9800.1,blat.proc3829891.chain_1947,blat.proc3829891.chain_1948	3	STRG.9800.2,blat.proc3829891.chain_1949	2
scaffold_13	spliced_intron	4254874	4255488	+	asmbl_10750	none	STRG.15730.1,blat.proc3829879.chain_438	2	Trinity_GG_8656_c0_g1_i1,blat.proc3829879.chain_437	2
scaffold_18	retained_intron	7661288	7661516	+	asmbl_20793,asmbl_20794	none	STRG.21461.2,STRG.21461.4	2	STRG.21461.1,STRG.21461.3	2
scaffold_11	alt_acceptor	171670	171671	+	asmbl_5218	none	STRG.13231.2	1	STRG.13231.1,STRG.13231.3,STRG.13231.4,STRG.13231.5	4
scaffold_9	alt_acceptor	10974981	10974982	+	asmbl_54306	none	blat.proc3829877.chain_90	1	STRG.11395.1,Trinity_GG_6317_c0_g1_i2,blat.proc3829877.chain_91	3
scaffold_2	retained_intron	10655085	10655168	+	asmbl_24751	none	STRG.2226.2	1	STRG.2226.1,blat.proc3829871.chain_2318,blat.proc3829871.chain_2320	3
scaffold_1	retained_exon	6126972	6127069	-	asmbl_322,asmbl_323	none	STRG.412.1,STRG.412.2,blat.proc3829887.chain_295	3	blat.proc3829887.chain_298	1
scaffold_10	retained_intron	16475794	16476026	-	asmbl_3908,asmbl_3911	none	STRG.13105.2,Trinity_GG_24363_c0_g1_i1,blat.proc3829893.chain_1614	3	STRG.13105.1,blat.proc3829893.chain_1612	2
scaffold_3	alternate_exon	15574497	15574704	+	asmbl_40530	none	STRG.3845.3,blat.proc3829873.chain_216	2	STRG.3845.1,blat.proc3829873.chain_217,blat.proc3829873.chain_218,blat.proc3829873.chain_219	4
scaffold_2	retained_intron	4788146	4788491	+	asmbl_24405,asmbl_24407	none	STRG.1897.2,STRG.1897.4,blat.proc3829871.chain_1852	3	STRG.1897.1,blat.proc3829871.chain_1854	2
scaffold_26	alt_acceptor	3790231	3790232	+	asmbl_35363	none	STRG.28051.2	1	STRG.28051.1,STRG.28051.4	2
scaffold_19	alt_acceptor	9461271	9461272	+	asmbl_22401	none	STRG.22363.2,blat.proc3829881.chain_3289	2	STRG.22363.1,blat.proc3829881.chain_3288	2
scaffold_9	retained_intron	9706825	9707760	+	asmbl_54211	none	STRG.11336.3,Trinity_GG_6324_c1_g1_i12,blat.proc3829877.chain_113	3	Trinity_GG_6324_c1_g1_i1,blat.proc3829877.chain_111	2
scaffold_20	retained_intron	4562562	4562796	+	asmbl_25749	none	Trinity_GG_12748_c0_g1_i1,blat.proc3829883.chain_232	2	STRG.23121.1,Trinity_GG_12748_c0_g1_i2,blat.proc3829883.chain_231	3
scaffold_2	spliced_intron	4599512	4599633	+	asmbl_24389	none	STRG.1887.1,blat.proc3829871.chain_1860	2	STRG.1887.2	1
scaffold_2	starts_in_intron	5200933	5200933	+	asmbl_24426	none	Trinity_GG_1078_c0_g1_i1,blat.proc3829871.chain_1971	2	STRG.1940.1,STRG.1940.2,Trinity_GG_1078_c0_g1_i2,Trinity_GG_1078_c0_g1_i3,Trinity_GG_1078_c0_g1_i5,blat.proc3829871.chain_1968,blat.proc3829871.chain_1969,blat.proc3829871.chain_1970	8
scaffold_13	alt_donor	8806838	8806839	-	asmbl_9944,asmbl_9946	none	blat.proc3829895.chain_941,blat.proc3829895.chain_944	2	blat.proc3829895.chain_940,blat.proc3829895.chain_942,blat.proc3829895.chain_943	3
scaffold_6	retained_exon	16888019	16888129	-	asmbl_49110	none	STRG.8402.2,Trinity_GG_21814_c0_g1_i5,blat.proc3829891.chain_738	3	STRG.8402.1,Trinity_GG_21814_c0_g1_i2,Trinity_GG_21814_c0_g1_i3,blat.proc3829891.chain_737,blat.proc3829891.chain_740	5
scaffold_15	alternate_exon	1961215	1962522	+	asmbl_13982,asmbl_13983	none	STRG.17971.1,STRG.17971.2	2	blat.proc3829879.chain_2659	1
scaffold_19	spliced_intron	12207952	12208221	+	asmbl_22569	none	STRG.22538.1,Trinity_GG_12469_c0_g1_i1,blat.proc3829881.chain_3486	3	STRG.22538.2,Trinity_GG_12469_c0_g1_i2,Trinity_GG_12469_c0_g1_i3,blat.proc3829881.chain_3483,blat.proc3829881.chain_3485	5
scaffold_4	retained_intron	7090983	7091175	+	asmbl_42793,asmbl_42797	none	STRG.4545.1,STRG.4545.4	2	STRG.4545.2	1
scaffold_7	ends_in_intron	15647882	15647882	+	asmbl_51337	none	blat.proc3829875.chain_2032	1	STRG.9551.1,STRG.9551.2,STRG.9551.3,blat.proc3829875.chain_2030,blat.proc3829875.chain_2033	5
scaffold_14	retained_intron	1614630	1615932	+	asmbl_11803,asmbl_11804,asmbl_11805	none	STRG.16791.1,STRG.16791.2,STRG.16791.3,Trinity_GG_9256_c0_g1_i2,Trinity_GG_9256_c0_g1_i3,Trinity_GG_9256_c0_g1_i5,blat.proc3829879.chain_1536,blat.proc3829879.chain_1537,blat.proc3829879.chain_1538,blat.proc3829879.chain_1539	10	STRG.16791.4	1
scaffold_14	retained_intron	2128876	2129082	-	asmbl_12899	none	Trinity_GG_26440_c0_g1_i7,blat.proc3829895.chain_1528	2	STRG.16822.1,Trinity_GG_26440_c0_g1_i4,Trinity_GG_26440_c0_g1_i9,blat.proc3829895.chain_1527,blat.proc3829895.chain_1529,blat.proc3829895.chain_1530	6
scaffold_19	spliced_intron	13215875	13216174	-	asmbl_21833	none	Trinity_GG_29598_c1_g1_i2,blat.proc3829897.chain_3365	2	STRG.22682.3,Trinity_GG_29598_c1_g1_i10,Trinity_GG_29598_c1_g1_i4,Trinity_GG_29598_c1_g1_i7,blat.proc3829897.chain_3359,blat.proc3829897.chain_3366,blat.proc3829897.chain_3367	7
scaffold_13	alt_donor	9535353	9535354	-	asmbl_9990,asmbl_9991,asmbl_9992,asmbl_9994	none	STRG.16202.1,STRG.16202.3,STRG.16202.4,STRG.16202.5,blat.proc3829895.chain_990,blat.proc3829895.chain_991	6	STRG.16202.2	1
scaffold_19	alternate_exon	13087650	13088543	-	asmbl_21810	none	STRG.22612.1,blat.proc3829897.chain_3376	2	STRG.22612.2	1
scaffold_9	retained_exon	4898610	4898797	+	asmbl_53950	none	STRG.11053.2	1	STRG.11053.1	1
scaffold_1	starts_in_intron	6849122	6849122	-	asmbl_402	none	STRG.482.2	1	STRG.482.1	1
scaffold_4	skipped_exon	19524530	19526703	-	asmbl_42198,asmbl_42199	none	blat.proc3829889.chain_1550,blat.proc3829889.chain_1551	2	STRG.5535.1,blat.proc3829889.chain_1553	2
scaffold_15	spliced_intron	15856548	15857174	+	asmbl_14772,asmbl_14774,asmbl_14777,asmbl_14778,asmbl_14781	none	STRG.18964.2,STRG.18964.4,STRG.18964.6,Trinity_GG_10383_c0_g1_i2,Trinity_GG_10383_c0_g1_i3,Trinity_GG_10383_c0_g1_i8,blat.proc3829879.chain_3539,blat.proc3829879.chain_3541,blat.proc3829879.chain_3542,blat.proc3829879.chain_3544	10	blat.proc3829879.chain_3543,blat.proc3829879.chain_3545	2
scaffold_14	spliced_intron	2573325	2573401	+	asmbl_11850	none	STRG.16851.1,Trinity_GG_9273_c0_g1_i1,blat.proc3829879.chain_1568	3	Trinity_GG_9273_c0_g1_i2,Trinity_GG_9273_c0_g1_i3,blat.proc3829879.chain_1569,blat.proc3829879.chain_1570	4
scaffold_19	spliced_intron	810594	810631	+	asmbl_22013	none	STRG.21852.2	1	STRG.21852.1	1
scaffold_11	alt_donor	8790334	8790335	-	asmbl_6861	none	STRG.13891.3	1	STRG.13891.2,STRG.13891.4	2
scaffold_1	spliced_intron	5543912	5544420	-	asmbl_274	none	STRG.344.1,blat.proc3829887.chain_228	2	Trinity_GG_17203_c0_g1_i1,blat.proc3829887.chain_227	2
scaffold_14	retained_intron	10479149	10479549	+	asmbl_12302	none	STRG.17382.2,blat.proc3829879.chain_2092	2	STRG.17382.1,blat.proc3829879.chain_2095	2
scaffold_6	starts_in_intron	9580409	9580409	-	asmbl_48560	none	blat.proc3829891.chain_56	1	STRG.7801.1,blat.proc3829891.chain_57,blat.proc3829891.chain_58	3
scaffold_2	starts_in_intron	7878269	7878269	+	asmbl_24617	none	Trinity_GG_1183_c0_g1_i4,blat.proc3829871.chain_2178	2	Trinity_GG_1183_c0_g1_i10,Trinity_GG_1183_c0_g1_i16,Trinity_GG_1183_c0_g1_i2,blat.proc3829871.chain_2181,blat.proc3829871.chain_2182,blat.proc3829871.chain_2185	6
scaffold_9	alternate_exon	5662331	5665791	+	asmbl_54049	none	STRG.11128.1,blat.proc3829875.chain_3636	2	blat.proc3829875.chain_3638	1
scaffold_7	spliced_intron	5916762	5917155	-	asmbl_49713,asmbl_49717	none	STRG.8887.3,blat.proc3829891.chain_1164	2	STRG.8887.5,Trinity_GG_22041_c0_g1_i6,blat.proc3829891.chain_1166	3
scaffold_13	alternate_exon	15510179	15511198	+	asmbl_11492	none	STRG.16580.2	1	STRG.16580.4	1
scaffold_11	spliced_intron	13254292	13254374	-	asmbl_7103,asmbl_7106	none	STRG.14183.3,blat.proc3829893.chain_2644	2	STRG.14183.1,blat.proc3829893.chain_2646	2
scaffold_2	alt_donor	19373518	19373519	-	asmbl_23884	none	STRG.2804.1,blat.proc3829887.chain_2630	2	STRG.2804.2,STRG.2804.3,blat.proc3829887.chain_2631,blat.proc3829887.chain_2632	4
scaffold_7	ends_in_intron	3415162	3415162	-	asmbl_49611	none	blat.proc3829891.chain_1124	1	blat.proc3829891.chain_1123	1
scaffold_16	alt_acceptor	814801	814802	-	asmbl_16087	none	STRG.19048.3	1	STRG.19048.1,STRG.19048.2,blat.proc3829895.chain_3750,blat.proc3829897.chain_1	4
scaffold_6	alternate_exon	1746258	1746422	+	asmbl_46684,asmbl_46688	none	STRG.7223.1,Trinity_GG_3928_c0_g1_i1,blat.proc3829873.chain_3274	3	STRG.7223.2,STRG.7223.3,blat.proc3829873.chain_3275	3
scaffold_13	retained_intron	4077097	4077213	+	asmbl_10735,asmbl_10737	none	STRG.15714.1,STRG.15714.2,Trinity_GG_8643_c0_g1_i4,blat.proc3829879.chain_417,blat.proc3829879.chain_419	5	STRG.15714.3,blat.proc3829879.chain_416	2
scaffold_1	retained_intron	11066267	11066373	+	asmbl_2041	none	Trinity_GG_425_c0_g1_i1,blat.proc3829871.chain_735	2	STRG.722.1,Trinity_GG_425_c0_g1_i2,blat.proc3829871.chain_736	3
scaffold_20	alt_acceptor	10096035	10096036	+	asmbl_26078	none	STRG.23539.1,blat.proc3829883.chain_627	2	STRG.23539.2	1
scaffold_22	ends_in_intron	508794	508794	-	asmbl_29856	none	Trinity_GG_30818_c0_g1_i1,blat.proc3829899.chain_1822	2	STRG.24685.2,STRG.24685.3,STRG.24685.4,STRG.24685.5,Trinity_GG_30818_c0_g1_i13,Trinity_GG_30818_c0_g1_i17,Trinity_GG_30818_c0_g1_i19,Trinity_GG_30818_c0_g1_i8,blat.proc3829899.chain_1823,blat.proc3829899.chain_1824,blat.proc3829899.chain_1825,blat.proc3829899.chain_1827,blat.proc3829899.chain_1830,blat.proc3829899.chain_1831,blat.proc3829899.chain_1836	15
scaffold_23	starts_in_intron	1126719	1126719	+	asmbl_30615	none	Trinity_GG_14115_c0_g1_i2,blat.proc3829883.chain_2476	2	STRG.25572.1,STRG.25572.2,blat.proc3829883.chain_2475,blat.proc3829883.chain_2477	4
scaffold_5	spliced_intron	1548461	1548586	-	asmbl_45250	none	STRG.5706.3	1	Trinity_GG_20236_c0_g1_i4,blat.proc3829889.chain_1822,blat.proc3829901.chain_3397,blat.proc3829901.chain_3398	4
scaffold_10	spliced_intron	13787525	13787965	+	asmbl_4890	none	STRG.12969.1	1	STRG.12969.2	1
scaffold_1	starts_in_intron	15880447	15880447	+	asmbl_2433	none	STRG.1112.2	1	STRG.1112.1,Trinity_GG_675_c0_g1_i1,blat.proc3829871.chain_1212	3
scaffold_6	alt_acceptor	10182614	10182615	-	asmbl_48605	none	blat.proc3829891.chain_116	1	STRG.7851.1,STRG.7851.2,blat.proc3829891.chain_117,blat.proc3829891.chain_118	4
scaffold_16	spliced_intron	809774	810034	-	asmbl_16077,asmbl_16078,asmbl_16079,asmbl_16080,asmbl_16081,asmbl_16082	none	STRG.19052.1,STRG.19052.2,STRG.19052.3,STRG.19052.4,blat.proc3829895.chain_3747,blat.proc3829895.chain_3748,blat.proc3829895.chain_3749	7	blat.proc3829895.chain_3746	1
scaffold_23	alternate_exon	4100043	4100716	-	asmbl_31555	none	blat.proc3829899.chain_2935	1	STRG.25802.1,STRG.25802.4,STRG.25802.5	3
scaffold_8	alt_donor	17628749	17628750	-	asmbl_53484	none	STRG.10673.2	1	STRG.10673.1,blat.proc3829891.chain_2835	2
scaffold_28	starts_in_intron	3242581	3242581	+	asmbl_38153	none	STRG.29522.2,blat.proc3829885.chain_2589	2	STRG.29522.1	1
scaffold_12	starts_in_intron	7431608	7431608	+	asmbl_8720	none	Trinity_GG_8184_c0_g2_i1,blat.proc3829877.chain_3307	2	STRG.14810.1,STRG.14810.2,Trinity_GG_8184_c0_g1_i1,blat.proc3829877.chain_3305	4
scaffold_7	spliced_intron	18392945	18393030	-	asmbl_50288,asmbl_50296	none	STRG.9659.1,Trinity_GG_22427_c0_g1_i10,blat.proc3829891.chain_1869,blat.proc3829891.chain_1870	4	Trinity_GG_22427_c0_g1_i8,blat.proc3829891.chain_1872	2
scaffold_3	spliced_intron	5129399	5129745	-	asmbl_38788	none	STRG.3205.3,blat.proc3829887.chain_2932	2	STRG.3205.1,blat.proc3829887.chain_2931	2
scaffold_14	retained_exon	16031969	16032016	+	asmbl_12640	none	STRG.17830.2,blat.proc3829879.chain_2486	2	STRG.17830.1	1
scaffold_7	spliced_intron	18945539	18945573	-	asmbl_50326	none	STRG.9685.3	1	blat.proc3829891.chain_1884	1
scaffold_5	retained_intron	8539438	8539947	-	asmbl_45594,asmbl_45595	none	blat.proc3829889.chain_2247,blat.proc3829889.chain_2249	2	STRG.6191.1,STRG.6191.3,blat.proc3829889.chain_2246,blat.proc3829889.chain_2248,blat.proc3829889.chain_2253	5
scaffold_15	alternate_exon	8591366	8591484	+	asmbl_14281	none	STRG.18395.1,blat.proc3829879.chain_3004	2	STRG.18395.2	1
scaffold_23	starts_in_intron	3594621	3594621	+	asmbl_30751	none	Trinity_GG_14176_c4_g1_i1,blat.proc3829883.chain_2583	2	STRG.25761.2	1
scaffold_12	alternate_exon	4722769	4722841	-	asmbl_7566	none	blat.proc3829893.chain_3003	1	STRG.14636.1	1
scaffold_1	alternate_exon	18339632	18339786	+	asmbl_2539	none	STRG.1291.4,blat.proc3829871.chain_1251	2	STRG.1291.1,STRG.1291.2,STRG.1291.3,blat.proc3829871.chain_1250	4
scaffold_18	skipped_exon	7867463	7867988	+	asmbl_20826	none	STRG.21477.5,blat.proc3829881.chain_2470	2	STRG.21477.1,STRG.21477.2,STRG.21477.3,STRG.21477.6,Trinity_GG_11877_c0_g1_i12,Trinity_GG_11877_c0_g1_i14,Trinity_GG_11877_c0_g1_i7,blat.proc3829881.chain_2468,blat.proc3829881.chain_2469,blat.proc3829881.chain_2471,blat.proc3829881.chain_2474,blat.proc3829881.chain_2475	12
scaffold_21	ends_in_intron	10498212	10498212	-	asmbl_28073	none	Trinity_GG_30713_c0_g1_i3,blat.proc3829899.chain_1646	2	STRG.24504.1,blat.proc3829899.chain_1647,blat.proc3829899.chain_1649,blat.proc3829899.chain_1650	4
scaffold_22	alt_acceptor	485598	485599	+	asmbl_29148,asmbl_29149	none	STRG.24679.1,STRG.24679.3,Trinity_GG_13642_c0_g1_i3,blat.proc3829883.chain_1725,blat.proc3829883.chain_1726	5	STRG.24679.2	1
scaffold_13	alt_donor	6604129	6604130	+	asmbl_10930,asmbl_10931,asmbl_10933,asmbl_10935	none	STRG.15936.1,STRG.15936.2,STRG.15936.3,STRG.15936.4,Trinity_GG_8751_c0_g1_i2,Trinity_GG_8751_c0_g1_i3,blat.proc3829879.chain_614,blat.proc3829879.chain_615,blat.proc3829879.chain_616	9	Trinity_GG_8751_c0_g1_i4,blat.proc3829879.chain_613	2
scaffold_10	retained_intron	4715798	4715969	-	asmbl_3223	none	STRG.12286.3	1	STRG.12286.2	1
scaffold_6	skipped_exon	7515546	7516117	-	asmbl_48434,asmbl_48435,asmbl_48436	none	STRG.7647.1,STRG.7647.2,blat.proc3829889.chain_3680,blat.proc3829889.chain_3681,blat.proc3829889.chain_3684	5	blat.proc3829889.chain_3683	1
scaffold_14	spliced_intron	11945131	11945237	+	asmbl_12388	none	STRG.17520.1,Trinity_GG_9639_c0_g1_i2,blat.proc3829879.chain_2226	3	Trinity_GG_9639_c0_g1_i1,blat.proc3829879.chain_2227	2
scaffold_17	spliced_intron	9004119	9005702	+	asmbl_18180,asmbl_18181	none	STRG.20513.1,STRG.20513.3,blat.proc3829881.chain_1319,blat.proc3829881.chain_1321	4	STRG.20513.2,blat.proc3829881.chain_1320	2
scaffold_9	retained_intron	14817657	14817774	-	asmbl_55459,asmbl_55466	none	STRG.11693.2,Trinity_GG_23432_c0_g1_i6,blat.proc3829893.chain_9	3	STRG.11693.3,STRG.11693.6,blat.proc3829893.chain_6	3
scaffold_1	ends_in_intron	11179849	11179849	+	asmbl_2067	none	Trinity_GG_468_c0_g1_i1,blat.proc3829871.chain_816	2	STRG.743.1,STRG.743.2,STRG.743.3,STRG.743.4,STRG.743.5,blat.proc3829871.chain_815,blat.proc3829871.chain_819,blat.proc3829871.chain_821,blat.proc3829871.chain_822,blat.proc3829871.chain_823,blat.proc3829871.chain_824,blat.proc3829871.chain_825	12
scaffold_8	spliced_intron	18108298	18108429	+	asmbl_52527	none	STRG.10708.3	1	STRG.10708.2,Trinity_GG_5942_c0_g1_i3,blat.proc3829875.chain_3202	3
scaffold_28	starts_in_intron	4209364	4209364	+	asmbl_38220	none	blat.proc3829885.chain_2726	1	STRG.29593.1,STRG.29593.4,STRG.29593.5,STRG.29593.6,blat.proc3829885.chain_2724,blat.proc3829885.chain_2727	6
scaffold_2	alt_donor	4443370	4443371	-	asmbl_23104	none	STRG.1871.2	1	STRG.1871.1,blat.proc3829887.chain_1740	2
scaffold_26	alt_donor	5894719	5894720	-	asmbl_34918	none	STRG.28281.3	1	Trinity_GG_32791_c0_g1_i6,blat.proc3829901.chain_1392	2
scaffold_11	spliced_intron	13094016	13094447	+	asmbl_5999,asmbl_6004,asmbl_6008	none	STRG.14176.4,blat.proc3829877.chain_2669,blat.proc3829877.chain_2675	3	STRG.14176.2,blat.proc3829877.chain_2670,blat.proc3829877.chain_2673,blat.proc3829877.chain_2676,blat.proc3829877.chain_2677	5
scaffold_3	alt_donor	16133663	16133664	-	asmbl_39434	none	STRG.3895.2	1	STRG.3895.1,blat.proc3829887.chain_3709	2
scaffold_24	retained_intron	3328681	3328826	-	asmbl_32805	none	blat.proc3829899.chain_3537	1	STRG.26511.1,blat.proc3829899.chain_3538	2
scaffold_8	skipped_exon	7304586	7307284	-	asmbl_52887	none	STRG.10055.2,blat.proc3829891.chain_2138	2	STRG.10055.1,blat.proc3829891.chain_2137	2
scaffold_11	spliced_intron	9950772	9950860	-	asmbl_6948	none	STRG.14010.1,blat.proc3829893.chain_2418	2	blat.proc3829893.chain_2419	1
scaffold_10	starts_in_intron	4055793	4055793	-	asmbl_3172	none	blat.proc3829893.chain_713	1	STRG.12237.1,STRG.12237.2,STRG.12237.3,STRG.12237.4,STRG.12237.6,STRG.12237.7,blat.proc3829893.chain_712	7
scaffold_14	retained_intron	1094470	1094586	+	asmbl_11776	none	STRG.16756.3,blat.proc3829879.chain_1478	2	STRG.16756.2,blat.proc3829879.chain_1481	2
scaffold_9	retained_intron	12012157	12012204	+	asmbl_54389	none	Trinity_GG_6412_c0_g1_i2,blat.proc3829877.chain_266	2	STRG.11515.1	1
scaffold_13	retained_intron	4254874	4255488	+	asmbl_10749	none	Trinity_GG_8656_c0_g1_i1,blat.proc3829879.chain_437	2	STRG.15730.1,blat.proc3829879.chain_438	2
scaffold_25	alternate_exon	5784978	5785292	+	asmbl_33578	none	Trinity_GG_15145_c0_g1_i5,blat.proc3829885.chain_508	2	STRG.27456.1,STRG.27456.2,STRG.27456.3,blat.proc3829885.chain_505,blat.proc3829885.chain_509	5
scaffold_26	alternate_exon	3783738	3783773	-	asmbl_34777	none	blat.proc3829901.chain_1263	1	STRG.28046.1,blat.proc3829901.chain_1262	2
scaffold_6	alt_acceptor	7515924	7515925	-	asmbl_48432,asmbl_48433	none	STRG.7647.3,STRG.7647.4,Trinity_GG_21346_c0_g1_i3,blat.proc3829889.chain_3682	4	STRG.7647.1,STRG.7647.2,blat.proc3829889.chain_3680,blat.proc3829889.chain_3681,blat.proc3829889.chain_3684	5
scaffold_5	retained_exon	18820190	18820269	+	asmbl_44945	none	STRG.7001.2	1	STRG.7001.1,blat.proc3829873.chain_3138	2
scaffold_2	alternate_exon	4018647	4018803	-	asmbl_23066	none	STRG.1843.2	1	STRG.1843.1,blat.proc3829887.chain_1706	2
scaffold_3	alternate_exon	6036642	6050043	-	asmbl_38837	none	STRG.3255.7	1	STRG.3255.3,Trinity_GG_18799_c2_g2_i1,blat.proc3829887.chain_3061	3
scaffold_12	ends_in_intron	1976064	1976064	-	asmbl_7450	none	blat.proc3829893.chain_2802	1	STRG.14477.1,blat.proc3829893.chain_2800,blat.proc3829893.chain_2801	3
scaffold_6	spliced_intron	2758919	2758962	+	asmbl_46719	none	STRG.7264.4	1	STRG.7264.6,Trinity_GG_3999_c0_g1_i2	2
scaffold_3	alternate_exon	6032281	6035682	-	asmbl_38835	none	STRG.3255.3,Trinity_GG_18799_c2_g2_i1,blat.proc3829887.chain_3061	3	blat.proc3829887.chain_3058	1
scaffold_3	retained_intron	795219	795435	+	asmbl_39768,asmbl_39770	none	STRG.2906.2,Trinity_GG_1645_c0_g1_i4,blat.proc3829871.chain_3073,blat.proc3829871.chain_3075	4	STRG.2906.1,blat.proc3829871.chain_3074	2
scaffold_24	starts_in_intron	8942486	8942486	-	asmbl_33113	none	blat.proc3829901.chain_206	1	STRG.26895.1,blat.proc3829901.chain_205,blat.proc3829901.chain_207	3
scaffold_27	retained_intron	4528661	4528689	+	asmbl_36262,asmbl_36264	none	STRG.28885.1,STRG.28885.2	2	blat.proc3829885.chain_2079	1
scaffold_18	ends_in_intron	6439236	6439236	-	asmbl_19937	none	Trinity_GG_28978_c1_g1_i1,blat.proc3829897.chain_2228	2	STRG.21361.1,blat.proc3829897.chain_2227	2
scaffold_25	spliced_intron	9090794	9090907	+	asmbl_33772,asmbl_33773	none	STRG.27705.2,blat.proc3829885.chain_742	2	STRG.27705.1,blat.proc3829885.chain_743	2
scaffold_18	alt_acceptor	7512003	7512004	-	asmbl_19985	none	STRG.21441.1,blat.proc3829897.chain_2212	2	STRG.21441.2	1
scaffold_14	spliced_intron	13223723	13223984	+	asmbl_12445,asmbl_12447,asmbl_12450,asmbl_12451	none	STRG.17600.1,STRG.17600.3,STRG.17600.4,blat.proc3829879.chain_2202,blat.proc3829879.chain_2203,blat.proc3829879.chain_2205	6	STRG.17600.2,STRG.17600.5,STRG.17600.6,blat.proc3829879.chain_2201	4
scaffold_4	alternate_exon	13763733	13763849	-	asmbl_41749,asmbl_41752	none	STRG.4997.2,STRG.4997.3,blat.proc3829889.chain_1048	3	STRG.4997.1,blat.proc3829889.chain_1049,blat.proc3829889.chain_1050	3
scaffold_7	alt_donor	3336964	3336965	-	asmbl_49600	none	STRG.8726.2,blat.proc3829891.chain_1081	2	STRG.8726.3,blat.proc3829891.chain_1082	2
scaffold_23	spliced_intron	4950206	4950422	+	asmbl_30838	none	Trinity_GG_14281_c0_g1_i2,blat.proc3829883.chain_2756	2	Trinity_GG_14281_c0_g1_i5,blat.proc3829883.chain_2755	2
scaffold_6	skipped_exon	2743934	2744894	-	asmbl_48107	none	STRG.7260.1,Trinity_GG_21072_c0_g1_i1	2	STRG.7260.2,blat.proc3829889.chain_3262	2
scaffold_2	alt_donor	16420871	16420872	-	asmbl_23704,asmbl_23708	none	STRG.2585.3,blat.proc3829887.chain_2410	2	STRG.2585.1,STRG.2585.2,blat.proc3829887.chain_2409,blat.proc3829887.chain_2412	4
scaffold_15	spliced_intron	16366344	16366420	-	asmbl_15846	none	STRG.18980.1,Trinity_GG_27641_c0_g1_i1,blat.proc3829895.chain_3698	3	STRG.18980.2,Trinity_GG_27641_c0_g1_i2,blat.proc3829895.chain_3697	3
scaffold_13	alt_acceptor	4602251	4602252	-	asmbl_9606	none	STRG.15781.1	1	Trinity_GG_25880_c0_g1_i1,blat.proc3829895.chain_530	2
scaffold_3	alt_acceptor	5870708	5870709	+	asmbl_40048	none	STRG.3243.2	1	STRG.3243.1,blat.proc3829871.chain_3319	2
scaffold_25	alt_donor	4454483	4454484	-	asmbl_34172	none	STRG.27358.2	1	STRG.27358.3	1
scaffold_16	alt_donor	1777012	1777013	+	asmbl_16874,asmbl_16875,asmbl_16876	none	STRG.19095.1,STRG.19095.2,STRG.19095.3,Trinity_GG_10467_c0_g1_i1,Trinity_GG_10467_c0_g1_i2,blat.proc3829879.chain_3694,blat.proc3829879.chain_3695	7	Trinity_GG_10467_c0_g1_i3,blat.proc3829879.chain_3696	2
scaffold_26	alternate_exon	5664460	5664621	-	asmbl_34885,asmbl_34886,asmbl_34887,asmbl_34888	none	STRG.28255.1,STRG.28255.2,STRG.28255.3,blat.proc3829901.chain_1436,blat.proc3829901.chain_1439,blat.proc3829901.chain_1443	6	blat.proc3829901.chain_1438,blat.proc3829901.chain_1442	2
scaffold_9	alt_donor	15991359	15991360	-	asmbl_55525	none	STRG.11763.1,blat.proc3829893.chain_141	2	STRG.11763.2	1
scaffold_11	alternate_exon	13382869	13383141	+	asmbl_6032	none	STRG.14189.3	1	STRG.14189.1,STRG.14189.2,blat.proc3829877.chain_2692,blat.proc3829877.chain_2694	4
scaffold_23	retained_intron	245837	246226	-	asmbl_31287	none	Trinity_GG_31285_c0_g1_i2,blat.proc3829899.chain_2630	2	STRG.25528.2,blat.proc3829899.chain_2631	2
scaffold_14	spliced_intron	9272559	9272679	-	asmbl_13342,asmbl_13343,asmbl_13345,asmbl_13346,asmbl_13347,asmbl_13348	none	STRG.17323.1,STRG.17323.2,STRG.17323.4,blat.proc3829895.chain_1994,blat.proc3829895.chain_1995,blat.proc3829895.chain_1996,blat.proc3829895.chain_1997	7	blat.proc3829895.chain_1998	1
scaffold_6	retained_intron	13577498	13577850	-	asmbl_48851	none	STRG.8093.2	1	STRG.8093.4	1
scaffold_3	retained_exon	17366415	17366491	-	asmbl_39494,asmbl_39496,asmbl_39498,asmbl_39500,asmbl_39504	none	STRG.3972.1,blat.proc3829889.chain_22,blat.proc3829889.chain_24,blat.proc3829889.chain_27,blat.proc3829889.chain_29	5	STRG.3972.3,STRG.3972.4,blat.proc3829889.chain_23	3
scaffold_4	spliced_intron	13429478	13429669	+	asmbl_43127,asmbl_43128,asmbl_43129	none	STRG.4980.2,STRG.4980.3,STRG.4980.4	3	STRG.4980.1	1
scaffold_12	alt_acceptor	6526866	6526867	-	asmbl_7673	none	STRG.14739.1,blat.proc3829893.chain_3130	2	STRG.14739.2	1
scaffold_3	alternate_exon	2665385	2665559	+	asmbl_39868,asmbl_39869	none	STRG.3038.3,STRG.3038.4	2	STRG.3038.1,STRG.3038.2,blat.proc3829871.chain_3146	3
scaffold_1	alternate_exon	19006746	19007065	+	asmbl_2560	none	STRG.1322.2	1	STRG.1322.3	1
scaffold_12	retained_intron	6542586	6543063	+	asmbl_8662	none	Trinity_GG_8141_c0_g1_i1,blat.proc3829877.chain_3228	2	STRG.14744.1,STRG.14744.2,Trinity_GG_8141_c0_g1_i2,blat.proc3829877.chain_3229	4
scaffold_8	starts_in_intron	18435598	18435598	+	asmbl_52549	none	Trinity_GG_5935_c0_g1_i1,blat.proc3829875.chain_3191	2	STRG.10734.1,STRG.10734.2,Trinity_GG_5935_c0_g1_i3,blat.proc3829875.chain_3189,blat.proc3829875.chain_3190	5
scaffold_4	alt_acceptor	4420971	4420972	+	asmbl_42596	none	STRG.4339.3	1	STRG.4339.1,STRG.4339.2,Trinity_GG_2416_c0_g1_i2,Trinity_GG_2416_c0_g1_i3,blat.proc3829873.chain_726,blat.proc3829873.chain_727	6
scaffold_23	alternate_exon	7278481	7279164	-	asmbl_31743	none	STRG.26034.4	1	STRG.26034.1,blat.proc3829899.chain_3127	2
scaffold_6	starts_in_intron	2699226	2699226	-	asmbl_48098	none	blat.proc3829889.chain_3258	1	STRG.7262.1,blat.proc3829889.chain_3259	2
scaffold_2	spliced_intron	7469205	7469515	-	asmbl_23283,asmbl_23286	none	STRG.2075.3,STRG.2075.4,Trinity_GG_18127_c0_g1_i18,blat.proc3829887.chain_1893	4	STRG.2075.2,blat.proc3829887.chain_1892,blat.proc3829887.chain_1898	3
scaffold_11	spliced_intron	1809111	1809270	-	asmbl_6424	none	blat.proc3829893.chain_1805	1	STRG.13332.1	1
scaffold_4	alternate_exon	1979986	1980824	+	asmbl_42478	none	STRG.4223.3,Trinity_GG_2353_c1_g1_i1,blat.proc3829873.chain_580	3	STRG.4223.1,STRG.4223.2,blat.proc3829873.chain_579	3
scaffold_8	alternate_exon	12024432	12027187	+	asmbl_52294	none	Trinity_GG_5804_c0_g1_i2,blat.proc3829875.chain_2932	2	STRG.10394.2,blat.proc3829875.chain_2931	2
scaffold_3	alt_donor	8253407	8253408	+	asmbl_40165	none	STRG.3399.1,Trinity_GG_1923_c0_g1_i2,blat.proc3829871.chain_3568	3	STRG.3399.2	1
scaffold_25	ends_in_intron	3690269	3690269	+	asmbl_33449	none	blat.proc3829885.chain_327	1	STRG.27297.1,STRG.27297.3,blat.proc3829885.chain_328	3
scaffold_10	alt_acceptor	13285508	13285509	-	asmbl_3772	none	STRG.12910.4,blat.proc3829893.chain_1435	2	blat.proc3829893.chain_1433	1
scaffold_10	retained_intron	6871848	6872357	-	asmbl_3428	none	blat.proc3829893.chain_997	1	STRG.12505.1,blat.proc3829893.chain_990,blat.proc3829893.chain_991,blat.proc3829893.chain_994,blat.proc3829893.chain_996,blat.proc3829893.chain_998,blat.proc3829893.chain_999	7
scaffold_2	alt_acceptor	20423908	20423909	+	asmbl_25363	none	STRG.2880.2	1	STRG.2880.1,blat.proc3829871.chain_3037	2
scaffold_2	skipped_exon	7782690	7785425	+	asmbl_24609,asmbl_24611,asmbl_24612	none	STRG.2076.4,STRG.2076.7,blat.proc3829871.chain_2202,blat.proc3829871.chain_2207,blat.proc3829871.chain_2213	5	STRG.2076.6	1
scaffold_26	starts_in_intron	7486031	7486031	+	asmbl_35644	none	blat.proc3829885.chain_1380	1	STRG.28365.1,STRG.28365.2	2
scaffold_4	starts_in_intron	12705791	12705791	+	asmbl_43073	none	blat.proc3829873.chain_1200	1	STRG.4912.1,STRG.4912.2,blat.proc3829873.chain_1197,blat.proc3829873.chain_1201	4
scaffold_28	ends_in_intron	9111637	9111637	+	asmbl_38464	none	blat.proc3829885.chain_3021	1	STRG.29939.1,Trinity_GG_16573_c0_g1_i1,blat.proc3829885.chain_3020	3
scaffold_14	ends_in_intron	2299083	2299083	+	asmbl_11829	none	STRG.16832.3,blat.proc3829879.chain_1490	2	STRG.16832.1,STRG.16832.2,blat.proc3829879.chain_1488	3
scaffold_8	alt_donor	11637433	11637434	-	asmbl_53147	none	STRG.10364.1,blat.proc3829891.chain_2493	2	STRG.10364.3	1
scaffold_14	skipped_exon	658583	660368	-	asmbl_12822	none	Trinity_GG_26374_c0_g1_i1,blat.proc3829895.chain_1429	2	STRG.16731.1,Trinity_GG_26374_c0_g1_i3,blat.proc3829895.chain_1428	3
scaffold_20	spliced_intron	8292117	8292345	+	asmbl_25915,asmbl_25916,asmbl_25917,asmbl_25918	none	STRG.23362.2,STRG.23362.3,STRG.23362.4,Trinity_GG_12893_c0_g1_i2,Trinity_GG_12893_c0_g1_i3,blat.proc3829883.chain_458,blat.proc3829883.chain_461	7	STRG.23362.1,Trinity_GG_12893_c0_g1_i4,blat.proc3829883.chain_459,blat.proc3829883.chain_460	4
scaffold_10	alternate_exon	2671671	2671714	+	asmbl_4269	none	STRG.12076.1	1	STRG.12076.2,blat.proc3829877.chain_779	2
scaffold_19	alt_acceptor	623988	623989	-	asmbl_21192,asmbl_21194	none	STRG.21833.1,STRG.21833.3,blat.proc3829897.chain_2601	3	STRG.21833.2	1
scaffold_5	skipped_exon	13244510	13245544	+	asmbl_44541,asmbl_44545	none	STRG.6561.2,STRG.6561.3,blat.proc3829873.chain_2704	3	STRG.6561.1,blat.proc3829873.chain_2703,blat.proc3829873.chain_2706	3
scaffold_25	starts_in_intron	5813714	5813714	-	asmbl_34263	none	blat.proc3829901.chain_772	1	STRG.27454.1,blat.proc3829901.chain_771,blat.proc3829901.chain_773	3
scaffold_3	alt_acceptor	4543356	4543357	+	asmbl_39974	none	STRG.3151.1	1	STRG.3151.2	1
scaffold_8	retained_intron	18084290	18084429	-	asmbl_53512,asmbl_53515,asmbl_53516	none	STRG.10701.2,STRG.10701.3,Trinity_GG_22907_c0_g1_i4,blat.proc3829891.chain_2753	4	STRG.10701.1,Trinity_GG_22907_c0_g1_i1,Trinity_GG_22907_c0_g1_i2,Trinity_GG_22907_c0_g1_i6,blat.proc3829891.chain_2754,blat.proc3829891.chain_2755,blat.proc3829891.chain_2756	7
scaffold_18	retained_intron	8862547	8863588	-	asmbl_20060,asmbl_20062,asmbl_20063,asmbl_20066,asmbl_20067	none	STRG.21541.1,STRG.21541.3,Trinity_GG_29045_c0_g1_i9,blat.proc3829897.chain_2355,blat.proc3829897.chain_2359,blat.proc3829897.chain_2360,blat.proc3829897.chain_2362	7	STRG.21541.2,blat.proc3829897.chain_2356,blat.proc3829897.chain_2358	3
scaffold_24	alt_donor	6018270	6018271	-	asmbl_32911	none	STRG.26642.2	1	STRG.26642.1,blat.proc3829899.chain_3716	2
scaffold_7	spliced_intron	271564	271669	+	asmbl_50425	none	STRG.8586.3	1	STRG.8586.1	1
scaffold_10	spliced_intron	3078017	3078168	+	asmbl_4304	none	STRG.12122.1,blat.proc3829877.chain_757	2	blat.proc3829877.chain_758	1
scaffold_500	alt_donor	1484	1485	+	asmbl_46451	none	blat.proc3829885.chain_3368	1	STRG.30347.1,STRG.30347.2,STRG.30347.3,STRG.30347.4,blat.proc3829885.chain_3366,blat.proc3829885.chain_3369	6
scaffold_3	alt_donor	3251189	3251190	+	asmbl_39897,asmbl_39899,asmbl_39905,asmbl_39906	none	STRG.3087.1,STRG.3087.6,blat.proc3829871.chain_3306,blat.proc3829871.chain_3309	4	STRG.3087.4,STRG.3087.5	2
scaffold_21	retained_intron	7999512	7999684	-	asmbl_27904	none	blat.proc3829899.chain_1429	1	STRG.24325.1,STRG.24325.2,STRG.24325.3,STRG.24325.4,blat.proc3829899.chain_1424,blat.proc3829899.chain_1426,blat.proc3829899.chain_1427,blat.proc3829899.chain_1428	8
scaffold_22	spliced_intron	223722	223962	-	asmbl_29842	none	STRG.24671.3	1	STRG.24671.1,STRG.24671.2,Trinity_GG_30815_c0_g1_i1,Trinity_GG_30815_c0_g1_i5,Trinity_GG_30815_c1_g1_i1,blat.proc3829899.chain_1813,blat.proc3829899.chain_1815,blat.proc3829899.chain_1818	8
scaffold_21	starts_in_intron	6631989	6631989	+	asmbl_28700	none	blat.proc3829883.chain_1332	1	STRG.24173.1,blat.proc3829883.chain_1331	2
scaffold_6	ends_in_intron	14723612	14723612	+	asmbl_47576	none	STRG.8229.1,blat.proc3829875.chain_657	2	blat.proc3829875.chain_658	1
scaffold_3	alt_donor	17345489	17345490	+	asmbl_40631	none	STRG.3962.2	1	STRG.3962.1,blat.proc3829873.chain_361,blat.proc3829873.chain_364	3
scaffold_14	skipped_exon	8007446	8007816	+	asmbl_12170	none	STRG.17203.3	1	STRG.17203.2,blat.proc3829879.chain_1947	2
scaffold_10	ends_in_intron	5202056	5202056	-	asmbl_3265	none	blat.proc3829893.chain_800	1	STRG.12339.1,STRG.12339.2,blat.proc3829893.chain_799,blat.proc3829893.chain_801,blat.proc3829893.chain_802	5
scaffold_11	alt_acceptor	9285059	9285060	+	asmbl_5846	none	STRG.13960.1	1	STRG.13960.2,Trinity_GG_7705_c0_g1_i1,Trinity_GG_7705_c0_g1_i3,blat.proc3829877.chain_2463,blat.proc3829877.chain_2464	5
scaffold_11	alternate_exon	3496300	3497549	+	asmbl_5400,asmbl_5402	none	STRG.13472.2,STRG.13472.4	2	STRG.13472.1	1
scaffold_14	alternate_exon	9500556	9500583	+	asmbl_12269	none	STRG.17327.2	1	STRG.17327.1,Trinity_GG_9540_c1_g1_i2,blat.proc3829879.chain_2059	3
scaffold_7	alternate_exon	1402667	1404032	-	asmbl_49532	none	blat.proc3829891.chain_921,blat.proc3829891.chain_926	2	blat.proc3829891.chain_923	1
scaffold_8	alt_donor	9656020	9656021	+	asmbl_52076,asmbl_52079	none	STRG.10210.2,blat.proc3829875.chain_2728	2	STRG.10210.1,STRG.10210.3,blat.proc3829875.chain_2729,blat.proc3829875.chain_2730	4
scaffold_18	retained_intron	9164378	9164478	+	asmbl_20901	none	Trinity_GG_11895_c0_g1_i1,blat.proc3829881.chain_2506	2	STRG.21548.1,Trinity_GG_11895_c0_g1_i2,Trinity_GG_11895_c0_g1_i3,blat.proc3829881.chain_2505,blat.proc3829881.chain_2507	5
scaffold_9	alt_donor	9688646	9688647	-	asmbl_55200,asmbl_55201	none	STRG.11334.1,STRG.11334.2,blat.proc3829891.chain_3512,blat.proc3829891.chain_3515	4	STRG.11334.3	1
scaffold_13	retained_intron	3810685	3810836	-	asmbl_9548,asmbl_9549	none	blat.proc3829895.chain_410,blat.proc3829895.chain_412	2	STRG.15699.1,blat.proc3829895.chain_408,blat.proc3829895.chain_409	3
scaffold_20	alternate_exon	10696690	10696822	+	asmbl_26138	none	STRG.23588.3,blat.proc3829883.chain_711	2	STRG.23588.1,STRG.23588.2,blat.proc3829883.chain_710	3
scaffold_11	starts_in_intron	854446	854446	+	asmbl_5268	none	STRG.13271.2,blat.proc3829877.chain_1717	2	STRG.13271.1,Trinity_GG_7265_c0_g1_i1,blat.proc3829877.chain_1715,blat.proc3829877.chain_1716,blat.proc3829877.chain_1718	5
scaffold_4	skipped_exon	7316676	7317290	-	asmbl_41445	none	STRG.4569.2	1	STRG.4569.1	1
scaffold_24	retained_intron	9934311	9934385	+	asmbl_32539	none	blat.proc3829885.chain_94	1	STRG.26948.1,blat.proc3829885.chain_93	2
scaffold_26	alt_acceptor	9090035	9090036	-	asmbl_35042	none	STRG.28455.2	1	STRG.28455.1,blat.proc3829901.chain_1604,blat.proc3829901.chain_1605	3
scaffold_17	retained_exon	5072141	5072246	+	asmbl_17931,asmbl_17933,asmbl_17934,asmbl_17936	none	STRG.20221.1,STRG.20221.3,STRG.20221.4,STRG.20221.7,Trinity_GG_11042_c0_g1_i2,blat.proc3829881.chain_969,blat.proc3829881.chain_971	7	STRG.20221.2,STRG.20221.5,STRG.20221.6,Trinity_GG_11042_c0_g1_i3,blat.proc3829881.chain_968,blat.proc3829881.chain_970	6
scaffold_10	alternate_exon	13781834	13782697	-	asmbl_3835	none	STRG.12968.3,blat.proc3829893.chain_1501	2	STRG.12968.2,blat.proc3829893.chain_1502	2
scaffold_24	ends_in_intron	6225020	6225020	-	asmbl_32934,asmbl_32935	none	Trinity_GG_31899_c0_g1_i6,Trinity_GG_31899_c0_g1_i9,blat.proc3829899.chain_3688,blat.proc3829899.chain_3692	4	STRG.26664.1,blat.proc3829899.chain_3686,blat.proc3829899.chain_3687,blat.proc3829899.chain_3690,blat.proc3829899.chain_3693,blat.proc3829899.chain_3695,blat.proc3829899.chain_3696	7
scaffold_1	starts_in_intron	1983329	1983329	-	asmbl_96	none	Trinity_GG_17069_c0_g1_i1,blat.proc3829887.chain_7	2	blat.proc3829887.chain_11,blat.proc3829887.chain_12	2
scaffold_19	ends_in_intron	164644	164644	+	asmbl_21985	none	blat.proc3829881.chain_2832	1	STRG.21818.1,blat.proc3829881.chain_2829,blat.proc3829881.chain_2830	3
scaffold_22	alt_donor	8823814	8823815	+	asmbl_29578	none	STRG.25223.2	1	STRG.25223.4	1
scaffold_23	ends_in_intron	2996160	2996160	-	asmbl_31489	none	Trinity_GG_31418_c1_g1_i1,blat.proc3829899.chain_2873	2	STRG.25729.1,STRG.25729.4,STRG.25729.5	3
scaffold_16	alternate_exon	6094550	6094639	-	asmbl_16312	none	blat.proc3829897.chain_381	1	STRG.19329.1,STRG.19329.2,blat.proc3829897.chain_379,blat.proc3829897.chain_380,blat.proc3829897.chain_382,blat.proc3829897.chain_383,blat.proc3829897.chain_384	7
scaffold_27	retained_exon	1983496	1983703	-	asmbl_36752	none	STRG.28662.1,blat.proc3829901.chain_1854	2	STRG.28662.2,blat.proc3829901.chain_1853	2
scaffold_3	retained_intron	10937352	10937449	-	asmbl_39075,asmbl_39077	none	STRG.3534.1,STRG.3534.4,blat.proc3829887.chain_3294	3	STRG.3534.2,blat.proc3829887.chain_3295	2
scaffold_4	ends_in_intron	4552155	4552155	+	asmbl_42618	none	blat.proc3829873.chain_739	1	STRG.4367.1,STRG.4367.2,STRG.4367.3,blat.proc3829873.chain_736,blat.proc3829873.chain_737,blat.proc3829873.chain_738	6
scaffold_4	alt_donor	17568274	17568275	-	asmbl_42038,asmbl_42040	none	STRG.5346.1,STRG.5346.2	2	STRG.5346.3,STRG.5346.4	2
scaffold_11	alt_acceptor	13252911	13252912	-	asmbl_7104	none	STRG.14183.2,blat.proc3829893.chain_2645	2	blat.proc3829893.chain_2644	1
scaffold_24	starts_in_intron	1435959	1435959	-	asmbl_32721	none	STRG.26377.1	1	STRG.26377.2	1
scaffold_12	retained_intron	16401775	16403321	+	asmbl_9131,asmbl_9132,asmbl_9134,asmbl_9135	none	STRG.15385.1,STRG.15385.2,STRG.15385.3,STRG.15385.6,Trinity_GG_8419_c0_g1_i1,Trinity_GG_8419_c0_g1_i3,Trinity_GG_8419_c0_g1_i5,blat.proc3829877.chain_3733,blat.proc3829877.chain_3734,blat.proc3829877.chain_3737	10	STRG.15385.5,Trinity_GG_8419_c0_g1_i7,blat.proc3829877.chain_3738	3
scaffold_22	retained_exon	7693718	7693776	+	asmbl_29505	none	STRG.25104.1	1	STRG.25104.2,blat.proc3829883.chain_2073	2
scaffold_15	alt_acceptor	15450442	15450443	+	asmbl_14738,asmbl_14744,asmbl_14746,asmbl_14747	none	STRG.18933.1,STRG.18933.2,Trinity_GG_10389_c0_g1_i6,Trinity_GG_10389_c0_g1_i7,blat.proc3829879.chain_3563,blat.proc3829879.chain_3564,blat.proc3829879.chain_3565	7	Trinity_GG_10389_c0_g1_i4,blat.proc3829879.chain_3566	2
scaffold_4	spliced_intron	4095323	4095843	+	asmbl_42545	none	STRG.4313.3,blat.proc3829873.chain_636	2	STRG.4313.2,blat.proc3829873.chain_632,blat.proc3829873.chain_634	3
scaffold_1	spliced_intron	14320593	14320863	+	asmbl_2356,asmbl_2357,asmbl_2359	none	STRG.1024.2,STRG.1024.3,STRG.1024.4,blat.proc3829871.chain_1126,blat.proc3829871.chain_1128,blat.proc3829871.chain_1130	6	blat.proc3829871.chain_1127	1
scaffold_23	alt_donor	6912267	6912268	-	asmbl_31710	none	STRG.25998.1,blat.proc3829899.chain_3044	2	STRG.25998.2,STRG.25998.3,blat.proc3829899.chain_3043	3
scaffold_11	alt_donor	9830658	9830659	+	asmbl_5875	none	blat.proc3829877.chain_2514	1	STRG.13996.2,blat.proc3829877.chain_2508,blat.proc3829877.chain_2512	3
scaffold_11	alt_donor	5258825	5258826	+	asmbl_5521	none	STRG.13602.1	1	STRG.13602.5	1
scaffold_20	skipped_exon	1616379	1619049	-	asmbl_26520,asmbl_26521	none	STRG.22881.2,STRG.22881.4	2	STRG.22881.1,STRG.22881.3	2
scaffold_24	alternate_exon	5935500	5936142	+	asmbl_32277	none	blat.proc3829883.chain_3538	1	STRG.26645.1,blat.proc3829883.chain_3535,blat.proc3829883.chain_3543,blat.proc3829883.chain_3545,blat.proc3829883.chain_3547,blat.proc3829883.chain_3548	6
scaffold_24	spliced_intron	5881520	5881765	-	asmbl_32895,asmbl_32896	none	STRG.26634.1,blat.proc3829899.chain_3709,blat.proc3829899.chain_3710,blat.proc3829899.chain_3711	4	STRG.26634.2,STRG.26634.3,STRG.26634.4,STRG.26634.5,blat.proc3829899.chain_3712,blat.proc3829899.chain_3713	6
scaffold_24	spliced_intron	8954743	8954815	+	asmbl_32466	none	STRG.26896.1,Trinity_GG_14866_c0_g1_i3,blat.proc3829885.chain_27	3	Trinity_GG_14866_c0_g1_i1,blat.proc3829885.chain_25,blat.proc3829885.chain_26	3
scaffold_17	starts_in_intron	8880489	8880489	+	asmbl_18167	none	Trinity_GG_11191_c1_g1_i1,blat.proc3829881.chain_1218	2	STRG.20493.1,blat.proc3829881.chain_1216,blat.proc3829881.chain_1217	3
scaffold_8	alt_donor	8269480	8269481	-	asmbl_52942	none	STRG.10099.2,blat.proc3829891.chain_2270	2	STRG.10099.1,Trinity_GG_22659_c0_g1_i4,blat.proc3829891.chain_2271,blat.proc3829891.chain_2272	4
scaffold_26	alt_donor	3789705	3789706	+	asmbl_35365	none	STRG.28051.1	1	STRG.28051.2,STRG.28051.4	2
scaffold_22	retained_exon	4239310	4239534	-	asmbl_29984	none	blat.proc3829899.chain_1980	1	STRG.24838.2,Trinity_GG_30899_c1_g1_i5,blat.proc3829899.chain_1982	3
scaffold_3	starts_in_intron	6652620	6652620	+	asmbl_40059	none	STRG.3282.3	1	STRG.3282.1,STRG.3282.2,blat.proc3829871.chain_3445	3
scaffold_25	alt_acceptor	9540568	9540569	+	asmbl_33817	none	STRG.27750.2	1	STRG.27750.1,Trinity_GG_15315_c0_g1_i1	2
scaffold_22	spliced_intron	483798	484218	+	asmbl_29149	none	STRG.24679.1	1	STRG.24679.3,Trinity_GG_13642_c0_g1_i3,blat.proc3829883.chain_1726	3
scaffold_8	alt_acceptor	4186034	4186035	+	asmbl_51805	none	blat.proc3829875.chain_2406	1	STRG.9886.1,blat.proc3829875.chain_2409	2
scaffold_1	alt_donor	13929442	13929443	-	asmbl_870	none	STRG.998.2	1	STRG.998.1	1
scaffold_12	ends_in_intron	9667660	9667660	+	asmbl_8834	none	blat.proc3829877.chain_3379	1	STRG.14928.1,STRG.14928.2,Trinity_GG_8223_c0_g1_i2,Trinity_GG_8223_c0_g1_i3,blat.proc3829877.chain_3378,blat.proc3829877.chain_3380	6
scaffold_28	retained_intron	4194207	4194306	-	asmbl_37523	none	blat.proc3829901.chain_2719	1	STRG.29591.2,blat.proc3829901.chain_2718	2
scaffold_10	ends_in_intron	5500520	5500520	+	asmbl_4456	none	blat.proc3829877.chain_999	1	blat.proc3829877.chain_1000	1
scaffold_16	ends_in_intron	11664474	11664474	+	asmbl_17399,asmbl_17400	none	STRG.19673.2,blat.proc3829881.chain_561	2	STRG.19673.1,blat.proc3829881.chain_560	2
scaffold_17	alt_donor	8318266	8318267	+	asmbl_18093,asmbl_18095,asmbl_18096	none	STRG.20443.1,STRG.20443.3,Trinity_GG_11211_c0_g1_i1,blat.proc3829881.chain_1252	4	STRG.20443.2,blat.proc3829881.chain_1250,blat.proc3829881.chain_1251,blat.proc3829881.chain_1253	4
scaffold_4	alternate_exon	19585467	19585629	-	asmbl_42207,asmbl_42208	none	STRG.5543.3,blat.proc3829889.chain_1640	2	STRG.5543.1,STRG.5543.2,blat.proc3829889.chain_1639,blat.proc3829889.chain_1641	4
scaffold_20	alternate_exon	967164	967174	+	asmbl_25552	none	Trinity_GG_12589_c0_g1_i3	1	STRG.22792.2,STRG.22792.3	2
scaffold_8	alt_donor	9947034	9947035	-	asmbl_53078	none	STRG.10238.3,Trinity_GG_22726_c0_g1_i1,blat.proc3829891.chain_2413	3	STRG.10238.1,blat.proc3829891.chain_2414	2
scaffold_27	ends_in_intron	6071615	6071615	+	asmbl_36329	none	Trinity_GG_16041_c0_g1_i1	1	STRG.28987.1,STRG.28987.2,STRG.28987.3,blat.proc3829885.chain_2112,blat.proc3829885.chain_2113	5
scaffold_27	alt_donor	3865964	3865965	+	asmbl_36187	none	STRG.28827.2	1	blat.proc3829885.chain_1969	1
scaffold_9	starts_in_intron	1671583	1671583	-	asmbl_54800	none	blat.proc3829891.chain_2940	1	STRG.10848.1,blat.proc3829891.chain_2939	2
scaffold_2	alt_acceptor	17159790	17159791	+	asmbl_25194	none	STRG.2615.1,blat.proc3829871.chain_2839	2	STRG.2615.2,blat.proc3829871.chain_2838	2
scaffold_22	ends_in_intron	4433999	4433999	-	asmbl_30032	none	Trinity_GG_30894_c1_g1_i1,blat.proc3829899.chain_1968	2	Trinity_GG_30894_c0_g1_i2,blat.proc3829899.chain_1966	2
scaffold_1	spliced_intron	18033265	18033608	-	asmbl_1079,asmbl_1080	none	STRG.1267.2,STRG.1267.3	2	Trinity_GG_17699_c0_g1_i2,Trinity_GG_17699_c0_g1_i5,blat.proc3829887.chain_1166,blat.proc3829887.chain_1167	4
scaffold_5	retained_exon	8132682	8132807	+	asmbl_44191	none	STRG.6170.1,blat.proc3829873.chain_2319	2	STRG.6170.2,blat.proc3829873.chain_2321	2
scaffold_13	alt_acceptor	3154869	3154870	+	asmbl_10649	none	STRG.15609.1,blat.proc3829879.chain_340	2	STRG.15609.2	1
scaffold_13	alternate_exon	364759	365317	-	asmbl_9276	none	STRG.15426.4,Trinity_GG_25666_c0_g1_i10,blat.proc3829895.chain_156	3	STRG.15426.1,STRG.15426.3,STRG.15426.5,Trinity_GG_25666_c0_g1_i1,Trinity_GG_25666_c0_g1_i11,Trinity_GG_25666_c0_g1_i3,blat.proc3829895.chain_155,blat.proc3829895.chain_162,blat.proc3829895.chain_165	9
scaffold_2	alt_acceptor	10645199	10645200	-	asmbl_23445	none	STRG.2223.2	1	STRG.2223.1	1
scaffold_26	retained_intron	2809035	2809204	-	asmbl_34722	none	STRG.27959.1	1	STRG.27959.2	1
scaffold_12	spliced_intron	15048311	15048677	+	asmbl_9069	none	STRG.15289.1,Trinity_GG_8411_c0_g1_i1,blat.proc3829877.chain_3720	3	blat.proc3829877.chain_3721	1
scaffold_4	alt_acceptor	5652384	5652385	-	asmbl_41359	none	blat.proc3829889.chain_613	1	STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_604,blat.proc3829889.chain_606,blat.proc3829889.chain_608,blat.proc3829889.chain_611,blat.proc3829889.chain_612	9
scaffold_10	retained_intron	8916906	8917220	+	asmbl_4619	none	blat.proc3829877.chain_1155	1	STRG.12631.1,STRG.12631.2,blat.proc3829877.chain_1154,blat.proc3829877.chain_1156,blat.proc3829877.chain_1157	5
scaffold_11	spliced_intron	13462735	13462822	-	asmbl_7107,asmbl_7108	none	STRG.14196.1,STRG.14196.2,Trinity_GG_24953_c0_g1_i2,Trinity_GG_24953_c0_g1_i4,blat.proc3829893.chain_2631,blat.proc3829893.chain_2633	6	Trinity_GG_24953_c0_g1_i1,blat.proc3829893.chain_2634	2
scaffold_22	starts_in_intron	4242726	4242726	-	asmbl_29982	none	blat.proc3829899.chain_1984	1	STRG.24838.1,STRG.24838.2,STRG.24838.3,STRG.24838.4,blat.proc3829899.chain_1985	5
scaffold_25	starts_in_intron	9560159	9560159	-	asmbl_34479	none	blat.proc3829901.chain_1038	1	STRG.27753.1,blat.proc3829901.chain_1036,blat.proc3829901.chain_1037	3
scaffold_156	alternate_exon	7018	7196	+	asmbl_15987	none	STRG.30172.2,blat.proc3829885.chain_3226	2	STRG.30172.1,blat.proc3829885.chain_3227	2
scaffold_8	starts_in_intron	9585787	9585787	+	asmbl_52069	none	STRG.10207.3,blat.proc3829875.chain_2709	2	blat.proc3829875.chain_2710,blat.proc3829875.chain_2713	2
scaffold_14	alt_acceptor	9294804	9294805	-	asmbl_13353,asmbl_13358	none	STRG.17324.3,STRG.17324.4,blat.proc3829895.chain_2049	3	STRG.17324.1,STRG.17324.2,blat.proc3829895.chain_2044,blat.proc3829895.chain_2046,blat.proc3829895.chain_2047,blat.proc3829895.chain_2048,blat.proc3829895.chain_2050,blat.proc3829895.chain_2051,blat.proc3829895.chain_2052	9
scaffold_20	alternate_exon	426699	427346	+	asmbl_25508	none	STRG.22729.4,blat.proc3829901.chain_3120	2	STRG.22729.1,STRG.22729.2,STRG.22729.5,Trinity_GG_12572_c0_g1_i1,Trinity_GG_33839_c0_g1_i1,blat.proc3829881.chain_3689	6
scaffold_24	alternate_exon	2962922	2964799	-	asmbl_32796	none	blat.proc3829899.chain_3493	1	STRG.26485.2	1
scaffold_13	alt_donor	8169914	8169915	-	asmbl_9906	none	STRG.16091.2	1	STRG.16091.1,Trinity_GG_26048_c0_g1_i1,blat.proc3829895.chain_865	3
scaffold_11	starts_in_intron	2067089	2067089	-	asmbl_6449	none	STRG.13353.2	1	blat.proc3829893.chain_1838	1
scaffold_23	spliced_intron	10910316	10910432	-	asmbl_31882,asmbl_31884	none	STRG.26273.1,STRG.26273.3	2	STRG.26273.2	1
scaffold_23	retained_exon	7278481	7278967	-	asmbl_31742,asmbl_31744	none	STRG.26034.2,STRG.26034.3	2	STRG.26034.1,blat.proc3829899.chain_3127	2
scaffold_25	retained_intron	5776575	5776928	+	asmbl_33577	none	STRG.27456.1,blat.proc3829885.chain_505	2	STRG.27456.2,blat.proc3829885.chain_510	2
scaffold_2	ends_in_intron	16413748	16413748	-	asmbl_23707	none	blat.proc3829887.chain_2411	1	STRG.2585.1,STRG.2585.2,blat.proc3829887.chain_2409,blat.proc3829887.chain_2410,blat.proc3829887.chain_2412,blat.proc3829887.chain_2413	6
scaffold_10	spliced_intron	8901030	8901211	-	asmbl_3545	none	STRG.12625.1	1	STRG.12625.3	1
scaffold_17	starts_in_intron	10073451	10073451	+	asmbl_18297	none	blat.proc3829881.chain_1449	1	STRG.20614.1,STRG.20614.2,Trinity_GG_11298_c0_g1_i1,Trinity_GG_11298_c0_g1_i2,blat.proc3829881.chain_1450,blat.proc3829881.chain_1451	6
scaffold_13	spliced_intron	6950776	6951100	-	asmbl_9776,asmbl_9777,asmbl_9778,asmbl_9780	none	STRG.15968.2,STRG.15968.3,STRG.15968.5,STRG.15968.6	4	STRG.15968.1,Trinity_GG_25972_c0_g1_i5	2
scaffold_20	starts_in_intron	11567370	11567370	+	asmbl_26229	none	Trinity_GG_13096_c0_g2_i1,blat.proc3829883.chain_794	2	STRG.23649.2	1
scaffold_15	alt_acceptor	5322334	5322335	-	asmbl_15206	none	blat.proc3829895.chain_2925	1	STRG.18211.2,Trinity_GG_27242_c0_g1_i2,blat.proc3829895.chain_2926,blat.proc3829895.chain_2929	4
scaffold_13	retained_intron	4459134	4459215	+	asmbl_10776,asmbl_10779,asmbl_10780,asmbl_10781	none	STRG.15755.3,STRG.15755.4,Trinity_GG_8663_c0_g1_i7,blat.proc3829879.chain_449,blat.proc3829879.chain_453	5	STRG.15755.1,STRG.15755.2,Trinity_GG_8663_c0_g1_i6,blat.proc3829879.chain_448,blat.proc3829879.chain_450,blat.proc3829879.chain_451,blat.proc3829879.chain_452	7
scaffold_26	retained_intron	6351209	6351389	-	asmbl_34955	none	STRG.28315.1	1	Trinity_GG_32794_c0_g1_i3,blat.proc3829901.chain_1405	2
scaffold_24	spliced_intron	4328698	4328844	+	asmbl_32204,asmbl_32205	none	STRG.26581.1,STRG.26581.2	2	blat.proc3829883.chain_3424	1
scaffold_11	starts_in_intron	8078366	8078366	-	asmbl_6801,asmbl_6810	none	Trinity_GG_24711_c0_g1_i19,Trinity_GG_24711_c0_g1_i2,blat.proc3829893.chain_2200,blat.proc3829893.chain_2203	4	STRG.13802.2,STRG.13802.3,STRG.13802.4,STRG.13802.5,Trinity_GG_24711_c0_g1_i13,Trinity_GG_24711_c0_g1_i17,Trinity_GG_24711_c0_g1_i18,Trinity_GG_24711_c0_g1_i3,Trinity_GG_24711_c0_g1_i5,Trinity_GG_24711_c0_g1_i7,Trinity_GG_24711_c0_g1_i8,blat.proc3829893.chain_2197,blat.proc3829893.chain_2198,blat.proc3829893.chain_2201,blat.proc3829893.chain_2204,blat.proc3829893.chain_2205,blat.proc3829893.chain_2206,blat.proc3829893.chain_2208,blat.proc3829893.chain_2209,blat.proc3829893.chain_2210,blat.proc3829893.chain_2211	21
scaffold_28	spliced_intron	5238035	5238122	-	asmbl_37589,asmbl_37591,asmbl_37594	none	STRG.29652.2,Trinity_GG_33579_c0_g1_i6,blat.proc3829901.chain_2682,blat.proc3829901.chain_2683,blat.proc3829901.chain_2685	5	STRG.29652.1,blat.proc3829901.chain_2680,blat.proc3829901.chain_2687	3
scaffold_15	spliced_intron	10766606	10766774	+	asmbl_14405,asmbl_14406,asmbl_14408,asmbl_14409,asmbl_14410	none	STRG.18552.3,STRG.18552.5,blat.proc3829879.chain_3157,blat.proc3829879.chain_3159,blat.proc3829879.chain_3160,blat.proc3829879.chain_3161,blat.proc3829879.chain_3162	7	blat.proc3829879.chain_3163	1
scaffold_3	alt_acceptor	6652986	6652987	+	asmbl_40056,asmbl_40057,asmbl_40058	none	STRG.3282.1,STRG.3282.2,blat.proc3829871.chain_3445	3	STRG.3282.3	1
scaffold_22	alt_acceptor	2963785	2963786	-	asmbl_29922	none	STRG.24770.2	1	STRG.24770.1,blat.proc3829899.chain_1875	2
scaffold_21	alt_acceptor	675557	675558	-	asmbl_27364,asmbl_27365,asmbl_27368,asmbl_27370	none	STRG.23740.1,STRG.23740.2,STRG.23740.4,STRG.23740.5	4	STRG.23740.3,blat.proc3829899.chain_806,blat.proc3829899.chain_807	3
scaffold_1	skipped_exon	12334369	12335043	-	asmbl_716,asmbl_717	none	blat.proc3829887.chain_735,blat.proc3829887.chain_736	2	STRG.843.1,blat.proc3829887.chain_734,blat.proc3829887.chain_744,blat.proc3829887.chain_745	4
scaffold_27	spliced_intron	4799664	4799998	-	asmbl_36925,asmbl_36927	none	STRG.28890.1,STRG.28890.2,Trinity_GG_33190_c0_g1_i2,blat.proc3829901.chain_2061	4	Trinity_GG_33190_c0_g1_i1,blat.proc3829901.chain_2062	2
scaffold_14	starts_in_intron	3591216	3591216	+	asmbl_11933	none	Trinity_GG_9328_c0_g1_i5,blat.proc3829879.chain_1677	2	STRG.16928.1,STRG.16928.2,blat.proc3829879.chain_1675,blat.proc3829879.chain_1676,blat.proc3829879.chain_1678	5
scaffold_19	starts_in_intron	9171575	9171575	+	asmbl_22374	none	Trinity_GG_12315_c1_g1_i1,blat.proc3829881.chain_3211	2	STRG.22339.1	1
scaffold_10	retained_intron	7672393	7673371	+	asmbl_4573	none	STRG.12547.2,Trinity_GG_6909_c0_g1_i1,blat.proc3829877.chain_1107	3	STRG.12547.3	1
scaffold_28	retained_intron	107460	108782	-	asmbl_37215,asmbl_37216,asmbl_37217	none	STRG.29229.2,blat.proc3829901.chain_2341,blat.proc3829901.chain_2343	3	STRG.29229.1,blat.proc3829901.chain_2342	2
scaffold_1	alt_acceptor	6126852	6126853	-	asmbl_322,asmbl_323	none	STRG.412.1,STRG.412.2,blat.proc3829887.chain_295	3	blat.proc3829887.chain_298	1
scaffold_20	spliced_intron	11948625	11948717	-	asmbl_27133,asmbl_27134	none	STRG.23687.2,blat.proc3829899.chain_603	2	STRG.23687.3,blat.proc3829899.chain_604	2
scaffold_15	retained_intron	15409801	15410226	+	asmbl_14720	none	blat.proc3829879.chain_3516	1	STRG.18921.5,blat.proc3829879.chain_3518	2
scaffold_17	ends_in_intron	8620044	8620044	+	asmbl_18131,asmbl_18134,asmbl_18135	none	STRG.20462.1,STRG.20462.3,blat.proc3829881.chain_1267,blat.proc3829881.chain_1268,blat.proc3829881.chain_1270	5	STRG.20462.4,STRG.20462.5,blat.proc3829881.chain_1266,blat.proc3829881.chain_1269,blat.proc3829881.chain_1271	5
scaffold_13	spliced_intron	4462344	4462579	-	asmbl_9594,asmbl_9596	none	STRG.15756.1,STRG.15756.2,blat.proc3829895.chain_504	3	Trinity_GG_25865_c1_g1_i1,blat.proc3829895.chain_503	2
scaffold_7	retained_intron	12386811	12386906	-	asmbl_50019	none	blat.proc3829891.chain_1536	1	STRG.9328.1,blat.proc3829891.chain_1532,blat.proc3829891.chain_1533,blat.proc3829891.chain_1534,blat.proc3829891.chain_1535,blat.proc3829891.chain_1538	6
scaffold_4	alt_acceptor	4112610	4112611	-	asmbl_41224	none	blat.proc3829889.chain_373	1	STRG.4314.1,blat.proc3829889.chain_376	2
scaffold_14	starts_in_intron	3152638	3152638	+	asmbl_11891,asmbl_11892	none	blat.proc3829879.chain_1637,blat.proc3829879.chain_1639	2	STRG.16893.1,STRG.16893.2,STRG.16893.3,blat.proc3829879.chain_1625,blat.proc3829879.chain_1626,blat.proc3829879.chain_1628,blat.proc3829879.chain_1630,blat.proc3829879.chain_1631,blat.proc3829879.chain_1632,blat.proc3829879.chain_1634,blat.proc3829879.chain_1635,blat.proc3829879.chain_1638	12
scaffold_22	starts_in_intron	6841488	6841488	-	asmbl_30104	none	blat.proc3829899.chain_2041	1	blat.proc3829899.chain_2044	1
scaffold_17	alt_donor	10193985	10193986	-	asmbl_19283	none	STRG.20627.2	1	STRG.20627.1,blat.proc3829897.chain_1584	2
scaffold_21	spliced_intron	5980259	5980363	-	asmbl_27738,asmbl_27740	none	STRG.24126.1,STRG.24126.3	2	STRG.24126.2	1
scaffold_13	starts_in_intron	7500523	7500523	-	asmbl_9852	none	Trinity_GG_26030_c2_g1_i1,blat.proc3829895.chain_825	2	STRG.16034.1,STRG.16034.2,STRG.16034.3,STRG.16034.4,STRG.16034.5,blat.proc3829895.chain_815,blat.proc3829895.chain_817,blat.proc3829895.chain_818,blat.proc3829895.chain_823	9
scaffold_17	retained_exon	6204733	6204817	-	asmbl_19017,asmbl_19018	none	STRG.20281.1,Trinity_GG_28414_c0_g1_i1,blat.proc3829897.chain_1239,blat.proc3829897.chain_1240	4	Trinity_GG_28414_c0_g1_i2,blat.proc3829897.chain_1241	2
scaffold_4	alt_acceptor	13431109	13431110	+	asmbl_43127,asmbl_43129	none	STRG.4980.2,STRG.4980.4	2	STRG.4980.1,STRG.4980.3	2
scaffold_12	alternate_exon	4637682	4637710	-	asmbl_7560,asmbl_7562	none	STRG.14634.2,STRG.14634.3	2	STRG.14634.1	1
scaffold_12	alt_acceptor	5463765	5463766	-	asmbl_7631	none	STRG.14690.5	1	STRG.14690.1,STRG.14690.2,STRG.14690.3,STRG.14690.4,blat.proc3829893.chain_3103,blat.proc3829893.chain_3104,blat.proc3829893.chain_3105	7
scaffold_11	ends_in_intron	3518042	3518042	+	asmbl_5405,asmbl_5406	none	blat.proc3829877.chain_1973,blat.proc3829877.chain_1976	2	STRG.13473.4	1
scaffold_2	retained_intron	7240470	7240767	+	asmbl_24583	none	Trinity_GG_1178_c0_g1_i9,blat.proc3829871.chain_2167	2	STRG.2061.1,blat.proc3829871.chain_2164,blat.proc3829871.chain_2165,blat.proc3829871.chain_2166,blat.proc3829871.chain_2168,blat.proc3829871.chain_2169,blat.proc3829871.chain_2170,blat.proc3829871.chain_2171,blat.proc3829871.chain_2172	9
scaffold_12	skipped_exon	9667623	9668731	+	asmbl_8836	none	STRG.14928.1	1	STRG.14928.2,Trinity_GG_8223_c0_g1_i2,Trinity_GG_8223_c0_g1_i3,blat.proc3829877.chain_3378,blat.proc3829877.chain_3380	5
scaffold_18	alt_acceptor	206509	206510	+	asmbl_20299	none	STRG.20965.2,Trinity_GG_11543_c0_g1_i6,blat.proc3829881.chain_1837	3	STRG.20965.1,Trinity_GG_11543_c0_g1_i4,blat.proc3829881.chain_1839,blat.proc3829881.chain_1840,blat.proc3829881.chain_1841,blat.proc3829881.chain_1842,blat.proc3829881.chain_1843	7
scaffold_19	retained_intron	13215875	13216174	-	asmbl_21826,asmbl_21834,asmbl_21835	none	STRG.22682.3,Trinity_GG_29598_c1_g1_i10,Trinity_GG_29598_c1_g1_i4,Trinity_GG_29598_c1_g1_i7,blat.proc3829897.chain_3359,blat.proc3829897.chain_3366,blat.proc3829897.chain_3367	7	Trinity_GG_29598_c1_g1_i2,blat.proc3829897.chain_3365	2
scaffold_23	spliced_intron	3510274	3510858	-	asmbl_31522	none	STRG.25754.2,blat.proc3829899.chain_2895	2	STRG.25754.1,Trinity_GG_31429_c0_g1_i4,blat.proc3829899.chain_2892,blat.proc3829899.chain_2893	4
scaffold_16	spliced_intron	2571074	2571165	+	asmbl_16919	none	STRG.19131.2	1	STRG.19131.1	1
scaffold_3	starts_in_intron	18375422	18375422	-	asmbl_39570	none	blat.proc3829889.chain_110	1	STRG.4042.1,STRG.4042.2,blat.proc3829889.chain_111	3
scaffold_19	alt_acceptor	5637475	5637476	-	asmbl_21391	none	blat.proc3829897.chain_2914	1	blat.proc3829897.chain_2910,blat.proc3829897.chain_2911,blat.proc3829897.chain_2913	3
scaffold_8	alt_acceptor	12906338	12906339	-	asmbl_53249,asmbl_53250	none	STRG.10471.1,STRG.10471.2,blat.proc3829891.chain_2566	3	STRG.10471.3	1
scaffold_21	alt_donor	7461604	7461605	-	asmbl_27840	none	STRG.24260.1	1	STRG.24260.2,blat.proc3829899.chain_1334	2
scaffold_18	spliced_intron	5910191	5910450	+	asmbl_20651	none	STRG.21332.2,blat.proc3829881.chain_2260	2	Trinity_GG_11755_c0_g1_i1,blat.proc3829881.chain_2261	2
scaffold_9	alternate_exon	2507929	2511166	+	asmbl_53823,asmbl_53825	none	STRG.10893.2,blat.proc3829875.chain_3346,blat.proc3829875.chain_3347	3	STRG.10893.1,STRG.10893.3	2
scaffold_17	starts_in_intron	12059966	12059966	-	asmbl_19358	none	blat.proc3829897.chain_1679	1	STRG.20721.1,Trinity_GG_28671_c0_g1_i2,blat.proc3829897.chain_1678	3
scaffold_20	spliced_intron	2079205	2079301	-	asmbl_26557	none	STRG.22932.1,Trinity_GG_29800_c0_g1_i3,blat.proc3829897.chain_3695,blat.proc3829897.chain_3696	4	blat.proc3829897.chain_3694	1
scaffold_10	alternate_exon	770740	770850	+	asmbl_4155	none	STRG.11962.4	1	STRG.11962.2	1
scaffold_10	ends_in_intron	13780237	13780237	+	asmbl_4894	none	blat.proc3829877.chain_1527	1	STRG.12969.1,STRG.12969.2,STRG.12969.3	3
scaffold_9	ends_in_intron	2813101	2813101	-	asmbl_54852	none	blat.proc3829891.chain_3009	1	STRG.10915.1	1
scaffold_10	ends_in_intron	8618059	8618059	-	asmbl_3519	none	Trinity_GG_24062_c0_g1_i2,blat.proc3829893.chain_1114	2	STRG.12601.1	1
scaffold_19	starts_in_intron	12248816	12248816	-	asmbl_21685,asmbl_21686	none	Trinity_GG_29555_c0_g1_i5,Trinity_GG_29555_c0_g1_i8,blat.proc3829897.chain_3244,blat.proc3829897.chain_3245	4	STRG.22540.1,STRG.22540.2,Trinity_GG_29555_c0_g1_i1,Trinity_GG_29555_c0_g1_i2,Trinity_GG_29555_c0_g1_i6,Trinity_GG_29555_c0_g1_i7,blat.proc3829897.chain_3241,blat.proc3829897.chain_3242,blat.proc3829897.chain_3246,blat.proc3829897.chain_3247	10
scaffold_1	alternate_exon	850634	850698	+	asmbl_1418,asmbl_1419	none	STRG.41.3,STRG.41.4	2	STRG.41.1,STRG.41.2,STRG.41.5,Trinity_GG_29_c0_g1_i1,Trinity_GG_29_c0_g1_i2,Trinity_GG_29_c0_g1_i3,blat.proc3829871.chain_50,blat.proc3829871.chain_51,blat.proc3829871.chain_52	9
scaffold_29	retained_intron	56911	57031	+	asmbl_38593	none	STRG.29995.1,Trinity_GG_16607_c1_g1_i1,blat.proc3829885.chain_3069	3	blat.proc3829885.chain_3092	1
scaffold_18	spliced_intron	8400595	8401901	+	asmbl_20857	none	STRG.21503.1,blat.proc3829881.chain_2515	2	blat.proc3829881.chain_2516	1
scaffold_16	alt_acceptor	3706987	3706988	+	asmbl_16938	none	Trinity_GG_10516_c0_g1_i4,blat.proc3829881.chain_34,blat.proc3829881.chain_37	3	STRG.19166.2	1
scaffold_5	alt_donor	9335563	9335564	-	asmbl_45657	none	STRG.6248.1	1	Trinity_GG_20523_c0_g1_i1,blat.proc3829889.chain_2309	2
scaffold_16	skipped_exon	125457	125887	+	asmbl_16788	none	Trinity_GG_10419_c0_g1_i5,blat.proc3829879.chain_3617	2	STRG.18995.1,Trinity_GG_10419_c0_g1_i4,blat.proc3829879.chain_3618	3
scaffold_16	spliced_intron	2386305	2386382	-	asmbl_16136	none	STRG.19122.2	1	STRG.19122.1,blat.proc3829897.chain_139	2
scaffold_15	alt_acceptor	9047431	9047432	-	asmbl_15389	none	STRG.18440.1,blat.proc3829895.chain_3211	2	STRG.18440.2,blat.proc3829895.chain_3212	2
scaffold_21	alt_donor	10121769	10121770	+	asmbl_28873	none	STRG.24462.3	1	STRG.24462.2,blat.proc3829883.chain_1541	2
scaffold_6	ends_in_intron	18018859	18018859	+	asmbl_47743	none	Trinity_GG_4613_c2_g1_i1,blat.proc3829875.chain_789	2	STRG.8481.2,STRG.8481.3,blat.proc3829875.chain_786,blat.proc3829875.chain_787	4
scaffold_16	retained_exon	1779585	1779628	+	asmbl_16875,asmbl_16882	none	STRG.19095.1,blat.proc3829879.chain_3709,blat.proc3829879.chain_3712	3	STRG.19095.3,blat.proc3829879.chain_3708	2
scaffold_2	alternate_exon	862237	862313	+	asmbl_24136	none	STRG.1560.3	1	STRG.1560.1,STRG.1560.2,blat.proc3829871.chain_1607,blat.proc3829871.chain_1609,blat.proc3829871.chain_1611	5
scaffold_17	skipped_exon	791549	793111	+	asmbl_17703	none	blat.proc3829881.chain_713	1	STRG.19917.1,STRG.19917.2	2
scaffold_23	ends_in_intron	7916246	7916246	-	asmbl_31773	none	STRG.26078.5	1	STRG.26078.2,blat.proc3829899.chain_3204	2
scaffold_17	ends_in_intron	11038431	11038431	-	asmbl_19311	none	Trinity_GG_28603_c0_g1_i6,blat.proc3829897.chain_1557	2	STRG.20653.3,STRG.20653.6,blat.proc3829897.chain_1562	3
scaffold_26	retained_intron	9781848	9782129	+	asmbl_35792	none	Trinity_GG_15744_c0_g1_i2,blat.proc3829885.chain_1480	2	STRG.28500.1,Trinity_GG_15744_c0_g1_i1,blat.proc3829885.chain_1481	3
scaffold_22	ends_in_intron	6956714	6956714	-	asmbl_30116,asmbl_30120	none	STRG.25002.5,blat.proc3829899.chain_2085,blat.proc3829899.chain_2086	3	STRG.25002.1,STRG.25002.2,STRG.25002.3	3
scaffold_13	retained_exon	11378132	11378203	-	asmbl_10041,asmbl_10042,asmbl_10044	none	STRG.16287.5,STRG.16287.8,Trinity_GG_26140_c0_g1_i6,Trinity_GG_26140_c0_g1_i9,blat.proc3829895.chain_1029,blat.proc3829895.chain_1031	6	STRG.16287.1,STRG.16287.2,STRG.16287.3,STRG.16287.4,STRG.16287.7,Trinity_GG_26140_c0_g1_i1,Trinity_GG_26140_c0_g1_i11,Trinity_GG_26140_c0_g1_i3,Trinity_GG_26140_c0_g1_i4,Trinity_GG_26140_c0_g1_i5,Trinity_GG_26140_c0_g1_i8,blat.proc3829895.chain_1024,blat.proc3829895.chain_1026,blat.proc3829895.chain_1028,blat.proc3829895.chain_1032,blat.proc3829895.chain_1033,blat.proc3829895.chain_1034	17
scaffold_5	starts_in_intron	13072907	13072907	-	asmbl_45885	none	blat.proc3829889.chain_2602	1	STRG.6527.1,blat.proc3829889.chain_2603	2
scaffold_3	spliced_intron	19885475	19886383	-	asmbl_39616,asmbl_39619	none	STRG.4100.1,STRG.4100.4,Trinity_GG_19264_c1_g1_i1,blat.proc3829889.chain_141	4	STRG.4100.2,Trinity_GG_19264_c1_g1_i2,Trinity_GG_19264_c1_g1_i4,Trinity_GG_19264_c2_g1_i1,blat.proc3829889.chain_142,blat.proc3829889.chain_143,blat.proc3829889.chain_145	7
scaffold_27	spliced_intron	6069445	6069599	+	asmbl_36325,asmbl_36326	none	STRG.28987.2,STRG.28987.3,blat.proc3829885.chain_2119	3	STRG.28987.1,blat.proc3829885.chain_2118	2
scaffold_15	spliced_intron	4500541	4500727	+	asmbl_14090,asmbl_14093,asmbl_14094	none	STRG.18164.1,blat.proc3829879.chain_2736,blat.proc3829879.chain_2737,blat.proc3829879.chain_2738	4	Trinity_GG_9941_c0_g2_i1,blat.proc3829879.chain_2739	2
scaffold_13	alt_donor	10129346	10129347	+	asmbl_11217	none	STRG.16228.1,blat.proc3829879.chain_933	2	blat.proc3829879.chain_934	1
scaffold_20	spliced_intron	8293604	8293726	+	asmbl_25917	none	STRG.23362.3	1	STRG.23362.1,STRG.23362.2,STRG.23362.4,Trinity_GG_12893_c1_g1_i1,blat.proc3829883.chain_462	5
scaffold_15	skipped_exon	8984400	8986848	+	asmbl_14318,asmbl_14319	none	STRG.18435.2,blat.proc3829879.chain_3025	2	STRG.18435.1,blat.proc3829879.chain_3027	2
scaffold_8	alternate_exon	2684018	2690100	+	asmbl_51724	none	STRG.9799.1,blat.proc3829875.chain_2213	2	STRG.9799.3	1
scaffold_22	starts_in_intron	7940485	7940485	+	asmbl_29529	none	Trinity_GG_13920_c0_g2_i1,blat.proc3829883.chain_2196	2	STRG.25129.1	1
scaffold_1	spliced_intron	17724961	17725166	+	asmbl_2512,asmbl_2514,asmbl_2515	none	STRG.1239.1,STRG.1239.2,Trinity_GG_733_c0_g1_i2,Trinity_GG_733_c0_g1_i3,blat.proc3829871.chain_1302,blat.proc3829871.chain_1303	6	Trinity_GG_733_c0_g1_i1,blat.proc3829871.chain_1301	2
scaffold_12	alt_acceptor	7430855	7430856	+	asmbl_8721	none	STRG.14810.2	1	STRG.14810.1,Trinity_GG_8184_c0_g1_i1,Trinity_GG_8184_c0_g1_i2,blat.proc3829877.chain_3305,blat.proc3829877.chain_3306	5
scaffold_2	ends_in_intron	1318932	1318932	+	asmbl_24205	none	blat.proc3829871.chain_1714	1	STRG.1604.1,STRG.1604.2,blat.proc3829871.chain_1713	3
scaffold_2	alternate_exon	8855808	8855883	+	asmbl_24681	none	STRG.2138.3	1	STRG.2138.1,STRG.2138.2,Trinity_GG_1207_c0_g1_i1,Trinity_GG_1207_c0_g1_i2,blat.proc3829871.chain_2245,blat.proc3829871.chain_2246	6
scaffold_23	retained_intron	10894395	10894488	+	asmbl_31178	none	Trinity_GG_14496_c0_g1_i2,blat.proc3829883.chain_3139	2	blat.proc3829883.chain_3138	1
scaffold_2	starts_in_intron	950293	950293	+	asmbl_24191	none	blat.proc3829871.chain_1647	1	STRG.1574.1,STRG.1574.2,STRG.1574.3,blat.proc3829871.chain_1651	4
scaffold_11	retained_intron	13094016	13094447	+	asmbl_5997,asmbl_5998,asmbl_6002,asmbl_6003,asmbl_6005	none	STRG.14176.2,blat.proc3829877.chain_2670,blat.proc3829877.chain_2673,blat.proc3829877.chain_2676,blat.proc3829877.chain_2677	5	STRG.14176.4,blat.proc3829877.chain_2669,blat.proc3829877.chain_2675	3
scaffold_7	starts_in_intron	4887930	4887930	+	asmbl_50637	none	Trinity_GG_4854_c0_g1_i1,blat.proc3829875.chain_1238	2	STRG.8824.1,STRG.8824.2,blat.proc3829875.chain_1239,blat.proc3829875.chain_1240	4
scaffold_15	alt_donor	15355010	15355011	+	asmbl_14708,asmbl_14710,asmbl_14712	none	STRG.18909.3,Trinity_GG_10368_c0_g1_i7,blat.proc3829879.chain_3500,blat.proc3829879.chain_3505	4	STRG.18909.2,blat.proc3829879.chain_3499,blat.proc3829879.chain_3504	3
scaffold_6	ends_in_intron	9823440	9823440	+	asmbl_47178	none	blat.proc3829875.chain_209	1	STRG.7815.1,blat.proc3829875.chain_210	2
scaffold_28	retained_intron	232029	232185	+	asmbl_37950	none	blat.proc3829885.chain_2388	1	STRG.29233.1,STRG.29233.2,STRG.29233.3,blat.proc3829885.chain_2391	4
scaffold_1	alt_acceptor	1042740	1042741	+	asmbl_1450	none	STRG.62.4	1	STRG.62.2,blat.proc3829871.chain_11	2
scaffold_18	starts_in_intron	3608011	3608011	+	asmbl_20486	none	Trinity_GG_11656_c0_g1_i1,Trinity_GG_11656_c0_g1_i2,blat.proc3829881.chain_2053,blat.proc3829881.chain_2054	4	STRG.21167.2	1
scaffold_23	spliced_intron	2126799	2127196	-	asmbl_31409,asmbl_31410	none	STRG.25661.1,Trinity_GG_31355_c0_g1_i1,Trinity_GG_31355_c0_g1_i4,blat.proc3829899.chain_2759,blat.proc3829899.chain_2761	5	STRG.25661.2,Trinity_GG_31355_c0_g1_i2,blat.proc3829899.chain_2760	3
scaffold_1	skipped_exon	18763264	18766130	+	asmbl_2558	none	STRG.1310.1	1	STRG.1310.2,STRG.1310.3	2
scaffold_6	alternate_exon	6468769	6468843	-	asmbl_48394	none	STRG.7560.1	1	STRG.7560.2,Trinity_GG_21260_c0_g1_i1,blat.proc3829889.chain_3566	3
scaffold_13	spliced_intron	537327	537809	-	asmbl_9324,asmbl_9325	none	STRG.15432.2,Trinity_GG_25674_c0_g1_i4,blat.proc3829895.chain_189	3	STRG.15432.1,STRG.15432.3,Trinity_GG_25674_c0_g1_i1,Trinity_GG_25674_c0_g1_i2,blat.proc3829895.chain_187,blat.proc3829895.chain_188	6
scaffold_18	ends_in_intron	7876098	7876098	+	asmbl_20837,asmbl_20838,asmbl_20840	none	STRG.21481.4,blat.proc3829881.chain_2401,blat.proc3829881.chain_2404	3	STRG.21481.1,STRG.21481.2,STRG.21481.3,blat.proc3829881.chain_2402,blat.proc3829881.chain_2403	5
scaffold_12	starts_in_intron	38067	38067	-	asmbl_7403	none	blat.proc3829893.chain_2807	1	STRG.14402.1,blat.proc3829893.chain_2806,blat.proc3829893.chain_2808	3
scaffold_21	spliced_intron	731085	731446	+	asmbl_28312,asmbl_28315,asmbl_28316	none	STRG.23754.1,STRG.23754.2,STRG.23754.4,Trinity_GG_13126_c0_g1_i1,blat.proc3829883.chain_853	5	STRG.23754.3,Trinity_GG_13126_c0_g2_i1,blat.proc3829883.chain_854	3
scaffold_2	skipped_exon	17015412	17016299	-	asmbl_23720,asmbl_23722	none	STRG.2611.2,STRG.2611.3,blat.proc3829887.chain_2414	3	STRG.2611.1,blat.proc3829887.chain_2416	2
scaffold_2	spliced_intron	15267793	15267920	+	asmbl_25029,asmbl_25031	none	STRG.2480.3,blat.proc3829871.chain_2522	2	blat.proc3829871.chain_2517	1
scaffold_4	spliced_intron	4912273	4912392	+	asmbl_42642,asmbl_42646	none	STRG.4386.3,blat.proc3829873.chain_777	2	STRG.4386.1,STRG.4386.2,Trinity_GG_2443_c0_g1_i3,blat.proc3829873.chain_779,blat.proc3829873.chain_780	5
scaffold_19	retained_intron	12208560	12208717	+	asmbl_22568,asmbl_22570	none	STRG.22538.2,Trinity_GG_12469_c0_g1_i3,Trinity_GG_12469_c0_g1_i5,blat.proc3829881.chain_3484,blat.proc3829881.chain_3485	5	STRG.22538.1,STRG.22538.3,Trinity_GG_12469_c0_g1_i1,blat.proc3829881.chain_3486	4
scaffold_6	alt_donor	13126161	13126162	-	asmbl_48815	none	STRG.8062.2,blat.proc3829891.chain_357	2	STRG.8062.1,blat.proc3829891.chain_358	2
scaffold_6	starts_in_intron	13126040	13126040	-	asmbl_48818	none	blat.proc3829891.chain_356	1	STRG.8062.1,STRG.8062.2,blat.proc3829891.chain_357,blat.proc3829891.chain_358	4
scaffold_23	starts_in_intron	2199635	2199635	-	asmbl_31425	none	Trinity_GG_31373_c1_g1_i1,blat.proc3829899.chain_2789	2	STRG.25670.1,STRG.25670.2	2
scaffold_9	spliced_intron	8934348	8934433	+	asmbl_54169	none	STRG.11267.2,blat.proc3829877.chain_43	2	blat.proc3829877.chain_42	1
scaffold_6	spliced_intron	9909894	9910383	+	asmbl_47185	none	STRG.7827.1	1	STRG.7827.3,Trinity_GG_4257_c1_g1_i1,blat.proc3829875.chain_131	3
scaffold_18	spliced_intron	377007	377116	-	asmbl_19610,asmbl_19616	none	STRG.20979.1,blat.proc3829897.chain_1875,blat.proc3829897.chain_1879	3	blat.proc3829897.chain_1876	1
scaffold_9	alt_donor	4901126	4901127	+	asmbl_53953	none	STRG.11054.2	1	STRG.11054.1,blat.proc3829875.chain_3544	2
scaffold_24	alternate_exon	2397234	2397287	-	asmbl_32770	none	STRG.26439.2,blat.proc3829899.chain_3500	2	STRG.26439.1	1
scaffold_25	ends_in_intron	9254469	9254469	+	asmbl_33784	none	blat.proc3829885.chain_754	1	STRG.27718.1,blat.proc3829885.chain_753	2
scaffold_2	starts_in_intron	14014150	14014150	-	asmbl_23572	none	Trinity_GG_18353_c0_g1_i3,blat.proc3829887.chain_2284	2	STRG.2393.1,STRG.2393.2,Trinity_GG_18353_c0_g1_i1,Trinity_GG_18353_c0_g1_i2,blat.proc3829887.chain_2282,blat.proc3829887.chain_2283	6
scaffold_24	alt_acceptor	7350457	7350458	-	asmbl_33017	none	STRG.26770.1,blat.proc3829901.chain_50	2	STRG.26770.2	1
scaffold_1	starts_in_intron	5771446	5771446	+	asmbl_1786	none	STRG.387.3,blat.proc3829871.chain_355	2	STRG.387.1,STRG.387.2,blat.proc3829871.chain_356,blat.proc3829871.chain_357	4
scaffold_13	alternate_exon	11600010	11601576	+	asmbl_11280	none	STRG.16295.3	1	STRG.16295.4,blat.proc3829879.chain_1022	2
scaffold_23	retained_intron	8843715	8843755	+	asmbl_31083	none	STRG.26132.2,blat.proc3829883.chain_3045	2	STRG.26132.1	1
scaffold_3	alternate_exon	18928847	18929356	+	asmbl_40705	none	STRG.4063.5,Trinity_GG_2257_c2_g1_i1,blat.proc3829873.chain_428	3	STRG.4063.1,STRG.4063.2,STRG.4063.3,STRG.4063.4,blat.proc3829873.chain_427	5
scaffold_15	alternate_exon	13312486	13312527	+	asmbl_14568	none	STRG.18754.2,Trinity_GG_10292_c0_g1_i1,blat.proc3829879.chain_3357	3	STRG.18754.1	1
scaffold_2	spliced_intron	7324282	7325889	+	asmbl_24598,asmbl_24599	none	STRG.2062.2,Trinity_GG_1176_c0_g1_i4,blat.proc3829871.chain_2159	3	STRG.2062.1,Trinity_GG_1176_c0_g1_i2,Trinity_GG_1176_c0_g1_i3,blat.proc3829871.chain_2161,blat.proc3829871.chain_2162	5
scaffold_7	retained_intron	2502043	2502163	-	asmbl_49570	none	blat.proc3829891.chain_1016	1	STRG.8677.1,STRG.8677.2,blat.proc3829891.chain_1017	3
scaffold_27	alt_donor	2881786	2881787	+	asmbl_36101	none	STRG.28753.3,blat.proc3829885.chain_1821	2	blat.proc3829885.chain_1819	1
scaffold_25	alternate_exon	443397	443473	+	asmbl_33325	none	STRG.27072.2	1	STRG.27072.1	1
scaffold_20	alt_acceptor	8676934	8676935	+	asmbl_25951	none	STRG.23404.2,blat.proc3829883.chain_484	2	STRG.23404.1,blat.proc3829883.chain_485	2
scaffold_16	alternate_exon	1476996	1477174	+	asmbl_16864	none	STRG.19078.1,blat.proc3829879.chain_3686	2	STRG.19078.2,blat.proc3829879.chain_3687	2
scaffold_14	spliced_intron	8007646	8007816	+	asmbl_12166,asmbl_12169	none	STRG.17203.2,Trinity_GG_9476_c0_g1_i3,blat.proc3829879.chain_1947,blat.proc3829879.chain_1951	4	Trinity_GG_9476_c0_g1_i4,blat.proc3829879.chain_1948	2
scaffold_17	alternate_exon	7121471	7121578	-	asmbl_19088	none	STRG.20366.2	1	STRG.20366.1	1
scaffold_3	retained_intron	6659747	6660509	+	asmbl_40060	none	STRG.3290.3,Trinity_GG_1861_c0_g1_i1,Trinity_GG_1861_c0_g1_i4,blat.proc3829871.chain_3462,blat.proc3829871.chain_3463	5	STRG.3290.1,STRG.3290.2,Trinity_GG_1861_c0_g1_i10,blat.proc3829871.chain_3460,blat.proc3829871.chain_3461,blat.proc3829871.chain_3464,blat.proc3829871.chain_3469,blat.proc3829871.chain_3471	8
scaffold_16	starts_in_intron	416468	416468	-	asmbl_16037	none	blat.proc3829897.chain_83	1	STRG.19021.1	1
scaffold_22	alt_acceptor	494950	494951	-	asmbl_29850	none	STRG.24681.2	1	STRG.24681.1,Trinity_GG_30805_c0_g1_i1,blat.proc3829899.chain_1798	3
scaffold_20	skipped_exon	7801873	7802642	-	asmbl_26842	none	STRG.23314.2	1	STRG.23314.1,blat.proc3829899.chain_368	2
scaffold_10	ends_in_intron	9546951	9546951	+	asmbl_4677	none	blat.proc3829877.chain_1287	1	STRG.12692.1,STRG.12692.2,blat.proc3829877.chain_1283	3
scaffold_28	ends_in_intron	5634414	5634414	-	asmbl_37631,asmbl_37633,asmbl_37636	none	blat.proc3829901.chain_2822,blat.proc3829901.chain_2824,blat.proc3829901.chain_2825	3	blat.proc3829901.chain_2823	1
scaffold_18	alternate_exon	1396647	1403117	-	asmbl_19650,asmbl_19651,asmbl_19655,asmbl_19658	none	STRG.21014.1,STRG.21014.2,STRG.21014.3,blat.proc3829897.chain_1932,blat.proc3829897.chain_1933	5	Trinity_GG_28799_c0_g1_i5,blat.proc3829897.chain_1931,blat.proc3829897.chain_1935,blat.proc3829897.chain_1937	4
scaffold_27	starts_in_intron	2876319	2876319	+	asmbl_36098	none	blat.proc3829885.chain_1832	1	STRG.28749.1,STRG.28749.3,blat.proc3829885.chain_1830,blat.proc3829885.chain_1831	4
scaffold_13	spliced_intron	9254392	9254501	+	asmbl_11170	none	STRG.16172.1,Trinity_GG_8857_c1_g1_i4,blat.proc3829879.chain_848	3	Trinity_GG_8857_c1_g1_i3,blat.proc3829879.chain_847	2
scaffold_4	alt_acceptor	19017964	19017965	-	asmbl_42145	none	STRG.5483.3	1	STRG.5483.2,STRG.5483.4	2
scaffold_7	skipped_exon	18392945	18394646	-	asmbl_50297	none	blat.proc3829891.chain_1873	1	STRG.9659.1,STRG.9659.3,STRG.9659.5,Trinity_GG_22427_c0_g1_i10,Trinity_GG_22427_c0_g1_i11,blat.proc3829891.chain_1868,blat.proc3829891.chain_1869,blat.proc3829891.chain_1870,blat.proc3829891.chain_1875	9
scaffold_14	skipped_exon	7027503	7029081	+	asmbl_12104	none	blat.proc3829879.chain_1903	1	STRG.17126.1,Trinity_GG_9449_c0_g1_i5,blat.proc3829879.chain_1904,blat.proc3829879.chain_1905	4
scaffold_28	retained_intron	2199318	2199412	+	asmbl_38043	none	STRG.29369.1,blat.proc3829885.chain_2468,blat.proc3829885.chain_2469	3	STRG.29369.2,STRG.29369.3,blat.proc3829885.chain_2470	3
scaffold_4	alternate_exon	16804606	16804704	-	asmbl_41965	none	STRG.5267.2	1	STRG.5267.1,Trinity_GG_19912_c0_g1_i4,blat.proc3829889.chain_1242,blat.proc3829889.chain_1243	4
scaffold_15	spliced_intron	14663241	14663825	+	asmbl_14644	none	STRG.18874.3	1	Trinity_GG_10354_c0_g1_i2,Trinity_GG_10354_c1_g1_i1,blat.proc3829879.chain_3458,blat.proc3829879.chain_3461	4
scaffold_7	spliced_intron	9312366	9312531	+	asmbl_50958,asmbl_50960	none	STRG.9133.1,Trinity_GG_5081_c0_g1_i1,blat.proc3829875.chain_1610,blat.proc3829875.chain_1611	4	Trinity_GG_5081_c0_g1_i2,blat.proc3829875.chain_1612	2
scaffold_2	ends_in_intron	6436262	6436262	+	asmbl_24490	none	Trinity_GG_1128_c0_g1_i2,blat.proc3829871.chain_2058	2	STRG.2008.1,Trinity_GG_1128_c0_g1_i1,blat.proc3829871.chain_2059	3
scaffold_2	alt_acceptor	5717668	5717669	+	asmbl_24458,asmbl_24459	none	STRG.1962.2,STRG.1962.3,blat.proc3829871.chain_1938	3	STRG.1962.1,Trinity_GG_1056_c0_g1_i2,blat.proc3829871.chain_1939	3
scaffold_9	starts_in_intron	13279457	13279457	+	asmbl_54474	none	STRG.11615.4	1	STRG.11615.1,STRG.11615.2,STRG.11615.3,blat.proc3829877.chain_402,blat.proc3829877.chain_403	5
scaffold_2	alternate_exon	7470021	7470198	-	asmbl_23290	none	blat.proc3829887.chain_1896	1	STRG.2075.3,Trinity_GG_18127_c0_g1_i18,Trinity_GG_18127_c0_g1_i8,blat.proc3829887.chain_1893,blat.proc3829887.chain_1895	5
scaffold_7	spliced_intron	9833548	9833658	-	asmbl_49892,asmbl_49893	none	STRG.9171.3,blat.proc3829891.chain_1399	2	STRG.9171.1,STRG.9171.2,blat.proc3829891.chain_1397,blat.proc3829891.chain_1398	4
scaffold_15	starts_in_intron	15447870	15447870	+	asmbl_14741	none	Trinity_GG_10389_c0_g1_i1,blat.proc3829879.chain_3562	2	STRG.18933.1,STRG.18933.2,Trinity_GG_10389_c0_g1_i2,Trinity_GG_10389_c0_g1_i3,Trinity_GG_10389_c0_g1_i7,blat.proc3829879.chain_3560,blat.proc3829879.chain_3561,blat.proc3829879.chain_3564,blat.proc3829879.chain_3565	9
scaffold_19	spliced_intron	11483479	11483614	-	asmbl_21623,asmbl_21624	none	blat.proc3829897.chain_3187,blat.proc3829897.chain_3192	2	STRG.22477.1,blat.proc3829897.chain_3181,blat.proc3829897.chain_3193	3
scaffold_9	alt_acceptor	15589901	15589902	+	asmbl_54554,asmbl_54556	none	STRG.11739.1,blat.proc3829877.chain_496,blat.proc3829877.chain_497	3	blat.proc3829877.chain_500	1
scaffold_21	retained_intron	4099856	4100642	+	asmbl_28525	none	STRG.23984.3,blat.proc3829883.chain_1158	2	STRG.23984.4	1
scaffold_23	spliced_intron	4449754	4450584	-	asmbl_31587	none	STRG.25842.1,Trinity_GG_31473_c0_g1_i4,blat.proc3829899.chain_2971	3	STRG.25842.4,Trinity_GG_31473_c0_g1_i2,Trinity_GG_31473_c0_g1_i5,Trinity_GG_31473_c0_g1_i6,blat.proc3829899.chain_2967,blat.proc3829899.chain_2968,blat.proc3829899.chain_2969	7
scaffold_12	ends_in_intron	5565431	5565431	-	asmbl_7637	none	blat.proc3829893.chain_3118	1	STRG.14699.1,STRG.14699.2,blat.proc3829893.chain_3115,blat.proc3829893.chain_3116	4
scaffold_19	starts_in_intron	2780749	2780749	+	asmbl_22079	none	Trinity_GG_12146_c0_g1_i7,blat.proc3829881.chain_2910	2	STRG.21950.2,STRG.21950.4,STRG.21950.5	3
scaffold_3	spliced_intron	14187141	14189176	-	asmbl_39277	none	STRG.3759.5	1	STRG.3759.1,STRG.3759.3,STRG.3759.4,Trinity_GG_19089_c0_g1_i1,blat.proc3829887.chain_3545	5
scaffold_12	starts_in_intron	4291653	4291653	-	asmbl_7520	none	STRG.14591.2	1	STRG.14591.1,blat.proc3829893.chain_2884,blat.proc3829893.chain_2885	3
scaffold_13	alternate_exon	6299902	6306697	-	asmbl_9737	none	STRG.15911.1,blat.proc3829895.chain_685	2	blat.proc3829895.chain_684	1
scaffold_1	alternate_exon	3506126	3506169	-	asmbl_147,asmbl_158	none	STRG.217.2,STRG.217.3	2	STRG.217.1,blat.proc3829887.chain_114,blat.proc3829887.chain_119,blat.proc3829887.chain_121,blat.proc3829887.chain_123	5
scaffold_5	skipped_exon	17192140	17194833	+	asmbl_44804	none	STRG.6883.1	1	STRG.6883.2	1
scaffold_506	spliced_intron	2749	3028	+	asmbl_46456	none	STRG.30329.2,blat.proc3829885.chain_3372	2	blat.proc3829885.chain_3371	1
scaffold_13	retained_intron	8237557	8237860	-	asmbl_9919	none	blat.proc3829895.chain_899	1	STRG.16101.1,blat.proc3829895.chain_898,blat.proc3829895.chain_901	3
scaffold_9	alt_acceptor	5567337	5567338	-	asmbl_54979	none	STRG.11115.1	1	STRG.11115.2	1
scaffold_16	spliced_intron	718051	718139	+	asmbl_16832	none	STRG.19042.1,blat.proc3829879.chain_3600	2	blat.proc3829879.chain_3599	1
scaffold_10	spliced_intron	9074945	9075599	+	asmbl_4642	none	STRG.12648.2	1	STRG.12648.1,blat.proc3829877.chain_1223,blat.proc3829877.chain_1224	3
scaffold_2	skipped_exon	17714460	17715722	-	asmbl_23755,asmbl_23758	none	STRG.2670.4,blat.proc3829887.chain_2449,blat.proc3829887.chain_2451	3	STRG.2670.1,STRG.2670.2,blat.proc3829887.chain_2448,blat.proc3829887.chain_2450	4
scaffold_17	ends_in_intron	8219435	8219435	+	asmbl_18079	none	Trinity_GG_11183_c0_g3_i1,blat.proc3829881.chain_1205	2	blat.proc3829881.chain_1196	1
scaffold_3	starts_in_intron	11522754	11522754	+	asmbl_40312,asmbl_40313	none	Trinity_GG_1986_c0_g1_i3,Trinity_GG_1986_c0_g1_i4,blat.proc3829871.chain_3682,blat.proc3829871.chain_3685	4	STRG.3580.1,STRG.3580.2,blat.proc3829871.chain_3683,blat.proc3829871.chain_3684	4
scaffold_13	retained_exon	11380238	11380872	-	asmbl_10052	none	STRG.16287.1,blat.proc3829895.chain_1034	2	STRG.16287.2,STRG.16287.7,Trinity_GG_26140_c0_g1_i4,Trinity_GG_26140_c0_g1_i5,blat.proc3829895.chain_1024,blat.proc3829895.chain_1026	6
scaffold_8	retained_exon	16505854	16506689	-	asmbl_53420,asmbl_53421,asmbl_53423,asmbl_53425,asmbl_53427,asmbl_53429,asmbl_53430	none	STRG.10621.1,STRG.10621.3,STRG.10621.4,blat.proc3829891.chain_2859,blat.proc3829891.chain_2862,blat.proc3829891.chain_2865,blat.proc3829891.chain_2871	7	STRG.10621.5,blat.proc3829891.chain_2860,blat.proc3829891.chain_2864,blat.proc3829891.chain_2869	4
scaffold_5	starts_in_intron	19371555	19371555	-	asmbl_46280,asmbl_46283	none	STRG.7028.2,STRG.7028.3,Trinity_GG_20939_c0_g1_i3,blat.proc3829889.chain_3035	4	STRG.7028.1,Trinity_GG_20939_c0_g1_i1,blat.proc3829889.chain_3036	3
scaffold_3	alt_donor	14432407	14432408	-	asmbl_39322	none	STRG.3781.3	1	STRG.3781.1,STRG.3781.2,Trinity_GG_19066_c0_g1_i3,Trinity_GG_19066_c0_g1_i4,blat.proc3829887.chain_3506,blat.proc3829887.chain_3507	6
scaffold_1	alt_donor	5207359	5207360	+	asmbl_1702,asmbl_1707,asmbl_1709,asmbl_1712	none	STRG.323.1,STRG.323.2,blat.proc3829871.chain_390,blat.proc3829871.chain_392,blat.proc3829871.chain_394	5	STRG.323.3,blat.proc3829871.chain_391	2
scaffold_1	spliced_intron	14521611	14522141	-	asmbl_935,asmbl_937	none	STRG.1047.1,blat.proc3829887.chain_956,blat.proc3829887.chain_957	3	STRG.1047.2,Trinity_GG_17569_c0_g1_i1,blat.proc3829887.chain_954,blat.proc3829887.chain_955	4
scaffold_7	alt_donor	8318941	8318942	-	asmbl_49810,asmbl_49817	none	STRG.9058.4,blat.proc3829891.chain_1323	2	blat.proc3829891.chain_1324	1
scaffold_17	skipped_exon	8355060	8355515	+	asmbl_18114	none	STRG.20446.1,Trinity_GG_11203_c0_g1_i1,blat.proc3829881.chain_1234	3	STRG.20446.2,blat.proc3829881.chain_1236	2
scaffold_14	spliced_intron	6283532	6283649	+	asmbl_12034,asmbl_12035,asmbl_12039	none	STRG.17063.1,STRG.17063.2,STRG.17063.7,blat.proc3829879.chain_1739,blat.proc3829879.chain_1740,blat.proc3829879.chain_1742,blat.proc3829879.chain_1744,blat.proc3829879.chain_1746	8	STRG.17063.3,STRG.17063.4,STRG.17063.5,STRG.17063.6,blat.proc3829879.chain_1743	5
scaffold_12	alt_donor	14903754	14903755	+	asmbl_9061	none	STRG.15267.1,blat.proc3829877.chain_3652	2	STRG.15267.2,blat.proc3829877.chain_3651	2
scaffold_5	alt_acceptor	15547175	15547176	-	asmbl_46080	none	STRG.6737.3	1	STRG.6737.1,STRG.6737.2,blat.proc3829889.chain_2776	3
scaffold_4	alt_acceptor	14590821	14590822	-	asmbl_41799	none	STRG.5078.1,blat.proc3829889.chain_1111	2	STRG.5078.2,STRG.5078.3,blat.proc3829889.chain_1112	3
scaffold_12	retained_exon	7541007	7541102	-	asmbl_7723	none	STRG.14821.2,blat.proc3829893.chain_3241	2	STRG.14821.1,blat.proc3829893.chain_3242	2
scaffold_2	ends_in_intron	10598973	10598973	+	asmbl_24745	none	blat.proc3829871.chain_2308	1	STRG.2220.1,blat.proc3829871.chain_2307	2
scaffold_17	alt_donor	2432802	2432803	+	asmbl_17780,asmbl_17781	none	STRG.20019.1,STRG.20019.2,Trinity_GG_10968_c0_g1_i2,Trinity_GG_10968_c0_g1_i4,blat.proc3829881.chain_846,blat.proc3829881.chain_848	6	STRG.20019.3,STRG.20019.4	2
scaffold_9	alternate_exon	9870462	9871452	-	asmbl_55207	none	STRG.11345.4,Trinity_GG_23302_c2_g1_i1,blat.proc3829891.chain_3521,blat.proc3829891.chain_3524	4	STRG.11345.1,Trinity_GG_23302_c0_g1_i4,blat.proc3829891.chain_3522	3
scaffold_11	alt_donor	13035574	13035575	-	asmbl_7097	none	STRG.14169.2	1	STRG.14169.1,blat.proc3829893.chain_2575,blat.proc3829893.chain_2577	3
scaffold_2	alt_acceptor	3991127	3991128	+	asmbl_24344	none	STRG.1835.3	1	STRG.1835.1	1
scaffold_13	alt_acceptor	909745	909746	-	asmbl_9340,asmbl_9341,asmbl_9342,asmbl_9344	none	STRG.15448.1,STRG.15448.3,STRG.15448.5,blat.proc3829895.chain_212,blat.proc3829895.chain_213,blat.proc3829895.chain_214,blat.proc3829895.chain_215	7	STRG.15448.4,STRG.15448.6	2
scaffold_9	spliced_intron	4160412	4160541	-	asmbl_54919	none	STRG.11008.1,blat.proc3829891.chain_3182	2	blat.proc3829891.chain_3183	1
scaffold_13	spliced_intron	2272879	2273221	-	asmbl_9399,asmbl_9400,asmbl_9401,asmbl_9402,asmbl_9406	none	STRG.15533.1,STRG.15533.2,STRG.15533.3,Trinity_GG_25734_c0_g1_i5,blat.proc3829895.chain_309,blat.proc3829895.chain_311,blat.proc3829895.chain_312,blat.proc3829895.chain_313,blat.proc3829895.chain_316	9	blat.proc3829895.chain_308,blat.proc3829895.chain_310,blat.proc3829895.chain_317	3
scaffold_359	alt_donor	2430	2431	+	asmbl_41000	none	blat.proc3829885.chain_3321	1	STRG.30277.1	1
scaffold_22	ends_in_intron	1006835	1006835	+	asmbl_29206	none	STRG.24742.3,Trinity_GG_13691_c0_g1_i10,blat.proc3829883.chain_1812	3	STRG.24742.2,STRG.24742.4,blat.proc3829883.chain_1807,blat.proc3829883.chain_1808,blat.proc3829883.chain_1809,blat.proc3829883.chain_1810	6
scaffold_11	alt_donor	12892155	12892156	+	asmbl_5993	none	STRG.14159.2,blat.proc3829877.chain_2606	2	STRG.14159.1,blat.proc3829877.chain_2607	2
scaffold_19	alt_acceptor	11472684	11472685	-	asmbl_21604,asmbl_21605	none	STRG.22470.2,STRG.22470.4,blat.proc3829897.chain_3161,blat.proc3829897.chain_3162	4	STRG.22470.1,blat.proc3829897.chain_3163	2
scaffold_10	alt_donor	17007382	17007383	+	asmbl_5011,asmbl_5013	none	STRG.13136.2,STRG.13136.4,Trinity_GG_7232_c0_g1_i2,blat.proc3829877.chain_1666	4	STRG.13136.1,STRG.13136.3,Trinity_GG_7232_c0_g1_i1,blat.proc3829877.chain_1665	4
scaffold_20	alt_donor	9825846	9825847	-	asmbl_26982,asmbl_26983,asmbl_26984	none	STRG.23515.1,STRG.23515.2,blat.proc3829899.chain_527,blat.proc3829899.chain_528,blat.proc3829899.chain_530	5	blat.proc3829899.chain_529	1
scaffold_15	starts_in_intron	8419057	8419057	-	asmbl_15363	none	blat.proc3829895.chain_3138	1	STRG.18385.1	1
scaffold_3	alt_donor	5005139	5005140	+	asmbl_40017,asmbl_40019	none	STRG.3199.1,STRG.3199.2	2	STRG.3199.3,Trinity_GG_1799_c0_g2_i2	2
scaffold_1	ends_in_intron	21422903	21422903	-	asmbl_1211	none	blat.proc3829887.chain_1327	1	STRG.1445.1,blat.proc3829887.chain_1328	2
scaffold_2	alt_acceptor	11795699	11795700	+	asmbl_24808	none	STRG.2277.1,Trinity_GG_1273_c0_g1_i1,blat.proc3829871.chain_2369	3	blat.proc3829871.chain_2370	1
scaffold_3	starts_in_intron	13716453	13716453	+	asmbl_40413	none	Trinity_GG_2080_c1_g1_i1,blat.proc3829873.chain_116	2	STRG.3713.1,Trinity_GG_2080_c0_g1_i1,blat.proc3829873.chain_115	3
scaffold_7	retained_intron	11851482	11851796	+	asmbl_51071	none	STRG.9296.2,Trinity_GG_5157_c0_g1_i2,blat.proc3829875.chain_1752	3	STRG.9296.3,blat.proc3829875.chain_1751	2
scaffold_4	alt_acceptor	16139182	16139183	+	asmbl_43294	none	STRG.5189.1,blat.proc3829873.chain_1460	2	STRG.5189.2,blat.proc3829873.chain_1461	2
scaffold_21	spliced_intron	405731	406307	-	asmbl_27344,asmbl_27345	none	STRG.23722.5,blat.proc3829899.chain_774	2	STRG.23722.1,STRG.23722.2,STRG.23722.3,Trinity_GG_30229_c0_g1_i1,Trinity_GG_30229_c0_g1_i2,blat.proc3829899.chain_768,blat.proc3829899.chain_769,blat.proc3829899.chain_772,blat.proc3829899.chain_773	9
scaffold_13	alt_acceptor	534811	534812	-	asmbl_9322,asmbl_9324	none	STRG.15432.1,Trinity_GG_25674_c0_g1_i1,Trinity_GG_25674_c0_g1_i4,blat.proc3829895.chain_187,blat.proc3829895.chain_189	5	STRG.15432.2,STRG.15432.3	2
scaffold_19	alt_acceptor	13372924	13372925	+	asmbl_22682	none	STRG.22644.1,Trinity_GG_12484_c0_g1_i2,blat.proc3829881.chain_3530	3	STRG.22644.2,STRG.22644.3	2
scaffold_18	ends_in_intron	7685206	7685206	+	asmbl_20805	none	blat.proc3829881.chain_2441	1	STRG.21464.1,STRG.21464.2,STRG.21464.3,blat.proc3829881.chain_2435,blat.proc3829881.chain_2436,blat.proc3829881.chain_2437,blat.proc3829881.chain_2440	7
scaffold_1	retained_intron	849802	849972	+	asmbl_1414,asmbl_1417	none	STRG.41.5,Trinity_GG_29_c0_g1_i3,Trinity_GG_29_c0_g1_i4,blat.proc3829871.chain_51,blat.proc3829871.chain_53	5	STRG.41.2,Trinity_GG_29_c0_g1_i1,blat.proc3829871.chain_50	3
scaffold_6	skipped_exon	9909113	9911434	+	asmbl_47184	none	STRG.7827.4	1	STRG.7827.1,STRG.7827.2	2
scaffold_17	retained_intron	8951543	8951643	+	asmbl_18174	none	STRG.20504.2,blat.proc3829881.chain_1273	2	STRG.20504.1,blat.proc3829881.chain_1274	2
scaffold_21	starts_in_intron	10001909	10001909	-	asmbl_28021	none	blat.proc3829899.chain_1547	1	STRG.24454.1,blat.proc3829899.chain_1546	2
scaffold_23	starts_in_intron	3511314	3511314	-	asmbl_31523	none	blat.proc3829899.chain_2891	1	STRG.25754.1,STRG.25754.2,blat.proc3829899.chain_2893,blat.proc3829899.chain_2895	4
scaffold_18	alt_acceptor	13662474	13662475	+	asmbl_21053	none	STRG.21791.2	1	STRG.21791.1,blat.proc3829881.chain_2751	2
scaffold_5	retained_intron	16246188	16246207	+	asmbl_44722	none	STRG.6801.1,Trinity_GG_3683_c0_g1_i2,Trinity_GG_3683_c0_g1_i3,blat.proc3829873.chain_2858	4	STRG.6801.2	1
scaffold_13	skipped_exon	15672407	15672506	+	asmbl_11506	none	STRG.16598.3	1	STRG.16598.2	1
scaffold_1	alt_donor	11763018	11763019	+	asmbl_2131	none	STRG.795.3	1	STRG.795.1,STRG.795.2,blat.proc3829871.chain_892,blat.proc3829871.chain_893	4
scaffold_14	alt_donor	2840704	2840705	+	asmbl_11857,asmbl_11858	none	STRG.16867.1,STRG.16867.2,Trinity_GG_9281_c0_g1_i1,blat.proc3829879.chain_1585	4	STRG.16867.3	1
scaffold_13	ends_in_intron	396466	396466	-	asmbl_9303	none	Trinity_GG_25691_c1_g1_i1,blat.proc3829895.chain_235	2	STRG.15428.1,STRG.15428.2,STRG.15428.3,Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i20,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i25,Trinity_GG_25691_c0_g1_i7,Trinity_GG_25691_c0_g1_i8,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_221,blat.proc3829895.chain_223,blat.proc3829895.chain_224,blat.proc3829895.chain_226,blat.proc3829895.chain_229,blat.proc3829895.chain_230,blat.proc3829895.chain_232,blat.proc3829895.chain_233,blat.proc3829895.chain_234	21
scaffold_18	alternate_exon	8862366	8862546	-	asmbl_20064	none	Trinity_GG_29045_c0_g1_i17,blat.proc3829897.chain_2361	2	blat.proc3829897.chain_2357	1
scaffold_25	ends_in_intron	5814166	5814166	-	asmbl_34261	none	STRG.27454.2,blat.proc3829901.chain_774	2	STRG.27454.1,blat.proc3829901.chain_771,blat.proc3829901.chain_773	3
scaffold_19	retained_intron	8232992	8233161	+	asmbl_22309	none	blat.proc3829881.chain_3180	1	STRG.22270.1,blat.proc3829881.chain_3179	2
scaffold_14	alt_acceptor	15116263	15116264	+	asmbl_12550	none	blat.proc3829879.chain_2411	1	Trinity_GG_9754_c0_g1_i8,blat.proc3829879.chain_2407	2
scaffold_9	retained_intron	16558842	16559279	-	asmbl_55544,asmbl_55546,asmbl_55547	none	STRG.11797.2,STRG.11797.3,STRG.11797.6,Trinity_GG_23481_c0_g1_i1,blat.proc3829893.chain_81	5	STRG.11797.5	1
scaffold_14	retained_intron	15565487	15565540	+	asmbl_12609	none	STRG.17784.1	1	STRG.17784.3	1
scaffold_12	starts_in_intron	9231951	9231951	-	asmbl_7786	none	STRG.14912.1	1	STRG.14912.2,STRG.14912.3,STRG.14912.4,STRG.14912.5,STRG.14912.6,STRG.14912.7,blat.proc3829893.chain_3304,blat.proc3829893.chain_3307	8
scaffold_20	spliced_intron	4262299	4262354	-	asmbl_26650	none	STRG.23096.1	1	STRG.23096.2	1
scaffold_6	starts_in_intron	12116756	12116756	+	asmbl_47310	none	STRG.7978.4,Trinity_GG_4362_c0_g1_i2,blat.proc3829875.chain_360	3	STRG.7978.1,STRG.7978.2,blat.proc3829875.chain_358	3
scaffold_14	alternate_exon	317043	319048	-	asmbl_12799	none	blat.proc3829895.chain_1368	1	STRG.16711.1	1
scaffold_14	spliced_intron	9067614	9067868	-	asmbl_13333	none	blat.proc3829895.chain_1959	1	STRG.17303.1,blat.proc3829895.chain_1961	2
scaffold_3	retained_intron	14334025	14334182	-	asmbl_39311	none	STRG.3779.3,Trinity_GG_19094_c0_g1_i4,blat.proc3829887.chain_3555	3	STRG.3779.1,STRG.3779.2,Trinity_GG_19094_c0_g1_i1,Trinity_GG_19094_c0_g1_i2,blat.proc3829887.chain_3554,blat.proc3829887.chain_3556	6
scaffold_1	skipped_exon	6496620	6497024	-	asmbl_372	none	STRG.443.2	1	blat.proc3829887.chain_247	1
scaffold_3	spliced_intron	1767415	1767456	+	asmbl_39836	none	STRG.2990.3	1	STRG.2990.2,Trinity_GG_1694_c0_g1_i5	2
scaffold_11	alt_donor	1156522	1156523	+	asmbl_5283,asmbl_5285	none	STRG.13301.1,Trinity_GG_7267_c0_g1_i2,Trinity_GG_7267_c0_g1_i7,blat.proc3829877.chain_1725,blat.proc3829877.chain_1726	5	Trinity_GG_7267_c0_g1_i5,blat.proc3829877.chain_1723	2
scaffold_369	retained_intron	1680	1727	+	asmbl_41007	none	STRG.30276.1	1	STRG.30276.2	1
scaffold_10	alt_acceptor	17117714	17117715	+	asmbl_5016	none	STRG.13148.1,blat.proc3829877.chain_1676	2	STRG.13148.2	1
scaffold_3	starts_in_intron	6185794	6185794	-	asmbl_38864	none	blat.proc3829887.chain_3013	1	STRG.3262.1,STRG.3262.3,STRG.3262.4,blat.proc3829887.chain_3012,blat.proc3829887.chain_3014,blat.proc3829887.chain_3015	6
scaffold_4	spliced_intron	4051130	4051203	+	asmbl_42536	none	STRG.4307.1,Trinity_GG_2360_c0_g1_i1,blat.proc3829873.chain_593	3	Trinity_GG_2360_c0_g1_i2,blat.proc3829873.chain_594	2
scaffold_20	retained_intron	10986547	10986918	+	asmbl_26158,asmbl_26161	none	STRG.23608.2,Trinity_GG_13068_c0_g1_i3,blat.proc3829883.chain_749	3	STRG.23608.3	1
scaffold_26	spliced_intron	5042836	5042939	+	asmbl_35463,asmbl_35464,asmbl_35465,asmbl_35466,asmbl_35468,asmbl_35469,asmbl_35479,asmbl_35480,asmbl_35481	none	STRG.28206.1,blat.proc3829885.chain_1156,blat.proc3829885.chain_1157,blat.proc3829885.chain_1158,blat.proc3829885.chain_1159,blat.proc3829885.chain_1162,blat.proc3829885.chain_1163,blat.proc3829885.chain_1164,blat.proc3829885.chain_1168,blat.proc3829885.chain_1169	10	blat.proc3829883.chain_2396	1
scaffold_20	spliced_intron	10987413	10987518	+	asmbl_26159,asmbl_26160,asmbl_26161	none	STRG.23608.2,STRG.23608.3,Trinity_GG_13068_c0_g1_i4,blat.proc3829883.chain_750	4	STRG.23608.1,Trinity_GG_13068_c0_g1_i1,Trinity_GG_13068_c0_g1_i3,blat.proc3829883.chain_749,blat.proc3829883.chain_751	5
scaffold_12	ends_in_intron	10575647	10575647	+	asmbl_8902	none	blat.proc3829877.chain_3543	1	STRG.15013.1,blat.proc3829877.chain_3542	2
scaffold_25	spliced_intron	4538956	4539139	+	asmbl_33507	none	STRG.27374.1,blat.proc3829885.chain_414	2	Trinity_GG_15099_c0_g1_i6,blat.proc3829885.chain_412	2
scaffold_23	starts_in_intron	4169068	4169068	+	asmbl_30794	none	blat.proc3829883.chain_2696	1	STRG.25817.1,STRG.25817.2,Trinity_GG_14244_c0_g1_i4,blat.proc3829883.chain_2698,blat.proc3829883.chain_2699	5
scaffold_1	spliced_intron	5206637	5207244	+	asmbl_1704,asmbl_1705,asmbl_1707,asmbl_1708	none	STRG.323.2,blat.proc3829871.chain_396,blat.proc3829871.chain_397,blat.proc3829871.chain_398	4	STRG.323.1,STRG.323.3,blat.proc3829871.chain_392,blat.proc3829871.chain_399,blat.proc3829871.chain_401	5
scaffold_28	skipped_exon	5390808	5391483	+	asmbl_38281,asmbl_38283	none	STRG.29664.3,Trinity_GG_16450_c0_g1_i7,blat.proc3829885.chain_2783	3	STRG.29664.1,STRG.29664.2,Trinity_GG_16450_c0_g1_i2,Trinity_GG_16450_c0_g1_i9,blat.proc3829885.chain_2784,blat.proc3829885.chain_2787	6
scaffold_4	alternate_exon	16353177	16353481	+	asmbl_43305	none	STRG.5213.2	1	STRG.5213.1,blat.proc3829873.chain_1517	2
scaffold_25	retained_intron	3755005	3755481	+	asmbl_33460	none	STRG.27310.2,blat.proc3829885.chain_337	2	STRG.27310.1,blat.proc3829885.chain_336,blat.proc3829885.chain_338	3
scaffold_22	alt_acceptor	3001811	3001812	-	asmbl_29924	none	STRG.24772.1,blat.proc3829899.chain_1883	2	STRG.24772.2	1
scaffold_12	skipped_exon	26480	28451	-	asmbl_7401	none	STRG.14396.2	1	STRG.14396.1,blat.proc3829893.chain_2805	2
scaffold_19	alt_acceptor	12398790	12398791	-	asmbl_21690,asmbl_21692,asmbl_21694	none	STRG.22557.2,STRG.22557.3,blat.proc3829897.chain_3268,blat.proc3829897.chain_3271,blat.proc3829897.chain_3272	5	STRG.22557.1,blat.proc3829897.chain_3269,blat.proc3829897.chain_3270	3
scaffold_12	alternate_exon	9227785	9227954	-	asmbl_7784	none	STRG.14910.3,blat.proc3829893.chain_3311	2	STRG.14910.1,STRG.14910.2,blat.proc3829893.chain_3310	3
scaffold_20	starts_in_intron	6761064	6761064	+	asmbl_25832	none	Trinity_GG_12834_c1_g1_i1,blat.proc3829883.chain_369	2	STRG.23241.1,blat.proc3829883.chain_370,blat.proc3829883.chain_371	3
scaffold_4	skipped_exon	246127	248695	+	asmbl_42418	none	STRG.4120.2	1	STRG.4120.1	1
scaffold_14	retained_intron	11676499	11676859	-	asmbl_13506	none	STRG.17497.3,blat.proc3829895.chain_2193	2	STRG.17497.2,blat.proc3829895.chain_2194	2
scaffold_20	alt_acceptor	10384666	10384667	+	asmbl_26107,asmbl_26109,asmbl_26113,asmbl_26114,asmbl_26115	none	STRG.23569.1,STRG.23569.2,STRG.23569.3,STRG.23569.5,Trinity_GG_12979_c0_g1_i2,Trinity_GG_12979_c0_g1_i6,blat.proc3829883.chain_591,blat.proc3829883.chain_594	8	Trinity_GG_12979_c0_g1_i5,blat.proc3829883.chain_592	2
scaffold_25	alt_donor	6095949	6095950	-	asmbl_34300	none	Trinity_GG_32415_c0_g1_i3,blat.proc3829901.chain_803	2	STRG.27486.1,Trinity_GG_32415_c0_g1_i2,Trinity_GG_32415_c0_g1_i4,blat.proc3829901.chain_804,blat.proc3829901.chain_805,blat.proc3829901.chain_806	6
scaffold_22	retained_exon	9718220	9719198	+	asmbl_29600	none	STRG.25292.3	1	STRG.25292.1,blat.proc3829883.chain_2231	2
scaffold_5	spliced_intron	19351052	19351309	-	asmbl_46274,asmbl_46275	none	STRG.7024.1,STRG.7024.2,blat.proc3829889.chain_2998	3	blat.proc3829889.chain_2997	1
scaffold_12	retained_intron	6526646	6526749	-	asmbl_7674	none	blat.proc3829893.chain_3129	1	STRG.14739.1,STRG.14739.2,blat.proc3829893.chain_3130	3
scaffold_27	alt_acceptor	9965583	9965584	+	asmbl_36507,asmbl_36508	none	STRG.29210.1,STRG.29210.2,blat.proc3829885.chain_2348,blat.proc3829885.chain_2349	4	STRG.29210.3	1
scaffold_24	retained_intron	7786686	7786927	-	asmbl_33050	none	blat.proc3829901.chain_125	1	blat.proc3829901.chain_126	1
scaffold_19	spliced_intron	13173213	13173287	+	asmbl_22673	none	STRG.22628.1,blat.proc3829881.chain_3526	2	blat.proc3829881.chain_3528,blat.proc3829881.chain_3529	2
scaffold_2	alt_acceptor	16285378	16285379	+	asmbl_25137,asmbl_25139	none	STRG.2560.1,blat.proc3829871.chain_2742,blat.proc3829871.chain_2744	3	STRG.2560.2,blat.proc3829871.chain_2743	2
scaffold_2	starts_in_intron	16304839	16304839	+	asmbl_25149	none	Trinity_GG_1450_c0_g1_i2,blat.proc3829871.chain_2748	2	STRG.2562.1,blat.proc3829871.chain_2747	2
scaffold_7	retained_exon	4514094	4514159	+	asmbl_50617	none	STRG.8814.3,blat.proc3829875.chain_1229	2	STRG.8814.2	1
scaffold_5	alt_donor	12829801	12829802	-	asmbl_45867,asmbl_45869	none	STRG.6505.2,STRG.6505.3,blat.proc3829889.chain_2592	3	STRG.6505.1,blat.proc3829889.chain_2591	2
scaffold_8	alternate_exon	16142411	16142609	-	asmbl_53372	none	blat.proc3829891.chain_2745	1	STRG.10597.1,blat.proc3829891.chain_2741,blat.proc3829891.chain_2743	3
scaffold_23	starts_in_intron	2207673	2207673	-	asmbl_31430	none	blat.proc3829899.chain_2692	1	STRG.25677.4,blat.proc3829899.chain_2690	2
scaffold_26	retained_intron	5954384	5954477	-	asmbl_34927	none	blat.proc3829901.chain_1472	1	STRG.28289.1,STRG.28289.2,blat.proc3829901.chain_1471	3
scaffold_24	alt_acceptor	7204226	7204227	+	asmbl_32384	none	STRG.26750.1	1	STRG.26750.2	1
scaffold_8	alternate_exon	17974550	17974946	-	asmbl_53506	none	STRG.10695.1,Trinity_GG_22958_c0_g1_i1,blat.proc3829891.chain_2852	3	STRG.10695.3	1
scaffold_9	spliced_intron	17469882	17470142	-	asmbl_55612	none	STRG.11832.2	1	STRG.11832.1,blat.proc3829893.chain_239	2
scaffold_18	alt_donor	7795877	7795878	-	asmbl_20014	none	STRG.21474.2,Trinity_GG_29019_c0_g1_i2,blat.proc3829897.chain_2304	3	STRG.21474.1,Trinity_GG_29019_c0_g1_i1,blat.proc3829897.chain_2305	3
scaffold_15	spliced_intron	2603367	2603410	+	asmbl_14012,asmbl_14013	none	STRG.18026.2,STRG.18026.3	2	STRG.18026.1,Trinity_GG_9909_c0_g1_i1,blat.proc3829879.chain_2687	3
scaffold_2	alt_donor	17611303	17611304	+	asmbl_25221	none	STRG.2650.3	1	STRG.2650.1,STRG.2650.2,blat.proc3829871.chain_2855,blat.proc3829871.chain_2856,blat.proc3829871.chain_2857	5
scaffold_23	starts_in_intron	4104118	4104118	-	asmbl_31549,asmbl_31552	none	STRG.25802.4,STRG.25802.5,blat.proc3829899.chain_2934	3	STRG.25802.1,STRG.25802.2,blat.proc3829899.chain_2935	3
scaffold_9	alt_donor	9990710	9990711	-	asmbl_55214	none	STRG.11352.1,blat.proc3829891.chain_3457	2	STRG.11352.2,blat.proc3829891.chain_3458	2
scaffold_3	retained_intron	9515750	9516729	+	asmbl_40186	none	STRG.3434.2,Trinity_GG_1959_c1_g1_i1,blat.proc3829871.chain_3642	3	STRG.3434.1,Trinity_GG_1959_c0_g1_i1,Trinity_GG_1959_c0_g1_i3,blat.proc3829871.chain_3637,blat.proc3829871.chain_3639,blat.proc3829871.chain_3641	6
scaffold_9	spliced_intron	9643517	9643587	+	asmbl_54198	none	STRG.11323.1,blat.proc3829877.chain_84	2	blat.proc3829877.chain_83	1
scaffold_20	alternate_exon	10786647	10787208	+	asmbl_26149	none	blat.proc3829883.chain_742	1	STRG.23592.3	1
scaffold_17	alternate_exon	8399215	8399364	-	asmbl_19140,asmbl_19143	none	STRG.20450.2,Trinity_GG_28499_c0_g1_i2,blat.proc3829897.chain_1385	3	STRG.20450.1,blat.proc3829897.chain_1386	2
scaffold_3	skipped_exon	1839647	1840955	+	asmbl_39845	none	STRG.3006.2	1	STRG.3006.1,blat.proc3829871.chain_3188	2
scaffold_15	spliced_intron	4493112	4493215	+	asmbl_14083,asmbl_14084,asmbl_14085,asmbl_14089	none	STRG.18165.1,blat.proc3829879.chain_2746,blat.proc3829879.chain_2747,blat.proc3829879.chain_2748,blat.proc3829879.chain_2749	5	STRG.18165.2,blat.proc3829879.chain_2750	2
scaffold_24	alt_donor	1517753	1517754	+	asmbl_32089	none	STRG.26383.2	1	STRG.26383.1,blat.proc3829899.chain_3429	2
scaffold_7	starts_in_intron	14919369	14919369	+	asmbl_51287	none	Trinity_GG_5216_c0_g1_i1,blat.proc3829875.chain_1845	2	STRG.9497.1,blat.proc3829875.chain_1846	2
scaffold_15	retained_intron	5454516	5454744	-	asmbl_15219	none	Trinity_GG_27252_c0_g1_i1,blat.proc3829895.chain_2958	2	STRG.18219.1,STRG.18219.2,STRG.18219.3,blat.proc3829895.chain_2952,blat.proc3829895.chain_2953,blat.proc3829895.chain_2955,blat.proc3829895.chain_2956	7
scaffold_1	retained_intron	5735051	5735263	+	asmbl_1761	none	blat.proc3829871.chain_442	1	STRG.380.1,STRG.380.2,STRG.380.3,blat.proc3829871.chain_443,blat.proc3829871.chain_446	5
scaffold_27	starts_in_intron	316725	316725	-	asmbl_36617	none	STRG.28538.1	1	STRG.28538.2,STRG.28538.3,blat.proc3829901.chain_1673	3
scaffold_3	alt_donor	17535647	17535648	-	asmbl_39516,asmbl_39517,asmbl_39518,asmbl_39520	none	STRG.3987.2,STRG.3987.3,STRG.3987.4,blat.proc3829889.chain_89,blat.proc3829889.chain_90,blat.proc3829889.chain_91,blat.proc3829889.chain_92	7	STRG.3987.1	1
scaffold_4	starts_in_intron	8628576	8628576	+	asmbl_42903	none	Trinity_GG_2570_c0_g1_i1,blat.proc3829873.chain_997	2	STRG.4684.1,STRG.4684.2,blat.proc3829873.chain_998,blat.proc3829873.chain_999	4
scaffold_17	alt_acceptor	7076527	7076528	+	asmbl_18023	none	STRG.20370.1,blat.proc3829881.chain_1138	2	STRG.20370.2	1
scaffold_21	retained_exon	2469229	2469270	-	asmbl_27481,asmbl_27482,asmbl_27485	none	STRG.23863.1,STRG.23863.2,STRG.23863.4,blat.proc3829899.chain_898,blat.proc3829899.chain_902,blat.proc3829899.chain_906	6	blat.proc3829899.chain_904	1
scaffold_20	alt_donor	7146610	7146611	-	asmbl_26799	none	blat.proc3829883.chain_388	1	STRG.23267.1	1
scaffold_18	ends_in_intron	1712826	1712826	-	asmbl_19674	none	Trinity_GG_28806_c0_g1_i2,blat.proc3829897.chain_1950	2	STRG.21051.1,Trinity_GG_28806_c0_g1_i1,blat.proc3829897.chain_1949	3
scaffold_28	alt_donor	539890	539891	-	asmbl_37236	none	blat.proc3829901.chain_2297	1	STRG.29258.1,STRG.29258.2,STRG.29258.3,blat.proc3829901.chain_2295,blat.proc3829901.chain_2296	5
scaffold_1	alt_donor	14416621	14416622	-	asmbl_920	none	STRG.1035.1,blat.proc3829887.chain_936	2	STRG.1035.2	1
scaffold_26	spliced_intron	6350865	6351156	-	asmbl_34954	none	STRG.28315.5,blat.proc3829901.chain_1406	2	STRG.28315.1,blat.proc3829901.chain_1401	2
scaffold_11	retained_exon	9131081	9131092	+	asmbl_5831	none	blat.proc3829877.chain_2417	1	STRG.13941.1,STRG.13941.2,blat.proc3829877.chain_2418,blat.proc3829877.chain_2419,blat.proc3829877.chain_2420	5
scaffold_11	spliced_intron	14794936	14794956	+	asmbl_6081	none	STRG.14247.1	1	Trinity_GG_7858_c0_g1_i2	1
scaffold_1	alternate_exon	20007380	20007995	+	asmbl_2589	none	STRG.1369.1,Trinity_GG_753_c0_g1_i2,blat.proc3829871.chain_1334	3	STRG.1369.2	1
scaffold_27	spliced_intron	6782164	6782627	-	asmbl_37037	none	STRG.29027.2,blat.proc3829901.chain_2190	2	Trinity_GG_33279_c0_g1_i1,blat.proc3829901.chain_2192	2
scaffold_12	alternate_exon	3803786	3804075	+	asmbl_8532	none	STRG.14574.3,blat.proc3829877.chain_3095	2	STRG.14574.1,blat.proc3829877.chain_3096,blat.proc3829877.chain_3097	3
scaffold_12	spliced_intron	12288119	12290941	-	asmbl_7990	none	STRG.15114.5	1	STRG.15114.1,Trinity_GG_25420_c1_g1_i1,blat.proc3829893.chain_3462	3
scaffold_7	alt_donor	2311990	2311991	+	asmbl_50511	none	STRG.8659.3	1	STRG.8659.1,STRG.8659.2,Trinity_GG_4762_c0_g1_i2,blat.proc3829875.chain_1092	4
scaffold_9	spliced_intron	7796656	7797444	+	asmbl_54122,asmbl_54123,asmbl_54126	none	blat.proc3829875.chain_3706,blat.proc3829875.chain_3708,blat.proc3829875.chain_3711,blat.proc3829875.chain_3714	4	blat.proc3829875.chain_3709,blat.proc3829875.chain_3710,blat.proc3829875.chain_3713,blat.proc3829875.chain_3716	4
scaffold_8	retained_intron	6161273	6161428	-	asmbl_52860	none	blat.proc3829891.chain_2217	1	STRG.10012.1,STRG.10012.3,Trinity_GG_22628_c0_g1_i1,blat.proc3829891.chain_2213,blat.proc3829891.chain_2214,blat.proc3829891.chain_2215,blat.proc3829891.chain_2218	7
scaffold_1	retained_intron	14521611	14522141	-	asmbl_934,asmbl_936	none	STRG.1047.2,Trinity_GG_17569_c0_g1_i1,blat.proc3829887.chain_954,blat.proc3829887.chain_955	4	STRG.1047.1,blat.proc3829887.chain_956,blat.proc3829887.chain_957	3
scaffold_5	spliced_intron	10973470	10973567	+	asmbl_44387	none	STRG.6369.1,blat.proc3829873.chain_2459	2	blat.proc3829873.chain_2458	1
scaffold_24	ends_in_intron	5946393	5946393	+	asmbl_32273	none	STRG.26645.2	1	STRG.26645.1,blat.proc3829883.chain_3537,blat.proc3829883.chain_3539,blat.proc3829883.chain_3542,blat.proc3829883.chain_3543,blat.proc3829883.chain_3544,blat.proc3829883.chain_3545,blat.proc3829883.chain_3547,blat.proc3829883.chain_3548,blat.proc3829883.chain_3549	10
scaffold_6	alt_donor	13148553	13148554	-	asmbl_48821	none	STRG.8066.2,Trinity_GG_21598_c0_g1_i1,blat.proc3829891.chain_368	3	STRG.8066.1,Trinity_GG_21598_c0_g1_i2,blat.proc3829891.chain_367	3
scaffold_28	retained_intron	5024052	5024125	+	asmbl_38259,asmbl_38265	none	STRG.29640.3,Trinity_GG_16373_c2_g1_i2,blat.proc3829885.chain_2640,blat.proc3829885.chain_2643	4	STRG.29640.1,STRG.29640.2,blat.proc3829885.chain_2641,blat.proc3829885.chain_2642	4
scaffold_17	alt_donor	11036071	11036072	-	asmbl_19314	none	STRG.20653.4	1	STRG.20653.1	1
scaffold_17	alt_donor	13610475	13610476	+	asmbl_18460	none	STRG.20825.2	1	STRG.20825.1	1
scaffold_13	alt_acceptor	772979	772980	-	asmbl_9335	none	STRG.15447.1,blat.proc3829895.chain_183	2	STRG.15447.2	1
scaffold_23	alt_acceptor	2164596	2164597	-	asmbl_31420	none	STRG.25669.5	1	STRG.25669.1,STRG.25669.3,STRG.25669.6	3
scaffold_17	retained_intron	3141752	3141861	-	asmbl_18844	none	STRG.20084.2	1	STRG.20084.1,blat.proc3829897.chain_996	2
scaffold_15	alt_acceptor	7895059	7895060	+	asmbl_14253	none	STRG.18355.1	1	STRG.18355.2	1
scaffold_28	alt_donor	4209697	4209698	+	asmbl_38213,asmbl_38214,asmbl_38215	none	STRG.29593.1,STRG.29593.4,STRG.29593.5,blat.proc3829885.chain_2724,blat.proc3829885.chain_2727	5	STRG.29593.6,blat.proc3829885.chain_2726	2
scaffold_3	starts_in_intron	8131169	8131169	+	asmbl_40159	none	blat.proc3829871.chain_3574	1	STRG.3392.1,blat.proc3829871.chain_3573	2
scaffold_23	alternate_exon	757803	759360	-	asmbl_31323	none	STRG.25547.1,blat.proc3829899.chain_2638	2	Trinity_GG_31289_c0_g1_i2	1
scaffold_11	alt_acceptor	171779	171780	+	asmbl_5216,asmbl_5217,asmbl_5219,asmbl_5220	none	STRG.13231.1,STRG.13231.3,STRG.13231.4,STRG.13231.5	4	STRG.13231.2	1
scaffold_732	retained_intron	766	906	+	asmbl_51587	none	Trinity_GG_16829_c0_g1_i8,Trinity_GG_33940_c0_g1_i2	2	STRG.30424.1,blat.proc3829885.chain_3427,blat.proc3829885.chain_3428,blat.proc3829885.chain_3430	4
scaffold_10	skipped_exon	1490744	1493412	-	asmbl_2977	none	STRG.12017.3,blat.proc3829893.chain_389	2	STRG.12017.1,STRG.12017.2,blat.proc3829893.chain_390,blat.proc3829893.chain_392,blat.proc3829893.chain_394	5
scaffold_13	skipped_exon	6290886	6293319	+	asmbl_10902,asmbl_10905	none	STRG.15910.2,blat.proc3829879.chain_560,blat.proc3829879.chain_561	3	STRG.15910.1,blat.proc3829879.chain_559,blat.proc3829879.chain_562	3
scaffold_4	ends_in_intron	3298844	3298844	+	asmbl_42498	none	blat.proc3829873.chain_608	1	STRG.4256.1,blat.proc3829873.chain_607,blat.proc3829873.chain_609	3
scaffold_11	alt_donor	3552623	3552624	+	asmbl_5412	none	blat.proc3829877.chain_1947	1	STRG.13470.1,blat.proc3829877.chain_1949	2
scaffold_16	alternate_exon	6147056	6147791	+	asmbl_17070,asmbl_17076	none	STRG.19342.2,STRG.19342.4,blat.proc3829881.chain_210	3	STRG.19342.1,blat.proc3829881.chain_208,blat.proc3829881.chain_209,blat.proc3829881.chain_212,blat.proc3829881.chain_214	5
scaffold_13	alt_donor	2339458	2339459	+	asmbl_10581,asmbl_10583,asmbl_10586	none	STRG.15543.11,blat.proc3829879.chain_154,blat.proc3829879.chain_157	3	blat.proc3829879.chain_156,blat.proc3829879.chain_163	2
scaffold_6	alt_acceptor	4600505	4600506	+	asmbl_46835	none	STRG.7441.2	1	STRG.7441.1,blat.proc3829873.chain_3471	2
scaffold_2	alt_acceptor	4237987	4237988	-	asmbl_23080,asmbl_23081	none	STRG.1859.1,STRG.1859.2,blat.proc3829887.chain_1733,blat.proc3829887.chain_1734	4	STRG.1859.3	1
scaffold_10	alt_donor	7684017	7684018	+	asmbl_4579	none	blat.proc3829877.chain_1168	1	STRG.12548.2,blat.proc3829877.chain_1167	2
scaffold_13	ends_in_intron	8909402	8909402	+	asmbl_11145	none	Trinity_GG_8845_c0_g1_i1	1	STRG.16150.1,STRG.16150.2,Trinity_GG_8845_c0_g1_i3,blat.proc3829879.chain_825,blat.proc3829879.chain_826	5
scaffold_8	alt_donor	14569798	14569799	+	asmbl_52376	none	blat.proc3829875.chain_3057	1	STRG.10535.2	1
scaffold_18	alternate_exon	4768038	4768248	+	asmbl_20586	none	STRG.21260.4,Trinity_GG_11674_c0_g1_i2,blat.proc3829881.chain_2086	3	STRG.21260.3,STRG.21260.5	2
scaffold_26	spliced_intron	3651416	3651580	-	asmbl_34773	none	STRG.28029.2,blat.proc3829901.chain_1203	2	STRG.28029.1,blat.proc3829901.chain_1204	2
scaffold_5	alt_donor	8069586	8069587	+	asmbl_44185,asmbl_44186	none	STRG.6161.1,STRG.6161.2,blat.proc3829873.chain_2255	3	STRG.6161.3	1
scaffold_17	spliced_intron	3998584	3998705	+	asmbl_17882,asmbl_17887	none	STRG.20145.2,blat.proc3829881.chain_989	2	STRG.20145.1,STRG.20145.3,STRG.20145.4,blat.proc3829881.chain_988,blat.proc3829881.chain_991,blat.proc3829881.chain_992	6
scaffold_1	alt_donor	5733814	5733815	+	asmbl_1759	none	STRG.380.2,blat.proc3829871.chain_446	2	STRG.380.1,blat.proc3829871.chain_442,blat.proc3829871.chain_443	3
scaffold_13	retained_exon	15363483	15364038	+	asmbl_11476	none	Trinity_GG_9120_c0_g1_i3,blat.proc3829879.chain_1298	2	Trinity_GG_9120_c0_g1_i1,blat.proc3829879.chain_1300	2
scaffold_1	spliced_intron	7370029	7370112	-	asmbl_440,asmbl_441	none	STRG.517.2,STRG.517.5	2	STRG.517.1,STRG.517.4,Trinity_GG_17298_c0_g1_i1,blat.proc3829887.chain_413	4
scaffold_18	alt_acceptor	8410406	8410407	+	asmbl_20864	none	STRG.21507.2	1	STRG.21507.1,Trinity_GG_11897_c0_g1_i1,blat.proc3829881.chain_2509	3
scaffold_9	starts_in_intron	10242362	10242362	+	asmbl_54265	none	Trinity_GG_6305_c0_g1_i1,blat.proc3829877.chain_61	2	STRG.11358.1,STRG.11358.2,blat.proc3829877.chain_57,blat.proc3829877.chain_59	4
scaffold_7	retained_intron	6042675	6043339	-	asmbl_49722	none	STRG.8899.1,Trinity_GG_22045_c0_g1_i2,Trinity_GG_22045_c0_g1_i5,blat.proc3829891.chain_1182	4	STRG.8899.3	1
scaffold_6	spliced_intron	3055244	3055748	+	asmbl_46743,asmbl_46749,asmbl_46751	none	STRG.7308.2,blat.proc3829873.chain_3440,blat.proc3829873.chain_3443,blat.proc3829873.chain_3445	4	blat.proc3829873.chain_3441,blat.proc3829873.chain_3444,blat.proc3829873.chain_3446	3
scaffold_10	alt_donor	4128321	4128322	-	asmbl_3174,asmbl_3175	none	STRG.12241.1,blat.proc3829893.chain_640,blat.proc3829893.chain_642	3	STRG.12241.2	1
scaffold_8	alternate_exon	11743765	11744276	-	asmbl_53158	none	STRG.10368.1,blat.proc3829891.chain_2442	2	Trinity_GG_22741_c0_g2_i1,blat.proc3829891.chain_2443	2
scaffold_2	alternate_exon	17976840	17981831	+	asmbl_25249	none	STRG.2688.1	1	STRG.2688.3,blat.proc3829871.chain_2905	2
scaffold_7	skipped_exon	12388891	12390644	-	asmbl_50018	none	blat.proc3829891.chain_1535	1	STRG.9328.1,blat.proc3829891.chain_1531,blat.proc3829891.chain_1533,blat.proc3829891.chain_1534,blat.proc3829891.chain_1536,blat.proc3829891.chain_1537,blat.proc3829891.chain_1538	7
scaffold_20	alt_donor	1876031	1876032	-	asmbl_26544	none	STRG.22909.1	1	blat.proc3829883.chain_53	1
scaffold_19	alternate_exon	8893089	8893770	-	asmbl_21527	none	STRG.22333.1,blat.proc3829897.chain_3044	2	STRG.22333.2	1
scaffold_13	alternate_exon	13570308	13570330	+	asmbl_11376	none	Trinity_GG_9001_c0_g1_i1,Trinity_GG_9001_c0_g1_i2,blat.proc3829879.chain_1119	3	STRG.16402.1	1
scaffold_21	alt_acceptor	7491267	7491268	+	asmbl_28758	none	blat.proc3829883.chain_1413	1	STRG.24265.1,blat.proc3829883.chain_1412	2
scaffold_1	starts_in_intron	13539288	13539288	-	asmbl_826,asmbl_828	none	Trinity_GG_17468_c0_g1_i1,blat.proc3829887.chain_771,blat.proc3829887.chain_773	3	STRG.966.1,Trinity_GG_17468_c0_g1_i5,blat.proc3829887.chain_774	3
scaffold_8	skipped_exon	739423	740608	+	asmbl_51655	none	STRG.9720.1	1	blat.proc3829875.chain_2176	1
scaffold_6	spliced_intron	1585415	1585461	+	asmbl_46677	none	blat.proc3829873.chain_3283	1	STRG.7199.1,blat.proc3829873.chain_3284	2
scaffold_10	ends_in_intron	1451477	1451477	-	asmbl_2970	none	STRG.12010.2,Trinity_GG_23682_c1_g1_i1,blat.proc3829893.chain_443	3	STRG.12010.1,blat.proc3829893.chain_441	2
scaffold_13	starts_in_intron	4603031	4603031	-	asmbl_9605,asmbl_9609	none	blat.proc3829895.chain_528,blat.proc3829895.chain_533	2	STRG.15781.1,Trinity_GG_25880_c0_g1_i1,blat.proc3829895.chain_530	3
scaffold_15	retained_intron	6780650	6780734	-	asmbl_15267	none	STRG.18282.2	1	STRG.18282.1,blat.proc3829895.chain_3036	2
scaffold_16	starts_in_intron	13217490	13217490	+	asmbl_17461	none	blat.proc3829881.chain_600	1	STRG.19770.1,blat.proc3829881.chain_596,blat.proc3829881.chain_598,blat.proc3829881.chain_599	4
scaffold_21	skipped_exon	2165861	2166831	-	asmbl_27460	none	STRG.23826.2	1	STRG.23826.1,blat.proc3829899.chain_824,blat.proc3829899.chain_825,blat.proc3829899.chain_826	4
scaffold_13	alt_acceptor	6990830	6990831	+	asmbl_10991	none	STRG.15969.1	1	STRG.15969.2,blat.proc3829879.chain_600	2
scaffold_13	alt_acceptor	10044691	10044692	+	asmbl_11216	none	blat.proc3829879.chain_981	1	STRG.16231.1,blat.proc3829879.chain_980	2
scaffold_11	spliced_intron	1985555	1985593	+	asmbl_5308	none	STRG.13350.1	1	blat.proc3829893.chain_1765	1
scaffold_7	alt_donor	14730156	14730157	+	asmbl_51284	none	STRG.9499.2	1	STRG.9499.1,Trinity_GG_5232_c0_g1_i1,blat.proc3829875.chain_1876	3
scaffold_2	alt_donor	9197473	9197474	+	asmbl_24709	none	STRG.2168.2,Trinity_GG_1194_c0_g1_i2,blat.proc3829871.chain_2227	3	STRG.2168.1	1
scaffold_16	retained_intron	743885	744041	-	asmbl_16065	none	Trinity_GG_27678_c0_g1_i5,blat.proc3829897.chain_12	2	STRG.19044.1,STRG.19044.2,blat.proc3829897.chain_10,blat.proc3829897.chain_11,blat.proc3829897.chain_13,blat.proc3829897.chain_14,blat.proc3829897.chain_9	7
scaffold_17	spliced_intron	3986624	3986812	-	asmbl_18879,asmbl_18880	none	STRG.20146.1,blat.proc3829897.chain_1119	2	Trinity_GG_28339_c2_g1_i1,blat.proc3829897.chain_1118,blat.proc3829897.chain_1120	3
scaffold_1	spliced_intron	4225778	4226020	+	asmbl_1636	none	STRG.249.1,blat.proc3829871.chain_306	2	blat.proc3829871.chain_307	1
scaffold_28	retained_intron	5611216	5611372	-	asmbl_37621,asmbl_37622,asmbl_37625,asmbl_37626	none	STRG.29674.1,STRG.29674.4,STRG.29674.5,blat.proc3829901.chain_2807,blat.proc3829901.chain_2810	5	STRG.29674.3,Trinity_GG_33655_c0_g1_i8,blat.proc3829901.chain_2809	3
scaffold_5	alt_acceptor	11079223	11079224	+	asmbl_44399,asmbl_44400	none	STRG.6389.2,blat.proc3829873.chain_2530,blat.proc3829873.chain_2532	3	STRG.6389.1,STRG.6389.3,blat.proc3829873.chain_2531,blat.proc3829873.chain_2533	4
scaffold_21	starts_in_intron	5183008	5183008	+	asmbl_28576	none	Trinity_GG_13320_c0_g1_i2,blat.proc3829883.chain_1187	2	STRG.24039.1,Trinity_GG_13320_c0_g1_i1,blat.proc3829883.chain_1186	3
scaffold_10	starts_in_intron	16531454	16531454	+	asmbl_4997	none	STRG.13112.3	1	STRG.13112.1,blat.proc3829877.chain_1619,blat.proc3829877.chain_1621,blat.proc3829877.chain_1622	4
scaffold_9	alt_acceptor	6405821	6405822	+	asmbl_54081,asmbl_54082	none	STRG.11163.1,STRG.11163.3	2	STRG.11163.2,Trinity_GG_6211_c0_g1_i2,Trinity_GG_6211_c0_g1_i4,blat.proc3829875.chain_3632,blat.proc3829875.chain_3633,blat.proc3829875.chain_3634	6
scaffold_12	starts_in_intron	14274961	14274961	+	asmbl_9052	none	Trinity_GG_8404_c0_g1_i2,blat.proc3829877.chain_3702	2	STRG.15249.1,Trinity_GG_8404_c0_g1_i1,blat.proc3829877.chain_3703	3
scaffold_22	starts_in_intron	7578651	7578651	+	asmbl_29490	none	Trinity_GG_13892_c1_g1_i1,blat.proc3829883.chain_2153	2	STRG.25082.1,Trinity_GG_13892_c1_g1_i2,blat.proc3829883.chain_2152	3
scaffold_14	spliced_intron	1070202	1070398	+	asmbl_11764	none	STRG.16754.4	1	STRG.16754.3,Trinity_GG_9205_c0_g1_i3,blat.proc3829879.chain_1437,blat.proc3829879.chain_1439,blat.proc3829879.chain_1440,blat.proc3829879.chain_1442	6
scaffold_4	alt_acceptor	13807153	13807154	+	asmbl_43159	none	STRG.5000.2,blat.proc3829873.chain_1341	2	STRG.5000.1,blat.proc3829873.chain_1342	2
scaffold_28	ends_in_intron	2267464	2267464	-	asmbl_37352	none	blat.proc3829901.chain_2466	1	STRG.29380.1,STRG.29380.2,STRG.29380.3,Trinity_GG_33458_c0_g1_i4,blat.proc3829901.chain_2467,blat.proc3829901.chain_2468,blat.proc3829901.chain_2469,blat.proc3829901.chain_2470,blat.proc3829901.chain_2471	9
scaffold_13	alt_acceptor	89586	89587	+	asmbl_10430	none	blat.proc3829879.chain_81	1	STRG.15412.1,STRG.15412.2,STRG.15412.3,STRG.15412.4,blat.proc3829879.chain_80	5
scaffold_19	skipped_exon	9096219	9098178	+	asmbl_22372	none	STRG.22340.1,blat.proc3829881.chain_3244	2	STRG.22340.2	1
scaffold_25	spliced_intron	5625977	5626514	-	asmbl_34250	none	STRG.27446.1,Trinity_GG_32396_c0_g1_i1,blat.proc3829901.chain_765	3	STRG.27446.2,Trinity_GG_32396_c0_g1_i2,Trinity_GG_32396_c0_g1_i3,blat.proc3829901.chain_764,blat.proc3829901.chain_766	5
scaffold_10	retained_intron	5200984	5201075	-	asmbl_3264	none	blat.proc3829893.chain_802	1	STRG.12339.1,STRG.12339.2,blat.proc3829893.chain_799,blat.proc3829893.chain_801	4
scaffold_1	alt_acceptor	3681281	3681282	+	asmbl_1627	none	blat.proc3829871.chain_292	1	STRG.237.3	1
scaffold_20	retained_intron	12074998	12075218	-	asmbl_27144	none	blat.proc3829899.chain_692	1	STRG.23691.1,blat.proc3829899.chain_688,blat.proc3829899.chain_690	3
scaffold_9	alt_donor	16384756	16384757	+	asmbl_54569	none	STRG.11784.1,blat.proc3829877.chain_531	2	STRG.11784.2,blat.proc3829877.chain_532	2
scaffold_17	starts_in_intron	6786016	6786016	-	asmbl_19027	none	blat.proc3829897.chain_1281	1	STRG.20317.1,blat.proc3829897.chain_1282	2
scaffold_26	alt_acceptor	4115532	4115533	+	asmbl_35392	none	STRG.28097.2	1	STRG.28097.1,Trinity_GG_15503_c0_g1_i2,blat.proc3829885.chain_1069	3
scaffold_27	alternate_exon	3054770	3054965	+	asmbl_36139	none	STRG.28771.2,blat.proc3829885.chain_1851	2	STRG.28771.1,blat.proc3829885.chain_1852	2
scaffold_11	spliced_intron	13252911	13254374	-	asmbl_7104	none	STRG.14183.2,blat.proc3829893.chain_2645	2	STRG.14183.1,blat.proc3829893.chain_2646	2
scaffold_6	retained_intron	11668222	11669586	+	asmbl_47294	none	Trinity_GG_4350_c0_g1_i1,blat.proc3829875.chain_326	2	STRG.7953.1,Trinity_GG_4350_c0_g1_i2,blat.proc3829875.chain_325	3
scaffold_5	retained_intron	9079063	9079449	-	asmbl_45646	none	blat.proc3829889.chain_2315	1	STRG.6236.1,Trinity_GG_20527_c0_g1_i1,blat.proc3829889.chain_2314	3
scaffold_11	ends_in_intron	3518018	3518018	+	asmbl_5404	none	STRG.13473.1	1	STRG.13473.4	1
scaffold_1	starts_in_intron	5606797	5606797	-	asmbl_280	none	blat.proc3829887.chain_232	1	STRG.346.1,Trinity_GG_17204_c0_g1_i2,Trinity_GG_17204_c0_g1_i3,blat.proc3829887.chain_230,blat.proc3829887.chain_231	5
scaffold_13	starts_in_intron	11540919	11540919	+	asmbl_11258	none	Trinity_GG_8958_c0_g1_i4,blat.proc3829879.chain_1040	2	STRG.16290.1,Trinity_GG_8958_c0_g1_i2,blat.proc3829879.chain_1037,blat.proc3829879.chain_1038,blat.proc3829879.chain_1041	5
scaffold_13	starts_in_intron	9255479	9255479	+	asmbl_11173	none	Trinity_GG_8857_c1_g1_i1,blat.proc3829879.chain_849	2	STRG.16172.1,Trinity_GG_8857_c1_g1_i3,Trinity_GG_8857_c1_g1_i4,blat.proc3829879.chain_847,blat.proc3829879.chain_848	5
scaffold_10	starts_in_intron	4261010	4261010	+	asmbl_4396	none	STRG.12255.2	1	STRG.12255.1	1
scaffold_20	starts_in_intron	10385761	10385761	+	asmbl_26111	none	Trinity_GG_12979_c0_g1_i4,blat.proc3829883.chain_589	2	STRG.23569.1,STRG.23569.2,STRG.23569.3,STRG.23569.5,Trinity_GG_12979_c0_g1_i2,Trinity_GG_12979_c0_g1_i5,Trinity_GG_12979_c0_g1_i6,blat.proc3829883.chain_590,blat.proc3829883.chain_591,blat.proc3829883.chain_592,blat.proc3829883.chain_594	11
scaffold_10	retained_exon	4131738	4131755	-	asmbl_3175,asmbl_3176	none	STRG.12241.2,blat.proc3829893.chain_640	2	STRG.12241.1,blat.proc3829893.chain_642	2
scaffold_17	alternate_exon	543865	543908	+	asmbl_17680	none	STRG.19891.2	1	STRG.19891.1,STRG.19891.3,Trinity_GG_10901_c0_g1_i2,blat.proc3829881.chain_737	4
scaffold_1	retained_exon	10414945	10415039	-	asmbl_592	none	STRG.680.1,blat.proc3829887.chain_609	2	STRG.680.2,blat.proc3829887.chain_608	2
scaffold_8	alternate_exon	16083789	16083895	-	asmbl_53364	none	STRG.10584.1,blat.proc3829891.chain_2681	2	STRG.10584.2,STRG.10584.3,blat.proc3829891.chain_2680	3
scaffold_16	retained_intron	433763	434014	-	asmbl_16044,asmbl_16045,asmbl_16046,asmbl_16050,asmbl_16051	none	blat.proc3829897.chain_17,blat.proc3829897.chain_18,blat.proc3829897.chain_19,blat.proc3829897.chain_23,blat.proc3829897.chain_24	5	blat.proc3829897.chain_20	1
scaffold_5	spliced_intron	14261932	14262734	+	asmbl_44590	none	blat.proc3829873.chain_2769	1	STRG.6629.3,blat.proc3829873.chain_2762,blat.proc3829873.chain_2771	3
scaffold_13	alternate_exon	1336063	1336111	+	asmbl_10532	none	STRG.15489.2,Trinity_GG_8537_c0_g1_i1,blat.proc3829879.chain_229	3	STRG.15489.1,blat.proc3829879.chain_230	2
scaffold_22	retained_intron	4377962	4378747	+	asmbl_29293	none	STRG.24842.2,Trinity_GG_13732_c0_g1_i1,blat.proc3829883.chain_1875	3	STRG.24842.1,Trinity_GG_13732_c0_g1_i2,blat.proc3829883.chain_1876	3
scaffold_22	starts_in_intron	10944311	10944311	-	asmbl_30403	none	blat.proc3829899.chain_2454	1	blat.proc3829899.chain_2453,blat.proc3829899.chain_2455	2
scaffold_16	spliced_intron	116383	116577	+	asmbl_16783	none	STRG.18990.1,Trinity_GG_10418_c0_g1_i2,blat.proc3829879.chain_3614,blat.proc3829879.chain_3615	4	Trinity_GG_10418_c1_g1_i1,blat.proc3829879.chain_3616	2
scaffold_22	skipped_exon	483798	485440	+	asmbl_29150	none	STRG.24679.2	1	STRG.24679.1,blat.proc3829883.chain_1725	2
scaffold_19	alt_acceptor	5637100	5637101	-	asmbl_21388,asmbl_21389,asmbl_21390	none	blat.proc3829897.chain_2910,blat.proc3829897.chain_2911,blat.proc3829897.chain_2913	3	blat.proc3829897.chain_2914	1
scaffold_18	spliced_intron	1893653	1894712	-	asmbl_19690,asmbl_19696,asmbl_19697,asmbl_19698,asmbl_19703,asmbl_19704,asmbl_19705,asmbl_19706	none	blat.proc3829897.chain_1890,blat.proc3829897.chain_1891,blat.proc3829897.chain_1893,blat.proc3829897.chain_1895,blat.proc3829897.chain_1897,blat.proc3829897.chain_1898,blat.proc3829897.chain_1899,blat.proc3829897.chain_1901,blat.proc3829897.chain_1902	9	STRG.21072.1,STRG.21072.10,STRG.21072.3,STRG.21072.5,STRG.21072.7,STRG.21072.8,STRG.21072.9,blat.proc3829897.chain_1896	8
scaffold_13	spliced_intron	1229434	1229825	+	asmbl_10518	none	STRG.15478.2	1	STRG.15478.1,STRG.15478.3,Trinity_GG_8526_c1_g1_i2,Trinity_GG_8526_c4_g1_i1,blat.proc3829879.chain_211,blat.proc3829879.chain_214	6
scaffold_17	spliced_intron	7006596	7009068	-	asmbl_19058,asmbl_19060	none	STRG.20351.1,STRG.20351.2,blat.proc3829897.chain_1273,blat.proc3829897.chain_1274	4	blat.proc3829897.chain_1272,blat.proc3829897.chain_1275	2
scaffold_4	ends_in_intron	12341688	12341688	-	asmbl_41645	none	blat.proc3829889.chain_933	1	STRG.4867.1,STRG.4867.2,blat.proc3829889.chain_934	3
scaffold_3	skipped_exon	7408578	7410004	-	asmbl_38917	none	STRG.3339.2,blat.proc3829887.chain_3095	2	STRG.3339.1,blat.proc3829887.chain_3096	2
scaffold_6	skipped_exon	19115800	19116587	-	asmbl_49236	none	STRG.8568.5	1	STRG.8568.1,Trinity_GG_21904_c0_g1_i3,blat.proc3829891.chain_897	3
scaffold_20	spliced_intron	253640	253910	-	asmbl_26411	none	STRG.22706.2	1	STRG.22706.1	1
scaffold_18	ends_in_intron	5991314	5991314	+	asmbl_20681	none	blat.proc3829881.chain_2210	1	blat.proc3829881.chain_2205,blat.proc3829881.chain_2206,blat.proc3829881.chain_2207,blat.proc3829881.chain_2208,blat.proc3829881.chain_2209,blat.proc3829881.chain_2211,blat.proc3829881.chain_2212	7
scaffold_11	alt_donor	11594060	11594061	+	asmbl_5941	none	STRG.14075.1,Trinity_GG_7776_c0_g1_i2,blat.proc3829877.chain_2591	3	Trinity_GG_7776_c0_g1_i1,blat.proc3829877.chain_2590	2
scaffold_2	retained_intron	948733	948885	+	asmbl_24187	none	STRG.1574.1,blat.proc3829871.chain_1645	2	STRG.1574.2,STRG.1574.3,blat.proc3829871.chain_1649	3
scaffold_16	alt_acceptor	8506880	8506881	-	asmbl_16423	none	STRG.19466.1	1	Trinity_GG_27944_c0_g1_i2,blat.proc3829897.chain_504	2
scaffold_25	alt_acceptor	434699	434700	+	asmbl_33323	none	Trinity_GG_14952_c0_g1_i1,blat.proc3829885.chain_181	2	STRG.27069.1,blat.proc3829885.chain_180	2
scaffold_14	spliced_intron	6427617	6427975	-	asmbl_13110	none	STRG.17075.1,blat.proc3829895.chain_1774	2	blat.proc3829895.chain_1775	1
scaffold_10	alternate_exon	10283206	10284583	-	asmbl_3616	none	STRG.12709.3,blat.proc3829893.chain_1236	2	STRG.12709.2	1
scaffold_18	retained_intron	8863627	8864527	-	asmbl_20063	none	Trinity_GG_29045_c0_g1_i9,blat.proc3829897.chain_2355	2	STRG.21541.1,STRG.21541.2,STRG.21541.3,blat.proc3829897.chain_2356,blat.proc3829897.chain_2357,blat.proc3829897.chain_2358,blat.proc3829897.chain_2359,blat.proc3829897.chain_2360,blat.proc3829897.chain_2362	9
scaffold_7	skipped_exon	15316590	15317879	-	asmbl_50188	none	STRG.9540.3	1	STRG.9540.2,Trinity_GG_22371_c0_g1_i1,blat.proc3829891.chain_1774,blat.proc3829891.chain_1775	4
scaffold_3	alternate_exon	12579182	12580666	+	asmbl_40364	none	STRG.3651.1,blat.proc3829873.chain_67	2	blat.proc3829873.chain_68	1
scaffold_27	alt_donor	638591	638592	-	asmbl_36661	none	Trinity_GG_32989_c1_g1_i5,blat.proc3829901.chain_1762	2	STRG.28565.1,Trinity_GG_32989_c1_g1_i6,blat.proc3829901.chain_1761	3
scaffold_21	alternate_exon	6512237	6512839	+	asmbl_28679	none	blat.proc3829883.chain_1335	1	blat.proc3829883.chain_1337	1
scaffold_2	retained_intron	11610034	11610204	+	asmbl_24794,asmbl_24795,asmbl_24798	none	STRG.2273.1,STRG.2273.2,blat.proc3829871.chain_2297,blat.proc3829871.chain_2298,blat.proc3829871.chain_2300,blat.proc3829871.chain_2302,blat.proc3829871.chain_2303	7	STRG.2273.3,blat.proc3829871.chain_2299,blat.proc3829871.chain_2301	3
scaffold_15	alt_acceptor	12304512	12304513	+	asmbl_14493	none	STRG.18670.2,Trinity_GG_10243_c0_g1_i1,blat.proc3829879.chain_3251	3	STRG.18670.1,Trinity_GG_10243_c0_g1_i2,blat.proc3829879.chain_3250	3
scaffold_20	retained_intron	7806737	7806925	-	asmbl_26845	none	Trinity_GG_30035_c0_g1_i3,blat.proc3829899.chain_370	2	STRG.23317.1,Trinity_GG_30035_c0_g1_i1,Trinity_GG_30035_c0_g1_i2,blat.proc3829899.chain_371,blat.proc3829899.chain_372	5
scaffold_17	retained_intron	9428864	9428984	+	asmbl_18205	none	Trinity_GG_11265_c0_g1_i1,blat.proc3829881.chain_1375	2	STRG.20552.1,blat.proc3829881.chain_1376	2
scaffold_25	spliced_intron	6303553	6303774	+	asmbl_33607,asmbl_33608,asmbl_33610,asmbl_33613,asmbl_33614	none	STRG.27516.1,blat.proc3829885.chain_464,blat.proc3829885.chain_465,blat.proc3829885.chain_471,blat.proc3829885.chain_472,blat.proc3829885.chain_474	6	blat.proc3829885.chain_467,blat.proc3829885.chain_469,blat.proc3829885.chain_470,blat.proc3829885.chain_473	4
scaffold_12	starts_in_intron	11324410	11324410	+	asmbl_8927	none	STRG.15051.3	1	STRG.15051.1,STRG.15051.2,Trinity_GG_8310_c0_g1_i1,Trinity_GG_8310_c0_g1_i2,blat.proc3829877.chain_3549,blat.proc3829877.chain_3550	6
scaffold_13	retained_intron	6396106	6396423	+	asmbl_10907	none	STRG.15914.2,Trinity_GG_8718_c0_g1_i4,Trinity_GG_8718_c0_g1_i6,blat.proc3829879.chain_550,blat.proc3829879.chain_553	5	Trinity_GG_8718_c0_g1_i8,blat.proc3829879.chain_556	2
scaffold_5	alt_acceptor	8910806	8910807	-	asmbl_45638	none	STRG.6219.2,blat.proc3829889.chain_2263	2	STRG.6219.1,blat.proc3829889.chain_2262	2
scaffold_3	starts_in_intron	16945111	16945111	-	asmbl_39472	none	blat.proc3829889.chain_12	1	STRG.3938.1	1
scaffold_16	spliced_intron	15229002	15229042	+	asmbl_17526	none	STRG.19866.4	1	STRG.19866.1,STRG.19866.3	2
scaffold_27	ends_in_intron	9916950	9916950	+	asmbl_36498	none	blat.proc3829885.chain_2334	1	blat.proc3829885.chain_2332	1
scaffold_2	spliced_intron	11610034	11610204	+	asmbl_24796,asmbl_24799	none	STRG.2273.3,blat.proc3829871.chain_2299,blat.proc3829871.chain_2301	3	STRG.2273.1,STRG.2273.2,blat.proc3829871.chain_2297,blat.proc3829871.chain_2298,blat.proc3829871.chain_2300,blat.proc3829871.chain_2302,blat.proc3829871.chain_2303	7
scaffold_15	alt_acceptor	12870883	12870884	-	asmbl_15624	none	STRG.18726.1,Trinity_GG_27526_c0_g1_i1,blat.proc3829895.chain_3490	3	STRG.18726.2	1
scaffold_3	retained_exon	9844427	9844973	-	asmbl_39025	none	STRG.3457.1,blat.proc3829887.chain_3245	2	STRG.3457.2,blat.proc3829887.chain_3242	2
scaffold_18	ends_in_intron	5584792	5584792	-	asmbl_19904	none	blat.proc3829897.chain_2193	1	STRG.21304.1,STRG.21304.2,Trinity_GG_28951_c1_g1_i4,blat.proc3829897.chain_2182,blat.proc3829897.chain_2194,blat.proc3829897.chain_2195	6
scaffold_16	alt_acceptor	6143790	6143791	+	asmbl_17069,asmbl_17070,asmbl_17072,asmbl_17073,asmbl_17074,asmbl_17075,asmbl_17077	none	STRG.19342.1,STRG.19342.2,STRG.19342.3,blat.proc3829881.chain_208,blat.proc3829881.chain_209,blat.proc3829881.chain_210,blat.proc3829881.chain_212,blat.proc3829881.chain_214	8	STRG.19342.4	1
scaffold_8	starts_in_intron	9123205	9123205	-	asmbl_53000	none	STRG.10160.3,blat.proc3829891.chain_2328	2	STRG.10160.1,STRG.10160.2,STRG.10160.4,blat.proc3829891.chain_2327,blat.proc3829891.chain_2330	5
scaffold_15	retained_intron	13324710	13324894	+	asmbl_14574,asmbl_14577,asmbl_14578,asmbl_14580	none	Trinity_GG_10264_c0_g1_i6,blat.proc3829879.chain_3296,blat.proc3829879.chain_3299,blat.proc3829879.chain_3302,blat.proc3829879.chain_3304	5	STRG.18763.1,Trinity_GG_10264_c0_g1_i2,Trinity_GG_10264_c0_g1_i4,blat.proc3829879.chain_3297,blat.proc3829879.chain_3298,blat.proc3829879.chain_3300,blat.proc3829879.chain_3301,blat.proc3829879.chain_3303	8
scaffold_23	alt_acceptor	5584100	5584101	+	asmbl_30885	none	STRG.25912.2	1	STRG.25912.1,STRG.25912.3,STRG.25912.4,Trinity_GG_14263_c0_g1_i1,blat.proc3829883.chain_2728,blat.proc3829883.chain_2729	6
scaffold_2	retained_intron	7775380	7775866	-	asmbl_23299	none	STRG.2074.3,blat.proc3829887.chain_1984	2	STRG.2074.1,STRG.2074.2,blat.proc3829887.chain_1981,blat.proc3829887.chain_1982	4
scaffold_94	spliced_intron	11162	11400	+	asmbl_55806	none	Trinity_GG_16638_c0_g1_i1,blat.proc3829885.chain_3117	2	Trinity_GG_16686_c0_g1_i2,blat.proc3829885.chain_3178,blat.proc3829901.chain_3159	3
scaffold_10	starts_in_intron	16531662	16531662	+	asmbl_4998	none	blat.proc3829901.chain_3269	1	STRG.13112.1,blat.proc3829877.chain_1619,blat.proc3829877.chain_1621	3
scaffold_6	starts_in_intron	14513154	14513154	-	asmbl_48947	none	blat.proc3829891.chain_522	1	STRG.8207.1,blat.proc3829891.chain_523	2
scaffold_6	alt_acceptor	9098570	9098571	+	asmbl_47137	none	STRG.7781.1,blat.proc3829875.chain_162	2	STRG.7781.2,STRG.7781.3	2
scaffold_14	alternate_exon	2380191	2380265	-	asmbl_12925	none	STRG.16839.9	1	STRG.16839.4,STRG.16839.7	2
scaffold_4	spliced_intron	16932301	16932423	-	asmbl_41989	none	STRG.5285.1	1	STRG.5285.2	1
scaffold_6	ends_in_intron	12820785	12820785	-	asmbl_48785	none	Trinity_GG_21576_c0_g1_i2,blat.proc3829891.chain_328	2	STRG.8032.1,blat.proc3829891.chain_327	2
scaffold_28	ends_in_intron	7721052	7721052	+	asmbl_38399	none	blat.proc3829885.chain_2925	1	STRG.29824.1,Trinity_GG_16523_c1_g1_i1,Trinity_GG_16523_c1_g1_i2,blat.proc3829885.chain_2922,blat.proc3829885.chain_2923,blat.proc3829885.chain_2926	6
scaffold_6	skipped_exon	10894193	10895417	+	asmbl_47240	none	STRG.7901.1,blat.proc3829875.chain_290	2	STRG.7901.2,blat.proc3829875.chain_292	2
scaffold_11	spliced_intron	38298	38788	+	asmbl_5211	none	blat.proc3829877.chain_1745	1	STRG.13224.3,Trinity_GG_7279_c0_g1_i2,blat.proc3829877.chain_1746	3
scaffold_25	starts_in_intron	3550584	3550584	-	asmbl_34119	none	blat.proc3829901.chain_587	1	STRG.27282.1,STRG.27282.2,blat.proc3829901.chain_586	3
scaffold_2	skipped_exon	6761551	6762100	-	asmbl_23257	none	STRG.2030.3,blat.proc3829887.chain_1918	2	STRG.2030.1,STRG.2030.2,STRG.2030.4,blat.proc3829887.chain_1919,blat.proc3829887.chain_1920	5
scaffold_25	alt_acceptor	2979615	2979616	-	asmbl_34069	none	STRG.27225.1,blat.proc3829901.chain_536	2	STRG.27225.2	1
scaffold_12	alternate_exon	12834921	12835101	-	asmbl_8026	none	STRG.15163.3	1	STRG.15163.1,STRG.15163.2,blat.proc3829893.chain_3561	3
scaffold_11	starts_in_intron	8085413	8085413	+	asmbl_5683	none	Trinity_GG_7566_c0_g1_i2,blat.proc3829877.chain_2220	2	STRG.13805.1	1
scaffold_10	ends_in_intron	13788474	13788474	+	asmbl_4895	none	STRG.12969.2	1	STRG.12969.1	1
scaffold_6	spliced_intron	8460271	8460401	+	asmbl_47062	none	STRG.7708.2,blat.proc3829875.chain_72	2	STRG.7708.1,STRG.7708.4,blat.proc3829875.chain_73	3
scaffold_17	starts_in_intron	2634311	2634311	+	asmbl_17802	none	Trinity_GG_10982_c0_g1_i1,blat.proc3829881.chain_877	2	STRG.20044.4,blat.proc3829881.chain_876	2
scaffold_8	ends_in_intron	16502429	16502429	-	asmbl_53409,asmbl_53410	none	Trinity_GG_22960_c0_g1_i24,Trinity_GG_22960_c0_g1_i9,blat.proc3829891.chain_2856,blat.proc3829891.chain_2858	4	STRG.10621.1,STRG.10621.2,STRG.10621.3,STRG.10621.4,STRG.10621.5,Trinity_GG_22960_c0_g1_i18,Trinity_GG_22960_c0_g1_i19,Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2857,blat.proc3829891.chain_2859,blat.proc3829891.chain_2860,blat.proc3829891.chain_2862,blat.proc3829891.chain_2863,blat.proc3829891.chain_2864,blat.proc3829891.chain_2865,blat.proc3829891.chain_2867,blat.proc3829891.chain_2868,blat.proc3829891.chain_2869,blat.proc3829891.chain_2870,blat.proc3829891.chain_2871,blat.proc3829891.chain_2872	25
scaffold_11	ends_in_intron	4867332	4867332	+	asmbl_5493	none	blat.proc3829877.chain_2062	1	STRG.13574.1,blat.proc3829877.chain_2061	2
scaffold_28	alt_donor	4203363	4203364	+	asmbl_38215	none	STRG.29593.1	1	STRG.29593.2	1
scaffold_5	alternate_exon	19031504	19034860	-	asmbl_46269	none	blat.proc3829889.chain_3003	1	STRG.7018.1	1
scaffold_11	retained_exon	4333202	4333222	-	asmbl_6575	none	STRG.13521.2	1	STRG.13521.1,blat.proc3829893.chain_1998,blat.proc3829893.chain_2001	3
scaffold_11	alternate_exon	4672820	4673035	-	asmbl_6589	none	Trinity_GG_24574_c0_g1_i1,blat.proc3829893.chain_1974	2	STRG.13547.2,STRG.13547.3,STRG.13547.5,blat.proc3829893.chain_1970,blat.proc3829893.chain_1971,blat.proc3829893.chain_1972	6
scaffold_1	starts_in_intron	14350273	14350273	-	asmbl_901	none	blat.proc3829887.chain_926	1	STRG.1030.1,STRG.1030.2,blat.proc3829887.chain_924,blat.proc3829887.chain_925,blat.proc3829887.chain_927,blat.proc3829887.chain_928	6
scaffold_13	spliced_intron	5701364	5701646	-	asmbl_9669,asmbl_9670	none	STRG.15859.1,blat.proc3829895.chain_597,blat.proc3829895.chain_598	3	STRG.15859.2,Trinity_GG_25916_c0_g1_i7,blat.proc3829895.chain_600	3
scaffold_19	retained_exon	10851587	10851622	-	asmbl_21572	none	STRG.22416.1	1	STRG.22416.2,Trinity_GG_29441_c0_g1_i3,blat.proc3829897.chain_3024	3
scaffold_21	spliced_intron	4967429	4967605	-	asmbl_27627	none	STRG.24031.1,blat.proc3829899.chain_1095,blat.proc3829899.chain_1097	3	blat.proc3829899.chain_1096	1
scaffold_12	starts_in_intron	4722841	4722841	-	asmbl_7567,asmbl_7568	none	STRG.14636.2,blat.proc3829893.chain_3004	2	STRG.14636.1	1
scaffold_8	retained_exon	7306416	7306517	-	asmbl_52888	none	STRG.10055.1,blat.proc3829891.chain_2137	2	STRG.10055.2,blat.proc3829891.chain_2138	2
scaffold_26	alt_acceptor	133258	133259	-	asmbl_34647	none	STRG.27819.1,blat.proc3829901.chain_1098	2	blat.proc3829901.chain_1099	1
scaffold_11	starts_in_intron	6252374	6252374	+	asmbl_5590	none	blat.proc3829877.chain_2181	1	STRG.13670.2,Trinity_GG_7547_c0_g1_i2,Trinity_GG_7547_c0_g1_i9,blat.proc3829877.chain_2179,blat.proc3829877.chain_2183	5
scaffold_8	starts_in_intron	16385527	16385527	+	asmbl_52443	none	Trinity_GG_5913_c0_g1_i5,blat.proc3829875.chain_3145	2	STRG.10611.1,STRG.10611.2,STRG.10611.3,Trinity_GG_5913_c0_g1_i2,Trinity_GG_5913_c0_g1_i3,Trinity_GG_5913_c0_g1_i4,blat.proc3829875.chain_3141,blat.proc3829875.chain_3143,blat.proc3829875.chain_3144	9
scaffold_11	alt_acceptor	5922918	5922919	+	asmbl_5558	none	STRG.13651.2	1	STRG.13651.1,blat.proc3829877.chain_2072,blat.proc3829877.chain_2073	3
scaffold_21	alternate_exon	4106775	4106937	+	asmbl_28526,asmbl_28529	none	STRG.23973.2,STRG.23973.3,blat.proc3829883.chain_1131	3	STRG.23973.1	1
scaffold_15	retained_intron	12000050	12000366	-	asmbl_15567,asmbl_15568	none	blat.proc3829895.chain_3417,blat.proc3829895.chain_3421	2	STRG.18630.2,Trinity_GG_27487_c0_g1_i7,blat.proc3829895.chain_3420	3
scaffold_5	skipped_exon	992426	993796	+	asmbl_43771,asmbl_43772	none	STRG.5645.2,blat.proc3829873.chain_1820,blat.proc3829873.chain_1821	3	STRG.5645.1	1
scaffold_13	retained_intron	7655808	7655891	+	asmbl_11050	none	blat.proc3829879.chain_778	1	STRG.16039.1,blat.proc3829879.chain_775,blat.proc3829879.chain_779,blat.proc3829879.chain_780,blat.proc3829879.chain_781	5
scaffold_12	starts_in_intron	14104305	14104305	-	asmbl_8110	none	blat.proc3829893.chain_3676	1	STRG.15225.1,Trinity_GG_25546_c0_g1_i1,Trinity_GG_25546_c0_g1_i2,Trinity_GG_25546_c0_g1_i5,Trinity_GG_25546_c0_g1_i8,blat.proc3829893.chain_3674,blat.proc3829893.chain_3675,blat.proc3829893.chain_3677,blat.proc3829893.chain_3678,blat.proc3829893.chain_3679,blat.proc3829893.chain_3680,blat.proc3829893.chain_3682	12
scaffold_25	alternate_exon	3685591	3687106	+	asmbl_33448,asmbl_33449	none	STRG.27297.1,blat.proc3829885.chain_327,blat.proc3829885.chain_328	3	STRG.27297.3	1
scaffold_11	alternate_exon	11045514	11045592	-	asmbl_6992	none	STRG.14055.1	1	STRG.14055.2,STRG.14055.3	2
scaffold_3	alternate_exon	3244021	3249029	+	asmbl_39898	none	STRG.3087.4,Trinity_GG_1771_c0_g1_i6,blat.proc3829871.chain_3308	3	STRG.3087.6,Trinity_GG_1771_c2_g1_i1,blat.proc3829871.chain_3313	3
scaffold_6	skipped_exon	2480100	2482402	-	asmbl_48079	none	STRG.7236.3	1	STRG.7236.1,blat.proc3829889.chain_3219,blat.proc3829889.chain_3220	3
scaffold_1	starts_in_intron	8426547	8426547	+	asmbl_1927	none	blat.proc3829871.chain_615	1	STRG.551.1	1
scaffold_14	alternate_exon	9499931	9500122	+	asmbl_12268	none	STRG.17327.1,Trinity_GG_9540_c1_g1_i2,blat.proc3829879.chain_2059	3	STRG.17327.2	1
scaffold_13	alternate_exon	366022	366456	-	asmbl_9282	none	Trinity_GG_25666_c0_g1_i3,blat.proc3829895.chain_165	2	STRG.15426.4,Trinity_GG_25666_c0_g1_i10,blat.proc3829895.chain_156	3
scaffold_13	retained_intron	6602967	6603353	-	asmbl_9762	none	STRG.15934.1,blat.proc3829895.chain_720	2	STRG.15934.2,blat.proc3829895.chain_721	2
scaffold_12	ends_in_intron	12451865	12451865	+	asmbl_8973	none	blat.proc3829877.chain_3557	1	STRG.15137.4	1
scaffold_28	alt_donor	8908690	8908691	-	asmbl_37816	none	STRG.29929.1,blat.proc3829901.chain_3038	2	STRG.29929.2,Trinity_GG_33789_c0_g1_i1,blat.proc3829901.chain_3039	3
scaffold_27	ends_in_intron	1550482	1550482	+	asmbl_35983	none	Trinity_GG_15852_c0_g1_i1,blat.proc3829885.chain_1671	2	STRG.28623.1,STRG.28623.2,Trinity_GG_15852_c0_g1_i3,Trinity_GG_15852_c0_g1_i5,blat.proc3829885.chain_1669,blat.proc3829885.chain_1670	6
scaffold_2	alternate_exon	17976840	17976925	+	asmbl_25249	none	STRG.2688.1	1	STRG.2688.2,blat.proc3829871.chain_2904	2
scaffold_15	starts_in_intron	6883726	6883726	-	asmbl_15277,asmbl_15284	none	Trinity_GG_27246_c0_g1_i4,blat.proc3829895.chain_2938,blat.proc3829895.chain_2941	3	STRG.18290.2,STRG.18290.3,STRG.18290.4,Trinity_GG_27246_c0_g1_i5,blat.proc3829895.chain_2934,blat.proc3829895.chain_2935,blat.proc3829895.chain_2936,blat.proc3829895.chain_2940	8
scaffold_8	spliced_intron	11810388	11810529	+	asmbl_52255,asmbl_52257	none	STRG.10378.1,blat.proc3829875.chain_2926,blat.proc3829875.chain_2927	3	blat.proc3829875.chain_2928	1
scaffold_10	spliced_intron	13300842	13301043	+	asmbl_4863,asmbl_4865	none	STRG.12927.1,blat.proc3829877.chain_1482,blat.proc3829877.chain_1484	3	blat.proc3829877.chain_1483	1
scaffold_20	spliced_intron	1754144	1754287	+	asmbl_25605	none	STRG.22907.2,Trinity_GG_12636_c0_g1_i2,blat.proc3829883.chain_55	3	STRG.22907.1,STRG.22907.4,blat.proc3829883.chain_56	3
scaffold_5	spliced_intron	19444958	19445069	-	asmbl_46289	none	STRG.7035.1,Trinity_GG_20923_c0_g1_i2,blat.proc3829889.chain_3015	3	STRG.7035.2,Trinity_GG_20923_c0_g1_i1,blat.proc3829889.chain_3014	3
scaffold_11	retained_intron	5868618	5868758	-	asmbl_6662,asmbl_6664	none	STRG.13641.3,blat.proc3829893.chain_2102,blat.proc3829893.chain_2104	3	STRG.13641.2,blat.proc3829893.chain_2103	2
scaffold_10	alt_acceptor	3421265	3421266	-	asmbl_3119	none	STRG.12164.1,blat.proc3829893.chain_629	2	STRG.12164.2,blat.proc3829893.chain_630	2
scaffold_20	retained_intron	10249426	10249538	-	asmbl_27022	none	blat.proc3829899.chain_557	1	STRG.23558.1,blat.proc3829899.chain_558	2
scaffold_16	ends_in_intron	7230742	7230742	-	asmbl_16350	none	STRG.19382.8,blat.proc3829897.chain_417	2	STRG.19382.1,STRG.19382.3,STRG.19382.6,STRG.19382.7	4
scaffold_22	alt_donor	719928	719929	-	asmbl_29886	none	STRG.24708.2,Trinity_GG_30788_c0_g1_i2,blat.proc3829899.chain_1769	3	STRG.24708.1,Trinity_GG_30788_c0_g1_i1,blat.proc3829899.chain_1768	3
scaffold_11	ends_in_intron	3181827	3181827	+	asmbl_5367	none	STRG.13436.1	1	Trinity_GG_7361_c0_g1_i1,blat.proc3829877.chain_1893	2
scaffold_16	starts_in_intron	4020860	4020860	-	asmbl_16208	none	blat.proc3829897.chain_141	1	STRG.19206.1,blat.proc3829897.chain_142	2
scaffold_3	alternate_exon	19802481	19802509	+	asmbl_40730,asmbl_40731	none	STRG.4094.2,STRG.4094.3	2	blat.proc3829873.chain_436	1
scaffold_10	alternate_exon	11970269	11971460	+	asmbl_4790	none	Trinity_GG_7032_c0_g1_i9,blat.proc3829877.chain_1317	2	STRG.12831.3	1
scaffold_8	alternate_exon	16504948	16517926	-	asmbl_53427,asmbl_53428,asmbl_53429	none	STRG.10621.3,STRG.10621.4,STRG.10621.5	3	Trinity_GG_22960_c0_g1_i9,blat.proc3829891.chain_2858	2
scaffold_9	spliced_intron	17851854	17852001	+	asmbl_54631,asmbl_54633	none	STRG.11860.1,Trinity_GG_6607_c0_g1_i6,blat.proc3829877.chain_589	3	STRG.11860.3,Trinity_GG_6607_c0_g1_i9,blat.proc3829877.chain_588	3
scaffold_1	retained_exon	4239039	4239871	+	asmbl_1642,asmbl_1650,asmbl_1652,asmbl_1654	none	STRG.253.2,blat.proc3829871.chain_224,blat.proc3829871.chain_227,blat.proc3829871.chain_230,blat.proc3829871.chain_233	5	STRG.253.1,blat.proc3829871.chain_225,blat.proc3829871.chain_229	3
scaffold_3	alternate_exon	6183003	6183322	-	asmbl_38862	none	STRG.3262.2,Trinity_GG_18794_c1_g2_i1,blat.proc3829887.chain_3016	3	STRG.3262.1,blat.proc3829887.chain_3017	2
scaffold_9	ends_in_intron	2798945	2798945	+	asmbl_53846	none	blat.proc3829875.chain_3366	1	STRG.10912.1,STRG.10912.2,Trinity_GG_6054_c0_g1_i2,Trinity_GG_6054_c0_g1_i7,blat.proc3829875.chain_3367,blat.proc3829875.chain_3369,blat.proc3829875.chain_3372	7
scaffold_19	alt_acceptor	6372371	6372372	-	asmbl_21412,asmbl_21413	none	STRG.22145.1,blat.proc3829897.chain_2863,blat.proc3829897.chain_2864	3	STRG.22145.2	1
scaffold_13	retained_intron	394206	395582	-	asmbl_9305,asmbl_9312,asmbl_9313	none	Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i25,Trinity_GG_25691_c0_g1_i7,blat.proc3829895.chain_223,blat.proc3829895.chain_229,blat.proc3829895.chain_232	6	STRG.15428.3,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_221,blat.proc3829895.chain_224	5
scaffold_1	spliced_intron	15888360	15889037	+	asmbl_2437	none	Trinity_GG_643_c0_g1_i2,blat.proc3829871.chain_1171	2	STRG.1117.2,blat.proc3829871.chain_1169	2
scaffold_17	spliced_intron	1292002	1292412	-	asmbl_18725	none	STRG.19952.1,blat.proc3829897.chain_840	2	STRG.19952.5,blat.proc3829897.chain_841	2
scaffold_19	alt_donor	726645	726646	+	asmbl_22004,asmbl_22005,asmbl_22006	none	STRG.21851.2,STRG.21851.3,STRG.21851.4	3	STRG.21851.1	1
scaffold_4	alt_donor	12789031	12789032	+	asmbl_43083,asmbl_43085	none	STRG.4920.2,STRG.4920.3,blat.proc3829873.chain_1275	3	STRG.4920.1,blat.proc3829873.chain_1273	2
scaffold_9	retained_intron	11836844	11837012	-	asmbl_55287,asmbl_55288,asmbl_55290,asmbl_55291	none	STRG.11489.2,STRG.11489.3,blat.proc3829891.chain_3600,blat.proc3829891.chain_3601,blat.proc3829891.chain_3603,blat.proc3829891.chain_3605	6	STRG.11489.1,blat.proc3829891.chain_3602,blat.proc3829891.chain_3604	3
scaffold_20	alt_acceptor	1126356	1126357	-	asmbl_26475	none	blat.proc3829897.chain_3595	1	STRG.22810.1	1
scaffold_13	retained_exon	7504556	7504603	-	asmbl_9845,asmbl_9846,asmbl_9851	none	STRG.16034.2,STRG.16034.5,Trinity_GG_26030_c0_g1_i9,blat.proc3829895.chain_820	4	Trinity_GG_26030_c0_g1_i10,blat.proc3829895.chain_816	2
scaffold_10	starts_in_intron	13285586	13285586	-	asmbl_3776	none	Trinity_GG_24247_c0_g1_i1	1	STRG.12910.4,blat.proc3829893.chain_1433,blat.proc3829893.chain_1435	3
scaffold_24	alternate_exon	8698802	8698945	+	asmbl_32440	none	STRG.26862.2	1	STRG.26862.1,blat.proc3829883.chain_3742	2
scaffold_28	alt_acceptor	3293109	3293110	-	asmbl_37469	none	STRG.29524.1,blat.proc3829901.chain_2629	2	STRG.29524.2,STRG.29524.3,blat.proc3829901.chain_2630	3
scaffold_7	alt_acceptor	4915924	4915925	+	asmbl_50644	none	STRG.8828.2	1	STRG.8828.4	1
scaffold_20	starts_in_intron	3713639	3713639	+	asmbl_25691	none	Trinity_GG_12704_c0_g1_i1,blat.proc3829883.chain_152	2	STRG.23058.1,STRG.23058.2,blat.proc3829883.chain_155	3
scaffold_25	retained_intron	7803694	7803782	-	asmbl_34379	none	blat.proc3829901.chain_897	1	STRG.27583.1,blat.proc3829901.chain_898	2
scaffold_24	alt_acceptor	7204229	7204230	+	asmbl_32383	none	STRG.26750.2	1	STRG.26750.1	1
scaffold_6	retained_intron	1345974	1346244	-	asmbl_48041	none	STRG.7176.1,Trinity_GG_21023_c0_g1_i3,blat.proc3829889.chain_3157,blat.proc3829889.chain_3158	4	STRG.7176.2,STRG.7176.3,blat.proc3829889.chain_3156	3
scaffold_17	spliced_intron	1291368	1292422	-	asmbl_18727,asmbl_18729	none	STRG.19952.3,blat.proc3829897.chain_836,blat.proc3829897.chain_838	3	STRG.19952.5,blat.proc3829897.chain_841	2
scaffold_9	starts_in_intron	9451062	9451062	-	asmbl_55141	none	Trinity_GG_23271_c0_g1_i2,blat.proc3829891.chain_3443	2	STRG.11292.1,blat.proc3829891.chain_3442	2
scaffold_26	alt_donor	3428071	3428072	-	asmbl_34766	none	STRG.28004.2,blat.proc3829901.chain_1239	2	STRG.28004.1,blat.proc3829901.chain_1238	2
scaffold_10	starts_in_intron	166359	166359	+	asmbl_4130	none	Trinity_GG_6619_c0_g1_i2,blat.proc3829877.chain_609	2	STRG.11898.1,blat.proc3829877.chain_608	2
scaffold_17	alternate_exon	9022488	9022719	-	asmbl_19183	none	blat.proc3829897.chain_1466	1	STRG.20518.1	1
scaffold_16	starts_in_intron	7704350	7704350	-	asmbl_16370	none	blat.proc3829897.chain_367	1	STRG.19406.1,blat.proc3829897.chain_365,blat.proc3829897.chain_366	3
scaffold_10	retained_intron	3757724	3757878	-	asmbl_3134,asmbl_3136	none	STRG.12200.1,STRG.12200.2	2	STRG.12200.4	1
scaffold_7	starts_in_intron	8507408	8507408	+	asmbl_50884,asmbl_50885	none	STRG.9068.5,Trinity_GG_5034_c0_g1_i6,blat.proc3829875.chain_1531	3	STRG.9068.1,STRG.9068.2,STRG.9068.4,blat.proc3829875.chain_1525,blat.proc3829875.chain_1526,blat.proc3829875.chain_1527	6
scaffold_22	alt_donor	5934298	5934299	+	asmbl_29365	none	STRG.24924.1	1	STRG.24924.2	1
scaffold_10	alt_acceptor	3922239	3922240	+	asmbl_4370	none	blat.proc3829877.chain_902	1	blat.proc3829877.chain_903	1
scaffold_6	alt_acceptor	17523319	17523320	+	asmbl_47700	none	STRG.8451.1,blat.proc3829875.chain_843	2	STRG.8451.3	1
scaffold_16	alt_donor	15174350	15174351	+	asmbl_17519	none	Trinity_GG_10881_c0_g1_i1,blat.proc3829881.chain_710	2	STRG.19865.1,STRG.19865.2,Trinity_GG_10881_c0_g1_i2,blat.proc3829881.chain_709	4
scaffold_28	retained_exon	7234724	7234744	+	asmbl_38340	none	blat.proc3829885.chain_2856	1	STRG.29763.1,blat.proc3829885.chain_2858	2
scaffold_23	retained_intron	2585219	2585676	-	asmbl_31463	none	Trinity_GG_31351_c1_g1_i6	1	STRG.25705.1,STRG.25705.2,STRG.25705.5,Trinity_GG_31351_c1_g1_i4,blat.proc3829899.chain_2749,blat.proc3829899.chain_2751,blat.proc3829899.chain_2752	7
scaffold_11	alt_donor	1824791	1824792	-	asmbl_6426	none	STRG.13331.1	1	STRG.13331.2	1
scaffold_6	starts_in_intron	3820523	3820523	+	asmbl_46815	none	STRG.7376.2,Trinity_GG_4024_c1_g1_i1,blat.proc3829873.chain_3467	3	STRG.7376.1,blat.proc3829873.chain_3465	2
scaffold_27	spliced_intron	6482619	6483087	-	asmbl_37013	none	STRG.29006.2	1	STRG.29006.1,blat.proc3829901.chain_2183,blat.proc3829901.chain_2184	3
scaffold_13	alt_donor	272420	272421	+	asmbl_10439	none	blat.proc3829879.chain_127	1	STRG.15416.2,STRG.15416.3,blat.proc3829879.chain_124	3
scaffold_21	retained_exon	8278464	8278547	+	asmbl_28820	none	STRG.24353.2	1	blat.proc3829883.chain_1472	1
scaffold_15	alternate_exon	14663826	14664675	+	asmbl_14644	none	STRG.18874.3	1	STRG.18874.1,Trinity_GG_10354_c0_g1_i4,blat.proc3829879.chain_3459	3
scaffold_7	starts_in_intron	4515210	4515210	+	asmbl_50620	none	blat.proc3829875.chain_1227	1	STRG.8814.1,STRG.8814.2,STRG.8814.3,blat.proc3829875.chain_1228,blat.proc3829875.chain_1229	5
scaffold_23	skipped_exon	7683923	7685948	+	asmbl_31015	none	STRG.26063.6	1	STRG.26063.1,STRG.26063.3,STRG.26063.5,Trinity_GG_14406_c0_g1_i3,Trinity_GG_14406_c0_g1_i4,blat.proc3829883.chain_2977,blat.proc3829883.chain_2978	7
scaffold_20	starts_in_intron	1011728	1011728	-	asmbl_26455	none	blat.proc3829897.chain_3572	1	STRG.22794.1,blat.proc3829897.chain_3571	2
scaffold_19	alt_acceptor	6669597	6669598	+	asmbl_22229	none	STRG.22169.3,blat.proc3829881.chain_3027	2	STRG.22169.4	1
scaffold_20	alt_acceptor	8115271	8115272	-	asmbl_26883	none	STRG.23348.1,blat.proc3829899.chain_421	2	STRG.23348.2,blat.proc3829899.chain_419,blat.proc3829899.chain_422	3
scaffold_1	starts_in_intron	14075462	14075462	+	asmbl_2313	none	STRG.999.2	1	STRG.999.1,Trinity_GG_614_c0_g1_i3,Trinity_GG_614_c0_g1_i4,blat.proc3829871.chain_1100,blat.proc3829871.chain_1101,blat.proc3829871.chain_1102,blat.proc3829871.chain_1103	7
scaffold_2	alt_donor	19359380	19359381	+	asmbl_25312	none	STRG.2800.1,blat.proc3829871.chain_2966	2	STRG.2800.2	1
scaffold_18	retained_intron	7867750	7867862	+	asmbl_20825,asmbl_20827,asmbl_20833	none	STRG.21477.4,Trinity_GG_11877_c0_g1_i6,blat.proc3829881.chain_2467,blat.proc3829881.chain_2473,blat.proc3829881.chain_2476	5	STRG.21477.1,STRG.21477.2,Trinity_GG_11877_c0_g1_i12,Trinity_GG_11877_c0_g1_i14,blat.proc3829881.chain_2469,blat.proc3829881.chain_2471,blat.proc3829881.chain_2474,blat.proc3829881.chain_2475	8
scaffold_1	spliced_intron	5705379	5705535	+	asmbl_1747,asmbl_1750	none	STRG.369.1,blat.proc3829871.chain_431,blat.proc3829871.chain_433	3	blat.proc3829871.chain_429,blat.proc3829871.chain_432	2
scaffold_1	spliced_intron	20506233	20506257	-	asmbl_1185	none	STRG.1403.2	1	STRG.1403.1,Trinity_GG_17787_c1_g1_i4,blat.proc3829887.chain_1298,blat.proc3829887.chain_1299	4
scaffold_17	ends_in_intron	11507879	11507879	+	asmbl_18352	none	blat.proc3829881.chain_1502	1	STRG.20683.1,blat.proc3829881.chain_1500	2
scaffold_3	starts_in_intron	19883060	19883060	-	asmbl_39620	none	blat.proc3829889.chain_138	1	STRG.4100.1,STRG.4100.2,STRG.4100.4,blat.proc3829889.chain_137	4
scaffold_5	ends_in_intron	3981799	3981799	-	asmbl_45327,asmbl_45328	none	blat.proc3829889.chain_1886,blat.proc3829889.chain_1888	2	STRG.5864.1,blat.proc3829889.chain_1887	2
scaffold_24	alternate_exon	10131904	10132338	+	asmbl_32547	none	STRG.26962.3	1	STRG.26962.2,blat.proc3829885.chain_42	2
scaffold_16	retained_intron	411662	411800	-	asmbl_16034	none	blat.proc3829897.chain_77	1	STRG.19020.1,blat.proc3829897.chain_76,blat.proc3829897.chain_78	3
scaffold_14	retained_intron	405268	405642	+	asmbl_11720,asmbl_11721,asmbl_11724,asmbl_11729	none	STRG.16722.4,STRG.16722.6,STRG.16722.7,Trinity_GG_9219_c0_g1_i17,Trinity_GG_9219_c0_g1_i6,blat.proc3829879.chain_1465,blat.proc3829879.chain_1472	7	STRG.16722.1,STRG.16722.2,Trinity_GG_9219_c0_g1_i3,blat.proc3829879.chain_1467,blat.proc3829879.chain_1469,blat.proc3829879.chain_1474	6
scaffold_1	alt_donor	12327527	12327528	+	asmbl_2182	none	STRG.840.3	1	STRG.840.1,blat.proc3829871.chain_839	2
scaffold_6	alt_acceptor	8460405	8460406	+	asmbl_47064	none	STRG.7708.3	1	STRG.7708.2,blat.proc3829875.chain_72	2
scaffold_14	starts_in_intron	5631128	5631128	-	asmbl_13072	none	blat.proc3829895.chain_1714	1	STRG.17029.1,blat.proc3829895.chain_1713	2
scaffold_14	alternate_exon	14374093	14374121	+	asmbl_12528	none	blat.proc3829879.chain_2342	1	Trinity_GG_9712_c0_g1_i1	1
scaffold_13	spliced_intron	16460509	16460808	-	asmbl_10278	none	STRG.16689.5	1	Trinity_GG_26334_c0_g1_i4,blat.proc3829895.chain_1354	2
scaffold_17	retained_intron	4267792	4267908	+	asmbl_17907	none	Trinity_GG_11076_c0_g1_i1,blat.proc3829881.chain_1022	2	STRG.20166.1,blat.proc3829881.chain_1023	2
scaffold_16	skipped_exon	13948602	13949816	-	asmbl_16599	none	STRG.19780.1	1	STRG.19780.2,blat.proc3829897.chain_715,blat.proc3829897.chain_716	3
scaffold_8	spliced_intron	6029233	6029335	+	asmbl_51909,asmbl_51912,asmbl_51914,asmbl_51915	none	Trinity_GG_5590_c1_g1_i6,blat.proc3829875.chain_2551,blat.proc3829875.chain_2553,blat.proc3829875.chain_2554,blat.proc3829875.chain_2555	5	blat.proc3829875.chain_2552	1
scaffold_19	retained_intron	1106060	1106189	-	asmbl_21230,asmbl_21235	none	STRG.21887.3,Trinity_GG_29212_c0_g1_i4,blat.proc3829897.chain_2644	3	STRG.21887.1,STRG.21887.2,STRG.21887.4,Trinity_GG_29212_c0_g1_i3,blat.proc3829897.chain_2643	5
scaffold_16	alt_donor	9632275	9632276	-	asmbl_16472	none	Trinity_GG_27988_c0_g1_i2,blat.proc3829897.chain_563	2	STRG.19549.1,Trinity_GG_27988_c0_g1_i1,blat.proc3829897.chain_562	3
scaffold_2	spliced_intron	10635940	10636060	-	asmbl_23440,asmbl_23441,asmbl_23442,asmbl_23443	none	STRG.2225.1,STRG.2225.2,blat.proc3829887.chain_2055,blat.proc3829887.chain_2056,blat.proc3829887.chain_2057	5	blat.proc3829887.chain_2058	1
scaffold_7	ends_in_intron	7612000	7612000	-	asmbl_49768	none	Trinity_GG_22109_c0_g1_i3,blat.proc3829891.chain_1279	2	STRG.9004.1,STRG.9004.2,STRG.9004.3,STRG.9004.4,blat.proc3829891.chain_1278,blat.proc3829891.chain_1280	6
scaffold_3	alt_acceptor	6656792	6656793	+	asmbl_40065,asmbl_40066,asmbl_40069	none	STRG.3290.5,blat.proc3829871.chain_3458,blat.proc3829871.chain_3461,blat.proc3829871.chain_3466,blat.proc3829871.chain_3467	5	STRG.3290.1,STRG.3290.2,STRG.3290.3,STRG.3290.4,Trinity_GG_1861_c0_g1_i14,blat.proc3829871.chain_3465,blat.proc3829871.chain_3470	7
scaffold_14	skipped_exon	11139409	11139772	-	asmbl_13429	none	STRG.17433.2,blat.proc3829895.chain_2146	2	STRG.17433.1,blat.proc3829895.chain_2149	2
scaffold_1	alt_acceptor	6920062	6920063	-	asmbl_414	none	blat.proc3829887.chain_393	1	STRG.485.1,blat.proc3829887.chain_395	2
scaffold_16	alt_acceptor	14677235	14677236	+	asmbl_17504,asmbl_17505	none	STRG.19857.2,blat.proc3829881.chain_707,blat.proc3829881.chain_708	3	STRG.19857.1	1
scaffold_22	ends_in_intron	11715174	11715174	+	asmbl_29707	none	blat.proc3829883.chain_2418	1	blat.proc3829883.chain_2419	1
scaffold_9	retained_intron	12580227	12580248	+	asmbl_54426	none	Trinity_GG_6463_c0_g1_i1,blat.proc3829877.chain_346	2	STRG.11564.2	1
scaffold_12	starts_in_intron	16438557	16438557	+	asmbl_9149,asmbl_9150	none	Trinity_GG_8463_c0_g1_i2,blat.proc3829879.chain_57,blat.proc3829879.chain_58	3	STRG.15389.2	1
scaffold_11	spliced_intron	17095575	17095790	+	asmbl_6175	none	STRG.14365.3,blat.proc3829877.chain_2870	2	STRG.14365.1,STRG.14365.2,blat.proc3829877.chain_2871	3
scaffold_11	spliced_intron	4744838	4745192	-	asmbl_6598,asmbl_6601,asmbl_6602,asmbl_6603	none	STRG.13555.2,blat.proc3829893.chain_2035,blat.proc3829893.chain_2038,blat.proc3829893.chain_2039,blat.proc3829893.chain_2040	5	blat.proc3829893.chain_2037	1
scaffold_11	starts_in_intron	9532025	9532025	-	asmbl_6923	none	blat.proc3829893.chain_2356	1	STRG.13969.1,blat.proc3829893.chain_2355	2
scaffold_11	alt_donor	13554164	13554165	-	asmbl_7115	none	STRG.14200.1,blat.proc3829893.chain_2651	2	blat.proc3829893.chain_2650	1
scaffold_3	alt_donor	13424029	13424030	-	asmbl_39212,asmbl_39217	none	STRG.3690.3,STRG.3690.5	2	STRG.3690.2,STRG.3690.4	2
scaffold_19	skipped_exon	5461618	5462863	+	asmbl_22175,asmbl_22178	none	STRG.22103.1,blat.proc3829881.chain_3056,blat.proc3829881.chain_3058	3	blat.proc3829881.chain_3055	1
scaffold_4	ends_in_intron	3421899	3421899	-	asmbl_41183	none	blat.proc3829889.chain_395	1	STRG.4271.1,STRG.4271.2	2
scaffold_11	spliced_intron	9174309	9174475	+	asmbl_5838	none	STRG.13939.2,Trinity_GG_7696_c0_g1_i2,blat.proc3829877.chain_2451	3	STRG.13939.1,Trinity_GG_7696_c0_g1_i1,blat.proc3829877.chain_2452	3
scaffold_10	ends_in_intron	11967805	11967805	+	asmbl_4785	none	blat.proc3829877.chain_1314	1	STRG.12831.1,STRG.12831.2,STRG.12831.3,Trinity_GG_7032_c0_g1_i14,Trinity_GG_7032_c0_g1_i16,blat.proc3829877.chain_1316,blat.proc3829877.chain_1317,blat.proc3829877.chain_1319,blat.proc3829877.chain_1320,blat.proc3829877.chain_1321,blat.proc3829877.chain_1322	11
scaffold_2258	skipped_exon	403	1245	-	asmbl_30576	none	STRG.30708.2	1	STRG.30708.1	1
scaffold_12	retained_intron	12003833	12004558	-	asmbl_7977,asmbl_7978	none	STRG.15099.2,STRG.15099.3,blat.proc3829893.chain_3432,blat.proc3829893.chain_3433	4	STRG.15099.1,Trinity_GG_25403_c0_g1_i3,blat.proc3829893.chain_3434	3
scaffold_18	spliced_intron	1860254	1860365	+	asmbl_20409,asmbl_20410	none	STRG.21062.1,STRG.21062.2,blat.proc3829881.chain_1895	3	blat.proc3829881.chain_1896	1
scaffold_23	starts_in_intron	3002671	3002671	-	asmbl_31499	none	STRG.25726.1,blat.proc3829899.chain_2850	2	STRG.25726.2,blat.proc3829899.chain_2851	2
scaffold_5	alt_acceptor	7315370	7315371	+	asmbl_44146	none	STRG.6118.1,blat.proc3829873.chain_2271	2	STRG.6118.2,blat.proc3829873.chain_2270	2
scaffold_17	alt_donor	8318412	8318413	+	asmbl_18094	none	STRG.20443.2	1	STRG.20443.1,STRG.20443.3,Trinity_GG_11211_c0_g1_i1,blat.proc3829881.chain_1250,blat.proc3829881.chain_1251,blat.proc3829881.chain_1252,blat.proc3829881.chain_1253	7
scaffold_4	skipped_exon	13875672	13876976	-	asmbl_41764	none	STRG.5020.1,blat.proc3829889.chain_1021	2	blat.proc3829889.chain_1023,blat.proc3829889.chain_1025	2
scaffold_15	retained_exon	5742772	5742851	-	asmbl_15241,asmbl_15243,asmbl_15244	none	STRG.18248.1,STRG.18248.3,STRG.18248.4	3	STRG.18248.2	1
scaffold_8	retained_intron	4859675	4859836	-	asmbl_52804	none	blat.proc3829891.chain_2118	1	STRG.9940.1,blat.proc3829891.chain_2117	2
scaffold_28	ends_in_intron	7241738	7241738	+	asmbl_38346	none	blat.proc3829885.chain_2868	1	STRG.29768.1,blat.proc3829885.chain_2869	2
scaffold_9	retained_exon	9707266	9707334	+	asmbl_54216	none	STRG.11336.1,blat.proc3829877.chain_110	2	Trinity_GG_6324_c1_g1_i1,blat.proc3829877.chain_111	2
scaffold_4	spliced_intron	4415761	4416396	+	asmbl_42571,asmbl_42576,asmbl_42577,asmbl_42578,asmbl_42580,asmbl_42589,asmbl_42591,asmbl_42593	none	STRG.4344.1,STRG.4344.2,STRG.4344.3,STRG.4344.4,Trinity_GG_2404_c0_g1_i14,Trinity_GG_2404_c0_g1_i5,Trinity_GG_2404_c0_g1_i8,blat.proc3829873.chain_682,blat.proc3829873.chain_683,blat.proc3829873.chain_691,blat.proc3829873.chain_692,blat.proc3829873.chain_695,blat.proc3829873.chain_696,blat.proc3829873.chain_697	14	Trinity_GG_2404_c0_g1_i10,Trinity_GG_2404_c0_g1_i19,blat.proc3829873.chain_680,blat.proc3829873.chain_681,blat.proc3829873.chain_685,blat.proc3829873.chain_686,blat.proc3829873.chain_687,blat.proc3829873.chain_688,blat.proc3829873.chain_689,blat.proc3829873.chain_690,blat.proc3829873.chain_698	11
scaffold_7	ends_in_intron	705444	705444	-	asmbl_49500	none	STRG.8597.2,Trinity_GG_21931_c0_g1_i2,blat.proc3829891.chain_952	3	blat.proc3829891.chain_954,blat.proc3829891.chain_955	2
scaffold_1611	starts_in_intron	1290	1290	+	asmbl_17635	none	Trinity_GG_16915_c0_g1_i2,blat.proc3829885.chain_3541	2	STRG.30612.1	1
scaffold_52	alt_acceptor	15173	15174	+	asmbl_46479,asmbl_46481	none	STRG.30039.2,STRG.30039.3,blat.proc3829885.chain_3103	3	STRG.30039.1,blat.proc3829885.chain_3104,blat.proc3829885.chain_3105	3
scaffold_6	starts_in_intron	14077798	14077798	+	asmbl_47507	none	STRG.8159.2	1	STRG.8159.1,blat.proc3829875.chain_580,blat.proc3829875.chain_581	3
scaffold_19	retained_intron	11483212	11483614	-	asmbl_21615	none	STRG.22477.1,blat.proc3829897.chain_3181	2	STRG.22477.3,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184	3
scaffold_20	starts_in_intron	6657595	6657595	-	asmbl_26763	none	blat.proc3829899.chain_281	1	STRG.23227.1,STRG.23227.2,blat.proc3829899.chain_282,blat.proc3829899.chain_283,blat.proc3829899.chain_284	5
scaffold_12	skipped_exon	7422321	7422854	-	asmbl_7713	none	STRG.14807.2,blat.proc3829893.chain_3199	2	STRG.14807.1,blat.proc3829893.chain_3200	2
scaffold_40	spliced_intron	26688	26808	+	asmbl_43643	none	STRG.30017.2	1	STRG.30017.1,Trinity_GG_16624_c0_g1_i1,blat.proc3829885.chain_3093	3
scaffold_15	alt_acceptor	15410184	15410185	+	asmbl_14721,asmbl_14722,asmbl_14724	none	STRG.18921.1,STRG.18921.6,STRG.18921.8	3	STRG.18921.10,STRG.18921.2,STRG.18921.3,STRG.18921.4,STRG.18921.5,STRG.18921.7,STRG.18921.9,blat.proc3829879.chain_3514,blat.proc3829879.chain_3515,blat.proc3829879.chain_3517,blat.proc3829879.chain_3518	11
scaffold_17	ends_in_intron	1668807	1668807	+	asmbl_17751	none	blat.proc3829881.chain_826	1	STRG.19985.1,STRG.19985.2,blat.proc3829881.chain_825,blat.proc3829881.chain_827	4
scaffold_1	skipped_exon	977974	978459	-	asmbl_42	none	STRG.58.1,Trinity_GG_17051_c0_g1_i1,blat.proc3829885.chain_3724	3	STRG.58.2	1
scaffold_7	alt_acceptor	18580185	18580186	+	asmbl_51416	none	STRG.9663.2	1	STRG.9663.1,blat.proc3829875.chain_2123	2
scaffold_10	alt_donor	10831410	10831411	-	asmbl_3666	none	STRG.12762.1,blat.proc3829893.chain_1270	2	STRG.12762.2	1
scaffold_5	retained_intron	15041706	15041804	-	asmbl_46023	none	Trinity_GG_20768_c0_g3_i2,blat.proc3829889.chain_2746	2	STRG.6692.1,STRG.6692.2,STRG.6692.3,blat.proc3829889.chain_2739,blat.proc3829889.chain_2741,blat.proc3829889.chain_2745	6
scaffold_26	alt_acceptor	1326467	1326468	-	asmbl_34676,asmbl_34677	none	STRG.27898.2,STRG.27898.4	2	STRG.27898.1,STRG.27898.3,STRG.27898.5	3
scaffold_2	alt_acceptor	4009094	4009095	+	asmbl_24349	none	STRG.1841.3	1	STRG.1841.1,blat.proc3829871.chain_1892	2
scaffold_7	starts_in_intron	11767603	11767603	+	asmbl_51065,asmbl_51066	none	STRG.9278.2,blat.proc3829875.chain_1737	2	STRG.9278.1,blat.proc3829875.chain_1735	2
scaffold_19	starts_in_intron	13629202	13629202	-	asmbl_21886	none	blat.proc3829897.chain_3445	1	STRG.22670.1	1
scaffold_14	alt_acceptor	14536262	14536263	-	asmbl_13673	none	STRG.17699.3	1	STRG.17699.1,STRG.17699.4	2
scaffold_17	alternate_exon	9444317	9452032	+	asmbl_18209,asmbl_18210,asmbl_18211	none	STRG.20557.1,Trinity_GG_11275_c0_g1_i11,Trinity_GG_11275_c0_g1_i4,Trinity_GG_11275_c0_g1_i8,blat.proc3829881.chain_1391,blat.proc3829881.chain_1392,blat.proc3829881.chain_1394	7	STRG.20557.3,STRG.20557.4,Trinity_GG_11275_c0_g1_i7,blat.proc3829881.chain_1395	4
scaffold_26	alt_donor	665311	665312	-	asmbl_34664	none	STRG.27844.1	1	STRG.27844.2	1
scaffold_25	starts_in_intron	6001333	6001333	-	asmbl_34272	none	blat.proc3829901.chain_712	1	STRG.27469.1,STRG.27469.2,blat.proc3829901.chain_713	3
scaffold_16	alt_acceptor	314216	314217	-	asmbl_16021,asmbl_16022	none	STRG.19011.2,STRG.19011.4	2	STRG.19011.1,STRG.19011.3	2
scaffold_13	retained_intron	11601420	11601630	+	asmbl_11272	none	Trinity_GG_8948_c0_g1_i9,blat.proc3829879.chain_1021	2	STRG.16295.1,STRG.16295.2,STRG.16295.5,blat.proc3829879.chain_1014,blat.proc3829879.chain_1015,blat.proc3829879.chain_1016,blat.proc3829879.chain_1018,blat.proc3829879.chain_1019,blat.proc3829879.chain_1020,blat.proc3829879.chain_1023	10
scaffold_22	retained_intron	10004898	10005099	+	asmbl_29626	none	STRG.25327.2	1	STRG.25327.1,blat.proc3829883.chain_2325	2
scaffold_6	alt_donor	3254050	3254051	+	asmbl_46769	none	STRG.7320.1,Trinity_GG_3979_c0_g1_i1	2	STRG.7320.2,Trinity_GG_3979_c0_g1_i2	2
scaffold_4	spliced_intron	4417425	4417532	+	asmbl_42571,asmbl_42576,asmbl_42577,asmbl_42580,asmbl_42583,asmbl_42584,asmbl_42587,asmbl_42589,asmbl_42591,asmbl_42593	none	STRG.4344.1,STRG.4344.2,STRG.4344.3,STRG.4344.4,Trinity_GG_2404_c0_g1_i5,blat.proc3829873.chain_681,blat.proc3829873.chain_682,blat.proc3829873.chain_686,blat.proc3829873.chain_691,blat.proc3829873.chain_696,blat.proc3829873.chain_697,blat.proc3829873.chain_698	12	Trinity_GG_2404_c0_g1_i10,Trinity_GG_2404_c0_g1_i19,blat.proc3829873.chain_685,blat.proc3829873.chain_687,blat.proc3829873.chain_689,blat.proc3829873.chain_690	6
scaffold_5	retained_intron	10974515	10975047	+	asmbl_44389	none	Trinity_GG_3441_c0_g1_i3	1	STRG.6369.1,blat.proc3829873.chain_2459	2
scaffold_14	alt_acceptor	6062173	6062174	+	asmbl_12026	none	Trinity_GG_9379_c0_g1_i1,blat.proc3829879.chain_1769	2	STRG.17052.1,STRG.17052.2	2
scaffold_5	alt_acceptor	7890826	7890827	+	asmbl_44182	none	STRG.6159.2	1	STRG.6159.1,blat.proc3829873.chain_2313	2
scaffold_2	retained_intron	16414057	16414370	-	asmbl_23705,asmbl_23708	none	STRG.2585.3,blat.proc3829887.chain_2413	2	STRG.2585.1,blat.proc3829887.chain_2410,blat.proc3829887.chain_2411,blat.proc3829887.chain_2412	4
scaffold_23	spliced_intron	8104276	8104414	+	asmbl_31055,asmbl_31056	none	STRG.26106.1,STRG.26106.2	2	STRG.26106.3	1
scaffold_6	alternate_exon	7988100	7988149	-	asmbl_48457	none	STRG.7669.1	1	STRG.7669.2,blat.proc3829889.chain_3694	2
scaffold_14	spliced_intron	14251277	14251622	-	asmbl_13667	none	STRG.17671.1,blat.proc3829895.chain_2382	2	STRG.17671.2,Trinity_GG_26920_c0_g1_i3,blat.proc3829895.chain_2381,blat.proc3829895.chain_2383	4
scaffold_1	retained_intron	13537305	13537508	-	asmbl_829,asmbl_830	none	blat.proc3829887.chain_772,blat.proc3829887.chain_775	2	STRG.966.1,Trinity_GG_17468_c0_g1_i1,Trinity_GG_17468_c0_g1_i5,blat.proc3829887.chain_771,blat.proc3829887.chain_773,blat.proc3829887.chain_774	6
scaffold_20	spliced_intron	7857888	7858063	-	asmbl_26853,asmbl_26854,asmbl_26855	none	STRG.23322.1,STRG.23322.2,STRG.23322.3,blat.proc3829899.chain_376,blat.proc3829899.chain_378	5	STRG.23322.4,blat.proc3829899.chain_377	2
scaffold_17	retained_exon	9530712	9531028	+	asmbl_18230	none	STRG.20566.1,Trinity_GG_11250_c0_g1_i1,blat.proc3829881.chain_1355	3	STRG.20566.2,Trinity_GG_11250_c0_g1_i3,Trinity_GG_11250_c0_g1_i4,Trinity_GG_11250_c0_g1_i7,blat.proc3829881.chain_1349,blat.proc3829881.chain_1350,blat.proc3829881.chain_1351,blat.proc3829881.chain_1352,blat.proc3829881.chain_1353	9
scaffold_18	retained_intron	5990415	5990661	+	asmbl_20681	none	blat.proc3829881.chain_2210	1	blat.proc3829881.chain_2205,blat.proc3829881.chain_2206,blat.proc3829881.chain_2207,blat.proc3829881.chain_2208,blat.proc3829881.chain_2209,blat.proc3829881.chain_2211,blat.proc3829881.chain_2212	7
scaffold_14	retained_intron	8002248	8002475	+	asmbl_12162,asmbl_12163	none	STRG.17199.2,Trinity_GG_9467_c0_g1_i1,Trinity_GG_9467_c0_g1_i2,blat.proc3829879.chain_1931,blat.proc3829879.chain_1934	5	STRG.17199.1,Trinity_GG_9467_c0_g1_i4,blat.proc3829879.chain_1932	3
scaffold_12	spliced_intron	9861352	9861459	+	asmbl_8851	none	STRG.14943.1,blat.proc3829877.chain_3375	2	blat.proc3829877.chain_3376	1
scaffold_13	retained_intron	8683729	8683824	+	asmbl_11123	none	STRG.16120.1,Trinity_GG_8870_c0_g1_i2,Trinity_GG_8870_c0_g1_i3,blat.proc3829879.chain_879,blat.proc3829879.chain_881	5	Trinity_GG_8870_c0_g1_i1,blat.proc3829879.chain_880	2
scaffold_14	retained_intron	399142	399368	+	asmbl_11722	none	STRG.16722.3	1	STRG.16722.4,STRG.16722.6,blat.proc3829879.chain_1463	3
scaffold_6	starts_in_intron	3290819	3290819	+	asmbl_46773	none	blat.proc3829873.chain_3454	1	STRG.7328.1,blat.proc3829873.chain_3455,blat.proc3829873.chain_3456	3
scaffold_19	retained_intron	7586916	7587075	-	asmbl_21453,asmbl_21454	none	STRG.22232.1,STRG.22232.2	2	blat.proc3829897.chain_2932	1
scaffold_13	retained_intron	4601282	4601369	-	asmbl_9603	none	Trinity_GG_25880_c0_g1_i4,blat.proc3829895.chain_527	2	STRG.15781.1,STRG.15781.2,blat.proc3829895.chain_529,blat.proc3829895.chain_531,blat.proc3829895.chain_533	5
scaffold_6	ends_in_intron	12994820	12994820	-	asmbl_48804	none	STRG.8061.5,blat.proc3829891.chain_273	2	STRG.8061.1,STRG.8061.2,STRG.8061.3,STRG.8061.4,Trinity_GG_21547_c0_g1_i10,blat.proc3829891.chain_259,blat.proc3829891.chain_260,blat.proc3829891.chain_262,blat.proc3829891.chain_263,blat.proc3829891.chain_264,blat.proc3829891.chain_271,blat.proc3829891.chain_272,blat.proc3829891.chain_275	13
scaffold_11	starts_in_intron	849634	849634	+	asmbl_5264	none	blat.proc3829877.chain_1792	1	STRG.13270.1,Trinity_GG_7303_c0_g1_i5,blat.proc3829877.chain_1794	3
scaffold_21	alternate_exon	3155852	3156165	+	asmbl_28494	none	STRG.23945.4	1	STRG.23945.5,blat.proc3829883.chain_1064	2
scaffold_6	starts_in_intron	8462787	8462787	+	asmbl_47066	none	blat.proc3829875.chain_71	1	STRG.7708.1,STRG.7708.2,STRG.7708.3,STRG.7708.4,blat.proc3829875.chain_72,blat.proc3829875.chain_73,blat.proc3829875.chain_74	7
scaffold_13	spliced_intron	5506761	5506941	+	asmbl_10838	none	STRG.15830.2,Trinity_GG_8666_c0_g1_i2,blat.proc3829879.chain_460	3	STRG.15830.1,STRG.15830.3,Trinity_GG_8666_c0_g1_i1,Trinity_GG_8666_c0_g1_i4,blat.proc3829879.chain_461,blat.proc3829879.chain_463	6
scaffold_8	ends_in_intron	15765479	15765479	+	asmbl_52415	none	Trinity_GG_5878_c3_g1_i1,blat.proc3829875.chain_3070	2	STRG.10573.1	1
scaffold_11	retained_intron	16652240	16652614	+	asmbl_6151	none	blat.proc3829877.chain_2838,blat.proc3829877.chain_2839	2	STRG.14353.1,blat.proc3829877.chain_2841,blat.proc3829877.chain_2842	3
scaffold_4	alt_acceptor	16133429	16133430	-	asmbl_41893	none	STRG.5182.3	1	STRG.5182.2,blat.proc3829889.chain_1220	2
scaffold_18	alt_acceptor	12935840	12935841	+	asmbl_21004	none	blat.proc3829897.chain_2535	1	STRG.21731.1,STRG.21731.3	2
scaffold_14	skipped_exon	12807539	12807951	-	asmbl_13592	none	STRG.17571.1,blat.proc3829895.chain_2306	2	STRG.17571.2	1
scaffold_4	alternate_exon	18274914	18275098	-	asmbl_42105	none	STRG.5423.1	1	STRG.5423.2,STRG.5423.3	2
scaffold_17	starts_in_intron	6593559	6593559	+	asmbl_17987	none	blat.proc3829881.chain_1098	1	STRG.20304.1	1
scaffold_2	starts_in_intron	14194051	14194051	-	asmbl_23580	none	STRG.2417.1	1	STRG.2417.2,blat.proc3829887.chain_2207,blat.proc3829887.chain_2208,blat.proc3829887.chain_2209,blat.proc3829887.chain_2210,blat.proc3829887.chain_2212	6
scaffold_21	starts_in_intron	3769007	3769007	-	asmbl_27562	none	blat.proc3829899.chain_1029	1	STRG.23958.2,STRG.23958.3	2
scaffold_11	starts_in_intron	563112	563112	-	asmbl_6370	none	blat.proc3829893.chain_1714	1	STRG.13260.1,blat.proc3829893.chain_1715	2
scaffold_14	alt_acceptor	9273611	9273612	-	asmbl_13343,asmbl_13345,asmbl_13348	none	STRG.17323.1,blat.proc3829895.chain_1995,blat.proc3829895.chain_1996,blat.proc3829895.chain_1997	4	STRG.17323.2	1
scaffold_3	alt_acceptor	5870705	5870706	+	asmbl_40046	none	STRG.3243.1,blat.proc3829871.chain_3319	2	STRG.3243.2	1
scaffold_27	ends_in_intron	637998	637998	-	asmbl_36662	none	Trinity_GG_32989_c1_g1_i6,blat.proc3829901.chain_1761	2	STRG.28565.1,Trinity_GG_32989_c1_g1_i3,Trinity_GG_32989_c1_g1_i5,blat.proc3829901.chain_1760,blat.proc3829901.chain_1762	5
scaffold_25	alt_acceptor	286077	286078	-	asmbl_33957	none	STRG.27046.1,blat.proc3829901.chain_376	2	STRG.27046.2	1
scaffold_12	alt_donor	7621033	7621034	+	asmbl_8736	none	STRG.14827.2	1	STRG.14827.1,STRG.14827.3,blat.proc3829877.chain_3328	3
scaffold_18	alt_donor	3798322	3798323	-	asmbl_19809,asmbl_19810	none	STRG.21185.3,Trinity_GG_28883_c0_g1_i5,blat.proc3829897.chain_2080,blat.proc3829897.chain_2082,blat.proc3829897.chain_2083	5	STRG.21185.1,blat.proc3829897.chain_2077,blat.proc3829897.chain_2078	3
scaffold_2	retained_intron	883173	884738	+	asmbl_24145	none	STRG.1563.2	1	blat.proc3829871.chain_1566,blat.proc3829871.chain_1567	2
scaffold_22	spliced_intron	210328	210515	+	asmbl_29117	none	STRG.24661.3,blat.proc3829883.chain_1720	2	STRG.24661.1,STRG.24661.2,STRG.24661.4,STRG.24661.5,STRG.24661.6,Trinity_GG_13639_c1_g1_i1,blat.proc3829883.chain_1719	7
scaffold_17	starts_in_intron	14125869	14125869	-	asmbl_19458	none	blat.proc3829897.chain_1706	1	STRG.20878.1	1
scaffold_2	spliced_intron	15686309	15686390	+	asmbl_25090,asmbl_25092	none	STRG.2521.1,STRG.2521.3,Trinity_GG_1432_c0_g1_i1,Trinity_GG_1432_c0_g1_i4,blat.proc3829871.chain_2712	5	blat.proc3829871.chain_2713	1
scaffold_18	retained_exon	1896929	1896937	-	asmbl_19690,asmbl_19704,asmbl_19705,asmbl_19706	none	blat.proc3829897.chain_1898,blat.proc3829897.chain_1899,blat.proc3829897.chain_1901,blat.proc3829897.chain_1902	4	STRG.21072.4,STRG.21072.6	2
scaffold_1	alternate_exon	12108822	12109217	+	asmbl_2158	none	Trinity_GG_480_c0_g1_i1,blat.proc3829871.chain_850,blat.proc3829871.chain_851	3	STRG.824.1,blat.proc3829871.chain_849	2
scaffold_22	spliced_intron	744120	744573	-	asmbl_29892	none	blat.proc3829899.chain_1766	1	blat.proc3829899.chain_1764	1
scaffold_15	starts_in_intron	14650436	14650436	+	asmbl_14639	none	Trinity_GG_10352_c0_g1_i2	1	STRG.18869.1,Trinity_GG_10352_c0_g1_i3	2
scaffold_9	spliced_intron	15384227	15384543	+	asmbl_54537,asmbl_54541	none	STRG.11728.1,blat.proc3829877.chain_490,blat.proc3829877.chain_493	3	blat.proc3829877.chain_492	1
scaffold_23	alt_acceptor	4091584	4091585	+	asmbl_30781,asmbl_30784	none	STRG.25798.1,Trinity_GG_14243_c0_g1_i1,blat.proc3829883.chain_2693	3	STRG.25798.2,blat.proc3829883.chain_2692	2
scaffold_4	starts_in_intron	294931	294931	-	asmbl_41063	none	blat.proc3829889.chain_247	1	Trinity_GG_19317_c0_g1_i1,Trinity_GG_19317_c0_g1_i4,blat.proc3829889.chain_248,blat.proc3829889.chain_250	4
scaffold_16	alternate_exon	7533047	7533708	+	asmbl_17146	none	STRG.19399.2	1	STRG.19399.3,blat.proc3829881.chain_273	2
scaffold_27	alt_donor	7230282	7230283	+	asmbl_36390	none	blat.proc3829885.chain_2186	1	STRG.29062.2,blat.proc3829885.chain_2185	2
scaffold_25	alt_donor	7324105	7324106	-	asmbl_34370	none	STRG.27566.2	1	STRG.27566.1,STRG.27566.4,blat.proc3829885.chain_601	3
scaffold_17	retained_exon	2357645	2357750	+	asmbl_17765,asmbl_17771	none	STRG.20017.1,blat.proc3829881.chain_852,blat.proc3829881.chain_853	3	STRG.20017.2	1
scaffold_1490	alt_donor	621	622	-	asmbl_13885	none	STRG.30588.1	1	STRG.30588.2	1
scaffold_9	alternate_exon	9705074	9705924	+	asmbl_54219	none	STRG.11336.5,blat.proc3829877.chain_112	2	STRG.11336.4	1
scaffold_15	spliced_intron	2564142	2564591	+	asmbl_14004	none	STRG.18036.1,Trinity_GG_9908_c0_g1_i6	2	STRG.18036.4	1
scaffold_14	alt_acceptor	11572188	11572189	-	asmbl_13481,asmbl_13485	none	STRG.17490.5,blat.proc3829895.chain_2173,blat.proc3829895.chain_2180	3	STRG.17490.3	1
scaffold_17	alt_acceptor	1727875	1727876	+	asmbl_17755	none	STRG.19996.2	1	STRG.19996.1,blat.proc3829881.chain_836	2
scaffold_3	alt_acceptor	13175020	13175021	+	asmbl_40387,asmbl_40390,asmbl_40391,asmbl_40392,asmbl_40394	none	STRG.3679.1,STRG.3679.3,blat.proc3829873.chain_76,blat.proc3829873.chain_77,blat.proc3829873.chain_78,blat.proc3829873.chain_79	6	STRG.3679.2	1
scaffold_8	alt_donor	4634245	4634246	-	asmbl_52775	none	STRG.9916.2	1	STRG.9916.1	1
scaffold_3	alt_acceptor	4543329	4543330	+	asmbl_39975	none	STRG.3151.2	1	STRG.3151.1	1
scaffold_3	skipped_exon	18376861	18377450	-	asmbl_39569	none	STRG.4042.2	1	STRG.4042.1,blat.proc3829889.chain_111	2
scaffold_3	spliced_intron	17364750	17365193	-	asmbl_39495,asmbl_39500,asmbl_39504,asmbl_39505	none	STRG.3972.1,blat.proc3829889.chain_23,blat.proc3829889.chain_29,blat.proc3829889.chain_30	4	blat.proc3829889.chain_22,blat.proc3829889.chain_27	2
scaffold_13	alt_donor	2338672	2338673	+	asmbl_10577,asmbl_10578	none	blat.proc3829879.chain_156,blat.proc3829879.chain_163	2	STRG.15543.11,blat.proc3829879.chain_154,blat.proc3829879.chain_157	3
scaffold_6	alt_donor	5628778	5628779	+	asmbl_46902	none	STRG.7514.2,Trinity_GG_4106_c0_g1_i1,blat.proc3829873.chain_3617	3	STRG.7514.1,Trinity_GG_4106_c0_g1_i2,blat.proc3829873.chain_3618	3
scaffold_1	retained_intron	10763493	10763516	-	asmbl_608	none	STRG.696.1,Trinity_GG_17404_c1_g1_i1,blat.proc3829887.chain_630	3	STRG.696.2	1
scaffold_4	starts_in_intron	17026991	17026991	+	asmbl_43360,asmbl_43362	none	STRG.5305.3,blat.proc3829873.chain_1531,blat.proc3829873.chain_1532	3	STRG.5305.2,Trinity_GG_2913_c1_g1_i1,blat.proc3829873.chain_1535	3
scaffold_2	retained_intron	15274444	15274538	+	asmbl_25043	none	blat.proc3829871.chain_2536	1	STRG.2481.1,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2533,blat.proc3829871.chain_2534,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	9
scaffold_13	alt_acceptor	15672545	15672546	+	asmbl_11505,asmbl_11507	none	STRG.16598.1,STRG.16598.2	2	STRG.16598.3	1
scaffold_23	alt_donor	2992463	2992464	-	asmbl_31493	none	STRG.25729.3	1	STRG.25729.1,blat.proc3829899.chain_2864,blat.proc3829899.chain_2872	3
scaffold_2	ends_in_intron	15286709	15286709	+	asmbl_25046	none	STRG.2476.2,blat.proc3829871.chain_2511	2	STRG.2476.1,STRG.2476.3	2
scaffold_12	alternate_exon	9232261	9233213	-	asmbl_7787,asmbl_7791,asmbl_7792	none	STRG.14912.8,blat.proc3829893.chain_3298,blat.proc3829893.chain_3301,blat.proc3829893.chain_3305	4	STRG.14912.2,STRG.14912.3,STRG.14912.4,STRG.14912.5,STRG.14912.6,STRG.14912.7,blat.proc3829893.chain_3304,blat.proc3829893.chain_3307	8
scaffold_20	ends_in_intron	9963580	9963580	-	asmbl_26993	none	blat.proc3829899.chain_551	1	STRG.23526.1	1
scaffold_3	retained_intron	14186116	14186271	-	asmbl_39281,asmbl_39282	none	STRG.3759.1,STRG.3759.2,blat.proc3829887.chain_3546	3	STRG.3759.3,STRG.3759.4,STRG.3759.5,Trinity_GG_19089_c0_g1_i5,blat.proc3829887.chain_3542	5
scaffold_17	skipped_exon	2355464	2357644	+	asmbl_17765	none	STRG.20017.1,blat.proc3829881.chain_852	2	STRG.20017.2,STRG.20017.4,STRG.20017.5,STRG.20017.6,STRG.20017.7	5
scaffold_1	spliced_intron	169539	169855	+	asmbl_1396	none	STRG.14.1,Trinity_GG_21_c0_g1_i1,blat.proc3829871.chain_33	3	Trinity_GG_21_c0_g2_i1,Trinity_GG_21_c0_g2_i2,blat.proc3829871.chain_35,blat.proc3829871.chain_36	4
scaffold_27	alt_acceptor	638380	638381	-	asmbl_36661	none	Trinity_GG_32989_c1_g1_i5,blat.proc3829901.chain_1762	2	STRG.28565.1,Trinity_GG_32989_c1_g1_i6,blat.proc3829901.chain_1761	3
scaffold_5	alt_donor	14042092	14042093	-	asmbl_45967	none	STRG.6610.1,blat.proc3829889.chain_2662	2	STRG.6610.2,blat.proc3829889.chain_2663	2
scaffold_6	alt_acceptor	8643315	8643316	+	asmbl_47104,asmbl_47107	none	STRG.7737.3,blat.proc3829875.chain_103	2	STRG.7737.1,STRG.7737.2,blat.proc3829875.chain_105	3
scaffold_8	alt_donor	11675595	11675596	-	asmbl_53151	none	STRG.10357.1	1	STRG.10357.2	1
scaffold_19	starts_in_intron	7687580	7687580	-	asmbl_21464	none	blat.proc3829897.chain_2970	1	STRG.22233.1,blat.proc3829897.chain_2971	2
scaffold_15	retained_intron	14663241	14663825	+	asmbl_14640	none	Trinity_GG_10354_c0_g1_i2,Trinity_GG_10354_c1_g1_i1,blat.proc3829879.chain_3458,blat.proc3829879.chain_3461	4	STRG.18874.3	1
scaffold_21	alternate_exon	5774120	5774359	-	asmbl_27724	none	blat.proc3829899.chain_1197	1	STRG.24099.1,blat.proc3829899.chain_1196,blat.proc3829899.chain_1198,blat.proc3829899.chain_1200	4
scaffold_16	alt_acceptor	11337139	11337140	+	asmbl_17381	none	STRG.19652.4,blat.proc3829881.chain_554,blat.proc3829881.chain_555	3	STRG.19652.1,STRG.19652.2,STRG.19652.5,blat.proc3829881.chain_553	4
scaffold_7	starts_in_intron	4537472	4537472	+	asmbl_50623	none	blat.proc3829875.chain_1212	1	STRG.8818.1	1
scaffold_18	retained_intron	4077684	4077771	+	asmbl_20522	none	Trinity_GG_11659_c1_g1_i1,blat.proc3829881.chain_2062	2	STRG.21199.1,blat.proc3829881.chain_2063	2
scaffold_27	alt_acceptor	5927023	5927024	-	asmbl_36997	none	STRG.28980.2,blat.proc3829901.chain_2163	2	STRG.28980.1,blat.proc3829901.chain_2165	2
scaffold_1	spliced_intron	14411093	14411191	-	asmbl_918	none	STRG.1036.1,blat.proc3829887.chain_940	2	blat.proc3829887.chain_941	1
scaffold_2	alt_acceptor	888814	888815	+	asmbl_24148,asmbl_24153	none	STRG.1564.5,blat.proc3829871.chain_1550	2	blat.proc3829871.chain_1546	1
scaffold_17	alt_donor	8000363	8000364	+	asmbl_18059	none	STRG.20405.2,Trinity_GG_11131_c0_g1_i2,blat.proc3829881.chain_1114	3	STRG.20405.1,Trinity_GG_11131_c0_g1_i1	2
scaffold_17	spliced_intron	14546213	14546347	+	asmbl_18530	none	STRG.20918.1	1	STRG.20918.2,Trinity_GG_11505_c0_g1_i1,Trinity_GG_11505_c0_g1_i2,blat.proc3829881.chain_1765	4
scaffold_4	retained_exon	19443661	19444835	+	asmbl_43492	none	STRG.5530.1	1	STRG.5530.2	1
scaffold_22	starts_in_intron	3783176	3783176	-	asmbl_29947	none	blat.proc3829899.chain_1895	1	blat.proc3829899.chain_1896	1
scaffold_16	ends_in_intron	10564715	10564715	-	asmbl_16495	none	blat.proc3829897.chain_565	1	STRG.19610.1,blat.proc3829897.chain_564	2
scaffold_20	spliced_intron	10384550	10384667	+	asmbl_26113,asmbl_26115	none	STRG.23569.3,STRG.23569.5	2	blat.proc3829883.chain_590	1
scaffold_16	starts_in_intron	430441	430441	-	asmbl_16041,asmbl_16049	none	blat.proc3829897.chain_16,blat.proc3829897.chain_22	2	STRG.19039.1,blat.proc3829897.chain_17,blat.proc3829897.chain_18,blat.proc3829897.chain_19,blat.proc3829897.chain_20,blat.proc3829897.chain_21,blat.proc3829897.chain_23,blat.proc3829897.chain_24,blat.proc3829897.chain_25,blat.proc3829897.chain_26,blat.proc3829897.chain_27	11
scaffold_3	spliced_intron	5951042	5951165	-	asmbl_38833,asmbl_38834,asmbl_38841	none	STRG.3255.1,STRG.3255.2,blat.proc3829887.chain_3044,blat.proc3829887.chain_3045,blat.proc3829887.chain_3048	5	STRG.3255.3,STRG.3255.6,blat.proc3829887.chain_3046,blat.proc3829887.chain_3049	4
scaffold_8	ends_in_intron	3221321	3221321	+	asmbl_51738,asmbl_51739	none	blat.proc3829875.chain_2321	1	STRG.9823.3,STRG.9823.5	2
scaffold_1	spliced_intron	6283987	6285080	-	asmbl_341,asmbl_349,asmbl_351	none	STRG.425.2,STRG.425.4,blat.proc3829887.chain_333	3	STRG.425.7,Trinity_GG_17251_c0_g1_i2,Trinity_GG_17251_c0_g1_i9,blat.proc3829887.chain_329,blat.proc3829887.chain_331	5
scaffold_7	alt_acceptor	8772267	8772268	+	asmbl_50938	none	STRG.9107.2	1	STRG.9107.1,STRG.9107.3,blat.proc3829875.chain_1550,blat.proc3829875.chain_1551	4
scaffold_17	starts_in_intron	3659395	3659395	+	asmbl_17855	none	Trinity_GG_10985_c0_g2_i1,blat.proc3829881.chain_888	2	blat.proc3829881.chain_887	1
scaffold_19	spliced_intron	10791584	10791697	+	asmbl_22460	none	STRG.22407.2	1	STRG.22407.1,Trinity_GG_12373_c0_g1_i1,blat.proc3829881.chain_3320	3
scaffold_14	alt_acceptor	6683547	6683548	-	asmbl_13136	none	STRG.17094.2	1	STRG.17094.1,blat.proc3829895.chain_1794,blat.proc3829895.chain_1795	3
scaffold_8	skipped_exon	17974030	17974808	-	asmbl_53508	none	STRG.10695.2	1	STRG.10695.1,Trinity_GG_22958_c0_g1_i1,blat.proc3829891.chain_2852	3
scaffold_19	alt_acceptor	8478147	8478148	-	asmbl_21509	none	STRG.22304.1,blat.proc3829897.chain_3014	2	STRG.22304.2,blat.proc3829897.chain_3013	2
scaffold_24	skipped_exon	5383776	5385309	+	asmbl_32224	none	STRG.26610.2,blat.proc3829883.chain_3413	2	STRG.26610.1,blat.proc3829883.chain_3415	2
scaffold_11	retained_intron	1285094	1285198	-	asmbl_6396	none	blat.proc3829893.chain_1748	1	STRG.13311.1,STRG.13311.2,blat.proc3829893.chain_1747,blat.proc3829893.chain_1749,blat.proc3829893.chain_1751	5
scaffold_21	alt_donor	10122351	10122352	+	asmbl_28871	none	STRG.24462.2,blat.proc3829883.chain_1541	2	STRG.24462.3	1
scaffold_25	ends_in_intron	9940483	9940483	-	asmbl_34503	none	blat.proc3829901.chain_1069	1	STRG.27802.1	1
scaffold_2	alt_donor	796784	796785	+	asmbl_24126	none	STRG.1556.2	1	STRG.1556.1,Trinity_GG_878_c0_g1_i2	2
scaffold_17	ends_in_intron	8159803	8159803	+	asmbl_18068	none	Trinity_GG_11179_c1_g1_i1	1	STRG.20421.1,STRG.20421.2,blat.proc3829881.chain_1184,blat.proc3829881.chain_1185	4
scaffold_5	ends_in_intron	8539227	8539227	-	asmbl_45594	none	blat.proc3829889.chain_2249	1	STRG.6191.1,STRG.6191.3,STRG.6191.4,blat.proc3829889.chain_2246,blat.proc3829889.chain_2247,blat.proc3829889.chain_2248,blat.proc3829889.chain_2250,blat.proc3829889.chain_2253	8
scaffold_27	retained_intron	157697	157951	-	asmbl_36601,asmbl_36603	none	STRG.28533.2,STRG.28533.3,Trinity_GG_32959_c0_g1_i3,blat.proc3829901.chain_1698	4	STRG.28533.1,blat.proc3829901.chain_1699	2
scaffold_2	starts_in_intron	13897278	13897278	-	asmbl_23545	none	blat.proc3829887.chain_2285	1	STRG.2382.2,blat.proc3829887.chain_2290	2
scaffold_14	starts_in_intron	12762395	12762395	-	asmbl_13587	none	STRG.17572.4,blat.proc3829895.chain_2358	2	STRG.17572.1,STRG.17572.5,blat.proc3829895.chain_2355,blat.proc3829895.chain_2357,blat.proc3829895.chain_2360,blat.proc3829895.chain_2361,blat.proc3829895.chain_2363	7
scaffold_27	spliced_intron	6708854	6709006	+	asmbl_36357,asmbl_36358,asmbl_36359	none	STRG.29026.1,STRG.29026.2,STRG.29026.3	3	STRG.29026.4	1
scaffold_17	starts_in_intron	5725605	5725605	-	asmbl_18993	none	STRG.20261.2,blat.proc3829897.chain_1219	2	STRG.20261.1,STRG.20261.3,blat.proc3829897.chain_1218	3
scaffold_12	alt_donor	7600412	7600413	+	asmbl_8731	none	STRG.14823.1,blat.proc3829877.chain_3316	2	STRG.14823.2	1
scaffold_26	spliced_intron	9315862	9315995	+	asmbl_35737,asmbl_35738,asmbl_35739,asmbl_35740,asmbl_35741,asmbl_35746	none	STRG.28479.1,STRG.28479.2,STRG.28479.3,blat.proc3829885.chain_1519,blat.proc3829885.chain_1520	5	Trinity_GG_15765_c0_g1_i2,blat.proc3829885.chain_1515,blat.proc3829885.chain_1517,blat.proc3829885.chain_1518	4
scaffold_3	skipped_exon	12419601	12421743	+	asmbl_40354	none	STRG.3634.1,blat.proc3829873.chain_43	2	STRG.3634.2,blat.proc3829873.chain_41	2
scaffold_20	starts_in_intron	9463229	9463229	-	asmbl_26966	none	blat.proc3829899.chain_498	1	STRG.23473.1,blat.proc3829899.chain_499	2
scaffold_23	ends_in_intron	10889333	10889333	+	asmbl_31176	none	STRG.26266.2	1	STRG.26266.1,blat.proc3829883.chain_3183	2
scaffold_18	starts_in_intron	8437428	8437428	-	asmbl_20048	none	STRG.21514.3	1	STRG.21514.1,STRG.21514.2,Trinity_GG_29005_c0_g1_i2,blat.proc3829897.chain_2280,blat.proc3829897.chain_2281	5
scaffold_18	spliced_intron	7943320	7944087	-	asmbl_20025	none	STRG.21483.2	1	STRG.21483.1,Trinity_GG_29025_c0_g1_i2,blat.proc3829897.chain_2325	3
scaffold_2	skipped_exon	6510601	6512748	-	asmbl_23232	none	STRG.2013.1,blat.proc3829887.chain_1931	2	STRG.2013.3	1
scaffold_3	alt_donor	19901546	19901547	-	asmbl_39625	none	STRG.4103.2	1	STRG.4103.1,blat.proc3829889.chain_151	2
scaffold_11	alt_donor	17382933	17382934	-	asmbl_7246	none	STRG.14391.2	1	STRG.14391.1,blat.proc3829893.chain_2760,blat.proc3829893.chain_2761	3
scaffold_4	retained_exon	14318900	14318970	-	asmbl_41788	none	STRG.5045.3,blat.proc3829889.chain_1095	2	STRG.5045.2,blat.proc3829889.chain_1093	2
scaffold_10	retained_exon	1491217	1492523	-	asmbl_2980	none	blat.proc3829893.chain_392	1	STRG.12017.3,blat.proc3829893.chain_389	2
scaffold_20	skipped_exon	1616762	1619278	-	asmbl_26518	none	STRG.22881.3	1	STRG.22881.1,STRG.22881.2,STRG.22881.4	3
scaffold_10	ends_in_intron	950907	950907	+	asmbl_4176	none	Trinity_GG_6645_c0_g1_i5,blat.proc3829877.chain_652	2	STRG.11969.1,STRG.11969.2,Trinity_GG_6645_c0_g1_i1,Trinity_GG_6645_c0_g1_i3,Trinity_GG_6645_c0_g1_i6,blat.proc3829877.chain_649,blat.proc3829877.chain_650,blat.proc3829877.chain_653	8
scaffold_6	alternate_exon	12554879	12555019	-	asmbl_48759	none	STRG.8010.2	1	STRG.8010.3,blat.proc3829891.chain_322	2
scaffold_22	ends_in_intron	18269	18269	+	asmbl_29088	none	Trinity_GG_13605_c0_g1_i2,blat.proc3829883.chain_1662	2	STRG.24644.1,Trinity_GG_13605_c0_g1_i1,blat.proc3829883.chain_1661	3
scaffold_27	starts_in_intron	2538775	2538775	+	asmbl_36050	none	Trinity_GG_15899_c0_g1_i1,blat.proc3829885.chain_1765	2	STRG.28702.1,blat.proc3829885.chain_1764	2
scaffold_1	alternate_exon	22371837	22372575	+	asmbl_2681	none	STRG.1490.6	1	STRG.1490.1	1
scaffold_21	retained_intron	5536369	5536490	-	asmbl_27698,asmbl_27699,asmbl_27701,asmbl_27704	none	STRG.24073.3,Trinity_GG_30443_c0_g1_i6,blat.proc3829899.chain_1163,blat.proc3829899.chain_1166,blat.proc3829899.chain_1167	5	STRG.24073.1,STRG.24073.2,blat.proc3829899.chain_1165,blat.proc3829899.chain_1168	4
scaffold_19	retained_exon	12237937	12237981	+	asmbl_22573	none	STRG.22541.1,blat.proc3829881.chain_3479	2	blat.proc3829881.chain_3477	1
scaffold_2	spliced_intron	15872204	15872339	-	asmbl_23675,asmbl_23677	none	blat.proc3829887.chain_2388,blat.proc3829887.chain_2391	2	blat.proc3829887.chain_2389	1
scaffold_15	skipped_exon	15320751	15323082	+	asmbl_14698	none	STRG.18911.1	1	STRG.18911.2,Trinity_GG_10357_c0_g1_i1,blat.proc3829879.chain_3469	3
scaffold_17	alt_acceptor	4693416	4693417	+	asmbl_17918	none	STRG.20195.1	1	STRG.20195.2	1
scaffold_3	alt_acceptor	18937856	18937857	+	asmbl_40706	none	STRG.4063.4	1	STRG.4063.1,STRG.4063.2,STRG.4063.3	3
scaffold_4	alt_donor	4414352	4414353	+	asmbl_42592	none	blat.proc3829873.chain_693	1	STRG.4344.2,blat.proc3829873.chain_683,blat.proc3829873.chain_685,blat.proc3829873.chain_691	4
scaffold_11	alternate_exon	3543902	3543987	+	asmbl_5411	none	STRG.13470.2,Trinity_GG_7395_c0_g1_i2,blat.proc3829877.chain_1943	3	STRG.13470.1,blat.proc3829877.chain_1944	2
scaffold_3	spliced_intron	7708984	7709096	-	asmbl_38928,asmbl_38929,asmbl_38931,asmbl_38932	none	STRG.3361.2,blat.proc3829887.chain_3171,blat.proc3829887.chain_3173,blat.proc3829887.chain_3174	4	blat.proc3829887.chain_3176	1
scaffold_20	starts_in_intron	2052513	2052513	+	asmbl_25617	none	Trinity_GG_12620_c0_g1_i2	1	STRG.22925.2	1
scaffold_27	alternate_exon	8934407	8934538	-	asmbl_37075	none	STRG.29117.2	1	STRG.29117.1	1
scaffold_5	retained_intron	10970546	10970703	+	asmbl_44385	none	blat.proc3829873.chain_2527	1	STRG.6366.1,STRG.6366.2,blat.proc3829873.chain_2526,blat.proc3829873.chain_2528	4
scaffold_2	retained_intron	1301947	1302291	+	asmbl_24198	none	STRG.1611.2,Trinity_GG_927_c0_g1_i4,blat.proc3829871.chain_1709	3	STRG.1611.1,Trinity_GG_927_c0_g1_i1,blat.proc3829871.chain_1707	3
scaffold_6	retained_intron	8460271	8460406	+	asmbl_47061,asmbl_47063	none	STRG.7708.1,STRG.7708.4,blat.proc3829875.chain_73	3	STRG.7708.3	1
scaffold_3	retained_intron	17845439	17845840	+	asmbl_40666,asmbl_40668	none	STRG.4008.4,blat.proc3829873.chain_343	2	STRG.4008.2,STRG.4008.3,blat.proc3829873.chain_342	3
scaffold_2	starts_in_intron	16399581	16399581	+	asmbl_25166,asmbl_25168	none	STRG.2579.2,STRG.2579.3,Trinity_GG_1460_c0_g1_i4,blat.proc3829871.chain_2773	4	STRG.2579.1,blat.proc3829871.chain_2772	2
scaffold_13	spliced_intron	352660	353097	-	asmbl_9268,asmbl_9269,asmbl_9270,asmbl_9271,asmbl_9272,asmbl_9273	none	STRG.15424.1,Trinity_GG_25667_c0_g1_i10,Trinity_GG_25667_c0_g1_i4,Trinity_GG_25667_c0_g1_i5,Trinity_GG_25667_c0_g1_i6,Trinity_GG_25667_c0_g1_i7,Trinity_GG_25667_c0_g1_i8,blat.proc3829895.chain_167,blat.proc3829895.chain_168,blat.proc3829895.chain_169,blat.proc3829895.chain_170,blat.proc3829895.chain_171,blat.proc3829895.chain_172	13	blat.proc3829895.chain_173,blat.proc3829895.chain_174	2
scaffold_19	alt_acceptor	827111	827112	-	asmbl_21210,asmbl_21211,asmbl_21215	none	STRG.21862.1,STRG.21862.2,STRG.21862.3,STRG.21862.5,blat.proc3829897.chain_2632,blat.proc3829897.chain_2633	6	STRG.21862.4,blat.proc3829897.chain_2631	2
scaffold_12	starts_in_intron	4611647	4611647	-	asmbl_7550	none	blat.proc3829893.chain_3000	1	STRG.14626.1,STRG.14626.2,STRG.14626.3,STRG.14626.4,blat.proc3829893.chain_2996,blat.proc3829893.chain_2997,blat.proc3829893.chain_2998,blat.proc3829893.chain_2999,blat.proc3829893.chain_3001	9
scaffold_15	alt_acceptor	4230503	4230504	+	asmbl_14069,asmbl_14070,asmbl_14071,asmbl_14073,asmbl_14074,asmbl_14075,asmbl_14076	none	STRG.18160.1,STRG.18160.2,Trinity_GG_9974_c0_g1_i8,blat.proc3829879.chain_2806,blat.proc3829879.chain_2807,blat.proc3829879.chain_2809,blat.proc3829879.chain_2810,blat.proc3829879.chain_2811,blat.proc3829879.chain_2813,blat.proc3829879.chain_2814	10	blat.proc3829879.chain_2808	1
scaffold_17	starts_in_intron	6800931	6800931	+	asmbl_18004	none	STRG.20322.4	1	STRG.20322.1,STRG.20322.2,STRG.20322.3,blat.proc3829881.chain_1106,blat.proc3829881.chain_1107,blat.proc3829881.chain_1108	6
scaffold_20	alt_donor	9185237	9185238	+	asmbl_25997	none	blat.proc3829883.chain_551,blat.proc3829899.chain_463	2	STRG.23451.1,blat.proc3829883.chain_552	2
scaffold_5	alternate_exon	4660585	4660634	-	asmbl_45366	none	STRG.5915.2	1	STRG.5915.1	1
scaffold_9	spliced_intron	2502740	2502833	-	asmbl_54842	none	STRG.10892.1,blat.proc3829891.chain_3068	2	STRG.10892.2	1
scaffold_13	retained_intron	894021	894643	-	asmbl_9338,asmbl_9339,asmbl_9340,asmbl_9341,asmbl_9342,asmbl_9344,asmbl_9345,asmbl_9346,asmbl_9347	none	STRG.15448.1,STRG.15448.2,STRG.15448.3,STRG.15448.4,STRG.15448.5,STRG.15448.6,Trinity_GG_25690_c0_g1_i4,blat.proc3829895.chain_212,blat.proc3829895.chain_213,blat.proc3829895.chain_214,blat.proc3829895.chain_215,blat.proc3829895.chain_216,blat.proc3829895.chain_219	13	STRG.15448.7	1
scaffold_5	alternate_exon	10525044	10527505	+	asmbl_44346	none	Trinity_GG_3449_c0_g1_i2,blat.proc3829873.chain_2470	2	STRG.6331.1,STRG.6331.2,Trinity_GG_3449_c0_g1_i1,blat.proc3829873.chain_2469	4
scaffold_7	skipped_exon	1233710	1235447	+	asmbl_50474,asmbl_50476,asmbl_50477,asmbl_50478	none	STRG.8627.3,STRG.8627.7,STRG.8627.9,Trinity_GG_4740_c0_g1_i16,blat.proc3829875.chain_1042	5	STRG.8627.5	1
scaffold_15	alt_donor	4964556	4964557	+	asmbl_14123,asmbl_14125,asmbl_14127	none	STRG.18193.3,blat.proc3829879.chain_2759,blat.proc3829879.chain_2763	3	STRG.18193.1,Trinity_GG_9948_c0_g1_i1,Trinity_GG_9948_c0_g1_i3,blat.proc3829879.chain_2760,blat.proc3829879.chain_2761,blat.proc3829879.chain_2762,blat.proc3829879.chain_2764	7
scaffold_5	alternate_exon	10654078	10655800	+	asmbl_44353	none	STRG.6337.1,blat.proc3829873.chain_2500	2	STRG.6337.2	1
scaffold_3	alt_donor	7216567	7216568	-	asmbl_38907	none	STRG.3322.1,blat.proc3829887.chain_3084	2	STRG.3322.2,blat.proc3829887.chain_3083,blat.proc3829887.chain_3085	3
scaffold_18	alternate_exon	198932	204473	+	asmbl_20300	none	STRG.20965.1,blat.proc3829881.chain_1839	2	Trinity_GG_11543_c0_g1_i1,blat.proc3829881.chain_1838	2
scaffold_20	spliced_intron	9825448	9825623	-	asmbl_26983,asmbl_26984,asmbl_26985	none	STRG.23515.1,blat.proc3829899.chain_527,blat.proc3829899.chain_529,blat.proc3829899.chain_530	4	STRG.23515.2,blat.proc3829899.chain_528	2
scaffold_13	retained_exon	15101050	15101105	+	asmbl_11469	none	blat.proc3829879.chain_1307	1	STRG.16547.1,blat.proc3829879.chain_1308	2
scaffold_11	retained_intron	9018627	9018713	-	asmbl_6887	none	Trinity_GG_24749_c0_g2_i1,blat.proc3829893.chain_2280	2	STRG.13926.1,STRG.13926.2,blat.proc3829893.chain_2276,blat.proc3829893.chain_2277,blat.proc3829893.chain_2278,blat.proc3829893.chain_2279	6
scaffold_11	starts_in_intron	8725752	8725752	+	asmbl_5790	none	STRG.13889.5,Trinity_GG_7670_c3_g1_i1,blat.proc3829877.chain_2409	3	STRG.13889.2	1
scaffold_6	spliced_intron	11668222	11669586	+	asmbl_47293	none	STRG.7953.1,Trinity_GG_4350_c0_g1_i2,blat.proc3829875.chain_325	3	Trinity_GG_4350_c0_g1_i1,blat.proc3829875.chain_326	2
scaffold_2	alternate_exon	14128042	14132762	-	asmbl_23573,asmbl_23574,asmbl_23575	none	STRG.2406.1,blat.proc3829887.chain_2196,blat.proc3829887.chain_2197,blat.proc3829887.chain_2198	4	STRG.2406.3	1
scaffold_10	alt_donor	4057950	4057951	-	asmbl_3165	none	STRG.12237.7,Trinity_GG_23849_c2_g1_i1,blat.proc3829893.chain_711,blat.proc3829893.chain_714	4	STRG.12237.6,blat.proc3829893.chain_707	2
scaffold_14	starts_in_intron	9995305	9995305	+	asmbl_12289	none	Trinity_GG_9556_c0_g1_i3,blat.proc3829879.chain_2082	2	STRG.17352.3,blat.proc3829879.chain_2080,blat.proc3829879.chain_2081	3
scaffold_2	retained_intron	9322568	9323761	-	asmbl_23401	none	STRG.2176.3	1	STRG.2176.2	1
scaffold_13	starts_in_intron	11438780	11438780	-	asmbl_10058	none	blat.proc3829895.chain_1038	1	STRG.16288.1,STRG.16288.2,blat.proc3829895.chain_1037,blat.proc3829895.chain_1039	4
scaffold_5	retained_exon	238215	238313	-	asmbl_45151	none	STRG.5594.1,Trinity_GG_20172_c0_g1_i1,blat.proc3829889.chain_1710	3	STRG.5594.3	1
scaffold_17	spliced_intron	9592999	9593177	-	asmbl_19228,asmbl_19230	none	STRG.20568.2,Trinity_GG_28580_c0_g1_i1,blat.proc3829897.chain_1516,blat.proc3829897.chain_1517	4	STRG.20568.3,blat.proc3829897.chain_1518	2
scaffold_26	ends_in_intron	427102	427102	+	asmbl_35213	none	STRG.27851.1	1	STRG.27850.1,blat.proc3829885.chain_854	2
scaffold_20	alt_donor	11924841	11924842	+	asmbl_26255	none	STRG.23680.2,blat.proc3829883.chain_818	2	STRG.23680.4	1
scaffold_21	ends_in_intron	702369	702369	-	asmbl_27375	none	Trinity_GG_30201_c0_g1_i3,blat.proc3829899.chain_715	2	STRG.23744.1,STRG.23744.2,Trinity_GG_30201_c0_g1_i1,Trinity_GG_30201_c0_g1_i2,blat.proc3829899.chain_714,blat.proc3829899.chain_716	6
scaffold_14	starts_in_intron	13601303	13601303	+	asmbl_12472	none	Trinity_GG_9688_c0_g1_i2,blat.proc3829879.chain_2308	2	STRG.17629.1,STRG.17629.2,blat.proc3829879.chain_2306,blat.proc3829879.chain_2307	4
scaffold_10	ends_in_intron	4050009	4050009	+	asmbl_4383	none	Trinity_GG_6793_c1_g1_i3,blat.proc3829877.chain_910	2	STRG.12236.1,Trinity_GG_6793_c1_g1_i2,blat.proc3829877.chain_912	3
scaffold_4	skipped_exon	5033786	5035431	-	asmbl_41290	none	STRG.4398.2	1	STRG.4398.1	1
scaffold_10	alternate_exon	11882010	11882094	-	asmbl_3699	none	STRG.12820.3	1	STRG.12820.1,STRG.12820.2	2
scaffold_12	skipped_exon	7172399	7173215	+	asmbl_8684	none	STRG.14775.1	1	STRG.14775.2,blat.proc3829877.chain_3241,blat.proc3829877.chain_3242	3
scaffold_11	spliced_intron	17375833	17376038	+	asmbl_6202,asmbl_6205	none	STRG.14392.1,STRG.14392.2,blat.proc3829877.chain_2826	3	Trinity_GG_7898_c0_g1_i3,blat.proc3829877.chain_2827	2
scaffold_15	spliced_intron	15409993	15410185	+	asmbl_14724	none	STRG.18921.6	1	blat.proc3829879.chain_3516	1
scaffold_2	spliced_intron	899505	899602	+	asmbl_24165,asmbl_24166,asmbl_24167	none	STRG.1568.1,STRG.1568.2,Trinity_GG_900_c0_g1_i4,blat.proc3829871.chain_1642,blat.proc3829871.chain_1644	5	Trinity_GG_900_c0_g1_i3,Trinity_GG_900_c0_g1_i5	2
scaffold_13	retained_exon	13974489	13974623	+	asmbl_11397,asmbl_11398	none	blat.proc3829879.chain_1168,blat.proc3829879.chain_1169	2	blat.proc3829879.chain_1167	1
scaffold_5	spliced_intron	16937471	16937586	-	asmbl_46162,asmbl_46163	none	STRG.6865.1,blat.proc3829889.chain_2909,blat.proc3829889.chain_2910	3	blat.proc3829889.chain_2911	1
scaffold_10	alt_donor	46070	46071	-	asmbl_2830	none	STRG.11895.2,Trinity_GG_23605_c0_g1_i1,blat.proc3829893.chain_294	3	STRG.11895.1	1
scaffold_7	spliced_intron	15270861	15271287	+	asmbl_51308,asmbl_51312,asmbl_51314,asmbl_51315	none	STRG.9532.2,STRG.9532.4,blat.proc3829875.chain_1984,blat.proc3829875.chain_1985,blat.proc3829875.chain_1987	5	STRG.9532.3,blat.proc3829875.chain_1981,blat.proc3829875.chain_1986	3
scaffold_8	spliced_intron	12625677	12626028	-	asmbl_53213,asmbl_53214	none	STRG.10429.1,blat.proc3829891.chain_2557,blat.proc3829891.chain_2558	3	blat.proc3829891.chain_2559,blat.proc3829891.chain_2560	2
scaffold_19	spliced_intron	11168790	11168935	+	asmbl_22474	none	STRG.22441.1,blat.proc3829881.chain_3333	2	blat.proc3829881.chain_3332,blat.proc3829881.chain_3335	2
scaffold_14	spliced_intron	1069987	1070084	+	asmbl_11764,asmbl_11765,asmbl_11767,asmbl_11768,asmbl_11769,asmbl_11770,asmbl_11771,asmbl_11772,asmbl_11773	none	STRG.16754.1,STRG.16754.2,STRG.16754.3,STRG.16754.4,blat.proc3829879.chain_1436,blat.proc3829879.chain_1439,blat.proc3829879.chain_1440,blat.proc3829879.chain_1441,blat.proc3829879.chain_1442	9	Trinity_GG_9205_c0_g1_i2,Trinity_GG_9205_c0_g1_i3,blat.proc3829879.chain_1437,blat.proc3829879.chain_1438	4
scaffold_14	spliced_intron	3161368	3162176	+	asmbl_11880,asmbl_11883,asmbl_11885,asmbl_11890,asmbl_11892,asmbl_11895,asmbl_11898	none	STRG.16893.1,STRG.16893.2,STRG.16893.3,blat.proc3829879.chain_1626,blat.proc3829879.chain_1632,blat.proc3829879.chain_1633,blat.proc3829879.chain_1639	7	blat.proc3829879.chain_1625,blat.proc3829879.chain_1629,blat.proc3829879.chain_1631,blat.proc3829879.chain_1635,blat.proc3829879.chain_1636	5
scaffold_1	ends_in_intron	170152	170152	+	asmbl_1399	none	Trinity_GG_21_c0_g2_i1,blat.proc3829871.chain_35	2	STRG.14.1,Trinity_GG_21_c0_g1_i1,Trinity_GG_21_c0_g2_i2,blat.proc3829871.chain_33,blat.proc3829871.chain_36	5
scaffold_10	retained_intron	556785	556911	-	asmbl_2886,asmbl_2887	none	STRG.11928.2,blat.proc3829893.chain_358	2	STRG.11928.1,Trinity_GG_23640_c0_g1_i2,blat.proc3829893.chain_356	3
scaffold_27	alt_acceptor	7522243	7522244	+	asmbl_36423,asmbl_36424	none	STRG.29096.1,STRG.29096.4	2	STRG.29096.2,STRG.29096.3,blat.proc3829885.chain_2227	3
scaffold_5	spliced_intron	9704095	9704464	-	asmbl_45680	none	blat.proc3829889.chain_2376	1	blat.proc3829889.chain_2369,blat.proc3829889.chain_2370,blat.proc3829889.chain_2373	3
scaffold_25	starts_in_intron	5785528	5785528	+	asmbl_33579	none	Trinity_GG_15145_c0_g1_i2,blat.proc3829885.chain_507	2	STRG.27456.1,STRG.27456.2,STRG.27456.3,blat.proc3829885.chain_505,blat.proc3829885.chain_509	5
scaffold_8	retained_intron	4186166	4186288	+	asmbl_51806	none	blat.proc3829875.chain_2408	1	STRG.9886.1,blat.proc3829875.chain_2406,blat.proc3829875.chain_2409	3
scaffold_10	alternate_exon	11969824	11971461	+	asmbl_4792,asmbl_4794	none	blat.proc3829877.chain_1319,blat.proc3829877.chain_1322	2	STRG.12831.2,Trinity_GG_7032_c0_g1_i16,blat.proc3829877.chain_1316	3
scaffold_4	retained_exon	6282538	6282644	-	asmbl_41407,asmbl_41408,asmbl_41409,asmbl_41413	none	STRG.4498.1,STRG.4498.2,Trinity_GG_19560_c0_g1_i1,Trinity_GG_19560_c0_g1_i6,Trinity_GG_19560_c0_g1_i9,blat.proc3829889.chain_662,blat.proc3829889.chain_663,blat.proc3829889.chain_666,blat.proc3829889.chain_668	9	Trinity_GG_19560_c0_g1_i3,blat.proc3829889.chain_664	2
scaffold_1	spliced_intron	19006450	19006518	+	asmbl_2559	none	STRG.1322.1	1	STRG.1322.2,STRG.1322.4	2
scaffold_8	alternate_exon	4850935	4851055	-	asmbl_52798,asmbl_52799	none	STRG.9941.1,blat.proc3829891.chain_2051,blat.proc3829891.chain_2052,blat.proc3829891.chain_2053	4	STRG.9941.2,blat.proc3829891.chain_2056	2
scaffold_5	spliced_intron	10970546	10970703	+	asmbl_44383,asmbl_44384,asmbl_44386	none	STRG.6366.1,STRG.6366.2,blat.proc3829873.chain_2526,blat.proc3829873.chain_2528	4	blat.proc3829873.chain_2527	1
scaffold_3	alt_donor	12906304	12906305	-	asmbl_39189	none	STRG.3674.1,blat.proc3829887.chain_3452	2	STRG.3674.2,blat.proc3829887.chain_3451	2
scaffold_2	alt_donor	20130169	20130170	-	asmbl_23901	none	STRG.2841.2	1	STRG.2841.1,blat.proc3829887.chain_2671	2
scaffold_1	retained_exon	18524286	18524340	-	asmbl_1117	none	STRG.1299.2,blat.proc3829887.chain_1159	2	STRG.1299.1,blat.proc3829887.chain_1158	2
scaffold_23	alt_donor	4899316	4899317	+	asmbl_30833	none	STRG.25862.1,Trinity_GG_14276_c0_g1_i1,blat.proc3829883.chain_2748	3	STRG.25862.2,Trinity_GG_14276_c0_g1_i4,blat.proc3829883.chain_2747	3
scaffold_3	retained_exon	19885176	19885238	-	asmbl_39615,asmbl_39616	none	STRG.4100.1,Trinity_GG_19264_c1_g1_i1,Trinity_GG_19264_c1_g1_i7,blat.proc3829889.chain_140,blat.proc3829889.chain_141	5	STRG.4100.2,STRG.4100.4,Trinity_GG_19264_c1_g1_i4,blat.proc3829889.chain_142	4
scaffold_11	alternate_exon	15797569	15802934	+	asmbl_6111	none	STRG.14308.1	1	STRG.14308.2	1
scaffold_4	retained_intron	14648132	14648297	-	asmbl_41810,asmbl_41813,asmbl_41816	none	STRG.5094.3,blat.proc3829889.chain_1118,blat.proc3829889.chain_1119	3	STRG.5094.1,STRG.5094.2,blat.proc3829889.chain_1117,blat.proc3829889.chain_1121,blat.proc3829889.chain_1122,blat.proc3829889.chain_1123	6
scaffold_18	alternate_exon	5909451	5910190	+	asmbl_20651	none	STRG.21332.2,blat.proc3829881.chain_2260	2	STRG.21332.1,Trinity_GG_11755_c0_g1_i2,blat.proc3829881.chain_2259	3
scaffold_11	ends_in_intron	8282525	8282525	+	asmbl_5707	none	blat.proc3829877.chain_2273	1	STRG.13824.1,blat.proc3829877.chain_2274	2
scaffold_17	alt_acceptor	14370809	14370810	+	asmbl_18513	none	STRG.20902.2	1	STRG.20902.1,Trinity_GG_11483_c0_g1_i2,blat.proc3829881.chain_1730	3
scaffold_1	alt_acceptor	10504959	10504960	+	asmbl_2000	none	STRG.683.1,blat.proc3829871.chain_637	2	STRG.683.2	1
scaffold_16	spliced_intron	11303194	11303588	+	asmbl_17378	none	STRG.19647.2,Trinity_GG_10757_c1_g1_i3,blat.proc3829881.chain_509	3	STRG.19647.1,Trinity_GG_10757_c1_g1_i1,blat.proc3829881.chain_507,blat.proc3829881.chain_508	4
scaffold_1	alternate_exon	14420418	14420443	-	asmbl_926	none	STRG.1038.3	1	STRG.1038.1,STRG.1038.2,blat.proc3829887.chain_937	3
scaffold_18	alt_donor	7219069	7219070	-	asmbl_19968	none	STRG.21410.1	1	STRG.21410.2	1
scaffold_4	alternate_exon	10465486	10466409	+	asmbl_42997	none	STRG.4790.1,blat.proc3829873.chain_1086	2	STRG.4790.2,blat.proc3829873.chain_1087	2
scaffold_2	starts_in_intron	13064186	13064186	+	asmbl_24843	none	Trinity_GG_1323_c0_g1_i2,Trinity_GG_1323_c0_g1_i8,blat.proc3829871.chain_2460,blat.proc3829871.chain_2462	4	STRG.2330.1,STRG.2330.2,blat.proc3829871.chain_2456,blat.proc3829871.chain_2457,blat.proc3829871.chain_2458,blat.proc3829871.chain_2461	6
scaffold_2	alt_acceptor	7784363	7784364	+	asmbl_24607	none	STRG.2076.6,Trinity_GG_1189_c0_g1_i14,blat.proc3829871.chain_2204	3	STRG.2076.4,STRG.2076.7,blat.proc3829871.chain_2202,blat.proc3829871.chain_2207,blat.proc3829871.chain_2213	5
scaffold_12	alt_acceptor	6420184	6420185	+	asmbl_8642,asmbl_8643,asmbl_8644	none	STRG.14730.2,STRG.14730.3,STRG.14730.4	3	STRG.14730.1,blat.proc3829877.chain_3201,blat.proc3829877.chain_3203,blat.proc3829877.chain_3204,blat.proc3829877.chain_3205	5
scaffold_1	spliced_intron	7801216	7801376	-	asmbl_448	none	STRG.539.1,blat.proc3829887.chain_416	2	blat.proc3829887.chain_418	1
scaffold_1	alt_donor	18339228	18339229	+	asmbl_2538	none	STRG.1291.1,blat.proc3829871.chain_1250	2	STRG.1291.2	1
scaffold_2	retained_exon	924482	926099	+	asmbl_24176	none	STRG.1569.4	1	STRG.1569.1,blat.proc3829871.chain_1534,blat.proc3829871.chain_1537	3
scaffold_9	starts_in_intron	4206117	4206117	+	asmbl_53925	none	blat.proc3829875.chain_3427	1	STRG.11013.3,STRG.11013.4,blat.proc3829875.chain_3429	3
scaffold_1	spliced_intron	18784825	18784961	-	asmbl_1126	none	STRG.1308.2,blat.proc3829887.chain_1206	2	STRG.1308.1,blat.proc3829887.chain_1205	2
scaffold_23	retained_exon	7277616	7277667	-	asmbl_31740,asmbl_31742,asmbl_31744	none	STRG.26034.1,STRG.26034.2,STRG.26034.3,blat.proc3829899.chain_3127	4	STRG.26034.4	1
scaffold_11	retained_intron	9281871	9282068	+	asmbl_5844	none	STRG.13960.2,Trinity_GG_7705_c0_g1_i1,blat.proc3829877.chain_2463	3	STRG.13960.1,Trinity_GG_7705_c0_g1_i3,blat.proc3829877.chain_2464	3
scaffold_2	alternate_exon	17615256	17619276	+	asmbl_25221	none	STRG.2650.3,Trinity_GG_1511_c0_g1_i1,Trinity_GG_1513_c0_g1_i1,blat.proc3829871.chain_2863	4	blat.proc3829871.chain_2857	1
scaffold_1	alternate_exon	20743643	20744829	-	asmbl_1198	none	STRG.1419.1,blat.proc3829887.chain_1306	2	blat.proc3829887.chain_1304	1
scaffold_1	retained_intron	1216033	1216212	-	asmbl_48	none	Trinity_GG_17052_c0_g1_i3,blat.proc3829885.chain_3728	2	STRG.64.1,STRG.64.2,STRG.64.3,Trinity_GG_17052_c0_g1_i1,blat.proc3829885.chain_3726,blat.proc3829885.chain_3727	6
scaffold_1	retained_exon	12464320	12464403	-	asmbl_726	none	STRG.864.2	1	STRG.864.3,STRG.864.4	2
scaffold_8	spliced_intron	16499747	16501670	-	asmbl_53406,asmbl_53411,asmbl_53413,asmbl_53414,asmbl_53415,asmbl_53416,asmbl_53421,asmbl_53422,asmbl_53423,asmbl_53424,asmbl_53427,asmbl_53428,asmbl_53430	none	STRG.10621.1,STRG.10621.2,STRG.10621.4,STRG.10621.5,Trinity_GG_22960_c0_g1_i18,Trinity_GG_22960_c0_g1_i19,Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2857,blat.proc3829891.chain_2862,blat.proc3829891.chain_2863,blat.proc3829891.chain_2864,blat.proc3829891.chain_2865,blat.proc3829891.chain_2868,blat.proc3829891.chain_2869,blat.proc3829891.chain_2870,blat.proc3829891.chain_2872	20	STRG.10621.3,blat.proc3829891.chain_2859,blat.proc3829891.chain_2867,blat.proc3829891.chain_2871	4
scaffold_15	alt_acceptor	2071378	2071379	-	asmbl_15000	none	STRG.17986.1	1	STRG.17986.2	1
scaffold_4	alt_donor	16706163	16706164	-	asmbl_41955	none	STRG.5250.1,blat.proc3829889.chain_1309	2	STRG.5250.2,blat.proc3829889.chain_1308	2
scaffold_6	alternate_exon	13273017	13273059	+	asmbl_47452	none	STRG.8085.3,blat.proc3829875.chain_490	2	STRG.8085.2	1
scaffold_7	alt_donor	7923708	7923709	-	asmbl_49793	none	blat.proc3829891.chain_1304	1	STRG.9028.1,blat.proc3829891.chain_1305,blat.proc3829891.chain_1306	3
scaffold_13	spliced_intron	7935604	7935878	-	asmbl_9874,asmbl_9877	none	STRG.16055.1,blat.proc3829895.chain_798,blat.proc3829895.chain_799	3	STRG.16055.2,STRG.16055.3,blat.proc3829895.chain_800,blat.proc3829895.chain_803	4
scaffold_6	alt_donor	6999952	6999953	+	asmbl_46974	none	STRG.7607.2,blat.proc3829873.chain_3702	2	STRG.7607.1,STRG.7607.3	2
scaffold_25	starts_in_intron	9431572	9431572	+	asmbl_33804	none	Trinity_GG_15317_c1_g1_i2,blat.proc3829885.chain_782	2	STRG.27738.1,STRG.27738.2,Trinity_GG_15317_c0_g1_i2,blat.proc3829885.chain_781	4
scaffold_24	retained_intron	6833657	6834175	+	asmbl_32352	none	Trinity_GG_14799_c1_g1_i1,blat.proc3829883.chain_3657,blat.proc3829883.chain_3664	3	STRG.26717.1,STRG.26717.4,blat.proc3829883.chain_3660	3
scaffold_2	retained_exon	17614275	17614349	+	asmbl_25219	none	STRG.2650.1,Trinity_GG_1507_c1_g1_i1,blat.proc3829871.chain_2855,blat.proc3829871.chain_2858	4	STRG.2650.2	1
scaffold_14	ends_in_intron	7448442	7448442	-	asmbl_13190,asmbl_13193	none	STRG.17171.4,blat.proc3829895.chain_1736	2	STRG.17171.1,STRG.17171.2,STRG.17171.3,blat.proc3829895.chain_1735	4
scaffold_21	retained_intron	11570695	11570754	-	asmbl_28156	none	STRG.24610.1	1	STRG.24610.2	1
scaffold_13	retained_exon	6048623	6048724	-	asmbl_9728,asmbl_9729	none	STRG.15900.2,blat.proc3829895.chain_628,blat.proc3829895.chain_630	3	STRG.15900.4,blat.proc3829895.chain_629	2
scaffold_28	retained_intron	3523207	3523344	-	asmbl_37481	none	blat.proc3829901.chain_2648	1	STRG.29548.1	1
scaffold_4	spliced_intron	4371150	4371554	+	asmbl_42566	none	STRG.4336.1,blat.proc3829873.chain_723	2	blat.proc3829873.chain_724	1
scaffold_26	alt_donor	3519197	3519198	+	asmbl_35315	none	STRG.28012.1,blat.proc3829885.chain_980	2	STRG.28012.2,blat.proc3829885.chain_979	2
scaffold_2	alt_acceptor	3995535	3995536	+	asmbl_24347	none	STRG.1836.1,blat.proc3829871.chain_1890	2	STRG.1836.2,blat.proc3829871.chain_1889	2
scaffold_4	retained_intron	8427334	8427438	-	asmbl_41514	none	blat.proc3829889.chain_776	1	STRG.4672.2,blat.proc3829889.chain_775	2
scaffold_10	ends_in_intron	13771900	13771900	-	asmbl_3832	none	STRG.12967.2	1	STRG.12967.1,blat.proc3829893.chain_1492,blat.proc3829893.chain_1493	3
scaffold_1	spliced_intron	15880705	15881317	+	asmbl_2431	none	STRG.1112.1,Trinity_GG_675_c0_g1_i1,blat.proc3829871.chain_1212	3	STRG.1112.2,Trinity_GG_675_c0_g2_i1,blat.proc3829871.chain_1213	3
scaffold_4	spliced_intron	13434608	13434816	-	asmbl_41742	none	STRG.4981.1,blat.proc3829889.chain_989	2	blat.proc3829889.chain_988	1
scaffold_3	skipped_exon	19884864	19885401	-	asmbl_39614,asmbl_39619	none	STRG.4100.2,STRG.4100.4,Trinity_GG_19264_c1_g1_i4,blat.proc3829889.chain_142	4	STRG.4100.1,Trinity_GG_19264_c1_g1_i1,Trinity_GG_19264_c1_g1_i7,blat.proc3829889.chain_140,blat.proc3829889.chain_141	5
scaffold_9	ends_in_intron	13301342	13301342	-	asmbl_55388	none	Trinity_GG_23413_c1_g1_i2	1	STRG.11625.1,STRG.11625.2,STRG.11625.3,STRG.11625.4,STRG.11625.5,STRG.11625.6,STRG.11625.7	7
scaffold_3	spliced_intron	1089470	1089642	+	asmbl_39786,asmbl_39787	none	STRG.2937.2,STRG.2937.3	2	STRG.2937.1,blat.proc3829871.chain_3056	2
scaffold_2	starts_in_intron	6543530	6543530	+	asmbl_24511	none	Trinity_GG_1136_c0_g1_i2,blat.proc3829871.chain_2070	2	STRG.2021.1,blat.proc3829871.chain_2071	2
scaffold_12	alternate_exon	4102455	4102700	+	asmbl_8541	none	STRG.14584.1	1	STRG.14584.3	1
scaffold_5	alt_acceptor	6618028	6618029	-	asmbl_45506	none	STRG.6060.2	1	STRG.6060.1,blat.proc3829889.chain_2129,blat.proc3829889.chain_2130	3
scaffold_12	starts_in_intron	10165914	10165914	-	asmbl_7857	none	blat.proc3829893.chain_3368	1	STRG.14973.1,blat.proc3829893.chain_3369	2
scaffold_8	alternate_exon	21890	22550	-	asmbl_52673	none	STRG.9695.1,blat.proc3829891.chain_1953	2	STRG.9695.2	1
scaffold_28	ends_in_intron	8684467	8684467	-	asmbl_37808	none	Trinity_GG_33775_c0_g1_i1,blat.proc3829901.chain_3011	2	STRG.29917.1,Trinity_GG_33775_c0_g1_i2,blat.proc3829901.chain_3010	3
scaffold_9	starts_in_intron	13851944	13851944	-	asmbl_55414	none	blat.proc3829893.chain_34	1	STRG.11644.3,blat.proc3829893.chain_31,blat.proc3829893.chain_32,blat.proc3829893.chain_33,blat.proc3829893.chain_35,blat.proc3829893.chain_36	6
scaffold_10	retained_intron	5006780	5006917	-	asmbl_3245	none	Trinity_GG_23874_c0_g1_i2,blat.proc3829893.chain_755	2	STRG.12316.1,STRG.12316.2,Trinity_GG_23874_c0_g1_i4,blat.proc3829893.chain_753,blat.proc3829893.chain_754,blat.proc3829893.chain_756	6
scaffold_22	alt_donor	4342453	4342454	+	asmbl_29272	none	STRG.24834.2,Trinity_GG_13728_c2_g1_i1,blat.proc3829883.chain_1866	3	STRG.24834.1,Trinity_GG_13728_c2_g1_i2,blat.proc3829883.chain_1867	3
scaffold_2	alt_acceptor	11814007	11814008	+	asmbl_24810	none	STRG.2282.2,Trinity_GG_1255_c0_g1_i1,blat.proc3829871.chain_2337	3	STRG.2282.1,Trinity_GG_1255_c0_g1_i3,blat.proc3829871.chain_2336	3
scaffold_3	alt_donor	10983714	10983715	-	asmbl_39086	none	STRG.3533.2	1	STRG.3533.1	1
scaffold_5	spliced_intron	1136209	1136301	-	asmbl_45218	none	STRG.5655.2	1	STRG.5655.1	1
scaffold_11	starts_in_intron	17332673	17332673	+	asmbl_6192	none	blat.proc3829877.chain_2883	1	STRG.14383.1	1
scaffold_11	starts_in_intron	10820150	10820150	+	asmbl_5915	none	Trinity_GG_7744_c0_g1_i3,blat.proc3829877.chain_2537	2	STRG.14041.1,blat.proc3829877.chain_2538,blat.proc3829877.chain_2539	3
scaffold_6	starts_in_intron	5051172	5051172	-	asmbl_48333	none	blat.proc3829889.chain_3507	1	STRG.7479.1	1
scaffold_18	alt_acceptor	8155778	8155779	-	asmbl_20033	none	STRG.21495.2,blat.proc3829897.chain_2339	2	STRG.21495.1,blat.proc3829897.chain_2340	2
scaffold_16	alt_donor	6186126	6186127	+	asmbl_17080	none	STRG.19341.1,Trinity_GG_10583_c0_g1_i1,blat.proc3829881.chain_195	3	STRG.19341.2	1
scaffold_17	starts_in_intron	1290010	1290010	-	asmbl_18728	none	Trinity_GG_28167_c0_g1_i4,blat.proc3829897.chain_842	2	STRG.19952.1,STRG.19952.3,STRG.19952.4,STRG.19952.5,blat.proc3829897.chain_836,blat.proc3829897.chain_838,blat.proc3829897.chain_840,blat.proc3829897.chain_841,blat.proc3829897.chain_843	9
scaffold_10	alternate_exon	10602836	10602857	+	asmbl_4706	none	STRG.12741.1	1	blat.proc3829877.chain_1277	1
scaffold_12	retained_intron	7172893	7173215	+	asmbl_8687	none	blat.proc3829877.chain_3243	1	STRG.14775.2,blat.proc3829877.chain_3240,blat.proc3829877.chain_3241,blat.proc3829877.chain_3242	4
scaffold_10	alt_acceptor	4035041	4035042	+	asmbl_4379	none	STRG.12235.1,blat.proc3829877.chain_917	2	STRG.12235.2	1
scaffold_18	retained_intron	7629659	7631669	-	asmbl_19996,asmbl_19999	none	STRG.21453.1,STRG.21453.5,blat.proc3829897.chain_2308,blat.proc3829897.chain_2309	4	Trinity_GG_29021_c0_g1_i8,blat.proc3829897.chain_2311	2
scaffold_2	alternate_exon	19087031	19087108	+	asmbl_25294	none	STRG.2773.2,Trinity_GG_1555_c0_g1_i1,blat.proc3829871.chain_2932	3	STRG.2773.1	1
scaffold_7	starts_in_intron	2317303	2317303	+	asmbl_50514	none	STRG.8663.1,Trinity_GG_4763_c1_g1_i1,blat.proc3829875.chain_1094	3	Trinity_GG_4763_c0_g1_i2	1
scaffold_10	alternate_exon	8317759	8318006	-	asmbl_3490	none	STRG.12583.2	1	STRG.12583.1	1
scaffold_3	starts_in_intron	10305325	10305325	+	asmbl_40221	none	blat.proc3829871.chain_3655	1	STRG.3466.1,STRG.3466.3,Trinity_GG_1968_c0_g2_i1,blat.proc3829871.chain_3656	4
scaffold_19	spliced_intron	2348182	2348361	+	asmbl_22061	none	STRG.21936.2,blat.proc3829881.chain_2892	2	STRG.21936.1,blat.proc3829881.chain_2891	2
scaffold_13	retained_intron	2568046	2569763	+	asmbl_10611,asmbl_10612,asmbl_10613,asmbl_10614	none	blat.proc3829879.chain_188,blat.proc3829879.chain_191,blat.proc3829879.chain_193,blat.proc3829879.chain_195	4	STRG.15550.1,Trinity_GG_8519_c0_g1_i1,Trinity_GG_8519_c0_g1_i3,blat.proc3829879.chain_189,blat.proc3829879.chain_192	5
scaffold_4	starts_in_intron	6350747	6350747	+	asmbl_42737	none	Trinity_GG_2488_c0_g1_i1,blat.proc3829873.chain_847	2	STRG.4504.1,Trinity_GG_2488_c0_g1_i3,blat.proc3829873.chain_846	3
scaffold_17	alt_acceptor	9567810	9567811	+	asmbl_18242	none	Trinity_GG_11277_c0_g1_i2,blat.proc3829881.chain_1400	2	STRG.20564.1,Trinity_GG_11277_c0_g1_i1,Trinity_GG_11277_c0_g1_i3,blat.proc3829881.chain_1399,blat.proc3829881.chain_1401	5
scaffold_5	retained_intron	5061929	5062040	+	asmbl_44005,asmbl_44007	none	Trinity_GG_3232_c0_g1_i2,Trinity_GG_3232_c0_g1_i3,blat.proc3829873.chain_2050,blat.proc3829873.chain_2051	4	STRG.5955.1,blat.proc3829873.chain_2052	2
scaffold_5	retained_exon	238630	239201	-	asmbl_45152	none	STRG.5594.3	1	STRG.5594.2	1
scaffold_4	retained_intron	4112991	4113116	-	asmbl_41225	none	blat.proc3829889.chain_375	1	STRG.4314.1,blat.proc3829889.chain_373,blat.proc3829889.chain_376	3
scaffold_1517	alt_donor	1446	1447	-	asmbl_15969	none	STRG.30587.2	1	STRG.30587.1	1
scaffold_1	skipped_exon	6830779	6831856	-	asmbl_396	none	STRG.478.3	1	STRG.478.1,STRG.478.2,blat.proc3829887.chain_368,blat.proc3829887.chain_369	4
scaffold_13	spliced_intron	4459134	4459215	+	asmbl_10773,asmbl_10774,asmbl_10775,asmbl_10778	none	STRG.15755.1,STRG.15755.2,Trinity_GG_8663_c0_g1_i6,blat.proc3829879.chain_448,blat.proc3829879.chain_450,blat.proc3829879.chain_451,blat.proc3829879.chain_452	7	STRG.15755.3,STRG.15755.4,Trinity_GG_8663_c0_g1_i7,blat.proc3829879.chain_449,blat.proc3829879.chain_453	5
scaffold_4	alt_donor	16689677	16689678	+	asmbl_43337	none	STRG.5246.1	1	STRG.5246.2,Trinity_GG_2914_c0_g1_i1,blat.proc3829873.chain_1536	3
scaffold_3	starts_in_intron	19811537	19811537	+	asmbl_40735,asmbl_40736	none	blat.proc3829873.chain_433,blat.proc3829873.chain_437	2	STRG.4094.1,STRG.4094.2,STRG.4094.3,blat.proc3829873.chain_434,blat.proc3829873.chain_435,blat.proc3829873.chain_436,blat.proc3829873.chain_438	7
scaffold_6	retained_intron	12990908	12991437	-	asmbl_48792,asmbl_48793,asmbl_48795	none	STRG.8061.2,STRG.8061.3,blat.proc3829891.chain_262,blat.proc3829891.chain_263,blat.proc3829891.chain_264,blat.proc3829891.chain_271,blat.proc3829891.chain_275	7	STRG.8061.1,STRG.8061.4,blat.proc3829891.chain_260,blat.proc3829891.chain_272	4
scaffold_18	alt_donor	7948287	7948288	-	asmbl_20027	none	STRG.21484.1,blat.proc3829897.chain_2317	2	STRG.21484.2,STRG.21484.4,blat.proc3829897.chain_2318	3
scaffold_10	retained_exon	17395184	17395229	+	asmbl_5048,asmbl_5049	none	STRG.13179.1,STRG.13179.2	2	STRG.13179.3	1
scaffold_3	alt_donor	18118900	18118901	+	asmbl_40686	none	STRG.4022.1	1	STRG.4022.2	1
scaffold_10	alt_acceptor	759695	759696	-	asmbl_2919	none	STRG.11950.1,blat.proc3829893.chain_422	2	STRG.11950.2	1
scaffold_23	skipped_exon	7915714	7917467	-	asmbl_31775	none	STRG.26078.4,blat.proc3829899.chain_3208	2	STRG.26078.2,blat.proc3829899.chain_3204	2
scaffold_4	alt_donor	4425808	4425809	-	asmbl_41249,asmbl_41250,asmbl_41252	none	STRG.4342.1,STRG.4342.2,blat.proc3829889.chain_471,blat.proc3829889.chain_473	4	STRG.4342.3	1
scaffold_4	ends_in_intron	8087436	8087436	-	asmbl_41480	none	Trinity_GG_19600_c1_g1_i1,blat.proc3829889.chain_723	2	STRG.4623.1,blat.proc3829889.chain_722	2
scaffold_19	ends_in_intron	13141055	13141055	+	asmbl_22660	none	STRG.22620.1	1	STRG.22620.2,blat.proc3829881.chain_3586	2
scaffold_11	starts_in_intron	13256889	13256889	+	asmbl_6019	none	Trinity_GG_7818_c0_g1_i4,blat.proc3829877.chain_2652	2	STRG.14184.1,STRG.14184.2,STRG.14184.3,blat.proc3829877.chain_2651,blat.proc3829877.chain_2653,blat.proc3829877.chain_2654	6
scaffold_12	alt_donor	14991069	14991070	-	asmbl_8157	none	STRG.15282.1,Trinity_GG_25571_c0_g1_i1,blat.proc3829893.chain_3742	3	STRG.15282.3,STRG.15282.4,Trinity_GG_25571_c0_g1_i2,Trinity_GG_25571_c0_g1_i3,blat.proc3829893.chain_3740,blat.proc3829893.chain_3743	6
scaffold_20	retained_intron	9104952	9105052	+	asmbl_25986	none	blat.proc3829883.chain_541	1	STRG.23442.1,STRG.23442.2,Trinity_GG_12953_c0_g1_i1,Trinity_GG_12953_c0_g1_i2,blat.proc3829883.chain_540,blat.proc3829883.chain_543	6
scaffold_9	retained_intron	17456173	17456492	-	asmbl_55605	none	STRG.11831.1,Trinity_GG_23567_c0_g1_i4,blat.proc3829893.chain_235,blat.proc3829893.chain_237	4	STRG.11831.2,blat.proc3829893.chain_236	2
scaffold_10	starts_in_intron	3759631	3759631	-	asmbl_3133,asmbl_3134	none	STRG.12200.1,STRG.12200.4	2	STRG.12200.3	1
scaffold_18	alternate_exon	9167323	9168048	+	asmbl_20904,asmbl_20906	none	STRG.21549.2,STRG.21549.3,Trinity_GG_11916_c0_g1_i2,blat.proc3829881.chain_2540	4	Trinity_GG_11916_c0_g1_i1,blat.proc3829881.chain_2538	2
scaffold_21	ends_in_intron	5455628	5455628	+	asmbl_28590	none	blat.proc3829883.chain_1252	1	STRG.24067.1,Trinity_GG_13358_c1_g2_i1,blat.proc3829883.chain_1255	3
scaffold_28	ends_in_intron	2341516	2341516	-	asmbl_37370	none	blat.proc3829901.chain_2457	1	Trinity_GG_33454_c0_g1_i3,blat.proc3829901.chain_2458,blat.proc3829901.chain_2460	3
scaffold_26	alt_donor	8177462	8177463	+	asmbl_35685	none	STRG.28405.1,blat.proc3829885.chain_1406	2	STRG.28405.2,blat.proc3829885.chain_1407	2
scaffold_2	retained_intron	15272586	15272673	+	asmbl_25038,asmbl_25042,asmbl_25044,asmbl_25045	none	blat.proc3829871.chain_2525,blat.proc3829871.chain_2527,blat.proc3829871.chain_2531,blat.proc3829871.chain_2537	4	STRG.2481.1,blat.proc3829871.chain_2524,blat.proc3829871.chain_2526,blat.proc3829871.chain_2528,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2535,blat.proc3829871.chain_2536,blat.proc3829871.chain_2538	9
scaffold_8	ends_in_intron	17683851	17683851	-	asmbl_53493	none	STRG.10682.3,Trinity_GG_22921_c0_g1_i4,blat.proc3829891.chain_2788	3	STRG.10682.1,Trinity_GG_22921_c0_g1_i6,blat.proc3829891.chain_2786	3
scaffold_28	skipped_exon	1008096	1008835	-	asmbl_37280,asmbl_37281	none	STRG.29292.1,blat.proc3829901.chain_2363	2	STRG.29292.2,blat.proc3829901.chain_2364	2
scaffold_14	starts_in_intron	10001105	10001105	-	asmbl_13384	none	blat.proc3829895.chain_2062	1	STRG.17356.1,blat.proc3829895.chain_2060,blat.proc3829895.chain_2061	3
scaffold_4	alt_acceptor	4550359	4550360	+	asmbl_42619,asmbl_42621,asmbl_42622	none	STRG.4367.1,STRG.4367.2,STRG.4367.3,blat.proc3829873.chain_737	4	blat.proc3829873.chain_738	1
scaffold_3	ends_in_intron	14776874	14776874	-	asmbl_39373,asmbl_39375	none	STRG.3820.4,blat.proc3829887.chain_3628,blat.proc3829887.chain_3629	3	STRG.3820.1,STRG.3820.2,STRG.3820.3,blat.proc3829887.chain_3630	4
scaffold_27	alternate_exon	2870589	2874138	+	asmbl_36094	none	STRG.28749.1,Trinity_GG_15907_c0_g1_i1,blat.proc3829885.chain_1797,blat.proc3829885.chain_1830	4	STRG.28749.3,blat.proc3829885.chain_1831	2
scaffold_23	retained_exon	4226413	4226552	-	asmbl_31568,asmbl_31569,asmbl_31571,asmbl_31573,asmbl_31574,asmbl_31575	none	STRG.25818.1,STRG.25818.2,STRG.25818.3,blat.proc3829899.chain_2943,blat.proc3829899.chain_2944,blat.proc3829899.chain_2945,blat.proc3829899.chain_2946,blat.proc3829899.chain_2949	8	STRG.25818.5	1
scaffold_24	spliced_intron	10597325	10597404	-	asmbl_33203	none	STRG.26998.1,blat.proc3829901.chain_314	2	blat.proc3829901.chain_312	1
scaffold_13	alt_donor	15679019	15679020	+	asmbl_11509	none	STRG.16595.2	1	STRG.16595.1	1
scaffold_16	spliced_intron	8549399	8549668	+	asmbl_17199	none	STRG.19467.1,blat.proc3829881.chain_337	2	Trinity_GG_10666_c0_g1_i2,blat.proc3829881.chain_338	2
scaffold_12	retained_exon	2928444	2928560	-	asmbl_7467	none	STRG.14515.5	1	STRG.14515.1	1
scaffold_24	starts_in_intron	8127975	8127975	+	asmbl_32421	none	Trinity_GG_14836_c0_g1_i2,blat.proc3829883.chain_3724	2	blat.proc3829883.chain_3725	1
scaffold_1	alternate_exon	8753713	8754389	-	asmbl_495	none	STRG.583.1,blat.proc3829887.chain_508	2	STRG.583.3,blat.proc3829887.chain_506	2
scaffold_28	retained_intron	7721599	7722019	+	asmbl_38403	none	Trinity_GG_16523_c1_g2_i1	1	STRG.29824.1,Trinity_GG_16523_c1_g1_i1,Trinity_GG_16523_c1_g1_i2,blat.proc3829885.chain_2922,blat.proc3829885.chain_2923,blat.proc3829885.chain_2926,blat.proc3829885.chain_2928	7
scaffold_15	starts_in_intron	14330897	14330897	-	asmbl_15729	none	STRG.18855.3,blat.proc3829895.chain_3611	2	blat.proc3829895.chain_3603	1
scaffold_21	starts_in_intron	1861768	1861768	-	asmbl_27451	none	blat.proc3829899.chain_878	1	STRG.23813.1,blat.proc3829899.chain_879	2
scaffold_25	ends_in_intron	4440836	4440836	+	asmbl_33495	none	blat.proc3829885.chain_407	1	STRG.27356.1,STRG.27356.2,STRG.27356.3,STRG.27356.4,Trinity_GG_15095_c0_g1_i1,Trinity_GG_15095_c0_g1_i2,Trinity_GG_15095_c0_g1_i3,blat.proc3829885.chain_403,blat.proc3829885.chain_404,blat.proc3829885.chain_405	10
scaffold_13	ends_in_intron	13976914	13976914	-	asmbl_10131	none	blat.proc3829895.chain_1158	1	STRG.16436.1,blat.proc3829895.chain_1157	2
scaffold_7	alternate_exon	4501602	4501706	-	asmbl_49677,asmbl_49681	none	STRG.8813.2,blat.proc3829891.chain_1190,blat.proc3829891.chain_1192	3	blat.proc3829891.chain_1191	1
scaffold_2	spliced_intron	6301801	6302073	-	asmbl_23217	none	STRG.1994.1,Trinity_GG_18070_c0_g1_i2,blat.proc3829887.chain_1749	3	Trinity_GG_18070_c0_g1_i1,Trinity_GG_18070_c0_g1_i3,blat.proc3829887.chain_1748,blat.proc3829887.chain_1750	4
scaffold_24	starts_in_intron	8748134	8748134	+	asmbl_32448	none	Trinity_GG_14810_c0_g1_i1,blat.proc3829883.chain_3682	2	STRG.26872.1,STRG.26872.2,STRG.26872.3,Trinity_GG_14810_c0_g1_i2,blat.proc3829883.chain_3681	5
scaffold_2	alt_donor	2010736	2010737	+	asmbl_24251	none	STRG.1654.1	1	STRG.1654.2	1
scaffold_26	alt_donor	9918618	9918619	-	asmbl_35070,asmbl_35072,asmbl_35073	none	STRG.28506.1,STRG.28506.2,Trinity_GG_32924_c0_g1_i4,blat.proc3829901.chain_1611,blat.proc3829901.chain_1613	5	STRG.28506.3	1
scaffold_4	spliced_intron	4094067	4094177	+	asmbl_42543,asmbl_42544,asmbl_42545,asmbl_42546,asmbl_42554,asmbl_42555	none	STRG.4313.1,STRG.4313.2,STRG.4313.3,STRG.4313.4,STRG.4313.5,blat.proc3829873.chain_635,blat.proc3829873.chain_636,blat.proc3829873.chain_638	8	Trinity_GG_2386_c0_g1_i14,blat.proc3829873.chain_633,blat.proc3829873.chain_640	3
scaffold_26	alternate_exon	9100082	9101417	+	asmbl_35729	none	STRG.28457.1,Trinity_GG_15720_c0_g1_i1,blat.proc3829885.chain_1443	3	STRG.28457.2,blat.proc3829885.chain_1444	2
scaffold_15	alternate_exon	15443363	15443729	+	asmbl_14744	none	STRG.18933.1,blat.proc3829879.chain_3564	2	Trinity_GG_10389_c0_g1_i2,Trinity_GG_10389_c0_g1_i7,blat.proc3829879.chain_3560,blat.proc3829879.chain_3565	4
scaffold_2	ends_in_intron	888719	888719	+	asmbl_24151	none	blat.proc3829871.chain_1549	1	STRG.1564.1,STRG.1564.2,STRG.1564.4,STRG.1564.5,blat.proc3829871.chain_1546,blat.proc3829871.chain_1547,blat.proc3829871.chain_1550	7
scaffold_2	retained_intron	13064806	13065021	+	asmbl_24844,asmbl_24846	none	STRG.2330.1,blat.proc3829871.chain_2456,blat.proc3829871.chain_2458,blat.proc3829871.chain_2461	4	STRG.2330.2,blat.proc3829871.chain_2457	2
scaffold_5	alt_donor	939501	939502	-	asmbl_45188	none	STRG.5635.3	1	STRG.5635.2	1
scaffold_2	starts_in_intron	7406610	7406610	-	asmbl_23278	none	STRG.2065.2,Trinity_GG_18123_c0_g1_i4,blat.proc3829887.chain_1878	3	STRG.2065.1,Trinity_GG_18123_c0_g1_i2,blat.proc3829887.chain_1879	3
scaffold_12	retained_exon	10606019	10606058	+	asmbl_8913	none	STRG.15020.2,blat.proc3829877.chain_3509	2	STRG.15020.1,STRG.15020.3,STRG.15020.4,blat.proc3829877.chain_3504,blat.proc3829877.chain_3505,blat.proc3829877.chain_3508	6
scaffold_11	alt_donor	11938200	11938201	-	asmbl_7020	none	STRG.14160.1	1	STRG.14160.2,STRG.14160.3,STRG.14160.4,STRG.14160.5	4
scaffold_3	retained_intron	5260258	5260560	-	asmbl_38796	none	Trinity_GG_18760_c0_g1_i1,blat.proc3829887.chain_2956	2	STRG.3218.1,Trinity_GG_18760_c0_g1_i3,Trinity_GG_18760_c0_g1_i5,blat.proc3829887.chain_2955,blat.proc3829887.chain_2958,blat.proc3829887.chain_2959	6
scaffold_19	retained_intron	12487325	12488732	-	asmbl_21711	none	Trinity_GG_29570_c0_g1_i1,Trinity_GG_29570_c0_g3_i1,blat.proc3829897.chain_3285,blat.proc3829897.chain_3289	4	blat.proc3829897.chain_3288	1
scaffold_24	starts_in_intron	6897081	6897081	+	asmbl_32364	none	blat.proc3829883.chain_3637	1	STRG.26730.1,blat.proc3829883.chain_3636	2
scaffold_1	alternate_exon	3680407	3682130	+	asmbl_1626	none	STRG.237.3	1	blat.proc3829871.chain_294	1
scaffold_12	starts_in_intron	4418976	4418976	+	asmbl_8573	none	blat.proc3829877.chain_3057	1	STRG.14611.1,Trinity_GG_8046_c0_g1_i2,blat.proc3829877.chain_3059	3
scaffold_3	alt_acceptor	12063112	12063113	+	asmbl_40346,asmbl_40348	none	STRG.3627.1,STRG.3627.3,Trinity_GG_2023_c0_g1_i1,blat.proc3829873.chain_3	4	STRG.3627.2	1
scaffold_17	alt_acceptor	9531392	9531393	+	asmbl_18229,asmbl_18232,asmbl_18233,asmbl_18235,asmbl_18236	none	STRG.20566.2,Trinity_GG_11250_c0_g1_i3,Trinity_GG_11250_c0_g1_i4,Trinity_GG_11250_c0_g1_i7,blat.proc3829881.chain_1349,blat.proc3829881.chain_1350,blat.proc3829881.chain_1351,blat.proc3829881.chain_1352,blat.proc3829881.chain_1353	9	blat.proc3829881.chain_1354	1
scaffold_27	retained_intron	512494	512580	-	asmbl_36647,asmbl_36649	none	STRG.28552.1,blat.proc3829901.chain_1737	2	STRG.28552.2,STRG.28552.3	2
scaffold_8	retained_intron	9904299	9904378	-	asmbl_53061	none	Trinity_GG_22721_c0_g1_i2,blat.proc3829891.chain_2393	2	STRG.10235.1,blat.proc3829891.chain_2394,blat.proc3829891.chain_2395	3
scaffold_3	alternate_exon	15800427	15800454	+	asmbl_40542	none	STRG.3855.2	1	STRG.3855.1,Trinity_GG_2164_c0_g1_i1,blat.proc3829873.chain_259	3
scaffold_11	alternate_exon	17070301	17070425	-	asmbl_7220	none	STRG.14359.2,blat.proc3829893.chain_2779	2	STRG.14359.1,STRG.14359.3,blat.proc3829893.chain_2780	3
scaffold_10	alternate_exon	3793933	3794011	-	asmbl_3146	none	blat.proc3829893.chain_667	1	STRG.12214.1,STRG.12214.3,blat.proc3829893.chain_665	3
scaffold_18	starts_in_intron	3791553	3791553	-	asmbl_19815	none	blat.proc3829897.chain_2085	1	STRG.21185.1,STRG.21185.2,STRG.21185.3,blat.proc3829897.chain_2077,blat.proc3829897.chain_2078,blat.proc3829897.chain_2079,blat.proc3829897.chain_2080,blat.proc3829897.chain_2083,blat.proc3829897.chain_2084	9
scaffold_28	ends_in_intron	4699868	4699868	+	asmbl_38237	none	Trinity_GG_16429_c1_g2_i1,blat.proc3829885.chain_2744	2	STRG.29616.1,STRG.29616.2,blat.proc3829885.chain_2743	3
scaffold_21	retained_exon	608994	609074	+	asmbl_28302	none	STRG.23736.2,blat.proc3829883.chain_909	2	STRG.23736.1,blat.proc3829883.chain_908	2
scaffold_2	spliced_intron	5183182	5183932	-	asmbl_23159	none	STRG.1936.2,blat.proc3829887.chain_1860	2	STRG.1936.1,blat.proc3829887.chain_1855	2
scaffold_6	alt_donor	12554877	12554878	-	asmbl_48759,asmbl_48764	none	STRG.8010.2,blat.proc3829891.chain_321	2	STRG.8010.1,blat.proc3829891.chain_318	2
scaffold_4	skipped_exon	10855073	10857971	+	asmbl_43009	none	STRG.4806.1	1	STRG.4806.2,blat.proc3829873.chain_1151	2
scaffold_12	starts_in_intron	14033318	14033318	-	asmbl_8087	none	Trinity_GG_25528_c0_g1_i2,blat.proc3829893.chain_3642	2	STRG.15210.1,Trinity_GG_25528_c0_g1_i1,blat.proc3829893.chain_3641	3
scaffold_12	alt_donor	5637492	5637493	-	asmbl_7645	none	STRG.14701.1,blat.proc3829893.chain_3066	2	STRG.14701.2,blat.proc3829893.chain_3064	2
scaffold_25	ends_in_intron	6522423	6522423	+	asmbl_33635	none	STRG.27513.2,blat.proc3829885.chain_460	2	STRG.27513.1,Trinity_GG_15120_c1_g1_i1,blat.proc3829885.chain_461	3
scaffold_4	alt_donor	996966	996967	-	asmbl_41100	none	STRG.4159.1,Trinity_GG_19334_c0_g1_i2,blat.proc3829889.chain_270	3	STRG.4159.2,Trinity_GG_19334_c0_g1_i1,blat.proc3829889.chain_271	3
scaffold_22	alt_donor	10040347	10040348	-	asmbl_30345	none	STRG.25336.1,blat.proc3829899.chain_2409	2	blat.proc3829899.chain_2408	1
scaffold_14	retained_exon	7028469	7028528	+	asmbl_12103	none	STRG.17126.1,Trinity_GG_9449_c0_g1_i5,blat.proc3829879.chain_1904,blat.proc3829879.chain_1905	4	blat.proc3829879.chain_1903	1
scaffold_6	retained_exon	2880868	2881101	-	asmbl_48126	none	STRG.7279.2,blat.proc3829889.chain_3249	2	blat.proc3829889.chain_3250	1
scaffold_5	ends_in_intron	18254711	18254711	+	asmbl_44887	none	Trinity_GG_3839_c0_g1_i3,blat.proc3829873.chain_3130	2	STRG.6952.1,Trinity_GG_3839_c0_g1_i2,blat.proc3829873.chain_3127	3
scaffold_20	alt_donor	10132449	10132450	+	asmbl_26091	none	STRG.23543.2	1	blat.proc3829883.chain_650	1
scaffold_1	retained_intron	10949081	10950931	+	asmbl_2028,asmbl_2029	none	STRG.713.2,blat.proc3829871.chain_748,blat.proc3829871.chain_753	3	STRG.713.1,blat.proc3829871.chain_751	2
scaffold_5	spliced_intron	5045141	5046460	+	asmbl_43991	none	STRG.5951.1,blat.proc3829873.chain_2107	2	Trinity_GG_3261_c0_g2_i1,blat.proc3829873.chain_2109,blat.proc3829873.chain_2111	3
scaffold_322	alt_acceptor	5814	5815	-	asmbl_40912	none	STRG.30255.1	1	STRG.30255.2	1
scaffold_24	ends_in_intron	5950307	5950307	+	asmbl_32271,asmbl_32274,asmbl_32275,asmbl_32276,asmbl_32278,asmbl_32281	none	blat.proc3829883.chain_3539,blat.proc3829883.chain_3542,blat.proc3829883.chain_3544,blat.proc3829883.chain_3546,blat.proc3829883.chain_3547,blat.proc3829883.chain_3549	6	STRG.26645.1,blat.proc3829883.chain_3537,blat.proc3829883.chain_3541,blat.proc3829883.chain_3543,blat.proc3829883.chain_3545	5
scaffold_11	ends_in_intron	7084511	7084511	+	asmbl_5621	none	blat.proc3829877.chain_2199	1	STRG.13726.1,blat.proc3829877.chain_2200	2
scaffold_7	skipped_exon	3390194	3390921	-	asmbl_49603	none	STRG.8733.2	1	STRG.8733.1	1
scaffold_28	starts_in_intron	3245316	3245316	+	asmbl_38156	none	Trinity_GG_16345_c0_g2_i1,blat.proc3829885.chain_2587	2	STRG.29522.1,STRG.29522.2	2
scaffold_15	starts_in_intron	15403617	15403617	-	asmbl_15791	none	blat.proc3829895.chain_3688	1	STRG.18919.1,Trinity_GG_27636_c0_g1_i1,blat.proc3829895.chain_3687	3
scaffold_19	alt_acceptor	13007897	13007898	+	asmbl_22643,asmbl_22645,asmbl_22649	none	STRG.22609.2,Trinity_GG_12510_c0_g1_i1,Trinity_GG_12510_c0_g1_i10,Trinity_GG_12510_c0_g1_i11,blat.proc3829881.chain_3578,blat.proc3829881.chain_3583,blat.proc3829881.chain_3585	7	STRG.22609.1,Trinity_GG_12510_c0_g1_i4,Trinity_GG_12510_c0_g1_i5,Trinity_GG_12510_c0_g1_i6,Trinity_GG_12510_c0_g1_i8,blat.proc3829881.chain_3576,blat.proc3829881.chain_3577,blat.proc3829881.chain_3579,blat.proc3829881.chain_3584	9
scaffold_21	starts_in_intron	4104984	4104984	-	asmbl_27590	none	blat.proc3829899.chain_1012	1	blat.proc3829899.chain_1013	1
scaffold_26	skipped_exon	1994012	1995174	+	asmbl_35258	none	blat.proc3829885.chain_907	1	STRG.27926.1,STRG.27926.2	2
scaffold_12	skipped_exon	14989527	14991070	-	asmbl_8157	none	STRG.15282.1,Trinity_GG_25571_c0_g1_i1,blat.proc3829893.chain_3742	3	STRG.15282.2,Trinity_GG_25571_c0_g1_i4,blat.proc3829893.chain_3744	3
scaffold_18	retained_intron	11329326	11329551	+	asmbl_20964	none	Trinity_GG_11992_c0_g1_i11,blat.proc3829881.chain_2656	2	STRG.21666.1,STRG.21666.2,blat.proc3829881.chain_2648,blat.proc3829881.chain_2651,blat.proc3829881.chain_2655	5
scaffold_26	ends_in_intron	7488054	7488054	+	asmbl_35642,asmbl_35644,asmbl_35645	none	STRG.28365.1,STRG.28365.3,blat.proc3829885.chain_1379,blat.proc3829885.chain_1380	4	STRG.28365.2,blat.proc3829885.chain_1381,blat.proc3829885.chain_1383	3
scaffold_5	retained_exon	993797	993872	+	asmbl_43771,asmbl_43772	none	STRG.5645.2,blat.proc3829873.chain_1820,blat.proc3829873.chain_1821	3	STRG.5645.1	1
scaffold_5	alt_acceptor	9163672	9163673	+	asmbl_44282	none	STRG.6246.2	1	STRG.6246.1,blat.proc3829873.chain_2404	2
scaffold_5	alt_acceptor	9085434	9085435	+	asmbl_44259,asmbl_44265,asmbl_44270	none	STRG.6237.1,STRG.6237.3,blat.proc3829873.chain_2419,blat.proc3829873.chain_2423	4	STRG.6237.4,STRG.6237.5,blat.proc3829873.chain_2426	3
scaffold_4	ends_in_intron	14650104	14650104	-	asmbl_41812	none	Trinity_GG_19831_c0_g1_i1,blat.proc3829889.chain_1120	2	STRG.5094.1,STRG.5094.2,STRG.5094.3,blat.proc3829889.chain_1119,blat.proc3829889.chain_1121,blat.proc3829889.chain_1122	6
scaffold_11	spliced_intron	10398841	10399063	+	asmbl_5905,asmbl_5906	none	STRG.14037.1,blat.proc3829877.chain_2425,blat.proc3829877.chain_2426	3	blat.proc3829877.chain_2428	1
scaffold_2	starts_in_intron	13448365	13448365	-	asmbl_23532,asmbl_23534	none	blat.proc3829887.chain_2213,blat.proc3829887.chain_2216	2	STRG.2365.1,blat.proc3829887.chain_2214,blat.proc3829887.chain_2217	3
scaffold_17	starts_in_intron	9533226	9533226	+	asmbl_18231	none	STRG.20566.4,blat.proc3829881.chain_1356	2	STRG.20566.1,STRG.20566.2,STRG.20566.3,Trinity_GG_11250_c0_g1_i3,Trinity_GG_11250_c0_g1_i4,Trinity_GG_11250_c0_g1_i7,blat.proc3829881.chain_1349,blat.proc3829881.chain_1350,blat.proc3829881.chain_1351,blat.proc3829881.chain_1352,blat.proc3829881.chain_1353	11
scaffold_26	alternate_exon	2250711	2250744	+	asmbl_35269	none	STRG.27939.2	1	STRG.27939.1,blat.proc3829885.chain_934,blat.proc3829885.chain_935	3
scaffold_1	retained_intron	1533624	1533762	+	asmbl_1483	none	Trinity_GG_67_c0_g1_i1,blat.proc3829871.chain_117	2	STRG.94.1,Trinity_GG_67_c0_g1_i2,blat.proc3829871.chain_118	3
scaffold_5	starts_in_intron	11960473	11960473	+	asmbl_44448	none	Trinity_GG_3512_c0_g1_i1,blat.proc3829873.chain_2593	2	STRG.6436.1	1
scaffold_8	skipped_exon	11829975	11830992	+	asmbl_52262	none	STRG.10379.1	1	STRG.10379.2,blat.proc3829875.chain_2918	2
scaffold_14	alternate_exon	9313592	9313612	-	asmbl_13361	none	STRG.17316.1	1	STRG.17316.2,Trinity_GG_26727_c0_g1_i1,blat.proc3829895.chain_2036	3
scaffold_14	alternate_exon	14140582	14149024	+	asmbl_12511,asmbl_12512,asmbl_12515	none	STRG.17676.1,STRG.17676.3,STRG.17676.5	3	Trinity_GG_9669_c0_g1_i3,blat.proc3829879.chain_2282	2
scaffold_14	alt_acceptor	7497475	7497476	+	asmbl_12144,asmbl_12145,asmbl_12146	none	STRG.17177.1,STRG.17177.2,STRG.17177.4,blat.proc3829879.chain_1834	4	STRG.17177.3	1
scaffold_21	alt_acceptor	10098213	10098214	+	asmbl_28866	none	STRG.24457.2	1	STRG.24457.1	1
scaffold_20	alt_donor	9656237	9656238	+	asmbl_26036	none	STRG.23495.2	1	STRG.23495.1	1
scaffold_14	alt_donor	10682298	10682299	-	asmbl_13419	none	STRG.17409.3	1	STRG.17409.1,STRG.17409.2,blat.proc3829895.chain_2119,blat.proc3829895.chain_2120	4
scaffold_19	ends_in_intron	12356464	12356464	+	asmbl_22598	none	STRG.22554.1	1	STRG.22554.2	1
scaffold_26	starts_in_intron	10119603	10119603	-	asmbl_35089	none	Trinity_GG_32936_c0_g1_i10,blat.proc3829901.chain_1630	2	STRG.28511.1,STRG.28511.2,STRG.28511.3,Trinity_GG_32936_c0_g1_i11,Trinity_GG_32936_c0_g1_i13,Trinity_GG_32936_c0_g1_i3,Trinity_GG_32936_c0_g1_i5,Trinity_GG_32936_c0_g1_i8,blat.proc3829901.chain_1632,blat.proc3829901.chain_1633,blat.proc3829901.chain_1634,blat.proc3829901.chain_1635,blat.proc3829901.chain_1636	13
scaffold_20	spliced_intron	8292472	8293196	+	asmbl_25915,asmbl_25916,asmbl_25917,asmbl_25919	none	STRG.23362.2,STRG.23362.3,Trinity_GG_12893_c0_g1_i2,Trinity_GG_12893_c0_g1_i3,blat.proc3829883.chain_458,blat.proc3829883.chain_459,blat.proc3829883.chain_461	7	STRG.23362.1,STRG.23362.4,Trinity_GG_12893_c0_g1_i4,blat.proc3829883.chain_460	4
scaffold_20	alt_acceptor	7144568	7144569	-	asmbl_26799	none	blat.proc3829883.chain_388	1	STRG.23267.1	1
scaffold_5	skipped_exon	6564452	6567257	+	asmbl_44094	none	STRG.6047.1,blat.proc3829873.chain_2179,blat.proc3829873.chain_2181	3	STRG.6047.2	1
scaffold_22	ends_in_intron	294910	294910	+	asmbl_29127	none	blat.proc3829883.chain_1707	1	blat.proc3829883.chain_1706	1
scaffold_2	alt_acceptor	6752520	6752521	-	asmbl_23254	none	STRG.2029.1,Trinity_GG_18143_c0_g1_i1,blat.proc3829887.chain_1922,blat.proc3829887.chain_1924	4	STRG.2029.2,blat.proc3829887.chain_1923	2
scaffold_25	alternate_exon	6164215	6165870	+	asmbl_33594	none	STRG.27487.1,blat.proc3829885.chain_499	2	STRG.27487.2,blat.proc3829885.chain_496	2
scaffold_21	starts_in_intron	2656471	2656471	-	asmbl_27511	none	blat.proc3829899.chain_910	1	STRG.23889.1,STRG.23889.2,STRG.23889.3,STRG.23889.4,Trinity_GG_30293_c0_g1_i10,blat.proc3829899.chain_913,blat.proc3829899.chain_914,blat.proc3829899.chain_915	8
scaffold_1	spliced_intron	20699413	20699481	+	asmbl_2637	none	STRG.1410.1,blat.proc3829871.chain_1481	2	STRG.1410.2,blat.proc3829871.chain_1480,blat.proc3829871.chain_1482	3
scaffold_21	alternate_exon	5776477	5777823	-	asmbl_27721	none	blat.proc3829899.chain_1198	1	blat.proc3829899.chain_1197,blat.proc3829899.chain_1202	2
scaffold_8	retained_intron	18541820	18542760	+	asmbl_52557	none	STRG.10744.1,blat.proc3829875.chain_3174	2	STRG.10744.2,blat.proc3829875.chain_3175	2
scaffold_25	ends_in_intron	4536466	4536466	-	asmbl_34191	none	Trinity_GG_32322_c0_g1_i2,blat.proc3829901.chain_641	2	STRG.27373.1,STRG.27373.2,Trinity_GG_32322_c0_g1_i3,Trinity_GG_32322_c0_g1_i4,blat.proc3829901.chain_640,blat.proc3829901.chain_642	6
scaffold_3	retained_intron	13179592	13179723	+	asmbl_40390	none	blat.proc3829873.chain_76	1	STRG.3679.1,Trinity_GG_2066_c0_g1_i3,blat.proc3829873.chain_75,blat.proc3829873.chain_77,blat.proc3829873.chain_78,blat.proc3829873.chain_79,blat.proc3829873.chain_80	7
scaffold_16	retained_intron	2386305	2386343	-	asmbl_16135	none	STRG.19122.1,blat.proc3829897.chain_139	2	STRG.19122.3	1
scaffold_6	alternate_exon	3806975	3809878	+	asmbl_46805,asmbl_46806,asmbl_46807	none	STRG.7379.2,STRG.7379.4,STRG.7379.5,Trinity_GG_4048_c0_g1_i1,blat.proc3829873.chain_3503	5	Trinity_GG_4055_c0_g1_i12,blat.proc3829873.chain_3525	2
scaffold_28	alt_donor	3732179	3732180	-	asmbl_37494	none	blat.proc3829901.chain_2663	1	STRG.29558.1,STRG.29558.2,blat.proc3829901.chain_2659,blat.proc3829901.chain_2660,blat.proc3829901.chain_2661,blat.proc3829901.chain_2662	6
scaffold_17	alt_acceptor	14370907	14370908	+	asmbl_18512	none	STRG.20902.1,Trinity_GG_11483_c0_g1_i2,blat.proc3829881.chain_1730	3	STRG.20902.2	1
scaffold_23	alternate_exon	5081542	5084569	-	asmbl_31601	none	STRG.25871.2,blat.proc3829899.chain_2987	2	blat.proc3829899.chain_2989	1
scaffold_10	retained_intron	11970420	11970501	+	asmbl_4792,asmbl_4794	none	blat.proc3829877.chain_1319,blat.proc3829877.chain_1322	2	STRG.12831.1,blat.proc3829877.chain_1313,blat.proc3829877.chain_1317,blat.proc3829877.chain_1321	4
scaffold_14	retained_intron	15693741	15693887	-	asmbl_13720	none	STRG.17796.1	1	STRG.17796.2	1
scaffold_13	retained_intron	274732	275404	+	asmbl_10436	none	STRG.15416.1,blat.proc3829879.chain_125	2	STRG.15416.2,blat.proc3829879.chain_124	2
scaffold_15	starts_in_intron	387284	387284	+	asmbl_13910,asmbl_13911	none	STRG.17879.3,blat.proc3829879.chain_2569	2	STRG.17879.1,STRG.17879.2,Trinity_GG_9836_c0_g1_i4,blat.proc3829879.chain_2570,blat.proc3829879.chain_2575	5
scaffold_5	spliced_intron	13664802	13665247	-	asmbl_45924,asmbl_45925	none	STRG.6576.1,STRG.6576.2,blat.proc3829889.chain_2644,blat.proc3829889.chain_2645	4	blat.proc3829889.chain_2647	1
scaffold_5	spliced_intron	6010030	6010122	+	asmbl_44051	none	STRG.6010.1,Trinity_GG_3295_c0_g1_i2,blat.proc3829873.chain_2188	3	STRG.6010.2	1
scaffold_28	alternate_exon	4240404	4240458	+	asmbl_38224	none	STRG.29590.1	1	STRG.29590.2	1
scaffold_18	ends_in_intron	7234430	7234430	+	asmbl_20758	none	Trinity_GG_11795_c0_g1_i6,blat.proc3829881.chain_2328	2	STRG.21439.1,STRG.21439.2,STRG.21439.3,blat.proc3829881.chain_2327,blat.proc3829881.chain_2330,blat.proc3829881.chain_2331	6
scaffold_7	alt_donor	9784421	9784422	-	asmbl_49878	none	STRG.9164.3	1	STRG.9164.1,STRG.9164.2,STRG.9164.4,blat.proc3829891.chain_1403,blat.proc3829891.chain_1404	5
scaffold_6	alternate_exon	15944987	15945026	+	asmbl_47618	none	blat.proc3829891.chain_588	1	STRG.8316.2	1
scaffold_11	alternate_exon	191649	194414	+	asmbl_5235	none	blat.proc3829877.chain_1751	1	STRG.13240.2,Trinity_GG_7280_c0_g1_i2,blat.proc3829877.chain_1750	3
scaffold_4	alternate_exon	1980882	1981577	+	asmbl_42479	none	STRG.4223.1,blat.proc3829873.chain_579	2	STRG.4223.3,Trinity_GG_2353_c1_g1_i1,blat.proc3829873.chain_580	3
scaffold_13	starts_in_intron	11152746	11152746	-	asmbl_10030	none	blat.proc3829895.chain_966	1	STRG.16265.1,blat.proc3829895.chain_967	2
scaffold_6	starts_in_intron	9582343	9582343	-	asmbl_48561	none	blat.proc3829891.chain_57	1	STRG.7801.1,blat.proc3829891.chain_58	2
scaffold_23	alt_acceptor	7712236	7712237	+	asmbl_31026	none	STRG.26065.2	1	STRG.26065.1,blat.proc3829883.chain_2954,blat.proc3829883.chain_2955	3
scaffold_11	ends_in_intron	9831254	9831254	+	asmbl_5874	none	blat.proc3829877.chain_2511	1	STRG.13996.3,STRG.13996.4,blat.proc3829877.chain_2514	3
scaffold_27	alternate_exon	3124554	3127318	+	asmbl_36151,asmbl_36152	none	Trinity_GG_15900_c1_g1_i2,Trinity_GG_15900_c1_g1_i3,blat.proc3829885.chain_1768,blat.proc3829885.chain_1769	4	STRG.28778.3,blat.proc3829885.chain_1770	2
scaffold_8	retained_exon	9867562	9867573	+	asmbl_52105,asmbl_52106,asmbl_52107,asmbl_52108	none	blat.proc3829875.chain_2692,blat.proc3829875.chain_2693,blat.proc3829875.chain_2694,blat.proc3829875.chain_2695	4	STRG.10225.2,STRG.10225.4,blat.proc3829875.chain_2691,blat.proc3829875.chain_2697	4
scaffold_6	retained_intron	9585760	9586086	+	asmbl_47167	none	Trinity_GG_4292_c0_g2_i1,blat.proc3829875.chain_207	2	STRG.7802.1,blat.proc3829875.chain_206	2
scaffold_8	starts_in_intron	16240841	16240841	-	asmbl_53383	none	blat.proc3829891.chain_2696	1	STRG.10604.1,blat.proc3829891.chain_2697	2
scaffold_17	alt_donor	13072591	13072592	-	asmbl_19394	none	STRG.20791.2,blat.proc3829897.chain_1718	2	STRG.20791.3	1
scaffold_25	spliced_intron	7220041	7220502	-	asmbl_34363	none	STRG.27562.2	1	blat.proc3829901.chain_880	1
scaffold_6	alt_acceptor	13711392	13711393	-	asmbl_48878	none	STRG.8115.1	1	blat.proc3829891.chain_422	1
scaffold_11	alternate_exon	16250540	16250857	+	asmbl_6123	none	STRG.14318.1,Trinity_GG_7848_c1_g1_i1,blat.proc3829877.chain_2720	3	STRG.14318.2,STRG.14318.3	2
scaffold_13	alt_acceptor	16150170	16150171	-	asmbl_10238	none	STRG.16644.4	1	STRG.16644.2,STRG.16644.3	2
scaffold_9	starts_in_intron	5657768	5657768	+	asmbl_54045	none	Trinity_GG_6203_c0_g2_i1,blat.proc3829875.chain_3622	2	STRG.11123.1,STRG.11123.2,blat.proc3829875.chain_3621	3
scaffold_6	alt_donor	15944850	15944851	+	asmbl_47621	none	STRG.8316.2	1	STRG.8316.3,blat.proc3829891.chain_588	2
scaffold_11	alt_donor	2061239	2061240	+	asmbl_5313	none	STRG.13352.1	1	STRG.13352.3	1
scaffold_1	alt_acceptor	12792304	12792305	-	asmbl_770,asmbl_773	none	STRG.898.1,blat.proc3829887.chain_768,blat.proc3829887.chain_769	3	STRG.898.3	1
scaffold_10	retained_intron	5857032	5858338	-	asmbl_3312	none	Trinity_GG_23943_c0_g1_i1,blat.proc3829893.chain_870,blat.proc3829893.chain_871	3	STRG.12401.1,STRG.12401.2,STRG.12401.3,blat.proc3829893.chain_872	4
scaffold_28	starts_in_intron	2166520	2166520	+	asmbl_38034	none	STRG.29364.3,blat.proc3829885.chain_2460	2	STRG.29364.1,STRG.29364.2,blat.proc3829885.chain_2461	3
scaffold_13	spliced_intron	3264401	3264477	+	asmbl_10658,asmbl_10660	none	STRG.15620.1,blat.proc3829879.chain_336,blat.proc3829879.chain_337	3	blat.proc3829879.chain_335	1
scaffold_2	spliced_intron	16087681	16088030	-	asmbl_23682,asmbl_23685,asmbl_23686	none	STRG.2559.1,blat.proc3829887.chain_2398,blat.proc3829887.chain_2399,blat.proc3829887.chain_2401	4	Trinity_GG_18420_c0_g1_i3,blat.proc3829887.chain_2400	2
scaffold_1	alt_donor	6299675	6299676	-	asmbl_359	none	STRG.424.4	1	STRG.424.1,STRG.424.2,STRG.424.5,blat.proc3829887.chain_303,blat.proc3829887.chain_304,blat.proc3829887.chain_306,blat.proc3829887.chain_307	7
scaffold_14	alt_acceptor	11665576	11665577	-	asmbl_13498,asmbl_13499	none	STRG.17495.2,blat.proc3829895.chain_2184,blat.proc3829895.chain_2187	3	STRG.17495.1,blat.proc3829895.chain_2185,blat.proc3829895.chain_2186	3
scaffold_11	skipped_exon	13097080	13097573	+	asmbl_5997,asmbl_6000,asmbl_6003,asmbl_6007	none	STRG.14176.1,blat.proc3829877.chain_2672,blat.proc3829877.chain_2674,blat.proc3829877.chain_2676,blat.proc3829877.chain_2677	5	STRG.14176.2,STRG.14176.3,STRG.14176.4,blat.proc3829877.chain_2669,blat.proc3829877.chain_2670,blat.proc3829877.chain_2671,blat.proc3829877.chain_2673,blat.proc3829877.chain_2675,blat.proc3829877.chain_2678	9
scaffold_1	spliced_intron	14277132	14277229	+	asmbl_2342,asmbl_2343,asmbl_2347	none	STRG.1020.1,STRG.1020.2,Trinity_GG_617_c0_g1_i4,Trinity_GG_617_c0_g1_i5,blat.proc3829871.chain_1109,blat.proc3829871.chain_1110	6	STRG.1020.3,Trinity_GG_617_c0_g1_i1,blat.proc3829871.chain_1111	3
scaffold_15	alternate_exon	4117266	4118011	-	asmbl_15130,asmbl_15131,asmbl_15132,asmbl_15135	none	STRG.18141.1,STRG.18141.2,STRG.18141.3,STRG.18141.4,Trinity_GG_27184_c0_g1_i1,blat.proc3829895.chain_2826,blat.proc3829895.chain_2828,blat.proc3829895.chain_2829	8	Trinity_GG_27184_c0_g2_i1,blat.proc3829895.chain_2830	2
scaffold_12	retained_intron	9152051	9152228	+	asmbl_8824	none	blat.proc3829877.chain_3441	1	STRG.14908.1,STRG.14908.2,blat.proc3829877.chain_3438,blat.proc3829877.chain_3440	4
scaffold_15	retained_exon	14633945	14634042	-	asmbl_15751	none	STRG.18867.2,blat.proc3829895.chain_3644	2	STRG.18867.3,blat.proc3829895.chain_3643	2
scaffold_21	alt_acceptor	1684484	1684485	-	asmbl_27439	none	STRG.23805.1,blat.proc3829899.chain_871	2	STRG.23805.2	1
scaffold_6	starts_in_intron	18874590	18874590	+	asmbl_47805	none	blat.proc3829875.chain_899	1	STRG.8549.1,Trinity_GG_4674_c0_g1_i2,blat.proc3829875.chain_898	3
scaffold_17	alternate_exon	8220043	8220292	+	asmbl_18082	none	STRG.20435.2	1	STRG.20435.3	1
scaffold_6	ends_in_intron	10384784	10384784	+	asmbl_47217	none	blat.proc3829875.chain_245	1	STRG.7870.1,blat.proc3829875.chain_244,blat.proc3829875.chain_246	3
scaffold_2	alternate_exon	16361522	16361551	+	asmbl_25160	none	STRG.2574.4	1	STRG.2574.1,STRG.2574.2,STRG.2574.3,Trinity_GG_1456_c0_g1_i1,Trinity_GG_1456_c0_g1_i3,blat.proc3829871.chain_2763,blat.proc3829871.chain_2764	7
scaffold_25	retained_intron	5377112	5377334	-	asmbl_34232	none	STRG.27432.1,Trinity_GG_32393_c0_g1_i1,blat.proc3829901.chain_759	3	STRG.27432.2,blat.proc3829901.chain_760	2
scaffold_6	retained_exon	3030026	3030054	+	asmbl_46738	none	STRG.7303.1,blat.proc3829873.chain_3422	2	STRG.7303.2,blat.proc3829873.chain_3423	2
scaffold_13	alt_acceptor	4655375	4655376	+	asmbl_10802,asmbl_10803	none	STRG.15788.1,STRG.15788.2	2	STRG.15788.3,blat.proc3829879.chain_486,blat.proc3829879.chain_487	3
scaffold_2	retained_intron	5203179	5203697	+	asmbl_24422,asmbl_24423,asmbl_24426,asmbl_24427	none	STRG.1940.1,STRG.1940.2,STRG.1940.3,Trinity_GG_1078_c0_g1_i1,Trinity_GG_1078_c0_g1_i2,Trinity_GG_1078_c0_g1_i3,blat.proc3829871.chain_1967,blat.proc3829871.chain_1968,blat.proc3829871.chain_1969,blat.proc3829871.chain_1971	10	Trinity_GG_1078_c0_g1_i5,blat.proc3829871.chain_1970	2
scaffold_7	spliced_intron	12053958	12054062	+	asmbl_51085,asmbl_51088	none	STRG.9298.2,Trinity_GG_5159_c0_g1_i4,blat.proc3829875.chain_1757	3	blat.proc3829875.chain_1755	1
scaffold_7	starts_in_intron	5916606	5916606	-	asmbl_49716	none	blat.proc3829891.chain_1170	1	STRG.8887.2,blat.proc3829891.chain_1167,blat.proc3829891.chain_1168	3
scaffold_18	spliced_intron	236302	236439	-	asmbl_19604,asmbl_19605	none	STRG.20966.1,blat.proc3829897.chain_1862,blat.proc3829897.chain_1863	3	STRG.20966.2,STRG.20966.3,blat.proc3829897.chain_1861	3
scaffold_20	spliced_intron	7471397	7471647	-	asmbl_26825,asmbl_26827,asmbl_26828,asmbl_26829,asmbl_26830,asmbl_26831,asmbl_26833	none	STRG.23308.1,blat.proc3829899.chain_389,blat.proc3829899.chain_391,blat.proc3829899.chain_394,blat.proc3829899.chain_395,blat.proc3829899.chain_396,blat.proc3829899.chain_399,blat.proc3829899.chain_401	8	Trinity_GG_30045_c0_g1_i4,blat.proc3829899.chain_392	2
scaffold_9	ends_in_intron	1944669	1944669	-	asmbl_54823	none	blat.proc3829891.chain_3034	1	STRG.10864.1,blat.proc3829891.chain_3035	2
scaffold_340	spliced_intron	809	1024	+	asmbl_40967	none	STRG.30267.1	1	STRG.30267.2,Trinity_GG_16763_c0_g1_i8,Trinity_GG_24043_c0_g1_i3,blat.proc3829885.chain_3309,blat.proc3829893.chain_1073,blat.proc3829893.chain_1074	6
scaffold_28	spliced_intron	5249878	5250166	-	asmbl_37596,asmbl_37598	none	STRG.29654.1,blat.proc3829901.chain_2694,blat.proc3829901.chain_2696	3	blat.proc3829901.chain_2695	1
scaffold_27	ends_in_intron	1959058	1959058	+	asmbl_36014	none	blat.proc3829885.chain_1694	1	STRG.28656.1,STRG.28656.2,STRG.28656.3,blat.proc3829885.chain_1692,blat.proc3829885.chain_1693,blat.proc3829885.chain_1696	6
scaffold_8	spliced_intron	16279130	16279219	+	asmbl_52437	none	Trinity_GG_5904_c0_g1_i2,blat.proc3829875.chain_3118	2	Trinity_GG_5904_c0_g1_i1,blat.proc3829875.chain_3117	2
scaffold_12	retained_intron	6544970	6545003	+	asmbl_8660,asmbl_8662	none	STRG.14744.1,Trinity_GG_8141_c0_g1_i1,Trinity_GG_8141_c0_g1_i2,blat.proc3829877.chain_3228,blat.proc3829877.chain_3229	5	STRG.14744.2	1
scaffold_14	retained_intron	2886580	2886644	-	asmbl_12961,asmbl_12963,asmbl_12964	none	STRG.16870.1,STRG.16870.2,STRG.16870.4,blat.proc3829895.chain_1571	4	STRG.16870.3,blat.proc3829895.chain_1570,blat.proc3829895.chain_1574	3
scaffold_1	retained_intron	4874711	4874784	-	asmbl_224	none	STRG.296.3	1	STRG.296.2	1
scaffold_28	alternate_exon	5634414	5635855	-	asmbl_37631,asmbl_37633,asmbl_37636	none	STRG.29677.1,blat.proc3829901.chain_2822,blat.proc3829901.chain_2824,blat.proc3829901.chain_2825	4	STRG.29677.2,STRG.29677.3,STRG.29677.4,Trinity_GG_33665_c0_g1_i3,blat.proc3829901.chain_2827	5
scaffold_2	alt_donor	2907051	2907052	-	asmbl_22971	none	blat.proc3829887.chain_1508	1	STRG.1728.1,STRG.1728.2,blat.proc3829887.chain_1509,blat.proc3829887.chain_1510,blat.proc3829887.chain_1511,blat.proc3829887.chain_1512	6
scaffold_28	alt_acceptor	8330162	8330163	-	asmbl_37787	none	STRG.29879.1,blat.proc3829901.chain_2989	2	STRG.29879.2,blat.proc3829901.chain_2990	2
scaffold_7	starts_in_intron	12370120	12370120	+	asmbl_51127	none	Trinity_GG_5186_c0_g2_i1,blat.proc3829875.chain_1805	2	STRG.9325.1,blat.proc3829875.chain_1799,blat.proc3829875.chain_1800,blat.proc3829875.chain_1804	4
scaffold_7	retained_intron	12387041	12387135	-	asmbl_50021	none	blat.proc3829891.chain_1537	1	STRG.9328.1,blat.proc3829891.chain_1531,blat.proc3829891.chain_1532,blat.proc3829891.chain_1533,blat.proc3829891.chain_1534,blat.proc3829891.chain_1535,blat.proc3829891.chain_1536,blat.proc3829891.chain_1538	8
scaffold_8	skipped_exon	11463679	11465108	+	asmbl_52215	none	STRG.10344.1	1	STRG.10344.2,STRG.10344.3,Trinity_GG_5769_c0_g1_i1,blat.proc3829875.chain_2872	4
scaffold_13	alternate_exon	8100335	8101749	+	asmbl_11083	none	STRG.16076.2,blat.proc3829879.chain_796	2	STRG.16076.1,Trinity_GG_8832_c0_g1_i1,Trinity_GG_8832_c2_g1_i1,blat.proc3829879.chain_795,blat.proc3829879.chain_797	5
scaffold_20	alt_donor	11679287	11679288	-	asmbl_27105	none	STRG.23659.3,blat.proc3829899.chain_658	2	STRG.23659.1,blat.proc3829899.chain_657	2
scaffold_20	alt_acceptor	9543129	9543130	+	asmbl_26021	none	STRG.23477.2	1	STRG.23477.1,Trinity_GG_12965_c0_g1_i1,blat.proc3829883.chain_561	3
scaffold_12	retained_exon	3009495	3009646	-	asmbl_7480	none	STRG.14536.2	1	STRG.14536.1,blat.proc3829893.chain_2902	2
scaffold_8	starts_in_intron	17495543	17495543	+	asmbl_52473,asmbl_52477	none	STRG.10668.5,Trinity_GG_5917_c0_g2_i1,blat.proc3829875.chain_3159	3	STRG.10668.1,STRG.10668.3,blat.proc3829875.chain_3152,blat.proc3829875.chain_3153,blat.proc3829875.chain_3156,blat.proc3829875.chain_3157,blat.proc3829875.chain_3158	7
scaffold_25	retained_intron	6253628	6253853	+	asmbl_33603,asmbl_33605	none	Trinity_GG_15150_c0_g1_i3,blat.proc3829885.chain_519,blat.proc3829885.chain_521	3	STRG.27492.1,blat.proc3829885.chain_517,blat.proc3829885.chain_518	3
scaffold_16	ends_in_intron	2170121	2170121	+	asmbl_16904	none	blat.proc3829879.chain_3734	1	STRG.19105.1,STRG.19105.2,blat.proc3829879.chain_3733,blat.proc3829879.chain_3737,blat.proc3829879.chain_3738,blat.proc3829879.chain_3739	6
scaffold_4	alt_acceptor	4113774	4113775	-	asmbl_41228	none	blat.proc3829889.chain_377	1	STRG.4314.1,blat.proc3829889.chain_373,blat.proc3829889.chain_375,blat.proc3829889.chain_376,blat.proc3829889.chain_378	5
scaffold_26	retained_intron	10097149	10097583	-	asmbl_35080,asmbl_35084	none	Trinity_GG_32937_c0_g1_i3,blat.proc3829901.chain_1637,blat.proc3829901.chain_1639	3	STRG.28512.2	1
scaffold_1	starts_in_intron	5684486	5684486	+	asmbl_1743	none	blat.proc3829871.chain_420	1	STRG.365.1,STRG.365.2,blat.proc3829871.chain_421	3
scaffold_4	retained_intron	17964335	17964393	-	asmbl_42085	none	STRG.5396.1	1	blat.proc3829889.chain_1444	1
scaffold_7	ends_in_intron	12418120	12418120	-	asmbl_50029	none	blat.proc3829891.chain_1564	1	STRG.9334.1,blat.proc3829891.chain_1562,blat.proc3829891.chain_1563,blat.proc3829891.chain_1566	4
scaffold_1	retained_intron	12334369	12334524	-	asmbl_710,asmbl_711,asmbl_718,asmbl_721	none	STRG.843.2,blat.proc3829887.chain_737,blat.proc3829887.chain_741,blat.proc3829887.chain_743,blat.proc3829887.chain_746	5	blat.proc3829887.chain_739	1
scaffold_8	starts_in_intron	12027248	12027248	+	asmbl_52295	none	blat.proc3829875.chain_2931	1	STRG.10394.1,Trinity_GG_5804_c0_g1_i3,blat.proc3829875.chain_2930	3
scaffold_20	alt_acceptor	1754286	1754287	+	asmbl_25605	none	STRG.22907.2,Trinity_GG_12636_c0_g1_i2,blat.proc3829883.chain_55	3	STRG.22907.3,Trinity_GG_12636_c0_g1_i4,blat.proc3829883.chain_58	3
scaffold_15	alt_donor	9054580	9054581	-	asmbl_15392	none	STRG.18449.2,blat.proc3829895.chain_3232	2	Trinity_GG_27384_c2_g1_i1,blat.proc3829895.chain_3229,blat.proc3829895.chain_3235	3
scaffold_10	alt_acceptor	979066	979067	-	asmbl_2941	none	STRG.11980.1	1	STRG.11980.2,STRG.11980.3,blat.proc3829893.chain_423	3
scaffold_2	alt_donor	19372751	19372752	-	asmbl_23883	none	STRG.2804.2,blat.proc3829887.chain_2632	2	STRG.2804.1,STRG.2804.3,blat.proc3829887.chain_2630,blat.proc3829887.chain_2631	4
scaffold_21	alt_donor	7291024	7291025	-	asmbl_27815	none	STRG.24237.2,blat.proc3829899.chain_1307	2	STRG.24237.1,STRG.24237.3,blat.proc3829899.chain_1309	3
scaffold_20	skipped_exon	8431167	8431827	+	asmbl_25933	none	STRG.23377.2,blat.proc3829883.chain_452	2	STRG.23377.1,blat.proc3829883.chain_453	2
scaffold_10	alt_donor	7120640	7120641	-	asmbl_3447	none	STRG.12522.2	1	STRG.12522.1,blat.proc3829893.chain_951	2
scaffold_8	alt_donor	6809263	6809264	-	asmbl_52881,asmbl_52882	none	STRG.10035.1,blat.proc3829891.chain_2192,blat.proc3829891.chain_2194	3	STRG.10035.3	1
scaffold_24	starts_in_intron	729440	729440	-	asmbl_32700	none	blat.proc3829899.chain_3400	1	STRG.26335.1,blat.proc3829899.chain_3401	2
scaffold_8	starts_in_intron	14389490	14389490	-	asmbl_53313,asmbl_53314	none	Trinity_GG_22854_c0_g1_i6,blat.proc3829891.chain_2660,blat.proc3829891.chain_2661	3	STRG.10517.1,STRG.10517.2,blat.proc3829891.chain_2657,blat.proc3829891.chain_2658,blat.proc3829891.chain_2659	5
scaffold_28	starts_in_intron	7498275	7498275	+	asmbl_38379	none	Trinity_GG_16469_c3_g1_i1,blat.proc3829885.chain_2824	2	STRG.29807.1,blat.proc3829885.chain_2822	2
scaffold_2	ends_in_intron	16280984	16280984	+	asmbl_25128	none	STRG.2564.3	1	STRG.2564.1,blat.proc3829871.chain_2777,blat.proc3829871.chain_2780,blat.proc3829871.chain_2781,blat.proc3829871.chain_2782,blat.proc3829871.chain_2783,blat.proc3829871.chain_2784,blat.proc3829871.chain_2785,blat.proc3829871.chain_2786	9
scaffold_1	alternate_exon	3605865	3605911	+	asmbl_1609	none	STRG.220.2,Trinity_GG_129_c0_g1_i2,blat.proc3829871.chain_219	3	STRG.220.1,blat.proc3829871.chain_220	2
scaffold_9	spliced_intron	11795862	11796216	-	asmbl_55265,asmbl_55266,asmbl_55270	none	STRG.11484.3,STRG.11484.5,blat.proc3829891.chain_3592	3	STRG.11484.4,blat.proc3829891.chain_3594	2
scaffold_7	starts_in_intron	15647939	15647939	+	asmbl_51339	none	STRG.9551.4,blat.proc3829875.chain_2034	2	STRG.9551.1,STRG.9551.2,STRG.9551.3,blat.proc3829875.chain_2030,blat.proc3829875.chain_2033	5
scaffold_28	alt_acceptor	2908038	2908039	-	asmbl_37425	none	STRG.29464.2	1	STRG.29464.1	1
scaffold_16	alternate_exon	12017989	12018159	-	asmbl_16559	none	STRG.19716.1,blat.proc3829897.chain_673	2	blat.proc3829897.chain_674	1
scaffold_8	alt_acceptor	9126052	9126053	-	asmbl_53006,asmbl_53007	none	STRG.10161.4,blat.proc3829891.chain_2335	2	STRG.10161.1,STRG.10161.2,STRG.10161.3,blat.proc3829891.chain_2336	4
scaffold_12	alternate_exon	10180395	10181008	+	asmbl_8874	none	STRG.14975.2,blat.proc3829877.chain_3490	2	STRG.14975.1	1
scaffold_4	retained_intron	4692582	4692952	+	asmbl_42631	none	Trinity_GG_2414_c0_g1_i9,blat.proc3829873.chain_715	2	STRG.4376.1,blat.proc3829873.chain_714,blat.proc3829873.chain_716,blat.proc3829873.chain_717	4
scaffold_9	retained_intron	8399726	8399808	-	asmbl_55094	none	STRG.11250.2	1	STRG.11250.1,blat.proc3829891.chain_3406	2
scaffold_8	alt_acceptor	7809947	7809948	+	asmbl_51985	none	STRG.10091.2	1	STRG.10091.1,blat.proc3829875.chain_2620	2
scaffold_4	alt_acceptor	4378466	4378467	-	asmbl_41247	none	STRG.4338.2	1	STRG.4338.1,blat.proc3829889.chain_459	2
scaffold_21	alt_acceptor	5134795	5134796	-	asmbl_27638	none	STRG.24046.7	1	STRG.24046.1,STRG.24046.3,STRG.24046.4	3
scaffold_20	alt_acceptor	4374682	4374683	+	asmbl_25733	none	STRG.23107.2	1	STRG.23107.1,blat.proc3829883.chain_248	2
scaffold_2	skipped_exon	5374792	5376203	-	asmbl_23169	none	STRG.1946.2,blat.proc3829887.chain_1848	2	blat.proc3829887.chain_1847	1
scaffold_11	spliced_intron	1305199	1305286	-	asmbl_6403	none	blat.proc3829893.chain_1780	1	Trinity_GG_24473_c0_g1_i2,blat.proc3829893.chain_1779	2
scaffold_16	starts_in_intron	1779501	1779501	+	asmbl_16879	none	Trinity_GG_10475_c0_g1_i1,blat.proc3829879.chain_3711	2	STRG.19095.1,STRG.19095.2,Trinity_GG_10475_c0_g1_i5,blat.proc3829879.chain_3709,blat.proc3829879.chain_3712,blat.proc3829879.chain_3714	6
scaffold_17	alt_acceptor	1510319	1510320	+	asmbl_17740	none	STRG.19975.2	1	STRG.19975.1,Trinity_GG_10949_c0_g1_i1,Trinity_GG_10949_c0_g1_i2,blat.proc3829881.chain_815,blat.proc3829881.chain_816	5
scaffold_4	spliced_intron	3237101	3237225	-	asmbl_41164,asmbl_41166,asmbl_41167,asmbl_41168	none	STRG.4247.1,STRG.4247.2,STRG.4247.3,STRG.4247.4,blat.proc3829889.chain_367	5	Trinity_GG_19386_c0_g1_i6,blat.proc3829889.chain_369,blat.proc3829889.chain_371	3
scaffold_13	ends_in_intron	4607189	4607189	-	asmbl_9607	none	STRG.15781.3	1	STRG.15781.1,Trinity_GG_25880_c0_g1_i1,blat.proc3829895.chain_530	3
scaffold_3	spliced_intron	9518813	9518999	+	asmbl_40185,asmbl_40186,asmbl_40187	none	STRG.3434.1,STRG.3434.2,Trinity_GG_1959_c0_g1_i1,blat.proc3829871.chain_3639,blat.proc3829871.chain_3641	5	Trinity_GG_1959_c0_g1_i2,Trinity_GG_1959_c0_g1_i3,blat.proc3829871.chain_3637,blat.proc3829871.chain_3638	4
scaffold_21	alternate_exon	254802	254929	-	asmbl_27314,asmbl_27315,asmbl_27316,asmbl_27323,asmbl_27324	none	STRG.23718.3,STRG.23718.4,STRG.23718.8,blat.proc3829899.chain_781,blat.proc3829899.chain_782,blat.proc3829899.chain_786,blat.proc3829899.chain_788,blat.proc3829899.chain_792	8	STRG.23718.1,STRG.23718.2,blat.proc3829899.chain_793	3
scaffold_23	spliced_intron	4311119	4313057	+	asmbl_30798,asmbl_30799,asmbl_30800,asmbl_30801	none	STRG.25826.1,Trinity_GG_14254_c0_g1_i1,Trinity_GG_14254_c0_g1_i7,blat.proc3829883.chain_2712,blat.proc3829883.chain_2715,blat.proc3829883.chain_2716	6	blat.proc3829883.chain_2711	1
scaffold_21	skipped_exon	9924489	9926757	-	asmbl_28013	none	STRG.24446.5	1	STRG.24446.1,STRG.24446.4,STRG.24446.6,blat.proc3829899.chain_1513	4
scaffold_14	retained_exon	13262702	13262758	-	asmbl_13616	none	STRG.17606.1	1	STRG.17606.2	1
scaffold_1	retained_exon	12466933	12467942	-	asmbl_725	none	STRG.864.3	1	STRG.864.1,STRG.864.2,STRG.864.4	3
scaffold_23	alt_donor	2164644	2164645	-	asmbl_31417,asmbl_31419	none	STRG.25669.1,STRG.25669.6	2	STRG.25669.3,STRG.25669.4,STRG.25669.5,STRG.25669.7	4
scaffold_13	alt_donor	2653583	2653584	-	asmbl_9425,asmbl_9428	none	STRG.15566.1,blat.proc3829895.chain_303,blat.proc3829895.chain_305	3	STRG.15566.2	1
scaffold_6	starts_in_intron	8587253	8587253	+	asmbl_47097	none	Trinity_GG_4242_c0_g1_i5,blat.proc3829875.chain_96	2	STRG.7733.1,Trinity_GG_4242_c0_g1_i1,blat.proc3829875.chain_97,blat.proc3829875.chain_99	4
scaffold_14	alt_donor	15565892	15565893	+	asmbl_12607	none	STRG.17784.2	1	STRG.17784.3	1
scaffold_12	retained_intron	9505734	9505871	+	asmbl_8828,asmbl_8829	none	STRG.14922.2,Trinity_GG_8259_c0_g1_i1,Trinity_GG_8259_c0_g1_i2,blat.proc3829877.chain_3449,blat.proc3829877.chain_3451	5	STRG.14922.1,Trinity_GG_8259_c0_g1_i3,blat.proc3829877.chain_3450	3
scaffold_1	retained_intron	4602131	4602216	+	asmbl_1677	none	Trinity_GG_136_c0_g1_i1,blat.proc3829871.chain_243	2	STRG.282.1,blat.proc3829871.chain_244	2
scaffold_10	ends_in_intron	15510813	15510813	+	asmbl_4967	none	blat.proc3829877.chain_1614	1	STRG.13056.1,blat.proc3829877.chain_1613	2
scaffold_4	retained_intron	12711355	12711630	+	asmbl_43070	none	STRG.4912.3,Trinity_GG_2707_c0_g1_i1,blat.proc3829873.chain_1199	3	blat.proc3829873.chain_1195	1
scaffold_13	ends_in_intron	5507049	5507049	+	asmbl_10840,asmbl_10841	none	STRG.15830.1,STRG.15830.3,Trinity_GG_8666_c0_g1_i1,blat.proc3829879.chain_461,blat.proc3829879.chain_463	5	STRG.15830.4,Trinity_GG_8666_c0_g1_i3,blat.proc3829879.chain_462	3
scaffold_1	retained_intron	1608748	1608955	-	asmbl_80	none	Trinity_GG_17079_c0_g1_i2,blat.proc3829887.chain_23	2	blat.proc3829887.chain_22	1
scaffold_1	retained_intron	6972741	6972914	+	asmbl_1863	none	blat.proc3829871.chain_551	1	STRG.488.1,blat.proc3829871.chain_550,blat.proc3829871.chain_552,blat.proc3829871.chain_553	4
scaffold_28	alt_donor	3318284	3318285	+	asmbl_38165	none	STRG.29526.2,blat.proc3829885.chain_2657	2	STRG.29526.1,blat.proc3829885.chain_2656	2
scaffold_4	alternate_exon	7245429	7245466	+	asmbl_42811	none	STRG.4556.1,Trinity_GG_2528_c0_g1_i1	2	STRG.4556.2,Trinity_GG_2528_c1_g1_i1,blat.proc3829873.chain_930	3
scaffold_25	spliced_intron	4319009	4319168	+	asmbl_33486,asmbl_33487	none	STRG.27342.1,blat.proc3829885.chain_382	2	STRG.27342.2,STRG.27342.3,Trinity_GG_15082_c0_g1_i1,Trinity_GG_15082_c0_g1_i2,blat.proc3829885.chain_383,blat.proc3829885.chain_384,blat.proc3829885.chain_385	7
scaffold_15	starts_in_intron	4961496	4961496	+	asmbl_14126	none	blat.proc3829879.chain_2760	1	STRG.18193.1,blat.proc3829879.chain_2759,blat.proc3829879.chain_2761	3
scaffold_12	alt_donor	6420307	6420308	+	asmbl_8639,asmbl_8640,asmbl_8641,asmbl_8642,asmbl_8643,asmbl_8644,asmbl_8645	none	STRG.14730.1,STRG.14730.2,STRG.14730.3,STRG.14730.4,Trinity_GG_8129_c0_g1_i5,blat.proc3829877.chain_3201,blat.proc3829877.chain_3203,blat.proc3829877.chain_3204,blat.proc3829877.chain_3205,blat.proc3829877.chain_3206	10	blat.proc3829877.chain_3202	1
scaffold_18	spliced_intron	3789471	3789712	-	asmbl_19810,asmbl_19812,asmbl_19816	none	STRG.21185.2,blat.proc3829897.chain_2077,blat.proc3829897.chain_2083	3	STRG.21185.1,STRG.21185.3,blat.proc3829897.chain_2078,blat.proc3829897.chain_2079,blat.proc3829897.chain_2080,blat.proc3829897.chain_2084,blat.proc3829897.chain_2085	7
scaffold_5	alt_donor	15893580	15893581	+	asmbl_44687,asmbl_44688	none	STRG.6770.1,STRG.6770.2,blat.proc3829873.chain_2800,blat.proc3829873.chain_2801	4	STRG.6770.3	1
scaffold_1	alt_donor	16225433	16225434	+	asmbl_2448	none	STRG.1132.1,blat.proc3829871.chain_1217	2	STRG.1132.2,blat.proc3829871.chain_1216	2
scaffold_2	alternate_exon	14278992	14279018	+	asmbl_24934	none	blat.proc3829871.chain_2543	1	STRG.2425.1,STRG.2425.2,STRG.2425.3,STRG.2425.4,blat.proc3829871.chain_2542,blat.proc3829871.chain_2546	6
scaffold_11	retained_intron	13254292	13254374	-	asmbl_7105	none	STRG.14183.1,blat.proc3829893.chain_2646	2	STRG.14183.3,blat.proc3829893.chain_2644	2
scaffold_22	retained_intron	1008363	1008659	+	asmbl_29209,asmbl_29211	none	STRG.24742.4,blat.proc3829883.chain_1810	2	STRG.24742.2,blat.proc3829883.chain_1807,blat.proc3829883.chain_1808,blat.proc3829883.chain_1809	4
scaffold_4	alternate_exon	4414503	4414536	+	asmbl_42592	none	blat.proc3829873.chain_693	1	STRG.4344.1,STRG.4344.2,STRG.4344.4,blat.proc3829873.chain_682,blat.proc3829873.chain_683,blat.proc3829873.chain_685,blat.proc3829873.chain_691,blat.proc3829873.chain_697	8
scaffold_2	spliced_intron	17014420	17014564	-	asmbl_23721,asmbl_23722	none	STRG.2611.1,STRG.2611.3,blat.proc3829887.chain_2414,blat.proc3829887.chain_2416	4	STRG.2611.2,Trinity_GG_18427_c0_g1_i2,blat.proc3829887.chain_2415	3
scaffold_2	alt_acceptor	17454216	17454217	+	asmbl_25199	none	STRG.2628.1	1	blat.proc3829871.chain_2847	1
scaffold_18	spliced_intron	9164378	9164478	+	asmbl_20900,asmbl_20902	none	STRG.21548.1,Trinity_GG_11895_c0_g1_i2,Trinity_GG_11895_c0_g1_i3,blat.proc3829881.chain_2505,blat.proc3829881.chain_2507	5	Trinity_GG_11895_c0_g1_i1,blat.proc3829881.chain_2506	2
scaffold_9	alt_acceptor	16282211	16282212	-	asmbl_55529	none	STRG.11770.1,blat.proc3829893.chain_149	2	STRG.11770.3	1
scaffold_8	retained_intron	5857393	5857551	+	asmbl_51898	none	STRG.9989.2,Trinity_GG_5569_c0_g1_i2,blat.proc3829875.chain_2499	3	STRG.9989.1,STRG.9989.3,STRG.9989.4,Trinity_GG_5569_c0_g1_i1,Trinity_GG_5569_c0_g1_i3,Trinity_GG_5569_c0_g1_i4,blat.proc3829875.chain_2500,blat.proc3829875.chain_2501,blat.proc3829875.chain_2502	9
scaffold_3	alt_acceptor	14479862	14479863	+	asmbl_40490	none	STRG.3787.1,blat.proc3829873.chain_203	2	STRG.3787.2,Trinity_GG_2129_c0_g1_i2,blat.proc3829873.chain_201,blat.proc3829873.chain_202	4
scaffold_13	alt_donor	4508853	4508854	+	asmbl_10786	none	STRG.15762.2,blat.proc3829879.chain_373	2	STRG.15762.1,blat.proc3829879.chain_372	2
scaffold_22	spliced_intron	7901370	7901566	-	asmbl_30208	none	STRG.25123.2,Trinity_GG_31043_c0_g1_i1,blat.proc3829899.chain_2200	3	STRG.25123.1,STRG.25123.3,Trinity_GG_31043_c0_g1_i2,blat.proc3829899.chain_2199	4
scaffold_8	alt_acceptor	9378709	9378710	-	asmbl_53020,asmbl_53021,asmbl_53022,asmbl_53026,asmbl_53027	none	STRG.10194.3,STRG.10194.5,STRG.10194.6,blat.proc3829891.chain_2355,blat.proc3829891.chain_2356,blat.proc3829891.chain_2358	6	STRG.10194.4	1
scaffold_2	skipped_exon	6510561	6512748	-	asmbl_23236,asmbl_23238	none	STRG.2013.2,blat.proc3829887.chain_1932	2	STRG.2013.3	1
scaffold_5	spliced_intron	6012524	6013080	-	asmbl_45465	none	STRG.6011.1,blat.proc3829889.chain_2115	2	blat.proc3829889.chain_2117	1
scaffold_3	alt_donor	19901535	19901536	-	asmbl_39624	none	STRG.4103.1,blat.proc3829889.chain_151	2	STRG.4103.2	1
scaffold_10	alt_acceptor	7667502	7667503	+	asmbl_4567,asmbl_4570,asmbl_4571	none	STRG.12546.1,STRG.12546.3,blat.proc3829877.chain_1137,blat.proc3829877.chain_1139	4	STRG.12546.2,blat.proc3829877.chain_1138	2
scaffold_16	alt_acceptor	3707155	3707156	+	asmbl_16937	none	STRG.19166.2	1	Trinity_GG_10516_c0_g1_i4,blat.proc3829881.chain_34,blat.proc3829881.chain_37	3
scaffold_10	ends_in_intron	16532185	16532185	+	asmbl_4994,asmbl_4998	none	blat.proc3829877.chain_1621,blat.proc3829901.chain_3269	2	STRG.13112.1,STRG.13112.3,blat.proc3829877.chain_1619,blat.proc3829877.chain_1622	4
scaffold_14	alt_acceptor	8251788	8251789	-	asmbl_13254	none	STRG.17231.1	1	STRG.17231.2,Trinity_GG_26667_c0_g1_i1,blat.proc3829895.chain_1922	3
scaffold_9	starts_in_intron	5288093	5288093	+	asmbl_54011	none	Trinity_GG_6187_c2_g1_i1,blat.proc3829875.chain_3578	2	STRG.11103.1,STRG.11103.2,STRG.11103.3,blat.proc3829875.chain_3571,blat.proc3829875.chain_3572,blat.proc3829875.chain_3574,blat.proc3829875.chain_3576	7
scaffold_22	spliced_intron	224379	224570	-	asmbl_29837,asmbl_29838,asmbl_29842	none	STRG.24671.1,STRG.24671.3,Trinity_GG_30815_c0_g1_i1,Trinity_GG_30815_c0_g1_i3,blat.proc3829899.chain_1813,blat.proc3829899.chain_1816	6	STRG.24671.2,Trinity_GG_30815_c0_g1_i2,Trinity_GG_30815_c0_g1_i5,blat.proc3829899.chain_1814,blat.proc3829899.chain_1815	5
scaffold_23	ends_in_intron	5616090	5616090	-	asmbl_31644,asmbl_31645,asmbl_31646,asmbl_31650	none	STRG.25917.2,STRG.25917.3,STRG.25917.4,Trinity_GG_31507_c0_g2_i3,blat.proc3829899.chain_3025,blat.proc3829899.chain_3026,blat.proc3829899.chain_3027	7	STRG.25917.1,blat.proc3829899.chain_3024	2
scaffold_8	retained_intron	16396748	16397082	-	asmbl_53391	none	Trinity_GG_22871_c0_g1_i9,blat.proc3829891.chain_2690	2	STRG.10619.1,STRG.10619.2,blat.proc3829891.chain_2683,blat.proc3829891.chain_2684,blat.proc3829891.chain_2685,blat.proc3829891.chain_2686,blat.proc3829891.chain_2687,blat.proc3829891.chain_2688,blat.proc3829891.chain_2689,blat.proc3829891.chain_2691	10
scaffold_10	spliced_intron	6870182	6870280	-	asmbl_3423,asmbl_3424,asmbl_3425,asmbl_3426,asmbl_3427,asmbl_3428	none	STRG.12505.1,blat.proc3829893.chain_990,blat.proc3829893.chain_991,blat.proc3829893.chain_994,blat.proc3829893.chain_996,blat.proc3829893.chain_997,blat.proc3829893.chain_998,blat.proc3829893.chain_999	8	Trinity_GG_24004_c0_g1_i5	1
scaffold_6	alt_donor	12888457	12888458	+	asmbl_47377	none	STRG.8041.2	1	STRG.8041.1,blat.proc3829875.chain_390	2
scaffold_14	skipped_exon	9272764	9273885	-	asmbl_13342	none	STRG.17323.4	1	STRG.17323.1,STRG.17323.2,blat.proc3829895.chain_1995,blat.proc3829895.chain_1996,blat.proc3829895.chain_1997	5
scaffold_9	alternate_exon	5757441	5760712	-	asmbl_54990	none	STRG.11135.1,Trinity_GG_23161_c1_g1_i1,Trinity_GG_23161_c2_g1_i1,blat.proc3829891.chain_3242,blat.proc3829891.chain_3244	5	STRG.11135.2	1
scaffold_3	spliced_intron	14187141	14189188	-	asmbl_39281	none	STRG.3759.2,blat.proc3829887.chain_3546	2	STRG.3759.1,STRG.3759.3,STRG.3759.4,Trinity_GG_19089_c0_g1_i1,blat.proc3829887.chain_3545	5
scaffold_12	ends_in_intron	9979278	9979278	-	asmbl_7836	none	blat.proc3829893.chain_3274	1	STRG.14956.1,blat.proc3829893.chain_3273	2
scaffold_13	retained_intron	272653	275404	+	asmbl_10436	none	STRG.15416.1,blat.proc3829879.chain_125	2	STRG.15416.3	1
scaffold_4	alternate_exon	9909325	9909376	+	asmbl_42963	none	STRG.4757.1	1	STRG.4757.2,blat.proc3829873.chain_1130	2
scaffold_17	retained_intron	1290559	1290651	-	asmbl_18731	none	STRG.19952.6	1	STRG.19952.2	1
scaffold_9	skipped_exon	3197498	3199171	+	asmbl_53862	none	STRG.10927.1,blat.proc3829875.chain_3351	2	STRG.10927.2,Trinity_GG_6041_c0_g1_i3,blat.proc3829875.chain_3350	3
scaffold_18	spliced_intron	2759098	2759324	-	asmbl_19774,asmbl_19776	none	STRG.21125.1,blat.proc3829897.chain_2032,blat.proc3829897.chain_2033	3	STRG.21125.2,Trinity_GG_28855_c0_g1_i1,blat.proc3829897.chain_2034,blat.proc3829897.chain_2035	4
scaffold_5	spliced_intron	4948983	4949120	+	asmbl_43986	none	STRG.5946.3	1	STRG.5946.1,STRG.5946.2	2
scaffold_15	starts_in_intron	12391442	12391442	-	asmbl_15586,asmbl_15587	none	blat.proc3829895.chain_3450,blat.proc3829895.chain_3453	2	STRG.18686.2,STRG.18686.3,STRG.18686.4	3
scaffold_22	ends_in_intron	8286713	8286713	-	asmbl_30239	none	Trinity_GG_31045_c1_g1_i1,blat.proc3829899.chain_2208	2	STRG.25169.1	1
scaffold_9	alt_donor	13278875	13278876	+	asmbl_54472	none	STRG.11615.3	1	STRG.11615.2	1
scaffold_17	alternate_exon	9976728	9991918	+	asmbl_18270	none	blat.proc3829881.chain_1444	1	STRG.20603.2,STRG.20603.3	2
scaffold_6	skipped_exon	3028736	3031447	+	asmbl_46739	none	STRG.7303.2,blat.proc3829873.chain_3423	2	STRG.7303.1,blat.proc3829873.chain_3422	2
scaffold_6	retained_intron	18269465	18269732	+	asmbl_47767	none	STRG.8494.3,Trinity_GG_4678_c0_g1_i1,blat.proc3829875.chain_914	3	STRG.8494.1,STRG.8494.2,blat.proc3829875.chain_916	3
scaffold_2	alternate_exon	2909223	2911270	-	asmbl_22969,asmbl_22970,asmbl_22971	none	STRG.1728.1,STRG.1728.2,blat.proc3829887.chain_1508,blat.proc3829887.chain_1509,blat.proc3829887.chain_1512	5	blat.proc3829887.chain_1510,blat.proc3829887.chain_1511	2
scaffold_22	alternate_exon	231355	231632	-	asmbl_29842	none	STRG.24671.3	1	STRG.24671.2,Trinity_GG_30815_c0_g1_i3,Trinity_GG_30815_c0_g1_i5,blat.proc3829899.chain_1815,blat.proc3829899.chain_1816	5
scaffold_17	spliced_intron	10037074	10037504	-	asmbl_19274	none	STRG.20608.3	1	STRG.20608.4,Trinity_GG_28623_c0_g1_i3,blat.proc3829897.chain_1589	3
scaffold_3	alternate_exon	16780567	16780648	+	asmbl_40594	none	STRG.3931.2	1	STRG.3931.1,blat.proc3829873.chain_264	2
scaffold_10	alt_acceptor	17701303	17701304	+	asmbl_5071	none	blat.proc3829893.chain_1653	1	blat.proc3829893.chain_1652	1
scaffold_3	starts_in_intron	2670152	2670152	+	asmbl_39870	none	Trinity_GG_1686_c0_g1_i1	1	STRG.3038.1,STRG.3038.2,STRG.3038.3,STRG.3038.4	4
scaffold_7	retained_intron	18615646	18615841	-	asmbl_50302	none	STRG.9671.1,blat.proc3829891.chain_1916	2	blat.proc3829891.chain_1918	1
scaffold_2	retained_intron	14360465	14360586	+	asmbl_24952	none	blat.proc3829871.chain_2605	1	STRG.2435.1,STRG.2435.2,blat.proc3829871.chain_2604,blat.proc3829871.chain_2606	4
scaffold_24	retained_intron	3026292	3026335	+	asmbl_32144	none	STRG.26504.1	1	STRG.26504.2	1
scaffold_10	ends_in_intron	533649	533649	-	asmbl_2876	none	Trinity_GG_23614_c1_g1_i1,blat.proc3829893.chain_317	2	STRG.11924.2	1
scaffold_6	skipped_exon	8172579	8172828	-	asmbl_48476,asmbl_48479,asmbl_48480	none	STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3716,blat.proc3829889.chain_3724	4	Trinity_GG_21366_c0_g1_i3,blat.proc3829889.chain_3717	2
scaffold_4	skipped_exon	16802675	16804433	-	asmbl_41966	none	Trinity_GG_19912_c0_g1_i4,blat.proc3829889.chain_1243	2	STRG.5267.1,STRG.5267.2,blat.proc3829889.chain_1242	3
scaffold_23	spliced_intron	362285	362464	-	asmbl_31315,asmbl_31320	none	STRG.25543.3,blat.proc3829899.chain_2656	2	STRG.25543.1,STRG.25543.4,STRG.25543.5,Trinity_GG_31299_c0_g1_i4,blat.proc3829899.chain_2650,blat.proc3829899.chain_2654,blat.proc3829899.chain_2655	7
scaffold_7	spliced_intron	4875256	4875356	+	asmbl_50631,asmbl_50632	none	STRG.8823.1,Trinity_GG_4853_c0_g1_i3,blat.proc3829875.chain_1233,blat.proc3829875.chain_1235	4	blat.proc3829875.chain_1234	1
scaffold_17	retained_exon	8218986	8219038	-	asmbl_19129	none	STRG.20434.2	1	STRG.20434.1,blat.proc3829897.chain_1355	2
scaffold_7	retained_intron	8659761	8660031	-	asmbl_49838	none	blat.proc3829891.chain_1357	1	STRG.9091.2,blat.proc3829891.chain_1356,blat.proc3829891.chain_1358	3
scaffold_24	alt_donor	4836685	4836686	+	asmbl_32218	none	STRG.26593.1,blat.proc3829883.chain_3440	2	blat.proc3829883.chain_3441	1
scaffold_2	alt_acceptor	29975	29976	+	asmbl_24077	none	Trinity_GG_850_c0_g1_i1,blat.proc3829871.chain_1524	2	STRG.1493.1,STRG.1493.3,Trinity_GG_850_c0_g1_i2,Trinity_GG_850_c0_g1_i6,blat.proc3829871.chain_1521,blat.proc3829871.chain_1525,blat.proc3829871.chain_1526,blat.proc3829871.chain_1527	8
scaffold_21	alt_donor	5604563	5604564	+	asmbl_28604	none	STRG.24080.2	1	STRG.24080.1,blat.proc3829883.chain_1226	2
scaffold_10	alt_acceptor	16532558	16532559	+	asmbl_4992,asmbl_4995	none	STRG.13112.1,blat.proc3829877.chain_1619,blat.proc3829877.chain_1622	3	STRG.13112.3	1
scaffold_5	alt_donor	10534510	10534511	-	asmbl_45745	none	STRG.6332.4	1	STRG.6332.3,blat.proc3829889.chain_2349	2
scaffold_2	starts_in_intron	17456339	17456339	+	asmbl_25201	none	STRG.2630.3,blat.proc3829871.chain_2817	2	STRG.2630.1,STRG.2630.2,blat.proc3829871.chain_2818	3
scaffold_5	ends_in_intron	4638446	4638446	-	asmbl_45356	none	blat.proc3829889.chain_1962	1	STRG.5908.1,blat.proc3829889.chain_1964	2
scaffold_9	retained_intron	11815085	11815410	+	asmbl_54367	none	Trinity_GG_6411_c0_g1_i1,blat.proc3829877.chain_263	2	STRG.11485.1,Trinity_GG_6411_c0_g2_i1,blat.proc3829877.chain_265	3
scaffold_3	skipped_exon	13986406	13987046	-	asmbl_39267	none	STRG.3738.2,blat.proc3829887.chain_3522	2	STRG.3738.1,blat.proc3829887.chain_3523	2
scaffold_6	alternate_exon	2527760	2528018	-	asmbl_48089	none	Trinity_GG_21056_c0_g1_i1,blat.proc3829889.chain_3227	2	STRG.7249.1,Trinity_GG_21056_c0_g1_i2,blat.proc3829889.chain_3228	3
scaffold_6	alt_donor	18834831	18834832	+	asmbl_47796,asmbl_47797,asmbl_47798,asmbl_47799	none	STRG.8547.1,blat.proc3829875.chain_887,blat.proc3829875.chain_888,blat.proc3829875.chain_890,blat.proc3829875.chain_891	5	STRG.8547.2,STRG.8547.3	2
scaffold_6	alt_acceptor	3285953	3285954	-	asmbl_48182,asmbl_48184	none	STRG.7327.2,STRG.7327.3,blat.proc3829889.chain_3353	3	STRG.7327.1	1
scaffold_18	alternate_exon	9801058	9802221	-	asmbl_20120	none	STRG.21577.1,blat.proc3829897.chain_2419	2	STRG.21577.2	1
scaffold_8	ends_in_intron	4348348	4348348	+	asmbl_51827	none	Trinity_GG_5531_c0_g1_i2,blat.proc3829875.chain_2435	2	STRG.9913.1,STRG.9913.2,Trinity_GG_5531_c0_g1_i1	3
scaffold_19	retained_intron	11578071	11578294	-	asmbl_21641	none	STRG.22488.1,blat.proc3829897.chain_3179	2	STRG.22488.2,Trinity_GG_29528_c0_g1_i2,blat.proc3829897.chain_3178	3
scaffold_1	alternate_exon	5996766	5997066	-	asmbl_316	none	STRG.403.3,blat.proc3829887.chain_312	2	STRG.403.1,blat.proc3829887.chain_310,blat.proc3829887.chain_311	3
scaffold_26	starts_in_intron	4690886	4690886	-	asmbl_34860,asmbl_34862,asmbl_34863	none	STRG.28179.3,blat.proc3829901.chain_1382,blat.proc3829901.chain_1385	3	STRG.28179.1,STRG.28179.2,blat.proc3829901.chain_1383	3
scaffold_6	spliced_intron	5002265	5002285	+	asmbl_46847	none	STRG.7467.1	1	Trinity_GG_4030_c0_g1_i1	1
scaffold_11	spliced_intron	1305168	1305286	-	asmbl_6402	none	STRG.13304.1,blat.proc3829893.chain_1781	2	Trinity_GG_24473_c0_g1_i2,blat.proc3829893.chain_1779	2
scaffold_21	ends_in_intron	3768753	3768753	-	asmbl_27562,asmbl_27563	none	STRG.23958.3,Trinity_GG_30366_c0_g1_i4,blat.proc3829899.chain_1029	3	STRG.23958.2	1
scaffold_15	starts_in_intron	5139883	5139883	+	asmbl_14131	none	blat.proc3829879.chain_2771	1	STRG.18203.1,blat.proc3829879.chain_2772	2
scaffold_5	skipped_exon	16018055	16018649	-	asmbl_46121	none	blat.proc3829889.chain_2848	1	STRG.6778.1,blat.proc3829889.chain_2849	2
scaffold_18	alt_acceptor	4570742	4570743	+	asmbl_20563	none	STRG.21237.2	1	blat.proc3829881.chain_2153	1
scaffold_22	alt_donor	5818158	5818159	-	asmbl_30053	none	STRG.24914.2	1	STRG.24914.1	1
scaffold_2	alternate_exon	18942933	18950711	+	asmbl_25287,asmbl_25290	none	STRG.2768.1,STRG.2768.3,Trinity_GG_1522_c0_g1_i2	3	Trinity_GG_1522_c0_g1_i6,blat.proc3829871.chain_2879	2
scaffold_4	retained_intron	6299339	6299408	+	asmbl_42718,asmbl_42719,asmbl_42720	none	STRG.4502.1,Trinity_GG_2497_c0_g1_i1,Trinity_GG_2497_c0_g1_i6,Trinity_GG_2497_c0_g1_i8,blat.proc3829873.chain_863,blat.proc3829873.chain_866,blat.proc3829873.chain_868	7	Trinity_GG_2497_c0_g1_i9,blat.proc3829873.chain_865,blat.proc3829873.chain_867,blat.proc3829873.chain_870,blat.proc3829873.chain_871	5
scaffold_13	alt_donor	7014445	7014446	-	asmbl_9793	none	blat.proc3829895.chain_657	1	STRG.15993.2	1
scaffold_15	spliced_intron	15523267	15523823	-	asmbl_15806	none	Trinity_GG_27646_c0_g1_i1,blat.proc3829895.chain_3706	2	STRG.18934.1,Trinity_GG_27646_c0_g1_i2,blat.proc3829895.chain_3705	3
scaffold_14	retained_intron	1714923	1715056	-	asmbl_12891	none	Trinity_GG_26421_c0_g1_i1,blat.proc3829895.chain_1502	2	STRG.16794.1,Trinity_GG_26421_c0_g1_i3,blat.proc3829895.chain_1503	3
scaffold_25	alt_donor	337611	337612	+	asmbl_33318	none	STRG.27057.1	1	STRG.27057.2	1
scaffold_16	skipped_exon	7234374	7235710	-	asmbl_16344,asmbl_16346,asmbl_16350	none	STRG.19382.3,STRG.19382.6,STRG.19382.8	3	STRG.19382.1,STRG.19382.7	2
scaffold_26	starts_in_intron	1890385	1890385	-	asmbl_34695	none	blat.proc3829901.chain_1159	1	STRG.27919.1,blat.proc3829901.chain_1160	2
scaffold_20	retained_intron	10385418	10385493	+	asmbl_26107,asmbl_26108,asmbl_26109,asmbl_26112,asmbl_26114,asmbl_26115	none	STRG.23569.1,STRG.23569.2,STRG.23569.5,Trinity_GG_12979_c0_g1_i2,Trinity_GG_12979_c0_g1_i5,Trinity_GG_12979_c0_g1_i6,blat.proc3829883.chain_590,blat.proc3829883.chain_591,blat.proc3829883.chain_592,blat.proc3829883.chain_594	10	STRG.23569.3	1
scaffold_12	retained_intron	14124654	14124874	-	asmbl_8121	none	Trinity_GG_25557_c1_g1_i1,blat.proc3829893.chain_3712	2	STRG.15232.2	1
scaffold_20	alt_donor	8154371	8154372	-	asmbl_26891,asmbl_26892	none	STRG.23349.2,blat.proc3829899.chain_409	2	STRG.23349.3,blat.proc3829899.chain_411	2
scaffold_16	retained_intron	7910028	7910131	+	asmbl_17159,asmbl_17160	none	Trinity_GG_10619_c0_g1_i1,blat.proc3829881.chain_260,blat.proc3829881.chain_262	3	STRG.19432.1,Trinity_GG_10619_c0_g1_i2,blat.proc3829881.chain_261	3
scaffold_5	alternate_exon	17192251	17192382	+	asmbl_44802	none	STRG.6883.3,blat.proc3829873.chain_2980	2	STRG.6883.1	1
scaffold_26	alt_donor	4818341	4818342	+	asmbl_35454	none	blat.proc3829885.chain_1144	1	STRG.28182.1,blat.proc3829885.chain_1145,blat.proc3829885.chain_1147	3
scaffold_19	ends_in_intron	12425527	12425527	+	asmbl_22604	none	blat.proc3829881.chain_3521	1	STRG.22558.1,blat.proc3829881.chain_3515,blat.proc3829881.chain_3516,blat.proc3829881.chain_3517,blat.proc3829881.chain_3518,blat.proc3829881.chain_3519,blat.proc3829881.chain_3520	7
scaffold_28	spliced_intron	2724883	2725090	+	asmbl_38102,asmbl_38103	none	STRG.29438.1,STRG.29438.2,blat.proc3829885.chain_2562,blat.proc3829885.chain_2563	4	STRG.29438.3,Trinity_GG_16338_c0_g1_i5,blat.proc3829885.chain_2566	3
scaffold_2	alt_acceptor	690917	690918	+	asmbl_24116	none	STRG.1553.4	1	STRG.1553.2	1
scaffold_13	retained_intron	12039370	12039399	+	asmbl_11306	none	STRG.16331.1	1	STRG.16331.2	1
scaffold_7	starts_in_intron	12371823	12371823	+	asmbl_51128	none	Trinity_GG_5186_c1_g1_i1,blat.proc3829875.chain_1806	2	STRG.9325.1,blat.proc3829875.chain_1799,blat.proc3829875.chain_1800,blat.proc3829875.chain_1802,blat.proc3829875.chain_1804	5
scaffold_28	spliced_intron	414159	414254	+	asmbl_37972	none	blat.proc3829885.chain_2403	1	STRG.29239.1,Trinity_GG_16236_c0_g1_i2,blat.proc3829885.chain_2404	3
scaffold_5	alt_acceptor	4686269	4686270	-	asmbl_45373,asmbl_45378	none	blat.proc3829889.chain_2026,blat.proc3829889.chain_2028	2	STRG.5919.1,STRG.5919.4,blat.proc3829889.chain_2027,blat.proc3829889.chain_2029,blat.proc3829889.chain_2030,blat.proc3829889.chain_2032,blat.proc3829889.chain_2033,blat.proc3829889.chain_2035	8
scaffold_11	alt_acceptor	3137958	3137959	-	asmbl_6510	none	blat.proc3829893.chain_1873	1	STRG.13434.1,STRG.13434.3,blat.proc3829893.chain_1872	3
scaffold_24	alternate_exon	7152327	7152372	-	asmbl_33002	none	STRG.26744.2,blat.proc3829901.chain_61	2	STRG.26744.1,blat.proc3829901.chain_60	2
scaffold_5	alt_acceptor	18222899	18222900	+	asmbl_44878,asmbl_44879	none	STRG.6950.2,STRG.6950.5	2	STRG.6950.1,STRG.6950.3,STRG.6950.4,blat.proc3829873.chain_3088,blat.proc3829873.chain_3089	5
scaffold_8	spliced_intron	16501765	16501850	-	asmbl_53406,asmbl_53411,asmbl_53413,asmbl_53414,asmbl_53415,asmbl_53416,asmbl_53419,asmbl_53420,asmbl_53421,asmbl_53422,asmbl_53423,asmbl_53424,asmbl_53425,asmbl_53427,asmbl_53428,asmbl_53429,asmbl_53430	none	STRG.10621.1,STRG.10621.2,STRG.10621.3,STRG.10621.4,STRG.10621.5,Trinity_GG_22960_c0_g1_i18,Trinity_GG_22960_c0_g1_i19,Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2857,blat.proc3829891.chain_2859,blat.proc3829891.chain_2862,blat.proc3829891.chain_2863,blat.proc3829891.chain_2864,blat.proc3829891.chain_2865,blat.proc3829891.chain_2867,blat.proc3829891.chain_2868,blat.proc3829891.chain_2869,blat.proc3829891.chain_2870,blat.proc3829891.chain_2871,blat.proc3829891.chain_2872	24	Trinity_GG_22960_c0_g1_i7,blat.proc3829891.chain_2860,blat.proc3829891.chain_2861	3
scaffold_10	spliced_intron	3928652	3928785	-	asmbl_3155	none	STRG.12230.4,blat.proc3829893.chain_695	2	STRG.12230.2	1
scaffold_19	retained_intron	6669350	6669595	+	asmbl_22228,asmbl_22231	none	STRG.22169.1,STRG.22169.2,blat.proc3829881.chain_3026	3	STRG.22169.4	1
scaffold_21	alt_acceptor	675967	675968	-	asmbl_27364,asmbl_27367	none	STRG.23740.2,blat.proc3829899.chain_807	2	STRG.23740.3,STRG.23740.4,STRG.23740.5	3
scaffold_16	spliced_intron	14553404	14553521	+	asmbl_17488,asmbl_17489,asmbl_17492	none	STRG.19828.1,STRG.19828.2,STRG.19828.3,Trinity_GG_10868_c0_g1_i1,Trinity_GG_10868_c0_g1_i2,blat.proc3829881.chain_687,blat.proc3829881.chain_690	7	Trinity_GG_10868_c0_g1_i3,blat.proc3829881.chain_689	2
scaffold_1	alt_donor	20348973	20348974	+	asmbl_2602	none	STRG.1398.2,blat.proc3829871.chain_1446	2	STRG.1398.3,STRG.1398.4,STRG.1398.6	3
scaffold_5	retained_intron	10196467	10196618	-	asmbl_45706	none	blat.proc3829889.chain_2393	1	STRG.6312.1,blat.proc3829889.chain_2386,blat.proc3829889.chain_2387,blat.proc3829889.chain_2389	4
scaffold_11	retained_intron	13462843	13463131	-	asmbl_7108,asmbl_7109	none	STRG.14196.2,Trinity_GG_24953_c0_g1_i1,Trinity_GG_24953_c0_g1_i2,blat.proc3829893.chain_2631,blat.proc3829893.chain_2634	5	STRG.14196.1,Trinity_GG_24953_c0_g1_i4,blat.proc3829893.chain_2633	3
scaffold_18	alternate_exon	8593261	8593474	+	asmbl_20870	none	STRG.21515.1,blat.proc3829881.chain_2521	2	STRG.21515.2	1
scaffold_1	retained_exon	9516391	9516577	-	asmbl_547	none	STRG.644.2,blat.proc3829887.chain_519	2	STRG.644.1	1
scaffold_13	spliced_intron	8353056	8353540	+	asmbl_11114	none	STRG.16112.3	1	blat.proc3829879.chain_891	1
scaffold_18	alternate_exon	6439065	6439091	-	asmbl_19938	none	STRG.21361.2	1	STRG.21361.1,blat.proc3829897.chain_2227	2
scaffold_7	alt_donor	18338056	18338057	+	asmbl_51408	none	STRG.9651.1,blat.proc3829875.chain_2115	2	STRG.9651.2,blat.proc3829875.chain_2116	2
scaffold_28	spliced_intron	2811349	2811511	-	asmbl_37410	none	blat.proc3829901.chain_2493	1	blat.proc3829901.chain_2492,blat.proc3829901.chain_2495,blat.proc3829901.chain_2496	3
scaffold_15	skipped_exon	4566359	4566986	+	asmbl_14100,asmbl_14104	none	STRG.18173.1,Trinity_GG_9942_c0_g1_i1,Trinity_GG_9942_c0_g1_i3,blat.proc3829879.chain_2742,blat.proc3829879.chain_2744	5	STRG.18173.2,STRG.18173.3,Trinity_GG_9942_c0_g1_i4,Trinity_GG_9942_c0_g1_i5,blat.proc3829879.chain_2743,blat.proc3829879.chain_2745	6
scaffold_17	spliced_intron	14646820	14646843	-	asmbl_19490,asmbl_19491	none	blat.proc3829897.chain_1774,blat.proc3829897.chain_1775	2	STRG.20926.1,Trinity_GG_28726_c0_g1_i2	2
scaffold_21	alt_acceptor	1053818	1053819	-	asmbl_27400,asmbl_27406	none	STRG.23776.1,Trinity_GG_30261_c0_g1_i11,blat.proc3829899.chain_850	3	STRG.23776.2,Trinity_GG_30261_c0_g1_i4,blat.proc3829899.chain_852	3
scaffold_21	starts_in_intron	10965460	10965460	+	asmbl_28909	none	Trinity_GG_13542_c0_g1_i2,blat.proc3829883.chain_1564	2	STRG.24559.1,STRG.24559.3,Trinity_GG_13542_c0_g1_i4,Trinity_GG_13542_c0_g1_i6,blat.proc3829883.chain_1566,blat.proc3829883.chain_1567,blat.proc3829883.chain_1568	7
scaffold_27	alt_donor	2881986	2881987	+	asmbl_36105	none	blat.proc3829885.chain_1819	1	STRG.28753.3,blat.proc3829885.chain_1821	2
scaffold_7	spliced_intron	6655482	6656656	-	asmbl_49744,asmbl_49745	none	STRG.8934.1,blat.proc3829891.chain_1261,blat.proc3829891.chain_1263	3	STRG.8934.2,Trinity_GG_22098_c0_g1_i3,blat.proc3829891.chain_1262	3
scaffold_15	starts_in_intron	1274743	1274743	+	asmbl_13942	none	blat.proc3829879.chain_2532	1	STRG.17930.1,blat.proc3829879.chain_2531	2
scaffold_723	starts_in_intron	2827	2827	-	asmbl_51575	none	blat.proc3829901.chain_3464	1	STRG.30418.1,STRG.30418.2,blat.proc3829901.chain_3461,blat.proc3829901.chain_3463	4
scaffold_23	retained_intron	10938115	10938227	-	asmbl_31893	none	Trinity_GG_31688_c0_g1_i4	1	STRG.26279.3	1
scaffold_3	alt_donor	10304221	10304222	+	asmbl_40217,asmbl_40218	none	STRG.3466.1,STRG.3466.3,Trinity_GG_1968_c0_g2_i1,blat.proc3829871.chain_3656	4	STRG.3466.2	1
scaffold_12	retained_intron	6421547	6421719	-	asmbl_7667	none	blat.proc3829893.chain_3150	1	STRG.14731.1,STRG.14731.2,STRG.14731.3,STRG.14731.4,blat.proc3829893.chain_3149,blat.proc3829893.chain_3151	6
scaffold_13	alt_acceptor	14175210	14175211	+	asmbl_11414,asmbl_11415	none	STRG.16449.1,Trinity_GG_9054_c0_g1_i3,Trinity_GG_9054_c0_g1_i7,blat.proc3829879.chain_1192,blat.proc3829879.chain_1195	5	Trinity_GG_9054_c0_g1_i5,blat.proc3829879.chain_1196	2
scaffold_8	retained_intron	10240030	10240454	+	asmbl_52153	none	Trinity_GG_5715_c1_g1_i1,blat.proc3829875.chain_2795	2	STRG.10282.1,STRG.10282.2,STRG.10282.3,Trinity_GG_5715_c0_g1_i3,blat.proc3829875.chain_2790,blat.proc3829875.chain_2791,blat.proc3829875.chain_2792,blat.proc3829875.chain_2794	8
scaffold_15	retained_intron	13325170	13325463	+	asmbl_14573,asmbl_14574,asmbl_14577,asmbl_14578,asmbl_14579,asmbl_14582	none	Trinity_GG_10264_c0_g1_i4,Trinity_GG_10264_c0_g1_i6,blat.proc3829879.chain_3296,blat.proc3829879.chain_3297,blat.proc3829879.chain_3298,blat.proc3829879.chain_3299,blat.proc3829879.chain_3303,blat.proc3829879.chain_3304	8	STRG.18763.1,Trinity_GG_10264_c0_g1_i2,blat.proc3829879.chain_3300,blat.proc3829879.chain_3301,blat.proc3829879.chain_3302	5
scaffold_19	alt_donor	11523024	11523025	-	asmbl_21629	none	STRG.22476.3	1	STRG.22476.1,STRG.22476.2,STRG.22476.4,blat.proc3829897.chain_3123,blat.proc3829897.chain_3124	5
scaffold_5	retained_exon	12728581	12728691	-	asmbl_45856	none	STRG.6497.1	1	STRG.6497.3	1
scaffold_2	alternate_exon	6517217	6517408	+	asmbl_24499	none	STRG.2022.3	1	STRG.2022.5	1
scaffold_13	retained_intron	2570469	2570603	+	asmbl_10607,asmbl_10608,asmbl_10611,asmbl_10613	none	Trinity_GG_8519_c0_g1_i8,blat.proc3829879.chain_188,blat.proc3829879.chain_190,blat.proc3829879.chain_193,blat.proc3829879.chain_194	5	STRG.15550.1,Trinity_GG_8519_c0_g1_i1,Trinity_GG_8519_c0_g1_i3,blat.proc3829879.chain_189,blat.proc3829879.chain_191,blat.proc3829879.chain_192,blat.proc3829879.chain_195	7
scaffold_27	alternate_exon	971759	973031	+	asmbl_35937	none	Trinity_GG_15816_c0_g1_i2,blat.proc3829885.chain_1619	2	Trinity_GG_15816_c0_g1_i1,blat.proc3829885.chain_1621	2
scaffold_8	alt_donor	44422	44423	-	asmbl_52680	none	STRG.9700.2	1	STRG.9700.1,blat.proc3829891.chain_1974	2
scaffold_6	skipped_exon	12090541	12092555	-	asmbl_48732	none	STRG.7977.1,blat.proc3829891.chain_217	2	STRG.7977.2	1
scaffold_14	alt_donor	13899588	13899589	+	asmbl_12499	none	STRG.17653.4	1	STRG.17653.5	1
scaffold_4	spliced_intron	232495	232641	-	asmbl_41059	none	STRG.4116.2	1	STRG.4116.1,Trinity_GG_19305_c0_g1_i1,blat.proc3829889.chain_229	3
scaffold_26	retained_intron	9514352	9514514	+	asmbl_35760	none	blat.proc3829885.chain_1510	1	STRG.28482.2	1
scaffold_1	alt_donor	14282795	14282796	-	asmbl_890	none	STRG.1023.1,Trinity_GG_17542_c0_g1_i2,blat.proc3829887.chain_892	3	STRG.1023.2,Trinity_GG_17542_c0_g1_i1,blat.proc3829887.chain_893	3
scaffold_12	alt_acceptor	12064818	12064819	+	asmbl_8939	none	STRG.15106.1,blat.proc3829877.chain_3566	2	STRG.15106.2	1
scaffold_24	ends_in_intron	9063949	9063949	+	asmbl_32492,asmbl_32493	none	STRG.26913.2,blat.proc3829885.chain_13	2	STRG.26913.1,blat.proc3829885.chain_14	2
scaffold_3	alternate_exon	11326775	11326820	-	asmbl_39104	none	STRG.3560.2,Trinity_GG_18951_c0_g1_i3,blat.proc3829887.chain_3329	3	STRG.3560.1,Trinity_GG_18951_c0_g1_i2,blat.proc3829887.chain_3328	3
scaffold_4	starts_in_intron	6134849	6134849	-	asmbl_41396	none	blat.proc3829889.chain_600	1	STRG.4484.1	1
scaffold_11	alt_donor	2090208	2090209	+	asmbl_5319,asmbl_5320	none	STRG.13357.1,STRG.13357.2,blat.proc3829877.chain_1859,blat.proc3829877.chain_1860	4	STRG.13357.3,blat.proc3829877.chain_1858	2
scaffold_10	starts_in_intron	1172343	1172343	+	asmbl_4198,asmbl_4199	none	STRG.12000.3,STRG.12000.4,Trinity_GG_6677_c1_g1_i1,blat.proc3829877.chain_713	4	STRG.12000.1,STRG.12000.2	2
scaffold_18	starts_in_intron	3793153	3793153	-	asmbl_19813	none	blat.proc3829897.chain_2079	1	STRG.21185.1,STRG.21185.3,blat.proc3829897.chain_2077,blat.proc3829897.chain_2078,blat.proc3829897.chain_2080,blat.proc3829897.chain_2083	6
scaffold_8	spliced_intron	11270565	11270676	-	asmbl_53139	none	STRG.10329.3	1	STRG.10329.1,blat.proc3829891.chain_2492	2
scaffold_16	retained_exon	7241550	7241633	-	asmbl_16346	none	STRG.19382.6	1	STRG.19382.1,STRG.19382.3,STRG.19382.7,STRG.19382.8	4
scaffold_12	starts_in_intron	6525017	6525017	+	asmbl_8655	none	Trinity_GG_8140_c2_g1_i2,blat.proc3829877.chain_3226	2	STRG.14738.1,STRG.14738.2,Trinity_GG_8140_c2_g1_i1,blat.proc3829877.chain_3227	4
scaffold_11	retained_intron	16649266	16649558	+	asmbl_6148	none	STRG.14343.2,Trinity_GG_7904_c0_g1_i2,blat.proc3829877.chain_2836	3	STRG.14343.1,blat.proc3829877.chain_2835	2
scaffold_13	spliced_intron	2507577	2507742	+	asmbl_10602,asmbl_10603,asmbl_10604,asmbl_10606	none	STRG.15546.1,STRG.15546.2,STRG.15546.3,Trinity_GG_8559_c0_g1_i1,Trinity_GG_8559_c0_g1_i3,Trinity_GG_8559_c0_g1_i5,blat.proc3829879.chain_268,blat.proc3829879.chain_269,blat.proc3829879.chain_271	9	Trinity_GG_8559_c0_g1_i4,blat.proc3829879.chain_270	2
scaffold_5	alternate_exon	6564689	6565036	+	asmbl_44101	none	STRG.6047.3	1	STRG.6047.1,blat.proc3829873.chain_2179,blat.proc3829873.chain_2181	3
scaffold_19	ends_in_intron	6404721	6404721	+	asmbl_22210	none	blat.proc3829881.chain_3067	1	STRG.22156.1,Trinity_GG_12228_c0_g1_i1,Trinity_GG_12228_c0_g1_i3,blat.proc3829881.chain_3068,blat.proc3829881.chain_3070	5
scaffold_2	starts_in_intron	7936545	7936545	+	asmbl_24637	none	Trinity_GG_1149_c0_g2_i1,blat.proc3829871.chain_2106	2	STRG.2090.1,Trinity_GG_1149_c0_g1_i1,Trinity_GG_1149_c0_g1_i4,Trinity_GG_1149_c0_g1_i5,blat.proc3829871.chain_2100,blat.proc3829871.chain_2101,blat.proc3829871.chain_2104	7
scaffold_12	retained_intron	2662471	2662567	+	asmbl_8468	none	STRG.14495.1,blat.proc3829877.chain_2970	2	STRG.14495.3,blat.proc3829877.chain_2969	2
scaffold_20	starts_in_intron	3909656	3909656	+	asmbl_25700	none	blat.proc3829883.chain_167	1	blat.proc3829883.chain_168,blat.proc3829883.chain_170	2
scaffold_21	retained_intron	7507874	7507982	-	asmbl_27854	none	Trinity_GG_30512_c0_g1_i1,blat.proc3829899.chain_1281	2	STRG.24270.1,blat.proc3829899.chain_1282	2
scaffold_4	alt_acceptor	7316724	7316725	-	asmbl_41446	none	STRG.4569.1	1	STRG.4569.2	1
scaffold_4	alt_acceptor	16433810	16433811	-	asmbl_41919,asmbl_41920	none	STRG.5221.1,STRG.5221.2	2	STRG.5221.3	1
scaffold_21	alt_donor	256693	256694	-	asmbl_27313,asmbl_27318,asmbl_27319,asmbl_27321	none	STRG.23718.1,STRG.23718.5,STRG.23718.6,Trinity_GG_30232_c0_g1_i4,blat.proc3829899.chain_783,blat.proc3829899.chain_785,blat.proc3829899.chain_787,blat.proc3829899.chain_790	8	STRG.23718.2,STRG.23718.3,STRG.23718.4,STRG.23718.7,STRG.23718.8,blat.proc3829899.chain_781,blat.proc3829899.chain_782,blat.proc3829899.chain_786,blat.proc3829899.chain_788,blat.proc3829899.chain_791,blat.proc3829899.chain_794	11
scaffold_23	alternate_exon	7684372	7685757	+	asmbl_31006	none	STRG.26063.2,Trinity_GG_14406_c0_g1_i2,Trinity_GG_14406_c2_g1_i1,blat.proc3829883.chain_2980,blat.proc3829883.chain_2983	5	STRG.26063.6	1
scaffold_15	alt_donor	15409801	15409802	+	asmbl_14716,asmbl_14717,asmbl_14718,asmbl_14719,asmbl_14722	none	STRG.18921.2,STRG.18921.3,STRG.18921.5,STRG.18921.7,STRG.18921.8,blat.proc3829879.chain_3514,blat.proc3829879.chain_3515,blat.proc3829879.chain_3517,blat.proc3829879.chain_3518	9	STRG.18921.1,STRG.18921.10,STRG.18921.4,STRG.18921.6,STRG.18921.9	5
scaffold_23	spliced_intron	2016514	2016841	-	asmbl_31400	none	blat.proc3829899.chain_2707	1	STRG.25655.1,blat.proc3829899.chain_2706	2
scaffold_9	retained_exon	13852585	13854152	-	asmbl_55408,asmbl_55409	none	STRG.11644.3,blat.proc3829893.chain_31,blat.proc3829893.chain_33,blat.proc3829893.chain_35	4	blat.proc3829893.chain_32	1
scaffold_16	spliced_intron	8875480	8875517	-	asmbl_16441	none	STRG.19495.2	1	STRG.19495.1,blat.proc3829897.chain_460	2
scaffold_10	retained_intron	928914	929115	-	asmbl_2931	none	STRG.11960.2,Trinity_GG_23668_c0_g1_i2,blat.proc3829893.chain_412	3	STRG.11960.1,blat.proc3829893.chain_411	2
scaffold_9	retained_intron	11877608	11877697	+	asmbl_54374	none	STRG.11501.1,blat.proc3829877.chain_284	2	STRG.11501.2	1
scaffold_10	skipped_exon	1976147	1977391	-	asmbl_3003	none	STRG.12040.2,blat.proc3829893.chain_495	2	STRG.12040.1,STRG.12040.3,blat.proc3829893.chain_494	3
scaffold_5	retained_exon	3591749	3591793	-	asmbl_45311	none	STRG.5822.5	1	STRG.5822.2,STRG.5822.3,STRG.5822.4,blat.proc3829889.chain_1927,blat.proc3829889.chain_1928	5
scaffold_464	retained_intron	3524	3609	+	asmbl_43702	none	STRG.30310.2,blat.proc3829885.chain_3345	2	blat.proc3829885.chain_3344	1
scaffold_2	retained_intron	14559023	14559185	+	asmbl_24985	none	blat.proc3829871.chain_2570	1	STRG.2454.1,STRG.2454.2,STRG.2454.3,STRG.2454.4	4
scaffold_14	spliced_intron	15693741	15693887	-	asmbl_13721	none	STRG.17796.2	1	STRG.17796.1	1
scaffold_8	alternate_exon	4851118	4851149	-	asmbl_52801	none	STRG.9941.2	1	STRG.9941.1,blat.proc3829891.chain_2051,blat.proc3829891.chain_2052,blat.proc3829891.chain_2053	4
scaffold_15	alt_acceptor	15857173	15857174	+	asmbl_14773,asmbl_14775,asmbl_14776	none	STRG.18964.1,STRG.18964.3,STRG.18964.5,Trinity_GG_10383_c0_g1_i7,blat.proc3829879.chain_3538,blat.proc3829879.chain_3540	6	blat.proc3829879.chain_3543,blat.proc3829879.chain_3545	2
scaffold_10	ends_in_intron	14620907	14620907	-	asmbl_3853	none	STRG.12994.2	1	STRG.12994.1,blat.proc3829893.chain_1513	2
scaffold_24	retained_intron	1945924	1946155	-	asmbl_32746	none	STRG.26401.3	1	STRG.26401.4	1
scaffold_5	starts_in_intron	17226147	17226147	+	asmbl_44808,asmbl_44815	none	STRG.6887.3,blat.proc3829873.chain_3031	2	STRG.6887.1,STRG.6887.2,blat.proc3829873.chain_3028,blat.proc3829873.chain_3030,blat.proc3829873.chain_3033	5
scaffold_13	alt_acceptor	6949079	6949080	-	asmbl_9778,asmbl_9779,asmbl_9780	none	STRG.15968.2,STRG.15968.3,STRG.15968.4	3	STRG.15968.5	1
scaffold_10	alternate_exon	15422891	15422954	+	asmbl_4958	none	STRG.13047.1	1	blat.proc3829877.chain_1604	1
scaffold_9	retained_exon	7794215	7794223	+	asmbl_54121,asmbl_54123,asmbl_54128,asmbl_54130	none	blat.proc3829875.chain_3706,blat.proc3829875.chain_3709,blat.proc3829875.chain_3710,blat.proc3829875.chain_3713,blat.proc3829875.chain_3716	5	blat.proc3829875.chain_3714	1
scaffold_11	skipped_exon	9130809	9131505	+	asmbl_5829,asmbl_5830,asmbl_5832	none	STRG.13941.1,STRG.13941.2,blat.proc3829877.chain_2418,blat.proc3829877.chain_2419,blat.proc3829877.chain_2420	5	blat.proc3829877.chain_2417	1
scaffold_9	retained_exon	9734383	9736023	+	asmbl_54227	none	blat.proc3829877.chain_145,blat.proc3829877.chain_151,blat.proc3829877.chain_153	3	STRG.11341.1,blat.proc3829877.chain_146	2
scaffold_1	spliced_intron	11269947	11270054	+	asmbl_2080	none	STRG.744.1,Trinity_GG_459_c0_g1_i1,blat.proc3829871.chain_794	3	STRG.744.3	1
scaffold_4	alt_acceptor	18292734	18292735	+	asmbl_43434,asmbl_43437	none	STRG.5424.1,STRG.5424.5,blat.proc3829873.chain_1664	3	STRG.5424.2,STRG.5424.3,STRG.5424.4,STRG.5424.6,blat.proc3829873.chain_1665,blat.proc3829873.chain_1666	6
scaffold_22	ends_in_intron	9946240	9946240	+	asmbl_29616	none	STRG.25320.1,blat.proc3829883.chain_2319	2	STRG.25320.2	1
scaffold_70	alt_donor	7944	7945	-	asmbl_51541,asmbl_51542	none	STRG.30086.2,Trinity_GG_33885_c0_g1_i1,blat.proc3829901.chain_3187,blat.proc3829901.chain_3188	4	STRG.30086.1	1
scaffold_8	ends_in_intron	12709899	12709899	+	asmbl_52330	none	Trinity_GG_5787_c0_g1_i1,blat.proc3829875.chain_2903	2	STRG.10438.1,Trinity_GG_5787_c0_g1_i2,blat.proc3829875.chain_2904	3
scaffold_6	alt_acceptor	15112563	15112564	+	asmbl_47596	none	STRG.8269.2	1	STRG.8269.1,STRG.8269.3,blat.proc3829875.chain_672	3
scaffold_25	alt_donor	8700438	8700439	-	asmbl_34435	none	STRG.27678.3,blat.proc3829901.chain_953	2	STRG.27678.2,STRG.27678.5,blat.proc3829901.chain_954,blat.proc3829901.chain_957,blat.proc3829901.chain_960	5
scaffold_22	alt_donor	4232450	4232451	-	asmbl_29978,asmbl_29979,asmbl_29980,asmbl_29986,asmbl_29990	none	STRG.24838.2,STRG.24838.3,STRG.24838.4,blat.proc3829899.chain_1976,blat.proc3829899.chain_1977	5	STRG.24838.1	1
scaffold_12	ends_in_intron	5081903	5081903	+	asmbl_8602	none	blat.proc3829877.chain_3149	1	STRG.14667.1,blat.proc3829877.chain_3150,blat.proc3829877.chain_3151	3
scaffold_5	retained_intron	5838814	5839033	-	asmbl_45447	none	blat.proc3829889.chain_2072	1	STRG.5989.1,blat.proc3829889.chain_2071	2
scaffold_28	ends_in_intron	5242759	5242759	+	asmbl_38273,asmbl_38275	none	STRG.29653.3,Trinity_GG_16447_c0_g1_i2,blat.proc3829885.chain_2779	3	STRG.29653.1,Trinity_GG_16447_c0_g1_i3,blat.proc3829885.chain_2778	3
scaffold_6	alternate_exon	10139384	10139434	-	asmbl_48589	none	STRG.7838.3	1	STRG.7838.1,STRG.7838.2,Trinity_GG_21433_c1_g1_i1,blat.proc3829891.chain_79,blat.proc3829891.chain_80	5
scaffold_11	alt_donor	14462946	14462947	-	asmbl_7144	none	STRG.14231.3,blat.proc3829893.chain_2642	2	STRG.14231.2	1
scaffold_17	retained_intron	13048788	13049071	+	asmbl_18431	none	Trinity_GG_11416_c0_g2_i1,blat.proc3829881.chain_1626	2	STRG.20788.1,blat.proc3829881.chain_1625	2
scaffold_1	alternate_exon	18521538	18521816	-	asmbl_1116	none	STRG.1299.1,blat.proc3829887.chain_1158	2	blat.proc3829887.chain_1160	1
scaffold_11	skipped_exon	8330782	8331357	+	asmbl_5716	none	Trinity_GG_7590_c0_g1_i2,blat.proc3829877.chain_2258	2	STRG.13833.1,Trinity_GG_7590_c0_g1_i1,blat.proc3829877.chain_2259	3
scaffold_24	alt_donor	5334387	5334388	-	asmbl_32887,asmbl_32890	none	STRG.26605.1,blat.proc3829899.chain_3680,blat.proc3829899.chain_3681	3	blat.proc3829899.chain_3679	1
scaffold_10	spliced_intron	7282966	7283052	-	asmbl_3456,asmbl_3457	none	STRG.12535.1,STRG.12535.2,Trinity_GG_23983_c0_g1_i1,blat.proc3829893.chain_958,blat.proc3829893.chain_959	5	blat.proc3829893.chain_957	1
scaffold_3	alt_acceptor	16797210	16797211	-	asmbl_39463	none	STRG.3933.2,blat.proc3829887.chain_3701	2	STRG.3933.1	1
scaffold_10	spliced_intron	3510475	3510584	+	asmbl_4331	none	STRG.12181.3	1	STRG.12181.1,blat.proc3829877.chain_826,blat.proc3829877.chain_827,blat.proc3829877.chain_828	4
scaffold_14	ends_in_intron	2464402	2464402	-	asmbl_12938	none	Trinity_GG_26448_c1_g1_i1,blat.proc3829895.chain_1550	2	STRG.16842.1,blat.proc3829895.chain_1549	2
scaffold_4	alt_acceptor	5230743	5230744	-	asmbl_41314	none	STRG.4417.2	1	STRG.4417.1,STRG.4417.3,blat.proc3829889.chain_436,blat.proc3829889.chain_439	4
scaffold_1	alternate_exon	20732958	20733011	-	asmbl_1197	none	STRG.1416.3	1	STRG.1416.2,blat.proc3829887.chain_1294	2
scaffold_17	retained_exon	5097033	5097177	+	asmbl_17939	none	STRG.20226.2,blat.proc3829881.chain_978	2	STRG.20226.3	1
scaffold_14	starts_in_intron	12132626	12132626	-	asmbl_13536	none	STRG.17531.1,blat.proc3829895.chain_2254	2	STRG.17531.2,blat.proc3829895.chain_2255	2
scaffold_20	retained_exon	7862451	7862542	-	asmbl_26854,asmbl_26859	none	STRG.23322.1,blat.proc3829899.chain_377,blat.proc3829899.chain_378	3	STRG.23322.2,blat.proc3829899.chain_375	2
scaffold_7	ends_in_intron	17681157	17681157	-	asmbl_50253	none	blat.proc3829891.chain_1843	1	STRG.9606.1,blat.proc3829891.chain_1844,blat.proc3829891.chain_1845	3
scaffold_12	spliced_intron	9152051	9152228	+	asmbl_8820,asmbl_8821	none	STRG.14908.1,STRG.14908.2,blat.proc3829877.chain_3438,blat.proc3829877.chain_3440	4	blat.proc3829877.chain_3441	1
scaffold_23	alternate_exon	7910175	7915713	-	asmbl_31775	none	STRG.26078.4,blat.proc3829899.chain_3208	2	STRG.26078.5,Trinity_GG_31608_c1_g1_i1,blat.proc3829899.chain_3210	3
scaffold_8	skipped_exon	11741924	11743764	-	asmbl_53158	none	STRG.10368.1,blat.proc3829891.chain_2442	2	STRG.10368.2,blat.proc3829891.chain_2441	2
scaffold_26	spliced_intron	10097149	10097583	-	asmbl_35083	none	STRG.28512.2	1	Trinity_GG_32937_c0_g1_i3,blat.proc3829901.chain_1637,blat.proc3829901.chain_1639	3
scaffold_27	alternate_exon	1778936	1778987	-	asmbl_36739	none	STRG.28644.1,blat.proc3829901.chain_1778	2	STRG.28644.2,blat.proc3829901.chain_1779	2
scaffold_43	alt_donor	874	875	-	asmbl_43671	none	STRG.30025.4	1	STRG.30025.1,STRG.30025.3,STRG.30025.5	3
scaffold_10	retained_intron	4659	4886	+	asmbl_4126	none	STRG.11886.2,Trinity_GG_6622_c0_g1_i1,blat.proc3829877.chain_612	3	STRG.11886.1,blat.proc3829877.chain_613	2
scaffold_20	retained_intron	11942421	11942684	-	asmbl_27131	none	blat.proc3829899.chain_682	1	STRG.23682.1,STRG.23682.2,blat.proc3829899.chain_680,blat.proc3829899.chain_681	4
scaffold_3	alt_donor	1551266	1551267	-	asmbl_38677,asmbl_38679	none	STRG.2981.1,STRG.2981.2,blat.proc3829887.chain_2716	3	blat.proc3829887.chain_2715	1
scaffold_3	starts_in_intron	10608560	10608560	-	asmbl_39056	none	blat.proc3829887.chain_3204	1	STRG.3497.1,STRG.3497.2,STRG.3497.3,blat.proc3829887.chain_3201,blat.proc3829887.chain_3202,blat.proc3829887.chain_3203	6
scaffold_4	alt_donor	10982397	10982398	+	asmbl_43028	none	STRG.4820.1,blat.proc3829873.chain_1180	2	STRG.4820.2	1
scaffold_28	alternate_exon	2198363	2198412	+	asmbl_38036	none	STRG.29368.2,Trinity_GG_16268_c0_g1_i2,blat.proc3829885.chain_2446	3	STRG.29368.3	1
scaffold_6	alt_donor	15112436	15112437	+	asmbl_47596	none	STRG.8269.2	1	STRG.8269.1,STRG.8269.3,blat.proc3829875.chain_672	3
scaffold_1	alternate_exon	5996905	5997066	-	asmbl_318	none	blat.proc3829887.chain_308	1	STRG.403.1,STRG.403.2,blat.proc3829887.chain_309,blat.proc3829887.chain_310,blat.proc3829887.chain_311	5
scaffold_14	alternate_exon	14764603	14764630	+	asmbl_12547	none	STRG.17718.1,Trinity_GG_9717_c0_g1_i1,blat.proc3829879.chain_2357	3	STRG.17718.2,Trinity_GG_9717_c0_g1_i2,blat.proc3829879.chain_2356	3
scaffold_22	alternate_exon	7884163	7884808	-	asmbl_30195	none	blat.proc3829899.chain_2210	1	blat.proc3829899.chain_2209	1
scaffold_2	starts_in_intron	14343078	14343078	-	asmbl_23611	none	blat.proc3829887.chain_2306	1	STRG.2433.1,blat.proc3829887.chain_2305	2
scaffold_6	retained_exon	12520880	12520945	-	asmbl_48750,asmbl_48752	none	STRG.8002.4,blat.proc3829891.chain_301	2	STRG.8002.3	1
scaffold_26	skipped_exon	10120348	10122046	-	asmbl_35092	none	Trinity_GG_32936_c0_g1_i13,blat.proc3829901.chain_1636	2	STRG.28511.1,STRG.28511.2,Trinity_GG_32936_c0_g1_i11,Trinity_GG_32936_c0_g1_i3,Trinity_GG_32936_c0_g1_i5,blat.proc3829901.chain_1633,blat.proc3829901.chain_1634,blat.proc3829901.chain_1635	8
scaffold_17	starts_in_intron	7849692	7849692	+	asmbl_18053	none	blat.proc3829881.chain_1176	1	STRG.20399.1,STRG.20399.2,blat.proc3829881.chain_1175	3
scaffold_11	starts_in_intron	13551236	13551236	-	asmbl_7114	none	blat.proc3829893.chain_2649	1	STRG.14200.1,blat.proc3829893.chain_2648,blat.proc3829893.chain_2650,blat.proc3829893.chain_2651	4
scaffold_2	alt_donor	7895023	7895024	+	asmbl_24626,asmbl_24627,asmbl_24628	none	STRG.2086.2,STRG.2086.3,blat.proc3829871.chain_2193,blat.proc3829871.chain_2194,blat.proc3829871.chain_2195,blat.proc3829871.chain_2199	6	Trinity_GG_1187_c0_g1_i17,blat.proc3829871.chain_2198	2
scaffold_8	alt_donor	4194678	4194679	-	asmbl_52751	none	STRG.9887.2	1	blat.proc3829891.chain_2037	1
scaffold_9	retained_intron	5552129	5552354	-	asmbl_54976	none	blat.proc3829891.chain_3228	1	STRG.11124.3	1
scaffold_10	alt_donor	7275847	7275848	+	asmbl_4556	none	blat.proc3829877.chain_1104	1	STRG.12531.1,STRG.12531.2,STRG.12531.3,blat.proc3829877.chain_1100,blat.proc3829877.chain_1101,blat.proc3829877.chain_1103,blat.proc3829877.chain_1105	7
scaffold_10	retained_intron	6757359	6757457	-	asmbl_3418	none	blat.proc3829893.chain_985	1	STRG.12497.1,blat.proc3829893.chain_986	2
scaffold_27	ends_in_intron	4733261	4733261	+	asmbl_36267	none	STRG.28889.1,Trinity_GG_16016_c0_g1_i4,Trinity_GG_16016_c0_g1_i7,blat.proc3829885.chain_2053,blat.proc3829885.chain_2056	5	STRG.28889.3	1
scaffold_7	retained_exon	5097305	5097364	+	asmbl_50665	none	STRG.8843.1,blat.proc3829875.chain_1257	2	STRG.8843.2,blat.proc3829875.chain_1256	2
scaffold_26	retained_exon	1995448	1995532	+	asmbl_35260	none	STRG.27926.1	1	STRG.27926.2	1
scaffold_17	alt_acceptor	8317805	8317806	+	asmbl_18099	none	blat.proc3829881.chain_1251	1	STRG.20443.2,STRG.20443.3,blat.proc3829881.chain_1250	3
scaffold_8	starts_in_intron	10862577	10862577	-	asmbl_53122	none	Trinity_GG_22766_c1_g1_i1,blat.proc3829891.chain_2484	2	STRG.10304.1,STRG.10304.2,STRG.10304.3,blat.proc3829891.chain_2485	4
scaffold_17	starts_in_intron	9179971	9179971	+	asmbl_18194	none	Trinity_GG_11241_c0_g1_i2,blat.proc3829881.chain_1314	2	STRG.20528.1,blat.proc3829881.chain_1316	2
scaffold_21	spliced_intron	10469247	10469271	+	asmbl_28883	none	STRG.24495.2	1	STRG.24495.1	1
scaffold_5	alt_acceptor	16792930	16792931	-	asmbl_46155	none	STRG.6861.2,blat.proc3829889.chain_2904	2	STRG.6861.3	1
scaffold_12	alternate_exon	12447921	12452455	+	asmbl_8969,asmbl_8971,asmbl_8972	none	STRG.15137.1,STRG.15137.2,STRG.15137.4,blat.proc3829877.chain_3559,blat.proc3829877.chain_3560	5	STRG.15137.3,blat.proc3829877.chain_3558	2
scaffold_3	starts_in_intron	16932037	16932037	-	asmbl_39468	none	blat.proc3829889.chain_14	1	STRG.3938.1,blat.proc3829889.chain_11,blat.proc3829889.chain_12	3
scaffold_5	starts_in_intron	1250420	1250420	-	asmbl_45237,asmbl_45238	none	blat.proc3829889.chain_1781,blat.proc3829889.chain_1785	2	STRG.5683.1,blat.proc3829889.chain_1782,blat.proc3829889.chain_1783,blat.proc3829889.chain_1784	4
scaffold_20	alternate_exon	11776603	11776965	-	asmbl_27123	none	STRG.23671.2,Trinity_GG_30187_c0_g1_i3,blat.proc3829899.chain_671	3	STRG.23671.1,Trinity_GG_30187_c0_g1_i2,blat.proc3829899.chain_670	3
scaffold_10	alt_donor	1073612	1073613	-	asmbl_2957	none	STRG.11982.2	1	STRG.11982.1	1
scaffold_17	skipped_exon	5096466	5097292	+	asmbl_17940	none	STRG.20226.3	1	STRG.20226.2,blat.proc3829881.chain_978	2
scaffold_22	retained_exon	7249211	7249237	-	asmbl_30151	none	STRG.25046.1	1	STRG.25046.2	1
scaffold_26	spliced_intron	9772322	9772792	+	asmbl_35785,asmbl_35786,asmbl_35790	none	STRG.28501.10,STRG.28501.5,blat.proc3829885.chain_1434	3	STRG.28501.2,STRG.28501.3,STRG.28501.4,STRG.28501.9,Trinity_GG_15718_c0_g2_i1,blat.proc3829885.chain_1433,blat.proc3829885.chain_1436,blat.proc3829885.chain_1438	8
scaffold_25	spliced_intron	8476570	8476690	+	asmbl_33731,asmbl_33734	none	STRG.27664.1,blat.proc3829885.chain_661,blat.proc3829885.chain_662	3	Trinity_GG_15254_c0_g1_i4,blat.proc3829885.chain_664	2
scaffold_26	spliced_intron	6721964	6722078	+	asmbl_35635	none	STRG.28354.3	1	STRG.28354.2,blat.proc3829885.chain_1285	2
scaffold_8	alt_acceptor	9695267	9695268	+	asmbl_52082,asmbl_52083	none	STRG.10208.1,STRG.10208.3,blat.proc3829875.chain_2707,blat.proc3829875.chain_2708	4	STRG.10208.2	1
scaffold_13	alternate_exon	15637557	15638003	+	asmbl_11501	none	STRG.16594.2	1	STRG.16594.1,blat.proc3829879.chain_1348	2
scaffold_9	ends_in_intron	3666117	3666117	+	asmbl_53889	none	STRG.10962.2	1	STRG.10962.3,blat.proc3829875.chain_3441	2
scaffold_17	spliced_intron	9531820	9532391	+	asmbl_18229,asmbl_18230,asmbl_18232	none	STRG.20566.1,STRG.20566.2,Trinity_GG_11250_c0_g1_i4,Trinity_GG_11250_c0_g1_i7,blat.proc3829881.chain_1350,blat.proc3829881.chain_1352	6	blat.proc3829881.chain_1349,blat.proc3829881.chain_1353	2
scaffold_25	alt_acceptor	2089169	2089170	-	asmbl_34045	none	STRG.27196.2	1	STRG.27196.1,blat.proc3829901.chain_540	2
scaffold_3	spliced_intron	10276182	10276586	+	asmbl_40206,asmbl_40208,asmbl_40212	none	STRG.3461.1,STRG.3461.3,blat.proc3829871.chain_3621,blat.proc3829871.chain_3622,blat.proc3829871.chain_3623	5	Trinity_GG_1953_c0_g1_i6,blat.proc3829871.chain_3624,blat.proc3829871.chain_3626	3
scaffold_20	starts_in_intron	11144437	11144437	+	asmbl_26174	none	Trinity_GG_13048_c0_g1_i2,blat.proc3829883.chain_695	2	STRG.23625.1,STRG.23625.2,Trinity_GG_13048_c0_g1_i3,Trinity_GG_13048_c0_g1_i4,Trinity_GG_13048_c0_g1_i5,blat.proc3829883.chain_696,blat.proc3829883.chain_697,blat.proc3829883.chain_698	8
scaffold_23	retained_intron	362285	362464	-	asmbl_31310,asmbl_31311,asmbl_31313,asmbl_31314,asmbl_31317	none	STRG.25543.1,STRG.25543.4,STRG.25543.5,Trinity_GG_31299_c0_g1_i4,blat.proc3829899.chain_2650,blat.proc3829899.chain_2654,blat.proc3829899.chain_2655	7	STRG.25543.3,blat.proc3829899.chain_2656	2
scaffold_18	ends_in_intron	592524	592524	+	asmbl_20329	none	blat.proc3829881.chain_1858	1	STRG.20987.1	1
scaffold_15	alternate_exon	15857985	15859353	+	asmbl_14772	none	STRG.18964.2,Trinity_GG_10383_c0_g1_i8,blat.proc3829879.chain_3544	3	blat.proc3829879.chain_3543	1
scaffold_23	spliced_intron	10331164	10331283	+	asmbl_31143	none	STRG.26228.2	1	Trinity_GG_14478_c0_g1_i1	1
scaffold_14	starts_in_intron	9994404	9994404	+	asmbl_12288,asmbl_12291	none	STRG.17352.3,blat.proc3829879.chain_2081,blat.proc3829879.chain_2083	3	blat.proc3829879.chain_2080	1
scaffold_723	alternate_exon	2439	2558	-	asmbl_51573	none	blat.proc3829901.chain_3465	1	STRG.30418.2,blat.proc3829901.chain_3461	2
scaffold_21	spliced_intron	3112262	3112397	-	asmbl_27533,asmbl_27535	none	STRG.23925.1,blat.proc3829899.chain_984,blat.proc3829899.chain_986	3	blat.proc3829899.chain_983,blat.proc3829899.chain_985	2
scaffold_3	starts_in_intron	13425281	13425281	-	asmbl_39214	none	blat.proc3829887.chain_3425	1	STRG.3690.5	1
scaffold_7	alternate_exon	13867076	13867290	-	asmbl_50139,asmbl_50140	none	blat.proc3829891.chain_1673,blat.proc3829891.chain_1674	2	STRG.9469.1	1
scaffold_15	alternate_exon	5456690	5456802	-	asmbl_15217	none	STRG.18219.3,Trinity_GG_27252_c0_g1_i2,blat.proc3829895.chain_2957	3	STRG.18219.1,STRG.18219.2,Trinity_GG_27252_c0_g1_i10,blat.proc3829895.chain_2953,blat.proc3829895.chain_2954,blat.proc3829895.chain_2955,blat.proc3829895.chain_2956	7
scaffold_6	alt_acceptor	9846508	9846509	+	asmbl_47180	none	STRG.7819.1,blat.proc3829875.chain_139	2	STRG.7819.2	1
scaffold_15	ends_in_intron	5143810	5143810	+	asmbl_14132	none	STRG.18208.2,blat.proc3829879.chain_2837	2	STRG.18208.1,blat.proc3829879.chain_2836,blat.proc3829879.chain_2838,blat.proc3829879.chain_2839	4
scaffold_21	starts_in_intron	10119095	10119095	+	asmbl_28872	none	Trinity_GG_13526_c0_g1_i1,blat.proc3829883.chain_1539	2	STRG.24462.1,blat.proc3829883.chain_1540	2
scaffold_6	spliced_intron	7516477	7516579	-	asmbl_48435	none	STRG.7647.1,blat.proc3829889.chain_3684	2	STRG.7647.2,blat.proc3829889.chain_3681	2
scaffold_13	alternate_exon	2334117	2335206	+	asmbl_10564,asmbl_10569,asmbl_10571	none	STRG.15543.2,STRG.15543.5,STRG.15543.8,Trinity_GG_8511_c1_g1_i3,blat.proc3829879.chain_166,blat.proc3829879.chain_174,blat.proc3829879.chain_175	7	STRG.15543.3,STRG.15543.6,STRG.15543.7	3
scaffold_13	retained_intron	7655940	7656087	+	asmbl_11048	none	blat.proc3829879.chain_780	1	STRG.16039.1,blat.proc3829879.chain_775,blat.proc3829879.chain_778,blat.proc3829879.chain_779,blat.proc3829879.chain_781	5
scaffold_5	retained_intron	10854006	10854093	+	asmbl_44370,asmbl_44373,asmbl_44374	none	STRG.6350.4,blat.proc3829873.chain_2511,blat.proc3829873.chain_2516	3	STRG.6350.1,STRG.6350.3,blat.proc3829873.chain_2512,blat.proc3829873.chain_2513,blat.proc3829873.chain_2515	5
scaffold_9	retained_intron	15394570	15395108	+	asmbl_54545	none	STRG.11731.3,Trinity_GG_6522_c0_g1_i1,blat.proc3829877.chain_442	3	STRG.11731.1,STRG.11731.2,Trinity_GG_6522_c0_g1_i4,Trinity_GG_6522_c0_g1_i5,Trinity_GG_6522_c0_g1_i6,blat.proc3829877.chain_441,blat.proc3829877.chain_443,blat.proc3829877.chain_444	8
scaffold_7	alt_donor	15249050	15249051	+	asmbl_51300,asmbl_51302,asmbl_51303,asmbl_51304	none	STRG.9529.1,STRG.9529.2,STRG.9529.3,blat.proc3829875.chain_2038,blat.proc3829875.chain_2039,blat.proc3829875.chain_2040	6	blat.proc3829875.chain_2041	1
scaffold_6	retained_intron	11499265	11499368	+	asmbl_47275	none	Trinity_GG_4344_c0_g1_i1,blat.proc3829875.chain_309	2	STRG.7940.1,Trinity_GG_4344_c0_g2_i1,Trinity_GG_4344_c0_g2_i3,blat.proc3829875.chain_310,blat.proc3829875.chain_312	5
scaffold_4	alternate_exon	13763508	13763615	-	asmbl_41748	none	STRG.4997.1,blat.proc3829889.chain_1050	2	STRG.4997.2,blat.proc3829889.chain_1048	2
scaffold_8	starts_in_intron	6272964	6272964	+	asmbl_51942	none	Trinity_GG_5579_c0_g1_i1,blat.proc3829875.chain_2517	2	STRG.10021.1,blat.proc3829875.chain_2518	2
scaffold_21	retained_intron	8086347	8086431	-	asmbl_27908	none	STRG.24331.1,blat.proc3829899.chain_1420	2	STRG.24331.2,blat.proc3829899.chain_1419	2
scaffold_1	alt_acceptor	14615369	14615370	+	asmbl_2384	none	STRG.1059.2	1	STRG.1059.1,blat.proc3829871.chain_1068	2
scaffold_3	alt_donor	14495452	14495453	-	asmbl_39326	none	STRG.3788.1,Trinity_GG_19109_c0_g2_i1	2	Trinity_GG_19109_c0_g1_i1,Trinity_GG_19109_c0_g1_i2,blat.proc3829887.chain_3589,blat.proc3829887.chain_3590	4
scaffold_2	starts_in_intron	16088796	16088796	-	asmbl_23683	none	blat.proc3829887.chain_2400	1	STRG.2559.1,blat.proc3829887.chain_2398,blat.proc3829887.chain_2399,blat.proc3829887.chain_2401	4
scaffold_26	starts_in_intron	4332457	4332457	-	asmbl_34817	none	STRG.28149.3	1	STRG.28149.1,STRG.28149.2,STRG.28149.4	3
scaffold_18	starts_in_intron	7549580	7549580	-	asmbl_19991	none	blat.proc3829897.chain_2297	1	STRG.21448.1,STRG.21448.2,STRG.21448.3,blat.proc3829897.chain_2296	4
scaffold_7	skipped_exon	5928121	5929865	+	asmbl_50714	none	Trinity_GG_4833_c0_g1_i1,blat.proc3829875.chain_1203	2	blat.proc3829875.chain_1202	1
scaffold_12	retained_exon	7650909	7650974	+	asmbl_8742	none	STRG.14833.3	1	STRG.14833.1,Trinity_GG_8196_c0_g1_i2,blat.proc3829877.chain_3325	3
scaffold_14	alternate_exon	8401692	8402052	-	asmbl_13284,asmbl_13289	none	STRG.17262.2,blat.proc3829895.chain_1979,blat.proc3829895.chain_1981	3	STRG.17262.1,STRG.17262.3,blat.proc3829895.chain_1982	3
scaffold_13	alternate_exon	12869132	12869276	-	asmbl_10109	none	STRG.16367.2	1	STRG.16367.1	1
scaffold_12	skipped_exon	7617691	7618187	-	asmbl_7732,asmbl_7734,asmbl_7735	none	STRG.14826.2,STRG.14826.3,STRG.14826.6	3	STRG.14826.1,STRG.14826.4,STRG.14826.5,blat.proc3829893.chain_3214,blat.proc3829893.chain_3215	5
scaffold_13	retained_intron	3529936	3530025	+	asmbl_10688	none	blat.proc3829879.chain_365	1	STRG.15655.1,STRG.15655.2,blat.proc3829879.chain_361,blat.proc3829879.chain_362,blat.proc3829879.chain_363,blat.proc3829879.chain_364	6
scaffold_6	alt_acceptor	12003191	12003192	+	asmbl_47304	none	STRG.7963.3	1	STRG.7963.1,STRG.7963.2	2
scaffold_14	alt_acceptor	1070948	1070949	+	asmbl_11763,asmbl_11766,asmbl_11767,asmbl_11768,asmbl_11771,asmbl_11772	none	STRG.16754.1,STRG.16754.2,STRG.16754.5,Trinity_GG_9205_c0_g1_i2,blat.proc3829879.chain_1436,blat.proc3829879.chain_1438,blat.proc3829879.chain_1441	7	STRG.16754.3,STRG.16754.4,blat.proc3829879.chain_1439,blat.proc3829879.chain_1440,blat.proc3829879.chain_1442	5
scaffold_25	alternate_exon	666371	666409	+	asmbl_33340	none	STRG.27104.1	1	STRG.27104.2	1
scaffold_11	spliced_intron	10145073	10145116	-	asmbl_6962,asmbl_6963	none	STRG.14016.1,STRG.14016.2	2	Trinity_GG_24849_c0_g1_i1	1
scaffold_6	spliced_intron	1497143	1498676	+	asmbl_46665	none	STRG.7184.2,blat.proc3829873.chain_3356	2	STRG.7184.1,Trinity_GG_3973_c0_g1_i1,Trinity_GG_3973_c1_g1_i2,blat.proc3829873.chain_3354,blat.proc3829873.chain_3355	5
scaffold_9	starts_in_intron	9812181	9812181	+	asmbl_54243	none	blat.proc3829877.chain_72	1	blat.proc3829877.chain_74	1
scaffold_14	starts_in_intron	13907721	13907721	+	asmbl_12503	none	Trinity_GG_9706_c0_g1_i1,blat.proc3829879.chain_2332	2	STRG.17656.3,blat.proc3829879.chain_2333	2
scaffold_22	alt_acceptor	7573294	7573295	+	asmbl_29486	none	STRG.25078.1,blat.proc3829883.chain_2143	2	STRG.25078.2,blat.proc3829883.chain_2144	2
scaffold_23	retained_intron	8104276	8104414	+	asmbl_31057	none	STRG.26106.3	1	STRG.26106.1,STRG.26106.2	2
scaffold_28	spliced_intron	8276719	8276800	+	asmbl_38432	none	STRG.29876.1	1	Trinity_GG_16551_c0_g1_i2,blat.proc3829885.chain_2978	2
scaffold_22	ends_in_intron	4354729	4354729	+	asmbl_29280	none	blat.proc3829883.chain_1881	1	STRG.24841.1,STRG.24841.2,blat.proc3829883.chain_1877,blat.proc3829883.chain_1879,blat.proc3829883.chain_1882	5
scaffold_22	spliced_intron	6513438	6513461	+	asmbl_29406	none	STRG.24973.2	1	STRG.24973.1,Trinity_GG_13814_c0_g1_i2,blat.proc3829883.chain_2029	3
scaffold_8	alt_acceptor	9876489	9876490	+	asmbl_52113	none	STRG.10224.3,blat.proc3829875.chain_2736	2	STRG.10224.1,STRG.10224.2,blat.proc3829875.chain_2735,blat.proc3829875.chain_2737	4
scaffold_7	retained_intron	8507767	8510079	+	asmbl_50885,asmbl_50891	none	STRG.9068.2,blat.proc3829875.chain_1530	2	STRG.9068.1,blat.proc3829875.chain_1527	2
scaffold_2	retained_intron	15455311	15455409	+	asmbl_25068	none	blat.proc3829871.chain_2684	1	STRG.2500.1,STRG.2500.2,blat.proc3829871.chain_2679,blat.proc3829871.chain_2680,blat.proc3829871.chain_2681,blat.proc3829871.chain_2682,blat.proc3829871.chain_2683,blat.proc3829871.chain_2685	8
scaffold_20	alternate_exon	4180770	4180902	+	asmbl_25713	none	STRG.23092.1,blat.proc3829883.chain_208	2	STRG.23092.2,Trinity_GG_12734_c0_g1_i1	2
scaffold_21	spliced_intron	5170315	5170410	-	asmbl_27646,asmbl_27649,asmbl_27650,asmbl_27651	none	STRG.24038.1,blat.proc3829899.chain_1128,blat.proc3829899.chain_1129,blat.proc3829899.chain_1132,blat.proc3829899.chain_1134	5	Trinity_GG_30430_c0_g1_i8,blat.proc3829899.chain_1130,blat.proc3829899.chain_1131	3
scaffold_20	alternate_exon	4181812	4181944	+	asmbl_25714	none	STRG.23092.2,Trinity_GG_12734_c0_g1_i1	2	STRG.23092.1,blat.proc3829883.chain_208	2
scaffold_1	ends_in_intron	18524215	18524215	-	asmbl_1119	none	blat.proc3829887.chain_1160	1	STRG.1299.2,blat.proc3829887.chain_1159	2
scaffold_10	ends_in_intron	16532934	16532934	+	asmbl_4997	none	STRG.13112.3	1	STRG.13112.1,blat.proc3829877.chain_1619,blat.proc3829877.chain_1622	3
scaffold_6	retained_intron	92644	92783	+	asmbl_46585	none	STRG.7060.2,Trinity_GG_3889_c0_g1_i2,blat.proc3829873.chain_3206	3	STRG.7060.1,Trinity_GG_3889_c0_g1_i1,blat.proc3829873.chain_3207	3
scaffold_13	alternate_exon	11600010	11603325	+	asmbl_11274,asmbl_11276,asmbl_11277	none	STRG.16295.1,blat.proc3829879.chain_1014,blat.proc3829879.chain_1018,blat.proc3829879.chain_1019	4	STRG.16295.4,blat.proc3829879.chain_1022	2
scaffold_24	spliced_intron	6223967	6224182	-	asmbl_32933,asmbl_32937,asmbl_32938,asmbl_32939,asmbl_32940	none	STRG.26664.1,blat.proc3829899.chain_3686,blat.proc3829899.chain_3690,blat.proc3829899.chain_3693,blat.proc3829899.chain_3694,blat.proc3829899.chain_3696	6	Trinity_GG_31899_c0_g1_i10,blat.proc3829899.chain_3687,blat.proc3829899.chain_3689,blat.proc3829899.chain_3691,blat.proc3829899.chain_3695	5
scaffold_27	retained_exon	6195097	6195177	+	asmbl_36334	none	STRG.28993.5	1	STRG.28993.1,STRG.28993.4	2
scaffold_24	alt_acceptor	1517799	1517800	+	asmbl_32089	none	STRG.26383.2	1	STRG.26383.1,blat.proc3829899.chain_3429	2
scaffold_14	alternate_exon	5889816	5889893	-	asmbl_13081	none	STRG.17035.1	1	STRG.17035.2,blat.proc3829895.chain_1715	2
scaffold_9	alt_donor	5530735	5530736	+	asmbl_54035	none	STRG.11121.4,Trinity_GG_6215_c0_g1_i2,blat.proc3829875.chain_3648	3	STRG.11121.1,STRG.11121.2,STRG.11121.3,Trinity_GG_6215_c0_g1_i4,Trinity_GG_6215_c0_g1_i5,blat.proc3829875.chain_3647	6
scaffold_26	alt_acceptor	6319314	6319315	-	asmbl_34943,asmbl_34944	none	STRG.28312.1,STRG.28312.3,blat.proc3829901.chain_1454,blat.proc3829901.chain_1455	4	STRG.28312.2	1
scaffold_12	retained_intron	15425487	15425594	-	asmbl_8219	none	blat.proc3829895.chain_69	1	STRG.15330.1,blat.proc3829895.chain_68,blat.proc3829895.chain_70	3
scaffold_11	alternate_exon	3495172	3498441	+	asmbl_5399	none	STRG.13472.1	1	STRG.13472.4	1
scaffold_6	retained_intron	7173897	7174059	+	asmbl_46994	none	blat.proc3829873.chain_3737	1	STRG.7621.1,STRG.7621.2,STRG.7621.3,STRG.7621.4,blat.proc3829873.chain_3736,blat.proc3829873.chain_3739	6
scaffold_3	alt_donor	4882488	4882489	-	asmbl_38775	none	STRG.3177.1,blat.proc3829887.chain_2891	2	STRG.3177.2	1
scaffold_20	alternate_exon	6974887	6974932	+	asmbl_25842	none	STRG.23248.1	1	STRG.23248.2,blat.proc3829883.chain_383	2
scaffold_13	retained_intron	5106775	5107098	-	asmbl_9632	none	STRG.15798.2,blat.proc3829895.chain_544	2	STRG.15798.1,blat.proc3829895.chain_545	2
scaffold_8	alt_acceptor	3489246	3489247	+	asmbl_51760	none	STRG.9839.2	1	STRG.9839.1,STRG.9839.3,blat.proc3829875.chain_2330,blat.proc3829875.chain_2331	4
scaffold_2	ends_in_intron	13962650	13962650	-	asmbl_23566	none	Trinity_GG_18325_c1_g1_i1,blat.proc3829887.chain_2239	2	STRG.2384.1,STRG.2384.2,blat.proc3829887.chain_2237,blat.proc3829887.chain_2238	4
scaffold_15	alternate_exon	13680158	13680312	-	asmbl_15671	none	STRG.18788.1,blat.proc3829895.chain_3526	2	STRG.18788.2	1
scaffold_1	alternate_exon	5201910	5201973	+	asmbl_1705,asmbl_1706,asmbl_1707	none	STRG.323.2,blat.proc3829871.chain_398,blat.proc3829871.chain_400	3	STRG.323.1,blat.proc3829871.chain_396,blat.proc3829871.chain_399	3
scaffold_11	alt_donor	5258781	5258782	+	asmbl_5519	none	STRG.13602.5	1	STRG.13602.1	1
scaffold_15	retained_exon	6886779	6886835	-	asmbl_15276,asmbl_15278,asmbl_15280	none	STRG.18290.3,STRG.18290.6,blat.proc3829895.chain_2937,blat.proc3829895.chain_2939	4	STRG.18290.1,STRG.18290.2,STRG.18290.5,blat.proc3829895.chain_2933,blat.proc3829895.chain_2934,blat.proc3829895.chain_2936,blat.proc3829895.chain_2940,blat.proc3829895.chain_2942	8
scaffold_16	spliced_intron	433622	434014	-	asmbl_16043,asmbl_16048,asmbl_16053	none	STRG.19039.1,blat.proc3829897.chain_21,blat.proc3829897.chain_26	3	blat.proc3829897.chain_19,blat.proc3829897.chain_23,blat.proc3829897.chain_24	3
scaffold_14	alternate_exon	14374219	14374247	+	asmbl_12529	none	Trinity_GG_9712_c0_g1_i1	1	blat.proc3829879.chain_2342	1
scaffold_28	ends_in_intron	3851245	3851245	-	asmbl_37500	none	Trinity_GG_33516_c0_g1_i4,blat.proc3829901.chain_2566	2	STRG.29564.1,STRG.29564.2	2
scaffold_2	spliced_intron	6350944	6351046	-	asmbl_23223	none	STRG.2000.2	1	Trinity_GG_18078_c0_g1_i4,blat.proc3829887.chain_1764	2
scaffold_14	alternate_exon	13647474	13647921	-	asmbl_13638	none	STRG.17648.1,blat.proc3829895.chain_2399	2	STRG.17648.2	1
scaffold_7	alt_acceptor	13554821	13554822	-	asmbl_50128	none	STRG.9466.1,blat.proc3829891.chain_1631	2	blat.proc3829891.chain_1630	1
scaffold_28	retained_exon	5391170	5391381	+	asmbl_38282	none	Trinity_GG_16450_c0_g1_i9,blat.proc3829885.chain_2787	2	STRG.29664.3,Trinity_GG_16450_c0_g1_i7,blat.proc3829885.chain_2783	3
scaffold_14	alternate_exon	6909278	6909702	+	asmbl_12090,asmbl_12091	none	STRG.17115.1,STRG.17115.2,blat.proc3829879.chain_1881,blat.proc3829879.chain_1882	4	blat.proc3829879.chain_1879	1
scaffold_16	retained_intron	4095144	4095461	+	asmbl_16965	none	blat.proc3829881.chain_77	1	STRG.19214.1,STRG.19214.2,STRG.19214.3,blat.proc3829881.chain_82	4
scaffold_4	alternate_exon	5188786	5190682	-	asmbl_41298,asmbl_41300	none	STRG.4410.3,STRG.4410.4,blat.proc3829889.chain_523	3	STRG.4410.2,blat.proc3829889.chain_522	2
scaffold_13	starts_in_intron	3569005	3569005	+	asmbl_10692,asmbl_10695	none	STRG.15661.2,blat.proc3829879.chain_277	2	STRG.15661.1,blat.proc3829879.chain_278,blat.proc3829879.chain_280	3
scaffold_7	alternate_exon	1227342	1231431	+	asmbl_50474,asmbl_50483,asmbl_50484	none	Trinity_GG_4740_c0_g1_i16,Trinity_GG_4740_c0_g1_i17,Trinity_GG_4740_c0_g1_i21,blat.proc3829875.chain_1042,blat.proc3829875.chain_1046,blat.proc3829875.chain_1047	6	STRG.8627.7	1
scaffold_15	spliced_intron	9854011	9854120	-	asmbl_15436	none	STRG.18491.2	1	STRG.18491.1,STRG.18491.3,STRG.18491.4,Trinity_GG_27412_c1_g1_i2,blat.proc3829895.chain_3276	5
scaffold_12	retained_intron	1383649	1383801	+	asmbl_8436	none	blat.proc3829877.chain_2933	1	STRG.14455.1,blat.proc3829877.chain_2934	2
scaffold_14	alt_donor	583521	583522	+	asmbl_11746	none	STRG.16728.2	1	STRG.16728.3,Trinity_GG_9217_c0_g1_i7,blat.proc3829879.chain_1458	3
scaffold_6	starts_in_intron	9169042	9169042	-	asmbl_48545	none	Trinity_GG_21406_c0_g1_i1,blat.proc3829891.chain_36	2	STRG.7787.1,Trinity_GG_21406_c0_g1_i3,blat.proc3829891.chain_37	3
scaffold_28	alternate_exon	5612961	5613087	-	asmbl_37623,asmbl_37624,asmbl_37625,asmbl_37626,asmbl_37627	none	STRG.29674.1,STRG.29674.2,STRG.29674.3,STRG.29674.6,Trinity_GG_33655_c0_g1_i8,Trinity_GG_33655_c0_g1_i9,blat.proc3829901.chain_2806,blat.proc3829901.chain_2807,blat.proc3829901.chain_2809,blat.proc3829901.chain_2810	10	STRG.29674.5,Trinity_GG_33655_c0_g1_i1,blat.proc3829901.chain_2808	3
scaffold_5	spliced_intron	3935675	3935871	+	asmbl_43925	none	blat.proc3829873.chain_2029	1	STRG.5856.1,Trinity_GG_3221_c0_g1_i3,blat.proc3829873.chain_2028	3
scaffold_6	alt_donor	13918424	13918425	-	asmbl_48892	none	STRG.8132.5,Trinity_GG_21636_c1_g1_i2,blat.proc3829891.chain_441	3	STRG.8132.4,STRG.8132.6	2
scaffold_16	alt_donor	574048	574049	-	asmbl_16058	none	STRG.19026.1	1	STRG.19026.2,blat.proc3829897.chain_79	2
scaffold_2	ends_in_intron	13961018	13961018	-	asmbl_23562	none	Trinity_GG_18351_c2_g1_i1,blat.proc3829887.chain_2280	2	STRG.2383.1,STRG.2383.2,blat.proc3829887.chain_2278	3
scaffold_1	alt_acceptor	10858472	10858473	+	asmbl_2022	none	STRG.709.1,blat.proc3829871.chain_772	2	STRG.709.3	1
scaffold_17	alternate_exon	5064934	5065017	-	asmbl_18948	none	STRG.20216.1,Trinity_GG_28380_c0_g1_i1,blat.proc3829897.chain_1177	3	STRG.20216.2	1
scaffold_12	starts_in_intron	9042992	9042992	-	asmbl_7772	none	blat.proc3829893.chain_3294	1	STRG.14902.1,blat.proc3829893.chain_3293	2
scaffold_1	spliced_intron	18357390	18357458	+	asmbl_2545	none	STRG.1282.2	1	STRG.1282.1,Trinity_GG_721_c0_g1_i2,blat.proc3829871.chain_1288	3
scaffold_9	retained_intron	17851504	17851736	+	asmbl_54629,asmbl_54630,asmbl_54633	none	STRG.11860.1,STRG.11860.3,Trinity_GG_6607_c0_g1_i9,blat.proc3829877.chain_588	4	Trinity_GG_6607_c0_g1_i6,blat.proc3829877.chain_589	2
scaffold_1	alt_donor	20687779	20687780	-	asmbl_1187	none	STRG.1408.1	1	blat.proc3829887.chain_1289	1
scaffold_4	starts_in_intron	15163856	15163856	+	asmbl_43267,asmbl_43268	none	STRG.5119.2,blat.proc3829873.chain_1463,blat.proc3829873.chain_1464	3	STRG.5119.1,blat.proc3829873.chain_1465	2
scaffold_1	starts_in_intron	13041160	13041160	+	asmbl_2282	none	blat.proc3829871.chain_1028	1	STRG.936.1,blat.proc3829871.chain_1029	2
scaffold_8	alt_donor	11298998	11298999	+	asmbl_52205,asmbl_52206	none	STRG.10336.2,STRG.10336.3,Trinity_GG_5757_c0_g1_i1,Trinity_GG_5757_c0_g1_i3,blat.proc3829875.chain_2855,blat.proc3829875.chain_2858	6	STRG.10336.1,Trinity_GG_5757_c0_g1_i2,Trinity_GG_5757_c0_g1_i4,blat.proc3829875.chain_2856,blat.proc3829875.chain_2857	5
scaffold_7	skipped_exon	18685064	18686631	-	asmbl_50311	none	Trinity_GG_22426_c3_g1_i4	1	Trinity_GG_22426_c3_g1_i3,Trinity_GG_22426_c3_g1_i5,blat.proc3829891.chain_1863	3
scaffold_4	starts_in_intron	9626962	9626962	+	asmbl_42951	none	Trinity_GG_2641_c0_g1_i2,blat.proc3829873.chain_1101	2	STRG.4734.1,blat.proc3829873.chain_1100	2
scaffold_15	alternate_exon	4133364	4133547	-	asmbl_15137	none	Trinity_GG_27222_c0_g1_i3,blat.proc3829895.chain_2888	2	STRG.18148.1	1
scaffold_5	retained_intron	4948779	4949120	+	asmbl_43983,asmbl_43985	none	STRG.5946.1,STRG.5946.2	2	Trinity_GG_3271_c0_g1_i1,blat.proc3829873.chain_2130	2
scaffold_9	retained_exon	10916874	10917011	+	asmbl_54295	none	STRG.11397.2	1	STRG.11397.1	1
scaffold_8	starts_in_intron	4694785	4694785	+	asmbl_51838	none	Trinity_GG_5493_c0_g1_i2,blat.proc3829875.chain_2354	2	STRG.9918.1,STRG.9918.2,blat.proc3829875.chain_2353,blat.proc3829875.chain_2355	4
scaffold_11	skipped_exon	3092262	3093974	+	asmbl_5359	none	STRG.13419.2,blat.proc3829877.chain_1889	2	STRG.13419.1	1
scaffold_3	alternate_exon	10276587	10276876	+	asmbl_40212	none	STRG.3461.3,blat.proc3829871.chain_3622	2	STRG.3461.2,STRG.3461.4,blat.proc3829871.chain_3625	3
scaffold_8	alt_acceptor	17492900	17492901	+	asmbl_52475	none	Trinity_GG_5917_c0_g1_i6,blat.proc3829875.chain_3151	2	STRG.10668.1,STRG.10668.2,STRG.10668.3,STRG.10668.4,Trinity_GG_5917_c0_g1_i2,blat.proc3829875.chain_3152,blat.proc3829875.chain_3155,blat.proc3829875.chain_3156,blat.proc3829875.chain_3157,blat.proc3829875.chain_3158	10
scaffold_5	alt_donor	3591572	3591573	-	asmbl_45309,asmbl_45313	none	STRG.5822.1,STRG.5822.2,blat.proc3829889.chain_1927	3	STRG.5822.3,STRG.5822.4,STRG.5822.5,blat.proc3829889.chain_1928	4
scaffold_1	ends_in_intron	12780736	12780736	+	asmbl_2243	none	blat.proc3829871.chain_1003	1	STRG.896.1,blat.proc3829871.chain_1004	2
scaffold_12	alt_donor	6519467	6519468	+	asmbl_8654	none	STRG.14738.2	1	STRG.14738.1	1
scaffold_8	retained_exon	10211399	10211437	+	asmbl_52143	none	STRG.10268.1,Trinity_GG_5645_c0_g1_i2,blat.proc3829875.chain_2657	3	STRG.10268.2,Trinity_GG_5645_c0_g1_i1,blat.proc3829875.chain_2658	3
scaffold_12	starts_in_intron	4797382	4797382	-	asmbl_7593	none	blat.proc3829893.chain_3055	1	STRG.14643.1,blat.proc3829893.chain_3054	2
scaffold_10	retained_intron	7672393	7672816	+	asmbl_4573	none	STRG.12547.2	1	STRG.12547.4	1
scaffold_7	retained_intron	9921560	9921694	-	asmbl_49915	none	blat.proc3829891.chain_1456	1	STRG.9192.1,Trinity_GG_22211_c0_g1_i1,blat.proc3829891.chain_1457,blat.proc3829891.chain_1459	4
scaffold_18	alternate_exon	9634957	9635252	-	asmbl_20099,asmbl_20101	none	STRG.21568.2,blat.proc3829897.chain_2402	2	STRG.21568.1,blat.proc3829897.chain_2405	2
scaffold_12	ends_in_intron	12802708	12802708	+	asmbl_8986	none	STRG.15161.2	1	STRG.15161.1,blat.proc3829877.chain_3578,blat.proc3829877.chain_3579,blat.proc3829877.chain_3580	4
scaffold_12	alt_donor	7172399	7172400	+	asmbl_8684	none	STRG.14775.1	1	blat.proc3829877.chain_3240	1
scaffold_15	alt_acceptor	12436771	12436772	+	asmbl_14508,asmbl_14509,asmbl_14510,asmbl_14511	none	STRG.18688.1,blat.proc3829879.chain_3278,blat.proc3829879.chain_3280,blat.proc3829879.chain_3286	4	blat.proc3829879.chain_3291	1
scaffold_1555	alternate_exon	18	100	-	asmbl_15981	none	STRG.30598.1	1	STRG.30598.4	1
scaffold_9	spliced_intron	11842900	11843151	-	asmbl_55299	none	STRG.11491.1	1	blat.proc3829891.chain_3619,blat.proc3829891.chain_3620,blat.proc3829891.chain_3622,blat.proc3829891.chain_3623,blat.proc3829891.chain_3626	5
scaffold_26	skipped_exon	4141762	4142373	+	asmbl_35402	none	STRG.28106.1	1	STRG.28106.2	1
scaffold_18	alt_acceptor	178202	178203	+	asmbl_20293,asmbl_20295,asmbl_20296	none	STRG.20962.1,STRG.20962.2,STRG.20962.4,Trinity_GG_11535_c0_g1_i6,blat.proc3829881.chain_1817,blat.proc3829881.chain_1818	6	STRG.20962.3,Trinity_GG_11535_c0_g1_i2,blat.proc3829881.chain_1816,blat.proc3829881.chain_1820	4
scaffold_21	retained_intron	4948171	4948378	+	asmbl_28562	none	STRG.24028.1,blat.proc3829883.chain_1173	2	STRG.24028.2,blat.proc3829883.chain_1174	2
scaffold_1	skipped_exon	10949081	10950931	+	asmbl_2027	none	STRG.713.1,blat.proc3829871.chain_751	2	STRG.713.3,blat.proc3829871.chain_749,blat.proc3829871.chain_752	3
scaffold_21	spliced_intron	1053775	1054170	-	asmbl_27402,asmbl_27405	none	STRG.23776.2,Trinity_GG_30261_c0_g1_i4,blat.proc3829899.chain_852	3	STRG.23776.3,STRG.23776.4,Trinity_GG_30261_c0_g1_i7,Trinity_GG_30261_c0_g1_i9,blat.proc3829899.chain_851,blat.proc3829899.chain_854	6
scaffold_1	starts_in_intron	12978354	12978354	+	asmbl_2275	none	Trinity_GG_576_c0_g1_i2	1	STRG.933.1	1
scaffold_27	alt_donor	975998	975999	+	asmbl_35932,asmbl_35936	none	STRG.28576.2,Trinity_GG_15816_c0_g1_i6,blat.proc3829885.chain_1616	3	STRG.28576.1,Trinity_GG_15816_c0_g1_i2,Trinity_GG_15816_c0_g1_i5,blat.proc3829885.chain_1617,blat.proc3829885.chain_1619	5
scaffold_16	retained_intron	13922163	13922274	+	asmbl_17468	none	Trinity_GG_10810_c0_g1_i2,blat.proc3829881.chain_587	2	STRG.19777.1,blat.proc3829881.chain_588	2
scaffold_21	skipped_exon	7725997	7727810	+	asmbl_28780	none	STRG.24301.1	1	STRG.24301.2,blat.proc3829883.chain_1449	2
scaffold_11	alternate_exon	6254551	6258655	+	asmbl_5582	none	STRG.13670.4,Trinity_GG_7547_c0_g1_i6,blat.proc3829877.chain_2177,blat.proc3829877.chain_2178	4	STRG.13670.5	1
scaffold_4	starts_in_intron	10857084	10857084	+	asmbl_43008	none	Trinity_GG_2677_c2_g1_i1	1	STRG.4806.1,STRG.4806.2,blat.proc3829873.chain_1151	3
scaffold_8	spliced_intron	18089772	18090313	+	asmbl_52520	none	blat.proc3829875.chain_3182	1	STRG.10702.3,blat.proc3829875.chain_3181	2
scaffold_24	alt_donor	1078652	1078653	+	asmbl_32077	none	STRG.26363.3,blat.proc3829883.chain_3301	2	STRG.26363.1,blat.proc3829883.chain_3300	2
scaffold_7	starts_in_intron	8210315	8210315	+	asmbl_50855	none	blat.proc3829875.chain_1410	1	STRG.9044.1,blat.proc3829875.chain_1412	2
scaffold_2	alt_acceptor	17974256	17974257	+	asmbl_25245	none	blat.proc3829871.chain_2902	1	STRG.2687.1,STRG.2687.2,blat.proc3829871.chain_2901,blat.proc3829871.chain_2903	4
scaffold_5	alt_acceptor	3102925	3102926	+	asmbl_43877	none	STRG.5799.1,blat.proc3829873.chain_1978	2	STRG.5799.2,blat.proc3829873.chain_1977	2
scaffold_21	alternate_exon	8003615	8003840	+	asmbl_28795	none	blat.proc3829883.chain_1463	1	STRG.24326.1,blat.proc3829883.chain_1461	2
scaffold_9	alt_acceptor	12335647	12335648	-	asmbl_55336	none	STRG.11544.2	1	STRG.11544.1	1
scaffold_4	starts_in_intron	15295762	15295762	+	asmbl_43275	none	STRG.5126.2,blat.proc3829873.chain_1413	2	STRG.5126.1,blat.proc3829873.chain_1410,blat.proc3829873.chain_1411,blat.proc3829873.chain_1412	4
scaffold_13	starts_in_intron	2274429	2274429	-	asmbl_9399	none	blat.proc3829895.chain_315	1	STRG.15533.1,STRG.15533.2,STRG.15533.3,blat.proc3829895.chain_308,blat.proc3829895.chain_309,blat.proc3829895.chain_310,blat.proc3829895.chain_311,blat.proc3829895.chain_313,blat.proc3829895.chain_316,blat.proc3829895.chain_317	10
scaffold_19	retained_intron	13001384	13001875	+	asmbl_22641	none	Trinity_GG_12498_c0_g1_i2,blat.proc3829881.chain_3554	2	Trinity_GG_12498_c0_g1_i1,blat.proc3829881.chain_3555	2
scaffold_1	alt_donor	10414990	10414991	-	asmbl_595	none	STRG.680.4	1	STRG.680.1,STRG.680.3,blat.proc3829887.chain_609	3
scaffold_15	starts_in_intron	7745804	7745804	-	asmbl_15328	none	STRG.18339.2,blat.proc3829895.chain_3095	2	STRG.18339.1,blat.proc3829895.chain_3096	2
scaffold_13	ends_in_intron	7279742	7279742	+	asmbl_11020	none	STRG.16012.1,blat.proc3829879.chain_732	2	STRG.16012.2	1
scaffold_13	spliced_intron	3529936	3530025	+	asmbl_10684,asmbl_10685,asmbl_10686,asmbl_10687	none	STRG.15655.1,STRG.15655.2,blat.proc3829879.chain_361,blat.proc3829879.chain_362,blat.proc3829879.chain_363,blat.proc3829879.chain_364	6	blat.proc3829879.chain_365	1
scaffold_22	retained_intron	4368173	4368545	+	asmbl_29289	none	STRG.24840.2,Trinity_GG_13731_c0_g1_i1,blat.proc3829883.chain_1873	3	STRG.24840.1,blat.proc3829883.chain_1874	2
scaffold_6	ends_in_intron	8586077	8586077	+	asmbl_47095	none	blat.proc3829875.chain_98	1	STRG.7733.1,STRG.7733.2,Trinity_GG_4242_c0_g1_i1,blat.proc3829875.chain_97,blat.proc3829875.chain_99	5
scaffold_19	starts_in_intron	12008066	12008066	-	asmbl_21654	none	Trinity_GG_29534_c0_g1_i2,blat.proc3829897.chain_3202	2	STRG.22509.1,Trinity_GG_29534_c0_g1_i4,blat.proc3829897.chain_3201	3
scaffold_17	starts_in_intron	8216800	8216800	-	asmbl_19128	none	blat.proc3829897.chain_1356	1	STRG.20434.1,STRG.20434.2,blat.proc3829897.chain_1355	3
scaffold_14	alternate_exon	15607708	15608054	-	asmbl_13713	none	STRG.17786.1,blat.proc3829895.chain_2503	2	STRG.17786.3	1
scaffold_13	alt_donor	2376102	2376103	-	asmbl_9417	none	STRG.15538.4	1	STRG.15538.1,STRG.15538.2,STRG.15538.3,blat.proc3829895.chain_294,blat.proc3829895.chain_295,blat.proc3829895.chain_296	6
scaffold_21	spliced_intron	8086347	8086431	-	asmbl_27907	none	STRG.24331.2,blat.proc3829899.chain_1419	2	STRG.24331.1,blat.proc3829899.chain_1420	2
scaffold_10	alt_acceptor	8905459	8905460	-	asmbl_3549	none	STRG.12626.2	1	STRG.12626.1	1
scaffold_14	spliced_intron	399142	399368	+	asmbl_11720,asmbl_11725,asmbl_11729	none	STRG.16722.4,STRG.16722.6,blat.proc3829879.chain_1463	3	STRG.16722.3	1
scaffold_4	retained_intron	8097999	8098087	-	asmbl_41485	none	Trinity_GG_19604_c0_g1_i2	1	STRG.4626.1	1
scaffold_1	starts_in_intron	20610477	20610477	+	asmbl_2632	none	Trinity_GG_793_c0_g1_i1,Trinity_GG_793_c0_g1_i3,blat.proc3829871.chain_1401,blat.proc3829871.chain_1403	4	STRG.1406.1,blat.proc3829871.chain_1402	2
scaffold_9	alt_acceptor	11777727	11777728	+	asmbl_54362	none	STRG.11478.1	1	STRG.11478.2	1
scaffold_1	alternate_exon	19699025	19699056	-	asmbl_1152	none	STRG.1356.2	1	STRG.1356.1,blat.proc3829887.chain_1248,blat.proc3829887.chain_1249	3
scaffold_2	spliced_intron	1598188	1598295	+	asmbl_24233,asmbl_24235,asmbl_24239,asmbl_24240	none	STRG.1628.1,blat.proc3829871.chain_1666,blat.proc3829871.chain_1667,blat.proc3829871.chain_1668,blat.proc3829871.chain_1669	5	STRG.1628.2,STRG.1628.3,STRG.1628.4	3
scaffold_4	spliced_intron	19604777	19604824	-	asmbl_42220	none	STRG.5547.2	1	STRG.5547.1	1
scaffold_6	ends_in_intron	12497977	12497977	+	asmbl_47351	none	blat.proc3829875.chain_347	1	STRG.8005.1,STRG.8005.2,Trinity_GG_4358_c0_g2_i1,Trinity_GG_4358_c0_g2_i2,blat.proc3829875.chain_345,blat.proc3829875.chain_346,blat.proc3829875.chain_350,blat.proc3829875.chain_351	8
scaffold_1	retained_intron	9163722	9163832	-	asmbl_522	none	blat.proc3829887.chain_524	1	STRG.610.1,blat.proc3829887.chain_526,blat.proc3829887.chain_528	3
scaffold_26	alt_donor	10154163	10154164	+	asmbl_35827	none	STRG.28514.1	1	STRG.28514.2,STRG.28514.3,Trinity_GG_15781_c0_g1_i1,Trinity_GG_15781_c0_g1_i2,blat.proc3829885.chain_1553,blat.proc3829885.chain_1554,blat.proc3829885.chain_1555	7
scaffold_14	retained_intron	8589819	8590023	+	asmbl_12235	none	STRG.17274.2,blat.proc3829879.chain_2006	2	STRG.17274.1,blat.proc3829879.chain_2005	2
scaffold_11	alt_donor	12410265	12410266	-	asmbl_7067	none	STRG.14149.3,blat.proc3829893.chain_2537	2	STRG.14149.2	1
scaffold_28	retained_intron	7421600	7421706	-	asmbl_37729	none	blat.proc3829901.chain_2841	1	STRG.29795.1,blat.proc3829901.chain_2842	2
scaffold_6	alt_acceptor	14900003	14900004	+	asmbl_47584	none	STRG.8258.2,Trinity_GG_4552_c0_g1_i1,blat.proc3829875.chain_676	3	STRG.8258.1,Trinity_GG_4552_c0_g1_i2,blat.proc3829875.chain_675	3
scaffold_27	alt_donor	1090759	1090760	+	asmbl_35947,asmbl_35950	none	STRG.28588.1,STRG.28588.3,blat.proc3829885.chain_1642	3	STRG.28588.2,blat.proc3829885.chain_1644	2
scaffold_14	alt_donor	14536670	14536671	-	asmbl_13673,asmbl_13674	none	STRG.17699.3,STRG.17699.4,Trinity_GG_26960_c0_g1_i1	3	STRG.17699.1	1
scaffold_5	retained_intron	14537738	14537847	+	asmbl_44609	none	STRG.6639.2,blat.proc3829873.chain_2725	2	STRG.6639.1,blat.proc3829873.chain_2724	2
scaffold_12	alternate_exon	7618666	7618786	-	asmbl_7735,asmbl_7736	none	STRG.14826.5,STRG.14826.6	2	STRG.14826.1,STRG.14826.2,STRG.14826.3,STRG.14826.4,blat.proc3829893.chain_3214	5
scaffold_8	alt_acceptor	8882508	8882509	-	asmbl_52970	none	blat.proc3829891.chain_2294	1	STRG.10131.1,blat.proc3829891.chain_2293	2
scaffold_20	alt_acceptor	11613316	11613317	-	asmbl_27093	none	blat.proc3829899.chain_703	1	STRG.23657.1,blat.proc3829899.chain_696	2
scaffold_10	starts_in_intron	7253499	7253499	-	asmbl_3452,asmbl_3453	none	blat.proc3829893.chain_1023,blat.proc3829893.chain_1025	2	STRG.12526.1,STRG.12526.2,blat.proc3829893.chain_1021,blat.proc3829893.chain_1022,blat.proc3829893.chain_1024	5
scaffold_20	alt_acceptor	2074857	2074858	+	asmbl_25621	none	STRG.22928.1,blat.proc3829883.chain_75	2	STRG.22928.2	1
scaffold_32	alt_acceptor	37625	37626	+	asmbl_40899	none	STRG.29997.2	1	blat.proc3829875.chain_987	1
scaffold_3	spliced_intron	18347595	18347705	-	asmbl_39560	none	STRG.4038.1,blat.proc3829889.chain_77	2	blat.proc3829873.chain_417	1
scaffold_13	spliced_intron	3747652	3747803	+	asmbl_10721,asmbl_10723,asmbl_10724	none	STRG.15683.1,STRG.15683.2,Trinity_GG_8626_c0_g1_i1,blat.proc3829879.chain_381	4	Trinity_GG_8626_c0_g1_i4,blat.proc3829879.chain_382	2
scaffold_5	spliced_intron	5060700	5061166	+	asmbl_44006	none	STRG.5955.1,blat.proc3829873.chain_2052	2	Trinity_GG_3232_c0_g1_i3,blat.proc3829873.chain_2051	2
scaffold_15	retained_intron	5738488	5739051	-	asmbl_15241,asmbl_15242,asmbl_15243,asmbl_15245	none	STRG.18248.1,STRG.18248.2,STRG.18248.3,blat.proc3829895.chain_3018	4	STRG.18248.4	1
scaffold_15	retained_intron	15414405	15414510	+	asmbl_14728,asmbl_14729,asmbl_14731,asmbl_14733,asmbl_14734,asmbl_14736	none	STRG.18922.1,STRG.18922.2,STRG.18922.4,STRG.18922.5,blat.proc3829879.chain_3551,blat.proc3829879.chain_3552,blat.proc3829879.chain_3556	7	STRG.18922.3,STRG.18922.6,Trinity_GG_10387_c0_g1_i3,blat.proc3829879.chain_3550,blat.proc3829879.chain_3553,blat.proc3829879.chain_3554,blat.proc3829879.chain_3557	7
scaffold_12	alt_donor	12015109	12015110	+	asmbl_8937	none	STRG.15103.2,Trinity_GG_8284_c0_g1_i7,blat.proc3829877.chain_3496	3	STRG.15103.1,Trinity_GG_8284_c0_g1_i3,blat.proc3829877.chain_3495	3
scaffold_7	alt_donor	7790075	7790076	-	asmbl_49788,asmbl_49791	none	STRG.9024.2,Trinity_GG_22117_c0_g1_i2,Trinity_GG_22117_c0_g1_i7,blat.proc3829891.chain_1293,blat.proc3829891.chain_1295	5	STRG.9024.1,Trinity_GG_22117_c0_g1_i4,Trinity_GG_22117_c0_g1_i5,blat.proc3829891.chain_1294,blat.proc3829891.chain_1296	5
scaffold_21	alternate_exon	8129600	8129917	-	asmbl_27913	none	blat.proc3829899.chain_1384	1	STRG.24334.5,blat.proc3829899.chain_1383,blat.proc3829899.chain_1385,blat.proc3829899.chain_1387	4
scaffold_2	retained_intron	9788213	9788312	+	asmbl_24726	none	blat.proc3829871.chain_2217	1	STRG.2185.1,blat.proc3829871.chain_2216,blat.proc3829871.chain_2219,blat.proc3829871.chain_2220,blat.proc3829871.chain_2221,blat.proc3829871.chain_2222	6
scaffold_2	alt_acceptor	8566862	8566863	+	asmbl_24675	none	STRG.2127.1,Trinity_GG_1204_c0_g1_i1,blat.proc3829871.chain_2241	3	STRG.2127.2,Trinity_GG_1204_c0_g1_i2,blat.proc3829871.chain_2242	3
scaffold_11	spliced_intron	9950767	9950860	-	asmbl_6950	none	STRG.14010.2	1	blat.proc3829893.chain_2419	1
scaffold_21	spliced_intron	1054388	1054549	-	asmbl_27400,asmbl_27405,asmbl_27408	none	STRG.23776.2,STRG.23776.3,Trinity_GG_30261_c0_g1_i11,blat.proc3829899.chain_850	4	Trinity_GG_30261_c0_g1_i7,blat.proc3829899.chain_851	2
scaffold_12	retained_intron	4720907	4720996	-	asmbl_7565	none	Trinity_GG_25166_c0_g1_i3,blat.proc3829893.chain_3006	2	STRG.14636.1,STRG.14636.2,blat.proc3829893.chain_3003,blat.proc3829893.chain_3004	4
scaffold_17	spliced_intron	9854049	9854615	-	asmbl_19257	none	STRG.20595.2,blat.proc3829897.chain_1525	2	STRG.20595.1,Trinity_GG_28586_c0_g1_i1,blat.proc3829897.chain_1526	3
scaffold_20	retained_intron	11599629	11600426	-	asmbl_27095	none	STRG.23657.1	1	STRG.23657.3	1
scaffold_7	alt_donor	5917154	5917155	-	asmbl_49712,asmbl_49713,asmbl_49714,asmbl_49715,asmbl_49717	none	STRG.8887.1,STRG.8887.2,STRG.8887.3,STRG.8887.4,blat.proc3829891.chain_1164,blat.proc3829891.chain_1165,blat.proc3829891.chain_1168	7	STRG.8887.5,Trinity_GG_22041_c0_g1_i6,blat.proc3829891.chain_1163,blat.proc3829891.chain_1166,blat.proc3829891.chain_1167	5
scaffold_15	retained_intron	11304106	11304275	+	asmbl_14437	none	Trinity_GG_10200_c0_g1_i5,blat.proc3829879.chain_3189	2	STRG.18591.1,Trinity_GG_10200_c0_g1_i4,blat.proc3829879.chain_3184,blat.proc3829879.chain_3185,blat.proc3829879.chain_3186,blat.proc3829879.chain_3187	6
scaffold_27	skipped_exon	2829483	2832414	+	asmbl_36084	none	STRG.28748.2,blat.proc3829885.chain_1824	2	STRG.28748.1,STRG.28748.3,blat.proc3829885.chain_1826,blat.proc3829885.chain_1828	4
scaffold_19	spliced_intron	3309537	3309592	-	asmbl_21306	none	STRG.22005.2	1	STRG.22005.1,Trinity_GG_29263_c0_g1_i1,blat.proc3829897.chain_2730	3
scaffold_21	starts_in_intron	7812671	7812671	-	asmbl_27871	none	STRG.24304.1,blat.proc3829899.chain_1366	2	blat.proc3829899.chain_1364	1
scaffold_4	spliced_intron	16480998	16481263	-	asmbl_41926	none	STRG.5226.1,blat.proc3829889.chain_1289	2	STRG.5226.2,Trinity_GG_19942_c0_g2_i2,blat.proc3829889.chain_1293,blat.proc3829889.chain_1294	4
scaffold_12	retained_intron	7113789	7113837	+	asmbl_8675,asmbl_8677	none	STRG.14760.1,blat.proc3829877.chain_3208,blat.proc3829877.chain_3209	3	blat.proc3829877.chain_3210	1
scaffold_18	spliced_intron	4570648	4570746	+	asmbl_20562	none	blat.proc3829881.chain_2153	1	STRG.21237.1,blat.proc3829881.chain_2151,blat.proc3829881.chain_2152	3
scaffold_21	alt_donor	7607712	7607713	+	asmbl_28771	none	STRG.24288.2,blat.proc3829883.chain_1437	2	STRG.24288.1,blat.proc3829883.chain_1436	2
scaffold_17	spliced_intron	5711677	5712050	-	asmbl_18988,asmbl_18989,asmbl_18992	none	STRG.20262.1,STRG.20262.2,blat.proc3829897.chain_1234,blat.proc3829897.chain_1235	4	blat.proc3829897.chain_1236,blat.proc3829897.chain_1237	2
scaffold_24	spliced_intron	3335564	3335692	+	asmbl_32152	none	STRG.26510.1,blat.proc3829883.chain_3397	2	blat.proc3829883.chain_3396	1
scaffold_19	retained_exon	12392290	12392819	-	asmbl_21691,asmbl_21692,asmbl_21693,asmbl_21694	none	STRG.22557.1,STRG.22557.2,blat.proc3829897.chain_3269,blat.proc3829897.chain_3270,blat.proc3829897.chain_3271,blat.proc3829897.chain_3272	6	STRG.22557.3,blat.proc3829897.chain_3268	2
scaffold_87	alt_acceptor	14818	14819	+	asmbl_53702	none	STRG.30139.5	1	STRG.30139.3,STRG.30139.6	2
scaffold_12	alternate_exon	14188102	14188210	-	asmbl_8123	none	STRG.15242.2	1	STRG.15242.1	1
scaffold_14	spliced_intron	13897375	13897695	+	asmbl_12496,asmbl_12497,asmbl_12499	none	STRG.17653.1,STRG.17653.2,STRG.17653.4,blat.proc3829879.chain_2349	4	blat.proc3829879.chain_2353	1
scaffold_21	alternate_exon	730477	730899	+	asmbl_28312,asmbl_28313	none	STRG.23754.2,STRG.23754.5,Trinity_GG_13126_c0_g1_i1,Trinity_GG_13126_c0_g3_i1,blat.proc3829883.chain_853,blat.proc3829883.chain_855	6	STRG.23754.1	1
scaffold_550	alt_acceptor	1307	1308	+	asmbl_46516,asmbl_46518	none	STRG.30343.1,blat.proc3829885.chain_3383	2	STRG.30343.2,blat.proc3829885.chain_3382	2
scaffold_1	alternate_exon	12745370	12745658	-	asmbl_757,asmbl_761	none	STRG.892.3,STRG.892.4,blat.proc3829887.chain_755	3	STRG.892.1,STRG.892.5,blat.proc3829887.chain_754	3
scaffold_28	starts_in_intron	5612215	5612215	-	asmbl_37622	none	STRG.29674.4,blat.proc3829901.chain_2811	2	STRG.29674.1,STRG.29674.2,STRG.29674.3,STRG.29674.6,Trinity_GG_33655_c0_g1_i8,Trinity_GG_33655_c0_g1_i9,blat.proc3829901.chain_2806,blat.proc3829901.chain_2807,blat.proc3829901.chain_2809,blat.proc3829901.chain_2810	10
scaffold_25	starts_in_intron	4809241	4809241	+	asmbl_33530	none	Trinity_GG_15078_c0_g1_i5,blat.proc3829885.chain_377	2	STRG.27400.1,STRG.27400.2,Trinity_GG_15078_c0_g1_i1,Trinity_GG_15078_c0_g1_i6,blat.proc3829885.chain_374,blat.proc3829885.chain_375,blat.proc3829885.chain_376	7
scaffold_18	retained_intron	4570648	4570743	+	asmbl_20559,asmbl_20561	none	STRG.21237.1,blat.proc3829881.chain_2151,blat.proc3829881.chain_2152	3	STRG.21237.2	1
scaffold_25	alt_acceptor	7322164	7322165	-	asmbl_34369	none	STRG.27566.4	1	STRG.27566.1,STRG.27566.2	2
scaffold_14	starts_in_intron	7521951	7521951	+	asmbl_12152	none	Trinity_GG_9453_c0_g1_i3,blat.proc3829879.chain_1912	2	STRG.17182.1,STRG.17182.2,Trinity_GG_9453_c0_g1_i1,Trinity_GG_9453_c0_g1_i2,blat.proc3829879.chain_1913,blat.proc3829879.chain_1914	6
scaffold_18	skipped_exon	1895347	1897477	-	asmbl_19699,asmbl_19702	none	STRG.21072.4,STRG.21072.6	2	blat.proc3829897.chain_1898,blat.proc3829897.chain_1899,blat.proc3829897.chain_1901,blat.proc3829897.chain_1902	4
scaffold_23	ends_in_intron	6854403	6854403	-	asmbl_31708	none	blat.proc3829899.chain_3087	1	STRG.26000.2,STRG.26000.3	2
scaffold_27	retained_intron	2998365	2998500	+	asmbl_36112	none	Trinity_GG_15918_c0_g1_i12,blat.proc3829885.chain_1845	2	STRG.28767.1,STRG.28767.2,STRG.28767.3,STRG.28767.4,STRG.28767.5,blat.proc3829885.chain_1839,blat.proc3829885.chain_1840,blat.proc3829885.chain_1841,blat.proc3829885.chain_1842,blat.proc3829885.chain_1843,blat.proc3829885.chain_1844,blat.proc3829885.chain_1847,blat.proc3829885.chain_1848,blat.proc3829885.chain_1849	14
scaffold_26	retained_exon	5649357	5649445	-	asmbl_34885,asmbl_34886,asmbl_34888,asmbl_34889,asmbl_34890,asmbl_34891	none	STRG.28255.2,STRG.28255.3,blat.proc3829901.chain_1436,blat.proc3829901.chain_1437,blat.proc3829901.chain_1438,blat.proc3829901.chain_1439,blat.proc3829901.chain_1440,blat.proc3829901.chain_1441,blat.proc3829901.chain_1442,blat.proc3829901.chain_1443	10	STRG.28255.1	1
scaffold_7	alt_donor	18394861	18394862	-	asmbl_50289,asmbl_50294	none	STRG.9659.3,Trinity_GG_22427_c0_g1_i11,blat.proc3829891.chain_1875	3	STRG.9659.1,STRG.9659.2,STRG.9659.4,STRG.9659.5,blat.proc3829891.chain_1868,blat.proc3829891.chain_1869,blat.proc3829891.chain_1871,blat.proc3829891.chain_1873	8
scaffold_2	retained_exon	9140183	9140186	-	asmbl_23370,asmbl_23371	none	blat.proc3829887.chain_2071,blat.proc3829887.chain_2072	2	STRG.2160.1,STRG.2160.2	2
scaffold_5	spliced_intron	5838814	5839033	-	asmbl_45446	none	STRG.5989.1,blat.proc3829889.chain_2071	2	blat.proc3829889.chain_2072	1
scaffold_2	alt_donor	4774329	4774330	-	asmbl_23122	none	STRG.1898.2,blat.proc3829887.chain_1744	2	STRG.1898.1,blat.proc3829887.chain_1743	2
scaffold_13	alternate_exon	8803187	8805902	-	asmbl_9947	none	blat.proc3829895.chain_942	1	blat.proc3829895.chain_944	1
scaffold_1	retained_exon	6752807	6752968	+	asmbl_1844	none	STRG.461.2,blat.proc3829871.chain_517	2	STRG.461.3,blat.proc3829871.chain_515	2
scaffold_26	spliced_intron	9029889	9029987	+	asmbl_35719	none	STRG.28448.1,blat.proc3829885.chain_1487	2	Trinity_GG_15748_c0_g1_i2,blat.proc3829885.chain_1489	2
scaffold_20	alternate_exon	425609	425818	+	asmbl_25506	none	STRG.22729.1	1	STRG.22729.5	1
scaffold_11	alternate_exon	3852758	3855022	+	asmbl_5423	none	STRG.13490.1,Trinity_GG_7403_c0_g1_i3,blat.proc3829877.chain_1956	3	STRG.13490.2,Trinity_GG_7403_c0_g1_i2,blat.proc3829877.chain_1957	3
scaffold_18	alt_acceptor	4615522	4615523	+	asmbl_20566	none	STRG.21243.2,blat.proc3829881.chain_2082,blat.proc3829881.chain_2083	3	STRG.21243.3	1
scaffold_16	alt_acceptor	9573726	9573727	+	asmbl_17297	none	STRG.19547.1,Trinity_GG_10713_c0_g1_i1	2	STRG.19547.2,Trinity_GG_10713_c0_g1_i2,blat.proc3829881.chain_433	3
scaffold_2	retained_intron	5183182	5183932	-	asmbl_23158	none	STRG.1936.1,blat.proc3829887.chain_1855	2	STRG.1936.2,blat.proc3829887.chain_1860	2
scaffold_16	skipped_exon	440746	442564	-	asmbl_16043	none	STRG.19039.1	1	STRG.19039.4	1
scaffold_3	starts_in_intron	16340131	16340131	-	asmbl_39444	none	Trinity_GG_19178_c0_g1_i4,blat.proc3829887.chain_3726	2	STRG.3905.1,blat.proc3829887.chain_3725	2
scaffold_22	skipped_exon	685158	685914	+	asmbl_29173	none	Trinity_GG_13656_c0_g1_i1,blat.proc3829883.chain_1754	2	STRG.24704.1	1
scaffold_19	retained_intron	11459558	11459723	-	asmbl_21598	none	blat.proc3829897.chain_3115	1	STRG.22464.1,blat.proc3829897.chain_3111,blat.proc3829897.chain_3112,blat.proc3829897.chain_3116	4
scaffold_19	alt_acceptor	12392010	12392011	-	asmbl_21690	none	STRG.22557.3,blat.proc3829897.chain_3268	2	STRG.22557.1,STRG.22557.2,blat.proc3829897.chain_3269,blat.proc3829897.chain_3270,blat.proc3829897.chain_3271,blat.proc3829897.chain_3272	6
scaffold_26	spliced_intron	3591176	3591371	+	asmbl_35330	none	blat.proc3829885.chain_999	1	STRG.28022.1	1
scaffold_300	alt_acceptor	2136	2137	+	asmbl_40852	none	blat.proc3829885.chain_3281	1	STRG.30247.1,STRG.30247.2,STRG.30247.3,blat.proc3829885.chain_3278,blat.proc3829885.chain_3279	5
scaffold_5	starts_in_intron	16591163	16591163	-	asmbl_46136	none	blat.proc3829889.chain_2890	1	STRG.6840.1,STRG.6840.2	2
scaffold_21	skipped_exon	692017	694234	+	asmbl_28305	none	STRG.23742.2	1	STRG.23742.1	1
scaffold_9	alt_donor	3374714	3374715	+	asmbl_53874	none	blat.proc3829875.chain_3400	1	blat.proc3829875.chain_3402	1
scaffold_12	retained_intron	1059560	1059598	+	asmbl_8418,asmbl_8419,asmbl_8420	none	STRG.14436.1,STRG.14436.2,STRG.14436.3,blat.proc3829877.chain_2886	4	STRG.14436.4	1
scaffold_12	retained_exon	8915968	8916065	+	asmbl_8804	none	STRG.14884.1,blat.proc3829877.chain_3414	2	STRG.14884.2	1
scaffold_5	retained_intron	5045141	5045218	+	asmbl_43993	none	Trinity_GG_3261_c0_g2_i1,blat.proc3829873.chain_2111	2	blat.proc3829873.chain_2113	1
scaffold_22	alt_acceptor	744120	744121	-	asmbl_29893	none	STRG.24710.2	1	STRG.24710.3,blat.proc3829899.chain_1764	2
scaffold_17	retained_intron	1303722	1303950	-	asmbl_18744	none	blat.proc3829897.chain_929	1	STRG.19954.1,STRG.19954.2,blat.proc3829897.chain_927,blat.proc3829897.chain_928,blat.proc3829897.chain_930,blat.proc3829897.chain_931,blat.proc3829897.chain_932	7
scaffold_16	alternate_exon	8638569	8641078	+	asmbl_17231	none	STRG.19479.2	1	STRG.19479.4	1
scaffold_18	ends_in_intron	13471754	13471754	+	asmbl_21041	none	blat.proc3829881.chain_2679	1	Trinity_GG_12008_c0_g1_i1,blat.proc3829881.chain_2680,blat.proc3829881.chain_2681	3
scaffold_1	alt_acceptor	858332	858333	-	asmbl_25,asmbl_26,asmbl_28	none	STRG.43.1,STRG.43.2,blat.proc3829885.chain_3697,blat.proc3829885.chain_3698,blat.proc3829885.chain_3699	5	blat.proc3829885.chain_3700	1
scaffold_19	alt_acceptor	12687757	12687758	-	asmbl_21741	none	blat.proc3829897.chain_3331	1	STRG.22579.1,STRG.22579.2,blat.proc3829897.chain_3329,blat.proc3829897.chain_3330,blat.proc3829897.chain_3332	5
scaffold_17	retained_intron	1729059	1729151	+	asmbl_17756	none	blat.proc3829881.chain_835	1	STRG.19996.1,STRG.19996.2,blat.proc3829881.chain_836	3
scaffold_25	alt_acceptor	8708652	8708653	+	asmbl_33751	none	Trinity_GG_15273_c0_g1_i11,blat.proc3829885.chain_703	2	STRG.27679.1,STRG.27679.2,STRG.27679.3,Trinity_GG_15273_c0_g1_i1,Trinity_GG_15273_c0_g1_i7,blat.proc3829885.chain_693,blat.proc3829885.chain_696	7
scaffold_15	starts_in_intron	13573972	13573972	-	asmbl_15662	none	blat.proc3829895.chain_3534	1	STRG.18777.1,STRG.18777.2,blat.proc3829895.chain_3535	3
scaffold_24	alternate_exon	8896647	8896856	-	asmbl_33108	none	STRG.26892.1	1	blat.proc3829901.chain_194	1
scaffold_20	retained_intron	9656237	9656272	+	asmbl_26034	none	Trinity_GG_12937_c0_g1_i3,Trinity_GG_12937_c0_g1_i4,blat.proc3829883.chain_516,blat.proc3829883.chain_517	4	STRG.23495.2	1
scaffold_17	retained_intron	8880820	8880901	+	asmbl_18168	none	blat.proc3829881.chain_1217	1	STRG.20493.1,blat.proc3829881.chain_1216	2
scaffold_28	alt_acceptor	8411412	8411413	+	asmbl_38437	none	STRG.29889.1,Trinity_GG_16553_c0_g1_i1,blat.proc3829885.chain_2981	3	STRG.29889.2	1
scaffold_5	ends_in_intron	6910864	6910864	+	asmbl_44121	none	Trinity_GG_3318_c0_g1_i2,blat.proc3829873.chain_2229	2	STRG.6096.1,STRG.6096.2,blat.proc3829873.chain_2232,blat.proc3829873.chain_2233	4
scaffold_18	spliced_intron	8399580	8401325	+	asmbl_20861	none	STRG.21503.4	1	STRG.21503.3,blat.proc3829881.chain_2516	2
scaffold_6	ends_in_intron	6871081	6871081	+	asmbl_46950,asmbl_46951,asmbl_46952	none	STRG.7585.1,STRG.7585.2,blat.proc3829873.chain_3677,blat.proc3829873.chain_3679,blat.proc3829873.chain_3680	5	STRG.7585.3,blat.proc3829873.chain_3678	2
scaffold_14	spliced_intron	3590570	3591023	+	asmbl_11932	none	STRG.16928.1	1	STRG.16928.2,Trinity_GG_9328_c1_g1_i1,blat.proc3829879.chain_1680	3
scaffold_4	starts_in_intron	16646628	16646628	+	asmbl_43325	none	Trinity_GG_2916_c0_g1_i3	1	STRG.5243.1,STRG.5243.2	2
scaffold_18	spliced_intron	11327584	11327791	+	asmbl_20962,asmbl_20966	none	STRG.21666.2,blat.proc3829881.chain_2659	2	STRG.21666.1,blat.proc3829881.chain_2648,blat.proc3829881.chain_2651	3
scaffold_13	alternate_exon	4591094	4591164	+	asmbl_10798	none	STRG.15772.1	1	STRG.15772.2	1
scaffold_20	alt_acceptor	10384959	10384960	+	asmbl_26109,asmbl_26115	none	STRG.23569.5,Trinity_GG_12979_c0_g1_i2,blat.proc3829883.chain_594	3	STRG.23569.1,STRG.23569.2,STRG.23569.3,Trinity_GG_12979_c0_g1_i5,Trinity_GG_12979_c0_g1_i6,blat.proc3829883.chain_591,blat.proc3829883.chain_592	7
scaffold_3	alt_donor	11660951	11660952	+	asmbl_40324,asmbl_40326	none	STRG.3612.2,STRG.3612.4,Trinity_GG_2013_c0_g1_i4,blat.proc3829871.chain_3734,blat.proc3829871.chain_3738	5	STRG.3612.1,STRG.3612.3,Trinity_GG_2013_c0_g1_i1,Trinity_GG_2013_c0_g1_i5,blat.proc3829871.chain_3736,blat.proc3829871.chain_3737	6
scaffold_9	starts_in_intron	12270840	12270840	+	asmbl_54403	none	Trinity_GG_6417_c0_g1_i4,blat.proc3829877.chain_277	2	STRG.11539.1,blat.proc3829877.chain_276,blat.proc3829877.chain_278,blat.proc3829877.chain_279	4
scaffold_4	alternate_exon	18275597	18275679	-	asmbl_42107	none	STRG.5423.2	1	STRG.5423.1,STRG.5423.3	2
scaffold_9	alt_donor	6743427	6743428	-	asmbl_55036	none	STRG.11176.2	1	STRG.11176.1,blat.proc3829891.chain_3303,blat.proc3829891.chain_3304	3
scaffold_12	alt_acceptor	7275083	7275084	-	asmbl_7697	none	STRG.14787.3	1	STRG.14787.1,STRG.14787.2,Trinity_GG_25259_c0_g1_i1,Trinity_GG_25259_c0_g1_i2,Trinity_GG_25259_c0_g1_i3,blat.proc3829893.chain_3175,blat.proc3829893.chain_3176,blat.proc3829893.chain_3177	8
scaffold_16	skipped_exon	13216831	13218820	+	asmbl_17455,asmbl_17459	none	STRG.19770.2,STRG.19770.3,blat.proc3829881.chain_595	3	STRG.19770.1,blat.proc3829881.chain_596,blat.proc3829881.chain_598,blat.proc3829881.chain_599	4
scaffold_7	alternate_exon	16149037	16149349	+	asmbl_51348,asmbl_51349	none	STRG.9568.1,STRG.9568.2,Trinity_GG_5276_c0_g1_i1,Trinity_GG_5276_c0_g1_i2,blat.proc3829875.chain_1960,blat.proc3829875.chain_1961	6	STRG.9568.3	1
scaffold_8	ends_in_intron	8747538	8747538	+	asmbl_52017	none	Trinity_GG_5634_c0_g1_i3,blat.proc3829875.chain_2639	2	STRG.10124.1,STRG.10124.2,blat.proc3829875.chain_2641	3
scaffold_14	alternate_exon	7430071	7430102	+	asmbl_12139	none	STRG.17164.1	1	STRG.17164.2,STRG.17164.3,blat.proc3829879.chain_1885,blat.proc3829879.chain_1886	4
scaffold_13	ends_in_intron	16437224	16437224	+	asmbl_11554	none	Trinity_GG_9187_c0_g1_i4,blat.proc3829879.chain_1412	2	STRG.16684.1,STRG.16684.2,Trinity_GG_9187_c0_g1_i5,Trinity_GG_9187_c0_g1_i6,blat.proc3829879.chain_1408,blat.proc3829879.chain_1410,blat.proc3829879.chain_1411	7
scaffold_22	skipped_exon	9718380	9721163	+	asmbl_29602	none	STRG.25292.2	1	STRG.25292.1,STRG.25292.3,STRG.25292.4,blat.proc3829883.chain_2231	4
scaffold_24	alternate_exon	5309278	5311809	-	asmbl_32881	none	STRG.26598.1,blat.proc3829899.chain_3662	2	Trinity_GG_31886_c0_g1_i2,blat.proc3829899.chain_3663	2
scaffold_11	spliced_intron	8073049	8073152	-	asmbl_6800,asmbl_6801,asmbl_6803,asmbl_6804,asmbl_6805,asmbl_6806,asmbl_6815	none	STRG.13802.1,STRG.13802.2,Trinity_GG_24711_c0_g1_i18,Trinity_GG_24711_c0_g1_i3,blat.proc3829893.chain_2197,blat.proc3829893.chain_2206,blat.proc3829893.chain_2209,blat.proc3829893.chain_2211	8	Trinity_GG_24711_c0_g1_i17,Trinity_GG_24711_c0_g1_i8,Trinity_GG_24711_c0_g1_i9,blat.proc3829893.chain_2199,blat.proc3829893.chain_2204,blat.proc3829893.chain_2205	6
scaffold_3	alternate_exon	12034962	12039184	-	asmbl_39154,asmbl_39155	none	STRG.3625.1,STRG.3625.2,blat.proc3829887.chain_3397,blat.proc3829887.chain_3398	4	STRG.3625.3,Trinity_GG_19000_c0_g1_i2,blat.proc3829887.chain_3399	3
scaffold_15	starts_in_intron	15923049	15923049	-	asmbl_15830	none	Trinity_GG_27649_c0_g1_i1,blat.proc3829895.chain_3710	2	STRG.18971.1,Trinity_GG_27649_c0_g1_i2,blat.proc3829895.chain_3709	3
scaffold_25	retained_exon	6438069	6438157	+	asmbl_33626	none	STRG.27506.2,blat.proc3829885.chain_534	2	STRG.27506.3	1
scaffold_5	alt_acceptor	13945922	13945923	-	asmbl_45962	none	STRG.6596.2	1	STRG.6596.1	1
scaffold_4	spliced_intron	19354741	19354943	-	asmbl_42185,asmbl_42187,asmbl_42188,asmbl_42189,asmbl_42190,asmbl_42192	none	STRG.5528.1,blat.proc3829889.chain_1605,blat.proc3829889.chain_1609,blat.proc3829889.chain_1612,blat.proc3829889.chain_1613,blat.proc3829889.chain_1615,blat.proc3829889.chain_1617	7	Trinity_GG_20122_c0_g1_i17,Trinity_GG_20122_c0_g1_i7,blat.proc3829889.chain_1616	3
scaffold_15	starts_in_intron	6516463	6516463	+	asmbl_14196	none	blat.proc3829879.chain_2871	1	STRG.18278.1,blat.proc3829879.chain_2870	2
scaffold_13	alt_donor	5381774	5381775	+	asmbl_10825	none	STRG.15819.2	1	STRG.15819.1,blat.proc3829879.chain_506	2
scaffold_18	alt_donor	1512722	1512723	+	asmbl_20385	none	STRG.21033.2	1	STRG.21033.1,STRG.21033.3,blat.proc3829881.chain_1931	3
scaffold_20	alt_acceptor	11574016	11574017	-	asmbl_27082,asmbl_27083,asmbl_27084	none	STRG.23650.1,STRG.23650.2,STRG.23650.3,blat.proc3829899.chain_596,blat.proc3829899.chain_597	5	STRG.23650.4	1
scaffold_11	retained_intron	4639501	4639586	+	asmbl_5453	none	Trinity_GG_7453_c0_g1_i3,blat.proc3829877.chain_2037	2	STRG.13534.1,blat.proc3829877.chain_2038,blat.proc3829877.chain_2039	3
scaffold_10	skipped_exon	4158723	4159782	-	asmbl_3182	none	STRG.12242.1,blat.proc3829893.chain_685	2	STRG.12242.2,STRG.12242.3,blat.proc3829893.chain_687	3
scaffold_20	alt_acceptor	5544109	5544110	+	asmbl_25776	none	STRG.23164.1	1	STRG.23164.2	1
scaffold_21	spliced_intron	10848260	10848466	-	asmbl_28103	none	STRG.24540.2,blat.proc3829899.chain_1570	2	STRG.24540.1,blat.proc3829899.chain_1569	2
scaffold_3	ends_in_intron	15929239	15929239	-	asmbl_39407	none	Trinity_GG_19149_c0_g1_i3,blat.proc3829887.chain_3676	2	STRG.3872.1,STRG.3872.2,blat.proc3829887.chain_3677,blat.proc3829887.chain_3678	4
scaffold_12	ends_in_intron	9148627	9148627	+	asmbl_8822	none	blat.proc3829877.chain_3439	1	STRG.14908.1,blat.proc3829877.chain_3438,blat.proc3829877.chain_3441	3
scaffold_18	alternate_exon	8593264	8593474	+	asmbl_20873	none	STRG.21515.3	1	STRG.21515.2	1
scaffold_11	alternate_exon	8431858	8434187	+	asmbl_5732	none	STRG.13849.1,Trinity_GG_7631_c0_g2_i1,blat.proc3829877.chain_2331	3	STRG.13849.2,Trinity_GG_7631_c0_g1_i3,blat.proc3829877.chain_2325	3
scaffold_4	alt_acceptor	13076060	13076061	+	asmbl_43108,asmbl_43109,asmbl_43110,asmbl_43111,asmbl_43112,asmbl_43113	none	STRG.4945.1,STRG.4945.3,STRG.4945.4,STRG.4945.5,blat.proc3829873.chain_1237,blat.proc3829873.chain_1238,blat.proc3829873.chain_1239,blat.proc3829873.chain_1240	8	STRG.4945.2	1
scaffold_24	ends_in_intron	9091588	9091588	+	asmbl_32506	none	blat.proc3829885.chain_81	1	STRG.26930.1,STRG.26930.2,STRG.26930.3,STRG.26930.4,blat.proc3829885.chain_82,blat.proc3829885.chain_84	6
scaffold_5	retained_intron	16206282	16206377	+	asmbl_44718	none	blat.proc3829873.chain_2888	1	STRG.6800.2	1
scaffold_8	starts_in_intron	8180347	8180347	+	asmbl_51992	none	blat.proc3829875.chain_2572	1	STRG.10093.1,STRG.10093.2,STRG.10093.3,STRG.10093.4,blat.proc3829875.chain_2575	5
scaffold_9	retained_exon	16346812	16347045	-	asmbl_55531	none	STRG.11780.1,blat.proc3829893.chain_144	2	STRG.11780.2	1
scaffold_13	ends_in_intron	2293350	2293350	+	asmbl_10559	none	blat.proc3829879.chain_259	1	STRG.15531.1,blat.proc3829879.chain_256,blat.proc3829879.chain_257,blat.proc3829879.chain_258	4
scaffold_12	retained_intron	7392698	7392862	-	asmbl_7706	none	blat.proc3829893.chain_3229	1	STRG.14814.1,blat.proc3829893.chain_3231	2
scaffold_8	skipped_exon	11848560	11850658	+	asmbl_52269,asmbl_52270,asmbl_52274,asmbl_52277,asmbl_52280,asmbl_52281,asmbl_52282,asmbl_52283	none	STRG.10382.3,blat.proc3829875.chain_2967,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2975,blat.proc3829875.chain_2976,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978,blat.proc3829875.chain_2979	9	blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970	3
scaffold_12	ends_in_intron	7276338	7276338	-	asmbl_7696	none	Trinity_GG_25259_c0_g1_i4,blat.proc3829893.chain_3174	2	STRG.14787.1,STRG.14787.2,STRG.14787.3,Trinity_GG_25259_c0_g1_i1,Trinity_GG_25259_c0_g1_i3,blat.proc3829893.chain_3176,blat.proc3829893.chain_3177	7
scaffold_21	alternate_exon	7952041	7952104	-	asmbl_27893	none	STRG.24316.2	1	STRG.24316.1,blat.proc3829899.chain_1375	2
scaffold_21	retained_exon	9925221	9925340	-	asmbl_28014	none	STRG.24446.6	1	STRG.24446.5	1
scaffold_14	alternate_exon	4116227	4116418	+	asmbl_11946	none	STRG.16951.2,Trinity_GG_9333_c0_g1_i7,blat.proc3829879.chain_1689	3	STRG.16951.1,Trinity_GG_9333_c0_g1_i5,blat.proc3829879.chain_1691	3
scaffold_1	starts_in_intron	6496129	6496129	-	asmbl_373	none	blat.proc3829887.chain_245	1	STRG.443.1,STRG.443.2,blat.proc3829887.chain_246,blat.proc3829887.chain_247	4
scaffold_1	alternate_exon	9962780	9963923	-	asmbl_577	none	STRG.662.1,blat.proc3829887.chain_589	2	STRG.662.2,blat.proc3829887.chain_590,blat.proc3829887.chain_591	3
scaffold_8	starts_in_intron	2852118	2852118	-	asmbl_52713	none	blat.proc3829891.chain_1947	1	STRG.9800.1,STRG.9800.2,blat.proc3829891.chain_1948,blat.proc3829891.chain_1949	4
scaffold_8	skipped_exon	17311618	17313674	-	asmbl_53452	none	STRG.10645.2,blat.proc3829891.chain_2806	2	STRG.10645.5,blat.proc3829891.chain_2805	2
scaffold_15	retained_intron	13327077	13327471	+	asmbl_14573,asmbl_14574,asmbl_14575,asmbl_14577,asmbl_14578,asmbl_14579,asmbl_14580,asmbl_14581,asmbl_14582	none	Trinity_GG_10264_c0_g1_i2,Trinity_GG_10264_c0_g1_i4,Trinity_GG_10264_c0_g1_i6,blat.proc3829879.chain_3296,blat.proc3829879.chain_3297,blat.proc3829879.chain_3298,blat.proc3829879.chain_3299,blat.proc3829879.chain_3300,blat.proc3829879.chain_3301,blat.proc3829879.chain_3302,blat.proc3829879.chain_3303,blat.proc3829879.chain_3304	12	STRG.18763.1	1
scaffold_24	alt_acceptor	4327675	4327676	+	asmbl_32205	none	STRG.26581.1	1	STRG.26581.2	1
scaffold_9	alternate_exon	16354180	16354239	-	asmbl_55533	none	STRG.11781.1,Trinity_GG_23478_c0_g1_i1,blat.proc3829893.chain_77	3	STRG.11781.2	1
scaffold_7	retained_intron	12451061	12451154	-	asmbl_50050	none	Trinity_GG_22282_c1_g1_i3,blat.proc3829891.chain_1613	2	Trinity_GG_22282_c1_g1_i12,blat.proc3829891.chain_1610	2
scaffold_27	retained_intron	7449983	7450375	+	asmbl_36408	none	STRG.29084.1,Trinity_GG_16053_c1_g1_i2,blat.proc3829885.chain_2138	3	blat.proc3829885.chain_2137	1
scaffold_15	starts_in_intron	14592641	14592641	-	asmbl_15747	none	blat.proc3829895.chain_3639	1	STRG.18865.1,blat.proc3829895.chain_3640	2
scaffold_22	ends_in_intron	11509915	11509915	+	asmbl_29686	none	blat.proc3829883.chain_2351	1	STRG.25474.1	1
scaffold_26	starts_in_intron	5893721	5893721	-	asmbl_34916	none	blat.proc3829901.chain_1393	1	STRG.28281.1,STRG.28281.2,STRG.28281.3,blat.proc3829901.chain_1394,blat.proc3829901.chain_1395,blat.proc3829901.chain_1396	6
scaffold_14	retained_intron	2122954	2123146	-	asmbl_12901	none	blat.proc3829895.chain_1530	1	STRG.16822.1,Trinity_GG_26440_c0_g1_i4,Trinity_GG_26440_c0_g1_i5,Trinity_GG_26440_c0_g1_i7,blat.proc3829895.chain_1526,blat.proc3829895.chain_1528,blat.proc3829895.chain_1529	7
scaffold_25	alternate_exon	2146346	2146490	+	asmbl_33384	none	STRG.27192.1,blat.proc3829885.chain_245	2	STRG.27192.2	1
scaffold_395	skipped_exon	3031	4016	-	asmbl_41033	none	STRG.30280.2	1	STRG.30280.1,blat.proc3829901.chain_3348	2
scaffold_11	alternate_exon	8708129	8708261	-	asmbl_6849	none	STRG.13885.1,Trinity_GG_24761_c1_g1_i1,blat.proc3829893.chain_2301	3	STRG.13885.2	1
scaffold_5	retained_intron	18265468	18265781	+	asmbl_44896,asmbl_44898	none	blat.proc3829873.chain_3105,blat.proc3829873.chain_3106	2	STRG.6959.1,STRG.6959.2,Trinity_GG_3828_c0_g1_i3,blat.proc3829873.chain_3103,blat.proc3829873.chain_3104,blat.proc3829873.chain_3107,blat.proc3829873.chain_3109	7
scaffold_6	spliced_intron	5753989	5754213	+	asmbl_46916,asmbl_46917	none	STRG.7525.2,blat.proc3829873.chain_3644,blat.proc3829873.chain_3647	3	STRG.7525.1,Trinity_GG_4120_c0_g1_i1,blat.proc3829873.chain_3645,blat.proc3829873.chain_3646	4
scaffold_15	alternate_exon	11495532	11496454	-	asmbl_15532,asmbl_15533	none	STRG.18603.1,blat.proc3829895.chain_3384,blat.proc3829895.chain_3386,blat.proc3829895.chain_3387	4	STRG.18603.2	1
scaffold_340	alternate_exon	4445	4605	+	asmbl_40970	none	STRG.30268.1	1	Trinity_GG_16762_c0_g1_i1,blat.proc3829885.chain_3305	2
scaffold_20	alt_acceptor	11672168	11672169	-	asmbl_27099	none	STRG.23656.4,blat.proc3829899.chain_653	2	STRG.23656.1,STRG.23656.3,blat.proc3829899.chain_650,blat.proc3829899.chain_651,blat.proc3829899.chain_652	5
scaffold_8	alt_acceptor	16401127	16401128	-	asmbl_53396,asmbl_53399	none	blat.proc3829891.chain_2685,blat.proc3829891.chain_2688	2	STRG.10619.1,STRG.10619.2,blat.proc3829891.chain_2683,blat.proc3829891.chain_2684,blat.proc3829891.chain_2686,blat.proc3829891.chain_2687,blat.proc3829891.chain_2689,blat.proc3829891.chain_2691	8
scaffold_26	retained_intron	9843220	9843299	+	asmbl_35805	none	blat.proc3829885.chain_1566	1	STRG.28526.3,blat.proc3829885.chain_1560	2
scaffold_12	retained_exon	10187771	10187904	-	asmbl_7858,asmbl_7861	none	STRG.14979.5,STRG.14979.6,blat.proc3829893.chain_3400	3	STRG.14979.1,STRG.14979.2,blat.proc3829893.chain_3401,blat.proc3829893.chain_3403,blat.proc3829893.chain_3405	5
scaffold_21	alternate_exon	7726376	7726557	+	asmbl_28781	none	STRG.24301.4	1	STRG.24301.1,STRG.24301.2,blat.proc3829883.chain_1449	3
scaffold_12	skipped_exon	10004094	10004735	-	asmbl_7841	none	STRG.14963.2,blat.proc3829893.chain_3284	2	STRG.14963.1,STRG.14963.3	2
scaffold_24	retained_intron	10480275	10480714	+	asmbl_32568	none	blat.proc3829885.chain_116	1	STRG.26999.1,STRG.26999.3,blat.proc3829885.chain_114,blat.proc3829885.chain_115	4
scaffold_6	retained_exon	3041413	3042317	-	asmbl_48165	none	STRG.7302.3,blat.proc3829889.chain_3316	2	STRG.7302.1,blat.proc3829889.chain_3319	2
scaffold_7	starts_in_intron	16826479	16826479	-	asmbl_50238	none	blat.proc3829891.chain_1833	1	STRG.9586.1,blat.proc3829891.chain_1834	2
scaffold_11	alt_donor	10001740	10001741	-	asmbl_6952	none	STRG.14015.1,blat.proc3829893.chain_2434	2	blat.proc3829893.chain_2435	1
scaffold_20	retained_intron	967202	967345	+	asmbl_25549	none	STRG.22792.2,Trinity_GG_12589_c0_g1_i4	2	STRG.22792.1	1
scaffold_6	retained_exon	2484402	2484433	+	asmbl_46702,asmbl_46704	none	STRG.7239.3,blat.proc3829873.chain_3416	2	STRG.7239.1,blat.proc3829873.chain_3414	2
scaffold_21	retained_intron	3015285	3015391	+	asmbl_28457	none	blat.proc3829883.chain_1068	1	STRG.23914.2,blat.proc3829883.chain_1069,blat.proc3829883.chain_1070,blat.proc3829883.chain_1071	4
scaffold_15	starts_in_intron	8986684	8986684	+	asmbl_14321	none	blat.proc3829879.chain_3026	1	STRG.18435.1,STRG.18435.2,blat.proc3829879.chain_3025,blat.proc3829879.chain_3027,blat.proc3829879.chain_3028	5
scaffold_18	alt_acceptor	4570745	4570746	+	asmbl_20562	none	blat.proc3829881.chain_2153	1	STRG.21237.2	1
scaffold_9	alt_acceptor	571247	571248	+	asmbl_53750	none	STRG.10779.3	1	STRG.10779.2	1
scaffold_16	starts_in_intron	294545	294545	-	asmbl_16016	none	STRG.19013.2,blat.proc3829897.chain_52	2	STRG.19013.1,blat.proc3829897.chain_50	2
scaffold_16	alt_acceptor	146816	146817	-	asmbl_16002,asmbl_16009,asmbl_16011	none	Trinity_GG_27691_c0_g1_i3,Trinity_GG_27691_c0_g1_i4,Trinity_GG_27691_c0_g1_i7,blat.proc3829897.chain_66,blat.proc3829897.chain_69	5	STRG.19000.1,Trinity_GG_27691_c0_g1_i8	2
scaffold_19	retained_intron	11484684	11484870	-	asmbl_21619,asmbl_21621,asmbl_21623	none	blat.proc3829897.chain_3184,blat.proc3829897.chain_3192,blat.proc3829897.chain_3193	3	STRG.22477.1,STRG.22477.3,blat.proc3829897.chain_3181,blat.proc3829897.chain_3182,blat.proc3829897.chain_3187	5
scaffold_4	alt_donor	1334256	1334257	-	asmbl_41109,asmbl_41110,asmbl_41112	none	STRG.4173.3,STRG.4173.4,blat.proc3829889.chain_299,blat.proc3829889.chain_302	4	STRG.4173.2,STRG.4173.5,blat.proc3829889.chain_300,blat.proc3829889.chain_301	4
scaffold_8	retained_intron	11857014	11857183	-	asmbl_53170	none	blat.proc3829891.chain_2449	1	STRG.10383.1,blat.proc3829891.chain_2448	2
scaffold_5	spliced_intron	11016319	11016635	-	asmbl_45781	none	STRG.6371.3	1	STRG.6371.2,blat.proc3829889.chain_2475	2
scaffold_7	alt_acceptor	12053882	12053883	+	asmbl_51084,asmbl_51088	none	STRG.9298.1,STRG.9298.2,blat.proc3829875.chain_1756	3	Trinity_GG_5159_c0_g1_i4,blat.proc3829875.chain_1757	2
scaffold_28	retained_intron	9225871	9225909	-	asmbl_37826,asmbl_37828	none	STRG.29944.1,STRG.29944.2,Trinity_GG_33803_c0_g1_i2,blat.proc3829901.chain_3060	4	Trinity_GG_33803_c0_g1_i1,blat.proc3829901.chain_3059	2
scaffold_1	spliced_intron	6299655	6299772	-	asmbl_354,asmbl_355,asmbl_357	none	STRG.424.2,STRG.424.5,blat.proc3829887.chain_303,blat.proc3829887.chain_306	4	STRG.424.1,STRG.424.3,blat.proc3829887.chain_304,blat.proc3829887.chain_307	4
scaffold_7	alternate_exon	2705681	2705762	-	asmbl_49582	none	STRG.8688.1,blat.proc3829891.chain_1043	2	STRG.8688.2	1
scaffold_14	retained_exon	8231791	8231817	-	asmbl_13247	none	blat.proc3829895.chain_1921	1	STRG.17225.2,blat.proc3829895.chain_1919,blat.proc3829895.chain_1920	3
scaffold_4	alt_donor	4433640	4433641	+	asmbl_42598	none	STRG.4341.2,blat.proc3829873.chain_730	2	STRG.4341.3	1
scaffold_6	alt_donor	14934097	14934098	-	asmbl_48981	none	STRG.8260.2	1	STRG.8260.1,blat.proc3829891.chain_559	2
scaffold_13	spliced_intron	3733822	3733964	+	asmbl_10710,asmbl_10711,asmbl_10713	none	STRG.15686.2,blat.proc3829879.chain_392	2	blat.proc3829879.chain_389,blat.proc3829879.chain_393	2
scaffold_23	alternate_exon	2308053	2311792	+	asmbl_30685	none	STRG.25687.1,Trinity_GG_14170_c0_g1_i1,blat.proc3829883.chain_2529,blat.proc3829883.chain_2559	4	STRG.25687.2,Trinity_GG_14156_c0_g1_i4,blat.proc3829883.chain_2533	3
scaffold_19	spliced_intron	11470827	11471462	-	asmbl_21605	none	STRG.22470.4,blat.proc3829897.chain_3162	2	STRG.22470.1,STRG.22470.2,blat.proc3829897.chain_3161,blat.proc3829897.chain_3163	4
scaffold_25	spliced_intron	3820300	3820402	-	asmbl_34140,asmbl_34141	none	STRG.27321.1,STRG.27321.2,Trinity_GG_32309_c0_g1_i2,blat.proc3829901.chain_622	4	Trinity_GG_32309_c0_g1_i1,blat.proc3829901.chain_621	2
scaffold_5	alt_acceptor	988901	988902	-	asmbl_45198,asmbl_45199	none	STRG.5644.1,blat.proc3829889.chain_1764,blat.proc3829889.chain_1765	3	STRG.5644.2,STRG.5644.3,STRG.5644.4	3
scaffold_9	spliced_intron	17790249	17790655	-	asmbl_55643,asmbl_55646	none	STRG.11857.1,Trinity_GG_23527_c0_g1_i1,blat.proc3829893.chain_162	3	STRG.11857.2,Trinity_GG_23527_c0_g1_i2,blat.proc3829893.chain_161,blat.proc3829893.chain_163	4
scaffold_9	retained_intron	6902292	6902430	-	asmbl_55050,asmbl_55055,asmbl_55058	none	STRG.11191.3,blat.proc3829891.chain_3366,blat.proc3829891.chain_3374	3	STRG.11191.1,STRG.11191.2,STRG.11191.4,STRG.11191.5,blat.proc3829891.chain_3367,blat.proc3829891.chain_3368,blat.proc3829891.chain_3369,blat.proc3829891.chain_3370,blat.proc3829891.chain_3371,blat.proc3829891.chain_3372,blat.proc3829891.chain_3373,blat.proc3829891.chain_3375	12
scaffold_11	alt_donor	13683097	13683098	+	asmbl_6048	none	STRG.14212.1,blat.proc3829877.chain_2697	2	STRG.14212.2	1
scaffold_19	spliced_intron	2696720	2696863	+	asmbl_22073	none	STRG.21943.1	1	Trinity_GG_12138_c0_g1_i1	1
scaffold_4	alternate_exon	17579217	17579236	+	asmbl_43402	none	STRG.5347.2	1	STRG.5347.1	1
scaffold_19	alternate_exon	7582390	7583118	+	asmbl_22280,asmbl_22284	none	STRG.22230.3,Trinity_GG_12292_c0_g1_i5,blat.proc3829881.chain_3172	3	STRG.22230.1,STRG.22230.2,blat.proc3829881.chain_3168,blat.proc3829881.chain_3171	4
scaffold_10	spliced_intron	3732047	3732294	+	asmbl_4345,asmbl_4346	none	STRG.12193.1,STRG.12193.2,blat.proc3829877.chain_869,blat.proc3829877.chain_872	4	blat.proc3829877.chain_871	1
scaffold_22	spliced_intron	11402361	11402463	+	asmbl_29667	none	STRG.25459.1	1	Trinity_GG_14029_c0_g1_i1,Trinity_GG_14029_c0_g1_i4,blat.proc3829883.chain_2342,blat.proc3829883.chain_2344	4
scaffold_10	alt_donor	337691	337692	-	asmbl_2850,asmbl_2852,asmbl_2853,asmbl_2854	none	STRG.11909.1,STRG.11909.2,STRG.11909.3,Trinity_GG_23632_c0_g1_i4,blat.proc3829893.chain_340,blat.proc3829893.chain_341,blat.proc3829893.chain_342,blat.proc3829893.chain_343	8	STRG.11909.4	1
scaffold_16	retained_exon	8584929	8585014	+	asmbl_17208,asmbl_17209,asmbl_17210,asmbl_17212,asmbl_17216,asmbl_17218,asmbl_17219	none	STRG.19477.1,STRG.19477.2,STRG.19477.3,STRG.19477.5,STRG.19477.7,STRG.19477.8,Trinity_GG_10676_c0_g1_i5,blat.proc3829881.chain_353,blat.proc3829881.chain_355,blat.proc3829881.chain_358,blat.proc3829881.chain_359	11	STRG.19477.4,STRG.19477.6,blat.proc3829881.chain_354,blat.proc3829881.chain_357	4
scaffold_7	starts_in_intron	12340018	12340018	-	asmbl_50007	none	Trinity_GG_22236_c0_g1_i1,blat.proc3829891.chain_1506	2	STRG.9319.1,blat.proc3829891.chain_1505	2
scaffold_19	starts_in_intron	11411084	11411084	+	asmbl_22502	none	Trinity_GG_12427_c0_g1_i3,blat.proc3829881.chain_3401	2	STRG.22463.1,blat.proc3829881.chain_3402,blat.proc3829881.chain_3403	3
scaffold_24	alt_donor	6728237	6728238	-	asmbl_32959	none	blat.proc3829901.chain_25	1	STRG.26704.1,STRG.26704.2,blat.proc3829901.chain_20,blat.proc3829901.chain_21,blat.proc3829901.chain_22,blat.proc3829901.chain_23	6
scaffold_15	retained_intron	12748286	12748489	+	asmbl_14543	none	blat.proc3829879.chain_3352	1	STRG.18731.1,STRG.18731.2,STRG.18731.3,STRG.18731.4,blat.proc3829879.chain_3350,blat.proc3829879.chain_3351,blat.proc3829879.chain_3353	7
scaffold_14	alt_donor	11341170	11341171	-	asmbl_13455,asmbl_13457	none	STRG.17450.2,blat.proc3829895.chain_2082,blat.proc3829895.chain_2083	3	STRG.17450.1	1
scaffold_24	alternate_exon	7864325	7864372	-	asmbl_33064	none	blat.proc3829901.chain_130	1	STRG.26822.2,blat.proc3829901.chain_132	2
scaffold_8	spliced_intron	16142261	16142410	-	asmbl_53372	none	blat.proc3829891.chain_2745	1	blat.proc3829891.chain_2742	1
scaffold_7	alternate_exon	8172976	8173173	+	asmbl_50846	none	Trinity_GG_5002_c0_g1_i1,blat.proc3829875.chain_1468	2	STRG.9039.1,blat.proc3829875.chain_1470	2
scaffold_9	alt_acceptor	3411468	3411469	-	asmbl_54865,asmbl_54869	none	STRG.10946.1,blat.proc3829891.chain_3121	2	STRG.10946.3,blat.proc3829891.chain_3122,blat.proc3829891.chain_3124	3
scaffold_1	spliced_intron	12564359	12564465	+	asmbl_2218	none	STRG.865.1,blat.proc3829871.chain_968	2	blat.proc3829871.chain_967	1
scaffold_1	alternate_exon	12051869	12052029	-	asmbl_688	none	STRG.819.4	1	STRG.819.1,STRG.819.2,STRG.819.3	3
scaffold_11	ends_in_intron	15102185	15102185	-	asmbl_7161	none	blat.proc3829893.chain_2691	1	STRG.14262.1,blat.proc3829893.chain_2692	2
scaffold_24	retained_intron	6432023	6432478	-	asmbl_32949	none	blat.proc3829899.chain_3723	1	STRG.26677.2	1
scaffold_8	spliced_intron	7804828	7805076	-	asmbl_52915,asmbl_52916,asmbl_52919	none	STRG.10090.1,blat.proc3829891.chain_2143,blat.proc3829891.chain_2145,blat.proc3829891.chain_2147	4	blat.proc3829891.chain_2144	1
scaffold_5	alt_acceptor	12636882	12636883	+	asmbl_44479	none	STRG.6490.2	1	STRG.6490.1,blat.proc3829873.chain_2634	2
scaffold_1	alternate_exon	9176498	9176582	-	asmbl_529	none	STRG.606.2	1	STRG.606.1,blat.proc3829887.chain_518	2
scaffold_7	retained_intron	4884544	4884813	+	asmbl_50636	none	STRG.8824.1,blat.proc3829875.chain_1240	2	STRG.8824.2,blat.proc3829875.chain_1237,blat.proc3829875.chain_1239	3
scaffold_21	starts_in_intron	8006363	8006363	+	asmbl_28796	none	blat.proc3829883.chain_1465	1	STRG.24326.1,STRG.24326.2,blat.proc3829883.chain_1460,blat.proc3829883.chain_1461,blat.proc3829883.chain_1463	5
scaffold_13	alt_acceptor	2354608	2354609	+	asmbl_10588,asmbl_10590	none	STRG.15543.3,STRG.15543.6	2	STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161,blat.proc3829879.chain_162	10
scaffold_7	starts_in_intron	5315354	5315354	+	asmbl_50694	none	Trinity_GG_4877_c0_g1_i2,blat.proc3829875.chain_1271	2	STRG.8858.1,blat.proc3829875.chain_1272	2
scaffold_1	spliced_intron	10414454	10414991	-	asmbl_595	none	STRG.680.4	1	Trinity_GG_17393_c0_g2_i1,blat.proc3829887.chain_610	2
scaffold_20	alt_acceptor	2403441	2403442	+	asmbl_25641	none	STRG.22962.2,blat.proc3829883.chain_93	2	blat.proc3829883.chain_91	1
scaffold_19	alt_acceptor	7501375	7501376	+	asmbl_22264	none	STRG.22217.1,blat.proc3829881.chain_3142	2	STRG.22217.2	1
scaffold_26	skipped_exon	3672079	3673128	+	asmbl_35342	none	blat.proc3829885.chain_1029	1	STRG.28032.1,blat.proc3829885.chain_1030,blat.proc3829885.chain_1032,blat.proc3829885.chain_1033	4
scaffold_19	alt_donor	11475479	11475480	-	asmbl_21609	none	STRG.22467.1	1	STRG.22467.2,STRG.22467.3	2
scaffold_8	alt_acceptor	1127412	1127413	+	asmbl_51673	none	STRG.9742.3	1	STRG.9742.1	1
scaffold_22	alt_acceptor	215204	215205	+	asmbl_29116	none	STRG.24661.4	1	STRG.24661.6	1
scaffold_7	spliced_intron	1233710	1235447	+	asmbl_50474,asmbl_50476,asmbl_50477,asmbl_50478	none	STRG.8627.3,STRG.8627.7,STRG.8627.9,Trinity_GG_4740_c0_g1_i16,blat.proc3829875.chain_1042	5	STRG.8627.2,STRG.8627.8,Trinity_GG_4740_c0_g1_i15,blat.proc3829875.chain_1049,blat.proc3829875.chain_1052	5
scaffold_3	starts_in_intron	16444283	16444283	+	asmbl_40583	none	Trinity_GG_2198_c0_g1_i4,blat.proc3829873.chain_307	2	STRG.3919.1,STRG.3919.2,STRG.3919.3,blat.proc3829873.chain_305,blat.proc3829873.chain_306	5
scaffold_11	alt_donor	1606309	1606310	-	asmbl_6419	none	STRG.13326.2	1	STRG.13326.1	1
scaffold_21	alternate_exon	10008912	10010472	-	asmbl_28024	none	STRG.24450.1,blat.proc3829899.chain_1490	2	blat.proc3829899.chain_1491	1
scaffold_26	spliced_intron	5045239	5045524	+	asmbl_35463,asmbl_35464,asmbl_35466,asmbl_35470,asmbl_35476,asmbl_35478,asmbl_35481	none	STRG.28206.1,blat.proc3829885.chain_1156,blat.proc3829885.chain_1159,blat.proc3829885.chain_1167,blat.proc3829885.chain_1168,blat.proc3829885.chain_1169,blat.proc3829885.chain_1170	7	blat.proc3829885.chain_1157,blat.proc3829885.chain_1163	2
scaffold_1	skipped_exon	15280374	15281792	+	asmbl_2415	none	STRG.1091.2,blat.proc3829871.chain_1167	2	STRG.1091.1	1
scaffold_12	spliced_intron	6526646	6526749	-	asmbl_7673,asmbl_7675	none	STRG.14739.1,STRG.14739.2,blat.proc3829893.chain_3130	3	blat.proc3829893.chain_3129	1
scaffold_21	alternate_exon	1175749	1175860	-	asmbl_27414	none	STRG.23778.4,blat.proc3829899.chain_855	2	STRG.23778.2,Trinity_GG_30262_c0_g1_i3,blat.proc3829899.chain_857	3
scaffold_13	spliced_intron	12104495	12104907	+	asmbl_11315	none	STRG.16334.1,Trinity_GG_8989_c0_g1_i1,blat.proc3829879.chain_1102	3	STRG.16334.2,Trinity_GG_8989_c0_g1_i3,blat.proc3829879.chain_1101	3
scaffold_5	alt_acceptor	10983815	10983816	+	asmbl_44391	none	STRG.6368.2	1	STRG.6368.1	1
scaffold_5	ends_in_intron	13789123	13789123	-	asmbl_45935	none	Trinity_GG_20657_c0_g2_i1,blat.proc3829889.chain_2566	2	STRG.6581.1	1
scaffold_1	alternate_exon	12746050	12750834	-	asmbl_758	none	STRG.892.1,blat.proc3829887.chain_754	2	STRG.892.3,STRG.892.4,blat.proc3829887.chain_755	3
scaffold_22	starts_in_intron	6128255	6128255	+	asmbl_29388	none	STRG.24955.6,Trinity_GG_13800_c1_g2_i2,blat.proc3829883.chain_2004	3	STRG.24955.3,STRG.24955.4,blat.proc3829883.chain_1996,blat.proc3829883.chain_1998,blat.proc3829883.chain_1999,blat.proc3829883.chain_2002	6
scaffold_10	alt_acceptor	13285471	13285472	-	asmbl_3774	none	blat.proc3829893.chain_1433	1	STRG.12910.4,blat.proc3829893.chain_1435	2
scaffold_24	skipped_exon	7099268	7100129	+	asmbl_32374	none	STRG.26741.2	1	STRG.26741.1	1
scaffold_2	alt_donor	4774296	4774297	-	asmbl_23121	none	STRG.1898.1,blat.proc3829887.chain_1743	2	STRG.1898.2,blat.proc3829887.chain_1744	2
scaffold_14	spliced_intron	6596360	6596436	+	asmbl_12069	none	Trinity_GG_9390_c0_g1_i1,blat.proc3829879.chain_1791	2	Trinity_GG_9390_c0_g1_i2,blat.proc3829879.chain_1790	2
scaffold_24	retained_intron	9121547	9121853	+	asmbl_32518	none	blat.proc3829885.chain_21,blat.proc3829885.chain_23	2	STRG.26917.1,Trinity_GG_14864_c0_g1_i4,blat.proc3829885.chain_20	3
scaffold_10	spliced_intron	8895840	8895918	-	asmbl_3532,asmbl_3533,asmbl_3535,asmbl_3536,asmbl_3537,asmbl_3538,asmbl_3539,asmbl_3540,asmbl_3541	none	STRG.12629.1,blat.proc3829893.chain_1125,blat.proc3829893.chain_1127,blat.proc3829893.chain_1129,blat.proc3829893.chain_1132,blat.proc3829893.chain_1133,blat.proc3829893.chain_1134,blat.proc3829893.chain_1135,blat.proc3829893.chain_1136	9	blat.proc3829893.chain_1130,blat.proc3829893.chain_1131	2
scaffold_11	spliced_intron	17084164	17084320	-	asmbl_7228,asmbl_7229	none	STRG.14362.5,blat.proc3829893.chain_2768	2	STRG.14362.1,STRG.14362.2,STRG.14362.3,STRG.14362.4,blat.proc3829893.chain_2767,blat.proc3829893.chain_2771,blat.proc3829893.chain_2772	7
scaffold_23	ends_in_intron	10974588	10974588	+	asmbl_31190	none	blat.proc3829883.chain_3205	1	STRG.26281.1,STRG.26281.2,blat.proc3829883.chain_3195,blat.proc3829883.chain_3196,blat.proc3829883.chain_3198,blat.proc3829883.chain_3199,blat.proc3829883.chain_3200	7
scaffold_2	alternate_exon	13907298	13908091	-	asmbl_23549,asmbl_23552,asmbl_23553,asmbl_23555	none	STRG.2382.1,blat.proc3829887.chain_2287,blat.proc3829887.chain_2288,blat.proc3829887.chain_2289,blat.proc3829887.chain_2290	5	STRG.2382.2	1
scaffold_13	starts_in_intron	14882138	14882138	-	asmbl_10181	none	blat.proc3829895.chain_1234	1	STRG.16521.1,Trinity_GG_26256_c0_g1_i2,blat.proc3829895.chain_1233	3
scaffold_26	alt_donor	3428029	3428030	-	asmbl_34767	none	STRG.28004.1,blat.proc3829901.chain_1238	2	STRG.28004.2,blat.proc3829901.chain_1239	2
scaffold_8	skipped_exon	11297094	11298140	+	asmbl_52204,asmbl_52205	none	STRG.10336.1,STRG.10336.2,Trinity_GG_5757_c0_g1_i2,Trinity_GG_5757_c0_g1_i3,blat.proc3829875.chain_2855,blat.proc3829875.chain_2857	6	STRG.10336.3,Trinity_GG_5757_c0_g1_i1,Trinity_GG_5757_c0_g1_i4,blat.proc3829875.chain_2856,blat.proc3829875.chain_2858	5
scaffold_13	spliced_intron	381828	381913	-	asmbl_9292	none	STRG.15421.4,blat.proc3829895.chain_150	2	STRG.15421.2,blat.proc3829895.chain_151	2
scaffold_19	starts_in_intron	5641130	5641130	-	asmbl_21389	none	blat.proc3829897.chain_2913	1	blat.proc3829897.chain_2910,blat.proc3829897.chain_2911	2
scaffold_6	starts_in_intron	5196334	5196334	+	asmbl_46859,asmbl_46860,asmbl_46867	none	STRG.7489.5,blat.proc3829873.chain_3586,blat.proc3829873.chain_3589	3	STRG.7489.2,STRG.7489.3,STRG.7489.4,Trinity_GG_4091_c0_g1_i10,blat.proc3829873.chain_3581,blat.proc3829873.chain_3583,blat.proc3829873.chain_3585,blat.proc3829873.chain_3587	8
scaffold_7	spliced_intron	8507767	8510079	+	asmbl_50887	none	STRG.9068.1,blat.proc3829875.chain_1527	2	STRG.9068.2,blat.proc3829875.chain_1530	2
scaffold_24	retained_intron	3655652	3655776	+	asmbl_32168	none	blat.proc3829883.chain_3404	1	STRG.26528.1,STRG.26528.2,STRG.26528.3,STRG.26528.4,STRG.26528.5,STRG.26528.6,Trinity_GG_14654_c0_g1_i1,Trinity_GG_14654_c0_g1_i10,Trinity_GG_14654_c0_g1_i3,Trinity_GG_14654_c0_g1_i7,blat.proc3829883.chain_3402,blat.proc3829883.chain_3403,blat.proc3829883.chain_3406,blat.proc3829883.chain_3407,blat.proc3829883.chain_3408,blat.proc3829883.chain_3409	16
scaffold_7	starts_in_intron	3414151	3414151	-	asmbl_49609	none	STRG.8743.2	1	blat.proc3829891.chain_1123	1
scaffold_4	alternate_exon	13763116	13763615	-	asmbl_41750	none	blat.proc3829889.chain_1049	1	STRG.4997.2,blat.proc3829889.chain_1048	2
scaffold_5	alternate_exon	4773758	4773944	-	asmbl_45400	none	STRG.5933.4	1	STRG.5933.2,blat.proc3829889.chain_2043	2
scaffold_6	ends_in_intron	2484199	2484199	+	asmbl_46703	none	blat.proc3829873.chain_3415	1	STRG.7239.1,STRG.7239.3,blat.proc3829873.chain_3414,blat.proc3829873.chain_3416	4
scaffold_13	alt_acceptor	89902	89903	+	asmbl_10427	none	STRG.15412.4	1	STRG.15412.1,STRG.15412.2,STRG.15412.3,blat.proc3829879.chain_80,blat.proc3829879.chain_81	5
scaffold_16	alternate_exon	11952951	11953101	+	asmbl_17421	none	STRG.19712.2,Trinity_GG_10805_c0_g1_i2,blat.proc3829881.chain_579	3	STRG.19712.1,Trinity_GG_10805_c0_g1_i3,blat.proc3829881.chain_578	3
scaffold_7	spliced_intron	18615646	18615841	-	asmbl_50305	none	blat.proc3829891.chain_1918	1	STRG.9671.1,blat.proc3829891.chain_1916	2
scaffold_26	alternate_exon	434067	435136	+	asmbl_35214	none	blat.proc3829885.chain_868	1	blat.proc3829885.chain_867	1
scaffold_3	starts_in_intron	6189687	6189687	-	asmbl_38867	none	STRG.3262.4	1	blat.proc3829887.chain_3012	1
scaffold_28	retained_intron	9808981	9809004	+	asmbl_38505	none	STRG.29985.1,Trinity_GG_16595_c0_g1_i1,blat.proc3829885.chain_3049	3	STRG.29985.2	1
scaffold_4	alt_acceptor	4420004	4420005	+	asmbl_42595	none	STRG.4339.2	1	STRG.4339.1,STRG.4339.3,Trinity_GG_2416_c0_g1_i3,blat.proc3829873.chain_727	4
scaffold_17	alternate_exon	6797911	6799713	+	asmbl_18001,asmbl_18002	none	STRG.20322.1,STRG.20322.2,blat.proc3829881.chain_1106,blat.proc3829881.chain_1107	4	STRG.20322.3	1
scaffold_14	retained_intron	2375443	2375890	-	asmbl_12913,asmbl_12914,asmbl_12917,asmbl_12921	none	STRG.16839.2,STRG.16839.6,Trinity_GG_26463_c0_g1_i6,blat.proc3829895.chain_1585,blat.proc3829895.chain_1587,blat.proc3829895.chain_1588	6	STRG.16839.1,STRG.16839.3,STRG.16839.4,blat.proc3829895.chain_1579,blat.proc3829895.chain_1580	5
scaffold_21	retained_intron	5169771	5169934	-	asmbl_27649	none	blat.proc3829899.chain_1128	1	STRG.24038.1,blat.proc3829899.chain_1129,blat.proc3829899.chain_1132,blat.proc3829899.chain_1134	4
scaffold_4	spliced_intron	13075747	13075881	+	asmbl_43112	none	STRG.4945.5	1	STRG.4945.1,STRG.4945.2,STRG.4945.3,STRG.4945.4,blat.proc3829873.chain_1237,blat.proc3829873.chain_1238,blat.proc3829873.chain_1239,blat.proc3829873.chain_1240	8
scaffold_1	alt_acceptor	19044608	19044609	+	asmbl_2565	none	blat.proc3829871.chain_1392,blat.proc3829871.chain_1393	2	STRG.1337.3,STRG.1337.4	2
scaffold_21	starts_in_intron	10983471	10983471	+	asmbl_28919	none	blat.proc3829883.chain_1591	1	STRG.24568.1,blat.proc3829883.chain_1590	2
scaffold_9	spliced_intron	10063361	10063447	+	asmbl_54260	none	STRG.11355.1,Trinity_GG_6304_c0_g1_i1,blat.proc3829877.chain_56	3	STRG.11355.2,STRG.11355.3,Trinity_GG_6304_c0_g1_i3,blat.proc3829877.chain_55	4
scaffold_7	retained_exon	1236329	1236502	+	asmbl_50473	none	Trinity_GG_4740_c0_g1_i10,Trinity_GG_4740_c1_g1_i2,blat.proc3829875.chain_1053	3	STRG.8627.8	1
scaffold_22	alt_acceptor	4416113	4416114	-	asmbl_30028	none	blat.proc3829899.chain_1993	1	STRG.24852.1,blat.proc3829899.chain_1904,blat.proc3829899.chain_1905	3
scaffold_2	alt_donor	6211330	6211331	-	asmbl_23210,asmbl_23211	none	STRG.1985.1,STRG.1985.2,blat.proc3829887.chain_1787	3	blat.proc3829887.chain_1785	1
scaffold_12	spliced_intron	5636130	5637493	-	asmbl_7645	none	STRG.14701.1,blat.proc3829893.chain_3066	2	blat.proc3829893.chain_3065	1
scaffold_8	ends_in_intron	8173140	8173140	+	asmbl_51993	none	blat.proc3829875.chain_2577	1	STRG.10093.3	1
scaffold_3	alt_acceptor	17364750	17364751	-	asmbl_39495,asmbl_39496,asmbl_39500,asmbl_39503,asmbl_39504,asmbl_39505	none	STRG.3972.1,STRG.3972.4,blat.proc3829889.chain_23,blat.proc3829889.chain_24,blat.proc3829889.chain_29,blat.proc3829889.chain_30	6	STRG.3972.3,blat.proc3829889.chain_25,blat.proc3829889.chain_31	3
scaffold_13	starts_in_intron	665283	665283	-	asmbl_9329	none	Trinity_GG_25669_c0_g1_i5,blat.proc3829895.chain_176	2	STRG.15439.1,STRG.15439.2,Trinity_GG_25669_c0_g1_i3,Trinity_GG_25669_c0_g1_i4,blat.proc3829895.chain_177,blat.proc3829895.chain_178	6
scaffold_4	alt_acceptor	13076257	13076258	+	asmbl_43110	none	blat.proc3829873.chain_1239	1	STRG.4945.4,STRG.4945.5,blat.proc3829873.chain_1240	3
scaffold_2	alt_acceptor	4241968	4241969	-	asmbl_23080,asmbl_23081	none	STRG.1859.1,STRG.1859.2,blat.proc3829887.chain_1733,blat.proc3829887.chain_1734	4	STRG.1859.3	1
scaffold_13	spliced_intron	14964496	14964531	+	asmbl_11462	none	STRG.16530.2	1	STRG.16530.1,Trinity_GG_9105_c3_g1_i1	2
scaffold_7	starts_in_intron	13865668	13865668	-	asmbl_50136	none	Trinity_GG_22309_c3_g1_i1,blat.proc3829891.chain_1681	2	STRG.9469.1,STRG.9469.2,blat.proc3829891.chain_1673,blat.proc3829891.chain_1674,blat.proc3829891.chain_1675,blat.proc3829891.chain_1676	6
scaffold_18	retained_intron	7629659	7631646	-	asmbl_19996,asmbl_19999	none	STRG.21453.1,STRG.21453.5,blat.proc3829897.chain_2308,blat.proc3829897.chain_2309	4	STRG.21453.4,Trinity_GG_29021_c0_g1_i10,blat.proc3829897.chain_2313	3
scaffold_16	retained_exon	318495	318641	+	asmbl_16813	none	STRG.19010.2,blat.proc3829879.chain_3632	2	STRG.19010.1,Trinity_GG_10426_c0_g1_i3,blat.proc3829879.chain_3634	3
scaffold_43	spliced_intron	829	875	-	asmbl_43671	none	STRG.30025.4	1	STRG.30025.2	1
scaffold_16	retained_intron	8581350	8581577	+	asmbl_17207	none	blat.proc3829881.chain_349	1	STRG.19476.1,STRG.19476.2,blat.proc3829881.chain_350,blat.proc3829881.chain_351	4
scaffold_20	retained_intron	11743342	11743680	-	asmbl_27120	none	blat.proc3829899.chain_599	1	STRG.23678.1,blat.proc3829899.chain_601	2
scaffold_15	alt_donor	15353701	15353702	+	asmbl_14709,asmbl_14712	none	STRG.18909.3,Trinity_GG_10368_c0_g1_i4,blat.proc3829879.chain_3501	3	Trinity_GG_10368_c0_g1_i7,Trinity_GG_10368_c0_g1_i9,blat.proc3829879.chain_3503,blat.proc3829879.chain_3505	4
scaffold_550	spliced_intron	1774	1827	+	asmbl_46515,asmbl_46516	none	blat.proc3829885.chain_3382,blat.proc3829885.chain_3383	2	STRG.30343.1,STRG.30343.2	2
scaffold_13	alternate_exon	15039367	15040290	-	asmbl_10187	none	STRG.16541.1,blat.proc3829895.chain_1255	2	blat.proc3829895.chain_1253	1
scaffold_2	retained_exon	10878680	10878697	+	asmbl_24771,asmbl_24778	none	STRG.2242.1,Trinity_GG_1275_c0_g1_i6,blat.proc3829871.chain_2376,blat.proc3829871.chain_2377	4	STRG.2242.2,blat.proc3829871.chain_2373	2
scaffold_10	ends_in_intron	6092228	6092228	-	asmbl_3351	none	Trinity_GG_23947_c0_g1_i1,blat.proc3829893.chain_881	2	STRG.12428.1	1
scaffold_6	alternate_exon	878101	878148	+	asmbl_46638	none	STRG.7151.2	1	STRG.7151.1	1
scaffold_5	retained_intron	12958540	12958648	-	asmbl_45881	none	STRG.6512.1	1	STRG.6512.2	1
scaffold_8	retained_intron	9651612	9651635	+	asmbl_52076,asmbl_52077,asmbl_52078	none	STRG.10210.1,STRG.10210.2,STRG.10210.3	3	blat.proc3829875.chain_2728,blat.proc3829875.chain_2729,blat.proc3829875.chain_2730	3
scaffold_14	spliced_intron	2122954	2123146	-	asmbl_12896,asmbl_12897,asmbl_12899	none	STRG.16822.1,Trinity_GG_26440_c0_g1_i4,Trinity_GG_26440_c0_g1_i5,Trinity_GG_26440_c0_g1_i7,blat.proc3829895.chain_1526,blat.proc3829895.chain_1528,blat.proc3829895.chain_1529	7	blat.proc3829895.chain_1530	1
scaffold_11	ends_in_intron	4744499	4744499	-	asmbl_6603	none	blat.proc3829893.chain_2038	1	STRG.13555.1,STRG.13555.2,blat.proc3829893.chain_2035,blat.proc3829893.chain_2037,blat.proc3829893.chain_2039,blat.proc3829893.chain_2040	6
scaffold_27	starts_in_intron	2881464	2881464	+	asmbl_36106	none	blat.proc3829885.chain_1822	1	STRG.28753.1,STRG.28753.2,STRG.28753.3,STRG.28753.4,blat.proc3829885.chain_1817,blat.proc3829885.chain_1818,blat.proc3829885.chain_1819,blat.proc3829885.chain_1820,blat.proc3829885.chain_1821,blat.proc3829885.chain_1823	10
scaffold_9	retained_exon	8395485	8395534	+	asmbl_54155	none	STRG.11249.4,blat.proc3829877.chain_18	2	STRG.11249.1,STRG.11249.5,blat.proc3829877.chain_17,blat.proc3829877.chain_20	4
scaffold_8	skipped_exon	8739454	8740005	+	asmbl_52015	none	Trinity_GG_5631_c0_g1_i2,blat.proc3829875.chain_2635	2	Trinity_GG_5631_c0_g1_i1,blat.proc3829875.chain_2634	2
scaffold_5	alternate_exon	13790152	13790976	-	asmbl_45934	none	STRG.6581.2,blat.proc3829889.chain_2564	2	STRG.6581.1	1
scaffold_6	alt_donor	10531211	10531212	+	asmbl_47222	none	STRG.7882.1	1	blat.proc3829875.chain_270	1
scaffold_9	retained_intron	17610765	17610884	-	asmbl_55622,asmbl_55624,asmbl_55629	none	STRG.11843.2,STRG.11843.3,STRG.11843.4,Trinity_GG_23540_c0_g2_i1,blat.proc3829893.chain_187	5	STRG.11843.1,blat.proc3829893.chain_182,blat.proc3829893.chain_183,blat.proc3829893.chain_185	4
scaffold_12	spliced_intron	12802383	12802469	+	asmbl_8988,asmbl_8989,asmbl_8990	none	STRG.15161.1,blat.proc3829877.chain_3578,blat.proc3829877.chain_3579,blat.proc3829877.chain_3580	4	STRG.15161.2,Trinity_GG_8330_c0_g2_i1,blat.proc3829877.chain_3581	3
scaffold_12	skipped_exon	14041166	14041584	+	asmbl_9011	none	Trinity_GG_8373_c0_g1_i1,blat.proc3829877.chain_3649	2	STRG.15215.1,Trinity_GG_8373_c0_g1_i2,blat.proc3829877.chain_3650	3
scaffold_3	retained_intron	6183517	6183612	-	asmbl_38864,asmbl_38865,asmbl_38867	none	STRG.3262.4,blat.proc3829887.chain_3018	2	STRG.3262.3	1
scaffold_7	ends_in_intron	732231	732231	-	asmbl_49514	none	STRG.8601.2	1	STRG.8601.1,Trinity_GG_21937_c0_g1_i1,blat.proc3829891.chain_974,blat.proc3829891.chain_975	4
scaffold_13	alt_acceptor	11581754	11581755	+	asmbl_11264,asmbl_11265,asmbl_11268	none	STRG.16293.2,STRG.16293.3,blat.proc3829879.chain_1061,blat.proc3829879.chain_1064,blat.proc3829879.chain_1065	5	STRG.16293.1	1
scaffold_12	alt_acceptor	9234535	9234536	-	asmbl_7789,asmbl_7796,asmbl_7799	none	STRG.14912.3,STRG.14912.4,blat.proc3829893.chain_3300	3	STRG.14912.2,STRG.14912.5,STRG.14912.6,STRG.14912.7,STRG.14912.8,blat.proc3829893.chain_3298,blat.proc3829893.chain_3301,blat.proc3829893.chain_3304,blat.proc3829893.chain_3305,blat.proc3829893.chain_3307	10
scaffold_15	alt_donor	15413654	15413655	+	asmbl_14732	none	blat.proc3829879.chain_3550	1	STRG.18922.1,blat.proc3829879.chain_3555	2
scaffold_1	alt_acceptor	14259745	14259746	-	asmbl_885	none	blat.proc3829887.chain_913	1	STRG.1016.1,blat.proc3829887.chain_912	2
scaffold_24	retained_intron	8736585	8736696	-	asmbl_33087,asmbl_33090	none	STRG.26873.2,blat.proc3829901.chain_170	2	STRG.26873.1,blat.proc3829901.chain_171,blat.proc3829901.chain_172,blat.proc3829901.chain_173	4
scaffold_7	alt_donor	13213351	13213352	+	asmbl_51205	none	blat.proc3829875.chain_1879	1	STRG.9420.3,STRG.9420.4	2
scaffold_22	spliced_intron	322655	323437	+	asmbl_29132,asmbl_29136	none	STRG.24670.1,blat.proc3829883.chain_1728,blat.proc3829883.chain_1731	3	STRG.24670.2	1
scaffold_23	alt_donor	2164822	2164823	-	asmbl_31418,asmbl_31420	none	STRG.25669.5,STRG.25669.7	2	STRG.25669.1	1
scaffold_2	starts_in_intron	4445356	4445356	-	asmbl_23104	none	STRG.1871.2	1	STRG.1871.1,Trinity_GG_18064_c0_g1_i1,blat.proc3829887.chain_1739,blat.proc3829887.chain_1740	4
scaffold_4	retained_intron	4691873	4692128	+	asmbl_42632	none	blat.proc3829873.chain_718	1	STRG.4376.1,blat.proc3829873.chain_714,blat.proc3829873.chain_716,blat.proc3829873.chain_717	4
scaffold_27	skipped_exon	7521642	7522241	+	asmbl_36421	none	STRG.29096.2,blat.proc3829885.chain_2227	2	STRG.29096.4	1
scaffold_19	alt_acceptor	1612500	1612501	+	asmbl_22050	none	STRG.21903.2,blat.proc3829881.chain_2878	2	STRG.21903.1,Trinity_GG_12121_c0_g1_i2,blat.proc3829881.chain_2876,blat.proc3829881.chain_2877	4
scaffold_15	ends_in_intron	2423733	2423733	-	asmbl_15008	none	blat.proc3829895.chain_2712	1	STRG.18006.2,blat.proc3829895.chain_2709	2
scaffold_23	retained_intron	10230166	10230202	+	asmbl_31138	none	STRG.26212.2	1	STRG.26212.1	1
scaffold_2	spliced_intron	15805763	15805856	-	asmbl_23674	none	STRG.2525.1	1	Trinity_GG_18409_c0_g1_i2,blat.proc3829887.chain_2375	2
scaffold_5	retained_intron	6734217	6734431	+	asmbl_44111,asmbl_44112	none	STRG.6071.1,STRG.6071.3,blat.proc3829873.chain_2241	3	STRG.6071.2,blat.proc3829873.chain_2242	2
scaffold_20	retained_intron	5954529	5955148	-	asmbl_26724	none	Trinity_GG_29917_c0_g1_i1,blat.proc3829899.chain_158	2	STRG.23191.2,blat.proc3829899.chain_157	2
scaffold_2	alternate_exon	6203175	6208982	-	asmbl_23211,asmbl_23213	none	STRG.1985.1,blat.proc3829887.chain_1785,blat.proc3829887.chain_1787	3	STRG.1985.2,Trinity_GG_18090_c3_g1_i1,blat.proc3829887.chain_1790	3
scaffold_18	retained_exon	5780359	5780463	+	asmbl_20635,asmbl_20637	none	STRG.21318.1,STRG.21318.2,blat.proc3829881.chain_2250,blat.proc3829881.chain_2253	4	blat.proc3829881.chain_2255	1
scaffold_6	alternate_exon	8933800	8934068	+	asmbl_47117,asmbl_47119	none	STRG.7765.2,STRG.7765.3,blat.proc3829875.chain_41	3	STRG.7765.1,blat.proc3829875.chain_42	2
scaffold_2	ends_in_intron	13443872	13443872	+	asmbl_24886	none	Trinity_GG_1290_c0_g1_i3,blat.proc3829871.chain_2400	2	STRG.2359.2,Trinity_GG_1290_c0_g1_i1,blat.proc3829871.chain_2401	3
scaffold_2	spliced_intron	7241660	7241753	+	asmbl_24584,asmbl_24585,asmbl_24587,asmbl_24588,asmbl_24589,asmbl_24590,asmbl_24591	none	STRG.2061.1,blat.proc3829871.chain_2164,blat.proc3829871.chain_2166,blat.proc3829871.chain_2168,blat.proc3829871.chain_2169,blat.proc3829871.chain_2170,blat.proc3829871.chain_2171,blat.proc3829871.chain_2172	8	blat.proc3829871.chain_2165	1
scaffold_18	starts_in_intron	1741220	1741220	+	asmbl_20406	none	blat.proc3829881.chain_1941	1	STRG.21048.1,blat.proc3829881.chain_1940	2
scaffold_19	spliced_intron	3207630	3207699	+	asmbl_22110	none	STRG.22001.2,blat.proc3829881.chain_2953	2	STRG.22001.3,blat.proc3829881.chain_2955	2
scaffold_4	alternate_exon	16315601	16315867	+	asmbl_43297,asmbl_43298,asmbl_43299	none	STRG.5205.3,STRG.5205.4,Trinity_GG_2902_c0_g1_i6,blat.proc3829873.chain_1510,blat.proc3829873.chain_1511,blat.proc3829873.chain_1514	6	STRG.5205.1	1
scaffold_21	retained_intron	2324183	2324268	-	asmbl_27471	none	STRG.23836.1,blat.proc3829899.chain_935,blat.proc3829899.chain_936	3	STRG.23836.2	1
scaffold_2	retained_intron	9295733	9295827	+	asmbl_24714	none	STRG.2171.2	1	STRG.2171.1,blat.proc3829871.chain_2283	2
scaffold_6	starts_in_intron	9987421	9987421	-	asmbl_48579,asmbl_48580	none	blat.proc3829891.chain_87,blat.proc3829891.chain_88	2	STRG.7831.1,STRG.7831.3,blat.proc3829891.chain_86	3
scaffold_1	retained_exon	6752807	6752940	+	asmbl_1843	none	STRG.461.1,blat.proc3829871.chain_516	2	STRG.461.3,blat.proc3829871.chain_515	2
scaffold_17	alt_donor	3233697	3233698	-	asmbl_18851	none	STRG.20093.2,blat.proc3829897.chain_1052	2	STRG.20093.1,blat.proc3829897.chain_1051	2
scaffold_15	retained_intron	400486	400509	+	asmbl_13915	none	STRG.17881.1,Trinity_GG_9837_c1_g1_i1,blat.proc3829879.chain_2577	3	STRG.17881.2	1
scaffold_15	alternate_exon	13682662	13682773	-	asmbl_15672	none	STRG.18788.2	1	STRG.18788.1,blat.proc3829895.chain_3526	2
scaffold_27	starts_in_intron	7011782	7011782	-	asmbl_37043	none	STRG.29048.1,Trinity_GG_33288_c0_g1_i2,blat.proc3829901.chain_2204	3	STRG.29048.2	1
scaffold_12	spliced_intron	6542586	6543063	+	asmbl_8660,asmbl_8661	none	STRG.14744.1,STRG.14744.2,Trinity_GG_8141_c0_g1_i2,blat.proc3829877.chain_3229	4	Trinity_GG_8141_c0_g1_i1,blat.proc3829877.chain_3228	2
scaffold_4	alt_acceptor	16317887	16317888	+	asmbl_43299,asmbl_43300,asmbl_43301	none	STRG.5205.1,STRG.5205.2,STRG.5205.3,blat.proc3829873.chain_1510,blat.proc3829873.chain_1512	5	STRG.5205.4,Trinity_GG_2902_c0_g1_i2,blat.proc3829873.chain_1509	3
scaffold_26	ends_in_intron	5509611	5509611	+	asmbl_35538	none	blat.proc3829885.chain_1247	1	STRG.28240.1,blat.proc3829885.chain_1249	2
scaffold_14	retained_intron	9475827	9475918	+	asmbl_12265	none	STRG.17325.1,Trinity_GG_9548_c0_g1_i2,blat.proc3829879.chain_2070	3	STRG.17325.2,STRG.17325.3,Trinity_GG_9548_c0_g1_i1,blat.proc3829879.chain_2069	4
scaffold_5	spliced_intron	16091466	16091548	+	asmbl_44703	none	STRG.6788.1,blat.proc3829873.chain_2867	2	blat.proc3829873.chain_2869	1
scaffold_23	skipped_exon	8101894	8102804	+	asmbl_31056	none	STRG.26106.1	1	STRG.26106.2	1
scaffold_7	alt_acceptor	1235751	1235752	+	asmbl_50476,asmbl_50477,asmbl_50478	none	STRG.8627.3,STRG.8627.7,STRG.8627.9	3	STRG.8627.8	1
scaffold_13	alt_acceptor	7217778	7217779	+	asmbl_11011	none	blat.proc3829879.chain_699	1	STRG.16002.1,blat.proc3829879.chain_695,blat.proc3829879.chain_696,blat.proc3829879.chain_698,blat.proc3829879.chain_701	5
scaffold_17	spliced_intron	5710589	5710711	-	asmbl_18992	none	STRG.20262.1	1	STRG.20262.2,blat.proc3829897.chain_1234,blat.proc3829897.chain_1235,blat.proc3829897.chain_1236,blat.proc3829897.chain_1237	5
scaffold_7	starts_in_intron	10340203	10340203	-	asmbl_49930	none	blat.proc3829891.chain_1449	1	STRG.9204.1,STRG.9204.2,STRG.9204.3,Trinity_GG_22206_c0_g1_i1,blat.proc3829891.chain_1450	5
scaffold_8	ends_in_intron	4668907	4668907	-	asmbl_52779	none	Trinity_GG_22547_c0_g2_i1,blat.proc3829891.chain_2080	2	blat.proc3829891.chain_2078	1
scaffold_23	alt_donor	4312110	4312111	+	asmbl_30804	none	blat.proc3829883.chain_2714	1	STRG.25826.1,Trinity_GG_14254_c0_g1_i1,Trinity_GG_14254_c0_g1_i7,blat.proc3829883.chain_2712,blat.proc3829883.chain_2715,blat.proc3829883.chain_2716	6
scaffold_14	alt_acceptor	3588754	3588755	+	asmbl_11927	none	STRG.16927.3	1	STRG.16927.2,blat.proc3829879.chain_1658	2
scaffold_11	retained_exon	9817110	9817177	+	asmbl_5862	none	STRG.13985.1,blat.proc3829877.chain_2474	2	STRG.13985.2	1
scaffold_15	alt_donor	6064822	6064823	+	asmbl_14176	none	STRG.18258.2	1	STRG.18258.1,blat.proc3829879.chain_2893,blat.proc3829879.chain_2894	3
scaffold_7	retained_intron	18619948	18620034	-	asmbl_50303	none	Trinity_GG_22452_c0_g1_i4,blat.proc3829891.chain_1917	2	STRG.9671.1,STRG.9671.2,blat.proc3829891.chain_1915,blat.proc3829891.chain_1916,blat.proc3829891.chain_1918	5
scaffold_16	alternate_exon	7230742	7240373	-	asmbl_16350	none	STRG.19382.8,blat.proc3829897.chain_417	2	STRG.19382.9	1
scaffold_11	spliced_intron	170652	171007	+	asmbl_5216,asmbl_5218,asmbl_5220	none	STRG.13231.1,STRG.13231.2,STRG.13231.4	3	STRG.13231.3	1
scaffold_21	skipped_exon	11312862	11315663	+	asmbl_28931	none	STRG.24592.2	1	STRG.24592.1,blat.proc3829883.chain_1619	2
scaffold_22	alternate_exon	10321464	10321575	+	asmbl_29645	none	STRG.25367.3	1	STRG.25367.1,STRG.25367.2	2
scaffold_10	alternate_exon	9543894	9546458	+	asmbl_4680	none	STRG.12692.1	1	Trinity_GG_7015_c0_g1_i7,blat.proc3829877.chain_1284	2
scaffold_6	alt_acceptor	6942801	6942802	+	asmbl_46964	none	STRG.7596.2	1	STRG.7596.1,blat.proc3829873.chain_3706,blat.proc3829873.chain_3708	3
scaffold_2	alt_acceptor	7936884	7936885	+	asmbl_24634,asmbl_24635	none	STRG.2090.1,Trinity_GG_1149_c0_g1_i4,Trinity_GG_1149_c0_g1_i5,blat.proc3829871.chain_2100,blat.proc3829871.chain_2104	5	Trinity_GG_1149_c0_g1_i1,blat.proc3829871.chain_2101	2
scaffold_10	spliced_intron	13279609	13280597	+	asmbl_4860	none	Trinity_GG_7120_c0_g1_i1,blat.proc3829877.chain_1486	2	Trinity_GG_7120_c0_g1_i2,blat.proc3829877.chain_1487	2
scaffold_2	retained_intron	5375992	5376203	-	asmbl_23171	none	STRG.1946.3,blat.proc3829887.chain_1846	2	blat.proc3829887.chain_1847	1
scaffold_6	ends_in_intron	2698010	2698010	-	asmbl_48101	none	blat.proc3829889.chain_3259	1	STRG.7262.1,blat.proc3829889.chain_3258	2
scaffold_10	starts_in_intron	641453	641453	-	asmbl_2896	none	blat.proc3829893.chain_415	1	STRG.11934.1,blat.proc3829893.chain_414	2
scaffold_5	spliced_intron	9086493	9086576	+	asmbl_44259,asmbl_44262,asmbl_44263,asmbl_44264,asmbl_44265,asmbl_44266,asmbl_44268,asmbl_44269,asmbl_44271	none	STRG.6237.1,STRG.6237.4,STRG.6237.5,blat.proc3829873.chain_2418,blat.proc3829873.chain_2419,blat.proc3829873.chain_2421,blat.proc3829873.chain_2422,blat.proc3829873.chain_2423,blat.proc3829873.chain_2424,blat.proc3829873.chain_2426	10	Trinity_GG_3425_c0_g1_i2,blat.proc3829873.chain_2420	2
scaffold_9	starts_in_intron	13856157	13856157	-	asmbl_55409	none	blat.proc3829893.chain_33	1	STRG.11644.3,blat.proc3829893.chain_32,blat.proc3829893.chain_35	3
scaffold_17	spliced_intron	3998584	3998790	+	asmbl_17884	none	blat.proc3829881.chain_990	1	STRG.20145.1,STRG.20145.3,STRG.20145.4,blat.proc3829881.chain_988,blat.proc3829881.chain_991,blat.proc3829881.chain_992	6
scaffold_26	spliced_intron	9314784	9314931	+	asmbl_35737,asmbl_35739,asmbl_35740,asmbl_35741,asmbl_35746	none	STRG.28479.1,STRG.28479.2,STRG.28479.3,blat.proc3829885.chain_1513,blat.proc3829885.chain_1516,blat.proc3829885.chain_1519	6	blat.proc3829885.chain_1514	1
scaffold_15	skipped_exon	2422714	2424597	-	asmbl_15007	none	STRG.18006.3,blat.proc3829895.chain_2711	2	STRG.18006.2,blat.proc3829895.chain_2709	2
scaffold_7	retained_intron	13863191	13863810	-	asmbl_50136,asmbl_50141,asmbl_50142	none	STRG.9469.3,blat.proc3829891.chain_1676,blat.proc3829891.chain_1677	3	STRG.9469.1,STRG.9469.2,blat.proc3829891.chain_1673,blat.proc3829891.chain_1674,blat.proc3829891.chain_1675	5
scaffold_10	starts_in_intron	11603350	11603350	+	asmbl_4757	none	Trinity_GG_7062_c0_g2_i1,blat.proc3829877.chain_1386	2	STRG.12807.1,STRG.12807.2,STRG.12807.5,blat.proc3829877.chain_1378,blat.proc3829877.chain_1380,blat.proc3829877.chain_1381,blat.proc3829877.chain_1383,blat.proc3829877.chain_1384,blat.proc3829877.chain_1385	9
scaffold_6	retained_intron	4962197	4962323	-	asmbl_48318	none	blat.proc3829889.chain_3477	1	blat.proc3829889.chain_3481	1
scaffold_14	spliced_intron	6412534	6412614	+	asmbl_12055	none	STRG.17074.1,blat.proc3829879.chain_1748	2	blat.proc3829879.chain_1749	1
scaffold_19	alt_acceptor	12687694	12687695	-	asmbl_21738,asmbl_21739,asmbl_21740	none	STRG.22579.1,STRG.22579.2,blat.proc3829897.chain_3329,blat.proc3829897.chain_3330,blat.proc3829897.chain_3332	5	blat.proc3829897.chain_3331	1
scaffold_6	retained_intron	5002265	5002285	+	asmbl_46849	none	Trinity_GG_4030_c0_g1_i1	1	STRG.7467.1	1
scaffold_9	starts_in_intron	2812289	2812289	-	asmbl_54848	none	STRG.10915.2,blat.proc3829891.chain_3015	2	STRG.10915.1	1
scaffold_20	spliced_intron	1469911	1470058	-	asmbl_26503,asmbl_26504,asmbl_26509	none	STRG.22854.2,STRG.22854.3,blat.proc3829897.chain_3659,blat.proc3829897.chain_3660,blat.proc3829897.chain_3661	5	blat.proc3829897.chain_3656,blat.proc3829897.chain_3658	2
scaffold_18	retained_intron	7199469	7200059	+	asmbl_20749	none	STRG.21415.3,Trinity_GG_11823_c0_g1_i2,blat.proc3829881.chain_2374	3	STRG.21415.1,Trinity_GG_11823_c0_g1_i1,blat.proc3829881.chain_2375	3
scaffold_15	spliced_intron	12000429	12000658	-	asmbl_15564,asmbl_15565	none	STRG.18630.2,STRG.18630.3,Trinity_GG_27487_c0_g1_i1,Trinity_GG_27487_c0_g1_i7,blat.proc3829895.chain_3418,blat.proc3829895.chain_3420	6	Trinity_GG_27487_c0_g1_i4,blat.proc3829895.chain_3419,blat.proc3829895.chain_3421	3
scaffold_3	retained_intron	3258676	3259547	+	asmbl_39904	none	blat.proc3829871.chain_3297	1	STRG.3087.1,STRG.3087.6	2
scaffold_24	spliced_intron	7864239	7864324	-	asmbl_33064	none	blat.proc3829901.chain_130	1	STRG.26822.1,blat.proc3829901.chain_131	2
scaffold_13	spliced_intron	394206	395582	-	asmbl_9310,asmbl_9311,asmbl_9318	none	STRG.15428.3,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_221,blat.proc3829895.chain_224	5	Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i25,Trinity_GG_25691_c0_g1_i7,blat.proc3829895.chain_223,blat.proc3829895.chain_229,blat.proc3829895.chain_232	6
scaffold_11	retained_intron	3095645	3095846	+	asmbl_5363	none	STRG.13423.1	1	STRG.13423.2	1
scaffold_5	alt_acceptor	9082271	9082272	+	asmbl_44268	none	STRG.6237.5	1	STRG.6237.1,STRG.6237.2,STRG.6237.3,STRG.6237.4,blat.proc3829873.chain_2418,blat.proc3829873.chain_2419,blat.proc3829873.chain_2421,blat.proc3829873.chain_2422,blat.proc3829873.chain_2423,blat.proc3829873.chain_2426	10
scaffold_13	ends_in_intron	8356920	8356920	+	asmbl_11118	none	Trinity_GG_8876_c1_g1_i1	1	STRG.16112.4	1
scaffold_23	ends_in_intron	3233848	3233848	-	asmbl_31510	none	Trinity_GG_31384_c1_g1_i1,blat.proc3829899.chain_2813	2	STRG.25734.1,blat.proc3829899.chain_2811	2
scaffold_5	starts_in_intron	6578953	6578953	-	asmbl_45487	none	blat.proc3829889.chain_2150	1	STRG.6049.2,blat.proc3829889.chain_2147	2
scaffold_8	retained_intron	3615643	3615886	+	asmbl_51773	none	STRG.9854.1,blat.proc3829875.chain_2278	2	STRG.9854.2,blat.proc3829875.chain_2279	2
scaffold_22	alt_donor	6502593	6502594	-	asmbl_30100	none	STRG.24970.1,blat.proc3829899.chain_2076	2	STRG.24970.2	1
scaffold_2	retained_intron	14623203	14623311	+	asmbl_24991	none	blat.proc3829871.chain_2632	1	STRG.2455.1,blat.proc3829871.chain_2633	2
scaffold_20	starts_in_intron	9962809	9962809	-	asmbl_26991	none	blat.proc3829899.chain_555	1	STRG.23526.1,STRG.23526.2,Trinity_GG_30138_c1_g1_i3,blat.proc3829899.chain_553	4
scaffold_18	retained_intron	2082391	2082658	+	asmbl_20428,asmbl_20431	none	STRG.21100.3,blat.proc3829881.chain_1964,blat.proc3829881.chain_1967	3	STRG.21100.1,STRG.21100.2,Trinity_GG_11607_c0_g1_i3,blat.proc3829881.chain_1965,blat.proc3829881.chain_1966	5
scaffold_14	alt_donor	15517181	15517182	-	asmbl_13709	none	STRG.17775.3	1	STRG.17775.2	1
scaffold_4	alt_acceptor	17122455	17122456	-	asmbl_42004,asmbl_42005	none	STRG.5310.3,STRG.5310.5	2	STRG.5310.1,STRG.5310.2	2
scaffold_14	alt_acceptor	871673	871674	+	asmbl_11748,asmbl_11749	none	STRG.16747.1,blat.proc3829879.chain_1427	2	STRG.16747.2,STRG.16747.3	2
scaffold_6	ends_in_intron	16468324	16468324	+	asmbl_47637	none	STRG.8367.1,blat.proc3829875.chain_744	2	STRG.8367.2,blat.proc3829875.chain_743	2
scaffold_26	retained_intron	4678864	4679059	-	asmbl_34857	none	STRG.28174.1	1	STRG.28174.2	1
scaffold_14	retained_exon	7495630	7496652	+	asmbl_12144	none	STRG.17177.2,Trinity_GG_9413_c1_g1_i2,blat.proc3829879.chain_1834,blat.proc3829879.chain_1836	4	STRG.17177.3	1
scaffold_10	starts_in_intron	16476114	16476114	-	asmbl_3908	none	blat.proc3829893.chain_1614	1	STRG.13105.1,STRG.13105.2,STRG.13105.3,STRG.13105.4,blat.proc3829893.chain_1612	5
scaffold_2	spliced_intron	14132199	14132279	-	asmbl_23573,asmbl_23574	none	STRG.2406.1,blat.proc3829887.chain_2196,blat.proc3829887.chain_2197	3	blat.proc3829887.chain_2198	1
scaffold_15	alt_acceptor	2491469	2491470	+	asmbl_13999	none	STRG.18021.1	1	STRG.18021.2	1
scaffold_1	alternate_exon	3525304	3525752	-	asmbl_162	none	STRG.213.4,blat.proc3829887.chain_93,blat.proc3829887.chain_94	3	STRG.213.2	1
scaffold_3	alt_donor	6659747	6659748	+	asmbl_40062,asmbl_40063,asmbl_40064,asmbl_40065,asmbl_40067,asmbl_40070,asmbl_40071	none	STRG.3290.1,STRG.3290.2,Trinity_GG_1861_c0_g1_i10,blat.proc3829871.chain_3460,blat.proc3829871.chain_3461,blat.proc3829871.chain_3464,blat.proc3829871.chain_3469,blat.proc3829871.chain_3471	8	STRG.3290.4,STRG.3290.5,blat.proc3829871.chain_3459,blat.proc3829871.chain_3468	4
scaffold_14	alternate_exon	8400813	8401055	-	asmbl_13285	none	STRG.17262.3,blat.proc3829895.chain_1982	2	STRG.17262.2,blat.proc3829895.chain_1979,blat.proc3829895.chain_1981	3
scaffold_16	ends_in_intron	13018484	13018484	-	asmbl_16580	none	Trinity_GG_28046_c0_g1_i1,blat.proc3829897.chain_652	2	STRG.19751.2	1
scaffold_14	alt_acceptor	11665977	11665978	-	asmbl_13498,asmbl_13499,asmbl_13500	none	STRG.17495.2,blat.proc3829895.chain_2184,blat.proc3829895.chain_2186,blat.proc3829895.chain_2187	4	STRG.17495.1,blat.proc3829895.chain_2185	2
scaffold_1	ends_in_intron	12756869	12756869	-	asmbl_767	none	STRG.894.2	1	STRG.894.1,blat.proc3829887.chain_750	2
scaffold_13	starts_in_intron	1229683	1229683	+	asmbl_10522	none	Trinity_GG_8526_c1_g1_i3,blat.proc3829879.chain_210	2	STRG.15478.2	1
scaffold_28	alternate_exon	5014755	5015660	+	asmbl_38251	none	STRG.29628.3,Trinity_GG_16433_c0_g2_i4,blat.proc3829885.chain_2755	3	Trinity_GG_16433_c0_g1_i1,blat.proc3829885.chain_2751,blat.proc3829885.chain_2752,blat.proc3829885.chain_2753	4
scaffold_13	starts_in_intron	2337301	2337301	+	asmbl_10575,asmbl_10580,asmbl_10581,asmbl_10583,asmbl_10584,asmbl_10585,asmbl_10586	none	STRG.15543.11,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_157,blat.proc3829879.chain_160,blat.proc3829879.chain_161	7	STRG.15543.10,STRG.15543.3,STRG.15543.4,STRG.15543.6,STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_156,blat.proc3829879.chain_159,blat.proc3829879.chain_162,blat.proc3829879.chain_163,blat.proc3829879.chain_164	11
scaffold_7	retained_intron	15595021	15595253	+	asmbl_51329	none	STRG.9548.1,blat.proc3829875.chain_2000	2	STRG.9548.3	1
scaffold_16	starts_in_intron	1158727	1158727	+	asmbl_16859	none	Trinity_GG_10465_c0_g1_i2	1	STRG.19070.1	1
scaffold_1	alt_donor	14282843	14282844	-	asmbl_891	none	STRG.1023.2,Trinity_GG_17542_c0_g1_i1,blat.proc3829887.chain_893	3	STRG.1023.1,Trinity_GG_17542_c0_g1_i2,blat.proc3829887.chain_892	3
scaffold_8	alt_acceptor	4873090	4873091	+	asmbl_51854,asmbl_51855	none	STRG.9943.5,Trinity_GG_5525_c0_g1_i4,blat.proc3829875.chain_2424,blat.proc3829875.chain_2425	4	STRG.9943.1,STRG.9943.2,blat.proc3829875.chain_2422,blat.proc3829875.chain_2423	4
scaffold_6	retained_intron	8581465	8581566	+	asmbl_47086,asmbl_47090	none	STRG.7732.2,blat.proc3829875.chain_110	2	STRG.7732.4	1
scaffold_13	alternate_exon	16048995	16049039	+	asmbl_11525	none	STRG.16628.2	1	blat.proc3829879.chain_1379	1
scaffold_8	ends_in_intron	7448471	7448471	-	asmbl_52899	none	blat.proc3829891.chain_2175	1	STRG.10064.1,blat.proc3829891.chain_2176,blat.proc3829891.chain_2177	3
scaffold_19	retained_intron	5461618	5461705	+	asmbl_22176	none	Trinity_GG_12224_c0_g3_i2,blat.proc3829881.chain_3061	2	blat.proc3829881.chain_3055	1
scaffold_12	starts_in_intron	9233307	9233307	-	asmbl_7790	none	blat.proc3829893.chain_3308	1	STRG.14912.8,blat.proc3829893.chain_3298,blat.proc3829893.chain_3301,blat.proc3829893.chain_3305	4
scaffold_8	alt_acceptor	15692368	15692369	+	asmbl_52406	none	STRG.10563.2	1	STRG.10563.1,Trinity_GG_5874_c0_g1_i2,blat.proc3829875.chain_3063	3
scaffold_4	alt_acceptor	13607677	13607678	+	asmbl_43142	none	STRG.4987.2	1	STRG.4987.1,Trinity_GG_2769_c0_g1_i1,blat.proc3829873.chain_1303	3
scaffold_2	spliced_intron	7469156	7469515	-	asmbl_23284	none	Trinity_GG_18127_c0_g1_i23,blat.proc3829887.chain_1889	2	STRG.2075.2,blat.proc3829887.chain_1892,blat.proc3829887.chain_1898	3
scaffold_13	retained_intron	16190374	16190412	-	asmbl_10250	none	Trinity_GG_26290_c1_g1_i1,blat.proc3829895.chain_1286	2	STRG.16653.2	1
scaffold_22	alt_acceptor	6874718	6874719	+	asmbl_29424	none	STRG.24988.1,blat.proc3829883.chain_2050	2	STRG.24988.2,blat.proc3829883.chain_2051	2
scaffold_13	spliced_intron	7501582	7501940	-	asmbl_9843,asmbl_9846,asmbl_9847,asmbl_9849,asmbl_9850,asmbl_9851	none	STRG.16034.1,STRG.16034.2,STRG.16034.3,STRG.16034.4,STRG.16034.5,Trinity_GG_26030_c0_g1_i2,Trinity_GG_26030_c0_g1_i3,Trinity_GG_26030_c0_g1_i4,blat.proc3829895.chain_812,blat.proc3829895.chain_814,blat.proc3829895.chain_817,blat.proc3829895.chain_819,blat.proc3829895.chain_822,blat.proc3829895.chain_823	14	Trinity_GG_26030_c0_g1_i10,Trinity_GG_26030_c0_g1_i9,blat.proc3829895.chain_813,blat.proc3829895.chain_815,blat.proc3829895.chain_816,blat.proc3829895.chain_818,blat.proc3829895.chain_820,blat.proc3829895.chain_821	8
scaffold_5	ends_in_intron	14126276	14126276	-	asmbl_45970	none	blat.proc3829889.chain_2658	1	STRG.6617.1	1
scaffold_10	starts_in_intron	17157572	17157572	-	asmbl_3938	none	STRG.13151.2	1	blat.proc3829893.chain_1646	1
scaffold_27	spliced_intron	7277981	7278212	+	asmbl_36402	none	STRG.29070.2	1	STRG.29070.1,Trinity_GG_16046_c0_g1_i1,blat.proc3829885.chain_2123	3
scaffold_28	skipped_exon	5361539	5362274	-	asmbl_37612	none	STRG.29662.2	1	STRG.29662.1,Trinity_GG_33640_c0_g1_i1,blat.proc3829901.chain_2786	3
scaffold_15	ends_in_intron	3006551	3006551	+	asmbl_14028	none	STRG.18073.2,blat.proc3829879.chain_2712	2	STRG.18073.1,blat.proc3829879.chain_2709	2
scaffold_7	spliced_intron	16823575	16823876	-	asmbl_50234,asmbl_50236	none	STRG.9585.2,blat.proc3829891.chain_1826	2	STRG.9585.1,blat.proc3829891.chain_1828,blat.proc3829891.chain_1829	3
scaffold_2	retained_intron	8059384	8059478	-	asmbl_23329	none	STRG.2094.1,Trinity_GG_18182_c0_g1_i1,blat.proc3829887.chain_1998	3	STRG.2094.2,blat.proc3829887.chain_1997	2
scaffold_10	alternate_exon	3758322	3759631	-	asmbl_3136	none	STRG.12200.2	1	STRG.12200.3	1
scaffold_20	retained_exon	3036843	3036908	+	asmbl_25668	none	STRG.23025.1,blat.proc3829883.chain_128	2	STRG.23025.2,Trinity_GG_12684_c0_g1_i2,blat.proc3829883.chain_129	3
scaffold_8	alternate_exon	16507020	16517926	-	asmbl_53428	none	STRG.10621.5	1	Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2867,blat.proc3829891.chain_2868	5
scaffold_28	spliced_intron	6515478	6515563	-	asmbl_37675	none	blat.proc3829901.chain_2784	1	STRG.29726.1,STRG.29726.3	2
scaffold_13	starts_in_intron	1238377	1238377	+	asmbl_10516	none	Trinity_GG_8526_c0_g2_i8,blat.proc3829879.chain_206	2	STRG.15478.1,STRG.15478.2,STRG.15478.4,STRG.15478.5,STRG.15478.6,STRG.15478.7,Trinity_GG_8526_c0_g2_i3,blat.proc3829879.chain_204,blat.proc3829879.chain_205,blat.proc3829879.chain_207,blat.proc3829879.chain_208	11
scaffold_10	retained_exon	4049896	4050689	+	asmbl_4381	none	STRG.12236.1,Trinity_GG_6793_c1_g1_i2,blat.proc3829877.chain_912	3	STRG.12236.2	1
scaffold_6	starts_in_intron	12619384	12619384	-	asmbl_48767	none	blat.proc3829891.chain_311	1	STRG.8011.1,Trinity_GG_21569_c0_g1_i2,Trinity_GG_21569_c0_g1_i3,blat.proc3829891.chain_310,blat.proc3829891.chain_312	5
scaffold_8	alt_acceptor	9643594	9643595	+	asmbl_52077	none	STRG.10210.3	1	STRG.10210.1,STRG.10210.2,blat.proc3829875.chain_2728,blat.proc3829875.chain_2729,blat.proc3829875.chain_2730	5
scaffold_6	alternate_exon	9134983	9135029	+	asmbl_47151	none	STRG.7784.5	1	STRG.7784.1,STRG.7784.2,STRG.7784.3,blat.proc3829875.chain_195,blat.proc3829875.chain_198,blat.proc3829875.chain_201,blat.proc3829875.chain_202	7
scaffold_11	spliced_intron	6252706	6253377	+	asmbl_5584,asmbl_5586,asmbl_5589,asmbl_5590	none	STRG.13670.2,Trinity_GG_7547_c0_g1_i2,Trinity_GG_7547_c0_g1_i9,blat.proc3829877.chain_2179,blat.proc3829877.chain_2181,blat.proc3829877.chain_2183	6	STRG.13670.3,Trinity_GG_7547_c1_g1_i1	2
scaffold_5	ends_in_intron	6188482	6188482	+	asmbl_44067	none	blat.proc3829873.chain_2201	1	STRG.6024.1,blat.proc3829873.chain_2200	2
scaffold_3	starts_in_intron	19822794	19822794	-	asmbl_39604	none	STRG.4095.1,Trinity_GG_19272_c2_g1_i1,blat.proc3829889.chain_163	3	STRG.4095.2,STRG.4095.3,blat.proc3829889.chain_161	3
scaffold_18	starts_in_intron	4134395	4134395	+	asmbl_20530	none	Trinity_GG_11629_c1_g1_i1,blat.proc3829881.chain_2011	2	STRG.21207.1	1
scaffold_1	starts_in_intron	18488232	18488232	-	asmbl_1107	none	STRG.1300.5,blat.proc3829887.chain_1209	2	STRG.1300.2,STRG.1300.3,STRG.1300.4,blat.proc3829887.chain_1208,blat.proc3829887.chain_1210,blat.proc3829887.chain_1211,blat.proc3829887.chain_1212	7
scaffold_9	alt_acceptor	10062780	10062781	+	asmbl_54262	none	STRG.11355.3	1	STRG.11355.1,STRG.11355.2,Trinity_GG_6304_c0_g1_i1,Trinity_GG_6304_c0_g1_i3,blat.proc3829877.chain_55,blat.proc3829877.chain_56	6
scaffold_4	starts_in_intron	3383633	3383633	+	asmbl_42521	none	blat.proc3829873.chain_588	1	STRG.4269.1,STRG.4269.2,blat.proc3829873.chain_584,blat.proc3829873.chain_586,blat.proc3829873.chain_587	5
scaffold_6	alternate_exon	2479129	2479542	-	asmbl_48078	none	STRG.7236.2	1	STRG.7236.1,STRG.7236.3,blat.proc3829889.chain_3219,blat.proc3829889.chain_3220,blat.proc3829889.chain_3223	5
scaffold_24	ends_in_intron	6825516	6825516	+	asmbl_32353	none	blat.proc3829883.chain_3663	1	STRG.26717.1,STRG.26717.2,STRG.26717.3,STRG.26717.4	4
scaffold_1	starts_in_intron	5740774	5740774	+	asmbl_1767,asmbl_1772	none	Trinity_GG_223_c0_g1_i6,blat.proc3829871.chain_369,blat.proc3829871.chain_374	3	STRG.382.2,blat.proc3829871.chain_370,blat.proc3829871.chain_371,blat.proc3829871.chain_373,blat.proc3829871.chain_375	5
scaffold_2	skipped_exon	7863293	7865249	-	asmbl_23310	none	STRG.2082.2,blat.proc3829887.chain_1980	2	STRG.2082.1,blat.proc3829887.chain_1979	2
scaffold_7	starts_in_intron	13867290	13867290	-	asmbl_50137	none	STRG.9469.2,blat.proc3829891.chain_1675	2	STRG.9469.1	1
scaffold_2	alt_acceptor	3517724	3517725	-	asmbl_23011	none	STRG.1786.2	1	STRG.1786.1	1
scaffold_3	starts_in_intron	14312211	14312211	-	asmbl_39301	none	blat.proc3829887.chain_3568	1	STRG.3768.1,STRG.3768.2,STRG.3768.3,Trinity_GG_19099_c0_g1_i4,blat.proc3829887.chain_3566,blat.proc3829887.chain_3567	6
scaffold_3	retained_intron	10275118	10275967	+	asmbl_40208	none	blat.proc3829871.chain_3623	1	STRG.3461.1,STRG.3461.3,STRG.3461.4,blat.proc3829871.chain_3621,blat.proc3829871.chain_3622,blat.proc3829871.chain_3624	6
scaffold_14	retained_intron	15753825	15753858	-	asmbl_13728	none	STRG.17800.1,Trinity_GG_26971_c0_g1_i1,blat.proc3829895.chain_2452	3	STRG.17800.2	1
scaffold_22	starts_in_intron	3831471	3831471	-	asmbl_29959	none	STRG.24797.1	1	STRG.24797.2,blat.proc3829899.chain_1891	2
scaffold_19	starts_in_intron	11482545	11482545	-	asmbl_21618	none	blat.proc3829897.chain_3183	1	STRG.22477.1,STRG.22477.3,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184,blat.proc3829897.chain_3187,blat.proc3829897.chain_3192	6
scaffold_15	alternate_exon	8044084	8044179	-	asmbl_15347,asmbl_15348	none	STRG.18369.3,STRG.18369.4	2	STRG.18369.1,STRG.18369.2,blat.proc3829895.chain_3067	3
scaffold_11	alternate_exon	190514	194414	+	asmbl_5234	none	STRG.13240.1,blat.proc3829877.chain_1752	2	STRG.13240.2,Trinity_GG_7280_c0_g1_i2,blat.proc3829877.chain_1750	3
scaffold_28	alt_donor	4194282	4194283	-	asmbl_37522	none	STRG.29591.1,blat.proc3829901.chain_2720	2	STRG.29591.2,blat.proc3829901.chain_2718	2
scaffold_7	alternate_exon	8558303	8563867	-	asmbl_49828	none	STRG.9077.2,Trinity_GG_22138_c0_g1_i1,blat.proc3829891.chain_1340	3	blat.proc3829891.chain_1367	1
scaffold_6	alt_donor	1750766	1750767	-	asmbl_48062,asmbl_48065	none	STRG.7224.4,STRG.7224.5,blat.proc3829889.chain_3171	3	STRG.7224.1,STRG.7224.3,STRG.7224.6,blat.proc3829889.chain_3170,blat.proc3829889.chain_3174	5
scaffold_22	retained_exon	9718551	9719198	+	asmbl_29600	none	STRG.25292.3	1	STRG.25292.2	1
scaffold_15	alt_acceptor	14327819	14327820	-	asmbl_15728	none	blat.proc3829895.chain_3603	1	STRG.18855.3	1
scaffold_10	ends_in_intron	5494843	5494843	-	asmbl_3282,asmbl_3283	none	blat.proc3829893.chain_815,blat.proc3829893.chain_816	2	STRG.12375.1,blat.proc3829893.chain_814	2
scaffold_27	ends_in_intron	2787148	2787148	+	asmbl_36067	none	blat.proc3829885.chain_1754	1	STRG.28736.1,blat.proc3829885.chain_1753,blat.proc3829885.chain_1755,blat.proc3829885.chain_1756	4
scaffold_10	alt_acceptor	9375923	9375924	+	asmbl_4650	none	STRG.12680.1	1	blat.proc3829877.chain_1199	1
scaffold_17	alternate_exon	3960773	3960852	-	asmbl_18873	none	STRG.20139.2,blat.proc3829897.chain_1065	2	STRG.20139.1,blat.proc3829897.chain_1064	2
scaffold_9	alt_donor	15387511	15387512	+	asmbl_54537,asmbl_54538,asmbl_54540,asmbl_54542	none	STRG.11728.1,STRG.11728.2,blat.proc3829877.chain_488,blat.proc3829877.chain_490,blat.proc3829877.chain_491,blat.proc3829877.chain_492	6	blat.proc3829877.chain_489,blat.proc3829877.chain_493	2
scaffold_6	alt_acceptor	17886596	17886597	+	asmbl_47739	none	Trinity_GG_4642_c0_g1_i2,blat.proc3829875.chain_832	2	STRG.8475.3,Trinity_GG_4642_c0_g1_i1,Trinity_GG_4642_c0_g1_i3,blat.proc3829875.chain_827,blat.proc3829875.chain_829	5
scaffold_11	alternate_exon	8382145	8385126	+	asmbl_5722	none	STRG.13842.1,blat.proc3829877.chain_2290	2	STRG.13842.2,blat.proc3829877.chain_2289	2
scaffold_13	ends_in_intron	6610335	6610335	+	asmbl_10934,asmbl_10935	none	STRG.15936.4,blat.proc3829879.chain_617	2	STRG.15936.2,blat.proc3829879.chain_614	2
scaffold_25	retained_exon	5428901	5428964	+	asmbl_33563	none	STRG.27435.1,blat.proc3829885.chain_453	2	blat.proc3829885.chain_455	1
scaffold_15	ends_in_intron	2800590	2800590	+	asmbl_14024	none	Trinity_GG_9913_c0_g1_i3,blat.proc3829879.chain_2694	2	STRG.18052.1,blat.proc3829879.chain_2693	2
scaffold_24	spliced_intron	1945924	1946132	-	asmbl_32744,asmbl_32745	none	STRG.26401.1,STRG.26401.2	2	STRG.26401.3	1
scaffold_340	alternate_exon	5571	5879	+	asmbl_40968	none	Trinity_GG_16762_c0_g1_i1,blat.proc3829885.chain_3305	2	STRG.30268.1	1
scaffold_17	alt_acceptor	10037074	10037075	-	asmbl_19272,asmbl_19274,asmbl_19275,asmbl_19276	none	STRG.20608.2,STRG.20608.3,STRG.20608.5,STRG.20608.6,Trinity_GG_28623_c0_g1_i4,blat.proc3829897.chain_1587	6	STRG.20608.1,Trinity_GG_28623_c0_g1_i2,blat.proc3829897.chain_1586	3
scaffold_1	spliced_intron	12410452	12410983	+	asmbl_2197	none	STRG.853.2	1	Trinity_GG_524_c0_g1_i1,blat.proc3829871.chain_942	2
scaffold_14	alt_acceptor	8610948	8610949	-	asmbl_13308	none	STRG.17280.2,blat.proc3829895.chain_1989	2	STRG.17280.1,blat.proc3829895.chain_1992	2
scaffold_17	retained_intron	9868526	9868619	-	asmbl_19263	none	STRG.20591.2	1	STRG.20591.1,STRG.20591.3,blat.proc3829897.chain_1549,blat.proc3829897.chain_1550	4
scaffold_24	ends_in_intron	5931605	5931605	+	asmbl_32265	none	Trinity_GG_14738_c3_g1_i1,blat.proc3829883.chain_3553	2	STRG.26645.1,blat.proc3829883.chain_3535,blat.proc3829883.chain_3538,blat.proc3829883.chain_3543,blat.proc3829883.chain_3545,blat.proc3829883.chain_3547,blat.proc3829883.chain_3548	7
scaffold_28	alt_acceptor	6926103	6926104	-	asmbl_37692	none	STRG.29744.3,blat.proc3829901.chain_2887	2	STRG.29744.2,blat.proc3829901.chain_2889	2
scaffold_25	retained_intron	8705024	8705177	+	asmbl_33747,asmbl_33753	none	Trinity_GG_15273_c0_g1_i6,Trinity_GG_15273_c0_g1_i8,blat.proc3829885.chain_697,blat.proc3829885.chain_700	4	blat.proc3829885.chain_691,blat.proc3829885.chain_702	2
scaffold_17	alt_acceptor	14546346	14546347	+	asmbl_18530	none	STRG.20918.1	1	STRG.20918.3,STRG.20918.4,STRG.20918.5,blat.proc3829881.chain_1763	4
scaffold_15	alternate_exon	10880862	10881691	-	asmbl_15479	none	STRG.18561.2,blat.proc3829895.chain_3299	2	STRG.18561.3,Trinity_GG_27423_c1_g1_i1,blat.proc3829895.chain_3300	3
scaffold_3	alternate_exon	3245921	3246437	+	asmbl_39902,asmbl_39908	none	Trinity_GG_1771_c0_g1_i2,blat.proc3829871.chain_3304,blat.proc3829871.chain_3307	3	STRG.3087.1,STRG.3087.4,Trinity_GG_1771_c0_g1_i6,blat.proc3829871.chain_3299,blat.proc3829871.chain_3308	5
scaffold_25	alt_acceptor	3086686	3086687	-	asmbl_34079,asmbl_34080,asmbl_34081,asmbl_34082	none	blat.proc3829901.chain_488,blat.proc3829901.chain_489,blat.proc3829901.chain_490,blat.proc3829901.chain_491	4	STRG.27230.1,STRG.27230.2,STRG.27230.3	3
scaffold_3	starts_in_intron	6822015	6822015	+	asmbl_40093	none	blat.proc3829871.chain_3443	1	STRG.3304.1,blat.proc3829871.chain_3442	2
scaffold_26	starts_in_intron	4594661	4594661	-	asmbl_34841	none	STRG.28165.2,blat.proc3829901.chain_1358	2	STRG.28165.3,blat.proc3829901.chain_1354	2
scaffold_1	retained_intron	4619268	4619989	+	asmbl_1681,asmbl_1682,asmbl_1684	none	STRG.295.1,STRG.295.2,STRG.295.4,blat.proc3829871.chain_329	4	STRG.295.3	1
scaffold_6	alt_donor	7543873	7543874	+	asmbl_47013	none	STRG.7648.2,blat.proc3829875.chain_3	2	STRG.7648.1,blat.proc3829875.chain_2	2
scaffold_27	starts_in_intron	3013208	3013208	+	asmbl_36130	none	Trinity_GG_15901_c0_g2_i1,blat.proc3829885.chain_1783	2	STRG.28769.1	1
scaffold_8	alt_donor	18434348	18434349	+	asmbl_52547	none	STRG.10734.1,blat.proc3829875.chain_3190	2	STRG.10734.2	1
scaffold_3	alternate_exon	14215721	14215865	-	asmbl_39288	none	STRG.3755.1	1	STRG.3755.2	1
scaffold_21	alternate_exon	7519876	7519983	+	asmbl_28762	none	Trinity_GG_13450_c0_g1_i1,blat.proc3829883.chain_1418	2	STRG.24274.1,Trinity_GG_13450_c0_g1_i2,blat.proc3829883.chain_1419	3
scaffold_2	alternate_exon	8855524	8855624	+	asmbl_24679	none	STRG.2138.1,Trinity_GG_1207_c0_g1_i1,blat.proc3829871.chain_2246	3	STRG.2138.3	1
scaffold_11	ends_in_intron	8432333	8432333	+	asmbl_5735	none	Trinity_GG_7631_c0_g2_i2,blat.proc3829877.chain_2328	2	STRG.13849.1,STRG.13849.3,Trinity_GG_7631_c0_g2_i1,Trinity_GG_7631_c0_g2_i4,blat.proc3829877.chain_2329,blat.proc3829877.chain_2331	6
scaffold_24	starts_in_intron	8699397	8699397	+	asmbl_32441	none	blat.proc3829883.chain_3743	1	STRG.26862.1,STRG.26862.2,blat.proc3829883.chain_3742	3
scaffold_17	retained_intron	14729874	14729921	+	asmbl_18540	none	STRG.20932.1,Trinity_GG_11494_c0_g1_i1,blat.proc3829881.chain_1750	3	STRG.20932.2	1
scaffold_5	spliced_intron	12842443	12842549	+	asmbl_44496,asmbl_44499	none	STRG.6508.1,STRG.6508.2,Trinity_GG_3545_c0_g1_i3,blat.proc3829873.chain_2643	4	STRG.6508.3,Trinity_GG_3545_c0_g1_i1,blat.proc3829873.chain_2642	3
scaffold_11	skipped_exon	17293563	17294318	-	asmbl_7240	none	STRG.14379.1,blat.proc3829893.chain_2786	2	STRG.14379.2,blat.proc3829893.chain_2787	2
scaffold_21	ends_in_intron	8005863	8005863	+	asmbl_28792	none	blat.proc3829883.chain_1464	1	STRG.24326.1,STRG.24326.2,blat.proc3829883.chain_1460,blat.proc3829883.chain_1461,blat.proc3829883.chain_1463	5
scaffold_16	alternate_exon	14521834	14522291	-	asmbl_16634	none	STRG.19818.1	1	STRG.19818.2,blat.proc3829897.chain_757	2
scaffold_23	spliced_intron	9425520	9425631	+	asmbl_31091,asmbl_31092	none	STRG.26145.2,STRG.26145.3	2	STRG.26145.1,Trinity_GG_14454_c0_g1_i1,blat.proc3829883.chain_3058	3
scaffold_19	alt_donor	12491982	12491983	+	asmbl_22617	none	STRG.22568.5,blat.proc3829881.chain_3533	2	STRG.22568.1,STRG.22568.2,STRG.22568.4,STRG.22568.6,blat.proc3829881.chain_3535,blat.proc3829881.chain_3536,blat.proc3829881.chain_3537,blat.proc3829881.chain_3538	8
scaffold_11	spliced_intron	1605150	1605247	-	asmbl_6418	none	STRG.13326.1	1	STRG.13326.2	1
scaffold_3	alt_acceptor	13989078	13989079	+	asmbl_40434,asmbl_40442	none	STRG.3741.1,STRG.3741.5,Trinity_GG_2070_c0_g1_i2,blat.proc3829873.chain_86	4	STRG.3741.3,STRG.3741.4,Trinity_GG_2070_c0_g1_i1,blat.proc3829873.chain_88	4
scaffold_26	ends_in_intron	9749923	9749923	+	asmbl_35776	none	STRG.28496.1	1	STRG.28496.2	1
scaffold_8	alt_acceptor	6900631	6900632	+	asmbl_51958,asmbl_51959	none	STRG.10042.2,STRG.10042.3	2	STRG.10042.1,blat.proc3829875.chain_2536,blat.proc3829875.chain_2537,blat.proc3829875.chain_2539,blat.proc3829875.chain_2542	5
scaffold_16	retained_intron	8294415	8294498	+	asmbl_17186	none	STRG.19456.1,blat.proc3829881.chain_326	2	STRG.19456.2,blat.proc3829881.chain_327	2
scaffold_5	alt_donor	5865416	5865417	-	asmbl_45454	none	STRG.5992.2	1	STRG.5992.3	1
scaffold_27	alt_donor	2694849	2694850	-	asmbl_36798	none	STRG.28731.2	1	STRG.28731.1,blat.proc3829901.chain_1929,blat.proc3829901.chain_1930	3
scaffold_6	retained_intron	3218305	3218462	-	asmbl_48177,asmbl_48178	none	STRG.7319.2,STRG.7319.3,blat.proc3829889.chain_3332,blat.proc3829889.chain_3333	4	STRG.7319.1,blat.proc3829889.chain_3331	2
scaffold_3	retained_exon	14807664	14807675	-	asmbl_39378	none	blat.proc3829887.chain_3572	1	STRG.3821.1,blat.proc3829887.chain_3571	2
scaffold_10	spliced_intron	13300486	13300597	+	asmbl_4863,asmbl_4864	none	STRG.12927.1,blat.proc3829877.chain_1482,blat.proc3829877.chain_1483	3	blat.proc3829877.chain_1484	1
scaffold_5	alt_acceptor	5045217	5045218	+	asmbl_43995	none	blat.proc3829873.chain_2109,blat.proc3829873.chain_2113	2	STRG.5951.1,STRG.5951.2,blat.proc3829873.chain_2107,blat.proc3829873.chain_2112	4
scaffold_25	alt_acceptor	8484358	8484359	-	asmbl_34419	none	STRG.27663.1,blat.proc3829901.chain_915	2	STRG.27663.2	1
scaffold_6	alt_acceptor	18218562	18218563	-	asmbl_49169	none	STRG.8487.1	1	STRG.8487.2	1
scaffold_11	alt_acceptor	11935482	11935483	-	asmbl_7019,asmbl_7022	none	STRG.14160.4,STRG.14160.5	2	STRG.14160.1,STRG.14160.2,STRG.14160.3	3
scaffold_18	retained_exon	3917889	3918460	-	asmbl_19824	none	STRG.21192.4	1	STRG.21192.2	1
scaffold_7	skipped_exon	5183050	5183703	-	asmbl_49690	none	STRG.8845.3	1	STRG.8845.1,blat.proc3829891.chain_1159	2
scaffold_7	starts_in_intron	10408988	10408988	+	asmbl_51003,asmbl_51004	none	STRG.9214.3,STRG.9214.4	2	STRG.9214.2	1
scaffold_1	spliced_intron	11626963	11627419	-	asmbl_655,asmbl_656	none	STRG.767.1,Trinity_GG_17396_c0_g1_i3,Trinity_GG_17396_c0_g1_i4,blat.proc3829887.chain_614	4	blat.proc3829887.chain_615,blat.proc3829887.chain_617	2
scaffold_4	alt_donor	18291793	18291794	+	asmbl_43439	none	STRG.5424.3	1	STRG.5424.1,STRG.5424.2,STRG.5424.4,STRG.5424.5,STRG.5424.6,blat.proc3829873.chain_1664,blat.proc3829873.chain_1665,blat.proc3829873.chain_1666	8
scaffold_13	alt_donor	3733822	3733823	+	asmbl_10710,asmbl_10711,asmbl_10713	none	STRG.15686.2,blat.proc3829879.chain_392	2	STRG.15686.1,blat.proc3829879.chain_394	2
scaffold_9	spliced_intron	9707335	9707760	+	asmbl_54216	none	STRG.11336.1,blat.proc3829877.chain_110	2	STRG.11336.3,Trinity_GG_6324_c1_g1_i12,blat.proc3829877.chain_113,blat.proc3829877.chain_114	4
scaffold_22	alt_acceptor	10682198	10682199	-	asmbl_30385	none	STRG.25391.1	1	STRG.25391.2	1
scaffold_7	starts_in_intron	2500772	2500772	-	asmbl_49568	none	blat.proc3829891.chain_1014	1	STRG.8677.1,STRG.8677.2,blat.proc3829891.chain_1016,blat.proc3829891.chain_1017	4
scaffold_3	starts_in_intron	14432191	14432191	-	asmbl_39320	none	Trinity_GG_19066_c0_g1_i2,blat.proc3829887.chain_3508	2	STRG.3781.1,STRG.3781.2,STRG.3781.3,Trinity_GG_19066_c0_g1_i3,Trinity_GG_19066_c0_g1_i4,blat.proc3829887.chain_3506,blat.proc3829887.chain_3507	7
scaffold_5	starts_in_intron	3495063	3495063	+	asmbl_43884	none	blat.proc3829873.chain_2004	1	STRG.5819.1,blat.proc3829873.chain_2005	2
scaffold_8	alternate_exon	11919412	11920348	-	asmbl_53173	none	STRG.10381.1	1	STRG.10381.2	1
scaffold_7	skipped_exon	12270450	12271204	+	asmbl_51110,asmbl_51116	none	STRG.9313.2,STRG.9313.3,STRG.9313.5,Trinity_GG_5141_c0_g1_i1,Trinity_GG_5141_c0_g1_i2,blat.proc3829875.chain_1714	6	STRG.9313.7,Trinity_GG_5141_c0_g1_i8,blat.proc3829875.chain_1713	3
scaffold_5	alt_donor	18698542	18698543	-	asmbl_46228	none	STRG.6987.2	1	STRG.6987.1,STRG.6987.3	2
scaffold_6	spliced_intron	8582069	8582179	+	asmbl_47090,asmbl_47091	none	STRG.7732.4,blat.proc3829875.chain_110	2	STRG.7732.2,STRG.7732.3	2
scaffold_19	starts_in_intron	13124972	13124972	-	asmbl_21816	none	blat.proc3829897.chain_3387	1	STRG.22618.1,blat.proc3829897.chain_3386	2
scaffold_12	alt_donor	8915537	8915538	+	asmbl_8805	none	STRG.14884.2	1	STRG.14884.1,blat.proc3829877.chain_3414	2
scaffold_4	ends_in_intron	16577649	16577649	+	asmbl_43312	none	blat.proc3829873.chain_1502	1	STRG.5238.2,STRG.5238.3	2
scaffold_15	alternate_exon	11399940	11401714	-	asmbl_15516	none	blat.proc3829895.chain_3372	1	STRG.18596.4,STRG.18596.6	2
scaffold_14	skipped_exon	1375462	1376687	-	asmbl_12857	none	blat.proc3829895.chain_1490	1	STRG.16775.1,STRG.16775.2,STRG.16775.3,blat.proc3829895.chain_1487,blat.proc3829895.chain_1488,blat.proc3829895.chain_1489	6
scaffold_6	starts_in_intron	3805810	3805810	+	asmbl_46808	none	Trinity_GG_4055_c0_g1_i10,blat.proc3829873.chain_3520	2	STRG.7379.1,STRG.7379.2,STRG.7379.3,STRG.7379.4,STRG.7379.5	5
scaffold_23	alt_acceptor	9956730	9956731	-	asmbl_31829,asmbl_31831,asmbl_31832	none	STRG.26184.1,STRG.26184.2,blat.proc3829899.chain_3241,blat.proc3829899.chain_3243	4	STRG.26184.3	1
scaffold_7	spliced_intron	2509920	2510092	-	asmbl_49572	none	STRG.8674.1,Trinity_GG_21970_c0_g1_i1,blat.proc3829891.chain_1049	3	Trinity_GG_21970_c0_g1_i2,blat.proc3829891.chain_1048	2
scaffold_4	retained_intron	14618979	14619065	+	asmbl_43233	none	blat.proc3829873.chain_1429	1	STRG.5085.1,blat.proc3829873.chain_1430	2
scaffold_14	ends_in_intron	15243477	15243477	+	asmbl_12566	none	blat.proc3829879.chain_2421	1	STRG.17736.1,blat.proc3829879.chain_2420	2
scaffold_4	starts_in_intron	6191241	6191241	-	asmbl_41402,asmbl_41405	none	STRG.4487.2,blat.proc3829889.chain_541	2	STRG.4487.1,STRG.4487.3,Trinity_GG_19491_c0_g1_i3,blat.proc3829889.chain_542,blat.proc3829889.chain_543	5
scaffold_16	starts_in_intron	4064149	4064149	-	asmbl_16221	none	blat.proc3829897.chain_231	1	STRG.19211.1,STRG.19211.2,blat.proc3829897.chain_228,blat.proc3829897.chain_229	4
scaffold_11	starts_in_intron	11998792	11998792	-	asmbl_7036	none	blat.proc3829893.chain_2516	1	STRG.14111.1,STRG.14111.3,STRG.14111.4,Trinity_GG_24898_c0_g1_i1,Trinity_GG_24898_c0_g1_i3,Trinity_GG_24898_c0_g1_i4,blat.proc3829893.chain_2513,blat.proc3829893.chain_2515	8
scaffold_4	retained_exon	248696	248852	+	asmbl_42418	none	STRG.4120.2	1	STRG.4120.1	1
scaffold_340	alt_acceptor	1023	1024	+	asmbl_40967	none	STRG.30267.1	1	STRG.30267.3,STRG.30267.4	2
scaffold_12	starts_in_intron	6385004	6385004	+	asmbl_8634	none	Trinity_GG_8128_c0_g1_i2,blat.proc3829877.chain_3199	2	STRG.14722.1,blat.proc3829877.chain_3200	2
scaffold_21	spliced_intron	6818680	6818878	+	asmbl_28718	none	STRG.24196.1,blat.proc3829883.chain_1300	2	blat.proc3829883.chain_1301,blat.proc3829883.chain_1302,blat.proc3829883.chain_1303,blat.proc3829883.chain_1304	4
scaffold_10	skipped_exon	5390028	5390782	+	asmbl_4444	none	STRG.12356.1,blat.proc3829877.chain_992	2	STRG.12356.2	1
scaffold_6	alt_acceptor	3285763	3285764	-	asmbl_48183	none	STRG.7327.1	1	STRG.7327.2,STRG.7327.3,blat.proc3829889.chain_3353	3
scaffold_24	alt_acceptor	7163771	7163772	+	asmbl_32377	none	STRG.26743.1,blat.proc3829883.chain_3645	2	STRG.26743.2	1
scaffold_5	spliced_intron	10296210	10296333	-	asmbl_45719,asmbl_45723,asmbl_45724,asmbl_45725	none	STRG.6324.1,STRG.6324.2,STRG.6324.3,blat.proc3829889.chain_2411,blat.proc3829889.chain_2412	5	blat.proc3829889.chain_2410	1
scaffold_5	starts_in_intron	7029787	7029787	+	asmbl_44139	none	Trinity_GG_3337_c1_g1_i4,blat.proc3829873.chain_2261	2	STRG.6108.1,STRG.6108.2,STRG.6108.3,STRG.6108.4,blat.proc3829873.chain_2262	5
scaffold_9	retained_exon	8939254	8939364	-	asmbl_55113,asmbl_55114,asmbl_55116	none	STRG.11268.1,blat.proc3829891.chain_3360,blat.proc3829891.chain_3364	3	STRG.11268.2,blat.proc3829891.chain_3363	2
scaffold_16	starts_in_intron	13235269	13235269	-	asmbl_16585	none	Trinity_GG_28077_c0_g1_i1	1	STRG.19759.1,blat.proc3829897.chain_700	2
scaffold_2	alt_donor	14434184	14434185	+	asmbl_24961	none	STRG.2445.2,blat.proc3829871.chain_2602	2	STRG.2445.1	1
scaffold_21	alternate_exon	27998	28225	-	asmbl_27290	none	STRG.23697.2,Trinity_GG_30205_c0_g1_i2,blat.proc3829899.chain_721	3	STRG.23697.1,Trinity_GG_30205_c0_g1_i1,blat.proc3829899.chain_722	3
scaffold_2	ends_in_intron	690883	690883	+	asmbl_24118	none	blat.proc3829871.chain_1529	1	STRG.1553.4	1
scaffold_12	alternate_exon	7507621	7509240	-	asmbl_7721	none	Trinity_GG_25281_c2_g1_i1,blat.proc3829893.chain_3226	2	STRG.14818.2	1
scaffold_8	alternate_exon	17495325	17495474	+	asmbl_52476	none	STRG.10668.4	1	STRG.10668.1,STRG.10668.3,blat.proc3829875.chain_3152,blat.proc3829875.chain_3153,blat.proc3829875.chain_3156,blat.proc3829875.chain_3157,blat.proc3829875.chain_3158	7
scaffold_17	alt_donor	14040943	14040944	+	asmbl_18496	none	STRG.20863.3	1	STRG.20863.2	1
scaffold_15	alternate_exon	15345685	15346020	+	asmbl_14703	none	STRG.18908.2	1	STRG.18908.4,Trinity_GG_10364_c0_g1_i1,blat.proc3829879.chain_3494	3
scaffold_6	retained_intron	13064215	13064365	-	asmbl_48810,asmbl_48812,asmbl_48813	none	STRG.8056.1,STRG.8056.3,STRG.8056.4,blat.proc3829891.chain_351	4	STRG.8056.2	1
scaffold_20	alternate_exon	786496	786804	+	asmbl_25532	none	blat.proc3829881.chain_3647	1	STRG.22770.1,blat.proc3829881.chain_3646	2
scaffold_12	spliced_intron	12451819	12451938	+	asmbl_8972	none	STRG.15137.4	1	STRG.15137.1	1
scaffold_13	starts_in_intron	13709375	13709375	-	asmbl_10123	none	blat.proc3829895.chain_1163	1	blat.proc3829895.chain_1162	1
scaffold_11	retained_intron	932741	932796	+	asmbl_5275	none	STRG.13279.1,blat.proc3829877.chain_1799	2	STRG.13279.2	1
scaffold_17	alt_donor	607168	607169	-	asmbl_18673	none	STRG.19894.3	1	STRG.19894.1,STRG.19894.2	2
scaffold_16	starts_in_intron	7517957	7517957	+	asmbl_17139,asmbl_17142	none	STRG.19391.3,Trinity_GG_10593_c3_g1_i1,blat.proc3829881.chain_226	3	STRG.19391.1,Trinity_GG_10593_c3_g1_i2,blat.proc3829881.chain_225	3
scaffold_2	starts_in_intron	17483075	17483075	-	asmbl_23743	none	blat.proc3829887.chain_2474	1	STRG.2633.1,blat.proc3829887.chain_2473	2
scaffold_2	starts_in_intron	16357487	16357487	+	asmbl_25152	none	STRG.2573.4	1	STRG.2573.1,blat.proc3829871.chain_2761	2
scaffold_3	spliced_intron	18947965	18948081	+	asmbl_40712	none	STRG.4064.1,blat.proc3829873.chain_457	2	blat.proc3829873.chain_456	1
scaffold_13	alt_acceptor	3748307	3748308	+	asmbl_10722,asmbl_10723,asmbl_10724	none	STRG.15683.1,STRG.15683.2,Trinity_GG_8626_c0_g1_i4,blat.proc3829879.chain_382	4	Trinity_GG_8626_c0_g1_i1,blat.proc3829879.chain_381	2
scaffold_24	retained_intron	9116511	9116764	+	asmbl_32514,asmbl_32515,asmbl_32516	none	blat.proc3829885.chain_101,blat.proc3829885.chain_102,blat.proc3829885.chain_98	3	STRG.26927.1,blat.proc3829885.chain_104,blat.proc3829885.chain_97	3
scaffold_2	retained_intron	13754062	13754214	-	asmbl_23539	none	blat.proc3829887.chain_2225	1	STRG.2371.1,blat.proc3829887.chain_2226,blat.proc3829887.chain_2227	3
scaffold_14	spliced_intron	8212830	8213288	-	asmbl_13237,asmbl_13238,asmbl_13240,asmbl_13242	none	STRG.17218.1,STRG.17218.2,STRG.17218.3,blat.proc3829895.chain_1928,blat.proc3829895.chain_1930,blat.proc3829895.chain_1931	6	blat.proc3829895.chain_1929	1
scaffold_21	skipped_exon	5773985	5776476	-	asmbl_27718,asmbl_27720,asmbl_27721	none	STRG.24099.1,blat.proc3829899.chain_1196,blat.proc3829899.chain_1198,blat.proc3829899.chain_1200	4	STRG.24099.2,STRG.24099.3,blat.proc3829899.chain_1199	3
scaffold_2	alternate_exon	20127723	20127811	-	asmbl_23899	none	STRG.2837.1	1	blat.proc3829871.chain_2940	1
scaffold_7	alt_donor	15053525	15053526	-	asmbl_50177	none	STRG.9515.2	1	blat.proc3829891.chain_1759	1
scaffold_4	spliced_intron	12571017	12571399	-	asmbl_41675	none	STRG.4898.2,blat.proc3829889.chain_966	2	blat.proc3829889.chain_967	1
scaffold_2	alternate_exon	14203487	14204169	-	asmbl_23591	none	STRG.2411.3	1	STRG.2411.1,STRG.2411.4,blat.proc3829887.chain_2297,blat.proc3829887.chain_2298	4
scaffold_24	retained_intron	10782528	10782651	-	asmbl_33211	none	blat.proc3829901.chain_292	1	STRG.27021.1,blat.proc3829901.chain_293,blat.proc3829901.chain_294,blat.proc3829901.chain_296	4
scaffold_13	retained_intron	400122	400388	-	asmbl_9312,asmbl_9313	none	Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i25,blat.proc3829895.chain_223,blat.proc3829895.chain_229	4	STRG.15428.1,STRG.15428.2,STRG.15428.3,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i7,Trinity_GG_25691_c0_g1_i8,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_220,blat.proc3829895.chain_221,blat.proc3829895.chain_222,blat.proc3829895.chain_224,blat.proc3829895.chain_226,blat.proc3829895.chain_230,blat.proc3829895.chain_232,blat.proc3829895.chain_233	17
scaffold_10	ends_in_intron	6038677	6038677	+	asmbl_4498	none	blat.proc3829877.chain_1056	1	STRG.12420.1,Trinity_GG_6888_c0_g1_i1,blat.proc3829877.chain_1055	3
scaffold_24	retained_intron	3655919	3656169	+	asmbl_32162	none	STRG.26528.5,Trinity_GG_14654_c0_g1_i1,blat.proc3829883.chain_3409	3	STRG.26528.2,blat.proc3829883.chain_3402,blat.proc3829883.chain_3405	3
scaffold_3	alternate_exon	11521874	11522040	+	asmbl_40310	none	STRG.3580.1,blat.proc3829871.chain_3683	2	STRG.3580.2,blat.proc3829871.chain_3684	2
scaffold_5	spliced_intron	108210	108423	-	asmbl_45143	none	STRG.5570.2	1	STRG.5570.1,Trinity_GG_20162_c0_g1_i5	2
scaffold_11	alternate_exon	8898837	8898983	-	asmbl_6866	none	STRG.13898.1	1	blat.proc3829893.chain_2309	1
scaffold_13	spliced_intron	8518137	8518344	+	asmbl_11120	none	STRG.16113.1,blat.proc3829879.chain_860	2	Trinity_GG_8862_c0_g1_i2	1
scaffold_14	spliced_intron	8415587	8415753	+	asmbl_12222,asmbl_12225	none	STRG.17265.1,blat.proc3829879.chain_2010,blat.proc3829879.chain_2011	3	STRG.17265.2,Trinity_GG_9512_c0_g1_i3,blat.proc3829879.chain_2012,blat.proc3829879.chain_2013	4
scaffold_1	spliced_intron	9254163	9254609	+	asmbl_1962	none	STRG.616.4,Trinity_GG_391_c0_g1_i3,blat.proc3829871.chain_683	3	STRG.616.1,STRG.616.2,Trinity_GG_391_c0_g1_i2,blat.proc3829871.chain_681	4
scaffold_19	spliced_intron	8218983	8219156	-	asmbl_21491,asmbl_21492	none	STRG.22259.1,STRG.22259.2,blat.proc3829897.chain_2994,blat.proc3829897.chain_2995	4	blat.proc3829897.chain_2993	1
scaffold_7	retained_exon	5916586	5916676	-	asmbl_49712,asmbl_49715	none	STRG.8887.1,STRG.8887.4,blat.proc3829891.chain_1165	3	STRG.8887.2,blat.proc3829891.chain_1167,blat.proc3829891.chain_1168	3
scaffold_27	alternate_exon	8934047	8934213	-	asmbl_37074	none	STRG.29117.1	1	STRG.29117.2	1
scaffold_22	alt_donor	10637546	10637547	-	asmbl_30380	none	STRG.25388.2,blat.proc3829899.chain_2497	2	STRG.25388.1,blat.proc3829899.chain_2496	2
scaffold_7	retained_exon	6036805	6036880	+	asmbl_50719	none	STRG.8898.1,Trinity_GG_4914_c0_g1_i5,blat.proc3829875.chain_1338	3	STRG.8898.2,Trinity_GG_4914_c0_g1_i1,blat.proc3829875.chain_1340	3
scaffold_4	alt_donor	18456239	18456240	-	asmbl_42119	none	STRG.5446.2,blat.proc3829889.chain_1457	2	STRG.5446.1,blat.proc3829889.chain_1456	2
scaffold_7	alt_acceptor	4514052	4514053	+	asmbl_50615,asmbl_50616	none	STRG.8814.1,Trinity_GG_4850_c0_g1_i1,Trinity_GG_4850_c0_g1_i2,blat.proc3829875.chain_1225,blat.proc3829875.chain_1226,blat.proc3829875.chain_1228	6	STRG.8814.3,blat.proc3829875.chain_1229	2
scaffold_3	alternate_exon	935560	935956	-	asmbl_38641	none	Trinity_GG_18622_c0_g1_i2,blat.proc3829887.chain_2738	2	blat.proc3829887.chain_2736	1
scaffold_15	alt_acceptor	2196860	2196861	+	asmbl_13992	none	STRG.17990.2	1	STRG.17990.1	1
scaffold_9	spliced_intron	2468905	2469096	-	asmbl_54840	none	STRG.10883.1,blat.proc3829891.chain_3003	2	blat.proc3829891.chain_3004	1
scaffold_6	spliced_intron	5197857	5197979	+	asmbl_46859,asmbl_46860,asmbl_46863,asmbl_46864,asmbl_46865,asmbl_46870	none	STRG.7489.2,STRG.7489.3,STRG.7489.5,Trinity_GG_4091_c0_g1_i10,Trinity_GG_4091_c0_g1_i6,blat.proc3829873.chain_3581,blat.proc3829873.chain_3582,blat.proc3829873.chain_3583,blat.proc3829873.chain_3585,blat.proc3829873.chain_3586,blat.proc3829873.chain_3587	11	STRG.7489.4,blat.proc3829873.chain_3589	2
scaffold_14	alt_donor	15565811	15565812	+	asmbl_12608	none	STRG.17784.3	1	STRG.17784.2,blat.proc3829879.chain_2468	2
scaffold_10	alt_donor	13002627	13002628	+	asmbl_4843	none	STRG.12901.3,blat.proc3829877.chain_1477	2	STRG.12901.2,blat.proc3829877.chain_1480	2
scaffold_8	alt_acceptor	11111141	11111142	+	asmbl_52184	none	STRG.10317.1,blat.proc3829875.chain_2832	2	STRG.10317.2,blat.proc3829875.chain_2834	2
scaffold_8	starts_in_intron	12911926	12911926	-	asmbl_53254	none	blat.proc3829891.chain_2570	1	STRG.10471.2,STRG.10471.3,STRG.10471.4	3
scaffold_5	starts_in_intron	9334242	9334242	-	asmbl_45656	none	Trinity_GG_20523_c0_g1_i2,blat.proc3829889.chain_2310	2	STRG.6248.1,Trinity_GG_20523_c0_g1_i1,blat.proc3829889.chain_2309	3
scaffold_7	alt_acceptor	4514092	4514093	+	asmbl_50617	none	STRG.8814.3,blat.proc3829875.chain_1229	2	STRG.8814.1,Trinity_GG_4850_c0_g1_i1,Trinity_GG_4850_c0_g1_i2,blat.proc3829875.chain_1225,blat.proc3829875.chain_1226,blat.proc3829875.chain_1228	6
scaffold_18	retained_intron	4724166	4724270	-	asmbl_19859	none	Trinity_GG_28910_c0_g1_i1,blat.proc3829897.chain_2123	2	STRG.21251.1,blat.proc3829897.chain_2124	2
scaffold_1	alternate_exon	8753178	8753403	-	asmbl_500	none	STRG.583.3,blat.proc3829887.chain_506	2	STRG.583.1,STRG.583.2,blat.proc3829887.chain_507,blat.proc3829887.chain_508	4
scaffold_2	retained_exon	7469728	7470198	-	asmbl_23286,asmbl_23289	none	STRG.2075.4,blat.proc3829887.chain_1892	2	Trinity_GG_18127_c0_g1_i8,blat.proc3829887.chain_1895	2
scaffold_14	retained_intron	5790758	5790843	-	asmbl_13075	none	Trinity_GG_26569_c1_g1_i2,blat.proc3829895.chain_1732	2	STRG.17031.1,blat.proc3829895.chain_1731,blat.proc3829895.chain_1733	3
scaffold_11	starts_in_intron	7036223	7036223	-	asmbl_6732	none	blat.proc3829893.chain_2166	1	STRG.13715.2,blat.proc3829893.chain_2167	2
scaffold_11	alternate_exon	3138023	3138080	-	asmbl_6510	none	blat.proc3829893.chain_1873	1	STRG.13434.1,STRG.13434.3,blat.proc3829893.chain_1872	3
scaffold_2	spliced_intron	7214953	7215092	+	asmbl_24574,asmbl_24579,asmbl_24581	none	STRG.2054.1,STRG.2054.2,Trinity_GG_1174_c0_g1_i5,Trinity_GG_1174_c0_g1_i7,blat.proc3829871.chain_2148,blat.proc3829871.chain_2154	6	STRG.2054.3,Trinity_GG_1174_c0_g1_i8,blat.proc3829871.chain_2151	3
scaffold_18	retained_intron	633666	633744	+	asmbl_20337	none	Trinity_GG_11554_c0_g1_i3,blat.proc3829881.chain_1872	2	STRG.20993.1,STRG.20993.2,STRG.20993.3,blat.proc3829881.chain_1870,blat.proc3829881.chain_1871	5
scaffold_18	starts_in_intron	5578608	5578608	-	asmbl_19899	none	blat.proc3829897.chain_2188	1	STRG.21301.1	1
scaffold_8	alt_donor	11851488	11851489	+	asmbl_52281	none	blat.proc3829875.chain_2973	1	blat.proc3829875.chain_2966,blat.proc3829875.chain_2972	2
scaffold_9	starts_in_intron	3805575	3805575	+	asmbl_53905	none	Trinity_GG_6122_c0_g1_i1	1	STRG.10990.2	1
scaffold_13	spliced_intron	16326282	16327028	-	asmbl_10263	none	STRG.16676.1,blat.proc3829895.chain_1348	2	STRG.16676.2,STRG.16676.3,blat.proc3829895.chain_1349	3
scaffold_6	starts_in_intron	3302309	3302309	-	asmbl_48187	none	blat.proc3829889.chain_3348	1	STRG.7332.1,blat.proc3829889.chain_3349	2
scaffold_8	spliced_intron	12693755	12693924	+	asmbl_52317,asmbl_52318,asmbl_52319,asmbl_52320,asmbl_52321,asmbl_52322,asmbl_52324	none	STRG.10436.1,STRG.10436.2,blat.proc3829875.chain_2945,blat.proc3829875.chain_2946,blat.proc3829875.chain_2947,blat.proc3829875.chain_2948,blat.proc3829875.chain_2949	7	blat.proc3829875.chain_2944	1
scaffold_1	spliced_intron	9254137	9254609	+	asmbl_1960	none	STRG.616.3,Trinity_GG_391_c0_g1_i1,blat.proc3829871.chain_680	3	STRG.616.1,STRG.616.2,Trinity_GG_391_c0_g1_i2,blat.proc3829871.chain_681	4
scaffold_1	starts_in_intron	14428713	14428713	+	asmbl_2374	none	blat.proc3829871.chain_1034	1	blat.proc3829871.chain_1036	1
scaffold_22	alternate_exon	511312	513535	-	asmbl_29852,asmbl_29853,asmbl_29854,asmbl_29855,asmbl_29863,asmbl_29865,asmbl_29868	none	STRG.24685.2,STRG.24685.3,STRG.24685.4,STRG.24685.5,Trinity_GG_30818_c0_g1_i13,Trinity_GG_30818_c0_g1_i17,Trinity_GG_30818_c0_g1_i19,blat.proc3829899.chain_1823,blat.proc3829899.chain_1824,blat.proc3829899.chain_1827,blat.proc3829899.chain_1830,blat.proc3829899.chain_1831,blat.proc3829899.chain_1836	13	Trinity_GG_30818_c0_g1_i8,blat.proc3829899.chain_1825	2
scaffold_10	skipped_exon	12818068	12819821	+	asmbl_4820	none	blat.proc3829877.chain_1430	1	STRG.12857.1,STRG.12857.2,blat.proc3829877.chain_1431	3
scaffold_6	retained_intron	7173679	7173782	+	asmbl_46993	none	blat.proc3829873.chain_3736	1	STRG.7621.1,STRG.7621.2,STRG.7621.3,STRG.7621.4,blat.proc3829873.chain_3739	5
scaffold_18	spliced_intron	633666	633744	+	asmbl_20335,asmbl_20336,asmbl_20338	none	STRG.20993.1,STRG.20993.2,STRG.20993.3,blat.proc3829881.chain_1870,blat.proc3829881.chain_1871	5	Trinity_GG_11554_c0_g1_i3,blat.proc3829881.chain_1872	2
scaffold_11	alt_donor	7924464	7924465	+	asmbl_5665	none	STRG.13793.1,Trinity_GG_7594_c0_g1_i3,blat.proc3829877.chain_2265	3	STRG.13793.3,Trinity_GG_7594_c0_g1_i4,blat.proc3829877.chain_2266	3
scaffold_2	retained_intron	9191502	9191609	-	asmbl_23379	none	Trinity_GG_18242_c0_g1_i12,blat.proc3829887.chain_2103	2	STRG.2167.1,STRG.2167.2,Trinity_GG_18242_c0_g1_i1,Trinity_GG_18242_c0_g1_i2,Trinity_GG_18242_c0_g1_i3,Trinity_GG_18242_c0_g1_i4,Trinity_GG_18242_c0_g1_i7,blat.proc3829887.chain_2099,blat.proc3829887.chain_2100,blat.proc3829887.chain_2101,blat.proc3829887.chain_2102,blat.proc3829887.chain_2104	12
scaffold_28	starts_in_intron	5023219	5023219	+	asmbl_38266	none	blat.proc3829885.chain_2642	1	STRG.29640.1,STRG.29640.2,blat.proc3829885.chain_2641,blat.proc3829885.chain_2643	4
scaffold_3	alternate_exon	8254403	8255632	+	asmbl_40167	none	Trinity_GG_1923_c0_g1_i1,blat.proc3829871.chain_3569	2	STRG.3399.2	1
scaffold_7	alt_donor	16834250	16834251	+	asmbl_51357	none	STRG.9589.1,blat.proc3829875.chain_2011,blat.proc3829875.chain_2012	3	STRG.9589.2	1
scaffold_16	retained_intron	14510761	14510867	-	asmbl_16627	none	Trinity_GG_28131_c0_g1_i2,blat.proc3829887.chain_3456,blat.proc3829897.chain_773	3	STRG.19819.1,blat.proc3829897.chain_770,blat.proc3829897.chain_771,blat.proc3829897.chain_772,blat.proc3829897.chain_774	5
scaffold_7	spliced_intron	13863191	13863810	-	asmbl_50135,asmbl_50137,asmbl_50139,asmbl_50140	none	STRG.9469.1,STRG.9469.2,blat.proc3829891.chain_1673,blat.proc3829891.chain_1674,blat.proc3829891.chain_1675	5	STRG.9469.3,blat.proc3829891.chain_1676,blat.proc3829891.chain_1677	3
scaffold_18	retained_intron	8726290	8726425	+	asmbl_20881,asmbl_20882	none	STRG.21533.5,STRG.21533.6,Trinity_GG_11882_c0_g1_i2,blat.proc3829881.chain_2486,blat.proc3829881.chain_2487	5	STRG.21533.1,STRG.21533.2,STRG.21533.3,blat.proc3829881.chain_2482,blat.proc3829881.chain_2483,blat.proc3829881.chain_2484,blat.proc3829881.chain_2485,blat.proc3829881.chain_2488	8
scaffold_1	starts_in_intron	16927458	16927458	-	asmbl_1022	none	STRG.1193.3	1	STRG.1193.2,blat.proc3829887.chain_986	2
scaffold_20	alternate_exon	6944662	6948279	-	asmbl_26771,asmbl_26773,asmbl_26774	none	STRG.23254.1,STRG.23254.2,STRG.23254.3,STRG.23254.5,blat.proc3829899.chain_235	5	STRG.23254.6,STRG.23254.7,blat.proc3829899.chain_237,blat.proc3829899.chain_238,blat.proc3829899.chain_239	5
scaffold_8	starts_in_intron	17665609	17665609	-	asmbl_53487	none	Trinity_GG_22949_c0_g1_i2,blat.proc3829891.chain_2838	2	STRG.10675.1,STRG.10675.2,blat.proc3829891.chain_2837	3
scaffold_21	spliced_intron	5594719	5594820	-	asmbl_27706	none	STRG.24077.1,blat.proc3829899.chain_1140	2	Trinity_GG_30435_c0_g1_i1,blat.proc3829899.chain_1141	2
scaffold_5	ends_in_intron	3935915	3935915	-	asmbl_45321	none	STRG.5857.1	1	STRG.5856.2	1
scaffold_7	retained_intron	12271120	12271204	+	asmbl_51111,asmbl_51113	none	STRG.9313.4,STRG.9313.6,Trinity_GG_5141_c0_g1_i5,Trinity_GG_5141_c0_g1_i6,blat.proc3829875.chain_1712,blat.proc3829875.chain_1715	6	STRG.9313.7,Trinity_GG_5141_c0_g1_i8,blat.proc3829875.chain_1713	3
scaffold_27	spliced_intron	314564	314644	-	asmbl_36612,asmbl_36613,asmbl_36615,asmbl_36616,asmbl_36617	none	STRG.28538.1,STRG.28538.2,STRG.28538.3,blat.proc3829901.chain_1671,blat.proc3829901.chain_1673	5	Trinity_GG_32948_c0_g1_i13	1
scaffold_27	ends_in_intron	3122167	3122167	+	asmbl_36148	none	blat.proc3829885.chain_1858	1	STRG.28776.1,blat.proc3829885.chain_1857	2
scaffold_2	alt_donor	4848020	4848021	-	asmbl_23131	none	STRG.1900.1,blat.proc3829887.chain_1817	2	STRG.1900.2	1
scaffold_11	retained_intron	15656260	15657450	-	asmbl_7178	none	Trinity_GG_25013_c1_g1_i1,blat.proc3829893.chain_2733,blat.proc3829893.chain_2738	3	STRG.14297.1,STRG.14297.2,blat.proc3829893.chain_2729,blat.proc3829893.chain_2730,blat.proc3829893.chain_2731,blat.proc3829893.chain_2732,blat.proc3829893.chain_2736,blat.proc3829893.chain_2737	8
scaffold_17	retained_exon	7849832	7849895	+	asmbl_18052,asmbl_18054	none	STRG.20399.1,blat.proc3829881.chain_1175	2	STRG.20399.3	1
scaffold_1	retained_intron	922856	922976	+	asmbl_1439	none	Trinity_GG_8_c0_g1_i2,blat.proc3829871.chain_16	2	STRG.48.3,blat.proc3829871.chain_15	2
scaffold_7	retained_exon	12271073	12271119	+	asmbl_51114,asmbl_51115	none	STRG.9313.7,Trinity_GG_5141_c0_g1_i8,blat.proc3829875.chain_1713	3	STRG.9313.2,STRG.9313.3,STRG.9313.5,Trinity_GG_5141_c0_g1_i1,Trinity_GG_5141_c0_g1_i2,blat.proc3829875.chain_1714	6
scaffold_17	skipped_exon	5095847	5097032	+	asmbl_17939	none	STRG.20226.2,blat.proc3829881.chain_978	2	STRG.20226.3,blat.proc3829897.chain_1178	2
scaffold_26	alt_acceptor	7788246	7788247	+	asmbl_35675	none	STRG.28387.1	1	STRG.28387.2	1
scaffold_2	retained_intron	7936735	7936885	+	asmbl_24637	none	Trinity_GG_1149_c0_g2_i1,blat.proc3829871.chain_2106	2	STRG.2090.1,Trinity_GG_1149_c0_g1_i4,Trinity_GG_1149_c0_g1_i5,blat.proc3829871.chain_2100,blat.proc3829871.chain_2104	5
scaffold_6	ends_in_intron	10837404	10837404	-	asmbl_48654	none	Trinity_GG_21488_c0_g1_i3,blat.proc3829891.chain_164	2	STRG.7892.1,Trinity_GG_21488_c0_g1_i1,blat.proc3829891.chain_166	3
scaffold_7	retained_intron	13953437	13953519	+	asmbl_51270,asmbl_51273	none	STRG.9478.2,Trinity_GG_5270_c0_g1_i3,Trinity_GG_5270_c0_g1_i5,blat.proc3829875.chain_1946,blat.proc3829875.chain_1949	5	STRG.9478.1,Trinity_GG_5270_c0_g1_i2,blat.proc3829875.chain_1947	3
scaffold_1	alt_acceptor	1966734	1966735	-	asmbl_92	none	STRG.119.2	1	STRG.119.1,blat.proc3829887.chain_32	2
scaffold_5	retained_intron	15044032	15044118	-	asmbl_46019	none	STRG.6692.4	1	STRG.6692.2,STRG.6692.9	2
scaffold_13	starts_in_intron	5538783	5538783	+	asmbl_10852	none	blat.proc3829879.chain_539	1	STRG.15838.1	1
scaffold_11	ends_in_intron	9018362	9018362	-	asmbl_6887	none	Trinity_GG_24749_c0_g2_i1,blat.proc3829893.chain_2280	2	STRG.13926.1,STRG.13926.2,blat.proc3829893.chain_2276,blat.proc3829893.chain_2277,blat.proc3829893.chain_2278,blat.proc3829893.chain_2279	6
scaffold_11	alternate_exon	34838	35870	-	asmbl_6341,asmbl_6342	none	STRG.13223.2,blat.proc3829893.chain_1684	2	STRG.13223.1,blat.proc3829893.chain_1683	2
scaffold_13	alt_donor	9242915	9242916	+	asmbl_11167,asmbl_11169	none	STRG.16173.2,STRG.16173.3,blat.proc3829879.chain_843	3	STRG.16173.1,blat.proc3829879.chain_844	2
scaffold_4	retained_intron	19753353	19753666	+	asmbl_43507	none	STRG.5561.2,Trinity_GG_3042_c0_g1_i4,blat.proc3829873.chain_1754	3	STRG.5561.1,STRG.5561.3,Trinity_GG_3042_c0_g1_i1,Trinity_GG_3042_c0_g1_i2,blat.proc3829873.chain_1752,blat.proc3829873.chain_1753	6
scaffold_26	alternate_exon	1323178	1329585	-	asmbl_34679	none	STRG.27898.3	1	blat.proc3829901.chain_1142	1
scaffold_7	spliced_intron	8296441	8297094	-	asmbl_49807	none	STRG.9056.4,blat.proc3829891.chain_1237	2	STRG.9056.2,STRG.9056.3,Trinity_GG_22080_c0_g1_i2,blat.proc3829891.chain_1236,blat.proc3829891.chain_1238	5
scaffold_14	spliced_intron	13882015	13882099	+	asmbl_12492,asmbl_12494	none	STRG.17650.1,blat.proc3829879.chain_2324,blat.proc3829879.chain_2325	3	blat.proc3829879.chain_2323	1
scaffold_19	alt_acceptor	11399608	11399609	+	asmbl_22498	none	STRG.22456.1,Trinity_GG_12421_c0_g1_i2,blat.proc3829881.chain_3392	3	STRG.22456.2	1
scaffold_10	starts_in_intron	8330534	8330534	-	asmbl_3495	none	STRG.12584.2	1	STRG.12584.3,Trinity_GG_24048_c0_g1_i4,blat.proc3829893.chain_1088	3
scaffold_1	retained_intron	1250261	1250375	-	asmbl_57	none	STRG.75.2,Trinity_GG_17023_c1_g1_i2,blat.proc3829885.chain_3674	3	STRG.75.1,Trinity_GG_17023_c1_g1_i1,blat.proc3829885.chain_3675	3
scaffold_10	starts_in_intron	7113627	7113627	+	asmbl_4545	none	Trinity_GG_6905_c0_g1_i5,blat.proc3829877.chain_1096	2	STRG.12521.1,STRG.12521.2,STRG.12521.4,blat.proc3829877.chain_1092,blat.proc3829877.chain_1094,blat.proc3829877.chain_1095	6
scaffold_27	starts_in_intron	9097054	9097054	-	asmbl_37078	none	blat.proc3829901.chain_2217	1	STRG.29150.1,blat.proc3829901.chain_2219	2
scaffold_12	alternate_exon	12303797	12303940	-	asmbl_8000	none	STRG.15116.2	1	STRG.15116.1	1
scaffold_6	starts_in_intron	10865344	10865344	+	asmbl_47236	none	STRG.7897.2,blat.proc3829875.chain_285	2	STRG.7897.1,blat.proc3829875.chain_286	2
scaffold_21	spliced_intron	2614872	2614971	+	asmbl_28432	none	STRG.23883.1,blat.proc3829883.chain_1044	2	blat.proc3829883.chain_1043	1
scaffold_15	retained_intron	6961759	6962168	+	asmbl_14211	none	Trinity_GG_10041_c0_g1_i2,blat.proc3829879.chain_2931	2	STRG.18295.1	1
scaffold_22	alt_acceptor	498065	498066	+	asmbl_29155	none	STRG.24682.3	1	STRG.24682.1,blat.proc3829883.chain_1656	2
scaffold_3	alt_donor	14189175	14189176	-	asmbl_39277	none	STRG.3759.5	1	STRG.3759.2,blat.proc3829887.chain_3546	2
scaffold_18	alternate_exon	1922501	1922563	+	asmbl_20418	none	STRG.21073.3,blat.proc3829881.chain_1933	2	STRG.21073.1,STRG.21073.2	2
scaffold_25	skipped_exon	4319201	4320037	+	asmbl_33484,asmbl_33485	none	STRG.27342.2,Trinity_GG_15082_c0_g1_i2,blat.proc3829885.chain_383,blat.proc3829885.chain_384	4	STRG.27342.1,STRG.27342.3,Trinity_GG_15082_c0_g1_i1,blat.proc3829885.chain_382,blat.proc3829885.chain_385	5
scaffold_2	spliced_intron	1322435	1322697	+	asmbl_24208	none	STRG.1604.5	1	STRG.1604.4,Trinity_GG_928_c0_g1_i1,blat.proc3829871.chain_1712	3
scaffold_14	retained_exon	2298111	2298222	+	asmbl_11828,asmbl_11832	none	STRG.16832.1,STRG.16832.2,blat.proc3829879.chain_1488	3	STRG.16832.3	1
scaffold_8	spliced_intron	10040800	10041091	-	asmbl_53089	none	STRG.10251.2,blat.proc3829891.chain_2366	2	STRG.10251.1,blat.proc3829891.chain_2365	2
scaffold_9	starts_in_intron	13949976	13949976	-	asmbl_55431	none	blat.proc3829891.chain_3736	1	STRG.11651.1,blat.proc3829891.chain_3734,blat.proc3829891.chain_3735	3
scaffold_11	alt_acceptor	8295678	8295679	+	asmbl_5709	none	STRG.13823.2	1	STRG.13823.1,Trinity_GG_7604_c0_g1_i2,blat.proc3829877.chain_2279	3
scaffold_11	retained_exon	6504884	6505023	+	asmbl_5595	none	STRG.13680.1,Trinity_GG_7529_c0_g1_i2,blat.proc3829877.chain_2155	3	STRG.13680.2	1
scaffold_1	spliced_intron	8651374	8651512	-	asmbl_484	none	STRG.572.5	1	STRG.572.2,STRG.572.4,Trinity_GG_17313_c0_g1_i2,blat.proc3829887.chain_452	4
scaffold_5	spliced_intron	18404543	18404691	+	asmbl_44914	none	STRG.6968.1,blat.proc3829873.chain_3067	2	blat.proc3829873.chain_3065	1
scaffold_7	ends_in_intron	11873104	11873104	-	asmbl_49983	none	Trinity_GG_22229_c0_g1_i5,blat.proc3829891.chain_1490	2	STRG.9297.1,STRG.9297.2	2
scaffold_13	retained_intron	6949079	6949233	-	asmbl_9775,asmbl_9776	none	STRG.15968.1,STRG.15968.6,Trinity_GG_25972_c0_g1_i5	3	STRG.15968.3	1
scaffold_5	starts_in_intron	12518024	12518024	-	asmbl_45841	none	STRG.6480.2	1	STRG.6480.1,blat.proc3829889.chain_2536	2
scaffold_15	spliced_intron	11301555	11302007	+	asmbl_14435	none	STRG.18591.1,blat.proc3829879.chain_3184	2	blat.proc3829879.chain_3187	1
scaffold_14	alternate_exon	6444846	6449781	-	asmbl_13117	none	STRG.17077.2,Trinity_GG_26609_c1_g1_i1,blat.proc3829895.chain_1810	3	Trinity_GG_26609_c0_g1_i3,blat.proc3829895.chain_1807,blat.proc3829895.chain_1809	3
scaffold_9	alt_acceptor	7712183	7712184	-	asmbl_55076	none	STRG.11211.2,Trinity_GG_23227_c0_g1_i3,blat.proc3829891.chain_3358	3	STRG.11211.1,Trinity_GG_23227_c0_g1_i1,blat.proc3829891.chain_3359	3
scaffold_24	starts_in_intron	7852306	7852306	+	asmbl_32404	none	Trinity_GG_14824_c0_g1_i2,blat.proc3829883.chain_3704	2	blat.proc3829883.chain_3707	1
scaffold_13	spliced_intron	2507240	2507489	+	asmbl_10603	none	STRG.15546.2,Trinity_GG_8559_c0_g1_i1,blat.proc3829879.chain_271	3	STRG.15546.3,Trinity_GG_8559_c0_g1_i3,Trinity_GG_8559_c0_g1_i4,blat.proc3829879.chain_269,blat.proc3829879.chain_270	5
scaffold_3	retained_exon	14576165	14576217	-	asmbl_39346	none	STRG.3795.1,blat.proc3829887.chain_3613	2	STRG.3795.2,blat.proc3829887.chain_3612	2
scaffold_7	spliced_intron	8296258	8296345	-	asmbl_49807,asmbl_49809	none	STRG.9056.2,STRG.9056.4,blat.proc3829891.chain_1237,blat.proc3829891.chain_1238	4	STRG.9056.3,Trinity_GG_22080_c0_g1_i2,blat.proc3829891.chain_1236	3
scaffold_1	starts_in_intron	14280956	14280956	+	asmbl_2350	none	Trinity_GG_618_c0_g1_i1,blat.proc3829871.chain_1114	2	STRG.1022.1,Trinity_GG_618_c0_g1_i2,blat.proc3829871.chain_1115	3
scaffold_14	starts_in_intron	8007490	8007490	+	asmbl_12168,asmbl_12169	none	Trinity_GG_9476_c0_g1_i3,Trinity_GG_9476_c0_g1_i4,blat.proc3829879.chain_1948,blat.proc3829879.chain_1951	4	STRG.17203.2,STRG.17203.3,blat.proc3829879.chain_1947	3
scaffold_26	alt_acceptor	5489760	5489761	+	asmbl_35529	none	blat.proc3829885.chain_1190	1	STRG.28241.4	1
scaffold_2	ends_in_intron	5723450	5723450	+	asmbl_24463	none	blat.proc3829871.chain_1945	1	STRG.1973.1	1
scaffold_20	retained_intron	10114940	10115029	-	asmbl_27006	none	STRG.23549.1,blat.proc3829899.chain_564,blat.proc3829899.chain_565	3	STRG.23549.2,STRG.23549.3	2
scaffold_21	starts_in_intron	8540249	8540249	-	asmbl_27951	none	blat.proc3829899.chain_1399	1	STRG.24364.2,STRG.24364.3,blat.proc3829899.chain_1396,blat.proc3829899.chain_1397,blat.proc3829899.chain_1398	5
scaffold_26	alt_acceptor	9607196	9607197	+	asmbl_35765,asmbl_35770	none	STRG.28493.1,STRG.28493.2,Trinity_GG_15716_c0_g1_i2,blat.proc3829885.chain_1427	4	STRG.28493.3,Trinity_GG_15716_c0_g1_i6,blat.proc3829885.chain_1426	3
scaffold_26	retained_intron	3563037	3563144	+	asmbl_35324,asmbl_35325	none	STRG.28018.5,Trinity_GG_15467_c0_g1_i5,blat.proc3829885.chain_1002,blat.proc3829885.chain_1004	4	STRG.28018.1,STRG.28018.2,blat.proc3829885.chain_1001,blat.proc3829885.chain_1005	4
scaffold_6	spliced_intron	15944850	15945070	+	asmbl_47621	none	STRG.8316.2	1	STRG.8316.1	1
scaffold_23	ends_in_intron	10201354	10201354	-	asmbl_31848	none	Trinity_GG_31625_c1_g1_i1,blat.proc3829899.chain_3231	2	STRG.26215.1,STRG.26215.2,STRG.26215.3,blat.proc3829899.chain_3229	4
scaffold_23	retained_intron	4315627	4315866	+	asmbl_30798,asmbl_30799	none	blat.proc3829883.chain_2710,blat.proc3829883.chain_2718	2	STRG.25826.1,blat.proc3829883.chain_2716	2
scaffold_14	starts_in_intron	7451892	7451892	-	asmbl_13189,asmbl_13190	none	STRG.17171.3,STRG.17171.4,Trinity_GG_26570_c1_g1_i1,blat.proc3829895.chain_1737	4	STRG.17171.1,STRG.17171.2,blat.proc3829895.chain_1735,blat.proc3829895.chain_1736	4
scaffold_2	alt_donor	19372686	19372687	-	asmbl_23882,asmbl_23884	none	STRG.2804.1,STRG.2804.3,blat.proc3829887.chain_2630,blat.proc3829887.chain_2631	4	STRG.2804.2,blat.proc3829887.chain_2632	2
scaffold_4	ends_in_intron	8411838	8411838	+	asmbl_42893	none	Trinity_GG_2582_c0_g1_i4,blat.proc3829873.chain_1019	2	STRG.4670.1,STRG.4670.2,Trinity_GG_2582_c0_g1_i1,blat.proc3829873.chain_1018	4
scaffold_3	alt_donor	19886382	19886383	-	asmbl_39616,asmbl_39619	none	STRG.4100.1,STRG.4100.4,Trinity_GG_19264_c1_g1_i1,blat.proc3829889.chain_141	4	blat.proc3829889.chain_144	1
scaffold_5	alt_donor	10541432	10541433	+	asmbl_44348	none	STRG.6333.2,Trinity_GG_3455_c0_g1_i2,blat.proc3829873.chain_2481	3	STRG.6333.1	1
scaffold_13	spliced_intron	16138003	16138117	+	asmbl_11533	none	STRG.16640.2	1	STRG.16640.3,Trinity_GG_9180_c0_g1_i1	2
scaffold_9	retained_intron	11795862	11796216	-	asmbl_55267,asmbl_55272	none	STRG.11484.4,blat.proc3829891.chain_3594	2	STRG.11484.3,STRG.11484.5,blat.proc3829891.chain_3592	3
scaffold_18	alt_donor	4633019	4633020	-	asmbl_19852	none	STRG.21240.1,blat.proc3829897.chain_2050	2	blat.proc3829897.chain_2051	1
scaffold_4	starts_in_intron	4551354	4551354	+	asmbl_42618	none	Trinity_GG_2422_c2_g1_i1,blat.proc3829873.chain_740	2	STRG.4367.1,STRG.4367.2,STRG.4367.3,blat.proc3829873.chain_736,blat.proc3829873.chain_737,blat.proc3829873.chain_738	6
scaffold_15	starts_in_intron	10766414	10766414	+	asmbl_14406,asmbl_14411	none	STRG.18552.5,blat.proc3829879.chain_3162,blat.proc3829879.chain_3163	3	STRG.18552.3,blat.proc3829879.chain_3157,blat.proc3829879.chain_3159,blat.proc3829879.chain_3160,blat.proc3829879.chain_3161	5
scaffold_9	spliced_intron	16664696	16664923	-	asmbl_55571	none	STRG.11800.2,blat.proc3829893.chain_192	2	blat.proc3829893.chain_190	1
scaffold_3	skipped_exon	10276182	10277684	+	asmbl_40205,asmbl_40209	none	STRG.3461.2,STRG.3461.4,blat.proc3829871.chain_3625	3	STRG.3461.1,blat.proc3829871.chain_3621,blat.proc3829871.chain_3623	3
scaffold_16	alt_acceptor	8650378	8650379	+	asmbl_17233,asmbl_17234	none	STRG.19480.1,STRG.19480.2,blat.proc3829881.chain_375,blat.proc3829881.chain_376	4	STRG.19480.3,blat.proc3829881.chain_374	2
scaffold_2	alt_donor	20127839	20127840	-	asmbl_23898	none	blat.proc3829871.chain_2940	1	STRG.2837.1	1
scaffold_8	alt_acceptor	18460455	18460456	-	asmbl_53558	none	STRG.10740.2	1	STRG.10740.1,blat.proc3829891.chain_2876,blat.proc3829891.chain_2877	3
scaffold_12	alt_acceptor	4756832	4756833	-	asmbl_7573,asmbl_7575	none	STRG.14641.1,STRG.14641.3,blat.proc3829893.chain_2976	3	STRG.14641.2,STRG.14641.4,blat.proc3829893.chain_2975	3
scaffold_17	ends_in_intron	9856645	9856645	-	asmbl_19256	none	STRG.20595.4,Trinity_GG_28533_c1_g1_i1,blat.proc3829897.chain_1451	3	STRG.20595.1,STRG.20595.2,Trinity_GG_28533_c0_g1_i2,blat.proc3829897.chain_1449	4
scaffold_5	spliced_intron	14731563	14731696	-	asmbl_45994	none	STRG.6667.1,blat.proc3829889.chain_2713	2	blat.proc3829889.chain_2716	1
scaffold_19	retained_exon	6407888	6408830	-	asmbl_21424	none	STRG.22157.3,blat.proc3829897.chain_2844	2	STRG.22157.1,blat.proc3829897.chain_2843	2
scaffold_15	spliced_intron	7840903	7841007	+	asmbl_14249,asmbl_14251	none	STRG.18352.1,blat.proc3829879.chain_3000,blat.proc3829879.chain_3001	3	blat.proc3829879.chain_2999	1
scaffold_2	retained_intron	16357636	16357728	+	asmbl_25152	none	STRG.2573.4,blat.proc3829871.chain_2759	2	STRG.2573.1,Trinity_GG_1455_c0_g1_i3,blat.proc3829871.chain_2758,blat.proc3829871.chain_2761	4
scaffold_12	ends_in_intron	2920939	2920939	-	asmbl_7467	none	STRG.14515.5	1	STRG.14515.1,blat.proc3829893.chain_2935,blat.proc3829893.chain_2936	3
scaffold_2	alt_donor	6517413	6517414	+	asmbl_24500	none	STRG.2022.4	1	STRG.2022.1,STRG.2022.2,STRG.2022.3,Trinity_GG_1139_c0_g1_i2	4
scaffold_16	retained_exon	206369	206450	+	asmbl_16793	none	Trinity_GG_10416_c0_g1_i1,blat.proc3829879.chain_3611	2	STRG.18998.1,Trinity_GG_10416_c0_g1_i2,Trinity_GG_10416_c0_g1_i3,blat.proc3829879.chain_3610,blat.proc3829879.chain_3612	5
scaffold_26	starts_in_intron	8586727	8586727	-	asmbl_35005	none	blat.proc3829901.chain_1499,blat.proc3829901.chain_1502	2	STRG.28429.1,STRG.28429.2,blat.proc3829901.chain_1498,blat.proc3829901.chain_1500	4
scaffold_4	starts_in_intron	6705245	6705245	+	asmbl_42755	none	blat.proc3829873.chain_877	1	STRG.4530.1,STRG.4530.2,blat.proc3829873.chain_876	3
scaffold_2	alt_donor	19373630	19373631	-	asmbl_23882,asmbl_23883	none	STRG.2804.2,STRG.2804.3,blat.proc3829887.chain_2631,blat.proc3829887.chain_2632	4	STRG.2804.1,blat.proc3829887.chain_2630	2
scaffold_18	skipped_exon	7169403	7169698	+	asmbl_20742	none	Trinity_GG_11806_c0_g1_i4,blat.proc3829881.chain_2349	2	STRG.21401.1,Trinity_GG_11806_c0_g1_i3,blat.proc3829881.chain_2348	3
scaffold_11	starts_in_intron	335785	335785	+	asmbl_5247	none	Trinity_GG_7291_c0_g1_i1,blat.proc3829877.chain_1775	2	STRG.13256.1,STRG.13256.2,STRG.13256.3,blat.proc3829877.chain_1774,blat.proc3829877.chain_1776,blat.proc3829877.chain_1777	6
scaffold_25	alt_acceptor	690827	690828	+	asmbl_33343	none	STRG.27105.1	1	STRG.27105.2,blat.proc3829885.chain_145	2
scaffold_17	skipped_exon	3607	4095	+	asmbl_17657,asmbl_17659	none	STRG.19872.1,STRG.19872.3,Trinity_GG_10890_c0_g1_i2,blat.proc3829881.chain_724	4	STRG.19872.2,Trinity_GG_10890_c0_g1_i1,blat.proc3829881.chain_723	3
scaffold_12	skipped_exon	9797605	9799301	+	asmbl_8844	none	STRG.14935.2	1	STRG.14935.1,blat.proc3829877.chain_3422	2
scaffold_8	starts_in_intron	6121873	6121873	+	asmbl_51924	none	Trinity_GG_5582_c0_g1_i3,blat.proc3829875.chain_2526	2	STRG.10007.1,STRG.10007.2,STRG.10007.3,Trinity_GG_5582_c0_g1_i7,blat.proc3829875.chain_2524,blat.proc3829875.chain_2527	6
scaffold_15	starts_in_intron	3144959	3144959	-	asmbl_15086	none	blat.proc3829895.chain_2725	1	STRG.18084.1,blat.proc3829895.chain_2724	2
scaffold_23	starts_in_intron	10975902	10975902	+	asmbl_31188	none	Trinity_GG_14524_c0_g1_i10,blat.proc3829883.chain_3202	2	STRG.26281.1,STRG.26281.3,Trinity_GG_14524_c0_g1_i13,Trinity_GG_14524_c0_g1_i8,blat.proc3829883.chain_3193,blat.proc3829883.chain_3194,blat.proc3829883.chain_3195,blat.proc3829883.chain_3198,blat.proc3829883.chain_3199,blat.proc3829883.chain_3200,blat.proc3829883.chain_3203	11
scaffold_14	spliced_intron	5790911	5791036	-	asmbl_13074,asmbl_13077	none	STRG.17031.1,Trinity_GG_26569_c1_g2_i1,blat.proc3829895.chain_1731,blat.proc3829895.chain_1734	4	blat.proc3829895.chain_1733	1
scaffold_2	starts_in_intron	4018593	4018593	-	asmbl_23064	none	blat.proc3829887.chain_1708	1	STRG.1843.1,blat.proc3829887.chain_1706	2
scaffold_3	retained_intron	14559144	14559490	-	asmbl_39343	none	STRG.3794.1,Trinity_GG_19116_c0_g1_i2,blat.proc3829887.chain_3609	3	STRG.3794.2,Trinity_GG_19116_c0_g1_i1,blat.proc3829887.chain_3610	3
scaffold_28	retained_intron	7359508	7359739	+	asmbl_38363	none	Trinity_GG_16497_c0_g1_i6,blat.proc3829885.chain_2872	2	STRG.29785.1,blat.proc3829885.chain_2874	2
scaffold_2	retained_intron	16405690	16405769	-	asmbl_23700	none	blat.proc3829887.chain_2423	1	STRG.2581.1,blat.proc3829887.chain_2424	2
scaffold_2	alternate_exon	15873890	15873933	-	asmbl_23678	none	blat.proc3829887.chain_2390	1	blat.proc3829887.chain_2388	1
scaffold_18	spliced_intron	7867750	7867862	+	asmbl_20823,asmbl_20824,asmbl_20828,asmbl_20829	none	STRG.21477.1,STRG.21477.2,Trinity_GG_11877_c0_g1_i12,Trinity_GG_11877_c0_g1_i14,blat.proc3829881.chain_2469,blat.proc3829881.chain_2471,blat.proc3829881.chain_2474,blat.proc3829881.chain_2475	8	STRG.21477.4,Trinity_GG_11877_c0_g1_i6,blat.proc3829881.chain_2467,blat.proc3829881.chain_2473,blat.proc3829881.chain_2476	5
scaffold_15	alt_acceptor	11410341	11410342	-	asmbl_15518	none	STRG.18604.1,blat.proc3829895.chain_3392	2	STRG.18604.3,blat.proc3829895.chain_3393	2
scaffold_3	spliced_intron	13702911	13703499	+	asmbl_40407,asmbl_40409,asmbl_40410	none	STRG.3712.1,STRG.3712.2,STRG.3712.4,Trinity_GG_2088_c0_g1_i7,blat.proc3829873.chain_129,blat.proc3829873.chain_130,blat.proc3829873.chain_133	7	STRG.3712.3,blat.proc3829873.chain_132,blat.proc3829873.chain_134	3
scaffold_26	retained_exon	1994850	1994934	+	asmbl_35259	none	STRG.27926.2	1	STRG.27926.1	1
scaffold_22	alt_acceptor	10059286	10059287	+	asmbl_29632	none	STRG.25339.1,blat.proc3829883.chain_2336	2	STRG.25339.2	1
scaffold_22	retained_exon	744574	745101	-	asmbl_29892	none	STRG.24710.3,blat.proc3829899.chain_1766	2	STRG.24710.2	1
scaffold_2	alternate_exon	5903152	5904624	-	asmbl_23190	none	STRG.1974.2,blat.proc3829887.chain_1819	2	STRG.1974.1,Trinity_GG_18104_c0_g1_i2,blat.proc3829887.chain_1818	3
scaffold_4	alt_donor	10911868	10911869	-	asmbl_41610	none	STRG.4810.1,blat.proc3829889.chain_840	2	STRG.4810.2	1
scaffold_5	spliced_intron	14263100	14263469	+	asmbl_44583,asmbl_44586,asmbl_44590	none	STRG.6629.1,STRG.6629.3,blat.proc3829873.chain_2764,blat.proc3829873.chain_2769,blat.proc3829873.chain_2771	5	blat.proc3829873.chain_2765,blat.proc3829873.chain_2770	2
scaffold_9	alternate_exon	18390133	18391132	+	asmbl_54638,asmbl_54639	none	STRG.11879.1,STRG.11879.3	2	STRG.11879.2,blat.proc3829877.chain_596	2
scaffold_5	retained_intron	9711804	9711983	+	asmbl_44300	none	blat.proc3829873.chain_2438	1	STRG.6273.2,blat.proc3829873.chain_2439	2
scaffold_13	starts_in_intron	7195053	7195053	-	asmbl_9818	none	STRG.16001.2,Trinity_GG_26037_c1_g1_i1,blat.proc3829895.chain_846	3	STRG.16001.1,STRG.16001.3,STRG.16001.4,blat.proc3829895.chain_839,blat.proc3829895.chain_841,blat.proc3829895.chain_842,blat.proc3829895.chain_843	7
scaffold_21	spliced_intron	7914216	7914320	-	asmbl_27885	none	STRG.24311.3	1	STRG.24311.2,blat.proc3829899.chain_1284	2
scaffold_7	alternate_exon	4047399	4047530	-	asmbl_49663	none	STRG.8793.1	1	STRG.8793.2	1
scaffold_963	starts_in_intron	3603	3603	-	asmbl_55816	none	Trinity_GG_34122_c0_g1_i1	1	STRG.30491.1	1
scaffold_1	alternate_exon	12109034	12109217	+	asmbl_2159	none	STRG.824.2,blat.proc3829871.chain_847	2	STRG.824.1,blat.proc3829871.chain_849	2
scaffold_17	alternate_exon	11038782	11039046	-	asmbl_19309	none	STRG.20653.3,blat.proc3829897.chain_1562	2	STRG.20653.5,STRG.20653.7,Trinity_GG_28603_c1_g1_i1,blat.proc3829897.chain_1558,blat.proc3829897.chain_1559,blat.proc3829897.chain_1563	6
scaffold_1	ends_in_intron	7802891	7802891	-	asmbl_450	none	Trinity_GG_17299_c0_g1_i1,blat.proc3829887.chain_417	2	STRG.539.1,blat.proc3829887.chain_416,blat.proc3829887.chain_418	3
scaffold_3	retained_exon	6188092	6189526	-	asmbl_38865	none	blat.proc3829887.chain_3012	1	STRG.3262.1,blat.proc3829887.chain_3015	2
scaffold_27	alternate_exon	5062294	5062581	-	asmbl_36942,asmbl_36943	none	STRG.28916.1,STRG.28916.2	2	Trinity_GG_33207_c0_g1_i1,Trinity_GG_33207_c0_g1_i3,blat.proc3829901.chain_2088,blat.proc3829901.chain_2089	4
scaffold_5	alt_donor	12237961	12237962	+	asmbl_44457	none	STRG.6452.1,blat.proc3829873.chain_2560	2	STRG.6452.3,blat.proc3829873.chain_2561	2
scaffold_13	spliced_intron	7085246	7085351	-	asmbl_9809	none	STRG.16000.2	1	blat.proc3829895.chain_773	1
scaffold_3	alt_acceptor	16186884	16186885	+	asmbl_40573	none	STRG.3896.2	1	STRG.3896.1,blat.proc3829873.chain_263	2
scaffold_5	alternate_exon	15042733	15043047	-	asmbl_46015,asmbl_46018,asmbl_46019	none	STRG.6692.4,STRG.6692.5,STRG.6692.7,blat.proc3829889.chain_2738,blat.proc3829889.chain_2742	5	STRG.6692.2,STRG.6692.3,blat.proc3829889.chain_2739,blat.proc3829889.chain_2741	4
scaffold_13	retained_intron	530723	531277	-	asmbl_9320	none	STRG.15435.1,Trinity_GG_25671_c0_g1_i1,blat.proc3829895.chain_182	3	STRG.15435.2	1
scaffold_12	alternate_exon	2660558	2660646	+	asmbl_8471	none	blat.proc3829877.chain_2968	1	STRG.14495.1,STRG.14495.3,blat.proc3829877.chain_2969,blat.proc3829877.chain_2970,blat.proc3829877.chain_2972	5
scaffold_6	ends_in_intron	14593576	14593576	+	asmbl_47567	none	STRG.8213.2,blat.proc3829875.chain_641	2	STRG.8213.1,STRG.8213.3,blat.proc3829875.chain_640	3
scaffold_12	ends_in_intron	5641117	5641117	-	asmbl_7650	none	Trinity_GG_25225_c0_g1_i2,blat.proc3829893.chain_3120	2	STRG.14706.1,blat.proc3829893.chain_3121	2
scaffold_27	starts_in_intron	3541927	3541927	+	asmbl_36171	none	blat.proc3829885.chain_1897	1	STRG.28804.1	1
scaffold_25	retained_intron	5635227	5635475	+	asmbl_33570	none	Trinity_GG_15129_c0_g1_i1,blat.proc3829885.chain_485	2	STRG.27444.1,Trinity_GG_15129_c0_g1_i2,blat.proc3829885.chain_486	3
scaffold_18	retained_intron	1886374	1887352	-	asmbl_19688,asmbl_19691,asmbl_19692,asmbl_19693	none	STRG.21072.5	1	STRG.21072.1,blat.proc3829897.chain_1890,blat.proc3829897.chain_1895,blat.proc3829897.chain_1897	4
scaffold_5	alternate_exon	4773762	4773944	-	asmbl_45398	none	STRG.5933.1	1	STRG.5933.2,blat.proc3829889.chain_2043	2
scaffold_19	retained_intron	7588347	7588430	-	asmbl_21455	none	blat.proc3829897.chain_2932	1	STRG.22232.1,STRG.22232.2,blat.proc3829897.chain_2931	3
scaffold_2	alternate_exon	18917442	18917622	-	asmbl_23849,asmbl_23850,asmbl_23851	none	STRG.2765.1,STRG.2765.2,Trinity_GG_18545_c0_g1_i1,Trinity_GG_18545_c0_g1_i3,Trinity_GG_18545_c0_g1_i4,blat.proc3829887.chain_2597,blat.proc3829887.chain_2598,blat.proc3829887.chain_2600	8	Trinity_GG_18545_c0_g1_i2,blat.proc3829887.chain_2599	2
scaffold_28	starts_in_intron	8319031	8319031	-	asmbl_37784	none	blat.proc3829901.chain_2987	1	STRG.29893.1,blat.proc3829901.chain_2988	2
scaffold_27	alt_acceptor	3912135	3912136	-	asmbl_36885	none	STRG.28831.1,blat.proc3829901.chain_2025	2	STRG.28831.2	1
scaffold_12	alt_acceptor	11324729	11324730	+	asmbl_8925,asmbl_8926	none	STRG.15051.1,STRG.15051.2,Trinity_GG_8310_c0_g1_i1,Trinity_GG_8310_c0_g1_i2,blat.proc3829877.chain_3549,blat.proc3829877.chain_3550	6	STRG.15051.3	1
scaffold_24	starts_in_intron	1953821	1953821	-	asmbl_32750	none	blat.proc3829899.chain_3469	1	STRG.26404.1,blat.proc3829899.chain_3468	2
scaffold_28	retained_intron	7528910	7529100	+	asmbl_38385	none	blat.proc3829885.chain_2866	1	STRG.29810.1,blat.proc3829885.chain_2865,blat.proc3829885.chain_2867	3
scaffold_11	alt_donor	8096919	8096920	+	asmbl_5687	none	STRG.13810.2,Trinity_GG_7614_c0_g1_i1,blat.proc3829877.chain_2294	3	STRG.13810.1,Trinity_GG_7614_c0_g1_i3,blat.proc3829877.chain_2296	3
scaffold_7	alt_donor	2589217	2589218	+	asmbl_50536	none	blat.proc3829875.chain_1113	1	STRG.8685.2	1
scaffold_21	starts_in_intron	557183	557183	-	asmbl_27362	none	Trinity_GG_30233_c0_g1_i2,blat.proc3829899.chain_796	2	STRG.23735.1,Trinity_GG_30233_c0_g1_i1,blat.proc3829899.chain_795	3
scaffold_11	ends_in_intron	17382443	17382443	-	asmbl_7247	none	blat.proc3829893.chain_2761	1	STRG.14391.1,STRG.14391.2,blat.proc3829893.chain_2760	3
scaffold_4	spliced_intron	4498633	4498751	-	asmbl_41256,asmbl_41258	none	STRG.4352.1,STRG.4352.2,Trinity_GG_19457_c0_g1_i2,blat.proc3829889.chain_479	4	Trinity_GG_19457_c0_g1_i3,blat.proc3829889.chain_478	2
scaffold_1	ends_in_intron	1799011	1799011	+	asmbl_1507	none	Trinity_GG_44_c0_g1_i2,blat.proc3829871.chain_83	2	STRG.120.1,Trinity_GG_44_c0_g1_i1,blat.proc3829871.chain_82	3
scaffold_21	starts_in_intron	11371581	11371581	-	asmbl_28152	none	blat.proc3829899.chain_1720	1	blat.proc3829899.chain_1719,blat.proc3829899.chain_1721	2
scaffold_24	retained_intron	7175760	7176154	-	asmbl_33004	none	STRG.26749.1	1	STRG.26749.2	1
scaffold_3	retained_exon	13176884	13176898	+	asmbl_40392	none	blat.proc3829873.chain_79	1	STRG.3679.1,blat.proc3829873.chain_76,blat.proc3829873.chain_77,blat.proc3829873.chain_78,blat.proc3829873.chain_80	5
scaffold_17	alt_acceptor	748757	748758	+	asmbl_17694	none	STRG.19905.2	1	STRG.19905.1	1
scaffold_17	retained_exon	9570412	9570707	+	asmbl_18244	none	STRG.20567.2,blat.proc3829881.chain_1332	2	STRG.20567.1,blat.proc3829881.chain_1334	2
scaffold_9	alternate_exon	6744026	6745194	-	asmbl_55033	none	STRG.11176.3,blat.proc3829891.chain_3306	2	STRG.11176.1,STRG.11176.2,blat.proc3829891.chain_3303,blat.proc3829891.chain_3304	4
scaffold_27	ends_in_intron	6609853	6609853	-	asmbl_37025	none	blat.proc3829901.chain_2171	1	STRG.29008.1,STRG.29008.2,blat.proc3829901.chain_2172	3
scaffold_17	alt_acceptor	2561585	2561586	-	asmbl_18811	none	STRG.20038.2	1	STRG.20038.1	1
scaffold_1	retained_intron	4225778	4226020	+	asmbl_1640	none	blat.proc3829871.chain_307	1	STRG.249.1,blat.proc3829871.chain_306	2
scaffold_5	alt_acceptor	18178817	18178818	+	asmbl_44869	none	STRG.6948.1	1	STRG.6948.2,STRG.6948.3,Trinity_GG_3801_c1_g1_i4,blat.proc3829873.chain_3058,blat.proc3829873.chain_3060	5
scaffold_20	spliced_intron	11538861	11538952	-	asmbl_27075	none	STRG.23648.1,Trinity_GG_30174_c0_g1_i1,blat.proc3829899.chain_635	3	Trinity_GG_30174_c0_g1_i2,blat.proc3829899.chain_636	2
scaffold_11	alternate_exon	3138393	3141619	-	asmbl_6507	none	STRG.13434.1,blat.proc3829893.chain_1872	2	blat.proc3829893.chain_1873	1
scaffold_19	alternate_exon	7704905	7706165	+	asmbl_22296,asmbl_22297	none	blat.proc3829881.chain_3150,blat.proc3829881.chain_3151	2	STRG.22243.2,blat.proc3829881.chain_3149	2
scaffold_17	alt_acceptor	14037349	14037350	-	asmbl_19448	none	STRG.20870.1	1	STRG.20870.3	1
scaffold_13	spliced_intron	6949076	6950695	-	asmbl_9777	none	STRG.15968.5	1	STRG.15968.1,STRG.15968.6,Trinity_GG_25972_c0_g1_i5	3
scaffold_7	starts_in_intron	8562051	8562051	-	asmbl_49827	none	STRG.9077.1,blat.proc3829891.chain_1365	2	STRG.9077.2	1
scaffold_12	alternate_exon	2927115	2928560	-	asmbl_7468	none	STRG.14515.6	1	STRG.14515.1	1
scaffold_11	starts_in_intron	10320682	10320682	+	asmbl_5901	none	STRG.14028.2	1	STRG.14028.1,blat.proc3829877.chain_2516,blat.proc3829877.chain_2517	3
scaffold_13	retained_exon	15637557	15637697	+	asmbl_11501	none	STRG.16594.2	1	STRG.16594.3	1
scaffold_15	spliced_intron	8365621	8365937	-	asmbl_15358	none	STRG.18387.2,blat.proc3829895.chain_3159	2	blat.proc3829895.chain_3158	1
scaffold_25	retained_intron	9291594	9291672	+	asmbl_33794	none	Trinity_GG_15281_c0_g1_i3,blat.proc3829885.chain_714	2	STRG.27727.1,blat.proc3829885.chain_715	2
scaffold_10	ends_in_intron	13473034	13473034	-	asmbl_3791	none	Trinity_GG_24242_c1_g1_i1,blat.proc3829893.chain_1420	2	STRG.12931.3	1
scaffold_10	skipped_exon	3065795	3066072	-	asmbl_3069	none	STRG.12119.1,Trinity_GG_23763_c0_g1_i2,blat.proc3829893.chain_569	3	STRG.12119.3	1
scaffold_321	alt_acceptor	2207	2208	-	asmbl_40907	none	STRG.30251.1,Trinity_GG_33977_c0_g1_i3,blat.proc3829901.chain_3321	3	Trinity_GG_33977_c0_g1_i2,blat.proc3829901.chain_3322	2
scaffold_24	alt_donor	10089307	10089308	+	asmbl_32540	none	STRG.26956.2	1	blat.proc3829901.chain_242	1
scaffold_15	ends_in_intron	5659290	5659290	+	asmbl_14160	none	blat.proc3829879.chain_2877	1	STRG.18245.1,blat.proc3829879.chain_2876	2
scaffold_20	starts_in_intron	9533001	9533001	+	asmbl_26017	none	Trinity_GG_12973_c0_g1_i3,blat.proc3829883.chain_577	2	STRG.23480.1,STRG.23480.2,blat.proc3829883.chain_576,blat.proc3829883.chain_580	4
scaffold_19	skipped_exon	13211934	13213021	-	asmbl_21839	none	blat.proc3829897.chain_3361	1	STRG.22682.1,blat.proc3829897.chain_3360,blat.proc3829897.chain_3362,blat.proc3829897.chain_3363,blat.proc3829897.chain_3364,blat.proc3829897.chain_3368,blat.proc3829897.chain_3370	7
scaffold_12	ends_in_intron	1986673	1986673	-	asmbl_7453,asmbl_7454	none	blat.proc3829893.chain_2863,blat.proc3829893.chain_2864	2	STRG.14473.1,blat.proc3829893.chain_2862,blat.proc3829893.chain_2865	3
scaffold_13	skipped_exon	5812558	5814216	+	asmbl_10881,asmbl_10882	none	STRG.15880.3,STRG.15880.4	2	STRG.15880.1	1
scaffold_12	starts_in_intron	15096401	15096401	-	asmbl_8179	none	STRG.15303.1,blat.proc3829893.chain_3694	2	STRG.15303.2,Trinity_GG_25549_c1_g1_i5,blat.proc3829893.chain_3693	3
scaffold_10	alternate_exon	16258044	16258562	+	asmbl_4985	none	STRG.13097.4	1	STRG.13097.2,Trinity_GG_7185_c0_g1_i2,blat.proc3829877.chain_1597,blat.proc3829877.chain_1598	4
scaffold_13	starts_in_intron	11791562	11791562	-	asmbl_10068	none	blat.proc3829895.chain_1054	1	STRG.16306.1,blat.proc3829895.chain_1052,blat.proc3829895.chain_1053	3
scaffold_16	alt_acceptor	4137289	4137290	-	asmbl_16225,asmbl_16226	none	blat.proc3829897.chain_298,blat.proc3829897.chain_299	2	STRG.19217.2	1
scaffold_11	starts_in_intron	8102877	8102877	+	asmbl_5695	none	Trinity_GG_7614_c1_g1_i5,blat.proc3829877.chain_2302	2	STRG.13811.1,STRG.13811.2,STRG.13811.3,blat.proc3829877.chain_2300,blat.proc3829877.chain_2301,blat.proc3829877.chain_2303	6
scaffold_7	retained_exon	4071926	4072018	-	asmbl_49664	none	STRG.8797.2,blat.proc3829891.chain_1109	2	STRG.8797.1	1
scaffold_8	alternate_exon	14431683	14435229	+	asmbl_52360,asmbl_52363	none	STRG.10524.1,blat.proc3829875.chain_3041,blat.proc3829875.chain_3042	3	STRG.10524.2	1
scaffold_7	starts_in_intron	13552127	13552127	-	asmbl_50129	none	blat.proc3829891.chain_1632	1	STRG.9466.1,blat.proc3829891.chain_1630,blat.proc3829891.chain_1631	3
scaffold_3	retained_exon	8999420	8999513	-	asmbl_39006,asmbl_39007	none	STRG.3425.1,STRG.3425.2	2	blat.proc3829887.chain_3227,blat.proc3829887.chain_3230,blat.proc3829887.chain_3231	3
scaffold_2	spliced_intron	14219858	14219944	-	asmbl_23595,asmbl_23597,asmbl_23598	none	STRG.2413.1,blat.proc3829887.chain_2199,blat.proc3829887.chain_2201,blat.proc3829887.chain_2202	4	blat.proc3829887.chain_2203	1
scaffold_11	spliced_intron	13092586	13092869	+	asmbl_6005,asmbl_6008	none	STRG.14176.2,STRG.14176.4	2	Trinity_GG_7823_c0_g1_i13,blat.proc3829877.chain_2668	2
scaffold_13	alt_acceptor	3913614	3913615	+	asmbl_10730	none	STRG.15703.2	1	STRG.15703.1,blat.proc3829879.chain_422	2
scaffold_20	alt_acceptor	7471394	7471395	-	asmbl_26832	none	blat.proc3829899.chain_393	1	STRG.23308.1,blat.proc3829899.chain_389,blat.proc3829899.chain_391,blat.proc3829899.chain_394,blat.proc3829899.chain_395,blat.proc3829899.chain_396,blat.proc3829899.chain_399,blat.proc3829899.chain_401	8
scaffold_4	retained_intron	6300650	6300748	+	asmbl_42723,asmbl_42724,asmbl_42725	none	blat.proc3829873.chain_865,blat.proc3829873.chain_867,blat.proc3829873.chain_871	3	STRG.4502.1,Trinity_GG_2497_c0_g1_i1,Trinity_GG_2497_c0_g1_i6,Trinity_GG_2497_c0_g1_i8,Trinity_GG_2497_c0_g1_i9,blat.proc3829873.chain_863,blat.proc3829873.chain_866,blat.proc3829873.chain_868,blat.proc3829873.chain_870	9
scaffold_7	alt_acceptor	18351035	18351036	-	asmbl_50279,asmbl_50280	none	STRG.9657.1,STRG.9657.3,blat.proc3829891.chain_1919,blat.proc3829891.chain_1920	4	STRG.9657.2	1
scaffold_3	retained_intron	10849045	10849122	+	asmbl_40258	none	STRG.3517.2,Trinity_GG_1981_c0_g1_i1,blat.proc3829871.chain_3677	3	STRG.3517.1,Trinity_GG_1981_c0_g1_i2,blat.proc3829871.chain_3676	3
scaffold_6	alt_donor	12629495	12629496	-	asmbl_48770,asmbl_48771	none	STRG.8013.2,Trinity_GG_21546_c0_g1_i1,blat.proc3829891.chain_254,blat.proc3829891.chain_257	4	STRG.8013.1,Trinity_GG_21546_c0_g1_i2,blat.proc3829891.chain_253,blat.proc3829891.chain_256	4
scaffold_17	spliced_intron	12187281	12187379	+	asmbl_18397	none	STRG.20742.3,blat.proc3829881.chain_1596	2	STRG.20742.2,blat.proc3829881.chain_1598	2
scaffold_6	alt_donor	600520	600521	-	asmbl_47991,asmbl_47992,asmbl_47995	none	STRG.7116.1,STRG.7116.4,STRG.7116.5,blat.proc3829889.chain_3098,blat.proc3829889.chain_3099	5	STRG.7116.2,STRG.7116.3	2
scaffold_8	alt_acceptor	15692383	15692384	+	asmbl_52405	none	STRG.10563.1,Trinity_GG_5874_c0_g1_i2,blat.proc3829875.chain_3063	3	STRG.10563.2	1
scaffold_6	alternate_exon	15470719	15470844	-	asmbl_49009	none	STRG.8290.2,blat.proc3829891.chain_581	2	STRG.8290.1,blat.proc3829891.chain_580	2
scaffold_6	alternate_exon	10914476	10915636	+	asmbl_47246	none	STRG.7900.3,Trinity_GG_4305_c0_g1_i1,blat.proc3829875.chain_230	3	STRG.7900.4,Trinity_GG_4305_c0_g1_i6,blat.proc3829875.chain_227,blat.proc3829875.chain_228	4
scaffold_2	alt_acceptor	7119254	7119255	+	asmbl_24557	none	STRG.2045.1,Trinity_GG_1155_c0_g1_i1,blat.proc3829871.chain_2116	3	STRG.2045.2,STRG.2045.3,Trinity_GG_1155_c0_g1_i2,blat.proc3829871.chain_2117	4
scaffold_17	spliced_intron	7038519	7038718	-	asmbl_19064	none	STRG.20356.1,blat.proc3829897.chain_1266	2	blat.proc3829897.chain_1267	1
scaffold_3	starts_in_intron	17364015	17364015	-	asmbl_39493,asmbl_39499	none	STRG.3972.2,blat.proc3829889.chain_28	2	STRG.3972.1,STRG.3972.3,STRG.3972.4,blat.proc3829889.chain_22,blat.proc3829889.chain_23,blat.proc3829889.chain_24,blat.proc3829889.chain_25,blat.proc3829889.chain_27,blat.proc3829889.chain_29,blat.proc3829889.chain_30,blat.proc3829889.chain_31	11
scaffold_23	spliced_intron	6290510	6290714	-	asmbl_31687,asmbl_31692,asmbl_31693	none	STRG.25954.1,Trinity_GG_31552_c0_g1_i2,Trinity_GG_31552_c0_g1_i5,blat.proc3829899.chain_3101,blat.proc3829899.chain_3104,blat.proc3829899.chain_3107	6	STRG.25954.2,Trinity_GG_31552_c0_g1_i3,Trinity_GG_31552_c0_g1_i4,Trinity_GG_31552_c0_g1_i6,Trinity_GG_31552_c0_g1_i7,blat.proc3829899.chain_3102,blat.proc3829899.chain_3103,blat.proc3829899.chain_3105,blat.proc3829899.chain_3106	9
scaffold_8	starts_in_intron	11269824	11269824	-	asmbl_53140	none	Trinity_GG_22769_c0_g1_i1	1	STRG.10329.1,STRG.10329.2,STRG.10329.3,blat.proc3829891.chain_2491,blat.proc3829891.chain_2492	5
scaffold_24	retained_intron	10597325	10597404	-	asmbl_33205	none	blat.proc3829901.chain_312	1	STRG.26998.1,blat.proc3829901.chain_314	2
scaffold_16	spliced_intron	8294415	8294498	+	asmbl_17185	none	STRG.19456.2,blat.proc3829881.chain_327	2	STRG.19456.1,blat.proc3829881.chain_326	2
scaffold_15	ends_in_intron	2444098	2444098	-	asmbl_15017	none	Trinity_GG_27121_c0_g2_i1	1	STRG.18012.1	1
scaffold_18	spliced_intron	2758917	2759003	-	asmbl_19774,asmbl_19775	none	STRG.21125.1,STRG.21125.2,blat.proc3829897.chain_2033,blat.proc3829897.chain_2035	4	Trinity_GG_28855_c0_g1_i1,blat.proc3829897.chain_2032,blat.proc3829897.chain_2034	3
scaffold_24	alt_acceptor	4327750	4327751	+	asmbl_32204	none	STRG.26581.2	1	STRG.26581.1	1
scaffold_14	retained_intron	1715156	1715260	-	asmbl_12891	none	Trinity_GG_26421_c0_g1_i1,blat.proc3829895.chain_1502	2	STRG.16794.1,Trinity_GG_26421_c0_g1_i3,blat.proc3829895.chain_1503	3
scaffold_6	retained_intron	4319469	4319899	+	asmbl_46821,asmbl_46823,asmbl_46826	none	STRG.7402.1,Trinity_GG_4053_c2_g1_i2,blat.proc3829873.chain_3511,blat.proc3829873.chain_3513,blat.proc3829873.chain_3514	5	STRG.7402.2,blat.proc3829873.chain_3510	2
scaffold_13	alt_acceptor	15512101	15512102	+	asmbl_11490,asmbl_11491	none	STRG.16580.1,blat.proc3829879.chain_1334,blat.proc3829879.chain_1335	3	STRG.16580.4	1
scaffold_17	alt_donor	10038926	10038927	-	asmbl_19275,asmbl_19277	none	STRG.20608.1,STRG.20608.6	2	STRG.20608.2	1
scaffold_11	starts_in_intron	8073696	8073696	-	asmbl_6813	none	Trinity_GG_24711_c0_g1_i1,blat.proc3829893.chain_2207	2	STRG.13802.1,STRG.13802.2,Trinity_GG_24711_c0_g1_i17,Trinity_GG_24711_c0_g1_i18,Trinity_GG_24711_c0_g1_i3,Trinity_GG_24711_c0_g1_i5,Trinity_GG_24711_c0_g1_i8,blat.proc3829893.chain_2197,blat.proc3829893.chain_2198,blat.proc3829893.chain_2201,blat.proc3829893.chain_2204,blat.proc3829893.chain_2205,blat.proc3829893.chain_2206,blat.proc3829893.chain_2209,blat.proc3829893.chain_2211	15
scaffold_12	retained_intron	14173452	14174310	+	asmbl_9030,asmbl_9031,asmbl_9032	none	STRG.15236.1,STRG.15236.2,STRG.15236.3,Trinity_GG_8405_c0_g1_i9,blat.proc3829877.chain_3705,blat.proc3829877.chain_3706,blat.proc3829877.chain_3708	7	blat.proc3829877.chain_3704	1
scaffold_19	ends_in_intron	12355502	12355502	+	asmbl_22599	none	Trinity_GG_12479_c0_g1_i2,blat.proc3829881.chain_3512	2	STRG.22554.1,STRG.22554.2,Trinity_GG_12479_c0_g1_i1,blat.proc3829881.chain_3513	4
scaffold_10	starts_in_intron	10570839	10570839	+	asmbl_4702	none	Trinity_GG_6972_c0_g1_i6	1	STRG.12742.1	1
scaffold_4	spliced_intron	16577833	16578010	+	asmbl_43311,asmbl_43314,asmbl_43315,asmbl_43316	none	STRG.5238.1,STRG.5238.2,STRG.5238.3,blat.proc3829873.chain_1499,blat.proc3829873.chain_1500	5	Trinity_GG_2896_c0_g1_i1,blat.proc3829873.chain_1498,blat.proc3829873.chain_1501	3
scaffold_6	spliced_intron	298817	299335	+	asmbl_46601,asmbl_46604	none	STRG.7082.2,Trinity_GG_3916_c0_g1_i8,blat.proc3829873.chain_3249	3	STRG.7082.3,Trinity_GG_3916_c0_g1_i3,blat.proc3829873.chain_3252	3
scaffold_24	skipped_exon	4319025	4319782	+	asmbl_32201	none	STRG.26578.3	1	STRG.26578.2	1
scaffold_2	retained_intron	16101801	16102006	-	asmbl_23689	none	Trinity_GG_18418_c0_g1_i3,blat.proc3829887.chain_2396	2	STRG.2549.1,blat.proc3829887.chain_2395	2
scaffold_4	alt_acceptor	9978169	9978170	+	asmbl_42966	none	STRG.4756.1	1	STRG.4756.2	1
scaffold_1	spliced_intron	14305743	14305929	+	asmbl_2354	none	STRG.1018.1,blat.proc3829871.chain_1134	2	blat.proc3829871.chain_1135	1
scaffold_4	alt_donor	3528470	3528471	-	asmbl_41191	none	STRG.4277.5	1	STRG.4277.3	1
scaffold_28	starts_in_intron	5586106	5586106	-	asmbl_37618	none	Trinity_GG_33652_c0_g1_i1,blat.proc3829901.chain_2803	2	STRG.29672.1,Trinity_GG_33652_c0_g1_i2,blat.proc3829901.chain_2802	3
scaffold_22	retained_exon	11476356	11476485	-	asmbl_30450	none	STRG.25475.1	1	STRG.25475.2	1
scaffold_20	alt_acceptor	2113685	2113686	+	asmbl_25629	none	STRG.22938.2	1	STRG.22938.1,blat.proc3829883.chain_79	2
scaffold_17	alt_acceptor	5138001	5138002	-	asmbl_18960	none	STRG.20232.1,blat.proc3829897.chain_1207	2	STRG.20232.2,STRG.20232.3,blat.proc3829897.chain_1206,blat.proc3829897.chain_1209	4
scaffold_17	starts_in_intron	13444988	13444988	-	asmbl_19415	none	blat.proc3829897.chain_1740	1	STRG.20809.1,blat.proc3829897.chain_1739	2
scaffold_12	alternate_exon	4753922	4754834	+	asmbl_8577	none	STRG.14640.1,Trinity_GG_8048_c2_g1_i1,blat.proc3829877.chain_3064,blat.proc3829877.chain_3066	4	STRG.14640.2,Trinity_GG_8048_c0_g1_i5,blat.proc3829877.chain_3063,blat.proc3829877.chain_3065	4
scaffold_19	retained_intron	12251512	12251604	+	asmbl_22577	none	Trinity_GG_12459_c0_g1_i2,blat.proc3829881.chain_3467	2	STRG.22543.1,STRG.22543.2,Trinity_GG_12459_c0_g1_i1,blat.proc3829881.chain_3466	4
scaffold_8	starts_in_intron	4888649	4888649	+	asmbl_51861,asmbl_51863	none	Trinity_GG_5499_c1_g1_i1,blat.proc3829875.chain_2369,blat.proc3829875.chain_2370	3	STRG.9952.1,blat.proc3829875.chain_2367	2
scaffold_13	alternate_exon	366022	367464	-	asmbl_9275,asmbl_9287,asmbl_9288	none	STRG.15426.1,STRG.15426.3,STRG.15426.5,Trinity_GG_25666_c0_g1_i11,blat.proc3829895.chain_155	5	STRG.15426.4,Trinity_GG_25666_c0_g1_i10,blat.proc3829895.chain_156	3
scaffold_28	retained_intron	2109125	2109263	+	asmbl_38018	none	blat.proc3829885.chain_2493	1	STRG.29353.1	1
scaffold_9	alternate_exon	4206880	4207808	+	asmbl_53924	none	STRG.11013.2,Trinity_GG_6093_c0_g1_i1,blat.proc3829875.chain_3426	3	STRG.11013.1,blat.proc3829875.chain_3430	2
scaffold_18	retained_exon	7172462	7172566	-	asmbl_19961,asmbl_19964	none	STRG.21405.1,STRG.21405.3,Trinity_GG_28995_c0_g1_i3,blat.proc3829897.chain_2259	4	STRG.21405.2,Trinity_GG_28995_c0_g1_i5,blat.proc3829897.chain_2258	3
scaffold_8	spliced_intron	18442849	18443312	-	asmbl_53554	none	STRG.10739.1,blat.proc3829891.chain_2937	2	blat.proc3829891.chain_2938	1
scaffold_24	skipped_exon	9592148	9592961	-	asmbl_33130	none	STRG.26924.3	1	STRG.26924.1,STRG.26924.2,blat.proc3829901.chain_225	3
scaffold_10	alt_acceptor	8464052	8464053	-	asmbl_3503	none	STRG.12592.1,blat.proc3829893.chain_1092	2	STRG.12592.2,blat.proc3829893.chain_1093	2
scaffold_1	alternate_exon	19006746	19007215	+	asmbl_2562	none	STRG.1322.4	1	STRG.1322.3	1
scaffold_13	ends_in_intron	3811402	3811402	-	asmbl_9546	none	Trinity_GG_25798_c0_g1_i4,blat.proc3829895.chain_411	2	STRG.15699.1,blat.proc3829895.chain_409,blat.proc3829895.chain_412	3
scaffold_16	starts_in_intron	9204853	9204853	-	asmbl_16451	none	blat.proc3829897.chain_490	1	STRG.19508.1,blat.proc3829897.chain_489	2
scaffold_6	alt_acceptor	11450	11451	-	asmbl_47955	none	blat.proc3829889.chain_3048	1	STRG.7049.1	1
scaffold_18	spliced_intron	1901421	1904370	-	asmbl_19688,asmbl_19694,asmbl_19699,asmbl_19700,asmbl_19701,asmbl_19706	none	STRG.21072.10,STRG.21072.2,STRG.21072.4,blat.proc3829897.chain_1892,blat.proc3829897.chain_1902	5	STRG.21072.3,Trinity_GG_28789_c0_g2_i1,Trinity_GG_28789_c3_g1_i1,blat.proc3829897.chain_1897,blat.proc3829897.chain_1900,blat.proc3829897.chain_1901,blat.proc3829897.chain_1904,blat.proc3829897.chain_1907	8
scaffold_10	alt_acceptor	7673370	7673371	+	asmbl_4575	none	STRG.12547.3	1	STRG.12547.4,Trinity_GG_6909_c0_g1_i1,blat.proc3829877.chain_1107	3
scaffold_7	retained_intron	12387853	12388141	-	asmbl_50017,asmbl_50021	none	blat.proc3829891.chain_1534,blat.proc3829891.chain_1537	2	STRG.9328.1,blat.proc3829891.chain_1531,blat.proc3829891.chain_1532,blat.proc3829891.chain_1533,blat.proc3829891.chain_1535,blat.proc3829891.chain_1536	6
scaffold_15	skipped_exon	3713137	3713705	-	asmbl_15125	none	STRG.18125.2	1	STRG.18125.1,blat.proc3829895.chain_2822	2
scaffold_2	retained_intron	888327	888347	+	asmbl_24146,asmbl_24147,asmbl_24148,asmbl_24149,asmbl_24150	none	STRG.1564.1,STRG.1564.2,STRG.1564.3,STRG.1564.5,Trinity_GG_856_c1_g1_i1,Trinity_GG_856_c1_g1_i3,blat.proc3829871.chain_1551,blat.proc3829871.chain_1552	8	STRG.1564.4	1
scaffold_9	starts_in_intron	8089145	8089145	-	asmbl_55086	none	blat.proc3829891.chain_3386	1	STRG.11228.1,blat.proc3829891.chain_3385	2
scaffold_2	retained_intron	16280381	16280649	+	asmbl_25131,asmbl_25134	none	blat.proc3829871.chain_2780,blat.proc3829871.chain_2784	2	STRG.2564.1,STRG.2564.3,Trinity_GG_1464_c0_g1_i8,blat.proc3829871.chain_2777,blat.proc3829871.chain_2778,blat.proc3829871.chain_2781,blat.proc3829871.chain_2782,blat.proc3829871.chain_2783,blat.proc3829871.chain_2785,blat.proc3829871.chain_2786	10
scaffold_18	retained_intron	4708153	4708225	+	asmbl_20579	none	Trinity_GG_11700_c0_g1_i1,blat.proc3829881.chain_2134	2	STRG.21253.1,blat.proc3829881.chain_2135	2
scaffold_21	ends_in_intron	6370105	6370105	+	asmbl_28648	none	Trinity_GG_13372_c0_g1_i1,blat.proc3829883.chain_1278	2	STRG.24145.1,Trinity_GG_13372_c0_g1_i2,blat.proc3829883.chain_1279	3
scaffold_27	skipped_exon	5797927	5799064	-	asmbl_36981	none	STRG.28963.1	1	STRG.28963.2	1
scaffold_27	retained_intron	7277981	7278212	+	asmbl_36401	none	STRG.29070.1,Trinity_GG_16046_c0_g1_i1,blat.proc3829885.chain_2123	3	STRG.29070.2	1
scaffold_14	alt_acceptor	7473929	7473930	-	asmbl_13197	none	STRG.17176.1	1	STRG.17176.2,STRG.17176.3,blat.proc3829895.chain_1878	3
scaffold_10	retained_exon	6705881	6705953	-	asmbl_3410	none	STRG.12492.1,blat.proc3829893.chain_977	2	blat.proc3829893.chain_979	1
scaffold_13	spliced_intron	8518420	8518604	+	asmbl_11120	none	STRG.16113.1,blat.proc3829879.chain_860	2	Trinity_GG_8862_c0_g1_i2,Trinity_GG_8862_c0_g1_i3,blat.proc3829879.chain_859	3
scaffold_6	retained_intron	13000458	13000538	-	asmbl_48795,asmbl_48796,asmbl_48802,asmbl_48803,asmbl_48805	none	Trinity_GG_21547_c0_g1_i10,Trinity_GG_21547_c0_g1_i16,Trinity_GG_21547_c0_g1_i18,blat.proc3829891.chain_259,blat.proc3829891.chain_263,blat.proc3829891.chain_265,blat.proc3829891.chain_268,blat.proc3829891.chain_272	8	STRG.8061.1,STRG.8061.2,STRG.8061.3,STRG.8061.4,STRG.8061.5,STRG.8061.6,STRG.8061.7,STRG.8061.8,Trinity_GG_21547_c0_g1_i11,Trinity_GG_21547_c0_g1_i2,Trinity_GG_21547_c0_g1_i7,blat.proc3829891.chain_260,blat.proc3829891.chain_262,blat.proc3829891.chain_264,blat.proc3829891.chain_267,blat.proc3829891.chain_269,blat.proc3829891.chain_270,blat.proc3829891.chain_271,blat.proc3829891.chain_273,blat.proc3829891.chain_275	20
scaffold_7	retained_intron	12540189	12540286	-	asmbl_50058	none	blat.proc3829891.chain_1571	1	STRG.9352.1,STRG.9352.2,STRG.9352.3,STRG.9352.4,STRG.9352.5,blat.proc3829891.chain_1570,blat.proc3829891.chain_1572	7
scaffold_4	alternate_exon	247882	247934	+	asmbl_42416	none	Trinity_GG_2300_c0_g1_i1,blat.proc3829873.chain_494	2	STRG.4120.1	1
scaffold_26	spliced_intron	4440010	4440139	+	asmbl_35430	none	blat.proc3829885.chain_1079	1	STRG.28132.1,STRG.28132.2,blat.proc3829885.chain_1080	3
scaffold_20	alt_acceptor	11382741	11382742	+	asmbl_26191,asmbl_26192	none	STRG.23634.2,STRG.23634.3,Trinity_GG_13050_c0_g1_i1,Trinity_GG_13050_c0_g1_i2,blat.proc3829883.chain_704,blat.proc3829883.chain_705	6	STRG.23634.1,STRG.23634.4,STRG.23634.5,Trinity_GG_13050_c0_g1_i4,blat.proc3829883.chain_707	5
scaffold_11	starts_in_intron	2426367	2426367	-	asmbl_6473	none	blat.proc3829893.chain_1758	1	STRG.13378.1,blat.proc3829893.chain_1760	2
scaffold_7	skipped_exon	11767988	11768392	+	asmbl_51066	none	STRG.9278.2	1	STRG.9278.1,blat.proc3829875.chain_1735,blat.proc3829875.chain_1736,blat.proc3829875.chain_1737	4
scaffold_12	retained_intron	7643813	7644059	+	asmbl_8738	none	Trinity_GG_8194_c0_g1_i2,blat.proc3829877.chain_3322	2	STRG.14830.1,Trinity_GG_8194_c0_g1_i1,blat.proc3829877.chain_3321	3
scaffold_16	alternate_exon	14543823	14544409	-	asmbl_16642	none	STRG.19822.2	1	STRG.19822.1,Trinity_GG_28106_c0_g1_i1,blat.proc3829897.chain_788,blat.proc3829897.chain_789,blat.proc3829897.chain_790,blat.proc3829897.chain_791	6
scaffold_19	alt_donor	11583724	11583725	-	asmbl_21642	none	STRG.22486.1,blat.proc3829897.chain_3125,blat.proc3829897.chain_3126	3	STRG.22486.2,blat.proc3829897.chain_3127	2
scaffold_5	alt_donor	4718667	4718668	+	asmbl_43958	none	STRG.5920.2	1	STRG.5920.1,blat.proc3829873.chain_2092	2
scaffold_10	alt_donor	4159781	4159782	-	asmbl_3182	none	STRG.12242.1,blat.proc3829893.chain_685	2	blat.proc3829893.chain_686	1
scaffold_21	starts_in_intron	3099872	3099872	-	asmbl_27530	none	blat.proc3829899.chain_918	1	STRG.23921.1,blat.proc3829899.chain_917	2
scaffold_21	alt_acceptor	1171939	1171940	-	asmbl_27411	none	STRG.23783.2	1	STRG.23783.1,blat.proc3829899.chain_848	2
scaffold_12	ends_in_intron	7650997	7650997	+	asmbl_8741	none	Trinity_GG_8196_c0_g1_i3,blat.proc3829877.chain_3326	2	STRG.14833.3	1
scaffold_28	retained_intron	5755532	5756003	+	asmbl_38301	none	Trinity_GG_16456_c0_g2_i1,blat.proc3829885.chain_2801	2	STRG.29691.1,Trinity_GG_16456_c0_g1_i1,blat.proc3829885.chain_2799	3
scaffold_6	retained_intron	4826646	4826724	-	asmbl_48302	none	blat.proc3829889.chain_3497	1	STRG.7452.1,blat.proc3829889.chain_3498	2
scaffold_7	starts_in_intron	5235112	5235112	+	asmbl_50686,asmbl_50687	none	blat.proc3829875.chain_1292,blat.proc3829875.chain_1293	2	STRG.8853.1,blat.proc3829875.chain_1294,blat.proc3829875.chain_1296	3
scaffold_10	ends_in_intron	9062375	9062375	-	asmbl_3574	none	Trinity_GG_24084_c0_g1_i4,blat.proc3829893.chain_1167	2	STRG.12643.1,STRG.12643.2,blat.proc3829893.chain_1168,blat.proc3829893.chain_1169	4
scaffold_12	starts_in_intron	8891679	8891679	+	asmbl_8802	none	blat.proc3829877.chain_3410	1	STRG.14881.1,STRG.14881.2,STRG.14881.3,Trinity_GG_8240_c0_g1_i1,Trinity_GG_8240_c0_g1_i2,blat.proc3829877.chain_3411,blat.proc3829877.chain_3412	7
scaffold_5	starts_in_intron	223515	223515	-	asmbl_45149	none	blat.proc3829889.chain_1705	1	STRG.5586.1,blat.proc3829889.chain_1708	2
scaffold_3	spliced_intron	13327018	13327170	-	asmbl_39200,asmbl_39201	none	STRG.3677.1,Trinity_GG_19030_c0_g1_i2,blat.proc3829887.chain_3455	3	STRG.3677.2,Trinity_GG_19030_c0_g1_i3,blat.proc3829887.chain_3454	3
scaffold_6	alt_acceptor	13709433	13709434	-	asmbl_48874,asmbl_48875	none	STRG.8114.1,blat.proc3829891.chain_425,blat.proc3829891.chain_426	3	STRG.8114.2	1
scaffold_22	alternate_exon	11477814	11477923	+	asmbl_29682	none	Trinity_GG_14064_c0_g1_i2,blat.proc3829883.chain_2402	2	STRG.25476.1,STRG.25476.2,STRG.25476.3,STRG.25476.4,Trinity_GG_14064_c0_g1_i3,Trinity_GG_14064_c0_g1_i4,blat.proc3829883.chain_2403,blat.proc3829883.chain_2404	8
scaffold_26	spliced_intron	9853517	9853606	+	asmbl_35804,asmbl_35807,asmbl_35808,asmbl_35810,asmbl_35812,asmbl_35813,asmbl_35815,asmbl_35816	none	STRG.28526.1,STRG.28526.2,STRG.28526.3,blat.proc3829885.chain_1558,blat.proc3829885.chain_1559,blat.proc3829885.chain_1561,blat.proc3829885.chain_1564,blat.proc3829885.chain_1565	8	STRG.28526.5,blat.proc3829885.chain_1556,blat.proc3829885.chain_1557,blat.proc3829885.chain_1560,blat.proc3829885.chain_1562,blat.proc3829885.chain_1563,blat.proc3829885.chain_1566,blat.proc3829885.chain_1567	8
scaffold_3	starts_in_intron	17142918	17142918	+	asmbl_40616	none	Trinity_GG_2220_c0_g1_i2	1	STRG.3952.2	1
scaffold_22	retained_exon	5981805	5981878	-	asmbl_30068	none	STRG.24932.4	1	STRG.24932.1,STRG.24932.2,STRG.24932.3	3
scaffold_3	ends_in_intron	11522959	11522959	+	asmbl_40312	none	Trinity_GG_1986_c0_g1_i3,blat.proc3829871.chain_3682	2	STRG.3580.1,STRG.3580.2,Trinity_GG_1986_c0_g1_i4,blat.proc3829871.chain_3683,blat.proc3829871.chain_3684,blat.proc3829871.chain_3685	6
scaffold_5	starts_in_intron	3533188	3533188	-	asmbl_45304	none	blat.proc3829889.chain_1909	1	STRG.5818.1,STRG.5818.2,Trinity_GG_20293_c0_g1_i1,blat.proc3829889.chain_1908	4
scaffold_18	starts_in_intron	6344886	6344886	-	asmbl_19932	none	blat.proc3829897.chain_2224	1	STRG.21355.1,blat.proc3829897.chain_2223	2
scaffold_19	starts_in_intron	9461071	9461071	+	asmbl_22403	none	STRG.22363.3,blat.proc3829881.chain_3290	2	STRG.22363.1,STRG.22363.2,blat.proc3829881.chain_3288,blat.proc3829881.chain_3289	4
scaffold_17	alt_acceptor	6684380	6684381	+	asmbl_17994	none	STRG.20309.1,blat.proc3829881.chain_1059	2	STRG.20309.3,blat.proc3829881.chain_1060	2
scaffold_27	ends_in_intron	3092822	3092822	-	asmbl_36843	none	Trinity_GG_33109_c0_g1_i6,blat.proc3829901.chain_1952	2	STRG.28775.1,STRG.28775.3,STRG.28775.4,STRG.28775.5,blat.proc3829901.chain_1946,blat.proc3829901.chain_1947,blat.proc3829901.chain_1951	7
scaffold_13	spliced_intron	4457825	4458511	+	asmbl_10774,asmbl_10775	none	STRG.15755.1,Trinity_GG_8663_c0_g1_i6,blat.proc3829879.chain_451,blat.proc3829879.chain_452	4	STRG.15755.2,Trinity_GG_8663_c0_g2_i2,blat.proc3829879.chain_450,blat.proc3829879.chain_455	4
scaffold_3	alt_donor	16443803	16443804	+	asmbl_40582,asmbl_40586	none	STRG.3919.1,STRG.3919.2,blat.proc3829873.chain_305	3	STRG.3919.3,blat.proc3829873.chain_306	2
scaffold_20	starts_in_intron	11744525	11744525	-	asmbl_27120	none	blat.proc3829899.chain_599	1	STRG.23678.1,blat.proc3829899.chain_601	2
scaffold_4	spliced_intron	11075139	11075491	+	asmbl_43033	none	STRG.4827.2,Trinity_GG_2673_c0_g1_i2,blat.proc3829873.chain_1144	3	STRG.4827.3,Trinity_GG_2673_c1_g1_i1,blat.proc3829873.chain_1146	3
scaffold_16	alternate_exon	6094643	6100513	-	asmbl_16313	none	blat.proc3829897.chain_383	1	blat.proc3829897.chain_381	1
scaffold_28	retained_intron	6557835	6557938	-	asmbl_37687,asmbl_37688	none	STRG.29733.3,blat.proc3829901.chain_2867	2	STRG.29733.1,STRG.29733.2,blat.proc3829901.chain_2868	3
scaffold_6	starts_in_intron	16951391	16951391	+	asmbl_47661	none	Trinity_GG_4603_c0_g1_i1,blat.proc3829875.chain_764	2	STRG.8404.1,blat.proc3829875.chain_765	2
scaffold_5	alt_donor	4856750	4856751	-	asmbl_45402	none	STRG.5937.2,blat.proc3829889.chain_2019	2	STRG.5937.1,blat.proc3829889.chain_2016,blat.proc3829889.chain_2018	3
scaffold_11	alt_acceptor	5922915	5922916	+	asmbl_5556,asmbl_5557	none	STRG.13651.1,blat.proc3829877.chain_2072,blat.proc3829877.chain_2073	3	STRG.13651.2	1
scaffold_2	alternate_exon	18951171	18951207	+	asmbl_25288	none	Trinity_GG_1522_c0_g1_i6,blat.proc3829871.chain_2879	2	STRG.2768.1,STRG.2768.3,Trinity_GG_1522_c0_g1_i2	3
scaffold_8	alt_acceptor	6115210	6115211	+	asmbl_51923,asmbl_51928	none	STRG.10007.1,Trinity_GG_5582_c0_g1_i2,Trinity_GG_5582_c0_g1_i7,blat.proc3829875.chain_2523,blat.proc3829875.chain_2527	5	STRG.10007.2,Trinity_GG_5582_c0_g1_i5,blat.proc3829875.chain_2522	3
scaffold_19	spliced_intron	8753871	8754300	+	asmbl_22352,asmbl_22353	none	STRG.22316.1,blat.proc3829881.chain_3257,blat.proc3829881.chain_3258	3	blat.proc3829881.chain_3259	1
scaffold_15	spliced_intron	15449482	15449702	+	asmbl_14744,asmbl_14746,asmbl_14747	none	STRG.18933.1,STRG.18933.2,Trinity_GG_10389_c0_g1_i7,blat.proc3829879.chain_3564,blat.proc3829879.chain_3565	5	Trinity_GG_10389_c0_g1_i2,Trinity_GG_10389_c0_g1_i6,blat.proc3829879.chain_3560,blat.proc3829879.chain_3563	4
scaffold_6	retained_intron	12628524	12628614	-	asmbl_48773,asmbl_48775	none	blat.proc3829891.chain_252,blat.proc3829891.chain_255	2	STRG.8013.1,STRG.8013.2,Trinity_GG_21546_c0_g1_i1,Trinity_GG_21546_c0_g1_i2,blat.proc3829891.chain_253,blat.proc3829891.chain_254,blat.proc3829891.chain_256,blat.proc3829891.chain_257	8
scaffold_12	spliced_intron	7669932	7670077	+	asmbl_8749,asmbl_8750	none	STRG.14838.1,Trinity_GG_8201_c0_g1_i4,Trinity_GG_8201_c0_g1_i5,blat.proc3829877.chain_3334,blat.proc3829877.chain_3336	5	STRG.14838.2,blat.proc3829877.chain_3333,blat.proc3829877.chain_3335	3
scaffold_28	skipped_exon	7746453	7747360	-	asmbl_37738	none	STRG.29822.2	1	STRG.29822.1,blat.proc3829901.chain_2849	2
scaffold_13	starts_in_intron	11633015	11633015	-	asmbl_10066	none	blat.proc3829895.chain_1051	1	STRG.16297.1,blat.proc3829895.chain_1049	2
scaffold_19	alt_donor	11522958	11522959	-	asmbl_21627,asmbl_21628,asmbl_21630	none	STRG.22476.1,STRG.22476.2,STRG.22476.4,blat.proc3829897.chain_3123,blat.proc3829897.chain_3124	5	STRG.22476.3	1
scaffold_11	ends_in_intron	7023675	7023675	+	asmbl_5608	none	Trinity_GG_7550_c0_g1_i2,blat.proc3829877.chain_2190	2	STRG.13712.1	1
scaffold_14	retained_exon	11664104	11664175	-	asmbl_13499	none	blat.proc3829895.chain_2184	1	STRG.17495.1,STRG.17495.2,blat.proc3829895.chain_2185,blat.proc3829895.chain_2186,blat.proc3829895.chain_2187	5
scaffold_11	alt_acceptor	8399331	8399332	+	asmbl_5728	none	STRG.13845.1,blat.proc3829877.chain_2345	2	STRG.13845.2,Trinity_GG_7638_c0_g1_i6,blat.proc3829877.chain_2341,blat.proc3829877.chain_2342	4
scaffold_21	alternate_exon	8003456	8003556	-	asmbl_27898	none	STRG.24325.1,blat.proc3829899.chain_1424	2	STRG.24325.3,blat.proc3829899.chain_1427	2
scaffold_15	spliced_intron	1504460	1505131	-	asmbl_14967	none	STRG.17945.1,blat.proc3829895.chain_2662	2	Trinity_GG_27097_c0_g1_i2,Trinity_GG_27097_c0_g1_i5,blat.proc3829895.chain_2659,blat.proc3829895.chain_2660	4
scaffold_15	alternate_exon	5457805	5457903	-	asmbl_15222,asmbl_15223,asmbl_15225	none	STRG.18219.1,blat.proc3829895.chain_2953,blat.proc3829895.chain_2955,blat.proc3829895.chain_2956	4	STRG.18219.3,Trinity_GG_27252_c0_g1_i2,blat.proc3829895.chain_2957	3
scaffold_5	retained_intron	16314540	16314719	+	asmbl_44747	none	blat.proc3829873.chain_2900	1	STRG.6820.1,blat.proc3829873.chain_2898,blat.proc3829873.chain_2899,blat.proc3829873.chain_2901	4
scaffold_1	retained_intron	19045433	19045576	+	asmbl_2564,asmbl_2565	none	STRG.1337.3,blat.proc3829871.chain_1392,blat.proc3829871.chain_1393	3	STRG.1337.2	1
scaffold_14	alt_donor	7497731	7497732	+	asmbl_12144,asmbl_12145,asmbl_12148	none	STRG.17177.2,STRG.17177.3,STRG.17177.4,blat.proc3829879.chain_1834	4	STRG.17177.1	1
scaffold_21	starts_in_intron	730477	730477	+	asmbl_28311	none	STRG.23754.3,Trinity_GG_13126_c0_g3_i1,blat.proc3829883.chain_855	3	STRG.23754.1	1
scaffold_13	alt_acceptor	16190374	16190375	-	asmbl_10251	none	STRG.16653.2	1	STRG.16653.1	1
scaffold_26	alt_acceptor	4690499	4690500	-	asmbl_34859,asmbl_34860,asmbl_34862,asmbl_34864	none	STRG.28179.1,STRG.28179.2,blat.proc3829901.chain_1382,blat.proc3829901.chain_1383,blat.proc3829901.chain_1385	5	STRG.28179.3	1
scaffold_12	spliced_intron	3400110	3400288	+	asmbl_8520	none	blat.proc3829877.chain_3026	1	blat.proc3829877.chain_3025	1
scaffold_1	alt_acceptor	12683636	12683637	+	asmbl_2231	none	STRG.890.1,blat.proc3829871.chain_957	2	STRG.890.2	1
scaffold_16	retained_exon	14189380	14189394	-	asmbl_16618,asmbl_16620	none	STRG.19804.1,STRG.19804.3,blat.proc3829897.chain_687	3	STRG.19804.2,blat.proc3829897.chain_689	2
scaffold_17	ends_in_intron	9007838	9007838	+	asmbl_18182	none	blat.proc3829881.chain_1318	1	STRG.20513.2,STRG.20513.3,blat.proc3829881.chain_1319	3
scaffold_27	alt_acceptor	2820669	2820670	+	asmbl_36075,asmbl_36080,asmbl_36082	none	STRG.28742.2,STRG.28742.3,blat.proc3829885.chain_1802,blat.proc3829885.chain_1803	4	STRG.28742.4	1
scaffold_7	alternate_exon	4514054	4514786	+	asmbl_50615	none	Trinity_GG_4850_c0_g1_i1,Trinity_GG_4850_c0_g1_i2,blat.proc3829875.chain_1225,blat.proc3829875.chain_1226	4	STRG.8814.2	1
scaffold_6	alt_donor	4129224	4129225	-	asmbl_48231	none	STRG.7384.3	1	STRG.7384.2,blat.proc3829889.chain_3413	2
scaffold_27	alt_acceptor	2881621	2881622	+	asmbl_36100,asmbl_36101,asmbl_36102	none	STRG.28753.2,STRG.28753.3,blat.proc3829885.chain_1818,blat.proc3829885.chain_1821,blat.proc3829885.chain_1823	5	STRG.28753.1,STRG.28753.4,blat.proc3829885.chain_1817,blat.proc3829885.chain_1820	4
scaffold_23	spliced_intron	7982612	7982719	+	asmbl_31042	none	STRG.26088.2	1	blat.proc3829883.chain_2988	1
scaffold_12	spliced_intron	5635890	5636032	-	asmbl_7645,asmbl_7647,asmbl_7648	none	STRG.14701.1,blat.proc3829893.chain_3064,blat.proc3829893.chain_3065,blat.proc3829893.chain_3066	4	STRG.14701.2	1
scaffold_12	alt_acceptor	5512515	5512516	+	asmbl_8618,asmbl_8619	none	STRG.14689.3,blat.proc3829877.chain_3174	2	STRG.14689.1,STRG.14689.2,blat.proc3829877.chain_3173	3
scaffold_26	ends_in_intron	5043943	5043943	+	asmbl_35471	none	blat.proc3829883.chain_2397	1	STRG.28206.1,blat.proc3829885.chain_1156,blat.proc3829885.chain_1157,blat.proc3829885.chain_1158,blat.proc3829885.chain_1159,blat.proc3829885.chain_1163,blat.proc3829885.chain_1164,blat.proc3829885.chain_1168,blat.proc3829885.chain_1169	9
scaffold_7	alternate_exon	1511335	1511384	+	asmbl_50491	none	STRG.8635.2	1	STRG.8635.1,Trinity_GG_4714_c0_g1_i1,blat.proc3829875.chain_989	3
scaffold_7	spliced_intron	11412972	11413205	+	asmbl_51054	none	STRG.9275.2,blat.proc3829875.chain_1665	2	STRG.9275.3,blat.proc3829875.chain_1663	2
scaffold_10	alt_donor	4058756	4058757	-	asmbl_3166,asmbl_3167	none	STRG.12237.1,STRG.12237.4,blat.proc3829893.chain_706,blat.proc3829893.chain_709	4	STRG.12237.2,STRG.12237.3,blat.proc3829893.chain_710	3
scaffold_2	alternate_exon	4555860	4556007	-	asmbl_23112	none	STRG.1882.2	1	STRG.1882.1,Trinity_GG_18054_c0_g1_i1,blat.proc3829887.chain_1716	3
scaffold_6	starts_in_intron	13200959	13200959	+	asmbl_47431	none	Trinity_GG_4442_c0_g1_i3,blat.proc3829875.chain_516	2	STRG.8074.1,blat.proc3829875.chain_515	2
scaffold_15	alt_acceptor	11941297	11941298	-	asmbl_15556,asmbl_15557	none	STRG.18626.1,blat.proc3829895.chain_3336	2	STRG.18626.2,blat.proc3829895.chain_3337	2
scaffold_25	retained_intron	6068856	6068946	-	asmbl_34292	none	blat.proc3829901.chain_718	1	STRG.27475.1,blat.proc3829901.chain_716,blat.proc3829901.chain_717,blat.proc3829901.chain_719,blat.proc3829901.chain_721,blat.proc3829901.chain_722	6
scaffold_5	alternate_exon	3592653	3592810	-	asmbl_45309,asmbl_45312	none	STRG.5822.2,STRG.5822.4,blat.proc3829889.chain_1927	3	STRG.5822.1	1
scaffold_10	alt_acceptor	9465714	9465715	+	asmbl_4661	none	STRG.12681.2	1	STRG.12681.1,blat.proc3829877.chain_1239	2
scaffold_4	spliced_intron	3528251	3528471	-	asmbl_41191	none	STRG.4277.5	1	STRG.4277.1	1
scaffold_16	spliced_intron	433381	433451	-	asmbl_16043,asmbl_16044,asmbl_16045,asmbl_16046,asmbl_16047,asmbl_16048,asmbl_16050,asmbl_16051	none	STRG.19039.1,blat.proc3829897.chain_17,blat.proc3829897.chain_18,blat.proc3829897.chain_19,blat.proc3829897.chain_20,blat.proc3829897.chain_21,blat.proc3829897.chain_23,blat.proc3829897.chain_24	8	blat.proc3829897.chain_25,blat.proc3829897.chain_26	2
scaffold_17	alt_acceptor	8808754	8808755	-	asmbl_19165	none	STRG.20479.1,blat.proc3829897.chain_1441	2	STRG.20479.2,blat.proc3829897.chain_1443	2
scaffold_2	starts_in_intron	14545453	14545453	+	asmbl_24977	none	Trinity_GG_1360_c3_g1_i1,blat.proc3829871.chain_2574	2	STRG.2454.1,STRG.2454.2	2
scaffold_9	alternate_exon	4204204	4204343	+	asmbl_53921	none	STRG.11013.4,blat.proc3829875.chain_3429	2	STRG.11013.3	1
scaffold_17	retained_intron	1353517	1353628	+	asmbl_17731	none	STRG.19960.2,Trinity_GG_10940_c0_g1_i2,blat.proc3829881.chain_802	3	STRG.19960.1,blat.proc3829881.chain_801	2
scaffold_12	alt_acceptor	7430810	7430811	+	asmbl_8718,asmbl_8719	none	STRG.14810.1,Trinity_GG_8184_c0_g1_i1,Trinity_GG_8184_c0_g1_i2,blat.proc3829877.chain_3305,blat.proc3829877.chain_3306	5	STRG.14810.2	1
scaffold_16	retained_intron	154458	154650	-	asmbl_16011	none	Trinity_GG_27691_c0_g1_i4	1	STRG.19000.1,Trinity_GG_27691_c0_g1_i8	2
scaffold_25	alternate_exon	8704268	8704628	+	asmbl_33746,asmbl_33749,asmbl_33750	none	STRG.27679.1,STRG.27679.2,STRG.27679.3,blat.proc3829885.chain_694,blat.proc3829885.chain_698,blat.proc3829885.chain_701	6	blat.proc3829885.chain_691,blat.proc3829885.chain_702	2
scaffold_12	alternate_exon	12441162	12441209	+	asmbl_8969,asmbl_8970,asmbl_8972	none	STRG.15137.2,STRG.15137.3,STRG.15137.4,blat.proc3829877.chain_3558,blat.proc3829877.chain_3559,blat.proc3829877.chain_3560	6	STRG.15137.1	1
scaffold_24	skipped_exon	6784331	6785132	-	asmbl_32965	none	STRG.26713.1	1	STRG.26713.2,STRG.26713.4	2
scaffold_27	starts_in_intron	9434501	9434501	-	asmbl_37092,asmbl_37094	none	STRG.29170.2,STRG.29170.3,blat.proc3829901.chain_2275	3	STRG.29170.1,blat.proc3829901.chain_2276	2
scaffold_9	alt_acceptor	11812441	11812442	-	asmbl_55276	none	STRG.11486.1,blat.proc3829891.chain_3596	2	STRG.11486.2,STRG.11486.3,blat.proc3829891.chain_3597	3
scaffold_25	skipped_exon	3292205	3293927	-	asmbl_34105,asmbl_34106	none	STRG.27260.1,STRG.27260.3,blat.proc3829901.chain_581	3	STRG.27260.4	1
scaffold_11	retained_exon	8896441	8896553	-	asmbl_6866	none	STRG.13898.1	1	STRG.13898.2	1
scaffold_11	spliced_intron	4744010	4744101	-	asmbl_6598,asmbl_6599,asmbl_6600,asmbl_6601	none	STRG.13555.1,STRG.13555.2,blat.proc3829893.chain_2035,blat.proc3829893.chain_2037,blat.proc3829893.chain_2039	5	blat.proc3829893.chain_2040	1
scaffold_28	retained_intron	5358747	5358813	-	asmbl_37610	none	STRG.29661.2	1	STRG.29661.1,blat.proc3829901.chain_2785	2
scaffold_5	alt_acceptor	7410119	7410120	-	asmbl_45559	none	STRG.6135.2	1	STRG.6135.1,STRG.6135.3	2
scaffold_24	spliced_intron	10346483	10346648	-	asmbl_33173	none	STRG.26976.1	1	STRG.26976.2	1
scaffold_13	alternate_exon	7528669	7528766	-	asmbl_9858	none	STRG.16032.1,Trinity_GG_26032_c0_g1_i1,blat.proc3829895.chain_832	3	STRG.16032.2,STRG.16032.3,Trinity_GG_26032_c0_g1_i3,Trinity_GG_26032_c0_g1_i4,blat.proc3829895.chain_831,blat.proc3829895.chain_833	6
scaffold_13	alt_acceptor	5815169	5815170	+	asmbl_10881	none	STRG.15880.3	1	STRG.15880.1,STRG.15880.4	2
scaffold_10	ends_in_intron	950492	950492	+	asmbl_4174	none	Trinity_GG_6645_c0_g1_i4,blat.proc3829877.chain_651	2	STRG.11969.1,STRG.11969.2,Trinity_GG_6645_c0_g1_i1,Trinity_GG_6645_c0_g1_i3,Trinity_GG_6645_c0_g1_i5,Trinity_GG_6645_c0_g1_i6,blat.proc3829877.chain_649,blat.proc3829877.chain_650,blat.proc3829877.chain_652,blat.proc3829877.chain_653	10
scaffold_28	skipped_exon	3117227	3117613	-	asmbl_37458	none	STRG.29495.2	1	STRG.29495.1,blat.proc3829901.chain_2613	2
scaffold_11	retained_intron	6251734	6253377	+	asmbl_5583	none	STRG.13670.3,Trinity_GG_7547_c0_g1_i1,Trinity_GG_7547_c1_g1_i1,blat.proc3829877.chain_2182	4	STRG.13670.1,blat.proc3829877.chain_2180	2
scaffold_12	retained_intron	6429911	6430170	+	asmbl_8648	none	blat.proc3829877.chain_3160	1	STRG.14732.1,blat.proc3829877.chain_3159	2
scaffold_4	starts_in_intron	4015978	4015978	+	asmbl_42535	none	Trinity_GG_2398_c0_g1_i2,blat.proc3829873.chain_671	2	STRG.4304.1,blat.proc3829873.chain_670	2
scaffold_20	alt_acceptor	1624139	1624140	-	asmbl_26524	none	STRG.22888.2	1	STRG.22888.1,STRG.22888.3	2
scaffold_28	spliced_intron	8030132	8030254	+	asmbl_38411	none	STRG.29852.2	1	Trinity_GG_16531_c0_g1_i1	1
scaffold_4	starts_in_intron	14664942	14664942	-	asmbl_41821	none	blat.proc3829889.chain_1130	1	STRG.5095.1,Trinity_GG_19835_c0_g1_i2,blat.proc3829889.chain_1128,blat.proc3829889.chain_1129	4
scaffold_25	alt_acceptor	7905410	7905411	-	asmbl_34386	none	blat.proc3829901.chain_904	1	blat.proc3829901.chain_903	1
scaffold_11	retained_intron	1304892	1305131	-	asmbl_6401	none	Trinity_GG_24473_c0_g1_i2,blat.proc3829893.chain_1779	2	STRG.13304.1,blat.proc3829893.chain_1780,blat.proc3829893.chain_1781	3
scaffold_20	starts_in_intron	4479869	4479869	-	asmbl_26657,asmbl_26660,asmbl_26661	none	blat.proc3829899.chain_55,blat.proc3829899.chain_56,blat.proc3829899.chain_57	3	STRG.23113.1,STRG.23113.2,blat.proc3829899.chain_58,blat.proc3829899.chain_59	4
scaffold_2	spliced_intron	6768217	6768941	+	asmbl_24517,asmbl_24521	none	STRG.2035.1,Trinity_GG_1102_c0_g1_i1,Trinity_GG_1102_c0_g1_i2,blat.proc3829871.chain_2008,blat.proc3829871.chain_2011	5	Trinity_GG_1102_c0_g1_i11,Trinity_GG_1102_c0_g1_i5,Trinity_GG_1102_c0_g1_i7,Trinity_GG_1102_c0_g1_i8,blat.proc3829871.chain_2005,blat.proc3829871.chain_2009,blat.proc3829871.chain_2010,blat.proc3829871.chain_2012	8
scaffold_5	spliced_intron	11630266	11630428	-	asmbl_45800	none	blat.proc3829889.chain_2525	1	blat.proc3829889.chain_2526,blat.proc3829889.chain_2528	2
scaffold_14	alternate_exon	15044929	15045374	-	asmbl_13688	none	STRG.17719.2	1	STRG.17719.1	1
scaffold_11	starts_in_intron	3560584	3560584	-	asmbl_6529,asmbl_6530	none	STRG.13471.2,blat.proc3829893.chain_1943	2	STRG.13471.1,blat.proc3829893.chain_1946	2
scaffold_5	starts_in_intron	16292115	16292115	+	asmbl_44737	none	Trinity_GG_3725_c0_g1_i1,blat.proc3829873.chain_2942	2	STRG.6811.3,blat.proc3829873.chain_2945	2
scaffold_17	alt_donor	4289158	4289159	-	asmbl_18891	none	blat.proc3829897.chain_1102	1	STRG.20169.1,blat.proc3829897.chain_1100,blat.proc3829897.chain_1101	3
scaffold_28	alt_donor	9407833	9407834	+	asmbl_38476	none	STRG.29949.1,blat.proc3829885.chain_3027	2	STRG.29949.2,blat.proc3829885.chain_3026	2
scaffold_6	alternate_exon	2681910	2681944	-	asmbl_48095	none	STRG.7253.2	1	STRG.7253.1,blat.proc3829889.chain_3239	2
scaffold_26	alternate_exon	1322187	1322526	-	asmbl_34678	none	blat.proc3829901.chain_1142	1	STRG.27898.2,STRG.27898.3,blat.proc3829901.chain_1144	3
scaffold_8	alternate_exon	9115614	9115656	-	asmbl_52993,asmbl_52994,asmbl_52995	none	STRG.10159.1,blat.proc3829891.chain_2331,blat.proc3829891.chain_2332,blat.proc3829891.chain_2333	4	STRG.10159.2	1
scaffold_5	retained_exon	15706085	15706211	+	asmbl_44672,asmbl_44675	none	STRG.6756.1,blat.proc3829873.chain_2831,blat.proc3829873.chain_2832	3	STRG.6756.2	1
scaffold_26	retained_intron	5891547	5891797	+	asmbl_35579	none	STRG.28280.3,blat.proc3829885.chain_1313	2	STRG.28280.1,blat.proc3829885.chain_1312,blat.proc3829885.chain_1314	3
scaffold_2	retained_intron	14193481	14193569	-	asmbl_23580,asmbl_23581,asmbl_23582,asmbl_23584,asmbl_23586	none	STRG.2417.1,STRG.2417.2,blat.proc3829887.chain_2207,blat.proc3829887.chain_2209,blat.proc3829887.chain_2212	5	blat.proc3829887.chain_2208,blat.proc3829887.chain_2210	2
scaffold_19	alternate_exon	3550170	3550734	+	asmbl_22126,asmbl_22127	none	STRG.22033.4	1	STRG.22033.1,STRG.22033.2,STRG.22033.3	3
scaffold_17	starts_in_intron	14268152	14268152	-	asmbl_19464	none	Trinity_GG_28735_c0_g1_i2,blat.proc3829897.chain_1789	2	STRG.20888.1	1
scaffold_13	alt_donor	7443068	7443069	+	asmbl_11035	none	blat.proc3829879.chain_784	1	STRG.16025.1,STRG.16025.2,blat.proc3829879.chain_783	3
scaffold_1	retained_intron	11626819	11626939	-	asmbl_658	none	blat.proc3829887.chain_617	1	STRG.767.1,Trinity_GG_17396_c0_g1_i3,Trinity_GG_17396_c0_g1_i4,blat.proc3829887.chain_614,blat.proc3829887.chain_615	5
scaffold_8	alt_donor	17494718	17494719	+	asmbl_52474,asmbl_52478	none	STRG.10668.3,blat.proc3829875.chain_3156,blat.proc3829875.chain_3158	3	STRG.10668.1,STRG.10668.4,blat.proc3829875.chain_3152,blat.proc3829875.chain_3153,blat.proc3829875.chain_3157	5
scaffold_21	skipped_exon	3169154	3170344	+	asmbl_28491,asmbl_28493	none	blat.proc3829883.chain_1049,blat.proc3829883.chain_1055	2	STRG.23945.1,STRG.23945.2,STRG.23945.3,blat.proc3829883.chain_1050,blat.proc3829883.chain_1051,blat.proc3829883.chain_1052,blat.proc3829883.chain_1053,blat.proc3829883.chain_1054,blat.proc3829883.chain_1056	9
scaffold_14	alt_donor	8756732	8756733	-	asmbl_13327	none	STRG.17300.2	1	STRG.17300.1,blat.proc3829895.chain_1958	2
scaffold_2	ends_in_intron	2790057	2790057	-	asmbl_22942	none	blat.proc3829887.chain_1559	1	STRG.1724.1,STRG.1724.2,blat.proc3829887.chain_1558,blat.proc3829887.chain_1561	4
scaffold_16	starts_in_intron	4910546	4910546	-	asmbl_16253	none	Trinity_GG_27837_c2_g1_i1,blat.proc3829897.chain_315	2	STRG.19258.1,STRG.19258.2,STRG.19258.3,Trinity_GG_27837_c0_g1_i3,blat.proc3829897.chain_313	5
scaffold_14	retained_intron	5451413	5451514	+	asmbl_11992	none	Trinity_GG_9352_c0_g1_i1,blat.proc3829879.chain_1725	2	STRG.17005.1,Trinity_GG_9352_c0_g1_i6,blat.proc3829879.chain_1723	3
scaffold_11	skipped_exon	3091771	3092702	+	asmbl_5360	none	STRG.13419.1	1	STRG.13419.2,blat.proc3829877.chain_1889	2
scaffold_1	alt_acceptor	5769881	5769882	+	asmbl_1784	none	STRG.387.1,blat.proc3829871.chain_357	2	STRG.387.2,blat.proc3829871.chain_356	2
scaffold_20	spliced_intron	6280984	6281051	+	asmbl_25810	none	STRG.23212.2	1	STRG.23212.1	1
scaffold_12	skipped_exon	15678646	15679640	-	asmbl_8234,asmbl_8235	none	STRG.15344.3,blat.proc3829895.chain_19	2	STRG.15344.1,STRG.15344.2,STRG.15344.4,STRG.15344.5,blat.proc3829895.chain_20,blat.proc3829895.chain_21,blat.proc3829895.chain_22	7
scaffold_15	alt_acceptor	15871121	15871122	+	asmbl_14785,asmbl_14786	none	STRG.18959.1,STRG.18959.2,blat.proc3829879.chain_3576	3	STRG.18959.3	1
scaffold_1	alt_donor	18339123	18339124	+	asmbl_2540	none	STRG.1291.2	1	STRG.1291.1,blat.proc3829871.chain_1250	2
scaffold_21	alt_donor	8173382	8173383	+	asmbl_28806	none	STRG.24337.2,blat.proc3829883.chain_1467	2	STRG.24337.1	1
scaffold_2	alt_acceptor	4788559	4788560	+	asmbl_24403	none	STRG.1897.3,blat.proc3829871.chain_1851	2	STRG.1897.1,STRG.1897.5,blat.proc3829871.chain_1853,blat.proc3829871.chain_1854	4
scaffold_1	retained_intron	4927829	4928203	-	asmbl_233	none	Trinity_GG_17172_c0_g1_i2	1	STRG.305.1,Trinity_GG_17172_c0_g1_i1	2
scaffold_5	alt_donor	8579137	8579138	+	asmbl_44218	none	STRG.6183.2	1	STRG.6183.1,Trinity_GG_3378_c0_g1_i1,blat.proc3829873.chain_2330	3
scaffold_16	starts_in_intron	5750998	5750998	+	asmbl_17017	none	blat.proc3829881.chain_159	1	STRG.19307.1,STRG.19307.2,Trinity_GG_10568_c0_g1_i1,blat.proc3829881.chain_157,blat.proc3829881.chain_160	5
scaffold_5	alt_acceptor	8368146	8368147	+	asmbl_44201	none	STRG.6168.2	1	STRG.6168.1,Trinity_GG_3338_c0_g1_i1,blat.proc3829873.chain_2265,blat.proc3829873.chain_2266	4
scaffold_26	starts_in_intron	9609151	9609151	+	asmbl_35771	none	blat.proc3829885.chain_1428	1	STRG.28493.1,Trinity_GG_15716_c0_g1_i2,blat.proc3829885.chain_1427	3
scaffold_2	ends_in_intron	16058911	16058911	+	asmbl_25119	none	blat.proc3829871.chain_2729	1	STRG.2544.1,blat.proc3829871.chain_2728	2
scaffold_21	alt_donor	1302278	1302279	-	asmbl_27430,asmbl_27431,asmbl_27432	none	STRG.23801.2,STRG.23801.3,Trinity_GG_30279_c0_g1_i1,Trinity_GG_30279_c0_g1_i2,Trinity_GG_30279_c0_g1_i3,blat.proc3829899.chain_875,blat.proc3829899.chain_876,blat.proc3829899.chain_877	8	STRG.23801.1,STRG.23801.4	2
scaffold_16	alt_acceptor	146834	146835	-	asmbl_16005	none	STRG.19000.1,Trinity_GG_27691_c0_g1_i8	2	Trinity_GG_27691_c0_g1_i3,Trinity_GG_27691_c0_g1_i4,Trinity_GG_27691_c0_g1_i7,blat.proc3829897.chain_66,blat.proc3829897.chain_69	5
scaffold_18	alt_acceptor	9167892	9167893	+	asmbl_20906	none	STRG.21549.2	1	STRG.21549.1,STRG.21549.3,Trinity_GG_11916_c0_g1_i2,blat.proc3829881.chain_2540	4
scaffold_7	alternate_exon	10545185	10548959	-	asmbl_49942	none	STRG.9219.1,blat.proc3829891.chain_1473	2	STRG.9219.3	1
scaffold_11	retained_intron	8075675	8075767	-	asmbl_6817	none	blat.proc3829893.chain_2198	1	STRG.13802.1,STRG.13802.2,Trinity_GG_24711_c0_g1_i17,Trinity_GG_24711_c0_g1_i18,Trinity_GG_24711_c0_g1_i2,Trinity_GG_24711_c0_g1_i3,Trinity_GG_24711_c0_g1_i5,Trinity_GG_24711_c0_g1_i8,blat.proc3829893.chain_2197,blat.proc3829893.chain_2200,blat.proc3829893.chain_2201,blat.proc3829893.chain_2204,blat.proc3829893.chain_2205,blat.proc3829893.chain_2206,blat.proc3829893.chain_2209,blat.proc3829893.chain_2211	16
scaffold_14	alternate_exon	12630087	12632590	-	asmbl_13564,asmbl_13567,asmbl_13568,asmbl_13572	none	STRG.17566.1,blat.proc3829895.chain_2326,blat.proc3829895.chain_2327,blat.proc3829895.chain_2329,blat.proc3829895.chain_2331	5	STRG.17566.2,Trinity_GG_26902_c0_g1_i2,blat.proc3829895.chain_2325,blat.proc3829895.chain_2328	4
scaffold_20	starts_in_intron	9500032	9500032	+	asmbl_26012	none	blat.proc3829883.chain_531	1	STRG.23474.2,blat.proc3829883.chain_530	2
scaffold_13	retained_intron	4351	4448	+	asmbl_10420,asmbl_10423	none	STRG.15408.3,Trinity_GG_8474_c0_g1_i1,blat.proc3829879.chain_75	3	STRG.15408.1,STRG.15408.2,Trinity_GG_8474_c0_g1_i2,Trinity_GG_8474_c0_g1_i6,Trinity_GG_8474_c0_g1_i7,blat.proc3829879.chain_71,blat.proc3829879.chain_76,blat.proc3829879.chain_78	8
scaffold_5	retained_intron	4949952	4950472	+	asmbl_43983	none	STRG.5946.2,Trinity_GG_3271_c1_g1_i1,blat.proc3829873.chain_2131	3	STRG.5946.1,STRG.5946.3,Trinity_GG_3271_c0_g1_i1,blat.proc3829873.chain_2130	4
scaffold_2	starts_in_intron	18536013	18536013	-	asmbl_23807	none	Trinity_GG_18525_c0_g1_i2,blat.proc3829887.chain_2564	2	STRG.2729.1,Trinity_GG_18525_c0_g1_i1,blat.proc3829887.chain_2565	3
scaffold_13	retained_intron	7217234	7217779	+	asmbl_11012,asmbl_11013	none	blat.proc3829879.chain_693,blat.proc3829879.chain_700	2	STRG.16002.2,blat.proc3829879.chain_699	2
scaffold_13	alternate_exon	904335	912229	-	asmbl_9340,asmbl_9341,asmbl_9342,asmbl_9345,asmbl_9346	none	STRG.15448.1,STRG.15448.3,STRG.15448.4,STRG.15448.5,STRG.15448.6,blat.proc3829895.chain_212,blat.proc3829895.chain_213,blat.proc3829895.chain_215	8	STRG.15448.2,STRG.15448.7,Trinity_GG_25690_c0_g1_i6,blat.proc3829895.chain_217	4
scaffold_5	skipped_exon	11913476	11914441	+	asmbl_44443	none	STRG.6437.1,blat.proc3829873.chain_2597	2	STRG.6437.2,blat.proc3829873.chain_2598	2
scaffold_2	alt_acceptor	20327888	20327889	-	asmbl_23912	none	STRG.2878.1,blat.proc3829887.chain_2686	2	STRG.2878.2	1
scaffold_17	ends_in_intron	1124587	1124587	+	asmbl_17719	none	blat.proc3829881.chain_782	1	STRG.19947.1,STRG.19947.2,blat.proc3829881.chain_780,blat.proc3829881.chain_781,blat.proc3829881.chain_783	5
scaffold_14	retained_intron	7298351	7298744	+	asmbl_12127,asmbl_12129	none	STRG.17153.3,blat.proc3829879.chain_1852	2	STRG.17153.1,STRG.17153.2,blat.proc3829879.chain_1853,blat.proc3829879.chain_1854,blat.proc3829879.chain_1855	5
scaffold_9	retained_exon	4899092	4899133	+	asmbl_53948	none	blat.proc3829875.chain_3518	1	STRG.11053.1,STRG.11053.2	2
scaffold_28	retained_intron	295538	295617	+	asmbl_37965	none	blat.proc3829885.chain_2400	1	STRG.29243.1,STRG.29243.2,STRG.29243.3,blat.proc3829885.chain_2398,blat.proc3829885.chain_2399,blat.proc3829885.chain_2401	6
scaffold_21	starts_in_intron	3785876	3785876	-	asmbl_27566,asmbl_27567	none	STRG.23954.1,blat.proc3829899.chain_1018	2	blat.proc3829899.chain_1017	1
scaffold_20	alt_acceptor	10786648	10786649	+	asmbl_26147	none	STRG.23592.2,blat.proc3829883.chain_740	2	STRG.23592.1,Trinity_GG_13065_c0_g1_i2,blat.proc3829883.chain_743	3
scaffold_23	spliced_intron	2197978	2198128	-	asmbl_31429	none	STRG.25670.1	1	STRG.25670.2	1
scaffold_24	alt_acceptor	9119907	9119908	+	asmbl_32513,asmbl_32515	none	blat.proc3829885.chain_101,blat.proc3829885.chain_97	2	Trinity_GG_14906_c0_g1_i10,blat.proc3829885.chain_103,blat.proc3829885.chain_99	3
scaffold_7	alt_acceptor	6878393	6878394	+	asmbl_50760	none	STRG.8936.1	1	STRG.8936.2	1
scaffold_27	alternate_exon	2997064	2997281	+	asmbl_36118	none	STRG.28767.3	1	STRG.28767.5,blat.proc3829885.chain_1839,blat.proc3829885.chain_1841	3
scaffold_21	starts_in_intron	7728904	7728904	+	asmbl_28783	none	blat.proc3829883.chain_1448	1	STRG.24301.1,STRG.24301.2,STRG.24301.4,blat.proc3829883.chain_1449	4
scaffold_1	spliced_intron	5957952	5958646	+	asmbl_1791,asmbl_1792	none	STRG.392.1,Trinity_GG_229_c0_g1_i2,blat.proc3829871.chain_386	3	STRG.392.2,Trinity_GG_229_c0_g1_i1,blat.proc3829871.chain_387	3
scaffold_21	spliced_intron	5183291	5183495	+	asmbl_28575	none	STRG.24039.1,Trinity_GG_13320_c0_g1_i1,blat.proc3829883.chain_1186	3	Trinity_GG_13320_c0_g1_i2,blat.proc3829883.chain_1187	2
scaffold_9	retained_intron	17849137	17851107	+	asmbl_54629	none	STRG.11860.3,Trinity_GG_6607_c1_g1_i2,Trinity_GG_6607_c2_g1_i1,blat.proc3829877.chain_590,blat.proc3829877.chain_591	5	STRG.11860.1,STRG.11860.2	2
scaffold_5	alternate_exon	15450037	15451537	-	asmbl_46054	none	STRG.6720.1,blat.proc3829889.chain_2793	2	STRG.6720.2	1
scaffold_7	retained_intron	12412941	12413129	+	asmbl_51136	none	Trinity_GG_5182_c0_g1_i2,blat.proc3829875.chain_1791	2	STRG.9333.1,STRG.9333.2,Trinity_GG_5182_c0_g1_i1,blat.proc3829875.chain_1790	4
scaffold_11	alt_donor	11785562	11785563	+	asmbl_5963	none	STRG.14087.2	1	STRG.14087.4,STRG.14087.5	2
scaffold_19	spliced_intron	11168790	11168939	+	asmbl_22476	none	blat.proc3829881.chain_3334	1	blat.proc3829881.chain_3332,blat.proc3829881.chain_3335	2
scaffold_14	alternate_exon	15831876	15831984	-	asmbl_13738	none	STRG.17811.1	1	STRG.17811.2	1
scaffold_18	retained_intron	8912338	8912443	-	asmbl_20076	none	STRG.21550.6,Trinity_GG_29067_c0_g1_i1,blat.proc3829897.chain_2393	3	STRG.21550.2,STRG.21550.3,STRG.21550.4,blat.proc3829897.chain_2394,blat.proc3829897.chain_2395,blat.proc3829897.chain_2398	6
scaffold_5	alt_acceptor	15764727	15764728	+	asmbl_44683	none	blat.proc3829873.chain_2881	1	STRG.6763.1,blat.proc3829873.chain_2874,blat.proc3829873.chain_2875,blat.proc3829873.chain_2877,blat.proc3829873.chain_2880	5
scaffold_24	alt_acceptor	1423113	1423114	-	asmbl_32720	none	STRG.26376.2,Trinity_GG_31729_c0_g1_i2,blat.proc3829899.chain_3407	3	STRG.26376.1,Trinity_GG_31729_c0_g1_i1,blat.proc3829899.chain_3406	3
scaffold_3	alternate_exon	3252532	3262597	+	asmbl_39905,asmbl_39906	none	blat.proc3829871.chain_3306,blat.proc3829871.chain_3309	2	STRG.3087.4,STRG.3087.5	2
scaffold_18	retained_exon	7229478	7229525	+	asmbl_20753,asmbl_20755	none	STRG.21439.1,STRG.21439.3,blat.proc3829881.chain_2330,blat.proc3829881.chain_2331	4	STRG.21439.2,blat.proc3829881.chain_2327	2
scaffold_16	starts_in_intron	1244750	1244750	-	asmbl_16105	none	blat.proc3829897.chain_104	1	STRG.19076.1,blat.proc3829897.chain_106,blat.proc3829897.chain_107	3
scaffold_5	alt_acceptor	8910827	8910828	-	asmbl_45637	none	STRG.6219.1,blat.proc3829889.chain_2262	2	STRG.6219.2,blat.proc3829889.chain_2263	2
scaffold_1	starts_in_intron	4587703	4587703	+	asmbl_1673	none	Trinity_GG_188_c0_g1_i2,blat.proc3829871.chain_325	2	STRG.280.1,blat.proc3829871.chain_323,blat.proc3829871.chain_324	3
scaffold_2	alternate_exon	7785426	7786347	+	asmbl_24609,asmbl_24611,asmbl_24612	none	STRG.2076.4,STRG.2076.7,blat.proc3829871.chain_2202,blat.proc3829871.chain_2207,blat.proc3829871.chain_2213	5	STRG.2076.2,STRG.2076.5,Trinity_GG_1189_c0_g1_i3,blat.proc3829871.chain_2205,blat.proc3829871.chain_2208,blat.proc3829871.chain_2211,blat.proc3829871.chain_2212	7
scaffold_18	alt_donor	2050958	2050959	-	asmbl_19728,asmbl_19731	none	STRG.21084.1,STRG.21084.3,Trinity_GG_28833_c0_g1_i1,blat.proc3829897.chain_1993	4	STRG.21084.2	1
scaffold_24	skipped_exon	6832860	6834175	+	asmbl_32356,asmbl_32359	none	STRG.26717.2,blat.proc3829883.chain_3661,blat.proc3829883.chain_3662	3	STRG.26717.1,STRG.26717.4,blat.proc3829883.chain_3660	3
scaffold_15	alt_acceptor	15242410	15242411	-	asmbl_15781	none	STRG.18898.1,Trinity_GG_27630_c0_g1_i2,blat.proc3829895.chain_3678	3	STRG.18898.2	1
scaffold_8	ends_in_intron	15267743	15267743	+	asmbl_52388	none	STRG.10545.1	1	STRG.10545.2	1
scaffold_22	retained_intron	8241615	8241803	-	asmbl_30232,asmbl_30234	none	STRG.25164.1,STRG.25164.3,blat.proc3829899.chain_2248	3	STRG.25164.2	1
scaffold_14	retained_intron	11764873	11765001	-	asmbl_13517	none	blat.proc3829895.chain_2228	1	STRG.17518.1,blat.proc3829895.chain_2229	2
scaffold_3	retained_intron	1767415	1767456	+	asmbl_39833,asmbl_39835	none	STRG.2990.2,Trinity_GG_1694_c0_g1_i5	2	STRG.2990.3	1
scaffold_11	spliced_intron	5501775	5501898	-	asmbl_6641	none	blat.proc3829893.chain_2061	1	STRG.13608.2,blat.proc3829893.chain_2062	2
scaffold_17	alt_donor	10069249	10069250	+	asmbl_18294	none	STRG.20614.2	1	STRG.20614.1,Trinity_GG_11298_c0_g1_i1,Trinity_GG_11298_c0_g1_i2,blat.proc3829881.chain_1450,blat.proc3829881.chain_1451	5
scaffold_18	spliced_intron	5990415	5990661	+	asmbl_20671,asmbl_20674,asmbl_20675,asmbl_20680	none	blat.proc3829881.chain_2205,blat.proc3829881.chain_2206,blat.proc3829881.chain_2207,blat.proc3829881.chain_2208,blat.proc3829881.chain_2209,blat.proc3829881.chain_2211,blat.proc3829881.chain_2212	7	blat.proc3829881.chain_2210	1
scaffold_21	retained_intron	5537847	5538423	-	asmbl_27698,asmbl_27702,asmbl_27703,asmbl_27704	none	STRG.24073.2,STRG.24073.3,Trinity_GG_30443_c0_g1_i6,blat.proc3829899.chain_1166,blat.proc3829899.chain_1168	5	STRG.24073.1,blat.proc3829899.chain_1165,blat.proc3829899.chain_1167	3
scaffold_17	skipped_exon	8611499	8614310	+	asmbl_18134,asmbl_18135	none	STRG.20462.1,blat.proc3829881.chain_1270	2	STRG.20462.3,STRG.20462.4,STRG.20462.5,blat.proc3829881.chain_1266,blat.proc3829881.chain_1267,blat.proc3829881.chain_1268,blat.proc3829881.chain_1269,blat.proc3829881.chain_1271	8
scaffold_3	starts_in_intron	7327792	7327792	+	asmbl_40114	none	STRG.3330.2	1	STRG.3330.1,blat.proc3829871.chain_3526,blat.proc3829871.chain_3527	3
scaffold_11	alternate_exon	8472569	8478294	+	asmbl_5745	none	STRG.13851.2,Trinity_GG_7647_c0_g1_i2,Trinity_GG_7647_c1_g1_i1,blat.proc3829877.chain_2360,blat.proc3829877.chain_2364	5	Trinity_GG_7647_c0_g1_i4,blat.proc3829877.chain_2359	2
scaffold_19	ends_in_intron	10766265	10766265	+	asmbl_22455	none	blat.proc3829881.chain_3357	1	STRG.22404.1,blat.proc3829881.chain_3356	2
scaffold_6	alt_acceptor	13711396	13711397	-	asmbl_48877	none	blat.proc3829891.chain_422	1	STRG.8115.1	1
scaffold_15	retained_exon	14511002	14511039	+	asmbl_14632,asmbl_14633	none	STRG.18853.2,STRG.18853.3,blat.proc3829879.chain_3442,blat.proc3829879.chain_3444	4	STRG.18853.1,blat.proc3829879.chain_3443	2
scaffold_20	starts_in_intron	5952264	5952264	-	asmbl_26725	none	blat.proc3829899.chain_160	1	STRG.23191.1,blat.proc3829899.chain_161,blat.proc3829899.chain_162	3
scaffold_13	retained_intron	8357971	8358153	+	asmbl_11110,asmbl_11111,asmbl_11112,asmbl_11113,asmbl_11114,asmbl_11115	none	STRG.16112.1,STRG.16112.3,STRG.16112.4,STRG.16112.5,Trinity_GG_8876_c0_g1_i5,Trinity_GG_8876_c2_g1_i1,blat.proc3829879.chain_889,blat.proc3829879.chain_891,blat.proc3829879.chain_892,blat.proc3829879.chain_893,blat.proc3829879.chain_895	11	STRG.16112.2	1
scaffold_15	retained_intron	13759939	13760410	-	asmbl_15680	none	STRG.18798.2,Trinity_GG_27577_c1_g1_i2,blat.proc3829895.chain_3563	3	blat.proc3829895.chain_3564	1
scaffold_21	ends_in_intron	7425387	7425387	-	asmbl_27831,asmbl_27832	none	blat.proc3829899.chain_1344,blat.proc3829899.chain_1347	2	STRG.24262.1	1
scaffold_21	spliced_intron	1657024	1657137	+	asmbl_28368,asmbl_28369,asmbl_28370,asmbl_28371,asmbl_28372	none	STRG.23807.1,Trinity_GG_13211_c0_g1_i2,Trinity_GG_13211_c0_g1_i3,Trinity_GG_13211_c0_g1_i4,Trinity_GG_13211_c0_g1_i6,Trinity_GG_13211_c0_g1_i7,blat.proc3829883.chain_988,blat.proc3829883.chain_989,blat.proc3829883.chain_990,blat.proc3829883.chain_992,blat.proc3829883.chain_993	11	Trinity_GG_13211_c0_g1_i1,blat.proc3829883.chain_991	2
scaffold_9	skipped_exon	9705515	9707760	+	asmbl_54217	none	STRG.11336.2,blat.proc3829877.chain_109	2	STRG.11336.1,Trinity_GG_6324_c1_g1_i1,blat.proc3829877.chain_110,blat.proc3829877.chain_111,blat.proc3829877.chain_114	5
scaffold_7	starts_in_intron	2736449	2736449	+	asmbl_50543	none	blat.proc3829875.chain_1117	1	STRG.8692.1,blat.proc3829875.chain_1115,blat.proc3829875.chain_1116	3
scaffold_21	retained_intron	5454653	5455337	+	asmbl_28588	none	Trinity_GG_13358_c1_g1_i2,blat.proc3829883.chain_1253	2	STRG.24067.1,Trinity_GG_13358_c1_g2_i1,blat.proc3829883.chain_1252,blat.proc3829883.chain_1255	4
scaffold_5	alt_acceptor	9812046	9812047	+	asmbl_44314,asmbl_44315	none	STRG.6289.4,STRG.6289.5	2	STRG.6289.1,STRG.6289.2,blat.proc3829873.chain_2411,blat.proc3829873.chain_2412	4
scaffold_1	retained_intron	14411093	14411191	-	asmbl_919	none	blat.proc3829887.chain_941	1	STRG.1036.1,blat.proc3829887.chain_940	2
scaffold_4	alternate_exon	7025505	7025774	+	asmbl_42777	none	STRG.4535.1,blat.proc3829873.chain_897	2	STRG.4535.2,blat.proc3829873.chain_898	2
scaffold_6	retained_exon	18174352	18174423	-	asmbl_49165	none	blat.proc3829891.chain_801	1	STRG.8488.1,blat.proc3829891.chain_800	2
scaffold_20	ends_in_intron	9447575	9447575	-	asmbl_26962	none	blat.proc3829899.chain_497	1	STRG.23472.2,blat.proc3829899.chain_495	2
scaffold_16	alt_acceptor	4077924	4077925	+	asmbl_16955,asmbl_16956	none	STRG.19212.1,blat.proc3829881.chain_2,blat.proc3829881.chain_3	3	STRG.19212.2	1
scaffold_5	retained_intron	18561018	18561149	+	asmbl_44925	none	Trinity_GG_3847_c0_g1_i4,blat.proc3829873.chain_3145	2	STRG.6978.1,STRG.6978.2,STRG.6978.3,STRG.6978.4,Trinity_GG_3847_c0_g1_i2,blat.proc3829873.chain_3147,blat.proc3829873.chain_3148,blat.proc3829873.chain_3150	8
scaffold_14	alternate_exon	1159304	1163231	+	asmbl_11784	none	STRG.16763.1,Trinity_GG_9199_c0_g1_i1,blat.proc3829879.chain_1429	3	STRG.16763.2	1
scaffold_2	alt_acceptor	30002	30003	+	asmbl_24076,asmbl_24078,asmbl_24079,asmbl_24081,asmbl_24082	none	STRG.1493.1,STRG.1493.3,Trinity_GG_850_c0_g1_i2,Trinity_GG_850_c0_g1_i6,blat.proc3829871.chain_1521,blat.proc3829871.chain_1525,blat.proc3829871.chain_1526,blat.proc3829871.chain_1527	8	Trinity_GG_850_c0_g1_i1,blat.proc3829871.chain_1524	2
scaffold_11	alternate_exon	3092415	3092987	+	asmbl_5361	none	STRG.13419.3	1	STRG.13419.2,blat.proc3829877.chain_1889	2
scaffold_6	retained_intron	15945144	15945206	+	asmbl_47621	none	STRG.8316.2	1	STRG.8316.1,STRG.8316.3	2
scaffold_11	starts_in_intron	3709662	3709662	-	asmbl_6540	none	blat.proc3829893.chain_1940	1	Trinity_GG_24560_c1_g1_i1,blat.proc3829893.chain_1939	2
scaffold_6	retained_intron	8643223	8643354	+	asmbl_47105	none	blat.proc3829875.chain_104	1	STRG.7737.1,STRG.7737.2,blat.proc3829875.chain_105	3
scaffold_5	spliced_intron	6933262	6933389	+	asmbl_44129	none	blat.proc3829873.chain_2155	1	blat.proc3829873.chain_2154	1
scaffold_3	alt_donor	14466923	14466924	+	asmbl_40488	none	STRG.3783.2	1	STRG.3783.1,Trinity_GG_2124_c0_g1_i1,blat.proc3829873.chain_193	3
scaffold_10	starts_in_intron	14624051	14624051	-	asmbl_3855	none	STRG.12993.1	1	STRG.12993.2	1
scaffold_2	spliced_intron	8064152	8064334	+	asmbl_24644	none	STRG.2103.1,blat.proc3829871.chain_2094	2	Trinity_GG_1147_c0_g1_i1,blat.proc3829871.chain_2095	2
scaffold_3	ends_in_intron	11650115	11650115	-	asmbl_39133	none	blat.proc3829887.chain_3371	1	STRG.3595.1,Trinity_GG_18982_c0_g1_i2,blat.proc3829887.chain_3370	3
scaffold_103	alt_donor	6747	6748	+	asmbl_5190	none	STRG.30115.2	1	STRG.30115.1,blat.proc3829885.chain_3182	2
scaffold_21	starts_in_intron	403076	403076	-	asmbl_27333	none	Trinity_GG_30225_c0_g1_i7,blat.proc3829899.chain_754	2	STRG.23724.1,Trinity_GG_30225_c0_g1_i3,blat.proc3829899.chain_755	3
scaffold_2	retained_intron	14560203	14560372	+	asmbl_24984	none	blat.proc3829871.chain_2565	1	STRG.2454.1,STRG.2454.2,STRG.2454.3,STRG.2454.4,blat.proc3829871.chain_2570	5
scaffold_26	ends_in_intron	3720424	3720424	+	asmbl_35354	none	Trinity_GG_15443_c0_g1_i2,blat.proc3829885.chain_964	2	STRG.28036.1,Trinity_GG_15443_c0_g1_i1,blat.proc3829885.chain_965	3
scaffold_6	starts_in_intron	12088363	12088363	-	asmbl_48728,asmbl_48730	none	STRG.7976.2,blat.proc3829891.chain_193	2	STRG.7976.1,blat.proc3829891.chain_192	2
scaffold_21	alt_acceptor	5973902	5973903	+	asmbl_28616	none	STRG.24125.1,blat.proc3829883.chain_1249	2	blat.proc3829883.chain_1250	1
scaffold_20	skipped_exon	7195568	7196573	+	asmbl_25859	none	STRG.23278.2,blat.proc3829883.chain_407,blat.proc3829883.chain_408	3	STRG.23278.1	1
scaffold_14	spliced_intron	9272764	9273885	-	asmbl_13342	none	STRG.17323.4	1	blat.proc3829895.chain_1994,blat.proc3829895.chain_1998	2
scaffold_5	ends_in_intron	4639199	4639199	-	asmbl_45357	none	blat.proc3829889.chain_1963	1	STRG.5908.1,blat.proc3829889.chain_1962,blat.proc3829889.chain_1964	3
scaffold_7	spliced_intron	4544285	4544372	+	asmbl_50626,asmbl_50628,asmbl_50629	none	STRG.8819.1,blat.proc3829875.chain_1241,blat.proc3829875.chain_1243,blat.proc3829875.chain_1244	4	blat.proc3829875.chain_1242	1
scaffold_10	retained_intron	715100	715709	-	asmbl_2905,asmbl_2907,asmbl_2908,asmbl_2909	none	STRG.11948.2,Trinity_GG_23680_c0_g1_i4,Trinity_GG_23680_c0_g1_i6,blat.proc3829893.chain_435,blat.proc3829893.chain_436,blat.proc3829893.chain_438	6	STRG.11948.1,Trinity_GG_23680_c0_g1_i7,blat.proc3829893.chain_434	3
scaffold_11	retained_intron	6254831	6255055	+	asmbl_5582,asmbl_5584	none	STRG.13670.4,Trinity_GG_7547_c0_g1_i2,Trinity_GG_7547_c0_g1_i6,blat.proc3829877.chain_2178,blat.proc3829877.chain_2179	5	Trinity_GG_7547_c0_g1_i9,blat.proc3829877.chain_2183	2
scaffold_6	ends_in_intron	10389229	10389229	-	asmbl_48634	none	blat.proc3829891.chain_131	1	STRG.7869.1,blat.proc3829891.chain_132	2
scaffold_9	ends_in_intron	14805566	14805566	-	asmbl_55457	none	blat.proc3829891.chain_3727	1	STRG.11692.1	1
scaffold_16	starts_in_intron	290929	290929	+	asmbl_16803	none	Trinity_GG_10430_c0_g1_i4,blat.proc3829879.chain_3642	2	STRG.19012.1,STRG.19012.2,Trinity_GG_10430_c0_g1_i2,blat.proc3829879.chain_3638,blat.proc3829879.chain_3639,blat.proc3829879.chain_3641	6
scaffold_25	starts_in_intron	8506206	8506206	-	asmbl_34424	none	blat.proc3829901.chain_929	1	STRG.27671.1	1
scaffold_4	retained_intron	9254304	9254682	+	asmbl_42940	none	STRG.4718.2	1	STRG.4718.1,blat.proc3829873.chain_1007	2
scaffold_19	alt_donor	11336405	11336406	-	asmbl_21589	none	STRG.22453.1,Trinity_GG_29505_c0_g1_i2,blat.proc3829897.chain_3139	3	STRG.22453.2,Trinity_GG_29505_c0_g1_i1,blat.proc3829897.chain_3138	3
scaffold_2	alt_acceptor	1338710	1338711	-	asmbl_22868	none	STRG.1597.1	1	blat.proc3829887.chain_1382	1
scaffold_26	ends_in_intron	3347150	3347150	-	asmbl_34762	none	blat.proc3829901.chain_1183	1	STRG.27998.1,blat.proc3829901.chain_1182,blat.proc3829901.chain_1184	3
scaffold_5	retained_intron	107811	108165	-	asmbl_45142,asmbl_45144	none	STRG.5570.1,Trinity_GG_20162_c0_g1_i5	2	STRG.5570.2	1
scaffold_7	starts_in_intron	7642914	7642914	-	asmbl_49775	none	blat.proc3829891.chain_1300	1	STRG.9008.1,blat.proc3829891.chain_1299	2
scaffold_2	alt_acceptor	3771268	3771269	+	asmbl_24334	none	blat.proc3829871.chain_1873	1	STRG.1809.1	1
scaffold_9	retained_intron	16656777	16657454	-	asmbl_55563,asmbl_55564,asmbl_55567	none	STRG.11803.2,STRG.11803.4,blat.proc3829893.chain_211,blat.proc3829893.chain_212,blat.proc3829893.chain_213	5	STRG.11803.1,STRG.11803.3,blat.proc3829893.chain_209	3
scaffold_12	alternate_exon	7507226	7507333	-	asmbl_7720	none	STRG.14818.2	1	STRG.14818.1,Trinity_GG_25281_c2_g1_i1,Trinity_GG_25281_c2_g1_i2,blat.proc3829893.chain_3225,blat.proc3829893.chain_3226	5
scaffold_21	alternate_exon	1679095	1679216	+	asmbl_28374,asmbl_28376	none	STRG.23806.2,STRG.23806.3,Trinity_GG_13200_c0_g1_i1,blat.proc3829883.chain_967	4	STRG.23806.1	1
scaffold_10	ends_in_intron	11596566	11596566	+	asmbl_4754	none	blat.proc3829877.chain_1364	1	STRG.12807.1	1
scaffold_5	retained_exon	10890168	10890244	-	asmbl_45766,asmbl_45770	none	STRG.6359.1,blat.proc3829889.chain_2357,blat.proc3829889.chain_2358	3	STRG.6359.2,blat.proc3829889.chain_2353,blat.proc3829889.chain_2356	3
scaffold_15	skipped_exon	2565681	2566519	-	asmbl_15030,asmbl_15033	none	STRG.18037.2,STRG.18037.4,blat.proc3829895.chain_2773	3	STRG.18037.1,STRG.18037.3,STRG.18037.5,blat.proc3829895.chain_2774,blat.proc3829895.chain_2775	5
scaffold_16	retained_intron	325937	326065	-	asmbl_16027,asmbl_16028	none	blat.proc3829897.chain_59,blat.proc3829897.chain_62	2	STRG.19019.1,STRG.19019.2,STRG.19019.3,blat.proc3829897.chain_60,blat.proc3829897.chain_61	5
scaffold_14	skipped_exon	7432572	7433301	+	asmbl_12138,asmbl_12139	none	STRG.17164.1,STRG.17164.3,blat.proc3829879.chain_1885	3	STRG.17164.2,blat.proc3829879.chain_1886	2
scaffold_25	spliced_intron	9043482	9043880	-	asmbl_34447,asmbl_34448	none	STRG.27702.1,STRG.27702.3,blat.proc3829901.chain_982,blat.proc3829901.chain_985,blat.proc3829901.chain_986,blat.proc3829901.chain_988	6	STRG.27702.2,Trinity_GG_32528_c0_g1_i7,blat.proc3829901.chain_983,blat.proc3829901.chain_984	4
scaffold_5	ends_in_intron	3497384	3497384	+	asmbl_43884	none	blat.proc3829873.chain_2004	1	STRG.5819.1,blat.proc3829873.chain_2005	2
scaffold_4	alt_acceptor	3883862	3883863	-	asmbl_41201,asmbl_41202,asmbl_41204	none	STRG.4295.1,STRG.4295.2,STRG.4295.4,blat.proc3829889.chain_421,blat.proc3829889.chain_422	5	STRG.4295.3	1
scaffold_14	spliced_intron	1325764	1325879	+	asmbl_11791	none	STRG.16771.1,blat.proc3829879.chain_1515	2	Trinity_GG_9241_c0_g1_i3,blat.proc3829879.chain_1516	2
scaffold_16	starts_in_intron	8088788	8088788	-	asmbl_16408	none	blat.proc3829897.chain_448	1	STRG.19441.1,blat.proc3829897.chain_446,blat.proc3829897.chain_447,blat.proc3829897.chain_449	4
scaffold_3	retained_intron	14587006	14587312	-	asmbl_39351	none	STRG.3802.1,blat.proc3829887.chain_3646	2	STRG.3802.2,blat.proc3829887.chain_3647	2
scaffold_13	spliced_intron	9997163	9997360	-	asmbl_10008	none	STRG.16227.1,blat.proc3829895.chain_968	2	STRG.16227.2,blat.proc3829895.chain_972	2
scaffold_13	skipped_exon	14561036	14563619	-	asmbl_10167,asmbl_10171	none	STRG.16497.2,blat.proc3829895.chain_1167	2	STRG.16497.3,STRG.16497.4	2
scaffold_6	retained_intron	1585415	1585461	+	asmbl_46675	none	STRG.7199.1,blat.proc3829873.chain_3284	2	blat.proc3829873.chain_3283	1
scaffold_1	spliced_intron	12953678	12953756	-	asmbl_789	none	STRG.920.3,blat.proc3829887.chain_816	2	STRG.920.1,STRG.920.2,blat.proc3829887.chain_814,blat.proc3829887.chain_815	4
scaffold_24	ends_in_intron	3766386	3766386	-	asmbl_32840	none	blat.proc3829899.chain_3600	1	STRG.26543.1,blat.proc3829899.chain_3601	2
scaffold_21	starts_in_intron	2948027	2948027	-	asmbl_27519	none	STRG.23903.2,blat.proc3829899.chain_970	2	STRG.23903.1,Trinity_GG_30331_c0_g1_i3,blat.proc3829899.chain_969,blat.proc3829899.chain_971	4
scaffold_17	retained_intron	13196891	13197082	-	asmbl_19410	none	blat.proc3829897.chain_1736	1	STRG.20803.1,STRG.20803.4,blat.proc3829897.chain_1733,blat.proc3829897.chain_1737	4
scaffold_14	retained_intron	15565493	15565735	+	asmbl_12609	none	STRG.17784.1	1	STRG.17784.2	1
scaffold_7	alt_acceptor	4043329	4043330	-	asmbl_49658	none	STRG.8792.1,blat.proc3829891.chain_1148	2	STRG.8792.2	1
scaffold_24	alt_donor	6018329	6018330	-	asmbl_32910	none	STRG.26642.1,blat.proc3829899.chain_3716	2	STRG.26642.2	1
scaffold_27	retained_intron	5049610	5049786	-	asmbl_36936	none	STRG.28917.1,Trinity_GG_33220_c0_g1_i9,blat.proc3829901.chain_2107	3	STRG.28917.4,STRG.28917.5	2
scaffold_7	alternate_exon	18394449	18394963	-	asmbl_50296	none	blat.proc3829891.chain_1869	1	Trinity_GG_22427_c0_g1_i15,Trinity_GG_22427_c0_g1_i5,blat.proc3829891.chain_1867,blat.proc3829891.chain_1874	4
scaffold_8	alternate_exon	11636560	11640370	-	asmbl_53147,asmbl_53149	none	STRG.10364.1,STRG.10364.3,blat.proc3829891.chain_2493	3	STRG.10364.2,blat.proc3829891.chain_2494	2
scaffold_9	starts_in_intron	18355943	18355943	-	asmbl_55664	none	blat.proc3829893.chain_285	1	STRG.11870.1,STRG.11870.2,blat.proc3829893.chain_284,blat.proc3829893.chain_286	4
scaffold_27	alt_donor	1958975	1958976	+	asmbl_36013,asmbl_36018	none	STRG.28656.1,STRG.28656.2,blat.proc3829885.chain_1693	3	STRG.28656.3,blat.proc3829885.chain_1692,blat.proc3829885.chain_1696	3
scaffold_3	skipped_exon	7924972	7927366	+	asmbl_40144	none	STRG.3376.1	1	STRG.3376.3	1
scaffold_8	retained_intron	7482090	7482283	-	asmbl_52905	none	blat.proc3829891.chain_2149	1	STRG.10067.1,blat.proc3829891.chain_2151,blat.proc3829891.chain_2152	3
scaffold_10	ends_in_intron	2664074	2664074	-	asmbl_3031	none	STRG.12072.2,blat.proc3829893.chain_499	2	STRG.12072.1,blat.proc3829893.chain_501	2
scaffold_12	retained_intron	15013574	15013828	-	asmbl_8169	none	blat.proc3829893.chain_3731	1	STRG.15285.1,STRG.15285.2,blat.proc3829893.chain_3727,blat.proc3829893.chain_3728,blat.proc3829893.chain_3729,blat.proc3829893.chain_3730	6
scaffold_21	alt_donor	6544836	6544837	-	asmbl_27756	none	STRG.24168.2	1	STRG.24168.1,blat.proc3829899.chain_1244	2
scaffold_15	starts_in_intron	12397273	12397273	-	asmbl_15591	none	STRG.18686.3	1	STRG.18686.4,STRG.18686.5,blat.proc3829895.chain_3457	3
scaffold_15	starts_in_intron	1988557	1988557	+	asmbl_13988	none	blat.proc3829879.chain_2653	1	STRG.17976.1,STRG.17976.2,blat.proc3829879.chain_2654,blat.proc3829879.chain_2655	4
scaffold_19	retained_intron	678886	678963	+	asmbl_22002	none	Trinity_GG_12091_c0_g1_i4,blat.proc3829881.chain_2825	2	STRG.21838.1,blat.proc3829881.chain_2826	2
scaffold_3	starts_in_intron	10606913	10606913	-	asmbl_39058	none	Trinity_GG_18860_c0_g1_i2	1	STRG.3497.1,blat.proc3829887.chain_3201	2
scaffold_2	alternate_exon	20312718	20312782	+	asmbl_25355	none	STRG.2875.1,Trinity_GG_1621_c0_g1_i2,blat.proc3829871.chain_3035	3	STRG.2875.3,STRG.2875.4,blat.proc3829871.chain_3036	3
scaffold_23	starts_in_intron	2628137	2628137	+	asmbl_30716	none	STRG.25710.2	1	STRG.25710.1,Trinity_GG_14194_c0_g1_i2,blat.proc3829883.chain_2621	3
scaffold_2	retained_intron	8874291	8874368	+	asmbl_24689,asmbl_24691,asmbl_24692	none	STRG.2139.1,blat.proc3829871.chain_2259,blat.proc3829871.chain_2260	3	STRG.2139.4	1
scaffold_17	alt_acceptor	12221211	12221212	-	asmbl_19368	none	STRG.20749.2	1	STRG.20749.1,blat.proc3829897.chain_1685	2
scaffold_9	ends_in_intron	14818625	14818625	-	asmbl_55458,asmbl_55465	none	STRG.11693.7,Trinity_GG_23432_c0_g1_i1,blat.proc3829893.chain_4	3	STRG.11693.1,STRG.11693.2,blat.proc3829893.chain_10,blat.proc3829893.chain_8	4
scaffold_15	spliced_intron	14678979	14679166	+	asmbl_14647	none	STRG.18871.2,Trinity_GG_10348_c0_g1_i1,blat.proc3829879.chain_3448	3	STRG.18871.1,Trinity_GG_10348_c0_g1_i2,blat.proc3829879.chain_3449	3
scaffold_17	spliced_intron	4267792	4267908	+	asmbl_17904	none	STRG.20166.1,blat.proc3829881.chain_1023	2	Trinity_GG_11076_c0_g1_i1,blat.proc3829881.chain_1022	2
scaffold_19	ends_in_intron	3561426	3561426	+	asmbl_22125,asmbl_22126	none	STRG.22033.3,blat.proc3829881.chain_2993	2	STRG.22033.1,STRG.22033.2,blat.proc3829881.chain_2992	3
scaffold_23	alt_donor	7678004	7678005	-	asmbl_31762	none	STRG.26059.2	1	STRG.26059.1	1
scaffold_14	alt_acceptor	3431537	3431538	-	asmbl_12994	none	STRG.16921.2	1	STRG.16921.1,blat.proc3829895.chain_1652	2
scaffold_1	ends_in_intron	20989617	20989617	+	asmbl_2658	none	STRG.1431.1	1	STRG.1431.2,Trinity_GG_838_c0_g1_i1,blat.proc3829871.chain_1499	3
scaffold_7	retained_intron	9312119	9312215	+	asmbl_50960	none	blat.proc3829875.chain_1610	1	STRG.9133.1,Trinity_GG_5081_c0_g1_i1,Trinity_GG_5081_c0_g1_i2,blat.proc3829875.chain_1611,blat.proc3829875.chain_1612	5
scaffold_6	alt_donor	14808312	14808313	-	asmbl_48971	none	STRG.8251.1	1	STRG.8251.2	1
scaffold_13	retained_intron	2340135	2340365	+	asmbl_10575,asmbl_10580,asmbl_10584	none	blat.proc3829879.chain_152,blat.proc3829879.chain_155,blat.proc3829879.chain_160	3	STRG.15543.10,STRG.15543.11,STRG.15543.3,STRG.15543.4,STRG.15543.6,STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_154,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_161,blat.proc3829879.chain_162,blat.proc3829879.chain_164	13
scaffold_12	alt_donor	4983043	4983044	+	asmbl_8586,asmbl_8590	none	STRG.14656.1,blat.proc3829877.chain_3082,blat.proc3829877.chain_3086	3	STRG.14656.2,Trinity_GG_8053_c0_g1_i3,blat.proc3829877.chain_3087,blat.proc3829877.chain_3088	4
scaffold_13	alternate_exon	9326794	9328370	-	asmbl_9978	none	blat.proc3829895.chain_959	1	STRG.16187.4	1
scaffold_9	starts_in_intron	11796219	11796219	-	asmbl_55272	none	blat.proc3829891.chain_3594	1	STRG.11484.1,STRG.11484.2,blat.proc3829891.chain_3590,blat.proc3829891.chain_3591,blat.proc3829891.chain_3593	5
scaffold_9	alt_donor	14819872	14819873	-	asmbl_55464	none	blat.proc3829893.chain_5	1	STRG.11693.1,STRG.11693.2,STRG.11693.7,blat.proc3829893.chain_10,blat.proc3829893.chain_8	5
scaffold_12	alt_acceptor	12843065	12843066	+	asmbl_8995	none	STRG.15165.1,blat.proc3829877.chain_3633	2	STRG.15165.2,blat.proc3829877.chain_3632	2
scaffold_7	starts_in_intron	17992012	17992012	+	asmbl_51397	none	blat.proc3829875.chain_2083	1	STRG.9629.1,STRG.9629.2,STRG.9629.3,blat.proc3829875.chain_2082	4
scaffold_15	spliced_intron	15189220	15189525	+	asmbl_14675,asmbl_14676,asmbl_14677,asmbl_14679,asmbl_14682,asmbl_14683,asmbl_14684,asmbl_14688,asmbl_14691	none	STRG.18906.1,STRG.18906.3,blat.proc3829879.chain_3471,blat.proc3829879.chain_3474,blat.proc3829879.chain_3475,blat.proc3829879.chain_3476,blat.proc3829879.chain_3479,blat.proc3829879.chain_3481,blat.proc3829879.chain_3482,blat.proc3829879.chain_3484	10	blat.proc3829879.chain_3472,blat.proc3829879.chain_3477,blat.proc3829879.chain_3478,blat.proc3829879.chain_3480,blat.proc3829879.chain_3485,blat.proc3829879.chain_3486	6
scaffold_17	starts_in_intron	11327932	11327932	+	asmbl_18339	none	Trinity_GG_11339_c0_g1_i1,blat.proc3829881.chain_1512	2	STRG.20671.1,blat.proc3829881.chain_1511	2
scaffold_8	spliced_intron	4083068	4083191	+	asmbl_51797,asmbl_51798	none	STRG.9885.1,STRG.9885.2,blat.proc3829875.chain_2411,blat.proc3829875.chain_2413	4	blat.proc3829875.chain_2410	1
scaffold_8	alt_acceptor	9643588	9643589	+	asmbl_52076,asmbl_52078,asmbl_52079,asmbl_52080,asmbl_52081	none	STRG.10210.1,STRG.10210.2,blat.proc3829875.chain_2728,blat.proc3829875.chain_2729,blat.proc3829875.chain_2730	5	STRG.10210.3	1
scaffold_9	alt_acceptor	13297182	13297183	-	asmbl_55381,asmbl_55383,asmbl_55385	none	STRG.11625.1,STRG.11625.2,STRG.11625.7	3	STRG.11625.3,STRG.11625.4,STRG.11625.5,STRG.11625.6	4
scaffold_2	starts_in_intron	5716687	5716687	+	asmbl_24458	none	STRG.1962.3	1	STRG.1962.1,STRG.1962.2,blat.proc3829871.chain_1938	3
scaffold_7	alternate_exon	15925213	15927840	-	asmbl_50211	none	STRG.9561.2	1	STRG.9561.3	1
scaffold_3	alternate_exon	6031481	6031739	-	asmbl_38842	none	blat.proc3829887.chain_3058	1	STRG.3255.1,STRG.3255.2,STRG.3255.3,STRG.3255.5,STRG.3255.7	5
scaffold_17	starts_in_intron	653837	653837	-	asmbl_18681	none	Trinity_GG_28182_c0_g1_i3,blat.proc3829897.chain_859	2	STRG.19899.1,Trinity_GG_28182_c0_g1_i1,Trinity_GG_28182_c0_g1_i2,blat.proc3829897.chain_860,blat.proc3829897.chain_861,blat.proc3829897.chain_862	6
scaffold_8	retained_exon	16401258	16401383	-	asmbl_53389,asmbl_53390,asmbl_53394,asmbl_53395,asmbl_53397,asmbl_53398	none	STRG.10619.1,STRG.10619.2,blat.proc3829891.chain_2683,blat.proc3829891.chain_2684,blat.proc3829891.chain_2686,blat.proc3829891.chain_2687,blat.proc3829891.chain_2689,blat.proc3829891.chain_2691	8	blat.proc3829891.chain_2685,blat.proc3829891.chain_2688	2
scaffold_13	spliced_intron	7217234	7217677	+	asmbl_11007,asmbl_11008,asmbl_11009,asmbl_11010	none	STRG.16002.1,blat.proc3829879.chain_695,blat.proc3829879.chain_696,blat.proc3829879.chain_698,blat.proc3829879.chain_701	5	blat.proc3829879.chain_693,blat.proc3829879.chain_700	2
scaffold_6	retained_intron	796568	796819	-	asmbl_48011,asmbl_48013	none	STRG.7133.2,STRG.7133.3,blat.proc3829889.chain_3126	3	STRG.7133.1,blat.proc3829889.chain_3127	2
scaffold_13	retained_intron	87817	88104	+	asmbl_10426,asmbl_10427	none	STRG.15412.1,STRG.15412.4,Trinity_GG_8476_c0_g2_i1,blat.proc3829879.chain_82	4	STRG.15412.3,blat.proc3829879.chain_80	2
scaffold_13	alternate_exon	7014565	7014695	-	asmbl_9791	none	STRG.15993.1,blat.proc3829895.chain_656	2	blat.proc3829895.chain_657	1
scaffold_8	starts_in_intron	13153229	13153229	-	asmbl_53281,asmbl_53283	none	blat.proc3829891.chain_2629,blat.proc3829891.chain_2631	2	blat.proc3829891.chain_2628,blat.proc3829891.chain_2630	2
scaffold_13	alt_acceptor	7192853	7192854	-	asmbl_9818,asmbl_9819,asmbl_9820,asmbl_9825,asmbl_9828	none	STRG.16001.1,STRG.16001.2,STRG.16001.3,blat.proc3829895.chain_839,blat.proc3829895.chain_840,blat.proc3829895.chain_841,blat.proc3829895.chain_843,blat.proc3829895.chain_844	8	STRG.16001.4,blat.proc3829895.chain_842	2
scaffold_10	spliced_intron	4715798	4715921	-	asmbl_3222	none	STRG.12286.1,blat.proc3829893.chain_750	2	STRG.12286.3	1
scaffold_15	skipped_exon	1961303	1961855	+	asmbl_13983	none	STRG.17971.1	1	STRG.17971.2	1
scaffold_4	starts_in_intron	6575027	6575027	+	asmbl_42742	none	Trinity_GG_2493_c0_g1_i2,blat.proc3829873.chain_856	2	STRG.4514.1,blat.proc3829873.chain_854,blat.proc3829873.chain_855	3
scaffold_22	retained_intron	322655	323437	+	asmbl_29134	none	STRG.24670.2	1	STRG.24670.1,blat.proc3829883.chain_1728,blat.proc3829883.chain_1731	3
scaffold_19	alt_acceptor	2922399	2922400	-	asmbl_21280	none	STRG.21968.2	1	STRG.21968.3	1
scaffold_18	retained_intron	835426	835527	-	asmbl_19635	none	blat.proc3829897.chain_1924	1	STRG.20998.3,blat.proc3829897.chain_1925,blat.proc3829897.chain_1926	3
scaffold_28	starts_in_intron	3735231	3735231	-	asmbl_37492,asmbl_37494	none	blat.proc3829901.chain_2659,blat.proc3829901.chain_2663	2	STRG.29558.1,STRG.29558.2,blat.proc3829901.chain_2661,blat.proc3829901.chain_2662	4
scaffold_10	alt_acceptor	1425930	1425931	+	asmbl_4214,asmbl_4218,asmbl_4221	none	STRG.12005.1,STRG.12005.4,STRG.12005.5,Trinity_GG_6688_c0_g1_i6,blat.proc3829877.chain_729,blat.proc3829877.chain_731	6	STRG.12005.3,Trinity_GG_6688_c0_g1_i4,blat.proc3829877.chain_728	3
scaffold_8	ends_in_intron	9281627	9281627	+	asmbl_52050	none	blat.proc3829875.chain_2676	1	STRG.10179.1,blat.proc3829875.chain_2674	2
scaffold_13	alt_acceptor	5382015	5382016	+	asmbl_10824	none	STRG.15819.1,blat.proc3829879.chain_506	2	STRG.15819.2	1
scaffold_3	alt_acceptor	12941544	12941545	-	asmbl_39194,asmbl_39195	none	STRG.3670.1,Trinity_GG_19027_c0_g1_i2,blat.proc3829887.chain_3444	3	STRG.3670.2	1
scaffold_3	alt_acceptor	18937872	18937873	+	asmbl_40707,asmbl_40708,asmbl_40709	none	STRG.4063.1,STRG.4063.2,STRG.4063.3	3	STRG.4063.4	1
scaffold_22	retained_exon	685622	685673	+	asmbl_29174	none	STRG.24704.1	1	Trinity_GG_13656_c0_g1_i1,blat.proc3829883.chain_1754	2
scaffold_19	spliced_intron	10121648	10121867	+	asmbl_22422	none	STRG.22382.1,blat.proc3829881.chain_3262	2	Trinity_GG_12345_c2_g1_i1,blat.proc3829881.chain_3264	2
scaffold_8	alt_acceptor	17362705	17362706	-	asmbl_53461	none	STRG.10649.2,blat.proc3829891.chain_2814	2	STRG.10649.1,blat.proc3829891.chain_2815	2
scaffold_14	spliced_intron	9475503	9475665	+	asmbl_12267	none	STRG.17325.2	1	STRG.17325.1,STRG.17325.3,Trinity_GG_9548_c0_g1_i1,Trinity_GG_9548_c0_g1_i2,blat.proc3829879.chain_2069,blat.proc3829879.chain_2070	6
scaffold_11	alternate_exon	11999663	11999789	-	asmbl_7039	none	STRG.14111.1,Trinity_GG_24898_c0_g1_i4	2	STRG.14111.4,Trinity_GG_24898_c0_g1_i1,blat.proc3829893.chain_2513	3
scaffold_6	alt_donor	11012000	11012001	-	asmbl_48667	none	STRG.7909.4	1	STRG.7909.2,STRG.7909.3,blat.proc3829891.chain_198	3
scaffold_27	starts_in_intron	2997707	2997707	+	asmbl_36110	none	STRG.28767.4	1	STRG.28767.1,STRG.28767.2,STRG.28767.3,Trinity_GG_15918_c0_g1_i12,blat.proc3829885.chain_1840,blat.proc3829885.chain_1842,blat.proc3829885.chain_1843,blat.proc3829885.chain_1845,blat.proc3829885.chain_1848,blat.proc3829885.chain_1849	10
scaffold_8	spliced_intron	16397567	16398401	-	asmbl_53389	none	STRG.10619.2,blat.proc3829891.chain_2687	2	STRG.10619.1,blat.proc3829891.chain_2684,blat.proc3829891.chain_2685,blat.proc3829891.chain_2686,blat.proc3829891.chain_2688,blat.proc3829891.chain_2689,blat.proc3829891.chain_2691	7
scaffold_13	alternate_exon	1527932	1530380	-	asmbl_9376,asmbl_9377,asmbl_9380	none	STRG.15500.1,STRG.15500.2,STRG.15500.3,Trinity_GG_25702_c0_g1_i5,blat.proc3829895.chain_260	5	Trinity_GG_25702_c0_g1_i1,blat.proc3829895.chain_262	2
scaffold_18	retained_intron	2394186	2394398	-	asmbl_19760	none	STRG.21108.2,Trinity_GG_28850_c0_g1_i4,blat.proc3829897.chain_2019,blat.proc3829897.chain_2020	4	STRG.21108.3,Trinity_GG_28850_c0_g1_i3,blat.proc3829897.chain_2017	3
scaffold_18	skipped_exon	4767150	4768831	+	asmbl_20591,asmbl_20593	none	STRG.21260.3,STRG.21260.5	2	STRG.21260.1,STRG.21260.2,Trinity_GG_11674_c0_g1_i1,blat.proc3829881.chain_2085,blat.proc3829881.chain_2087,blat.proc3829881.chain_2088	6
scaffold_16	alt_donor	7115652	7115653	-	asmbl_16340	none	STRG.19378.3	1	STRG.19378.2	1
scaffold_1	ends_in_intron	5738285	5738285	+	asmbl_1765	none	blat.proc3829871.chain_376	1	STRG.382.2,blat.proc3829871.chain_372,blat.proc3829871.chain_373	3
scaffold_1	alt_acceptor	11763225	11763226	+	asmbl_2131,asmbl_2132	none	STRG.795.2,STRG.795.3	2	STRG.795.1,blat.proc3829871.chain_892,blat.proc3829871.chain_893	3
scaffold_4	spliced_intron	17421974	17422122	-	asmbl_42012	none	blat.proc3829889.chain_1357	1	blat.proc3829889.chain_1356	1
scaffold_23	retained_exon	10701584	10701642	+	asmbl_31161	none	STRG.26237.1	1	STRG.26237.2	1
scaffold_1	starts_in_intron	12452907	12452907	+	asmbl_2212	none	blat.proc3829871.chain_950	1	STRG.857.1,STRG.857.2,blat.proc3829871.chain_947,blat.proc3829871.chain_949	4
scaffold_12	retained_intron	10190123	10190194	+	asmbl_8876	none	STRG.14976.1	1	STRG.14976.2	1
scaffold_25	retained_intron	1440381	1440581	+	asmbl_33366,asmbl_33367,asmbl_33371	none	STRG.27161.3,STRG.27161.4,Trinity_GG_14981_c0_g1_i1,blat.proc3829885.chain_226,blat.proc3829885.chain_227	5	STRG.27161.1	1
scaffold_12	alt_donor	3633542	3633543	+	asmbl_8522	none	STRG.14560.1,blat.proc3829877.chain_3014	2	STRG.14560.2	1
scaffold_13	starts_in_intron	14432910	14432910	+	asmbl_11436	none	Trinity_GG_9085_c1_g1_i1	1	STRG.16482.1	1
scaffold_4	alt_acceptor	12531836	12531837	-	asmbl_41662	none	STRG.4887.2	1	STRG.4887.1,Trinity_GG_19696_c0_g1_i3,blat.proc3829889.chain_881	3
scaffold_24	alt_acceptor	3656568	3656569	+	asmbl_32164	none	STRG.26528.4,Trinity_GG_14654_c0_g1_i3,blat.proc3829883.chain_3406	3	STRG.26528.1,STRG.26528.2,STRG.26528.3,STRG.26528.6,Trinity_GG_14654_c0_g1_i10,Trinity_GG_14654_c0_g1_i7,blat.proc3829883.chain_3402,blat.proc3829883.chain_3403,blat.proc3829883.chain_3404,blat.proc3829883.chain_3405,blat.proc3829883.chain_3407,blat.proc3829883.chain_3408	12
scaffold_17	retained_intron	8318341	8318617	+	asmbl_18101	none	blat.proc3829881.chain_1249	1	blat.proc3829881.chain_1250,blat.proc3829881.chain_1251,blat.proc3829881.chain_1253	3
scaffold_3	retained_exon	13161342	13161453	+	asmbl_40378,asmbl_40379,asmbl_40380,asmbl_40384	none	STRG.3678.1,STRG.3678.2,STRG.3678.3,blat.proc3829873.chain_36,blat.proc3829873.chain_37,blat.proc3829873.chain_39	6	STRG.3678.4	1
scaffold_1	starts_in_intron	7174721	7174721	+	asmbl_1882	none	blat.proc3829871.chain_574	1	STRG.509.1,blat.proc3829871.chain_573	2
scaffold_20	alt_donor	1876050	1876051	-	asmbl_26543	none	blat.proc3829883.chain_53	1	STRG.22909.1	1
scaffold_16	alt_acceptor	787928	787929	+	asmbl_16835,asmbl_16837,asmbl_16839	none	STRG.19046.1,STRG.19046.2,blat.proc3829879.chain_3591,blat.proc3829879.chain_3592,blat.proc3829879.chain_3593	5	STRG.19046.3,blat.proc3829879.chain_3589,blat.proc3829879.chain_3590	3
scaffold_22	spliced_intron	1706545	1706810	-	asmbl_29910,asmbl_29911	none	STRG.24746.1,STRG.24746.2,Trinity_GG_30839_c0_g1_i1,Trinity_GG_30839_c0_g1_i3,blat.proc3829899.chain_1868,blat.proc3829899.chain_1870	6	blat.proc3829899.chain_1869	1
scaffold_14	spliced_intron	11391513	11391625	-	asmbl_13460	none	STRG.17457.2,Trinity_GG_26751_c0_g1_i5,blat.proc3829895.chain_2097	3	STRG.17457.1,STRG.17457.3,STRG.17457.4,blat.proc3829895.chain_2095,blat.proc3829895.chain_2096,blat.proc3829895.chain_2098	6
scaffold_3	alt_acceptor	7917825	7917826	-	asmbl_38950	none	STRG.3375.3	1	STRG.3375.1,STRG.3375.2,STRG.3375.4,STRG.3375.5,blat.proc3829887.chain_3073,blat.proc3829887.chain_3074	6
scaffold_17	spliced_intron	8848586	8849302	+	asmbl_18156	none	STRG.20482.2	1	STRG.20482.1,Trinity_GG_11229_c0_g1_i2	2
scaffold_24	starts_in_intron	10604288	10604288	+	asmbl_32582,asmbl_32584	none	STRG.27008.2,blat.proc3829885.chain_139,blat.proc3829885.chain_140	3	STRG.27008.1,blat.proc3829885.chain_141,blat.proc3829885.chain_142	3
scaffold_17	ends_in_intron	12218351	12218351	-	asmbl_19366	none	Trinity_GG_28673_c0_g1_i2,blat.proc3829897.chain_1682	2	STRG.20748.1,blat.proc3829897.chain_1683	2
scaffold_19	alt_donor	11475392	11475393	-	asmbl_21607,asmbl_21608	none	STRG.22467.2,STRG.22467.3	2	STRG.22467.1	1
scaffold_7	retained_intron	6655482	6656656	-	asmbl_49743	none	STRG.8934.2,Trinity_GG_22098_c0_g1_i3,blat.proc3829891.chain_1262	3	STRG.8934.1,blat.proc3829891.chain_1261,blat.proc3829891.chain_1263	3
scaffold_11	starts_in_intron	16530687	16530687	+	asmbl_6141	none	blat.proc3829877.chain_2815	1	STRG.14333.1,STRG.14333.2,blat.proc3829877.chain_2816	3
scaffold_5	spliced_intron	15044005	15044118	-	asmbl_46016,asmbl_46018	none	STRG.6692.7,STRG.6692.8	2	STRG.6692.4	1
scaffold_26	starts_in_intron	9044898	9044898	+	asmbl_35726	none	Trinity_GG_15751_c0_g2_i1,blat.proc3829885.chain_1496	2	STRG.28452.1,STRG.28452.2,Trinity_GG_15751_c0_g1_i1,Trinity_GG_15751_c0_g1_i2,blat.proc3829885.chain_1494,blat.proc3829885.chain_1495	6
scaffold_6	ends_in_intron	12028782	12028782	-	asmbl_48712	none	Trinity_GG_21536_c0_g1_i3,blat.proc3829891.chain_238	2	STRG.7972.1,blat.proc3829891.chain_237,blat.proc3829891.chain_239	3
scaffold_6	ends_in_intron	9601829	9601829	+	asmbl_47169	none	blat.proc3829875.chain_176	1	STRG.7803.1,blat.proc3829875.chain_174	2
scaffold_12	alternate_exon	12387161	12387314	+	asmbl_8963	none	STRG.15133.1,blat.proc3829877.chain_3615	2	STRG.15133.2,blat.proc3829877.chain_3614	2
scaffold_17	retained_intron	4186382	4186960	-	asmbl_18887	none	STRG.20157.2,blat.proc3829897.chain_1125	2	STRG.20157.1,blat.proc3829897.chain_1126	2
scaffold_4	skipped_exon	13076162	13076428	+	asmbl_43111,asmbl_43112	none	STRG.4945.5,blat.proc3829873.chain_1240	2	STRG.4945.1,STRG.4945.2,STRG.4945.3,blat.proc3829873.chain_1237,blat.proc3829873.chain_1238	5
scaffold_19	spliced_intron	1039595	1040154	-	asmbl_21218	none	STRG.21880.2	1	STRG.21880.1	1
scaffold_16	starts_in_intron	8646364	8646364	+	asmbl_17240	none	STRG.19480.3	1	STRG.19480.1,blat.proc3829881.chain_373,blat.proc3829881.chain_374,blat.proc3829881.chain_376	4
scaffold_18	retained_intron	6425925	6426952	+	asmbl_20706	none	STRG.21358.2,Trinity_GG_11798_c0_g1_i2,blat.proc3829881.chain_2336	3	STRG.21358.1,Trinity_GG_11798_c0_g1_i1,blat.proc3829881.chain_2335	3
scaffold_5	starts_in_intron	10381149	10381149	-	asmbl_45736	none	blat.proc3829889.chain_2439	1	STRG.6330.1,STRG.6330.2,STRG.6330.3,blat.proc3829889.chain_2440,blat.proc3829889.chain_2441	5
scaffold_2	starts_in_intron	15269260	15269260	+	asmbl_25039	none	blat.proc3829871.chain_2534	1	STRG.2481.1,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2529,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2536,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	9
scaffold_2	alt_acceptor	16291996	16291997	+	asmbl_25147	none	Trinity_GG_1458_c0_g1_i3,blat.proc3829871.chain_2766	2	STRG.2561.1,STRG.2561.2,blat.proc3829871.chain_2768,blat.proc3829871.chain_2769	4
scaffold_1	alt_acceptor	18029312	18029313	-	asmbl_1075	none	blat.proc3829871.chain_1253	1	STRG.1264.4	1
scaffold_11	alt_acceptor	10981968	10981969	-	asmbl_6989	none	STRG.14049.2	1	STRG.14049.3	1
scaffold_21	starts_in_intron	2475472	2475472	-	asmbl_27488	none	blat.proc3829899.chain_905	1	STRG.23863.1,STRG.23863.4,blat.proc3829899.chain_899,blat.proc3829899.chain_902,blat.proc3829899.chain_904,blat.proc3829899.chain_906	6
scaffold_23	alt_acceptor	1136489	1136490	-	asmbl_31347,asmbl_31349	none	STRG.25575.2,blat.proc3829899.chain_2600	2	STRG.25575.1,blat.proc3829899.chain_2599,blat.proc3829899.chain_2601,blat.proc3829899.chain_2603	4
scaffold_11	starts_in_intron	4673035	4673035	-	asmbl_6589	none	Trinity_GG_24574_c0_g1_i1,blat.proc3829893.chain_1974	2	STRG.13547.1,STRG.13547.4,blat.proc3829893.chain_1973	3
scaffold_8	starts_in_intron	3106076	3106076	-	asmbl_52722,asmbl_52724	none	STRG.9818.2,blat.proc3829891.chain_2001	2	STRG.9818.1,blat.proc3829891.chain_2002,blat.proc3829891.chain_2003	3
scaffold_23	retained_intron	7281701	7281808	-	asmbl_31740	none	STRG.26034.1,blat.proc3829899.chain_3127	2	STRG.26034.2	1
scaffold_18	skipped_exon	1512768	1513566	+	asmbl_20383	none	STRG.21033.1,blat.proc3829881.chain_1931	2	STRG.21033.3	1
scaffold_12	retained_exon	12288533	12288574	-	asmbl_7985,asmbl_7989	none	STRG.15114.3,STRG.15114.4	2	STRG.15114.5	1
scaffold_3	starts_in_intron	17114327	17114327	+	asmbl_40604,asmbl_40605	none	STRG.3957.6,STRG.3957.7,Trinity_GG_2203_c5_g1_i1	3	STRG.3957.1,STRG.3957.2,STRG.3957.3,STRG.3957.4	4
scaffold_5	retained_intron	2234179	2234653	-	asmbl_45267	none	STRG.5750.1,Trinity_GG_20251_c0_g1_i5,blat.proc3829889.chain_1844,blat.proc3829889.chain_1845	4	STRG.5750.2,blat.proc3829889.chain_1846	2
scaffold_17	starts_in_intron	1519276	1519276	-	asmbl_18770	none	blat.proc3829897.chain_966	1	STRG.19978.1,blat.proc3829897.chain_965	2
scaffold_4	spliced_intron	18033877	18033924	-	asmbl_42092	none	STRG.5403.1	1	STRG.5403.2	1
scaffold_5	alternate_exon	5511134	5511283	+	asmbl_44012	none	STRG.5969.3	1	STRG.5969.1,blat.proc3829873.chain_2122	2
scaffold_13	ends_in_intron	16367287	16367287	-	asmbl_10271	none	blat.proc3829895.chain_1297	1	STRG.16680.1,STRG.16680.2,blat.proc3829895.chain_1298	3
scaffold_5	ends_in_intron	9704907	9704907	-	asmbl_45681	none	blat.proc3829889.chain_2377	1	STRG.6283.2,blat.proc3829889.chain_2369,blat.proc3829889.chain_2370,blat.proc3829889.chain_2373,blat.proc3829889.chain_2376	5
scaffold_17	spliced_intron	2566428	2566633	+	asmbl_17792,asmbl_17795	none	STRG.20039.1,STRG.20039.2,blat.proc3829881.chain_840	3	Trinity_GG_10964_c0_g1_i5,blat.proc3829881.chain_841	2
scaffold_10	retained_intron	8897211	8897475	-	asmbl_3538	none	blat.proc3829893.chain_1135	1	blat.proc3829893.chain_1125	1
scaffold_2	retained_intron	3899965	3900066	+	asmbl_24342	none	blat.proc3829871.chain_1840	1	STRG.1831.1,STRG.1831.2,STRG.1831.3,blat.proc3829871.chain_1839,blat.proc3829871.chain_1842,blat.proc3829871.chain_1843	6
scaffold_13	starts_in_intron	4242577	4242577	-	asmbl_9579	none	blat.proc3829895.chain_476	1	STRG.15737.1,STRG.15737.2,STRG.15737.3,STRG.15737.4,STRG.15737.5,blat.proc3829895.chain_477,blat.proc3829895.chain_478,blat.proc3829895.chain_479,blat.proc3829895.chain_480	9
scaffold_8	starts_in_intron	6118016	6118016	+	asmbl_51925	none	Trinity_GG_5582_c0_g2_i1,blat.proc3829875.chain_2528	2	STRG.10007.1,STRG.10007.2,Trinity_GG_5582_c0_g1_i7,blat.proc3829875.chain_2524,blat.proc3829875.chain_2527	5
scaffold_5	skipped_exon	15894091	15896094	+	asmbl_44687,asmbl_44690	none	STRG.6770.1,STRG.6770.3,blat.proc3829873.chain_2800	3	STRG.6770.2,blat.proc3829873.chain_2801	2
scaffold_13	ends_in_intron	5921848	5921848	-	asmbl_9711	none	Trinity_GG_25942_c0_g1_i1,blat.proc3829895.chain_650	2	STRG.15892.1,STRG.15892.2,Trinity_GG_25942_c0_g1_i2,Trinity_GG_25942_c0_g1_i3,blat.proc3829895.chain_648,blat.proc3829895.chain_649	6
scaffold_22	alt_acceptor	474170	474171	+	asmbl_29144	none	STRG.24677.1,Trinity_GG_13636_c1_g1_i1,blat.proc3829883.chain_1712	3	STRG.24677.2	1
scaffold_2	spliced_intron	16288201	16288293	+	asmbl_25137,asmbl_25138,asmbl_25141,asmbl_25142	none	STRG.2560.1,STRG.2560.2,blat.proc3829871.chain_2750,blat.proc3829871.chain_2752	4	blat.proc3829871.chain_2751	1
scaffold_27	retained_exon	1774784	1775049	+	asmbl_35997	none	STRG.28648.2	1	STRG.28648.1,Trinity_GG_15863_c0_g1_i1,Trinity_GG_15863_c0_g1_i2	3
scaffold_7	spliced_intron	8296258	8297094	-	asmbl_49808	none	STRG.9056.1,blat.proc3829891.chain_1235	2	STRG.9056.3,Trinity_GG_22080_c0_g1_i2,blat.proc3829891.chain_1236	3
scaffold_4	ends_in_intron	5376360	5376360	-	asmbl_41338	none	STRG.4430.1,blat.proc3829889.chain_557	2	blat.proc3829889.chain_558	1
scaffold_16	ends_in_intron	4879654	4879654	-	asmbl_16251	none	Trinity_GG_27802_c0_g1_i3,blat.proc3829897.chain_246	2	STRG.19250.1	1
scaffold_7	alt_donor	15647495	15647496	+	asmbl_51336	none	STRG.9551.2,blat.proc3829875.chain_2030	2	STRG.9551.1,STRG.9551.3,blat.proc3829875.chain_2033	3
scaffold_17	alternate_exon	2535061	2535563	-	asmbl_18805	none	blat.proc3829897.chain_988	1	STRG.20035.1,STRG.20035.2,blat.proc3829897.chain_984,blat.proc3829897.chain_985,blat.proc3829897.chain_987	5
scaffold_15	ends_in_intron	15919475	15919475	+	asmbl_14799	none	STRG.18967.4	1	STRG.18967.1,STRG.18967.2,STRG.18967.3,Trinity_GG_10379_c1_g1_i1,Trinity_GG_10379_c1_g1_i2,blat.proc3829879.chain_3526,blat.proc3829879.chain_3527	7
scaffold_5	alt_acceptor	18696880	18696881	-	asmbl_46228,asmbl_46230	none	STRG.6987.2,STRG.6987.3	2	STRG.6987.1	1
scaffold_15	alt_acceptor	3695257	3695258	-	asmbl_15118	none	STRG.18132.2	1	STRG.18132.3	1
scaffold_11	ends_in_intron	14585496	14585496	+	asmbl_6075	none	blat.proc3829877.chain_2757	1	STRG.14246.1,STRG.14246.2,STRG.14246.3,blat.proc3829877.chain_2756	4
scaffold_2	spliced_intron	19140192	19140304	+	asmbl_25300	none	STRG.2781.2,blat.proc3829871.chain_2933	2	STRG.2781.1,Trinity_GG_1556_c0_g1_i2,blat.proc3829871.chain_2934	3
scaffold_27	retained_intron	4755122	4755207	+	asmbl_36271	none	Trinity_GG_16015_c0_g1_i4	1	STRG.28892.1	1
scaffold_2	retained_exon	17015759	17016188	-	asmbl_23721	none	STRG.2611.1,blat.proc3829887.chain_2416	2	STRG.2611.2,STRG.2611.3,blat.proc3829887.chain_2414	3
scaffold_8	starts_in_intron	16267935	16267935	+	asmbl_52435	none	blat.proc3829875.chain_3110	1	STRG.10608.1,blat.proc3829875.chain_3108	2
scaffold_25	spliced_intron	6311974	6313061	-	asmbl_34323	none	STRG.27517.2,blat.proc3829901.chain_827	2	Trinity_GG_32432_c0_g1_i4,blat.proc3829901.chain_826	2
scaffold_3	retained_intron	18347139	18347225	-	asmbl_39561	none	blat.proc3829873.chain_417	1	STRG.4038.1,blat.proc3829889.chain_77	2
scaffold_9	alt_acceptor	5567334	5567335	-	asmbl_54980	none	STRG.11115.2	1	STRG.11115.1	1
scaffold_7	alt_acceptor	18392890	18392891	-	asmbl_50289,asmbl_50293,asmbl_50294,asmbl_50295	none	STRG.9659.3,Trinity_GG_22427_c0_g1_i11,Trinity_GG_22427_c0_g1_i5,blat.proc3829891.chain_1867,blat.proc3829891.chain_1868,blat.proc3829891.chain_1875	6	STRG.9659.1,STRG.9659.2,STRG.9659.4,STRG.9659.5,Trinity_GG_22427_c0_g1_i10,Trinity_GG_22427_c0_g1_i15,blat.proc3829891.chain_1869,blat.proc3829891.chain_1870,blat.proc3829891.chain_1871,blat.proc3829891.chain_1873,blat.proc3829891.chain_1874	11
scaffold_2	retained_exon	801890	801955	+	asmbl_24127	none	Trinity_GG_875_c1_g1_i1,blat.proc3829871.chain_1575,blat.proc3829871.chain_1576	3	STRG.1558.1	1
scaffold_16	retained_intron	5394585	5394936	+	asmbl_17007	none	blat.proc3829881.chain_136	1	STRG.19275.1,STRG.19275.2,Trinity_GG_10554_c0_g1_i2,blat.proc3829881.chain_135,blat.proc3829881.chain_137	5
scaffold_5	spliced_intron	14680454	14680588	+	asmbl_44622	none	STRG.6663.1,Trinity_GG_3607_c0_g1_i4,blat.proc3829873.chain_2739	3	Trinity_GG_3607_c0_g1_i2,blat.proc3829873.chain_2738	2
scaffold_18	spliced_intron	282012	282108	+	asmbl_20312	none	STRG.20973.3	1	STRG.20973.2	1
scaffold_7	alt_donor	11412972	11412973	+	asmbl_51054	none	STRG.9275.2,blat.proc3829875.chain_1665	2	STRG.9275.1,Trinity_GG_5112_c0_g1_i4,blat.proc3829875.chain_1662,blat.proc3829875.chain_1664	4
scaffold_26	starts_in_intron	4408782	4408782	-	asmbl_34826	none	blat.proc3829901.chain_1285	1	STRG.28130.1,blat.proc3829901.chain_1284,blat.proc3829901.chain_1286	3
scaffold_2	spliced_intron	7895028	7895182	+	asmbl_24629	none	Trinity_GG_1187_c0_g1_i17,blat.proc3829871.chain_2198	2	Trinity_GG_1187_c0_g1_i12,blat.proc3829871.chain_2190	2
scaffold_3	retained_intron	15573354	15573483	+	asmbl_40532,asmbl_40533,asmbl_40534	none	STRG.3845.4,blat.proc3829873.chain_217,blat.proc3829873.chain_219	3	STRG.3845.1,STRG.3845.3,blat.proc3829873.chain_216,blat.proc3829873.chain_218	4
scaffold_19	skipped_exon	12255741	12257781	+	asmbl_22579	none	STRG.22539.1,blat.proc3829881.chain_3432	2	STRG.22539.2	1
scaffold_6	retained_exon	886163	886307	-	asmbl_48031	none	STRG.7153.3	1	STRG.7153.2	1
scaffold_17	alternate_exon	13171915	13173795	-	asmbl_19401	none	STRG.20795.1,blat.proc3829897.chain_1725	2	Trinity_GG_28701_c0_g1_i1,blat.proc3829897.chain_1726	2
scaffold_2	alt_donor	9300477	9300478	-	asmbl_23391	none	STRG.2178.2,Trinity_GG_18238_c0_g1_i1,blat.proc3829887.chain_2093	3	STRG.2178.1,Trinity_GG_18238_c0_g1_i2,blat.proc3829887.chain_2094	3
scaffold_7	alt_acceptor	12271071	12271072	+	asmbl_51111	none	STRG.9313.4,Trinity_GG_5141_c0_g1_i5,Trinity_GG_5141_c0_g1_i6,blat.proc3829875.chain_1712	4	STRG.9313.2,STRG.9313.3,STRG.9313.5,Trinity_GG_5141_c0_g1_i1,Trinity_GG_5141_c0_g1_i2,blat.proc3829875.chain_1714	6
scaffold_8	retained_exon	4665199	4665258	-	asmbl_52776	none	STRG.9919.1,blat.proc3829891.chain_2074	2	blat.proc3829891.chain_2073	1
scaffold_1	alternate_exon	22369668	22371479	+	asmbl_2676,asmbl_2680	none	STRG.1490.2,STRG.1490.4	2	STRG.1490.6	1
scaffold_10	alt_donor	6078827	6078828	-	asmbl_3348,asmbl_3350	none	STRG.12437.1,blat.proc3829893.chain_921	2	blat.proc3829893.chain_919	1
scaffold_17	retained_intron	5711015	5711316	-	asmbl_18988,asmbl_18991	none	STRG.20262.2,blat.proc3829897.chain_1234,blat.proc3829897.chain_1237	3	STRG.20262.1,blat.proc3829897.chain_1235,blat.proc3829897.chain_1236	3
scaffold_16	alt_donor	3706098	3706099	+	asmbl_16936,asmbl_16938	none	STRG.19166.1,blat.proc3829881.chain_34,blat.proc3829881.chain_36	3	STRG.19166.2,blat.proc3829881.chain_35	2
scaffold_6	retained_intron	3056924	3057109	+	asmbl_46745,asmbl_46749	none	blat.proc3829873.chain_3439,blat.proc3829873.chain_3443	2	STRG.7308.1,STRG.7308.2,blat.proc3829873.chain_3438,blat.proc3829873.chain_3440,blat.proc3829873.chain_3442,blat.proc3829873.chain_3444,blat.proc3829873.chain_3445,blat.proc3829873.chain_3446	8
scaffold_18	spliced_intron	6423799	6424289	+	asmbl_20707	none	STRG.21358.1,blat.proc3829897.chain_2221	2	STRG.21358.2,Trinity_GG_11792_c1_g1_i1,blat.proc3829881.chain_2320,blat.proc3829881.chain_2323	4
scaffold_23	spliced_intron	7686045	7687381	+	asmbl_31008,asmbl_31010,asmbl_31015	none	STRG.26063.1,STRG.26063.6,Trinity_GG_14406_c0_g1_i3,Trinity_GG_14406_c0_g1_i6,blat.proc3829883.chain_2977,blat.proc3829883.chain_2981	6	Trinity_GG_14406_c0_g1_i5,blat.proc3829883.chain_2976	2
scaffold_2	alternate_exon	7479635	7480026	-	asmbl_23292	none	STRG.2067.1,blat.proc3829887.chain_1959	2	STRG.2067.2,blat.proc3829887.chain_1960	2
scaffold_22	alt_donor	7898409	7898410	-	asmbl_30203	none	STRG.25124.1	1	STRG.25124.2,blat.proc3829899.chain_2228	2
scaffold_13	alt_donor	7109446	7109447	+	asmbl_11000	none	STRG.15994.2	1	STRG.15994.3,Trinity_GG_8796_c0_g1_i10,blat.proc3829879.chain_729	3
scaffold_19	alt_donor	858189	858190	+	asmbl_22020	none	STRG.21868.2,blat.proc3829881.chain_2794	2	blat.proc3829881.chain_2793	1
scaffold_17	alt_acceptor	939920	939921	+	asmbl_17706,asmbl_17708	none	STRG.19921.1,STRG.19921.3,blat.proc3829881.chain_773	3	STRG.19921.2,blat.proc3829881.chain_772	2
scaffold_23	alt_acceptor	7001775	7001776	-	asmbl_31725	none	STRG.26005.1,blat.proc3829899.chain_3112	2	STRG.26005.2,Trinity_GG_31556_c0_g1_i2,blat.proc3829899.chain_3111	3
scaffold_6	starts_in_intron	12006847	12006847	+	asmbl_47305	none	Trinity_GG_4306_c0_g1_i4,blat.proc3829875.chain_235	2	STRG.7963.1	1
scaffold_1	starts_in_intron	16714476	16714476	-	asmbl_1013	none	Trinity_GG_17629_c0_g2_i1,blat.proc3829887.chain_1052	2	STRG.1175.2,STRG.1175.3,STRG.1175.4,STRG.1175.5,STRG.1175.6,blat.proc3829887.chain_1050,blat.proc3829887.chain_1051	7
scaffold_1	skipped_exon	3285767	3287307	+	asmbl_1588	none	STRG.204.1	1	blat.proc3829871.chain_252	1
scaffold_18	starts_in_intron	7241578	7241578	+	asmbl_20759	none	Trinity_GG_11830_c1_g1_i1,blat.proc3829881.chain_2386	2	STRG.21440.1,blat.proc3829881.chain_2384	2
scaffold_26	retained_intron	5524354	5524425	+	asmbl_35541	none	STRG.28244.1	1	STRG.28244.4	1
scaffold_18	retained_exon	1887353	1887391	-	asmbl_19694,asmbl_19696,asmbl_19698,asmbl_19703	none	STRG.21072.1,blat.proc3829897.chain_1890,blat.proc3829897.chain_1895,blat.proc3829897.chain_1897	4	STRG.21072.2,STRG.21072.3,STRG.21072.4,STRG.21072.6,blat.proc3829897.chain_1893	5
scaffold_11	retained_intron	8192814	8192909	-	asmbl_6834	none	Trinity_GG_24748_c0_g1_i2,blat.proc3829893.chain_2273	2	STRG.13814.2,Trinity_GG_24748_c0_g1_i1,blat.proc3829893.chain_2275	3
scaffold_4	alt_donor	18291787	18291788	+	asmbl_43438	none	STRG.5424.6	1	STRG.5424.1,STRG.5424.2,STRG.5424.3,STRG.5424.4,STRG.5424.5,blat.proc3829873.chain_1664,blat.proc3829873.chain_1665,blat.proc3829873.chain_1666	8
scaffold_22	starts_in_intron	6122473	6122473	-	asmbl_30075	none	blat.proc3829899.chain_2061	1	STRG.24954.2	1
scaffold_15	alt_donor	14633890	14633891	-	asmbl_15749,asmbl_15753	none	STRG.18867.1,STRG.18867.4,blat.proc3829895.chain_3645	3	STRG.18867.2,blat.proc3829895.chain_3644	2
scaffold_10	alt_donor	14839146	14839147	-	asmbl_3865	none	STRG.13020.1,blat.proc3829893.chain_1482	2	blat.proc3829893.chain_1483	1
scaffold_21	retained_intron	5171404	5171760	-	asmbl_27650	none	blat.proc3829899.chain_1132	1	STRG.24038.1,blat.proc3829899.chain_1128,blat.proc3829899.chain_1129,blat.proc3829899.chain_1134	4
scaffold_18	alt_donor	13150281	13150282	-	asmbl_20193	none	STRG.21746.3	1	STRG.21746.1	1
scaffold_17	starts_in_intron	9594039	9594039	-	asmbl_19230	none	Trinity_GG_28580_c0_g1_i1,blat.proc3829897.chain_1517	2	STRG.20568.2,STRG.20568.3,blat.proc3829897.chain_1518	3
scaffold_3	skipped_exon	8998706	8999961	-	asmbl_39001,asmbl_39005	none	blat.proc3829887.chain_3227,blat.proc3829887.chain_3230,blat.proc3829887.chain_3231	3	STRG.3425.1,STRG.3425.2	2
scaffold_11	retained_intron	9680424	9680534	-	asmbl_6929	none	STRG.13973.2,blat.proc3829893.chain_2400	2	STRG.13973.1,blat.proc3829893.chain_2399	2
scaffold_2	alt_acceptor	14480292	14480293	-	asmbl_23619	none	STRG.2448.1,blat.proc3829887.chain_2328	2	STRG.2448.2	1
scaffold_17	starts_in_intron	14081907	14081907	+	asmbl_18502	none	blat.proc3829881.chain_1727	1	STRG.20872.1,blat.proc3829881.chain_1728	2
scaffold_13	alt_donor	6951095	6951096	-	asmbl_9779	none	STRG.15968.4	1	STRG.15968.2,STRG.15968.3,STRG.15968.5,STRG.15968.6	4
scaffold_13	spliced_intron	4803	5026	+	asmbl_10415	none	STRG.15408.2,Trinity_GG_8474_c0_g1_i4,blat.proc3829879.chain_74	3	STRG.15408.1,STRG.15408.3,Trinity_GG_8474_c0_g1_i1,Trinity_GG_8474_c0_g1_i2,Trinity_GG_8474_c0_g1_i6,Trinity_GG_8474_c0_g1_i7,Trinity_GG_8474_c0_g1_i8,blat.proc3829879.chain_71,blat.proc3829879.chain_72,blat.proc3829879.chain_75,blat.proc3829879.chain_76,blat.proc3829879.chain_78	12
scaffold_4	ends_in_intron	5198837	5198837	+	asmbl_42670	none	blat.proc3829873.chain_785	1	STRG.4409.1,blat.proc3829873.chain_786	2
scaffold_26	alt_acceptor	9774173	9774174	+	asmbl_35780	none	STRG.28501.4	1	blat.proc3829885.chain_1535	1
scaffold_1	spliced_intron	11678500	11678600	+	asmbl_2111	none	STRG.776.1	1	blat.proc3829871.chain_832	1
scaffold_5	spliced_intron	6853682	6853716	-	asmbl_45539	none	STRG.6091.2	1	STRG.6091.1	1
scaffold_433	spliced_intron	4666	4794	-	asmbl_43678	none	STRG.30302.1	1	STRG.30302.2	1
scaffold_20	spliced_intron	1614927	1615776	-	asmbl_26521	none	STRG.22881.4	1	STRG.22881.1,STRG.22881.2,STRG.22881.3,Trinity_GG_29752_c0_g1_i1,Trinity_GG_29752_c2_g1_i1,blat.proc3829897.chain_3611,blat.proc3829897.chain_3613	7
scaffold_25	retained_intron	6311974	6313061	-	asmbl_34322	none	Trinity_GG_32432_c0_g1_i4,blat.proc3829901.chain_826	2	STRG.27517.2,blat.proc3829901.chain_827	2
scaffold_4	alt_donor	9716055	9716056	-	asmbl_41560	none	STRG.4738.1,blat.proc3829889.chain_818	2	STRG.4738.2,blat.proc3829889.chain_817	2
scaffold_1	starts_in_intron	1722449	1722449	+	asmbl_1502	none	blat.proc3829871.chain_140	1	STRG.103.1,blat.proc3829871.chain_139	2
scaffold_3	alternate_exon	6077915	6078434	-	asmbl_38850	none	Trinity_GG_18797_c0_g1_i4,blat.proc3829887.chain_3024	2	STRG.3254.1,blat.proc3829887.chain_3026	2
scaffold_4	retained_intron	232495	232641	-	asmbl_41058	none	STRG.4116.1,Trinity_GG_19305_c0_g1_i1,blat.proc3829889.chain_229	3	STRG.4116.2	1
scaffold_19	retained_intron	8258058	8258133	+	asmbl_22312	none	blat.proc3829881.chain_3182	1	STRG.22271.1,blat.proc3829881.chain_3183	2
scaffold_4	retained_intron	4451696	4451771	+	asmbl_42606	none	STRG.4350.2,blat.proc3829873.chain_763	2	STRG.4350.1	1
scaffold_18	spliced_intron	1382022	1382102	-	asmbl_19647,asmbl_19648	none	STRG.21013.1,STRG.21013.2,blat.proc3829897.chain_1921,blat.proc3829897.chain_1922	4	blat.proc3829897.chain_1923	1
scaffold_5	spliced_intron	4949952	4950472	+	asmbl_43984,asmbl_43985,asmbl_43986	none	STRG.5946.1,STRG.5946.3,Trinity_GG_3271_c0_g1_i1,blat.proc3829873.chain_2130	4	STRG.5946.2,Trinity_GG_3271_c1_g1_i1,blat.proc3829873.chain_2131	3
scaffold_22	starts_in_intron	8172567	8172567	-	asmbl_30220	none	blat.proc3829899.chain_2176	1	STRG.25150.1,blat.proc3829899.chain_2177	2
scaffold_7	spliced_intron	12452785	12453235	-	asmbl_50036,asmbl_50037,asmbl_50038,asmbl_50041,asmbl_50045	none	STRG.9342.1,Trinity_GG_22282_c1_g1_i7,Trinity_GG_22282_c1_g1_i9,blat.proc3829891.chain_1604,blat.proc3829891.chain_1606,blat.proc3829891.chain_1607,blat.proc3829891.chain_1614	7	STRG.9342.2,blat.proc3829891.chain_1605,blat.proc3829891.chain_1608,blat.proc3829891.chain_1611	4
scaffold_25	skipped_exon	4332946	4335709	-	asmbl_34165	none	STRG.27343.1,blat.proc3829901.chain_655	2	STRG.27343.2,blat.proc3829901.chain_654	2
scaffold_15	retained_intron	13944525	13944639	-	asmbl_15699,asmbl_15702	none	STRG.18816.1,blat.proc3829895.chain_3542,blat.proc3829895.chain_3545	3	STRG.18816.4,blat.proc3829895.chain_3544,blat.proc3829895.chain_3546	3
scaffold_17	spliced_intron	2685101	2685190	+	asmbl_17809,asmbl_17810,asmbl_17812,asmbl_17813	none	STRG.20051.1,STRG.20051.2,blat.proc3829881.chain_881,blat.proc3829881.chain_882,blat.proc3829881.chain_883,blat.proc3829881.chain_884	6	Trinity_GG_10983_c0_g1_i1,blat.proc3829881.chain_880	2
scaffold_13	starts_in_intron	2873190	2873190	-	asmbl_9446	none	blat.proc3829895.chain_344	1	STRG.15576.1,blat.proc3829895.chain_345,blat.proc3829895.chain_347	3
scaffold_2	retained_exon	14273093	14273221	+	asmbl_24928,asmbl_24933	none	STRG.2425.2,blat.proc3829871.chain_2547	2	STRG.2425.1,blat.proc3829871.chain_2541,blat.proc3829871.chain_2542,blat.proc3829871.chain_2544	4
scaffold_19	retained_intron	7701981	7702197	+	asmbl_22296,asmbl_22297	none	blat.proc3829881.chain_3150,blat.proc3829881.chain_3151	2	STRG.22243.1,STRG.22243.2,blat.proc3829881.chain_3149	3
scaffold_4	retained_intron	16480998	16481263	-	asmbl_41928,asmbl_41930	none	STRG.5226.2,Trinity_GG_19942_c0_g2_i2,blat.proc3829889.chain_1293,blat.proc3829889.chain_1294	4	STRG.5226.1,blat.proc3829889.chain_1289	2
scaffold_12	retained_intron	14989527	14989688	-	asmbl_8159	none	Trinity_GG_25571_c0_g1_i5,blat.proc3829893.chain_3741	2	STRG.15282.3,Trinity_GG_25571_c0_g1_i3,blat.proc3829893.chain_3740	3
scaffold_3	spliced_intron	7908386	7908760	-	asmbl_38947	none	STRG.3369.1,blat.proc3829887.chain_3165	2	STRG.3369.2,blat.proc3829887.chain_3164	2
scaffold_10	alt_acceptor	17349930	17349931	-	asmbl_3955	none	blat.proc3829893.chain_1594	1	blat.proc3829893.chain_1595	1
scaffold_10	spliced_intron	6071958	6072084	-	asmbl_3340,asmbl_3341,asmbl_3344,asmbl_3345,asmbl_3347,asmbl_3348,asmbl_3349	none	STRG.12437.1,STRG.12437.2,STRG.12437.3,blat.proc3829893.chain_918,blat.proc3829893.chain_919,blat.proc3829893.chain_920,blat.proc3829893.chain_922,blat.proc3829893.chain_924	8	STRG.12437.5,blat.proc3829893.chain_921,blat.proc3829893.chain_923	3
scaffold_6	starts_in_intron	12654293	12654293	+	asmbl_47366,asmbl_47368	none	STRG.8019.2,Trinity_GG_4365_c0_g1_i2,blat.proc3829875.chain_367	3	STRG.8019.1,blat.proc3829875.chain_365,blat.proc3829875.chain_366	3
scaffold_13	spliced_intron	398875	400049	-	asmbl_9305,asmbl_9307,asmbl_9308,asmbl_9309,asmbl_9310,asmbl_9311,asmbl_9314,asmbl_9315,asmbl_9316,asmbl_9317,asmbl_9318	none	STRG.15428.1,STRG.15428.2,STRG.15428.3,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i7,Trinity_GG_25691_c0_g1_i8,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_220,blat.proc3829895.chain_221,blat.proc3829895.chain_222,blat.proc3829895.chain_224,blat.proc3829895.chain_226,blat.proc3829895.chain_230,blat.proc3829895.chain_232,blat.proc3829895.chain_233	17	Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i25,blat.proc3829895.chain_223,blat.proc3829895.chain_229	4
scaffold_13	retained_intron	398875	400388	-	asmbl_9312,asmbl_9313	none	Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i25,blat.proc3829895.chain_223,blat.proc3829895.chain_229	4	Trinity_GG_25691_c0_g1_i10,blat.proc3829895.chain_228	2
scaffold_20	retained_intron	1490437	1490472	+	asmbl_25570,asmbl_25572,asmbl_25573,asmbl_25574	none	STRG.22855.1,STRG.22855.3,STRG.22855.5,Trinity_GG_12610_c1_g1_i3,Trinity_GG_12610_c1_g1_i4,blat.proc3829883.chain_15,blat.proc3829883.chain_16,blat.proc3829883.chain_17	8	STRG.22855.2	1
scaffold_13	retained_intron	5949932	5950148	-	asmbl_9717,asmbl_9721	none	STRG.15896.5,blat.proc3829895.chain_638	2	STRG.15896.1,STRG.15896.2,STRG.15896.3,STRG.15896.4,blat.proc3829895.chain_637	5
scaffold_5	starts_in_intron	8729636	8729636	-	asmbl_45610	none	blat.proc3829889.chain_2282	1	STRG.6197.1,blat.proc3829889.chain_2281	2
scaffold_3	retained_intron	8163660	8164221	-	asmbl_38964	none	Trinity_GG_18833_c2_g1_i1,blat.proc3829887.chain_3138	2	Trinity_GG_18833_c2_g2_i5,blat.proc3829887.chain_3141	2
scaffold_21	alt_donor	8182169	8182170	+	asmbl_28809	none	STRG.24339.1,blat.proc3829883.chain_1468	2	STRG.24339.2	1
scaffold_15	ends_in_intron	13562807	13562807	-	asmbl_15660	none	blat.proc3829895.chain_3523	1	STRG.18782.1,STRG.18782.2,STRG.18782.3,blat.proc3829895.chain_3524,blat.proc3829895.chain_3525	5
scaffold_11	spliced_intron	13593204	13593300	-	asmbl_7125	none	blat.proc3829893.chain_2655	1	STRG.14205.1,Trinity_GG_24961_c0_g1_i2,blat.proc3829893.chain_2656,blat.proc3829893.chain_2657	4
scaffold_6	alt_donor	12888466	12888467	+	asmbl_47376	none	STRG.8041.1,blat.proc3829875.chain_390	2	STRG.8041.2	1
scaffold_9	alt_donor	16568264	16568265	+	asmbl_54580	none	STRG.11798.2	1	STRG.11798.1,Trinity_GG_6586_c0_g1_i14,Trinity_GG_6586_c0_g1_i15,Trinity_GG_6586_c0_g1_i21,Trinity_GG_6586_c0_g1_i5,blat.proc3829877.chain_554,blat.proc3829877.chain_556,blat.proc3829877.chain_557,blat.proc3829877.chain_558	9
scaffold_13	starts_in_intron	7370841	7370841	+	asmbl_11029	none	blat.proc3829879.chain_690	1	STRG.16021.1,Trinity_GG_8780_c0_g1_i1,blat.proc3829879.chain_689	3
scaffold_3	spliced_intron	13327306	13327386	-	asmbl_39200,asmbl_39201,asmbl_39202	none	STRG.3677.1,STRG.3677.2,Trinity_GG_19030_c0_g1_i2,blat.proc3829887.chain_3455	4	Trinity_GG_19030_c0_g1_i3,blat.proc3829887.chain_3454	2
scaffold_23	starts_in_intron	357257	357257	-	asmbl_31316	none	STRG.25543.2	1	STRG.25543.1,blat.proc3829899.chain_2649,blat.proc3829899.chain_2650,blat.proc3829899.chain_2652,blat.proc3829899.chain_2653,blat.proc3829899.chain_2655,blat.proc3829899.chain_2656	7
scaffold_8	starts_in_intron	16543605	16543605	-	asmbl_53437	none	blat.proc3829891.chain_2802	1	STRG.10629.1,blat.proc3829891.chain_2800,blat.proc3829891.chain_2801	3
scaffold_23	starts_in_intron	4899650	4899650	+	asmbl_30835	none	Trinity_GG_14276_c0_g1_i3,blat.proc3829883.chain_2746	2	STRG.25862.1,STRG.25862.2,STRG.25862.3,Trinity_GG_14276_c0_g1_i1,Trinity_GG_14276_c0_g1_i4,blat.proc3829883.chain_2747,blat.proc3829883.chain_2748	7
scaffold_6	alternate_exon	8548635	8548666	+	asmbl_47081	none	STRG.7724.2,Trinity_GG_4234_c0_g1_i2,blat.proc3829875.chain_81	3	STRG.7724.1,Trinity_GG_4234_c0_g1_i1,blat.proc3829875.chain_82	3
scaffold_28	starts_in_intron	4699562	4699562	+	asmbl_38237	none	Trinity_GG_16429_c1_g2_i1,blat.proc3829885.chain_2744	2	STRG.29616.1,STRG.29616.2,blat.proc3829885.chain_2743	3
scaffold_4	starts_in_intron	1970862	1970862	+	asmbl_42474	none	blat.proc3829873.chain_570	1	STRG.4210.1,STRG.4210.2,blat.proc3829873.chain_571,blat.proc3829873.chain_572	4
scaffold_23	starts_in_intron	7020747	7020747	+	asmbl_30962	none	blat.proc3829883.chain_2890	1	STRG.26008.1	1
scaffold_11	spliced_intron	2833544	2833641	+	asmbl_5338,asmbl_5339	none	STRG.13398.1,Trinity_GG_7355_c0_g1_i1,blat.proc3829877.chain_1884,blat.proc3829877.chain_1885	4	blat.proc3829877.chain_1886	1
scaffold_20	alternate_exon	11182967	11183042	-	asmbl_27073	none	STRG.23616.2,blat.proc3829899.chain_628	2	STRG.23616.1,blat.proc3829899.chain_629	2
scaffold_17	alt_donor	8615198	8615199	+	asmbl_18131,asmbl_18132,asmbl_18133,asmbl_18135	none	STRG.20462.1,STRG.20462.3,STRG.20462.4,STRG.20462.5,blat.proc3829881.chain_1266,blat.proc3829881.chain_1267,blat.proc3829881.chain_1268,blat.proc3829881.chain_1269,blat.proc3829881.chain_1271	9	blat.proc3829881.chain_1270	1
scaffold_27	skipped_exon	2550132	2552911	-	asmbl_36780	none	STRG.28710.1,blat.proc3829901.chain_1864	2	STRG.28710.2,blat.proc3829901.chain_1863	2
scaffold_15	spliced_intron	13760201	13760410	-	asmbl_15681,asmbl_15683,asmbl_15684	none	STRG.18798.1,blat.proc3829895.chain_3562,blat.proc3829895.chain_3565,blat.proc3829895.chain_3566	4	STRG.18798.2,Trinity_GG_27577_c1_g1_i2,blat.proc3829895.chain_3563	3
scaffold_10	alt_acceptor	6000756	6000757	+	asmbl_4492	none	STRG.12414.2,blat.proc3829877.chain_1045	2	STRG.12414.1,blat.proc3829877.chain_1044	2
scaffold_5	retained_intron	5754426	5756080	+	asmbl_44034,asmbl_44035	none	STRG.5987.1,Trinity_GG_3278_c0_g1_i2	2	STRG.5987.2,blat.proc3829873.chain_2148	2
scaffold_8	retained_intron	17494980	17495324	+	asmbl_52470	none	STRG.10668.2,Trinity_GG_5917_c0_g1_i2,Trinity_GG_5917_c1_g1_i1,blat.proc3829875.chain_3155,blat.proc3829875.chain_3160	5	STRG.10668.4	1
scaffold_2	spliced_intron	4836605	4836722	-	asmbl_23129	none	STRG.1904.1	1	STRG.1904.2	1
scaffold_4	starts_in_intron	12679906	12679906	-	asmbl_41692	none	blat.proc3829889.chain_969	1	STRG.4906.1,STRG.4906.2,blat.proc3829889.chain_970,blat.proc3829889.chain_972	4
scaffold_11	spliced_intron	8601859	8601985	+	asmbl_5768,asmbl_5769,asmbl_5771,asmbl_5774	none	STRG.13863.1,STRG.13863.2,STRG.13863.3,Trinity_GG_7654_c0_g1_i2,Trinity_GG_7654_c0_g1_i7,blat.proc3829877.chain_2375,blat.proc3829877.chain_2376,blat.proc3829877.chain_2379	8	Trinity_GG_7654_c0_g1_i1,blat.proc3829877.chain_2378	2
scaffold_19	starts_in_intron	31535	31535	+	asmbl_21974	none	Trinity_GG_12057_c0_g1_i1	1	STRG.21811.1,Trinity_GG_12057_c0_g1_i2,Trinity_GG_12057_c0_g1_i3,blat.proc3829881.chain_2765,blat.proc3829881.chain_2767	5
scaffold_15	alt_acceptor	4566555	4566556	+	asmbl_14101	none	STRG.18173.2,Trinity_GG_9942_c0_g1_i4,blat.proc3829879.chain_2745	3	STRG.18173.3,Trinity_GG_9942_c0_g1_i5,blat.proc3829879.chain_2743	3
scaffold_825	alt_donor	3663	3664	+	asmbl_53670	none	STRG.30456.1	1	STRG.30456.2	1
scaffold_15	retained_exon	15184893	15185114	+	asmbl_14674,asmbl_14675,asmbl_14676,asmbl_14677,asmbl_14682,asmbl_14683,asmbl_14684,asmbl_14685,asmbl_14689,asmbl_14690,asmbl_14691	none	STRG.18906.1,STRG.18906.3,blat.proc3829879.chain_3474,blat.proc3829879.chain_3475,blat.proc3829879.chain_3476,blat.proc3829879.chain_3477,blat.proc3829879.chain_3478,blat.proc3829879.chain_3479,blat.proc3829879.chain_3481,blat.proc3829879.chain_3482,blat.proc3829879.chain_3485,blat.proc3829879.chain_3486,blat.proc3829879.chain_3487	13	STRG.18906.2,blat.proc3829879.chain_3471,blat.proc3829879.chain_3472,blat.proc3829879.chain_3473,blat.proc3829879.chain_3480,blat.proc3829879.chain_3484	6
scaffold_15	alternate_exon	15857503	15857571	+	asmbl_14780	none	blat.proc3829879.chain_3543	1	STRG.18964.2,Trinity_GG_10383_c0_g1_i8,blat.proc3829879.chain_3544	3
scaffold_26	spliced_intron	9773180	9773315	+	asmbl_35777,asmbl_35778,asmbl_35780,asmbl_35781,asmbl_35782,asmbl_35784,asmbl_35785,asmbl_35786,asmbl_35787,asmbl_35788,asmbl_35790	none	STRG.28501.1,STRG.28501.10,STRG.28501.2,STRG.28501.3,STRG.28501.4,STRG.28501.5,STRG.28501.9,blat.proc3829885.chain_1432,blat.proc3829885.chain_1433,blat.proc3829885.chain_1434,blat.proc3829885.chain_1436,blat.proc3829885.chain_1437	12	STRG.28501.6,blat.proc3829885.chain_1435	2
scaffold_16	retained_intron	5488508	5488595	-	asmbl_16282	none	STRG.19290.2,Trinity_GG_27854_c0_g1_i2,blat.proc3829897.chain_339	3	STRG.19290.1,Trinity_GG_27854_c0_g1_i3,blat.proc3829897.chain_338	3
scaffold_19	starts_in_intron	12121699	12121699	+	asmbl_22555	none	Trinity_GG_12470_c1_g1_i2,blat.proc3829881.chain_3490	2	STRG.22527.1,blat.proc3829881.chain_3488,blat.proc3829881.chain_3489	3
scaffold_8	spliced_intron	4873126	4873930	+	asmbl_51857,asmbl_51859	none	STRG.9943.3,STRG.9943.4,blat.proc3829875.chain_2420,blat.proc3829875.chain_2421	4	STRG.9943.5,Trinity_GG_5525_c0_g1_i4,blat.proc3829875.chain_2424,blat.proc3829875.chain_2425	4
scaffold_1	alt_donor	5765390	5765391	+	asmbl_1783	none	STRG.384.1,blat.proc3829871.chain_447	2	STRG.384.2,Trinity_GG_252_c1_g1_i1,blat.proc3829871.chain_448	3
scaffold_18	alt_acceptor	3915622	3915623	-	asmbl_19819,asmbl_19821,asmbl_19822,asmbl_19823,asmbl_19824	none	STRG.21192.2,STRG.21192.3,STRG.21192.4,STRG.21192.5,blat.proc3829897.chain_2089	5	STRG.21192.1	1
scaffold_20	retained_intron	9628124	9629033	+	asmbl_26024,asmbl_26025	none	STRG.23488.1,STRG.23488.3,Trinity_GG_12972_c0_g1_i1,blat.proc3829883.chain_572,blat.proc3829883.chain_574,blat.proc3829883.chain_575	6	STRG.23488.2,blat.proc3829883.chain_573	2
scaffold_4	spliced_intron	19753353	19753666	+	asmbl_43505,asmbl_43506	none	STRG.5561.1,STRG.5561.3,Trinity_GG_3042_c0_g1_i1,Trinity_GG_3042_c0_g1_i2,blat.proc3829873.chain_1752,blat.proc3829873.chain_1753	6	STRG.5561.2,Trinity_GG_3042_c0_g1_i4,blat.proc3829873.chain_1754	3
scaffold_15	ends_in_intron	13042510	13042510	+	asmbl_14560	none	blat.proc3829879.chain_3348	1	STRG.18730.1,Trinity_GG_10288_c0_g1_i1,blat.proc3829879.chain_3345,blat.proc3829879.chain_3347	4
scaffold_3	skipped_exon	17083146	17084104	-	asmbl_39482	none	STRG.3945.2	1	STRG.3945.1	1
scaffold_2	alternate_exon	6086464	6086639	-	asmbl_23202	none	STRG.1980.3,Trinity_GG_18112_c0_g1_i5,blat.proc3829887.chain_1840	3	STRG.1980.1,blat.proc3829887.chain_1841	2
scaffold_10	alternate_exon	9062854	9063088	-	asmbl_3570	none	STRG.12643.1,blat.proc3829893.chain_1168	2	blat.proc3829893.chain_1162,blat.proc3829893.chain_1164	2
scaffold_24	spliced_intron	9096592	9096710	-	asmbl_33121	none	STRG.26931.1,blat.proc3829901.chain_181	2	blat.proc3829901.chain_179	1
scaffold_19	alternate_exon	13234905	13241466	-	asmbl_21826	none	STRG.22682.3,blat.proc3829897.chain_3357	2	blat.proc3829897.chain_3358	1
scaffold_13	starts_in_intron	7508236	7508236	-	asmbl_9844,asmbl_9845,asmbl_9848,asmbl_9850,asmbl_9851	none	STRG.16034.1,STRG.16034.2,blat.proc3829895.chain_813,blat.proc3829895.chain_816,blat.proc3829895.chain_820,blat.proc3829895.chain_822	6	STRG.16034.5,Trinity_GG_26030_c1_g1_i1	2
scaffold_10	starts_in_intron	10572085	10572085	+	asmbl_4701	none	STRG.12742.2,Trinity_GG_6972_c0_g1_i2	2	STRG.12742.1,Trinity_GG_6972_c0_g1_i6	2
scaffold_10	alternate_exon	4342605	4342639	-	asmbl_3203	none	STRG.12269.1	1	STRG.12269.2,blat.proc3829893.chain_725	2
scaffold_2	starts_in_intron	6348949	6348949	-	asmbl_23222	none	Trinity_GG_18078_c0_g1_i3,blat.proc3829887.chain_1765	2	STRG.2000.1,STRG.2000.2,Trinity_GG_18078_c0_g1_i1,Trinity_GG_18078_c0_g1_i4,blat.proc3829887.chain_1763,blat.proc3829887.chain_1764	6
scaffold_12	spliced_intron	14124654	14125258	-	asmbl_8118,asmbl_8119,asmbl_8120,asmbl_8122	none	STRG.15232.1,blat.proc3829893.chain_3710,blat.proc3829893.chain_3711	3	Trinity_GG_25557_c1_g1_i1,blat.proc3829893.chain_3712	2
scaffold_15	retained_intron	2564009	2564591	+	asmbl_14009	none	STRG.18036.4	1	STRG.18036.3,Trinity_GG_9908_c0_g1_i9	2
scaffold_12	retained_intron	10341771	10341927	-	asmbl_7873,asmbl_7875	none	STRG.14992.2,STRG.14992.3,blat.proc3829893.chain_3386	3	STRG.14992.1,blat.proc3829893.chain_3387	2
scaffold_2	alt_acceptor	2993177	2993178	+	asmbl_24291	none	STRG.1740.2	1	STRG.1740.1,blat.proc3829871.chain_1756	2
scaffold_22	retained_exon	6130242	6130480	+	asmbl_29396	none	blat.proc3829883.chain_2010	1	STRG.24955.7,blat.proc3829883.chain_2007	2
scaffold_13	alt_acceptor	354724	354725	-	asmbl_9273	none	Trinity_GG_25667_c0_g1_i10,blat.proc3829895.chain_172	2	STRG.15424.1,Trinity_GG_25667_c0_g1_i4,Trinity_GG_25667_c0_g1_i5,Trinity_GG_25667_c0_g1_i6,Trinity_GG_25667_c0_g1_i7,Trinity_GG_25667_c0_g1_i8,blat.proc3829895.chain_167,blat.proc3829895.chain_168,blat.proc3829895.chain_169,blat.proc3829895.chain_170,blat.proc3829895.chain_171,blat.proc3829895.chain_174	12
scaffold_7	spliced_intron	2734406	2734533	+	asmbl_50541	none	STRG.8692.1,blat.proc3829875.chain_1116	2	blat.proc3829875.chain_1115	1
scaffold_14	alt_acceptor	15724459	15724460	-	asmbl_13725	none	STRG.17797.3	1	STRG.17797.1,STRG.17797.2,blat.proc3829895.chain_2451	3
scaffold_1	alternate_exon	9297570	9297642	-	asmbl_538	none	blat.proc3829887.chain_532	1	blat.proc3829887.chain_533	1
scaffold_14	starts_in_intron	7473953	7473953	-	asmbl_13198	none	blat.proc3829895.chain_1879	1	STRG.17176.1,STRG.17176.2,STRG.17176.3,blat.proc3829895.chain_1878	4
scaffold_9	retained_exon	644077	644687	+	asmbl_53764	none	STRG.10785.3	1	STRG.10785.1,blat.proc3829875.chain_3238	2
scaffold_14	alternate_exon	8006022	8007445	+	asmbl_12170	none	STRG.17203.3	1	Trinity_GG_9476_c0_g1_i3,blat.proc3829879.chain_1951	2
scaffold_16	ends_in_intron	9144882	9144882	+	asmbl_17263	none	blat.proc3829881.chain_395	1	STRG.19502.1,STRG.19502.2,STRG.19502.3,blat.proc3829881.chain_392,blat.proc3829881.chain_393,blat.proc3829881.chain_396,blat.proc3829881.chain_397	7
scaffold_22	retained_exon	4287918	4287946	-	asmbl_30003,asmbl_30007	none	STRG.24837.1,blat.proc3829899.chain_1955,blat.proc3829899.chain_1956	3	STRG.24837.3	1
scaffold_4	alternate_exon	18275974	18276005	-	asmbl_42106	none	STRG.5423.3	1	STRG.5423.1,STRG.5423.2	2
scaffold_1	alt_donor	14563446	14563447	-	asmbl_945	none	STRG.1055.2,blat.proc3829887.chain_975	2	STRG.1055.1,blat.proc3829887.chain_974	2
scaffold_11	alt_donor	10268656	10268657	-	asmbl_6967,asmbl_6968	none	STRG.14022.1,STRG.14022.3,blat.proc3829893.chain_2381,blat.proc3829893.chain_2383	4	STRG.14022.2,blat.proc3829893.chain_2382,blat.proc3829893.chain_2384	3
scaffold_1	retained_intron	2796391	2796537	+	asmbl_1552	none	STRG.178.2,blat.proc3829871.chain_194	2	STRG.178.1,blat.proc3829871.chain_195	2
scaffold_17	starts_in_intron	4188278	4188278	-	asmbl_18886,asmbl_18887	none	STRG.20157.2,STRG.20157.3,blat.proc3829897.chain_1129	3	STRG.20157.1,blat.proc3829897.chain_1127	2
scaffold_2	retained_intron	7214953	7215092	+	asmbl_24573	none	STRG.2054.3,Trinity_GG_1174_c0_g1_i8,blat.proc3829871.chain_2151	3	STRG.2054.1,STRG.2054.2,Trinity_GG_1174_c0_g1_i5,Trinity_GG_1174_c0_g1_i7,blat.proc3829871.chain_2148,blat.proc3829871.chain_2154	6
scaffold_25	retained_intron	7903393	7903604	+	asmbl_33684	none	STRG.27597.1,Trinity_GG_15189_c0_g1_i1,blat.proc3829885.chain_574	3	STRG.27597.2,blat.proc3829885.chain_573	2
scaffold_5	retained_intron	8539438	8539884	-	asmbl_45594,asmbl_45595	none	blat.proc3829889.chain_2247,blat.proc3829889.chain_2249	2	STRG.6191.4,blat.proc3829889.chain_2250	2
scaffold_20	retained_exon	651139	651339	-	asmbl_26440	none	STRG.22754.1,blat.proc3829897.chain_3535	2	STRG.22754.2	1
scaffold_3	spliced_intron	3261824	3262038	+	asmbl_39897,asmbl_39899,asmbl_39904,asmbl_39906	none	STRG.3087.1,STRG.3087.6,blat.proc3829871.chain_3297,blat.proc3829871.chain_3309	4	blat.proc3829871.chain_3306	1
scaffold_12	alternate_exon	10534378	10536248	+	asmbl_8891	none	STRG.15006.2,Trinity_GG_8266_c0_g1_i1,blat.proc3829877.chain_3468	3	Trinity_GG_8266_c0_g1_i3,blat.proc3829877.chain_3467	2
scaffold_25	spliced_intron	9337633	9337746	+	asmbl_33798	none	blat.proc3829885.chain_775	1	blat.proc3829885.chain_772	1
scaffold_643	spliced_intron	1289	1370	-	asmbl_49428,asmbl_49429	none	STRG.30389.1,STRG.30389.2	2	blat.proc3829901.chain_3439	1
scaffold_7	retained_exon	15569134	15569204	-	asmbl_50203	none	blat.proc3829891.chain_1731	1	STRG.9545.1,blat.proc3829891.chain_1730	2
scaffold_7	retained_intron	4915842	4915925	+	asmbl_50643,asmbl_50646	none	STRG.8828.1,STRG.8828.3,blat.proc3829875.chain_1206	3	STRG.8828.2	1
scaffold_2	retained_exon	14014162	14014256	-	asmbl_23570	none	STRG.2393.1,Trinity_GG_18353_c0_g1_i1,blat.proc3829887.chain_2282	3	STRG.2393.2,Trinity_GG_18353_c0_g1_i2,blat.proc3829887.chain_2283	3
scaffold_1	starts_in_intron	12500584	12500584	-	asmbl_732	none	STRG.863.2,blat.proc3829887.chain_718	2	STRG.863.1,blat.proc3829887.chain_719	2
scaffold_10	skipped_exon	13914729	13915905	+	asmbl_4902	none	STRG.12970.2	1	STRG.12970.1	1
scaffold_9	spliced_intron	16575074	16575191	+	asmbl_54581	none	STRG.11786.3,blat.proc3829877.chain_535	2	STRG.11786.1,blat.proc3829877.chain_534	2
scaffold_7	alt_acceptor	1162675	1162676	+	asmbl_50457	none	STRG.8620.1,blat.proc3829875.chain_990	2	STRG.8620.2	1
scaffold_21	alternate_exon	3125162	3125225	-	asmbl_27545	none	STRG.23930.1	1	STRG.23930.3,STRG.23930.4,STRG.23930.5,Trinity_GG_30335_c0_g1_i6,blat.proc3829899.chain_977,blat.proc3829899.chain_978,blat.proc3829899.chain_979,blat.proc3829899.chain_981	8
scaffold_23	retained_intron	2197978	2198128	-	asmbl_31428	none	STRG.25670.2	1	STRG.25670.1	1
scaffold_10	ends_in_intron	6071864	6071864	-	asmbl_3342	none	STRG.12437.5	1	STRG.12437.1,STRG.12437.2,STRG.12437.3,blat.proc3829893.chain_918,blat.proc3829893.chain_919,blat.proc3829893.chain_920,blat.proc3829893.chain_921,blat.proc3829893.chain_922,blat.proc3829893.chain_923,blat.proc3829893.chain_924	10
scaffold_6	skipped_exon	9134833	9135545	+	asmbl_47148,asmbl_47152,asmbl_47153,asmbl_47154,asmbl_47155,asmbl_47156,asmbl_47157	none	STRG.7784.1,STRG.7784.2,STRG.7784.3,blat.proc3829875.chain_195,blat.proc3829875.chain_198,blat.proc3829875.chain_201,blat.proc3829875.chain_202	7	STRG.7784.4,blat.proc3829875.chain_197,blat.proc3829875.chain_203,blat.proc3829875.chain_204	4
scaffold_2	spliced_intron	4788146	4788560	+	asmbl_24403	none	STRG.1897.3,blat.proc3829871.chain_1851	2	STRG.1897.2,STRG.1897.4,blat.proc3829871.chain_1852	3
scaffold_20	retained_exon	3253020	3253159	-	asmbl_26613	none	STRG.23033.1,blat.proc3829899.chain_51	2	STRG.23033.2,blat.proc3829899.chain_52	2
scaffold_7	starts_in_intron	8216701	8216701	-	asmbl_49799	none	blat.proc3829891.chain_1240	1	STRG.9046.1,blat.proc3829891.chain_1241	2
scaffold_28	spliced_intron	107460	108782	-	asmbl_37214	none	STRG.29229.1,blat.proc3829901.chain_2342	2	STRG.29229.2,blat.proc3829901.chain_2341,blat.proc3829901.chain_2343	3
scaffold_5	alt_acceptor	18824262	18824263	+	asmbl_44946	none	STRG.7003.2,Trinity_GG_3852_c0_g1_i2,blat.proc3829873.chain_3156	3	STRG.7003.1,Trinity_GG_3852_c0_g1_i1,blat.proc3829873.chain_3155	3
scaffold_26	alt_acceptor	3338964	3338965	-	asmbl_34759	none	STRG.28005.2	1	STRG.28005.1	1
scaffold_13	alt_acceptor	8289223	8289224	+	asmbl_11100	none	STRG.16106.1,blat.proc3829879.chain_856	2	STRG.16106.2	1
scaffold_10	starts_in_intron	17194115	17194115	+	asmbl_5026	none	STRG.13155.2	1	STRG.13155.1	1
scaffold_6	starts_in_intron	13258380	13258380	-	asmbl_48841	none	STRG.8079.2,blat.proc3829891.chain_377	2	STRG.8079.1	1
scaffold_18	ends_in_intron	372926	372926	-	asmbl_19614	none	Trinity_GG_28783_c3_g1_i1,blat.proc3829897.chain_1882	2	STRG.20979.1,blat.proc3829897.chain_1875,blat.proc3829897.chain_1876,blat.proc3829897.chain_1879	4
scaffold_22	skipped_exon	9719199	9721961	+	asmbl_29600	none	STRG.25292.3	1	STRG.25292.1,STRG.25292.2,STRG.25292.4,blat.proc3829883.chain_2231	4
scaffold_1	alt_donor	12489299	12489300	+	asmbl_2213	none	STRG.859.2,Trinity_GG_525_c0_g1_i2,blat.proc3829871.chain_944	3	STRG.859.3	1
scaffold_17	retained_exon	5490393	5490524	-	asmbl_18979	none	STRG.20256.1,blat.proc3829897.chain_1205	2	STRG.20256.2	1
scaffold_9	alt_acceptor	5528971	5528972	+	asmbl_54035,asmbl_54039,asmbl_54040	none	STRG.11121.2,STRG.11121.3,STRG.11121.4,Trinity_GG_6215_c0_g1_i2,blat.proc3829875.chain_3648	5	STRG.11121.1,Trinity_GG_6215_c0_g1_i4,Trinity_GG_6215_c0_g1_i5,blat.proc3829875.chain_3647	4
scaffold_3	retained_intron	18937824	18937873	+	asmbl_40710	none	blat.proc3829873.chain_426	1	STRG.4063.2	1
scaffold_26	ends_in_intron	8449196	8449196	+	asmbl_35704	none	blat.proc3829885.chain_1451	1	STRG.28422.1,blat.proc3829885.chain_1449,blat.proc3829885.chain_1450	3
scaffold_6	spliced_intron	7936991	7937104	-	asmbl_48452	none	STRG.7666.3	1	blat.proc3829889.chain_3703,blat.proc3829889.chain_3706	2
scaffold_26	alternate_exon	5160405	5160433	+	asmbl_35494	none	STRG.28205.2,Trinity_GG_15581_c0_g1_i2,blat.proc3829885.chain_1215	3	STRG.28205.1,Trinity_GG_15581_c0_g1_i1,blat.proc3829885.chain_1216	3
scaffold_15	spliced_intron	13325591	13325794	+	asmbl_14571,asmbl_14575,asmbl_14580	none	STRG.18763.1,Trinity_GG_10264_c0_g1_i2,blat.proc3829879.chain_3300,blat.proc3829879.chain_3302	4	Trinity_GG_10264_c0_g1_i4,Trinity_GG_10264_c0_g1_i6,blat.proc3829879.chain_3296,blat.proc3829879.chain_3297,blat.proc3829879.chain_3298,blat.proc3829879.chain_3299,blat.proc3829879.chain_3301,blat.proc3829879.chain_3303,blat.proc3829879.chain_3304	9
scaffold_27	alternate_exon	6706460	6706877	+	asmbl_36357	none	STRG.29026.2,blat.proc3829885.chain_2154	2	STRG.29026.1	1
scaffold_20	alt_donor	7185226	7185227	-	asmbl_26805,asmbl_26807	none	blat.proc3829899.chain_302,blat.proc3829899.chain_306	2	STRG.23274.1,blat.proc3829899.chain_303,blat.proc3829899.chain_304	3
scaffold_20	alt_acceptor	1469616	1469617	-	asmbl_26505	none	STRG.22854.1,blat.proc3829897.chain_3657	2	STRG.22854.2,blat.proc3829897.chain_3660,blat.proc3829897.chain_3661	3
scaffold_14	starts_in_intron	13894154	13894154	-	asmbl_13641	none	STRG.17652.3,blat.proc3829895.chain_2388	2	STRG.17652.1,STRG.17652.2,blat.proc3829895.chain_2384,blat.proc3829895.chain_2387	4
scaffold_5	alt_acceptor	2166979	2166980	-	asmbl_45265	none	STRG.5744.2	1	STRG.5744.3	1
scaffold_9	retained_intron	8028814	8028894	-	asmbl_55082	none	blat.proc3829891.chain_3378	1	STRG.11218.1,STRG.11218.2,blat.proc3829891.chain_3379	3
scaffold_16	starts_in_intron	9143452	9143452	+	asmbl_17261,asmbl_17262	none	STRG.19502.3,blat.proc3829881.chain_396	2	STRG.19502.1,STRG.19502.2,blat.proc3829881.chain_392,blat.proc3829881.chain_393	4
scaffold_7	spliced_intron	13204588	13204713	+	asmbl_51195,asmbl_51196,asmbl_51197,asmbl_51198	none	STRG.9419.1,STRG.9419.2,STRG.9419.3,Trinity_GG_5219_c0_g1_i8,blat.proc3829875.chain_1853,blat.proc3829875.chain_1854,blat.proc3829875.chain_1856	7	Trinity_GG_5219_c0_g1_i5,blat.proc3829875.chain_1852	2
scaffold_3	alt_donor	7291132	7291133	-	asmbl_38912,asmbl_38914	none	STRG.3325.1,STRG.3325.2,blat.proc3829887.chain_3071	3	STRG.3325.3,blat.proc3829887.chain_3070	2
scaffold_7	starts_in_intron	8555699	8555699	+	asmbl_50902	none	Trinity_GG_5031_c0_g1_i1,blat.proc3829875.chain_1521	2	STRG.9072.1,Trinity_GG_5031_c0_g1_i2,blat.proc3829875.chain_1520	3
scaffold_6	starts_in_intron	17383462	17383462	+	asmbl_47687	none	Trinity_GG_4638_c0_g1_i1,blat.proc3829875.chain_818	2	STRG.8436.1,STRG.8436.2,Trinity_GG_4638_c0_g1_i3,blat.proc3829875.chain_821	4
scaffold_16	ends_in_intron	14438509	14438509	+	asmbl_17477,asmbl_17478	none	STRG.19805.1,STRG.19805.2	2	blat.proc3829881.chain_674	1
scaffold_6	alt_acceptor	12976800	12976801	+	asmbl_47395,asmbl_47396,asmbl_47398	none	STRG.8050.1,STRG.8050.2,blat.proc3829875.chain_460,blat.proc3829875.chain_461,blat.proc3829875.chain_462	5	STRG.8050.3,blat.proc3829875.chain_459	2
scaffold_25	alt_acceptor	6083065	6083066	+	asmbl_33592	none	STRG.27473.2	1	STRG.27473.1,Trinity_GG_15140_c0_g1_i1,blat.proc3829885.chain_498	3
scaffold_3	alternate_exon	4898960	4902028	-	asmbl_38777	none	STRG.3186.1,blat.proc3829887.chain_2865	2	STRG.3186.2	1
scaffold_9	skipped_exon	9530448	9530758	-	asmbl_55157	none	blat.proc3829891.chain_3448	1	STRG.11302.1,STRG.11302.2,blat.proc3829891.chain_3449,blat.proc3829891.chain_3450	4
scaffold_15	alt_acceptor	2799772	2799773	+	asmbl_14023	none	STRG.18051.2	1	STRG.18051.1,blat.proc3829879.chain_2695,blat.proc3829879.chain_2696,blat.proc3829879.chain_2697	4
scaffold_9	spliced_intron	12476191	12476332	+	asmbl_54420,asmbl_54421	none	blat.proc3829877.chain_343,blat.proc3829877.chain_344	2	STRG.11555.2,blat.proc3829877.chain_345	2
scaffold_28	starts_in_intron	4583005	4583005	-	asmbl_37540	none	STRG.29613.1,blat.proc3829901.chain_2740	2	STRG.29613.2	1
scaffold_9	alt_acceptor	12480608	12480609	-	asmbl_55342	none	STRG.11552.2	1	STRG.11552.1,blat.proc3829891.chain_3683	2
scaffold_8	retained_intron	5976013	5976120	-	asmbl_52846	none	STRG.9999.1,blat.proc3829891.chain_2178	2	STRG.9999.2	1
scaffold_23	retained_intron	9517036	9517096	-	asmbl_31816	none	Trinity_GG_31639_c1_g1_i1,blat.proc3829899.chain_3259	2	blat.proc3829899.chain_3260	1
scaffold_12	spliced_intron	12285468	12285562	-	asmbl_7983	none	STRG.15111.3	1	STRG.15111.2	1
scaffold_9	retained_intron	16575074	16575191	+	asmbl_54583	none	STRG.11786.1,blat.proc3829877.chain_534	2	STRG.11786.3,blat.proc3829877.chain_535	2
scaffold_6	alternate_exon	12631512	12631564	+	asmbl_47362	none	STRG.8015.1	1	STRG.8015.2,blat.proc3829875.chain_334	2
scaffold_27	retained_intron	3063415	3063502	+	asmbl_36139,asmbl_36140,asmbl_36141	none	STRG.28771.2,Trinity_GG_15920_c0_g1_i2,blat.proc3829885.chain_1851,blat.proc3829885.chain_1852,blat.proc3829885.chain_1853,blat.proc3829885.chain_1854	6	STRG.28771.1	1
scaffold_1	alternate_exon	1326129	1326180	+	asmbl_1471	none	STRG.80.1	1	STRG.80.2,blat.proc3829871.chain_104	2
scaffold_8	retained_intron	4960014	4960245	-	asmbl_52811	none	Trinity_GG_22561_c0_g1_i3,blat.proc3829891.chain_2106	2	STRG.9963.1,blat.proc3829891.chain_2102,blat.proc3829891.chain_2103,blat.proc3829891.chain_2104,blat.proc3829891.chain_2107	5
scaffold_7	retained_intron	11121409	11121518	-	asmbl_49961	none	Trinity_GG_22226_c0_g1_i1,blat.proc3829891.chain_1484	2	STRG.9248.1,blat.proc3829891.chain_1483	2
scaffold_13	spliced_intron	6396903	6397183	+	asmbl_10907,asmbl_10908,asmbl_10910,asmbl_10913,asmbl_10916	none	STRG.15914.2,STRG.15914.4,STRG.15914.5,Trinity_GG_8718_c0_g1_i4,Trinity_GG_8718_c0_g1_i5,Trinity_GG_8718_c0_g1_i8,Trinity_GG_8718_c0_g1_i9,blat.proc3829879.chain_549,blat.proc3829879.chain_550,blat.proc3829879.chain_552,blat.proc3829879.chain_556	11	Trinity_GG_8718_c0_g1_i3,blat.proc3829879.chain_554	2
scaffold_6	alternate_exon	5190334	5193921	+	asmbl_46863,asmbl_46868	none	STRG.7489.4,Trinity_GG_4091_c0_g1_i10,blat.proc3829873.chain_3587	3	blat.proc3829873.chain_3588	1
scaffold_27	ends_in_intron	2873378	2873378	+	asmbl_36095	none	Trinity_GG_15916_c0_g1_i4,blat.proc3829885.chain_1833	2	STRG.28749.1,STRG.28749.2,Trinity_GG_15916_c0_g1_i2,blat.proc3829885.chain_1830,blat.proc3829885.chain_1834	5
scaffold_7	starts_in_intron	1389204	1389204	-	asmbl_49537	none	blat.proc3829891.chain_924	1	STRG.8638.1,blat.proc3829891.chain_921,blat.proc3829891.chain_923,blat.proc3829891.chain_926,blat.proc3829891.chain_927	5
scaffold_17	ends_in_intron	10027336	10027336	+	asmbl_18284	none	Trinity_GG_11248_c1_g1_i1	1	STRG.20606.1,Trinity_GG_11248_c0_g1_i4,blat.proc3829881.chain_1338	3
scaffold_11	starts_in_intron	2472414	2472414	-	asmbl_6482	none	STRG.13381.1	1	STRG.13381.2	1
scaffold_10	skipped_exon	4130696	4132212	-	asmbl_3174	none	STRG.12241.1,blat.proc3829893.chain_642	2	STRG.12241.2,blat.proc3829893.chain_640	2
scaffold_21	starts_in_intron	5263424	5263424	-	asmbl_27657	none	blat.proc3829899.chain_1108	1	STRG.24043.1,Trinity_GG_30417_c0_g1_i1,blat.proc3829899.chain_1107	3
scaffold_2	spliced_intron	13445747	13445853	-	asmbl_23530,asmbl_23532	none	STRG.2365.1,blat.proc3829887.chain_2214,blat.proc3829887.chain_2216	3	blat.proc3829887.chain_2215	1
scaffold_16	spliced_intron	10449577	10449822	+	asmbl_17335,asmbl_17336,asmbl_17338,asmbl_17339,asmbl_17340	none	STRG.19602.1,STRG.19602.2,STRG.19602.3,STRG.19602.4,STRG.19602.5,Trinity_GG_10708_c0_g1_i3,blat.proc3829881.chain_423,blat.proc3829881.chain_426	8	Trinity_GG_10708_c0_g1_i1,blat.proc3829881.chain_424,blat.proc3829881.chain_425	3
scaffold_18	ends_in_intron	240091	240091	-	asmbl_19606	none	Trinity_GG_28774_c0_g1_i5	1	STRG.20966.1,STRG.20966.3,blat.proc3829897.chain_1862	3
scaffold_13	alt_donor	11755316	11755317	+	asmbl_11290	none	STRG.16303.1	1	STRG.16303.2	1
scaffold_87	alt_donor	13971	13972	+	asmbl_53702	none	STRG.30139.5	1	STRG.30139.3,STRG.30139.6	2
scaffold_4	retained_intron	9344094	9344316	-	asmbl_41547,asmbl_41548	none	blat.proc3829889.chain_860,blat.proc3829889.chain_862	2	STRG.4740.1,blat.proc3829889.chain_861,blat.proc3829889.chain_863	3
scaffold_20	spliced_intron	10986544	10986914	+	asmbl_26157,asmbl_26159	none	STRG.23608.1,Trinity_GG_13068_c0_g1_i1,Trinity_GG_13068_c0_g1_i4,blat.proc3829883.chain_750,blat.proc3829883.chain_751	5	STRG.23608.2,Trinity_GG_13068_c0_g1_i3,blat.proc3829883.chain_749	3
scaffold_4	ends_in_intron	8630434	8630434	-	asmbl_41523	none	Trinity_GG_19632_c0_g1_i1,blat.proc3829889.chain_773	2	STRG.4685.1,blat.proc3829889.chain_774	2
scaffold_20	alt_donor	11574972	11574973	-	asmbl_27084	none	STRG.23650.2	1	STRG.23650.1,STRG.23650.3,STRG.23650.4,blat.proc3829899.chain_596,blat.proc3829899.chain_597	5
scaffold_5	alt_donor	7320374	7320375	+	asmbl_44155	none	Trinity_GG_3345_c0_g2_i1	1	STRG.6121.2	1
scaffold_13	alt_donor	6968197	6968198	-	asmbl_9782	none	blat.proc3829895.chain_732	1	blat.proc3829895.chain_731	1
scaffold_23	retained_intron	7005777	7006309	-	asmbl_31726	none	Trinity_GG_31538_c0_g1_i2,blat.proc3829899.chain_3076	2	STRG.26005.3,blat.proc3829899.chain_3077	2
scaffold_14	starts_in_intron	15258478	15258478	+	asmbl_12572	none	Trinity_GG_9760_c1_g1_i2,blat.proc3829879.chain_2427	2	STRG.17739.2,STRG.17739.3,blat.proc3829879.chain_2426	3
scaffold_15	alt_acceptor	15447514	15447515	+	asmbl_14747	none	STRG.18933.2	1	STRG.18933.1,Trinity_GG_10389_c0_g1_i2,Trinity_GG_10389_c0_g1_i3,Trinity_GG_10389_c0_g1_i7,blat.proc3829879.chain_3560,blat.proc3829879.chain_3561,blat.proc3829879.chain_3564,blat.proc3829879.chain_3565	8
scaffold_24	retained_intron	6225905	6226490	-	asmbl_32929,asmbl_32930,asmbl_32931,asmbl_32932,asmbl_32937,asmbl_32938,asmbl_32940	none	STRG.26664.2,STRG.26664.3,blat.proc3829899.chain_3687,blat.proc3829899.chain_3690,blat.proc3829899.chain_3693,blat.proc3829899.chain_3695,blat.proc3829899.chain_3696	7	STRG.26664.1,Trinity_GG_31899_c0_g1_i6,blat.proc3829899.chain_3686,blat.proc3829899.chain_3688	4
scaffold_14	starts_in_intron	11436218	11436218	-	asmbl_13467	none	blat.proc3829895.chain_2160	1	STRG.17459.1,blat.proc3829895.chain_2159	2
scaffold_23	skipped_exon	10323621	10325802	-	asmbl_31857	none	STRG.26217.2,blat.proc3829899.chain_3271	2	STRG.26217.1,blat.proc3829899.chain_3272	2
scaffold_22	ends_in_intron	6128124	6128124	+	asmbl_29392	none	STRG.24955.5,blat.proc3829883.chain_1997	2	STRG.24955.3,STRG.24955.4,blat.proc3829883.chain_1996,blat.proc3829883.chain_1998,blat.proc3829883.chain_1999,blat.proc3829883.chain_2002	6
scaffold_5	alternate_exon	10299770	10299866	-	asmbl_45719,asmbl_45722,asmbl_45724,asmbl_45725	none	STRG.6324.1,STRG.6324.2,STRG.6324.3,blat.proc3829889.chain_2410,blat.proc3829889.chain_2412	5	Trinity_GG_20570_c3_g1_i1	1
scaffold_17	alternate_exon	11340419	11341157	-	asmbl_19323,asmbl_19326	none	STRG.20676.1,blat.proc3829897.chain_1581,blat.proc3829897.chain_1583	3	STRG.20676.2	1
scaffold_6	retained_intron	18784543	18784568	-	asmbl_49214	none	STRG.8545.1,Trinity_GG_21902_c0_g1_i1,blat.proc3829891.chain_887,blat.proc3829891.chain_889	4	STRG.8545.2	1
scaffold_2	starts_in_intron	3900839	3900839	+	asmbl_24343	none	Trinity_GG_1005_c0_g2_i1	1	STRG.1831.1,STRG.1831.2,STRG.1831.3,blat.proc3829871.chain_1839,blat.proc3829871.chain_1840,blat.proc3829871.chain_1842,blat.proc3829871.chain_1843	7
scaffold_9	alt_donor	10271869	10271870	+	asmbl_54267	none	STRG.11366.2	1	STRG.11366.1,blat.proc3829877.chain_140	2
scaffold_9	ends_in_intron	3673271	3673271	-	asmbl_54891	none	blat.proc3829891.chain_3074	1	STRG.10971.1,STRG.10971.3,blat.proc3829891.chain_3078,blat.proc3829891.chain_3082,blat.proc3829891.chain_3084,blat.proc3829891.chain_3085	6
scaffold_18	retained_intron	5988273	5988742	+	asmbl_20671,asmbl_20680	none	blat.proc3829881.chain_2206,blat.proc3829881.chain_2209,blat.proc3829881.chain_2211	3	blat.proc3829881.chain_2205,blat.proc3829881.chain_2207,blat.proc3829881.chain_2208,blat.proc3829881.chain_2212	4
scaffold_10	spliced_intron	2668615	2668805	+	asmbl_4266	none	STRG.12074.1,blat.proc3829877.chain_804	2	blat.proc3829877.chain_805	1
scaffold_26	alt_acceptor	6707719	6707720	-	asmbl_34970	none	STRG.28358.1,blat.proc3829901.chain_1524	2	STRG.28358.2	1
scaffold_23	retained_intron	10331164	10331283	+	asmbl_31144	none	Trinity_GG_14478_c0_g1_i1	1	STRG.26228.2	1
scaffold_2	alt_donor	1258301	1258302	-	asmbl_22865	none	blat.proc3829871.chain_1675	1	STRG.1588.1	1
scaffold_4	spliced_intron	6300842	6302966	+	asmbl_42718,asmbl_42719,asmbl_42720,asmbl_42721	none	STRG.4502.1,Trinity_GG_2497_c0_g1_i1,Trinity_GG_2497_c0_g1_i6,Trinity_GG_2497_c0_g1_i8,Trinity_GG_2497_c0_g1_i9,blat.proc3829873.chain_863,blat.proc3829873.chain_866,blat.proc3829873.chain_868,blat.proc3829873.chain_870	9	blat.proc3829873.chain_865,blat.proc3829873.chain_867,blat.proc3829873.chain_871	3
scaffold_23	alternate_exon	332224	332756	-	asmbl_31302,asmbl_31304	none	STRG.25530.1,STRG.25530.2,blat.proc3829899.chain_2625	3	STRG.25530.3,blat.proc3829899.chain_2626	2
scaffold_5	alt_donor	15112072	15112073	-	asmbl_46026,asmbl_46028	none	STRG.6691.2,STRG.6691.3,Trinity_GG_20764_c0_g1_i3,blat.proc3829889.chain_2733	4	STRG.6691.1,Trinity_GG_20764_c0_g1_i1,blat.proc3829889.chain_2732	3
scaffold_1	alternate_exon	9296467	9296576	-	asmbl_539	none	blat.proc3829887.chain_533	1	blat.proc3829887.chain_532	1
scaffold_20	alternate_exon	5925605	5925684	+	asmbl_25800	none	STRG.23185.2,Trinity_GG_12801_c0_g1_i1,blat.proc3829883.chain_313	3	STRG.23185.1	1
scaffold_28	spliced_intron	8422122	8422142	+	asmbl_38443	none	STRG.29896.1	1	Trinity_GG_16560_c0_g1_i1,Trinity_GG_16560_c0_g1_i2,blat.proc3829885.chain_2993	3
scaffold_13	spliced_intron	400473	401576	-	asmbl_9305,asmbl_9312,asmbl_9313,asmbl_9314,asmbl_9315,asmbl_9316,asmbl_9317,asmbl_9318	none	STRG.15428.1,STRG.15428.2,STRG.15428.3,Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i25,Trinity_GG_25691_c0_g1_i7,blat.proc3829895.chain_220,blat.proc3829895.chain_222,blat.proc3829895.chain_223,blat.proc3829895.chain_229,blat.proc3829895.chain_232	11	Trinity_GG_25691_c0_g1_i10,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i8,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_221,blat.proc3829895.chain_224,blat.proc3829895.chain_226,blat.proc3829895.chain_228,blat.proc3829895.chain_230,blat.proc3829895.chain_233	12
scaffold_7	alt_acceptor	18615578	18615579	-	asmbl_50304,asmbl_50306	none	STRG.9671.2,blat.proc3829891.chain_1915	2	blat.proc3829891.chain_1918	1
scaffold_14	spliced_intron	13217591	13219618	+	asmbl_12442,asmbl_12443,asmbl_12444	none	STRG.17599.1,STRG.17599.3,STRG.17599.4	3	STRG.17599.2,blat.proc3829879.chain_2266	2
scaffold_14	ends_in_intron	1327291	1327291	+	asmbl_11793	none	Trinity_GG_9241_c2_g1_i1,blat.proc3829879.chain_1518	2	STRG.16771.1,Trinity_GG_9241_c0_g1_i3,blat.proc3829879.chain_1515,blat.proc3829879.chain_1516	4
scaffold_24	alt_acceptor	6798947	6798948	-	asmbl_32970,asmbl_32971	none	STRG.26711.2,STRG.26711.3	2	STRG.26711.1,blat.proc3829901.chain_12,blat.proc3829901.chain_14,blat.proc3829901.chain_15	4
scaffold_11	alternate_exon	8904186	8904282	+	asmbl_5809	none	STRG.13900.2,Trinity_GG_7624_c0_g1_i2,blat.proc3829877.chain_2316	3	STRG.13900.1,Trinity_GG_7624_c0_g1_i1,blat.proc3829877.chain_2315	3
scaffold_18	skipped_exon	8399580	8401325	+	asmbl_20861	none	STRG.21503.4	1	STRG.21503.1,blat.proc3829881.chain_2515	2
scaffold_11	alternate_exon	14532000	14532249	+	asmbl_6071	none	blat.proc3829877.chain_2743	1	STRG.14239.1,STRG.14239.2,STRG.14239.3,Trinity_GG_7860_c0_g1_i2,Trinity_GG_7860_c0_g1_i6,Trinity_GG_7860_c0_g1_i7,blat.proc3829877.chain_2744,blat.proc3829877.chain_2745,blat.proc3829877.chain_2746,blat.proc3829877.chain_2747	10
scaffold_4	starts_in_intron	17803283	17803283	+	asmbl_43415	none	Trinity_GG_2947_c0_g1_i2,blat.proc3829873.chain_1597	2	STRG.5378.2,blat.proc3829873.chain_1596	2
scaffold_28	skipped_exon	5014513	5014754	+	asmbl_38251	none	STRG.29628.3,Trinity_GG_16433_c0_g2_i4,blat.proc3829885.chain_2755	3	STRG.29628.1,STRG.29628.2,Trinity_GG_16433_c0_g2_i3,blat.proc3829885.chain_2757	4
scaffold_9	skipped_exon	18355765	18356507	-	asmbl_55663	none	STRG.11870.2,blat.proc3829893.chain_286	2	STRG.11870.1,blat.proc3829893.chain_284	2
scaffold_17	alt_acceptor	13610743	13610744	+	asmbl_18460	none	STRG.20825.2	1	STRG.20825.1	1
scaffold_20	spliced_intron	11678784	11679288	-	asmbl_27105	none	STRG.23659.3,blat.proc3829899.chain_658	2	STRG.23659.2,blat.proc3829899.chain_656,blat.proc3829899.chain_659	3
scaffold_14	retained_exon	9273524	9273610	-	asmbl_13343,asmbl_13345,asmbl_13348	none	STRG.17323.1,blat.proc3829895.chain_1995,blat.proc3829895.chain_1996,blat.proc3829895.chain_1997	4	STRG.17323.4	1
scaffold_28	spliced_intron	5611216	5611372	-	asmbl_37623	none	STRG.29674.3,Trinity_GG_33655_c0_g1_i8,blat.proc3829901.chain_2809	3	STRG.29674.1,STRG.29674.4,STRG.29674.5,blat.proc3829901.chain_2807,blat.proc3829901.chain_2810	5
scaffold_22	ends_in_intron	5828814	5828814	-	asmbl_30055	none	blat.proc3829899.chain_2032	1	STRG.24915.1,blat.proc3829899.chain_2031	2
scaffold_1	retained_intron	18784825	18784961	-	asmbl_1127	none	STRG.1308.1,blat.proc3829887.chain_1205	2	STRG.1308.2,blat.proc3829887.chain_1206	2
scaffold_4	skipped_exon	5221309	5222170	-	asmbl_41306	none	STRG.4411.1,Trinity_GG_19481_c0_g1_i2,blat.proc3829889.chain_517	3	STRG.4411.2,blat.proc3829889.chain_518	2
scaffold_3	skipped_exon	14513809	14514499	-	asmbl_39333	none	STRG.3790.2	1	STRG.3790.1,STRG.3790.3,Trinity_GG_19112_c0_g1_i1,blat.proc3829887.chain_3597	4
scaffold_14	alternate_exon	12629700	12629772	-	asmbl_13566,asmbl_13571,asmbl_13573	none	STRG.17566.2,Trinity_GG_26902_c0_g1_i2,blat.proc3829895.chain_2325,blat.proc3829895.chain_2328	4	STRG.17566.1,STRG.17566.3,blat.proc3829895.chain_2326,blat.proc3829895.chain_2327,blat.proc3829895.chain_2329,blat.proc3829895.chain_2330,blat.proc3829895.chain_2331,blat.proc3829895.chain_2332,blat.proc3829895.chain_2333	9
scaffold_18	spliced_intron	5984775	5985191	+	asmbl_20674,asmbl_20677,asmbl_20680	none	STRG.21346.1,blat.proc3829881.chain_2205,blat.proc3829881.chain_2211,blat.proc3829881.chain_2212	4	STRG.21346.3,blat.proc3829881.chain_2204	2
scaffold_4	retained_intron	13590208	13590355	+	asmbl_43136,asmbl_43137,asmbl_43140	none	STRG.4984.2,STRG.4984.3,Trinity_GG_2734_c0_g1_i1,blat.proc3829873.chain_1242,blat.proc3829873.chain_1243	5	STRG.4984.1,blat.proc3829873.chain_1241	2
scaffold_21	starts_in_intron	7004230	7004230	-	asmbl_27798	none	STRG.24216.2,blat.proc3829899.chain_1276	2	STRG.24216.1,blat.proc3829899.chain_1277	2
scaffold_16	alt_acceptor	5515687	5515688	-	asmbl_16299	none	STRG.19297.2	1	STRG.19297.1,Trinity_GG_27814_c0_g1_i1,blat.proc3829897.chain_264	3
scaffold_2	alternate_exon	18308131	18308459	-	asmbl_23790	none	STRG.2713.1,blat.proc3829887.chain_2540	2	STRG.2713.2,STRG.2713.3,blat.proc3829887.chain_2539	3
scaffold_24	starts_in_intron	5947887	5947887	+	asmbl_32263,asmbl_32271,asmbl_32272	none	Trinity_GG_14738_c0_g1_i18,blat.proc3829883.chain_3540,blat.proc3829883.chain_3541,blat.proc3829883.chain_3546	4	STRG.26645.1,blat.proc3829883.chain_3537,blat.proc3829883.chain_3539,blat.proc3829883.chain_3542,blat.proc3829883.chain_3543,blat.proc3829883.chain_3544,blat.proc3829883.chain_3545,blat.proc3829883.chain_3547,blat.proc3829883.chain_3548,blat.proc3829883.chain_3549	10
scaffold_87	alt_acceptor	15007	15008	+	asmbl_53703	none	STRG.30139.3	1	STRG.30139.5,STRG.30139.6	2
scaffold_9	alt_acceptor	11019728	11019729	-	asmbl_55231,asmbl_55232	none	STRG.11396.2,blat.proc3829891.chain_3554	2	STRG.11396.1,blat.proc3829891.chain_3555	2
scaffold_9	spliced_intron	15589185	15589902	+	asmbl_54557,asmbl_54558	none	blat.proc3829877.chain_498,blat.proc3829877.chain_499	2	blat.proc3829877.chain_500,blat.proc3829877.chain_501	2
scaffold_7	alt_donor	8662294	8662295	-	asmbl_49837	none	blat.proc3829891.chain_1356	1	STRG.9091.1,STRG.9091.2,blat.proc3829891.chain_1357,blat.proc3829891.chain_1358	4
scaffold_11	alt_donor	8790357	8790358	-	asmbl_6859	none	STRG.13891.4	1	STRG.13891.3	1
scaffold_10	retained_exon	17095062	17095121	-	asmbl_3933,asmbl_3935	none	STRG.13145.1,blat.proc3829893.chain_1578,blat.proc3829893.chain_1579	3	blat.proc3829893.chain_1577	1
scaffold_9	retained_exon	9706783	9706824	+	asmbl_54214,asmbl_54221	none	Trinity_GG_6324_c1_g1_i1,blat.proc3829877.chain_111,blat.proc3829877.chain_114	3	STRG.11336.2,blat.proc3829877.chain_109	2
scaffold_3	retained_exon	10950535	10950576	-	asmbl_39079,asmbl_39082	none	STRG.3536.2,blat.proc3829887.chain_3310,blat.proc3829887.chain_3311	3	STRG.3536.1,blat.proc3829887.chain_3312,blat.proc3829887.chain_3313	3
scaffold_28	alt_donor	7884628	7884629	+	asmbl_38408	none	STRG.29835.1,Trinity_GG_16522_c0_g1_i1,blat.proc3829885.chain_2918	3	STRG.29835.2	1
scaffold_16	ends_in_intron	9458260	9458260	+	asmbl_17287	none	blat.proc3829881.chain_344	1	STRG.19535.1,blat.proc3829881.chain_345	2
scaffold_6	retained_exon	12900357	12900510	+	asmbl_47378,asmbl_47380	none	STRG.8040.1,STRG.8040.3,blat.proc3829875.chain_412	3	STRG.8040.2	1
scaffold_8	alt_donor	6902999	6903000	+	asmbl_51953,asmbl_51955,asmbl_51959,asmbl_51960	none	STRG.10042.1,STRG.10042.2,blat.proc3829875.chain_2536,blat.proc3829875.chain_2537,blat.proc3829875.chain_2541	5	blat.proc3829875.chain_2542	1
scaffold_8	retained_intron	764211	764246	+	asmbl_51659	none	STRG.9728.1,Trinity_GG_5358_c2_g1_i1,blat.proc3829875.chain_2139	3	STRG.9728.2	1
scaffold_8	retained_intron	14134530	14135737	-	asmbl_53300,asmbl_53301	none	STRG.10512.2,Trinity_GG_22853_c0_g1_i1,blat.proc3829891.chain_2653,blat.proc3829891.chain_2654	4	STRG.10512.1	1
scaffold_5	retained_intron	10968500	10969203	+	asmbl_44384,asmbl_44385,asmbl_44386	none	STRG.6366.2,blat.proc3829873.chain_2527,blat.proc3829873.chain_2528	3	STRG.6366.1,blat.proc3829873.chain_2526	2
scaffold_7	starts_in_intron	10283463	10283463	+	asmbl_50987	none	Trinity_GG_5105_c0_g1_i2,blat.proc3829875.chain_1645	2	STRG.9194.1,blat.proc3829875.chain_1646	2
scaffold_21	alt_acceptor	2525619	2525620	-	asmbl_27500,asmbl_27501	none	STRG.23870.2,blat.proc3829899.chain_957	2	STRG.23870.1,blat.proc3829899.chain_955	2
scaffold_8	spliced_intron	12692846	12692968	+	asmbl_52317,asmbl_52318,asmbl_52320,asmbl_52321,asmbl_52322	none	STRG.10436.1,STRG.10436.2,blat.proc3829875.chain_2945,blat.proc3829875.chain_2946,blat.proc3829875.chain_2948	5	blat.proc3829875.chain_2949	1
scaffold_3	spliced_intron	17338585	17338883	-	asmbl_39488	none	STRG.3961.2,blat.proc3829887.chain_3740	2	STRG.3961.1,Trinity_GG_19188_c0_g1_i1,blat.proc3829887.chain_3741	3
scaffold_14	ends_in_intron	12148261	12148261	+	asmbl_12398	none	blat.proc3829879.chain_2228	1	STRG.17532.1,blat.proc3829879.chain_2229,blat.proc3829879.chain_2231	3
scaffold_11	spliced_intron	6952172	6952274	-	asmbl_6723,asmbl_6725,asmbl_6726	none	STRG.13710.1,STRG.13710.2,blat.proc3829893.chain_2162,blat.proc3829893.chain_2163,blat.proc3829893.chain_2164	5	STRG.13710.3,blat.proc3829893.chain_2161,blat.proc3829893.chain_2165	3
scaffold_19	alternate_exon	10223282	10223646	+	asmbl_22433	none	STRG.22389.5,blat.proc3829881.chain_3316	2	STRG.22389.3	1
scaffold_4	spliced_intron	4103311	4103635	+	asmbl_42558	none	STRG.4315.1	1	Trinity_GG_2393_c0_g1_i1,blat.proc3829873.chain_653,blat.proc3829873.chain_654,blat.proc3829873.chain_658	4
scaffold_2	alt_donor	4443450	4443451	-	asmbl_23102	none	STRG.1871.1,blat.proc3829887.chain_1740	2	STRG.1871.2	1
scaffold_11	retained_intron	8050351	8050449	+	asmbl_5675	none	STRG.13800.1,Trinity_GG_7571_c0_g2_i2,blat.proc3829877.chain_2230	3	STRG.13800.2,Trinity_GG_7571_c0_g1_i1,blat.proc3829877.chain_2229	3
scaffold_8	ends_in_intron	4288944	4288944	+	asmbl_51813	none	STRG.9898.1	1	STRG.9898.2,blat.proc3829875.chain_2401	2
scaffold_2	ends_in_intron	6087157	6087157	-	asmbl_23198	none	STRG.1980.4,Trinity_GG_18112_c2_g1_i1,blat.proc3829887.chain_1844	3	STRG.1980.1,STRG.1980.3,Trinity_GG_18112_c0_g1_i5,blat.proc3829887.chain_1840,blat.proc3829887.chain_1841	5
scaffold_17	alternate_exon	788052	788272	+	asmbl_17705	none	STRG.19917.2	1	STRG.19917.1	1
scaffold_19	alternate_exon	3549863	3557449	+	asmbl_22130	none	STRG.22033.2	1	Trinity_GG_12191_c0_g1_i4,blat.proc3829881.chain_2996	2
scaffold_6	alternate_exon	2480020	2482637	-	asmbl_48075,asmbl_48077	none	STRG.7236.1,blat.proc3829889.chain_3219,blat.proc3829889.chain_3220	3	STRG.7236.2	1
scaffold_12	alt_donor	12397460	12397461	-	asmbl_8012	none	STRG.15128.2	1	STRG.15128.1,STRG.15128.3,blat.proc3829893.chain_3552	3
scaffold_20	spliced_intron	11599629	11600426	-	asmbl_27092	none	STRG.23657.3	1	STRG.23657.1	1
scaffold_2	alt_donor	17479024	17479025	-	asmbl_23739	none	STRG.2632.1,STRG.2632.2,Trinity_GG_18470_c1_g1_i1,blat.proc3829887.chain_2479	4	STRG.2632.3	1
scaffold_18	retained_intron	2565486	2565566	-	asmbl_19766	none	STRG.21116.2	1	STRG.21116.1,blat.proc3829897.chain_2014	2
scaffold_12	alt_acceptor	10617675	10617676	-	asmbl_7898	none	STRG.15030.3	1	STRG.15030.1,STRG.15030.2,blat.proc3829893.chain_3382	3
scaffold_13	alt_acceptor	7515363	7515364	-	asmbl_9856	none	STRG.16033.1	1	STRG.16033.2	1
scaffold_11	alt_donor	3736373	3736374	-	asmbl_6549	none	STRG.13485.2,blat.proc3829893.chain_1942	2	STRG.13485.1,blat.proc3829893.chain_1941	2
scaffold_26	spliced_intron	9316596	9316754	+	asmbl_35739,asmbl_35741,asmbl_35743,asmbl_35746	none	STRG.28479.1,STRG.28479.2,STRG.28479.3,blat.proc3829885.chain_1518,blat.proc3829885.chain_1519	5	blat.proc3829885.chain_1515,blat.proc3829885.chain_1520	2
scaffold_7	spliced_intron	1233710	1233915	+	asmbl_50468,asmbl_50480	none	STRG.8627.5,STRG.8627.6	2	STRG.8627.2,STRG.8627.8,Trinity_GG_4740_c0_g1_i15,Trinity_GG_4740_c0_g1_i17,Trinity_GG_4740_c0_g1_i21,blat.proc3829875.chain_1046,blat.proc3829875.chain_1047,blat.proc3829875.chain_1052	8
scaffold_28	alt_donor	5611371	5611372	-	asmbl_37623	none	STRG.29674.3,Trinity_GG_33655_c0_g1_i8,blat.proc3829901.chain_2809	3	STRG.29674.2	1
scaffold_10	ends_in_intron	8330178	8330178	-	asmbl_3493	none	blat.proc3829893.chain_1079	1	STRG.12584.2,STRG.12584.3	2
scaffold_27	starts_in_intron	4510104	4510104	+	asmbl_36257	none	STRG.28883.3,blat.proc3829885.chain_2012	2	STRG.28883.1,blat.proc3829885.chain_2011,blat.proc3829885.chain_2014	3
scaffold_14	alternate_exon	6774876	6775029	-	asmbl_13142	none	STRG.17107.1,blat.proc3829895.chain_1744	2	STRG.17107.2,blat.proc3829895.chain_1745	2
scaffold_13	ends_in_intron	9325366	9325366	-	asmbl_9979	none	Trinity_GG_26100_c0_g1_i4,blat.proc3829895.chain_956	2	STRG.16187.4	1
scaffold_6	starts_in_intron	1750578	1750578	-	asmbl_48058,asmbl_48060	none	STRG.7224.2,blat.proc3829889.chain_3169,blat.proc3829889.chain_3173	3	STRG.7224.1,STRG.7224.3,STRG.7224.4,STRG.7224.5,STRG.7224.6,blat.proc3829889.chain_3170,blat.proc3829889.chain_3171,blat.proc3829889.chain_3174	8
scaffold_13	retained_intron	16048795	16048914	+	asmbl_11524	none	STRG.16628.3	1	STRG.16628.1	1
scaffold_5	retained_intron	18561228	18562070	+	asmbl_44920,asmbl_44921	none	STRG.6978.3,STRG.6978.5,Trinity_GG_3847_c0_g1_i3,blat.proc3829873.chain_3149,blat.proc3829873.chain_3150	5	STRG.6978.1,STRG.6978.2,STRG.6978.4,blat.proc3829873.chain_3147	4
scaffold_21	alt_acceptor	7387525	7387526	+	asmbl_28749	none	STRG.24246.2,blat.proc3829883.chain_1381	2	STRG.24246.1,blat.proc3829883.chain_1379	2
scaffold_6	retained_intron	8460449	8460563	+	asmbl_47061	none	STRG.7708.1,blat.proc3829875.chain_73	2	STRG.7708.2,STRG.7708.3,STRG.7708.4,blat.proc3829875.chain_72	4
scaffold_2	alt_acceptor	7827117	7827118	-	asmbl_23306,asmbl_23307	none	STRG.2079.1,Trinity_GG_18172_c0_g1_i2,blat.proc3829887.chain_1978	3	STRG.2079.2,Trinity_GG_18172_c0_g1_i3,blat.proc3829887.chain_1977	3
scaffold_2	spliced_intron	13071028	13071351	-	asmbl_23503,asmbl_23504,asmbl_23505,asmbl_23506,asmbl_23508	none	STRG.2340.1,STRG.2340.2,blat.proc3829887.chain_2256,blat.proc3829887.chain_2257,blat.proc3829887.chain_2259,blat.proc3829887.chain_2260,blat.proc3829887.chain_2262	7	STRG.2340.3,blat.proc3829887.chain_2258	2
scaffold_17	ends_in_intron	12200198	12200198	+	asmbl_18401	none	STRG.20743.5,blat.proc3829881.chain_1579	2	STRG.20743.3,blat.proc3829881.chain_1576	2
scaffold_4	ends_in_intron	4114390	4114390	-	asmbl_41223	none	Trinity_GG_19387_c0_g1_i1,blat.proc3829889.chain_372	2	STRG.4314.1,blat.proc3829889.chain_373,blat.proc3829889.chain_374,blat.proc3829889.chain_375,blat.proc3829889.chain_376,blat.proc3829889.chain_377,blat.proc3829889.chain_378	7
scaffold_14	retained_exon	11573626	11573660	-	asmbl_13480	none	STRG.17490.1,blat.proc3829895.chain_2172,blat.proc3829895.chain_2179	3	STRG.17490.5,blat.proc3829895.chain_2173,blat.proc3829895.chain_2180	3
scaffold_19	retained_intron	3516757	3516831	+	asmbl_22121	none	STRG.22028.1	1	blat.proc3829881.chain_2985	1
scaffold_5	spliced_intron	10969290	10969590	+	asmbl_44383,asmbl_44384	none	STRG.6366.1,STRG.6366.2,blat.proc3829873.chain_2526	3	blat.proc3829873.chain_2527,blat.proc3829873.chain_2528	2
scaffold_9	alt_acceptor	11794319	11794320	-	asmbl_55266	none	STRG.11484.5	1	STRG.11484.2,STRG.11484.3,blat.proc3829891.chain_3591	3
scaffold_20	retained_intron	11078627	11078744	-	asmbl_27058,asmbl_27059	none	blat.proc3829899.chain_625,blat.proc3829899.chain_627	2	STRG.23611.1,blat.proc3829899.chain_622	2
scaffold_423	alt_acceptor	672	673	+	asmbl_43664	none	STRG.30294.2	1	STRG.30294.1	1
scaffold_5	alternate_exon	5608188	5608889	+	asmbl_44019	none	blat.proc3829873.chain_2067	1	STRG.5977.1,blat.proc3829873.chain_2066	2
scaffold_3	spliced_intron	7972688	7972773	+	asmbl_40149	none	STRG.3381.2	1	blat.proc3829871.chain_3495	1
scaffold_5	alt_donor	1247209	1247210	+	asmbl_43782	none	STRG.5682.2	1	STRG.5682.1,blat.proc3829873.chain_1836	2
scaffold_24	alt_acceptor	9088042	9088043	+	asmbl_32504,asmbl_32505,asmbl_32506,asmbl_32508	none	STRG.26930.1,STRG.26930.3,STRG.26930.4,blat.proc3829885.chain_81,blat.proc3829885.chain_82,blat.proc3829885.chain_84	6	STRG.26930.2	1
scaffold_12	alt_acceptor	8891889	8891890	+	asmbl_8801	none	STRG.14881.2	1	STRG.14881.1,STRG.14881.3,Trinity_GG_8240_c0_g1_i1,Trinity_GG_8240_c0_g1_i2,blat.proc3829877.chain_3411,blat.proc3829877.chain_3412	6
scaffold_2	alternate_exon	4069893	4070082	-	asmbl_23075	none	STRG.1852.1,blat.proc3829887.chain_1658	2	STRG.1852.2	1
scaffold_2	retained_intron	1302136	1302291	+	asmbl_24198	none	STRG.1611.2,Trinity_GG_927_c0_g1_i4,blat.proc3829871.chain_1709	3	STRG.1611.3,Trinity_GG_927_c0_g1_i2,blat.proc3829871.chain_1708	3
scaffold_9	spliced_intron	571217	571264	+	asmbl_53752	none	STRG.10779.2	1	STRG.10779.7	1
scaffold_26	alternate_exon	9514061	9514148	+	asmbl_35759	none	STRG.28482.1,blat.proc3829885.chain_1511	2	STRG.28482.2	1
scaffold_8	retained_intron	12693269	12693431	+	asmbl_52323,asmbl_52324	none	blat.proc3829875.chain_2944,blat.proc3829875.chain_2947	2	blat.proc3829875.chain_2945,blat.proc3829875.chain_2946,blat.proc3829875.chain_2948	3
scaffold_12	alt_donor	5566635	5566636	-	asmbl_7635	none	STRG.14699.1,blat.proc3829893.chain_3115	2	STRG.14699.2,blat.proc3829893.chain_3116	2
scaffold_12	retained_intron	12307824	12308257	+	asmbl_8949	none	STRG.15117.3,blat.proc3829877.chain_3595	2	STRG.15117.5	1
scaffold_4	spliced_intron	4691328	4691558	+	asmbl_42627,asmbl_42632,asmbl_42633	none	STRG.4376.1,blat.proc3829873.chain_716,blat.proc3829873.chain_717,blat.proc3829873.chain_718	4	blat.proc3829873.chain_714	1
scaffold_1	spliced_intron	11395793	11396048	+	asmbl_2083,asmbl_2085	none	STRG.746.1,STRG.746.2,blat.proc3829871.chain_766	3	blat.proc3829871.chain_764	1
scaffold_23	ends_in_intron	6858697	6858697	-	asmbl_31705	none	Trinity_GG_31545_c0_g1_i20,blat.proc3829899.chain_3089	2	STRG.26000.2,STRG.26000.3	2
scaffold_19	alternate_exon	13131717	13136433	-	asmbl_21821	none	blat.proc3829897.chain_3401	1	STRG.22621.2,Trinity_GG_29613_c0_g1_i1,blat.proc3829897.chain_3400	3
scaffold_5	alt_donor	10183682	10183683	-	asmbl_45699	none	blat.proc3829889.chain_2400	1	STRG.6308.1	1
scaffold_16	ends_in_intron	8649450	8649450	+	asmbl_17237	none	blat.proc3829881.chain_379	1	STRG.19480.1,STRG.19480.2,STRG.19480.3,blat.proc3829881.chain_374,blat.proc3829881.chain_375,blat.proc3829881.chain_376	6
scaffold_4	retained_intron	13183547	13184043	-	asmbl_41727	none	blat.proc3829889.chain_1035	1	STRG.4963.1,STRG.4963.2,STRG.4963.3,blat.proc3829889.chain_1036,blat.proc3829889.chain_1037,blat.proc3829889.chain_1038	6
scaffold_2	retained_exon	11256406	11256473	+	asmbl_24783,asmbl_24784	none	STRG.2255.2,STRG.2255.3,blat.proc3829871.chain_2294	3	STRG.2255.1,blat.proc3829871.chain_2295	2
scaffold_13	retained_intron	3734461	3734554	+	asmbl_10712	none	STRG.15686.3,Trinity_GG_8631_c0_g1_i8,blat.proc3829879.chain_390	3	STRG.15686.1,STRG.15686.2,blat.proc3829879.chain_389,blat.proc3829879.chain_393,blat.proc3829879.chain_394	5
scaffold_19	alt_donor	6663737	6663738	+	asmbl_22228,asmbl_22229,asmbl_22230	none	STRG.22169.1,STRG.22169.3,STRG.22169.4,blat.proc3829881.chain_3026,blat.proc3829881.chain_3027	5	STRG.22169.2	1
scaffold_14	spliced_intron	15345450	15346208	-	asmbl_13697	none	STRG.17749.3,blat.proc3829895.chain_2514	2	STRG.17749.2,blat.proc3829895.chain_2512	2
scaffold_14	starts_in_intron	8093917	8093917	-	asmbl_13228	none	STRG.17212.1,Trinity_GG_26645_c0_g1_i3,blat.proc3829895.chain_1889	3	STRG.17212.2,STRG.17212.3,STRG.17212.4,Trinity_GG_26645_c0_g1_i1,Trinity_GG_26645_c0_g1_i4,Trinity_GG_26645_c0_g1_i5,blat.proc3829895.chain_1888,blat.proc3829895.chain_1891,blat.proc3829895.chain_1893	9
scaffold_14	alternate_exon	15945962	15946040	+	asmbl_12633,asmbl_12634	none	STRG.17824.1,STRG.17824.2	2	STRG.17824.3	1
scaffold_13	retained_intron	8518137	8518344	+	asmbl_11119	none	Trinity_GG_8862_c0_g1_i2	1	STRG.16113.1,blat.proc3829879.chain_860	2
scaffold_16	ends_in_intron	440300	440300	-	asmbl_16039,asmbl_16042	none	Trinity_GG_27679_c1_g1_i4,blat.proc3829897.chain_28,blat.proc3829897.chain_32	3	STRG.19039.1	1
scaffold_19	spliced_intron	11832215	11832284	+	asmbl_22534	none	Trinity_GG_12455_c0_g1_i1,blat.proc3829881.chain_3461	2	STRG.22496.1,Trinity_GG_12455_c0_g1_i2,blat.proc3829881.chain_3462	3
scaffold_25	retained_exon	5054333	5054386	+	asmbl_33558	none	STRG.27416.1,blat.proc3829885.chain_365	2	STRG.27416.2,blat.proc3829885.chain_366	2
scaffold_1	retained_intron	15880705	15881317	+	asmbl_2432,asmbl_2433	none	STRG.1112.2,Trinity_GG_675_c0_g2_i1,blat.proc3829871.chain_1213	3	STRG.1112.1,Trinity_GG_675_c0_g1_i1,blat.proc3829871.chain_1212	3
scaffold_6	retained_intron	8475432	8475513	-	asmbl_48497	none	STRG.7718.2	1	STRG.7718.1,blat.proc3829889.chain_3710	2
scaffold_28	alternate_exon	2438155	2438393	-	asmbl_37381	none	STRG.29399.2,blat.proc3829901.chain_2479	2	STRG.29399.1,blat.proc3829901.chain_2478	2
scaffold_4	spliced_intron	7267306	7267957	+	asmbl_42818,asmbl_42821	none	STRG.4560.4,STRG.4560.6,Trinity_GG_2542_c0_g1_i3,blat.proc3829873.chain_959	4	STRG.4560.7,Trinity_GG_2542_c0_g1_i2,Trinity_GG_2542_c0_g1_i4,blat.proc3829873.chain_960,blat.proc3829873.chain_961	5
scaffold_18	alt_acceptor	10132499	10132500	+	asmbl_20927	none	STRG.21596.1	1	STRG.21596.2,blat.proc3829881.chain_2566,blat.proc3829881.chain_2567	3
scaffold_1	retained_intron	1992066	1992263	+	asmbl_1520	none	STRG.126.1,Trinity_GG_103_c2_g1_i2,blat.proc3829871.chain_180	3	STRG.126.2	1
scaffold_23	spliced_intron	4167441	4167665	+	asmbl_30792,asmbl_30793	none	STRG.25817.1,STRG.25817.2,blat.proc3829883.chain_2699	3	Trinity_GG_14244_c0_g1_i4,blat.proc3829883.chain_2697,blat.proc3829883.chain_2698	3
scaffold_13	spliced_intron	8683729	8683824	+	asmbl_11124	none	Trinity_GG_8870_c0_g1_i1,blat.proc3829879.chain_880	2	STRG.16120.1,Trinity_GG_8870_c0_g1_i2,Trinity_GG_8870_c0_g1_i3,blat.proc3829879.chain_879,blat.proc3829879.chain_881	5
scaffold_3	starts_in_intron	14451342	14451342	-	asmbl_39323	none	blat.proc3829887.chain_3499,blat.proc3829887.chain_3500	2	STRG.3784.1,blat.proc3829887.chain_3501	2
scaffold_19	spliced_intron	3668736	3668829	-	asmbl_21322,asmbl_21323,asmbl_21324,asmbl_21326,asmbl_21329	none	STRG.22034.1,STRG.22034.2,STRG.22034.3,STRG.22034.4,Trinity_GG_29269_c0_g1_i1,Trinity_GG_29269_c0_g1_i2,Trinity_GG_29269_c0_g1_i5,Trinity_GG_29269_c0_g1_i6,blat.proc3829897.chain_2739,blat.proc3829897.chain_2743,blat.proc3829897.chain_2744,blat.proc3829897.chain_2745	12	Trinity_GG_29269_c0_g1_i7,blat.proc3829897.chain_2740,blat.proc3829897.chain_2742	3
scaffold_9	alt_donor	11889099	11889100	+	asmbl_54376	none	blat.proc3829877.chain_291	1	STRG.11505.1,STRG.11505.2	2
scaffold_18	starts_in_intron	7745737	7745737	+	asmbl_20814	none	blat.proc3829881.chain_2390	1	STRG.21471.1,blat.proc3829881.chain_2388,blat.proc3829881.chain_2389	3
scaffold_25	spliced_intron	4810463	4810690	+	asmbl_33528,asmbl_33530	none	STRG.27400.2,Trinity_GG_15078_c0_g1_i1,Trinity_GG_15078_c0_g1_i5,blat.proc3829885.chain_376,blat.proc3829885.chain_377	5	blat.proc3829885.chain_374	1
scaffold_8	starts_in_intron	15336540	15336540	+	asmbl_52394	none	Trinity_GG_5865_c0_g1_i3,blat.proc3829875.chain_3037	2	STRG.10550.1,STRG.10550.2,blat.proc3829875.chain_3039,blat.proc3829875.chain_3040	4
scaffold_12	alternate_exon	14131622	14131689	+	asmbl_9021	none	STRG.15226.3	1	STRG.15226.1,STRG.15226.2,blat.proc3829877.chain_3679	3
scaffold_24	spliced_intron	1035334	1035594	+	asmbl_32068	none	STRG.26358.1,blat.proc3829883.chain_3303	2	Trinity_GG_14587_c1_g1_i1,blat.proc3829883.chain_3304	2
scaffold_5	ends_in_intron	9717939	9717939	+	asmbl_44301	none	blat.proc3829873.chain_2443	1	STRG.6280.1,STRG.6280.2,blat.proc3829873.chain_2444,blat.proc3829873.chain_2445	4
scaffold_20	retained_exon	8018476	8018855	-	asmbl_26876	none	STRG.23343.2,blat.proc3829899.chain_386	2	STRG.23343.1	1
scaffold_13	starts_in_intron	2335635	2335635	+	asmbl_10574	none	STRG.15543.10	1	STRG.15543.3,STRG.15543.4,STRG.15543.6,STRG.15543.7,STRG.15543.9	5
scaffold_3	alternate_exon	11640409	11640517	+	asmbl_40319	none	STRG.3593.2	1	STRG.3593.1,blat.proc3829873.chain_14,blat.proc3829873.chain_15	3
scaffold_20	starts_in_intron	5948891	5948891	-	asmbl_26721	none	blat.proc3829899.chain_159	1	STRG.23191.1,blat.proc3829899.chain_160,blat.proc3829899.chain_161,blat.proc3829899.chain_163	4
scaffold_12	retained_intron	5636130	5637493	-	asmbl_7648	none	blat.proc3829893.chain_3065	1	STRG.14701.1,blat.proc3829893.chain_3066	2
scaffold_9	alt_acceptor	9470289	9470290	-	asmbl_55145,asmbl_55149,asmbl_55150	none	STRG.11298.2,STRG.11298.3,blat.proc3829891.chain_3464	3	STRG.11298.1,blat.proc3829891.chain_3465,blat.proc3829891.chain_3466,blat.proc3829891.chain_3467	4
scaffold_6	ends_in_intron	12006474	12006474	+	asmbl_47303,asmbl_47304	none	STRG.7963.2,STRG.7963.3,blat.proc3829875.chain_237	3	STRG.7963.1	1
scaffold_21	starts_in_intron	3113588	3113588	-	asmbl_27535	none	blat.proc3829899.chain_984	1	STRG.23925.1,blat.proc3829899.chain_985,blat.proc3829899.chain_986	3
scaffold_8	alt_acceptor	11110924	11110925	+	asmbl_52186	none	STRG.10317.2,blat.proc3829875.chain_2834	2	STRG.10317.1,blat.proc3829875.chain_2832	2
scaffold_15	retained_exon	15189129	15189219	+	asmbl_14675,asmbl_14676,asmbl_14677,asmbl_14679,asmbl_14682,asmbl_14683,asmbl_14684,asmbl_14688	none	STRG.18906.1,blat.proc3829879.chain_3471,blat.proc3829879.chain_3474,blat.proc3829879.chain_3475,blat.proc3829879.chain_3476,blat.proc3829879.chain_3479,blat.proc3829879.chain_3481,blat.proc3829879.chain_3482,blat.proc3829879.chain_3484	9	STRG.18906.2,blat.proc3829879.chain_3473,blat.proc3829879.chain_3487	3
scaffold_1	starts_in_intron	7096014	7096014	-	asmbl_419	none	STRG.501.2	1	STRG.501.1,blat.proc3829887.chain_344	2
scaffold_7	retained_intron	4936495	4936637	+	asmbl_50660,asmbl_50663	none	blat.proc3829875.chain_1275,blat.proc3829875.chain_1281	2	STRG.8834.1,STRG.8834.2,STRG.8834.3,STRG.8834.4,blat.proc3829875.chain_1276,blat.proc3829875.chain_1277,blat.proc3829875.chain_1278,blat.proc3829875.chain_1279,blat.proc3829875.chain_1282,blat.proc3829875.chain_1283	10
scaffold_1	alt_acceptor	10504999	10505000	+	asmbl_2001	none	STRG.683.2	1	STRG.683.1,blat.proc3829871.chain_637	2
scaffold_7	skipped_exon	18393089	18394633	-	asmbl_50288,asmbl_50294,asmbl_50295,asmbl_50298	none	STRG.9659.1,STRG.9659.3,STRG.9659.5,Trinity_GG_22427_c0_g1_i10,blat.proc3829891.chain_1868,blat.proc3829891.chain_1870	6	Trinity_GG_22427_c0_g1_i11,blat.proc3829891.chain_1869,blat.proc3829891.chain_1875	3
scaffold_26	retained_intron	9316247	9316445	+	asmbl_35737,asmbl_35738,asmbl_35740,asmbl_35743	none	blat.proc3829885.chain_1518,blat.proc3829885.chain_1520	2	STRG.28479.1,STRG.28479.2,STRG.28479.3,blat.proc3829885.chain_1515,blat.proc3829885.chain_1519	5
scaffold_14	alt_donor	7446963	7446964	+	asmbl_12142	none	STRG.17170.2,blat.proc3829879.chain_1841	2	STRG.17170.1,blat.proc3829879.chain_1840	2
scaffold_15	starts_in_intron	11302216	11302216	+	asmbl_14440	none	blat.proc3829879.chain_3185	1	STRG.18591.1,blat.proc3829879.chain_3184,blat.proc3829879.chain_3187	3
scaffold_7	retained_intron	13866546	13867075	-	asmbl_50137	none	STRG.9469.2,blat.proc3829891.chain_1675	2	blat.proc3829891.chain_1673	1
scaffold_13	spliced_intron	9254576	9254748	+	asmbl_11170	none	STRG.16172.1,Trinity_GG_8857_c1_g1_i4,blat.proc3829879.chain_848	3	Trinity_GG_8857_c1_g1_i3,blat.proc3829879.chain_847	2
scaffold_1	retained_exon	6299550	6299654	-	asmbl_357	none	STRG.424.5	1	STRG.424.4	1
scaffold_6	alternate_exon	2923570	2927678	-	asmbl_48141,asmbl_48142	none	STRG.7290.2,Trinity_GG_21059_c1_g1_i1,blat.proc3829889.chain_3236,blat.proc3829889.chain_3237,blat.proc3829889.chain_3238	5	blat.proc3829889.chain_3233	1
scaffold_22	starts_in_intron	4357514	4357514	+	asmbl_29279	none	STRG.24841.3,blat.proc3829883.chain_1880	2	STRG.24841.1,STRG.24841.2,blat.proc3829883.chain_1877,blat.proc3829883.chain_1879,blat.proc3829883.chain_1882	5
scaffold_723	alternate_exon	2667	4808	-	asmbl_51574	none	STRG.30418.2	1	blat.proc3829901.chain_3465	1
scaffold_10	spliced_intron	8916906	8917220	+	asmbl_4617,asmbl_4618,asmbl_4620	none	STRG.12631.1,STRG.12631.2,blat.proc3829877.chain_1154,blat.proc3829877.chain_1156,blat.proc3829877.chain_1157	5	blat.proc3829877.chain_1155	1
scaffold_5	starts_in_intron	5027738	5027738	-	asmbl_45410	none	blat.proc3829891.chain_1998	1	STRG.5947.1,blat.proc3829889.chain_2013,blat.proc3829891.chain_1997	3
scaffold_1950	alt_acceptor	1067	1068	-	asmbl_22789	none	STRG.30656.1	1	STRG.30656.2	1
scaffold_9	spliced_intron	15384227	15384899	+	asmbl_54538,asmbl_54539,asmbl_54542	none	STRG.11728.2,blat.proc3829877.chain_488,blat.proc3829877.chain_489,blat.proc3829877.chain_491	4	blat.proc3829877.chain_492	1
scaffold_6	spliced_intron	4962197	4962323	-	asmbl_48317	none	blat.proc3829889.chain_3481	1	blat.proc3829889.chain_3477	1
scaffold_6	ends_in_intron	18626354	18626354	+	asmbl_47774	none	blat.proc3829875.chain_917	1	STRG.8522.1,blat.proc3829875.chain_918	2
scaffold_10	skipped_exon	9003426	9004229	+	asmbl_4630	none	STRG.12637.3	1	STRG.12637.1,STRG.12637.2,blat.proc3829877.chain_1127,blat.proc3829877.chain_1128	4
scaffold_3	ends_in_intron	14309782	14309782	-	asmbl_39298,asmbl_39300	none	STRG.3768.2,STRG.3768.3,Trinity_GG_19099_c0_g1_i4,blat.proc3829887.chain_3566	4	STRG.3768.1	1
scaffold_10	retained_exon	10641909	10642036	-	asmbl_3657	none	STRG.12752.1	1	STRG.12752.2	1
scaffold_11	alt_acceptor	2839517	2839518	+	asmbl_5344,asmbl_5345	none	STRG.13415.2,STRG.13415.3,Trinity_GG_7336_c0_g1_i1,blat.proc3829877.chain_1840	4	STRG.13415.1,Trinity_GG_7336_c0_g1_i2,blat.proc3829877.chain_1839	3
scaffold_6	starts_in_intron	11498178	11498178	+	asmbl_47274	none	Trinity_GG_4344_c0_g2_i1,blat.proc3829875.chain_312	2	STRG.7940.1,Trinity_GG_4344_c0_g2_i3,blat.proc3829875.chain_310	3
scaffold_4	skipped_exon	16538973	16540857	-	asmbl_41943,asmbl_41944	none	STRG.5232.2,blat.proc3829889.chain_1285	2	STRG.5232.1,blat.proc3829889.chain_1286	2
scaffold_7	starts_in_intron	15227656	15227656	+	asmbl_51298	none	blat.proc3829875.chain_1990	1	STRG.9528.1,blat.proc3829875.chain_1991	2
scaffold_5	skipped_exon	15681367	15683372	+	asmbl_44670	none	blat.proc3829873.chain_2842	1	STRG.6754.1,blat.proc3829873.chain_2839,blat.proc3829873.chain_2840	3
scaffold_1	alt_acceptor	12174681	12174682	+	asmbl_2172,asmbl_2174	none	STRG.846.2,STRG.846.4,blat.proc3829871.chain_923,blat.proc3829871.chain_927	4	STRG.846.1,STRG.846.3,blat.proc3829871.chain_925,blat.proc3829871.chain_926	4
scaffold_9	alternate_exon	12336347	12336631	-	asmbl_55336	none	STRG.11544.2	1	STRG.11544.1	1
scaffold_1	skipped_exon	14363017	14365198	-	asmbl_915	none	STRG.1033.3	1	STRG.1033.2,blat.proc3829887.chain_884	2
scaffold_8	alt_acceptor	16401106	16401107	-	asmbl_53389,asmbl_53390,asmbl_53394,asmbl_53395,asmbl_53397,asmbl_53398	none	STRG.10619.1,STRG.10619.2,blat.proc3829891.chain_2683,blat.proc3829891.chain_2684,blat.proc3829891.chain_2686,blat.proc3829891.chain_2687,blat.proc3829891.chain_2689,blat.proc3829891.chain_2691	8	blat.proc3829891.chain_2685,blat.proc3829891.chain_2688	2
scaffold_5	alt_acceptor	18703047	18703048	-	asmbl_46234	none	STRG.6989.1	1	STRG.6989.2	1
scaffold_17	retained_intron	14546213	14546320	+	asmbl_18528	none	STRG.20918.2,Trinity_GG_11505_c0_g1_i1,Trinity_GG_11505_c0_g1_i2,blat.proc3829881.chain_1765	4	STRG.20918.4	1
scaffold_8	spliced_intron	16099356	16100916	-	asmbl_53367	none	STRG.10586.2	1	STRG.10586.1,blat.proc3829891.chain_2665	2
scaffold_14	ends_in_intron	326764	326764	-	asmbl_12802	none	Trinity_GG_26365_c0_g1_i3,blat.proc3829895.chain_1416	2	STRG.16713.1,STRG.16713.2,Trinity_GG_26365_c0_g1_i2,blat.proc3829895.chain_1417	4
scaffold_11	alternate_exon	6249974	6258655	+	asmbl_5587,asmbl_5589	none	STRG.13670.1,STRG.13670.2,blat.proc3829877.chain_2180	3	STRG.13670.5	1
scaffold_19	spliced_intron	13011394	13011749	-	asmbl_21794,asmbl_21797,asmbl_21798,asmbl_21800	none	STRG.22610.1,STRG.22610.2,STRG.22610.3,blat.proc3829897.chain_3402,blat.proc3829897.chain_3404	5	STRG.22610.4	1
scaffold_8	retained_intron	18248240	18248534	-	asmbl_53533,asmbl_53536,asmbl_53537,asmbl_53538	none	STRG.10723.4,blat.proc3829891.chain_2922,blat.proc3829891.chain_2923,blat.proc3829891.chain_2924	4	STRG.10723.3	1
scaffold_2	spliced_intron	948733	948885	+	asmbl_24188,asmbl_24189	none	STRG.1574.2,STRG.1574.3,blat.proc3829871.chain_1649	3	STRG.1574.1,blat.proc3829871.chain_1645	2
scaffold_8	retained_intron	4299829	4300052	+	asmbl_51816	none	blat.proc3829875.chain_2431	1	STRG.9902.1,blat.proc3829875.chain_2433	2
scaffold_2	alternate_exon	18951171	18951626	+	asmbl_25286	none	STRG.2768.2,Trinity_GG_1522_c0_g1_i1,Trinity_GG_1522_c0_g1_i7	3	STRG.2768.1,STRG.2768.3,Trinity_GG_1522_c0_g1_i2	3
scaffold_15	skipped_exon	15855759	15857174	+	asmbl_14773,asmbl_14775,asmbl_14776	none	STRG.18964.1,STRG.18964.3,STRG.18964.5,Trinity_GG_10383_c0_g1_i7,blat.proc3829879.chain_3538,blat.proc3829879.chain_3540	6	STRG.18964.2,STRG.18964.4,STRG.18964.6,Trinity_GG_10383_c0_g1_i2,Trinity_GG_10383_c0_g1_i3,Trinity_GG_10383_c0_g1_i8,blat.proc3829879.chain_3539,blat.proc3829879.chain_3541,blat.proc3829879.chain_3542,blat.proc3829879.chain_3544	10
scaffold_1	alt_donor	15888475	15888476	+	asmbl_2438	none	STRG.1117.3	1	STRG.1117.1,Trinity_GG_643_c0_g1_i1,Trinity_GG_643_c0_g1_i2,blat.proc3829871.chain_1170,blat.proc3829871.chain_1171	5
scaffold_25	alt_donor	3612860	3612861	-	asmbl_34124,asmbl_34126	none	STRG.27287.1,blat.proc3829901.chain_601,blat.proc3829901.chain_602	3	STRG.27287.2	1
scaffold_12	alt_acceptor	11383589	11383590	-	asmbl_7945	none	STRG.15059.1	1	STRG.15059.2	1
scaffold_25	alt_donor	7338367	7338368	+	asmbl_33664	none	STRG.27571.2,blat.proc3829885.chain_598	2	STRG.27571.1,STRG.27571.3,Trinity_GG_15205_c0_g1_i3,blat.proc3829885.chain_597	4
scaffold_28	retained_intron	5358871	5358960	-	asmbl_37610	none	STRG.29661.2	1	STRG.29661.1,blat.proc3829901.chain_2785	2
scaffold_11	retained_intron	6251734	6252621	+	asmbl_5583	none	STRG.13670.3,Trinity_GG_7547_c0_g1_i1,blat.proc3829877.chain_2182	3	STRG.13670.2,Trinity_GG_7547_c0_g1_i2,Trinity_GG_7547_c0_g1_i9,blat.proc3829877.chain_2179,blat.proc3829877.chain_2183	5
scaffold_12	retained_intron	15048311	15048677	+	asmbl_9070	none	blat.proc3829877.chain_3721	1	STRG.15289.1,Trinity_GG_8411_c0_g1_i1,blat.proc3829877.chain_3720	3
scaffold_9	skipped_exon	3149490	3150174	+	asmbl_53858	none	STRG.10922.2,Trinity_GG_6075_c0_g1_i1,blat.proc3829875.chain_3397	3	STRG.10922.1,blat.proc3829875.chain_3396	2
scaffold_6	alt_donor	837955	837956	+	asmbl_46632	none	STRG.7136.2	1	STRG.7136.1,Trinity_GG_3883_c0_g1_i1,blat.proc3829873.chain_3198	3
scaffold_1	spliced_intron	3679992	3680248	+	asmbl_1623	none	STRG.237.2,blat.proc3829871.chain_291	2	blat.proc3829871.chain_294	1
scaffold_3	spliced_intron	14424172	14424368	+	asmbl_40481,asmbl_40483	none	STRG.3785.1,STRG.3785.2,Trinity_GG_2146_c0_g1_i2,Trinity_GG_2146_c0_g1_i3,blat.proc3829873.chain_229,blat.proc3829873.chain_230	6	STRG.3785.3,Trinity_GG_2146_c0_g1_i5,blat.proc3829873.chain_231	3
scaffold_8	starts_in_intron	11272893	11272893	+	asmbl_52202	none	STRG.10338.2	1	STRG.10338.1,Trinity_GG_5734_c0_g1_i2,blat.proc3829875.chain_2817	3
scaffold_11	retained_intron	13541271	13541378	+	asmbl_6038,asmbl_6039	none	STRG.14199.2,Trinity_GG_7827_c0_g1_i1,blat.proc3829877.chain_2687	3	STRG.14199.1,Trinity_GG_7827_c0_g1_i2,blat.proc3829877.chain_2686	3
scaffold_2	retained_exon	6512443	6512496	-	asmbl_23237	none	STRG.2013.3	1	STRG.2013.1,STRG.2013.2,blat.proc3829887.chain_1931,blat.proc3829887.chain_1932	4
scaffold_2	skipped_exon	11603158	11605993	+	asmbl_24794,asmbl_24795,asmbl_24796	none	STRG.2273.1,STRG.2273.2,STRG.2273.3,blat.proc3829871.chain_2298,blat.proc3829871.chain_2300,blat.proc3829871.chain_2301,blat.proc3829871.chain_2303	7	blat.proc3829871.chain_2297,blat.proc3829871.chain_2299,blat.proc3829871.chain_2302	3
scaffold_20	starts_in_intron	9620861	9620861	-	asmbl_26973	none	blat.proc3829899.chain_452	1	STRG.23487.1,blat.proc3829899.chain_455	2
scaffold_1	retained_intron	12407161	12407709	+	asmbl_2194	none	Trinity_GG_482_c0_g1_i1,blat.proc3829871.chain_854	2	STRG.851.1,STRG.851.2,Trinity_GG_482_c0_g1_i2,Trinity_GG_482_c0_g1_i3,Trinity_GG_482_c0_g1_i4,blat.proc3829871.chain_855,blat.proc3829871.chain_856,blat.proc3829871.chain_857	8
scaffold_17	retained_intron	9531029	9531393	+	asmbl_18228,asmbl_18234	none	STRG.20566.3,blat.proc3829881.chain_1347,blat.proc3829881.chain_1348,blat.proc3829881.chain_1354	4	STRG.20566.1,Trinity_GG_11250_c0_g1_i1,blat.proc3829881.chain_1355	3
scaffold_13	spliced_intron	6398067	6398296	+	asmbl_10907,asmbl_10908,asmbl_10909,asmbl_10910,asmbl_10911,asmbl_10912,asmbl_10913,asmbl_10915,asmbl_10916	none	STRG.15914.1,STRG.15914.2,STRG.15914.3,STRG.15914.4,STRG.15914.5,Trinity_GG_8718_c0_g1_i1,Trinity_GG_8718_c0_g1_i2,Trinity_GG_8718_c0_g1_i3,Trinity_GG_8718_c0_g1_i4,Trinity_GG_8718_c0_g1_i5,Trinity_GG_8718_c0_g1_i8,Trinity_GG_8718_c0_g1_i9,blat.proc3829879.chain_549,blat.proc3829879.chain_550,blat.proc3829879.chain_552,blat.proc3829879.chain_554,blat.proc3829879.chain_555,blat.proc3829879.chain_556,blat.proc3829879.chain_557	19	blat.proc3829879.chain_551	1
scaffold_3	alternate_exon	16146522	16146714	-	asmbl_39435	none	STRG.3900.2,blat.proc3829887.chain_3731	2	STRG.3900.3,blat.proc3829887.chain_3730	2
scaffold_23	starts_in_intron	359331	359331	-	asmbl_31309	none	Trinity_GG_31299_c0_g1_i7,blat.proc3829899.chain_2651	2	STRG.25543.1,STRG.25543.3,STRG.25543.4,STRG.25543.5,Trinity_GG_31299_c0_g1_i4,blat.proc3829899.chain_2649,blat.proc3829899.chain_2650,blat.proc3829899.chain_2652,blat.proc3829899.chain_2653,blat.proc3829899.chain_2654,blat.proc3829899.chain_2655,blat.proc3829899.chain_2656	12
scaffold_7	spliced_intron	1235897	1236296	+	asmbl_50472,asmbl_50477	none	STRG.8627.7,Trinity_GG_4740_c0_g1_i20,blat.proc3829875.chain_1050	3	STRG.8627.2,STRG.8627.5,STRG.8627.6,Trinity_GG_4740_c0_g1_i13,Trinity_GG_4740_c0_g1_i14,Trinity_GG_4740_c0_g1_i16,blat.proc3829875.chain_1042,blat.proc3829875.chain_1043,blat.proc3829875.chain_1044,blat.proc3829875.chain_1045,blat.proc3829875.chain_1048,blat.proc3829875.chain_1049	12
scaffold_3	spliced_intron	16038460	16038558	+	asmbl_40559	none	STRG.3883.1,blat.proc3829873.chain_249,blat.proc3829873.chain_250	3	STRG.3883.2	1
scaffold_17	retained_intron	1087302	1087367	-	asmbl_18717	none	blat.proc3829897.chain_833	1	STRG.19938.1	1
scaffold_14	starts_in_intron	9271991	9271991	-	asmbl_13351	none	blat.proc3829895.chain_2000	1	STRG.17323.1,STRG.17323.2,STRG.17323.3,STRG.17323.4,blat.proc3829895.chain_1999	5
scaffold_23	alt_acceptor	4503352	4503353	+	asmbl_30820	none	STRG.25848.2,Trinity_GG_14221_c0_g1_i2,blat.proc3829883.chain_2665	3	STRG.25848.1,Trinity_GG_14221_c0_g1_i1,blat.proc3829883.chain_2664	3
scaffold_16	skipped_exon	6143876	6144400	+	asmbl_17069,asmbl_17076,asmbl_17077	none	STRG.19342.1,STRG.19342.3,STRG.19342.4	3	STRG.19342.2,blat.proc3829881.chain_208,blat.proc3829881.chain_209,blat.proc3829881.chain_210,blat.proc3829881.chain_212,blat.proc3829881.chain_214	6
scaffold_13	retained_intron	16460089	16460350	-	asmbl_10277	none	STRG.16689.2,blat.proc3829895.chain_1356	2	STRG.16689.3,blat.proc3829895.chain_1357	2
scaffold_1	spliced_intron	14273795	14273994	+	asmbl_2342,asmbl_2343	none	STRG.1020.1,STRG.1020.2,blat.proc3829871.chain_1117,blat.proc3829871.chain_1118	4	blat.proc3829871.chain_1119	1
scaffold_3	retained_intron	13988803	13989079	+	asmbl_40436	none	STRG.3741.2,Trinity_GG_2070_c0_g1_i4,blat.proc3829873.chain_87	3	STRG.3741.1,STRG.3741.5,Trinity_GG_2070_c0_g1_i2,blat.proc3829873.chain_86	4
scaffold_6	alt_acceptor	17886620	17886621	+	asmbl_47736,asmbl_47738	none	STRG.8475.3,Trinity_GG_4642_c0_g1_i1,Trinity_GG_4642_c0_g1_i3,blat.proc3829875.chain_827,blat.proc3829875.chain_829	5	STRG.8475.2,Trinity_GG_4642_c0_g1_i2,Trinity_GG_4642_c0_g1_i4,blat.proc3829875.chain_830,blat.proc3829875.chain_832	5
scaffold_20	starts_in_intron	10519625	10519625	-	asmbl_27034	none	Trinity_GG_30119_c0_g1_i4,blat.proc3829899.chain_521	2	STRG.23576.1,STRG.23576.2,blat.proc3829899.chain_520,blat.proc3829899.chain_522	4
scaffold_3	skipped_exon	17366201	17366613	-	asmbl_39495,asmbl_39502,asmbl_39503	none	STRG.3972.3,STRG.3972.4,blat.proc3829889.chain_23	3	STRG.3972.1,blat.proc3829889.chain_22,blat.proc3829889.chain_24,blat.proc3829889.chain_27,blat.proc3829889.chain_29	5
scaffold_11	starts_in_intron	11939913	11939913	-	asmbl_7032	none	Trinity_GG_24916_c8_g1_i1	1	STRG.14160.1,STRG.14160.2,STRG.14160.3,STRG.14160.4,STRG.14160.5	5
scaffold_9	alt_acceptor	11889190	11889191	+	asmbl_54376	none	blat.proc3829877.chain_291	1	STRG.11505.1,STRG.11505.2	2
scaffold_20	retained_exon	7195820	7196432	+	asmbl_25860	none	STRG.23278.1	1	STRG.23278.2,blat.proc3829883.chain_407,blat.proc3829883.chain_408	3
scaffold_10	alt_acceptor	9102064	9102065	-	asmbl_3586	none	STRG.12651.1	1	STRG.12651.2,blat.proc3829893.chain_1161	2
scaffold_10	alternate_exon	17058748	17058889	-	asmbl_3927	none	STRG.13142.4,blat.proc3829893.chain_1570	2	STRG.13142.3	1
scaffold_16	alt_acceptor	311989	311990	-	asmbl_16020,asmbl_16021,asmbl_16022,asmbl_16023	none	STRG.19011.1,STRG.19011.2,STRG.19011.3,STRG.19011.4,blat.proc3829897.chain_57	5	blat.proc3829897.chain_56	1
scaffold_11	retained_intron	8478872	8479288	+	asmbl_5749	none	STRG.13851.3,blat.proc3829877.chain_2361	2	STRG.13851.1,Trinity_GG_7647_c0_g1_i4,Trinity_GG_7647_c0_g1_i5,blat.proc3829877.chain_2359,blat.proc3829877.chain_2362	5
scaffold_3	ends_in_intron	14588165	14588165	-	asmbl_39353	none	Trinity_GG_19129_c0_g1_i2,blat.proc3829887.chain_3648	2	STRG.3802.1,STRG.3802.2,blat.proc3829887.chain_3646,blat.proc3829887.chain_3647	4
scaffold_9	ends_in_intron	10924641	10924641	+	asmbl_54299	none	Trinity_GG_6357_c0_g1_i3,blat.proc3829877.chain_182	2	STRG.11392.1	1
scaffold_1	alt_acceptor	18275995	18275996	+	asmbl_2531	none	STRG.1274.2	1	STRG.1274.1,blat.proc3829871.chain_1313	2
scaffold_21	ends_in_intron	7325092	7325092	-	asmbl_27822	none	Trinity_GG_30536_c0_g1_i2,blat.proc3829899.chain_1323	2	STRG.24243.1,blat.proc3829899.chain_1322,blat.proc3829899.chain_1324,blat.proc3829899.chain_1325	4
scaffold_19	skipped_exon	3684104	3684940	+	asmbl_22132,asmbl_22136,asmbl_22137	none	STRG.22046.1,STRG.22046.6,STRG.22046.7	3	STRG.22046.2,STRG.22046.3,STRG.22046.4,blat.proc3829881.chain_3004	4
scaffold_20	alternate_exon	5481292	5486032	-	asmbl_26683	none	STRG.23158.1,blat.proc3829899.chain_183	2	STRG.23158.2,Trinity_GG_29929_c0_g1_i4,blat.proc3829899.chain_185	3
scaffold_13	spliced_intron	3352875	3353012	-	asmbl_9495	none	STRG.15631.1,blat.proc3829895.chain_390	2	blat.proc3829895.chain_389	1
scaffold_27	alt_donor	1008204	1008205	-	asmbl_36687	none	STRG.28578.1,Trinity_GG_32994_c0_g1_i1,blat.proc3829901.chain_1769	3	STRG.28578.2	1
scaffold_25	alt_acceptor	337823	337824	+	asmbl_33318	none	STRG.27057.1	1	STRG.27057.2	1
scaffold_18	alternate_exon	1602540	1602778	+	asmbl_20390	none	STRG.21031.2,blat.proc3829881.chain_1910,blat.proc3829881.chain_1912	3	STRG.21031.1,blat.proc3829881.chain_1913	2
scaffold_18	retained_intron	1899809	1900625	-	asmbl_19691,asmbl_19693,asmbl_19702,asmbl_19705	none	STRG.21072.6,STRG.21072.7,STRG.21072.8,blat.proc3829897.chain_1899	4	STRG.21072.10,STRG.21072.2,STRG.21072.3,STRG.21072.4,STRG.21072.9,blat.proc3829897.chain_1890,blat.proc3829897.chain_1892,blat.proc3829897.chain_1897,blat.proc3829897.chain_1898,blat.proc3829897.chain_1900,blat.proc3829897.chain_1901,blat.proc3829897.chain_1902	12
scaffold_22	alt_acceptor	2404538	2404539	+	asmbl_29232,asmbl_29233	none	STRG.24765.1,STRG.24765.2,blat.proc3829883.chain_1762	3	blat.proc3829883.chain_1763	1
scaffold_5	alt_acceptor	19029108	19029109	-	asmbl_46259,asmbl_46260,asmbl_46265,asmbl_46267	none	STRG.7018.1,STRG.7018.3,STRG.7018.4,blat.proc3829889.chain_3006,blat.proc3829889.chain_3008,blat.proc3829889.chain_3009	6	STRG.7018.5,blat.proc3829889.chain_3003	2
scaffold_10	alt_acceptor	14699982	14699983	+	asmbl_4927,asmbl_4929	none	STRG.13011.2,blat.proc3829877.chain_1497,blat.proc3829877.chain_1501	3	STRG.13011.1,blat.proc3829877.chain_1498,blat.proc3829877.chain_1499,blat.proc3829877.chain_1500	4
scaffold_1	retained_intron	12338031	12338333	-	asmbl_711,asmbl_715,asmbl_716,asmbl_718	none	blat.proc3829887.chain_734,blat.proc3829887.chain_735,blat.proc3829887.chain_737,blat.proc3829887.chain_743	4	STRG.843.1,STRG.843.2,blat.proc3829887.chain_736,blat.proc3829887.chain_738,blat.proc3829887.chain_739,blat.proc3829887.chain_741,blat.proc3829887.chain_742,blat.proc3829887.chain_745,blat.proc3829887.chain_746	9
scaffold_6	starts_in_intron	2925974	2925974	-	asmbl_48139	none	STRG.7290.1,blat.proc3829889.chain_3234	2	STRG.7290.2,STRG.7290.3,STRG.7290.4,blat.proc3829889.chain_3235,blat.proc3829889.chain_3236,blat.proc3829889.chain_3237	6
scaffold_13	alternate_exon	10229528	10241964	-	asmbl_10014,asmbl_10016	none	STRG.16243.1,STRG.16243.3,blat.proc3829895.chain_977	3	STRG.16243.2,blat.proc3829895.chain_976	2
scaffold_4	alt_donor	10982399	10982400	+	asmbl_43029	none	STRG.4820.2	1	STRG.4820.1,blat.proc3829873.chain_1180	2
scaffold_2	spliced_intron	7220195	7220310	+	asmbl_24580,asmbl_24581	none	STRG.2054.1,Trinity_GG_1174_c0_g1_i2,blat.proc3829871.chain_2153	3	STRG.2054.5,STRG.2054.6,Trinity_GG_1174_c0_g1_i12,Trinity_GG_1174_c0_g1_i13,blat.proc3829871.chain_2145,blat.proc3829871.chain_2150,blat.proc3829871.chain_2152	7
scaffold_7	alt_acceptor	9857451	9857452	-	asmbl_49905,asmbl_49906,asmbl_49907	none	STRG.9178.1,blat.proc3829891.chain_1417,blat.proc3829891.chain_1418,blat.proc3829891.chain_1419	4	STRG.9178.2,blat.proc3829891.chain_1420	2
scaffold_4	retained_intron	4095323	4095811	+	asmbl_42546,asmbl_42552,asmbl_42553	none	STRG.4313.2,blat.proc3829873.chain_632,blat.proc3829873.chain_634	3	STRG.4313.4,blat.proc3829873.chain_631	2
scaffold_3	alt_donor	2951793	2951794	+	asmbl_39883	none	STRG.3052.2	1	STRG.3052.1	1
scaffold_12	retained_exon	1056071	1056127	+	asmbl_8419	none	STRG.14436.3	1	STRG.14436.1,STRG.14436.4,blat.proc3829877.chain_2886	3
scaffold_5	spliced_intron	1162909	1162938	+	asmbl_43780	none	STRG.5660.1	1	STRG.5660.2	1
scaffold_27	retained_intron	7522152	7522244	+	asmbl_36422	none	STRG.29096.3	1	STRG.29096.4	1
scaffold_2	retained_intron	8322079	8322426	+	asmbl_24674	none	Trinity_GG_1216_c0_g1_i3,blat.proc3829871.chain_2267	2	STRG.2126.1,STRG.2126.2,blat.proc3829871.chain_2265,blat.proc3829871.chain_2266	4
scaffold_14	alt_donor	15565493	15565494	+	asmbl_12607	none	STRG.17784.2	1	STRG.17784.3,blat.proc3829879.chain_2468	2
scaffold_14	spliced_intron	583074	583762	+	asmbl_11742,asmbl_11745	none	STRG.16728.3,Trinity_GG_9217_c0_g1_i7,blat.proc3829879.chain_1458	3	STRG.16728.1,Trinity_GG_9217_c0_g1_i3,blat.proc3829879.chain_1457	3
scaffold_3	spliced_intron	5774678	5774814	-	asmbl_38817,asmbl_38819	none	STRG.3244.4,blat.proc3829887.chain_2961	2	STRG.3244.1,STRG.3244.2,STRG.3244.3,blat.proc3829887.chain_2960,blat.proc3829887.chain_2962	5
scaffold_26	alt_donor	5862691	5862692	+	asmbl_35575	none	STRG.28276.1,blat.proc3829885.chain_1301	2	blat.proc3829885.chain_1300	1
scaffold_28	alternate_exon	2638965	2639612	+	asmbl_38088	none	STRG.29420.1,blat.proc3829885.chain_2549	2	STRG.29420.2,STRG.29420.3,Trinity_GG_16327_c0_g1_i2,Trinity_GG_16327_c0_g1_i3,blat.proc3829885.chain_2550,blat.proc3829885.chain_2551	6
scaffold_11	starts_in_intron	3189507	3189507	-	asmbl_6516	none	blat.proc3829893.chain_1923	1	STRG.13438.1,blat.proc3829893.chain_1922	2
scaffold_3	starts_in_intron	13702615	13702615	+	asmbl_40412	none	blat.proc3829873.chain_132	1	STRG.3712.1,STRG.3712.2,blat.proc3829873.chain_129,blat.proc3829873.chain_130	4
scaffold_7	alt_donor	11851032	11851033	+	asmbl_51073	none	STRG.9296.1,blat.proc3829875.chain_1750	2	STRG.9296.3,blat.proc3829875.chain_1749,blat.proc3829875.chain_1751	3
scaffold_1	alt_acceptor	3436528	3436529	+	asmbl_1592	none	STRG.208.1,Trinity_GG_154_c0_g1_i1,blat.proc3829871.chain_267	3	STRG.208.2,Trinity_GG_154_c0_g1_i2,blat.proc3829871.chain_266	3
scaffold_21	spliced_intron	5170519	5170660	-	asmbl_27646,asmbl_27649,asmbl_27650,asmbl_27651,asmbl_27652	none	STRG.24038.1,blat.proc3829899.chain_1128,blat.proc3829899.chain_1129,blat.proc3829899.chain_1131,blat.proc3829899.chain_1132,blat.proc3829899.chain_1134	6	Trinity_GG_30430_c0_g1_i8,blat.proc3829899.chain_1130	2
scaffold_8	skipped_exon	2438124	2439404	-	asmbl_52703	none	STRG.9785.2,blat.proc3829891.chain_1980	2	STRG.9785.1,blat.proc3829891.chain_1981	2
scaffold_20	alternate_exon	4230034	4230376	+	asmbl_25718	none	STRG.23095.1,Trinity_GG_12738_c1_g1_i1,blat.proc3829883.chain_217	3	STRG.23095.3,blat.proc3829883.chain_218	2
scaffold_4	alt_donor	8410355	8410356	+	asmbl_42892	none	STRG.4670.2,Trinity_GG_2582_c0_g1_i1,blat.proc3829873.chain_1018	3	STRG.4670.1,Trinity_GG_2582_c0_g1_i4,blat.proc3829873.chain_1019	3
scaffold_8	ends_in_intron	16546095	16546095	-	asmbl_53434,asmbl_53435	none	STRG.10629.2,Trinity_GG_22929_c0_g1_i4,Trinity_GG_22929_c0_g1_i5,blat.proc3829891.chain_2798,blat.proc3829891.chain_2799	5	STRG.10629.1,blat.proc3829891.chain_2800,blat.proc3829891.chain_2801	3
scaffold_13	retained_intron	14964496	14964531	+	asmbl_11461	none	STRG.16530.1,Trinity_GG_9105_c3_g1_i1	2	STRG.16530.2	1
scaffold_17	spliced_intron	5403268	5403361	-	asmbl_18973	none	STRG.20246.2	1	STRG.20246.1,Trinity_GG_28366_c0_g1_i1	2
scaffold_9	retained_intron	537756	537789	-	asmbl_54772	none	STRG.10774.1,Trinity_GG_22997_c0_g1_i1,blat.proc3829891.chain_2944	3	STRG.10774.2	1
scaffold_3	alt_acceptor	3259546	3259547	+	asmbl_39897,asmbl_39899	none	STRG.3087.1,STRG.3087.6	2	blat.proc3829871.chain_3306,blat.proc3829871.chain_3309	2
scaffold_7	retained_intron	11146814	11146910	+	asmbl_51031,asmbl_51033,asmbl_51034	none	STRG.9251.2,blat.proc3829875.chain_1727,blat.proc3829875.chain_1728,blat.proc3829875.chain_1730	4	STRG.9251.1,blat.proc3829875.chain_1725,blat.proc3829875.chain_1726,blat.proc3829875.chain_1729	4
scaffold_15	alt_acceptor	165859	165860	+	asmbl_13889	none	STRG.17858.2	1	STRG.17858.1	1
scaffold_13	alt_donor	12142383	12142384	+	asmbl_11318	none	STRG.16332.1,Trinity_GG_8950_c0_g1_i1,blat.proc3829879.chain_1027	3	STRG.16332.2,Trinity_GG_8950_c0_g1_i2,blat.proc3829879.chain_1028	3
scaffold_22	skipped_exon	3790101	3790999	-	asmbl_29951,asmbl_29952	none	STRG.24796.1,STRG.24796.2	2	STRG.24796.3,blat.proc3829899.chain_1847,blat.proc3829899.chain_1848	3
scaffold_26	retained_intron	5945002	5945154	-	asmbl_34924	none	STRG.28288.1,blat.proc3829901.chain_1465	2	STRG.28288.2,blat.proc3829901.chain_1466	2
scaffold_6	retained_intron	13944744	13944958	+	asmbl_47486,asmbl_47487	none	STRG.8140.1,STRG.8140.2,Trinity_GG_4452_c1_g1_i1,blat.proc3829875.chain_538	4	STRG.8140.3	1
scaffold_9	retained_intron	17743454	17743546	+	asmbl_54619	none	blat.proc3829877.chain_526	1	STRG.11853.1,STRG.11853.2,STRG.11853.3,blat.proc3829877.chain_521,blat.proc3829877.chain_522,blat.proc3829877.chain_523,blat.proc3829877.chain_525,blat.proc3829877.chain_527	8
scaffold_17	spliced_intron	14633346	14633405	+	asmbl_18535	none	STRG.20934.3	1	STRG.20934.2	1
scaffold_7	skipped_exon	4071695	4072559	-	asmbl_49667	none	STRG.8797.1	1	STRG.8797.2,blat.proc3829891.chain_1109	2
scaffold_11	starts_in_intron	13256183	13256183	+	asmbl_6021	none	blat.proc3829877.chain_2653	1	STRG.14184.2,STRG.14184.3,blat.proc3829877.chain_2651	3
scaffold_402	ends_in_intron	4040	4040	-	asmbl_43650	none	STRG.30288.2,blat.proc3829901.chain_3354	2	STRG.30288.1	1
scaffold_10	skipped_exon	13889774	13890094	-	asmbl_3841	none	STRG.12964.2	1	STRG.12964.1,blat.proc3829893.chain_1445	2
scaffold_28	ends_in_intron	3158542	3158542	+	asmbl_38142	none	blat.proc3829885.chain_2615	1	STRG.29503.1,blat.proc3829885.chain_2616	2
scaffold_4	ends_in_intron	105272	105272	-	asmbl_41045	none	blat.proc3829889.chain_225	1	STRG.4109.1,blat.proc3829889.chain_228	2
scaffold_23	retained_intron	10330988	10331059	+	asmbl_31142,asmbl_31143	none	STRG.26228.2,STRG.26228.3	2	Trinity_GG_14478_c0_g1_i1	1
scaffold_22	alt_acceptor	11640269	11640270	-	asmbl_30458,asmbl_30459,asmbl_30461	none	STRG.25493.1,STRG.25493.2,STRG.25493.3,blat.proc3829899.chain_2578	4	STRG.25493.4	1
scaffold_6	alternate_exon	10916508	10917207	+	asmbl_47247	none	STRG.7900.4,blat.proc3829875.chain_227	2	STRG.7900.3,Trinity_GG_4305_c0_g1_i1,blat.proc3829875.chain_230	3
scaffold_26	retained_exon	9774175	9774293	+	asmbl_35786	none	STRG.28501.10	1	STRG.28501.1,STRG.28501.3,STRG.28501.5,STRG.28501.9,blat.proc3829885.chain_1535,blat.proc3829885.chain_1538	6
scaffold_26	alt_donor	8177441	8177442	+	asmbl_35686	none	STRG.28405.2,blat.proc3829885.chain_1407	2	STRG.28405.1,blat.proc3829885.chain_1406	2
scaffold_13	spliced_intron	7717718	7717809	-	asmbl_9863,asmbl_9864,asmbl_9866	none	STRG.16043.1,STRG.16043.2,blat.proc3829895.chain_748,blat.proc3829895.chain_750,blat.proc3829895.chain_751	5	blat.proc3829895.chain_749	1
scaffold_1	retained_intron	8645480	8646817	-	asmbl_474,asmbl_476	none	STRG.572.3,Trinity_GG_17313_c1_g1_i1,blat.proc3829887.chain_453,blat.proc3829887.chain_456	4	STRG.572.1,STRG.572.2,blat.proc3829887.chain_454,blat.proc3829887.chain_457,blat.proc3829887.chain_458	5
scaffold_9	ends_in_intron	11818876	11818876	-	asmbl_55280	none	STRG.11490.4	1	STRG.11490.2	1
scaffold_21	retained_intron	706527	706986	-	asmbl_27378	none	STRG.23751.2,blat.proc3829899.chain_814	2	STRG.23751.1,blat.proc3829899.chain_811	2
scaffold_11	alt_donor	17383104	17383105	-	asmbl_7244,asmbl_7247	none	STRG.14391.1,blat.proc3829893.chain_2760,blat.proc3829893.chain_2761	3	STRG.14391.2	1
scaffold_19	starts_in_intron	1736017	1736017	-	asmbl_21252	none	blat.proc3829897.chain_2697	1	STRG.21921.1,STRG.21921.2,blat.proc3829897.chain_2698	3
scaffold_13	alt_donor	520272	520273	+	asmbl_10454,asmbl_10456,asmbl_10457,asmbl_10458,asmbl_10461	none	STRG.15434.1,STRG.15434.2,STRG.15434.3,STRG.15434.4,Trinity_GG_8491_c0_g1_i1,blat.proc3829879.chain_110,blat.proc3829879.chain_114,blat.proc3829879.chain_115,blat.proc3829879.chain_116	9	STRG.15434.5,Trinity_GG_8491_c0_g1_i2,blat.proc3829879.chain_111,blat.proc3829879.chain_113	4
scaffold_4	retained_intron	19274656	19274833	-	asmbl_42171	none	blat.proc3829889.chain_1529	1	STRG.5507.1,blat.proc3829889.chain_1528	2
scaffold_21	alt_acceptor	4600234	4600235	+	asmbl_28546	none	STRG.23996.3,blat.proc3829883.chain_1115	2	STRG.23996.2	1
scaffold_8	ends_in_intron	7803562	7803562	-	asmbl_52919	none	blat.proc3829891.chain_2147	1	STRG.10090.1,blat.proc3829891.chain_2143,blat.proc3829891.chain_2144,blat.proc3829891.chain_2145,blat.proc3829891.chain_2146	5
scaffold_15	starts_in_intron	4500084	4500084	+	asmbl_14094	none	blat.proc3829879.chain_2737	1	STRG.18164.1,blat.proc3829879.chain_2736,blat.proc3829879.chain_2738	3
scaffold_13	alt_acceptor	7526174	7526175	-	asmbl_9857,asmbl_9859	none	STRG.16032.2,STRG.16032.3,Trinity_GG_26032_c0_g1_i3,Trinity_GG_26032_c0_g1_i4,blat.proc3829895.chain_831,blat.proc3829895.chain_833	6	STRG.16032.1,Trinity_GG_26032_c0_g1_i1,blat.proc3829895.chain_832	3
scaffold_1	starts_in_intron	21249757	21249757	+	asmbl_2666	none	blat.proc3829871.chain_1483	1	STRG.1441.1	1
scaffold_26	starts_in_intron	4434450	4434450	+	asmbl_35426	none	Trinity_GG_15542_c1_g1_i1,blat.proc3829885.chain_1123	2	STRG.28141.1,blat.proc3829885.chain_1124	2
scaffold_10	alt_acceptor	2678282	2678283	+	asmbl_4271	none	STRG.12077.1	1	STRG.12077.2,STRG.12077.3,blat.proc3829877.chain_790	3
scaffold_15	starts_in_intron	12533059	12533059	-	asmbl_15599	none	STRG.18699.1,Trinity_GG_27506_c0_g1_i1,blat.proc3829895.chain_3445	3	STRG.18699.2,STRG.18699.3,blat.proc3829895.chain_3444,blat.proc3829895.chain_3446	4
scaffold_12	starts_in_intron	7113077	7113077	+	asmbl_8677	none	blat.proc3829877.chain_3208	1	STRG.14760.1,blat.proc3829877.chain_3209,blat.proc3829877.chain_3210	3
scaffold_13	alt_acceptor	2653329	2653330	-	asmbl_9429	none	STRG.15566.2	1	STRG.15566.1,blat.proc3829895.chain_303,blat.proc3829895.chain_305	3
scaffold_15	starts_in_intron	7224326	7224326	+	asmbl_14222	none	Trinity_GG_10032_c0_g1_i2,blat.proc3829879.chain_2917	2	STRG.18305.1,blat.proc3829879.chain_2916	2
scaffold_7	spliced_intron	10910943	10910963	-	asmbl_49954	none	STRG.9240.2	1	STRG.9240.3,blat.proc3829891.chain_1470	2
scaffold_2	alt_donor	18707681	18707682	+	asmbl_25266,asmbl_25267	none	STRG.2747.2,Trinity_GG_1541_c0_g1_i1,Trinity_GG_1541_c0_g1_i2,blat.proc3829871.chain_2909,blat.proc3829871.chain_2910	5	STRG.2747.1,Trinity_GG_1541_c0_g1_i3,blat.proc3829871.chain_2911	3
scaffold_19	retained_intron	11457726	11458092	-	asmbl_21597	none	blat.proc3829897.chain_3112	1	STRG.22464.1,Trinity_GG_29491_c0_g1_i7,blat.proc3829897.chain_3111,blat.proc3829897.chain_3114,blat.proc3829897.chain_3115,blat.proc3829897.chain_3116	6
scaffold_5	alt_acceptor	13316699	13316700	-	asmbl_45917,asmbl_45918,asmbl_45919	none	blat.proc3829889.chain_2545,blat.proc3829889.chain_2546,blat.proc3829889.chain_2547	3	STRG.6578.1,STRG.6578.2	2
scaffold_27	alt_acceptor	381928	381929	-	asmbl_36633	none	STRG.28547.1,blat.proc3829901.chain_1687	2	STRG.28547.2,STRG.28547.4,STRG.28547.5,blat.proc3829901.chain_1684,blat.proc3829901.chain_1685,blat.proc3829901.chain_1686	6
scaffold_23	retained_exon	7512954	7513088	-	asmbl_31753	none	STRG.26043.1	1	STRG.26043.3,blat.proc3829899.chain_3152	2
scaffold_22	retained_intron	326720	327593	+	asmbl_29141	none	Trinity_GG_13635_c0_g1_i1,blat.proc3829883.chain_1709	2	STRG.24672.1,Trinity_GG_13635_c0_g1_i2,blat.proc3829883.chain_1710	3
scaffold_23	retained_intron	6854401	6855600	-	asmbl_31702	none	STRG.26000.1,blat.proc3829899.chain_3088	2	STRG.26000.2,STRG.26000.3	2
scaffold_12	ends_in_intron	15686023	15686023	-	asmbl_8238	none	Trinity_GG_25582_c0_g1_i2,blat.proc3829895.chain_15	2	STRG.15345.1,Trinity_GG_25582_c0_g1_i1,blat.proc3829895.chain_14	3
scaffold_3	spliced_intron	17456083	17456973	+	asmbl_40645	none	STRG.3976.4	1	STRG.3976.2,Trinity_GG_2205_c0_g1_i4,blat.proc3829873.chain_331,blat.proc3829873.chain_334	4
scaffold_13	starts_in_intron	4161	4161	+	asmbl_10420,asmbl_10421,asmbl_10423	none	STRG.15408.3,Trinity_GG_8474_c0_g1_i1,Trinity_GG_8474_c0_g1_i7,blat.proc3829879.chain_75,blat.proc3829879.chain_78	5	STRG.15408.1,STRG.15408.2,Trinity_GG_8474_c0_g1_i2,Trinity_GG_8474_c0_g1_i6,blat.proc3829879.chain_71,blat.proc3829879.chain_76	6
scaffold_28	alt_acceptor	6515507	6515508	-	asmbl_37673	none	STRG.29726.2	1	blat.proc3829901.chain_2784	1
scaffold_13	spliced_intron	2295238	2295321	+	asmbl_10556,asmbl_10558	none	STRG.15531.1,blat.proc3829879.chain_257,blat.proc3829879.chain_258	3	blat.proc3829879.chain_256	1
scaffold_12	retained_intron	11324172	11324264	+	asmbl_8926	none	STRG.15051.2,Trinity_GG_8310_c0_g1_i1,blat.proc3829877.chain_3549	3	STRG.15051.1,Trinity_GG_8310_c0_g1_i2,blat.proc3829877.chain_3550	3
scaffold_12	starts_in_intron	14290670	14290670	-	asmbl_8132,asmbl_8134	none	STRG.15255.3,blat.proc3829893.chain_3648,blat.proc3829893.chain_3650	3	STRG.15255.1	1
scaffold_9	starts_in_intron	10766466	10766466	+	asmbl_54278	none	Trinity_GG_6341_c0_g1_i2,blat.proc3829877.chain_154	2	STRG.11370.1,blat.proc3829877.chain_155	2
scaffold_6	retained_intron	187756	187786	+	asmbl_46590	none	STRG.7073.1,Trinity_GG_3914_c1_g1_i1,Trinity_GG_3914_c1_g1_i2,blat.proc3829873.chain_3244,blat.proc3829873.chain_3245	5	STRG.7073.2	1
scaffold_4	starts_in_intron	1394223	1394223	-	asmbl_41115	none	blat.proc3829889.chain_295	1	STRG.4178.1,blat.proc3829873.chain_506,blat.proc3829889.chain_294	3
scaffold_5	alt_acceptor	10131432	10131433	+	asmbl_44324	none	STRG.6306.1	1	STRG.6306.2,Trinity_GG_3405_c0_g1_i1,Trinity_GG_3405_c0_g1_i2,blat.proc3829873.chain_2385,blat.proc3829873.chain_2386	5
scaffold_10	retained_intron	13521752	13521830	+	asmbl_4882	none	STRG.12936.1,Trinity_GG_7137_c0_g1_i2,blat.proc3829877.chain_1512	3	STRG.12936.2,blat.proc3829877.chain_1513	2
scaffold_2074	ends_in_intron	888	888	-	asmbl_27279	none	Trinity_GG_34214_c0_g1_i2,blat.proc3829901.chain_3642	2	STRG.30677.1,STRG.30677.2	2
scaffold_300	alt_acceptor	1584	1585	+	asmbl_40849	none	STRG.30247.1,blat.proc3829885.chain_3278	2	STRG.30247.2	1
scaffold_17	alt_acceptor	6801768	6801769	+	asmbl_18001,asmbl_18002,asmbl_18003,asmbl_18005	none	STRG.20322.1,STRG.20322.2,STRG.20322.3,blat.proc3829881.chain_1106,blat.proc3829881.chain_1107,blat.proc3829881.chain_1108	6	STRG.20322.4	1
scaffold_6	starts_in_intron	7351783	7351783	+	asmbl_47007	none	Trinity_GG_4173_c0_g1_i3,blat.proc3829873.chain_3733	2	STRG.7636.1,Trinity_GG_4173_c0_g1_i2,blat.proc3829873.chain_3732,blat.proc3829873.chain_3734	4
scaffold_8	retained_exon	9128242	9128356	-	asmbl_53003	none	STRG.10161.1	1	STRG.10161.2,blat.proc3829891.chain_2335,blat.proc3829891.chain_2336	3
scaffold_1	spliced_intron	21665391	21665422	-	asmbl_1213	none	STRG.1454.2,blat.proc3829887.chain_1319	2	STRG.1454.1,Trinity_GG_17797_c0_g1_i1,blat.proc3829887.chain_1318	3
scaffold_13	spliced_intron	8353056	8353594	+	asmbl_11110,asmbl_11116	none	STRG.16112.1,STRG.16112.2,blat.proc3829879.chain_892	3	blat.proc3829879.chain_891	1
scaffold_1	ends_in_intron	20342228	20342228	+	asmbl_2605,asmbl_2609	none	blat.proc3829871.chain_1443	1	STRG.1398.2,STRG.1398.3,STRG.1398.4,STRG.1398.5,STRG.1398.6,blat.proc3829871.chain_1446,blat.proc3829871.chain_1450,blat.proc3829871.chain_1452,blat.proc3829871.chain_1453	9
scaffold_12	alt_acceptor	14100592	14100593	-	asmbl_8105	none	STRG.15222.2,blat.proc3829893.chain_3671	2	STRG.15222.1	1
scaffold_3	starts_in_intron	13146417	13146417	+	asmbl_40379,asmbl_40380,asmbl_40383	none	STRG.3678.2,STRG.3678.3,STRG.3678.4	3	STRG.3678.1	1
scaffold_2208	spliced_intron	1132	1315	-	asmbl_30560	none	blat.proc3829901.chain_3157	1	STRG.30700.1,Trinity_GG_16772_c0_g1_i1,Trinity_GG_33865_c0_g1_i1,Trinity_GG_34223_c0_g1_i1,blat.proc3829901.chain_3651	5
scaffold_4	alt_acceptor	1907781	1907782	+	asmbl_42465	none	STRG.4202.1	1	STRG.4202.2,blat.proc3829873.chain_556	2
scaffold_15	ends_in_intron	2896837	2896837	-	asmbl_15068,asmbl_15069	none	STRG.18064.6,STRG.18064.7,Trinity_GG_27135_c1_g1_i1,blat.proc3829895.chain_2740	4	STRG.18064.2	1
scaffold_5	starts_in_intron	16017273	16017273	-	asmbl_46119	none	Trinity_GG_20823_c0_g1_i3,blat.proc3829889.chain_2847	2	STRG.6778.1,STRG.6778.2,Trinity_GG_20823_c0_g1_i4,blat.proc3829889.chain_2846,blat.proc3829889.chain_2848,blat.proc3829889.chain_2849	6
scaffold_18	spliced_intron	8726889	8727002	+	asmbl_20882,asmbl_20883,asmbl_20884,asmbl_20885	none	STRG.21533.1,STRG.21533.2,STRG.21533.3,STRG.21533.5,blat.proc3829881.chain_2483,blat.proc3829881.chain_2485,blat.proc3829881.chain_2486,blat.proc3829881.chain_2488	8	STRG.21533.6,blat.proc3829881.chain_2484	2
scaffold_5	alt_acceptor	4686016	4686017	-	asmbl_45370,asmbl_45373,asmbl_45379,asmbl_45380,asmbl_45382	none	STRG.5919.1,blat.proc3829889.chain_2027,blat.proc3829889.chain_2028,blat.proc3829889.chain_2029,blat.proc3829889.chain_2030,blat.proc3829889.chain_2032	6	STRG.5919.4,blat.proc3829889.chain_2033,blat.proc3829889.chain_2035	3
scaffold_8	spliced_intron	4860713	4860934	-	asmbl_52803,asmbl_52804	none	STRG.9940.1,blat.proc3829891.chain_2117,blat.proc3829891.chain_2118	3	blat.proc3829891.chain_2116	1
scaffold_3	spliced_intron	10937352	10937449	-	asmbl_39076	none	STRG.3534.2,blat.proc3829887.chain_3295	2	STRG.3534.1,STRG.3534.4,blat.proc3829887.chain_3294	3
scaffold_23	alt_donor	7998211	7998212	+	asmbl_31045	none	STRG.26092.1	1	STRG.26092.2	1
scaffold_8	spliced_intron	13133136	13133848	-	asmbl_53273	none	blat.proc3829891.chain_2642	1	STRG.10481.2,blat.proc3829891.chain_2640,blat.proc3829891.chain_2641	3
scaffold_18	alternate_exon	4561847	4566370	-	asmbl_19847	none	STRG.21234.2	1	STRG.21234.1	1
scaffold_19	alt_donor	6663729	6663730	+	asmbl_22231	none	STRG.22169.2	1	STRG.22169.1,STRG.22169.3,STRG.22169.4,blat.proc3829881.chain_3026,blat.proc3829881.chain_3027	5
scaffold_18	retained_intron	7686792	7686884	+	asmbl_20801,asmbl_20802,asmbl_20808,asmbl_20810	none	STRG.21464.2,STRG.21464.4,Trinity_GG_11863_c0_g1_i9,blat.proc3829881.chain_2433,blat.proc3829881.chain_2434,blat.proc3829881.chain_2435,blat.proc3829881.chain_2436	7	STRG.21464.3,blat.proc3829881.chain_2440	2
scaffold_18	alt_donor	3093263	3093264	+	asmbl_20465	none	Trinity_GG_11616_c0_g1_i1,blat.proc3829881.chain_1985	2	STRG.21136.1,Trinity_GG_11616_c0_g1_i2,blat.proc3829881.chain_1984	3
scaffold_22	alternate_exon	11477061	11477095	+	asmbl_29683	none	STRG.25476.1	1	STRG.25476.2,STRG.25476.3,STRG.25476.4,Trinity_GG_14064_c0_g1_i2,Trinity_GG_14064_c0_g1_i3,Trinity_GG_14064_c0_g1_i4,blat.proc3829883.chain_2402,blat.proc3829883.chain_2403,blat.proc3829883.chain_2404	9
scaffold_20	alt_acceptor	7144577	7144578	-	asmbl_26800	none	STRG.23267.1	1	blat.proc3829883.chain_388	1
scaffold_5	retained_intron	14569065	14569227	-	asmbl_45979	none	blat.proc3829889.chain_2695	1	STRG.6648.2	1
scaffold_14	starts_in_intron	5598875	5598875	+	asmbl_12011	none	Trinity_GG_9387_c1_g1_i2,blat.proc3829879.chain_1785	2	STRG.17026.1,blat.proc3829879.chain_1781,blat.proc3829879.chain_1782	3
scaffold_9	skipped_exon	9706825	9707760	+	asmbl_54214	none	Trinity_GG_6324_c1_g1_i1,blat.proc3829877.chain_111	2	STRG.11336.1,blat.proc3829877.chain_110	2
scaffold_4	retained_intron	3243470	3243537	-	asmbl_41169	none	STRG.4248.1	1	STRG.4248.2	1
scaffold_27	alt_donor	1553631	1553632	+	asmbl_35989	none	STRG.28622.2	1	STRG.28622.1,blat.proc3829885.chain_1648	2
scaffold_21	spliced_intron	5770329	5771473	-	asmbl_27718,asmbl_27719,asmbl_27721,asmbl_27722,asmbl_27723	none	STRG.24099.1,STRG.24099.2,STRG.24099.3,blat.proc3829899.chain_1198,blat.proc3829899.chain_1199,blat.proc3829899.chain_1200,blat.proc3829899.chain_1202	7	blat.proc3829899.chain_1196	1
scaffold_7	alt_acceptor	13484632	13484633	-	asmbl_50124	none	STRG.9441.2	1	STRG.9441.1,blat.proc3829891.chain_1682	2
scaffold_20	skipped_exon	7196433	7197471	+	asmbl_25860	none	STRG.23278.1	1	STRG.23278.2,blat.proc3829883.chain_407,blat.proc3829883.chain_408	3
scaffold_340	retained_intron	2528	2711	+	asmbl_40962	none	Trinity_GG_24043_c0_g1_i3,blat.proc3829893.chain_1074	2	STRG.30267.1,STRG.30267.2,STRG.30267.3,STRG.30267.4,blat.proc3829885.chain_3313,blat.proc3829893.chain_1073	6
scaffold_3	starts_in_intron	1757795	1757795	+	asmbl_39828,asmbl_39829	none	STRG.2991.2,blat.proc3829871.chain_3184	2	STRG.2991.1,blat.proc3829871.chain_3179,blat.proc3829871.chain_3180,blat.proc3829871.chain_3181,blat.proc3829871.chain_3185	5
scaffold_20	skipped_exon	628851	631334	-	asmbl_26435	none	STRG.22751.2,blat.proc3829897.chain_3524	2	STRG.22751.1,STRG.22751.3,blat.proc3829897.chain_3522,blat.proc3829897.chain_3523	4
scaffold_22	alternate_exon	11475784	11475839	-	asmbl_30451	none	STRG.25475.3	1	STRG.25475.1	1
scaffold_5	alt_donor	17001581	17001582	+	asmbl_44785	none	STRG.6873.2,blat.proc3829873.chain_2979	2	STRG.6873.1,blat.proc3829873.chain_2978	2
scaffold_22	retained_exon	9718220	9718655	+	asmbl_29601	none	STRG.25292.4	1	STRG.25292.1,blat.proc3829883.chain_2231	2
scaffold_7	alt_acceptor	7440468	7440469	+	asmbl_50808	none	STRG.8986.2	1	STRG.8986.1,blat.proc3829875.chain_1390	2
scaffold_19	spliced_intron	5594710	5594731	+	asmbl_22186	none	blat.proc3829881.chain_3044	1	STRG.22107.1,Trinity_GG_12218_c0_g1_i1	2
scaffold_14	spliced_intron	399142	399371	+	asmbl_11728,asmbl_11730	none	STRG.16722.2,STRG.16722.5	2	STRG.16722.3	1
scaffold_10	ends_in_intron	1425809	1425809	+	asmbl_4216	none	Trinity_GG_6688_c0_g1_i3,blat.proc3829877.chain_730	2	STRG.12005.1,STRG.12005.4,STRG.12005.5,Trinity_GG_6688_c0_g1_i6,blat.proc3829877.chain_729,blat.proc3829877.chain_731	6
scaffold_12	starts_in_intron	15031441	15031441	-	asmbl_8173	none	blat.proc3829893.chain_3733	1	STRG.15287.1,blat.proc3829893.chain_3732	2
scaffold_16	spliced_intron	7216868	7217206	-	asmbl_16353,asmbl_16356	none	STRG.19382.2,STRG.19382.5	2	STRG.19382.1,STRG.19382.3,STRG.19382.4,STRG.19382.6,Trinity_GG_27897_c0_g1_i1,Trinity_GG_27897_c0_g1_i20,blat.proc3829897.chain_409,blat.proc3829897.chain_414	8
scaffold_3	retained_exon	8997704	8997790	-	asmbl_39005,asmbl_39006	none	STRG.3425.2,blat.proc3829887.chain_3231	2	STRG.3425.1,blat.proc3829887.chain_3227,blat.proc3829887.chain_3230	3
scaffold_15	alternate_exon	15347990	15348041	+	asmbl_14703	none	STRG.18908.2	1	STRG.18908.3	1
scaffold_2	alt_donor	4624737	4624738	+	asmbl_24394	none	STRG.1886.1	1	blat.proc3829871.chain_1901	1
scaffold_13	spliced_intron	10226230	10226249	-	asmbl_10014	none	STRG.16243.3	1	STRG.16243.1,STRG.16243.2,STRG.16243.4	3
scaffold_15	alt_acceptor	16268616	16268617	-	asmbl_15838	none	blat.proc3829895.chain_3730	1	STRG.18968.1,Trinity_GG_27665_c0_g1_i1,blat.proc3829895.chain_3731	3
scaffold_14	alternate_exon	15910094	15910237	-	asmbl_13744	none	STRG.17820.2,blat.proc3829895.chain_2505	2	STRG.17820.4,Trinity_GG_27009_c0_g1_i2,blat.proc3829895.chain_2506	3
scaffold_22	starts_in_intron	4210040	4210040	-	asmbl_29973	none	blat.proc3829899.chain_1931	1	blat.proc3829899.chain_1933	1
scaffold_27	ends_in_intron	391149	391149	-	asmbl_36639	none	blat.proc3829901.chain_1734	1	STRG.28546.1,blat.proc3829901.chain_1732	2
scaffold_5	alt_donor	8132404	8132405	+	asmbl_44192	none	STRG.6170.2,blat.proc3829873.chain_2321	2	STRG.6170.1,blat.proc3829873.chain_2318,blat.proc3829873.chain_2319	3
scaffold_13	starts_in_intron	4606866	4606866	-	asmbl_9608	none	Trinity_GG_25880_c0_g2_i1,blat.proc3829895.chain_535	2	STRG.15781.1,Trinity_GG_25880_c0_g1_i1,blat.proc3829895.chain_530	3
scaffold_7	retained_intron	124900	125149	-	asmbl_49480,asmbl_49486	none	STRG.8585.2,blat.proc3829891.chain_992	2	STRG.8585.1,STRG.8585.4,STRG.8585.8,blat.proc3829891.chain_998	4
scaffold_15	spliced_intron	15179285	15179381	+	asmbl_14678	none	STRG.18906.4	1	blat.proc3829879.chain_3481,blat.proc3829879.chain_3482	2
scaffold_13	retained_intron	518381	518487	+	asmbl_10457,asmbl_10459	none	STRG.15434.1,blat.proc3829879.chain_111,blat.proc3829879.chain_114	3	STRG.15434.4,STRG.15434.5	2
scaffold_15	alt_donor	14663329	14663330	+	asmbl_14641	none	STRG.18874.2	1	STRG.18874.1,STRG.18874.3,Trinity_GG_10354_c0_g1_i4,blat.proc3829879.chain_3459	4
scaffold_3	retained_intron	5774893	5775417	-	asmbl_38815,asmbl_38816,asmbl_38817	none	STRG.3244.1,STRG.3244.2,STRG.3244.4,blat.proc3829887.chain_2960,blat.proc3829887.chain_2962	5	STRG.3244.3,blat.proc3829887.chain_2961	2
scaffold_15	alt_acceptor	142572	142573	-	asmbl_14921,asmbl_14922,asmbl_14923	none	STRG.17865.5,blat.proc3829895.chain_2599,blat.proc3829895.chain_2600	3	STRG.17865.2	1
scaffold_5	alt_donor	5729856	5729857	+	asmbl_44022	none	STRG.5982.1,blat.proc3829873.chain_2082,blat.proc3829873.chain_2083	3	STRG.5982.2	1
scaffold_4	alternate_exon	6948133	6948161	+	asmbl_42763	none	Trinity_GG_2515_c0_g1_i7,blat.proc3829873.chain_902	2	STRG.4536.1,STRG.4536.2,STRG.4536.3,blat.proc3829873.chain_899,blat.proc3829873.chain_901,blat.proc3829873.chain_903,blat.proc3829873.chain_905	7
scaffold_4	skipped_exon	5677456	5678803	+	asmbl_42694	none	STRG.4466.1,blat.proc3829873.chain_828	2	STRG.4466.2,blat.proc3829873.chain_827	2
scaffold_26	retained_intron	5895307	5895541	-	asmbl_34914	none	STRG.28281.2,blat.proc3829901.chain_1396	2	STRG.28281.1,STRG.28281.3,blat.proc3829901.chain_1395,blat.proc3829901.chain_1397	4
scaffold_25	spliced_intron	9043176	9043406	-	asmbl_34447,asmbl_34448,asmbl_34452	none	STRG.27702.1,STRG.27702.2,STRG.27702.3,blat.proc3829901.chain_982,blat.proc3829901.chain_984,blat.proc3829901.chain_985,blat.proc3829901.chain_986,blat.proc3829901.chain_988	8	Trinity_GG_32528_c0_g1_i7,blat.proc3829901.chain_983	2
scaffold_19	ends_in_intron	1612936	1612936	+	asmbl_22048	none	blat.proc3829881.chain_2876	1	STRG.21903.1,STRG.21903.2,blat.proc3829881.chain_2877,blat.proc3829881.chain_2878	4
scaffold_13	retained_exon	5920103	5920192	-	asmbl_9708	none	STRG.15892.1,Trinity_GG_25942_c0_g1_i2,blat.proc3829895.chain_649	3	STRG.15892.2,Trinity_GG_25942_c0_g1_i3,blat.proc3829895.chain_648	3
scaffold_26	alt_donor	2942398	2942399	-	asmbl_34728	none	STRG.27965.1	1	STRG.27965.2	1
scaffold_23	alt_acceptor	2164335	2164336	-	asmbl_31423	none	STRG.25669.3	1	STRG.25669.1,STRG.25669.4,STRG.25669.5,STRG.25669.6,STRG.25669.7	5
scaffold_13	spliced_intron	16460036	16460320	-	asmbl_10274,asmbl_10275	none	STRG.16689.4,Trinity_GG_26334_c0_g1_i3,Trinity_GG_26334_c0_g1_i4,blat.proc3829895.chain_1353,blat.proc3829895.chain_1354	5	STRG.16689.2,blat.proc3829895.chain_1356	2
scaffold_13	skipped_exon	7717856	7718307	-	asmbl_9863	none	STRG.16043.1,blat.proc3829895.chain_748	2	STRG.16043.2,blat.proc3829895.chain_750	2
scaffold_9	alt_donor	9990766	9990767	-	asmbl_55215	none	STRG.11352.2,blat.proc3829891.chain_3458	2	STRG.11352.1,blat.proc3829891.chain_3457	2
scaffold_8	retained_intron	14432596	14432761	+	asmbl_52363	none	blat.proc3829875.chain_3042	1	STRG.10524.1,blat.proc3829875.chain_3041	2
scaffold_6	starts_in_intron	17493878	17493878	+	asmbl_47697	none	blat.proc3829875.chain_782	1	STRG.8440.1,Trinity_GG_4612_c0_g2_i1,blat.proc3829875.chain_783,blat.proc3829875.chain_784	4
scaffold_18	spliced_intron	7631535	7631646	-	asmbl_20003	none	STRG.21453.3	1	STRG.21453.1,STRG.21453.5,blat.proc3829897.chain_2308,blat.proc3829897.chain_2309	4
scaffold_8	alt_donor	11848560	11848561	+	asmbl_52269,asmbl_52274,asmbl_52277,asmbl_52280,asmbl_52281,asmbl_52283	none	STRG.10382.3,blat.proc3829875.chain_2967,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2976,blat.proc3829875.chain_2978,blat.proc3829875.chain_2979	7	STRG.10382.2	1
scaffold_18	alt_donor	282012	282013	+	asmbl_20312	none	STRG.20973.3,Trinity_GG_11537_c1_g1_i1,blat.proc3829881.chain_1824	3	STRG.20973.1,STRG.20973.4,blat.proc3829881.chain_1822,blat.proc3829881.chain_1823	4
scaffold_19	alt_acceptor	10858075	10858076	-	asmbl_21574	none	STRG.22418.1	1	STRG.22418.2,blat.proc3829897.chain_3021	2
scaffold_23	alternate_exon	1570798	1570900	-	asmbl_31379	none	STRG.25616.1,Trinity_GG_31344_c0_g1_i2,blat.proc3829899.chain_2734	3	STRG.25616.2,Trinity_GG_31344_c0_g1_i1,blat.proc3829899.chain_2735	3
scaffold_21	starts_in_intron	7493564	7493564	+	asmbl_28759	none	Trinity_GG_13447_c1_g1_i1	1	STRG.24265.1,blat.proc3829883.chain_1414	2
scaffold_3	alt_donor	3323907	3323908	-	asmbl_38730	none	blat.proc3829887.chain_2789	1	STRG.3076.1,STRG.3076.2,blat.proc3829887.chain_2788,blat.proc3829887.chain_2790	4
scaffold_26	skipped_exon	2781259	2782166	+	asmbl_35286	none	STRG.27953.2	1	blat.proc3829885.chain_929	1
scaffold_23	spliced_intron	5303321	5303517	+	asmbl_30857	none	Trinity_GG_14289_c0_g1_i4,blat.proc3829883.chain_2770	2	STRG.25887.1,STRG.25887.2,STRG.25887.3,Trinity_GG_14289_c0_g1_i1,Trinity_GG_14289_c0_g1_i2,Trinity_GG_14289_c0_g1_i3,Trinity_GG_14289_c0_g1_i5,blat.proc3829883.chain_2768,blat.proc3829883.chain_2769,blat.proc3829883.chain_2771,blat.proc3829883.chain_2772	11
scaffold_16	spliced_intron	10448144	10448354	+	asmbl_17339	none	STRG.19602.5	1	STRG.19602.1,STRG.19602.3,Trinity_GG_10708_c1_g1_i1,blat.proc3829881.chain_427	4
scaffold_17	starts_in_intron	3381242	3381242	-	asmbl_18854	none	blat.proc3829897.chain_1027	1	STRG.20105.1	1
scaffold_20	ends_in_intron	1094687	1094687	-	asmbl_26465	none	Trinity_GG_29736_c0_g1_i2,blat.proc3829897.chain_3585	2	STRG.22803.1,blat.proc3829897.chain_3586	2
scaffold_6	starts_in_intron	10309978	10309978	-	asmbl_48619	none	blat.proc3829891.chain_152	1	blat.proc3829891.chain_150,blat.proc3829891.chain_151	2
scaffold_21	alt_acceptor	10868410	10868411	-	asmbl_28108	none	STRG.24546.2	1	STRG.24546.1,blat.proc3829899.chain_1698	2
scaffold_8	alt_donor	9167841	9167842	-	asmbl_53013,asmbl_53015	none	STRG.10173.2,STRG.10173.3,blat.proc3829891.chain_2228	3	STRG.10173.1,blat.proc3829891.chain_2227,blat.proc3829891.chain_2230	3
scaffold_14	alt_acceptor	7497480	7497481	+	asmbl_12148	none	STRG.17177.3	1	STRG.17177.1,STRG.17177.2,STRG.17177.4,blat.proc3829879.chain_1834	4
scaffold_18	alt_donor	2835065	2835066	+	asmbl_20452	none	STRG.21133.5	1	STRG.21133.4,blat.proc3829881.chain_1914,blat.proc3829881.chain_1917	3
scaffold_9	ends_in_intron	17782636	17782636	-	asmbl_55641	none	blat.proc3829893.chain_208	1	STRG.11854.1	1
scaffold_20	ends_in_intron	5840615	5840615	+	asmbl_25785	none	blat.proc3829883.chain_308	1	STRG.23168.1,blat.proc3829883.chain_306,blat.proc3829883.chain_307	3
scaffold_25	alt_acceptor	1296837	1296838	+	asmbl_33361	none	blat.proc3829901.chain_462	1	STRG.27156.1	1
scaffold_18	alternate_exon	1752756	1752882	-	asmbl_19679	none	blat.proc3829897.chain_1944	1	STRG.21056.1,blat.proc3829897.chain_1945,blat.proc3829897.chain_1946	3
scaffold_2	starts_in_intron	18721335	18721335	+	asmbl_25274	none	blat.proc3829871.chain_2919	1	STRG.2750.1,blat.proc3829871.chain_2920	2
scaffold_9	retained_intron	11793088	11794280	-	asmbl_55266,asmbl_55267,asmbl_55271	none	STRG.11484.4,STRG.11484.5,blat.proc3829891.chain_3593	3	STRG.11484.1,blat.proc3829891.chain_3590,blat.proc3829891.chain_3592,blat.proc3829891.chain_3594	4
scaffold_2	spliced_intron	17234631	17234740	-	asmbl_23731	none	STRG.2619.2	1	STRG.2619.1,Trinity_GG_18462_c1_g1_i1,blat.proc3829887.chain_2466	3
scaffold_14	spliced_intron	8589819	8590023	+	asmbl_12234	none	STRG.17274.1,blat.proc3829879.chain_2005	2	STRG.17274.2,blat.proc3829879.chain_2006	2
scaffold_3	retained_intron	10305664	10306094	+	asmbl_40216	none	STRG.3466.2,Trinity_GG_1968_c0_g2_i3,blat.proc3829871.chain_3657	3	STRG.3466.1,STRG.3466.3,Trinity_GG_1968_c0_g2_i1,blat.proc3829871.chain_3655,blat.proc3829871.chain_3656	5
scaffold_6	alt_acceptor	13132632	13132633	-	asmbl_48819	none	STRG.8063.2,Trinity_GG_21591_c0_g1_i2,blat.proc3829891.chain_353	3	STRG.8063.1,blat.proc3829891.chain_352	2
scaffold_13	alt_acceptor	4378677	4378678	+	asmbl_10766,asmbl_10767	none	STRG.15749.1,STRG.15749.2	2	STRG.15749.3,blat.proc3829879.chain_404	2
scaffold_18	alt_acceptor	7547034	7547035	-	asmbl_19990,asmbl_19991	none	STRG.21448.1,blat.proc3829897.chain_2296,blat.proc3829897.chain_2297	3	STRG.21448.2,STRG.21448.3	2
scaffold_22	alt_acceptor	7901739	7901740	-	asmbl_30209	none	STRG.25123.1	1	STRG.25123.3	1
scaffold_3	spliced_intron	3271219	3272019	-	asmbl_38717,asmbl_38720	none	STRG.3088.1,blat.proc3829887.chain_2794,blat.proc3829887.chain_2796	3	Trinity_GG_18653_c0_g1_i2,blat.proc3829887.chain_2795	2
scaffold_23	retained_intron	7045280	7045597	-	asmbl_31733	none	blat.proc3829899.chain_3120	1	STRG.26010.1,blat.proc3829899.chain_3117,blat.proc3829899.chain_3119	3
scaffold_1	alternate_exon	20009772	20009906	+	asmbl_2590	none	STRG.1369.2	1	STRG.1369.1,Trinity_GG_753_c0_g1_i2,blat.proc3829871.chain_1334	3
scaffold_15	alternate_exon	12029625	12030066	+	asmbl_14456,asmbl_14457	none	STRG.18636.1,STRG.18636.2,Trinity_GG_10226_c0_g1_i1,Trinity_GG_10227_c0_g1_i2,Trinity_GG_10227_c0_g1_i3,blat.proc3829879.chain_3224,blat.proc3829879.chain_3226,blat.proc3829879.chain_3228	8	STRG.18636.3,Trinity_GG_10227_c0_g1_i4,blat.proc3829879.chain_3225	3
scaffold_23	skipped_exon	7278968	7279762	-	asmbl_31742	none	STRG.26034.3	1	STRG.26034.1,blat.proc3829899.chain_3127	2
scaffold_16	alt_acceptor	9562826	9562827	+	asmbl_17293	none	STRG.19543.1,blat.proc3829881.chain_416	2	blat.proc3829881.chain_417	1
scaffold_4	skipped_exon	3440312	3442264	-	asmbl_41185	none	STRG.4270.2,blat.proc3829889.chain_388	2	STRG.4270.1,blat.proc3829889.chain_387	2
scaffold_10	alternate_exon	7259088	7259238	-	asmbl_3455	none	STRG.12525.2	1	STRG.12525.1,blat.proc3829893.chain_1014	2
scaffold_6	retained_exon	10895155	10895251	+	asmbl_47241	none	STRG.7901.2,blat.proc3829875.chain_292	2	STRG.7901.1,blat.proc3829875.chain_290	2
scaffold_11	alt_acceptor	6016352	6016353	+	asmbl_5563,asmbl_5564	none	STRG.13657.1,STRG.13657.2,blat.proc3829877.chain_2112,blat.proc3829877.chain_2113	4	STRG.13657.3,blat.proc3829877.chain_2111	2
scaffold_19	alternate_exon	11461314	11461425	-	asmbl_21596,asmbl_21598	none	blat.proc3829897.chain_3111,blat.proc3829897.chain_3115	2	STRG.22464.1,blat.proc3829897.chain_3112,blat.proc3829897.chain_3116	3
scaffold_6	starts_in_intron	5192096	5192096	+	asmbl_46862	none	Trinity_GG_4091_c0_g1_i1,blat.proc3829873.chain_3580	2	STRG.7489.1,STRG.7489.2,STRG.7489.3,STRG.7489.4,Trinity_GG_4091_c0_g1_i10,blat.proc3829873.chain_3581,blat.proc3829873.chain_3583,blat.proc3829873.chain_3585,blat.proc3829873.chain_3587	9
scaffold_18	retained_exon	4848999	4849092	+	asmbl_20600	none	STRG.21267.1,Trinity_GG_11716_c0_g1_i1,Trinity_GG_11716_c0_g1_i7,blat.proc3829881.chain_2169,blat.proc3829881.chain_2173	5	STRG.21267.3,Trinity_GG_11716_c0_g1_i6,blat.proc3829881.chain_2170	3
scaffold_24	spliced_intron	1064378	1064849	+	asmbl_32072	none	STRG.26360.2,Trinity_GG_14583_c0_g1_i2,blat.proc3829883.chain_3293	3	STRG.26360.1,Trinity_GG_14583_c0_g1_i1,Trinity_GG_14583_c0_g1_i4,blat.proc3829883.chain_3294,blat.proc3829883.chain_3296	5
scaffold_22	retained_exon	10044915	10045098	-	asmbl_30350	none	STRG.25340.2	1	STRG.25340.3	1
scaffold_1	skipped_exon	13565696	13566054	-	asmbl_838	none	STRG.971.1	1	blat.proc3829887.chain_857	1
scaffold_1	spliced_intron	13537791	13537907	-	asmbl_825,asmbl_826,asmbl_828	none	STRG.966.1,Trinity_GG_17468_c0_g1_i1,Trinity_GG_17468_c0_g1_i5,blat.proc3829887.chain_771,blat.proc3829887.chain_773,blat.proc3829887.chain_774	6	Trinity_GG_17468_c0_g1_i4,blat.proc3829887.chain_776	2
scaffold_24	starts_in_intron	3752290	3752290	-	asmbl_32835	none	blat.proc3829899.chain_3614	1	STRG.26554.1,STRG.26554.2,Trinity_GG_31855_c0_g1_i2,blat.proc3829899.chain_3613,blat.proc3829899.chain_3616	5
scaffold_8	skipped_exon	14569798	14572335	+	asmbl_52369,asmbl_52376	none	STRG.10535.1,blat.proc3829875.chain_3054,blat.proc3829875.chain_3057	3	STRG.10535.2	1
scaffold_15	alt_acceptor	15355387	15355388	+	asmbl_14705	none	STRG.18909.2,blat.proc3829879.chain_3499	2	blat.proc3829879.chain_3500	1
scaffold_24	alternate_exon	4319568	4319675	+	asmbl_32203	none	Trinity_GG_14664_c0_g1_i2,blat.proc3829883.chain_3427	2	STRG.26578.3	1
scaffold_7	retained_intron	12448231	12449017	-	asmbl_50038,asmbl_50041	none	blat.proc3829891.chain_1604,blat.proc3829891.chain_1606	2	STRG.9342.1,STRG.9342.2,Trinity_GG_22282_c1_g1_i12,Trinity_GG_22282_c1_g1_i7,blat.proc3829891.chain_1607,blat.proc3829891.chain_1608,blat.proc3829891.chain_1610,blat.proc3829891.chain_1611	8
scaffold_23	spliced_intron	1458422	1458455	+	asmbl_30633	none	blat.proc3829883.chain_2518	1	STRG.25600.1,blat.proc3829883.chain_2517	2
scaffold_23	spliced_intron	10897406	10897606	+	asmbl_31180	none	STRG.26269.1,blat.proc3829883.chain_3190	2	blat.proc3829883.chain_3189	1
scaffold_18	alternate_exon	8863589	8863626	-	asmbl_20068	none	blat.proc3829897.chain_2357	1	Trinity_GG_29045_c0_g1_i17,blat.proc3829897.chain_2361	2
scaffold_25	alternate_exon	4588970	4588997	-	asmbl_34196	none	STRG.27378.3,blat.proc3829901.chain_651	2	STRG.27378.1,STRG.27378.2,blat.proc3829901.chain_650	3
scaffold_16	alt_donor	8589716	8589717	+	asmbl_17212,asmbl_17218	none	STRG.19477.3,STRG.19477.8,blat.proc3829881.chain_353	3	STRG.19477.1,STRG.19477.7,blat.proc3829881.chain_354,blat.proc3829881.chain_359	4
scaffold_6	retained_intron	10718997	10719099	+	asmbl_47226,asmbl_47228	none	STRG.7885.1,STRG.7885.3,blat.proc3829875.chain_259,blat.proc3829875.chain_260	4	STRG.7885.2,blat.proc3829875.chain_261	2
scaffold_6	alt_acceptor	12534638	12534639	-	asmbl_48756	none	STRG.8003.3	1	STRG.8003.1,STRG.8003.2,blat.proc3829891.chain_297,blat.proc3829891.chain_298	4
scaffold_10	spliced_intron	2752450	2753447	+	asmbl_4286	none	blat.proc3829877.chain_746	1	STRG.12085.1,Trinity_GG_6698_c0_g1_i3,blat.proc3829877.chain_745,blat.proc3829877.chain_747	4
scaffold_11	starts_in_intron	3190543	3190543	-	asmbl_6518	none	blat.proc3829893.chain_1925	1	STRG.13438.1,blat.proc3829893.chain_1922	2
scaffold_13	starts_in_intron	3783827	3783827	-	asmbl_9541	none	blat.proc3829895.chain_407	1	STRG.15691.1,blat.proc3829895.chain_406	2
scaffold_12	alt_acceptor	16398667	16398668	+	asmbl_9133,asmbl_9135	none	STRG.15385.3,STRG.15385.4,Trinity_GG_8419_c0_g1_i6,blat.proc3829877.chain_3736	4	STRG.15385.1,STRG.15385.2,STRG.15385.5,STRG.15385.6,Trinity_GG_8419_c0_g1_i2,Trinity_GG_8419_c0_g1_i5,blat.proc3829877.chain_3733,blat.proc3829877.chain_3735	8
scaffold_11	alt_acceptor	5104247	5104248	+	asmbl_5502	none	STRG.13584.2,blat.proc3829877.chain_2026	2	STRG.13584.1,blat.proc3829877.chain_2025	2
scaffold_7	ends_in_intron	9686404	9686404	-	asmbl_49864	none	Trinity_GG_22180_c1_g1_i1,blat.proc3829891.chain_1409	2	STRG.9154.1,blat.proc3829891.chain_1410	2
scaffold_12	spliced_intron	7172893	7173215	+	asmbl_8683,asmbl_8685,asmbl_8686	none	STRG.14775.2,blat.proc3829877.chain_3240,blat.proc3829877.chain_3241,blat.proc3829877.chain_3242	4	blat.proc3829877.chain_3243	1
scaffold_23	alt_acceptor	2380797	2380798	+	asmbl_30700	none	STRG.25691.1	1	blat.proc3829883.chain_2599	1
scaffold_26	alt_acceptor	7544983	7544984	+	asmbl_35650	none	Trinity_GG_15687_c0_g1_i2,blat.proc3829885.chain_1384	2	STRG.28370.1	1
scaffold_21	spliced_intron	1054388	1054575	-	asmbl_27402,asmbl_27404,asmbl_27406,asmbl_27407	none	STRG.23776.1,STRG.23776.4,Trinity_GG_30261_c0_g1_i4,Trinity_GG_30261_c0_g1_i9,blat.proc3829899.chain_852,blat.proc3829899.chain_854	6	Trinity_GG_30261_c0_g1_i7,blat.proc3829899.chain_851	2
scaffold_10	retained_intron	12726885	12726904	+	asmbl_4812	none	STRG.12846.1	1	STRG.12846.2	1
scaffold_3	spliced_intron	3258676	3259547	+	asmbl_39897,asmbl_39899	none	STRG.3087.1,STRG.3087.6	2	blat.proc3829871.chain_3297	1
scaffold_4	alt_acceptor	17631814	17631815	-	asmbl_42042	none	STRG.5362.1,blat.proc3829889.chain_1350	2	STRG.5362.2,STRG.5362.3	2
scaffold_23	retained_intron	6289367	6289481	-	asmbl_31689,asmbl_31690,asmbl_31693	none	Trinity_GG_31552_c0_g1_i3,Trinity_GG_31552_c0_g1_i6,blat.proc3829899.chain_3103,blat.proc3829899.chain_3105,blat.proc3829899.chain_3107	5	STRG.25954.1,STRG.25954.2,Trinity_GG_31552_c0_g1_i2,Trinity_GG_31552_c0_g1_i4,Trinity_GG_31552_c0_g1_i5,Trinity_GG_31552_c0_g1_i7,blat.proc3829899.chain_3101,blat.proc3829899.chain_3102,blat.proc3829899.chain_3104,blat.proc3829899.chain_3106	10
scaffold_18	retained_intron	1624835	1624863	-	asmbl_19665	none	Trinity_GG_28759_c0_g1_i1	1	blat.proc3829897.chain_1836	1
scaffold_7	alt_donor	9784425	9784426	-	asmbl_49876,asmbl_49877	none	STRG.9164.1,STRG.9164.2,blat.proc3829891.chain_1403,blat.proc3829891.chain_1404	4	STRG.9164.3,STRG.9164.4	2
scaffold_13	alt_donor	2277260	2277261	-	asmbl_9401,asmbl_9406	none	STRG.15533.3,blat.proc3829895.chain_309,blat.proc3829895.chain_313	3	blat.proc3829895.chain_308	1
scaffold_15	alt_acceptor	11492018	11492019	-	asmbl_15532	none	STRG.18603.1,blat.proc3829895.chain_3387	2	STRG.18603.2	1
scaffold_15	spliced_intron	11402046	11402524	-	asmbl_15510	none	STRG.18596.5,blat.proc3829895.chain_3374	2	STRG.18596.2,blat.proc3829895.chain_3373	2
scaffold_19	alt_donor	10303465	10303466	+	asmbl_22449	none	STRG.22402.1,blat.proc3829881.chain_3351	2	STRG.22402.4,Trinity_GG_12396_c0_g1_i3,blat.proc3829881.chain_3352	3
scaffold_21	retained_intron	6617614	6617692	+	asmbl_28692	none	blat.proc3829883.chain_1356	1	STRG.24174.1,blat.proc3829883.chain_1357,blat.proc3829883.chain_1358,blat.proc3829883.chain_1359	4
scaffold_2	retained_intron	13064373	13064567	+	asmbl_24843	none	Trinity_GG_1323_c0_g1_i2,Trinity_GG_1323_c0_g1_i8,blat.proc3829871.chain_2460,blat.proc3829871.chain_2462	4	STRG.2330.1,STRG.2330.2,blat.proc3829871.chain_2456,blat.proc3829871.chain_2457,blat.proc3829871.chain_2458,blat.proc3829871.chain_2461	6
scaffold_13	spliced_intron	16460089	16460350	-	asmbl_10276	none	STRG.16689.3,blat.proc3829895.chain_1357	2	STRG.16689.2,blat.proc3829895.chain_1356	2
scaffold_23	retained_exon	9119518	9119574	-	asmbl_31807	none	STRG.26140.1,blat.proc3829899.chain_3147	2	blat.proc3829899.chain_3146	1
scaffold_14	retained_exon	3551904	3551989	-	asmbl_13002,asmbl_13003	none	STRG.16931.1,STRG.16931.2,blat.proc3829895.chain_1640,blat.proc3829895.chain_1641	4	STRG.16931.3	1
scaffold_21	starts_in_intron	8529079	8529079	+	asmbl_28832	none	blat.proc3829883.chain_1393	1	STRG.24375.1,blat.proc3829883.chain_1389,blat.proc3829883.chain_1391,blat.proc3829883.chain_1392	4
scaffold_15	alternate_exon	8984217	8984399	+	asmbl_14319	none	STRG.18435.2	1	blat.proc3829879.chain_3028	1
scaffold_15	retained_intron	15502347	15502438	+	asmbl_14752	none	Trinity_GG_10382_c0_g1_i6,blat.proc3829879.chain_3536	2	STRG.18940.1,STRG.18940.2,Trinity_GG_10382_c0_g1_i1,Trinity_GG_10382_c0_g1_i2,Trinity_GG_10382_c0_g1_i3,Trinity_GG_10382_c0_g1_i5,blat.proc3829879.chain_3532,blat.proc3829879.chain_3533,blat.proc3829879.chain_3534,blat.proc3829879.chain_3535,blat.proc3829879.chain_3537	11
scaffold_1	skipped_exon	16096299	16097022	-	asmbl_976,asmbl_977,asmbl_978	none	STRG.1128.1,STRG.1128.2,blat.proc3829887.chain_1023,blat.proc3829887.chain_1025,blat.proc3829887.chain_1026	5	blat.proc3829887.chain_1024	1
scaffold_3	alternate_exon	5683700	5684814	-	asmbl_38811	none	STRG.3230.2,blat.proc3829887.chain_2977	2	STRG.3230.1,Trinity_GG_18771_c0_g1_i2,blat.proc3829887.chain_2978	3
scaffold_17	spliced_intron	11050768	11050865	+	asmbl_18325	none	STRG.20651.2	1	STRG.20651.1,Trinity_GG_11327_c0_g1_i6,blat.proc3829881.chain_1493,blat.proc3829881.chain_1494,blat.proc3829881.chain_1495	5
scaffold_1	starts_in_intron	1826087	1826087	-	asmbl_87	none	Trinity_GG_17084_c0_g1_i2,blat.proc3829887.chain_28	2	STRG.113.1,Trinity_GG_17084_c0_g1_i1,blat.proc3829887.chain_29	3
scaffold_7	ends_in_intron	12642267	12642267	+	asmbl_51165	none	blat.proc3829875.chain_1774	1	STRG.9366.1,blat.proc3829875.chain_1775	2
scaffold_7	retained_exon	7245092	7245163	+	asmbl_50798	none	STRG.8972.1,blat.proc3829875.chain_1409	2	STRG.8972.2,blat.proc3829875.chain_1408	2
scaffold_3	alternate_exon	6190088	6196909	-	asmbl_38863,asmbl_38866	none	STRG.3262.1,STRG.3262.3,blat.proc3829887.chain_3014,blat.proc3829887.chain_3015	4	STRG.3262.4	1
scaffold_3	starts_in_intron	14519945	14519945	-	asmbl_39337	none	Trinity_GG_19119_c0_g1_i4,blat.proc3829887.chain_3618	2	STRG.3789.1,Trinity_GG_19119_c0_g1_i1,Trinity_GG_19119_c0_g1_i2,Trinity_GG_19119_c0_g1_i5,blat.proc3829887.chain_3616,blat.proc3829887.chain_3617,blat.proc3829887.chain_3619	7
scaffold_25	alt_acceptor	5557699	5557700	-	asmbl_34240	none	STRG.27437.1,blat.proc3829901.chain_756	2	STRG.27437.3	1
scaffold_26	spliced_intron	7900944	7901028	+	asmbl_35679,asmbl_35681	none	STRG.28392.1,STRG.28392.2,blat.proc3829885.chain_1420	3	blat.proc3829885.chain_1418	1
scaffold_9	retained_intron	9648651	9648733	+	asmbl_54204	none	STRG.11328.2	1	STRG.11328.1,blat.proc3829877.chain_89	2
scaffold_10	alt_acceptor	3421168	3421169	-	asmbl_3120	none	STRG.12164.2,blat.proc3829893.chain_630	2	STRG.12164.1,blat.proc3829893.chain_629	2
scaffold_12	alternate_exon	4723970	4724663	-	asmbl_7569	none	STRG.14636.1	1	blat.proc3829893.chain_3003	1
scaffold_8	spliced_intron	9904299	9904378	-	asmbl_53060,asmbl_53064	none	STRG.10235.1,blat.proc3829891.chain_2394,blat.proc3829891.chain_2395	3	Trinity_GG_22721_c0_g1_i2,blat.proc3829891.chain_2393	2
scaffold_2320	starts_in_intron	1004	1004	+	asmbl_31994	none	Trinity_GG_16961_c0_g1_i1	1	blat.proc3829885.chain_3597	1
scaffold_27	alternate_exon	9098170	9098350	+	asmbl_36458,asmbl_36459	none	blat.proc3829885.chain_2318,blat.proc3829885.chain_2319	2	blat.proc3829885.chain_2320	1
scaffold_7	alt_acceptor	1236327	1236328	+	asmbl_50473,asmbl_50478	none	STRG.8627.3,Trinity_GG_4740_c0_g1_i10,Trinity_GG_4740_c1_g1_i1,blat.proc3829875.chain_1053	4	STRG.8627.7,STRG.8627.8,STRG.8627.9,Trinity_GG_4740_c0_g1_i20,blat.proc3829875.chain_1050	5
scaffold_2	alt_donor	15460782	15460783	-	asmbl_23645	none	Trinity_GG_18374_c0_g1_i1,blat.proc3829887.chain_2323	2	STRG.2494.1	1
scaffold_27	spliced_intron	3741581	3742122	-	asmbl_36872,asmbl_36874	none	STRG.28820.1,STRG.28820.2,blat.proc3829901.chain_1967,blat.proc3829901.chain_1968	4	STRG.28820.3,blat.proc3829901.chain_1965,blat.proc3829901.chain_1966	3
scaffold_11	alternate_exon	13651633	13651672	-	asmbl_7129	none	STRG.14211.2,blat.proc3829893.chain_2581	2	STRG.14211.1,blat.proc3829893.chain_2583	2
scaffold_18	spliced_intron	823178	823278	+	asmbl_20351,asmbl_20352,asmbl_20354,asmbl_20355	none	STRG.20996.1,STRG.20996.2,blat.proc3829881.chain_1778,blat.proc3829881.chain_1779,blat.proc3829881.chain_1781,blat.proc3829881.chain_1782	6	Trinity_GG_11513_c0_g1_i7,blat.proc3829881.chain_1780	2
scaffold_17	ends_in_intron	6203556	6203556	-	asmbl_19018	none	Trinity_GG_28414_c0_g1_i1,blat.proc3829897.chain_1240	2	STRG.20281.1,blat.proc3829897.chain_1239	2
scaffold_28	spliced_intron	7156851	7156991	+	asmbl_38329,asmbl_38330,asmbl_38331,asmbl_38332	none	STRG.29751.1,STRG.29751.2,STRG.29751.3,STRG.29751.4,blat.proc3829885.chain_2848,blat.proc3829885.chain_2850,blat.proc3829885.chain_2852	7	blat.proc3829885.chain_2849,blat.proc3829885.chain_2853	2
scaffold_16	retained_intron	10448144	10448354	+	asmbl_17335,asmbl_17336	none	STRG.19602.1,STRG.19602.3,Trinity_GG_10708_c1_g1_i1,blat.proc3829881.chain_427	4	STRG.19602.5	1
scaffold_14	alternate_exon	2249788	2249830	-	asmbl_12905,asmbl_12906	none	STRG.16817.2,Trinity_GG_26430_c0_g1_i2,blat.proc3829895.chain_1514	3	STRG.16817.1,Trinity_GG_26430_c0_g1_i1,Trinity_GG_26430_c0_g1_i3,blat.proc3829895.chain_1512,blat.proc3829895.chain_1513	5
scaffold_16	alternate_exon	11333899	11335310	+	asmbl_17382	none	STRG.19652.1,blat.proc3829881.chain_553	2	STRG.19652.4,STRG.19652.5,blat.proc3829881.chain_554,blat.proc3829881.chain_555	4
scaffold_19	spliced_intron	12491455	12492121	+	asmbl_22618	none	STRG.22568.4,blat.proc3829881.chain_3537	2	STRG.22568.3,blat.proc3829881.chain_3534	2
scaffold_5	spliced_intron	14569065	14569227	-	asmbl_45982	none	STRG.6648.2	1	blat.proc3829889.chain_2695	1
scaffold_27	alternate_exon	2997744	2997815	+	asmbl_36122	none	blat.proc3829885.chain_1841	1	STRG.28767.1,STRG.28767.2,STRG.28767.3,Trinity_GG_15918_c0_g1_i12,blat.proc3829885.chain_1840,blat.proc3829885.chain_1842,blat.proc3829885.chain_1843,blat.proc3829885.chain_1845,blat.proc3829885.chain_1848,blat.proc3829885.chain_1849	10
scaffold_1	starts_in_intron	17675319	17675319	-	asmbl_1058	none	blat.proc3829887.chain_1130	1	STRG.1236.1,blat.proc3829887.chain_1132	2
scaffold_5	alt_acceptor	14205735	14205736	-	asmbl_45973	none	STRG.6620.1	1	STRG.6620.2	1
scaffold_17	alt_donor	12090132	12090133	+	asmbl_18380	none	STRG.20727.3	1	STRG.20727.2	1
scaffold_4	alt_acceptor	8806927	8806928	-	asmbl_41529	none	STRG.4692.1	1	STRG.4692.2	1
scaffold_4	retained_intron	12691056	12691283	-	asmbl_41696	none	STRG.4910.2,blat.proc3829889.chain_922	2	STRG.4910.1,blat.proc3829889.chain_919,blat.proc3829889.chain_920	3
scaffold_4	retained_intron	19017909	19017987	-	asmbl_42147	none	STRG.5483.4	1	STRG.5483.2	1
scaffold_13	spliced_intron	2272160	2272772	-	asmbl_9399,asmbl_9400,asmbl_9401,asmbl_9402,asmbl_9406	none	STRG.15533.1,STRG.15533.2,STRG.15533.3,Trinity_GG_25734_c0_g1_i5,blat.proc3829895.chain_309,blat.proc3829895.chain_311,blat.proc3829895.chain_312,blat.proc3829895.chain_313,blat.proc3829895.chain_316	9	blat.proc3829895.chain_308,blat.proc3829895.chain_310,blat.proc3829895.chain_317	3
scaffold_3	skipped_exon	1757943	1758479	+	asmbl_39829	none	STRG.2991.2	1	STRG.2991.1,blat.proc3829871.chain_3179,blat.proc3829871.chain_3180,blat.proc3829871.chain_3181,blat.proc3829871.chain_3184,blat.proc3829871.chain_3185	6
scaffold_21	alternate_exon	3829010	3829125	-	asmbl_27576,asmbl_27579	none	STRG.23959.4,blat.proc3829899.chain_1041,blat.proc3829899.chain_1046	3	STRG.23959.1,STRG.23959.2,STRG.23959.3,blat.proc3829899.chain_1042,blat.proc3829899.chain_1044,blat.proc3829899.chain_1045	6
scaffold_11	alternate_exon	11783655	11783918	+	asmbl_5962	none	STRG.14087.3	1	STRG.14087.1,STRG.14087.2,STRG.14087.5	3
scaffold_6	starts_in_intron	6765994	6765994	+	asmbl_46946	none	STRG.7586.3,Trinity_GG_4150_c2_g1_i1,blat.proc3829873.chain_3692	3	STRG.7586.2	1
scaffold_26	retained_intron	2261353	2261420	+	asmbl_35271	none	STRG.27940.1	1	STRG.27940.2	1
scaffold_19	alt_acceptor	5155499	5155500	+	asmbl_22157	none	STRG.22072.4,blat.proc3829881.chain_3011	2	STRG.22072.1,STRG.22072.3,blat.proc3829881.chain_3013,blat.proc3829881.chain_3014	4
scaffold_26	alt_donor	7487924	7487925	+	asmbl_35643	none	STRG.28365.2,blat.proc3829885.chain_1383	2	blat.proc3829885.chain_1381	1
scaffold_17	starts_in_intron	8718068	8718068	+	asmbl_18142	none	STRG.20468.1	1	blat.proc3829881.chain_1211	1
scaffold_7	alt_acceptor	12422439	12422440	+	asmbl_51141	none	STRG.9335.3	1	STRG.9335.1,STRG.9335.2,blat.proc3829875.chain_1793,blat.proc3829875.chain_1794	4
scaffold_11	alt_donor	5139850	5139851	+	asmbl_5505	none	STRG.13589.1,Trinity_GG_7456_c0_g1_i2,blat.proc3829877.chain_2045	3	STRG.13589.2,Trinity_GG_7456_c0_g1_i1,blat.proc3829877.chain_2046	3
scaffold_2	ends_in_intron	17839693	17839693	-	asmbl_23770	none	Trinity_GG_18481_c0_g1_i4,blat.proc3829887.chain_2494	2	STRG.2671.1,blat.proc3829887.chain_2495	2
scaffold_19	ends_in_intron	6203856	6203856	+	asmbl_22196	none	blat.proc3829881.chain_3097,blat.proc3829881.chain_3098	2	STRG.22140.2,blat.proc3829881.chain_3095	2
scaffold_5	alt_acceptor	4755375	4755376	+	asmbl_43962	none	Trinity_GG_3243_c0_g1_i3	1	STRG.5927.1,blat.proc3829873.chain_2070,blat.proc3829873.chain_2071	3
scaffold_7	spliced_intron	11145104	11146469	+	asmbl_51030,asmbl_51034	none	STRG.9251.1,blat.proc3829875.chain_1726,blat.proc3829875.chain_1728	3	STRG.9251.2,blat.proc3829875.chain_1725,blat.proc3829875.chain_1727,blat.proc3829875.chain_1729,blat.proc3829875.chain_1730	5
scaffold_13	skipped_exon	7268676	7269850	-	asmbl_9830,asmbl_9831	none	blat.proc3829895.chain_807,blat.proc3829895.chain_809	2	STRG.16009.1,blat.proc3829895.chain_808,blat.proc3829895.chain_811	3
scaffold_22	alternate_exon	7439490	7440394	+	asmbl_29475,asmbl_29477	none	STRG.25067.2,STRG.25067.3,blat.proc3829883.chain_2138	3	STRG.25067.1	1
scaffold_6	starts_in_intron	3064725	3064725	+	asmbl_46756	none	STRG.7310.2,blat.proc3829873.chain_3430	2	STRG.7310.1,blat.proc3829873.chain_3431	2
scaffold_4	retained_exon	3252036	3252365	-	asmbl_41171	none	STRG.4249.1,blat.proc3829889.chain_380	2	STRG.4249.2	1
scaffold_4	retained_intron	13762275	13762795	-	asmbl_41751	none	blat.proc3829889.chain_1051	1	STRG.4997.1,STRG.4997.2,blat.proc3829889.chain_1048,blat.proc3829889.chain_1049,blat.proc3829889.chain_1050	5
scaffold_7	alt_acceptor	129710	129711	-	asmbl_49477	none	STRG.8585.8	1	STRG.8585.1,blat.proc3829891.chain_992,blat.proc3829891.chain_998	3
scaffold_28	retained_intron	8422122	8422142	+	asmbl_38442	none	Trinity_GG_16560_c0_g1_i1,Trinity_GG_16560_c0_g1_i2,blat.proc3829885.chain_2993	3	STRG.29896.1	1
scaffold_8	retained_intron	2690400	2690454	+	asmbl_51726	none	blat.proc3829875.chain_2211	1	STRG.9799.3	1
scaffold_2	alt_donor	17456033	17456034	+	asmbl_25202	none	STRG.2630.1	1	STRG.2630.2,blat.proc3829871.chain_2818	2
scaffold_13	alt_donor	7443072	7443073	+	asmbl_11034	none	STRG.16025.1	1	STRG.16025.2,blat.proc3829879.chain_783,blat.proc3829879.chain_784	3
scaffold_21	retained_intron	10498503	10498605	-	asmbl_28073	none	Trinity_GG_30713_c0_g1_i3,blat.proc3829899.chain_1646	2	STRG.24504.1,blat.proc3829899.chain_1649,blat.proc3829899.chain_1650	3
scaffold_17	alt_donor	2565384	2565385	+	asmbl_17795	none	STRG.20039.2	1	STRG.20039.1,blat.proc3829881.chain_840	2
scaffold_5	retained_intron	1136209	1136301	-	asmbl_45219	none	STRG.5655.1	1	STRG.5655.2	1
scaffold_20	skipped_exon	8018205	8018985	-	asmbl_26877	none	STRG.23343.1	1	STRG.23343.2,blat.proc3829899.chain_386	2
scaffold_22	retained_exon	9718551	9718655	+	asmbl_29601	none	STRG.25292.4	1	STRG.25292.2	1
scaffold_11	retained_intron	7924431	7924529	+	asmbl_5664	none	STRG.13793.2,Trinity_GG_7594_c0_g1_i2,blat.proc3829877.chain_2264	3	STRG.13793.3,Trinity_GG_7594_c0_g1_i4,blat.proc3829877.chain_2266	3
scaffold_20	retained_intron	7857888	7858063	-	asmbl_26857,asmbl_26859	none	STRG.23322.4,blat.proc3829899.chain_377	2	STRG.23322.1,STRG.23322.2,STRG.23322.3,blat.proc3829899.chain_376,blat.proc3829899.chain_378	5
scaffold_3	alt_acceptor	17834325	17834326	+	asmbl_40658,asmbl_40660,asmbl_40662	none	STRG.3994.1,blat.proc3829873.chain_397,blat.proc3829873.chain_398,blat.proc3829873.chain_400	4	STRG.3994.2	1
scaffold_14	ends_in_intron	8038520	8038520	+	asmbl_12178	none	Trinity_GG_9491_c0_g1_i1,blat.proc3829879.chain_1973	2	blat.proc3829879.chain_1976	1
scaffold_20	alternate_exon	6948706	6948956	-	asmbl_26778,asmbl_26779	none	blat.proc3829899.chain_237,blat.proc3829899.chain_239	2	STRG.23254.2,STRG.23254.3,STRG.23254.5,blat.proc3829899.chain_235	4
scaffold_10	spliced_intron	4159649	4159782	-	asmbl_3183,asmbl_3185	none	STRG.12242.2,STRG.12242.3,blat.proc3829893.chain_687	3	blat.proc3829893.chain_686	1
scaffold_23	alt_acceptor	10893556	10893557	-	asmbl_31881	none	STRG.26271.3	1	STRG.26271.1,STRG.26271.2,blat.proc3829899.chain_3304,blat.proc3829899.chain_3305	4
scaffold_26	starts_in_intron	8634293	8634293	-	asmbl_35016	none	blat.proc3829901.chain_1560	1	STRG.28431.1,blat.proc3829901.chain_1559	2
scaffold_1	starts_in_intron	16484564	16484564	-	asmbl_994	none	blat.proc3829887.chain_1056	1	STRG.1157.1,STRG.1157.2,blat.proc3829887.chain_1053,blat.proc3829887.chain_1054,blat.proc3829887.chain_1057	5
scaffold_9	alternate_exon	1650902	1650972	-	asmbl_54793	none	STRG.10844.2,blat.proc3829891.chain_2994	2	STRG.10844.1,blat.proc3829891.chain_2993	2
scaffold_8	spliced_intron	12693248	12693352	+	asmbl_52319,asmbl_52320,asmbl_52321	none	STRG.10436.1,STRG.10436.2,blat.proc3829875.chain_2949	3	blat.proc3829875.chain_2944,blat.proc3829875.chain_2947	2
scaffold_15	starts_in_intron	8986186	8986186	+	asmbl_14320	none	blat.proc3829879.chain_3028	1	STRG.18435.1,blat.proc3829879.chain_3027	2
scaffold_14	retained_intron	1178420	1178543	+	asmbl_11788	none	STRG.16762.2,Trinity_GG_9223_c0_g1_i4,blat.proc3829879.chain_1485	3	STRG.16762.1,Trinity_GG_9223_c0_g1_i3,blat.proc3829879.chain_1486	3
scaffold_24	alternate_exon	10484229	10484290	+	asmbl_32571,asmbl_32572,asmbl_32578,asmbl_32579	none	STRG.27000.1,STRG.27000.2,Trinity_GG_14920_c0_g1_i2,Trinity_GG_14920_c0_g1_i5,Trinity_GG_14920_c0_g1_i6,Trinity_GG_14920_c0_g1_i7,blat.proc3829885.chain_126,blat.proc3829885.chain_127,blat.proc3829885.chain_128,blat.proc3829885.chain_130	10	STRG.27000.3,STRG.27000.4,STRG.27000.5,Trinity_GG_14920_c0_g1_i4,blat.proc3829885.chain_129	5
scaffold_5	alternate_exon	12916885	12918003	-	asmbl_45872	none	STRG.6515.1,blat.proc3829889.chain_2569	2	STRG.6515.2,blat.proc3829889.chain_2568,blat.proc3829889.chain_2570	3
scaffold_19	spliced_intron	12492311	12492484	+	asmbl_22615,asmbl_22616,asmbl_22617,asmbl_22618,asmbl_22622	none	STRG.22568.1,STRG.22568.3,STRG.22568.4,STRG.22568.5,STRG.22568.6,blat.proc3829881.chain_3533,blat.proc3829881.chain_3534,blat.proc3829881.chain_3535,blat.proc3829881.chain_3537	9	blat.proc3829881.chain_3536	1
scaffold_22	alt_acceptor	7901759	7901760	-	asmbl_30207	none	STRG.25123.3	1	STRG.25123.1	1
scaffold_16	ends_in_intron	15218987	15218987	+	asmbl_17523	none	blat.proc3829881.chain_660	1	STRG.19866.1,STRG.19866.2	2
scaffold_26	retained_exon	4332659	4333373	-	asmbl_34820	none	STRG.28149.4	1	STRG.28149.2	1
scaffold_18	skipped_exon	3916195	3918126	-	asmbl_19823	none	STRG.21192.3	1	STRG.21192.2,STRG.21192.4,STRG.21192.5,blat.proc3829897.chain_2089	4
scaffold_18	alternate_exon	8722739	8722773	-	asmbl_20054	none	STRG.21532.2	1	STRG.21532.1,blat.proc3829897.chain_2346	2
scaffold_6	spliced_intron	13657677	13658201	-	asmbl_48866	none	STRG.8100.3	1	STRG.8100.1	1
scaffold_4	starts_in_intron	3229893	3229893	-	asmbl_41157	none	blat.proc3829889.chain_342	1	STRG.4246.1,blat.proc3829889.chain_340,blat.proc3829889.chain_344	3
scaffold_8	retained_intron	11195066	11195193	+	asmbl_52190	none	STRG.10325.1,blat.proc3829875.chain_2851	2	STRG.10325.2	1
scaffold_2	alt_donor	17479006	17479007	-	asmbl_23740	none	STRG.2632.3	1	STRG.2632.1,STRG.2632.2,Trinity_GG_18470_c1_g1_i1,blat.proc3829887.chain_2479	4
scaffold_1	spliced_intron	20132580	20132927	+	asmbl_2594	none	STRG.1378.1,Trinity_GG_783_c0_g2_i1,blat.proc3829871.chain_1381	3	Trinity_GG_783_c0_g1_i1,blat.proc3829871.chain_1380	2
scaffold_14	retained_intron	15565811	15565918	+	asmbl_12609	none	STRG.17784.1	1	STRG.17784.3	1
scaffold_27	spliced_intron	3742551	3742650	-	asmbl_36872,asmbl_36873	none	STRG.28820.2,STRG.28820.3,blat.proc3829901.chain_1965,blat.proc3829901.chain_1968	4	STRG.28820.1,blat.proc3829901.chain_1966,blat.proc3829901.chain_1967	3
scaffold_340	alt_acceptor	3407	3408	+	asmbl_40964,asmbl_40967	none	STRG.30267.1,STRG.30267.2	2	blat.proc3829885.chain_3313	1
scaffold_17	alternate_exon	9030392	9031146	-	asmbl_19186	none	STRG.20520.2,blat.proc3829897.chain_1455	2	STRG.20520.3,STRG.20520.4	2
scaffold_20	spliced_intron	2137292	2137342	+	asmbl_25632	none	STRG.22939.1	1	STRG.22939.2,Trinity_GG_12651_c1_g1_i1,blat.proc3829883.chain_81	3
scaffold_11	alt_donor	3775786	3775787	-	asmbl_6551	none	STRG.13488.1,blat.proc3829893.chain_1962	2	STRG.13488.3,STRG.13488.4	2
scaffold_3030	spliced_intron	488	641	-	asmbl_40864	none	STRG.30790.2	1	STRG.30790.1,Trinity_GG_34275_c0_g1_i1,blat.proc3829901.chain_3713	3
scaffold_11	spliced_intron	3698054	3698259	+	asmbl_5416	none	STRG.13477.1,blat.proc3829877.chain_1950	2	Trinity_GG_7399_c0_g1_i1,blat.proc3829877.chain_1951	2
scaffold_26	starts_in_intron	4137096	4137096	-	asmbl_34806,asmbl_34807	none	STRG.28100.2,blat.proc3829901.chain_1327	2	STRG.28100.3,blat.proc3829901.chain_1328	2
scaffold_7	ends_in_intron	1447349	1447349	-	asmbl_49549	none	STRG.8632.2	1	STRG.8632.1,Trinity_GG_21961_c0_g1_i2,blat.proc3829891.chain_1033	3
scaffold_5	starts_in_intron	19029999	19029999	-	asmbl_46265	none	STRG.7018.1	1	blat.proc3829889.chain_3008	1
scaffold_12	ends_in_intron	9040992	9040992	+	asmbl_8815	none	STRG.14901.1,blat.proc3829877.chain_3447	2	STRG.14901.2,Trinity_GG_8258_c1_g1_i1,blat.proc3829877.chain_3448	3
scaffold_10	spliced_intron	556785	556911	-	asmbl_2885	none	STRG.11928.1,Trinity_GG_23640_c0_g1_i2,blat.proc3829893.chain_356	3	STRG.11928.2,blat.proc3829893.chain_358	2
scaffold_10	skipped_exon	6017831	6018837	-	asmbl_3334	none	STRG.12424.2,blat.proc3829893.chain_895	2	STRG.12424.1,blat.proc3829893.chain_896	2
scaffold_15	retained_exon	2990689	2990754	-	asmbl_15078	none	STRG.18069.2,blat.proc3829895.chain_2806	2	STRG.18069.1,blat.proc3829895.chain_2805	2
scaffold_12	retained_intron	10384453	10384526	+	asmbl_8888	none	blat.proc3829877.chain_3516	1	STRG.14999.1,blat.proc3829877.chain_3517	2
scaffold_25	starts_in_intron	3634284	3634284	+	asmbl_33437	none	blat.proc3829885.chain_340	1	STRG.27294.1,STRG.27294.2,STRG.27294.3,blat.proc3829885.chain_341,blat.proc3829885.chain_342,blat.proc3829885.chain_343	6
scaffold_21	alt_donor	2486993	2486994	+	asmbl_28413	none	STRG.23860.1,blat.proc3829883.chain_1004	2	STRG.23860.2	1
scaffold_2	retained_intron	15686309	15686390	+	asmbl_25093	none	blat.proc3829871.chain_2713	1	STRG.2521.1,STRG.2521.3,Trinity_GG_1432_c0_g1_i1,Trinity_GG_1432_c0_g1_i4,blat.proc3829871.chain_2712	5
scaffold_12	retained_intron	8828274	8828345	+	asmbl_8798	none	blat.proc3829877.chain_3419	1	STRG.14876.1,blat.proc3829877.chain_3418	2
scaffold_25	alt_acceptor	4820533	4820534	+	asmbl_33533,asmbl_33538	none	STRG.27398.3,STRG.27398.4,Trinity_GG_15069_c0_g1_i2,blat.proc3829885.chain_359	4	STRG.27398.1,STRG.27398.2,Trinity_GG_15069_c0_g1_i1,Trinity_GG_15069_c0_g1_i3,blat.proc3829885.chain_358,blat.proc3829885.chain_360	6
scaffold_21	starts_in_intron	11270360	11270360	-	asmbl_28143	none	blat.proc3829899.chain_1694	1	STRG.24588.1,STRG.24588.2,blat.proc3829899.chain_1688,blat.proc3829899.chain_1689,blat.proc3829899.chain_1690,blat.proc3829899.chain_1691,blat.proc3829899.chain_1692,blat.proc3829899.chain_1695	8
scaffold_20	starts_in_intron	2075949	2075949	+	asmbl_25623	none	blat.proc3829883.chain_77	1	STRG.22928.1,STRG.22928.2,blat.proc3829883.chain_75	3
scaffold_5	skipped_exon	13235186	13235685	+	asmbl_44536,asmbl_44537	none	STRG.6553.1,STRG.6553.2,blat.proc3829873.chain_2683,blat.proc3829873.chain_2685	4	STRG.6553.3	1
scaffold_3	alt_acceptor	13895669	13895670	+	asmbl_40424,asmbl_40426,asmbl_40427	none	STRG.3737.1,blat.proc3829873.chain_143,blat.proc3829873.chain_144,blat.proc3829873.chain_145	4	STRG.3737.2	1
scaffold_14	retained_exon	10019063	10019103	-	asmbl_13389	none	STRG.17358.3,blat.proc3829895.chain_2065	2	STRG.17358.2,blat.proc3829895.chain_2066	2
scaffold_21	alt_acceptor	1151164	1151165	+	asmbl_28350	none	STRG.23774.2,Trinity_GG_13181_c0_g1_i2,blat.proc3829883.chain_940	3	STRG.23774.3	1
scaffold_1	retained_intron	907269	907587	-	asmbl_34	none	STRG.45.2	1	STRG.45.1	1
scaffold_18	retained_intron	7686561	7686708	+	asmbl_20801,asmbl_20802,asmbl_20808,asmbl_20810	none	STRG.21464.2,STRG.21464.4,Trinity_GG_11863_c0_g1_i9,blat.proc3829881.chain_2433,blat.proc3829881.chain_2434,blat.proc3829881.chain_2435,blat.proc3829881.chain_2436	7	STRG.21464.3,blat.proc3829881.chain_2440	2
scaffold_1	alt_acceptor	13634811	13634812	+	asmbl_2295	none	STRG.978.2	1	STRG.978.1	1
scaffold_28	alt_donor	5638066	5638067	-	asmbl_37633,asmbl_37634	none	STRG.29677.4,blat.proc3829901.chain_2824	2	STRG.29677.1,STRG.29677.2,STRG.29677.3,Trinity_GG_33665_c0_g1_i3,blat.proc3829901.chain_2822,blat.proc3829901.chain_2823,blat.proc3829901.chain_2825,blat.proc3829901.chain_2827	8
scaffold_18	alternate_exon	6776521	6776590	-	asmbl_19951	none	STRG.21372.1,blat.proc3829897.chain_2242	2	STRG.21372.2	1
scaffold_19	alternate_exon	1660976	1661009	-	asmbl_21244	none	STRG.21913.2	1	STRG.21913.1,blat.proc3829897.chain_2682	2
scaffold_12	spliced_intron	10187905	10188527	-	asmbl_7858,asmbl_7861,asmbl_7862	none	STRG.14979.4,STRG.14979.5,STRG.14979.6,blat.proc3829893.chain_3400	4	STRG.14979.3,blat.proc3829893.chain_3402	2
scaffold_22	spliced_intron	3532808	3532917	-	asmbl_29939	none	STRG.24783.1	1	Trinity_GG_30852_c0_g1_i1	1
scaffold_12	alt_acceptor	10187622	10187623	-	asmbl_7861	none	STRG.14979.6	1	STRG.14979.1,STRG.14979.2,STRG.14979.5,blat.proc3829893.chain_3400,blat.proc3829893.chain_3401,blat.proc3829893.chain_3403,blat.proc3829893.chain_3405	7
scaffold_2	alt_acceptor	1598015	1598016	+	asmbl_24239	none	blat.proc3829871.chain_1666	1	STRG.1628.1,blat.proc3829871.chain_1668,blat.proc3829871.chain_1669	3
scaffold_10	starts_in_intron	5177629	5177629	+	asmbl_4431	none	Trinity_GG_6845_c1_g1_i1,blat.proc3829877.chain_986	2	STRG.12337.1,blat.proc3829877.chain_984,blat.proc3829877.chain_985	3
scaffold_13	alt_acceptor	15512024	15512025	+	asmbl_11494	none	STRG.16580.4	1	STRG.16580.1,blat.proc3829879.chain_1334,blat.proc3829879.chain_1335	3
scaffold_2	skipped_exon	14231852	14232094	-	asmbl_23604	none	STRG.2418.1	1	blat.proc3829887.chain_2303	1
scaffold_4	alternate_exon	14286305	14286419	-	asmbl_41783,asmbl_41784	none	STRG.5038.1,STRG.5038.3,blat.proc3829889.chain_1088	3	STRG.5038.2,STRG.5038.4,blat.proc3829889.chain_1087	3
scaffold_12	retained_intron	4721793	4722413	-	asmbl_7566,asmbl_7567	none	blat.proc3829893.chain_3003,blat.proc3829893.chain_3004	2	STRG.14636.1,STRG.14636.2	2
scaffold_4	alternate_exon	17577830	17577923	+	asmbl_43401	none	STRG.5347.1	1	STRG.5347.2	1
scaffold_6	ends_in_intron	7620045	7620045	+	asmbl_47018	none	Trinity_GG_4169_c1_g1_i1,blat.proc3829873.chain_3727	2	STRG.7653.1,Trinity_GG_4169_c1_g1_i2,blat.proc3829873.chain_3728	3
scaffold_3	ends_in_intron	13094410	13094410	+	asmbl_40374	none	blat.proc3829873.chain_73	1	STRG.3672.1	1
scaffold_20	skipped_exon	11566328	11568474	+	asmbl_26228	none	STRG.23649.1,blat.proc3829883.chain_793	2	STRG.23649.2,Trinity_GG_13096_c0_g1_i1,blat.proc3829883.chain_791	3
scaffold_9	retained_intron	11794319	11794485	-	asmbl_55267,asmbl_55271	none	STRG.11484.4,blat.proc3829891.chain_3593	2	STRG.11484.1,STRG.11484.5,blat.proc3829891.chain_3590,blat.proc3829891.chain_3592,blat.proc3829891.chain_3594	5
scaffold_1	alt_acceptor	3165520	3165521	+	asmbl_1566	none	STRG.194.2,Trinity_GG_88_c0_g1_i2,blat.proc3829871.chain_153	3	STRG.194.1,STRG.194.3,Trinity_GG_88_c0_g1_i3,blat.proc3829871.chain_152	4
scaffold_17	skipped_exon	14325639	14325908	-	asmbl_19470	none	STRG.20895.2,Trinity_GG_28739_c0_g1_i1,blat.proc3829897.chain_1797	3	STRG.20895.1,blat.proc3829897.chain_1796	2
scaffold_1	spliced_intron	1041790	1043520	+	asmbl_1449	none	STRG.62.2,blat.proc3829871.chain_11	2	STRG.62.1,Trinity_GG_5_c0_g1_i4,Trinity_GG_5_c0_g1_i6,blat.proc3829871.chain_9	4
scaffold_6	retained_intron	14900185	14900520	+	asmbl_47584,asmbl_47586	none	STRG.8258.2,Trinity_GG_4552_c0_g1_i1,Trinity_GG_4552_c0_g1_i4,blat.proc3829875.chain_676,blat.proc3829875.chain_677	5	STRG.8258.3,blat.proc3829875.chain_678	2
scaffold_4	starts_in_intron	16479691	16479691	-	asmbl_41932	none	Trinity_GG_19942_c0_g1_i1	1	STRG.5226.1,STRG.5226.2,STRG.5226.3,blat.proc3829889.chain_1289,blat.proc3829889.chain_1292,blat.proc3829889.chain_1293	6
scaffold_25	alternate_exon	641719	643664	+	asmbl_33336	none	STRG.27098.2	1	STRG.27098.1,Trinity_GG_14970_c1_g1_i1,blat.proc3829885.chain_213	3
scaffold_1	starts_in_intron	4573341	4573341	-	asmbl_213	none	blat.proc3829887.chain_131	1	STRG.277.1,STRG.277.5,blat.proc3829887.chain_133,blat.proc3829887.chain_135,blat.proc3829887.chain_137	5
scaffold_10	alternate_exon	13646078	13646120	-	asmbl_3825	none	blat.proc3829893.chain_1471	1	STRG.12951.1,blat.proc3829893.chain_1470	2
scaffold_13	spliced_intron	3054628	3054794	-	asmbl_9472	none	STRG.15597.2	1	STRG.15597.1,STRG.15597.3,Trinity_GG_25746_c0_g1_i1,blat.proc3829895.chain_334,blat.proc3829895.chain_335	5
scaffold_27	alt_donor	159052	159053	-	asmbl_36601,asmbl_36603	none	STRG.28533.2,STRG.28533.3	2	STRG.28533.1,blat.proc3829901.chain_1699	2
scaffold_14	starts_in_intron	4207175	4207175	+	asmbl_11963	none	Trinity_GG_9339_c0_g1_i1,blat.proc3829879.chain_1698	2	STRG.16960.1	1
scaffold_6	alt_donor	1751446	1751447	-	asmbl_48059,asmbl_48066,asmbl_48067,asmbl_48068,asmbl_48069	none	STRG.7224.1,STRG.7224.3,STRG.7224.6,blat.proc3829889.chain_3170,blat.proc3829889.chain_3174	5	STRG.7224.4,STRG.7224.5,blat.proc3829889.chain_3171	3
scaffold_5	alt_acceptor	18174147	18174148	+	asmbl_44868,asmbl_44869	none	STRG.6948.1,blat.proc3829873.chain_3056	2	STRG.6948.2	1
scaffold_8	spliced_intron	4860984	4861241	-	asmbl_52803,asmbl_52804	none	STRG.9940.1,blat.proc3829891.chain_2117,blat.proc3829891.chain_2118	3	blat.proc3829891.chain_2116	1
scaffold_14	alternate_exon	7584445	7584514	-	asmbl_13216	none	STRG.17194.1	1	STRG.17194.2	1
scaffold_19	starts_in_intron	12356638	12356638	+	asmbl_22600	none	Trinity_GG_12479_c1_g1_i1,blat.proc3829881.chain_3514	2	STRG.22554.2	1
scaffold_3	alt_acceptor	6040381	6040382	-	asmbl_38837	none	STRG.3255.7	1	STRG.3255.1,STRG.3255.2,STRG.3255.5	3
scaffold_26	skipped_exon	9607417	9610401	+	asmbl_35769	none	STRG.28493.3	1	STRG.28493.1,Trinity_GG_15716_c0_g1_i2,blat.proc3829885.chain_1427	3
scaffold_2	retained_intron	18614248	18614705	-	asmbl_23823	none	blat.proc3829887.chain_2514	1	STRG.2737.1,blat.proc3829887.chain_2515	2
scaffold_23	alt_acceptor	4493374	4493375	+	asmbl_30816	none	STRG.25841.1,blat.proc3829883.chain_2709	2	STRG.25841.2	1
scaffold_24	alternate_exon	9121548	9121692	+	asmbl_32520	none	blat.proc3829885.chain_22	1	STRG.26917.1,Trinity_GG_14864_c0_g1_i4,blat.proc3829885.chain_20	3
scaffold_2	retained_intron	15453799	15453902	+	asmbl_25067	none	blat.proc3829871.chain_2683	1	STRG.2500.1,STRG.2500.2,blat.proc3829871.chain_2679,blat.proc3829871.chain_2680,blat.proc3829871.chain_2681,blat.proc3829871.chain_2682,blat.proc3829871.chain_2684,blat.proc3829871.chain_2685	8
scaffold_21	spliced_intron	7502207	7502569	-	asmbl_27850,asmbl_27852	none	STRG.24269.2,blat.proc3829899.chain_1354	2	STRG.24269.1,STRG.24269.3,blat.proc3829899.chain_1355,blat.proc3829899.chain_1356,blat.proc3829899.chain_1357	5
scaffold_11	retained_intron	11996973	11997304	-	asmbl_7035	none	STRG.14111.4,Trinity_GG_24898_c0_g1_i2,blat.proc3829893.chain_2514	3	STRG.14111.1,STRG.14111.2,STRG.14111.3,Trinity_GG_24898_c0_g1_i1,Trinity_GG_24898_c0_g1_i3,Trinity_GG_24898_c0_g1_i4,Trinity_GG_24898_c0_g1_i5,blat.proc3829893.chain_2513,blat.proc3829893.chain_2515,blat.proc3829893.chain_2516	10
scaffold_26	retained_intron	5746449	5746583	+	asmbl_35560	none	Trinity_GG_15616_c0_g1_i2,blat.proc3829885.chain_1267	2	STRG.28253.1,STRG.28253.2,STRG.28253.3,blat.proc3829885.chain_1265,blat.proc3829885.chain_1266	5
scaffold_23	retained_exon	5859322	5859333	+	asmbl_30900	none	blat.proc3829883.chain_2753	1	STRG.25947.2,Trinity_GG_14280_c0_g1_i2,blat.proc3829883.chain_2752	3
scaffold_22	alt_acceptor	2963790	2963791	-	asmbl_29921	none	STRG.24770.1,blat.proc3829899.chain_1875	2	STRG.24770.2	1
scaffold_4	alt_acceptor	14590801	14590802	-	asmbl_41798,asmbl_41800	none	STRG.5078.2,STRG.5078.3,blat.proc3829889.chain_1112	3	STRG.5078.1,blat.proc3829889.chain_1111	2
scaffold_8	retained_intron	11952271	11952696	+	asmbl_52287,asmbl_52288	none	Trinity_GG_5776_c0_g1_i4,blat.proc3829875.chain_2888	2	STRG.10389.1	1
scaffold_20	starts_in_intron	6620274	6620274	+	asmbl_25818	none	STRG.23224.2,Trinity_GG_12780_c1_g1_i1,blat.proc3829883.chain_283	3	STRG.23224.1,blat.proc3829883.chain_281	2
scaffold_24	spliced_intron	10479687	10479716	+	asmbl_32569,asmbl_32570	none	STRG.26999.1,STRG.26999.2	2	STRG.26999.3,blat.proc3829885.chain_115,blat.proc3829885.chain_116	3
scaffold_1	alt_acceptor	9327740	9327741	+	asmbl_1975	none	STRG.632.1	1	STRG.632.2	1
scaffold_18	retained_intron	1621888	1621975	+	asmbl_20394,asmbl_20396	none	blat.proc3829881.chain_1948,blat.proc3829881.chain_1950	2	STRG.21039.1,blat.proc3829881.chain_1949	2
scaffold_10	spliced_intron	8897211	8897475	-	asmbl_3532	none	blat.proc3829893.chain_1125	1	blat.proc3829893.chain_1135	1
scaffold_26	alt_donor	5482951	5482952	+	asmbl_35521,asmbl_35522	none	STRG.28234.1,STRG.28234.3	2	STRG.28234.2,STRG.28234.4	2
scaffold_21	spliced_intron	495998	496253	-	asmbl_27357	none	STRG.23730.1,Trinity_GG_30234_c0_g1_i2,blat.proc3829899.chain_800	3	Trinity_GG_30234_c0_g1_i3,blat.proc3829899.chain_799	2
scaffold_11	retained_exon	6252622	6252705	+	asmbl_5584,asmbl_5586,asmbl_5589	none	STRG.13670.2,Trinity_GG_7547_c0_g1_i2,Trinity_GG_7547_c0_g1_i9,blat.proc3829877.chain_2179,blat.proc3829877.chain_2183	5	STRG.13670.1,blat.proc3829877.chain_2180	2
scaffold_2	alt_acceptor	13995196	13995197	+	asmbl_24897	none	STRG.2394.3	1	STRG.2394.1,STRG.2394.2	2
scaffold_23	alt_donor	6618659	6618660	+	asmbl_30926	none	Trinity_GG_14339_c0_g1_i2,blat.proc3829883.chain_2872	2	STRG.25983.1,blat.proc3829883.chain_2871,blat.proc3829883.chain_2874	3
scaffold_8	ends_in_intron	16514415	16514415	-	asmbl_53417	none	blat.proc3829891.chain_2866	1	STRG.10621.1,STRG.10621.3,STRG.10621.4,STRG.10621.5,blat.proc3829891.chain_2859,blat.proc3829891.chain_2860,blat.proc3829891.chain_2862,blat.proc3829891.chain_2864,blat.proc3829891.chain_2865,blat.proc3829891.chain_2869,blat.proc3829891.chain_2871,blat.proc3829891.chain_2873	12
scaffold_3	starts_in_intron	7290934	7290934	-	asmbl_38911	none	STRG.3325.4	1	STRG.3325.1,STRG.3325.2,STRG.3325.3,blat.proc3829887.chain_3070,blat.proc3829887.chain_3071	5
scaffold_21	retained_intron	5594441	5594553	-	asmbl_27707	none	Trinity_GG_30435_c0_g1_i1,blat.proc3829899.chain_1141	2	STRG.24077.1,blat.proc3829899.chain_1140	2
scaffold_11	alternate_exon	8897108	8897254	-	asmbl_6868	none	blat.proc3829893.chain_2309	1	STRG.13898.1	1
scaffold_16	spliced_intron	6195976	6196108	+	asmbl_17084,asmbl_17085,asmbl_17089,asmbl_17090,asmbl_17091,asmbl_17093	none	STRG.19373.1,STRG.19373.2,blat.proc3829881.chain_125,blat.proc3829881.chain_126,blat.proc3829881.chain_127,blat.proc3829881.chain_128,blat.proc3829881.chain_130,blat.proc3829881.chain_131	8	STRG.19373.3,STRG.19373.4,blat.proc3829881.chain_129	3
scaffold_21	starts_in_intron	3013013	3013013	+	asmbl_28459	none	blat.proc3829883.chain_1071	1	STRG.23914.1,STRG.23914.2,blat.proc3829883.chain_1068,blat.proc3829883.chain_1069,blat.proc3829883.chain_1070	5
scaffold_2	retained_intron	4178724	4178813	+	asmbl_24363	none	blat.proc3829871.chain_1926	1	STRG.1856.1,blat.proc3829871.chain_1927	2
scaffold_573	ends_in_intron	3925	3925	-	asmbl_46551	none	blat.proc3829901.chain_3416	1	STRG.30359.2	1
scaffold_26	ends_in_intron	9029745	9029745	+	asmbl_35721	none	blat.proc3829885.chain_1488	1	STRG.28448.1,blat.proc3829885.chain_1487	2
scaffold_24	retained_intron	5949822	5950116	+	asmbl_32271,asmbl_32274,asmbl_32275,asmbl_32276,asmbl_32278,asmbl_32281	none	blat.proc3829883.chain_3539,blat.proc3829883.chain_3542,blat.proc3829883.chain_3544,blat.proc3829883.chain_3546,blat.proc3829883.chain_3547,blat.proc3829883.chain_3549	6	blat.proc3829883.chain_3548	1
scaffold_10	spliced_intron	13919739	13919961	+	asmbl_4904	none	STRG.12965.1,blat.proc3829877.chain_1531	2	STRG.12965.2	1
scaffold_8	spliced_intron	4287919	4288179	+	asmbl_51814	none	STRG.9898.2	1	STRG.9898.1,Trinity_GG_5516_c0_g2_i1,blat.proc3829875.chain_2399,blat.proc3829875.chain_2400	4
scaffold_2	spliced_intron	9790539	9790880	+	asmbl_24720,asmbl_24722,asmbl_24723,asmbl_24724,asmbl_24725,asmbl_24726	none	STRG.2185.1,blat.proc3829871.chain_2216,blat.proc3829871.chain_2217,blat.proc3829871.chain_2219,blat.proc3829871.chain_2220,blat.proc3829871.chain_2221,blat.proc3829871.chain_2222	7	Trinity_GG_1191_c0_g1_i6,blat.proc3829871.chain_2218	2
scaffold_25	alt_acceptor	3820482	3820483	-	asmbl_34141	none	STRG.27321.2	1	STRG.27321.1,Trinity_GG_32309_c0_g1_i2,Trinity_GG_32309_c0_g1_i3,blat.proc3829901.chain_622,blat.proc3829901.chain_623	5
scaffold_16	spliced_intron	433622	433712	-	asmbl_16044,asmbl_16045,asmbl_16047	none	blat.proc3829897.chain_17,blat.proc3829897.chain_18,blat.proc3829897.chain_20	3	blat.proc3829897.chain_19,blat.proc3829897.chain_23,blat.proc3829897.chain_24,blat.proc3829897.chain_25	4
scaffold_19	retained_exon	13173553	13173662	+	asmbl_22673,asmbl_22675	none	STRG.22628.1,blat.proc3829881.chain_3526,blat.proc3829881.chain_3528	3	Trinity_GG_12483_c0_g1_i3,blat.proc3829881.chain_3527	2
scaffold_8	alt_donor	10041090	10041091	-	asmbl_53089	none	STRG.10251.2,blat.proc3829891.chain_2366	2	STRG.10251.3,blat.proc3829891.chain_2364	2
scaffold_27	spliced_intron	9917345	9917430	+	asmbl_36497	none	blat.proc3829885.chain_2332	1	Trinity_GG_16190_c1_g1_i6,blat.proc3829885.chain_2333	2
scaffold_9	alt_donor	16658428	16658429	-	asmbl_55564,asmbl_55565,asmbl_55568	none	STRG.11803.1,STRG.11803.2,STRG.11803.3,blat.proc3829893.chain_209,blat.proc3829893.chain_213	5	STRG.11803.4,blat.proc3829893.chain_211	2
scaffold_15	retained_intron	15435691	15435799	-	asmbl_15797,asmbl_15799,asmbl_15800,asmbl_15801,asmbl_15802	none	STRG.18920.1,STRG.18920.2,Trinity_GG_27606_c0_g1_i4,blat.proc3829895.chain_3630,blat.proc3829895.chain_3631,blat.proc3829895.chain_3632,blat.proc3829895.chain_3633,blat.proc3829895.chain_3635	8	STRG.18920.3	1
scaffold_11	spliced_intron	15655831	15655930	-	asmbl_7176,asmbl_7177,asmbl_7179,asmbl_7181,asmbl_7182,asmbl_7183	none	STRG.14297.1,STRG.14297.2,blat.proc3829893.chain_2729,blat.proc3829893.chain_2730,blat.proc3829893.chain_2731,blat.proc3829893.chain_2732,blat.proc3829893.chain_2736,blat.proc3829893.chain_2737	8	blat.proc3829893.chain_2733	1
scaffold_14	spliced_intron	15468155	15468287	+	asmbl_12587	none	STRG.17771.2	1	STRG.17771.1,Trinity_GG_9775_c1_g1_i1	2
scaffold_5	retained_intron	9085338	9085435	+	asmbl_44262,asmbl_44263,asmbl_44264,asmbl_44267,asmbl_44271	none	STRG.6237.2,blat.proc3829873.chain_2418,blat.proc3829873.chain_2421,blat.proc3829873.chain_2422,blat.proc3829873.chain_2424	5	STRG.6237.1,STRG.6237.3,blat.proc3829873.chain_2419,blat.proc3829873.chain_2423	4
scaffold_2	alternate_exon	29700	29877	+	asmbl_24077,asmbl_24078,asmbl_24079,asmbl_24082	none	STRG.1493.3,Trinity_GG_850_c0_g1_i1,Trinity_GG_850_c0_g1_i2,blat.proc3829871.chain_1524,blat.proc3829871.chain_1525,blat.proc3829871.chain_1526,blat.proc3829871.chain_1527	7	STRG.1493.1,Trinity_GG_850_c0_g1_i6,blat.proc3829871.chain_1521	3
scaffold_22	starts_in_intron	521238	521238	+	asmbl_29159	none	blat.proc3829883.chain_1722	1	STRG.24686.1,blat.proc3829883.chain_1723,blat.proc3829883.chain_1724	3
scaffold_1	retained_intron	14522266	14522424	-	asmbl_934,asmbl_937	none	Trinity_GG_17569_c0_g1_i1,blat.proc3829887.chain_955,blat.proc3829887.chain_957	3	STRG.1047.1,STRG.1047.2,blat.proc3829887.chain_954,blat.proc3829887.chain_956	4
scaffold_39	starts_in_intron	16069	16069	+	asmbl_41029	none	Trinity_GG_16623_c0_g1_i1,blat.proc3829885.chain_3089	2	STRG.30016.1,blat.proc3829885.chain_3090	2
scaffold_5	retained_intron	9086017	9086102	+	asmbl_44263	none	blat.proc3829873.chain_2421	1	STRG.6237.1,STRG.6237.2,STRG.6237.3,STRG.6237.4,STRG.6237.5,blat.proc3829873.chain_2418,blat.proc3829873.chain_2419,blat.proc3829873.chain_2422,blat.proc3829873.chain_2423,blat.proc3829873.chain_2424,blat.proc3829873.chain_2426	11
scaffold_2	alt_acceptor	15457510	15457511	-	asmbl_23640	none	STRG.2501.1,blat.proc3829887.chain_2316	2	STRG.2501.2	1
scaffold_13	spliced_intron	4803	5031	+	asmbl_10419	none	Trinity_GG_8474_c0_g1_i5,blat.proc3829879.chain_77	2	STRG.15408.1,STRG.15408.3,Trinity_GG_8474_c0_g1_i1,Trinity_GG_8474_c0_g1_i2,Trinity_GG_8474_c0_g1_i6,Trinity_GG_8474_c0_g1_i7,Trinity_GG_8474_c0_g1_i8,blat.proc3829879.chain_71,blat.proc3829879.chain_72,blat.proc3829879.chain_75,blat.proc3829879.chain_76,blat.proc3829879.chain_78	12
scaffold_6	skipped_exon	14116949	14117326	+	asmbl_47517	none	STRG.8168.2	1	STRG.8168.1	1
scaffold_2	alternate_exon	20313282	20313401	+	asmbl_25356	none	STRG.2875.3,blat.proc3829871.chain_3036	2	STRG.2875.1,Trinity_GG_1621_c0_g1_i2,blat.proc3829871.chain_3035	3
scaffold_28	alternate_exon	5633649	5635855	-	asmbl_37637	none	blat.proc3829901.chain_2823	1	STRG.29677.2,STRG.29677.3,STRG.29677.4,Trinity_GG_33665_c0_g1_i3,blat.proc3829901.chain_2827	5
scaffold_10	retained_intron	6074390	6075518	-	asmbl_3340,asmbl_3344,asmbl_3345,asmbl_3346,asmbl_3347	none	STRG.12437.3,blat.proc3829893.chain_918,blat.proc3829893.chain_922,blat.proc3829893.chain_923,blat.proc3829893.chain_924	5	STRG.12437.1,STRG.12437.2,STRG.12437.5,blat.proc3829893.chain_919,blat.proc3829893.chain_921	5
scaffold_1	retained_intron	14426870	14427019	-	asmbl_927	none	Trinity_GG_17571_c0_g1_i3,blat.proc3829887.chain_960	2	STRG.1042.1,STRG.1042.2,STRG.1042.3,blat.proc3829887.chain_961,blat.proc3829887.chain_962,blat.proc3829887.chain_963,blat.proc3829887.chain_964	7
scaffold_5	ends_in_intron	13143729	13143729	-	asmbl_45904	none	blat.proc3829889.chain_2626	1	STRG.6547.1,blat.proc3829889.chain_2625	2
scaffold_15	alt_acceptor	15410225	15410226	+	asmbl_14717,asmbl_14719,asmbl_14726	none	STRG.18921.2,STRG.18921.4,STRG.18921.5,blat.proc3829879.chain_3515,blat.proc3829879.chain_3518	5	STRG.18921.1,STRG.18921.10,STRG.18921.3,STRG.18921.6,STRG.18921.7,STRG.18921.8,STRG.18921.9,blat.proc3829879.chain_3514,blat.proc3829879.chain_3517	9
scaffold_6	spliced_intron	6708324	6709026	-	asmbl_48400	none	STRG.7578.1,blat.proc3829889.chain_3636	2	blat.proc3829889.chain_3635	1
scaffold_16	starts_in_intron	1880913	1880913	+	asmbl_16892,asmbl_16896	none	STRG.19097.3,Trinity_GG_10486_c0_g1_i2,Trinity_GG_10486_c0_g1_i5,blat.proc3829879.chain_3728,blat.proc3829879.chain_3730	5	STRG.19097.1,STRG.19097.2	2
scaffold_9	starts_in_intron	2802193	2802193	+	asmbl_53849	none	blat.proc3829875.chain_3368	1	STRG.10912.1,STRG.10912.2,Trinity_GG_6054_c0_g1_i5,Trinity_GG_6054_c0_g1_i7,blat.proc3829875.chain_3365,blat.proc3829875.chain_3367,blat.proc3829875.chain_3369,blat.proc3829875.chain_3370	8
scaffold_4	retained_intron	4691328	4691558	+	asmbl_42630	none	blat.proc3829873.chain_714	1	STRG.4376.1,blat.proc3829873.chain_716,blat.proc3829873.chain_717,blat.proc3829873.chain_718	4
scaffold_6	retained_intron	17186531	17186619	-	asmbl_49117	none	Trinity_GG_21805_c0_g1_i1,blat.proc3829891.chain_726	2	STRG.8422.1,STRG.8422.2,Trinity_GG_21805_c0_g1_i2,blat.proc3829891.chain_725	4
scaffold_1	retained_intron	11568439	11568517	-	asmbl_646	none	blat.proc3829887.chain_580	1	STRG.766.1,STRG.766.2,blat.proc3829887.chain_577,blat.proc3829887.chain_578,blat.proc3829887.chain_579,blat.proc3829887.chain_581	6
scaffold_13	starts_in_intron	5841198	5841198	-	asmbl_9693	none	blat.proc3829895.chain_570	1	STRG.15879.1,blat.proc3829895.chain_571,blat.proc3829895.chain_572,blat.proc3829895.chain_573	4
scaffold_4	spliced_intron	14648742	14648884	-	asmbl_41808,asmbl_41809,asmbl_41810,asmbl_41813	none	STRG.5094.1,STRG.5094.2,STRG.5094.3,blat.proc3829889.chain_1119,blat.proc3829889.chain_1121,blat.proc3829889.chain_1122	6	blat.proc3829889.chain_1117,blat.proc3829889.chain_1118,blat.proc3829889.chain_1123	3
scaffold_3	alternate_exon	11640135	11640311	+	asmbl_40321	none	STRG.3593.4	1	STRG.3593.1,blat.proc3829873.chain_14,blat.proc3829873.chain_15	3
scaffold_23	starts_in_intron	1664918	1664918	-	asmbl_31384	none	STRG.25621.1,blat.proc3829899.chain_2730	2	STRG.25621.2	1
scaffold_10	alternate_exon	4047327	4049796	+	asmbl_4382	none	STRG.12236.2	1	Trinity_GG_6793_c1_g1_i1,blat.proc3829877.chain_911	2
scaffold_13	ends_in_intron	7451258	7451258	+	asmbl_11037	none	blat.proc3829879.chain_758	1	STRG.16024.1,blat.proc3829879.chain_756,blat.proc3829879.chain_757	3
scaffold_12	ends_in_intron	14104339	14104339	-	asmbl_8109	none	Trinity_GG_25546_c0_g1_i9,blat.proc3829893.chain_3681	2	STRG.15225.1,Trinity_GG_25546_c0_g1_i1,Trinity_GG_25546_c0_g1_i2,Trinity_GG_25546_c0_g1_i5,Trinity_GG_25546_c0_g1_i8,blat.proc3829893.chain_3674,blat.proc3829893.chain_3675,blat.proc3829893.chain_3677,blat.proc3829893.chain_3678,blat.proc3829893.chain_3679,blat.proc3829893.chain_3680,blat.proc3829893.chain_3682	12
scaffold_13	alt_donor	274732	274733	+	asmbl_10435	none	STRG.15416.2,blat.proc3829879.chain_124	2	STRG.15416.3,blat.proc3829879.chain_127	2
scaffold_11	spliced_intron	11641796	11641901	+	asmbl_5946,asmbl_5949,asmbl_5950,asmbl_5952,asmbl_5953	none	STRG.14080.1,blat.proc3829877.chain_2568,blat.proc3829877.chain_2570,blat.proc3829877.chain_2572,blat.proc3829877.chain_2573,blat.proc3829877.chain_2574	6	Trinity_GG_7765_c0_g1_i3,blat.proc3829877.chain_2569	2
scaffold_20	starts_in_intron	8385867	8385867	+	asmbl_25930	none	blat.proc3829883.chain_455	1	STRG.23375.1,blat.proc3829883.chain_454	2
scaffold_1	skipped_exon	10414454	10415687	-	asmbl_593	none	STRG.680.2,blat.proc3829887.chain_608	2	STRG.680.1,STRG.680.3,STRG.680.4,blat.proc3829887.chain_609	4
scaffold_19	alt_donor	625366	625367	-	asmbl_21192	none	STRG.21833.1,blat.proc3829897.chain_2601	2	STRG.21833.2,STRG.21833.3	2
scaffold_10	alternate_exon	11915808	11915901	-	asmbl_3704	none	STRG.12817.1,blat.proc3829893.chain_1285	2	STRG.12817.2	1
scaffold_15	alt_acceptor	4520251	4520252	-	asmbl_15155	none	STRG.18169.1	1	STRG.18169.2	1
scaffold_28	spliced_intron	9225871	9225909	-	asmbl_37827	none	Trinity_GG_33803_c0_g1_i1,blat.proc3829901.chain_3059	2	STRG.29944.1,STRG.29944.2,Trinity_GG_33803_c0_g1_i2,blat.proc3829901.chain_3060	4
scaffold_12	spliced_intron	15425487	15425594	-	asmbl_8217,asmbl_8220	none	STRG.15330.1,blat.proc3829895.chain_68,blat.proc3829895.chain_70	3	blat.proc3829895.chain_69	1
scaffold_23	ends_in_intron	2995925	2995925	-	asmbl_31488	none	Trinity_GG_31418_c0_g1_i1,blat.proc3829899.chain_2867	2	STRG.25729.1,STRG.25729.4,STRG.25729.5,blat.proc3829899.chain_2868,blat.proc3829899.chain_2872	5
scaffold_14	retained_intron	1069987	1070949	+	asmbl_11762	none	Trinity_GG_9205_c0_g1_i3,blat.proc3829879.chain_1437	2	STRG.16754.5	1
scaffold_17	skipped_exon	7849474	7850188	+	asmbl_18056	none	STRG.20399.3	1	STRG.20399.1,blat.proc3829881.chain_1175	2
scaffold_18	alt_donor	3605922	3605923	+	asmbl_20487,asmbl_20489	none	STRG.21167.1,STRG.21167.2,blat.proc3829881.chain_2055	3	STRG.21167.3	1
scaffold_15	spliced_intron	12421730	12421933	+	asmbl_14501,asmbl_14504,asmbl_14505	none	STRG.18687.1,blat.proc3829879.chain_3268,blat.proc3829879.chain_3270,blat.proc3829879.chain_3271	4	blat.proc3829879.chain_3272,blat.proc3829879.chain_3273	2
scaffold_19	retained_intron	2649578	2649708	+	asmbl_22069	none	blat.proc3829881.chain_2917	1	STRG.21940.1,blat.proc3829881.chain_2919	2
scaffold_9	skipped_exon	15221769	15223286	-	asmbl_55475	none	STRG.11719.1,blat.proc3829893.chain_59	2	STRG.11719.2,STRG.11719.3,blat.proc3829893.chain_58	3
scaffold_1	alt_donor	6299552	6299553	-	asmbl_353,asmbl_354	none	STRG.424.1,STRG.424.2,blat.proc3829887.chain_304,blat.proc3829887.chain_306,blat.proc3829887.chain_307	5	STRG.424.4,STRG.424.5	2
scaffold_9	alt_acceptor	15589168	15589169	+	asmbl_54559	none	blat.proc3829877.chain_500	1	STRG.11739.1,blat.proc3829877.chain_496,blat.proc3829877.chain_497	3
scaffold_25	starts_in_intron	5695327	5695327	-	asmbl_34256	none	blat.proc3829901.chain_780	1	STRG.27451.1,blat.proc3829901.chain_776,blat.proc3829901.chain_777	3
scaffold_23	alternate_exon	2991546	2992187	-	asmbl_31490,asmbl_31491,asmbl_31492	none	STRG.25729.1,blat.proc3829899.chain_2864,blat.proc3829899.chain_2872	3	STRG.25729.3	1
scaffold_12	alternate_exon	16315084	16315432	-	asmbl_8256	none	STRG.15369.2,Trinity_GG_25639_c1_g1_i1,blat.proc3829895.chain_115	3	blat.proc3829895.chain_112,blat.proc3829895.chain_113,blat.proc3829895.chain_114	3
scaffold_16	retained_intron	434057	434518	-	asmbl_16044,asmbl_16045,asmbl_16046,asmbl_16050,asmbl_16051	none	blat.proc3829897.chain_17,blat.proc3829897.chain_18,blat.proc3829897.chain_19,blat.proc3829897.chain_23,blat.proc3829897.chain_24	5	STRG.19039.1,blat.proc3829897.chain_20,blat.proc3829897.chain_21	3
scaffold_22	retained_intron	6513438	6513461	+	asmbl_29405	none	STRG.24973.1,Trinity_GG_13814_c0_g1_i2,blat.proc3829883.chain_2029	3	STRG.24973.2	1
scaffold_13	retained_intron	16515276	16515326	+	asmbl_11559	none	STRG.16687.1,Trinity_GG_9186_c0_g1_i1	2	blat.proc3829879.chain_1407	1
scaffold_22	alt_acceptor	4357673	4357674	+	asmbl_29278	none	STRG.24841.2,blat.proc3829883.chain_1877	2	STRG.24841.1,blat.proc3829883.chain_1879,blat.proc3829883.chain_1882	3
scaffold_22	skipped_exon	4239153	4240805	-	asmbl_29979,asmbl_29981	none	STRG.24838.2,Trinity_GG_30899_c1_g1_i5,blat.proc3829899.chain_1982	3	STRG.24838.1,STRG.24838.3,STRG.24838.4,blat.proc3829899.chain_1980,blat.proc3829899.chain_1981,blat.proc3829899.chain_1983	6
scaffold_10	starts_in_intron	3352880	3352880	-	asmbl_3108	none	Trinity_GG_23792_c0_g1_i1,blat.proc3829893.chain_614	2	STRG.12149.1,blat.proc3829893.chain_615	2
scaffold_5	alt_acceptor	6052725	6052726	+	asmbl_44057	none	blat.proc3829873.chain_2193	1	STRG.6016.1,blat.proc3829873.chain_2194	2
scaffold_2	starts_in_intron	17610875	17610875	+	asmbl_25221,asmbl_25223	none	STRG.2650.3,blat.proc3829871.chain_2857	2	STRG.2650.1,STRG.2650.2,blat.proc3829871.chain_2855,blat.proc3829871.chain_2856	4
scaffold_13	retained_intron	15244277	15244789	-	asmbl_10199	none	blat.proc3829895.chain_1213	1	STRG.16557.1,blat.proc3829895.chain_1214,blat.proc3829895.chain_1222	3
scaffold_27	alternate_exon	973582	974473	+	asmbl_35934	none	Trinity_GG_15816_c0_g2_i1,blat.proc3829885.chain_1622	2	Trinity_GG_15816_c0_g1_i2,blat.proc3829885.chain_1619	2
scaffold_17	skipped_exon	14349448	14351180	-	asmbl_19473	none	STRG.20903.1,blat.proc3829897.chain_1803	2	STRG.20903.2,blat.proc3829897.chain_1805	2
scaffold_3	alt_donor	11795519	11795520	-	asmbl_39147	none	STRG.3609.2,Trinity_GG_18990_c0_g1_i1,blat.proc3829887.chain_3384	3	STRG.3609.1,Trinity_GG_18990_c0_g1_i2,blat.proc3829887.chain_3383	3
scaffold_29	ends_in_intron	8994	8994	-	asmbl_38585	none	STRG.29992.3	1	STRG.29992.1,STRG.29992.2,blat.proc3829901.chain_3090	3
scaffold_10	retained_intron	3510475	3510584	+	asmbl_4330	none	STRG.12181.1,blat.proc3829877.chain_826,blat.proc3829877.chain_827,blat.proc3829877.chain_828	4	STRG.12181.3	1
scaffold_16	alt_acceptor	10448353	10448354	+	asmbl_17339	none	STRG.19602.5	1	STRG.19602.2	1
scaffold_5	alt_acceptor	7400806	7400807	+	asmbl_44160	none	STRG.6128.2,blat.proc3829873.chain_2291	2	STRG.6128.1,Trinity_GG_3351_c1_g1_i1,blat.proc3829873.chain_2290	3
scaffold_9	retained_intron	6903754	6903877	-	asmbl_55047,asmbl_55048,asmbl_55051,asmbl_55055,asmbl_55056,asmbl_55057,asmbl_55058	none	STRG.11191.2,STRG.11191.3,STRG.11191.4,STRG.11191.5,blat.proc3829891.chain_3367,blat.proc3829891.chain_3368,blat.proc3829891.chain_3373,blat.proc3829891.chain_3374,blat.proc3829891.chain_3375	9	STRG.11191.1,blat.proc3829891.chain_3366,blat.proc3829891.chain_3369,blat.proc3829891.chain_3370,blat.proc3829891.chain_3371,blat.proc3829891.chain_3372	6
scaffold_4	alt_donor	13763506	13763507	-	asmbl_41748	none	STRG.4997.1,blat.proc3829889.chain_1050	2	blat.proc3829889.chain_1049	1
scaffold_5	retained_intron	10314754	10314836	+	asmbl_44343	none	STRG.6321.2,Trinity_GG_3448_c0_g1_i3,blat.proc3829873.chain_2467	3	STRG.6321.1,blat.proc3829873.chain_2468	2
scaffold_18	retained_intron	2835248	2835573	+	asmbl_20453	none	Trinity_GG_11580_c0_g1_i11,blat.proc3829881.chain_1919	2	blat.proc3829881.chain_1917	1
scaffold_18	spliced_intron	2082391	2082658	+	asmbl_20429,asmbl_20430,asmbl_20432	none	STRG.21100.1,STRG.21100.2,Trinity_GG_11607_c0_g1_i3,blat.proc3829881.chain_1965,blat.proc3829881.chain_1966	5	STRG.21100.3,blat.proc3829881.chain_1964,blat.proc3829881.chain_1967	3
scaffold_14	retained_intron	5790911	5791036	-	asmbl_13076	none	blat.proc3829895.chain_1733	1	STRG.17031.1,Trinity_GG_26569_c1_g2_i1,blat.proc3829895.chain_1731,blat.proc3829895.chain_1734	4
scaffold_4	ends_in_intron	4414536	4414536	+	asmbl_42582	none	blat.proc3829873.chain_684	1	STRG.4344.1,STRG.4344.2,STRG.4344.4,blat.proc3829873.chain_682,blat.proc3829873.chain_683,blat.proc3829873.chain_685,blat.proc3829873.chain_691,blat.proc3829873.chain_697	8
scaffold_7	spliced_intron	4915680	4915757	+	asmbl_50646	none	STRG.8828.3	1	STRG.8828.1,STRG.8828.2,blat.proc3829875.chain_1206	3
scaffold_26	alt_donor	6650872	6650873	-	asmbl_34965	none	STRG.28335.2,blat.proc3829901.chain_1511	2	STRG.28335.1,blat.proc3829901.chain_1512	2
scaffold_20	retained_intron	7858103	7858245	-	asmbl_26857,asmbl_26859	none	STRG.23322.4,blat.proc3829899.chain_377	2	STRG.23322.1,STRG.23322.2,STRG.23322.3,blat.proc3829899.chain_376,blat.proc3829899.chain_378	5
scaffold_4	retained_intron	17115130	17115304	+	asmbl_43377	none	Trinity_GG_2943_c0_g1_i5	1	STRG.5308.4	1
scaffold_22	spliced_intron	9340091	9340165	-	asmbl_30303	none	STRG.25263.2	1	STRG.25263.1,blat.proc3829899.chain_2276	2
scaffold_16	starts_in_intron	10085618	10085618	+	asmbl_17314	none	Trinity_GG_10741_c0_g1_i3,blat.proc3829881.chain_476	2	Trinity_GG_10741_c0_g1_i4,blat.proc3829881.chain_475	2
scaffold_23	spliced_intron	6856586	6856771	-	asmbl_31702,asmbl_31703,asmbl_31704	none	STRG.26000.1,STRG.26000.2,STRG.26000.3,blat.proc3829899.chain_3088	4	blat.proc3829899.chain_3087	1
scaffold_1	skipped_exon	11618948	11621286	-	asmbl_653	none	STRG.768.2,blat.proc3829887.chain_659	2	STRG.768.1,blat.proc3829887.chain_658	2
scaffold_10	retained_intron	8897598	8897769	-	asmbl_3537,asmbl_3541	none	blat.proc3829893.chain_1127,blat.proc3829893.chain_1134	2	STRG.12629.1,blat.proc3829893.chain_1125,blat.proc3829893.chain_1129,blat.proc3829893.chain_1130,blat.proc3829893.chain_1131,blat.proc3829893.chain_1132,blat.proc3829893.chain_1133,blat.proc3829893.chain_1136	8
scaffold_26	alternate_exon	435480	435573	+	asmbl_35215	none	blat.proc3829885.chain_869	1	blat.proc3829885.chain_868	1
scaffold_6	skipped_exon	18172535	18174830	-	asmbl_49164	none	STRG.8488.1,blat.proc3829891.chain_800	2	blat.proc3829891.chain_801	1
scaffold_26	alt_donor	5404193	5404194	+	asmbl_35512	none	blat.proc3829885.chain_1236	1	STRG.28230.1	1
scaffold_8	starts_in_intron	3344538	3344538	+	asmbl_51749	none	Trinity_GG_5469_c0_g1_i3	1	STRG.9829.2,blat.proc3829875.chain_2318	2
scaffold_5	spliced_intron	4948779	4949120	+	asmbl_43984	none	Trinity_GG_3271_c0_g1_i1,blat.proc3829873.chain_2130	2	STRG.5946.1,STRG.5946.2	2
scaffold_11	retained_exon	8079171	8079240	-	asmbl_6807	none	Trinity_GG_24711_c0_g1_i4,blat.proc3829893.chain_2202	2	STRG.13802.4,STRG.13802.5,Trinity_GG_24711_c0_g1_i13,Trinity_GG_24711_c0_g1_i17,Trinity_GG_24711_c0_g1_i18,blat.proc3829893.chain_2197,blat.proc3829893.chain_2204,blat.proc3829893.chain_2206,blat.proc3829893.chain_2208	9
scaffold_23	retained_intron	4312110	4313057	+	asmbl_30803	none	blat.proc3829883.chain_2711	1	blat.proc3829883.chain_2714	1
scaffold_7	alt_acceptor	17810382	17810383	+	asmbl_51381,asmbl_51385,asmbl_51386,asmbl_51388	none	STRG.9616.1,blat.proc3829875.chain_2097,blat.proc3829875.chain_2102,blat.proc3829875.chain_2104,blat.proc3829875.chain_2105	5	blat.proc3829875.chain_2098,blat.proc3829875.chain_2099,blat.proc3829875.chain_2100	3
scaffold_5	retained_intron	14732517	14732623	-	asmbl_45996,asmbl_45997	none	Trinity_GG_20753_c0_g1_i2,blat.proc3829889.chain_2715,blat.proc3829889.chain_2716	3	STRG.6667.1,blat.proc3829889.chain_2713	2
scaffold_10	starts_in_intron	6054491	6054491	+	asmbl_4503,asmbl_4510	none	STRG.12431.5,blat.proc3829877.chain_1070	2	STRG.12431.1,STRG.12431.2,STRG.12431.3,STRG.12431.4,blat.proc3829877.chain_1065,blat.proc3829877.chain_1066,blat.proc3829877.chain_1067,blat.proc3829877.chain_1068,blat.proc3829877.chain_1071,blat.proc3829877.chain_1072,blat.proc3829877.chain_1073	11
scaffold_2	spliced_intron	14276152	14276257	+	asmbl_24926,asmbl_24933	none	STRG.2425.1,blat.proc3829871.chain_2544,blat.proc3829871.chain_2547	3	STRG.2425.3,blat.proc3829871.chain_2541,blat.proc3829871.chain_2542,blat.proc3829871.chain_2543	4
scaffold_15	retained_intron	4231931	4232179	+	asmbl_14073,asmbl_14075	none	blat.proc3829879.chain_2809,blat.proc3829879.chain_2813	2	STRG.18160.1,STRG.18160.2,blat.proc3829879.chain_2806,blat.proc3829879.chain_2808,blat.proc3829879.chain_2810,blat.proc3829879.chain_2811,blat.proc3829879.chain_2814	7
scaffold_5	alt_acceptor	6733178	6733179	+	asmbl_44112	none	STRG.6071.3	1	STRG.6071.1,STRG.6071.2,blat.proc3829873.chain_2241,blat.proc3829873.chain_2242	4
scaffold_14	spliced_intron	405059	405204	+	asmbl_11720,asmbl_11721,asmbl_11722,asmbl_11723	none	STRG.16722.1,STRG.16722.3,STRG.16722.4,Trinity_GG_9219_c0_g1_i21,Trinity_GG_9219_c0_g1_i3,Trinity_GG_9219_c0_g1_i6,blat.proc3829879.chain_1465,blat.proc3829879.chain_1468,blat.proc3829879.chain_1474	9	STRG.16722.7,Trinity_GG_9219_c0_g1_i17,blat.proc3829879.chain_1472	3
scaffold_15	skipped_exon	12123673	12125251	+	asmbl_14483	none	STRG.18678.2	1	STRG.18678.1,blat.proc3829879.chain_3256	2
scaffold_4	ends_in_intron	10447379	10447379	-	asmbl_41596	none	blat.proc3829889.chain_838	1	STRG.4795.1,STRG.4795.2,STRG.4795.3,blat.proc3829889.chain_832,blat.proc3829889.chain_834,blat.proc3829889.chain_835,blat.proc3829889.chain_837,blat.proc3829889.chain_839	8
scaffold_14	skipped_exon	8695572	8696048	-	asmbl_13319,asmbl_13322	none	STRG.17289.2,blat.proc3829895.chain_2017	2	STRG.17289.1,blat.proc3829895.chain_2016,blat.proc3829895.chain_2019	3
scaffold_21	spliced_intron	705967	706986	-	asmbl_27380	none	Trinity_GG_30242_c0_g1_i8,blat.proc3829899.chain_813	2	STRG.23751.2,Trinity_GG_30242_c0_g2_i1,blat.proc3829899.chain_814,blat.proc3829899.chain_818	4
scaffold_28	alt_acceptor	296270	296271	+	asmbl_37964	none	STRG.29243.2	1	STRG.29243.1,STRG.29243.3,blat.proc3829885.chain_2398,blat.proc3829885.chain_2399,blat.proc3829885.chain_2400,blat.proc3829885.chain_2401	6
scaffold_18	starts_in_intron	7661698	7661698	+	asmbl_20797	none	Trinity_GG_11871_c0_g1_i4	1	STRG.21461.1,STRG.21461.2,STRG.21461.3,STRG.21461.4	4
scaffold_25	alternate_exon	638059	638159	-	asmbl_33986	none	STRG.27095.2,blat.proc3829901.chain_338	2	STRG.27095.1,blat.proc3829901.chain_337	2
scaffold_12	spliced_intron	9002159	9002285	-	asmbl_7764	none	blat.proc3829893.chain_3268	1	blat.proc3829893.chain_3267	1
scaffold_23	alt_acceptor	5578434	5578435	+	asmbl_30875,asmbl_30879	none	STRG.25909.1,blat.proc3829883.chain_2801,blat.proc3829883.chain_2803	3	STRG.25909.2,STRG.25909.3,blat.proc3829883.chain_2798,blat.proc3829883.chain_2799,blat.proc3829883.chain_2802	5
scaffold_23	alt_donor	1860674	1860675	+	asmbl_30668	none	Trinity_GG_14162_c0_g1_i1,blat.proc3829883.chain_2545	2	STRG.25647.1,Trinity_GG_14162_c0_g1_i2,blat.proc3829883.chain_2546	3
scaffold_7	starts_in_intron	13864434	13864434	-	asmbl_50142	none	STRG.9469.3	1	STRG.9469.1,STRG.9469.2,blat.proc3829891.chain_1673,blat.proc3829891.chain_1674,blat.proc3829891.chain_1675,blat.proc3829891.chain_1676,blat.proc3829891.chain_1677	7
scaffold_23	alt_acceptor	7687380	7687381	+	asmbl_31008,asmbl_31010,asmbl_31015	none	STRG.26063.1,STRG.26063.6,Trinity_GG_14406_c0_g1_i3,Trinity_GG_14406_c0_g1_i6,blat.proc3829883.chain_2977,blat.proc3829883.chain_2981	6	STRG.26063.3,Trinity_GG_14406_c0_g1_i1,blat.proc3829883.chain_2979	3
scaffold_4	retained_intron	19539846	19539879	-	asmbl_42200	none	STRG.5538.2,Trinity_GG_20121_c0_g1_i2,blat.proc3829889.chain_1602	3	STRG.5538.3	1
scaffold_21	alternate_exon	5774666	5775179	-	asmbl_27722	none	blat.proc3829899.chain_1202	1	STRG.24099.3	1
scaffold_8	ends_in_intron	6161595	6161595	-	asmbl_52855	none	Trinity_GG_22628_c3_g1_i1,blat.proc3829891.chain_2221	2	STRG.10012.1,STRG.10012.3,Trinity_GG_22628_c0_g1_i1,blat.proc3829891.chain_2213,blat.proc3829891.chain_2214,blat.proc3829891.chain_2215,blat.proc3829891.chain_2217,blat.proc3829891.chain_2218	8
scaffold_20	ends_in_intron	6652518	6652518	-	asmbl_26762,asmbl_26763,asmbl_26764	none	STRG.23227.2,blat.proc3829899.chain_280	2	STRG.23227.1,blat.proc3829899.chain_279	2
scaffold_15	alternate_exon	12029899	12030066	+	asmbl_14459	none	Trinity_GG_10227_c0_g1_i1,blat.proc3829879.chain_3227	2	STRG.18636.3,Trinity_GG_10227_c0_g1_i4,blat.proc3829879.chain_3225	3
scaffold_13	alternate_exon	388179	388467	-	asmbl_9297	none	STRG.15422.1,blat.proc3829895.chain_130	2	Trinity_GG_25648_c0_g1_i8,blat.proc3829895.chain_129	2
scaffold_24	alt_acceptor	7737497	7737498	-	asmbl_33046	none	STRG.26804.1,Trinity_GG_32004_c0_g1_i1,blat.proc3829901.chain_107	3	Trinity_GG_32004_c0_g1_i2,blat.proc3829901.chain_108	2
scaffold_18	retained_intron	5584921	5585267	-	asmbl_19901,asmbl_19904	none	Trinity_GG_28951_c1_g1_i4,blat.proc3829897.chain_2182,blat.proc3829897.chain_2193,blat.proc3829897.chain_2195	4	STRG.21304.1,STRG.21304.2,blat.proc3829897.chain_2194	3
scaffold_17	spliced_intron	4267993	4268192	+	asmbl_17904	none	STRG.20166.1,blat.proc3829881.chain_1023	2	Trinity_GG_11076_c0_g1_i1,blat.proc3829881.chain_1022	2
scaffold_4	spliced_intron	13076283	13076428	+	asmbl_43109,asmbl_43114	none	STRG.4945.1,STRG.4945.2,blat.proc3829873.chain_1237	3	blat.proc3829873.chain_1239	1
scaffold_20	spliced_intron	12095031	12095381	-	asmbl_27146	none	STRG.23692.2,blat.proc3829899.chain_686	2	STRG.23692.1,blat.proc3829899.chain_687	2
scaffold_8	starts_in_intron	9949634	9949634	-	asmbl_53081	none	blat.proc3829891.chain_2342	1	STRG.10243.1,blat.proc3829891.chain_2341	2
scaffold_4	retained_intron	13434608	13434816	-	asmbl_41743	none	blat.proc3829889.chain_988	1	STRG.4981.1,blat.proc3829889.chain_989	2
scaffold_20	skipped_exon	2763173	2765410	-	asmbl_26598	none	STRG.23004.6	1	STRG.23004.5	1
scaffold_8	alt_acceptor	8901322	8901323	-	asmbl_52974	none	STRG.10137.1,blat.proc3829891.chain_2317	2	STRG.10137.3	1
scaffold_5	retained_intron	12660558	12661236	+	asmbl_44483,asmbl_44486,asmbl_44487	none	blat.proc3829873.chain_2575,blat.proc3829873.chain_2576,blat.proc3829873.chain_2579,blat.proc3829873.chain_2580	4	STRG.6495.1,STRG.6495.2,blat.proc3829873.chain_2574,blat.proc3829873.chain_2578	4
scaffold_14	spliced_intron	15831084	15831226	-	asmbl_13739	none	STRG.17811.2	1	blat.proc3829895.chain_2466	1
scaffold_6	retained_intron	13575827	13577850	-	asmbl_48851	none	STRG.8093.2	1	STRG.8093.3	1
scaffold_17	skipped_exon	9032238	9033472	-	asmbl_19190,asmbl_19192	none	STRG.20520.4,STRG.20520.6	2	STRG.20520.1,STRG.20520.3,STRG.20520.5	3
scaffold_26	spliced_intron	4136117	4136364	-	asmbl_34805,asmbl_34806,asmbl_34808	none	STRG.28100.1,STRG.28100.2,STRG.28100.3,blat.proc3829901.chain_1326	4	STRG.28100.4,blat.proc3829901.chain_1324,blat.proc3829901.chain_1325	3
scaffold_3	alternate_exon	14491459	14497863	-	asmbl_39326	none	STRG.3788.1,Trinity_GG_19109_c0_g2_i1,blat.proc3829887.chain_3592	3	Trinity_GG_19109_c1_g1_i2,blat.proc3829887.chain_3593	2
scaffold_9	starts_in_intron	2801859	2801859	+	asmbl_53847	none	Trinity_GG_6054_c0_g1_i5,blat.proc3829875.chain_3370	2	STRG.10912.1,STRG.10912.2,Trinity_GG_6054_c0_g1_i7,blat.proc3829875.chain_3365,blat.proc3829875.chain_3367,blat.proc3829875.chain_3369	6
scaffold_1	spliced_intron	22324113	22324192	-	asmbl_1233	none	STRG.1484.1,Trinity_GG_17820_c0_g1_i2,blat.proc3829887.chain_1347	3	Trinity_GG_17820_c0_g1_i1,blat.proc3829887.chain_1346	2
scaffold_4	starts_in_intron	14108416	14108416	+	asmbl_43183	none	Trinity_GG_2801_c0_g1_i3,blat.proc3829873.chain_1346	2	STRG.5033.1,STRG.5033.2,STRG.5033.3,blat.proc3829873.chain_1348,blat.proc3829873.chain_1349	5
scaffold_5	retained_intron	6847775	6848001	+	asmbl_44115	none	blat.proc3829873.chain_2199	1	STRG.6086.1,blat.proc3829873.chain_2198	2
scaffold_2	alt_donor	13072485	13072486	-	asmbl_23504,asmbl_23510	none	STRG.2340.2,blat.proc3829887.chain_2255,blat.proc3829887.chain_2260	3	STRG.2340.1,STRG.2340.3,blat.proc3829887.chain_2256,blat.proc3829887.chain_2257,blat.proc3829887.chain_2258,blat.proc3829887.chain_2259,blat.proc3829887.chain_2262	7
scaffold_16	alt_acceptor	5962492	5962493	+	asmbl_17041	none	STRG.19319.2,blat.proc3829881.chain_165	2	STRG.19319.1,STRG.19319.3,blat.proc3829881.chain_166	3
scaffold_5	skipped_exon	8670847	8673324	+	asmbl_44223	none	STRG.6198.1,blat.proc3829873.chain_2281	2	STRG.6198.2,blat.proc3829873.chain_2283	2
scaffold_3	starts_in_intron	2205591	2205591	-	asmbl_38694	none	blat.proc3829887.chain_2822	1	STRG.3027.1,STRG.3027.2,blat.proc3829887.chain_2818,blat.proc3829887.chain_2819,blat.proc3829887.chain_2821	5
scaffold_13	spliced_intron	8237557	8237860	-	asmbl_9918,asmbl_9921	none	STRG.16101.1,blat.proc3829895.chain_898,blat.proc3829895.chain_901	3	blat.proc3829895.chain_899	1
scaffold_20	ends_in_intron	11567019	11567019	+	asmbl_26227	none	blat.proc3829883.chain_795	1	STRG.23649.1,STRG.23649.2,blat.proc3829883.chain_792,blat.proc3829883.chain_793	4
scaffold_20	starts_in_intron	245840	245840	-	asmbl_26409	none	blat.proc3829897.chain_3501	1	STRG.22696.1	1
scaffold_9	ends_in_intron	18414533	18414533	-	asmbl_55672	none	STRG.11877.2,Trinity_GG_23591_c0_g1_i2,blat.proc3829893.chain_269	3	STRG.11877.1,blat.proc3829893.chain_270	2
scaffold_16	retained_exon	2337297	2337340	-	asmbl_16133	none	STRG.19119.1,Trinity_GG_27736_c0_g1_i1,blat.proc3829897.chain_140	3	STRG.19119.2	1
scaffold_12	alt_acceptor	14131990	14131991	+	asmbl_9019,asmbl_9021	none	STRG.15226.1,STRG.15226.3,blat.proc3829877.chain_3679	3	STRG.15226.2	1
scaffold_7	starts_in_intron	3745796	3745796	-	asmbl_49625	none	STRG.8760.1,blat.proc3829891.chain_1130	2	STRG.8760.2,blat.proc3829891.chain_1131	2
scaffold_1	starts_in_intron	9299187	9299187	-	asmbl_540	none	Trinity_GG_17319_c0_g1_i3,blat.proc3829887.chain_469	2	STRG.627.1,Trinity_GG_17319_c0_g1_i2	2
scaffold_3	starts_in_intron	2873324	2873324	+	asmbl_39880	none	Trinity_GG_1713_c0_g1_i2,blat.proc3829871.chain_3200	2	STRG.3044.1,blat.proc3829871.chain_3197	2
scaffold_6	retained_intron	10393410	10393501	+	asmbl_47220	none	Trinity_GG_4318_c0_g1_i1,blat.proc3829875.chain_255	2	STRG.7876.1,blat.proc3829875.chain_254	2
scaffold_16	retained_intron	5445512	5445763	-	asmbl_16278	none	STRG.19289.1,blat.proc3829897.chain_326	2	STRG.19289.2,Trinity_GG_27846_c0_g1_i1,blat.proc3829897.chain_327	3
scaffold_28	spliced_intron	5014676	5014754	+	asmbl_38250,asmbl_38252,asmbl_38257	none	STRG.29628.1,STRG.29628.2,Trinity_GG_16433_c0_g2_i3,blat.proc3829885.chain_2754,blat.proc3829885.chain_2757	5	Trinity_GG_16433_c0_g2_i1,blat.proc3829885.chain_2756	2
scaffold_11	ends_in_intron	14503741	14503741	+	asmbl_6059	none	STRG.14232.1,blat.proc3829877.chain_2608	2	STRG.14232.2	1
scaffold_1	spliced_intron	11800832	11801098	-	asmbl_680	none	blat.proc3829887.chain_691	1	STRG.794.3	1
scaffold_9	alt_acceptor	2487146	2487147	+	asmbl_53820	none	STRG.10882.2	1	STRG.10882.1,blat.proc3829875.chain_3343	2
scaffold_8	starts_in_intron	18423676	18423676	+	asmbl_52543	none	STRG.10731.2	1	STRG.10731.1	1
scaffold_21	alternate_exon	9866823	9867235	-	asmbl_27998	none	STRG.24438.3	1	STRG.24438.2	1
scaffold_10	alt_acceptor	2766120	2766121	+	asmbl_4288	none	STRG.12087.1,blat.proc3829877.chain_796	2	STRG.12087.2,blat.proc3829877.chain_797	2
scaffold_20	alt_acceptor	1489815	1489816	+	asmbl_25572	none	STRG.22855.3	1	STRG.22855.2,STRG.22855.5	2
scaffold_15	starts_in_intron	15916443	15916443	+	asmbl_14796	none	Trinity_GG_10379_c1_g1_i2,blat.proc3829879.chain_3527	2	STRG.18967.1,STRG.18967.2	2
scaffold_3	alternate_exon	7714418	7714552	-	asmbl_38932	none	blat.proc3829887.chain_3174	1	STRG.3361.2,Trinity_GG_18844_c3_g1_i1	2
scaffold_21	alternate_exon	386087	386181	-	asmbl_27329	none	STRG.23716.1,Trinity_GG_30220_c0_g1_i1,blat.proc3829899.chain_747	3	STRG.23716.2	1
scaffold_9	ends_in_intron	2400243	2400243	-	asmbl_54835	none	blat.proc3829891.chain_3016	1	STRG.10875.1,STRG.10875.2	2
scaffold_21	retained_intron	5537163	5537307	-	asmbl_27698,asmbl_27699,asmbl_27700,asmbl_27701,asmbl_27702,asmbl_27703	none	STRG.24073.2,Trinity_GG_30443_c0_g1_i6,blat.proc3829899.chain_1163,blat.proc3829899.chain_1165,blat.proc3829899.chain_1166,blat.proc3829899.chain_1167,blat.proc3829899.chain_1168	7	STRG.24073.1,STRG.24073.3	2
scaffold_9	alt_donor	17611451	17611452	-	asmbl_55624,asmbl_55625	none	STRG.11843.4,blat.proc3829893.chain_185	2	STRG.11843.1,STRG.11843.2,STRG.11843.3,blat.proc3829893.chain_183	4
scaffold_5	alt_donor	4856791	4856792	-	asmbl_45404,asmbl_45406,asmbl_45407	none	STRG.5937.1,blat.proc3829889.chain_2016,blat.proc3829889.chain_2018	3	STRG.5937.2,blat.proc3829889.chain_2019	2
scaffold_11	retained_intron	11069659	11070082	-	asmbl_6995	none	blat.proc3829893.chain_2448	1	STRG.14060.1,blat.proc3829893.chain_2449	2
scaffold_28	alternate_exon	1565300	1565419	+	asmbl_38001	none	STRG.29320.1,Trinity_GG_16256_c0_g1_i1	2	STRG.29320.2	1
scaffold_12	starts_in_intron	147251	147251	+	asmbl_8406	none	Trinity_GG_7955_c0_g1_i2,blat.proc3829877.chain_2911	2	STRG.14411.1,Trinity_GG_7955_c0_g1_i1,blat.proc3829877.chain_2910	3
scaffold_20	retained_exon	6468274	6468350	-	asmbl_26756	none	STRG.23219.1,blat.proc3829899.chain_260	2	STRG.23219.2	1
scaffold_15	ends_in_intron	4094900	4094900	+	asmbl_14063	none	Trinity_GG_9959_c0_g2_i3,blat.proc3829879.chain_2784	2	STRG.18140.1,STRG.18140.2,blat.proc3829879.chain_2785,blat.proc3829879.chain_2787	4
scaffold_2	alt_donor	2300474	2300475	-	asmbl_22910	none	STRG.1667.3,blat.proc3829887.chain_1487	2	blat.proc3829887.chain_1489	1
scaffold_10	spliced_intron	13544278	13544650	-	asmbl_3806,asmbl_3809	none	STRG.12942.1,blat.proc3829893.chain_1385,blat.proc3829893.chain_1386	3	Trinity_GG_24229_c0_g1_i3,Trinity_GG_24229_c0_g2_i1,blat.proc3829893.chain_1384,blat.proc3829893.chain_1387	4
scaffold_7	alt_acceptor	1236295	1236296	+	asmbl_50472,asmbl_50477	none	STRG.8627.7,Trinity_GG_4740_c0_g1_i20,Trinity_GG_4740_c1_g1_i1,blat.proc3829875.chain_1050	4	STRG.8627.3,STRG.8627.8,STRG.8627.9,Trinity_GG_4740_c0_g1_i10,blat.proc3829875.chain_1053	5
scaffold_16	alt_acceptor	290374	290375	+	asmbl_16804,asmbl_16805,asmbl_16807	none	STRG.19012.1,blat.proc3829879.chain_3638,blat.proc3829879.chain_3639	3	STRG.19012.2	1
scaffold_9	alt_donor	15387630	15387631	+	asmbl_54539,asmbl_54541	none	blat.proc3829877.chain_489,blat.proc3829877.chain_493	2	STRG.11728.1,STRG.11728.2,blat.proc3829877.chain_488,blat.proc3829877.chain_490,blat.proc3829877.chain_491,blat.proc3829877.chain_492	6
scaffold_9	ends_in_intron	9870462	9870462	-	asmbl_55207	none	STRG.11345.4,Trinity_GG_23302_c2_g1_i1,blat.proc3829891.chain_3524	3	Trinity_GG_23302_c0_g1_i1,blat.proc3829891.chain_3519	2
scaffold_8	skipped_exon	9866167	9867156	+	asmbl_52105,asmbl_52109	none	blat.proc3829875.chain_2692,blat.proc3829875.chain_2697	2	STRG.10225.2,STRG.10225.4,blat.proc3829875.chain_2691,blat.proc3829875.chain_2693,blat.proc3829875.chain_2694,blat.proc3829875.chain_2695	6
scaffold_13	starts_in_intron	3337488	3337488	+	asmbl_10665	none	blat.proc3829879.chain_283	1	STRG.15632.1,STRG.15632.2,blat.proc3829879.chain_284	3
scaffold_1	retained_intron	854652	854820	+	asmbl_1420,asmbl_1423,asmbl_1424	none	STRG.42.2,STRG.42.4,STRG.42.6,Trinity_GG_38_c0_g1_i9,blat.proc3829871.chain_70	5	STRG.42.1,STRG.42.3,STRG.42.5	3
scaffold_1	ends_in_intron	1237449	1237449	+	asmbl_1462	none	blat.proc3829871.chain_100	1	STRG.66.1,blat.proc3829871.chain_101	2
scaffold_28	ends_in_intron	2908095	2908095	-	asmbl_37426	none	Trinity_GG_33484_c0_g1_i2	1	STRG.29464.1,STRG.29464.2	2
scaffold_25	alt_donor	4441939	4441940	+	asmbl_33493	none	STRG.27356.3,Trinity_GG_15095_c0_g1_i1,blat.proc3829885.chain_405	3	STRG.27356.4,Trinity_GG_15095_c0_g1_i2,blat.proc3829885.chain_403	3
scaffold_23	ends_in_intron	7294351	7294351	+	asmbl_30982	none	blat.proc3829883.chain_2879	1	STRG.26029.1,blat.proc3829883.chain_2878	2
scaffold_3	skipped_exon	14807270	14807933	-	asmbl_39377	none	STRG.3821.1,blat.proc3829887.chain_3571	2	blat.proc3829887.chain_3572	1
scaffold_6	retained_exon	7515852	7515923	-	asmbl_48437	none	blat.proc3829889.chain_3683	1	STRG.7647.1,STRG.7647.2,blat.proc3829889.chain_3680,blat.proc3829889.chain_3681,blat.proc3829889.chain_3684	5
scaffold_16	spliced_intron	318642	318842	+	asmbl_16813	none	STRG.19010.2,blat.proc3829879.chain_3632	2	blat.proc3829879.chain_3633	1
scaffold_13	alt_donor	12244104	12244105	+	asmbl_11327	none	STRG.16345.2	1	STRG.16345.1,STRG.16345.3	2
scaffold_11	spliced_intron	4759832	4760026	-	asmbl_6605,asmbl_6606,asmbl_6608	none	STRG.13565.1,blat.proc3829893.chain_2020,blat.proc3829893.chain_2021,blat.proc3829893.chain_2023	4	blat.proc3829893.chain_2022	1
scaffold_6	alternate_exon	10746664	10749989	+	asmbl_47229	none	STRG.7886.1,blat.proc3829875.chain_281	2	blat.proc3829875.chain_279	1
scaffold_6	alternate_exon	16605135	16606264	+	asmbl_47644	none	STRG.8378.2,blat.proc3829875.chain_759	2	STRG.8378.1	1
scaffold_2	alternate_exon	5073747	5073861	-	asmbl_23152	none	STRG.1922.4	1	STRG.1922.3	1
scaffold_10	alternate_exon	3315709	3315737	-	asmbl_3101	none	STRG.12155.2	1	STRG.12155.1,Trinity_GG_23799_c2_g1_i1,blat.proc3829893.chain_624	3
scaffold_23	spliced_intron	5851943	5852135	+	asmbl_30896	none	STRG.25936.2,Trinity_GG_14305_c1_g1_i2,blat.proc3829883.chain_2807	3	STRG.25936.1,Trinity_GG_14305_c1_g1_i1,blat.proc3829883.chain_2806	3
scaffold_12	starts_in_intron	16376291	16376291	+	asmbl_9130	none	Trinity_GG_8418_c0_g1_i3,blat.proc3829877.chain_3731	2	STRG.15377.1,blat.proc3829877.chain_3730	2
scaffold_5	retained_exon	17026978	17027051	+	asmbl_44791	none	STRG.6870.2,Trinity_GG_3742_c0_g1_i2,blat.proc3829873.chain_2966	3	STRG.6870.1	1
scaffold_13	alternate_exon	6138006	6138020	-	asmbl_9735	none	STRG.15904.1,Trinity_GG_25956_c0_g1_i3,blat.proc3829895.chain_671	3	STRG.15904.2	1
scaffold_6	spliced_intron	73979	74164	-	asmbl_47963	none	STRG.7058.4	1	STRG.7058.1,STRG.7058.2,STRG.7058.3	3
scaffold_6	spliced_intron	8581614	8581696	+	asmbl_47088,asmbl_47091	none	STRG.7732.3,STRG.7732.4	2	STRG.7732.2,blat.proc3829875.chain_110	2
scaffold_22	starts_in_intron	508746	508746	-	asmbl_29851,asmbl_29861	none	Trinity_GG_30818_c0_g1_i15,Trinity_GG_30818_c0_g1_i3,blat.proc3829899.chain_1832,blat.proc3829899.chain_1833	4	STRG.24685.2,STRG.24685.3,STRG.24685.4,STRG.24685.5,Trinity_GG_30818_c0_g1_i13,Trinity_GG_30818_c0_g1_i17,Trinity_GG_30818_c0_g1_i19,Trinity_GG_30818_c0_g1_i8,blat.proc3829899.chain_1823,blat.proc3829899.chain_1824,blat.proc3829899.chain_1825,blat.proc3829899.chain_1827,blat.proc3829899.chain_1830,blat.proc3829899.chain_1831,blat.proc3829899.chain_1836	15
scaffold_18	retained_exon	3918127	3918211	-	asmbl_19823	none	STRG.21192.3	1	STRG.21192.5	1
scaffold_4	alternate_exon	7026187	7026423	+	asmbl_42778	none	STRG.4535.2,blat.proc3829873.chain_898	2	STRG.4535.1,blat.proc3829873.chain_897	2
scaffold_15	retained_intron	4497290	4497450	+	asmbl_14093	none	blat.proc3829879.chain_2736	1	STRG.18164.1,blat.proc3829879.chain_2738	2
scaffold_12	alt_acceptor	3106229	3106230	+	asmbl_8505	none	STRG.14538.2	1	STRG.14538.1	1
scaffold_20	retained_exon	5916295	5916378	-	asmbl_26705	none	STRG.23183.1,blat.proc3829899.chain_129	2	STRG.23183.2	1
scaffold_6	retained_exon	13190029	13190125	+	asmbl_47420,asmbl_47421,asmbl_47422	none	STRG.8068.1,STRG.8068.2,blat.proc3829875.chain_427,blat.proc3829875.chain_428,blat.proc3829875.chain_430	5	STRG.8068.3,blat.proc3829875.chain_432	2
scaffold_21	retained_intron	7914216	7914320	-	asmbl_27884	none	STRG.24311.2,blat.proc3829899.chain_1284	2	STRG.24311.3	1
scaffold_26	alt_acceptor	3561045	3561046	+	asmbl_35321,asmbl_35322,asmbl_35323	none	STRG.28018.1,STRG.28018.3,STRG.28018.4,blat.proc3829885.chain_1001,blat.proc3829885.chain_1005	5	STRG.28018.2	1
scaffold_1	retained_exon	5963990	5964225	+	asmbl_1795,asmbl_1797	none	STRG.396.1,STRG.396.2,blat.proc3829871.chain_454	3	STRG.396.3	1
scaffold_11	skipped_exon	9816932	9817297	+	asmbl_5863	none	STRG.13985.2	1	STRG.13985.1,blat.proc3829877.chain_2474	2
scaffold_16	alternate_exon	12643335	12644767	-	asmbl_16578	none	STRG.19744.1,blat.proc3829897.chain_655	2	STRG.19744.2,blat.proc3829897.chain_656	2
scaffold_21	skipped_exon	8278443	8278631	+	asmbl_28818	none	blat.proc3829883.chain_1472	1	STRG.24353.1,STRG.24353.2,STRG.24353.3	3
scaffold_14	ends_in_intron	207831	207831	-	asmbl_12776	none	STRG.16702.5,Trinity_GG_26362_c1_g2_i1,blat.proc3829895.chain_1410	3	STRG.16702.1,STRG.16702.3,STRG.16702.4,blat.proc3829895.chain_1408,blat.proc3829895.chain_1409	5
scaffold_21	ends_in_intron	5284343	5284343	-	asmbl_27671	none	Trinity_GG_30438_c0_g1_i3,blat.proc3829899.chain_1147	2	STRG.24056.1,STRG.24056.2,STRG.24056.4,blat.proc3829899.chain_1144,blat.proc3829899.chain_1146	5
scaffold_14	retained_exon	14143477	14143575	+	asmbl_12511,asmbl_12513,asmbl_12514	none	STRG.17676.2,STRG.17676.4,STRG.17676.5	3	STRG.17676.1,STRG.17676.3,blat.proc3829879.chain_2283,blat.proc3829879.chain_2284	4
scaffold_1	retained_intron	18485288	18485976	-	asmbl_1112,asmbl_1113	none	STRG.1300.1,STRG.1300.3	2	blat.proc3829887.chain_1212	1
scaffold_21	alt_acceptor	676034	676035	-	asmbl_27365,asmbl_27369,asmbl_27370	none	STRG.23740.3,STRG.23740.4,STRG.23740.5	3	STRG.23740.2,blat.proc3829899.chain_807	2
scaffold_15	alternate_exon	14663441	14664675	+	asmbl_14641	none	STRG.18874.2,Trinity_GG_10354_c1_g1_i1,blat.proc3829879.chain_3461	3	STRG.18874.1,Trinity_GG_10354_c0_g1_i4,blat.proc3829879.chain_3459	3
scaffold_4	retained_intron	12691444	12691546	-	asmbl_41696,asmbl_41697	none	STRG.4910.2,blat.proc3829889.chain_919,blat.proc3829889.chain_922	3	STRG.4910.1,blat.proc3829889.chain_920	2
scaffold_25	alt_acceptor	6058590	6058591	-	asmbl_34286	none	STRG.27468.1	1	STRG.27468.2	1
scaffold_13	ends_in_intron	9323411	9323411	-	asmbl_9981	none	STRG.16187.4	1	STRG.16187.1,STRG.16187.3,blat.proc3829895.chain_957,blat.proc3829895.chain_959	4
scaffold_4	retained_exon	12727979	12728062	+	asmbl_43076	none	STRG.4913.1,blat.proc3829873.chain_1262	2	STRG.4913.2,blat.proc3829873.chain_1261	2
scaffold_19	spliced_intron	12972587	12972817	-	asmbl_21785,asmbl_21789,asmbl_21791	none	STRG.22606.2,Trinity_GG_29578_c0_g1_i1,Trinity_GG_29578_c0_g1_i6,Trinity_GG_29578_c0_g1_i7,blat.proc3829897.chain_3318,blat.proc3829897.chain_3322,blat.proc3829897.chain_3325	7	STRG.22606.3,STRG.22606.5,Trinity_GG_29578_c0_g1_i5,blat.proc3829897.chain_3321	4
scaffold_17	alternate_exon	9490892	9491101	+	asmbl_18224	none	STRG.20560.1,Trinity_GG_11271_c0_g1_i2,blat.proc3829881.chain_1381	3	STRG.20560.2,Trinity_GG_11271_c0_g1_i1,blat.proc3829881.chain_1382	3
scaffold_9	spliced_intron	17849137	17851107	+	asmbl_54632,asmbl_54633	none	STRG.11860.1,STRG.11860.2	2	STRG.11860.3,Trinity_GG_6607_c1_g1_i2,Trinity_GG_6607_c2_g1_i1,blat.proc3829877.chain_590,blat.proc3829877.chain_591	5
scaffold_12	retained_exon	10533666	10533775	+	asmbl_8892	none	STRG.15006.1,Trinity_GG_8266_c0_g1_i2,blat.proc3829877.chain_3466	3	STRG.15006.2,Trinity_GG_8266_c0_g1_i1,blat.proc3829877.chain_3468	3
scaffold_5	starts_in_intron	13087619	13087619	-	asmbl_45889	none	STRG.6534.2	1	STRG.6534.1,blat.proc3829889.chain_2599,blat.proc3829889.chain_2600	3
scaffold_18	retained_exon	2833801	2834055	+	asmbl_20449	none	STRG.21133.1,blat.proc3829881.chain_1916	2	STRG.21133.2,blat.proc3829881.chain_1915,blat.proc3829881.chain_1923	3
scaffold_13	retained_intron	12104495	12104907	+	asmbl_11314	none	STRG.16334.2,Trinity_GG_8989_c0_g1_i3,blat.proc3829879.chain_1101	3	STRG.16334.1,Trinity_GG_8989_c0_g1_i1,blat.proc3829879.chain_1102	3
scaffold_17	alt_donor	9825990	9825991	-	asmbl_19244,asmbl_19246,asmbl_19249	none	STRG.20586.1,STRG.20586.3,blat.proc3829897.chain_1539,blat.proc3829897.chain_1540	4	STRG.20586.2,STRG.20586.4,blat.proc3829897.chain_1537,blat.proc3829897.chain_1538	4
scaffold_9	alt_acceptor	9735872	9735873	+	asmbl_54231	none	STRG.11341.4	1	blat.proc3829877.chain_145,blat.proc3829877.chain_151,blat.proc3829877.chain_153	3
scaffold_19	alternate_exon	4793391	4793476	-	asmbl_21335	none	STRG.22043.1,Trinity_GG_29309_c0_g1_i2,blat.proc3829897.chain_2802	3	STRG.22043.3,Trinity_GG_29309_c0_g1_i3,blat.proc3829897.chain_2801	3
scaffold_7	alt_acceptor	13866490	13866491	-	asmbl_50140	none	blat.proc3829891.chain_1674	1	STRG.9469.1,blat.proc3829891.chain_1673	2
scaffold_16	alternate_exon	4140781	4140842	-	asmbl_16225	none	blat.proc3829897.chain_298	1	STRG.19217.2	1
scaffold_15	ends_in_intron	4095753	4095753	+	asmbl_14064	none	blat.proc3829879.chain_2783	1	STRG.18140.1,STRG.18140.2,blat.proc3829879.chain_2785,blat.proc3829879.chain_2787	4
scaffold_16	alt_acceptor	9147209	9147210	+	asmbl_17267	none	STRG.19509.2	1	STRG.19509.1	1
scaffold_2	starts_in_intron	5896924	5896924	+	asmbl_24472	none	STRG.1971.2,Trinity_GG_1100_c0_g1_i1,blat.proc3829871.chain_2002	3	STRG.1971.1,Trinity_GG_1100_c0_g1_i2,blat.proc3829871.chain_2003	3
scaffold_14	starts_in_intron	2941564	2941564	-	asmbl_12973	none	blat.proc3829895.chain_1609	1	STRG.16884.1,STRG.16884.2,STRG.16884.3,blat.proc3829895.chain_1610,blat.proc3829895.chain_1611	5
scaffold_5	starts_in_intron	8138032	8138032	+	asmbl_44198	none	blat.proc3829873.chain_2335	1	STRG.6171.1,STRG.6171.2,STRG.6171.3,blat.proc3829873.chain_2332,blat.proc3829873.chain_2333,blat.proc3829873.chain_2334	6
scaffold_15	alt_acceptor	1265032	1265033	+	asmbl_13938	none	STRG.17926.1	1	blat.proc3829879.chain_2600,blat.proc3829879.chain_2602	2
scaffold_13	skipped_exon	5598978	5599604	-	asmbl_9660	none	STRG.15854.2	1	STRG.15854.1	1
scaffold_2	spliced_intron	13961990	13962517	-	asmbl_23564	none	STRG.2384.1,blat.proc3829887.chain_2238	2	STRG.2384.2,blat.proc3829887.chain_2237	2
scaffold_14	alternate_exon	14106449	14107281	-	asmbl_13661	none	STRG.17663.2	1	STRG.17663.1	1
scaffold_10	starts_in_intron	5010714	5010714	-	asmbl_3250	none	blat.proc3829893.chain_748	1	blat.proc3829893.chain_747,blat.proc3829893.chain_749	2
scaffold_3	retained_intron	3271219	3271370	-	asmbl_38719	none	Trinity_GG_18653_c0_g1_i2,blat.proc3829887.chain_2795	2	STRG.3088.2,blat.proc3829887.chain_2793	2
scaffold_10	skipped_exon	13002218	13002734	+	asmbl_4845	none	STRG.12901.2,blat.proc3829877.chain_1480	2	STRG.12901.1,blat.proc3829877.chain_1478	2
scaffold_7	retained_exon	9864296	9864322	-	asmbl_49903,asmbl_49904	none	STRG.9178.4,blat.proc3829891.chain_1416	2	blat.proc3829891.chain_1417	1
scaffold_14	starts_in_intron	11551952	11551952	+	asmbl_12370	none	blat.proc3829879.chain_2181	1	STRG.17475.1,STRG.17475.2,blat.proc3829879.chain_2180	3
scaffold_13	spliced_intron	8955354	8955451	+	asmbl_11146,asmbl_11147,asmbl_11150,asmbl_11151	none	STRG.16151.1,STRG.16151.2,STRG.16151.3,blat.proc3829879.chain_861,blat.proc3829879.chain_862,blat.proc3829879.chain_864	6	blat.proc3829879.chain_863,blat.proc3829879.chain_865	2
scaffold_7	starts_in_intron	13963188	13963188	-	asmbl_50150	none	Trinity_GG_22284_c0_g1_i1,blat.proc3829891.chain_1622	2	STRG.9486.1,Trinity_GG_22284_c0_g1_i2,blat.proc3829891.chain_1623	3
scaffold_1	alt_donor	5989931	5989932	+	asmbl_1802	none	STRG.398.1,blat.proc3829871.chain_462	2	STRG.398.2	1
scaffold_2	alternate_exon	16285039	16285130	+	asmbl_25138	none	STRG.2560.2,blat.proc3829871.chain_2743	2	STRG.2560.1,blat.proc3829871.chain_2742,blat.proc3829871.chain_2744	3
scaffold_17	retained_exon	7960323	7960383	-	asmbl_19105	none	STRG.20403.2,blat.proc3829897.chain_1373	2	STRG.20403.1,blat.proc3829897.chain_1374	2
scaffold_18	alt_acceptor	4442806	4442807	+	asmbl_20547	none	STRG.21223.2,blat.proc3829881.chain_2126	2	STRG.21223.1,blat.proc3829881.chain_2127	2
scaffold_23	starts_in_intron	7215652	7215652	+	asmbl_30977	none	Trinity_GG_14340_c0_g1_i2,blat.proc3829883.chain_2877	2	STRG.26024.1,blat.proc3829883.chain_2876	2
scaffold_10	starts_in_intron	4336341	4336341	-	asmbl_3201	none	blat.proc3829893.chain_648	1	STRG.12268.1,STRG.12268.2,blat.proc3829893.chain_646,blat.proc3829893.chain_647	4
scaffold_8	ends_in_intron	8970319	8970319	-	asmbl_52978	none	Trinity_GG_22678_c0_g2_i1,blat.proc3829891.chain_2313	2	STRG.10140.1,STRG.10140.2,blat.proc3829891.chain_2309,blat.proc3829891.chain_2311,blat.proc3829891.chain_2312	5
scaffold_12	spliced_intron	11324172	11324264	+	asmbl_8925	none	STRG.15051.1,Trinity_GG_8310_c0_g1_i2,blat.proc3829877.chain_3550	3	STRG.15051.2,Trinity_GG_8310_c0_g1_i1,blat.proc3829877.chain_3549	3
scaffold_2	starts_in_intron	10685782	10685782	+	asmbl_24756	none	STRG.2235.3,Trinity_GG_1265_c0_g1_i3,blat.proc3829871.chain_2352	3	STRG.2235.1,Trinity_GG_1265_c0_g1_i1,blat.proc3829871.chain_2350	3
scaffold_16	alt_donor	8025915	8025916	-	asmbl_16395	none	STRG.19429.2	1	STRG.19429.1,blat.proc3829897.chain_471	2
scaffold_4	alternate_exon	6946100	6948089	+	asmbl_42771	none	STRG.4536.3	1	Trinity_GG_2515_c0_g1_i7,blat.proc3829873.chain_902	2
scaffold_1	alt_acceptor	9516420	9516421	-	asmbl_549	none	blat.proc3829887.chain_520	1	STRG.644.1	1
scaffold_25	alternate_exon	8706600	8707409	+	asmbl_33748,asmbl_33751	none	blat.proc3829885.chain_692,blat.proc3829885.chain_695	2	STRG.27679.1,Trinity_GG_15273_c0_g1_i6,blat.proc3829885.chain_700,blat.proc3829885.chain_701	4
scaffold_15	starts_in_intron	5739351	5739351	-	asmbl_15245	none	blat.proc3829895.chain_3018	1	STRG.18248.1,STRG.18248.2,STRG.18248.3,STRG.18248.4	4
scaffold_13	spliced_intron	3585540	3585773	-	asmbl_9515	none	STRG.15660.2,blat.proc3829895.chain_372	2	STRG.15660.1,Trinity_GG_25771_c0_g1_i1,blat.proc3829895.chain_373	3
scaffold_6	skipped_exon	18210334	18211757	-	asmbl_49166	none	STRG.8489.2	1	STRG.8489.1	1
scaffold_8	spliced_intron	4852233	4852322	+	asmbl_51845,asmbl_51846	none	STRG.9942.1,STRG.9942.2,blat.proc3829875.chain_2454,blat.proc3829875.chain_2456	4	blat.proc3829875.chain_2452,blat.proc3829875.chain_2455	2
scaffold_11	alt_donor	2061501	2061502	+	asmbl_5314	none	STRG.13352.3	1	STRG.13352.1	1
scaffold_21	starts_in_intron	835370	835370	+	asmbl_28337	none	STRG.23762.4	1	STRG.23762.1,STRG.23762.3,blat.proc3829883.chain_910,blat.proc3829883.chain_911,blat.proc3829883.chain_912,blat.proc3829883.chain_913	6
scaffold_19	starts_in_intron	3184702	3184702	-	asmbl_21295	none	blat.proc3829897.chain_2758	1	STRG.21992.1	1
scaffold_28	starts_in_intron	7243692	7243692	+	asmbl_38348	none	blat.proc3829885.chain_2855	1	STRG.29770.1,blat.proc3829885.chain_2854	2
scaffold_4	alt_donor	4434004	4434005	+	asmbl_42600	none	Trinity_GG_2418_c0_g1_i4,blat.proc3829873.chain_732	2	STRG.4341.1,STRG.4341.2,STRG.4341.3,blat.proc3829873.chain_730,blat.proc3829873.chain_731	5
scaffold_11	starts_in_intron	8398119	8398119	+	asmbl_5727	none	blat.proc3829877.chain_2346	1	STRG.13845.1,STRG.13845.2,blat.proc3829877.chain_2342,blat.proc3829877.chain_2343,blat.proc3829877.chain_2344,blat.proc3829877.chain_2345	6
scaffold_17	retained_intron	3990087	3990195	-	asmbl_18884	none	blat.proc3829897.chain_1116	1	STRG.20147.1,STRG.20147.2,Trinity_GG_28339_c0_g1_i7,blat.proc3829897.chain_1111,blat.proc3829897.chain_1115,blat.proc3829897.chain_1117	6
scaffold_3	retained_intron	18733461	18733619	+	asmbl_40700	none	blat.proc3829873.chain_445	1	STRG.4058.1,blat.proc3829873.chain_444	2
scaffold_17	retained_exon	2634874	2635014	+	asmbl_17800	none	STRG.20044.4,blat.proc3829881.chain_876	2	STRG.20044.3,Trinity_GG_10982_c0_g1_i2,blat.proc3829881.chain_878	3
scaffold_2	skipped_exon	14193588	14193798	-	asmbl_23581	none	STRG.2417.2	1	blat.proc3829887.chain_2207,blat.proc3829887.chain_2208,blat.proc3829887.chain_2209,blat.proc3829887.chain_2210	4
scaffold_9	skipped_exon	3663798	3666612	+	asmbl_53887	none	STRG.10962.1,Trinity_GG_6100_c0_g1_i3,blat.proc3829875.chain_3440	3	blat.proc3829875.chain_3441	1
scaffold_16	retained_intron	8646214	8646704	+	asmbl_17233,asmbl_17235	none	STRG.19480.2,Trinity_GG_10683_c0_g1_i7,blat.proc3829881.chain_375,blat.proc3829881.chain_377	4	STRG.19480.1,blat.proc3829881.chain_373,blat.proc3829881.chain_374,blat.proc3829881.chain_376	4
scaffold_5	skipped_exon	18391820	18392095	-	asmbl_46212	none	STRG.6965.2,blat.proc3829889.chain_2989	2	STRG.6965.1	1
scaffold_5	alt_donor	8539883	8539884	-	asmbl_45601	none	STRG.6191.4,blat.proc3829889.chain_2250	2	STRG.6191.1,STRG.6191.3,blat.proc3829889.chain_2246,blat.proc3829889.chain_2248,blat.proc3829889.chain_2253	5
scaffold_6	alt_donor	8641700	8641701	+	asmbl_47103,asmbl_47104,asmbl_47105	none	STRG.7737.2,blat.proc3829875.chain_103,blat.proc3829875.chain_104,blat.proc3829875.chain_105	4	STRG.7737.1,STRG.7737.3	2
scaffold_17	spliced_intron	6803623	6804157	-	asmbl_19029	none	STRG.20323.2	1	STRG.20323.1	1
scaffold_13	alternate_exon	14561660	14561813	-	asmbl_10173	none	blat.proc3829895.chain_1170	1	STRG.16497.1,STRG.16497.2,STRG.16497.5,blat.proc3829895.chain_1167,blat.proc3829895.chain_1172	5
scaffold_13	retained_exon	5599202	5599305	-	asmbl_9661	none	STRG.15854.1	1	STRG.15854.2	1
scaffold_14	spliced_intron	2600144	2600258	-	asmbl_12948	none	STRG.16853.2	1	STRG.16853.1,Trinity_GG_26455_c0_g1_i1,blat.proc3829895.chain_1558	3
scaffold_16	starts_in_intron	3742046	3742046	-	asmbl_16168	none	blat.proc3829897.chain_207	1	STRG.19165.1,STRG.19165.2,blat.proc3829897.chain_208	3
scaffold_11	retained_intron	4760580	4761026	-	asmbl_6606	none	blat.proc3829893.chain_2020	1	STRG.13565.1,blat.proc3829893.chain_2021,blat.proc3829893.chain_2023	3
scaffold_16	spliced_intron	10448911	10449544	+	asmbl_17335,asmbl_17341	none	STRG.19602.1,Trinity_GG_10708_c0_g1_i3,blat.proc3829881.chain_423,blat.proc3829881.chain_424	4	STRG.19602.3,Trinity_GG_10708_c0_g1_i1,blat.proc3829881.chain_425,blat.proc3829881.chain_426	4
scaffold_12	spliced_intron	101136	101235	-	asmbl_7409	none	STRG.14409.1,blat.proc3829893.chain_2821	2	blat.proc3829893.chain_2822	1
scaffold_13	ends_in_intron	7667238	7667238	+	asmbl_11052	none	STRG.16036.1	1	blat.proc3829879.chain_717	1
scaffold_8	alt_acceptor	4185971	4185972	+	asmbl_51803	none	STRG.9886.1,blat.proc3829875.chain_2409	2	blat.proc3829875.chain_2406	1
scaffold_22	alternate_exon	11477658	11477808	+	asmbl_29681	none	STRG.25476.4,Trinity_GG_14064_c0_g1_i4,blat.proc3829883.chain_2404	3	STRG.25476.1,STRG.25476.2,STRG.25476.3,Trinity_GG_14064_c0_g1_i2,Trinity_GG_14064_c0_g1_i3,blat.proc3829883.chain_2402,blat.proc3829883.chain_2403	7
scaffold_8	alt_donor	10578305	10578306	-	asmbl_53106	none	STRG.10286.2	1	STRG.10286.1	1
scaffold_22	alt_acceptor	4837713	4837714	+	asmbl_29335	none	STRG.24882.1,Trinity_GG_13764_c0_g1_i1,blat.proc3829883.chain_1939	3	STRG.24882.2	1
scaffold_4	starts_in_intron	2739614	2739614	-	asmbl_41143	none	blat.proc3829889.chain_282	1	STRG.4236.1,blat.proc3829889.chain_281,blat.proc3829889.chain_283	3
scaffold_22	alternate_exon	8196272	8196411	+	asmbl_29560	none	STRG.25157.2	1	STRG.25157.1	1
scaffold_6	starts_in_intron	17492876	17492876	+	asmbl_47696	none	blat.proc3829875.chain_783	1	STRG.8440.1,Trinity_GG_4612_c0_g2_i1,blat.proc3829875.chain_784	3
scaffold_11	ends_in_intron	2833893	2833893	+	asmbl_5338	none	blat.proc3829877.chain_1885	1	STRG.13398.1,blat.proc3829877.chain_1884,blat.proc3829877.chain_1886	3
scaffold_9	retained_intron	13279621	13279904	+	asmbl_54474	none	STRG.11615.4,blat.proc3829877.chain_401	2	STRG.11615.1,STRG.11615.2,STRG.11615.3,blat.proc3829877.chain_402,blat.proc3829877.chain_403	5
scaffold_21	retained_intron	3174719	3174850	+	asmbl_28490	none	blat.proc3829883.chain_1059	1	STRG.23945.1,STRG.23945.2,STRG.23945.3,STRG.23945.6,blat.proc3829883.chain_1058,blat.proc3829883.chain_1060	6
scaffold_23	alt_donor	4158646	4158647	+	asmbl_30790	none	STRG.25814.3	1	STRG.25814.2,Trinity_GG_14238_c0_g1_i1,blat.proc3829883.chain_2686	3
scaffold_3	spliced_intron	7739054	7739724	+	asmbl_40140	none	STRG.3362.2	1	STRG.3362.1,Trinity_GG_1881_c0_g1_i1,blat.proc3829871.chain_3501,blat.proc3829871.chain_3503	4
scaffold_21	ends_in_intron	7485896	7485896	-	asmbl_27844	none	blat.proc3829899.chain_1337	1	STRG.24264.1,STRG.24264.2,blat.proc3829899.chain_1336	3
scaffold_13	spliced_intron	381874	382053	-	asmbl_9291,asmbl_9295	none	STRG.15421.1,STRG.15421.3,blat.proc3829895.chain_149	3	STRG.15421.2,blat.proc3829895.chain_151	2
scaffold_4	starts_in_intron	19054199	19054199	-	asmbl_42161	none	blat.proc3829889.chain_1586	1	STRG.5497.1	1
scaffold_15	retained_intron	15856548	15857174	+	asmbl_14779,asmbl_14780	none	blat.proc3829879.chain_3543,blat.proc3829879.chain_3545	2	STRG.18964.2,STRG.18964.4,STRG.18964.6,Trinity_GG_10383_c0_g1_i2,Trinity_GG_10383_c0_g1_i3,Trinity_GG_10383_c0_g1_i8,blat.proc3829879.chain_3539,blat.proc3829879.chain_3541,blat.proc3829879.chain_3542,blat.proc3829879.chain_3544	10
scaffold_17	retained_intron	14546159	14546293	+	asmbl_18528	none	STRG.20918.2,Trinity_GG_11505_c0_g1_i1,Trinity_GG_11505_c0_g1_i2,blat.proc3829881.chain_1765	4	STRG.20918.5	1
scaffold_21	starts_in_intron	2266271	2266271	+	asmbl_28395	none	STRG.23835.2	1	STRG.23835.1,blat.proc3829883.chain_930	2
scaffold_28	spliced_intron	5010558	5011216	+	asmbl_38250,asmbl_38256	none	STRG.29628.1,blat.proc3829885.chain_2752	2	blat.proc3829885.chain_2751	1
scaffold_11	alternate_exon	6252374	6258655	+	asmbl_5590	none	blat.proc3829877.chain_2181	1	STRG.13670.5	1
scaffold_12	alt_donor	7430616	7430617	+	asmbl_8718,asmbl_8719	none	STRG.14810.1,Trinity_GG_8184_c0_g1_i1,Trinity_GG_8184_c0_g1_i2,blat.proc3829877.chain_3305,blat.proc3829877.chain_3306	5	STRG.14810.2	1
scaffold_15	alt_acceptor	1508681	1508682	+	asmbl_13955	none	STRG.17946.1	1	STRG.17946.2,Trinity_GG_9880_c0_g1_i4,blat.proc3829879.chain_2634	3
scaffold_8	alternate_exon	17495619	17501963	+	asmbl_52471,asmbl_52474,asmbl_52478,asmbl_52479,asmbl_52480	none	STRG.10668.1,STRG.10668.3,blat.proc3829875.chain_3152,blat.proc3829875.chain_3153,blat.proc3829875.chain_3156,blat.proc3829875.chain_3157,blat.proc3829875.chain_3158	7	STRG.10668.4	1
scaffold_21	retained_exon	8278485	8278505	+	asmbl_28821	none	STRG.24353.3	1	blat.proc3829883.chain_1472	1
scaffold_20	alt_donor	7209004	7209005	+	asmbl_25861	none	STRG.23279.1,blat.proc3829883.chain_405	2	STRG.23279.2,Trinity_GG_12855_c0_g1_i1,blat.proc3829883.chain_404	3
scaffold_21	retained_intron	11303261	11303360	+	asmbl_28927	none	blat.proc3829883.chain_1611	1	STRG.24590.1	1
scaffold_3	retained_intron	7739054	7739724	+	asmbl_40138	none	STRG.3362.1,Trinity_GG_1881_c0_g1_i1,blat.proc3829871.chain_3501,blat.proc3829871.chain_3503	4	STRG.3362.2	1
scaffold_8	retained_intron	10040800	10041129	-	asmbl_53091	none	STRG.10251.1,blat.proc3829891.chain_2365	2	STRG.10251.3,blat.proc3829891.chain_2364	2
scaffold_12	ends_in_intron	13042452	13042452	-	asmbl_8041	none	Trinity_GG_25489_c0_g1_i1,blat.proc3829893.chain_3575	2	STRG.15176.1,blat.proc3829893.chain_3576	2
scaffold_7	ends_in_intron	689388	689388	+	asmbl_50436	none	STRG.8594.1	1	STRG.8594.2,STRG.8594.4	2
scaffold_28	retained_intron	4194207	4194283	-	asmbl_37523	none	blat.proc3829901.chain_2719	1	STRG.29591.1,blat.proc3829901.chain_2720	2
scaffold_2	spliced_intron	884927	885046	+	asmbl_24142,asmbl_24144,asmbl_24145	none	STRG.1563.2,STRG.1563.3,blat.proc3829871.chain_1566	3	blat.proc3829871.chain_1567	1
scaffold_20	retained_exon	2403441	2403500	+	asmbl_25642	none	blat.proc3829883.chain_91	1	STRG.22962.1,blat.proc3829883.chain_92	2
scaffold_22	alt_donor	7439755	7439756	+	asmbl_29475	none	STRG.25067.2,blat.proc3829883.chain_2138	2	STRG.25067.3	1
scaffold_17	skipped_exon	12198250	12200487	+	asmbl_18403	none	STRG.20743.2	1	STRG.20743.3,blat.proc3829881.chain_1576	2
scaffold_11	retained_intron	1809111	1809270	-	asmbl_6423	none	STRG.13332.1	1	blat.proc3829893.chain_1805	1
scaffold_12	alt_donor	9680918	9680919	-	asmbl_7815	none	STRG.14931.1,blat.proc3829893.chain_3330	2	STRG.14931.2	1
scaffold_22	spliced_intron	7488327	7488420	-	asmbl_30173	none	STRG.25072.1,blat.proc3829899.chain_2158	2	STRG.25072.2,Trinity_GG_31012_c0_g1_i1,blat.proc3829899.chain_2157	3
scaffold_19	alternate_exon	7704905	7706190	+	asmbl_22295	none	STRG.22243.1	1	STRG.22243.2,blat.proc3829881.chain_3149	2
scaffold_14	starts_in_intron	8693044	8693044	+	asmbl_12245	none	Trinity_GG_9472_c0_g1_i2,blat.proc3829879.chain_1940	2	STRG.17288.1,blat.proc3829879.chain_1941	2
scaffold_1	alternate_exon	18742141	18742207	-	asmbl_1123	none	STRG.1303.3,blat.proc3829887.chain_1197	2	STRG.1303.2	1
scaffold_4	alternate_exon	5646184	5651118	-	asmbl_41354	none	STRG.4469.3,blat.proc3829889.chain_614	2	Trinity_GG_19533_c0_g1_i2,blat.proc3829889.chain_602	2
scaffold_25	spliced_intron	339732	339809	-	asmbl_33965	none	Trinity_GG_32157_c1_g1_i1,blat.proc3829901.chain_370	2	Trinity_GG_32157_c1_g1_i2,blat.proc3829901.chain_369	2
scaffold_28	alternate_exon	2640000	2640104	+	asmbl_38086,asmbl_38087	none	STRG.29420.2,STRG.29420.3,Trinity_GG_16327_c0_g1_i2,Trinity_GG_16327_c0_g1_i3,blat.proc3829885.chain_2550,blat.proc3829885.chain_2551	6	STRG.29420.1,blat.proc3829885.chain_2549	2
scaffold_12	retained_exon	26756	26881	-	asmbl_7400	none	STRG.14396.1,blat.proc3829893.chain_2805	2	STRG.14396.2	1
scaffold_1	retained_intron	20699413	20699481	+	asmbl_2636	none	STRG.1410.2,blat.proc3829871.chain_1480,blat.proc3829871.chain_1482	3	STRG.1410.1,blat.proc3829871.chain_1481	2
scaffold_2	alt_donor	2790920	2790921	-	asmbl_22941	none	STRG.1724.1,blat.proc3829887.chain_1561	2	STRG.1724.2,blat.proc3829887.chain_1558	2
scaffold_27	starts_in_intron	6265754	6265754	-	asmbl_37005	none	blat.proc3829901.chain_2156	1	STRG.28997.1,STRG.28997.2,blat.proc3829901.chain_2157	3
scaffold_4	alternate_exon	16482626	16482723	+	asmbl_43308	none	STRG.5224.1	1	STRG.5224.2	1
scaffold_6	spliced_intron	1749516	1750052	-	asmbl_48058,asmbl_48059,asmbl_48065,asmbl_48066,asmbl_48067	none	STRG.7224.2,STRG.7224.3,STRG.7224.4,STRG.7224.6,blat.proc3829889.chain_3169,blat.proc3829889.chain_3170	6	STRG.7224.1,STRG.7224.5,Trinity_GG_21030_c0_g1_i2,blat.proc3829889.chain_3171,blat.proc3829889.chain_3173,blat.proc3829889.chain_3174	6
scaffold_5	skipped_exon	7740584	7741185	+	asmbl_44169	none	STRG.6144.3	1	STRG.6144.1,STRG.6144.2,blat.proc3829873.chain_2302	3
scaffold_20	skipped_exon	12074725	12075218	-	asmbl_27143	none	blat.proc3829899.chain_691	1	STRG.23691.1,blat.proc3829899.chain_688,blat.proc3829899.chain_690	3
scaffold_24	spliced_intron	6833657	6834175	+	asmbl_32354,asmbl_32358	none	STRG.26717.1,STRG.26717.4,blat.proc3829883.chain_3660	3	Trinity_GG_14799_c1_g1_i1,blat.proc3829883.chain_3657,blat.proc3829883.chain_3664	3
scaffold_12	retained_intron	7172399	7172720	+	asmbl_8685,asmbl_8687	none	blat.proc3829877.chain_3240,blat.proc3829877.chain_3243	2	STRG.14775.2,blat.proc3829877.chain_3241,blat.proc3829877.chain_3242	3
scaffold_10	spliced_intron	9043353	9045014	-	asmbl_3566	none	STRG.12645.1,blat.proc3829893.chain_1156	2	STRG.12645.2,Trinity_GG_24079_c0_g1_i2,blat.proc3829893.chain_1153	3
scaffold_6	spliced_intron	12484297	12484408	+	asmbl_47341	none	STRG.8000.4	1	STRG.8000.2,STRG.8000.3,Trinity_GG_4381_c0_g1_i1,Trinity_GG_4381_c0_g1_i3,blat.proc3829875.chain_393,blat.proc3829875.chain_394	6
scaffold_19	retained_exon	857705	858401	+	asmbl_22021	none	blat.proc3829881.chain_2793	1	STRG.21868.1,Trinity_GG_12075_c1_g1_i1,blat.proc3829881.chain_2795	3
scaffold_20	ends_in_intron	11080533	11080533	-	asmbl_27056	none	Trinity_GG_30170_c0_g1_i9,blat.proc3829899.chain_623	2	STRG.23611.1,STRG.23611.2,blat.proc3829899.chain_622,blat.proc3829899.chain_624,blat.proc3829899.chain_625,blat.proc3829899.chain_627	6
scaffold_20	ends_in_intron	11677782	11677782	-	asmbl_27108	none	blat.proc3829899.chain_656	1	STRG.23659.1,STRG.23659.2,STRG.23659.3,blat.proc3829899.chain_657,blat.proc3829899.chain_658,blat.proc3829899.chain_659	6
scaffold_4	spliced_intron	10924315	10924565	-	asmbl_41614	none	STRG.4814.1,blat.proc3829889.chain_874	2	STRG.4814.2,blat.proc3829889.chain_875	2
scaffold_24	spliced_intron	5951108	5951617	+	asmbl_32262,asmbl_32272,asmbl_32279,asmbl_32280	none	STRG.26645.1,blat.proc3829883.chain_3537,blat.proc3829883.chain_3541,blat.proc3829883.chain_3545	4	blat.proc3829883.chain_3543	1
scaffold_9	alternate_exon	13891465	13891500	-	asmbl_55416	none	STRG.11643.2,blat.proc3829893.chain_14	2	STRG.11643.1,STRG.11643.3	2
scaffold_4	ends_in_intron	17573413	17573413	-	asmbl_42033	none	Trinity_GG_19957_c4_g1_i1,blat.proc3829889.chain_1337	2	STRG.5346.1,STRG.5346.4	2
scaffold_28	starts_in_intron	3824407	3824407	-	asmbl_37497,asmbl_37498	none	blat.proc3829901.chain_2574,blat.proc3829901.chain_2575	2	STRG.29556.1,STRG.29556.2,blat.proc3829901.chain_2576	3
scaffold_1	alt_acceptor	3255231	3255232	+	asmbl_1575,asmbl_1578	none	STRG.201.2,Trinity_GG_125_c0_g1_i1,Trinity_GG_125_c0_g1_i2,blat.proc3829871.chain_209,blat.proc3829871.chain_212	5	STRG.201.1,Trinity_GG_125_c0_g1_i4,Trinity_GG_125_c0_g1_i5,blat.proc3829871.chain_211,blat.proc3829871.chain_213	5
scaffold_11	alt_donor	2101440	2101441	-	asmbl_6451,asmbl_6453	none	STRG.13364.1,blat.proc3829893.chain_1824,blat.proc3829893.chain_1827	3	STRG.13364.2,blat.proc3829893.chain_1825	2
scaffold_42	alt_acceptor	26087	26088	+	asmbl_43661	none	STRG.30020.2	1	STRG.30020.1,blat.proc3829885.chain_3097	2
scaffold_4	retained_intron	6332069	6332164	+	asmbl_42728	none	STRG.4501.1,Trinity_GG_2462_c1_g1_i1,blat.proc3829873.chain_810	3	Trinity_GG_2462_c1_g1_i2,blat.proc3829873.chain_811	2
scaffold_12	alt_acceptor	9646728	9646729	-	asmbl_7812	none	STRG.14926.1,blat.proc3829893.chain_3326	2	STRG.14926.2	1
scaffold_1	starts_in_intron	6968710	6968710	+	asmbl_1859	none	Trinity_GG_303_c0_g1_i2,blat.proc3829871.chain_540	2	STRG.486.1,Trinity_GG_303_c0_g1_i1,blat.proc3829871.chain_539	3
scaffold_14	retained_exon	11664755	11665268	-	asmbl_13497,asmbl_13498,asmbl_13500	none	STRG.17495.1,STRG.17495.2,blat.proc3829895.chain_2185,blat.proc3829895.chain_2186,blat.proc3829895.chain_2187	5	blat.proc3829895.chain_2184	1
scaffold_19	spliced_intron	5155129	5155211	+	asmbl_22158,asmbl_22159	none	STRG.22072.3,blat.proc3829881.chain_3012,blat.proc3829881.chain_3014	3	STRG.22072.1,STRG.22072.2,STRG.22072.4,blat.proc3829881.chain_3011,blat.proc3829881.chain_3013	5
scaffold_13	starts_in_intron	14153761	14153761	+	asmbl_11410	none	Trinity_GG_9078_c0_g1_i3,blat.proc3829879.chain_1231	2	STRG.16445.1,Trinity_GG_9078_c0_g1_i1,Trinity_GG_9078_c0_g1_i2,blat.proc3829879.chain_1228,blat.proc3829879.chain_1230	5
scaffold_17	alt_acceptor	10123523	10123524	+	asmbl_18305	none	STRG.20619.3	1	STRG.20619.1,STRG.20619.2	2
scaffold_20	spliced_intron	8002938	8003022	-	asmbl_26874	none	STRG.23335.2	1	STRG.23335.1,Trinity_GG_30011_c0_g1_i2,blat.proc3829899.chain_331	3
scaffold_13	retained_intron	3092016	3092119	-	asmbl_9475	none	STRG.15601.1	1	STRG.15601.2	1
scaffold_4	retained_intron	8427515	8427786	-	asmbl_41514	none	blat.proc3829889.chain_776	1	STRG.4672.2,blat.proc3829889.chain_775	2
scaffold_1	retained_intron	10949081	10949745	+	asmbl_2028,asmbl_2029	none	STRG.713.2,blat.proc3829871.chain_748,blat.proc3829871.chain_753	3	STRG.713.3,STRG.713.4,blat.proc3829871.chain_749,blat.proc3829871.chain_750,blat.proc3829871.chain_752,blat.proc3829871.chain_754	6
scaffold_4	retained_exon	13876609	13876629	-	asmbl_41763	none	blat.proc3829889.chain_1023,blat.proc3829889.chain_1025	2	STRG.5020.1,blat.proc3829889.chain_1021	2
scaffold_20	alt_acceptor	10095991	10095992	+	asmbl_26079	none	STRG.23539.2	1	STRG.23539.1,blat.proc3829883.chain_627	2
scaffold_16	retained_intron	293907	294060	-	asmbl_16016	none	STRG.19013.2,blat.proc3829897.chain_52	2	STRG.19013.1,blat.proc3829897.chain_50,blat.proc3829897.chain_51	3
scaffold_25	starts_in_intron	3497021	3497021	+	asmbl_33419	none	blat.proc3829885.chain_312	1	STRG.27269.1,blat.proc3829885.chain_311	2
scaffold_19	starts_in_intron	12116605	12116605	+	asmbl_22553	none	Trinity_GG_12433_c1_g1_i2,blat.proc3829881.chain_3423	2	STRG.22524.1,Trinity_GG_12433_c1_g1_i1,blat.proc3829881.chain_3422	3
scaffold_2	starts_in_intron	16293766	16293766	+	asmbl_25146	none	STRG.2561.3	1	STRG.2561.1,STRG.2561.2,blat.proc3829871.chain_2768,blat.proc3829871.chain_2769	4
scaffold_21	alt_acceptor	6666270	6666271	-	asmbl_27768	none	STRG.24181.2	1	STRG.24181.1,blat.proc3829899.chain_1261	2
scaffold_1	alternate_exon	8631159	8631688	-	asmbl_471	none	blat.proc3829887.chain_448	1	STRG.568.3,blat.proc3829887.chain_445	2
scaffold_17	alt_donor	3143460	3143461	-	asmbl_18847	none	STRG.20085.3,Trinity_GG_28260_c0_g1_i2,blat.proc3829897.chain_1000	3	STRG.20085.1,STRG.20085.2,Trinity_GG_28260_c0_g1_i1,blat.proc3829897.chain_1001	4
scaffold_14	alternate_exon	14107221	14107281	-	asmbl_13661	none	STRG.17663.2	1	STRG.17663.3	1
scaffold_1	skipped_exon	19042448	19044609	+	asmbl_2565,asmbl_2566	none	STRG.1337.2,blat.proc3829871.chain_1392	2	STRG.1337.3	1
scaffold_2	ends_in_intron	13064182	13064182	+	asmbl_24847	none	blat.proc3829871.chain_2459	1	STRG.2330.1,STRG.2330.2,blat.proc3829871.chain_2456,blat.proc3829871.chain_2457,blat.proc3829871.chain_2458,blat.proc3829871.chain_2461	6
scaffold_3	retained_intron	13800170	13800928	-	asmbl_39254	none	Trinity_GG_19038_c0_g1_i1,blat.proc3829887.chain_3467	2	STRG.3721.1,STRG.3721.2,Trinity_GG_19038_c0_g1_i4,blat.proc3829887.chain_3468,blat.proc3829887.chain_3469	5
scaffold_9	ends_in_intron	13303441	13303441	-	asmbl_55389,asmbl_55390	none	blat.proc3829891.chain_3709,blat.proc3829891.chain_3714	2	STRG.11618.1	1
scaffold_1	retained_intron	5748921	5749003	+	asmbl_1778	none	blat.proc3829871.chain_438	1	STRG.373.1,STRG.373.2,STRG.373.3,blat.proc3829871.chain_435,blat.proc3829871.chain_437	5
scaffold_9	alternate_exon	15278706	15278871	+	asmbl_54530	none	STRG.11713.2,blat.proc3829877.chain_480	2	STRG.11713.1,Trinity_GG_6549_c0_g1_i2,blat.proc3829877.chain_481	3
scaffold_9	starts_in_intron	1931608	1931608	-	asmbl_54821	none	blat.proc3829891.chain_3043	1	STRG.10870.1,blat.proc3829891.chain_3042	2
scaffold_15	starts_in_intron	12404491	12404491	-	asmbl_15595	none	Trinity_GG_27496_c0_g1_i1,blat.proc3829895.chain_3433	2	STRG.18683.1,Trinity_GG_27496_c0_g1_i2,blat.proc3829895.chain_3434	3
scaffold_16	alt_donor	14084620	14084621	-	asmbl_16610	none	STRG.19792.1	1	blat.proc3829897.chain_695	1
scaffold_4	skipped_exon	6947237	6947567	+	asmbl_42766,asmbl_42771	none	STRG.4536.3,blat.proc3829873.chain_899	2	STRG.4536.1,STRG.4536.2,blat.proc3829873.chain_901,blat.proc3829873.chain_903,blat.proc3829873.chain_905	5
scaffold_7	retained_intron	5265960	5265992	-	asmbl_49691	none	STRG.8856.1,blat.proc3829891.chain_1206	2	STRG.8856.2	1
scaffold_14	starts_in_intron	12816304	12816304	-	asmbl_13596	none	STRG.17587.2,blat.proc3829895.chain_2274	2	STRG.17587.1,blat.proc3829895.chain_2275,blat.proc3829895.chain_2276	3
scaffold_10	starts_in_intron	531629	531629	-	asmbl_2873	none	STRG.11924.1,Trinity_GG_23614_c0_g1_i1,blat.proc3829893.chain_315	3	STRG.11924.2	1
scaffold_10	spliced_intron	10273218	10273385	+	asmbl_4688	none	STRG.12705.1	1	STRG.12705.2	1
scaffold_1	retained_intron	14427728	14428466	-	asmbl_928	none	STRG.1042.2,blat.proc3829887.chain_961	2	STRG.1042.1,blat.proc3829887.chain_964	2
scaffold_11	spliced_intron	3767796	3767816	-	asmbl_6556	none	STRG.13488.2	1	Trinity_GG_24570_c0_g1_i1,Trinity_GG_24570_c0_g1_i4	2
scaffold_18	alternate_exon	8595277	8598790	+	asmbl_20872	none	STRG.21515.2	1	STRG.21515.1,STRG.21515.3,blat.proc3829881.chain_2521	3
scaffold_8	alt_donor	44426	44427	-	asmbl_52679	none	STRG.9700.1,blat.proc3829891.chain_1974	2	STRG.9700.2	1
scaffold_1	starts_in_intron	7772790	7772790	+	asmbl_1911,asmbl_1913	none	blat.proc3829871.chain_602,blat.proc3829871.chain_604	2	blat.proc3829871.chain_603	1
scaffold_7	retained_intron	3955080	3955398	-	asmbl_49645	none	blat.proc3829891.chain_1087	1	STRG.8791.1,STRG.8791.2,blat.proc3829891.chain_1086,blat.proc3829891.chain_1088,blat.proc3829891.chain_1091,blat.proc3829891.chain_1092,blat.proc3829891.chain_1093	7
scaffold_13	alternate_exon	14155557	14155680	+	asmbl_11405	none	blat.proc3829879.chain_1227	1	STRG.16445.1,Trinity_GG_9078_c0_g1_i1,blat.proc3829879.chain_1230	3
scaffold_27	alternate_exon	145657	145925	-	asmbl_36595	none	STRG.28528.3,Trinity_GG_32960_c0_g1_i5,blat.proc3829901.chain_1701	3	STRG.28528.2	1
scaffold_24	starts_in_intron	8544819	8544819	+	asmbl_32428	none	Trinity_GG_14837_c0_g1_i2,blat.proc3829883.chain_3729	2	STRG.26846.1	1
scaffold_21	alt_acceptor	1802855	1802856	+	asmbl_28385,asmbl_28386	none	STRG.23808.1,STRG.23808.2,blat.proc3829883.chain_976,blat.proc3829883.chain_977	4	blat.proc3829883.chain_975	1
scaffold_6	retained_intron	8174054	8174789	-	asmbl_48474,asmbl_48478	none	Trinity_GG_21366_c0_g1_i14,Trinity_GG_21366_c0_g1_i3,blat.proc3829889.chain_3717,blat.proc3829889.chain_3722	4	STRG.7691.1,STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3716,blat.proc3829889.chain_3719,blat.proc3829889.chain_3720,blat.proc3829889.chain_3721,blat.proc3829889.chain_3724	8
scaffold_5	starts_in_intron	15140000	15140000	-	asmbl_46036	none	blat.proc3829889.chain_2761	1	STRG.6698.1,blat.proc3829889.chain_2760	2
scaffold_12	starts_in_intron	13043076	13043076	-	asmbl_8041	none	blat.proc3829893.chain_3575	1	STRG.15176.1,blat.proc3829893.chain_3576	2
scaffold_20	alt_acceptor	967344	967345	+	asmbl_25550	none	STRG.22792.1	1	STRG.22792.3,Trinity_GG_12589_c0_g1_i3,Trinity_GG_12589_c0_g1_i4	3
scaffold_28	alt_donor	33340	33341	+	asmbl_37942	none	STRG.29211.2,blat.proc3829885.chain_2361	2	STRG.29211.1,blat.proc3829885.chain_2359,blat.proc3829885.chain_2360	3
scaffold_24	starts_in_intron	1911322	1911322	-	asmbl_32738	none	blat.proc3829899.chain_3441	1	STRG.26399.4,blat.proc3829899.chain_3440	2
scaffold_22	alt_donor	4897214	4897215	+	asmbl_29338	none	STRG.24890.1,blat.proc3829883.chain_1950	2	STRG.24890.2	1
scaffold_13	alt_donor	9535344	9535345	-	asmbl_9993	none	STRG.16202.2	1	STRG.16202.1,STRG.16202.3,STRG.16202.4,STRG.16202.5,blat.proc3829895.chain_990,blat.proc3829895.chain_991	6
scaffold_1	alt_donor	11763024	11763025	+	asmbl_2129,asmbl_2130,asmbl_2132	none	STRG.795.1,STRG.795.2,blat.proc3829871.chain_892,blat.proc3829871.chain_893	4	STRG.795.3	1
scaffold_3	ends_in_intron	13424982	13424982	-	asmbl_39214	none	Trinity_GG_19014_c0_g2_i1,blat.proc3829887.chain_3425	2	STRG.3690.5	1
scaffold_13	ends_in_intron	1040388	1040388	+	asmbl_10494	none	Trinity_GG_8509_c0_g1_i2,blat.proc3829879.chain_150	2	STRG.15471.1,STRG.15471.2,blat.proc3829879.chain_149	3
scaffold_13	alt_donor	11755312	11755313	+	asmbl_11291	none	STRG.16303.2	1	STRG.16303.1	1
scaffold_7	starts_in_intron	17990672	17990672	+	asmbl_51394	none	STRG.9629.2,blat.proc3829875.chain_2082	2	STRG.9629.1	1
scaffold_28	ends_in_intron	7255933	7255933	+	asmbl_38352	none	blat.proc3829885.chain_2879	1	STRG.29771.1,STRG.29771.2,STRG.29771.3,STRG.29771.4,Trinity_GG_16499_c0_g1_i1,Trinity_GG_16499_c0_g1_i3,blat.proc3829885.chain_2878,blat.proc3829885.chain_2880	8
scaffold_11	skipped_exon	3496183	3497672	+	asmbl_5399	none	STRG.13472.1	1	blat.proc3829877.chain_1902	1
scaffold_947	alt_acceptor	3720	3721	+	asmbl_55810	none	STRG.30489.2,blat.proc3829885.chain_3456	2	STRG.30489.1	1
scaffold_10	alternate_exon	11969824	11970244	+	asmbl_4789	none	Trinity_GG_7032_c0_g1_i14,blat.proc3829877.chain_1320	2	STRG.12831.2,Trinity_GG_7032_c0_g1_i16,blat.proc3829877.chain_1316	3
scaffold_2	spliced_intron	892931	893048	+	asmbl_24160,asmbl_24163	none	STRG.1565.3,blat.proc3829871.chain_1634	2	STRG.1565.1,STRG.1565.2,STRG.1565.4,blat.proc3829871.chain_1631,blat.proc3829871.chain_1632,blat.proc3829871.chain_1635,blat.proc3829871.chain_1636	7
scaffold_9	spliced_intron	11793088	11794280	-	asmbl_55268,asmbl_55270,asmbl_55272	none	STRG.11484.1,blat.proc3829891.chain_3590,blat.proc3829891.chain_3592,blat.proc3829891.chain_3594	4	STRG.11484.4,STRG.11484.5,blat.proc3829891.chain_3593	3
scaffold_13	starts_in_intron	14155557	14155557	+	asmbl_11404	none	Trinity_GG_9078_c0_g1_i5,blat.proc3829879.chain_1229	2	STRG.16445.1,Trinity_GG_9078_c0_g1_i1,blat.proc3829879.chain_1230	3
scaffold_3	ends_in_intron	6048556	6048556	-	asmbl_38839	none	Trinity_GG_18777_c0_g1_i1,blat.proc3829887.chain_2985	2	STRG.3255.1,STRG.3255.2,STRG.3255.5,STRG.3255.7,blat.proc3829887.chain_2986	5
scaffold_17	alt_donor	10067457	10067458	+	asmbl_18293	none	STRG.20614.1,Trinity_GG_11298_c0_g1_i1,blat.proc3829881.chain_1451	3	STRG.20614.2,Trinity_GG_11298_c0_g1_i2,blat.proc3829881.chain_1450	3
scaffold_21	alt_acceptor	8570418	8570419	+	asmbl_28837	none	STRG.24370.2	1	STRG.24370.1,Trinity_GG_13491_c0_g1_i1,blat.proc3829883.chain_1488	3
scaffold_4	ends_in_intron	6844437	6844437	+	asmbl_42760	none	blat.proc3829873.chain_874	1	STRG.4529.1,Trinity_GG_2499_c0_g1_i2,blat.proc3829873.chain_875	3
scaffold_26	ends_in_intron	5560846	5560846	+	asmbl_35550	none	blat.proc3829885.chain_1210	1	STRG.28249.1,STRG.28249.2,blat.proc3829885.chain_1211	3
scaffold_1	spliced_intron	6297508	6297670	-	asmbl_353,asmbl_354,asmbl_355,asmbl_357,asmbl_358,asmbl_359	none	STRG.424.1,STRG.424.2,STRG.424.3,STRG.424.4,STRG.424.5,blat.proc3829887.chain_303,blat.proc3829887.chain_304,blat.proc3829887.chain_306,blat.proc3829887.chain_307	9	blat.proc3829887.chain_305	1
scaffold_26	spliced_intron	3361212	3361377	+	asmbl_35304	none	STRG.28006.2,blat.proc3829885.chain_898	2	blat.proc3829885.chain_899	1
scaffold_4	starts_in_intron	13108756	13108756	-	asmbl_41714	none	blat.proc3829889.chain_1029	1	STRG.4953.1,blat.proc3829889.chain_1028	2
scaffold_12	starts_in_intron	10575695	10575695	+	asmbl_8904	none	blat.proc3829877.chain_3544	1	STRG.15013.1,blat.proc3829877.chain_3542	2
scaffold_42	starts_in_intron	25856	25856	+	asmbl_43660	none	Trinity_GG_16627_c0_g1_i2,blat.proc3829885.chain_3096	2	STRG.30020.1,STRG.30020.2,blat.proc3829885.chain_3097	3
scaffold_11	starts_in_intron	11943862	11943862	-	asmbl_7027	none	blat.proc3829893.chain_2568	1	STRG.14160.1	1
scaffold_23	retained_intron	9886338	9886445	+	asmbl_31100	none	Trinity_GG_14461_c0_g1_i4,blat.proc3829883.chain_3073	2	STRG.26167.1,blat.proc3829883.chain_3074,blat.proc3829883.chain_3075	3
scaffold_17	spliced_intron	1602805	1602948	+	asmbl_17746	none	STRG.19983.1,blat.proc3829881.chain_822	2	blat.proc3829881.chain_823	1
scaffold_27	starts_in_intron	6603041	6603041	-	asmbl_37020	none	blat.proc3829901.chain_2175	1	STRG.29010.1,blat.proc3829901.chain_2177	2
scaffold_26	retained_intron	9773422	9774402	+	asmbl_35777,asmbl_35779	none	STRG.28501.2,STRG.28501.6,Trinity_GG_15770_c0_g1_i1,Trinity_GG_15770_c0_g1_i5,blat.proc3829885.chain_1533,blat.proc3829885.chain_1534	6	STRG.28501.1,STRG.28501.3,STRG.28501.5,STRG.28501.9,blat.proc3829885.chain_1535,blat.proc3829885.chain_1538	6
scaffold_28	starts_in_intron	552621	552621	+	asmbl_37980,asmbl_37981	none	Trinity_GG_16210_c0_g1_i3,Trinity_GG_16210_c0_g1_i4,blat.proc3829885.chain_2364,blat.proc3829885.chain_2365	4	STRG.29256.1,Trinity_GG_16210_c0_g1_i2,blat.proc3829885.chain_2363	3
scaffold_15	alt_donor	14324364	14324365	-	asmbl_15735	none	Trinity_GG_27599_c0_g1_i7,blat.proc3829895.chain_3600	2	STRG.18855.3,Trinity_GG_27599_c0_g1_i1,blat.proc3829895.chain_3605	3
scaffold_6	alt_donor	17829825	17829826	+	asmbl_47726	none	STRG.8463.1	1	STRG.8463.2,blat.proc3829875.chain_856	2
scaffold_1325	retained_intron	2091	2231	+	asmbl_11684	none	STRG.30565.2,Trinity_GG_16889_c0_g1_i2,blat.proc3829885.chain_3503	3	STRG.30565.1,STRG.30565.3,STRG.30565.4	3
scaffold_1	starts_in_intron	14191947	14191947	-	asmbl_877	none	blat.proc3829887.chain_944	1	STRG.1005.1,blat.proc3829887.chain_945,blat.proc3829887.chain_947,blat.proc3829887.chain_948,blat.proc3829887.chain_949	5
scaffold_5	retained_exon	239064	239201	-	asmbl_45153	none	STRG.5594.4	1	STRG.5594.2	1
scaffold_25	starts_in_intron	9042917	9042917	-	asmbl_34449	none	blat.proc3829901.chain_987	1	STRG.27702.1,STRG.27702.2,STRG.27702.3,blat.proc3829901.chain_982,blat.proc3829901.chain_984,blat.proc3829901.chain_985,blat.proc3829901.chain_986,blat.proc3829901.chain_988	8
scaffold_17	spliced_intron	13196847	13197082	-	asmbl_19406	none	STRG.20803.2,blat.proc3829897.chain_1732	2	blat.proc3829897.chain_1736	1
scaffold_14	starts_in_intron	7436993	7436993	-	asmbl_13183	none	STRG.17165.1,blat.proc3829895.chain_1846	2	blat.proc3829895.chain_1843,blat.proc3829895.chain_1844	2
scaffold_26	alternate_exon	9312201	9312441	+	asmbl_35737,asmbl_35738,asmbl_35741	none	STRG.28479.2,blat.proc3829885.chain_1513,blat.proc3829885.chain_1514	3	STRG.28479.3,blat.proc3829885.chain_1519	2
scaffold_24	starts_in_intron	1231508	1231508	-	asmbl_32709	none	STRG.26373.1,blat.proc3829899.chain_3338	2	blat.proc3829899.chain_3336	1
scaffold_4	spliced_intron	17031495	17031641	+	asmbl_43359,asmbl_43360	none	STRG.5305.2,STRG.5305.3,blat.proc3829873.chain_1531	3	blat.proc3829873.chain_1534	1
scaffold_1	spliced_intron	12683677	12684002	+	asmbl_2231,asmbl_2233	none	STRG.890.1,STRG.890.2,blat.proc3829871.chain_957	3	blat.proc3829871.chain_955,blat.proc3829871.chain_956,blat.proc3829871.chain_958	3
scaffold_9	alt_acceptor	13300121	13300122	-	asmbl_55380,asmbl_55381,asmbl_55382,asmbl_55385,asmbl_55386	none	STRG.11625.2,STRG.11625.3,STRG.11625.5,STRG.11625.6,STRG.11625.7	5	STRG.11625.1,STRG.11625.4	2
scaffold_13	alt_acceptor	11979303	11979304	-	asmbl_10081	none	blat.proc3829895.chain_1066	1	STRG.16317.1	1
scaffold_21	retained_intron	6616948	6617116	+	asmbl_28694	none	blat.proc3829883.chain_1359	1	STRG.24174.1,blat.proc3829883.chain_1356,blat.proc3829883.chain_1357,blat.proc3829883.chain_1358	4
scaffold_1	alt_donor	907397	907398	-	asmbl_35	none	STRG.45.3	1	STRG.45.1	1
scaffold_5	spliced_intron	10136208	10136286	+	asmbl_44325	none	STRG.6303.1,blat.proc3829873.chain_2354,blat.proc3829873.chain_2357	3	Trinity_GG_3386_c0_g1_i2,blat.proc3829873.chain_2355	2
scaffold_27	starts_in_intron	941669	941669	-	asmbl_36678	none	Trinity_GG_32961_c0_g1_i3,blat.proc3829901.chain_1705	2	STRG.28573.1,STRG.28573.2,Trinity_GG_32961_c0_g1_i1,Trinity_GG_32961_c0_g1_i2,blat.proc3829901.chain_1704,blat.proc3829901.chain_1706	6
scaffold_22	starts_in_intron	1006179	1006179	+	asmbl_29212	none	blat.proc3829883.chain_1809	1	STRG.24742.2,STRG.24742.3,Trinity_GG_13691_c0_g1_i10,blat.proc3829883.chain_1807,blat.proc3829883.chain_1808,blat.proc3829883.chain_1810,blat.proc3829883.chain_1812	7
scaffold_15	ends_in_intron	14858312	14858312	-	asmbl_15767	none	blat.proc3829895.chain_3662	1	STRG.18887.1,blat.proc3829895.chain_3661	2
scaffold_28	starts_in_intron	7397495	7397495	+	asmbl_38369	none	STRG.29789.2,blat.proc3829885.chain_2887	2	STRG.29789.1,Trinity_GG_16505_c0_g1_i2,blat.proc3829885.chain_2888	3
scaffold_5	alt_donor	18698560	18698561	-	asmbl_46229	none	STRG.6987.1	1	STRG.6987.2,STRG.6987.3	2
scaffold_15	ends_in_intron	5725	5725	-	asmbl_14914	none	Trinity_GG_27038_c1_g1_i2,blat.proc3829895.chain_2568	2	STRG.17846.1,blat.proc3829895.chain_2567	2
scaffold_7	alt_donor	8281964	8281965	+	asmbl_50867	none	blat.proc3829875.chain_1512	1	STRG.9053.1,blat.proc3829875.chain_1511,blat.proc3829875.chain_1513	3
scaffold_14	alternate_exon	8008700	8009314	+	asmbl_12171	none	blat.proc3829879.chain_1949	1	STRG.17203.2,STRG.17203.3,blat.proc3829879.chain_1947	3
scaffold_23	alt_acceptor	2380776	2380777	+	asmbl_30701	none	blat.proc3829883.chain_2599	1	STRG.25691.1	1
scaffold_6	alternate_exon	2902130	2902820	-	asmbl_48132	none	STRG.7282.2,blat.proc3829889.chain_3189	2	STRG.7282.1,blat.proc3829889.chain_3188	2
scaffold_1	alt_donor	13100567	13100568	-	asmbl_798	none	STRG.941.2,blat.proc3829887.chain_823	2	STRG.941.1,blat.proc3829887.chain_825	2
scaffold_6	starts_in_intron	17871767	17871767	-	asmbl_49141	none	STRG.8467.1,blat.proc3829891.chain_755	2	STRG.8467.2	1
scaffold_6	retained_exon	2926280	2926388	-	asmbl_48140,asmbl_48141	none	STRG.7290.2,STRG.7290.3,blat.proc3829889.chain_3235,blat.proc3829889.chain_3236	4	STRG.7290.4,blat.proc3829889.chain_3237	2
scaffold_8	alternate_exon	16504948	16517924	-	asmbl_53418,asmbl_53422,asmbl_53424	none	blat.proc3829891.chain_2860,blat.proc3829891.chain_2864,blat.proc3829891.chain_2869	3	Trinity_GG_22960_c0_g1_i9,blat.proc3829891.chain_2858	2
scaffold_21	alt_acceptor	10499252	10499253	-	asmbl_28077,asmbl_28078	none	STRG.24508.1,STRG.24508.2,blat.proc3829899.chain_1641	3	STRG.24508.3	1
scaffold_24	alternate_exon	4376932	4380061	+	asmbl_32212	none	STRG.26580.2	1	blat.proc3829883.chain_3478	1
scaffold_300	starts_in_intron	3501	3501	+	asmbl_40854	none	Trinity_GG_16748_c0_g1_i1	1	STRG.30247.1,STRG.30247.2,STRG.30247.3,blat.proc3829885.chain_3278,blat.proc3829885.chain_3279,blat.proc3829885.chain_3281,blat.proc3829885.chain_3282	7
scaffold_2	retained_intron	891608	892306	+	asmbl_24155,asmbl_24156	none	STRG.1565.1,STRG.1565.4,Trinity_GG_899_c0_g1_i1,Trinity_GG_899_c0_g1_i2,blat.proc3829871.chain_1629,blat.proc3829871.chain_1630,blat.proc3829871.chain_1631,blat.proc3829871.chain_1635	8	STRG.1565.2,STRG.1565.3,blat.proc3829871.chain_1632,blat.proc3829871.chain_1636	4
scaffold_13	starts_in_intron	899038	899038	-	asmbl_9339	none	Trinity_GG_25690_c0_g1_i4,blat.proc3829895.chain_219	2	STRG.15448.1,STRG.15448.2,STRG.15448.3,STRG.15448.4,STRG.15448.5,STRG.15448.6,STRG.15448.7,blat.proc3829895.chain_212,blat.proc3829895.chain_213,blat.proc3829895.chain_214,blat.proc3829895.chain_215,blat.proc3829895.chain_216	12
scaffold_16	skipped_exon	10835446	10836280	+	asmbl_17362	none	blat.proc3829881.chain_531	1	STRG.19623.1,blat.proc3829881.chain_530	2
scaffold_15	alt_acceptor	15156159	15156160	+	asmbl_14666,asmbl_14667,asmbl_14669	none	STRG.18895.5,Trinity_GG_10325_c0_g1_i7,blat.proc3829879.chain_3399,blat.proc3829879.chain_3401	4	Trinity_GG_10325_c0_g1_i8,blat.proc3829879.chain_3400,blat.proc3829879.chain_3402	3
scaffold_6	spliced_intron	3218305	3218462	-	asmbl_48179,asmbl_48180	none	STRG.7319.1,blat.proc3829889.chain_3331	2	STRG.7319.2,STRG.7319.3,blat.proc3829889.chain_3332,blat.proc3829889.chain_3333	4
scaffold_19	retained_intron	11483966	11484174	-	asmbl_21616	none	Trinity_GG_29530_c0_g1_i8,blat.proc3829897.chain_3186	2	STRG.22477.1,STRG.22477.3,blat.proc3829897.chain_3181,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184,blat.proc3829897.chain_3187,blat.proc3829897.chain_3192,blat.proc3829897.chain_3193	8
scaffold_3	ends_in_intron	14775494	14775494	-	asmbl_39370	none	Trinity_GG_19121_c0_g1_i3,blat.proc3829887.chain_3624	2	STRG.3820.1,STRG.3820.2,STRG.3820.3,blat.proc3829887.chain_3623,blat.proc3829887.chain_3625	5
scaffold_25	spliced_intron	6067602	6068378	-	asmbl_34287,asmbl_34295	none	STRG.27475.1,blat.proc3829901.chain_717,blat.proc3829901.chain_722	3	blat.proc3829901.chain_716,blat.proc3829901.chain_718,blat.proc3829901.chain_719	3
scaffold_4	ends_in_intron	19600456	19600456	-	asmbl_42214,asmbl_42216	none	STRG.5542.2,Trinity_GG_20132_c0_g1_i1,blat.proc3829889.chain_1638	3	STRG.5542.1	1
scaffold_13	ends_in_intron	2335206	2335206	+	asmbl_10564,asmbl_10569,asmbl_10571	none	STRG.15543.2,STRG.15543.5,STRG.15543.8,blat.proc3829879.chain_166,blat.proc3829879.chain_174,blat.proc3829879.chain_175	6	STRG.15543.4,STRG.15543.9	2
scaffold_2	spliced_intron	9788213	9788312	+	asmbl_24720,asmbl_24722,asmbl_24723,asmbl_24724,asmbl_24725	none	STRG.2185.1,blat.proc3829871.chain_2216,blat.proc3829871.chain_2219,blat.proc3829871.chain_2220,blat.proc3829871.chain_2221,blat.proc3829871.chain_2222	6	blat.proc3829871.chain_2217	1
scaffold_26	ends_in_intron	5893741	5893741	-	asmbl_34919	none	blat.proc3829901.chain_1397	1	STRG.28281.1,STRG.28281.2,STRG.28281.3,blat.proc3829901.chain_1394,blat.proc3829901.chain_1395,blat.proc3829901.chain_1396	6
scaffold_12	alt_acceptor	14132052	14132053	+	asmbl_9020	none	STRG.15226.2	1	STRG.15226.1,STRG.15226.3,blat.proc3829877.chain_3679	3
scaffold_1	alt_acceptor	13060220	13060221	-	asmbl_795	none	STRG.940.2	1	STRG.940.1,blat.proc3829887.chain_832	2
scaffold_23	retained_exon	6331560	6332174	+	asmbl_30909	none	blat.proc3829883.chain_2835	1	STRG.25966.3,blat.proc3829883.chain_2837	2
scaffold_24	alt_donor	10668157	10668158	+	asmbl_32586	none	STRG.27005.2,blat.proc3829885.chain_123	2	STRG.27005.1,blat.proc3829885.chain_124	2
scaffold_3	retained_exon	8253586	8255632	+	asmbl_40165	none	STRG.3399.1,Trinity_GG_1923_c0_g1_i2,blat.proc3829871.chain_3568	3	STRG.3399.2	1
scaffold_1	alt_donor	13926178	13926179	-	asmbl_865,asmbl_867	none	STRG.997.1,STRG.997.3,blat.proc3829887.chain_871	3	STRG.997.2	1
scaffold_15	skipped_exon	15409791	15410182	+	asmbl_14723	none	STRG.18921.10	1	STRG.18921.2,STRG.18921.3,STRG.18921.9,blat.proc3829879.chain_3515,blat.proc3829879.chain_3517	5
scaffold_20	retained_intron	11599629	11600558	-	asmbl_27095	none	STRG.23657.1	1	STRG.23657.2	1
scaffold_10	alt_donor	5010560	5010561	-	asmbl_3249,asmbl_3252	none	STRG.12317.2,blat.proc3829893.chain_747	2	STRG.12317.1,blat.proc3829893.chain_748	2
scaffold_12	spliced_intron	4204687	4205332	+	asmbl_8547	none	STRG.14587.3	1	STRG.14587.1,Trinity_GG_8068_c0_g1_i2,blat.proc3829877.chain_3111	3
scaffold_1	retained_exon	12747184	12747222	-	asmbl_759	none	Trinity_GG_17462_c0_g1_i4,blat.proc3829887.chain_757	2	STRG.892.1,STRG.892.5,blat.proc3829887.chain_754	3
scaffold_4	retained_exon	18530187	18530230	-	asmbl_42130	none	STRG.5455.2	1	STRG.5455.1	1
scaffold_27	alt_acceptor	1551417	1551418	+	asmbl_35981,asmbl_35982	none	STRG.28623.1,Trinity_GG_15852_c0_g1_i3,Trinity_GG_15852_c0_g1_i5,blat.proc3829885.chain_1669,blat.proc3829885.chain_1670	5	STRG.28623.2	1
scaffold_9	retained_intron	12637304	12637387	+	asmbl_54429,asmbl_54430,asmbl_54431	none	STRG.11574.1,STRG.11574.3,STRG.11574.5,Trinity_GG_6469_c2_g1_i1,blat.proc3829877.chain_360	5	Trinity_GG_6469_c2_g2_i2,blat.proc3829877.chain_361	2
scaffold_5	alternate_exon	13115549	13115643	-	asmbl_45895	none	STRG.6540.2,blat.proc3829889.chain_2581	2	STRG.6540.1,blat.proc3829889.chain_2582	2
scaffold_4	alt_donor	4124653	4124654	-	asmbl_41240	none	STRG.4324.1,blat.proc3829889.chain_447	2	STRG.4324.3,blat.proc3829889.chain_449	2
scaffold_6	retained_exon	3320658	3320770	-	asmbl_48191	none	STRG.7329.1,STRG.7329.3,blat.proc3829889.chain_3341	3	STRG.7329.2,STRG.7329.4,blat.proc3829889.chain_3342	3
scaffold_6	alternate_exon	6012077	6012182	-	asmbl_48387	none	STRG.7544.1	1	STRG.7544.2	1
scaffold_20	retained_intron	11600743	11600915	-	asmbl_27092,asmbl_27095	none	STRG.23657.1,STRG.23657.3	2	STRG.23657.2	1
scaffold_5	alt_acceptor	11643338	11643339	+	asmbl_44427	none	STRG.6416.1	1	STRG.6416.2,blat.proc3829873.chain_2518	2
scaffold_10	ends_in_intron	926603	926603	-	asmbl_2928	none	Trinity_GG_23671_c0_g1_i1,blat.proc3829893.chain_419	2	STRG.11959.1,Trinity_GG_23671_c0_g1_i3,blat.proc3829893.chain_420	3
scaffold_11	spliced_intron	13092994	13093788	+	asmbl_5999,asmbl_6004	none	blat.proc3829877.chain_2669,blat.proc3829877.chain_2675	2	STRG.14176.2,STRG.14176.4,blat.proc3829877.chain_2670,blat.proc3829877.chain_2673,blat.proc3829877.chain_2676,blat.proc3829877.chain_2677	6
scaffold_15	ends_in_intron	1506722	1506722	+	asmbl_13954	none	blat.proc3829879.chain_2633	1	STRG.17946.1	1
scaffold_1	ends_in_intron	11122957	11122957	+	asmbl_2056,asmbl_2057	none	blat.proc3829871.chain_789,blat.proc3829871.chain_790	2	STRG.730.1,blat.proc3829871.chain_787	2
scaffold_18	starts_in_intron	11472356	11472356	+	asmbl_20967	none	STRG.21671.2	1	STRG.21671.1,blat.proc3829881.chain_2630	2
scaffold_6	alt_acceptor	13230102	13230103	+	asmbl_47439,asmbl_47441,asmbl_47442,asmbl_47443,asmbl_47444,asmbl_47445,asmbl_47446,asmbl_47447	none	STRG.8077.1,STRG.8077.2,STRG.8077.3,STRG.8077.4,STRG.8077.5,STRG.8077.6,STRG.8077.7,blat.proc3829875.chain_501,blat.proc3829875.chain_503,blat.proc3829875.chain_504,blat.proc3829875.chain_506	11	blat.proc3829875.chain_500	1
scaffold_9	alt_donor	11889103	11889104	+	asmbl_54377,asmbl_54378	none	STRG.11505.1,STRG.11505.2	2	blat.proc3829877.chain_291	1
scaffold_1	retained_intron	14277132	14277229	+	asmbl_2344	none	STRG.1020.3,Trinity_GG_617_c0_g1_i1,blat.proc3829871.chain_1111	3	STRG.1020.1,STRG.1020.2,Trinity_GG_617_c0_g1_i4,Trinity_GG_617_c0_g1_i5,blat.proc3829871.chain_1109,blat.proc3829871.chain_1110	6
scaffold_26	spliced_intron	4110627	4110718	+	asmbl_35386	none	STRG.28091.1,blat.proc3829885.chain_967	2	STRG.28091.2,STRG.28091.3	2
scaffold_4	retained_intron	6129993	6130181	-	asmbl_41393	none	STRG.4483.1	1	STRG.4483.2	1
scaffold_20	retained_intron	11695106	11695323	-	asmbl_27116	none	blat.proc3829899.chain_666	1	blat.proc3829899.chain_665	1
scaffold_20	alt_donor	3712044	3712045	+	asmbl_25693	none	STRG.23058.2	1	STRG.23058.1,blat.proc3829883.chain_153,blat.proc3829883.chain_155	3
scaffold_1	starts_in_intron	14215325	14215325	+	asmbl_2334	none	blat.proc3829871.chain_1091	1	STRG.1007.1,blat.proc3829871.chain_1089,blat.proc3829871.chain_1090	3
scaffold_10	alternate_exon	4574584	4574959	-	asmbl_3218	none	blat.proc3829893.chain_741	1	STRG.12283.1	1
scaffold_21	retained_intron	3120017	3120306	+	asmbl_28467,asmbl_28468,asmbl_28469	none	STRG.23929.1,STRG.23929.3,STRG.23929.4,Trinity_GG_13266_c1_g1_i1,blat.proc3829883.chain_1098,blat.proc3829883.chain_1100,blat.proc3829883.chain_1101	7	STRG.23929.2	1
scaffold_14	spliced_intron	10479149	10479549	+	asmbl_12303	none	STRG.17382.1,blat.proc3829879.chain_2095	2	STRG.17382.2,blat.proc3829879.chain_2092	2
scaffold_26	alt_acceptor	1326526	1326527	-	asmbl_34675,asmbl_34679,asmbl_34680	none	STRG.27898.1,STRG.27898.3,STRG.27898.5	3	STRG.27898.2,STRG.27898.4	2
scaffold_23	retained_exon	10323928	10324071	-	asmbl_31858	none	STRG.26217.1,blat.proc3829899.chain_3272	2	STRG.26217.2,blat.proc3829899.chain_3271	2
scaffold_1210	alt_donor	2558	2559	-	asmbl_9229	none	STRG.30539.1	1	STRG.30539.2	1
scaffold_21	retained_intron	1300424	1301225	-	asmbl_27431,asmbl_27432,asmbl_27433	none	STRG.23801.1,STRG.23801.3,Trinity_GG_30279_c0_g1_i1,Trinity_GG_30279_c0_g1_i2,blat.proc3829899.chain_875,blat.proc3829899.chain_876	6	STRG.23801.2,STRG.23801.4,Trinity_GG_30279_c0_g1_i3,blat.proc3829899.chain_877	4
scaffold_16	spliced_intron	125643	125887	+	asmbl_16785,asmbl_16787	none	STRG.18995.1,Trinity_GG_10419_c0_g1_i3,Trinity_GG_10419_c0_g1_i4,blat.proc3829879.chain_3618,blat.proc3829879.chain_3620	5	STRG.18995.2,Trinity_GG_10419_c0_g1_i2,blat.proc3829879.chain_3619	3
scaffold_2	starts_in_intron	1489930	1489930	+	asmbl_24230,asmbl_24231	none	STRG.1626.2,blat.proc3829871.chain_1681	2	STRG.1626.1	1
scaffold_18	starts_in_intron	5538259	5538259	-	asmbl_19881	none	blat.proc3829897.chain_2172	1	STRG.21300.1,blat.proc3829897.chain_2173	2
scaffold_6	retained_intron	10546689	10547006	+	asmbl_47225	none	STRG.7884.1,blat.proc3829875.chain_268	2	Trinity_GG_4325_c0_g1_i2,blat.proc3829875.chain_269	2
scaffold_27	alternate_exon	5927468	5927477	-	asmbl_37001	none	blat.proc3829901.chain_2166	1	STRG.28980.2,blat.proc3829901.chain_2163	2
scaffold_22	alt_donor	8620834	8620835	+	asmbl_29572	none	Trinity_GG_13952_c0_g1_i1	1	STRG.25196.1	1
scaffold_28	starts_in_intron	6489421	6489421	+	asmbl_38320	none	Trinity_GG_16440_c0_g1_i2,blat.proc3829885.chain_2766	2	blat.proc3829885.chain_2767,blat.proc3829885.chain_2768	2
scaffold_14	alternate_exon	6909278	6909666	+	asmbl_12093	none	blat.proc3829879.chain_1883	1	blat.proc3829879.chain_1879	1
scaffold_23	retained_intron	7005777	7005932	-	asmbl_31726	none	Trinity_GG_31538_c0_g1_i2,blat.proc3829899.chain_3076	2	STRG.26005.2	1
scaffold_7	alt_acceptor	3951625	3951626	-	asmbl_49642	none	STRG.8790.1,blat.proc3829891.chain_1144	2	STRG.8790.2,blat.proc3829891.chain_1145	2
scaffold_22	alt_acceptor	4583195	4583196	+	asmbl_29325	none	STRG.24876.2	1	STRG.24876.1,blat.proc3829883.chain_1828	2
scaffold_1	alt_acceptor	18029822	18029823	-	asmbl_1074	none	STRG.1264.4	1	blat.proc3829871.chain_1253	1
scaffold_15	spliced_intron	9289598	9289814	+	asmbl_14327,asmbl_14328,asmbl_14329	none	STRG.18450.1,STRG.18450.2,blat.proc3829879.chain_3090	3	blat.proc3829879.chain_3091	1
scaffold_2	starts_in_intron	17545318	17545318	+	asmbl_25210	none	blat.proc3829871.chain_2799	1	STRG.2638.1,blat.proc3829871.chain_2800	2
scaffold_4	alt_donor	6499144	6499145	-	asmbl_41423	none	STRG.4511.2,blat.proc3829889.chain_657	2	STRG.4511.1,blat.proc3829889.chain_656	2
scaffold_16	alt_acceptor	5515684	5515685	-	asmbl_16298	none	STRG.19297.1,Trinity_GG_27814_c0_g1_i1,blat.proc3829897.chain_264	3	STRG.19297.2	1
scaffold_4	ends_in_intron	19711661	19711661	+	asmbl_43504	none	STRG.5566.2	1	STRG.5566.1,blat.proc3829873.chain_1755	2
scaffold_2	spliced_intron	4124203	4124621	-	asmbl_23078	none	STRG.1854.1,blat.proc3829887.chain_1661	2	Trinity_GG_18018_c0_g1_i2,blat.proc3829887.chain_1660	2
scaffold_2	alt_acceptor	7881629	7881630	+	asmbl_24617,asmbl_24619,asmbl_24623,asmbl_24624	none	STRG.2088.1,Trinity_GG_1183_c0_g1_i10,Trinity_GG_1183_c0_g1_i16,Trinity_GG_1183_c0_g1_i20,Trinity_GG_1183_c0_g1_i4,blat.proc3829871.chain_2178,blat.proc3829871.chain_2182,blat.proc3829871.chain_2183,blat.proc3829871.chain_2185	9	Trinity_GG_1183_c0_g1_i2,blat.proc3829871.chain_2181	2
scaffold_14	alt_acceptor	12626474	12626475	-	asmbl_13564,asmbl_13567,asmbl_13568,asmbl_13569,asmbl_13570,asmbl_13571	none	STRG.17566.1,STRG.17566.2,blat.proc3829895.chain_2327,blat.proc3829895.chain_2329,blat.proc3829895.chain_2330,blat.proc3829895.chain_2331,blat.proc3829895.chain_2332	7	blat.proc3829895.chain_2326	1
scaffold_5	ends_in_intron	414836	414836	+	asmbl_43759	none	Trinity_GG_3075_c1_g1_i1,blat.proc3829873.chain_1808	2	STRG.5605.1,blat.proc3829873.chain_1806	2
scaffold_22	alt_donor	6502495	6502496	-	asmbl_30101	none	STRG.24970.2	1	STRG.24970.1,blat.proc3829899.chain_2076	2
scaffold_25	retained_exon	9940568	9940619	-	asmbl_34499	none	STRG.27802.1	1	STRG.27802.2	1
scaffold_8	alt_acceptor	12717460	12717461	+	asmbl_52331	none	STRG.10440.1,blat.proc3829875.chain_2922	2	STRG.10440.2,blat.proc3829875.chain_2923	2
scaffold_17	alt_acceptor	9832731	9832732	-	asmbl_19246,asmbl_19247	none	STRG.20586.2,STRG.20586.3	2	STRG.20586.1,STRG.20586.4,blat.proc3829897.chain_1537,blat.proc3829897.chain_1538,blat.proc3829897.chain_1539,blat.proc3829897.chain_1540	6
scaffold_22	alt_donor	9124205	9124206	-	asmbl_30279	none	STRG.25227.1	1	STRG.25227.2	1
scaffold_4	spliced_intron	4451696	4451771	+	asmbl_42609	none	STRG.4350.1	1	STRG.4350.2,blat.proc3829873.chain_763	2
scaffold_1	starts_in_intron	8634660	8634660	-	asmbl_471	none	blat.proc3829887.chain_448	1	STRG.568.1,STRG.568.2,STRG.568.3,blat.proc3829887.chain_445,blat.proc3829887.chain_447,blat.proc3829887.chain_449,blat.proc3829887.chain_450	7
scaffold_10	retained_exon	3065894	3065943	-	asmbl_3072	none	STRG.12119.3	1	STRG.12119.1,Trinity_GG_23763_c0_g1_i2,blat.proc3829893.chain_569	3
scaffold_26	ends_in_intron	8591903	8591903	-	asmbl_35011	none	Trinity_GG_32881_c0_g2_i1,blat.proc3829901.chain_1553	2	STRG.28423.1,blat.proc3829901.chain_1552	2
scaffold_4	alt_donor	16912391	16912392	+	asmbl_43346,asmbl_43349	none	STRG.5280.2,STRG.5280.5	2	STRG.5280.1,STRG.5280.4	2
scaffold_28	starts_in_intron	2595113	2595113	-	asmbl_37388	none	blat.proc3829901.chain_2545	1	STRG.29415.1,STRG.29415.2,blat.proc3829901.chain_2543	3
scaffold_12	ends_in_intron	11977225	11977225	+	asmbl_8934	none	blat.proc3829877.chain_3486	1	STRG.15093.1,blat.proc3829877.chain_3485	2
scaffold_5	spliced_intron	19463375	19463478	-	asmbl_46293	none	STRG.7036.1	1	STRG.7036.2	1
scaffold_9	ends_in_intron	1285883	1285883	+	asmbl_53791	none	blat.proc3829875.chain_3314	1	STRG.10831.1,blat.proc3829875.chain_3315	2
scaffold_8	skipped_exon	10585517	10587677	-	asmbl_53109	none	STRG.10285.1,blat.proc3829891.chain_2354	2	STRG.10285.2	1
scaffold_13	alt_donor	16460302	16460303	-	asmbl_10278	none	STRG.16689.5	1	STRG.16689.1,STRG.16689.3,STRG.16689.4,Trinity_GG_26334_c0_g1_i2,Trinity_GG_26334_c0_g1_i3,blat.proc3829895.chain_1353,blat.proc3829895.chain_1355,blat.proc3829895.chain_1357	8
scaffold_8	alternate_exon	3603907	3604458	+	asmbl_51770	none	STRG.9847.2,blat.proc3829875.chain_2273	2	STRG.9847.1,blat.proc3829875.chain_2272	2
scaffold_28	starts_in_intron	7272840	7272840	-	asmbl_37715	none	STRG.29774.1	1	STRG.29774.4	1
scaffold_1	alt_donor	14320880	14320881	+	asmbl_2359	none	STRG.1024.4,blat.proc3829871.chain_1130	2	STRG.1024.3,blat.proc3829871.chain_1126	2
scaffold_5	spliced_intron	15767254	15767399	+	asmbl_44677,asmbl_44684,asmbl_44685	none	STRG.6763.1,blat.proc3829873.chain_2876,blat.proc3829873.chain_2877,blat.proc3829873.chain_2882	4	blat.proc3829873.chain_2875,blat.proc3829873.chain_2880	2
scaffold_1	spliced_intron	5743594	5743804	+	asmbl_1773	none	STRG.371.1,Trinity_GG_206_c0_g1_i2,blat.proc3829871.chain_348	3	Trinity_GG_206_c0_g1_i1,blat.proc3829871.chain_349	2
scaffold_8	retained_exon	1339763	1339846	+	asmbl_51681	none	STRG.9754.1	1	blat.proc3829875.chain_2147	1
scaffold_28	alternate_exon	2317129	2317162	+	asmbl_38056	none	STRG.29386.2	1	STRG.29386.1,blat.proc3829885.chain_2512,blat.proc3829885.chain_2513	3
scaffold_18	skipped_exon	7661637	7662196	+	asmbl_20795	none	STRG.21461.1	1	STRG.21461.2,STRG.21461.4	2
scaffold_21	starts_in_intron	3169441	3169441	+	asmbl_28480	none	STRG.23945.6,blat.proc3829883.chain_1048	2	STRG.23945.1,STRG.23945.2,STRG.23945.3,blat.proc3829883.chain_1050,blat.proc3829883.chain_1051,blat.proc3829883.chain_1052,blat.proc3829883.chain_1053,blat.proc3829883.chain_1054,blat.proc3829883.chain_1056	9
scaffold_4	alternate_exon	3425371	3425720	-	asmbl_41183	none	blat.proc3829889.chain_395	1	STRG.4271.2	1
scaffold_27	starts_in_intron	502236	502236	-	asmbl_36645	none	STRG.28550.1,blat.proc3829901.chain_1739	2	STRG.28550.2,Trinity_GG_32981_c1_g1_i1,blat.proc3829901.chain_1740	3
scaffold_4	spliced_intron	5772794	5774235	-	asmbl_41377	none	STRG.4473.1,Trinity_GG_19525_c0_g1_i1,blat.proc3829889.chain_588	3	STRG.4473.2,blat.proc3829889.chain_589	2
scaffold_9	alternate_exon	5659030	5659061	+	asmbl_54048	none	STRG.11120.2	1	STRG.11120.1,blat.proc3829875.chain_3626	2
scaffold_9	starts_in_intron	6847721	6847721	-	asmbl_55037,asmbl_55038	none	STRG.11185.1,STRG.11185.2,blat.proc3829891.chain_3259,blat.proc3829891.chain_3260	4	STRG.11185.3,STRG.11185.4,blat.proc3829891.chain_3258	3
scaffold_1	alt_donor	16326298	16326299	+	asmbl_2458	none	STRG.1143.2	1	STRG.1143.1	1
scaffold_4	retained_exon	6947400	6947441	+	asmbl_42762,asmbl_42767,asmbl_42769,asmbl_42770	none	STRG.4536.1,STRG.4536.2,blat.proc3829873.chain_901,blat.proc3829873.chain_903,blat.proc3829873.chain_905	5	STRG.4536.3,blat.proc3829873.chain_899	2
scaffold_6	alternate_exon	14513619	14513941	-	asmbl_48948	none	STRG.8207.1,blat.proc3829891.chain_523	2	STRG.8207.2	1
scaffold_10	retained_intron	3927526	3928121	-	asmbl_3156	none	STRG.12230.2	1	STRG.12230.1,STRG.12230.3,STRG.12230.4,blat.proc3829893.chain_691,blat.proc3829893.chain_693,blat.proc3829893.chain_694,blat.proc3829893.chain_695	7
scaffold_5	retained_intron	8751102	8751176	+	asmbl_44232	none	blat.proc3829873.chain_2315	1	STRG.6201.1,blat.proc3829873.chain_2314	2
scaffold_13	alt_donor	2977429	2977430	-	asmbl_9457	none	STRG.15584.1,blat.proc3829895.chain_363	2	STRG.15584.2	1
scaffold_2	spliced_intron	12727849	12728348	-	asmbl_23493	none	STRG.2326.1,blat.proc3829887.chain_2193	2	blat.proc3829887.chain_2192	1
scaffold_13	ends_in_intron	15374252	15374252	+	asmbl_11482	none	STRG.16571.2	1	STRG.16571.1	1
scaffold_22	retained_exon	4239310	4239788	-	asmbl_29980	none	STRG.24838.3	1	STRG.24838.2,Trinity_GG_30899_c1_g1_i5,blat.proc3829899.chain_1982	3
scaffold_26	spliced_intron	6721964	6722044	+	asmbl_35633	none	STRG.28354.1,blat.proc3829885.chain_1286	2	STRG.28354.2,blat.proc3829885.chain_1285	2
scaffold_21	spliced_intron	3015237	3015391	+	asmbl_28455	none	STRG.23914.1,blat.proc3829883.chain_1067	2	blat.proc3829883.chain_1068	1
scaffold_24	starts_in_intron	447502	447502	+	asmbl_32025	none	Trinity_GG_14559_c0_g1_i3,blat.proc3829883.chain_3260	2	STRG.26319.1,Trinity_GG_14559_c0_g1_i8,blat.proc3829883.chain_3262,blat.proc3829883.chain_3263	4
scaffold_2	skipped_exon	30795	32149	+	asmbl_24078	none	Trinity_GG_850_c0_g1_i2,blat.proc3829871.chain_1526	2	STRG.1493.1,STRG.1493.3,Trinity_GG_850_c0_g1_i1,Trinity_GG_850_c0_g1_i6,blat.proc3829871.chain_1521,blat.proc3829871.chain_1524,blat.proc3829871.chain_1525,blat.proc3829871.chain_1527	8
scaffold_1	retained_exon	12463815	12464403	-	asmbl_728	none	STRG.864.1	1	STRG.864.3,STRG.864.4	2
scaffold_6	alternate_exon	18048042	18048443	-	asmbl_49163	none	STRG.8479.3,blat.proc3829891.chain_772	2	STRG.8479.1,blat.proc3829891.chain_773	2
scaffold_22	starts_in_intron	7119942	7119942	+	asmbl_29449	none	Trinity_GG_13867_c0_g1_i1,blat.proc3829883.chain_2120	2	STRG.25032.1,STRG.25032.2,blat.proc3829883.chain_2115,blat.proc3829883.chain_2116	4
scaffold_21	skipped_exon	1679907	1680931	+	asmbl_28376	none	STRG.23806.3	1	STRG.23806.1,STRG.23806.2,Trinity_GG_13200_c0_g1_i1,blat.proc3829883.chain_967	4
scaffold_2	starts_in_intron	10139265	10139265	+	asmbl_24733	none	STRG.2203.4,Trinity_GG_1250_c0_g1_i2,blat.proc3829871.chain_2324	3	STRG.2203.1,STRG.2203.2,STRG.2203.3,blat.proc3829871.chain_2325,blat.proc3829871.chain_2326,blat.proc3829871.chain_2327	6
scaffold_10	ends_in_intron	12967435	12967435	+	asmbl_4839	none	STRG.12883.1,blat.proc3829877.chain_1425	2	STRG.12883.2,STRG.12883.3,blat.proc3829877.chain_1424	3
scaffold_4	starts_in_intron	17596008	17596008	+	asmbl_43408	none	blat.proc3829873.chain_1643	1	STRG.5349.1,blat.proc3829873.chain_1644	2
scaffold_10	spliced_intron	7684017	7685179	+	asmbl_4579	none	blat.proc3829877.chain_1168	1	STRG.12548.4,blat.proc3829877.chain_1171	2
scaffold_6	alt_donor	3385059	3385060	-	asmbl_48203,asmbl_48204	none	STRG.7343.2,blat.proc3829889.chain_3338	2	STRG.7343.1,blat.proc3829889.chain_3336,blat.proc3829889.chain_3337,blat.proc3829889.chain_3339	4
scaffold_21	ends_in_intron	4093399	4093399	+	asmbl_28524	none	Trinity_GG_13305_c0_g1_i10,blat.proc3829883.chain_1160	2	STRG.23984.2,STRG.23984.3,STRG.23984.4,blat.proc3829883.chain_1158	4
scaffold_20	starts_in_intron	7824366	7824366	-	asmbl_26849	none	blat.proc3829899.chain_344	1	STRG.23319.1,blat.proc3829899.chain_343	2
scaffold_8	retained_intron	4873126	4873930	+	asmbl_51854,asmbl_51855	none	STRG.9943.5,Trinity_GG_5525_c0_g1_i4,blat.proc3829875.chain_2424,blat.proc3829875.chain_2425	4	STRG.9943.3,STRG.9943.4,blat.proc3829875.chain_2420,blat.proc3829875.chain_2421	4
scaffold_13	spliced_intron	5459898	5460075	+	asmbl_10830,asmbl_10831	none	STRG.15828.1,STRG.15828.2,blat.proc3829879.chain_518,blat.proc3829879.chain_520	4	blat.proc3829879.chain_519,blat.proc3829879.chain_521	2
scaffold_17	spliced_intron	13072493	13072772	-	asmbl_19395	none	STRG.20791.3	1	STRG.20791.1,blat.proc3829897.chain_1717	2
scaffold_1	alternate_exon	3504312	3504981	-	asmbl_146,asmbl_152,asmbl_153,asmbl_154	none	STRG.217.1,blat.proc3829887.chain_114,blat.proc3829887.chain_119,blat.proc3829887.chain_121,blat.proc3829887.chain_123	5	blat.proc3829887.chain_116,blat.proc3829887.chain_117,blat.proc3829887.chain_118,blat.proc3829887.chain_120,blat.proc3829887.chain_122,blat.proc3829887.chain_124,blat.proc3829887.chain_125	7
scaffold_21	retained_exon	11671525	11671560	-	asmbl_28163	none	STRG.24616.1	1	STRG.24616.2,blat.proc3829899.chain_1683	2
scaffold_14	spliced_intron	151364	151904	-	asmbl_12758,asmbl_12759,asmbl_12762	none	STRG.16700.2,STRG.16700.3,Trinity_GG_26353_c0_g1_i4,blat.proc3829895.chain_1384,blat.proc3829895.chain_1385,blat.proc3829895.chain_1386	6	Trinity_GG_26353_c0_g1_i1,blat.proc3829895.chain_1387,blat.proc3829895.chain_1388	3
scaffold_21	spliced_intron	11103380	11103507	-	asmbl_28117	none	STRG.24563.2	1	STRG.24563.1,Trinity_GG_30758_c0_g1_i2,blat.proc3829899.chain_1714,blat.proc3829899.chain_1715	4
scaffold_13	ends_in_intron	11563185	11563185	+	asmbl_11261	none	STRG.16291.2,blat.proc3829879.chain_1044	2	STRG.16291.1,blat.proc3829879.chain_1043	2
scaffold_2	retained_intron	10719654	10719730	+	asmbl_24762,asmbl_24763	none	STRG.2240.2,Trinity_GG_1261_c0_g1_i1,blat.proc3829871.chain_2345	3	STRG.2240.1,Trinity_GG_1261_c0_g1_i5,blat.proc3829871.chain_2344	3
scaffold_27	starts_in_intron	1959438	1959438	+	asmbl_36015	none	Trinity_GG_15864_c4_g1_i1	1	blat.proc3829885.chain_1700	1
scaffold_18	retained_exon	6270108	6270145	+	asmbl_20697	none	STRG.21350.2,Trinity_GG_11773_c0_g1_i1,blat.proc3829881.chain_2288	3	STRG.21350.1,blat.proc3829881.chain_2287	2
scaffold_2	starts_in_intron	6760784	6760784	-	asmbl_23256	none	Trinity_GG_18142_c0_g1_i3,blat.proc3829887.chain_1917	2	STRG.2030.1,STRG.2030.2,STRG.2030.3,STRG.2030.4,blat.proc3829887.chain_1918,blat.proc3829887.chain_1919,blat.proc3829887.chain_1920	7
scaffold_15	retained_exon	9667385	9667844	-	asmbl_15415	none	STRG.18467.3	1	STRG.18467.1,STRG.18467.2,blat.proc3829895.chain_3195	3
scaffold_4	ends_in_intron	14104634	14104634	+	asmbl_43185	none	blat.proc3829873.chain_1350	1	STRG.5033.1	1
scaffold_6	retained_exon	16595769	16595889	-	asmbl_49079,asmbl_49080	none	STRG.8376.2,STRG.8376.3,blat.proc3829891.chain_695	3	STRG.8376.1,blat.proc3829891.chain_696	2
scaffold_6	alt_acceptor	5197035	5197036	+	asmbl_46863,asmbl_46865,asmbl_46868,asmbl_46870	none	STRG.7489.2,STRG.7489.4,Trinity_GG_4091_c0_g1_i10,blat.proc3829873.chain_3583,blat.proc3829873.chain_3585,blat.proc3829873.chain_3587	6	STRG.7489.3,blat.proc3829873.chain_3581	2
scaffold_13	retained_intron	2274573	2274820	-	asmbl_9400,asmbl_9404,asmbl_9405	none	STRG.15533.2,blat.proc3829895.chain_310,blat.proc3829895.chain_311,blat.proc3829895.chain_317	4	STRG.15533.1,blat.proc3829895.chain_308,blat.proc3829895.chain_316	3
scaffold_7	alt_donor	12404192	12404193	-	asmbl_50023	none	STRG.9326.2,blat.proc3829891.chain_1497	2	STRG.9326.1,blat.proc3829891.chain_1496	2
scaffold_23	ends_in_intron	3573486	3573486	+	asmbl_30746	none	blat.proc3829883.chain_2596	1	STRG.25757.2,Trinity_GG_14182_c0_g1_i4,blat.proc3829883.chain_2594,blat.proc3829883.chain_2595,blat.proc3829883.chain_2597	5
scaffold_25	starts_in_intron	4538825	4538825	+	asmbl_33508	none	Trinity_GG_15099_c0_g1_i6,blat.proc3829885.chain_412	2	STRG.27374.1,blat.proc3829885.chain_414,blat.proc3829885.chain_415	3
scaffold_25	retained_exon	9848484	9848520	+	asmbl_33837	none	STRG.27776.2	1	STRG.27776.1,blat.proc3829885.chain_797	2
scaffold_4	alternate_exon	16802594	16802674	-	asmbl_41966	none	Trinity_GG_19912_c0_g1_i4,blat.proc3829889.chain_1243	2	blat.proc3829889.chain_1241	1
scaffold_1	alternate_exon	20733469	20733619	-	asmbl_1196	none	STRG.1416.2,blat.proc3829887.chain_1294	2	STRG.1416.1,blat.proc3829887.chain_1295	2
scaffold_6	spliced_intron	3291114	3291248	+	asmbl_46773	none	blat.proc3829873.chain_3454	1	blat.proc3829873.chain_3456	1
scaffold_4	starts_in_intron	6246715	6246715	+	asmbl_42712	none	blat.proc3829873.chain_840	1	STRG.4494.1,STRG.4494.2,STRG.4494.3,blat.proc3829873.chain_839,blat.proc3829873.chain_841	5
scaffold_4	retained_intron	12628852	12629159	-	asmbl_41682	none	STRG.4901.2,blat.proc3829889.chain_895	2	STRG.4901.1,STRG.4901.3,blat.proc3829889.chain_893,blat.proc3829889.chain_896	4
scaffold_3	starts_in_intron	12664924	12664924	-	asmbl_39175	none	blat.proc3829887.chain_3378	1	STRG.3661.1,STRG.3661.2,blat.proc3829887.chain_3379	3
scaffold_1	spliced_intron	18033269	18033608	-	asmbl_1076	none	STRG.1267.1,Trinity_GG_17699_c0_g1_i1,blat.proc3829887.chain_1168	3	Trinity_GG_17699_c0_g1_i2,Trinity_GG_17699_c0_g1_i5,blat.proc3829887.chain_1166,blat.proc3829887.chain_1167	4
scaffold_15	skipped_exon	14633432	14634502	-	asmbl_15750	none	STRG.18867.3,blat.proc3829895.chain_3643	2	STRG.18867.1,STRG.18867.2,STRG.18867.4,blat.proc3829895.chain_3644,blat.proc3829895.chain_3645	5
scaffold_4	skipped_exon	7150686	7151689	+	asmbl_42806,asmbl_42807	none	STRG.4558.1,STRG.4558.5	2	STRG.4558.2,STRG.4558.3,STRG.4558.4,blat.proc3829873.chain_882,blat.proc3829873.chain_883,blat.proc3829873.chain_884	6
scaffold_5	alternate_exon	4694545	4696111	+	asmbl_43953	none	STRG.5917.5	1	STRG.5917.6,STRG.5917.7,blat.proc3829873.chain_2095,blat.proc3829873.chain_2096	4
scaffold_15	alt_acceptor	8619268	8619269	+	asmbl_14285,asmbl_14287	none	STRG.18401.1,blat.proc3829879.chain_3012,blat.proc3829879.chain_3013	3	STRG.18401.2	1
scaffold_13	starts_in_intron	8802563	8802563	-	asmbl_9938	none	Trinity_GG_26094_c0_g1_i5,blat.proc3829895.chain_938	2	STRG.16137.4,blat.proc3829895.chain_940,blat.proc3829895.chain_941,blat.proc3829895.chain_943,blat.proc3829895.chain_944	5
scaffold_6	alt_acceptor	10531381	10531382	+	asmbl_47222	none	STRG.7882.1	1	blat.proc3829875.chain_270	1
scaffold_14	starts_in_intron	15473890	15473890	+	asmbl_12591	none	Trinity_GG_9766_c0_g1_i1,blat.proc3829879.chain_2438	2	STRG.17762.1,blat.proc3829879.chain_2439	2
scaffold_24	ends_in_intron	5947820	5947820	+	asmbl_32283	none	blat.proc3829883.chain_3535	1	STRG.26645.1,blat.proc3829883.chain_3537,blat.proc3829883.chain_3539,blat.proc3829883.chain_3542,blat.proc3829883.chain_3543,blat.proc3829883.chain_3544,blat.proc3829883.chain_3545,blat.proc3829883.chain_3547,blat.proc3829883.chain_3548,blat.proc3829883.chain_3549	10
scaffold_25	alt_donor	3550702	3550703	-	asmbl_34118	none	STRG.27282.2	1	STRG.27282.1,blat.proc3829901.chain_586	2
scaffold_22	alternate_exon	10321876	10322019	+	asmbl_29644	none	STRG.25367.1	1	STRG.25367.3	1
scaffold_20	starts_in_intron	6188696	6188696	-	asmbl_26742	none	blat.proc3829899.chain_218	1	STRG.23204.1,blat.proc3829899.chain_219	2
scaffold_14	spliced_intron	3165584	3165934	+	asmbl_11888	none	blat.proc3829879.chain_1641	1	STRG.16893.1,STRG.16893.2,STRG.16893.4,blat.proc3829879.chain_1642	4
scaffold_18	alternate_exon	3223543	3223601	-	asmbl_19793	none	STRG.21154.1	1	STRG.21154.2,blat.proc3829897.chain_1964,blat.proc3829897.chain_1965	3
scaffold_6	retained_intron	13167852	13167977	-	asmbl_48823	none	STRG.8067.2,Trinity_GG_21606_c0_g1_i2,blat.proc3829891.chain_380	3	STRG.8067.1,blat.proc3829891.chain_381,blat.proc3829891.chain_383	3
scaffold_1	retained_intron	17724961	17725166	+	asmbl_2513	none	Trinity_GG_733_c0_g1_i1,blat.proc3829871.chain_1301	2	STRG.1239.1,STRG.1239.2,Trinity_GG_733_c0_g1_i2,Trinity_GG_733_c0_g1_i3,blat.proc3829871.chain_1302,blat.proc3829871.chain_1303	6
scaffold_12	alt_acceptor	12843020	12843021	+	asmbl_8996	none	STRG.15165.2,blat.proc3829877.chain_3632	2	STRG.15165.1,blat.proc3829877.chain_3633	2
scaffold_7	alternate_exon	17990417	17990844	+	asmbl_51395	none	STRG.9629.1	1	STRG.9629.3	1
scaffold_14	alternate_exon	2487324	2487390	+	asmbl_11838	none	Trinity_GG_9277_c0_g1_i2	1	STRG.16849.1,Trinity_GG_9277_c0_g1_i1	2
scaffold_7	retained_intron	13891449	13891712	+	asmbl_51266	none	STRG.9476.3	1	STRG.9476.1,STRG.9476.2,Trinity_GG_5267_c0_g1_i1,blat.proc3829875.chain_1942	4
scaffold_14	retained_intron	7215812	7216426	+	asmbl_12113	none	Trinity_GG_9432_c0_g1_i2,blat.proc3829879.chain_1871	2	STRG.17138.1,Trinity_GG_9432_c0_g1_i1,blat.proc3829879.chain_1870,blat.proc3829879.chain_1872	4
scaffold_14	alternate_exon	13221146	13221285	+	asmbl_12447	none	blat.proc3829879.chain_2204	1	STRG.17600.5	1
scaffold_17	retained_intron	4186382	4186772	-	asmbl_18887	none	STRG.20157.2,blat.proc3829897.chain_1125	2	STRG.20157.3	1
scaffold_14	retained_intron	6645283	6645363	-	asmbl_13124	none	STRG.17095.2	1	STRG.17095.1,STRG.17095.3	2
scaffold_11	retained_intron	2061501	2061594	+	asmbl_5310,asmbl_5311	none	STRG.13352.2,Trinity_GG_7338_c0_g1_i6,blat.proc3829877.chain_1843,blat.proc3829877.chain_1844,blat.proc3829877.chain_1846	5	STRG.13352.3	1
scaffold_24	starts_in_intron	4293515	4293515	+	asmbl_32194	none	Trinity_GG_14698_c2_g1_i1,blat.proc3829883.chain_3476	2	STRG.26571.1,blat.proc3829883.chain_3473,blat.proc3829883.chain_3474	3
scaffold_4	retained_intron	3528251	3528359	-	asmbl_41192	none	STRG.4277.1	1	STRG.4277.3	1
scaffold_6	retained_intron	8171724	8171933	-	asmbl_48474,asmbl_48480	none	blat.proc3829889.chain_3724,blat.proc3829889.chain_3725	2	STRG.7691.1,STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3715,blat.proc3829889.chain_3716	5
scaffold_19	alternate_exon	7583240	7583377	+	asmbl_22283	none	blat.proc3829881.chain_3174	1	STRG.22230.1,STRG.22230.2,Trinity_GG_12292_c1_g1_i2,blat.proc3829881.chain_3168,blat.proc3829881.chain_3171,blat.proc3829881.chain_3173,blat.proc3829881.chain_3175	7
scaffold_17	retained_intron	1512243	1512407	-	asmbl_18766	none	blat.proc3829897.chain_951	1	STRG.19976.1,blat.proc3829897.chain_952	2
scaffold_13	skipped_exon	3613014	3614593	-	asmbl_9518	none	STRG.15665.2,blat.proc3829895.chain_341	2	blat.proc3829895.chain_342	1
scaffold_6	retained_exon	17522228	17522322	+	asmbl_47700,asmbl_47701	none	STRG.8451.1,STRG.8451.4,blat.proc3829875.chain_843	3	STRG.8451.3	1
scaffold_1	ends_in_intron	6574871	6574871	-	asmbl_383	none	blat.proc3829887.chain_264	1	STRG.448.1,STRG.448.2,blat.proc3829887.chain_262,blat.proc3829887.chain_263	4
scaffold_14	retained_exon	15585857	15585898	+	asmbl_12612	none	STRG.17785.4	1	STRG.17785.1,STRG.17785.2	2
scaffold_10	alt_donor	3283802	3283803	-	asmbl_3095	none	STRG.12141.1,blat.proc3829893.chain_563	2	STRG.12141.2	1
scaffold_10	alternate_exon	11970328	11971461	+	asmbl_4792	none	blat.proc3829877.chain_1319	1	STRG.12831.3	1
scaffold_7	ends_in_intron	8264053	8264053	+	asmbl_50861	none	blat.proc3829875.chain_1422	1	STRG.9051.1,blat.proc3829875.chain_1419	2
scaffold_20	retained_intron	6280984	6281051	+	asmbl_25809	none	STRG.23212.1	1	STRG.23212.2	1
scaffold_10	ends_in_intron	1445989	1445989	-	asmbl_2973	none	blat.proc3829893.chain_451	1	STRG.12010.1,Trinity_GG_23689_c0_g2_i2,blat.proc3829893.chain_452,blat.proc3829893.chain_453	4
scaffold_23	spliced_intron	5339139	5340317	-	asmbl_31626,asmbl_31627	none	STRG.25890.1,Trinity_GG_31478_c0_g1_i4,Trinity_GG_31478_c0_g1_i6,blat.proc3829899.chain_2980,blat.proc3829899.chain_2981	5	STRG.25890.2,Trinity_GG_31478_c0_g1_i2,Trinity_GG_31478_c0_g1_i3,blat.proc3829899.chain_2977,blat.proc3829899.chain_2978	5
scaffold_2	starts_in_intron	18409650	18409650	-	asmbl_23797	none	STRG.2724.2	1	STRG.2724.1,blat.proc3829887.chain_2500	2
scaffold_2	ends_in_intron	1820985	1820985	-	asmbl_22898	none	Trinity_GG_17906_c0_g1_i1,blat.proc3829887.chain_1480	2	STRG.1642.1	1
scaffold_1	alternate_exon	5186758	5186887	-	asmbl_241	none	STRG.320.2,Trinity_GG_17187_c0_g1_i3,blat.proc3829887.chain_205	3	STRG.320.1,Trinity_GG_17187_c0_g1_i2,blat.proc3829887.chain_204	3
scaffold_6	spliced_intron	14252463	14253506	-	asmbl_48933	none	blat.proc3829891.chain_445	1	STRG.8181.3,Trinity_GG_21638_c0_g1_i2,blat.proc3829891.chain_444	3
scaffold_17	retained_intron	5710589	5710711	-	asmbl_18988,asmbl_18989,asmbl_18990,asmbl_18991	none	STRG.20262.2,blat.proc3829897.chain_1234,blat.proc3829897.chain_1235,blat.proc3829897.chain_1236,blat.proc3829897.chain_1237	5	STRG.20262.1	1
scaffold_4	spliced_intron	1618801	1618830	+	asmbl_42442	none	STRG.4194.2	1	STRG.4194.1	1
scaffold_14	skipped_exon	15584170	15584986	+	asmbl_12613	none	STRG.17785.1	1	STRG.17785.2	1
scaffold_2	alt_acceptor	33474	33475	+	asmbl_24082,asmbl_24084	none	STRG.1493.5,blat.proc3829871.chain_1525	2	STRG.1493.1,STRG.1493.3,STRG.1493.4,Trinity_GG_850_c0_g1_i3,blat.proc3829871.chain_1522,blat.proc3829871.chain_1527	6
scaffold_18	ends_in_intron	7684816	7684816	+	asmbl_20803	none	blat.proc3829881.chain_2442	1	STRG.21464.1,STRG.21464.2,STRG.21464.3,blat.proc3829881.chain_2435,blat.proc3829881.chain_2436,blat.proc3829881.chain_2437,blat.proc3829881.chain_2440	7
scaffold_8	starts_in_intron	5556340	5556340	-	asmbl_52829	none	blat.proc3829891.chain_2061	1	STRG.9977.1,blat.proc3829891.chain_2058,blat.proc3829891.chain_2060,blat.proc3829891.chain_2062	4
scaffold_7	starts_in_intron	1235503	1235503	+	asmbl_50472,asmbl_50473	none	Trinity_GG_4740_c0_g1_i10,Trinity_GG_4740_c0_g1_i20,blat.proc3829875.chain_1050,blat.proc3829875.chain_1053	4	STRG.8627.2,STRG.8627.3,STRG.8627.5,STRG.8627.7,STRG.8627.8,STRG.8627.9,Trinity_GG_4740_c0_g1_i16,blat.proc3829875.chain_1042,blat.proc3829875.chain_1043,blat.proc3829875.chain_1049	10
scaffold_13	alt_acceptor	7081814	7081815	-	asmbl_9806	none	STRG.15989.1	1	STRG.15989.2,Trinity_GG_26011_c0_g1_i2,blat.proc3829895.chain_763	3
scaffold_2	spliced_intron	9790090	9790374	+	asmbl_24720,asmbl_24723,asmbl_24725,asmbl_24726	none	STRG.2185.1,blat.proc3829871.chain_2217,blat.proc3829871.chain_2219,blat.proc3829871.chain_2221,blat.proc3829871.chain_2222	5	blat.proc3829871.chain_2216,blat.proc3829871.chain_2220	2
scaffold_56	spliced_intron	4308	4486	-	asmbl_46522	none	STRG.30050.2	1	STRG.30050.1,blat.proc3829901.chain_3158	2
scaffold_15	retained_intron	15188738	15189128	+	asmbl_14674,asmbl_14680,asmbl_14686,asmbl_14689,asmbl_14691	none	STRG.18906.3,blat.proc3829879.chain_3472,blat.proc3829879.chain_3478,blat.proc3829879.chain_3480,blat.proc3829879.chain_3485,blat.proc3829879.chain_3486	6	blat.proc3829879.chain_3471,blat.proc3829879.chain_3475,blat.proc3829879.chain_3476,blat.proc3829879.chain_3481	4
scaffold_1	alt_acceptor	3165473	3165474	+	asmbl_1567,asmbl_1568	none	STRG.194.1,STRG.194.3,Trinity_GG_88_c0_g1_i3,blat.proc3829871.chain_152	4	STRG.194.2,Trinity_GG_88_c0_g1_i2,blat.proc3829871.chain_153	3
scaffold_5	spliced_intron	10251374	10251506	-	asmbl_45713,asmbl_45716	none	STRG.6319.1,blat.proc3829889.chain_2332,blat.proc3829889.chain_2333	3	STRG.6319.2,blat.proc3829889.chain_2330,blat.proc3829889.chain_2331	3
scaffold_12	starts_in_intron	4419304	4419304	+	asmbl_8572	none	Trinity_GG_8046_c0_g1_i1,blat.proc3829877.chain_3058	2	STRG.14611.1,Trinity_GG_8046_c0_g1_i2,blat.proc3829877.chain_3057,blat.proc3829877.chain_3059	4
scaffold_11	starts_in_intron	5493066	5493066	-	asmbl_6639	none	blat.proc3829893.chain_2054	1	STRG.13604.1,Trinity_GG_24622_c0_g1_i3,blat.proc3829893.chain_2053,blat.proc3829893.chain_2056	4
scaffold_21	skipped_exon	6637284	6639368	+	asmbl_28702	none	STRG.24176.2	1	STRG.24176.1,blat.proc3829883.chain_1292	2
scaffold_14	retained_exon	870397	870450	+	asmbl_11748,asmbl_11749,asmbl_11750	none	STRG.16747.1,STRG.16747.2,blat.proc3829879.chain_1427	3	STRG.16747.3	1
scaffold_16	retained_intron	5395173	5395337	+	asmbl_17006	none	Trinity_GG_10554_c0_g1_i4,blat.proc3829881.chain_134	2	STRG.19275.1,STRG.19275.2,Trinity_GG_10554_c0_g1_i2,blat.proc3829881.chain_135,blat.proc3829881.chain_136,blat.proc3829881.chain_137	6
scaffold_5	alt_acceptor	16939454	16939455	-	asmbl_46163	none	blat.proc3829889.chain_2909	1	STRG.6865.1,blat.proc3829889.chain_2910,blat.proc3829889.chain_2911	3
scaffold_13	alt_donor	3699681	3699682	+	asmbl_10705	none	STRG.15670.2	1	STRG.15670.1,Trinity_GG_8604_c0_g1_i2,blat.proc3829879.chain_352	3
scaffold_1	alt_acceptor	7290420	7290421	+	asmbl_1891	none	STRG.526.2,Trinity_GG_300_c0_g1_i4,blat.proc3829871.chain_530	3	STRG.526.3	1
scaffold_7	starts_in_intron	13219760	13219760	+	asmbl_51208	none	Trinity_GG_5240_c0_g1_i4	1	STRG.9423.1	1
scaffold_18	retained_intron	1382455	1382684	-	asmbl_19648	none	STRG.21013.2,blat.proc3829897.chain_1922	2	STRG.21013.1,blat.proc3829897.chain_1921	2
scaffold_6	spliced_intron	3779018	3779105	+	asmbl_46797,asmbl_46799	none	STRG.7368.1,STRG.7368.4,blat.proc3829873.chain_3516,blat.proc3829873.chain_3519	4	STRG.7368.2,blat.proc3829873.chain_3517	2
scaffold_11	alternate_exon	7047608	7047688	+	asmbl_5610,asmbl_5612,asmbl_5613,asmbl_5615	none	STRG.13722.1,STRG.13722.2,Trinity_GG_7553_c0_g1_i3,Trinity_GG_7553_c0_g1_i7,blat.proc3829877.chain_2194,blat.proc3829877.chain_2196	6	STRG.13722.3,Trinity_GG_7553_c0_g1_i1,Trinity_GG_7553_c0_g1_i5,Trinity_GG_7553_c0_g1_i8,blat.proc3829877.chain_2193,blat.proc3829877.chain_2195,blat.proc3829877.chain_2197	7
scaffold_6	retained_intron	5198065	5198348	+	asmbl_46859,asmbl_46868	none	STRG.7489.4,Trinity_GG_4091_c0_g1_i6,blat.proc3829873.chain_3582	3	STRG.7489.2,STRG.7489.3,STRG.7489.5,Trinity_GG_4091_c0_g1_i10,blat.proc3829873.chain_3581,blat.proc3829873.chain_3583,blat.proc3829873.chain_3585,blat.proc3829873.chain_3587	8
scaffold_19	starts_in_intron	4793125	4793125	-	asmbl_21336	none	STRG.22043.3,Trinity_GG_29309_c0_g1_i3,blat.proc3829897.chain_2801	3	STRG.22043.2,Trinity_GG_29309_c0_g1_i1,blat.proc3829897.chain_2803	3
scaffold_16	retained_intron	5754391	5755434	+	asmbl_17014,asmbl_17016	none	STRG.19307.2,Trinity_GG_10568_c0_g1_i1,Trinity_GG_10568_c0_g1_i5,blat.proc3829881.chain_157,blat.proc3829881.chain_158	5	STRG.19307.1,blat.proc3829881.chain_159,blat.proc3829881.chain_160	3
scaffold_14	retained_intron	6645463	6645615	-	asmbl_13124	none	STRG.17095.2	1	STRG.17095.1,STRG.17095.3	2
scaffold_6	alternate_exon	3793845	3794011	+	asmbl_46803	none	STRG.7371.2,blat.proc3829873.chain_3489	2	STRG.7371.1,blat.proc3829873.chain_3488	2
scaffold_1	alt_donor	16498282	16498283	-	asmbl_998	none	STRG.1153.2,blat.proc3829887.chain_1044	2	STRG.1153.1,blat.proc3829887.chain_1045	2
scaffold_20	ends_in_intron	80022	80022	+	asmbl_25494	none	Trinity_GG_12535_c1_g1_i2	1	STRG.22681.1	1
scaffold_12	alt_donor	7335661	7335662	+	asmbl_8707	none	STRG.14799.3,blat.proc3829877.chain_3296	2	STRG.14799.1,STRG.14799.2,blat.proc3829877.chain_3297	3
scaffold_28	spliced_intron	5391382	5391483	+	asmbl_38279,asmbl_38282,asmbl_38284	none	STRG.29664.1,STRG.29664.2,Trinity_GG_16450_c0_g1_i2,Trinity_GG_16450_c0_g1_i9,blat.proc3829885.chain_2784,blat.proc3829885.chain_2787	6	STRG.29664.4	1
scaffold_1	alternate_exon	5963158	5963261	+	asmbl_1795	none	STRG.396.1,blat.proc3829871.chain_454	2	STRG.396.2,STRG.396.3,Trinity_GG_257_c0_g1_i4,blat.proc3829871.chain_456	4
scaffold_20	alt_donor	11287208	11287209	+	asmbl_26179,asmbl_26180	none	STRG.23619.1,Trinity_GG_13069_c0_g1_i2,blat.proc3829883.chain_752,blat.proc3829883.chain_753	4	STRG.23619.2,STRG.23619.3	2
scaffold_14	alt_acceptor	8306302	8306303	+	asmbl_12201	none	STRG.17241.2	1	STRG.17241.1,blat.proc3829879.chain_1920,blat.proc3829879.chain_1921	3
scaffold_2	alternate_exon	4556374	4557369	-	asmbl_23110	none	STRG.1882.1,Trinity_GG_18054_c0_g1_i1,blat.proc3829887.chain_1716	3	STRG.1882.2	1
scaffold_25	starts_in_intron	2687225	2687225	+	asmbl_33401	none	STRG.27213.2	1	STRG.27213.1,blat.proc3829885.chain_261	2
scaffold_5	retained_intron	5061484	5061828	+	asmbl_44005,asmbl_44007	none	Trinity_GG_3232_c0_g1_i2,Trinity_GG_3232_c0_g1_i3,blat.proc3829873.chain_2050,blat.proc3829873.chain_2051	4	STRG.5955.1,blat.proc3829873.chain_2052	2
scaffold_8	skipped_exon	13132405	13133848	-	asmbl_53274	none	STRG.10481.1	1	blat.proc3829891.chain_2642	1
scaffold_16	retained_intron	8086575	8086765	-	asmbl_16407	none	Trinity_GG_27908_c0_g3_i1,blat.proc3829897.chain_450	2	STRG.19441.1,blat.proc3829897.chain_444,blat.proc3829897.chain_447,blat.proc3829897.chain_449	4
scaffold_7	retained_exon	5424137	5424184	-	asmbl_49700	none	STRG.8866.2	1	STRG.8866.1	1
scaffold_16	retained_intron	10449967	10450337	+	asmbl_17337	none	Trinity_GG_10708_c0_g1_i1,blat.proc3829881.chain_425	2	STRG.19602.1,STRG.19602.2,STRG.19602.3,STRG.19602.4,STRG.19602.5,Trinity_GG_10708_c0_g1_i3,blat.proc3829881.chain_423,blat.proc3829881.chain_424,blat.proc3829881.chain_426	9
scaffold_14	alt_donor	10473665	10473666	+	asmbl_12301	none	STRG.17381.1	1	STRG.17381.2	1
scaffold_67	spliced_intron	6653	6754	-	asmbl_49450	none	STRG.30081.2	1	STRG.30081.1,blat.proc3829901.chain_3180	2
scaffold_11	alternate_exon	14128748	14128802	-	asmbl_7134,asmbl_7135	none	STRG.14222.1,blat.proc3829893.chain_2613	2	blat.proc3829893.chain_2611	1
scaffold_5	spliced_intron	11630266	11631086	-	asmbl_45799	none	blat.proc3829889.chain_2524	1	blat.proc3829889.chain_2526,blat.proc3829889.chain_2528	2
scaffold_4	alt_acceptor	16316023	16316024	+	asmbl_43297,asmbl_43298	none	STRG.5205.4,Trinity_GG_2902_c0_g1_i6,blat.proc3829873.chain_1511,blat.proc3829873.chain_1514	4	STRG.5205.1,STRG.5205.3,blat.proc3829873.chain_1510	3
scaffold_24	alt_donor	3655845	3655846	+	asmbl_32164,asmbl_32165,asmbl_32168	none	STRG.26528.1,STRG.26528.4,Trinity_GG_14654_c0_g1_i3,blat.proc3829883.chain_3404,blat.proc3829883.chain_3406,blat.proc3829883.chain_3408	6	STRG.26528.2,STRG.26528.3,STRG.26528.6,Trinity_GG_14654_c0_g1_i10,Trinity_GG_14654_c0_g1_i7,blat.proc3829883.chain_3402,blat.proc3829883.chain_3403,blat.proc3829883.chain_3405,blat.proc3829883.chain_3407	9
scaffold_18	spliced_intron	7686295	7686459	+	asmbl_20804,asmbl_20806,asmbl_20807,asmbl_20808,asmbl_20809,asmbl_20810	none	STRG.21464.1,STRG.21464.2,STRG.21464.3,Trinity_GG_11863_c0_g1_i8,blat.proc3829881.chain_2436,blat.proc3829881.chain_2437,blat.proc3829881.chain_2439,blat.proc3829881.chain_2440	8	STRG.21464.4,Trinity_GG_11863_c0_g1_i9,blat.proc3829881.chain_2433,blat.proc3829881.chain_2434,blat.proc3829881.chain_2435	5
scaffold_6	alt_donor	10400187	10400188	-	asmbl_48638	none	STRG.7875.2,blat.proc3829891.chain_144	2	STRG.7875.1,blat.proc3829891.chain_143	2
scaffold_6	ends_in_intron	16888182	16888182	-	asmbl_49113	none	Trinity_GG_21814_c0_g1_i1,blat.proc3829891.chain_739	2	STRG.8402.1,STRG.8402.2,Trinity_GG_21814_c0_g1_i2,Trinity_GG_21814_c0_g1_i3,Trinity_GG_21814_c0_g1_i5,blat.proc3829891.chain_737,blat.proc3829891.chain_738,blat.proc3829891.chain_740	8
scaffold_7	alternate_exon	2738642	2742613	+	asmbl_50545	none	STRG.8693.1,blat.proc3829875.chain_1120	2	STRG.8693.3	1
scaffold_17	alternate_exon	7121682	7121855	-	asmbl_19089	none	STRG.20366.1	1	STRG.20366.2	1
scaffold_20	spliced_intron	7469286	7469829	-	asmbl_26825,asmbl_26827,asmbl_26829	none	STRG.23308.1,blat.proc3829899.chain_389,blat.proc3829899.chain_394,blat.proc3829899.chain_399	4	blat.proc3829899.chain_391,blat.proc3829899.chain_396,blat.proc3829899.chain_401	3
scaffold_9	retained_intron	12831578	12831611	+	asmbl_54452	none	STRG.11596.2	1	STRG.11596.3	1
scaffold_3	retained_exon	1840093	1840248	+	asmbl_39846	none	STRG.3006.1,blat.proc3829871.chain_3188	2	STRG.3006.2	1
scaffold_11	retained_intron	3698054	3698259	+	asmbl_5415	none	Trinity_GG_7399_c0_g1_i1,blat.proc3829877.chain_1951	2	STRG.13477.1,blat.proc3829877.chain_1950	2
scaffold_18	ends_in_intron	5788100	5788100	+	asmbl_20637,asmbl_20638,asmbl_20639	none	blat.proc3829881.chain_2252,blat.proc3829881.chain_2253,blat.proc3829881.chain_2255	3	STRG.21318.2,blat.proc3829881.chain_2250	2
scaffold_6	spliced_intron	8643223	8643354	+	asmbl_47103,asmbl_47106	none	STRG.7737.1,STRG.7737.2,blat.proc3829875.chain_105	3	blat.proc3829875.chain_104	1
scaffold_6	alternate_exon	7940278	7940565	-	asmbl_48445,asmbl_48446,asmbl_48447,asmbl_48448,asmbl_48450,asmbl_48452	none	STRG.7666.1,STRG.7666.3,blat.proc3829889.chain_3701,blat.proc3829889.chain_3702,blat.proc3829889.chain_3703,blat.proc3829889.chain_3704,blat.proc3829889.chain_3706	7	STRG.7666.4	1
scaffold_26	alternate_exon	5861387	5862690	+	asmbl_35575	none	STRG.28276.1,blat.proc3829885.chain_1301	2	STRG.28276.2	1
scaffold_6	spliced_intron	8581465	8581566	+	asmbl_47091	none	STRG.7732.4	1	STRG.7732.2,blat.proc3829875.chain_110	2
scaffold_21	retained_intron	8129161	8131427	-	asmbl_27909	none	STRG.24334.1,Trinity_GG_30568_c0_g1_i8,Trinity_GG_30568_c2_g1_i1,Trinity_GG_30568_c4_g1_i1,blat.proc3829899.chain_1386,blat.proc3829899.chain_1390,blat.proc3829899.chain_1392	7	STRG.24334.5,blat.proc3829899.chain_1383,blat.proc3829899.chain_1385,blat.proc3829899.chain_1387	4
scaffold_3026	retained_intron	358	614	+	asmbl_40860	none	STRG.30791.2,blat.proc3829885.chain_3636	2	STRG.30791.1	1
scaffold_322	retained_intron	6549	6737	-	asmbl_40913	none	Trinity_GG_33980_c0_g1_i6,Trinity_GG_34090_c0_g1_i4,blat.proc3829901.chain_3329	3	STRG.30256.1	1
scaffold_9	alt_donor	66929	66930	+	asmbl_53727,asmbl_53728	none	STRG.10758.2,blat.proc3829875.chain_3247	2	STRG.10758.1	1
scaffold_18	alt_acceptor	1391553	1391554	-	asmbl_19651	none	STRG.21014.2	1	STRG.21014.1,blat.proc3829897.chain_1932,blat.proc3829897.chain_1933,blat.proc3829897.chain_1935,blat.proc3829897.chain_1937	5
scaffold_11	spliced_intron	854023	854153	+	asmbl_5266,asmbl_5269	none	STRG.13271.1,blat.proc3829877.chain_1716,blat.proc3829877.chain_1718	3	Trinity_GG_7265_c0_g1_i1,blat.proc3829877.chain_1715	2
scaffold_14	alt_acceptor	7508157	7508158	-	asmbl_13203,asmbl_13204,asmbl_13205	none	STRG.17180.1,STRG.17180.2,blat.proc3829895.chain_1866,blat.proc3829895.chain_1869,blat.proc3829895.chain_1870	5	blat.proc3829895.chain_1868	1
scaffold_21	starts_in_intron	233793	233793	-	asmbl_27310	none	Trinity_GG_30226_c0_g1_i1,blat.proc3829899.chain_759	2	STRG.23713.1,STRG.23713.2,Trinity_GG_30226_c0_g1_i2,Trinity_GG_30226_c0_g1_i3,blat.proc3829899.chain_760,blat.proc3829899.chain_761	6
scaffold_2	spliced_intron	951147	953178	+	asmbl_24187,asmbl_24188,asmbl_24189,asmbl_24191	none	STRG.1574.1,STRG.1574.2,STRG.1574.3,blat.proc3829871.chain_1647	4	STRG.1574.4,Trinity_GG_901_c0_g2_i1,Trinity_GG_901_c0_g2_i2,blat.proc3829871.chain_1652,blat.proc3829871.chain_1653	5
scaffold_28	retained_intron	105779	105881	-	asmbl_37216	none	blat.proc3829901.chain_2343	1	STRG.29229.1,STRG.29229.2,blat.proc3829901.chain_2341,blat.proc3829901.chain_2342	4
scaffold_25	alt_acceptor	7322302	7322303	-	asmbl_34370	none	STRG.27566.2	1	STRG.27566.1,STRG.27566.4	2
scaffold_3	retained_intron	6200511	6200607	-	asmbl_38869	none	STRG.3259.3,Trinity_GG_18786_c0_g1_i2,blat.proc3829887.chain_3000	3	STRG.3259.1,STRG.3259.2,Trinity_GG_18786_c0_g1_i1,blat.proc3829887.chain_3001	4
scaffold_14	alt_donor	12628984	12628985	-	asmbl_13564,asmbl_13565,asmbl_13567,asmbl_13568,asmbl_13569,asmbl_13570,asmbl_13571,asmbl_13572,asmbl_13573	none	STRG.17566.1,STRG.17566.2,STRG.17566.3,blat.proc3829895.chain_2326,blat.proc3829895.chain_2327,blat.proc3829895.chain_2328,blat.proc3829895.chain_2329,blat.proc3829895.chain_2330,blat.proc3829895.chain_2331,blat.proc3829895.chain_2332,blat.proc3829895.chain_2333	11	Trinity_GG_26902_c0_g1_i2,blat.proc3829895.chain_2325	2
scaffold_21	starts_in_intron	8920639	8920639	+	asmbl_28848	none	Trinity_GG_13512_c0_g1_i2,blat.proc3829883.chain_1512	2	STRG.24399.1,STRG.24399.2,blat.proc3829883.chain_1511	3
scaffold_6	alt_donor	4713262	4713263	+	asmbl_46841	none	STRG.7454.2,Trinity_GG_4062_c0_g1_i2,blat.proc3829873.chain_3537	3	STRG.7454.1,Trinity_GG_4062_c0_g1_i1,blat.proc3829873.chain_3538	3
scaffold_24	starts_in_intron	5937486	5937486	+	asmbl_32268	none	Trinity_GG_14738_c2_g1_i1,blat.proc3829883.chain_3552	2	STRG.26645.1,blat.proc3829883.chain_3535,blat.proc3829883.chain_3537,blat.proc3829883.chain_3542,blat.proc3829883.chain_3543,blat.proc3829883.chain_3545,blat.proc3829883.chain_3547,blat.proc3829883.chain_3548	8
scaffold_6	retained_exon	14117086	14117196	+	asmbl_47518	none	STRG.8168.1	1	STRG.8168.2	1
scaffold_9	ends_in_intron	12852349	12852349	+	asmbl_54457	none	blat.proc3829877.chain_397	1	Trinity_GG_6495_c0_g1_i1,blat.proc3829877.chain_396	2
scaffold_11	spliced_intron	17376092	17376187	+	asmbl_6202,asmbl_6205	none	STRG.14392.1,STRG.14392.2,blat.proc3829877.chain_2826	3	Trinity_GG_7898_c0_g1_i3,blat.proc3829877.chain_2827	2
scaffold_17	ends_in_intron	13464516	13464516	+	asmbl_18450	none	blat.proc3829881.chain_1663	1	STRG.20812.1,blat.proc3829881.chain_1662	2
scaffold_19	spliced_intron	7588347	7588430	-	asmbl_21453,asmbl_21454,asmbl_21456	none	STRG.22232.1,STRG.22232.2,blat.proc3829897.chain_2931	3	blat.proc3829897.chain_2932	1
scaffold_16	skipped_exon	8892270	8894669	+	asmbl_17247	none	STRG.19494.2	1	STRG.19494.1,Trinity_GG_10664_c0_g1_i1,blat.proc3829881.chain_334	3
scaffold_20	alternate_exon	6665311	6665547	-	asmbl_26766	none	STRG.23229.1,blat.proc3829899.chain_278	2	STRG.23229.2	1
scaffold_21	alt_donor	3120521	3120522	+	asmbl_28468	none	STRG.23929.3,Trinity_GG_13266_c0_g1_i1,blat.proc3829883.chain_1099	3	STRG.23929.1,STRG.23929.4,blat.proc3829883.chain_1098,blat.proc3829883.chain_1100	4
scaffold_14	alt_acceptor	8251791	8251792	-	asmbl_13253	none	STRG.17231.2,Trinity_GG_26667_c0_g1_i1,blat.proc3829895.chain_1922	3	STRG.17231.1	1
scaffold_5	spliced_intron	11434446	11434524	-	asmbl_45791	none	STRG.6396.1,blat.proc3829889.chain_2490	2	blat.proc3829889.chain_2489	1
scaffold_16	spliced_intron	14510973	14511105	-	asmbl_16628,asmbl_16629,asmbl_16630,asmbl_16631	none	STRG.19819.1,blat.proc3829897.chain_770,blat.proc3829897.chain_771,blat.proc3829897.chain_772,blat.proc3829897.chain_774	5	Trinity_GG_28131_c0_g1_i2,blat.proc3829897.chain_773	2
scaffold_14	spliced_intron	11572188	11574063	-	asmbl_13481,asmbl_13485	none	STRG.17490.5,blat.proc3829895.chain_2173,blat.proc3829895.chain_2180	3	STRG.17490.2,Trinity_GG_26806_c0_g1_i8	2
scaffold_28	alt_donor	4693976	4693977	+	asmbl_38236	none	STRG.29616.1,blat.proc3829885.chain_2743	2	STRG.29616.2	1
scaffold_8	retained_intron	9467898	9467974	-	asmbl_53031	none	Trinity_GG_22724_c0_g1_i12,blat.proc3829891.chain_2401	2	STRG.10197.1,blat.proc3829891.chain_2400,blat.proc3829891.chain_2403,blat.proc3829891.chain_2405,blat.proc3829891.chain_2406,blat.proc3829891.chain_2407,blat.proc3829891.chain_2408	7
scaffold_15	starts_in_intron	1594490	1594490	+	asmbl_13962	none	Trinity_GG_9885_c0_g1_i3,blat.proc3829879.chain_2640	2	STRG.17950.1,blat.proc3829879.chain_2641,blat.proc3829879.chain_2642	3
scaffold_14	spliced_intron	1590384	1590520	-	asmbl_12878	none	STRG.16786.5	1	blat.proc3829895.chain_1441	1
scaffold_2	skipped_exon	16403257	16403585	+	asmbl_25173	none	blat.proc3829871.chain_2793	1	STRG.2580.1,blat.proc3829871.chain_2790	2
scaffold_11	starts_in_intron	14532000	14532000	+	asmbl_6071,asmbl_6072	none	blat.proc3829877.chain_2743,blat.proc3829877.chain_2748	2	STRG.14239.1,STRG.14239.2,STRG.14239.3,STRG.14239.4,Trinity_GG_7860_c0_g1_i2,Trinity_GG_7860_c0_g1_i6,Trinity_GG_7860_c0_g1_i7,blat.proc3829877.chain_2744,blat.proc3829877.chain_2745,blat.proc3829877.chain_2746,blat.proc3829877.chain_2747	11
scaffold_2	alternate_exon	928972	933263	+	asmbl_24171,asmbl_24175,asmbl_24176,asmbl_24177	none	STRG.1569.1,STRG.1569.3,STRG.1569.4,blat.proc3829871.chain_1537,blat.proc3829871.chain_1542	5	blat.proc3829871.chain_1534,blat.proc3829871.chain_1535	2
scaffold_17	alt_donor	8318341	8318342	+	asmbl_18098,asmbl_18099,asmbl_18100	none	blat.proc3829881.chain_1250,blat.proc3829881.chain_1251,blat.proc3829881.chain_1253	3	STRG.20443.1,STRG.20443.2,STRG.20443.3,Trinity_GG_11211_c0_g1_i1,blat.proc3829881.chain_1252	5
scaffold_15	starts_in_intron	10142704	10142704	+	asmbl_14388	none	blat.proc3829879.chain_3140	1	STRG.18508.1	1
scaffold_8	retained_intron	17815077	17815245	+	asmbl_52502,asmbl_52504	none	blat.proc3829875.chain_3119,blat.proc3829875.chain_3124	2	STRG.10687.1,STRG.10687.2,Trinity_GG_5905_c0_g1_i4,Trinity_GG_5905_c0_g1_i7,blat.proc3829875.chain_3120,blat.proc3829875.chain_3121,blat.proc3829875.chain_3123	7
scaffold_5	retained_intron	17210337	17210461	-	asmbl_46172,asmbl_46175	none	STRG.6885.2,blat.proc3829889.chain_2913	2	STRG.6885.1,blat.proc3829889.chain_2912,blat.proc3829889.chain_2914,blat.proc3829889.chain_2915	4
scaffold_19	alternate_exon	7583723	7586301	+	asmbl_22275,asmbl_22276	none	STRG.22230.1,STRG.22230.2,Trinity_GG_12292_c1_g1_i2,blat.proc3829881.chain_3168,blat.proc3829881.chain_3171,blat.proc3829881.chain_3175	6	STRG.22230.3,Trinity_GG_12292_c0_g1_i5,blat.proc3829881.chain_3172	3
scaffold_22	alternate_exon	959168	959355	+	asmbl_29202	none	STRG.24727.1,blat.proc3829883.chain_1740	2	STRG.24727.2	1
scaffold_18	starts_in_intron	13113043	13113043	+	asmbl_21015	none	blat.proc3829881.chain_2717	1	STRG.21741.1,STRG.21741.2,STRG.21741.3,blat.proc3829881.chain_2715,blat.proc3829881.chain_2716	5
scaffold_10	alternate_exon	11882544	11882569	-	asmbl_3697	none	STRG.12820.1	1	STRG.12820.2,STRG.12820.3	2
scaffold_2	ends_in_intron	3632256	3632256	+	asmbl_24311	none	Trinity_GG_982_c0_g1_i6	1	STRG.1787.1,STRG.1787.2,blat.proc3829871.chain_1793	3
scaffold_9	retained_exon	644077	644163	+	asmbl_53763	none	STRG.10785.2	1	STRG.10785.1,blat.proc3829875.chain_3238	2
scaffold_17	alt_donor	6959745	6959746	-	asmbl_19049	none	STRG.20342.2,blat.proc3829897.chain_1307	2	STRG.20342.1,blat.proc3829897.chain_1306	2
scaffold_4	ends_in_intron	12525685	12525685	-	asmbl_41660	none	Trinity_GG_19733_c0_g2_i2,blat.proc3829889.chain_943	2	STRG.4884.1,Trinity_GG_19733_c0_g2_i1,blat.proc3829889.chain_944	3
scaffold_5	spliced_intron	16519221	16519444	-	asmbl_46128	none	STRG.6833.2,blat.proc3829889.chain_2876	2	blat.proc3829889.chain_2879	1
scaffold_18	starts_in_intron	3780011	3780011	+	asmbl_20504	none	blat.proc3829881.chain_2059	1	STRG.21180.1,blat.proc3829881.chain_2058	2
scaffold_13	ends_in_intron	9237511	9237511	+	asmbl_11163	none	Trinity_GG_8836_c0_g2_i2,blat.proc3829879.chain_804	2	STRG.16167.1,STRG.16167.2,blat.proc3829879.chain_802,blat.proc3829879.chain_803	4
scaffold_5	spliced_intron	10290524	10290823	-	asmbl_45717	none	STRG.6316.1,blat.proc3829889.chain_2329	2	blat.proc3829889.chain_2328	1
scaffold_12	retained_exon	9668732	9668837	+	asmbl_8836	none	STRG.14928.1	1	STRG.14928.2,Trinity_GG_8223_c0_g1_i2,blat.proc3829877.chain_3380	3
scaffold_18	retained_intron	3096365	3096617	-	asmbl_19781	none	blat.proc3829897.chain_2012	1	STRG.21147.1,STRG.21147.2	2
scaffold_27	alt_donor	638514	638515	-	asmbl_36662,asmbl_36664	none	STRG.28565.1,Trinity_GG_32989_c1_g1_i6,blat.proc3829901.chain_1761	3	Trinity_GG_32989_c1_g1_i5,blat.proc3829901.chain_1762	2
scaffold_15	alternate_exon	14750802	14750907	-	asmbl_15761,asmbl_15763	none	STRG.18886.2,STRG.18886.3,blat.proc3829895.chain_3655	3	STRG.18886.1,blat.proc3829895.chain_3654	2
scaffold_9	skipped_exon	7793887	7795348	+	asmbl_54126	none	blat.proc3829875.chain_3714	1	blat.proc3829875.chain_3706,blat.proc3829875.chain_3709,blat.proc3829875.chain_3710,blat.proc3829875.chain_3713,blat.proc3829875.chain_3716	5
scaffold_6	alt_acceptor	11459	11460	-	asmbl_47956	none	STRG.7049.1	1	blat.proc3829889.chain_3048	1
scaffold_20	skipped_exon	11672198	11673842	-	asmbl_27101	none	STRG.23656.1,blat.proc3829899.chain_652	2	STRG.23656.3,STRG.23656.4,blat.proc3829899.chain_650,blat.proc3829899.chain_653	4
scaffold_2	spliced_intron	16414525	16414765	-	asmbl_23702,asmbl_23703,asmbl_23704,asmbl_23706,asmbl_23708	none	STRG.2585.1,STRG.2585.2,STRG.2585.3,blat.proc3829887.chain_2409,blat.proc3829887.chain_2410,blat.proc3829887.chain_2412	6	blat.proc3829887.chain_2413	1
scaffold_7	alternate_exon	11246482	11246638	+	asmbl_51043	none	STRG.9265.3,Trinity_GG_5108_c0_g1_i2,blat.proc3829875.chain_1652	3	STRG.9265.1,STRG.9265.2,blat.proc3829875.chain_1651	3
scaffold_18	retained_exon	8875853	8875900	-	asmbl_20073,asmbl_20074	none	STRG.21540.2,blat.proc3829897.chain_2287	2	STRG.21540.1,blat.proc3829897.chain_2288	2
scaffold_15	alternate_exon	15847666	15849094	+	asmbl_14781	none	blat.proc3829879.chain_3539	1	STRG.18964.5,STRG.18964.6,Trinity_GG_10383_c0_g1_i3,Trinity_GG_10383_c0_g1_i7,blat.proc3829879.chain_3540,blat.proc3829879.chain_3542	6
scaffold_14	alt_acceptor	7999483	7999484	+	asmbl_12160	none	STRG.17198.1,blat.proc3829879.chain_1938	2	STRG.17198.2,STRG.17198.3,Trinity_GG_9470_c0_g1_i1,blat.proc3829879.chain_1937	4
scaffold_25	alt_acceptor	6164847	6164848	+	asmbl_33595	none	STRG.27487.4	1	STRG.27487.1,blat.proc3829885.chain_499	2
scaffold_1	alt_donor	5955473	5955474	+	asmbl_1791	none	STRG.392.1,Trinity_GG_229_c0_g2_i1,blat.proc3829871.chain_388	3	STRG.392.2,Trinity_GG_229_c0_g1_i1,Trinity_GG_229_c0_g1_i2,blat.proc3829871.chain_386,blat.proc3829871.chain_387	5
scaffold_17	retained_exon	8221255	8221393	+	asmbl_18085,asmbl_18087	none	blat.proc3829881.chain_1199,blat.proc3829881.chain_1203	2	STRG.20435.1,STRG.20435.2,blat.proc3829881.chain_1196,blat.proc3829881.chain_1198,blat.proc3829881.chain_1200	5
scaffold_19	starts_in_intron	12469842	12469842	-	asmbl_21698	none	STRG.22565.2,blat.proc3829897.chain_3303	2	STRG.22565.1,blat.proc3829897.chain_3302,blat.proc3829897.chain_3305	3
scaffold_17	retained_intron	8318778	8318915	+	asmbl_18101	none	blat.proc3829881.chain_1249	1	STRG.20443.1,STRG.20443.2,STRG.20443.3,Trinity_GG_11211_c0_g1_i1,blat.proc3829881.chain_1250,blat.proc3829881.chain_1251,blat.proc3829881.chain_1252,blat.proc3829881.chain_1253	8
scaffold_13	alt_acceptor	3526625	3526626	+	asmbl_10685	none	STRG.15655.2,blat.proc3829879.chain_362	2	STRG.15655.1,blat.proc3829879.chain_361,blat.proc3829879.chain_363,blat.proc3829879.chain_364	4
scaffold_19	skipped_exon	12337312	12338070	+	asmbl_22595	none	blat.proc3829881.chain_3500	1	STRG.22552.1,STRG.22552.2,blat.proc3829881.chain_3499,blat.proc3829881.chain_3501,blat.proc3829881.chain_3502	5
scaffold_17	starts_in_intron	8224718	8224718	+	asmbl_18081	none	Trinity_GG_11183_c0_g1_i13,blat.proc3829881.chain_1194	2	STRG.20435.1,STRG.20435.3,Trinity_GG_11183_c0_g1_i2,blat.proc3829881.chain_1196,blat.proc3829881.chain_1197,blat.proc3829881.chain_1198,blat.proc3829881.chain_1203	7
scaffold_10	starts_in_intron	4240594	4240594	-	asmbl_3188	none	blat.proc3829893.chain_644	1	STRG.12250.1,blat.proc3829893.chain_643	2
scaffold_4	alt_acceptor	3861733	3861734	+	asmbl_42530	none	STRG.4292.1,blat.proc3829873.chain_673	2	STRG.4292.2	1
scaffold_21	spliced_intron	6190737	6191794	+	asmbl_28640	none	STRG.24137.1,blat.proc3829883.chain_1192	2	Trinity_GG_13323_c0_g1_i3,blat.proc3829883.chain_1190,blat.proc3829883.chain_1191	3
scaffold_28	alt_donor	6515562	6515563	-	asmbl_37675	none	blat.proc3829901.chain_2784	1	STRG.29726.2	1
scaffold_6	alternate_exon	12971541	12971585	+	asmbl_47398	none	blat.proc3829875.chain_460	1	STRG.8050.1,STRG.8050.2,STRG.8050.3,blat.proc3829875.chain_459,blat.proc3829875.chain_461,blat.proc3829875.chain_462	6
scaffold_5	starts_in_intron	18248508	18248508	+	asmbl_44885	none	STRG.6951.4	1	STRG.6951.1,STRG.6951.2,STRG.6951.3,Trinity_GG_3817_c0_g1_i2,blat.proc3829873.chain_3083,blat.proc3829873.chain_3084,blat.proc3829873.chain_3085	7
scaffold_24	starts_in_intron	8954273	8954273	+	asmbl_32468	none	blat.proc3829885.chain_26	1	STRG.26896.1,Trinity_GG_14866_c0_g1_i1,Trinity_GG_14866_c0_g1_i3,blat.proc3829885.chain_25,blat.proc3829885.chain_27	5
scaffold_7	ends_in_intron	9920959	9920959	-	asmbl_49914	none	Trinity_GG_22211_c0_g1_i1,blat.proc3829891.chain_1459	2	STRG.9192.1,blat.proc3829891.chain_1456,blat.proc3829891.chain_1457	3
scaffold_16	spliced_intron	6137953	6138100	-	asmbl_16317	none	STRG.19336.1,blat.proc3829897.chain_388	2	blat.proc3829897.chain_389	1
scaffold_9	starts_in_intron	9763944	9763944	+	asmbl_54235	none	Trinity_GG_6329_c0_g1_i2	1	STRG.11339.2,STRG.11339.3	2
scaffold_9	retained_intron	17743121	17743198	+	asmbl_54618	none	blat.proc3829877.chain_523	1	STRG.11853.1,STRG.11853.3,blat.proc3829877.chain_521,blat.proc3829877.chain_525,blat.proc3829877.chain_526,blat.proc3829877.chain_527	6
scaffold_11	retained_intron	857013	857158	+	asmbl_5270	none	blat.proc3829877.chain_1719	1	STRG.13271.1,STRG.13271.2,STRG.13271.3,blat.proc3829877.chain_1716,blat.proc3829877.chain_1717,blat.proc3829877.chain_1718	6
scaffold_19	retained_intron	10302844	10303671	+	asmbl_22450,asmbl_22451	none	STRG.22402.2,blat.proc3829881.chain_3353	2	STRG.22402.4,Trinity_GG_12396_c0_g1_i3,blat.proc3829881.chain_3352	3
scaffold_13	skipped_exon	6396903	6397368	+	asmbl_10909,asmbl_10912,asmbl_10915	none	STRG.15914.1,STRG.15914.3,Trinity_GG_8718_c0_g1_i1,Trinity_GG_8718_c0_g1_i2,blat.proc3829879.chain_555,blat.proc3829879.chain_557	6	STRG.15914.2,STRG.15914.4,STRG.15914.5,Trinity_GG_8718_c0_g1_i4,Trinity_GG_8718_c0_g1_i5,Trinity_GG_8718_c0_g1_i8,Trinity_GG_8718_c0_g1_i9,blat.proc3829879.chain_549,blat.proc3829879.chain_550,blat.proc3829879.chain_552,blat.proc3829879.chain_556	11
scaffold_2	retained_intron	15451748	15451824	+	asmbl_25065	none	blat.proc3829871.chain_2681	1	STRG.2500.1,STRG.2500.2,blat.proc3829871.chain_2679,blat.proc3829871.chain_2680,blat.proc3829871.chain_2682,blat.proc3829871.chain_2683,blat.proc3829871.chain_2684,blat.proc3829871.chain_2685	8
scaffold_15	retained_intron	15501375	15501520	+	asmbl_14754	none	Trinity_GG_10382_c0_g1_i2,blat.proc3829879.chain_3533	2	STRG.18940.1,Trinity_GG_10382_c0_g1_i1,Trinity_GG_10382_c0_g1_i3,Trinity_GG_10382_c0_g1_i5,Trinity_GG_10382_c0_g1_i6,blat.proc3829879.chain_3534,blat.proc3829879.chain_3535,blat.proc3829879.chain_3536,blat.proc3829879.chain_3537	9
scaffold_5	skipped_exon	15416648	15419286	-	asmbl_46046	none	STRG.6723.2,blat.proc3829889.chain_2799	2	STRG.6723.1,STRG.6723.3,blat.proc3829889.chain_2796	3
scaffold_23	alternate_exon	7917468	7921116	-	asmbl_31775	none	STRG.26078.4,blat.proc3829899.chain_3208	2	STRG.26078.1,blat.proc3829899.chain_3207	2
scaffold_5	alt_donor	10804362	10804363	+	asmbl_44359,asmbl_44362	none	STRG.6347.1,blat.proc3829873.chain_2486	2	STRG.6347.2,blat.proc3829873.chain_2487	2
scaffold_17	retained_intron	12142249	12142794	+	asmbl_18389	none	STRG.20740.1,Trinity_GG_11387_c0_g1_i1,blat.proc3829881.chain_1582	3	STRG.20740.2,blat.proc3829881.chain_1581	2
scaffold_16	spliced_intron	9145668	9145955	+	asmbl_17260	none	STRG.19502.2	1	STRG.19502.3,blat.proc3829881.chain_392	2
scaffold_16	spliced_intron	9033041	9033770	+	asmbl_17252	none	STRG.19501.3,blat.proc3829881.chain_391	2	STRG.19501.1,STRG.19501.4,Trinity_GG_10690_c0_g1_i6,blat.proc3829881.chain_387,blat.proc3829881.chain_390	5
scaffold_14	spliced_intron	12751805	12752771	-	asmbl_13582,asmbl_13583	none	STRG.17572.1,STRG.17572.3,blat.proc3829895.chain_2351,blat.proc3829895.chain_2354	4	STRG.17572.2,Trinity_GG_26911_c0_g1_i1,blat.proc3829895.chain_2350,blat.proc3829895.chain_2352,blat.proc3829895.chain_2353	5
scaffold_10	retained_intron	1425275	1425575	+	asmbl_4218,asmbl_4219	none	STRG.12005.5,Trinity_GG_6688_c0_g1_i8,blat.proc3829877.chain_731,blat.proc3829877.chain_732	4	STRG.12005.1,STRG.12005.2,STRG.12005.3,STRG.12005.4,Trinity_GG_6688_c0_g1_i3,Trinity_GG_6688_c0_g1_i4,Trinity_GG_6688_c0_g1_i6,blat.proc3829877.chain_727,blat.proc3829877.chain_728,blat.proc3829877.chain_729,blat.proc3829877.chain_730,blat.proc3829877.chain_733	12
scaffold_17	spliced_intron	9005779	9006436	+	asmbl_18180,asmbl_18181,asmbl_18183	none	STRG.20513.1,STRG.20513.2,STRG.20513.3,blat.proc3829881.chain_1319,blat.proc3829881.chain_1321	5	blat.proc3829881.chain_1318,blat.proc3829881.chain_1320	2
scaffold_22	spliced_intron	10983933	10984017	-	asmbl_30405,asmbl_30406,asmbl_30408,asmbl_30409	none	STRG.25414.2,STRG.25414.4,Trinity_GG_31214_c0_g1_i1,Trinity_GG_31214_c0_g1_i2,Trinity_GG_31214_c0_g1_i4,Trinity_GG_31214_c0_g1_i5,blat.proc3829899.chain_2487,blat.proc3829899.chain_2489,blat.proc3829899.chain_2490,blat.proc3829899.chain_2491	10	STRG.25414.5,Trinity_GG_31214_c0_g1_i3,blat.proc3829899.chain_2488	3
scaffold_12	starts_in_intron	4104395	4104395	+	asmbl_8540	none	Trinity_GG_8061_c0_g1_i2,blat.proc3829877.chain_3101	2	STRG.14584.1,STRG.14584.3	2
scaffold_8	spliced_intron	16619457	16619609	-	asmbl_53441	none	STRG.10625.1,blat.proc3829891.chain_2789	2	blat.proc3829891.chain_2790	1
scaffold_20	starts_in_intron	5183653	5183653	+	asmbl_25762	none	Trinity_GG_12725_c0_g1_i1,blat.proc3829883.chain_191	2	STRG.23141.1,STRG.23141.2,blat.proc3829883.chain_193	3
scaffold_2	alternate_exon	7214026	7214723	+	asmbl_24572	none	STRG.2054.4,Trinity_GG_1174_c0_g1_i3,blat.proc3829871.chain_2146	3	blat.proc3829871.chain_2150	1
scaffold_2	starts_in_intron	5708815	5708815	-	asmbl_23185	none	Trinity_GG_18081_c0_g1_i2,blat.proc3829887.chain_1770	2	STRG.1960.1,blat.proc3829887.chain_1771	2
scaffold_5	alternate_exon	18698544	18699289	-	asmbl_46228	none	STRG.6987.2,Trinity_GG_20913_c1_g1_i1,blat.proc3829889.chain_2985	3	blat.proc3829889.chain_2984	1
scaffold_9	alternate_exon	2508532	2508638	+	asmbl_53824,asmbl_53826	none	STRG.10893.1,STRG.10893.3	2	STRG.10893.2,blat.proc3829875.chain_3346,blat.proc3829875.chain_3347	3
scaffold_15	starts_in_intron	7187408	7187408	-	asmbl_15301	none	blat.proc3829895.chain_3050	1	STRG.18299.1,blat.proc3829895.chain_3048	2
scaffold_3	retained_intron	18346916	18347034	-	asmbl_39561	none	blat.proc3829873.chain_417	1	STRG.4038.1,blat.proc3829889.chain_77	2
scaffold_7	starts_in_intron	13532450	13532450	+	asmbl_51239	none	Trinity_GG_5228_c0_g1_i2,blat.proc3829875.chain_1870	2	STRG.9446.1,blat.proc3829875.chain_1871	2
scaffold_14	retained_intron	1069783	1069875	+	asmbl_11769	none	blat.proc3829879.chain_1439	1	STRG.16754.1,STRG.16754.2,blat.proc3829879.chain_1440,blat.proc3829879.chain_1442	4
scaffold_25	alt_donor	1440381	1440382	+	asmbl_33368	none	STRG.27161.1	1	STRG.27161.2,blat.proc3829885.chain_228	2
scaffold_6	alternate_exon	11558596	11558781	-	asmbl_48697	none	STRG.7947.3,blat.proc3829891.chain_207	2	STRG.7947.1,blat.proc3829891.chain_206	2
scaffold_27	alt_donor	1609440	1609441	-	asmbl_36719	none	STRG.28630.1	1	Trinity_GG_33010_c0_g1_i1,blat.proc3829901.chain_1789	2
scaffold_25	retained_exon	4818566	4818694	+	asmbl_33537	none	STRG.27398.1	1	Trinity_GG_15069_c0_g1_i3,blat.proc3829885.chain_358	2
scaffold_12	ends_in_intron	15262957	15262957	-	asmbl_8199	none	STRG.15320.5,Trinity_GG_25603_c1_g1_i1,blat.proc3829895.chain_58	3	STRG.15320.1,STRG.15320.2,STRG.15320.3,STRG.15320.4,Trinity_GG_25603_c0_g1_i1,Trinity_GG_25603_c0_g1_i3,blat.proc3829895.chain_52,blat.proc3829895.chain_53,blat.proc3829895.chain_54	9
scaffold_6	alt_donor	3286066	3286067	-	asmbl_48183,asmbl_48184	none	STRG.7327.1,STRG.7327.2	2	STRG.7327.3	1
scaffold_9	retained_exon	4206166	4206311	+	asmbl_53923	none	STRG.11013.3	1	STRG.11013.2	1
scaffold_9	retained_intron	9664373	9664460	-	asmbl_55195	none	blat.proc3829891.chain_3506	1	STRG.11333.1	1
scaffold_11	starts_in_intron	16479299	16479299	-	asmbl_7204	none	STRG.14329.1	1	STRG.14329.2,STRG.14329.3	2
scaffold_22	starts_in_intron	10984539	10984539	-	asmbl_30407,asmbl_30409	none	STRG.25414.5,blat.proc3829899.chain_2487	2	STRG.25414.2,STRG.25414.4,Trinity_GG_31214_c0_g1_i1,Trinity_GG_31214_c0_g1_i2,Trinity_GG_31214_c0_g1_i4,blat.proc3829899.chain_2489,blat.proc3829899.chain_2490,blat.proc3829899.chain_2491	8
scaffold_3	alternate_exon	15779967	15785221	-	asmbl_39399	none	STRG.3856.2	1	STRG.3856.4	1
scaffold_10	spliced_intron	13471706	13472424	-	asmbl_3790,asmbl_3793	none	STRG.12931.2,blat.proc3829893.chain_1418,blat.proc3829893.chain_1419	3	STRG.12931.1,STRG.12931.4,Trinity_GG_24242_c0_g1_i1,Trinity_GG_24242_c0_g2_i3,blat.proc3829893.chain_1415,blat.proc3829893.chain_1416	6
scaffold_13	alternate_exon	406893	407071	-	asmbl_9305,asmbl_9308,asmbl_9311,asmbl_9312,asmbl_9314,asmbl_9316	none	STRG.15428.1,Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i7,blat.proc3829895.chain_221,blat.proc3829895.chain_222,blat.proc3829895.chain_229,blat.proc3829895.chain_230,blat.proc3829895.chain_232	10	STRG.15428.2,Trinity_GG_25691_c0_g1_i25,Trinity_GG_25691_c0_g1_i8,blat.proc3829895.chain_223,blat.proc3829895.chain_226	5
scaffold_5	spliced_intron	4696342	4696593	+	asmbl_43948	none	blat.proc3829873.chain_2093	1	STRG.5917.1	1
scaffold_5	skipped_exon	11990788	11991389	-	asmbl_45815	none	STRG.6447.5	1	STRG.6447.1,STRG.6447.3,STRG.6447.4,blat.proc3829889.chain_2519,blat.proc3829889.chain_2520,blat.proc3829889.chain_2521	6
scaffold_25	retained_intron	5157955	5158050	-	asmbl_34229	none	blat.proc3829901.chain_748	1	blat.proc3829901.chain_743	1
scaffold_18	starts_in_intron	2081939	2081939	+	asmbl_20430	none	Trinity_GG_11607_c0_g1_i3,blat.proc3829881.chain_1966	2	STRG.21100.1,STRG.21100.2,STRG.21100.3,blat.proc3829881.chain_1964,blat.proc3829881.chain_1965,blat.proc3829881.chain_1967	6
scaffold_1	alt_acceptor	13924099	13924100	-	asmbl_866	none	STRG.997.2	1	STRG.997.1,STRG.997.3,blat.proc3829887.chain_871	3
scaffold_12	starts_in_intron	11022725	11022725	-	asmbl_7907	none	blat.proc3829893.chain_3408	1	STRG.15036.1,blat.proc3829893.chain_3407	2
scaffold_17	alt_acceptor	12198007	12198008	+	asmbl_18400,asmbl_18401,asmbl_18402	none	STRG.20743.3,STRG.20743.4,STRG.20743.5,blat.proc3829881.chain_1574,blat.proc3829881.chain_1576	5	STRG.20743.1,STRG.20743.2,blat.proc3829881.chain_1575	3
scaffold_19	alt_acceptor	3189545	3189546	-	asmbl_21299,asmbl_21300	none	STRG.21999.4,blat.proc3829897.chain_2770	2	STRG.21999.1,STRG.21999.3,blat.proc3829897.chain_2767,blat.proc3829897.chain_2769	4
scaffold_24	retained_intron	5881520	5881765	-	asmbl_32897,asmbl_32898,asmbl_32899,asmbl_32900	none	STRG.26634.2,STRG.26634.3,STRG.26634.4,STRG.26634.5,blat.proc3829899.chain_3712,blat.proc3829899.chain_3713	6	STRG.26634.1,blat.proc3829899.chain_3709,blat.proc3829899.chain_3710,blat.proc3829899.chain_3711	4
scaffold_7	alt_donor	2310200	2310201	+	asmbl_50512	none	STRG.8659.2	1	STRG.8659.1,STRG.8659.3,Trinity_GG_4762_c0_g1_i2,blat.proc3829875.chain_1092	4
scaffold_2	retained_intron	8055011	8055080	-	asmbl_23328	none	blat.proc3829887.chain_2009	1	STRG.2095.1,STRG.2095.2,STRG.2095.3,STRG.2095.4,STRG.2095.5,blat.proc3829887.chain_2005,blat.proc3829887.chain_2006,blat.proc3829887.chain_2007,blat.proc3829887.chain_2008	9
scaffold_11	alternate_exon	6710835	6713217	-	asmbl_6712,asmbl_6713,asmbl_6715	none	STRG.13703.1,STRG.13703.2,STRG.13703.4,Trinity_GG_24701_c1_g1_i1,blat.proc3829893.chain_2182,blat.proc3829893.chain_2183	6	STRG.13703.6,Trinity_GG_24701_c0_g1_i5,blat.proc3829893.chain_2181	3
scaffold_7	retained_exon	3390334	3390498	-	asmbl_49604	none	STRG.8733.1	1	STRG.8733.2	1
scaffold_17	retained_intron	8626666	8626834	+	asmbl_18138	none	Trinity_GG_11185_c0_g1_i1,blat.proc3829881.chain_1209	2	STRG.20466.1,Trinity_GG_11185_c0_g1_i3,blat.proc3829881.chain_1210	3
scaffold_24	alt_acceptor	4281252	4281253	+	asmbl_32192	none	STRG.26568.3	1	STRG.26568.1,STRG.26568.2,blat.proc3829883.chain_3465,blat.proc3829883.chain_3466	4
scaffold_8	retained_intron	12728267	12728451	-	asmbl_53227	none	blat.proc3829891.chain_2565	1	STRG.10443.1,STRG.10443.2,blat.proc3829891.chain_2564	3
scaffold_13	retained_exon	11615375	11615516	+	asmbl_11284	none	STRG.16298.1,blat.proc3829879.chain_1047	2	STRG.16298.2,blat.proc3829879.chain_1046	2
scaffold_14	retained_intron	11386935	11387002	-	asmbl_13463	none	blat.proc3829895.chain_2094	1	STRG.17457.3,blat.proc3829895.chain_2095	2
scaffold_3	spliced_intron	9518073	9518444	+	asmbl_40185,asmbl_40186,asmbl_40187	none	STRG.3434.1,STRG.3434.2,Trinity_GG_1959_c0_g1_i1,blat.proc3829871.chain_3639,blat.proc3829871.chain_3641	5	Trinity_GG_1959_c0_g1_i3,blat.proc3829871.chain_3637	2
scaffold_4	starts_in_intron	17164576	17164576	+	asmbl_43381	none	Trinity_GG_2893_c0_g1_i4	1	STRG.5317.1,STRG.5317.2	2
scaffold_7	alt_acceptor	809102	809103	+	asmbl_50443	none	STRG.8613.1,Trinity_GG_4707_c1_g1_i3,blat.proc3829875.chain_977	3	Trinity_GG_4707_c1_g1_i1,blat.proc3829875.chain_979	2
scaffold_21	starts_in_intron	8004586	8004586	+	asmbl_28790,asmbl_28792	none	STRG.24326.2,Trinity_GG_13472_c0_g1_i7	2	blat.proc3829883.chain_1463	1
scaffold_10	alt_acceptor	14691921	14691922	+	asmbl_4921	none	STRG.13008.3,blat.proc3829877.chain_1535	2	STRG.13008.1,STRG.13008.2,blat.proc3829877.chain_1537	3
scaffold_7	starts_in_intron	6634470	6634470	-	asmbl_49736	none	blat.proc3829891.chain_1246	1	STRG.8927.1,blat.proc3829891.chain_1247	2
scaffold_3	starts_in_intron	4287951	4287951	+	asmbl_39959	none	Trinity_GG_1770_c0_g2_i1,blat.proc3829871.chain_3292	2	Trinity_GG_1770_c0_g2_i4,blat.proc3829871.chain_3293	2
scaffold_7	retained_intron	12270450	12271072	+	asmbl_51113	none	STRG.9313.6,blat.proc3829875.chain_1715	2	STRG.9313.4,STRG.9313.7,Trinity_GG_5141_c0_g1_i5,Trinity_GG_5141_c0_g1_i6,Trinity_GG_5141_c0_g1_i8,blat.proc3829875.chain_1712,blat.proc3829875.chain_1713	7
scaffold_8	retained_intron	9811870	9812023	+	asmbl_52090	none	STRG.10216.1,Trinity_GG_5680_c1_g1_i2	2	STRG.10216.2,blat.proc3829875.chain_2718	2
scaffold_14	spliced_intron	8405603	8405746	-	asmbl_13291,asmbl_13292	none	STRG.17264.2,STRG.17264.4	2	STRG.17264.1,STRG.17264.3,blat.proc3829895.chain_1977	3
scaffold_10	retained_intron	922305	922681	+	asmbl_4163	none	blat.proc3829877.chain_645	1	STRG.11958.1,blat.proc3829877.chain_642,blat.proc3829877.chain_643,blat.proc3829877.chain_644	4
scaffold_14	retained_intron	11513522	11513728	+	asmbl_12363	none	STRG.17466.1,Trinity_GG_9616_c0_g1_i2,Trinity_GG_9616_c0_g1_i3,blat.proc3829879.chain_2177,blat.proc3829879.chain_2178	5	STRG.17466.2	1
scaffold_500	retained_intron	1484	1625	+	asmbl_46445,asmbl_46447	none	blat.proc3829885.chain_3364,blat.proc3829885.chain_3367	2	blat.proc3829885.chain_3365,blat.proc3829885.chain_3368	2
scaffold_21	spliced_intron	6818231	6818419	+	asmbl_28718,asmbl_28720,asmbl_28721,asmbl_28722	none	STRG.24196.1,blat.proc3829883.chain_1300,blat.proc3829883.chain_1302,blat.proc3829883.chain_1303,blat.proc3829883.chain_1304	5	blat.proc3829883.chain_1301	1
scaffold_12	alt_donor	7422558	7422559	-	asmbl_7715	none	blat.proc3829893.chain_3198	1	STRG.14807.2,blat.proc3829893.chain_3199	2
scaffold_20	spliced_intron	11743342	11743680	-	asmbl_27119	none	STRG.23678.1,blat.proc3829899.chain_601	2	blat.proc3829899.chain_599	1
scaffold_7	starts_in_intron	18011240	18011240	-	asmbl_50268	none	blat.proc3829891.chain_1854	1	STRG.9631.1,blat.proc3829891.chain_1855	2
scaffold_14	alt_acceptor	1375638	1375639	-	asmbl_12855,asmbl_12856,asmbl_12858,asmbl_12859	none	STRG.16775.1,STRG.16775.2,STRG.16775.3,blat.proc3829895.chain_1487,blat.proc3829895.chain_1488,blat.proc3829895.chain_1489	6	blat.proc3829895.chain_1490	1
scaffold_17	skipped_exon	2634157	2636152	+	asmbl_17801,asmbl_17806	none	STRG.20044.3,Trinity_GG_10982_c0_g1_i2,blat.proc3829881.chain_878	3	STRG.20044.4,blat.proc3829881.chain_876	2
scaffold_13	alt_acceptor	3476938	3476939	-	asmbl_9502	none	STRG.15643.2	1	STRG.15643.1,blat.proc3829895.chain_387	2
scaffold_19	alt_acceptor	5994958	5994959	-	asmbl_21397	none	STRG.22123.1,Trinity_GG_29320_c0_g1_i2,blat.proc3829897.chain_2821	3	STRG.22123.2,Trinity_GG_29320_c0_g1_i1,blat.proc3829897.chain_2820	3
scaffold_21	alt_acceptor	6558914	6558915	-	asmbl_27758	none	STRG.24163.1	1	Trinity_GG_30475_c0_g1_i1,blat.proc3829899.chain_1228	2
scaffold_10	alternate_exon	16531477	16534211	+	asmbl_4992,asmbl_4995	none	STRG.13112.1,blat.proc3829877.chain_1619,blat.proc3829877.chain_1622	3	STRG.13112.2,blat.proc3829877.chain_1620	2
scaffold_21	starts_in_intron	7521271	7521271	+	asmbl_28763	none	Trinity_GG_13450_c0_g1_i3,blat.proc3829883.chain_1417	2	STRG.24274.1,Trinity_GG_13450_c0_g1_i2,blat.proc3829883.chain_1419	3
scaffold_21	alternate_exon	5519284	5519497	-	asmbl_27692	none	blat.proc3829899.chain_1156	1	blat.proc3829899.chain_1154	1
scaffold_23	alternate_exon	10204072	10205751	-	asmbl_31853	none	STRG.26215.2	1	STRG.26215.3	1
scaffold_15	alt_donor	15914801	15914802	+	asmbl_14797	none	STRG.18967.1	1	STRG.18967.2	1
scaffold_26	alternate_exon	4814113	4814177	-	asmbl_34872,asmbl_34873	none	STRG.28181.2,blat.proc3829901.chain_1376	2	STRG.28181.1,blat.proc3829901.chain_1375	2
scaffold_16	starts_in_intron	1780227	1780227	+	asmbl_16877	none	STRG.19095.4,blat.proc3829879.chain_3710,blat.proc3829879.chain_3713	3	STRG.19095.1,STRG.19095.3,blat.proc3829879.chain_3708,blat.proc3829879.chain_3709,blat.proc3829879.chain_3712	5
scaffold_2367	alt_acceptor	690	691	-	asmbl_32001	none	STRG.30719.2	1	STRG.30719.1	1
scaffold_4	starts_in_intron	12711257	12711257	+	asmbl_43070	none	STRG.4912.3,Trinity_GG_2707_c0_g1_i1,blat.proc3829873.chain_1199	3	STRG.4912.1,blat.proc3829873.chain_1195,blat.proc3829873.chain_1201	3
scaffold_13	retained_exon	2662068	2662117	-	asmbl_9431	none	blat.proc3829895.chain_237	1	STRG.15557.1,blat.proc3829895.chain_240	2
scaffold_5	alt_acceptor	4755585	4755586	+	asmbl_43960,asmbl_43961	none	STRG.5927.1,blat.proc3829873.chain_2070,blat.proc3829873.chain_2071	3	Trinity_GG_3243_c0_g1_i3	1
scaffold_3	retained_intron	10607348	10607574	-	asmbl_39054	none	STRG.3497.3,blat.proc3829887.chain_3203	2	STRG.3497.1,STRG.3497.2,blat.proc3829887.chain_3201,blat.proc3829887.chain_3202	4
scaffold_16	retained_intron	787406	787665	+	asmbl_16838,asmbl_16839	none	blat.proc3829879.chain_3589,blat.proc3829879.chain_3592	2	STRG.19046.1,STRG.19046.2,STRG.19046.3,blat.proc3829879.chain_3590,blat.proc3829879.chain_3591,blat.proc3829879.chain_3593	6
scaffold_11	alt_acceptor	9810101	9810102	+	asmbl_5861	none	STRG.13982.1	1	STRG.13982.2,blat.proc3829877.chain_2471,blat.proc3829877.chain_2472	3
scaffold_11	alternate_exon	194620	194671	+	asmbl_5233	none	STRG.13240.2,Trinity_GG_7280_c0_g1_i2,blat.proc3829877.chain_1750	3	STRG.13240.1,blat.proc3829877.chain_1751,blat.proc3829877.chain_1752	3
scaffold_4	retained_exon	19679973	19680110	+	asmbl_43500,asmbl_43502	none	STRG.5556.1,STRG.5556.2,Trinity_GG_3040_c0_g1_i3,blat.proc3829873.chain_1749	4	STRG.5556.3,Trinity_GG_3040_c0_g1_i2,blat.proc3829873.chain_1750	3
scaffold_2	starts_in_intron	16343951	16343951	-	asmbl_23697	none	blat.proc3829887.chain_2455	1	STRG.2575.1	1
scaffold_10	retained_exon	5856956	5857031	-	asmbl_3313,asmbl_3314,asmbl_3315	none	STRG.12401.1,STRG.12401.2,STRG.12401.3,blat.proc3829893.chain_872	4	blat.proc3829893.chain_873	1
scaffold_21	retained_exon	10173988	10174046	-	asmbl_28037	none	STRG.24469.1	1	STRG.24469.2	1
scaffold_3	alt_donor	3322931	3322932	-	asmbl_38727,asmbl_38730	none	STRG.3076.1,blat.proc3829887.chain_2788,blat.proc3829887.chain_2789	3	STRG.3076.2,blat.proc3829887.chain_2790	2
scaffold_17	starts_in_intron	1511425	1511425	-	asmbl_18764	none	blat.proc3829897.chain_950	1	STRG.19976.1,blat.proc3829897.chain_951,blat.proc3829897.chain_952	3
scaffold_4	alternate_exon	16772378	16772467	-	asmbl_41961	none	STRG.5263.2,blat.proc3829889.chain_1236	2	STRG.5263.1	1
scaffold_6	alt_acceptor	12920081	12920082	+	asmbl_47388	none	STRG.8044.2	1	STRG.8044.1,blat.proc3829875.chain_444	2
scaffold_20	spliced_intron	9104952	9105052	+	asmbl_25981,asmbl_25984,asmbl_25987	none	STRG.23442.1,STRG.23442.2,Trinity_GG_12953_c0_g1_i1,Trinity_GG_12953_c0_g1_i2,blat.proc3829883.chain_540,blat.proc3829883.chain_543	6	blat.proc3829883.chain_541	1
scaffold_27	alt_donor	4945235	4945236	+	asmbl_36285,asmbl_36287	none	STRG.28914.5,STRG.28914.6,blat.proc3829885.chain_2067	3	STRG.28914.1,STRG.28914.2,STRG.28914.3,blat.proc3829885.chain_2069	4
scaffold_6	retained_exon	17886622	17886665	+	asmbl_47738	none	Trinity_GG_4642_c0_g1_i3,blat.proc3829875.chain_829	2	STRG.8475.1,Trinity_GG_4642_c0_g1_i5,blat.proc3829875.chain_828	3
scaffold_15	skipped_exon	3368374	3368889	-	asmbl_15101	none	STRG.18096.1	1	STRG.18096.2	1
scaffold_5	starts_in_intron	1082556	1082556	-	asmbl_45210	none	Trinity_GG_20208_c0_g1_i2,blat.proc3829889.chain_1766	2	STRG.5654.1,STRG.5654.2,Trinity_GG_20208_c0_g1_i3,blat.proc3829889.chain_1767	4
scaffold_10	alt_donor	7275859	7275860	+	asmbl_4550,asmbl_4551,asmbl_4553,asmbl_4554,asmbl_4555	none	STRG.12531.1,STRG.12531.2,STRG.12531.3,blat.proc3829877.chain_1100,blat.proc3829877.chain_1101,blat.proc3829877.chain_1103,blat.proc3829877.chain_1105	7	blat.proc3829877.chain_1104	1
scaffold_11	starts_in_intron	15790693	15790693	+	asmbl_6110	none	blat.proc3829877.chain_2713	1	STRG.14305.1,blat.proc3829877.chain_2712	2
scaffold_10	starts_in_intron	12128631	12128631	+	asmbl_4803	none	STRG.12838.2	1	STRG.12838.1	1
scaffold_25	spliced_intron	362923	362986	-	asmbl_33971	none	blat.proc3829901.chain_393	1	STRG.27060.1	1
scaffold_10	alt_acceptor	5390781	5390782	+	asmbl_4444	none	STRG.12356.1,blat.proc3829877.chain_992	2	blat.proc3829877.chain_994	1
scaffold_12	retained_exon	2577724	2577884	+	asmbl_8462	none	STRG.14487.1,Trinity_GG_8011_c0_g1_i1,blat.proc3829877.chain_3001	3	STRG.14487.2,Trinity_GG_8011_c0_g1_i2,blat.proc3829877.chain_3002	3
scaffold_27	alternate_exon	3649290	3649336	-	asmbl_36867	none	STRG.28814.2,Trinity_GG_33152_c0_g1_i2,blat.proc3829901.chain_2007	3	STRG.28814.1,blat.proc3829901.chain_2006	2
scaffold_5	spliced_intron	16320680	16320777	+	asmbl_44743,asmbl_44746	none	STRG.6820.1,blat.proc3829873.chain_2898,blat.proc3829873.chain_2901	3	blat.proc3829873.chain_2899	1
scaffold_17	alternate_exon	8622437	8622815	+	asmbl_18132	none	STRG.20462.4,blat.proc3829881.chain_1266,blat.proc3829881.chain_1269	3	STRG.20462.5,blat.proc3829881.chain_1271	2
scaffold_22	spliced_intron	9340082	9340165	-	asmbl_30302	none	STRG.25263.3	1	STRG.25263.1,blat.proc3829899.chain_2276	2
scaffold_25	starts_in_intron	4578198	4578198	+	asmbl_33518	none	Trinity_GG_15111_c0_g1_i10,blat.proc3829885.chain_436	2	STRG.27377.1,STRG.27377.2,STRG.27377.3,Trinity_GG_15111_c0_g1_i4,Trinity_GG_15111_c0_g1_i5,Trinity_GG_15111_c0_g1_i9,blat.proc3829885.chain_437,blat.proc3829885.chain_439,blat.proc3829885.chain_441	9
scaffold_7	starts_in_intron	12576064	12576064	-	asmbl_50063	none	STRG.9355.1,Trinity_GG_22277_c1_g1_i1,blat.proc3829891.chain_1593	3	STRG.9355.2	1
scaffold_12	retained_intron	15212744	15213043	+	asmbl_9079	none	Trinity_GG_8383_c0_g1_i4,blat.proc3829877.chain_3664	2	STRG.15307.1,STRG.15307.2,Trinity_GG_8383_c0_g1_i1,Trinity_GG_8383_c0_g1_i2,blat.proc3829877.chain_3665,blat.proc3829877.chain_3666	6
scaffold_10	retained_intron	7827883	7827959	-	asmbl_3479	none	Trinity_GG_24026_c0_g1_i1,blat.proc3829893.chain_1048	2	STRG.12564.1,blat.proc3829893.chain_1049	2
scaffold_10	alt_acceptor	3794245	3794246	-	asmbl_3145	none	STRG.12214.3	1	STRG.12214.1,blat.proc3829893.chain_665,blat.proc3829893.chain_667	3
scaffold_13	starts_in_intron	8805932	8805932	-	asmbl_9939,asmbl_9942	none	STRG.16137.4,Trinity_GG_26094_c0_g1_i4,blat.proc3829895.chain_939	3	blat.proc3829895.chain_940,blat.proc3829895.chain_941,blat.proc3829895.chain_942,blat.proc3829895.chain_943	4
scaffold_6	alt_donor	3805720	3805721	+	asmbl_46805,asmbl_46807,asmbl_46812	none	STRG.7379.1,STRG.7379.2,STRG.7379.5	3	STRG.7379.3,STRG.7379.4	2
scaffold_3	starts_in_intron	7593333	7593333	+	asmbl_40130	none	blat.proc3829871.chain_3549	1	STRG.3345.1,Trinity_GG_1911_c0_g1_i1,blat.proc3829871.chain_3546,blat.proc3829871.chain_3547,blat.proc3829871.chain_3548	5
scaffold_28	alt_donor	833082	833083	-	asmbl_37267	none	STRG.29277.2	1	STRG.29277.1,blat.proc3829901.chain_2329	2
scaffold_16	spliced_intron	7910328	7910505	+	asmbl_17158,asmbl_17160	none	STRG.19432.1,Trinity_GG_10619_c0_g1_i2,blat.proc3829881.chain_260,blat.proc3829881.chain_261	4	Trinity_GG_10619_c0_g1_i1,blat.proc3829881.chain_262	2
scaffold_20	starts_in_intron	10453446	10453446	-	asmbl_27025	none	blat.proc3829899.chain_515	1	STRG.23571.1,Trinity_GG_30115_c0_g1_i2,blat.proc3829899.chain_516	3
scaffold_16	alternate_exon	11953401	11954684	+	asmbl_17420	none	STRG.19712.1,Trinity_GG_10805_c0_g1_i3,blat.proc3829881.chain_578	3	STRG.19712.2,Trinity_GG_10805_c0_g1_i2,blat.proc3829881.chain_579	3
scaffold_14	alt_donor	11639387	11639388	+	asmbl_12377	none	STRG.17482.1	1	STRG.17482.2	1
scaffold_2	starts_in_intron	15649437	15649437	-	asmbl_23658	none	blat.proc3829887.chain_2368	1	STRG.2515.1,STRG.2515.2,blat.proc3829887.chain_2369	3
scaffold_28	retained_intron	5234854	5235055	-	asmbl_37590	none	Trinity_GG_33579_c0_g1_i7,blat.proc3829901.chain_2679	2	STRG.29652.1,STRG.29652.2,blat.proc3829901.chain_2678,blat.proc3829901.chain_2680,blat.proc3829901.chain_2683,blat.proc3829901.chain_2684,blat.proc3829901.chain_2685,blat.proc3829901.chain_2687	8
scaffold_10	ends_in_intron	10283179	10283179	-	asmbl_3621	none	blat.proc3829893.chain_1238	1	STRG.12709.3,blat.proc3829893.chain_1236	2
scaffold_15	skipped_exon	5355541	5357686	-	asmbl_15212	none	STRG.18225.3	1	STRG.18225.1,STRG.18225.2	2
scaffold_18	alt_donor	8864198	8864199	-	asmbl_20064	none	Trinity_GG_29045_c0_g1_i17,blat.proc3829897.chain_2361	2	STRG.21541.1,STRG.21541.2,STRG.21541.3,blat.proc3829897.chain_2356,blat.proc3829897.chain_2357,blat.proc3829897.chain_2358,blat.proc3829897.chain_2359,blat.proc3829897.chain_2360,blat.proc3829897.chain_2362	9
scaffold_6	spliced_intron	9093568	9093795	+	asmbl_47137,asmbl_47140	none	STRG.7781.1,STRG.7781.3,blat.proc3829875.chain_162	3	STRG.7781.2	1
scaffold_7	retained_intron	15247476	15247936	+	asmbl_51300,asmbl_51301	none	STRG.9529.2,Trinity_GG_5316_c0_g1_i1,blat.proc3829875.chain_2037,blat.proc3829875.chain_2042,blat.proc3829875.chain_2043	5	STRG.9529.3,blat.proc3829875.chain_2038,blat.proc3829875.chain_2041	3
scaffold_28	ends_in_intron	2580955	2580955	+	asmbl_38077	none	blat.proc3829885.chain_2454	1	STRG.29411.1,blat.proc3829885.chain_2453	2
scaffold_1	retained_intron	5207312	5207851	+	asmbl_1711,asmbl_1713	none	blat.proc3829871.chain_393,blat.proc3829871.chain_395	2	blat.proc3829871.chain_391	1
scaffold_13	starts_in_intron	11539299	11539299	+	asmbl_11259	none	blat.proc3829879.chain_1037	1	STRG.16290.1,blat.proc3829879.chain_1038	2
scaffold_11	spliced_intron	1983670	1984066	-	asmbl_6440,asmbl_6441	none	STRG.13349.1,blat.proc3829893.chain_1817	2	Trinity_GG_24491_c0_g1_i5,blat.proc3829893.chain_1814,blat.proc3829893.chain_1816	3
scaffold_26	alt_donor	6351388	6351389	-	asmbl_34956	none	Trinity_GG_32794_c0_g1_i3,blat.proc3829901.chain_1405	2	STRG.28315.2,STRG.28315.3,STRG.28315.4,STRG.28315.5,blat.proc3829901.chain_1403,blat.proc3829901.chain_1404,blat.proc3829901.chain_1406	7
scaffold_13	retained_intron	6431003	6431154	-	asmbl_9745,asmbl_9749,asmbl_9750,asmbl_9751	none	STRG.15922.2,Trinity_GG_25979_c0_g1_i11,Trinity_GG_25979_c0_g1_i4,blat.proc3829895.chain_708,blat.proc3829895.chain_712,blat.proc3829895.chain_713,blat.proc3829895.chain_714,blat.proc3829895.chain_715,blat.proc3829895.chain_716	9	STRG.15922.1,blat.proc3829895.chain_710	2
scaffold_9	alt_acceptor	376913	376914	+	asmbl_53740	none	STRG.10766.1,blat.proc3829875.chain_3253	2	Trinity_GG_5971_c0_g1_i1	1
scaffold_5	retained_exon	19031664	19031726	-	asmbl_46260,asmbl_46269	none	STRG.7018.4,blat.proc3829889.chain_3003,blat.proc3829889.chain_3006	3	STRG.7018.3,STRG.7018.5,STRG.7018.7,Trinity_GG_20922_c0_g1_i8,blat.proc3829889.chain_3008,blat.proc3829889.chain_3009,blat.proc3829889.chain_3010	7
scaffold_21	alt_donor	8541057	8541058	-	asmbl_27949	none	STRG.24364.3,blat.proc3829899.chain_1397	2	STRG.24364.2,blat.proc3829899.chain_1396,blat.proc3829899.chain_1398	3
scaffold_4	alternate_exon	5579500	5579556	-	asmbl_41348	none	STRG.4454.2,blat.proc3829889.chain_568	2	STRG.4454.1,blat.proc3829889.chain_567	2
scaffold_17	alternate_exon	6980021	6980091	-	asmbl_19055,asmbl_19056	none	STRG.20347.2,blat.proc3829897.chain_1269	2	STRG.20347.1,blat.proc3829897.chain_1268,blat.proc3829897.chain_1270	3
scaffold_23	spliced_intron	1576741	1576856	+	asmbl_30646	none	STRG.25617.1,blat.proc3829883.chain_2542	2	Trinity_GG_14161_c0_g1_i2,blat.proc3829883.chain_2541	2
scaffold_5	starts_in_intron	109390	109390	-	asmbl_45144	none	Trinity_GG_20162_c0_g1_i5	1	STRG.5570.1,STRG.5570.2	2
scaffold_2	skipped_exon	17613910	17614818	+	asmbl_25220	none	STRG.2650.2	1	STRG.2650.1,Trinity_GG_1507_c1_g1_i1,blat.proc3829871.chain_2855,blat.proc3829871.chain_2858	4
scaffold_26	starts_in_intron	3562773	3562773	+	asmbl_35325	none	Trinity_GG_15467_c0_g1_i5,blat.proc3829885.chain_1004	2	STRG.28018.1,STRG.28018.2,STRG.28018.4,blat.proc3829885.chain_1001,blat.proc3829885.chain_1003,blat.proc3829885.chain_1005	6
scaffold_6	retained_intron	298817	299335	+	asmbl_46599	none	STRG.7082.3,Trinity_GG_3916_c0_g1_i3,blat.proc3829873.chain_3252	3	STRG.7082.2,Trinity_GG_3916_c0_g1_i8,blat.proc3829873.chain_3249	3
scaffold_2	alt_donor	6351045	6351046	-	asmbl_23223	none	STRG.2000.2	1	STRG.2000.1,Trinity_GG_18078_c0_g1_i1,blat.proc3829887.chain_1763	3
scaffold_1	alternate_exon	18279767	18279861	-	asmbl_1095	none	STRG.1276.3,blat.proc3829887.chain_1185	2	blat.proc3829887.chain_1184	1
scaffold_2	retained_intron	7924289	7924370	-	asmbl_23319	none	blat.proc3829887.chain_2034	1	STRG.2092.1,STRG.2092.2,blat.proc3829887.chain_2033,blat.proc3829887.chain_2036	4
scaffold_5	alternate_exon	12915612	12915967	-	asmbl_45871,asmbl_45873	none	STRG.6515.2,blat.proc3829889.chain_2568,blat.proc3829889.chain_2570	3	STRG.6515.1,blat.proc3829889.chain_2569	2
scaffold_21	alt_acceptor	8283335	8283336	-	asmbl_27934	none	blat.proc3829899.chain_1456	1	STRG.24352.1,STRG.24352.2,blat.proc3829899.chain_1457	3
scaffold_17	ends_in_intron	12369938	12369938	-	asmbl_19371	none	Trinity_GG_28651_c0_g2_i1	1	STRG.20776.1,STRG.20776.3	2
scaffold_10	alternate_exon	2688167	2688235	-	asmbl_3035	none	STRG.12080.2,blat.proc3829893.chain_510	2	STRG.12080.1,blat.proc3829893.chain_511	2
scaffold_11	spliced_intron	13092586	13094447	+	asmbl_6000,asmbl_6001,asmbl_6006,asmbl_6007	none	STRG.14176.1,STRG.14176.3,blat.proc3829877.chain_2671,blat.proc3829877.chain_2672,blat.proc3829877.chain_2674,blat.proc3829877.chain_2678	6	Trinity_GG_7823_c0_g1_i13,blat.proc3829877.chain_2668,blat.proc3829877.chain_2670,blat.proc3829877.chain_2673,blat.proc3829877.chain_2676,blat.proc3829877.chain_2677	6
scaffold_1	spliced_intron	6320286	6320404	-	asmbl_364,asmbl_366	none	STRG.431.1,blat.proc3829887.chain_321,blat.proc3829887.chain_323	3	blat.proc3829887.chain_322	1
scaffold_3	skipped_exon	2182686	2183829	-	asmbl_38689	none	STRG.3014.1,blat.proc3829885.chain_3317,blat.proc3829887.chain_2805	3	blat.proc3829885.chain_3316,blat.proc3829887.chain_2804	2
scaffold_5	spliced_intron	18561228	18562070	+	asmbl_44922,asmbl_44926,asmbl_44927	none	STRG.6978.1,STRG.6978.2,STRG.6978.4,blat.proc3829873.chain_3147	4	STRG.6978.3,STRG.6978.5,Trinity_GG_3847_c0_g1_i3,blat.proc3829873.chain_3149,blat.proc3829873.chain_3150	5
scaffold_20	starts_in_intron	11932010	11932010	+	asmbl_26257	none	Trinity_GG_13117_c0_g1_i1,blat.proc3829883.chain_829	2	STRG.23681.1	1
scaffold_1	alternate_exon	22369668	22371747	+	asmbl_2679	none	STRG.1490.1	1	STRG.1490.6	1
scaffold_1	starts_in_intron	13060451	13060451	-	asmbl_795	none	STRG.940.2	1	STRG.940.1,blat.proc3829887.chain_832	2
scaffold_9	spliced_intron	14817657	14817753	-	asmbl_55462	none	STRG.11693.5,blat.proc3829893.chain_3	2	STRG.11693.2,Trinity_GG_23432_c0_g1_i6,blat.proc3829893.chain_9	3
scaffold_17	alt_donor	684498	684499	+	asmbl_17687	none	STRG.19909.3,blat.proc3829881.chain_717	2	STRG.19909.1,STRG.19909.2,blat.proc3829881.chain_718	3
scaffold_2	alt_acceptor	9322568	9322569	-	asmbl_23400	none	STRG.2176.2	1	STRG.2176.4	1
scaffold_5	alternate_exon	2235044	2235386	-	asmbl_45268	none	STRG.5750.2	1	blat.proc3829889.chain_1846	1
scaffold_20	alt_donor	10383223	10383224	+	asmbl_26109,asmbl_26113,asmbl_26114,asmbl_26115	none	STRG.23569.2,STRG.23569.3,STRG.23569.5,Trinity_GG_12979_c0_g1_i2,blat.proc3829883.chain_594	5	STRG.23569.1,Trinity_GG_12979_c0_g1_i5,Trinity_GG_12979_c0_g1_i6,blat.proc3829883.chain_590,blat.proc3829883.chain_591,blat.proc3829883.chain_592	6
scaffold_8	spliced_intron	4865417	4865526	+	asmbl_51852	none	STRG.9939.1,blat.proc3829875.chain_2441	2	blat.proc3829875.chain_2440	1
scaffold_15	alternate_exon	6785466	6785659	+	asmbl_14204	none	STRG.18285.2,Trinity_GG_10035_c0_g1_i1,blat.proc3829879.chain_2921	3	STRG.18285.1	1
scaffold_25	retained_exon	6067784	6067816	-	asmbl_34294	none	blat.proc3829901.chain_721	1	STRG.27475.1,blat.proc3829901.chain_717,blat.proc3829901.chain_722	3
scaffold_10	alt_donor	1292300	1292301	+	asmbl_4204	none	STRG.12009.3,Trinity_GG_6651_c1_g2_i1,blat.proc3829877.chain_669	3	STRG.12009.1,blat.proc3829877.chain_668	2
scaffold_23	alt_donor	7982619	7982620	+	asmbl_31041	none	STRG.26088.1	1	STRG.26088.2	1
scaffold_9	alternate_exon	571249	571526	+	asmbl_53750	none	STRG.10779.3,Trinity_GG_5955_c2_g1_i1	2	STRG.10779.1,blat.proc3829875.chain_3224	2
scaffold_3	alt_acceptor	3259113	3259114	+	asmbl_39905,asmbl_39906	none	blat.proc3829871.chain_3306,blat.proc3829871.chain_3309	2	STRG.3087.1,STRG.3087.6	2
scaffold_11	alt_acceptor	11936490	11936491	-	asmbl_7019,asmbl_7022	none	STRG.14160.4,STRG.14160.5	2	STRG.14160.1,STRG.14160.2,STRG.14160.3	3
scaffold_18	retained_exon	3918364	3918460	-	asmbl_19821	none	STRG.21192.5	1	STRG.21192.2	1
scaffold_22	spliced_intron	215344	216306	+	asmbl_29112,asmbl_29115,asmbl_29117	none	STRG.24661.2,STRG.24661.3,STRG.24661.5,blat.proc3829883.chain_1716,blat.proc3829883.chain_1717	5	STRG.24661.1,STRG.24661.4,Trinity_GG_13639_c0_g1_i4,blat.proc3829883.chain_1718	4
scaffold_20	alternate_exon	8167486	8167647	+	asmbl_25903	none	STRG.23350.1,Trinity_GG_12869_c0_g1_i2,blat.proc3829883.chain_427	3	STRG.23350.3	1
scaffold_5	spliced_intron	10171095	10171274	+	asmbl_44331	none	STRG.6310.1,blat.proc3829873.chain_2380	2	blat.proc3829873.chain_2377	1
scaffold_9	skipped_exon	9722574	9723219	+	asmbl_54226	none	blat.proc3829877.chain_103	1	STRG.11338.1,blat.proc3829877.chain_104	2
scaffold_4	skipped_exon	18555116	18558044	-	asmbl_42133	none	blat.proc3829889.chain_1544	1	STRG.5457.1,STRG.5457.2,blat.proc3829889.chain_1543,blat.proc3829889.chain_1545	4
scaffold_5	alternate_exon	17192039	17192382	+	asmbl_44802	none	STRG.6883.3,blat.proc3829873.chain_2980	2	STRG.6883.2	1
scaffold_28	retained_intron	233915	233981	+	asmbl_37952,asmbl_37953	none	STRG.29233.2,STRG.29233.3	2	STRG.29233.1,blat.proc3829885.chain_2387,blat.proc3829885.chain_2388,blat.proc3829885.chain_2391	4
scaffold_25	starts_in_intron	5557096	5557096	-	asmbl_34239	none	STRG.27437.2,blat.proc3829901.chain_757	2	STRG.27437.1,STRG.27437.3,blat.proc3829901.chain_756	3
scaffold_12	alt_donor	14903735	14903736	+	asmbl_9060	none	STRG.15267.2,blat.proc3829877.chain_3651	2	STRG.15267.1,blat.proc3829877.chain_3652	2
scaffold_16	skipped_exon	5959143	5960591	+	asmbl_17040	none	blat.proc3829881.chain_166	1	STRG.19319.3	1
scaffold_11	spliced_intron	13256116	13256322	+	asmbl_6020	none	STRG.14184.3	1	STRG.14184.1,blat.proc3829877.chain_2654	2
scaffold_2	retained_intron	7241458	7241554	+	asmbl_24586,asmbl_24587,asmbl_24588	none	blat.proc3829871.chain_2165,blat.proc3829871.chain_2166,blat.proc3829871.chain_2168	3	STRG.2061.1,blat.proc3829871.chain_2164,blat.proc3829871.chain_2169,blat.proc3829871.chain_2170,blat.proc3829871.chain_2171	5
scaffold_23	skipped_exon	7661718	7664117	+	asmbl_31002	none	blat.proc3829883.chain_2933	1	blat.proc3829883.chain_2932	1
scaffold_13	alternate_exon	8895829	8895935	-	asmbl_9954	none	STRG.16142.1,blat.proc3829895.chain_918	2	STRG.16142.2	1
scaffold_2	ends_in_intron	18916322	18916322	-	asmbl_23851,asmbl_23852	none	Trinity_GG_18545_c0_g1_i1,Trinity_GG_18545_c0_g1_i2,blat.proc3829887.chain_2597,blat.proc3829887.chain_2599	4	STRG.2765.1,STRG.2765.2,Trinity_GG_18545_c0_g1_i3,Trinity_GG_18545_c0_g1_i4,blat.proc3829887.chain_2598,blat.proc3829887.chain_2600	6
scaffold_1	retained_intron	5743594	5743804	+	asmbl_1774	none	Trinity_GG_206_c0_g1_i1,blat.proc3829871.chain_349	2	STRG.371.1,Trinity_GG_206_c0_g1_i2,blat.proc3829871.chain_348	3
scaffold_28	alternate_exon	4240533	4241892	+	asmbl_38223	none	STRG.29590.2	1	STRG.29590.1	1
scaffold_20	retained_intron	1490221	1490256	+	asmbl_25573,asmbl_25574	none	STRG.22855.1,STRG.22855.5	2	STRG.22855.2,STRG.22855.3	2
scaffold_5	starts_in_intron	6737582	6737582	-	asmbl_45523	none	Trinity_GG_20424_c0_g2_i1,blat.proc3829889.chain_2157	2	STRG.6075.1,Trinity_GG_20424_c0_g1_i4,blat.proc3829889.chain_2156	3
scaffold_6	alt_donor	2758883	2758884	+	asmbl_46718	none	STRG.7264.2	1	STRG.7264.4	1
scaffold_6	starts_in_intron	10890737	10890737	+	asmbl_47239	none	Trinity_GG_4324_c0_g1_i1,blat.proc3829875.chain_266	2	STRG.7899.1,blat.proc3829875.chain_267	2
scaffold_20	spliced_intron	8129531	8130806	+	asmbl_25902	none	blat.proc3829883.chain_338	1	STRG.23344.1,Trinity_GG_12816_c0_g1_i1,Trinity_GG_12816_c0_g1_i3,Trinity_GG_12816_c1_g1_i1,blat.proc3829883.chain_339,blat.proc3829883.chain_340,blat.proc3829883.chain_341	7
scaffold_12	retained_intron	7773480	7773656	+	asmbl_8760	none	STRG.14842.1,blat.proc3829877.chain_3349	2	STRG.14842.2,blat.proc3829877.chain_3351	2
scaffold_4	retained_intron	13075747	13075881	+	asmbl_43108,asmbl_43109,asmbl_43110,asmbl_43111,asmbl_43113,asmbl_43114	none	STRG.4945.1,STRG.4945.2,STRG.4945.3,STRG.4945.4,blat.proc3829873.chain_1237,blat.proc3829873.chain_1238,blat.proc3829873.chain_1239,blat.proc3829873.chain_1240	8	STRG.4945.5	1
scaffold_5	skipped_exon	14679462	14680588	+	asmbl_44623	none	STRG.6663.2,Trinity_GG_3607_c0_g1_i1,blat.proc3829873.chain_2740	3	STRG.6663.1,Trinity_GG_3607_c0_g1_i4,blat.proc3829873.chain_2739	3
scaffold_14	spliced_intron	4782236	4782441	-	asmbl_13051,asmbl_13052,asmbl_13055	none	STRG.16995.1,STRG.16995.3,blat.proc3829895.chain_1702,blat.proc3829895.chain_1703	4	STRG.16995.2,STRG.16995.4	2
scaffold_2	alt_acceptor	15650761	15650762	-	asmbl_23660	none	STRG.2515.2	1	STRG.2515.1,blat.proc3829887.chain_2369	2
scaffold_10	skipped_exon	5848183	5849222	-	asmbl_3309	none	STRG.12395.1	1	STRG.12395.2,STRG.12395.3,blat.proc3829893.chain_857,blat.proc3829893.chain_858,blat.proc3829893.chain_859	5
scaffold_8	starts_in_intron	17493958	17493958	+	asmbl_52480	none	blat.proc3829875.chain_3153	1	STRG.10668.1,STRG.10668.2,STRG.10668.3,STRG.10668.4,Trinity_GG_5917_c0_g1_i2,blat.proc3829875.chain_3152,blat.proc3829875.chain_3155,blat.proc3829875.chain_3156,blat.proc3829875.chain_3157,blat.proc3829875.chain_3158	10
scaffold_6	alt_donor	10898532	10898533	+	asmbl_47240,asmbl_47241	none	STRG.7901.1,STRG.7901.2,blat.proc3829875.chain_290,blat.proc3829875.chain_292	4	Trinity_GG_4335_c0_g1_i1,blat.proc3829875.chain_288	2
scaffold_2	spliced_intron	16401404	16401522	+	asmbl_25166,asmbl_25167	none	STRG.2579.1,STRG.2579.2,Trinity_GG_1460_c0_g1_i4,blat.proc3829871.chain_2772,blat.proc3829871.chain_2773	5	STRG.2579.3	1
scaffold_14	skipped_exon	3550295	3551903	-	asmbl_13003	none	STRG.16931.2,blat.proc3829895.chain_1640	2	STRG.16931.1,STRG.16931.3,blat.proc3829895.chain_1641	3
scaffold_19	starts_in_intron	12480120	12480120	-	asmbl_21699	none	STRG.22565.3	1	STRG.22565.1	1
scaffold_11	alt_acceptor	3497227	3497228	+	asmbl_5398,asmbl_5402	none	STRG.13472.2,blat.proc3829877.chain_1902	2	STRG.13472.4	1
scaffold_3	starts_in_intron	18754751	18754751	+	asmbl_40704	none	STRG.4059.2	1	STRG.4059.1	1
scaffold_23	alternate_exon	5617855	5617919	-	asmbl_31649	none	STRG.25917.1	1	STRG.25917.2,STRG.25917.3,STRG.25917.4,Trinity_GG_31507_c0_g2_i3,blat.proc3829899.chain_3024,blat.proc3829899.chain_3025,blat.proc3829899.chain_3026,blat.proc3829899.chain_3027	8
scaffold_16	starts_in_intron	11956185	11956185	+	asmbl_17425	none	Trinity_GG_10782_c0_g1_i2,blat.proc3829881.chain_543	2	STRG.19713.1,Trinity_GG_10782_c0_g1_i1,blat.proc3829881.chain_544	3
scaffold_1	alt_acceptor	12449056	12449057	+	asmbl_2203	none	STRG.856.1,Trinity_GG_494_c0_g1_i8,blat.proc3829871.chain_881,blat.proc3829871.chain_888	4	STRG.856.3,Trinity_GG_494_c0_g1_i3,Trinity_GG_494_c0_g1_i6,blat.proc3829871.chain_882,blat.proc3829871.chain_887	5
scaffold_20	alt_donor	12074888	12074889	-	asmbl_27144	none	blat.proc3829899.chain_692	1	blat.proc3829899.chain_691	1
scaffold_21	alt_acceptor	10973074	10973075	+	asmbl_28914	none	STRG.24558.2	1	STRG.24558.1	1
scaffold_6	spliced_intron	8878330	8878408	-	asmbl_48529	none	STRG.7758.1,blat.proc3829891.chain_7	2	blat.proc3829891.chain_8	1
scaffold_5	spliced_intron	9711804	9711983	+	asmbl_44299	none	STRG.6273.2,blat.proc3829873.chain_2439	2	blat.proc3829873.chain_2438	1
scaffold_6	retained_intron	7936991	7937111	-	asmbl_48447,asmbl_48450	none	blat.proc3829889.chain_3703,blat.proc3829889.chain_3706	2	STRG.7666.1,STRG.7666.2,STRG.7666.4,blat.proc3829889.chain_3701,blat.proc3829889.chain_3702,blat.proc3829889.chain_3704,blat.proc3829889.chain_3705	7
scaffold_21	starts_in_intron	11273118	11273118	-	asmbl_28142	none	blat.proc3829899.chain_1692	1	STRG.24588.1,STRG.24588.2,blat.proc3829899.chain_1688,blat.proc3829899.chain_1689,blat.proc3829899.chain_1691,blat.proc3829899.chain_1695	6
scaffold_5	spliced_intron	10854006	10854093	+	asmbl_44366,asmbl_44368,asmbl_44371,asmbl_44372	none	STRG.6350.1,STRG.6350.3,blat.proc3829873.chain_2512,blat.proc3829873.chain_2513,blat.proc3829873.chain_2515	5	STRG.6350.4,blat.proc3829873.chain_2511,blat.proc3829873.chain_2516	3
scaffold_13	starts_in_intron	7656254	7656254	+	asmbl_11047	none	Trinity_GG_8822_c0_g1_i3,blat.proc3829879.chain_776	2	STRG.16039.1,blat.proc3829879.chain_775,blat.proc3829879.chain_778,blat.proc3829879.chain_779,blat.proc3829879.chain_780,blat.proc3829879.chain_781	6
scaffold_87	alt_donor	14160	14161	+	asmbl_53703	none	STRG.30139.3	1	STRG.30139.5,STRG.30139.6	2
scaffold_19	retained_intron	12822377	12822631	-	asmbl_21758	none	blat.proc3829897.chain_3277	1	STRG.22593.1,STRG.22593.2,STRG.22593.3,blat.proc3829897.chain_3274,blat.proc3829897.chain_3275,blat.proc3829897.chain_3278,blat.proc3829897.chain_3279	7
scaffold_15	alternate_exon	15379436	15381535	-	asmbl_15786	none	STRG.18916.1,blat.proc3829895.chain_3685	2	STRG.18916.2,blat.proc3829895.chain_3686	2
scaffold_12	spliced_intron	14123203	14123414	-	asmbl_8120,asmbl_8122	none	STRG.15232.1,blat.proc3829893.chain_3709	2	STRG.15232.2,Trinity_GG_25557_c0_g1_i2,blat.proc3829893.chain_3706,blat.proc3829893.chain_3707	4
scaffold_23	alt_acceptor	1136535	1136536	-	asmbl_31344,asmbl_31346,asmbl_31348	none	STRG.25575.1,blat.proc3829899.chain_2599,blat.proc3829899.chain_2601,blat.proc3829899.chain_2603	4	STRG.25575.2,blat.proc3829899.chain_2600	2
scaffold_14	alt_donor	926446	926447	+	asmbl_11757	none	STRG.16746.2	1	STRG.16746.1,Trinity_GG_9212_c0_g1_i1	2
scaffold_10	starts_in_intron	9375817	9375817	+	asmbl_4652	none	blat.proc3829877.chain_1200	1	STRG.12680.1,blat.proc3829877.chain_1199	2
scaffold_5	ends_in_intron	18561302	18561302	+	asmbl_44924,asmbl_44925	none	Trinity_GG_3847_c0_g1_i2,Trinity_GG_3847_c0_g1_i4,blat.proc3829873.chain_3145,blat.proc3829873.chain_3148	4	STRG.6978.1,STRG.6978.2,STRG.6978.4,blat.proc3829873.chain_3147	4
scaffold_7	retained_intron	12437710	12437791	+	asmbl_51145	none	blat.proc3829875.chain_1796	1	STRG.9337.1,STRG.9337.2,blat.proc3829875.chain_1797	3
scaffold_19	retained_intron	13007510	13007842	+	asmbl_22646	none	Trinity_GG_12510_c0_g1_i12,blat.proc3829881.chain_3580	2	STRG.22609.1,Trinity_GG_12510_c0_g1_i4,Trinity_GG_12510_c0_g1_i5,Trinity_GG_12510_c0_g1_i6,Trinity_GG_12510_c0_g1_i8,blat.proc3829881.chain_3576,blat.proc3829881.chain_3577,blat.proc3829881.chain_3579,blat.proc3829881.chain_3584	9
scaffold_7	alt_acceptor	6878337	6878338	+	asmbl_50759	none	STRG.8936.2	1	STRG.8936.1	1
scaffold_5	alt_acceptor	13235104	13235105	+	asmbl_44536,asmbl_44538	none	STRG.6553.2,STRG.6553.3,blat.proc3829873.chain_2685	3	STRG.6553.1,blat.proc3829873.chain_2683	2
scaffold_2	alt_donor	19771808	19771809	+	asmbl_25319	none	blat.proc3829871.chain_2983	1	STRG.2825.1,STRG.2825.2,blat.proc3829871.chain_2984,blat.proc3829871.chain_2985	4
scaffold_14	alternate_exon	9299976	9305806	-	asmbl_13352,asmbl_13353,asmbl_13356	none	STRG.17324.1,STRG.17324.3,blat.proc3829895.chain_2044,blat.proc3829895.chain_2047,blat.proc3829895.chain_2049,blat.proc3829895.chain_2052	6	STRG.17324.2,STRG.17324.4,blat.proc3829895.chain_2046,blat.proc3829895.chain_2048,blat.proc3829895.chain_2050,blat.proc3829895.chain_2051	6
scaffold_26	starts_in_intron	5363712	5363712	+	asmbl_35510	none	blat.proc3829885.chain_1200	1	STRG.28223.1,blat.proc3829885.chain_1199	2
scaffold_6	spliced_intron	14900185	14900520	+	asmbl_47585	none	STRG.8258.3,blat.proc3829875.chain_678	2	STRG.8258.2,Trinity_GG_4552_c0_g1_i1,Trinity_GG_4552_c0_g1_i4,blat.proc3829875.chain_676,blat.proc3829875.chain_677	5
scaffold_18	retained_exon	1754139	1754256	-	asmbl_19677,asmbl_19679	none	STRG.21056.1,blat.proc3829897.chain_1944,blat.proc3829897.chain_1946	3	blat.proc3829897.chain_1945	1
scaffold_2	alt_acceptor	14153349	14153350	+	asmbl_24917	none	STRG.2409.2	1	STRG.2409.1,blat.proc3829871.chain_2575	2
scaffold_4	retained_intron	5653238	5653334	-	asmbl_41352,asmbl_41354,asmbl_41358,asmbl_41365,asmbl_41366,asmbl_41369	none	STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_604,blat.proc3829889.chain_608,blat.proc3829889.chain_611	6	STRG.4469.1,blat.proc3829889.chain_603,blat.proc3829889.chain_606,blat.proc3829889.chain_612,blat.proc3829889.chain_613	5
scaffold_2	spliced_intron	6766206	6766429	+	asmbl_24517,asmbl_24520,asmbl_24521,asmbl_24522,asmbl_24526	none	STRG.2035.1,Trinity_GG_1102_c0_g1_i1,Trinity_GG_1102_c0_g1_i11,Trinity_GG_1102_c0_g1_i2,Trinity_GG_1102_c0_g1_i5,Trinity_GG_1102_c0_g1_i7,blat.proc3829871.chain_2005,blat.proc3829871.chain_2008,blat.proc3829871.chain_2010,blat.proc3829871.chain_2011,blat.proc3829871.chain_2012	11	Trinity_GG_1102_c0_g1_i8,blat.proc3829871.chain_2009	2
scaffold_22	ends_in_intron	6131013	6131013	+	asmbl_29390	none	blat.proc3829883.chain_2008	1	STRG.24955.3,blat.proc3829883.chain_2009,blat.proc3829883.chain_2010	3
scaffold_1	alt_donor	22133297	22133298	+	asmbl_2672	none	STRG.1479.3	1	STRG.1479.2,Trinity_GG_848_c1_g2_i1,blat.proc3829871.chain_1517	3
scaffold_25	starts_in_intron	6813579	6813579	+	asmbl_33649	none	blat.proc3829885.chain_566	1	STRG.27532.1,blat.proc3829885.chain_567	2
scaffold_23	starts_in_intron	4950204	4950204	+	asmbl_30839	none	Trinity_GG_14281_c0_g1_i5,blat.proc3829883.chain_2755	2	STRG.25865.1,Trinity_GG_14281_c0_g1_i3,blat.proc3829883.chain_2757	3
scaffold_14	alt_acceptor	11665989	11665990	-	asmbl_13497	none	STRG.17495.1,blat.proc3829895.chain_2185	2	STRG.17495.2,blat.proc3829895.chain_2184,blat.proc3829895.chain_2186,blat.proc3829895.chain_2187	4
scaffold_1	alternate_exon	4874449	4874710	-	asmbl_225	none	STRG.296.2	1	STRG.296.1	1
scaffold_15	retained_intron	6793556	6793655	-	asmbl_15273	none	STRG.18288.1,blat.proc3829895.chain_3046	2	STRG.18288.2,blat.proc3829895.chain_3044	2
scaffold_26	spliced_intron	5486047	5487189	+	asmbl_35525,asmbl_35528	none	STRG.28241.1,STRG.28241.2,Trinity_GG_15567_c0_g1_i5,Trinity_GG_15567_c0_g1_i7,Trinity_GG_15567_c0_g1_i8,blat.proc3829885.chain_1185,blat.proc3829885.chain_1187	7	Trinity_GG_15567_c0_g1_i4,blat.proc3829885.chain_1186,blat.proc3829885.chain_1189	3
scaffold_10	spliced_intron	16475883	16476026	-	asmbl_3910	none	STRG.13105.3	1	STRG.13105.2,Trinity_GG_24363_c0_g1_i1,blat.proc3829893.chain_1614	3
scaffold_19	skipped_exon	12972587	12973050	-	asmbl_21787,asmbl_21788,asmbl_21790,asmbl_21792	none	STRG.22606.1,STRG.22606.4,Trinity_GG_29578_c0_g1_i2,Trinity_GG_29578_c0_g1_i4,Trinity_GG_29578_c0_g1_i8,blat.proc3829897.chain_3320,blat.proc3829897.chain_3323,blat.proc3829897.chain_3324	8	STRG.22606.2,Trinity_GG_29578_c0_g1_i1,Trinity_GG_29578_c0_g1_i6,Trinity_GG_29578_c0_g1_i7,blat.proc3829897.chain_3318,blat.proc3829897.chain_3322,blat.proc3829897.chain_3325	7
scaffold_17	retained_exon	9033136	9033165	-	asmbl_19188,asmbl_19189,asmbl_19191	none	STRG.20520.1,STRG.20520.3,STRG.20520.5	3	STRG.20520.4,STRG.20520.6	2
scaffold_19	retained_intron	3207630	3207699	+	asmbl_22109	none	STRG.22001.3,blat.proc3829881.chain_2955	2	STRG.22001.2,blat.proc3829881.chain_2953	2
scaffold_28	alternate_exon	3007248	3008279	-	asmbl_37447	none	STRG.29479.1,blat.proc3829901.chain_2601	2	Trinity_GG_33537_c0_g1_i2	1
scaffold_3	spliced_intron	7286007	7286114	-	asmbl_38912	none	STRG.3325.1,blat.proc3829887.chain_3069	2	STRG.3325.2,STRG.3325.3,blat.proc3829887.chain_3070,blat.proc3829887.chain_3071	4
scaffold_16	spliced_intron	3707062	3707156	+	asmbl_16936,asmbl_16939,asmbl_16940	none	STRG.19166.1,blat.proc3829881.chain_33,blat.proc3829881.chain_35,blat.proc3829881.chain_36	4	Trinity_GG_10516_c0_g1_i4,blat.proc3829881.chain_37	2
scaffold_21	alt_donor	1286083	1286084	-	asmbl_27428	none	STRG.23793.1,Trinity_GG_30267_c0_g1_i1,blat.proc3829899.chain_863	3	STRG.23793.2	1
scaffold_5	ends_in_intron	15675070	15675070	+	asmbl_44668	none	Trinity_GG_3674_c0_g1_i3,blat.proc3829873.chain_2841	2	STRG.6754.1,blat.proc3829873.chain_2840,blat.proc3829873.chain_2842	3
scaffold_4	starts_in_intron	7649287	7649287	+	asmbl_42844	none	Trinity_GG_2551_c0_g1_i3,blat.proc3829873.chain_975	2	STRG.4593.1,Trinity_GG_2551_c0_g1_i2,blat.proc3829873.chain_976	3
scaffold_13	retained_exon	2977431	2977565	-	asmbl_9457	none	STRG.15584.1,blat.proc3829895.chain_363	2	STRG.15584.3	1
scaffold_8	retained_intron	15733421	15733539	+	asmbl_52410	none	Trinity_GG_5832_c0_g1_i2,blat.proc3829875.chain_2995	2	STRG.10571.1,Trinity_GG_5832_c0_g1_i1,Trinity_GG_5832_c0_g1_i3,blat.proc3829875.chain_2994,blat.proc3829875.chain_2996	5
scaffold_11	spliced_intron	11641641	11641750	+	asmbl_5946,asmbl_5949,asmbl_5950,asmbl_5952,asmbl_5953	none	STRG.14080.1,blat.proc3829877.chain_2568,blat.proc3829877.chain_2570,blat.proc3829877.chain_2572,blat.proc3829877.chain_2573,blat.proc3829877.chain_2574	6	Trinity_GG_7765_c0_g1_i3,blat.proc3829877.chain_2569	2
scaffold_4	spliced_intron	5444968	5445072	-	asmbl_41342	none	STRG.4440.2,blat.proc3829889.chain_569	2	STRG.4440.1,blat.proc3829889.chain_570	2
scaffold_28	retained_intron	9441074	9441164	-	asmbl_37842	none	blat.proc3829901.chain_3079	1	STRG.29952.1	1
scaffold_9	alternate_exon	11851239	11852142	-	asmbl_55301	none	STRG.11492.1,blat.proc3829891.chain_3611	2	blat.proc3829891.chain_3610	1
scaffold_1	alternate_exon	6310459	6310603	+	asmbl_1816	none	STRG.430.1,blat.proc3829871.chain_480	2	STRG.430.2	1
scaffold_17	retained_intron	1602805	1602948	+	asmbl_17747	none	blat.proc3829881.chain_823	1	STRG.19983.1,blat.proc3829881.chain_822	2
scaffold_14	alt_donor	8399511	8399512	-	asmbl_13286,asmbl_13289	none	STRG.17262.1,blat.proc3829895.chain_1979	2	STRG.17262.2,STRG.17262.3,blat.proc3829895.chain_1981,blat.proc3829895.chain_1982	4
scaffold_18	retained_exon	9169889	9170255	+	asmbl_20903	none	STRG.21549.1,Trinity_GG_11916_c0_g1_i3,blat.proc3829881.chain_2539	3	STRG.21549.2,STRG.21549.3,Trinity_GG_11916_c0_g1_i2,blat.proc3829881.chain_2540	4
scaffold_3	starts_in_intron	14184321	14184321	-	asmbl_39278	none	Trinity_GG_19089_c0_g1_i3	1	STRG.3759.1,STRG.3759.2,STRG.3759.3,STRG.3759.4,STRG.3759.5,Trinity_GG_19089_c0_g1_i5,blat.proc3829887.chain_3542,blat.proc3829887.chain_3546	8
scaffold_2	spliced_intron	4578467	4578717	+	asmbl_24386	none	STRG.1884.3	1	STRG.1884.1,Trinity_GG_1044_c1_g1_i3,blat.proc3829871.chain_1914	3
scaffold_2	spliced_intron	9789776	9789962	+	asmbl_24720,asmbl_24723,asmbl_24725,asmbl_24726	none	STRG.2185.1,blat.proc3829871.chain_2217,blat.proc3829871.chain_2219,blat.proc3829871.chain_2221,blat.proc3829871.chain_2222	5	blat.proc3829871.chain_2216,blat.proc3829871.chain_2220	2
scaffold_4	starts_in_intron	4097192	4097192	+	asmbl_42550	none	blat.proc3829873.chain_641	1	STRG.4313.1,STRG.4313.2,STRG.4313.3,STRG.4313.4,blat.proc3829873.chain_631,blat.proc3829873.chain_632,blat.proc3829873.chain_634,blat.proc3829873.chain_635,blat.proc3829873.chain_636,blat.proc3829873.chain_639	10
scaffold_16	skipped_exon	7240374	7243239	-	asmbl_16344,asmbl_16347,asmbl_16350,asmbl_16355	none	STRG.19382.1,STRG.19382.3,STRG.19382.7,STRG.19382.8	4	STRG.19382.6	1
scaffold_4	alternate_exon	5031567	5033785	-	asmbl_41290	none	STRG.4398.2	1	Trinity_GG_19486_c0_g2_i1,blat.proc3829889.chain_531	2
scaffold_3	starts_in_intron	11306688	11306688	-	asmbl_39099	none	blat.proc3829887.chain_3326	1	STRG.3555.1,blat.proc3829887.chain_3324,blat.proc3829887.chain_3325	3
scaffold_12	alt_donor	9972985	9972986	-	asmbl_7833	none	STRG.14954.1,Trinity_GG_25333_c0_g1_i3,blat.proc3829893.chain_3318	3	STRG.14954.2,Trinity_GG_25333_c0_g1_i6,blat.proc3829893.chain_3317	3
scaffold_3	alternate_exon	14353755	14353827	-	asmbl_39312	none	STRG.3772.2,Trinity_GG_19096_c0_g1_i1,blat.proc3829887.chain_3559	3	STRG.3772.1,blat.proc3829887.chain_3558	2
scaffold_13	alternate_exon	6140071	6147252	-	asmbl_9734	none	STRG.15904.2,Trinity_GG_25956_c1_g1_i1,blat.proc3829895.chain_672	3	STRG.15904.1,Trinity_GG_25956_c0_g1_i3,blat.proc3829895.chain_671	3
scaffold_17	retained_exon	8605674	8605727	-	asmbl_19151	none	STRG.20461.1,Trinity_GG_28522_c1_g2_i1,blat.proc3829897.chain_1430	3	STRG.20461.2,Trinity_GG_28522_c1_g1_i1,blat.proc3829897.chain_1429	3
scaffold_11	alt_donor	6658805	6658806	-	asmbl_6710	none	STRG.13702.1,blat.proc3829893.chain_2158	2	STRG.13702.2,STRG.13702.3,Trinity_GG_24688_c0_g1_i1,blat.proc3829893.chain_2159	4
scaffold_9	skipped_exon	13606570	13608048	+	asmbl_54486	none	STRG.11636.2,blat.proc3829877.chain_426	2	STRG.11636.1,blat.proc3829877.chain_428	2
scaffold_1	starts_in_intron	6220271	6220271	-	asmbl_332	none	blat.proc3829887.chain_284	1	STRG.413.1,blat.proc3829887.chain_283	2
scaffold_5	spliced_intron	5738215	5738534	+	asmbl_44027	none	STRG.5984.4	1	STRG.5984.1,STRG.5984.2,blat.proc3829873.chain_2047	3
scaffold_27	alt_acceptor	9099751	9099752	+	asmbl_36458,asmbl_36459	none	blat.proc3829885.chain_2318,blat.proc3829885.chain_2319	2	blat.proc3829885.chain_2320	1
scaffold_24	alt_acceptor	420729	420730	+	asmbl_32018	none	STRG.26311.2	1	STRG.26311.1,blat.proc3829883.chain_3233	2
scaffold_13	starts_in_intron	3611366	3611366	-	asmbl_9519	none	blat.proc3829895.chain_339	1	STRG.15665.2,blat.proc3829895.chain_341,blat.proc3829895.chain_342	3
scaffold_7	spliced_intron	9311727	9311873	+	asmbl_50958,asmbl_50959	none	STRG.9133.1,Trinity_GG_5081_c0_g1_i1,Trinity_GG_5081_c0_g1_i2,blat.proc3829875.chain_1611,blat.proc3829875.chain_1612	5	blat.proc3829875.chain_1610	1
scaffold_23	starts_in_intron	1605696	1605696	+	asmbl_30654,asmbl_30655	none	blat.proc3829883.chain_2536,blat.proc3829883.chain_2537	2	STRG.25619.1,blat.proc3829883.chain_2538	2
scaffold_2	retained_intron	5716839	5716996	+	asmbl_24458	none	STRG.1962.3,Trinity_GG_1056_c0_g2_i1,blat.proc3829871.chain_1940	3	STRG.1962.1,STRG.1962.2,blat.proc3829871.chain_1938	3
scaffold_1	alt_donor	4226072	4226073	+	asmbl_1640	none	blat.proc3829871.chain_307	1	STRG.249.2,blat.proc3829871.chain_308	2
scaffold_10	retained_exon	975308	975362	-	asmbl_2937,asmbl_2939	none	STRG.11970.1,Trinity_GG_23642_c0_g1_i1,Trinity_GG_23642_c0_g1_i2	3	STRG.11970.2,Trinity_GG_23642_c0_g1_i4	2
scaffold_16	retained_intron	10447527	10448352	+	asmbl_17335,asmbl_17336	none	STRG.19602.1,STRG.19602.3,Trinity_GG_10708_c1_g1_i1,blat.proc3829881.chain_427	4	STRG.19602.2	1
scaffold_20	alt_donor	9963622	9963623	-	asmbl_26992	none	STRG.23526.1	1	STRG.23526.2,Trinity_GG_30138_c1_g1_i3,blat.proc3829899.chain_552,blat.proc3829899.chain_553	4
scaffold_18	alt_donor	4729830	4729831	-	asmbl_19862	none	STRG.21257.1,blat.proc3829897.chain_2122	2	STRG.21257.2,blat.proc3829897.chain_2121	2
scaffold_11	starts_in_intron	4716439	4716439	+	asmbl_5464	none	Trinity_GG_7454_c0_g1_i1,blat.proc3829877.chain_2042	2	STRG.13545.1,STRG.13545.2,STRG.13545.3,blat.proc3829877.chain_2043	4
scaffold_17	starts_in_intron	8640704	8640704	-	asmbl_19156	none	blat.proc3829897.chain_1360	1	STRG.20469.1,blat.proc3829897.chain_1359	2
scaffold_10	retained_intron	17325221	17325630	-	asmbl_3954	none	STRG.13169.3,blat.proc3829893.chain_1572	2	STRG.13169.1,blat.proc3829893.chain_1573	2
scaffold_16	ends_in_intron	13948490	13948490	-	asmbl_16600	none	blat.proc3829897.chain_716	1	STRG.19780.1,STRG.19780.2,blat.proc3829897.chain_715	3
scaffold_3	alternate_exon	16147849	16148143	-	asmbl_39436	none	STRG.3900.3,blat.proc3829887.chain_3730	2	STRG.3900.2,blat.proc3829887.chain_3731	2
scaffold_18	spliced_intron	4308398	4308494	+	asmbl_20537	none	STRG.21210.1	1	STRG.21210.2	1
scaffold_10	starts_in_intron	15426965	15426965	+	asmbl_4962	none	blat.proc3829877.chain_1627	1	STRG.13051.1,STRG.13051.2	2
scaffold_15	ends_in_intron	14322705	14322705	-	asmbl_15729,asmbl_15736	none	STRG.18855.3,Trinity_GG_27599_c0_g1_i11	2	blat.proc3829895.chain_3603	1
scaffold_2	retained_intron	7827117	7827319	-	asmbl_23305	none	STRG.2079.3,Trinity_GG_18172_c0_g1_i1,blat.proc3829887.chain_1976	3	STRG.2079.1,Trinity_GG_18172_c0_g1_i2,blat.proc3829887.chain_1978	3
scaffold_11	alternate_exon	8896441	8897254	-	asmbl_6868	none	blat.proc3829893.chain_2309	1	STRG.13898.2	1
scaffold_6	skipped_exon	884795	886162	-	asmbl_48031	none	STRG.7153.3	1	STRG.7153.1,STRG.7153.2	2
scaffold_22	spliced_intron	1707174	1707269	-	asmbl_29910	none	STRG.24746.1,Trinity_GG_30839_c0_g1_i3,blat.proc3829899.chain_1868	3	STRG.24746.2,Trinity_GG_30839_c0_g1_i1,blat.proc3829899.chain_1870	3
scaffold_25	spliced_intron	6301207	6301328	+	asmbl_33606,asmbl_33607,asmbl_33614	none	blat.proc3829885.chain_465,blat.proc3829885.chain_469,blat.proc3829885.chain_470,blat.proc3829885.chain_472,blat.proc3829885.chain_474	5	STRG.27516.1,blat.proc3829885.chain_464,blat.proc3829885.chain_471,blat.proc3829885.chain_473	4
scaffold_18	starts_in_intron	6240014	6240014	-	asmbl_19925	none	STRG.21345.1,blat.proc3829897.chain_2232	2	STRG.21345.2	1
scaffold_1	alt_acceptor	10949744	10949745	+	asmbl_2030	none	blat.proc3829871.chain_750	1	STRG.713.1,blat.proc3829871.chain_751	2
scaffold_21	ends_in_intron	6711283	6711283	+	asmbl_28709	none	blat.proc3829883.chain_1344	1	STRG.24182.1,Trinity_GG_13405_c0_g1_i1,blat.proc3829883.chain_1343	3
scaffold_28	retained_intron	2811349	2811511	-	asmbl_37409,asmbl_37412,asmbl_37413	none	blat.proc3829901.chain_2492,blat.proc3829901.chain_2495,blat.proc3829901.chain_2496	3	blat.proc3829901.chain_2493	1
scaffold_4	starts_in_intron	4414581	4414581	+	asmbl_42575,asmbl_42584,asmbl_42587,asmbl_42588	none	Trinity_GG_2404_c0_g1_i10,blat.proc3829873.chain_680,blat.proc3829873.chain_686,blat.proc3829873.chain_690,blat.proc3829873.chain_698	5	STRG.4344.1,STRG.4344.2,STRG.4344.4,blat.proc3829873.chain_682,blat.proc3829873.chain_683,blat.proc3829873.chain_685,blat.proc3829873.chain_691,blat.proc3829873.chain_697	8
scaffold_9	ends_in_intron	8940699	8940699	-	asmbl_55117	none	blat.proc3829891.chain_3362	1	STRG.11268.1,STRG.11268.2,blat.proc3829891.chain_3360,blat.proc3829891.chain_3363,blat.proc3829891.chain_3364	5
scaffold_1	skipped_exon	18521817	18524432	-	asmbl_1116	none	STRG.1299.1,blat.proc3829887.chain_1158	2	STRG.1299.2,blat.proc3829887.chain_1159	2
scaffold_8	alt_acceptor	16386890	16386891	+	asmbl_52442	none	STRG.10611.1,Trinity_GG_5913_c0_g1_i4,blat.proc3829875.chain_3143	3	STRG.10611.2,STRG.10611.3,Trinity_GG_5913_c0_g1_i2,Trinity_GG_5913_c0_g1_i3,Trinity_GG_5913_c0_g1_i5,blat.proc3829875.chain_3141,blat.proc3829875.chain_3144,blat.proc3829875.chain_3145	8
scaffold_2	retained_intron	15266383	15266469	+	asmbl_25026,asmbl_25030	none	blat.proc3829871.chain_2518,blat.proc3829871.chain_2523	2	STRG.2480.1,STRG.2480.2,STRG.2480.3,Trinity_GG_1353_c0_g1_i14,blat.proc3829871.chain_2514,blat.proc3829871.chain_2515,blat.proc3829871.chain_2516,blat.proc3829871.chain_2517,blat.proc3829871.chain_2519,blat.proc3829871.chain_2520,blat.proc3829871.chain_2521,blat.proc3829871.chain_2522	12
scaffold_5	ends_in_intron	8788302	8788302	+	asmbl_44236	none	blat.proc3829873.chain_2348	1	STRG.6209.1,STRG.6209.2,blat.proc3829873.chain_2346,blat.proc3829873.chain_2349,blat.proc3829873.chain_2350	5
scaffold_2	starts_in_intron	4124787	4124787	-	asmbl_23079	none	blat.proc3829887.chain_1660	1	STRG.1854.1,blat.proc3829887.chain_1661	2
scaffold_13	retained_intron	4602251	4602712	-	asmbl_9602,asmbl_9609	none	STRG.15781.2,Trinity_GG_25880_c0_g1_i6,blat.proc3829895.chain_528,blat.proc3829895.chain_531	4	STRG.15781.1	1
scaffold_14	alt_acceptor	4154677	4154678	+	asmbl_11955,asmbl_11956,asmbl_11958,asmbl_11960	none	STRG.16957.1,STRG.16957.2,Trinity_GG_9341_c0_g1_i1,Trinity_GG_9341_c0_g1_i2	4	STRG.16957.3,Trinity_GG_9341_c0_g1_i4	2
scaffold_9	spliced_intron	6400017	6400100	+	asmbl_54080,asmbl_54081	none	STRG.11163.1,Trinity_GG_6211_c0_g1_i2,blat.proc3829875.chain_3632	3	STRG.11163.2,STRG.11163.3,Trinity_GG_6211_c0_g1_i4,blat.proc3829875.chain_3634	4
scaffold_2	spliced_intron	8055440	8055626	-	asmbl_23327,asmbl_23328	none	STRG.2095.2,blat.proc3829887.chain_2005,blat.proc3829887.chain_2009	3	STRG.2095.5,blat.proc3829887.chain_2007	2
scaffold_21	starts_in_intron	7914476	7914476	-	asmbl_27884	none	STRG.24311.2,blat.proc3829899.chain_1284	2	STRG.24311.1,blat.proc3829899.chain_1283	2
scaffold_3	starts_in_intron	15929814	15929814	-	asmbl_39404,asmbl_39407	none	STRG.3872.2,blat.proc3829887.chain_3676	2	STRG.3872.1,blat.proc3829887.chain_3677,blat.proc3829887.chain_3678	3
scaffold_23	retained_intron	2164335	2164790	-	asmbl_31421	none	STRG.25669.2	1	STRG.25669.3	1
scaffold_20	skipped_exon	11948483	11948717	-	asmbl_27135,asmbl_27136	none	blat.proc3829899.chain_605,blat.proc3829899.chain_606	2	blat.proc3829899.chain_603	1
scaffold_15	retained_exon	11143710	11143790	-	asmbl_15501,asmbl_15503	none	blat.proc3829895.chain_3286,blat.proc3829895.chain_3288	2	blat.proc3829895.chain_3283,blat.proc3829895.chain_3287,blat.proc3829895.chain_3289	3
scaffold_27	starts_in_intron	4508797	4508797	+	asmbl_36258	none	blat.proc3829885.chain_2011	1	STRG.28883.1,STRG.28883.2,Trinity_GG_15998_c0_g1_i4,blat.proc3829885.chain_2013,blat.proc3829885.chain_2014	5
scaffold_7	alt_acceptor	4043305	4043306	-	asmbl_49659	none	STRG.8792.2	1	STRG.8792.1,blat.proc3829891.chain_1148	2
scaffold_24	retained_intron	7864239	7864383	-	asmbl_33062	none	STRG.26822.1,blat.proc3829901.chain_131	2	STRG.26822.2,blat.proc3829901.chain_132	2
scaffold_26	retained_intron	6721964	6722078	+	asmbl_35634	none	STRG.28354.2,blat.proc3829885.chain_1285	2	STRG.28354.3	1
scaffold_8	skipped_exon	2851215	2851882	-	asmbl_52711	none	STRG.9800.2,blat.proc3829891.chain_1949	2	STRG.9800.1,blat.proc3829891.chain_1947,blat.proc3829891.chain_1948	3
scaffold_15	alt_acceptor	11402043	11402044	-	asmbl_15512	none	STRG.18596.3,blat.proc3829895.chain_3375	2	STRG.18596.5,blat.proc3829895.chain_3374	2
scaffold_10	spliced_intron	11968331	11968370	+	asmbl_4793	none	STRG.12832.1	1	Trinity_GG_7032_c2_g1_i1,blat.proc3829877.chain_1325	2
scaffold_1	alternate_exon	12746050	12748713	-	asmbl_760	none	STRG.892.5	1	STRG.892.3,STRG.892.4,blat.proc3829887.chain_755	3
scaffold_20	starts_in_intron	4374527	4374527	+	asmbl_25736	none	Trinity_GG_12759_c0_g1_i2,blat.proc3829883.chain_250	2	STRG.23107.1,STRG.23107.2,blat.proc3829883.chain_248	3
scaffold_26	retained_intron	902566	902678	+	asmbl_35241	none	Trinity_GG_15392_c0_g1_i2,blat.proc3829885.chain_889	2	STRG.27880.1,STRG.27880.2,Trinity_GG_15392_c0_g1_i1,blat.proc3829885.chain_886,blat.proc3829885.chain_888	5
scaffold_19	alt_donor	11565932	11565933	-	asmbl_21637	none	STRG.22480.2	1	STRG.22480.1,blat.proc3829897.chain_3197	2
scaffold_21	alternate_exon	692285	692434	+	asmbl_28304,asmbl_28307	none	STRG.23742.3,STRG.23742.4,Trinity_GG_13161_c0_g1_i1	3	STRG.23742.1,STRG.23742.2	2
scaffold_21	starts_in_intron	6438816	6438816	+	asmbl_28663	none	Trinity_GG_13377_c1_g1_i2,blat.proc3829883.chain_1289	2	STRG.24150.1,blat.proc3829883.chain_1288	2
scaffold_11	retained_intron	6952071	6952149	-	asmbl_6724,asmbl_6725,asmbl_6726,asmbl_6727	none	STRG.13710.1,STRG.13710.3,blat.proc3829893.chain_2161,blat.proc3829893.chain_2162,blat.proc3829893.chain_2164,blat.proc3829893.chain_2165	6	STRG.13710.2,blat.proc3829893.chain_2163	2
scaffold_322	alt_acceptor	6499	6500	-	asmbl_40914,asmbl_40916	none	STRG.30256.2,STRG.30256.3	2	STRG.30256.1,STRG.30256.4	2
scaffold_13	alt_acceptor	10239635	10239636	-	asmbl_10017	none	STRG.16243.4	1	STRG.16243.1,STRG.16243.3,blat.proc3829895.chain_977	3
scaffold_7	spliced_intron	8508720	8510079	+	asmbl_50886	none	STRG.9068.4,blat.proc3829875.chain_1525	2	STRG.9068.2,STRG.9068.5,blat.proc3829875.chain_1526,blat.proc3829875.chain_1530	4
scaffold_14	retained_exon	6282857	6282910	+	asmbl_12034,asmbl_12035,asmbl_12037,asmbl_12040	none	STRG.17063.1,STRG.17063.2,STRG.17063.3,STRG.17063.5,blat.proc3829879.chain_1740,blat.proc3829879.chain_1741,blat.proc3829879.chain_1742,blat.proc3829879.chain_1744,blat.proc3829879.chain_1746	9	STRG.17063.4,blat.proc3829879.chain_1745	2
scaffold_15	retained_intron	4493112	4493215	+	asmbl_14086,asmbl_14087	none	STRG.18165.2,blat.proc3829879.chain_2750	2	STRG.18165.1,blat.proc3829879.chain_2746,blat.proc3829879.chain_2747,blat.proc3829879.chain_2748,blat.proc3829879.chain_2749	5
scaffold_25	skipped_exon	6437223	6438668	+	asmbl_33628	none	STRG.27506.3	1	STRG.27506.1,STRG.27506.2,blat.proc3829885.chain_534,blat.proc3829885.chain_535	4
scaffold_9	spliced_intron	11777566	11777728	+	asmbl_54362	none	STRG.11478.1	1	Trinity_GG_6374_c0_g1_i1,blat.proc3829877.chain_212	2
scaffold_5	retained_intron	12842443	12842549	+	asmbl_44497,asmbl_44500	none	STRG.6508.3,Trinity_GG_3545_c0_g1_i1,blat.proc3829873.chain_2642	3	STRG.6508.1,STRG.6508.2,Trinity_GG_3545_c0_g1_i3,blat.proc3829873.chain_2643	4
scaffold_3	alt_acceptor	8255933	8255934	+	asmbl_40166	none	STRG.3399.2	1	STRG.3399.1,Trinity_GG_1923_c0_g1_i1,Trinity_GG_1923_c0_g1_i2,blat.proc3829871.chain_3568,blat.proc3829871.chain_3569	5
scaffold_22	spliced_intron	7787082	7787160	-	asmbl_30188	none	STRG.25107.1,blat.proc3829899.chain_2187	2	STRG.25107.2,blat.proc3829899.chain_2186	2
scaffold_13	alternate_exon	11257854	11257923	+	asmbl_11245	none	STRG.16278.1	1	STRG.16278.2,blat.proc3829879.chain_992	2
scaffold_13	ends_in_intron	5809021	5809021	+	asmbl_10879	none	blat.proc3829879.chain_645	1	STRG.15880.1,STRG.15880.3,STRG.15880.4	3
scaffold_4	alternate_exon	19587131	19588397	-	asmbl_42205,asmbl_42206	none	STRG.5543.1,STRG.5543.2,blat.proc3829889.chain_1639,blat.proc3829889.chain_1641	4	STRG.5543.3,blat.proc3829889.chain_1640	2
scaffold_15	alternate_exon	15185471	15190203	+	asmbl_14679,asmbl_14680,asmbl_14681,asmbl_14686,asmbl_14688	none	blat.proc3829879.chain_3471,blat.proc3829879.chain_3472,blat.proc3829879.chain_3473,blat.proc3829879.chain_3480,blat.proc3829879.chain_3484	5	STRG.18906.4	1
scaffold_5	skipped_exon	823617	825278	+	asmbl_43765,asmbl_43767	none	STRG.5632.2,STRG.5632.3	2	STRG.5632.1	1
scaffold_7	retained_intron	15270953	15271287	+	asmbl_51311,asmbl_51313,asmbl_51317	none	STRG.9532.3,blat.proc3829875.chain_1981,blat.proc3829875.chain_1986	3	STRG.9532.1,blat.proc3829875.chain_1982	2
scaffold_1	starts_in_intron	8648611	8648611	-	asmbl_479	none	Trinity_GG_17313_c2_g1_i1,blat.proc3829887.chain_459	2	STRG.572.2,STRG.572.4,STRG.572.5	3
scaffold_5	retained_intron	18758399	18758711	-	asmbl_46251	none	blat.proc3829889.chain_2995	1	STRG.6996.1,blat.proc3829889.chain_2994	2
scaffold_10	alternate_exon	11198252	11198322	-	asmbl_3678	none	STRG.12776.2	1	STRG.12776.1,blat.proc3829893.chain_1304	2
scaffold_25	skipped_exon	5428517	5429201	+	asmbl_33565	none	blat.proc3829885.chain_455	1	STRG.27435.1,blat.proc3829885.chain_453	2
scaffold_19	ends_in_intron	13215481	13215481	-	asmbl_21826,asmbl_21834,asmbl_21835	none	Trinity_GG_29598_c1_g1_i10,Trinity_GG_29598_c1_g1_i4,Trinity_GG_29598_c1_g1_i7,blat.proc3829897.chain_3359,blat.proc3829897.chain_3366,blat.proc3829897.chain_3367	6	STRG.22682.1,blat.proc3829897.chain_3360,blat.proc3829897.chain_3361,blat.proc3829897.chain_3362,blat.proc3829897.chain_3363,blat.proc3829897.chain_3364,blat.proc3829897.chain_3368,blat.proc3829897.chain_3370	8
scaffold_39	starts_in_intron	31940	31940	-	asmbl_41021	none	blat.proc3829901.chain_3118	1	STRG.30019.1,STRG.30019.2,blat.proc3829901.chain_3119	3
scaffold_3	spliced_intron	13179330	13179422	+	asmbl_40387,asmbl_40390,asmbl_40391,asmbl_40392,asmbl_40395	none	STRG.3679.1,blat.proc3829873.chain_76,blat.proc3829873.chain_77,blat.proc3829873.chain_78,blat.proc3829873.chain_79,blat.proc3829873.chain_80	6	Trinity_GG_2066_c0_g1_i3,blat.proc3829873.chain_75	2
scaffold_7	alternate_exon	8316679	8323215	-	asmbl_49810	none	STRG.9058.4,Trinity_GG_22128_c5_g1_i1,blat.proc3829891.chain_1330	3	STRG.9058.2,STRG.9058.3,blat.proc3829891.chain_1326,blat.proc3829891.chain_1327	4
scaffold_11	starts_in_intron	13645187	13645187	+	asmbl_6046	none	blat.proc3829877.chain_2699	1	STRG.14213.1,blat.proc3829877.chain_2700	2
scaffold_1	retained_intron	16095601	16095749	-	asmbl_976	none	STRG.1128.2,blat.proc3829887.chain_1023	2	STRG.1128.1,blat.proc3829887.chain_1026	2
scaffold_6	alt_acceptor	878681	878682	+	asmbl_46636	none	STRG.7151.1	1	STRG.7151.3	1
scaffold_24	spliced_intron	7784554	7784674	-	asmbl_33050,asmbl_33051	none	blat.proc3829901.chain_125,blat.proc3829901.chain_126	2	blat.proc3829901.chain_127	1
scaffold_4	retained_intron	4095323	4095985	+	asmbl_42546,asmbl_42552,asmbl_42553	none	STRG.4313.2,blat.proc3829873.chain_632,blat.proc3829873.chain_634	3	STRG.4313.1,blat.proc3829873.chain_635	2
scaffold_11	alt_donor	7049578	7049579	+	asmbl_5610,asmbl_5613	none	STRG.13722.1,Trinity_GG_7553_c0_g1_i7,blat.proc3829877.chain_2194	3	STRG.13722.2,STRG.13722.3,Trinity_GG_7553_c0_g1_i3,Trinity_GG_7553_c0_g1_i8,blat.proc3829877.chain_2193,blat.proc3829877.chain_2196	6
scaffold_21	spliced_intron	7825384	7825604	-	asmbl_27879	none	STRG.24307.1,blat.proc3829899.chain_1289	2	blat.proc3829899.chain_1290	1
scaffold_14	ends_in_intron	150668	150668	-	asmbl_12764,asmbl_12765	none	STRG.16700.4,STRG.16700.5	2	STRG.16700.2,blat.proc3829895.chain_1383,blat.proc3829895.chain_1384,blat.proc3829895.chain_1385	4
scaffold_3	alt_donor	8091820	8091821	+	asmbl_40155	none	STRG.3385.1	1	STRG.3385.2,Trinity_GG_1890_c0_g1_i1,blat.proc3829871.chain_3515	3
scaffold_10	spliced_intron	6076482	6078706	-	asmbl_3349	none	blat.proc3829893.chain_919	1	STRG.12437.2,STRG.12437.3,STRG.12437.5,Trinity_GG_23966_c0_g2_i1,blat.proc3829893.chain_926	5
scaffold_18	alt_acceptor	178172	178173	+	asmbl_20294,asmbl_20297	none	STRG.20962.3,Trinity_GG_11535_c0_g1_i2,blat.proc3829881.chain_1816,blat.proc3829881.chain_1820	4	STRG.20962.1,STRG.20962.2,STRG.20962.4,Trinity_GG_11535_c0_g1_i6,blat.proc3829881.chain_1817,blat.proc3829881.chain_1818	6
scaffold_5	retained_exon	9711759	9711803	+	asmbl_44299	none	STRG.6273.2,blat.proc3829873.chain_2439	2	STRG.6273.1,blat.proc3829873.chain_2437	2
scaffold_25	retained_intron	6311971	6313061	-	asmbl_34322	none	Trinity_GG_32432_c0_g1_i4,blat.proc3829901.chain_826	2	STRG.27517.1	1
scaffold_19	alt_acceptor	6743708	6743709	+	asmbl_22244	none	STRG.22181.2,Trinity_GG_12216_c0_g1_i2,blat.proc3829881.chain_3042	3	STRG.22181.1,Trinity_GG_12216_c0_g1_i1,blat.proc3829881.chain_3041	3
scaffold_17	alt_donor	8317934	8317935	+	asmbl_18096,asmbl_18101	none	Trinity_GG_11211_c0_g1_i1,blat.proc3829881.chain_1249,blat.proc3829881.chain_1252	3	STRG.20443.1,STRG.20443.2,STRG.20443.3,blat.proc3829881.chain_1250,blat.proc3829881.chain_1251,blat.proc3829881.chain_1253	6
scaffold_14	alt_acceptor	10641389	10641390	+	asmbl_12317	none	STRG.17402.2	1	STRG.17402.1,blat.proc3829879.chain_2064	2
scaffold_11	alt_acceptor	4715399	4715400	+	asmbl_5463	none	STRG.13545.1,blat.proc3829877.chain_2043	2	STRG.13545.2,STRG.13545.3	2
scaffold_22	spliced_intron	225300	225479	-	asmbl_29836,asmbl_29837,asmbl_29838,asmbl_29839,asmbl_29842	none	STRG.24671.1,STRG.24671.2,STRG.24671.3,Trinity_GG_30815_c0_g1_i1,Trinity_GG_30815_c0_g1_i2,Trinity_GG_30815_c0_g1_i3,Trinity_GG_30815_c0_g1_i5,blat.proc3829899.chain_1813,blat.proc3829899.chain_1814,blat.proc3829899.chain_1815,blat.proc3829899.chain_1816	11	Trinity_GG_30815_c0_g1_i4,blat.proc3829899.chain_1812	2
scaffold_22	retained_intron	4404848	4404976	-	asmbl_30018	none	STRG.24843.1,blat.proc3829899.chain_1992	2	blat.proc3829899.chain_1994	1
scaffold_20	starts_in_intron	8151988	8151988	-	asmbl_26890	none	STRG.23349.1,blat.proc3829899.chain_410	2	STRG.23349.2,STRG.23349.3,blat.proc3829899.chain_409,blat.proc3829899.chain_411	4
scaffold_8	retained_intron	7482867	7483073	-	asmbl_52907	none	blat.proc3829891.chain_2152	1	STRG.10067.1,blat.proc3829891.chain_2150,blat.proc3829891.chain_2151	3
scaffold_24	retained_exon	6847764	6847781	-	asmbl_32979	none	STRG.26716.2,blat.proc3829901.chain_36	2	STRG.26716.1,blat.proc3829901.chain_35	2
scaffold_9	retained_exon	13607545	13607747	+	asmbl_54487	none	STRG.11636.1,blat.proc3829877.chain_428	2	STRG.11636.2,blat.proc3829877.chain_426	2
scaffold_26	retained_intron	9083581	9083738	-	asmbl_35036	none	STRG.28453.1,blat.proc3829901.chain_1598	2	STRG.28453.2,STRG.28453.4,blat.proc3829901.chain_1595	3
scaffold_8	starts_in_intron	7808695	7808695	-	asmbl_52916	none	blat.proc3829891.chain_2143	1	STRG.10090.1,blat.proc3829891.chain_2144,blat.proc3829891.chain_2145,blat.proc3829891.chain_2147	4
scaffold_23	skipped_exon	1850325	1851476	+	asmbl_30666	none	STRG.25646.1	1	STRG.25646.2,blat.proc3829883.chain_2557	2
scaffold_13	alt_acceptor	12244976	12244977	+	asmbl_11326	none	STRG.16345.3	1	STRG.16345.1,STRG.16345.2	2
scaffold_27	retained_exon	382928	383039	-	asmbl_36636	none	STRG.28547.4,blat.proc3829901.chain_1685	2	STRG.28547.2,blat.proc3829901.chain_1686	2
scaffold_9	spliced_intron	15746966	15746996	+	asmbl_54563	none	STRG.11753.2	1	STRG.11753.1,Trinity_GG_6563_c1_g1_i1,blat.proc3829877.chain_511	3
scaffold_15	spliced_intron	12621910	12622004	+	asmbl_14529	none	blat.proc3829879.chain_3315	1	STRG.18707.2,Trinity_GG_10271_c1_g1_i5,blat.proc3829879.chain_3317	3
scaffold_20	alt_donor	12072266	12072267	+	asmbl_26264	none	STRG.23690.2,blat.proc3829883.chain_786	2	STRG.23690.1,blat.proc3829883.chain_785	2
scaffold_5	starts_in_intron	13134547	13134547	-	asmbl_45902	none	blat.proc3829889.chain_2620	1	STRG.6546.1,blat.proc3829889.chain_2621	2
scaffold_12	retained_exon	1056754	1056810	+	asmbl_8418,asmbl_8421	none	STRG.14436.1,STRG.14436.4,blat.proc3829877.chain_2886	3	STRG.14436.3	1
scaffold_5	starts_in_intron	16646616	16646616	+	asmbl_44778	none	STRG.6846.3	1	STRG.6846.1,STRG.6846.2,blat.proc3829873.chain_2906,blat.proc3829873.chain_2908	4
scaffold_3	retained_intron	14424172	14424368	+	asmbl_40482	none	STRG.3785.3,Trinity_GG_2146_c0_g1_i5,blat.proc3829873.chain_231	3	STRG.3785.1,STRG.3785.2,Trinity_GG_2146_c0_g1_i2,Trinity_GG_2146_c0_g1_i3,blat.proc3829873.chain_229,blat.proc3829873.chain_230	6
scaffold_24	alternate_exon	10483049	10484016	+	asmbl_32570	none	STRG.26999.2	1	STRG.26999.1,STRG.26999.3,blat.proc3829885.chain_114,blat.proc3829885.chain_115	4
scaffold_17	starts_in_intron	3141594	3141594	-	asmbl_18845	none	blat.proc3829897.chain_997	1	STRG.20084.1,STRG.20084.2,blat.proc3829897.chain_996	3
scaffold_5	starts_in_intron	7740976	7740976	+	asmbl_44170	none	blat.proc3829873.chain_2301	1	STRG.6144.1,STRG.6144.2,STRG.6144.3,blat.proc3829873.chain_2302	4
scaffold_7	starts_in_intron	14932223	14932223	-	asmbl_50165	none	Trinity_GG_22355_c1_g1_i1,blat.proc3829891.chain_1755	2	STRG.9502.1,Trinity_GG_22355_c1_g1_i2,blat.proc3829891.chain_1754	3
scaffold_15	retained_intron	14891299	14891623	+	asmbl_14654,asmbl_14655	none	STRG.18890.1,blat.proc3829879.chain_3464,blat.proc3829879.chain_3465	3	STRG.18890.2,STRG.18890.3,Trinity_GG_10355_c0_g1_i7,blat.proc3829879.chain_3462	4
scaffold_7	ends_in_intron	1446553	1446553	-	asmbl_49548	none	Trinity_GG_21961_c0_g1_i2	1	STRG.8632.1,blat.proc3829891.chain_1033	2
scaffold_17	ends_in_intron	1087035	1087035	-	asmbl_18717	none	blat.proc3829897.chain_833	1	STRG.19938.1	1
scaffold_28	ends_in_intron	575515	575515	-	asmbl_37241,asmbl_37243	none	STRG.29265.2,blat.proc3829901.chain_2356	2	STRG.29265.1,blat.proc3829901.chain_2355,blat.proc3829901.chain_2357	3
scaffold_5	alt_acceptor	19146961	19146962	-	asmbl_46270	none	STRG.7015.1,blat.proc3829889.chain_3029	2	STRG.7015.2	1
scaffold_646	retained_intron	4845	4952	-	asmbl_49431	none	STRG.30390.2,blat.proc3829901.chain_3440	2	STRG.30390.1,blat.proc3829901.chain_3441	2
scaffold_23	retained_intron	2164596	2164823	-	asmbl_31421,asmbl_31422	none	STRG.25669.2,STRG.25669.4	2	STRG.25669.5,STRG.25669.7	2
scaffold_4	spliced_intron	17568123	17568275	-	asmbl_42038,asmbl_42040	none	STRG.5346.1,STRG.5346.2	2	blat.proc3829889.chain_1334	1
scaffold_17	alt_donor	1294595	1294596	-	asmbl_18733	none	STRG.19949.2	1	STRG.19949.1,blat.proc3829897.chain_824	2
scaffold_2	retained_exon	14193683	14193693	-	asmbl_23582,asmbl_23583,asmbl_23584,asmbl_23585	none	blat.proc3829887.chain_2207,blat.proc3829887.chain_2208,blat.proc3829887.chain_2209,blat.proc3829887.chain_2210	4	STRG.2417.2	1
scaffold_6	retained_exon	15362406	15362461	+	asmbl_47599	none	blat.proc3829875.chain_686	1	STRG.8276.1,blat.proc3829875.chain_685	2
scaffold_13	spliced_intron	8357971	8358153	+	asmbl_11116	none	STRG.16112.2	1	STRG.16112.1,STRG.16112.3,STRG.16112.4,STRG.16112.5,Trinity_GG_8876_c0_g1_i5,Trinity_GG_8876_c2_g1_i1,blat.proc3829879.chain_889,blat.proc3829879.chain_891,blat.proc3829879.chain_892,blat.proc3829879.chain_893,blat.proc3829879.chain_895	11
scaffold_6	alternate_exon	5429074	5429195	+	asmbl_46887	none	STRG.7507.1,blat.proc3829873.chain_3622	2	STRG.7507.2,blat.proc3829873.chain_3620	2
scaffold_16	alternate_exon	7531944	7532277	+	asmbl_17144	none	STRG.19399.1,blat.proc3829881.chain_274	2	STRG.19399.2	1
scaffold_20	spliced_intron	10787209	10787345	+	asmbl_26149	none	blat.proc3829883.chain_742	1	STRG.23592.1,STRG.23592.2,Trinity_GG_13065_c0_g1_i2,blat.proc3829883.chain_740,blat.proc3829883.chain_743	5
scaffold_18	retained_intron	9787942	9788236	-	asmbl_20116	none	Trinity_GG_29074_c0_g1_i2,blat.proc3829897.chain_2420	2	STRG.21574.1,blat.proc3829897.chain_2421	2
scaffold_8	spliced_intron	18163021	18163268	-	asmbl_53521,asmbl_53522,asmbl_53523,asmbl_53524	none	STRG.10720.1,Trinity_GG_22981_c0_g1_i1,Trinity_GG_22981_c0_g1_i2,Trinity_GG_22981_c0_g1_i6,Trinity_GG_22981_c0_g1_i9,blat.proc3829891.chain_2907,blat.proc3829891.chain_2908,blat.proc3829891.chain_2909,blat.proc3829891.chain_2911	9	blat.proc3829891.chain_2912	1
scaffold_14	skipped_exon	2247236	2247917	-	asmbl_12904,asmbl_12906	none	STRG.16817.2,Trinity_GG_26430_c0_g1_i3,blat.proc3829895.chain_1512	3	STRG.16817.1,Trinity_GG_26430_c0_g1_i1,Trinity_GG_26430_c0_g1_i2,blat.proc3829895.chain_1513,blat.proc3829895.chain_1514	5
scaffold_16	retained_intron	2386305	2386382	-	asmbl_16135	none	STRG.19122.1,blat.proc3829897.chain_139	2	STRG.19122.2	1
scaffold_7	alternate_exon	11231755	11231779	+	asmbl_51042	none	STRG.9258.1	1	STRG.9258.2,blat.proc3829875.chain_1696	2
scaffold_28	alternate_exon	2164996	2165021	+	asmbl_38035	none	STRG.29364.2	1	STRG.29364.1,blat.proc3829885.chain_2461	2
scaffold_10	spliced_intron	3928652	3928827	-	asmbl_3154,asmbl_3160	none	STRG.12230.3,STRG.12230.5,blat.proc3829893.chain_691	3	STRG.12230.2	1
scaffold_8	starts_in_intron	2690388	2690388	+	asmbl_51726	none	blat.proc3829875.chain_2211	1	STRG.9799.1,STRG.9799.2	2
scaffold_5	starts_in_intron	15624350	15624350	-	asmbl_46090	none	Trinity_GG_20809_c0_g1_i9	1	STRG.6749.1,STRG.6749.2,blat.proc3829889.chain_2825,blat.proc3829889.chain_2827	4
scaffold_14	alternate_exon	13599832	13599975	+	asmbl_12473	none	blat.proc3829879.chain_2306	1	STRG.17629.2,blat.proc3829879.chain_2307	2
scaffold_10	starts_in_intron	4128505	4128505	-	asmbl_3177	none	Trinity_GG_23810_c0_g1_i1,blat.proc3829893.chain_639	2	STRG.12241.1,STRG.12241.2,blat.proc3829893.chain_640,blat.proc3829893.chain_642	4
scaffold_15	alt_donor	5457803	5457804	-	asmbl_15222,asmbl_15223,asmbl_15225	none	STRG.18219.1,blat.proc3829895.chain_2953,blat.proc3829895.chain_2955,blat.proc3829895.chain_2956	4	STRG.18219.2,Trinity_GG_27252_c0_g1_i10,blat.proc3829895.chain_2954	3
scaffold_9	ends_in_intron	4957201	4957201	-	asmbl_54944	none	Trinity_GG_23124_c3_g1_i1,blat.proc3829891.chain_3173	2	STRG.11059.1,blat.proc3829891.chain_3170	2
scaffold_28	alternate_exon	5232583	5232614	-	asmbl_37587	none	Trinity_GG_33579_c0_g1_i3,blat.proc3829901.chain_2686	2	STRG.29652.1,STRG.29652.2,Trinity_GG_33579_c0_g1_i11,blat.proc3829901.chain_2678,blat.proc3829901.chain_2680,blat.proc3829901.chain_2681,blat.proc3829901.chain_2685,blat.proc3829901.chain_2687	8
scaffold_18	skipped_exon	1893284	1894703	-	asmbl_19699,asmbl_19701,asmbl_19702	none	STRG.21072.2,STRG.21072.4,STRG.21072.6	3	blat.proc3829897.chain_1890,blat.proc3829897.chain_1891,blat.proc3829897.chain_1893,blat.proc3829897.chain_1895,blat.proc3829897.chain_1897,blat.proc3829897.chain_1898,blat.proc3829897.chain_1899,blat.proc3829897.chain_1901,blat.proc3829897.chain_1902	9
scaffold_21	retained_intron	1053818	1053982	-	asmbl_27401,asmbl_27404,asmbl_27407,asmbl_27408	none	STRG.23776.3,STRG.23776.4,Trinity_GG_30261_c0_g1_i7,Trinity_GG_30261_c0_g1_i9,blat.proc3829899.chain_851,blat.proc3829899.chain_854	6	STRG.23776.1,Trinity_GG_30261_c0_g1_i11,blat.proc3829899.chain_850	3
scaffold_20	alt_acceptor	11382669	11382670	+	asmbl_26190,asmbl_26193	none	STRG.23634.1,STRG.23634.5,Trinity_GG_13050_c0_g1_i4,blat.proc3829883.chain_707	4	STRG.23634.2,STRG.23634.3,STRG.23634.4,Trinity_GG_13050_c0_g1_i1,Trinity_GG_13050_c0_g1_i2,blat.proc3829883.chain_704,blat.proc3829883.chain_705	7
scaffold_4	starts_in_intron	8245276	8245276	-	asmbl_41505	none	blat.proc3829889.chain_766	1	blat.proc3829889.chain_764	1
scaffold_5	alternate_exon	13115770	13115864	-	asmbl_45896	none	STRG.6540.1,blat.proc3829889.chain_2582	2	STRG.6540.2,blat.proc3829889.chain_2581	2
scaffold_23	alt_acceptor	2151781	2151782	-	asmbl_31413,asmbl_31414	none	STRG.25664.2,blat.proc3829899.chain_2766,blat.proc3829899.chain_2767	3	STRG.25664.1	1
scaffold_19	alternate_exon	11719499	11722836	-	asmbl_21644	none	STRG.22489.2,blat.proc3829897.chain_3177	2	blat.proc3829897.chain_3176	1
scaffold_3	retained_intron	4257051	4257133	+	asmbl_39944	none	STRG.3116.1,Trinity_GG_1763_c0_g1_i1	2	STRG.3116.2	1
scaffold_14	retained_exon	9272349	9273610	-	asmbl_13343,asmbl_13345,asmbl_13348	none	STRG.17323.1,blat.proc3829895.chain_1995,blat.proc3829895.chain_1996,blat.proc3829895.chain_1997,blat.proc3829895.chain_1999	5	STRG.17323.3	1
scaffold_8	alt_donor	17302622	17302623	-	asmbl_53455	none	STRG.10645.4	1	STRG.10645.3,blat.proc3829891.chain_2807	2
scaffold_5	retained_exon	15506385	15507043	-	asmbl_46062,asmbl_46065	none	STRG.6731.3,blat.proc3829889.chain_2802,blat.proc3829889.chain_2804	3	STRG.6731.1,STRG.6731.2,blat.proc3829889.chain_2803	3
scaffold_22	retained_exon	9719007	9719198	+	asmbl_29600	none	STRG.25292.3	1	STRG.25292.4	1
scaffold_21	spliced_intron	406429	406790	-	asmbl_27338,asmbl_27339,asmbl_27340,asmbl_27341,asmbl_27345	none	STRG.23722.1,STRG.23722.2,STRG.23722.4,STRG.23722.5,Trinity_GG_30229_c0_g1_i1,Trinity_GG_30229_c0_g1_i2,Trinity_GG_30229_c0_g1_i7,Trinity_GG_30229_c0_g1_i9,blat.proc3829899.chain_770,blat.proc3829899.chain_771,blat.proc3829899.chain_772,blat.proc3829899.chain_773	12	STRG.23722.3,blat.proc3829899.chain_768,blat.proc3829899.chain_769,blat.proc3829899.chain_774	4
scaffold_1	retained_intron	8651374	8651512	-	asmbl_473,asmbl_475	none	STRG.572.2,STRG.572.4,Trinity_GG_17313_c0_g1_i2,blat.proc3829887.chain_452	4	STRG.572.5	1
scaffold_23	alternate_exon	7406584	7410445	+	asmbl_30990	none	STRG.26040.1,Trinity_GG_14367_c0_g1_i1	2	STRG.26040.2	1
scaffold_18	spliced_intron	835426	835527	-	asmbl_19632,asmbl_19636,asmbl_19637	none	STRG.20998.3,blat.proc3829897.chain_1925,blat.proc3829897.chain_1926	3	blat.proc3829897.chain_1924	1
scaffold_16	alternate_exon	7027760	7027799	+	asmbl_17112	none	STRG.19361.2	1	STRG.19361.1	1
scaffold_50	alt_acceptor	26716	26717	-	asmbl_46438	none	STRG.30036.2,blat.proc3829901.chain_3140	2	STRG.30036.3	1
scaffold_1	skipped_exon	7374398	7376636	-	asmbl_443	none	STRG.517.3	1	STRG.517.2,blat.proc3829887.chain_405	2
scaffold_4	alt_donor	1333960	1333961	-	asmbl_41108,asmbl_41111,asmbl_41113	none	STRG.4173.2,STRG.4173.5,blat.proc3829889.chain_300,blat.proc3829889.chain_301	4	STRG.4173.3,STRG.4173.4,blat.proc3829889.chain_299,blat.proc3829889.chain_302	4
scaffold_7	ends_in_intron	4392380	4392380	+	asmbl_50609	none	blat.proc3829875.chain_1133	1	Trinity_GG_4787_c0_g1_i1,Trinity_GG_4787_c0_g1_i2,blat.proc3829875.chain_1130,blat.proc3829875.chain_1131	4
scaffold_26	spliced_intron	5486047	5486534	+	asmbl_35526	none	STRG.28241.4,Trinity_GG_15567_c0_g1_i6,blat.proc3829885.chain_1184	3	Trinity_GG_15567_c0_g1_i4,blat.proc3829885.chain_1189	2
scaffold_5	alt_acceptor	10850129	10850130	+	asmbl_44371	none	STRG.6350.3	1	STRG.6350.1,blat.proc3829873.chain_2512,blat.proc3829873.chain_2513,blat.proc3829873.chain_2514,blat.proc3829873.chain_2516	5
scaffold_27	alt_donor	5015701	5015702	+	asmbl_36293,asmbl_36295	none	STRG.28909.2,STRG.28909.3,Trinity_GG_16013_c0_g1_i3,blat.proc3829885.chain_2040,blat.proc3829885.chain_2041	5	STRG.28909.1,blat.proc3829885.chain_2042	2
scaffold_15	ends_in_intron	6961388	6961388	+	asmbl_14210	none	blat.proc3829879.chain_2929	1	STRG.18295.2	1
scaffold_11	alternate_exon	7675052	7677799	-	asmbl_6771	none	STRG.13764.1,blat.proc3829893.chain_2245	2	STRG.13764.2,STRG.13764.3	2
scaffold_1	retained_intron	5962878	5963181	-	asmbl_309	none	Trinity_GG_17226_c0_g2_i1,blat.proc3829887.chain_274	2	STRG.395.1,blat.proc3829887.chain_270,blat.proc3829887.chain_271,blat.proc3829887.chain_272,blat.proc3829887.chain_273	5
scaffold_22	alternate_exon	685499	685673	+	asmbl_29172	none	STRG.24704.2,Trinity_GG_13656_c0_g1_i2,blat.proc3829883.chain_1755	3	Trinity_GG_13656_c0_g1_i1,blat.proc3829883.chain_1754	2
scaffold_5	ends_in_intron	10973724	10973724	+	asmbl_44388	none	blat.proc3829873.chain_2458	1	STRG.6369.1,blat.proc3829873.chain_2459	2
scaffold_21	skipped_exon	6391077	6393407	+	asmbl_28651	none	STRG.24152.1,blat.proc3829883.chain_1199	2	blat.proc3829883.chain_1200,blat.proc3829883.chain_1201	2
scaffold_2	spliced_intron	3631902	3632007	+	asmbl_24311,asmbl_24312,asmbl_24314,asmbl_24315	none	STRG.1787.1,STRG.1787.2,Trinity_GG_982_c0_g1_i6,blat.proc3829871.chain_1793	4	STRG.1787.3	1
scaffold_2	retained_intron	14193694	14193809	-	asmbl_23580,asmbl_23586	none	STRG.2417.1,blat.proc3829887.chain_2212	2	blat.proc3829887.chain_2207,blat.proc3829887.chain_2208,blat.proc3829887.chain_2209,blat.proc3829887.chain_2210	4
scaffold_9	spliced_intron	16575103	16575191	+	asmbl_54582	none	STRG.11786.2,blat.proc3829877.chain_536	2	STRG.11786.1,blat.proc3829877.chain_534	2
scaffold_2	alt_donor	14369226	14369227	+	asmbl_24954	none	STRG.2434.2,blat.proc3829871.chain_2609	2	STRG.2434.1,blat.proc3829871.chain_2608	2
scaffold_5	retained_intron	13316127	13316220	-	asmbl_45916,asmbl_45917	none	blat.proc3829889.chain_2544,blat.proc3829889.chain_2545	2	STRG.6578.1,STRG.6578.2,blat.proc3829889.chain_2546,blat.proc3829889.chain_2547	4
scaffold_14	retained_intron	7444437	7444909	-	asmbl_13186	none	STRG.17168.2,Trinity_GG_26575_c0_g1_i2,blat.proc3829895.chain_1747	3	STRG.17168.1,Trinity_GG_26575_c0_g1_i1,blat.proc3829895.chain_1748	3
scaffold_23	alt_acceptor	10938115	10938116	-	asmbl_31889,asmbl_31891,asmbl_31892	none	STRG.26279.1,STRG.26279.2,STRG.26279.3	3	blat.proc3829899.chain_3332,blat.proc3829899.chain_3333	2
scaffold_10	retained_intron	3129058	3129956	-	asmbl_3080	none	STRG.12130.2,Trinity_GG_23778_c0_g1_i1,Trinity_GG_23778_c0_g1_i4,blat.proc3829893.chain_592,blat.proc3829893.chain_593	5	STRG.12130.1,Trinity_GG_23778_c0_g1_i3,blat.proc3829893.chain_594	3
scaffold_8	retained_intron	14134155	14134355	-	asmbl_53301	none	blat.proc3829891.chain_2654	1	STRG.10512.1,STRG.10512.2	2
scaffold_26	alt_donor	968977	968978	-	asmbl_34672	none	STRG.27878.1,blat.proc3829901.chain_1136	2	STRG.27878.2	1
scaffold_21	alt_donor	5776475	5776476	-	asmbl_27718,asmbl_27720,asmbl_27721,asmbl_27723	none	STRG.24099.1,STRG.24099.3,blat.proc3829899.chain_1196,blat.proc3829899.chain_1198,blat.proc3829899.chain_1200	5	STRG.24099.2,blat.proc3829899.chain_1199	2
scaffold_8	spliced_intron	6028315	6028414	+	asmbl_51909,asmbl_51911,asmbl_51912,asmbl_51914	none	Trinity_GG_5590_c1_g1_i6,blat.proc3829875.chain_2552,blat.proc3829875.chain_2553,blat.proc3829875.chain_2554,blat.proc3829875.chain_2555	5	blat.proc3829875.chain_2551	1
scaffold_3	retained_intron	18345996	18346126	-	asmbl_39561	none	blat.proc3829873.chain_417	1	STRG.4038.1,blat.proc3829889.chain_77	2
scaffold_4	alt_acceptor	18558566	18558567	-	asmbl_42132	none	blat.proc3829889.chain_1543	1	STRG.5457.1,STRG.5457.2,blat.proc3829889.chain_1544,blat.proc3829889.chain_1545	4
scaffold_7	starts_in_intron	4393107	4393107	+	asmbl_50610	none	Trinity_GG_4787_c0_g2_i1,blat.proc3829875.chain_1132	2	Trinity_GG_4787_c0_g1_i1,Trinity_GG_4787_c0_g1_i2,blat.proc3829875.chain_1130,blat.proc3829875.chain_1131	4
scaffold_1	retained_intron	20742516	20742758	-	asmbl_1200	none	blat.proc3829887.chain_1305	1	blat.proc3829887.chain_1304	1
scaffold_3	spliced_intron	3263784	3264657	+	asmbl_39899	none	STRG.3087.1	1	STRG.3087.6,Trinity_GG_1771_c0_g1_i19,blat.proc3829871.chain_3296,blat.proc3829871.chain_3301	4
scaffold_28	starts_in_intron	3848680	3848680	-	asmbl_37501	none	blat.proc3829901.chain_2565	1	STRG.29564.1	1
scaffold_4	alt_donor	14590933	14590934	-	asmbl_41798,asmbl_41799	none	STRG.5078.1,STRG.5078.2,blat.proc3829889.chain_1111,blat.proc3829889.chain_1112	4	STRG.5078.3	1
scaffold_6	starts_in_intron	9140192	9140192	+	asmbl_47147	none	Trinity_GG_4291_c0_g1_i12,blat.proc3829875.chain_199	2	STRG.7784.4,blat.proc3829875.chain_195,blat.proc3829875.chain_197,blat.proc3829875.chain_198,blat.proc3829875.chain_201,blat.proc3829875.chain_202,blat.proc3829875.chain_203,blat.proc3829875.chain_204	8
scaffold_4	spliced_intron	15678206	15678313	-	asmbl_41860,asmbl_41861,asmbl_41862	none	STRG.5156.1,STRG.5156.2,blat.proc3829889.chain_1189,blat.proc3829889.chain_1190,blat.proc3829889.chain_1191,blat.proc3829889.chain_1193	6	blat.proc3829889.chain_1192	1
scaffold_4	alt_donor	15116163	15116164	+	asmbl_43263,asmbl_43264	none	STRG.5116.1,blat.proc3829873.chain_1405	2	STRG.5116.2	1
scaffold_19	retained_intron	11458491	11458642	-	asmbl_21594	none	Trinity_GG_29491_c0_g1_i7,blat.proc3829897.chain_3114	2	STRG.22464.1,blat.proc3829897.chain_3111,blat.proc3829897.chain_3112,blat.proc3829897.chain_3115,blat.proc3829897.chain_3116	5
scaffold_18	alternate_exon	2050823	2050890	-	asmbl_19730,asmbl_19731	none	STRG.21084.2,STRG.21084.3	2	STRG.21084.1,Trinity_GG_28833_c0_g1_i1,blat.proc3829897.chain_1993	3
scaffold_6	spliced_intron	12653940	12654092	+	asmbl_47367	none	blat.proc3829875.chain_365	1	Trinity_GG_4365_c0_g1_i3,blat.proc3829875.chain_368	2
scaffold_19	alt_acceptor	1111294	1111295	-	asmbl_21229	none	STRG.21887.1	1	STRG.21887.4	1
scaffold_6	alt_donor	13919127	13919128	-	asmbl_48894	none	STRG.8132.2,blat.proc3829891.chain_438	2	STRG.8132.3	1
scaffold_14	spliced_intron	6645463	6645615	-	asmbl_13125,asmbl_13126	none	STRG.17095.1,STRG.17095.3	2	STRG.17095.2	1
scaffold_2	starts_in_intron	4036408	4036408	+	asmbl_24354	none	Trinity_GG_1037_c0_g1_i1,blat.proc3829871.chain_1899	2	STRG.1846.1,Trinity_GG_1037_c0_g1_i2,blat.proc3829871.chain_1900	3
scaffold_2	spliced_intron	276356	276443	-	asmbl_22822	none	STRG.1516.1	1	Trinity_GG_17848_c0_g1_i1,blat.proc3829887.chain_1392	2
scaffold_3	alt_donor	11307715	11307716	-	asmbl_39097	none	STRG.3555.1,blat.proc3829887.chain_3324	2	blat.proc3829887.chain_3325	1
scaffold_21	spliced_intron	5598203	5598331	-	asmbl_27708,asmbl_27709	none	STRG.24081.1,STRG.24081.2,Trinity_GG_30401_c0_g1_i2,Trinity_GG_30401_c0_g1_i3,blat.proc3829899.chain_1083,blat.proc3829899.chain_1084	6	Trinity_GG_30401_c0_g1_i1,blat.proc3829899.chain_1082	2
scaffold_1	alt_acceptor	1555624	1555625	+	asmbl_1486	none	STRG.92.1	1	STRG.92.2	1
scaffold_4	alternate_exon	7247177	7247537	+	asmbl_42810	none	STRG.4556.2,Trinity_GG_2528_c1_g1_i1,blat.proc3829873.chain_930	3	STRG.4556.1,Trinity_GG_2528_c0_g1_i1	2
scaffold_10	retained_intron	8546671	8546911	-	asmbl_3509,asmbl_3511	none	STRG.12603.1,blat.proc3829893.chain_1116,blat.proc3829893.chain_1117	3	blat.proc3829893.chain_1115	1
scaffold_19	starts_in_intron	7740171	7740171	-	asmbl_21470	none	blat.proc3829897.chain_2982	1	STRG.22242.1,blat.proc3829897.chain_2983	2
scaffold_8	starts_in_intron	11567128	11567128	+	asmbl_52222	none	STRG.10345.2,Trinity_GG_5709_c0_g1_i2,blat.proc3829875.chain_2776	3	STRG.10345.1	1
scaffold_27	alt_acceptor	638419	638420	-	asmbl_36662,asmbl_36664	none	STRG.28565.1,Trinity_GG_32989_c1_g1_i6,blat.proc3829901.chain_1761	3	Trinity_GG_32989_c1_g1_i5,blat.proc3829901.chain_1762	2
scaffold_12	starts_in_intron	14294375	14294375	-	asmbl_8139	none	STRG.15253.1,Trinity_GG_25524_c0_g1_i1,Trinity_GG_25524_c0_g1_i3,blat.proc3829893.chain_3633,blat.proc3829893.chain_3635	5	Trinity_GG_25524_c0_g1_i2,blat.proc3829893.chain_3634	2
scaffold_21	alt_acceptor	6921891	6921892	-	asmbl_27778	none	STRG.24206.2	1	STRG.24206.1,Trinity_GG_30490_c0_g1_i2,blat.proc3829899.chain_1247,blat.proc3829899.chain_1248	4
scaffold_8	alternate_exon	8172234	8172683	+	asmbl_51989	none	STRG.10093.2,blat.proc3829875.chain_2576	2	STRG.10093.3	1
scaffold_1	starts_in_intron	4226050	4226050	+	asmbl_1639	none	Trinity_GG_179_c0_g1_i2,blat.proc3829871.chain_305	2	STRG.249.2,blat.proc3829871.chain_308	2
scaffold_2	retained_intron	14021578	14021829	+	asmbl_24903	none	blat.proc3829871.chain_2491	1	STRG.2396.2,STRG.2396.3	2
scaffold_14	spliced_intron	1715347	1715448	-	asmbl_12890	none	STRG.16794.1,Trinity_GG_26421_c0_g1_i3,blat.proc3829895.chain_1503	3	Trinity_GG_26421_c0_g1_i1,blat.proc3829895.chain_1502	2
scaffold_13	starts_in_intron	3562770	3562770	+	asmbl_10691	none	blat.proc3829879.chain_328	1	STRG.15657.1,blat.proc3829879.chain_327	2
scaffold_14	starts_in_intron	15831399	15831399	-	asmbl_13736	none	blat.proc3829895.chain_2466	1	STRG.17811.1	1
scaffold_19	spliced_intron	11458491	11458642	-	asmbl_21595,asmbl_21596,asmbl_21597,asmbl_21598	none	STRG.22464.1,blat.proc3829897.chain_3111,blat.proc3829897.chain_3112,blat.proc3829897.chain_3115,blat.proc3829897.chain_3116	5	Trinity_GG_29491_c0_g1_i7,blat.proc3829897.chain_3114	2
scaffold_5	alt_donor	911763	911764	-	asmbl_45182	none	blat.proc3829889.chain_1719	1	STRG.5629.1	1
scaffold_23	spliced_intron	7938919	7939182	-	asmbl_31781	none	STRG.26079.3,blat.proc3829899.chain_3196	2	STRG.26079.1,Trinity_GG_31604_c0_g2_i1,blat.proc3829899.chain_3195	3
scaffold_1	alt_acceptor	12864081	12864082	+	asmbl_2247	none	STRG.911.1,blat.proc3829871.chain_960	2	STRG.911.2	1
scaffold_8	starts_in_intron	3328665	3328665	+	asmbl_51746	none	Trinity_GG_5458_c0_g2_i2,blat.proc3829875.chain_2300	2	STRG.9826.1,blat.proc3829875.chain_2299	2
scaffold_2	spliced_intron	16085317	16085688	-	asmbl_23682	none	STRG.2559.1,blat.proc3829887.chain_2401	2	blat.proc3829887.chain_2398,blat.proc3829887.chain_2399	2
scaffold_6	alternate_exon	8938211	8938341	+	asmbl_47116	none	STRG.7765.4,Trinity_GG_4211_c2_g1_i1,blat.proc3829875.chain_44	3	STRG.7765.3	1
scaffold_26	spliced_intron	5874040	5874142	-	asmbl_34908	none	STRG.28273.2,Trinity_GG_32822_c0_g1_i1,blat.proc3829901.chain_1451	3	STRG.28273.1	1
scaffold_13	spliced_intron	2653329	2653423	-	asmbl_9429	none	STRG.15566.2	1	blat.proc3829895.chain_304	1
scaffold_15	alt_donor	12000365	12000366	-	asmbl_15565	none	STRG.18630.2,Trinity_GG_27487_c0_g1_i7,blat.proc3829895.chain_3420	3	STRG.18630.1,STRG.18630.3,Trinity_GG_27487_c0_g1_i1,Trinity_GG_27487_c0_g1_i3,blat.proc3829895.chain_3415,blat.proc3829895.chain_3418	6
scaffold_18	alternate_exon	12403764	12403796	-	asmbl_20174	none	blat.proc3829897.chain_2489	1	STRG.21698.2,blat.proc3829897.chain_2491	2
scaffold_24	starts_in_intron	8957972	8957972	+	asmbl_32470	none	Trinity_GG_14870_c0_g1_i1,blat.proc3829885.chain_34	2	STRG.26898.1,STRG.26898.2,Trinity_GG_14870_c0_g1_i2,blat.proc3829885.chain_35	4
scaffold_20	alt_donor	6308029	6308030	-	asmbl_26755	none	STRG.23214.2	1	STRG.23214.1,blat.proc3829899.chain_255	2
scaffold_12	alternate_exon	13403504	13404378	-	asmbl_8074	none	STRG.15208.3	1	STRG.15208.2,blat.proc3829893.chain_3625	2
scaffold_4	skipped_exon	6280167	6283128	-	asmbl_41410	none	Trinity_GG_19560_c0_g1_i3,blat.proc3829889.chain_664	2	STRG.4498.1,STRG.4498.2,Trinity_GG_19560_c0_g1_i1,Trinity_GG_19560_c0_g1_i6,Trinity_GG_19560_c0_g1_i9,blat.proc3829889.chain_662,blat.proc3829889.chain_663,blat.proc3829889.chain_666,blat.proc3829889.chain_668	9
scaffold_9	alt_acceptor	12113295	12113296	+	asmbl_54392	none	STRG.11529.1,blat.proc3829877.chain_304	2	STRG.11529.2	1
scaffold_11	spliced_intron	4759244	4759351	-	asmbl_6605,asmbl_6606,asmbl_6607	none	STRG.13565.1,blat.proc3829893.chain_2020,blat.proc3829893.chain_2021,blat.proc3829893.chain_2022	4	blat.proc3829893.chain_2023	1
scaffold_1	alternate_exon	6831193	6831526	-	asmbl_397	none	blat.proc3829887.chain_366	1	STRG.478.2,STRG.478.3,blat.proc3829887.chain_369	3
scaffold_2	retained_intron	14132199	14132279	-	asmbl_23575	none	blat.proc3829887.chain_2198	1	STRG.2406.1,blat.proc3829887.chain_2196,blat.proc3829887.chain_2197	3
scaffold_8	retained_exon	11853029	11853069	+	asmbl_52269,asmbl_52270,asmbl_52276	none	STRG.10382.3,blat.proc3829875.chain_2968,blat.proc3829875.chain_2975,blat.proc3829875.chain_2979	4	blat.proc3829875.chain_2980	1
scaffold_27	spliced_intron	2436344	2436368	+	asmbl_36045	none	STRG.28696.1	1	blat.proc3829885.chain_1760	1
scaffold_14	alt_acceptor	13897828	13897829	+	asmbl_12498,asmbl_12500	none	STRG.17653.3,STRG.17653.5	2	STRG.17653.1,STRG.17653.2,STRG.17653.4,blat.proc3829879.chain_2349	4
scaffold_6	retained_intron	4832299	4832373	-	asmbl_48305	none	blat.proc3829889.chain_3519	1	STRG.7455.1,blat.proc3829889.chain_3518	2
scaffold_12	ends_in_intron	5144179	5144179	-	asmbl_7619	none	Trinity_GG_25205_c0_g1_i3	1	STRG.14677.1,blat.proc3829893.chain_3084,blat.proc3829893.chain_3085	3
scaffold_2	skipped_exon	888658	889898	+	asmbl_24154	none	blat.proc3829871.chain_1547	1	blat.proc3829871.chain_1550	1
scaffold_2	alternate_exon	6517217	6517310	+	asmbl_24498,asmbl_24503	none	STRG.2022.1,STRG.2022.2,Trinity_GG_1139_c0_g1_i2	3	STRG.2022.5,blat.proc3829871.chain_2079	2
scaffold_24	retained_intron	9121547	9121613	+	asmbl_32518	none	blat.proc3829885.chain_21,blat.proc3829885.chain_23	2	STRG.26917.2	1
scaffold_10	alt_acceptor	9397813	9397814	+	asmbl_4654	none	blat.proc3829877.chain_1235	1	STRG.12671.1	1
scaffold_15	retained_intron	8039747	8040076	-	asmbl_15346	none	STRG.18369.2,Trinity_GG_27305_c0_g1_i5,Trinity_GG_27305_c0_g1_i6,blat.proc3829895.chain_3068,blat.proc3829895.chain_3071	5	STRG.18369.4	1
scaffold_22	spliced_intron	214832	216306	+	asmbl_29113	none	STRG.24661.6	1	STRG.24661.1,Trinity_GG_13639_c0_g1_i4,blat.proc3829883.chain_1718	3
scaffold_27	alternate_exon	4243441	4243485	+	asmbl_36227	none	STRG.28864.2,blat.proc3829885.chain_1934	2	STRG.28864.1,Trinity_GG_15969_c0_g1_i1,blat.proc3829885.chain_1933	3
scaffold_2	ends_in_intron	15700940	15700940	+	asmbl_25094	none	Trinity_GG_1414_c0_g1_i4,blat.proc3829871.chain_2675	2	STRG.2526.1,STRG.2526.2,blat.proc3829871.chain_2673,blat.proc3829871.chain_2676	4
scaffold_10	alt_acceptor	5006973	5006974	-	asmbl_3248	none	STRG.12316.1,blat.proc3829893.chain_756	2	STRG.12316.2,Trinity_GG_23874_c0_g1_i4,blat.proc3829893.chain_754	3
scaffold_2	retained_intron	949181	949507	+	asmbl_24190	none	blat.proc3829871.chain_1651	1	STRG.1574.1,STRG.1574.2,STRG.1574.3,blat.proc3829871.chain_1645,blat.proc3829871.chain_1649	5
scaffold_27	spliced_intron	2903073	2903179	-	asmbl_36821	none	STRG.28755.1,Trinity_GG_33104_c0_g1_i2,blat.proc3829901.chain_1932	3	STRG.28755.3,blat.proc3829901.chain_1933	2
scaffold_9	alt_acceptor	11876875	11876876	+	asmbl_54372	none	Trinity_GG_6418_c0_g1_i2,blat.proc3829877.chain_280	2	STRG.11498.1	1
scaffold_13	alt_acceptor	2354605	2354606	+	asmbl_10575,asmbl_10576,asmbl_10579,asmbl_10580,asmbl_10581,asmbl_10582,asmbl_10583,asmbl_10584,asmbl_10585,asmbl_10591	none	STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161,blat.proc3829879.chain_162	10	STRG.15543.3,STRG.15543.6	2
scaffold_27	ends_in_intron	2842836	2842836	+	asmbl_36091	none	Trinity_GG_15909_c0_g1_i5,blat.proc3829885.chain_1807	2	STRG.28746.1,blat.proc3829885.chain_1805	2
scaffold_10	ends_in_intron	10277977	10277977	-	asmbl_3620	none	Trinity_GG_24134_c1_g1_i8	1	STRG.12709.2,STRG.12709.3,blat.proc3829893.chain_1234,blat.proc3829893.chain_1236	4
scaffold_17	starts_in_intron	11258292	11258292	+	asmbl_18332	none	STRG.20673.2	1	STRG.20673.1	1
scaffold_2	alt_acceptor	18614288	18614289	-	asmbl_23822	none	blat.proc3829887.chain_2516	1	STRG.2737.1,blat.proc3829887.chain_2515	2
scaffold_7	starts_in_intron	1333088	1333088	-	asmbl_49528	none	STRG.8625.2,blat.proc3829891.chain_919	2	blat.proc3829891.chain_917,blat.proc3829891.chain_918	2
scaffold_24	retained_intron	1078656	1078823	+	asmbl_32075	none	STRG.26363.2,blat.proc3829883.chain_3302	2	STRG.26363.1,blat.proc3829883.chain_3300	2
scaffold_20	starts_in_intron	5950185	5950185	-	asmbl_26726	none	blat.proc3829899.chain_163	1	STRG.23191.1,blat.proc3829899.chain_160,blat.proc3829899.chain_161	3
scaffold_12	spliced_intron	12348871	12349011	+	asmbl_8959	none	STRG.15126.1,Trinity_GG_8344_c0_g1_i1,blat.proc3829877.chain_3601	3	blat.proc3829877.chain_3600	1
scaffold_27	alternate_exon	5783649	5783781	-	asmbl_36975	none	STRG.28957.2	1	STRG.28957.1	1
scaffold_6	retained_intron	16876680	16876794	-	asmbl_49106	none	STRG.8397.1,blat.proc3829891.chain_721	2	STRG.8397.2,blat.proc3829891.chain_722	2
scaffold_13	starts_in_intron	6806646	6806646	+	asmbl_10963	none	Trinity_GG_8771_c0_g1_i4,blat.proc3829879.chain_661	2	STRG.15957.1,STRG.15957.2,blat.proc3829879.chain_658,blat.proc3829879.chain_659,blat.proc3829879.chain_660	5
scaffold_9	retained_intron	9405231	9405353	-	asmbl_55129	none	Trinity_GG_23264_c0_g1_i2,Trinity_GG_23264_c0_g1_i3,blat.proc3829891.chain_3430,blat.proc3829891.chain_3431	4	STRG.11286.1,blat.proc3829891.chain_3432	2
scaffold_14	alt_acceptor	1070397	1070398	+	asmbl_11764	none	STRG.16754.4	1	STRG.16754.1,STRG.16754.2,STRG.16754.5,Trinity_GG_9205_c0_g1_i2,blat.proc3829879.chain_1436,blat.proc3829879.chain_1438,blat.proc3829879.chain_1441	7
scaffold_6	spliced_intron	12990908	12991437	-	asmbl_48794,asmbl_48796,asmbl_48797	none	STRG.8061.1,STRG.8061.4,blat.proc3829891.chain_260,blat.proc3829891.chain_272	4	STRG.8061.2,STRG.8061.3,blat.proc3829891.chain_262,blat.proc3829891.chain_263,blat.proc3829891.chain_264,blat.proc3829891.chain_271,blat.proc3829891.chain_275	7
scaffold_14	spliced_intron	7215130	7215744	+	asmbl_12112	none	STRG.17138.1,Trinity_GG_9432_c0_g1_i1,blat.proc3829879.chain_1872	3	Trinity_GG_9432_c0_g1_i2,blat.proc3829879.chain_1870,blat.proc3829879.chain_1871	3
scaffold_24	alt_acceptor	10605500	10605501	+	asmbl_32581,asmbl_32582,asmbl_32584	none	STRG.27008.1,STRG.27008.2,blat.proc3829885.chain_139,blat.proc3829885.chain_140,blat.proc3829885.chain_142	5	blat.proc3829885.chain_141	1
scaffold_3	alternate_exon	3249267	3250442	+	asmbl_39897	none	STRG.3087.6,Trinity_GG_1771_c2_g1_i1,blat.proc3829871.chain_3313	3	STRG.3087.1,STRG.3087.4,STRG.3087.5	3
scaffold_12	alternate_exon	6414511	6414581	+	asmbl_8640	none	blat.proc3829877.chain_3203,blat.proc3829877.chain_3205	2	STRG.14730.1,STRG.14730.2,blat.proc3829877.chain_3204	3
scaffold_4	starts_in_intron	12617145	12617145	-	asmbl_41680	none	blat.proc3829889.chain_960	1	STRG.4900.1,blat.proc3829889.chain_961	2
scaffold_12	ends_in_intron	4609993	4609993	-	asmbl_7552,asmbl_7553,asmbl_7554	none	STRG.14626.4,blat.proc3829893.chain_2996,blat.proc3829893.chain_2999	3	STRG.14626.1,STRG.14626.2,blat.proc3829893.chain_2998,blat.proc3829893.chain_3000,blat.proc3829893.chain_3001	5
scaffold_5	alt_acceptor	17992935	17992936	+	asmbl_44861	none	STRG.6936.2	1	STRG.6936.1,blat.proc3829873.chain_2991	2
scaffold_14	alternate_exon	15359136	15362239	-	asmbl_13700	none	STRG.17750.1,blat.proc3829895.chain_2456	2	STRG.17750.2,blat.proc3829895.chain_2455	2
scaffold_27	starts_in_intron	4526489	4526489	+	asmbl_36264	none	STRG.28885.2	1	STRG.28885.1	1
scaffold_7	starts_in_intron	13219763	13219763	+	asmbl_51212	none	STRG.9423.2	1	STRG.9423.1	1
scaffold_5	retained_intron	6933262	6933389	+	asmbl_44128	none	blat.proc3829873.chain_2154	1	blat.proc3829873.chain_2155	1
scaffold_6	retained_intron	10958023	10958151	-	asmbl_48662	none	blat.proc3829891.chain_72	1	STRG.7907.1,blat.proc3829891.chain_73	2
scaffold_1	retained_intron	5962385	5962489	-	asmbl_311,asmbl_312	none	blat.proc3829887.chain_272,blat.proc3829887.chain_273	2	STRG.395.1,blat.proc3829887.chain_270,blat.proc3829887.chain_271	3
scaffold_21	retained_intron	2441436	2441601	+	asmbl_28411	none	Trinity_GG_13215_c0_g1_i1,blat.proc3829883.chain_997	2	STRG.23854.1	1
scaffold_7	starts_in_intron	2488945	2488945	+	asmbl_50527	none	blat.proc3829875.chain_1065	1	STRG.8671.1,STRG.8671.2,blat.proc3829875.chain_1063	3
scaffold_24	alternate_exon	9084956	9084989	+	asmbl_32508	none	STRG.26930.3	1	STRG.26930.1,STRG.26930.2,blat.proc3829885.chain_81,blat.proc3829885.chain_84	4
scaffold_17	starts_in_intron	8219598	8219598	+	asmbl_18078,asmbl_18085,asmbl_18086,asmbl_18087	none	STRG.20435.1,blat.proc3829881.chain_1198,blat.proc3829881.chain_1199,blat.proc3829881.chain_1200,blat.proc3829881.chain_1203	5	blat.proc3829881.chain_1196	1
scaffold_7	starts_in_intron	4931375	4931375	+	asmbl_50653	none	STRG.8834.3,Trinity_GG_4880_c0_g2_i1,blat.proc3829875.chain_1284	3	STRG.8834.1,STRG.8834.2,blat.proc3829875.chain_1275,blat.proc3829875.chain_1276,blat.proc3829875.chain_1278,blat.proc3829875.chain_1279,blat.proc3829875.chain_1280,blat.proc3829875.chain_1281,blat.proc3829875.chain_1282,blat.proc3829875.chain_1283	10
scaffold_3	retained_intron	5159772	5159888	-	asmbl_38793	none	Trinity_GG_18766_c0_g2_i1,blat.proc3829887.chain_2969	2	STRG.3212.1	1
scaffold_2	spliced_intron	7469822	7470021	-	asmbl_23286,asmbl_23289	none	STRG.2075.4,blat.proc3829887.chain_1892	2	STRG.2075.2,blat.proc3829887.chain_1898	2
scaffold_13	alt_donor	9536191	9536192	-	asmbl_9994	none	STRG.16202.4	1	STRG.16202.3,STRG.16202.5,blat.proc3829895.chain_991	3
scaffold_13	retained_exon	11586717	11586913	+	asmbl_11277,asmbl_11278,asmbl_11280	none	STRG.16295.3,blat.proc3829879.chain_1019,blat.proc3829879.chain_1020	3	STRG.16295.1,blat.proc3829879.chain_1014,blat.proc3829879.chain_1023	3
scaffold_8	starts_in_intron	16386514	16386514	+	asmbl_52444	none	Trinity_GG_5913_c2_g1_i1,blat.proc3829875.chain_3147	2	STRG.10611.2,Trinity_GG_5913_c0_g1_i3,blat.proc3829875.chain_3144	3
scaffold_16	alt_acceptor	13214170	13214171	+	asmbl_17454,asmbl_17455	none	STRG.19770.1,STRG.19770.2,blat.proc3829881.chain_595,blat.proc3829881.chain_596,blat.proc3829881.chain_598	5	STRG.19770.3	1
scaffold_9	spliced_intron	3711582	3711674	-	asmbl_54896	none	STRG.10975.2,Trinity_GG_23095_c0_g1_i2,blat.proc3829891.chain_3132	3	STRG.10975.1,Trinity_GG_23095_c0_g1_i1,blat.proc3829891.chain_3133	3
scaffold_17	retained_exon	1665736	1665886	+	asmbl_17749,asmbl_17751	none	STRG.19985.1,blat.proc3829881.chain_825,blat.proc3829881.chain_826	3	STRG.19985.2,blat.proc3829881.chain_827	2
scaffold_10	retained_intron	5010843	5010929	-	asmbl_3249	none	STRG.12318.1,blat.proc3829893.chain_746	2	blat.proc3829893.chain_749	1
scaffold_10	retained_exon	9003657	9003692	+	asmbl_4628,asmbl_4629	none	STRG.12637.1,STRG.12637.2,blat.proc3829877.chain_1127,blat.proc3829877.chain_1128	4	STRG.12637.3,STRG.12637.4	2
scaffold_4	spliced_intron	13076300	13076428	+	asmbl_43108	none	STRG.4945.3,blat.proc3829873.chain_1238	2	blat.proc3829873.chain_1239	1
scaffold_9	starts_in_intron	5262862	5262862	+	asmbl_54004	none	blat.proc3829875.chain_3585	1	STRG.11095.1,STRG.11095.3,blat.proc3829875.chain_3586	3
scaffold_16	spliced_intron	6138194	6138347	-	asmbl_16317	none	STRG.19336.1,blat.proc3829897.chain_388	2	blat.proc3829897.chain_389	1
scaffold_25	alternate_exon	3688250	3690665	+	asmbl_33448	none	STRG.27297.1,blat.proc3829885.chain_328	2	STRG.27297.2	1
scaffold_7	retained_exon	15033538	15033597	-	asmbl_50173	none	STRG.9514.1	1	STRG.9514.2	1
scaffold_18	alternate_exon	12935865	12936137	+	asmbl_21002	none	STRG.21731.1	1	STRG.21731.2	1
scaffold_11	skipped_exon	3497053	3497672	+	asmbl_5401	none	STRG.13472.3	1	STRG.13472.2,STRG.13472.4,blat.proc3829877.chain_1902	3
scaffold_1	alt_donor	13639198	13639199	-	asmbl_842	none	STRG.979.1,blat.proc3829887.chain_881	2	STRG.979.2	1
scaffold_15	starts_in_intron	1689947	1689947	+	asmbl_13970	none	Trinity_GG_9893_c0_g1_i1,blat.proc3829879.chain_2662	2	STRG.17962.1,Trinity_GG_9893_c0_g1_i2,blat.proc3829879.chain_2663	3
scaffold_6	starts_in_intron	2908436	2908436	+	asmbl_46734	none	STRG.7289.2	1	blat.proc3829873.chain_3373	1
scaffold_23	ends_in_intron	9833741	9833741	-	asmbl_31827	none	Trinity_GG_31641_c0_g1_i3,blat.proc3829899.chain_3266	2	STRG.26161.1	1
scaffold_3	spliced_intron	5159772	5159888	-	asmbl_38792	none	STRG.3212.1	1	Trinity_GG_18766_c0_g2_i1,blat.proc3829887.chain_2969	2
scaffold_25	retained_intron	3725793	3725904	+	asmbl_33456	none	STRG.27303.3	1	STRG.27303.1,STRG.27303.2,blat.proc3829885.chain_329,blat.proc3829885.chain_330	4
scaffold_5	starts_in_intron	15799920	15799920	-	asmbl_46109	none	blat.proc3829889.chain_2782	1	STRG.6762.1,STRG.6762.2	2
scaffold_16	retained_exon	7235244	7235324	-	asmbl_16347,asmbl_16355	none	STRG.19382.1,STRG.19382.7	2	STRG.19382.3,STRG.19382.6,STRG.19382.8	3
scaffold_6	alt_acceptor	10170457	10170458	+	asmbl_47200	none	STRG.7841.1	1	STRG.7841.2	1
scaffold_6	ends_in_intron	10750475	10750475	+	asmbl_47231	none	blat.proc3829875.chain_280	1	blat.proc3829875.chain_279	1
scaffold_11	alt_acceptor	3137524	3137525	-	asmbl_6507,asmbl_6511	none	STRG.13434.1,STRG.13434.3,blat.proc3829893.chain_1872	3	blat.proc3829893.chain_1873	1
scaffold_17	retained_intron	9088832	9088926	-	asmbl_19196,asmbl_19199	none	STRG.20530.2,STRG.20530.3,blat.proc3829897.chain_1483	3	STRG.20530.1,blat.proc3829897.chain_1482	2
scaffold_8	skipped_exon	12027188	12027729	+	asmbl_52294	none	Trinity_GG_5804_c0_g1_i2,blat.proc3829875.chain_2932	2	STRG.10394.1,Trinity_GG_5804_c0_g1_i3,blat.proc3829875.chain_2930	3
scaffold_6	ends_in_intron	10376176	10376176	-	asmbl_48630	none	blat.proc3829891.chain_138	1	STRG.7867.1,Trinity_GG_21473_c0_g1_i3,blat.proc3829891.chain_139,blat.proc3829891.chain_140	4
scaffold_85	alt_acceptor	1302	1303	-	asmbl_53689,asmbl_53690	none	STRG.30107.1,STRG.30107.2,blat.proc3829901.chain_3204	3	blat.proc3829901.chain_3205	1
scaffold_27	alt_donor	2629499	2629500	-	asmbl_36786	none	STRG.28717.3,blat.proc3829901.chain_1908	2	STRG.28717.2,blat.proc3829901.chain_1909	2
scaffold_3	starts_in_intron	5154849	5154849	-	asmbl_38794	none	blat.proc3829887.chain_2968	1	STRG.3212.1	1
scaffold_17	retained_exon	12370509	12370560	-	asmbl_19375,asmbl_19376	none	STRG.20776.1,STRG.20776.3	2	STRG.20776.2,blat.proc3829897.chain_1640	2
scaffold_20	alternate_exon	8290168	8290834	+	asmbl_25914	none	STRG.23362.1	1	STRG.23362.4,Trinity_GG_12893_c0_g1_i2,blat.proc3829883.chain_458	3
scaffold_4	alt_donor	17021200	17021201	-	asmbl_41994	none	STRG.5297.1,blat.proc3829889.chain_1372	2	blat.proc3829889.chain_1376	1
scaffold_20	alt_donor	8033241	8033242	+	asmbl_25897,asmbl_25898	none	STRG.23341.3,STRG.23341.4	2	STRG.23341.1,STRG.23341.2	2
scaffold_7	ends_in_intron	4497869	4497869	-	asmbl_49679	none	Trinity_GG_22050_c0_g1_i4,blat.proc3829891.chain_1193	2	STRG.8813.1,STRG.8813.2,blat.proc3829891.chain_1190	3
scaffold_6	skipped_exon	14899596	14900520	+	asmbl_47583	none	STRG.8258.1,Trinity_GG_4552_c0_g1_i2,blat.proc3829875.chain_675	3	STRG.8258.3,blat.proc3829875.chain_678	2
scaffold_2	alt_acceptor	6633153	6633154	-	asmbl_23239,asmbl_23242,asmbl_23243,asmbl_23244,asmbl_23245	none	STRG.2025.1,Trinity_GG_18153_c0_g1_i8,blat.proc3829887.chain_1945,blat.proc3829887.chain_1946,blat.proc3829887.chain_1947,blat.proc3829887.chain_1948,blat.proc3829887.chain_1949	7	STRG.2025.2,STRG.2025.3	2
scaffold_26	starts_in_intron	2253166	2253166	+	asmbl_35267	none	Trinity_GG_15423_c2_g1_i1,blat.proc3829885.chain_937	2	STRG.27939.1,STRG.27939.2,blat.proc3829885.chain_934,blat.proc3829885.chain_935	4
scaffold_15	alt_donor	9858082	9858083	-	asmbl_15435	none	STRG.18491.3	1	STRG.18491.1,STRG.18491.2,STRG.18491.4,Trinity_GG_27412_c0_g1_i1,blat.proc3829895.chain_3275	5
scaffold_13	alt_acceptor	5869690	5869691	-	asmbl_9700	none	STRG.15884.2,blat.proc3829895.chain_652	2	STRG.15884.1	1
scaffold_6	starts_in_intron	3036911	3036911	-	asmbl_48163	none	blat.proc3829889.chain_3311	1	STRG.7304.1,blat.proc3829889.chain_3312	2
scaffold_13	ends_in_intron	7106189	7106189	+	asmbl_10999	none	Trinity_GG_8796_c0_g1_i11	1	STRG.15994.1,STRG.15994.2,blat.proc3829879.chain_723	3
scaffold_10	retained_intron	5535601	5535697	-	asmbl_3286	none	Trinity_GG_23905_c0_g1_i2,blat.proc3829893.chain_808	2	blat.proc3829893.chain_807	1
scaffold_16	skipped_exon	8463013	8463581	+	asmbl_17191	none	STRG.19459.2	1	STRG.19459.1	1
scaffold_12	starts_in_intron	5081255	5081255	+	asmbl_8603	none	blat.proc3829877.chain_3150	1	STRG.14667.1,blat.proc3829877.chain_3149,blat.proc3829877.chain_3151	3
scaffold_19	alt_donor	10637222	10637223	-	asmbl_21559	none	STRG.22400.2	1	STRG.22400.1,blat.proc3829897.chain_3046	2
scaffold_1	ends_in_intron	7299670	7299670	+	asmbl_1895	none	Trinity_GG_301_c0_g1_i3,blat.proc3829871.chain_536	2	STRG.528.1	1
scaffold_3	ends_in_intron	2871639	2871639	+	asmbl_39877	none	Trinity_GG_1713_c1_g1_i1,blat.proc3829871.chain_3201	2	STRG.3044.1,blat.proc3829871.chain_3197	2
scaffold_4	alt_acceptor	14679968	14679969	-	asmbl_41827	none	STRG.5103.3	1	STRG.5103.1,STRG.5103.2,blat.proc3829889.chain_1080	3
scaffold_14	alternate_exon	2476905	2477732	-	asmbl_12943	none	STRG.16844.1,Trinity_GG_26444_c0_g1_i2,Trinity_GG_26456_c0_g1_i3,blat.proc3829895.chain_1541,blat.proc3829895.chain_1560	5	STRG.16844.2	1
scaffold_1	spliced_intron	849299	849737	+	asmbl_1414,asmbl_1416,asmbl_1418	none	STRG.41.2,STRG.41.4,STRG.41.5,Trinity_GG_29_c0_g1_i1,Trinity_GG_29_c0_g1_i3,blat.proc3829871.chain_50,blat.proc3829871.chain_51	7	Trinity_GG_29_c0_g1_i4,blat.proc3829871.chain_53	2
scaffold_12	spliced_intron	16403693	16404417	+	asmbl_9131,asmbl_9134,asmbl_9136,asmbl_9137	none	STRG.15385.1,STRG.15385.2,STRG.15385.5,Trinity_GG_8419_c0_g1_i3,Trinity_GG_8419_c0_g1_i7,blat.proc3829877.chain_3732,blat.proc3829877.chain_3737,blat.proc3829877.chain_3738	8	STRG.15385.3,STRG.15385.4,STRG.15385.6,Trinity_GG_8419_c0_g2_i1,blat.proc3829877.chain_3739	5
scaffold_5	spliced_intron	1250555	1251453	-	asmbl_45235	none	STRG.5683.1,blat.proc3829889.chain_1782,blat.proc3829889.chain_1784	3	Trinity_GG_20219_c0_g1_i2,blat.proc3829889.chain_1780,blat.proc3829889.chain_1783	3
scaffold_4	starts_in_intron	6600389	6600389	+	asmbl_42748	none	STRG.4520.2	1	STRG.4520.1,blat.proc3829873.chain_857,blat.proc3829873.chain_858,blat.proc3829873.chain_860	4
scaffold_27	starts_in_intron	390986	390986	-	asmbl_36640	none	blat.proc3829901.chain_1733	1	STRG.28546.1,blat.proc3829901.chain_1732	2
scaffold_14	starts_in_intron	9276558	9276558	-	asmbl_13342,asmbl_13343,asmbl_13344	none	STRG.17323.3,STRG.17323.4,blat.proc3829895.chain_2001	3	STRG.17323.1,STRG.17323.2,blat.proc3829895.chain_1994,blat.proc3829895.chain_1995,blat.proc3829895.chain_1996,blat.proc3829895.chain_1998	6
scaffold_2	starts_in_intron	2599259	2599259	-	asmbl_22934	none	STRG.1713.1,blat.proc3829887.chain_1543	2	STRG.1713.2,Trinity_GG_17935_c0_g1_i2,blat.proc3829887.chain_1542	3
scaffold_17	alternate_exon	9031728	9038062	-	asmbl_19188,asmbl_19192	none	STRG.20520.3,STRG.20520.4	2	STRG.20520.2,blat.proc3829897.chain_1455	2
scaffold_8	retained_exon	14213087	14213163	-	asmbl_53307	none	STRG.10513.2,blat.proc3829891.chain_2646	2	STRG.10513.1	1
scaffold_13	retained_intron	14982062	14982116	-	asmbl_10184	none	STRG.16531.1	1	STRG.16531.2	1
scaffold_5	spliced_intron	18264036	18264289	+	asmbl_44892,asmbl_44893,asmbl_44896,asmbl_44897	none	STRG.6959.1,STRG.6959.2,blat.proc3829873.chain_3103,blat.proc3829873.chain_3105,blat.proc3829873.chain_3107,blat.proc3829873.chain_3109	6	Trinity_GG_3828_c0_g1_i3,blat.proc3829873.chain_3104	2
scaffold_22	alternate_exon	4364154	4364206	+	asmbl_29285	none	Trinity_GG_13729_c1_g1_i2,blat.proc3829883.chain_1870	2	STRG.24839.2	1
scaffold_13	starts_in_intron	5516001	5516001	+	asmbl_10844	none	blat.proc3829879.chain_466	1	STRG.15833.1,blat.proc3829879.chain_465	2
scaffold_3	retained_intron	19884864	19885175	-	asmbl_39617,asmbl_39618	none	Trinity_GG_19264_c1_g1_i6,blat.proc3829889.chain_139,blat.proc3829889.chain_144	3	STRG.4100.1,Trinity_GG_19264_c1_g1_i1,Trinity_GG_19264_c1_g1_i7,blat.proc3829889.chain_140,blat.proc3829889.chain_141	5
scaffold_4	retained_intron	13072234	13072389	-	asmbl_41710	none	blat.proc3829889.chain_1005	1	STRG.4956.1,blat.proc3829889.chain_1006	2
scaffold_3	starts_in_intron	15867634	15867634	+	asmbl_40550	none	Trinity_GG_2180_c0_g1_i2,blat.proc3829873.chain_277	2	STRG.3863.1,Trinity_GG_2180_c0_g1_i3,blat.proc3829873.chain_275,blat.proc3829873.chain_276	4
scaffold_15	retained_exon	4566580	4566617	+	asmbl_14103,asmbl_14105	none	STRG.18173.3,Trinity_GG_9942_c0_g1_i5,blat.proc3829879.chain_2743	3	STRG.18173.1,Trinity_GG_9942_c0_g1_i1,Trinity_GG_9942_c0_g1_i3,blat.proc3829879.chain_2742,blat.proc3829879.chain_2744	5
scaffold_2	starts_in_intron	15227673	15227673	+	asmbl_25014	none	STRG.2469.1	1	Trinity_GG_1401_c0_g1_i1,blat.proc3829871.chain_2641	2
scaffold_13	starts_in_intron	2291789	2291789	+	asmbl_10556	none	blat.proc3829879.chain_258	1	STRG.15531.1	1
scaffold_13	retained_intron	7109446	7110796	+	asmbl_10997,asmbl_11001	none	STRG.15994.1,Trinity_GG_8796_c0_g1_i5,Trinity_GG_8796_c0_g1_i9,blat.proc3829879.chain_723	4	STRG.15994.2	1
scaffold_15	retained_intron	15449482	15449702	+	asmbl_14738	none	Trinity_GG_10389_c0_g1_i2,Trinity_GG_10389_c0_g1_i6,blat.proc3829879.chain_3560,blat.proc3829879.chain_3563	4	STRG.18933.1,STRG.18933.2,Trinity_GG_10389_c0_g1_i7,blat.proc3829879.chain_3564,blat.proc3829879.chain_3565	5
scaffold_24	alt_acceptor	9679643	9679644	+	asmbl_32531	none	STRG.26936.1	1	blat.proc3829885.chain_89	1
scaffold_3	starts_in_intron	15764718	15764718	-	asmbl_39394	none	blat.proc3829887.chain_3658	1	STRG.3849.1,blat.proc3829887.chain_3659	2
scaffold_5	alt_acceptor	17297537	17297538	+	asmbl_44820,asmbl_44821	none	STRG.6893.2,STRG.6893.3,blat.proc3829873.chain_3048	3	STRG.6893.1,blat.proc3829873.chain_3049	2
scaffold_27	skipped_exon	626799	628881	-	asmbl_36655	none	STRG.28563.3,blat.proc3829901.chain_1754	2	STRG.28563.1,STRG.28563.2,STRG.28563.4,blat.proc3829901.chain_1749,blat.proc3829901.chain_1752	5
scaffold_6	retained_intron	5752193	5752361	+	asmbl_46917	none	blat.proc3829873.chain_3644	1	STRG.7525.1,STRG.7525.2,blat.proc3829873.chain_3647	3
scaffold_13	starts_in_intron	8288008	8288008	+	asmbl_11101	none	STRG.16106.2	1	STRG.16106.1,blat.proc3829879.chain_856	2
scaffold_11	spliced_intron	1985399	1985437	+	asmbl_5309	none	blat.proc3829893.chain_1765	1	STRG.13350.1	1
scaffold_5	starts_in_intron	2535767	2535767	+	asmbl_43838	none	blat.proc3829873.chain_1954	1	STRG.5769.1,blat.proc3829873.chain_1953,blat.proc3829873.chain_1955	3
scaffold_11	retained_exon	2101163	2101254	-	asmbl_6450	none	STRG.13364.3,blat.proc3829893.chain_1826	2	STRG.13364.1,blat.proc3829893.chain_1824,blat.proc3829893.chain_1827	3
scaffold_6	alt_acceptor	14087942	14087943	+	asmbl_47509	none	STRG.8167.1,blat.proc3829875.chain_585,blat.proc3829875.chain_586	3	STRG.8167.2	1
scaffold_5	starts_in_intron	8763431	8763431	-	asmbl_45620	none	blat.proc3829889.chain_2289	1	STRG.6204.1,STRG.6204.2,Trinity_GG_20507_c0_g1_i1,Trinity_GG_20507_c0_g1_i3,Trinity_GG_20507_c0_g1_i4,blat.proc3829889.chain_2287,blat.proc3829889.chain_2288,blat.proc3829889.chain_2290	8
scaffold_6	retained_intron	13573776	13573887	-	asmbl_48853	none	Trinity_GG_21620_c1_g1_i2,blat.proc3829891.chain_417	2	STRG.8093.2,STRG.8093.3,STRG.8093.4,Trinity_GG_21620_c1_g1_i1,blat.proc3829891.chain_414,blat.proc3829891.chain_416	6
scaffold_24	spliced_intron	718962	719078	+	asmbl_32046,asmbl_32047	none	STRG.26330.2,blat.proc3829883.chain_3214	2	STRG.26330.1,Trinity_GG_14530_c0_g1_i4,blat.proc3829883.chain_3213,blat.proc3829883.chain_3215	4
scaffold_7	retained_intron	13204588	13204713	+	asmbl_51194	none	Trinity_GG_5219_c0_g1_i5,blat.proc3829875.chain_1852	2	STRG.9419.1,STRG.9419.2,STRG.9419.3,Trinity_GG_5219_c0_g1_i8,blat.proc3829875.chain_1853,blat.proc3829875.chain_1854,blat.proc3829875.chain_1856	7
scaffold_28	spliced_intron	5024248	5024400	+	asmbl_38258,asmbl_38260,asmbl_38266	none	STRG.29640.1,STRG.29640.2,blat.proc3829885.chain_2641,blat.proc3829885.chain_2642	4	STRG.29640.3,Trinity_GG_16373_c2_g1_i2,blat.proc3829885.chain_2640	3
scaffold_14	retained_exon	11221099	11221501	-	asmbl_13440	none	blat.proc3829895.chain_2152	1	STRG.17441.1,blat.proc3829895.chain_2153	2
scaffold_10	starts_in_intron	3786011	3786011	+	asmbl_4352	none	Trinity_GG_6750_c2_g1_i1,blat.proc3829877.chain_846	2	STRG.12213.1	1
scaffold_18	alt_acceptor	1924054	1924055	+	asmbl_20419	none	STRG.21073.1	1	STRG.21073.2,STRG.21073.3,blat.proc3829881.chain_1933	3
scaffold_11	retained_intron	8790313	8790358	-	asmbl_6860	none	STRG.13891.2	1	STRG.13891.4	1
scaffold_17	retained_exon	13973355	13973375	-	asmbl_19443,asmbl_19444,asmbl_19446	none	STRG.20876.1,STRG.20876.2,blat.proc3829897.chain_1764,blat.proc3829897.chain_1766	4	STRG.20876.4	1
scaffold_1	skipped_exon	18763264	18765210	+	asmbl_2556	none	STRG.1310.2	1	STRG.1310.3	1
scaffold_723	starts_in_intron	3429	3429	-	asmbl_51572	none	blat.proc3829901.chain_3461	1	STRG.30418.1,STRG.30418.2,blat.proc3829901.chain_3463	3
scaffold_24	starts_in_intron	4319568	4319568	+	asmbl_32203	none	Trinity_GG_14664_c0_g1_i2,blat.proc3829883.chain_3427	2	STRG.26578.2,Trinity_GG_14664_c0_g1_i1,blat.proc3829883.chain_3428	3
scaffold_4	retained_intron	4416472	4417029	+	asmbl_42574,asmbl_42575,asmbl_42583,asmbl_42584,asmbl_42586,asmbl_42587,asmbl_42590	none	Trinity_GG_2404_c0_g1_i10,Trinity_GG_2404_c0_g1_i19,blat.proc3829873.chain_681,blat.proc3829873.chain_685,blat.proc3829873.chain_686,blat.proc3829873.chain_687,blat.proc3829873.chain_689,blat.proc3829873.chain_690,blat.proc3829873.chain_698	9	STRG.4344.4,Trinity_GG_2404_c0_g1_i5,blat.proc3829873.chain_680,blat.proc3829873.chain_696,blat.proc3829873.chain_697	5
scaffold_4	retained_intron	13723093	13723242	-	asmbl_41745	none	STRG.4993.1,blat.proc3829889.chain_1045	2	blat.proc3829889.chain_1046	1
scaffold_8	spliced_intron	16141006	16141091	-	asmbl_53369,asmbl_53370,asmbl_53372	none	STRG.10597.1,blat.proc3829891.chain_2741,blat.proc3829891.chain_2742,blat.proc3829891.chain_2745	4	blat.proc3829891.chain_2743	1
scaffold_5	alt_acceptor	18221513	18221514	+	asmbl_44876,asmbl_44877,asmbl_44878,asmbl_44879,asmbl_44881	none	STRG.6950.1,STRG.6950.2,STRG.6950.3,STRG.6950.5,blat.proc3829873.chain_3088,blat.proc3829873.chain_3089	6	STRG.6950.4	1
scaffold_28	alt_acceptor	2190089	2190090	-	asmbl_37341	none	STRG.29363.2,blat.proc3829901.chain_2412	2	STRG.29363.1	1
scaffold_27	alt_acceptor	3099925	3099926	-	asmbl_36850	none	STRG.28773.1,blat.proc3829901.chain_1984	2	STRG.28773.2,blat.proc3829901.chain_1983	2
scaffold_11	retained_exon	8898170	8898282	-	asmbl_6867	none	STRG.13898.2	1	STRG.13898.1	1
scaffold_6	retained_intron	5265077	5265171	+	asmbl_46878	none	Trinity_GG_4102_c0_g1_i6,blat.proc3829873.chain_3607	2	STRG.7492.2,blat.proc3829873.chain_3608	2
scaffold_9	retained_exon	7750057	7750345	+	asmbl_54119	none	STRG.11212.1,Trinity_GG_6263_c1_g1_i3,blat.proc3829875.chain_3733,blat.proc3829875.chain_3734,blat.proc3829875.chain_3735	5	blat.proc3829875.chain_3736	1
scaffold_9	alternate_exon	6438873	6438944	-	asmbl_55023	none	STRG.11169.2	1	STRG.11169.1,STRG.11169.3,blat.proc3829891.chain_3318	3
scaffold_8	ends_in_intron	9110455	9110455	+	asmbl_52036	none	Trinity_GG_5616_c0_g1_i2,blat.proc3829875.chain_2600	2	STRG.10158.1,blat.proc3829875.chain_2599	2
scaffold_14	alternate_exon	15609159	15609442	-	asmbl_13714	none	STRG.17786.3	1	STRG.17786.1,blat.proc3829895.chain_2503	2
scaffold_21	retained_exon	58223	58306	-	asmbl_27298,asmbl_27300	none	STRG.23706.1,STRG.23706.3,blat.proc3829899.chain_734,blat.proc3829899.chain_736	4	STRG.23706.2,blat.proc3829899.chain_735	2
scaffold_1	spliced_intron	13890935	13891127	+	asmbl_2303,asmbl_2304,asmbl_2308	none	STRG.994.1,STRG.994.2,blat.proc3829871.chain_1082,blat.proc3829871.chain_1086,blat.proc3829871.chain_1087	5	blat.proc3829871.chain_1084	1
scaffold_8	alt_acceptor	16386864	16386865	+	asmbl_52440	none	STRG.10611.2,Trinity_GG_5913_c0_g1_i3,blat.proc3829875.chain_3144	3	STRG.10611.1,STRG.10611.3,Trinity_GG_5913_c0_g1_i2,Trinity_GG_5913_c0_g1_i4,Trinity_GG_5913_c0_g1_i5,blat.proc3829875.chain_3141,blat.proc3829875.chain_3143,blat.proc3829875.chain_3145	8
scaffold_7	alternate_exon	11873681	11873714	-	asmbl_49983	none	Trinity_GG_22229_c0_g1_i5,blat.proc3829891.chain_1490	2	STRG.9297.1,STRG.9297.2	2
scaffold_8	spliced_intron	16278978	16279098	-	asmbl_53386	none	STRG.10612.1,blat.proc3829891.chain_2750	2	STRG.10612.2,STRG.10612.4,blat.proc3829891.chain_2748	3
scaffold_3	skipped_exon	16076915	16079016	-	asmbl_39425	none	STRG.3885.4	1	STRG.3885.1,STRG.3885.2,STRG.3885.3,blat.proc3829887.chain_3684,blat.proc3829887.chain_3685	5
scaffold_20	retained_intron	1107445	1107556	-	asmbl_26469	none	blat.proc3829897.chain_3592	1	blat.proc3829897.chain_3591	1
scaffold_18	starts_in_intron	3606490	3606490	+	asmbl_20490	none	STRG.21167.4	1	STRG.21167.1,STRG.21167.2,STRG.21167.3,blat.proc3829881.chain_2055	4
scaffold_21	spliced_intron	457511	457733	-	asmbl_27350	none	STRG.23726.1,blat.proc3829899.chain_765	2	Trinity_GG_30227_c0_g1_i3,blat.proc3829899.chain_764	2
scaffold_24	alt_acceptor	9952412	9952413	-	asmbl_33146,asmbl_33147,asmbl_33150,asmbl_33153	none	STRG.26947.1,STRG.26947.3,Trinity_GG_32087_c0_g1_i5,blat.proc3829901.chain_248,blat.proc3829901.chain_249	5	STRG.26947.4,STRG.26947.8,blat.proc3829901.chain_250	3
scaffold_14	alternate_exon	1158672	1158755	+	asmbl_11785	none	STRG.16763.2	1	STRG.16763.1,Trinity_GG_9199_c0_g1_i1,blat.proc3829879.chain_1429	3
scaffold_11	alternate_exon	8624177	8624352	-	asmbl_6847	none	STRG.13867.1,Trinity_GG_24760_c0_g1_i1,blat.proc3829893.chain_2298	3	STRG.13867.2,Trinity_GG_24760_c0_g1_i2	2
scaffold_13	alt_donor	11580943	11580944	+	asmbl_11265,asmbl_11267	none	STRG.16293.2,blat.proc3829879.chain_1062,blat.proc3829879.chain_1064	3	STRG.16293.1,STRG.16293.3,blat.proc3829879.chain_1061	3
scaffold_8	ends_in_intron	5618485	5618485	-	asmbl_52832	none	blat.proc3829891.chain_2122	1	STRG.9972.1,blat.proc3829891.chain_2121	2
scaffold_4	retained_exon	7267216	7267305	+	asmbl_42818,asmbl_42821	none	STRG.4560.4,STRG.4560.6,Trinity_GG_2542_c0_g1_i3,blat.proc3829873.chain_959	4	STRG.4560.2,Trinity_GG_2542_c0_g1_i1,blat.proc3829873.chain_958	3
scaffold_23	starts_in_intron	5843859	5843859	-	asmbl_31665	none	blat.proc3829899.chain_3052	1	STRG.25933.1,blat.proc3829899.chain_3053	2
scaffold_8	spliced_intron	6036917	6037004	+	asmbl_51916	none	STRG.10001.1,Trinity_GG_5571_c0_g1_i1,blat.proc3829875.chain_2508	3	Trinity_GG_5571_c0_g1_i2,Trinity_GG_5571_c0_g1_i3,blat.proc3829875.chain_2505,blat.proc3829875.chain_2507	4
scaffold_23	alt_acceptor	362282	362283	-	asmbl_31319	none	blat.proc3829899.chain_2649	1	STRG.25543.3,blat.proc3829899.chain_2656	2
scaffold_11	alt_acceptor	8079241	8079242	-	asmbl_6807	none	Trinity_GG_24711_c0_g1_i4,blat.proc3829893.chain_2202	2	STRG.13802.2,STRG.13802.3,Trinity_GG_24711_c0_g1_i3,Trinity_GG_24711_c0_g1_i7,Trinity_GG_24711_c0_g1_i8,blat.proc3829893.chain_2198,blat.proc3829893.chain_2205,blat.proc3829893.chain_2209,blat.proc3829893.chain_2210,blat.proc3829893.chain_2211	10
scaffold_4	ends_in_intron	19522058	19522058	-	asmbl_42197	none	blat.proc3829889.chain_1552	1	STRG.5535.1,blat.proc3829889.chain_1550,blat.proc3829889.chain_1551,blat.proc3829889.chain_1553	4
scaffold_1	alternate_exon	20757070	20757415	+	asmbl_2641	none	blat.proc3829871.chain_1473	1	STRG.1421.2,blat.proc3829871.chain_1474,blat.proc3829871.chain_1475	3
scaffold_26	alt_donor	9918590	9918591	-	asmbl_35074	none	STRG.28506.3	1	STRG.28506.1,STRG.28506.2,Trinity_GG_32924_c0_g1_i4,blat.proc3829901.chain_1611,blat.proc3829901.chain_1613	5
scaffold_18	alternate_exon	4762387	4769669	+	asmbl_20585,asmbl_20589,asmbl_20591	none	STRG.21260.1,STRG.21260.2,STRG.21260.5,Trinity_GG_11674_c0_g1_i1,blat.proc3829881.chain_2085,blat.proc3829881.chain_2087,blat.proc3829881.chain_2088	7	Trinity_GG_11674_c0_g2_i2,blat.proc3829881.chain_2091	2
scaffold_17	spliced_intron	538675	539181	+	asmbl_17669,asmbl_17676	none	STRG.19892.2,blat.proc3829881.chain_742,blat.proc3829881.chain_743	3	STRG.19892.3,blat.proc3829881.chain_739,blat.proc3829881.chain_740	3
scaffold_23	alternate_exon	246227	246311	-	asmbl_31288	none	STRG.25528.2,blat.proc3829899.chain_2631	2	STRG.25528.1,STRG.25528.3,blat.proc3829899.chain_2628,blat.proc3829899.chain_2629	4
scaffold_22	alt_donor	4288161	4288162	-	asmbl_30005	none	STRG.24837.3	1	blat.proc3829899.chain_1953	1
scaffold_7	ends_in_intron	5097387	5097387	+	asmbl_50667	none	Trinity_GG_4865_c0_g2_i1,blat.proc3829875.chain_1258	2	STRG.8843.1,blat.proc3829875.chain_1257	2
scaffold_10	spliced_intron	3159617	3159862	+	asmbl_4308,asmbl_4310	none	STRG.12137.1,blat.proc3829877.chain_833,blat.proc3829877.chain_834	3	STRG.12137.2,blat.proc3829877.chain_835	2
scaffold_6	retained_intron	17886425	17886621	+	asmbl_47737	none	STRG.8475.2,Trinity_GG_4642_c0_g1_i4,blat.proc3829875.chain_830	3	STRG.8475.3,Trinity_GG_4642_c0_g1_i1,blat.proc3829875.chain_827	3
scaffold_14	retained_exon	209954	210056	-	asmbl_12778	none	STRG.16702.1,Trinity_GG_26362_c0_g1_i3,blat.proc3829895.chain_1403	3	STRG.16702.3,Trinity_GG_26362_c0_g1_i5,blat.proc3829895.chain_1405	3
scaffold_10	alt_acceptor	13883400	13883401	+	asmbl_4897	none	STRG.12962.2,Trinity_GG_7145_c0_g1_i4,blat.proc3829877.chain_1542	3	STRG.12962.1,blat.proc3829877.chain_1540,blat.proc3829877.chain_1541	3
scaffold_8	alt_acceptor	4799726	4799727	-	asmbl_52791	none	STRG.9932.2	1	STRG.9932.1,Trinity_GG_22560_c0_g1_i2,blat.proc3829891.chain_2101	3
scaffold_2	spliced_intron	3899965	3900066	+	asmbl_24337,asmbl_24338,asmbl_24340	none	STRG.1831.1,STRG.1831.2,STRG.1831.3,blat.proc3829871.chain_1839,blat.proc3829871.chain_1842,blat.proc3829871.chain_1843	6	blat.proc3829871.chain_1840	1
scaffold_19	alternate_exon	4792848	4793125	-	asmbl_21336	none	STRG.22043.3,Trinity_GG_29309_c0_g1_i3,blat.proc3829897.chain_2801	3	STRG.22043.1,Trinity_GG_29309_c0_g1_i2,blat.proc3829897.chain_2802	3
scaffold_26	starts_in_intron	10099067	10099067	-	asmbl_35084	none	blat.proc3829901.chain_1637	1	STRG.28512.1,STRG.28512.2,blat.proc3829901.chain_1638	3
scaffold_11	retained_intron	13384103	13384406	+	asmbl_6030,asmbl_6031,asmbl_6032	none	STRG.14189.1,STRG.14189.3,blat.proc3829877.chain_2694	3	STRG.14189.2,blat.proc3829877.chain_2692	2
scaffold_8	alt_donor	3762006	3762007	+	asmbl_51788	none	STRG.9855.2	1	STRG.9855.1	1
scaffold_8	skipped_exon	4665045	4665532	-	asmbl_52777	none	blat.proc3829891.chain_2073	1	STRG.9919.1,blat.proc3829891.chain_2074	2
scaffold_2	starts_in_intron	19773282	19773282	+	asmbl_25322	none	blat.proc3829871.chain_2982	1	STRG.2825.1,STRG.2825.2,blat.proc3829871.chain_2983,blat.proc3829871.chain_2984,blat.proc3829871.chain_2985	5
scaffold_27	alt_acceptor	2841513	2841514	+	asmbl_36090	none	STRG.28746.1,blat.proc3829885.chain_1805	2	blat.proc3829885.chain_1806	1
scaffold_20	alternate_exon	6652518	6655138	-	asmbl_26764	none	blat.proc3829899.chain_280,blat.proc3829899.chain_283	2	Trinity_GG_29984_c1_g1_i2,blat.proc3829899.chain_282	2
scaffold_24	alternate_exon	10132701	10132742	+	asmbl_32546	none	STRG.26962.4	1	STRG.26962.2,blat.proc3829885.chain_42	2
scaffold_26	alt_acceptor	5891472	5891473	+	asmbl_35580	none	blat.proc3829885.chain_1314	1	STRG.28280.1,blat.proc3829885.chain_1312	2
scaffold_20	ends_in_intron	7182363	7182363	+	asmbl_25853	none	blat.proc3829883.chain_342	1	STRG.23273.1,blat.proc3829883.chain_345	2
scaffold_1	retained_intron	5957952	5958646	+	asmbl_1790	none	STRG.392.2,Trinity_GG_229_c0_g1_i1,blat.proc3829871.chain_387	3	STRG.392.1,Trinity_GG_229_c0_g1_i2,blat.proc3829871.chain_386	3
scaffold_22	skipped_exon	9718656	9721616	+	asmbl_29601	none	STRG.25292.4	1	STRG.25292.1,STRG.25292.2,STRG.25292.3,blat.proc3829883.chain_2231	4
scaffold_3	spliced_intron	14559144	14559490	-	asmbl_39344	none	STRG.3794.2,Trinity_GG_19116_c0_g1_i1,blat.proc3829887.chain_3610	3	STRG.3794.1,Trinity_GG_19116_c0_g1_i2,blat.proc3829887.chain_3609	3
scaffold_11	alt_acceptor	15711206	15711207	+	asmbl_6107	none	blat.proc3829877.chain_2783	1	STRG.14304.1,blat.proc3829877.chain_2782,blat.proc3829877.chain_2784	3
scaffold_6	alt_donor	7543847	7543848	+	asmbl_47014	none	STRG.7648.1,blat.proc3829875.chain_2	2	STRG.7648.2,blat.proc3829875.chain_3	2
scaffold_14	alt_donor	7286019	7286020	+	asmbl_12122	none	STRG.17150.1,blat.proc3829879.chain_1823	2	STRG.17150.2,blat.proc3829879.chain_1824	2
scaffold_3	starts_in_intron	17241987	17241987	+	asmbl_40623	none	Trinity_GG_2215_c0_g1_i1	1	STRG.3954.1	1
scaffold_20	starts_in_intron	11079629	11079629	-	asmbl_27057	none	blat.proc3829899.chain_626	1	STRG.23611.1,STRG.23611.2,blat.proc3829899.chain_622,blat.proc3829899.chain_624,blat.proc3829899.chain_625,blat.proc3829899.chain_627	6
scaffold_5	skipped_exon	16843967	16846235	-	asmbl_46158	none	STRG.6862.1,blat.proc3829889.chain_2857	2	STRG.6862.3,blat.proc3829889.chain_2856	2
scaffold_5	starts_in_intron	15563614	15563614	-	asmbl_46086	none	blat.proc3829889.chain_2821	1	STRG.6744.1,blat.proc3829889.chain_2818,blat.proc3829889.chain_2819,blat.proc3829889.chain_2820	4
scaffold_19	spliced_intron	5345825	5345940	-	asmbl_21357,asmbl_21358	none	STRG.22090.2,STRG.22090.3,blat.proc3829897.chain_2876,blat.proc3829897.chain_2877	4	STRG.22090.1	1
scaffold_7	starts_in_intron	3378428	3378428	+	asmbl_50565	none	Trinity_GG_4818_c0_g1_i1,blat.proc3829875.chain_1179	2	STRG.8731.1,Trinity_GG_4818_c0_g1_i2,blat.proc3829875.chain_1180	3
scaffold_16	starts_in_intron	10085966	10085966	+	asmbl_17315	none	Trinity_GG_10741_c0_g1_i2,blat.proc3829881.chain_473	2	Trinity_GG_10741_c0_g1_i3,Trinity_GG_10741_c0_g1_i4,blat.proc3829881.chain_475,blat.proc3829881.chain_476	4
scaffold_12	retained_intron	10187619	10187770	-	asmbl_7862,asmbl_7863,asmbl_7864	none	STRG.14979.3,STRG.14979.4,blat.proc3829893.chain_3402	3	STRG.14979.5,blat.proc3829893.chain_3400	2
scaffold_14	alt_donor	11341230	11341231	-	asmbl_13454	none	STRG.17450.1	1	STRG.17450.2,blat.proc3829895.chain_2082,blat.proc3829895.chain_2083	3
scaffold_4	starts_in_intron	17129377	17129377	-	asmbl_42008	none	Trinity_GG_19982_c0_g1_i2,blat.proc3829889.chain_1384	2	STRG.5313.1,blat.proc3829889.chain_1385	2
scaffold_8	retained_exon	11110926	11111044	+	asmbl_52185	none	STRG.10317.3,blat.proc3829875.chain_2831	2	STRG.10317.1,blat.proc3829875.chain_2832	2
scaffold_21	skipped_exon	9706312	9707776	-	asmbl_27983	none	STRG.24416.2	1	STRG.24416.1	1
scaffold_5	retained_intron	10170936	10171022	+	asmbl_44334	none	blat.proc3829873.chain_2377	1	STRG.6310.1,blat.proc3829873.chain_2380	2
scaffold_2	alt_acceptor	3805857	3805858	-	asmbl_23029	none	STRG.1821.1,blat.proc3829887.chain_1645	2	STRG.1821.2	1
scaffold_19	ends_in_intron	8746461	8746461	+	asmbl_22347	none	blat.proc3829881.chain_3236	1	STRG.22311.2	1
scaffold_7	skipped_exon	8302442	8303074	+	asmbl_50868	none	STRG.9055.1,blat.proc3829875.chain_1486	2	blat.proc3829875.chain_1485	1
scaffold_2	alt_acceptor	9862332	9862333	-	asmbl_23411	none	STRG.2190.3	1	STRG.2190.1,blat.proc3829887.chain_2112	2
scaffold_2	retained_intron	899505	899602	+	asmbl_24164,asmbl_24169	none	Trinity_GG_900_c0_g1_i3,Trinity_GG_900_c0_g1_i5	2	STRG.1568.1,STRG.1568.2,Trinity_GG_900_c0_g1_i4,blat.proc3829871.chain_1642,blat.proc3829871.chain_1644	5
scaffold_2	alt_donor	2075063	2075064	+	asmbl_24258	none	STRG.1663.1,Trinity_GG_950_c0_g1_i1,blat.proc3829871.chain_1748	3	STRG.1663.2,Trinity_GG_950_c0_g1_i3,blat.proc3829871.chain_1747	3
scaffold_13	alternate_exon	5281877	5281955	-	asmbl_9642	none	STRG.15810.1,Trinity_GG_25890_c0_g1_i1,blat.proc3829895.chain_552	3	STRG.15810.2	1
scaffold_11	retained_intron	17375833	17376038	+	asmbl_6204	none	Trinity_GG_7898_c0_g1_i3,blat.proc3829877.chain_2827	2	STRG.14392.1,STRG.14392.2,blat.proc3829877.chain_2826	3
scaffold_6	skipped_exon	2880569	2881381	-	asmbl_48128	none	blat.proc3829889.chain_3250	1	STRG.7279.1,STRG.7279.2,blat.proc3829889.chain_3249,blat.proc3829889.chain_3251	4
scaffold_13	alt_acceptor	522225	522226	+	asmbl_10453	none	Trinity_GG_8491_c0_g1_i4,blat.proc3829879.chain_112	2	STRG.15434.1,STRG.15434.2,STRG.15434.3,STRG.15434.4,STRG.15434.5,Trinity_GG_8491_c0_g1_i1,blat.proc3829879.chain_110,blat.proc3829879.chain_111,blat.proc3829879.chain_114,blat.proc3829879.chain_115,blat.proc3829879.chain_116	11
scaffold_56	alt_acceptor	7802	7803	-	asmbl_46523	none	STRG.30051.1,Trinity_GG_33867_c0_g1_i1	2	STRG.30051.2	1
scaffold_5	retained_exon	9811654	9811747	+	asmbl_44311,asmbl_44314	none	STRG.6289.3,STRG.6289.5	2	STRG.6289.1,blat.proc3829873.chain_2411	2
scaffold_11	alt_acceptor	9151127	9151128	+	asmbl_5833,asmbl_5834	none	STRG.13940.1,STRG.13940.2,blat.proc3829877.chain_2458,blat.proc3829877.chain_2459,blat.proc3829877.chain_2460	5	STRG.13940.3	1
scaffold_4	spliced_intron	17115130	17115304	+	asmbl_43375	none	STRG.5308.4	1	Trinity_GG_2943_c0_g1_i5	1
scaffold_20	spliced_intron	1664651	1664742	+	asmbl_25595	none	STRG.22894.2	1	STRG.22894.1,blat.proc3829881.chain_3707,blat.proc3829881.chain_3708	3
scaffold_11	alternate_exon	16255929	16256272	+	asmbl_6126	none	STRG.14318.2	1	STRG.14318.3	1
scaffold_25	retained_intron	9431822	9432003	+	asmbl_33804	none	Trinity_GG_15317_c1_g1_i2,blat.proc3829885.chain_782	2	STRG.27738.3	1
scaffold_9	ends_in_intron	5709459	5709459	-	asmbl_54988	none	blat.proc3829891.chain_3290	1	STRG.11129.1,blat.proc3829891.chain_3289	2
scaffold_15	starts_in_intron	4234962	4234962	+	asmbl_14079	none	blat.proc3829879.chain_2794	1	STRG.18154.1,blat.proc3829879.chain_2793	2
scaffold_6	ends_in_intron	13983102	13983102	-	asmbl_48911	none	blat.proc3829891.chain_458	1	STRG.8147.1,blat.proc3829891.chain_452,blat.proc3829891.chain_453	3
scaffold_7	alternate_exon	13867545	13867874	-	asmbl_50135	none	STRG.9469.1,Trinity_GG_22309_c1_g1_i1,blat.proc3829891.chain_1679	3	blat.proc3829891.chain_1673,blat.proc3829891.chain_1674	2
scaffold_7	alt_donor	13213393	13213394	+	asmbl_51201	none	STRG.9420.3	1	STRG.9420.4,blat.proc3829875.chain_1879	2
scaffold_27	retained_intron	6742224	6742264	+	asmbl_36367,asmbl_36368	none	Trinity_GG_16067_c0_g1_i1,blat.proc3829885.chain_2157,blat.proc3829885.chain_2158	3	STRG.29031.1	1
scaffold_13	spliced_intron	6396468	6396589	+	asmbl_10907,asmbl_10908,asmbl_10910,asmbl_10911,asmbl_10915	none	STRG.15914.2,STRG.15914.3,STRG.15914.4,Trinity_GG_8718_c0_g1_i3,Trinity_GG_8718_c0_g1_i4,Trinity_GG_8718_c0_g1_i8,Trinity_GG_8718_c0_g1_i9,blat.proc3829879.chain_550,blat.proc3829879.chain_552,blat.proc3829879.chain_554,blat.proc3829879.chain_556	11	Trinity_GG_8718_c0_g1_i2,Trinity_GG_8718_c0_g1_i5,blat.proc3829879.chain_549,blat.proc3829879.chain_555	4
scaffold_7	starts_in_intron	12634165	12634165	-	asmbl_50072	none	blat.proc3829891.chain_1590	1	STRG.9365.1	1
scaffold_11	retained_exon	8079171	8079244	-	asmbl_6800,asmbl_6802,asmbl_6805,asmbl_6806,asmbl_6808,asmbl_6817	none	STRG.13802.2,STRG.13802.3,Trinity_GG_24711_c0_g1_i3,Trinity_GG_24711_c0_g1_i7,Trinity_GG_24711_c0_g1_i8,blat.proc3829893.chain_2198,blat.proc3829893.chain_2205,blat.proc3829893.chain_2209,blat.proc3829893.chain_2210,blat.proc3829893.chain_2211	10	STRG.13802.4,STRG.13802.5,Trinity_GG_24711_c0_g1_i13,Trinity_GG_24711_c0_g1_i17,Trinity_GG_24711_c0_g1_i18,blat.proc3829893.chain_2197,blat.proc3829893.chain_2204,blat.proc3829893.chain_2206,blat.proc3829893.chain_2208	9
scaffold_3	ends_in_intron	13991607	13991607	+	asmbl_40439	none	blat.proc3829873.chain_91	1	STRG.3741.1,STRG.3741.2,STRG.3741.3,STRG.3741.4,Trinity_GG_2070_c1_g1_i2,blat.proc3829873.chain_92	6
scaffold_27	alternate_exon	4243301	4243336	+	asmbl_36226	none	STRG.28864.1,Trinity_GG_15969_c0_g1_i1,blat.proc3829885.chain_1933	3	STRG.28864.2,blat.proc3829885.chain_1934	2
scaffold_14	spliced_intron	8452011	8452120	-	asmbl_13299	none	Trinity_GG_26716_c0_g1_i2	1	Trinity_GG_26716_c0_g1_i3	1
scaffold_10	alt_acceptor	14691916	14691917	+	asmbl_4920,asmbl_4924	none	STRG.13008.1,STRG.13008.2,blat.proc3829877.chain_1537	3	STRG.13008.3,blat.proc3829877.chain_1535	2
scaffold_17	retained_intron	8044838	8044930	-	asmbl_19111,asmbl_19113	none	STRG.20411.1,Trinity_GG_28502_c0_g1_i3,blat.proc3829897.chain_1390,blat.proc3829897.chain_1391	4	STRG.20411.2,blat.proc3829897.chain_1392	2
scaffold_15	spliced_intron	9732951	9733059	-	asmbl_15425,asmbl_15427	none	STRG.18480.1,STRG.18480.2,blat.proc3829895.chain_3131	3	Trinity_GG_27344_c0_g1_i5	1
scaffold_9	spliced_intron	14818996	14819592	-	asmbl_55458,asmbl_55461	none	STRG.11693.1,Trinity_GG_23432_c0_g1_i1,blat.proc3829893.chain_10,blat.proc3829893.chain_4	4	blat.proc3829893.chain_5	1
scaffold_7	retained_intron	4544752	4545008	+	asmbl_50629	none	blat.proc3829875.chain_1243	1	STRG.8819.1,blat.proc3829875.chain_1241,blat.proc3829875.chain_1242,blat.proc3829875.chain_1244	4
scaffold_4	spliced_intron	5231186	5231400	-	asmbl_41309,asmbl_41310,asmbl_41314	none	STRG.4417.2,STRG.4417.3,STRG.4417.5,blat.proc3829889.chain_436,blat.proc3829889.chain_437	5	Trinity_GG_19430_c0_g1_i1,blat.proc3829889.chain_438,blat.proc3829889.chain_440	3
scaffold_19	retained_intron	13220754	13221798	-	asmbl_21834,asmbl_21843	none	Trinity_GG_29598_c1_g1_i4,blat.proc3829897.chain_3366,blat.proc3829897.chain_3370	3	STRG.22682.1,STRG.22682.3,Trinity_GG_29598_c1_g1_i7,blat.proc3829897.chain_3359,blat.proc3829897.chain_3360,blat.proc3829897.chain_3363,blat.proc3829897.chain_3368	7
scaffold_15	skipped_exon	6956898	6957812	-	asmbl_15293	none	STRG.18291.4	1	STRG.18291.1,STRG.18291.2,STRG.18291.3,blat.proc3829895.chain_3051,blat.proc3829895.chain_3052,blat.proc3829895.chain_3053,blat.proc3829895.chain_3054	7
scaffold_5	spliced_intron	8776863	8776953	-	asmbl_45624	none	STRG.6208.1,blat.proc3829889.chain_2258	2	Trinity_GG_20483_c0_g1_i1,blat.proc3829889.chain_2257	2
scaffold_9	alt_acceptor	12493867	12493868	-	asmbl_55344	none	STRG.11560.2	1	STRG.11560.1,blat.proc3829891.chain_3645	2
scaffold_7	starts_in_intron	15270513	15270513	+	asmbl_51319	none	blat.proc3829875.chain_1982	1	STRG.9532.1,STRG.9532.2,STRG.9532.4,STRG.9532.5,blat.proc3829875.chain_1981,blat.proc3829875.chain_1984,blat.proc3829875.chain_1985,blat.proc3829875.chain_1986,blat.proc3829875.chain_1987	9
scaffold_4	spliced_intron	8619480	8619572	-	asmbl_41519	none	STRG.4679.1,blat.proc3829889.chain_739,blat.proc3829889.chain_740	3	blat.proc3829889.chain_741	1
scaffold_19	retained_intron	12491455	12492135	+	asmbl_22615	none	STRG.22568.3,blat.proc3829881.chain_3534	2	blat.proc3829881.chain_3538	1
scaffold_6	alt_acceptor	17443871	17443872	+	asmbl_47691	none	STRG.8437.1,Trinity_GG_4610_c0_g1_i1,blat.proc3829875.chain_778	3	STRG.8437.2	1
scaffold_28	spliced_intron	2265643	2266048	-	asmbl_37346,asmbl_37348,asmbl_37349,asmbl_37351	none	STRG.29380.1,STRG.29380.2,STRG.29380.3,Trinity_GG_33458_c0_g1_i4,blat.proc3829901.chain_2467,blat.proc3829901.chain_2468,blat.proc3829901.chain_2469,blat.proc3829901.chain_2470	8	STRG.29380.4,blat.proc3829901.chain_2471	2
scaffold_18	alt_acceptor	1860117	1860118	+	asmbl_20410	none	STRG.21062.1,blat.proc3829881.chain_1895	2	STRG.21062.2,blat.proc3829881.chain_1894	2
scaffold_4	alt_donor	17503665	17503666	-	asmbl_42027	none	STRG.5337.2,blat.proc3829889.chain_1339	2	STRG.5337.1,blat.proc3829889.chain_1341	2
scaffold_2	starts_in_intron	13896898	13896898	-	asmbl_23546	none	blat.proc3829887.chain_2286	1	STRG.2382.1,STRG.2382.2,blat.proc3829887.chain_2289,blat.proc3829887.chain_2290	4
scaffold_16	retained_intron	14662578	14662669	-	asmbl_16675	none	blat.proc3829897.chain_810	1	STRG.19849.1,STRG.19849.2,blat.proc3829897.chain_809	3
scaffold_25	skipped_exon	8697800	8700443	-	asmbl_34437	none	STRG.27678.5	1	STRG.27678.2,blat.proc3829901.chain_954,blat.proc3829901.chain_957,blat.proc3829901.chain_960	4
scaffold_27	alt_acceptor	941554	941555	-	asmbl_36677	none	STRG.28573.1,Trinity_GG_32961_c0_g1_i2,blat.proc3829901.chain_1704	3	STRG.28573.2,Trinity_GG_32961_c0_g1_i1,blat.proc3829901.chain_1706	3
scaffold_28	spliced_intron	2303296	2303372	-	asmbl_37359	none	STRG.29384.1	1	STRG.29384.2	1
scaffold_20	retained_intron	1469067	1469176	-	asmbl_26506	none	blat.proc3829897.chain_3664	1	STRG.22854.1,STRG.22854.2,STRG.22854.3,blat.proc3829897.chain_3663,blat.proc3829897.chain_3665	5
scaffold_22	ends_in_intron	566924	566924	-	asmbl_29874	none	Trinity_GG_30809_c0_g1_i2,blat.proc3829899.chain_1803	2	STRG.24690.1,blat.proc3829899.chain_1804	2
scaffold_12	starts_in_intron	2416311	2416311	+	asmbl_8454	none	blat.proc3829877.chain_2991	1	STRG.14484.1,blat.proc3829877.chain_2990	2
scaffold_1	starts_in_intron	6958129	6958129	-	asmbl_417	none	blat.proc3829887.chain_346	1	STRG.493.1,blat.proc3829887.chain_345,blat.proc3829887.chain_392	3
scaffold_5	retained_intron	19374068	19374221	-	asmbl_46282	none	STRG.7028.5,blat.proc3829889.chain_3037	2	STRG.7028.1,STRG.7028.4,Trinity_GG_20939_c0_g1_i1,blat.proc3829889.chain_3036	4
scaffold_19	alt_acceptor	6740770	6740771	+	asmbl_22241	none	STRG.22176.2,Trinity_GG_12247_c0_g1_i1	2	STRG.22176.1	1
scaffold_1	skipped_exon	22371480	22372437	+	asmbl_2676,asmbl_2680	none	STRG.1490.2,STRG.1490.4	2	STRG.1490.1,STRG.1490.3,STRG.1490.5	3
scaffold_21	alt_acceptor	7318301	7318302	+	asmbl_28739	none	STRG.24238.1,blat.proc3829883.chain_1310	2	STRG.24238.2	1
scaffold_19	spliced_intron	11483212	11483436	-	asmbl_21612,asmbl_21623,asmbl_21624	none	blat.proc3829897.chain_3187,blat.proc3829897.chain_3188,blat.proc3829897.chain_3192	3	STRG.22477.1,blat.proc3829897.chain_3181	2
scaffold_21	skipped_exon	256225	257073	-	asmbl_27316	none	STRG.23718.8,blat.proc3829899.chain_781	2	STRG.23718.1,STRG.23718.2,STRG.23718.3,STRG.23718.4,STRG.23718.5,STRG.23718.6,STRG.23718.7,Trinity_GG_30232_c0_g1_i4,blat.proc3829899.chain_782,blat.proc3829899.chain_783,blat.proc3829899.chain_785,blat.proc3829899.chain_786,blat.proc3829899.chain_787,blat.proc3829899.chain_788,blat.proc3829899.chain_790	15
scaffold_1	ends_in_intron	4918057	4918057	-	asmbl_228	none	STRG.298.2,blat.proc3829887.chain_170	2	STRG.298.1	1
scaffold_11	retained_intron	13252911	13254374	-	asmbl_7105	none	STRG.14183.1,blat.proc3829893.chain_2646	2	STRG.14183.2,blat.proc3829893.chain_2645	2
scaffold_6	starts_in_intron	13184742	13184742	-	asmbl_48836	none	blat.proc3829891.chain_391	1	STRG.8071.1,blat.proc3829891.chain_389,blat.proc3829891.chain_390,blat.proc3829891.chain_392	4
scaffold_1	retained_intron	19006302	19006412	+	asmbl_2562	none	STRG.1322.4	1	STRG.1322.2,STRG.1322.3	2
scaffold_24	spliced_intron	3701651	3701884	+	asmbl_32171,asmbl_32173	none	STRG.26537.1,blat.proc3829883.chain_3449,blat.proc3829883.chain_3450,blat.proc3829883.chain_3451	4	Trinity_GG_14680_c1_g1_i1,blat.proc3829883.chain_3452	2
scaffold_11	ends_in_intron	6255655	6255655	+	asmbl_5584	none	blat.proc3829877.chain_2179	1	STRG.13670.1,STRG.13670.2,blat.proc3829877.chain_2180,blat.proc3829877.chain_2181	4
scaffold_6	retained_intron	13268432	13268569	+	asmbl_47454	none	blat.proc3829875.chain_494	1	STRG.8085.1,STRG.8085.2,blat.proc3829875.chain_493	3
scaffold_6	spliced_intron	5021998	5022641	-	asmbl_48328	none	STRG.7469.2	1	STRG.7469.1,Trinity_GG_21206_c0_g1_i2,Trinity_GG_21206_c0_g1_i5,blat.proc3829889.chain_3472,blat.proc3829889.chain_3473	5
scaffold_11	alternate_exon	210083	210274	-	asmbl_6356	none	STRG.13239.2	1	STRG.13239.1	1
scaffold_7	alt_acceptor	3432229	3432230	+	asmbl_50568	none	STRG.8740.1,blat.proc3829875.chain_1168	2	STRG.8740.2	1
scaffold_18	retained_intron	7631535	7631646	-	asmbl_19996,asmbl_19999	none	STRG.21453.1,STRG.21453.5,blat.proc3829897.chain_2308,blat.proc3829897.chain_2309	4	STRG.21453.3	1
scaffold_24	ends_in_intron	2457198	2457198	+	asmbl_32108	none	Trinity_GG_14572_c0_g1_i2,blat.proc3829883.chain_3281	2	STRG.26453.1,blat.proc3829883.chain_3280	2
scaffold_21	retained_intron	6129614	6129688	+	asmbl_28636	none	STRG.24136.2,blat.proc3829883.chain_1272	2	STRG.24136.1,Trinity_GG_13369_c0_g1_i2,blat.proc3829883.chain_1271,blat.proc3829883.chain_1273	4
scaffold_15	alternate_exon	12619511	12619636	+	asmbl_14530	none	STRG.18707.1,Trinity_GG_10271_c0_g1_i1,blat.proc3829879.chain_3314	3	STRG.18707.2,Trinity_GG_10271_c1_g1_i1,Trinity_GG_10271_c1_g1_i5,blat.proc3829879.chain_3316,blat.proc3829879.chain_3317	5
scaffold_20	spliced_intron	1490365	1490400	+	asmbl_25571	none	STRG.22855.2	1	Trinity_GG_12610_c1_g1_i3,Trinity_GG_12610_c1_g1_i4,blat.proc3829883.chain_15,blat.proc3829883.chain_16,blat.proc3829883.chain_17	5
scaffold_2	alternate_exon	7215130	7215153	+	asmbl_24582	none	blat.proc3829871.chain_2150	1	STRG.2054.4,Trinity_GG_1174_c0_g1_i3,blat.proc3829871.chain_2146	3
scaffold_28	alt_donor	3732175	3732176	-	asmbl_37493	none	blat.proc3829901.chain_2660	1	STRG.29558.1,STRG.29558.2,blat.proc3829901.chain_2659,blat.proc3829901.chain_2661,blat.proc3829901.chain_2662,blat.proc3829901.chain_2663	6
scaffold_1	ends_in_intron	8752756	8752756	-	asmbl_499	none	Trinity_GG_17342_c0_g1_i4,blat.proc3829887.chain_510	2	STRG.583.3,blat.proc3829887.chain_506	2
scaffold_2	starts_in_intron	1762585	1762585	-	asmbl_22893	none	blat.proc3829887.chain_1447	1	STRG.1649.1,blat.proc3829887.chain_1446	2
scaffold_28	starts_in_intron	2945179	2945179	-	asmbl_37439	none	blat.proc3829901.chain_2597	1	STRG.29475.1,blat.proc3829901.chain_2598	2
scaffold_13	alt_acceptor	16140660	16140661	+	asmbl_11534,asmbl_11535	none	STRG.16641.1,Trinity_GG_9161_c0_g1_i1,Trinity_GG_9161_c0_g1_i2,blat.proc3829879.chain_1368,blat.proc3829879.chain_1369	5	STRG.16641.2	1
scaffold_3	starts_in_intron	19844193	19844193	-	asmbl_39612	none	STRG.4096.3	1	STRG.4096.2,blat.proc3829889.chain_169	2
scaffold_16	skipped_exon	325094	325389	-	asmbl_16030	none	STRG.19019.3	1	STRG.19019.1,STRG.19019.2,blat.proc3829897.chain_59,blat.proc3829897.chain_60,blat.proc3829897.chain_62	5
scaffold_23	alt_acceptor	2415141	2415142	+	asmbl_30705	none	STRG.25693.2	1	STRG.25693.1,STRG.25693.3,Trinity_GG_14189_c0_g1_i1,blat.proc3829883.chain_2608	4
scaffold_2	alt_donor	8055584	8055585	-	asmbl_23324	none	STRG.2095.1,blat.proc3829887.chain_2008	2	STRG.2095.2,STRG.2095.4,blat.proc3829887.chain_2005,blat.proc3829887.chain_2006,blat.proc3829887.chain_2009	5
scaffold_8	starts_in_intron	9001219	9001219	+	asmbl_52032	none	blat.proc3829875.chain_2617	1	STRG.10147.1,STRG.10147.2,Trinity_GG_5624_c0_g1_i1,Trinity_GG_5624_c0_g1_i3,blat.proc3829875.chain_2616,blat.proc3829875.chain_2618	6
scaffold_12	alt_donor	12339619	12339620	+	asmbl_8957	none	STRG.15124.2	1	STRG.15124.1	1
scaffold_1	retained_exon	18485992	18486046	-	asmbl_1110	none	blat.proc3829887.chain_1211	1	STRG.1300.2,blat.proc3829887.chain_1210	2
scaffold_14	ends_in_intron	8612216	8612216	-	asmbl_13311	none	Trinity_GG_26710_c0_g1_i4,blat.proc3829895.chain_1990	2	STRG.17280.1,STRG.17280.2,blat.proc3829895.chain_1989,blat.proc3829895.chain_1992	4
scaffold_2	ends_in_intron	4581298	4581298	+	asmbl_24377,asmbl_24379,asmbl_24383	none	Trinity_GG_1044_c0_g1_i2,blat.proc3829871.chain_1909,blat.proc3829871.chain_1910	3	STRG.1884.1,STRG.1884.2,STRG.1884.3	3
scaffold_3	spliced_intron	17094055	17094262	-	asmbl_39485	none	STRG.3947.1,blat.proc3829889.chain_20	2	Trinity_GG_19201_c0_g1_i4,blat.proc3829889.chain_21	2
scaffold_11	starts_in_intron	2139524	2139524	-	asmbl_6458	none	blat.proc3829893.chain_1840	1	STRG.13367.1,blat.proc3829893.chain_1839	2
scaffold_8	starts_in_intron	8559403	8559403	-	asmbl_52951	none	blat.proc3829891.chain_2301	1	STRG.10106.1,blat.proc3829891.chain_2300,blat.proc3829891.chain_2302,blat.proc3829891.chain_2303	4
scaffold_6	alt_acceptor	2864311	2864312	+	asmbl_46722,asmbl_46723	none	STRG.7272.1,STRG.7272.3,Trinity_GG_4000_c1_g1_i1,blat.proc3829873.chain_3408	4	STRG.7272.2	1
scaffold_25	alt_acceptor	1553784	1553785	-	asmbl_34027	none	STRG.27163.2	1	STRG.27163.1	1
scaffold_13	alt_donor	911810	911811	-	asmbl_9341,asmbl_9344,asmbl_9346	none	STRG.15448.3,STRG.15448.4,blat.proc3829895.chain_213,blat.proc3829895.chain_214	4	STRG.15448.1,STRG.15448.5,STRG.15448.6,blat.proc3829895.chain_212,blat.proc3829895.chain_215	5
scaffold_28	alt_acceptor	6515709	6515710	-	asmbl_37672	none	STRG.29726.3	1	STRG.29726.1	1
scaffold_13	alt_donor	12243837	12243838	-	asmbl_10089	none	STRG.16344.2,blat.proc3829895.chain_1095	2	STRG.16344.1,STRG.16344.3,blat.proc3829895.chain_1094,blat.proc3829895.chain_1097	4
scaffold_2	spliced_intron	16286701	16286808	+	asmbl_25137,asmbl_25138,asmbl_25140	none	STRG.2560.1,STRG.2560.2,blat.proc3829871.chain_2749	3	blat.proc3829871.chain_2752	1
scaffold_13	skipped_exon	366181	366931	-	asmbl_9287	none	STRG.15426.3	1	STRG.15426.1,STRG.15426.5,Trinity_GG_25666_c0_g1_i11,blat.proc3829895.chain_155	4
scaffold_12	alt_acceptor	6407124	6407125	+	asmbl_8637	none	STRG.14727.1,blat.proc3829877.chain_3212	2	STRG.14727.2	1
scaffold_21	ends_in_intron	8529061	8529061	+	asmbl_28831	none	blat.proc3829883.chain_1388	1	STRG.24375.1,blat.proc3829883.chain_1389,blat.proc3829883.chain_1391,blat.proc3829883.chain_1392	4
scaffold_3	retained_exon	13664588	13664678	-	asmbl_39231	none	STRG.3706.1	1	STRG.3706.2	1
scaffold_1	ends_in_intron	19006653	19006653	+	asmbl_2559	none	STRG.1322.1	1	STRG.1322.2,STRG.1322.4	2
scaffold_3	alt_donor	13899101	13899102	+	asmbl_40428	none	STRG.3737.2	1	STRG.3737.1,blat.proc3829873.chain_144,blat.proc3829873.chain_145	3
scaffold_11	alt_donor	4688729	4688730	-	asmbl_6585,asmbl_6586	none	STRG.13547.1,STRG.13547.2,blat.proc3829893.chain_2029,blat.proc3829893.chain_2031	4	STRG.13547.3,STRG.13547.5	2
scaffold_17	spliced_intron	9007049	9007385	+	asmbl_18181	none	STRG.20513.1,blat.proc3829881.chain_1321	2	blat.proc3829881.chain_1318	1
scaffold_5	alt_donor	5046593	5046594	+	asmbl_43991	none	STRG.5951.1,blat.proc3829873.chain_2107	2	blat.proc3829873.chain_2108	1
scaffold_14	alt_acceptor	3142266	3142267	+	asmbl_11877	none	Trinity_GG_9291_c0_g1_i2,blat.proc3829879.chain_1611	2	STRG.16890.1,Trinity_GG_9291_c0_g1_i3,blat.proc3829879.chain_1610	3
scaffold_28	retained_intron	58885	58965	-	asmbl_37209	none	Trinity_GG_33360_c0_g1_i3,blat.proc3829901.chain_2316	2	STRG.29222.1,Trinity_GG_33360_c0_g1_i2,blat.proc3829901.chain_2317,blat.proc3829901.chain_2318,blat.proc3829901.chain_2319	5
scaffold_14	alternate_exon	14149323	14150151	+	asmbl_12509,asmbl_12510,asmbl_12514	none	STRG.17676.2,Trinity_GG_9669_c0_g1_i3,blat.proc3829879.chain_2282,blat.proc3829879.chain_2283,blat.proc3829879.chain_2284	5	STRG.17676.4	1
scaffold_272	ends_in_intron	5349	5349	-	asmbl_37188	none	blat.proc3829901.chain_3303	1	STRG.30232.1,blat.proc3829901.chain_3304	2
scaffold_15	alternate_exon	8982907	8984399	+	asmbl_14318	none	blat.proc3829879.chain_3025	1	blat.proc3829879.chain_3028	1
scaffold_20	retained_intron	5180977	5181010	+	asmbl_25760	none	STRG.23141.2	1	STRG.23141.1	1
scaffold_12	starts_in_intron	1971770	1971770	-	asmbl_7444	none	blat.proc3829893.chain_2859	1	STRG.14475.1,STRG.14475.2,blat.proc3829893.chain_2858	3
scaffold_4	alt_acceptor	5651946	5651947	-	asmbl_41352,asmbl_41354,asmbl_41357,asmbl_41359,asmbl_41362,asmbl_41363,asmbl_41365,asmbl_41366,asmbl_41368,asmbl_41369	none	STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_605,blat.proc3829889.chain_606,blat.proc3829889.chain_608,blat.proc3829889.chain_611,blat.proc3829889.chain_612,blat.proc3829889.chain_613	10	blat.proc3829889.chain_609	1
scaffold_9	alt_acceptor	2487129	2487130	+	asmbl_53819	none	STRG.10882.1,blat.proc3829875.chain_3343	2	STRG.10882.2	1
scaffold_20	spliced_intron	10787428	10787609	+	asmbl_26148,asmbl_26149	none	STRG.23592.3,blat.proc3829883.chain_742	2	STRG.23592.1,STRG.23592.2,Trinity_GG_13065_c0_g1_i2,blat.proc3829883.chain_740,blat.proc3829883.chain_743	5
scaffold_12	alt_donor	14882852	14882853	+	asmbl_9059	none	STRG.15257.1,blat.proc3829877.chain_3644	2	STRG.15257.2,blat.proc3829877.chain_3645	2
scaffold_13	alt_acceptor	5819281	5819282	+	asmbl_10881	none	STRG.15880.3	1	STRG.15880.1,STRG.15880.4	2
scaffold_8	skipped_exon	11110746	11111142	+	asmbl_52184	none	STRG.10317.1,blat.proc3829875.chain_2832	2	STRG.10317.3,blat.proc3829875.chain_2831	2
scaffold_23	alternate_exon	2414458	2415278	+	asmbl_30705	none	STRG.25693.2	1	STRG.25693.4	1
scaffold_10	starts_in_intron	7092938	7092938	-	asmbl_3444	none	STRG.12520.1,blat.proc3829893.chain_1012	2	STRG.12520.2,blat.proc3829893.chain_1013	2
scaffold_13	spliced_intron	15672407	15672426	+	asmbl_11507	none	STRG.16598.2	1	STRG.16598.1	1
scaffold_3	alternate_exon	11298204	11298515	+	asmbl_40293	none	STRG.3552.1,blat.proc3829871.chain_3749	2	STRG.3552.2,blat.proc3829871.chain_3750	2
scaffold_28	alternate_exon	1565542	1566078	+	asmbl_38003	none	STRG.29320.2	1	STRG.29320.1,Trinity_GG_16256_c0_g1_i1	2
scaffold_25	alternate_exon	7340858	7343436	+	asmbl_33668	none	STRG.27572.2	1	STRG.27572.3	1
scaffold_5	spliced_intron	15285942	15286100	-	asmbl_46040	none	STRG.6706.2,blat.proc3829889.chain_2769	2	STRG.6706.1,Trinity_GG_20782_c0_g1_i5,blat.proc3829889.chain_2770	3
scaffold_23	ends_in_intron	10975547	10975547	+	asmbl_31198	none	blat.proc3829883.chain_3196	1	STRG.26281.1,STRG.26281.2,STRG.26281.3,Trinity_GG_14524_c0_g1_i13,Trinity_GG_14524_c0_g1_i8,blat.proc3829883.chain_3193,blat.proc3829883.chain_3194,blat.proc3829883.chain_3195,blat.proc3829883.chain_3198,blat.proc3829883.chain_3199,blat.proc3829883.chain_3200,blat.proc3829883.chain_3203	12
scaffold_4	starts_in_intron	7993603	7993603	+	asmbl_42858	none	Trinity_GG_2519_c0_g1_i3,blat.proc3829873.chain_912	2	STRG.4620.2,STRG.4620.3,blat.proc3829873.chain_913,blat.proc3829873.chain_914	4
scaffold_7	alt_donor	130197	130198	-	asmbl_49479	none	STRG.8585.1	1	STRG.8585.4,STRG.8585.8,blat.proc3829891.chain_992,blat.proc3829891.chain_998	4
scaffold_8	skipped_exon	5761429	5763686	+	asmbl_51893	none	Trinity_GG_5561_c0_g1_i1,blat.proc3829875.chain_2489	2	STRG.9986.1	1
scaffold_23	ends_in_intron	2036309	2036309	+	asmbl_30677	none	STRG.25660.2,blat.proc3829883.chain_2561	2	STRG.25660.1	1
scaffold_13	ends_in_intron	11633871	11633871	-	asmbl_10065	none	Trinity_GG_26147_c0_g1_i1,blat.proc3829895.chain_1050	2	STRG.16297.1,blat.proc3829895.chain_1049	2
scaffold_6	skipped_exon	18922318	18922987	-	asmbl_49227	none	STRG.8554.2	1	STRG.8554.1,blat.proc3829891.chain_893	2
scaffold_17	spliced_intron	13196891	13197082	-	asmbl_19407,asmbl_19408	none	STRG.20803.1,STRG.20803.4,blat.proc3829897.chain_1733,blat.proc3829897.chain_1737	4	blat.proc3829897.chain_1736	1
scaffold_26	alt_acceptor	6350865	6350866	-	asmbl_34954,asmbl_34957	none	STRG.28315.4,STRG.28315.5,blat.proc3829901.chain_1406	3	STRG.28315.2,STRG.28315.3,blat.proc3829901.chain_1403,blat.proc3829901.chain_1404	4
scaffold_1	alt_acceptor	5685354	5685355	+	asmbl_1742	none	STRG.365.2	1	STRG.365.1,blat.proc3829871.chain_420,blat.proc3829871.chain_421	3
scaffold_1	alt_donor	21931332	21931333	-	asmbl_1226	none	STRG.1472.2	1	STRG.1472.1	1
scaffold_2	retained_intron	892404	892512	+	asmbl_24155,asmbl_24156,asmbl_24163	none	STRG.1565.1,STRG.1565.4,blat.proc3829871.chain_1631,blat.proc3829871.chain_1634,blat.proc3829871.chain_1635	5	STRG.1565.2,STRG.1565.3,blat.proc3829871.chain_1632,blat.proc3829871.chain_1636	4
scaffold_11	alt_donor	5007516	5007517	+	asmbl_5498	none	STRG.13579.2,blat.proc3829877.chain_2001	2	STRG.13579.1	1
scaffold_20	retained_exon	426154	426290	+	asmbl_25505	none	STRG.22729.2	1	STRG.22729.1	1
scaffold_27	alt_donor	2694883	2694884	-	asmbl_36796	none	STRG.28731.1,blat.proc3829901.chain_1929,blat.proc3829901.chain_1930	3	STRG.28731.2	1
scaffold_18	alt_acceptor	2539009	2539010	+	asmbl_20439	none	STRG.21114.2,blat.proc3829881.chain_1980	2	STRG.21114.1,blat.proc3829881.chain_1978	2
scaffold_1	alt_acceptor	9171402	9171403	-	asmbl_526	none	STRG.611.2	1	STRG.611.1,Trinity_GG_17347_c0_g1_i1,blat.proc3829887.chain_522	3
scaffold_9	retained_exon	5277420	5277434	+	asmbl_53994	none	STRG.11095.1	1	STRG.11095.3	1
scaffold_1	alternate_exon	20755351	20755380	+	asmbl_2642	none	blat.proc3829871.chain_1474	1	STRG.1421.1,blat.proc3829871.chain_1473,blat.proc3829871.chain_1476	3
scaffold_26	alt_donor	9847061	9847062	+	asmbl_35801,asmbl_35805,asmbl_35806,asmbl_35807,asmbl_35808,asmbl_35809,asmbl_35811,asmbl_35812,asmbl_35813,asmbl_35816,asmbl_35817	none	STRG.28526.2,STRG.28526.5,blat.proc3829885.chain_1556,blat.proc3829885.chain_1557,blat.proc3829885.chain_1558,blat.proc3829885.chain_1559,blat.proc3829885.chain_1560,blat.proc3829885.chain_1562,blat.proc3829885.chain_1563,blat.proc3829885.chain_1564,blat.proc3829885.chain_1565,blat.proc3829885.chain_1566	12	STRG.28526.1,STRG.28526.3,blat.proc3829885.chain_1561,blat.proc3829885.chain_1567	4
scaffold_12	alt_acceptor	16401680	16401681	+	asmbl_9135	none	STRG.15385.3	1	STRG.15385.2,Trinity_GG_8419_c0_g1_i5,blat.proc3829877.chain_3733	3
scaffold_23	alt_donor	1673608	1673609	-	asmbl_31386	none	STRG.25622.1,blat.proc3829899.chain_2731	2	STRG.25622.2	1
scaffold_21	starts_in_intron	8000202	8000202	-	asmbl_27904	none	blat.proc3829899.chain_1429	1	STRG.24325.1,STRG.24325.2,STRG.24325.3,STRG.24325.4,blat.proc3829899.chain_1424,blat.proc3829899.chain_1426,blat.proc3829899.chain_1427,blat.proc3829899.chain_1428	8
scaffold_3	alt_acceptor	7220598	7220599	-	asmbl_38910	none	STRG.3321.2,blat.proc3829887.chain_3091	2	STRG.3321.1,blat.proc3829887.chain_3092	2
scaffold_24	retained_intron	9952112	9952301	-	asmbl_33147,asmbl_33149,asmbl_33151,asmbl_33153	none	STRG.26947.3,STRG.26947.8,Trinity_GG_32087_c0_g1_i6,blat.proc3829901.chain_248	4	STRG.26947.1,STRG.26947.4,Trinity_GG_32087_c0_g1_i5,blat.proc3829901.chain_249,blat.proc3829901.chain_250	5
scaffold_4	ends_in_intron	18759502	18759502	+	asmbl_43449	none	STRG.5460.1	1	STRG.5460.2,Trinity_GG_3000_c0_g1_i2,blat.proc3829873.chain_1687	3
scaffold_20	alternate_exon	6181791	6181823	+	asmbl_25808	none	blat.proc3829883.chain_285	1	STRG.23208.1,blat.proc3829883.chain_284	2
scaffold_2	spliced_intron	8062385	8062907	+	asmbl_24644	none	STRG.2103.1,blat.proc3829871.chain_2094	2	Trinity_GG_1147_c1_g1_i1,blat.proc3829871.chain_2096	2
scaffold_4	starts_in_intron	665779	665779	-	asmbl_41083,asmbl_41084	none	STRG.4146.2,STRG.4146.3	2	STRG.4146.1,STRG.4146.4	2
scaffold_15	spliced_intron	181512	182202	+	asmbl_13893	none	STRG.17862.2,blat.proc3829879.chain_2564	2	STRG.17862.1,Trinity_GG_9834_c2_g1_i1,blat.proc3829879.chain_2563	3
scaffold_15	starts_in_intron	3397116	3397116	-	asmbl_15104	none	blat.proc3829895.chain_2868	1	STRG.18107.1,blat.proc3829895.chain_2867,blat.proc3829895.chain_2869	3
scaffold_4	alt_acceptor	4095984	4095985	+	asmbl_42544	none	STRG.4313.1,blat.proc3829873.chain_635	2	STRG.4313.3,STRG.4313.4,blat.proc3829873.chain_631,blat.proc3829873.chain_636	4
scaffold_9	skipped_exon	6148887	6150219	+	asmbl_54064	none	STRG.11144.1	1	STRG.11144.2	1
scaffold_2	skipped_exon	4238823	4241414	-	asmbl_23082	none	STRG.1859.3	1	STRG.1859.1,STRG.1859.2,blat.proc3829887.chain_1733,blat.proc3829887.chain_1734	4
scaffold_16	alt_donor	9338088	9338089	-	asmbl_16453	none	STRG.19524.1,Trinity_GG_27964_c1_g1_i2,blat.proc3829897.chain_532	3	STRG.19524.2,Trinity_GG_27964_c1_g1_i1,blat.proc3829897.chain_533	3
scaffold_18	spliced_intron	8726455	8726561	+	asmbl_20883,asmbl_20884,asmbl_20885,asmbl_20888	none	STRG.21533.1,STRG.21533.2,STRG.21533.3,blat.proc3829881.chain_2483,blat.proc3829881.chain_2484,blat.proc3829881.chain_2485,blat.proc3829881.chain_2488	7	STRG.21533.5,STRG.21533.6,Trinity_GG_11882_c0_g1_i2,blat.proc3829881.chain_2482,blat.proc3829881.chain_2486,blat.proc3829881.chain_2487	6
scaffold_24	alt_donor	2513672	2513673	+	asmbl_32114	none	STRG.26452.1	1	STRG.26452.2,STRG.26452.3,STRG.26452.4,blat.proc3829883.chain_3353,blat.proc3829883.chain_3354,blat.proc3829883.chain_3355	6
scaffold_12	alternate_exon	9757853	9757898	+	asmbl_8839	none	STRG.14933.2	1	STRG.14933.1,blat.proc3829877.chain_3459	2
scaffold_11	skipped_exon	12904181	12904897	-	asmbl_7081,asmbl_7085	none	STRG.14165.1,blat.proc3829893.chain_2638	2	STRG.14165.2	1
scaffold_15	spliced_intron	15409993	15410226	+	asmbl_14717,asmbl_14726	none	STRG.18921.2,STRG.18921.4,blat.proc3829879.chain_3515	3	blat.proc3829879.chain_3516	1
scaffold_24	starts_in_intron	8865389	8865389	+	asmbl_32457	none	Trinity_GG_14814_c0_g1_i2,blat.proc3829883.chain_3689	2	STRG.26887.1,blat.proc3829883.chain_3690	2
scaffold_6	starts_in_intron	11556860	11556860	-	asmbl_48699	none	blat.proc3829891.chain_204	1	STRG.7947.1,STRG.7947.2,STRG.7947.3,blat.proc3829891.chain_206,blat.proc3829891.chain_207	5
scaffold_3	starts_in_intron	14699792	14699792	-	asmbl_39359	none	blat.proc3829887.chain_3644	1	STRG.3815.1,blat.proc3829887.chain_3643	2
scaffold_16	alt_donor	4692298	4692299	-	asmbl_16243	none	STRG.19240.2	1	STRG.19240.1,blat.proc3829897.chain_278	2
scaffold_2	retained_intron	4836305	4836534	-	asmbl_23130	none	STRG.1904.2	1	STRG.1904.1	1
scaffold_11	alt_donor	5502118	5502119	-	asmbl_6640	none	STRG.13608.1,blat.proc3829893.chain_2060	2	blat.proc3829893.chain_2061	1
scaffold_2	spliced_intron	14021578	14021829	+	asmbl_24901,asmbl_24905	none	STRG.2396.2,STRG.2396.3	2	blat.proc3829871.chain_2491	1
scaffold_9	alternate_exon	11852019	11852142	-	asmbl_55301	none	STRG.11492.1,blat.proc3829891.chain_3611	2	STRG.11492.2,blat.proc3829891.chain_3609	2
scaffold_20	alt_acceptor	631243	631244	-	asmbl_26437	none	STRG.22751.3,blat.proc3829897.chain_3523	2	STRG.22751.1,blat.proc3829897.chain_3522	2
scaffold_17	alternate_exon	6800181	6800293	+	asmbl_18003	none	STRG.20322.3	1	STRG.20322.1,STRG.20322.2,blat.proc3829881.chain_1106,blat.proc3829881.chain_1107,blat.proc3829881.chain_1108	5
scaffold_25	spliced_intron	4549453	4549681	-	asmbl_34192	none	STRG.27375.1,blat.proc3829901.chain_689	2	STRG.27375.2	1
scaffold_27	skipped_exon	144985	146719	-	asmbl_36598	none	STRG.28528.2	1	Trinity_GG_32960_c0_g1_i2,blat.proc3829901.chain_1702	2
scaffold_23	alt_donor	4450583	4450584	-	asmbl_31587,asmbl_31591	none	STRG.25842.1,STRG.25842.2,Trinity_GG_31473_c0_g1_i4,blat.proc3829899.chain_2971	4	STRG.25842.3,Trinity_GG_31473_c0_g1_i1,blat.proc3829899.chain_2970	3
scaffold_6	spliced_intron	19075642	19076743	+	asmbl_47813,asmbl_47814	none	STRG.8572.1,STRG.8572.2,Trinity_GG_4663_c0_g1_i3,Trinity_GG_4663_c0_g1_i5,blat.proc3829875.chain_866,blat.proc3829875.chain_867	6	STRG.8572.3,STRG.8572.4,Trinity_GG_4663_c0_g1_i2,Trinity_GG_4663_c0_g1_i6,blat.proc3829875.chain_865,blat.proc3829875.chain_868	6
scaffold_3	ends_in_intron	7738044	7738044	+	asmbl_40139	none	blat.proc3829871.chain_3502	1	STRG.3362.1,STRG.3362.2,blat.proc3829871.chain_3503	3
scaffold_19	starts_in_intron	3669379	3669379	-	asmbl_21325	none	blat.proc3829897.chain_2740	1	STRG.22034.1,STRG.22034.2,STRG.22034.3,STRG.22034.4,Trinity_GG_29269_c0_g1_i1,Trinity_GG_29269_c0_g1_i2,Trinity_GG_29269_c0_g1_i5,Trinity_GG_29269_c0_g1_i6,blat.proc3829897.chain_2739,blat.proc3829897.chain_2742,blat.proc3829897.chain_2743,blat.proc3829897.chain_2744,blat.proc3829897.chain_2745	13
scaffold_6	spliced_intron	2908831	2908974	+	asmbl_46733,asmbl_46735	none	blat.proc3829873.chain_3369,blat.proc3829873.chain_3373	2	STRG.7289.2	1
scaffold_24	alt_acceptor	1338840	1338841	+	asmbl_32082	none	STRG.26372.1	1	STRG.26372.2	1
scaffold_11	retained_intron	175992	176605	+	asmbl_5225,asmbl_5226,asmbl_5227	none	STRG.13233.2,blat.proc3829877.chain_1767,blat.proc3829877.chain_1768	3	STRG.13233.1,blat.proc3829877.chain_1766,blat.proc3829877.chain_1769	3
scaffold_18	alt_donor	2820919	2820920	+	asmbl_20448,asmbl_20449	none	STRG.21133.1,STRG.21133.2,blat.proc3829881.chain_1915,blat.proc3829881.chain_1916	4	blat.proc3829881.chain_1920	1
scaffold_3	ends_in_intron	18119300	18119300	+	asmbl_40685	none	Trinity_GG_2250_c0_g1_i1,blat.proc3829873.chain_410	2	STRG.4022.1,STRG.4022.2	2
scaffold_17	alt_donor	5997610	5997611	+	asmbl_17963,asmbl_17966	none	STRG.20273.4,STRG.20273.5	2	STRG.20273.1,STRG.20273.2,blat.proc3829881.chain_1091	3
scaffold_1	alt_donor	4577552	4577553	-	asmbl_204,asmbl_207,asmbl_210,asmbl_211,asmbl_215	none	STRG.277.1,blat.proc3829887.chain_133,blat.proc3829887.chain_135,blat.proc3829887.chain_137,blat.proc3829887.chain_140	5	STRG.277.6	1
scaffold_17	ends_in_intron	3967431	3967431	-	asmbl_18877	none	Trinity_GG_28308_c0_g1_i2,blat.proc3829897.chain_1068	2	STRG.20142.1,blat.proc3829897.chain_1069	2
scaffold_15	alt_donor	10632747	10632748	+	asmbl_14403	none	STRG.18539.1,blat.proc3829879.chain_3112	2	STRG.18539.2,STRG.18539.3,blat.proc3829879.chain_3113	3
scaffold_7	retained_intron	4875256	4875356	+	asmbl_50634	none	blat.proc3829875.chain_1234	1	STRG.8823.1,Trinity_GG_4853_c0_g1_i3,blat.proc3829875.chain_1233,blat.proc3829875.chain_1235	4
scaffold_8	starts_in_intron	6114443	6114443	+	asmbl_51929	none	Trinity_GG_5582_c0_g3_i1,blat.proc3829875.chain_2529	2	STRG.10007.1,STRG.10007.2,Trinity_GG_5582_c0_g1_i2,Trinity_GG_5582_c0_g1_i5,Trinity_GG_5582_c0_g1_i7,blat.proc3829875.chain_2522,blat.proc3829875.chain_2523,blat.proc3829875.chain_2527	8
scaffold_12	alt_acceptor	16728958	16728959	-	asmbl_8281	none	STRG.15400.1,Trinity_GG_25625_c0_g1_i1,blat.proc3829895.chain_94	3	STRG.15400.2,Trinity_GG_25625_c0_g1_i5,blat.proc3829895.chain_93	3
scaffold_6	alt_donor	6999970	6999971	+	asmbl_46976	none	STRG.7607.3	1	STRG.7607.1,STRG.7607.2,blat.proc3829873.chain_3702	3
scaffold_1	ends_in_intron	18028810	18028810	-	asmbl_1075	none	blat.proc3829871.chain_1253	1	STRG.1264.4	1
scaffold_11	alt_donor	12905445	12905446	-	asmbl_7085	none	blat.proc3829893.chain_2638	1	STRG.14165.1,STRG.14165.2	2
scaffold_16	retained_intron	125053	125275	+	asmbl_16786,asmbl_16787	none	STRG.18995.2,Trinity_GG_10419_c0_g1_i2,Trinity_GG_10419_c0_g1_i3,blat.proc3829879.chain_3619,blat.proc3829879.chain_3620	5	STRG.18995.1,Trinity_GG_10419_c0_g1_i4,blat.proc3829879.chain_3618	3
scaffold_6	alt_donor	18834792	18834793	+	asmbl_47801	none	STRG.8547.3	1	STRG.8547.1,STRG.8547.2,blat.proc3829875.chain_887,blat.proc3829875.chain_888,blat.proc3829875.chain_890,blat.proc3829875.chain_891	6
scaffold_14	starts_in_intron	16039686	16039686	+	asmbl_12647	none	blat.proc3829879.chain_2490	1	STRG.17831.1,blat.proc3829879.chain_2488,blat.proc3829879.chain_2489	3
scaffold_5	spliced_intron	12909527	12909673	+	asmbl_44507	none	STRG.6514.1,blat.proc3829873.chain_2624	2	Trinity_GG_3534_c0_g1_i3,blat.proc3829873.chain_2625,blat.proc3829873.chain_2626	3
scaffold_24	ends_in_intron	7732671	7732671	-	asmbl_33045	none	Trinity_GG_32007_c0_g1_i4	1	STRG.26803.1,STRG.26803.2	2
scaffold_5	retained_intron	10136208	10136286	+	asmbl_44326	none	Trinity_GG_3386_c0_g1_i2,blat.proc3829873.chain_2355	2	STRG.6303.1,blat.proc3829873.chain_2354,blat.proc3829873.chain_2357	3
scaffold_13	spliced_intron	4239686	4240251	-	asmbl_9573,asmbl_9576,asmbl_9577	none	STRG.15737.2,STRG.15737.3,STRG.15737.4,blat.proc3829895.chain_479	4	STRG.15737.1,blat.proc3829895.chain_477,blat.proc3829895.chain_480	3
scaffold_6	retained_exon	9909810	9910437	+	asmbl_47185	none	STRG.7827.1	1	STRG.7827.4	1
scaffold_7	retained_intron	12387637	12387722	-	asmbl_50017,asmbl_50021	none	blat.proc3829891.chain_1534,blat.proc3829891.chain_1537	2	STRG.9328.1,blat.proc3829891.chain_1531,blat.proc3829891.chain_1532,blat.proc3829891.chain_1533,blat.proc3829891.chain_1535,blat.proc3829891.chain_1536,blat.proc3829891.chain_1538	7
scaffold_2	retained_intron	14361444	14361522	+	asmbl_24950	none	STRG.2435.2,blat.proc3829871.chain_2606	2	STRG.2435.1,blat.proc3829871.chain_2604,blat.proc3829871.chain_2605	3
scaffold_14	alt_donor	2840764	2840765	+	asmbl_11859	none	STRG.16867.3	1	STRG.16867.1,STRG.16867.2,Trinity_GG_9281_c0_g1_i1,blat.proc3829879.chain_1585	4
scaffold_5	ends_in_intron	5865298	5865298	-	asmbl_45455	none	blat.proc3829889.chain_2086	1	STRG.5992.2,STRG.5992.3	2
scaffold_25	retained_intron	8709541	8709662	+	asmbl_33748	none	Trinity_GG_15273_c0_g1_i1,blat.proc3829885.chain_696	2	STRG.27679.1,STRG.27679.2,STRG.27679.3,Trinity_GG_15273_c0_g1_i11,Trinity_GG_15273_c0_g1_i7,blat.proc3829885.chain_693,blat.proc3829885.chain_703	7
scaffold_18	alt_acceptor	8382800	8382801	+	asmbl_20853	none	STRG.21501.1,blat.proc3829881.chain_2503	2	STRG.21501.2	1
scaffold_25	alt_acceptor	286073	286074	-	asmbl_33958	none	STRG.27046.2	1	STRG.27046.1,blat.proc3829901.chain_376	2
scaffold_26	skipped_exon	9773422	9774402	+	asmbl_35778,asmbl_35781,asmbl_35787,asmbl_35788,asmbl_35790	none	STRG.28501.1,STRG.28501.3,STRG.28501.5,STRG.28501.9,blat.proc3829885.chain_1535,blat.proc3829885.chain_1538	6	STRG.28501.10	1
scaffold_26	ends_in_intron	4593222	4593222	-	asmbl_34843	none	Trinity_GG_32772_c0_g1_i5,blat.proc3829901.chain_1355	2	STRG.28165.2,STRG.28165.3,blat.proc3829901.chain_1354,blat.proc3829901.chain_1356	4
scaffold_13	alternate_exon	6047140	6048100	-	asmbl_9722	none	STRG.15900.3,Trinity_GG_25933_c1_g1_i1,blat.proc3829895.chain_627,blat.proc3829895.chain_633	4	STRG.15900.2,blat.proc3829895.chain_628,blat.proc3829895.chain_630	3
scaffold_23	starts_in_intron	2028253	2028253	-	asmbl_31403	none	blat.proc3829899.chain_2725	1	STRG.25653.1,blat.proc3829899.chain_2726,blat.proc3829899.chain_2727	3
scaffold_5	spliced_intron	10853360	10853477	+	asmbl_44366,asmbl_44368,asmbl_44370,asmbl_44371,asmbl_44372	none	STRG.6350.1,STRG.6350.3,blat.proc3829873.chain_2512,blat.proc3829873.chain_2513,blat.proc3829873.chain_2515,blat.proc3829873.chain_2516	6	STRG.6350.4,blat.proc3829873.chain_2514	2
scaffold_15	retained_exon	6961608	6961758	+	asmbl_14212	none	STRG.18295.1	1	STRG.18295.2	1
scaffold_12	alt_acceptor	16398697	16398698	+	asmbl_9131,asmbl_9132,asmbl_9134,asmbl_9136	none	STRG.15385.1,STRG.15385.2,STRG.15385.5,STRG.15385.6,Trinity_GG_8419_c0_g1_i2,Trinity_GG_8419_c0_g1_i5,blat.proc3829877.chain_3733,blat.proc3829877.chain_3735	8	STRG.15385.3,STRG.15385.4,Trinity_GG_8419_c0_g1_i6,blat.proc3829877.chain_3736	4
scaffold_5	retained_intron	14126415	14126522	-	asmbl_45970	none	blat.proc3829889.chain_2658	1	STRG.6617.1	1
scaffold_15	alternate_exon	8044411	8044598	-	asmbl_15349	none	STRG.18369.1,blat.proc3829895.chain_3067	2	STRG.18369.2,STRG.18369.3,STRG.18369.4	3
scaffold_10	starts_in_intron	342751	342751	-	asmbl_2859	none	Trinity_GG_23606_c0_g1_i4,blat.proc3829893.chain_297	2	STRG.11910.1,STRG.11910.2,blat.proc3829893.chain_295,blat.proc3829893.chain_298	4
scaffold_11	retained_exon	13035576	13035747	-	asmbl_7095	none	blat.proc3829893.chain_2576	1	STRG.14169.1,blat.proc3829893.chain_2575,blat.proc3829893.chain_2577	3
scaffold_20	alternate_exon	9898479	9898775	+	asmbl_26065	none	STRG.23516.2,Trinity_GG_13004_c0_g1_i1,blat.proc3829883.chain_629	3	STRG.23516.1,Trinity_GG_13004_c0_g1_i2,blat.proc3829883.chain_628	3
scaffold_4	alternate_exon	16133518	16133580	-	asmbl_41892	none	STRG.5182.4,blat.proc3829889.chain_1223	2	STRG.5182.3	1
scaffold_4	ends_in_intron	5647943	5647943	-	asmbl_41353	none	Trinity_GG_19533_c1_g1_i2,blat.proc3829889.chain_615	2	STRG.4469.1,STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_614,blat.proc3829889.chain_617,blat.proc3829889.chain_618,blat.proc3829889.chain_619	8
scaffold_22	alt_acceptor	10321918	10321919	+	asmbl_29643	none	STRG.25367.2	1	STRG.25367.1	1
scaffold_3	spliced_intron	14587006	14587312	-	asmbl_39352	none	STRG.3802.2,blat.proc3829887.chain_3647	2	STRG.3802.1,blat.proc3829887.chain_3646	2
scaffold_13	spliced_intron	517905	518333	+	asmbl_10458,asmbl_10460	none	STRG.15434.4,STRG.15434.5	2	STRG.15434.1,blat.proc3829879.chain_114	2
scaffold_19	skipped_exon	13749402	13752259	+	asmbl_22695	none	STRG.22678.1,blat.proc3829881.chain_3609	2	STRG.22678.2	1
scaffold_16	alt_acceptor	1801005	1801006	-	asmbl_16126	none	STRG.19093.2	1	STRG.19093.1,blat.proc3829897.chain_135	2
scaffold_10	alt_donor	8917449	8917450	+	asmbl_4617	none	STRG.12631.2,blat.proc3829877.chain_1154	2	blat.proc3829877.chain_1157	1
scaffold_16	ends_in_intron	7518178	7518178	+	asmbl_17141,asmbl_17142	none	STRG.19391.1,Trinity_GG_10593_c3_g1_i1,Trinity_GG_10593_c3_g1_i2,blat.proc3829881.chain_225,blat.proc3829881.chain_226	5	STRG.19391.3	1
scaffold_6	alternate_exon	13263892	13272723	+	asmbl_47455	none	STRG.8085.2	1	STRG.8085.3,blat.proc3829875.chain_490,blat.proc3829875.chain_492	3
scaffold_14	alt_acceptor	582565	582566	+	asmbl_11741,asmbl_11742,asmbl_11746	none	STRG.16728.1,STRG.16728.2,Trinity_GG_9217_c0_g1_i3,Trinity_GG_9217_c0_g1_i7,blat.proc3829879.chain_1457,blat.proc3829879.chain_1458	6	STRG.16728.3	1
scaffold_1	alternate_exon	19041067	19043376	+	asmbl_2564	none	STRG.1337.3	1	STRG.1337.4	1
scaffold_2	retained_intron	11199609	11200469	-	asmbl_23460,asmbl_23461	none	Trinity_GG_18294_c0_g1_i2,blat.proc3829887.chain_2175,blat.proc3829887.chain_2176,blat.proc3829887.chain_2178	4	STRG.2251.1,blat.proc3829887.chain_2177	2
scaffold_3	retained_intron	14319899	14319995	-	asmbl_39303,asmbl_39304	none	STRG.3769.2,Trinity_GG_19098_c1_g1_i4,blat.proc3829887.chain_3564	3	STRG.3769.1,Trinity_GG_19098_c1_g1_i2,blat.proc3829887.chain_3565	3
scaffold_8	retained_intron	5554249	5554404	-	asmbl_52828,asmbl_52830	none	blat.proc3829891.chain_2058,blat.proc3829891.chain_2060	2	STRG.9977.1,blat.proc3829891.chain_2061,blat.proc3829891.chain_2062	3
scaffold_14	retained_intron	12755086	12755745	-	asmbl_13581,asmbl_13582,asmbl_13586	none	STRG.17572.2,STRG.17572.3,Trinity_GG_26911_c1_g1_i3,blat.proc3829895.chain_2356,blat.proc3829895.chain_2361	5	STRG.17572.1,Trinity_GG_26911_c1_g1_i9,blat.proc3829895.chain_2359,blat.proc3829895.chain_2360,blat.proc3829895.chain_2363	5
scaffold_16	retained_intron	702407	702563	+	asmbl_16831	none	Trinity_GG_10405_c0_g1_i1,blat.proc3829879.chain_3594	2	STRG.19036.1,blat.proc3829879.chain_3595	2
scaffold_20	alt_donor	967202	967203	+	asmbl_25550	none	STRG.22792.1	1	STRG.22792.3,Trinity_GG_12589_c0_g1_i3	2
scaffold_19	alternate_exon	2195462	2195493	-	asmbl_21255	none	STRG.21922.2	1	STRG.21922.1,blat.proc3829897.chain_2681	2
scaffold_15	skipped_exon	11142283	11144388	-	asmbl_15499,asmbl_15502,asmbl_15504	none	blat.proc3829895.chain_3283,blat.proc3829895.chain_3287,blat.proc3829895.chain_3289	3	blat.proc3829895.chain_3286,blat.proc3829895.chain_3288	2
scaffold_20	ends_in_intron	9621594	9621594	-	asmbl_26975	none	blat.proc3829899.chain_454	1	STRG.23487.1,blat.proc3829899.chain_453,blat.proc3829899.chain_455	3
scaffold_11	retained_intron	11641641	11641750	+	asmbl_5948	none	Trinity_GG_7765_c0_g1_i3,blat.proc3829877.chain_2569	2	STRG.14080.1,blat.proc3829877.chain_2568,blat.proc3829877.chain_2570,blat.proc3829877.chain_2572,blat.proc3829877.chain_2573,blat.proc3829877.chain_2574	6
scaffold_20	alt_acceptor	5907865	5907866	+	asmbl_25798	none	STRG.23182.1	1	STRG.23182.3	1
scaffold_6	ends_in_intron	17161248	17161248	+	asmbl_47670	none	blat.proc3829875.chain_717	1	STRG.8411.1	1
scaffold_13	retained_exon	15733278	15733376	-	asmbl_10220	none	blat.proc3829895.chain_1293	1	STRG.16601.1	1
scaffold_9	spliced_intron	17851504	17851736	+	asmbl_54631	none	Trinity_GG_6607_c0_g1_i6,blat.proc3829877.chain_589	2	STRG.11860.1,STRG.11860.3,Trinity_GG_6607_c0_g1_i9,blat.proc3829877.chain_588	4
scaffold_13	retained_intron	13868019	13868068	+	asmbl_11393	none	STRG.16425.1,blat.proc3829895.chain_1144	2	STRG.16425.2	1
scaffold_2	spliced_intron	16101801	16102006	-	asmbl_23690	none	STRG.2549.1,blat.proc3829887.chain_2395	2	Trinity_GG_18418_c0_g1_i3,blat.proc3829887.chain_2396	2
scaffold_6	alt_donor	13871377	13871378	+	asmbl_47479	none	STRG.8125.2,blat.proc3829875.chain_561,blat.proc3829875.chain_563	3	STRG.8125.1,Trinity_GG_21655_c0_g1_i1,Trinity_GG_4470_c0_g1_i1,Trinity_GG_4470_c0_g1_i5,blat.proc3829875.chain_560,blat.proc3829875.chain_562,blat.proc3829891.chain_484	7
scaffold_17	alt_acceptor	14964957	14964958	-	asmbl_19502	none	blat.proc3829897.chain_1770	1	STRG.20946.1,blat.proc3829897.chain_1771	2
scaffold_8	retained_intron	17498151	17498237	+	asmbl_52478,asmbl_52479	none	blat.proc3829875.chain_3157,blat.proc3829875.chain_3158	2	STRG.10668.1,STRG.10668.3,STRG.10668.5,blat.proc3829875.chain_3152,blat.proc3829875.chain_3153,blat.proc3829875.chain_3156	6
scaffold_1	alternate_exon	18339047	18339227	+	asmbl_2538	none	STRG.1291.1,blat.proc3829871.chain_1250	2	STRG.1291.3,STRG.1291.4,blat.proc3829871.chain_1251	3
scaffold_25	starts_in_intron	4537567	4537567	-	asmbl_34189,asmbl_34190,asmbl_34191	none	STRG.27373.2,Trinity_GG_32322_c0_g1_i2,Trinity_GG_32322_c0_g1_i4,blat.proc3829901.chain_641,blat.proc3829901.chain_642	5	STRG.27373.1,Trinity_GG_32322_c0_g1_i3,blat.proc3829901.chain_640	3
scaffold_20	alt_acceptor	7471397	7471398	-	asmbl_26825,asmbl_26827,asmbl_26828,asmbl_26829,asmbl_26830,asmbl_26831,asmbl_26833	none	STRG.23308.1,blat.proc3829899.chain_389,blat.proc3829899.chain_391,blat.proc3829899.chain_394,blat.proc3829899.chain_395,blat.proc3829899.chain_396,blat.proc3829899.chain_399,blat.proc3829899.chain_401	8	blat.proc3829899.chain_393	1
scaffold_3	retained_exon	7408924	7408953	-	asmbl_38918	none	STRG.3339.1,blat.proc3829887.chain_3096	2	STRG.3339.2,blat.proc3829887.chain_3095	2
scaffold_19	retained_exon	6408819	6408830	-	asmbl_21425	none	blat.proc3829897.chain_2842	1	STRG.22157.1,blat.proc3829897.chain_2843	2
scaffold_26	skipped_exon	9089789	9091568	-	asmbl_35041	none	STRG.28455.3	1	STRG.28455.1,STRG.28455.2,blat.proc3829901.chain_1604,blat.proc3829901.chain_1605	4
scaffold_5	spliced_intron	7711197	7711308	-	asmbl_45573	none	blat.proc3829889.chain_2234	1	STRG.6143.1,STRG.6143.2,blat.proc3829889.chain_2233	3
scaffold_14	alt_acceptor	7436818	7436819	-	asmbl_13185	none	blat.proc3829895.chain_1844	1	blat.proc3829895.chain_1843	1
scaffold_11	spliced_intron	4756244	4756446	+	asmbl_5480	none	STRG.13564.1,blat.proc3829877.chain_2053	2	blat.proc3829877.chain_2054	1
scaffold_10	spliced_intron	1425641	1425931	+	asmbl_4214,asmbl_4218,asmbl_4221	none	STRG.12005.1,STRG.12005.4,STRG.12005.5,Trinity_GG_6688_c0_g1_i6,blat.proc3829877.chain_729,blat.proc3829877.chain_731	6	STRG.12005.2,Trinity_GG_6688_c0_g1_i8,blat.proc3829877.chain_727,blat.proc3829877.chain_732	4
scaffold_14	starts_in_intron	1611972	1611972	+	asmbl_11806	none	STRG.16791.4,Trinity_GG_9256_c0_g2_i1,blat.proc3829879.chain_1540	3	STRG.16791.1,STRG.16791.2,STRG.16791.3,Trinity_GG_9256_c0_g1_i4,Trinity_GG_9256_c0_g1_i5,blat.proc3829879.chain_1535,blat.proc3829879.chain_1537,blat.proc3829879.chain_1539	8
scaffold_21	retained_intron	256742	257073	-	asmbl_27313,asmbl_27317,asmbl_27322,asmbl_27323	none	STRG.23718.1,STRG.23718.7,Trinity_GG_30232_c0_g1_i4,blat.proc3829899.chain_786,blat.proc3829899.chain_790,blat.proc3829899.chain_791,blat.proc3829899.chain_794	7	STRG.23718.2,STRG.23718.3,STRG.23718.4,STRG.23718.5,STRG.23718.6,blat.proc3829899.chain_782,blat.proc3829899.chain_783,blat.proc3829899.chain_785,blat.proc3829899.chain_787,blat.proc3829899.chain_788	10
scaffold_17	retained_intron	10048773	10050204	+	asmbl_18285	none	STRG.20609.3,Trinity_GG_11293_c0_g1_i1,Trinity_GG_11293_c1_g1_i1,blat.proc3829881.chain_1433,blat.proc3829881.chain_1434	5	STRG.20609.1,blat.proc3829881.chain_1431	2
scaffold_24	alternate_exon	3348122	3348243	-	asmbl_32811	none	STRG.26515.3	1	STRG.26515.2,STRG.26515.4,blat.proc3829899.chain_3531	3
scaffold_6	retained_intron	18716897	18717097	+	asmbl_47789,asmbl_47791	none	STRG.8532.1,Trinity_GG_4700_c0_g1_i3,Trinity_GG_4700_c0_g1_i4,blat.proc3829875.chain_962,blat.proc3829875.chain_963	5	STRG.8532.2	1
scaffold_23	spliced_intron	1741287	1741399	+	asmbl_30657,asmbl_30659	none	blat.proc3829883.chain_2547,blat.proc3829883.chain_2549	2	blat.proc3829883.chain_2548	1
scaffold_24	skipped_exon	2430315	2431447	+	asmbl_32104	none	STRG.26445.2,blat.proc3829883.chain_3333	2	STRG.26445.1,blat.proc3829883.chain_3335	2
scaffold_10	retained_exon	9361726	9363040	+	asmbl_4650	none	STRG.12680.1,blat.proc3829877.chain_1198	2	blat.proc3829877.chain_1197	1
scaffold_1	skipped_exon	14962555	14965421	+	asmbl_2394	none	STRG.1069.1,blat.proc3829871.chain_1099	2	STRG.1069.2	1
scaffold_11	starts_in_intron	12901405	12901405	-	asmbl_7083	none	blat.proc3829893.chain_2635	1	STRG.14165.1,STRG.14165.2,blat.proc3829893.chain_2636	3
scaffold_3	retained_intron	3258676	3259114	+	asmbl_39904	none	blat.proc3829871.chain_3297	1	blat.proc3829871.chain_3306,blat.proc3829871.chain_3309	2
scaffold_18	retained_exon	3915822	3916194	-	asmbl_19823	none	STRG.21192.3	1	blat.proc3829897.chain_2089	1
scaffold_5	alt_acceptor	5045423	5045424	+	asmbl_43994	none	STRG.5951.2,blat.proc3829873.chain_2112	2	STRG.5951.1,blat.proc3829873.chain_2107,blat.proc3829873.chain_2113	3
scaffold_14	skipped_exon	1590384	1591852	-	asmbl_12872,asmbl_12873,asmbl_12874	none	STRG.16786.1,STRG.16786.2,STRG.16786.3,blat.proc3829895.chain_1442,blat.proc3829895.chain_1443,blat.proc3829895.chain_1444	6	STRG.16786.5	1
scaffold_11	spliced_intron	13541271	13541378	+	asmbl_6037	none	STRG.14199.1,Trinity_GG_7827_c0_g1_i2,blat.proc3829877.chain_2686	3	STRG.14199.2,Trinity_GG_7827_c0_g1_i1,blat.proc3829877.chain_2687	3
scaffold_2	alternate_exon	11783279	11783318	+	asmbl_24804	none	Trinity_GG_1272_c0_g1_i2,blat.proc3829871.chain_2367	2	STRG.2276.1,blat.proc3829871.chain_2368	2
scaffold_8	retained_intron	11760968	11761396	-	asmbl_53161	none	STRG.10372.1,blat.proc3829891.chain_2447	2	STRG.10372.3	1
scaffold_6	retained_intron	7516493	7516579	-	asmbl_48434	none	STRG.7647.2,blat.proc3829889.chain_3681	2	STRG.7647.3,blat.proc3829889.chain_3683	2
scaffold_1	retained_intron	20132580	20132927	+	asmbl_2595	none	Trinity_GG_783_c0_g1_i1,blat.proc3829871.chain_1380	2	STRG.1378.1,Trinity_GG_783_c0_g2_i1,blat.proc3829871.chain_1381	3
scaffold_6	starts_in_intron	16292594	16292594	-	asmbl_49048	none	blat.proc3829891.chain_669	1	STRG.8349.1,blat.proc3829891.chain_666	2
scaffold_13	skipped_exon	8699211	8700085	+	asmbl_11125	none	STRG.16125.2,blat.proc3829879.chain_809	2	STRG.16125.1,blat.proc3829879.chain_807,blat.proc3829879.chain_808	3
scaffold_26	starts_in_intron	3562759	3562759	+	asmbl_35324	none	STRG.28018.5	1	STRG.28018.1,STRG.28018.2,STRG.28018.4,blat.proc3829885.chain_1001,blat.proc3829885.chain_1003,blat.proc3829885.chain_1005	6
scaffold_2	skipped_exon	6760394	6761638	-	asmbl_23260	none	STRG.2030.4	1	STRG.2030.1,STRG.2030.2,STRG.2030.3,blat.proc3829887.chain_1918,blat.proc3829887.chain_1919,blat.proc3829887.chain_1920	6
scaffold_7	spliced_intron	11121409	11121518	-	asmbl_49960	none	STRG.9248.1,blat.proc3829891.chain_1483	2	Trinity_GG_22226_c0_g1_i1,blat.proc3829891.chain_1484	2
scaffold_9	retained_exon	9530592	9530675	-	asmbl_55155,asmbl_55156,asmbl_55158	none	STRG.11302.1,STRG.11302.2,blat.proc3829891.chain_3449,blat.proc3829891.chain_3450	4	blat.proc3829891.chain_3448	1
scaffold_3	retained_exon	14531538	14531594	-	asmbl_39341	none	STRG.3791.2,blat.proc3829887.chain_3635	2	STRG.3791.1,blat.proc3829887.chain_3636	2
scaffold_1	alt_acceptor	1966737	1966738	-	asmbl_91	none	STRG.119.1,blat.proc3829887.chain_32	2	STRG.119.2	1
scaffold_5	spliced_intron	12915260	12915370	-	asmbl_45871,asmbl_45872	none	STRG.6515.1,STRG.6515.2,blat.proc3829889.chain_2568,blat.proc3829889.chain_2569	4	blat.proc3829889.chain_2570	1
scaffold_7	retained_intron	9311935	9312011	+	asmbl_50960	none	blat.proc3829875.chain_1610	1	STRG.9133.1,Trinity_GG_5081_c0_g1_i1,Trinity_GG_5081_c0_g1_i2,blat.proc3829875.chain_1611,blat.proc3829875.chain_1612	5
scaffold_26	spliced_intron	9514352	9514514	+	asmbl_35761	none	STRG.28482.2	1	blat.proc3829885.chain_1510	1
scaffold_13	alt_donor	87947	87948	+	asmbl_10429	none	STRG.15412.2	1	STRG.15412.3	1
scaffold_5	starts_in_intron	4097009	4097009	-	asmbl_45337	none	blat.proc3829889.chain_1941	1	STRG.5875.1,blat.proc3829889.chain_1940	2
scaffold_7	spliced_intron	6042675	6043339	-	asmbl_49726	none	STRG.8899.3	1	STRG.8899.1,Trinity_GG_22045_c0_g1_i2,Trinity_GG_22045_c0_g1_i5,blat.proc3829891.chain_1182	4
scaffold_3	retained_exon	1763823	1763894	+	asmbl_39824,asmbl_39826,asmbl_39827,asmbl_39828,asmbl_39830,asmbl_39831	none	STRG.2991.1,STRG.2991.3,blat.proc3829871.chain_3179,blat.proc3829871.chain_3180,blat.proc3829871.chain_3181,blat.proc3829871.chain_3182,blat.proc3829871.chain_3184,blat.proc3829871.chain_3185	8	STRG.2991.4,blat.proc3829871.chain_3183	2
scaffold_10	skipped_exon	1112389	1112874	+	asmbl_4184	none	STRG.11989.2,Trinity_GG_6668_c0_g1_i1,blat.proc3829877.chain_691	3	STRG.11989.1,Trinity_GG_6668_c0_g1_i2,blat.proc3829877.chain_692	3
scaffold_20	starts_in_intron	2389543	2389543	-	asmbl_26566	none	STRG.22957.1,blat.proc3829897.chain_3729	2	STRG.22957.2,STRG.22957.3,blat.proc3829897.chain_3728	3
scaffold_2	alt_acceptor	6652240	6652241	+	asmbl_24514	none	STRG.2024.2,blat.proc3829871.chain_2083	2	STRG.2024.1,blat.proc3829871.chain_2085	2
scaffold_8	spliced_intron	7508319	7508462	+	asmbl_51977	none	STRG.10068.1,blat.proc3829875.chain_2585	2	STRG.10068.2,Trinity_GG_5605_c0_g1_i1,blat.proc3829875.chain_2586	3
scaffold_22	alternate_exon	1703905	1705691	-	asmbl_29910,asmbl_29911	none	STRG.24746.1,STRG.24746.2,Trinity_GG_30839_c0_g1_i1,Trinity_GG_30839_c0_g1_i3,blat.proc3829899.chain_1868,blat.proc3829899.chain_1870	6	blat.proc3829899.chain_1869	1
scaffold_7	starts_in_intron	11767829	11767829	+	asmbl_51067	none	blat.proc3829875.chain_1736	1	STRG.9278.1,STRG.9278.2,blat.proc3829875.chain_1735,blat.proc3829875.chain_1737	4
scaffold_2	spliced_intron	15274444	15274538	+	asmbl_25032,asmbl_25033,asmbl_25035,asmbl_25036,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25044,asmbl_25045	none	STRG.2481.1,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2533,blat.proc3829871.chain_2534,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	9	blat.proc3829871.chain_2536	1
scaffold_6	retained_intron	17670897	17672065	+	asmbl_47711,asmbl_47714	none	STRG.8454.2,Trinity_GG_4651_c0_g1_i4,blat.proc3829875.chain_848,blat.proc3829875.chain_849	4	STRG.8454.1,Trinity_GG_4651_c0_g1_i2,Trinity_GG_4651_c0_g1_i5,blat.proc3829875.chain_847,blat.proc3829875.chain_850	5
scaffold_6	retained_intron	19076979	19077208	+	asmbl_47817	none	Trinity_GG_4663_c0_g1_i6,blat.proc3829875.chain_868	2	STRG.8572.1,STRG.8572.4,Trinity_GG_4663_c0_g1_i2,Trinity_GG_4663_c0_g1_i5,blat.proc3829875.chain_865,blat.proc3829875.chain_867	6
scaffold_24	alt_donor	3754085	3754086	-	asmbl_32831,asmbl_32833	none	STRG.26554.1,STRG.26554.2,blat.proc3829899.chain_3616	3	Trinity_GG_31855_c0_g1_i2,blat.proc3829899.chain_3613	2
scaffold_12	retained_intron	14989527	14989630	-	asmbl_8159	none	Trinity_GG_25571_c0_g1_i5,blat.proc3829893.chain_3741	2	STRG.15282.4	1
scaffold_18	alt_donor	5584877	5584878	-	asmbl_19903	none	STRG.21304.2	1	STRG.21304.1,blat.proc3829897.chain_2194	2
scaffold_8	ends_in_intron	17795318	17795318	+	asmbl_52493	none	Trinity_GG_5881_c0_g1_i3,blat.proc3829875.chain_3074	2	STRG.10684.1,Trinity_GG_5881_c0_g1_i1,blat.proc3829875.chain_3073,blat.proc3829875.chain_3078	4
scaffold_1	retained_intron	1993732	1994147	+	asmbl_1523	none	Trinity_GG_103_c1_g1_i1,blat.proc3829871.chain_179	2	STRG.126.1,STRG.126.2,Trinity_GG_103_c0_g1_i2,blat.proc3829871.chain_176,blat.proc3829871.chain_177,blat.proc3829871.chain_178	6
scaffold_9	spliced_intron	119321	119545	+	asmbl_53733	none	STRG.10764.2,blat.proc3829875.chain_3264	2	Trinity_GG_5979_c0_g1_i4	1
scaffold_21	spliced_intron	8529725	8529850	+	asmbl_28828,asmbl_28832	none	STRG.24375.1,blat.proc3829883.chain_1391,blat.proc3829883.chain_1392,blat.proc3829883.chain_1393	4	blat.proc3829883.chain_1389	1
scaffold_14	starts_in_intron	13581535	13581535	-	asmbl_13629	none	blat.proc3829895.chain_2369	1	STRG.17623.1,STRG.17623.2,blat.proc3829895.chain_2370,blat.proc3829895.chain_2371	4
scaffold_16	ends_in_intron	6148262	6148262	+	asmbl_17074	none	blat.proc3829881.chain_212	1	STRG.19342.1,blat.proc3829881.chain_208,blat.proc3829881.chain_209,blat.proc3829881.chain_214	4
scaffold_14	skipped_exon	6449782	6450530	-	asmbl_13117	none	STRG.17077.2	1	STRG.17077.1,blat.proc3829895.chain_1808	2
scaffold_7	alt_acceptor	3951463	3951464	-	asmbl_49641	none	STRG.8790.2,blat.proc3829891.chain_1145	2	STRG.8790.1,blat.proc3829891.chain_1144	2
scaffold_11	ends_in_intron	9810741	9810741	+	asmbl_5860	none	blat.proc3829877.chain_2472	1	STRG.13982.1,STRG.13982.2,blat.proc3829877.chain_2471	3
scaffold_1	alt_donor	16487426	16487427	-	asmbl_993	none	STRG.1157.2,blat.proc3829887.chain_1053	2	STRG.1157.1,blat.proc3829887.chain_1054,blat.proc3829887.chain_1057	3
scaffold_20	spliced_intron	1126444	1126470	-	asmbl_26475	none	blat.proc3829897.chain_3595	1	STRG.22810.1	1
scaffold_15	alt_donor	165784	165785	+	asmbl_13888	none	STRG.17858.1	1	STRG.17858.2	1
scaffold_5	alt_acceptor	13320094	13320095	-	asmbl_45915,asmbl_45917,asmbl_45918,asmbl_45919	none	STRG.6578.1,blat.proc3829889.chain_2545,blat.proc3829889.chain_2546,blat.proc3829889.chain_2547	4	STRG.6578.2	1
scaffold_1325	alt_donor	1702	1703	+	asmbl_11685,asmbl_11687	none	STRG.30565.3,STRG.30565.4	2	STRG.30565.1,STRG.30565.2,Trinity_GG_16889_c0_g1_i2,blat.proc3829885.chain_3503	4
scaffold_24	starts_in_intron	8126902	8126902	+	asmbl_32418	none	Trinity_GG_14836_c1_g1_i2,blat.proc3829883.chain_3728	2	blat.proc3829883.chain_3726,blat.proc3829883.chain_3727	2
scaffold_19	spliced_intron	12686175	12686347	-	asmbl_21738,asmbl_21739,asmbl_21741	none	STRG.22579.1,STRG.22579.2,blat.proc3829897.chain_3330,blat.proc3829897.chain_3331,blat.proc3829897.chain_3332	5	blat.proc3829897.chain_3329	1
scaffold_15	alternate_exon	16342534	16345669	-	asmbl_15842	none	STRG.18978.1,blat.proc3829895.chain_3741	2	STRG.18978.2,blat.proc3829895.chain_3740	2
scaffold_11	starts_in_intron	3784846	3784846	-	asmbl_6558	none	blat.proc3829893.chain_1956	1	STRG.13495.1,blat.proc3829893.chain_1957	2
scaffold_6	spliced_intron	3805997	3806086	+	asmbl_46809	none	Trinity_GG_4055_c0_g1_i12,blat.proc3829873.chain_3525	2	STRG.7379.1,STRG.7379.3,Trinity_GG_4055_c0_g1_i10,blat.proc3829873.chain_3520	4
scaffold_4	alt_donor	12571398	12571399	-	asmbl_41675	none	STRG.4898.2,blat.proc3829889.chain_966	2	STRG.4898.1,blat.proc3829889.chain_965	2
scaffold_26	retained_intron	9083212	9083394	-	asmbl_35034,asmbl_35037	none	STRG.28453.4,blat.proc3829901.chain_1596	2	STRG.28453.1,STRG.28453.2,STRG.28453.3,blat.proc3829901.chain_1595,blat.proc3829901.chain_1598	5
scaffold_6	alt_donor	10483621	10483622	-	asmbl_48641	none	STRG.7880.2,blat.proc3829891.chain_155	2	STRG.7880.1,blat.proc3829891.chain_156	2
scaffold_22	alt_acceptor	10894920	10894921	-	asmbl_30398,asmbl_30399	none	STRG.25411.1,STRG.25411.2,blat.proc3829899.chain_2451,blat.proc3829899.chain_2452	4	STRG.25411.3	1
scaffold_17	alt_donor	536133	536134	+	asmbl_17669,asmbl_17671,asmbl_17674,asmbl_17677	none	STRG.19892.1,STRG.19892.2,blat.proc3829881.chain_740,blat.proc3829881.chain_742,blat.proc3829881.chain_744	5	STRG.19892.3,STRG.19892.4,blat.proc3829881.chain_739,blat.proc3829881.chain_743	4
scaffold_8	starts_in_intron	16546516	16546516	-	asmbl_53435	none	Trinity_GG_22929_c0_g1_i4,blat.proc3829891.chain_2799	2	STRG.10629.1,STRG.10629.2,Trinity_GG_22929_c0_g1_i5,blat.proc3829891.chain_2798,blat.proc3829891.chain_2800,blat.proc3829891.chain_2801	6
scaffold_13	retained_intron	8353056	8353594	+	asmbl_11113	none	blat.proc3829879.chain_891	1	STRG.16112.1,STRG.16112.2,blat.proc3829879.chain_892	3
scaffold_6	ends_in_intron	3229018	3229018	+	asmbl_46765,asmbl_46767	none	STRG.7322.2,blat.proc3829873.chain_3360,blat.proc3829873.chain_3361	3	STRG.7322.3,blat.proc3829873.chain_3362	2
scaffold_2	alternate_exon	18647510	18647756	-	asmbl_23827	none	STRG.2740.2	1	STRG.2740.1,blat.proc3829887.chain_2579	2
scaffold_26	alternate_exon	4818229	4818399	+	asmbl_35453,asmbl_35455	none	STRG.28182.1,blat.proc3829885.chain_1145,blat.proc3829885.chain_1147	3	STRG.28182.2,blat.proc3829885.chain_1146	2
scaffold_25	skipped_exon	9119329	9120031	+	asmbl_33775	none	STRG.27709.2	1	STRG.27709.3	1
scaffold_2	ends_in_intron	15673300	15673300	-	asmbl_23665	none	blat.proc3829887.chain_2378	1	STRG.2519.2,blat.proc3829887.chain_2379	2
scaffold_1	retained_intron	7773078	7773240	+	asmbl_1911	none	STRG.537.2,blat.proc3829871.chain_602	2	blat.proc3829871.chain_603,blat.proc3829871.chain_604	2
scaffold_17	alt_donor	4809596	4809597	-	asmbl_18932	none	STRG.20208.2,blat.proc3829897.chain_1106	2	STRG.20208.1	1
scaffold_4	starts_in_intron	17571905	17571905	-	asmbl_42040	none	STRG.5346.2	1	STRG.5346.1,STRG.5346.3,STRG.5346.4,blat.proc3829889.chain_1330	4
scaffold_17	spliced_intron	793736	793904	+	asmbl_17704,asmbl_17705	none	STRG.19917.1,STRG.19917.2	2	Trinity_GG_10882_c0_g1_i2,blat.proc3829881.chain_712	2
scaffold_15	spliced_intron	15207429	15207667	-	asmbl_15777	none	STRG.18902.1,blat.proc3829895.chain_3681	2	blat.proc3829895.chain_3682	1
scaffold_7	spliced_intron	15247476	15247936	+	asmbl_51302,asmbl_51305	none	STRG.9529.3,blat.proc3829875.chain_2038,blat.proc3829875.chain_2041	3	STRG.9529.2,Trinity_GG_5316_c0_g1_i1,blat.proc3829875.chain_2037,blat.proc3829875.chain_2042,blat.proc3829875.chain_2043	5
scaffold_6	skipped_exon	9909894	9911434	+	asmbl_47186	none	STRG.7827.2	1	STRG.7827.1	1
scaffold_5	starts_in_intron	19004306	19004306	-	asmbl_46258	none	Trinity_GG_20894_c0_g1_i1	1	STRG.7008.1,blat.proc3829889.chain_2955	2
scaffold_1	retained_exon	11446791	11447131	-	asmbl_624	none	STRG.752.1,blat.proc3829887.chain_603	2	STRG.752.2	1
scaffold_12	ends_in_intron	4103363	4103363	+	asmbl_8539	none	blat.proc3829877.chain_3100	1	STRG.14584.3	1
scaffold_20	spliced_intron	5923668	5924973	-	asmbl_26710,asmbl_26712,asmbl_26713	none	STRG.23184.2,blat.proc3829899.chain_145,blat.proc3829899.chain_148,blat.proc3829899.chain_150	4	STRG.23184.4,Trinity_GG_29913_c0_g1_i4,blat.proc3829899.chain_146	3
scaffold_5	retained_intron	9092983	9093116	+	asmbl_44274	none	blat.proc3829873.chain_2407	1	STRG.6239.1,blat.proc3829873.chain_2405,blat.proc3829873.chain_2406	3
scaffold_23	alt_donor	1540961	1540962	-	asmbl_31375	none	STRG.25612.3,blat.proc3829899.chain_2717	2	STRG.25612.1,STRG.25612.2,blat.proc3829899.chain_2718,blat.proc3829899.chain_2719	4
scaffold_26	retained_intron	6721964	6722044	+	asmbl_35634	none	STRG.28354.2,blat.proc3829885.chain_1285	2	STRG.28354.1,blat.proc3829885.chain_1286	2
scaffold_22	retained_intron	1707174	1707269	-	asmbl_29911	none	STRG.24746.2,Trinity_GG_30839_c0_g1_i1,blat.proc3829899.chain_1870	3	STRG.24746.1,Trinity_GG_30839_c0_g1_i3,blat.proc3829899.chain_1868	3
scaffold_10	spliced_intron	6074390	6075518	-	asmbl_3341,asmbl_3342,asmbl_3348,asmbl_3349,asmbl_3350	none	STRG.12437.1,STRG.12437.2,STRG.12437.5,blat.proc3829893.chain_919,blat.proc3829893.chain_921	5	STRG.12437.3,blat.proc3829893.chain_918,blat.proc3829893.chain_922,blat.proc3829893.chain_923,blat.proc3829893.chain_924	5
scaffold_6	alt_acceptor	13691124	13691125	+	asmbl_47466	none	STRG.8108.2	1	STRG.8108.1,blat.proc3829875.chain_479	2
scaffold_14	starts_in_intron	16038443	16038443	+	asmbl_12644	none	blat.proc3829879.chain_2488,blat.proc3829879.chain_2489	2	STRG.17831.1	1
scaffold_6	ends_in_intron	3225941	3225941	+	asmbl_46766	none	blat.proc3829873.chain_3364	1	STRG.7322.2,STRG.7322.3,blat.proc3829873.chain_3361,blat.proc3829873.chain_3362	4
scaffold_15	retained_exon	9641687	9641740	-	asmbl_15412,asmbl_15413	none	blat.proc3829895.chain_3178,blat.proc3829895.chain_3185	2	blat.proc3829895.chain_3177	1
scaffold_7	retained_intron	5063228	5063324	-	asmbl_49684	none	STRG.8832.2,blat.proc3829891.chain_1156	2	STRG.8832.1	1
scaffold_21	alt_acceptor	11261503	11261504	-	asmbl_28132	none	STRG.24586.1,Trinity_GG_30772_c0_g1_i5,blat.proc3829899.chain_1743	3	Trinity_GG_30772_c0_g1_i3,Trinity_GG_30772_c0_g1_i4,blat.proc3829899.chain_1742,blat.proc3829899.chain_1744	4
scaffold_27	retained_exon	7193619	7193775	-	asmbl_37048	none	STRG.29056.1,blat.proc3829901.chain_2212	2	STRG.29056.2,blat.proc3829901.chain_2211	2
scaffold_5	retained_intron	16258346	16258731	+	asmbl_44726	none	Trinity_GG_3697_c0_g1_i1	1	STRG.6805.1,Trinity_GG_3697_c0_g1_i2	2
scaffold_27	alt_donor	5654003	5654004	+	asmbl_36308	none	STRG.28952.3	1	STRG.28952.1,STRG.28952.2,blat.proc3829885.chain_2031,blat.proc3829885.chain_2032	4
scaffold_17	alternate_exon	5424565	5424601	-	asmbl_18975	none	STRG.20247.2,blat.proc3829897.chain_1161	2	STRG.20247.1,blat.proc3829897.chain_1160	2
scaffold_16	alternate_exon	7216375	7240373	-	asmbl_16344,asmbl_16347	none	STRG.19382.1,STRG.19382.3,Trinity_GG_27897_c0_g1_i20,blat.proc3829897.chain_409	4	STRG.19382.9	1
scaffold_24	starts_in_intron	8751263	8751263	-	asmbl_33096	none	blat.proc3829901.chain_158	1	STRG.26871.1,STRG.26871.2,blat.proc3829901.chain_159,blat.proc3829901.chain_160,blat.proc3829901.chain_161	5
scaffold_11	ends_in_intron	9652131	9652131	-	asmbl_6927	none	blat.proc3829893.chain_2393	1	STRG.13972.1,STRG.13972.2,blat.proc3829893.chain_2392	3
scaffold_8	retained_intron	16141006	16141091	-	asmbl_53371	none	blat.proc3829891.chain_2743	1	STRG.10597.1,blat.proc3829891.chain_2741,blat.proc3829891.chain_2742,blat.proc3829891.chain_2745	4
scaffold_16	alternate_exon	7531944	7533708	+	asmbl_17144	none	STRG.19399.1,blat.proc3829881.chain_274	2	STRG.19399.3,blat.proc3829881.chain_273	2
scaffold_6	spliced_intron	15095011	15095132	+	asmbl_47592	none	STRG.8263.2	1	STRG.8263.1,Trinity_GG_4547_c0_g1_i1,blat.proc3829875.chain_668	3
scaffold_19	starts_in_intron	3670166	3670166	-	asmbl_21329	none	STRG.22034.4	1	STRG.22034.1,STRG.22034.3,Trinity_GG_29269_c0_g1_i2,Trinity_GG_29269_c0_g1_i6,blat.proc3829897.chain_2742,blat.proc3829897.chain_2743,blat.proc3829897.chain_2745	7
scaffold_7	starts_in_intron	8614846	8614846	+	asmbl_50916	none	blat.proc3829875.chain_1500	1	STRG.9089.1,STRG.9089.2,blat.proc3829875.chain_1501,blat.proc3829875.chain_1503	4
scaffold_3	skipped_exon	13896910	13897119	+	asmbl_40427,asmbl_40428	none	STRG.3737.2,blat.proc3829873.chain_145	2	STRG.3737.1,blat.proc3829873.chain_143,blat.proc3829873.chain_144	3
scaffold_11	alt_donor	16529973	16529974	+	asmbl_6140	none	STRG.14333.1,blat.proc3829877.chain_2816	2	STRG.14333.2	1
scaffold_7	alternate_exon	12451191	12451321	-	asmbl_50047	none	STRG.9342.3	1	STRG.9342.1,STRG.9342.2,STRG.9342.4,Trinity_GG_22282_c1_g1_i7,Trinity_GG_22282_c1_g1_i9,blat.proc3829891.chain_1604,blat.proc3829891.chain_1605,blat.proc3829891.chain_1606,blat.proc3829891.chain_1607,blat.proc3829891.chain_1608,blat.proc3829891.chain_1611,blat.proc3829891.chain_1614	12
scaffold_5	retained_intron	6737990	6738085	-	asmbl_45521	none	Trinity_GG_20424_c0_g1_i4,blat.proc3829889.chain_2156	2	STRG.6075.1	1
scaffold_13	retained_intron	3704686	3704754	-	asmbl_9523,asmbl_9524,asmbl_9525,asmbl_9527	none	STRG.15671.1,STRG.15671.3,STRG.15671.5,STRG.15671.6,blat.proc3829895.chain_438,blat.proc3829895.chain_439	6	STRG.15671.4	1
scaffold_5	starts_in_intron	12268897	12268897	+	asmbl_44462	none	STRG.6455.2	1	STRG.6455.1,blat.proc3829873.chain_2621	2
scaffold_15	alt_donor	6958499	6958500	-	asmbl_15288,asmbl_15289,asmbl_15290	none	STRG.18291.1,STRG.18291.2,STRG.18291.3,blat.proc3829895.chain_3051,blat.proc3829895.chain_3052,blat.proc3829895.chain_3054	6	STRG.18291.4,blat.proc3829895.chain_3053	2
scaffold_4	alt_donor	12571451	12571452	-	asmbl_41674	none	STRG.4898.1,blat.proc3829889.chain_965	2	STRG.4898.2,blat.proc3829889.chain_966	2
scaffold_16	retained_intron	6193425	6193670	+	asmbl_17085,asmbl_17087,asmbl_17088,asmbl_17089,asmbl_17091	none	STRG.19373.1,STRG.19373.3,STRG.19373.4,blat.proc3829881.chain_125,blat.proc3829881.chain_126,blat.proc3829881.chain_131	6	STRG.19373.2,blat.proc3829881.chain_127,blat.proc3829881.chain_128	3
scaffold_10	spliced_intron	13471381	13471638	-	asmbl_3789,asmbl_3790,asmbl_3793,asmbl_3794	none	STRG.12931.2,STRG.12931.3,STRG.12931.4,blat.proc3829893.chain_1418,blat.proc3829893.chain_1419	5	STRG.12931.1,Trinity_GG_24242_c0_g2_i3,blat.proc3829893.chain_1416,blat.proc3829893.chain_1417	4
scaffold_8	spliced_intron	7446652	7446732	-	asmbl_52896,asmbl_52897	none	STRG.10064.1,blat.proc3829891.chain_2174,blat.proc3829891.chain_2176	3	blat.proc3829891.chain_2177	1
scaffold_5	alternate_exon	16741393	16741837	-	asmbl_46152	none	STRG.6857.2,Trinity_GG_20862_c0_g1_i2,blat.proc3829889.chain_2902	3	STRG.6857.1,Trinity_GG_20862_c0_g1_i1,blat.proc3829889.chain_2901	3
scaffold_28	starts_in_intron	5637122	5637122	-	asmbl_37632	none	Trinity_GG_33665_c0_g1_i6,blat.proc3829901.chain_2826	2	STRG.29677.2,STRG.29677.3,STRG.29677.4,Trinity_GG_33665_c0_g1_i3,blat.proc3829901.chain_2827	5
scaffold_21	spliced_intron	7928625	7928725	+	asmbl_28787	none	STRG.24313.4,blat.proc3829883.chain_1452	2	STRG.24313.5	1
scaffold_26	alternate_exon	5158155	5158239	+	asmbl_35493	none	STRG.28205.1,Trinity_GG_15581_c0_g1_i1,blat.proc3829885.chain_1216	3	STRG.28205.2,Trinity_GG_15581_c0_g1_i2,blat.proc3829885.chain_1215	3
scaffold_12	alt_donor	15265775	15265776	-	asmbl_8197,asmbl_8198,asmbl_8199,asmbl_8201,asmbl_8203	none	STRG.15320.1,STRG.15320.2,STRG.15320.3,STRG.15320.5,Trinity_GG_25603_c0_g1_i1,Trinity_GG_25603_c0_g1_i3,blat.proc3829895.chain_52,blat.proc3829895.chain_53,blat.proc3829895.chain_54	9	STRG.15320.4	1
scaffold_1	retained_intron	14320593	14320863	+	asmbl_2360	none	blat.proc3829871.chain_1127	1	STRG.1024.2,STRG.1024.3,STRG.1024.4,blat.proc3829871.chain_1126,blat.proc3829871.chain_1128,blat.proc3829871.chain_1130	6
scaffold_28	skipped_exon	56889	58087	-	asmbl_37210	none	blat.proc3829901.chain_2317	1	STRG.29222.1,Trinity_GG_33360_c0_g1_i2,blat.proc3829901.chain_2318,blat.proc3829901.chain_2319	4
scaffold_9	skipped_exon	15384227	15384899	+	asmbl_54538,asmbl_54539,asmbl_54542	none	STRG.11728.2,blat.proc3829877.chain_488,blat.proc3829877.chain_489,blat.proc3829877.chain_491	4	STRG.11728.1,blat.proc3829877.chain_490,blat.proc3829877.chain_493	3
scaffold_15	spliced_intron	9817941	9818374	+	asmbl_14358,asmbl_14361,asmbl_14362	none	STRG.18487.1,blat.proc3829879.chain_3044,blat.proc3829879.chain_3046,blat.proc3829879.chain_3047	4	STRG.18487.2,blat.proc3829879.chain_3042,blat.proc3829879.chain_3045	3
scaffold_11	alt_donor	17208795	17208796	-	asmbl_7234	none	STRG.14375.2,blat.proc3829893.chain_2785	2	STRG.14375.1,blat.proc3829893.chain_2783	2
scaffold_28	alt_donor	7884669	7884670	+	asmbl_38409	none	STRG.29835.2	1	STRG.29835.1,Trinity_GG_16522_c0_g1_i1,blat.proc3829885.chain_2918	3
scaffold_2	alt_donor	1318012	1318013	+	asmbl_24203,asmbl_24204,asmbl_24205	none	STRG.1604.1,blat.proc3829871.chain_1713,blat.proc3829871.chain_1714	3	STRG.1604.2	1
scaffold_14	alt_acceptor	6699546	6699547	+	asmbl_12080	none	STRG.17102.2	1	STRG.17102.1,blat.proc3829879.chain_1868	2
scaffold_5	retained_intron	8413453	8414764	+	asmbl_44211	none	STRG.6180.1,blat.proc3829873.chain_2248	2	STRG.6180.2,STRG.6180.3,blat.proc3829873.chain_2249	3
scaffold_13	retained_intron	7655418	7655568	+	asmbl_11045	none	Trinity_GG_8822_c0_g1_i6,blat.proc3829879.chain_777,blat.proc3829879.chain_779	3	STRG.16039.1,blat.proc3829879.chain_775,blat.proc3829879.chain_780,blat.proc3829879.chain_781	4
scaffold_8	skipped_exon	16040106	16040586	-	asmbl_53356	none	STRG.10578.2,blat.proc3829891.chain_2727	2	STRG.10578.1,blat.proc3829891.chain_2728	2
scaffold_24	starts_in_intron	7101327	7101327	+	asmbl_32372	none	Trinity_GG_14790_c0_g1_i1,blat.proc3829883.chain_3644	2	STRG.26741.1,STRG.26741.2	2
scaffold_18	alt_donor	13802531	13802532	+	asmbl_21054,asmbl_21055	none	STRG.21804.1,STRG.21804.2,Trinity_GG_12056_c2_g1_i2,blat.proc3829881.chain_2763	4	blat.proc3829881.chain_2762	1
scaffold_21	spliced_intron	5979198	5979219	-	asmbl_27738	none	STRG.24126.1	1	STRG.24126.2,STRG.24126.3	2
scaffold_18	alternate_exon	13464132	13464236	+	asmbl_21040	none	Trinity_GG_12008_c0_g1_i1,blat.proc3829881.chain_2680	2	blat.proc3829881.chain_2679,blat.proc3829881.chain_2681	2
scaffold_4	spliced_intron	3528251	3528359	-	asmbl_41190	none	STRG.4277.3	1	STRG.4277.1	1
scaffold_26	starts_in_intron	3942198	3942198	-	asmbl_34788	none	STRG.28066.3	1	STRG.28066.2,blat.proc3829901.chain_1288	2
scaffold_19	starts_in_intron	11798988	11798988	+	asmbl_22530,asmbl_22531	none	Trinity_GG_12452_c0_g1_i4,blat.proc3829881.chain_3452,blat.proc3829881.chain_3454	3	STRG.22495.1,blat.proc3829881.chain_3453	2
scaffold_8	starts_in_intron	16504493	16504493	-	asmbl_53406,asmbl_53409,asmbl_53410,asmbl_53415	none	STRG.10621.2,Trinity_GG_22960_c0_g1_i18,Trinity_GG_22960_c0_g1_i19,Trinity_GG_22960_c0_g1_i9,blat.proc3829891.chain_2856,blat.proc3829891.chain_2857,blat.proc3829891.chain_2858,blat.proc3829891.chain_2872	8	STRG.10621.1,STRG.10621.3,STRG.10621.4,STRG.10621.5,Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2859,blat.proc3829891.chain_2860,blat.proc3829891.chain_2862,blat.proc3829891.chain_2863,blat.proc3829891.chain_2864,blat.proc3829891.chain_2865,blat.proc3829891.chain_2867,blat.proc3829891.chain_2868,blat.proc3829891.chain_2869,blat.proc3829891.chain_2870,blat.proc3829891.chain_2871	20
scaffold_28	retained_intron	5014676	5014754	+	asmbl_38254	none	Trinity_GG_16433_c0_g2_i1,blat.proc3829885.chain_2756	2	STRG.29628.1,STRG.29628.2,Trinity_GG_16433_c0_g2_i3,blat.proc3829885.chain_2754,blat.proc3829885.chain_2757	5
scaffold_1	spliced_intron	1533624	1533762	+	asmbl_1482	none	STRG.94.1,Trinity_GG_67_c0_g1_i2,blat.proc3829871.chain_118	3	Trinity_GG_67_c0_g1_i1,blat.proc3829871.chain_117	2
scaffold_9	spliced_intron	9653406	9653486	+	asmbl_54209	none	STRG.11332.2	1	STRG.11332.1,blat.proc3829877.chain_100,blat.proc3829877.chain_98,blat.proc3829877.chain_99	4
scaffold_4	alt_donor	13587806	13587807	+	asmbl_43139,asmbl_43140	none	STRG.4984.1,STRG.4984.2	2	STRG.4984.3,blat.proc3829873.chain_1241,blat.proc3829873.chain_1242	3
scaffold_14	retained_intron	7215130	7215744	+	asmbl_12113,asmbl_12114	none	Trinity_GG_9432_c0_g1_i2,blat.proc3829879.chain_1870,blat.proc3829879.chain_1871	3	STRG.17138.1,Trinity_GG_9432_c0_g1_i1,blat.proc3829879.chain_1872	3
scaffold_4	skipped_exon	16480998	16481263	-	asmbl_41926	none	STRG.5226.1,blat.proc3829889.chain_1289	2	blat.proc3829889.chain_1290	1
scaffold_3	starts_in_intron	14695645	14695645	+	asmbl_40510	none	Trinity_GG_2109_c0_g1_i2,blat.proc3829873.chain_164	2	STRG.3814.1,Trinity_GG_2109_c0_g1_i1,blat.proc3829873.chain_163	3
scaffold_29	alt_acceptor	8296	8297	-	asmbl_38584	none	STRG.29992.1,blat.proc3829901.chain_3090	2	STRG.29992.2	1
scaffold_2	alt_donor	14021377	14021378	+	asmbl_24902,asmbl_24904	none	STRG.2396.1,Trinity_GG_1338_c0_g1_i2,blat.proc3829871.chain_2493,blat.proc3829871.chain_2494	4	STRG.2396.2,STRG.2396.3,Trinity_GG_1338_c0_g1_i4,blat.proc3829871.chain_2492	4
scaffold_6	retained_intron	17881666	17881817	-	asmbl_49147	none	Trinity_GG_21830_c0_g1_i1,blat.proc3829891.chain_765	2	STRG.8474.1,STRG.8474.3,STRG.8474.4,Trinity_GG_21830_c0_g1_i2,Trinity_GG_21830_c0_g1_i3,Trinity_GG_21830_c0_g1_i4,blat.proc3829891.chain_764,blat.proc3829891.chain_766,blat.proc3829891.chain_767	9
scaffold_6	alternate_exon	17166886	17166910	+	asmbl_47673	none	blat.proc3829875.chain_710	1	Trinity_GG_4571_c0_g1_i1	1
scaffold_1	retained_intron	3681459	3682104	+	asmbl_1623,asmbl_1624	none	STRG.237.1,STRG.237.2,blat.proc3829871.chain_290,blat.proc3829871.chain_293	4	STRG.237.3,blat.proc3829871.chain_292	2
scaffold_3	skipped_exon	1423523	1426198	-	asmbl_38662	none	STRG.2958.3,blat.proc3829887.chain_2734	2	STRG.2958.2	1
scaffold_17	alt_acceptor	3143031	3143032	-	asmbl_18849	none	STRG.20085.2	1	STRG.20085.1,STRG.20085.3,Trinity_GG_28260_c0_g1_i1,Trinity_GG_28260_c0_g1_i2,blat.proc3829897.chain_1000,blat.proc3829897.chain_1001	6
scaffold_29	alt_acceptor	8293	8294	-	asmbl_38587	none	STRG.29992.2	1	STRG.29992.1,blat.proc3829901.chain_3090	2
scaffold_18	retained_intron	7867713	7867862	+	asmbl_20825,asmbl_20827,asmbl_20833	none	STRG.21477.4,Trinity_GG_11877_c0_g1_i6,blat.proc3829881.chain_2467,blat.proc3829881.chain_2473,blat.proc3829881.chain_2476	5	STRG.21477.3,STRG.21477.6,Trinity_GG_11877_c0_g1_i7,blat.proc3829881.chain_2468	4
scaffold_28	alt_acceptor	9565713	9565714	+	asmbl_38485	none	STRG.29963.1	1	blat.proc3829885.chain_3033	1
scaffold_19	starts_in_intron	6676703	6676703	-	asmbl_21431	none	blat.proc3829897.chain_2923	1	STRG.22172.1,STRG.22172.2,blat.proc3829897.chain_2922	3
scaffold_5	starts_in_intron	4651649	4651649	-	asmbl_45362	none	blat.proc3829889.chain_1991	1	STRG.5912.1,blat.proc3829889.chain_1992	2
scaffold_13	alt_donor	12142406	12142407	+	asmbl_11319	none	STRG.16332.2,Trinity_GG_8950_c0_g1_i2,blat.proc3829879.chain_1028	3	STRG.16332.1,Trinity_GG_8950_c0_g1_i1,blat.proc3829879.chain_1027	3
scaffold_22	alt_acceptor	17111	17112	+	asmbl_29085	none	STRG.24641.1,Trinity_GG_13603_c0_g1_i1,blat.proc3829883.chain_1659	3	STRG.24641.2	1
scaffold_16	retained_intron	327833	327983	-	asmbl_16026,asmbl_16028,asmbl_16029,asmbl_16030	none	STRG.19019.2,STRG.19019.3,blat.proc3829897.chain_61,blat.proc3829897.chain_62	4	STRG.19019.1,blat.proc3829897.chain_59,blat.proc3829897.chain_60	3
scaffold_12	alt_acceptor	16315383	16315384	-	asmbl_8257	none	STRG.15369.1	1	STRG.15369.2,Trinity_GG_25639_c1_g1_i1,blat.proc3829895.chain_115	3
scaffold_18	starts_in_intron	3697142	3697142	+	asmbl_20499	none	Trinity_GG_11619_c0_g1_i1,blat.proc3829881.chain_1989	2	STRG.21173.1	1
scaffold_1	alt_acceptor	13518391	13518392	-	asmbl_819	none	STRG.962.1,blat.proc3829887.chain_761	2	STRG.962.2,blat.proc3829887.chain_763	2
scaffold_15	alt_donor	15870629	15870630	+	asmbl_14785	none	STRG.18959.2,blat.proc3829879.chain_3576	2	STRG.18959.1,STRG.18959.3	2
scaffold_8	alternate_exon	17302311	17314445	-	asmbl_53452,asmbl_53453	none	STRG.10645.1,STRG.10645.2,STRG.10645.5,blat.proc3829891.chain_2805,blat.proc3829891.chain_2806	5	blat.proc3829891.chain_2804	1
scaffold_5	skipped_exon	237502	239376	-	asmbl_45154	none	STRG.5594.2	1	STRG.5594.1,STRG.5594.3,STRG.5594.4,Trinity_GG_20172_c0_g1_i1,blat.proc3829889.chain_1710	5
scaffold_13	ends_in_intron	7090645	7090645	-	asmbl_9810	none	STRG.16000.3,blat.proc3829895.chain_771	2	STRG.16000.1,STRG.16000.2,blat.proc3829895.chain_770,blat.proc3829895.chain_773,blat.proc3829895.chain_774	5
scaffold_1	skipped_exon	15280038	15281398	+	asmbl_2416	none	STRG.1091.1	1	STRG.1091.2,blat.proc3829871.chain_1167	2
scaffold_9	ends_in_intron	9705924	9705924	+	asmbl_54219	none	STRG.11336.5,blat.proc3829877.chain_112	2	STRG.11336.1,STRG.11336.2,STRG.11336.3,Trinity_GG_6324_c1_g1_i1,blat.proc3829877.chain_109,blat.proc3829877.chain_110,blat.proc3829877.chain_111,blat.proc3829877.chain_114	8
scaffold_22	alt_acceptor	8824536	8824537	+	asmbl_29578	none	STRG.25223.2	1	STRG.25223.4	1
scaffold_2	alternate_exon	8071541	8071581	-	asmbl_23334	none	STRG.2105.1,blat.proc3829887.chain_1996	2	STRG.2105.2	1
scaffold_2	spliced_intron	16403504	16403585	+	asmbl_25171	none	STRG.2580.1,blat.proc3829871.chain_2790	2	blat.proc3829871.chain_2791	1
scaffold_2	spliced_intron	14623203	14623311	+	asmbl_24990	none	STRG.2455.1,blat.proc3829871.chain_2633	2	blat.proc3829871.chain_2632	1
scaffold_14	alt_acceptor	3157075	3157076	+	asmbl_11879,asmbl_11880,asmbl_11881,asmbl_11883,asmbl_11885,asmbl_11889,asmbl_11890,asmbl_11891,asmbl_11893,asmbl_11895,asmbl_11896,asmbl_11897,asmbl_11898	none	STRG.16893.1,STRG.16893.2,STRG.16893.3,blat.proc3829879.chain_1626,blat.proc3829879.chain_1628,blat.proc3829879.chain_1630,blat.proc3829879.chain_1631,blat.proc3829879.chain_1632,blat.proc3829879.chain_1633,blat.proc3829879.chain_1634,blat.proc3829879.chain_1635,blat.proc3829879.chain_1636,blat.proc3829879.chain_1637,blat.proc3829879.chain_1638,blat.proc3829879.chain_1640	15	blat.proc3829879.chain_1625,blat.proc3829879.chain_1629,blat.proc3829879.chain_1639	3
scaffold_2	alt_donor	888427	888428	+	asmbl_24146,asmbl_24147	none	STRG.1564.1,STRG.1564.3,blat.proc3829871.chain_1552	3	STRG.1564.2,STRG.1564.5,Trinity_GG_856_c1_g1_i1,blat.proc3829871.chain_1546,blat.proc3829871.chain_1551	5
scaffold_537	alt_acceptor	3925	3926	-	asmbl_46499	none	STRG.30349.2	1	STRG.30349.1	1
scaffold_13	alt_acceptor	5818733	5818734	+	asmbl_10881	none	STRG.15880.3	1	STRG.15880.1,STRG.15880.4	2
scaffold_9	alt_acceptor	5399980	5399981	+	asmbl_54021	none	STRG.11106.2,blat.proc3829875.chain_3496	2	STRG.11106.1	1
scaffold_5	spliced_intron	14125028	14125150	-	asmbl_45968	none	STRG.6617.1	1	blat.proc3829873.chain_2715	1
scaffold_23	alternate_exon	4101046	4104950	-	asmbl_31554	none	STRG.25802.1	1	STRG.25802.3,blat.proc3829899.chain_2937	2
scaffold_16	retained_intron	5393917	5394344	+	asmbl_17005	none	STRG.19275.2,blat.proc3829881.chain_135	2	STRG.19275.1,Trinity_GG_10554_c0_g1_i2,blat.proc3829881.chain_137	3
scaffold_26	retained_intron	9029889	9029987	+	asmbl_35720	none	Trinity_GG_15748_c0_g1_i2,blat.proc3829885.chain_1489	2	STRG.28448.1,blat.proc3829885.chain_1487	2
scaffold_21	alt_donor	8519278	8519279	-	asmbl_27944	none	STRG.24362.2,blat.proc3829899.chain_1405	2	STRG.24362.1,blat.proc3829899.chain_1404	2
scaffold_5	alt_donor	12903734	12903735	+	asmbl_44505	none	STRG.6513.2	1	STRG.6513.1,blat.proc3829873.chain_2572	2
scaffold_1	retained_exon	22135024	22135231	+	asmbl_2671	none	STRG.1479.2	1	STRG.1479.3	1
scaffold_7	alt_donor	13513464	13513465	+	asmbl_51236	none	STRG.9444.1,Trinity_GG_5247_c0_g1_i1,blat.proc3829875.chain_1908	3	STRG.9444.2,Trinity_GG_5247_c0_g1_i2,blat.proc3829875.chain_1907	3
scaffold_3	alternate_exon	3248163	3265765	+	asmbl_39899	none	STRG.3087.1,blat.proc3829871.chain_3299	2	STRG.3087.3,Trinity_GG_1771_c0_g1_i2,blat.proc3829871.chain_3304,blat.proc3829871.chain_3307	4
scaffold_4	retained_intron	3237961	3238369	-	asmbl_41163,asmbl_41166,asmbl_41168	none	STRG.4247.1,STRG.4247.3,Trinity_GG_19386_c0_g1_i6,blat.proc3829889.chain_369	4	STRG.4247.2,blat.proc3829889.chain_367,blat.proc3829889.chain_371	3
scaffold_11	retained_intron	7819465	7819560	+	asmbl_5649	none	STRG.13772.1,Trinity_GG_7583_c0_g1_i2,blat.proc3829877.chain_2249	3	STRG.13772.2,Trinity_GG_7583_c0_g1_i1,blat.proc3829877.chain_2248	3
scaffold_16	ends_in_intron	14610267	14610267	-	asmbl_16663,asmbl_16664	none	STRG.19837.2,Trinity_GG_28149_c0_g1_i1,blat.proc3829897.chain_801	3	STRG.19837.1,Trinity_GG_28149_c0_g1_i2,Trinity_GG_28149_c0_g1_i3,blat.proc3829897.chain_799,blat.proc3829897.chain_800	5
scaffold_17	alt_acceptor	13959232	13959233	+	asmbl_18487	none	STRG.20873.2,blat.proc3829881.chain_1712	2	STRG.20873.1,blat.proc3829881.chain_1711	2
scaffold_5	retained_intron	18574353	18574611	+	asmbl_44930	none	blat.proc3829873.chain_3099	1	STRG.6982.1,Trinity_GG_3827_c0_g1_i3,blat.proc3829873.chain_3100	3
scaffold_8	spliced_intron	10240030	10240454	+	asmbl_52150,asmbl_52151,asmbl_52152,asmbl_52155	none	STRG.10282.1,STRG.10282.2,STRG.10282.3,Trinity_GG_5715_c0_g1_i3,blat.proc3829875.chain_2790,blat.proc3829875.chain_2791,blat.proc3829875.chain_2792,blat.proc3829875.chain_2794	8	Trinity_GG_5715_c1_g1_i1,blat.proc3829875.chain_2795	2
scaffold_1	starts_in_intron	8638842	8638842	-	asmbl_466,asmbl_467,asmbl_469	none	STRG.568.1,STRG.568.2,STRG.568.3,blat.proc3829887.chain_445,blat.proc3829887.chain_447,blat.proc3829887.chain_449	6	blat.proc3829887.chain_450	1
scaffold_2	skipped_exon	3758002	3759036	-	asmbl_23023	none	blat.proc3829887.chain_1647	1	STRG.1811.1,blat.proc3829887.chain_1646	2
scaffold_25	ends_in_intron	6299833	6299833	+	asmbl_33609	none	STRG.27516.2,blat.proc3829885.chain_475,blat.proc3829885.chain_477	3	STRG.27516.1,blat.proc3829885.chain_476	2
scaffold_24	retained_exon	6291224	6291262	+	asmbl_32305	none	blat.proc3829883.chain_3522	1	STRG.26666.1,blat.proc3829883.chain_3521	2
scaffold_17	alt_acceptor	7049245	7049246	+	asmbl_18019	none	STRG.20358.2,blat.proc3829881.chain_1120	2	Trinity_GG_11134_c1_g1_i1,blat.proc3829881.chain_1119,blat.proc3829881.chain_1122	3
scaffold_28	alt_donor	2465312	2465313	+	asmbl_38067,asmbl_38069	none	STRG.29403.1,blat.proc3829885.chain_2486,blat.proc3829885.chain_2488	3	STRG.29403.2,blat.proc3829885.chain_2487	2
scaffold_15	retained_intron	9573070	9573444	-	asmbl_15406	none	Trinity_GG_27380_c2_g1_i1,blat.proc3829895.chain_3217	2	STRG.18466.1,STRG.18466.2,blat.proc3829895.chain_3215,blat.proc3829895.chain_3216	4
scaffold_5	retained_exon	15628455	15628481	-	asmbl_46091	none	STRG.6749.2,blat.proc3829889.chain_2827	2	STRG.6749.1,blat.proc3829889.chain_2825	2
scaffold_26	spliced_intron	3432400	3432532	+	asmbl_35309,asmbl_35310,asmbl_35311	none	STRG.28008.1,blat.proc3829885.chain_900,blat.proc3829885.chain_902,blat.proc3829885.chain_903	4	blat.proc3829885.chain_901	1
scaffold_6	retained_intron	15087115	15087248	-	asmbl_48986	none	blat.proc3829891.chain_571	1	STRG.8265.1	1
scaffold_22	starts_in_intron	7913935	7913935	+	asmbl_29522	none	Trinity_GG_13930_c1_g1_i1,blat.proc3829883.chain_2217	2	Trinity_GG_13930_c0_g2_i1	1
scaffold_12	alt_donor	14045228	14045229	-	asmbl_8094,asmbl_8096	none	STRG.15216.4,blat.proc3829893.chain_3659	2	STRG.15216.1,STRG.15216.5,blat.proc3829893.chain_3661	3
scaffold_6	alt_acceptor	13193048	13193049	+	asmbl_47422	none	blat.proc3829875.chain_428	1	STRG.8068.1,blat.proc3829875.chain_429,blat.proc3829875.chain_430,blat.proc3829875.chain_432	4
scaffold_13	alt_donor	9240040	9240041	+	asmbl_11164	none	STRG.16167.1,blat.proc3829879.chain_802	2	STRG.16167.2,blat.proc3829879.chain_803	2
scaffold_21	alternate_exon	402606	403076	-	asmbl_27333	none	Trinity_GG_30225_c0_g1_i7,blat.proc3829899.chain_754	2	STRG.23724.2	1
scaffold_2	alt_acceptor	4331414	4331415	-	asmbl_23096	none	STRG.1860.1,blat.proc3829887.chain_1729	2	STRG.1860.2,blat.proc3829887.chain_1730	2
scaffold_2	alt_acceptor	6510601	6510602	-	asmbl_23232,asmbl_23237	none	STRG.2013.1,STRG.2013.3,blat.proc3829887.chain_1931	3	STRG.2013.2,blat.proc3829887.chain_1932	2
scaffold_17	retained_intron	8317665	8317809	+	asmbl_18093,asmbl_18100	none	STRG.20443.1,blat.proc3829881.chain_1253	2	STRG.20443.2,STRG.20443.3,blat.proc3829881.chain_1250	3
scaffold_27	alt_donor	1095250	1095251	+	asmbl_35953	none	blat.proc3829885.chain_1640	1	STRG.28590.1,blat.proc3829885.chain_1641	2
scaffold_8	alt_donor	12411198	12411199	+	asmbl_52304	none	STRG.10415.1	1	STRG.10415.2,Trinity_GG_5808_c0_g1_i2,blat.proc3829875.chain_2937	3
scaffold_19	starts_in_intron	13026534	13026534	-	asmbl_21809	none	STRG.22614.2,blat.proc3829897.chain_3392	2	STRG.22614.1,STRG.22614.3,blat.proc3829897.chain_3393	3
scaffold_19	spliced_intron	5464093	5464178	+	asmbl_22175,asmbl_22178,asmbl_22179	none	STRG.22103.1,blat.proc3829881.chain_3055,blat.proc3829881.chain_3056,blat.proc3829881.chain_3060	4	blat.proc3829881.chain_3057	1
scaffold_4	alt_donor	16317702	16317703	+	asmbl_43297	none	STRG.5205.4	1	STRG.5205.1,STRG.5205.2,STRG.5205.3,blat.proc3829873.chain_1510,blat.proc3829873.chain_1512	5
scaffold_8	starts_in_intron	11742574	11742574	-	asmbl_53159	none	Trinity_GG_22741_c0_g2_i1,blat.proc3829891.chain_2443	2	STRG.10368.2,blat.proc3829891.chain_2441	2
scaffold_13	alt_donor	6415682	6415683	+	asmbl_10920	none	STRG.15918.1	1	STRG.15918.2	1
scaffold_15	spliced_intron	9573070	9573444	-	asmbl_15404,asmbl_15405	none	STRG.18466.1,STRG.18466.2,blat.proc3829895.chain_3215,blat.proc3829895.chain_3216	4	Trinity_GG_27380_c2_g1_i1,blat.proc3829895.chain_3217	2
scaffold_1	ends_in_intron	7791280	7791280	+	asmbl_1916	none	blat.proc3829871.chain_595	1	STRG.536.1,blat.proc3829871.chain_596,blat.proc3829871.chain_598	3
scaffold_5	starts_in_intron	16507881	16507881	+	asmbl_44769	none	Trinity_GG_3732_c0_g1_i3,blat.proc3829873.chain_2954	2	STRG.6832.1,Trinity_GG_3732_c0_g1_i1,blat.proc3829873.chain_2953,blat.proc3829873.chain_2955	4
scaffold_28	alternate_exon	8316598	8316646	-	asmbl_37783	none	STRG.29891.2	1	STRG.29891.1,STRG.29891.3,blat.proc3829901.chain_3015	3
scaffold_24	retained_intron	7173191	7173356	-	asmbl_33007	none	blat.proc3829901.chain_5	1	STRG.26749.1,STRG.26749.2,blat.proc3829901.chain_4	3
scaffold_19	alternate_exon	5345716	5346170	-	asmbl_21361	none	STRG.22090.1	1	STRG.22090.4	1
scaffold_2	starts_in_intron	14275931	14275931	+	asmbl_24934	none	blat.proc3829871.chain_2543	1	STRG.2425.1,STRG.2425.2,blat.proc3829871.chain_2541,blat.proc3829871.chain_2542,blat.proc3829871.chain_2544,blat.proc3829871.chain_2547	6
scaffold_4	alt_donor	3279657	3279658	+	asmbl_42495	none	Trinity_GG_2364_c0_g1_i2,blat.proc3829873.chain_600	2	STRG.4254.1,Trinity_GG_2364_c0_g1_i3,blat.proc3829873.chain_601	3
scaffold_28	retained_exon	8413200	8413268	+	asmbl_38439	none	STRG.29890.1,Trinity_GG_16556_c0_g1_i2,blat.proc3829885.chain_2986	3	STRG.29890.2,Trinity_GG_16556_c0_g1_i1,blat.proc3829885.chain_2985	3
scaffold_14	retained_exon	14148818	14149024	+	asmbl_12512	none	STRG.17676.1	1	STRG.17676.2,blat.proc3829879.chain_2283,blat.proc3829879.chain_2284	3
scaffold_2	alternate_exon	4331736	4332174	-	asmbl_23096	none	STRG.1860.1,blat.proc3829887.chain_1729	2	STRG.1860.2,blat.proc3829887.chain_1730	2
scaffold_10	retained_exon	1292095	1292163	+	asmbl_4205	none	STRG.12009.1,blat.proc3829877.chain_668	2	STRG.12009.2	1
scaffold_15	alt_acceptor	2448195	2448196	+	asmbl_13997	none	STRG.18013.5	1	STRG.18013.2	1
scaffold_21	starts_in_intron	2487000	2487000	+	asmbl_28415	none	blat.proc3829883.chain_1005	1	STRG.23860.1,STRG.23860.2,blat.proc3829883.chain_1004	3
scaffold_7	retained_intron	1387124	1387457	-	asmbl_49532	none	blat.proc3829891.chain_921,blat.proc3829891.chain_926	2	STRG.8638.1,STRG.8638.2,blat.proc3829891.chain_923,blat.proc3829891.chain_924,blat.proc3829891.chain_927	5
scaffold_18	spliced_intron	13649242	13649267	+	asmbl_21049	none	STRG.21786.2	1	blat.proc3829881.chain_2743	1
scaffold_2	alternate_exon	7467432	7469616	-	asmbl_23284	none	Trinity_GG_18127_c0_g1_i23,Trinity_GG_18127_c0_g1_i8,blat.proc3829887.chain_1889,blat.proc3829887.chain_1895	4	blat.proc3829887.chain_1896	1
scaffold_25	alternate_exon	7322670	7322717	-	asmbl_34371	none	blat.proc3829885.chain_601	1	STRG.27566.1,STRG.27566.2,STRG.27566.4	3
scaffold_500	spliced_intron	1334	1625	+	asmbl_46443,asmbl_46444,asmbl_46446,asmbl_46448,asmbl_46449,asmbl_46450	none	STRG.30347.1,STRG.30347.2,STRG.30347.3,STRG.30347.4,blat.proc3829885.chain_3366,blat.proc3829885.chain_3369	6	blat.proc3829885.chain_3364	1
scaffold_15	alt_acceptor	4566578	4566579	+	asmbl_14103,asmbl_14105	none	STRG.18173.3,Trinity_GG_9942_c0_g1_i5,blat.proc3829879.chain_2743	3	STRG.18173.2,Trinity_GG_9942_c0_g1_i4,blat.proc3829879.chain_2745	3
scaffold_701	alt_acceptor	3850	3851	-	asmbl_51554	none	STRG.30415.3	1	STRG.30415.1,STRG.30415.2,blat.proc3829901.chain_3452,blat.proc3829901.chain_3453	4
scaffold_9	spliced_intron	11793088	11794485	-	asmbl_55265,asmbl_55269	none	STRG.11484.2,STRG.11484.3,blat.proc3829891.chain_3591	3	STRG.11484.4,blat.proc3829891.chain_3593	2
scaffold_7	retained_exon	12369335	12369685	+	asmbl_51129	none	blat.proc3829875.chain_1800	1	STRG.9325.1,blat.proc3829875.chain_1799	2
scaffold_21	starts_in_intron	6620719	6620719	+	asmbl_28697,asmbl_28698	none	STRG.24175.1,Trinity_GG_13416_c1_g1_i1,blat.proc3829883.chain_1360	3	Trinity_GG_13416_c1_g1_i2,blat.proc3829883.chain_1361	2
scaffold_17	ends_in_intron	2521250	2521250	-	asmbl_18797	none	blat.proc3829897.chain_921	1	STRG.20032.1,blat.proc3829897.chain_920	2
scaffold_17	alt_acceptor	9530710	9530711	+	asmbl_18234	none	blat.proc3829881.chain_1354	1	STRG.20566.2,Trinity_GG_11250_c0_g1_i3,Trinity_GG_11250_c0_g1_i4,Trinity_GG_11250_c0_g1_i7,blat.proc3829881.chain_1349,blat.proc3829881.chain_1350,blat.proc3829881.chain_1351,blat.proc3829881.chain_1352,blat.proc3829881.chain_1353	9
scaffold_20	ends_in_intron	8760060	8760060	-	asmbl_26934	none	blat.proc3829899.chain_461	1	STRG.23410.1,STRG.23410.2,blat.proc3829899.chain_462	3
scaffold_9	retained_intron	10918975	10919509	+	asmbl_54295	none	STRG.11397.2,blat.proc3829877.chain_187	2	STRG.11397.1,blat.proc3829877.chain_186	2
scaffold_15	retained_exon	9724166	9724204	+	asmbl_14347	none	STRG.18476.1,blat.proc3829879.chain_3079,blat.proc3829879.chain_3080	3	STRG.18476.2	1
scaffold_15	retained_intron	3363099	3363201	-	asmbl_15097	none	Trinity_GG_27191_c0_g1_i4,blat.proc3829895.chain_2839	2	STRG.18095.1,STRG.18095.2,blat.proc3829895.chain_2838	3
scaffold_1	alt_acceptor	4614950	4614951	+	asmbl_1682	none	STRG.295.1,blat.proc3829871.chain_329	2	STRG.295.2,STRG.295.3,STRG.295.4	3
scaffold_23	alt_donor	5870395	5870396	-	asmbl_31674	none	STRG.25951.2,blat.proc3829899.chain_3066	2	STRG.25951.1,blat.proc3829899.chain_3067	2
scaffold_15	retained_exon	15321517	15321639	+	asmbl_14697	none	STRG.18911.2,Trinity_GG_10357_c0_g1_i1,blat.proc3829879.chain_3469	3	STRG.18911.1	1
scaffold_5	retained_intron	7770850	7770942	+	asmbl_44172	none	STRG.6151.1	1	STRG.6151.2	1
scaffold_20	alt_acceptor	8266419	8266420	+	asmbl_25911	none	blat.proc3829883.chain_434	1	STRG.23357.1	1
scaffold_20	spliced_intron	11438117	11438285	+	asmbl_26200	none	STRG.23635.3	1	STRG.23635.1,STRG.23635.2,blat.proc3829883.chain_776,blat.proc3829883.chain_777	4
scaffold_10	spliced_intron	13280730	13280885	+	asmbl_4862	none	STRG.12911.1	1	Trinity_GG_7120_c0_g1_i1,Trinity_GG_7120_c0_g1_i2,blat.proc3829877.chain_1486,blat.proc3829877.chain_1487	4
scaffold_4	alternate_exon	17116847	17120086	+	asmbl_43373	none	STRG.5308.1,blat.proc3829873.chain_1573,blat.proc3829873.chain_1585,blat.proc3829873.chain_1588	4	STRG.5308.4	1
scaffold_12	spliced_intron	9987993	9988214	-	asmbl_7838,asmbl_7840	none	STRG.14957.3,blat.proc3829893.chain_3344,blat.proc3829893.chain_3347	3	blat.proc3829893.chain_3345	1
scaffold_4	alternate_exon	7007500	7013761	+	asmbl_42773	none	STRG.4534.1,blat.proc3829873.chain_891	2	Trinity_GG_2510_c0_g1_i3	1
scaffold_16	spliced_intron	13922163	13922274	+	asmbl_17467	none	STRG.19777.1,blat.proc3829881.chain_588	2	Trinity_GG_10810_c0_g1_i2,blat.proc3829881.chain_587	2
scaffold_2	spliced_intron	16860835	16861118	+	asmbl_25180,asmbl_25182	none	STRG.2599.1,STRG.2599.2,blat.proc3829871.chain_2828,blat.proc3829871.chain_2831	4	blat.proc3829871.chain_2827	1
scaffold_18	spliced_intron	2834262	2835573	+	asmbl_20450	none	STRG.21133.4,blat.proc3829881.chain_1914	2	Trinity_GG_11580_c0_g1_i11,blat.proc3829881.chain_1919	2
scaffold_1	alt_acceptor	12683639	12683640	+	asmbl_2233	none	STRG.890.2	1	STRG.890.1,blat.proc3829871.chain_957	2
scaffold_11	alt_acceptor	12045724	12045725	+	asmbl_5972	none	STRG.14113.2,Trinity_GG_7741_c0_g1_i2,blat.proc3829877.chain_2531	3	STRG.14113.1,STRG.14113.3,blat.proc3829877.chain_2532	3
scaffold_11	ends_in_intron	8078067	8078067	-	asmbl_6808,asmbl_6809,asmbl_6810	none	Trinity_GG_24711_c0_g1_i13,Trinity_GG_24711_c0_g1_i19,Trinity_GG_24711_c0_g1_i7,blat.proc3829893.chain_2203,blat.proc3829893.chain_2208,blat.proc3829893.chain_2210	6	STRG.13802.2,STRG.13802.3,STRG.13802.4,STRG.13802.5,Trinity_GG_24711_c0_g1_i17,Trinity_GG_24711_c0_g1_i18,Trinity_GG_24711_c0_g1_i2,Trinity_GG_24711_c0_g1_i3,Trinity_GG_24711_c0_g1_i5,Trinity_GG_24711_c0_g1_i8,blat.proc3829893.chain_2197,blat.proc3829893.chain_2198,blat.proc3829893.chain_2200,blat.proc3829893.chain_2201,blat.proc3829893.chain_2204,blat.proc3829893.chain_2205,blat.proc3829893.chain_2206,blat.proc3829893.chain_2209,blat.proc3829893.chain_2211	19
scaffold_11	alt_donor	12905441	12905442	-	asmbl_7081,asmbl_7082	none	STRG.14165.1,STRG.14165.2	2	blat.proc3829893.chain_2638	1
scaffold_10	retained_intron	3732605	3732726	+	asmbl_4347	none	blat.proc3829877.chain_871	1	STRG.12193.1,STRG.12193.2,blat.proc3829877.chain_869,blat.proc3829877.chain_872	4
scaffold_28	alt_acceptor	1649346	1649347	-	asmbl_37323	none	STRG.29336.1	1	STRG.29336.2	1
scaffold_27	spliced_intron	638380	638592	-	asmbl_36661	none	Trinity_GG_32989_c1_g1_i5,blat.proc3829901.chain_1762	2	Trinity_GG_32989_c1_g1_i3,blat.proc3829901.chain_1760	2
scaffold_20	starts_in_intron	6280074	6280074	-	asmbl_26749	none	STRG.23211.2,blat.proc3829899.chain_247	2	STRG.23211.1,blat.proc3829899.chain_246	2
scaffold_3	alt_donor	10628826	10628827	+	asmbl_40236,asmbl_40237	none	blat.proc3829871.chain_3604,blat.proc3829871.chain_3606	2	STRG.3509.1,blat.proc3829871.chain_3608	2
scaffold_13	alt_acceptor	16250687	16250688	+	asmbl_11544	none	STRG.16665.2,blat.proc3829879.chain_1404	2	STRG.16665.1,blat.proc3829879.chain_1371,blat.proc3829879.chain_1401,blat.proc3829879.chain_1403	4
scaffold_1	alternate_exon	13884593	13885235	-	asmbl_858,asmbl_863	none	STRG.993.2,STRG.993.4,blat.proc3829887.chain_868	3	STRG.993.3,blat.proc3829887.chain_866	2
scaffold_24	alt_acceptor	8126951	8126952	+	asmbl_32419	none	blat.proc3829883.chain_3726	1	blat.proc3829883.chain_3727	1
scaffold_4	ends_in_intron	16316490	16316490	+	asmbl_43298	none	Trinity_GG_2902_c0_g1_i6,blat.proc3829873.chain_1514	2	STRG.5205.1,STRG.5205.2,STRG.5205.3,STRG.5205.4,blat.proc3829873.chain_1510,blat.proc3829873.chain_1512	6
scaffold_7	skipped_exon	4498625	4501601	-	asmbl_49681	none	blat.proc3829891.chain_1192	1	STRG.8813.1,Trinity_GG_22050_c0_g1_i4,blat.proc3829891.chain_1193	3
scaffold_1	retained_intron	9516100	9516390	-	asmbl_548,asmbl_549	none	STRG.644.3,blat.proc3829887.chain_520,blat.proc3829887.chain_521	3	STRG.644.2,blat.proc3829887.chain_519	2
scaffold_15	retained_intron	15857347	15857984	+	asmbl_14778,asmbl_14779	none	Trinity_GG_10383_c0_g1_i2,blat.proc3829879.chain_3541,blat.proc3829879.chain_3545	3	STRG.18964.2,Trinity_GG_10383_c0_g1_i8,blat.proc3829879.chain_3544	3
scaffold_5	starts_in_intron	3981748	3981748	-	asmbl_45325	none	Trinity_GG_20279_c0_g1_i3,blat.proc3829889.chain_1885	2	STRG.5864.1,blat.proc3829889.chain_1887	2
scaffold_14	alternate_exon	14387178	14387585	+	asmbl_12531	none	STRG.17683.1	1	STRG.17683.3,blat.proc3829879.chain_2303	2
scaffold_5	retained_intron	16320680	16320777	+	asmbl_44745	none	blat.proc3829873.chain_2899	1	STRG.6820.1,blat.proc3829873.chain_2898,blat.proc3829873.chain_2901	3
scaffold_14	spliced_intron	7436268	7436358	-	asmbl_13183,asmbl_13184,asmbl_13185	none	STRG.17165.1,blat.proc3829895.chain_1843,blat.proc3829895.chain_1844,blat.proc3829895.chain_1846	4	Trinity_GG_26623_c0_g1_i3,blat.proc3829895.chain_1842	2
scaffold_13	spliced_intron	6623425	6623614	+	asmbl_10943,asmbl_10945	none	Trinity_GG_8717_c0_g1_i2,Trinity_GG_8717_c0_g1_i3,blat.proc3829879.chain_545,blat.proc3829879.chain_548	4	Trinity_GG_8717_c0_g1_i1,Trinity_GG_8717_c0_g1_i4,blat.proc3829879.chain_544,blat.proc3829879.chain_546	4
scaffold_2	skipped_exon	7469822	7471000	-	asmbl_23283	none	STRG.2075.3,Trinity_GG_18127_c0_g1_i18,blat.proc3829887.chain_1893	3	STRG.2075.4,blat.proc3829887.chain_1892	2
scaffold_3	alt_acceptor	12670609	12670610	-	asmbl_39174	none	STRG.3661.1,blat.proc3829887.chain_3379	2	STRG.3661.2	1
scaffold_15	starts_in_intron	10647179	10647179	-	asmbl_15461	none	Trinity_GG_27436_c0_g1_i5	1	STRG.18545.1,STRG.18545.2,STRG.18545.3,blat.proc3829895.chain_3320,blat.proc3829895.chain_3321	5
scaffold_18	spliced_intron	9258671	9259564	-	asmbl_20094	none	STRG.21559.4	1	STRG.21559.2,Trinity_GG_29070_c0_g1_i2,blat.proc3829897.chain_2411	3
scaffold_3	alt_acceptor	17844122	17844123	+	asmbl_40667,asmbl_40668	none	STRG.4008.3,STRG.4008.4	2	STRG.4008.1,STRG.4008.2,blat.proc3829873.chain_341,blat.proc3829873.chain_342,blat.proc3829873.chain_343	5
scaffold_23	retained_exon	8102805	8102862	+	asmbl_31056	none	STRG.26106.1	1	STRG.26106.2	1
scaffold_1	spliced_intron	5734768	5734894	+	asmbl_1758,asmbl_1759,asmbl_1762	none	STRG.380.1,STRG.380.2,STRG.380.3,blat.proc3829871.chain_443,blat.proc3829871.chain_446	5	blat.proc3829871.chain_442	1
scaffold_11	retained_intron	3186863	3186973	+	asmbl_5370	none	blat.proc3829877.chain_1913	1	blat.proc3829877.chain_1912	1
scaffold_14	retained_exon	12807676	12807719	-	asmbl_13593	none	STRG.17571.2	1	STRG.17571.1,blat.proc3829895.chain_2306	2
scaffold_27	spliced_intron	3130050	3130150	+	asmbl_36150,asmbl_36152,asmbl_36153	none	STRG.28778.3,Trinity_GG_15900_c1_g1_i3,blat.proc3829885.chain_1769,blat.proc3829885.chain_1770	4	Trinity_GG_15900_c1_g1_i2,blat.proc3829885.chain_1768	2
scaffold_17	skipped_exon	7101219	7102087	+	asmbl_18026	none	STRG.20368.2,blat.proc3829881.chain_1136	2	STRG.20368.1,blat.proc3829881.chain_1135	2
scaffold_23	starts_in_intron	7279164	7279164	-	asmbl_31743	none	STRG.26034.4	1	STRG.26034.2,STRG.26034.3	2
scaffold_8	alt_acceptor	11976919	11976920	-	asmbl_53175	none	STRG.10388.3	1	STRG.10388.2,Trinity_GG_22750_c0_g1_i1,blat.proc3829891.chain_2456	3
scaffold_272	starts_in_intron	909	909	-	asmbl_37185	none	blat.proc3829901.chain_3301	1	STRG.30229.1	1
scaffold_18	skipped_exon	8400595	8401901	+	asmbl_20857	none	STRG.21503.1,blat.proc3829881.chain_2515	2	STRG.21503.4	1
scaffold_3	alt_donor	14432423	14432424	-	asmbl_39318,asmbl_39319	none	STRG.3781.1,STRG.3781.2,Trinity_GG_19066_c0_g1_i3,Trinity_GG_19066_c0_g1_i4,blat.proc3829887.chain_3506,blat.proc3829887.chain_3507	6	STRG.3781.3	1
scaffold_16	skipped_exon	5390548	5391466	-	asmbl_16267,asmbl_16268	none	STRG.19274.3,blat.proc3829897.chain_330	2	STRG.19274.1,blat.proc3829897.chain_328,blat.proc3829897.chain_329	3
scaffold_8	spliced_intron	5433842	5433940	+	asmbl_51870,asmbl_51871,asmbl_51872	none	STRG.9965.1,STRG.9965.2,blat.proc3829875.chain_2414,blat.proc3829875.chain_2415	4	blat.proc3829875.chain_2416	1
scaffold_9	spliced_intron	12270251	12270362	+	asmbl_54402	none	STRG.11539.1,blat.proc3829877.chain_276	2	blat.proc3829877.chain_278,blat.proc3829877.chain_279	2
scaffold_3	alternate_exon	6231219	6231252	-	asmbl_38881	none	STRG.3276.4	1	STRG.3276.1,STRG.3276.2,STRG.3276.3,blat.proc3829887.chain_2933,blat.proc3829887.chain_2935,blat.proc3829887.chain_2936	6
scaffold_14	alt_donor	10682417	10682418	-	asmbl_13418,asmbl_13420	none	STRG.17409.1,STRG.17409.2,blat.proc3829895.chain_2119,blat.proc3829895.chain_2120	4	STRG.17409.3	1
scaffold_1	retained_intron	10460558	10460718	-	asmbl_600	none	Trinity_GG_17402_c0_g1_i1,blat.proc3829887.chain_626	2	STRG.682.1,blat.proc3829887.chain_627	2
scaffold_1	retained_intron	5706882	5706999	+	asmbl_1750	none	blat.proc3829871.chain_433	1	STRG.369.1,blat.proc3829871.chain_429,blat.proc3829871.chain_431,blat.proc3829871.chain_432	4
scaffold_11	starts_in_intron	6070888	6070888	+	asmbl_5571,asmbl_5573	none	STRG.13658.2,STRG.13658.3,blat.proc3829877.chain_2095	3	STRG.13658.1	1
scaffold_8	alt_acceptor	9001528	9001529	+	asmbl_52030	none	STRG.10147.2,Trinity_GG_5624_c0_g1_i1,blat.proc3829875.chain_2616	3	STRG.10147.1,Trinity_GG_5624_c0_g1_i3,blat.proc3829875.chain_2618	3
scaffold_1	starts_in_intron	11098762	11098762	+	asmbl_2050	none	blat.proc3829871.chain_780	1	STRG.729.1,STRG.729.2,blat.proc3829871.chain_781	3
scaffold_16	alternate_exon	12019116	12019210	-	asmbl_16560	none	blat.proc3829897.chain_674	1	STRG.19716.1,blat.proc3829897.chain_673	2
scaffold_20	retained_intron	11950865	11950950	-	asmbl_27135	none	blat.proc3829899.chain_605	1	blat.proc3829899.chain_603,blat.proc3829899.chain_606	2
scaffold_14	alt_donor	10692528	10692529	+	asmbl_12323	none	STRG.17404.3	1	STRG.17404.2,Trinity_GG_9574_c0_g1_i1,blat.proc3829879.chain_2114	3
scaffold_1	alt_acceptor	2789628	2789629	+	asmbl_1548,asmbl_1551	none	STRG.177.2,blat.proc3829871.chain_204	2	STRG.177.1,blat.proc3829871.chain_205	2
scaffold_16	alternate_exon	8027986	8028273	-	asmbl_16393	none	Trinity_GG_27922_c0_g2_i1,blat.proc3829897.chain_474	2	blat.proc3829897.chain_473	1
scaffold_24	alt_acceptor	4836831	4836832	+	asmbl_32218	none	STRG.26593.1,blat.proc3829883.chain_3440	2	blat.proc3829883.chain_3441	1
scaffold_3	starts_in_intron	10631398	10631398	+	asmbl_40242	none	Trinity_GG_1945_c1_g1_i1	1	STRG.3509.1,STRG.3509.2,STRG.3509.3,blat.proc3829871.chain_3609	4
scaffold_2	spliced_intron	5202056	5202363	+	asmbl_24422,asmbl_24423,asmbl_24425,asmbl_24426	none	STRG.1940.1,STRG.1940.2,Trinity_GG_1078_c0_g1_i1,Trinity_GG_1078_c0_g1_i2,Trinity_GG_1078_c0_g1_i3,Trinity_GG_1078_c0_g1_i5,blat.proc3829871.chain_1968,blat.proc3829871.chain_1969,blat.proc3829871.chain_1970,blat.proc3829871.chain_1971	10	STRG.1940.3,blat.proc3829871.chain_1967	2
scaffold_14	retained_intron	6582351	6582780	+	asmbl_12065	none	STRG.17092.1,blat.proc3829879.chain_1797	2	STRG.17092.2,blat.proc3829879.chain_1796	2
scaffold_6	alt_donor	5937921	5937922	-	asmbl_48379	none	STRG.7540.2	1	STRG.7540.1	1
scaffold_16	spliced_intron	327833	327983	-	asmbl_16025,asmbl_16027	none	STRG.19019.1,blat.proc3829897.chain_59,blat.proc3829897.chain_60	3	STRG.19019.2,STRG.19019.3,blat.proc3829897.chain_61,blat.proc3829897.chain_62	4
scaffold_4	alt_acceptor	3861736	3861737	+	asmbl_42531	none	STRG.4292.2	1	STRG.4292.1,blat.proc3829873.chain_673	2
scaffold_7	ends_in_intron	15565194	15565194	-	asmbl_50202,asmbl_50203	none	blat.proc3829891.chain_1730,blat.proc3829891.chain_1731	2	STRG.9545.1	1
scaffold_15	spliced_intron	2557700	2557737	-	asmbl_15026	none	STRG.18024.2	1	STRG.18024.1	1
scaffold_14	starts_in_intron	1100690	1100690	+	asmbl_11778,asmbl_11779	none	Trinity_GG_9222_c0_g1_i2,Trinity_GG_9222_c0_g1_i6,blat.proc3829879.chain_1480,blat.proc3829879.chain_1482	4	STRG.16756.1,STRG.16756.2,STRG.16756.3,blat.proc3829879.chain_1478,blat.proc3829879.chain_1479,blat.proc3829879.chain_1481	6
scaffold_19	retained_exon	6257255	6257617	+	asmbl_22206	none	STRG.22144.1,blat.proc3829881.chain_3019	2	blat.proc3829881.chain_3020	1
scaffold_11	alt_donor	4716018	4716019	+	asmbl_5463,asmbl_5465	none	STRG.13545.1,STRG.13545.2,blat.proc3829877.chain_2043	3	STRG.13545.3	1
scaffold_26	alt_acceptor	1942363	1942364	-	asmbl_34702	none	STRG.27916.1	1	STRG.27916.2	1
scaffold_4	spliced_intron	17580414	17580544	+	asmbl_43401,asmbl_43404,asmbl_43405	none	STRG.5347.1,STRG.5347.3,STRG.5347.5	3	STRG.5347.4	1
scaffold_1	retained_exon	8633609	8633664	-	asmbl_467	none	STRG.568.2,blat.proc3829887.chain_449	2	STRG.568.1,blat.proc3829887.chain_447,blat.proc3829887.chain_448	3
scaffold_1	starts_in_intron	12934170	12934170	-	asmbl_787	none	Trinity_GG_17492_c0_g1_i2,blat.proc3829887.chain_809	2	STRG.923.1,STRG.923.2,Trinity_GG_17492_c0_g1_i1,blat.proc3829887.chain_808	4
scaffold_12	alt_acceptor	135949	135950	+	asmbl_8402	none	blat.proc3829877.chain_2914	1	STRG.14421.2	1
scaffold_9	skipped_exon	17742976	17743198	+	asmbl_54620	none	STRG.11853.2,blat.proc3829877.chain_522	2	STRG.11853.1,STRG.11853.3,blat.proc3829877.chain_521,blat.proc3829877.chain_525,blat.proc3829877.chain_526,blat.proc3829877.chain_527	6
scaffold_9	alt_donor	13297187	13297188	-	asmbl_55382,asmbl_55387	none	STRG.11625.3,STRG.11625.4	2	STRG.11625.1,STRG.11625.2,STRG.11625.5,STRG.11625.6,STRG.11625.7	5
scaffold_10	retained_intron	8917449	8918183	+	asmbl_4618,asmbl_4619	none	STRG.12631.1,blat.proc3829877.chain_1155,blat.proc3829877.chain_1156	3	STRG.12631.2,blat.proc3829877.chain_1154	2
scaffold_12	retained_intron	5140448	5141695	-	asmbl_7617	none	STRG.14677.1,Trinity_GG_25205_c0_g1_i1,blat.proc3829893.chain_3085,blat.proc3829893.chain_3087	4	blat.proc3829893.chain_3084	1
scaffold_10	alt_acceptor	3739165	3739166	+	asmbl_4350	none	STRG.12194.2	1	STRG.12194.1,blat.proc3829877.chain_875	2
scaffold_19	alt_donor	856360	856361	+	asmbl_22022	none	STRG.21868.1	1	STRG.21868.2,Trinity_GG_12075_c1_g1_i1,blat.proc3829881.chain_2793,blat.proc3829881.chain_2794,blat.proc3829881.chain_2795	5
scaffold_20	spliced_intron	1490437	1490472	+	asmbl_25571	none	STRG.22855.2	1	STRG.22855.1,STRG.22855.3,STRG.22855.5,Trinity_GG_12610_c1_g1_i3,Trinity_GG_12610_c1_g1_i4,blat.proc3829883.chain_15,blat.proc3829883.chain_16,blat.proc3829883.chain_17	8
scaffold_24	alternate_exon	3437213	3437485	-	asmbl_32822	none	STRG.26531.4	1	STRG.26531.3,blat.proc3829899.chain_3590	2
scaffold_11	alt_donor	8192908	8192909	-	asmbl_6833	none	STRG.13814.2,Trinity_GG_24748_c0_g1_i1,blat.proc3829893.chain_2275	3	STRG.13814.1,Trinity_GG_24748_c0_g1_i3,blat.proc3829893.chain_2274	3
scaffold_13	retained_intron	16138003	16138117	+	asmbl_11532	none	STRG.16640.3,Trinity_GG_9180_c0_g1_i1	2	STRG.16640.2	1
scaffold_19	starts_in_intron	10072074	10072074	+	asmbl_22419	none	Trinity_GG_12368_c0_g1_i1,blat.proc3829881.chain_3301	2	STRG.22381.1,blat.proc3829881.chain_3298,blat.proc3829881.chain_3299	3
scaffold_21	alt_donor	4969907	4969908	+	asmbl_28568	none	STRG.24026.2	1	STRG.24026.1,blat.proc3829883.chain_1182	2
scaffold_11	spliced_intron	14119106	14119141	-	asmbl_7133,asmbl_7134	none	blat.proc3829893.chain_2611,blat.proc3829893.chain_2613	2	STRG.14222.1	1
scaffold_2	retained_intron	44017	44055	-	asmbl_22813	none	STRG.1499.1	1	STRG.1499.2	1
scaffold_19	starts_in_intron	6206167	6206167	+	asmbl_22199	none	Trinity_GG_12242_c0_g1_i3,blat.proc3829881.chain_3096	2	STRG.22140.2,blat.proc3829881.chain_3095	2
scaffold_2	alt_acceptor	4331241	4331242	-	asmbl_23097	none	STRG.1860.2,blat.proc3829887.chain_1730	2	STRG.1860.1,blat.proc3829887.chain_1729	2
scaffold_14	alt_donor	1070202	1070203	+	asmbl_11763	none	Trinity_GG_9205_c0_g1_i2,blat.proc3829879.chain_1438	2	STRG.16754.5	1
scaffold_16	alternate_exon	6147056	6147641	+	asmbl_17077	none	STRG.19342.3	1	STRG.19342.1,blat.proc3829881.chain_208,blat.proc3829881.chain_209,blat.proc3829881.chain_212,blat.proc3829881.chain_214	5
scaffold_6	spliced_intron	15760487	15760603	-	asmbl_49020,asmbl_49021	none	STRG.8311.1,STRG.8311.2	2	Trinity_GG_21687_c0_g1_i5,blat.proc3829891.chain_537	2
scaffold_3	spliced_intron	13463114	13463211	+	asmbl_40399,asmbl_40400	none	STRG.3701.1,blat.proc3829873.chain_31,blat.proc3829873.chain_32	3	blat.proc3829873.chain_33	1
scaffold_8	ends_in_intron	17764069	17764069	+	asmbl_52490	none	Trinity_GG_5903_c0_g1_i5,blat.proc3829875.chain_3116	2	STRG.10683.1,STRG.10683.2,Trinity_GG_5903_c0_g1_i2,blat.proc3829875.chain_3115	4
scaffold_13	spliced_intron	3430642	3430833	+	asmbl_10675	none	blat.proc3829879.chain_287	1	STRG.15637.1,Trinity_GG_8566_c0_g1_i5,blat.proc3829879.chain_288,blat.proc3829879.chain_289	4
scaffold_16	spliced_intron	14553177	14553355	+	asmbl_17488,asmbl_17489,asmbl_17491	none	STRG.19828.1,STRG.19828.2,Trinity_GG_10868_c0_g1_i1,Trinity_GG_10868_c0_g1_i2,Trinity_GG_10868_c0_g1_i4,blat.proc3829881.chain_687,blat.proc3829881.chain_688,blat.proc3829881.chain_690	8	STRG.19828.3,Trinity_GG_10868_c0_g1_i3,blat.proc3829881.chain_689	3
scaffold_7	alt_acceptor	1235756	1235757	+	asmbl_50485	none	STRG.8627.8	1	STRG.8627.3,STRG.8627.7,STRG.8627.9	3
scaffold_9	spliced_intron	5757730	5758224	-	asmbl_54990,asmbl_54991	none	STRG.11135.1,STRG.11135.3,blat.proc3829891.chain_3237	3	STRG.11135.4,Trinity_GG_23161_c0_g1_i3,Trinity_GG_23161_c0_g1_i4,Trinity_GG_23161_c0_g1_i5,blat.proc3829891.chain_3240,blat.proc3829891.chain_3241	6
scaffold_24	retained_intron	8711438	8711587	-	asmbl_33079	none	STRG.26857.2	1	STRG.26857.1,blat.proc3829901.chain_152	2
scaffold_13	ends_in_intron	15362667	15362667	+	asmbl_11478	none	Trinity_GG_9120_c0_g2_i1,blat.proc3829879.chain_1301	2	STRG.16566.1,Trinity_GG_9120_c0_g1_i1,Trinity_GG_9120_c0_g1_i3,Trinity_GG_9120_c0_g1_i4,blat.proc3829879.chain_1298,blat.proc3829879.chain_1299,blat.proc3829879.chain_1300	7
scaffold_1	starts_in_intron	9896297	9896297	-	asmbl_570	none	blat.proc3829887.chain_558	1	STRG.661.1,STRG.661.2,blat.proc3829887.chain_557,blat.proc3829887.chain_559	4
scaffold_26	alternate_exon	3335159	3335267	-	asmbl_34756	none	STRG.27996.1,blat.proc3829901.chain_1188	2	STRG.27996.2	1
scaffold_13	alternate_exon	5454392	5456415	+	asmbl_10830,asmbl_10833	none	STRG.15828.1,blat.proc3829879.chain_519,blat.proc3829879.chain_520	3	STRG.15828.2,blat.proc3829879.chain_518,blat.proc3829879.chain_521	3
scaffold_13	spliced_intron	5208212	5208652	+	asmbl_10813	none	STRG.15811.3	1	STRG.15811.2,Trinity_GG_8694_c0_g1_i2,blat.proc3829879.chain_503	3
scaffold_14	starts_in_intron	6938792	6938792	+	asmbl_12099	none	blat.proc3829879.chain_1866	1	STRG.17121.1,blat.proc3829879.chain_1865,blat.proc3829879.chain_1867	3
scaffold_1	alternate_exon	11800709	11801137	-	asmbl_680	none	blat.proc3829887.chain_691	1	STRG.794.1	1
scaffold_1	skipped_exon	7283528	7284758	-	asmbl_432	none	STRG.525.1,blat.proc3829887.chain_352	2	STRG.525.2,blat.proc3829887.chain_351	2
scaffold_14	retained_exon	2247331	2247578	-	asmbl_12903,asmbl_12905	none	STRG.16817.1,Trinity_GG_26430_c0_g1_i1,Trinity_GG_26430_c0_g1_i2,blat.proc3829895.chain_1513,blat.proc3829895.chain_1514	5	STRG.16817.2,Trinity_GG_26430_c0_g1_i3,blat.proc3829895.chain_1512	3
scaffold_10	alternate_exon	9543894	9551172	+	asmbl_4680	none	STRG.12692.1	1	STRG.12692.4,STRG.12692.5	2
scaffold_7	spliced_intron	13953437	13953519	+	asmbl_51271,asmbl_51272	none	STRG.9478.1,Trinity_GG_5270_c0_g1_i2,blat.proc3829875.chain_1947	3	STRG.9478.2,Trinity_GG_5270_c0_g1_i3,Trinity_GG_5270_c0_g1_i5,blat.proc3829875.chain_1946,blat.proc3829875.chain_1949	5
scaffold_26	alternate_exon	6348782	6350864	-	asmbl_34957	none	STRG.28315.4	1	Trinity_GG_32794_c0_g1_i3,blat.proc3829901.chain_1405	2
scaffold_19	alt_donor	96338	96339	-	asmbl_21185	none	STRG.21815.2,Trinity_GG_29184_c0_g1_i1,blat.proc3829897.chain_2590	3	STRG.21815.1,Trinity_GG_29184_c0_g1_i2,blat.proc3829897.chain_2589	3
scaffold_5	alt_acceptor	8538828	8538829	-	asmbl_45593,asmbl_45596	none	STRG.6191.3,blat.proc3829889.chain_2253	2	STRG.6191.1,STRG.6191.4,blat.proc3829889.chain_2246,blat.proc3829889.chain_2247,blat.proc3829889.chain_2248,blat.proc3829889.chain_2250	6
scaffold_2	retained_exon	12352617	12352681	+	asmbl_24821	none	STRG.2292.2,blat.proc3829871.chain_2393	2	STRG.2292.1	1
scaffold_13	alt_donor	4342947	4342948	+	asmbl_10763	none	STRG.15747.1,blat.proc3829879.chain_401	2	STRG.15747.2	1
scaffold_7	retained_exon	4392465	4392468	+	asmbl_50611,asmbl_50612	none	blat.proc3829875.chain_1130,blat.proc3829875.chain_1131	2	Trinity_GG_4787_c0_g1_i1,Trinity_GG_4787_c0_g1_i2	2
scaffold_17	retained_intron	2566428	2566633	+	asmbl_17793	none	Trinity_GG_10964_c0_g1_i5,blat.proc3829881.chain_841	2	STRG.20039.1,STRG.20039.2,blat.proc3829881.chain_840	3
scaffold_13	spliced_intron	2334729	2334862	+	asmbl_10569	none	STRG.15543.2,blat.proc3829879.chain_174	2	STRG.15543.5,Trinity_GG_8511_c1_g1_i3,blat.proc3829879.chain_166	3
scaffold_5	alternate_exon	990274	990314	-	asmbl_45201	none	STRG.5644.4	1	STRG.5644.1,STRG.5644.2,STRG.5644.3,blat.proc3829889.chain_1764,blat.proc3829889.chain_1765	5
scaffold_27	starts_in_intron	2536591	2536591	+	asmbl_36048	none	blat.proc3829885.chain_1762	1	STRG.28704.1,blat.proc3829885.chain_1763	2
scaffold_16	retained_intron	205536	205755	+	asmbl_16791,asmbl_16793	none	STRG.18998.1,Trinity_GG_10416_c0_g1_i1,Trinity_GG_10416_c0_g1_i3,blat.proc3829879.chain_3611,blat.proc3829879.chain_3612	5	Trinity_GG_10416_c0_g1_i2,blat.proc3829879.chain_3610	2
scaffold_21	alternate_exon	3169441	3169834	+	asmbl_28480	none	STRG.23945.6,blat.proc3829883.chain_1048	2	blat.proc3829883.chain_1049,blat.proc3829883.chain_1055	2
scaffold_23	alt_acceptor	5563906	5563907	+	asmbl_30871	none	STRG.25907.1,blat.proc3829883.chain_2787	2	STRG.25907.2	1
scaffold_43	retained_intron	782	922	-	asmbl_43670	none	STRG.30025.2	1	STRG.30025.3	1
scaffold_8	skipped_exon	4870929	4871742	+	asmbl_51855,asmbl_51856,asmbl_51859	none	STRG.9943.1,STRG.9943.4,blat.proc3829875.chain_2421,blat.proc3829875.chain_2423,blat.proc3829875.chain_2425	5	STRG.9943.2,STRG.9943.3,blat.proc3829875.chain_2420,blat.proc3829875.chain_2422	4
scaffold_15	alternate_exon	16342098	16342282	-	asmbl_15843	none	STRG.18978.2,blat.proc3829895.chain_3740	2	STRG.18978.1,blat.proc3829895.chain_3741	2
scaffold_21	spliced_intron	3192371	3192392	+	asmbl_28499	none	STRG.23934.1	1	blat.proc3829883.chain_1040,blat.proc3829883.chain_1041,blat.proc3829883.chain_1042	3
scaffold_8	alt_acceptor	4194632	4194633	-	asmbl_52750	none	blat.proc3829891.chain_2037	1	STRG.9887.2	1
scaffold_4	alt_donor	3955927	3955928	-	asmbl_41212	none	STRG.4301.1,blat.proc3829889.chain_402	2	STRG.4301.2,blat.proc3829889.chain_403	2
scaffold_24	starts_in_intron	9063033	9063033	+	asmbl_32493	none	STRG.26913.2	1	STRG.26913.1,blat.proc3829885.chain_13,blat.proc3829885.chain_14	3
scaffold_25	skipped_exon	3630560	3632886	+	asmbl_33434	none	STRG.27294.3	1	STRG.27294.1,STRG.27294.2,blat.proc3829885.chain_341,blat.proc3829885.chain_342,blat.proc3829885.chain_343	5
scaffold_13	retained_exon	1380178	1380337	-	asmbl_9370	none	STRG.15491.1	1	blat.proc3829895.chain_207,blat.proc3829895.chain_209	2
scaffold_4	skipped_exon	15007037	15008243	+	asmbl_43256	none	STRG.5111.2,blat.proc3829873.chain_1447	2	STRG.5111.1,blat.proc3829873.chain_1448	2
scaffold_22	retained_exon	9721617	9721808	+	asmbl_29601	none	STRG.25292.4	1	STRG.25292.3	1
scaffold_3	retained_intron	5529821	5529991	-	asmbl_38806	none	blat.proc3829887.chain_2917	1	STRG.3223.1	1
scaffold_9	alt_acceptor	10062776	10062777	+	asmbl_54260,asmbl_54261	none	STRG.11355.1,STRG.11355.2,Trinity_GG_6304_c0_g1_i1,Trinity_GG_6304_c0_g1_i3,blat.proc3829877.chain_55,blat.proc3829877.chain_56	6	STRG.11355.3	1
scaffold_13	spliced_intron	7719414	7719504	-	asmbl_9863,asmbl_9864	none	STRG.16043.1,STRG.16043.2,Trinity_GG_26001_c0_g1_i3,blat.proc3829895.chain_746	4	blat.proc3829895.chain_745	1
scaffold_12	retained_intron	14123203	14123414	-	asmbl_8117,asmbl_8118,asmbl_8119,asmbl_8121	none	STRG.15232.2,Trinity_GG_25557_c0_g1_i2,blat.proc3829893.chain_3706,blat.proc3829893.chain_3707	4	STRG.15232.1,blat.proc3829893.chain_3709	2
scaffold_9	ends_in_intron	9846055	9846055	+	asmbl_54246	none	blat.proc3829877.chain_126	1	STRG.11342.1,blat.proc3829877.chain_127	2
scaffold_13	retained_exon	6396403	6396467	+	asmbl_10908,asmbl_10915	none	STRG.15914.3,STRG.15914.4,Trinity_GG_8718_c0_g1_i9,blat.proc3829879.chain_552	4	STRG.15914.1,STRG.15914.5,Trinity_GG_8718_c0_g1_i1,blat.proc3829879.chain_557	4
scaffold_8	alternate_exon	8180689	8183484	+	asmbl_51988,asmbl_51989,asmbl_51990,asmbl_51991	none	STRG.10093.1,STRG.10093.2,STRG.10093.3,STRG.10093.4,Trinity_GG_5598_c3_g1_i1,blat.proc3829875.chain_2575,blat.proc3829875.chain_2578	7	blat.proc3829875.chain_2574	1
scaffold_27	alt_acceptor	6258606	6258607	+	asmbl_36349,asmbl_36352	none	STRG.28995.2,blat.proc3829885.chain_2096,blat.proc3829885.chain_2097	3	STRG.28995.3,blat.proc3829885.chain_2095	2
scaffold_2	alt_donor	13079501	13079502	-	asmbl_23505,asmbl_23506,asmbl_23509	none	STRG.2340.3,blat.proc3829887.chain_2256,blat.proc3829887.chain_2257	3	STRG.2340.1,STRG.2340.2,blat.proc3829887.chain_2255,blat.proc3829887.chain_2258,blat.proc3829887.chain_2259,blat.proc3829887.chain_2260,blat.proc3829887.chain_2262	7
scaffold_300	spliced_intron	1280	1585	+	asmbl_40849	none	STRG.30247.1,blat.proc3829885.chain_3278	2	STRG.30247.3,blat.proc3829885.chain_3279	2
scaffold_1	starts_in_intron	1563905	1563905	+	asmbl_1490,asmbl_1491	none	STRG.100.3,blat.proc3829871.chain_137	2	STRG.100.1,STRG.100.2,blat.proc3829871.chain_136	3
scaffold_28	starts_in_intron	5232900	5232900	-	asmbl_37586	none	Trinity_GG_33579_c0_g1_i11,blat.proc3829901.chain_2681	2	STRG.29652.1,STRG.29652.2,blat.proc3829901.chain_2678,blat.proc3829901.chain_2680,blat.proc3829901.chain_2685,blat.proc3829901.chain_2687	6
scaffold_8	alt_donor	11167529	11167530	-	asmbl_53133	none	STRG.10321.2,blat.proc3829891.chain_2466	2	STRG.10321.1,blat.proc3829891.chain_2465	2
scaffold_5	alt_donor	4855594	4855595	-	asmbl_45405	none	blat.proc3829889.chain_2017	1	STRG.5937.1,STRG.5937.2,blat.proc3829889.chain_2016,blat.proc3829889.chain_2019	4
scaffold_3	alt_acceptor	13989049	13989050	+	asmbl_40435,asmbl_40437	none	STRG.3741.3,STRG.3741.4,Trinity_GG_2070_c0_g1_i1,blat.proc3829873.chain_88	4	STRG.3741.1,STRG.3741.5,Trinity_GG_2070_c0_g1_i2,blat.proc3829873.chain_86	4
scaffold_11	alt_acceptor	6712070	6712071	-	asmbl_6715	none	STRG.13703.2	1	STRG.13703.1,STRG.13703.4,blat.proc3829893.chain_2180,blat.proc3829893.chain_2182	4
scaffold_25	alt_acceptor	4818561	4818562	+	asmbl_33533,asmbl_33535	none	STRG.27398.3,Trinity_GG_15069_c0_g1_i1,Trinity_GG_15069_c0_g1_i2,blat.proc3829885.chain_359,blat.proc3829885.chain_360	5	STRG.27398.1,STRG.27398.2	2
scaffold_26	ends_in_intron	2962587	2962587	-	asmbl_34737	none	Trinity_GG_32695_c1_g1_i4,blat.proc3829901.chain_1231	2	STRG.27973.1,STRG.27973.3,blat.proc3829901.chain_1232,blat.proc3829901.chain_1234,blat.proc3829901.chain_1235	5
scaffold_2174	spliced_intron	1221	1252	-	asmbl_29073	none	STRG.30694.1	1	STRG.30694.2	1
scaffold_1	alt_donor	11096247	11096248	+	asmbl_2046	none	STRG.726.2	1	Trinity_GG_451_c0_g1_i4	1
scaffold_11	alt_acceptor	5258853	5258854	+	asmbl_5521	none	STRG.13602.1	1	STRG.13602.5	1
scaffold_2	starts_in_intron	4583738	4583738	+	asmbl_24380	none	Trinity_GG_1044_c0_g3_i1,blat.proc3829871.chain_1913	2	STRG.1884.1,STRG.1884.2,STRG.1884.3	3
scaffold_14	spliced_intron	15753825	15753858	-	asmbl_13729	none	STRG.17800.2	1	STRG.17800.1,Trinity_GG_26971_c0_g1_i1,blat.proc3829895.chain_2452	3
scaffold_20	ends_in_intron	11671568	11671568	+	asmbl_26237	none	blat.proc3829883.chain_801	1	Trinity_GG_13100_c0_g1_i2,Trinity_GG_13100_c0_g1_i5,blat.proc3829883.chain_800,blat.proc3829883.chain_802	4
scaffold_15	alt_acceptor	6087212	6087213	+	asmbl_14177	none	STRG.18260.1,blat.proc3829879.chain_2900	2	STRG.18260.2	1
scaffold_14	retained_exon	14148818	14148881	+	asmbl_12512	none	STRG.17676.1	1	STRG.17676.3,STRG.17676.5	2
scaffold_5	alternate_exon	5050644	5051251	+	asmbl_44000,asmbl_44002,asmbl_44003	none	STRG.5949.2,STRG.5949.3,STRG.5949.4,blat.proc3829873.chain_2144	4	Trinity_GG_3276_c0_g2_i4,blat.proc3829873.chain_2142	2
scaffold_13	retained_intron	3352875	3353012	-	asmbl_9496	none	blat.proc3829895.chain_389	1	STRG.15631.1,blat.proc3829895.chain_390	2
scaffold_6	alt_acceptor	7172548	7172549	+	asmbl_46989,asmbl_46990,asmbl_46991,asmbl_46992	none	STRG.7621.1,STRG.7621.2,STRG.7621.3,STRG.7621.4	4	blat.proc3829873.chain_3739	1
scaffold_18	starts_in_intron	8914249	8914249	-	asmbl_20079	none	blat.proc3829897.chain_2395	1	STRG.21550.2,STRG.21550.4,blat.proc3829897.chain_2394,blat.proc3829897.chain_2398	4
scaffold_19	starts_in_intron	11490341	11490341	+	asmbl_22507	none	Trinity_GG_12429_c0_g1_i2,blat.proc3829881.chain_3409	2	STRG.22478.1,Trinity_GG_12429_c0_g1_i4,blat.proc3829881.chain_3407	3
scaffold_18	spliced_intron	5988273	5988742	+	asmbl_20674,asmbl_20675	none	blat.proc3829881.chain_2205,blat.proc3829881.chain_2207,blat.proc3829881.chain_2208,blat.proc3829881.chain_2212	4	blat.proc3829881.chain_2206,blat.proc3829881.chain_2209,blat.proc3829881.chain_2211	3
scaffold_13	spliced_intron	8103489	8103578	+	asmbl_11084	none	STRG.16073.1,blat.proc3829879.chain_815	2	blat.proc3829879.chain_814	1
scaffold_27	retained_exon	627096	627258	-	asmbl_36654	none	STRG.28563.1,blat.proc3829901.chain_1752	2	STRG.28563.3,blat.proc3829901.chain_1754	2
scaffold_10	starts_in_intron	12672252	12672252	+	asmbl_4809	none	STRG.12847.2,blat.proc3829877.chain_1436,blat.proc3829877.chain_1438	3	STRG.12847.1,blat.proc3829877.chain_1437,blat.proc3829877.chain_1439	3
scaffold_13	starts_in_intron	522485	522485	+	asmbl_10455	none	Trinity_GG_8491_c0_g1_i10,blat.proc3829879.chain_109	2	STRG.15434.1,STRG.15434.2,STRG.15434.3,STRG.15434.4,STRG.15434.5,Trinity_GG_8491_c0_g1_i1,Trinity_GG_8491_c0_g1_i4,blat.proc3829879.chain_110,blat.proc3829879.chain_111,blat.proc3829879.chain_112,blat.proc3829879.chain_114,blat.proc3829879.chain_115,blat.proc3829879.chain_116	13
scaffold_17	alt_acceptor	8158243	8158244	+	asmbl_18067,asmbl_18069	none	STRG.20421.1,blat.proc3829881.chain_1184,blat.proc3829881.chain_1185	3	STRG.20421.2	1
scaffold_7	alt_donor	7186396	7186397	+	asmbl_50790	none	STRG.8964.3	1	STRG.8964.1,STRG.8964.2,blat.proc3829875.chain_1425,blat.proc3829875.chain_1426	4
scaffold_19	retained_exon	3684358	3684556	+	asmbl_22133,asmbl_22134,asmbl_22135,asmbl_22138	none	STRG.22046.2,STRG.22046.3,STRG.22046.4,blat.proc3829881.chain_3004	4	STRG.22046.1,STRG.22046.6,STRG.22046.7	3
scaffold_2	retained_intron	14462273	14462391	-	asmbl_23618	none	blat.proc3829887.chain_2312	1	STRG.2443.1,blat.proc3829887.chain_2313	2
scaffold_5	retained_exon	11992076	11993127	-	asmbl_45816	none	STRG.6447.3	1	STRG.6447.1,blat.proc3829889.chain_2521	2
scaffold_12	alternate_exon	11328669	11328759	-	asmbl_7929	none	STRG.15055.2	1	STRG.15055.1	1
scaffold_10	ends_in_intron	2680107	2680107	+	asmbl_4275	none	blat.proc3829877.chain_782	1	STRG.12078.1,blat.proc3829877.chain_780	2
scaffold_6	alternate_exon	10916923	10917207	+	asmbl_47248	none	Trinity_GG_4305_c0_g1_i6,blat.proc3829875.chain_228	2	STRG.7900.3,Trinity_GG_4305_c0_g1_i1,blat.proc3829875.chain_230	3
scaffold_11	alt_acceptor	13254292	13254293	-	asmbl_7106	none	blat.proc3829893.chain_2644	1	STRG.14183.2,blat.proc3829893.chain_2645	2
scaffold_12	skipped_exon	4952039	4953568	-	asmbl_7599,asmbl_7600	none	STRG.14653.2,blat.proc3829893.chain_3045	2	STRG.14653.1,blat.proc3829893.chain_3046	2
scaffold_7	alt_acceptor	15551729	15551730	-	asmbl_50193	none	STRG.9546.2,STRG.9546.3	2	STRG.9546.1	1
scaffold_4	alternate_exon	14036857	14036886	+	asmbl_43169	none	STRG.5023.2	1	STRG.5023.1,blat.proc3829873.chain_1362	2
scaffold_16	alt_donor	7218801	7218802	-	asmbl_16344,asmbl_16345,asmbl_16347,asmbl_16355	none	STRG.19382.1,STRG.19382.3,STRG.19382.4,STRG.19382.7	4	STRG.19382.2,STRG.19382.5,STRG.19382.6	3
scaffold_17	spliced_intron	1292002	1292436	-	asmbl_18724	none	STRG.19952.4,blat.proc3829897.chain_843	2	STRG.19952.5,blat.proc3829897.chain_841	2
scaffold_1	alt_donor	20306324	20306325	-	asmbl_1176	none	STRG.1379.2	1	STRG.1379.1	1
scaffold_20	alt_acceptor	9656253	9656254	+	asmbl_26035	none	STRG.23495.1	1	STRG.23495.2	1
scaffold_85	alt_acceptor	1320	1321	-	asmbl_53691	none	blat.proc3829901.chain_3205	1	STRG.30107.1,STRG.30107.2,blat.proc3829901.chain_3204	3
scaffold_24	alternate_exon	10484852	10484876	+	asmbl_32573	none	STRG.27000.5	1	STRG.27000.1,STRG.27000.2,Trinity_GG_14920_c0_g1_i2,Trinity_GG_14920_c0_g1_i5,Trinity_GG_14920_c0_g1_i6,Trinity_GG_14920_c0_g1_i7,blat.proc3829885.chain_126,blat.proc3829885.chain_127,blat.proc3829885.chain_128,blat.proc3829885.chain_130	10
scaffold_1	starts_in_intron	12891292	12891292	-	asmbl_784	none	blat.proc3829887.chain_812	1	STRG.918.1,blat.proc3829887.chain_813	2
scaffold_21	starts_in_intron	1175016	1175016	-	asmbl_27412,asmbl_27415	none	STRG.23778.1,STRG.23778.3,Trinity_GG_30262_c0_g1_i2,blat.proc3829899.chain_856	4	STRG.23778.2,Trinity_GG_30262_c0_g1_i3,blat.proc3829899.chain_857	3
scaffold_3	retained_intron	18947965	18948081	+	asmbl_40713	none	blat.proc3829873.chain_456	1	STRG.4064.1,blat.proc3829873.chain_457	2
scaffold_4	alt_donor	16665803	16665804	+	asmbl_43333	none	STRG.5253.2,blat.proc3829873.chain_1524	2	STRG.5253.1,blat.proc3829873.chain_1525	2
scaffold_7	alt_donor	12404050	12404051	-	asmbl_50022	none	STRG.9326.1,blat.proc3829891.chain_1496	2	STRG.9326.2,blat.proc3829891.chain_1497	2
scaffold_14	retained_intron	6283532	6283649	+	asmbl_12036,asmbl_12037,asmbl_12038,asmbl_12040	none	STRG.17063.3,STRG.17063.4,STRG.17063.5,STRG.17063.6,blat.proc3829879.chain_1743	5	STRG.17063.1,STRG.17063.2,STRG.17063.7,blat.proc3829879.chain_1739,blat.proc3829879.chain_1740,blat.proc3829879.chain_1742,blat.proc3829879.chain_1744,blat.proc3829879.chain_1746	8
scaffold_12	retained_intron	4204687	4205332	+	asmbl_8546	none	STRG.14587.1,Trinity_GG_8068_c0_g1_i2,blat.proc3829877.chain_3111	3	STRG.14587.3	1
scaffold_21	spliced_intron	8278548	8278631	+	asmbl_28820	none	STRG.24353.2	1	STRG.24353.4	1
scaffold_8	retained_intron	9870650	9870745	+	asmbl_52108	none	blat.proc3829875.chain_2695	1	STRG.10225.5,STRG.10225.6	2
scaffold_28	spliced_intron	7528910	7529100	+	asmbl_38383,asmbl_38386	none	STRG.29810.1,blat.proc3829885.chain_2865,blat.proc3829885.chain_2867	3	blat.proc3829885.chain_2866	1
scaffold_28	alternate_exon	5232621	5237689	-	asmbl_37592	none	blat.proc3829901.chain_2678	1	Trinity_GG_33579_c0_g1_i3,blat.proc3829901.chain_2686	2
scaffold_1	retained_exon	3503419	3503774	-	asmbl_152,asmbl_154,asmbl_158	none	STRG.217.2,blat.proc3829887.chain_119,blat.proc3829887.chain_123	3	STRG.217.1,STRG.217.3,blat.proc3829887.chain_114,blat.proc3829887.chain_116,blat.proc3829887.chain_117,blat.proc3829887.chain_118,blat.proc3829887.chain_120,blat.proc3829887.chain_121,blat.proc3829887.chain_122,blat.proc3829887.chain_124,blat.proc3829887.chain_125	11
scaffold_9	ends_in_intron	9850554	9850554	+	asmbl_54251	none	Trinity_GG_6307_c0_g1_i1	1	STRG.11344.1,STRG.11344.2,blat.proc3829877.chain_64,blat.proc3829877.chain_67	4
scaffold_27	spliced_intron	4961885	4961915	+	asmbl_36291	none	STRG.28911.1	1	Trinity_GG_16012_c0_g1_i1	1
scaffold_8	starts_in_intron	8270483	8270483	-	asmbl_52940	none	blat.proc3829891.chain_2273	1	STRG.10099.1,STRG.10099.2,blat.proc3829891.chain_2270,blat.proc3829891.chain_2272	4
scaffold_15	spliced_intron	3363315	3363443	-	asmbl_15096	none	STRG.18095.2,blat.proc3829895.chain_2838	2	STRG.18095.1,Trinity_GG_27191_c0_g1_i3,blat.proc3829895.chain_2840	3
scaffold_20	retained_intron	7471397	7471647	-	asmbl_26826	none	Trinity_GG_30045_c0_g1_i4,blat.proc3829899.chain_392	2	STRG.23308.1,blat.proc3829899.chain_389,blat.proc3829899.chain_391,blat.proc3829899.chain_394,blat.proc3829899.chain_395,blat.proc3829899.chain_396,blat.proc3829899.chain_399,blat.proc3829899.chain_401	8
scaffold_13	retained_exon	15511059	15511198	+	asmbl_11492	none	STRG.16580.2	1	STRG.16580.1,blat.proc3829879.chain_1334,blat.proc3829879.chain_1335	3
scaffold_3	spliced_intron	10937871	10938064	+	asmbl_40275	none	STRG.3535.2,blat.proc3829871.chain_3701	2	STRG.3535.1,blat.proc3829871.chain_3702	2
scaffold_18	alt_acceptor	9787942	9787943	-	asmbl_20117	none	STRG.21574.1,blat.proc3829897.chain_2421	2	STRG.21574.2	1
scaffold_6	retained_exon	3042228	3042317	-	asmbl_48165	none	STRG.7302.3,blat.proc3829889.chain_3316	2	STRG.7302.2,blat.proc3829889.chain_3318	2
scaffold_20	starts_in_intron	440902	440902	+	asmbl_25512	none	Trinity_GG_12563_c0_g1_i1,blat.proc3829881.chain_3674	2	STRG.22731.1,blat.proc3829881.chain_3675	2
scaffold_13	spliced_intron	2274959	2277261	-	asmbl_9402	none	STRG.15533.1,blat.proc3829895.chain_316	2	STRG.15533.2,blat.proc3829895.chain_308,blat.proc3829895.chain_310,blat.proc3829895.chain_311,blat.proc3829895.chain_317	5
scaffold_7	alt_acceptor	1679712	1679713	+	asmbl_50498	none	STRG.8641.2	1	STRG.8641.1,Trinity_GG_4747_c0_g1_i1,blat.proc3829875.chain_1070	3
scaffold_1	starts_in_intron	12928633	12928633	+	asmbl_2262	none	Trinity_GG_551_c0_g1_i2,blat.proc3829871.chain_986	2	STRG.921.1,Trinity_GG_551_c0_g1_i1,blat.proc3829871.chain_987	3
scaffold_8	alt_acceptor	12622963	12622964	-	asmbl_53211	none	STRG.10424.1,blat.proc3829891.chain_2562	2	STRG.10424.2	1
scaffold_16	starts_in_intron	6139983	6139983	-	asmbl_16318	none	Trinity_GG_27888_c1_g1_i1,blat.proc3829897.chain_390	2	STRG.19336.1,blat.proc3829897.chain_388,blat.proc3829897.chain_389	3
scaffold_1	retained_intron	18279633	18279766	-	asmbl_1097	none	STRG.1276.2	1	STRG.1276.3,blat.proc3829887.chain_1185	2
scaffold_1	retained_intron	8643816	8644313	-	asmbl_481	none	blat.proc3829887.chain_455	1	STRG.572.1,STRG.572.2,STRG.572.3,blat.proc3829887.chain_454,blat.proc3829887.chain_456,blat.proc3829887.chain_457,blat.proc3829887.chain_458	7
scaffold_22	retained_exon	9158489	9158564	-	asmbl_30282,asmbl_30285	none	STRG.25232.2,Trinity_GG_31086_c0_g1_i2,blat.proc3829899.chain_2274	3	STRG.25232.1,blat.proc3829899.chain_2273	2
scaffold_6	retained_exon	886163	886474	-	asmbl_48031	none	STRG.7153.3	1	STRG.7153.1	1
scaffold_8	retained_exon	739261	739422	+	asmbl_51655	none	STRG.9720.1	1	blat.proc3829875.chain_2176	1
scaffold_27	alt_donor	1609311	1609312	-	asmbl_36722	none	Trinity_GG_33010_c0_g1_i1,blat.proc3829901.chain_1789	2	STRG.28630.1	1
scaffold_5	skipped_exon	3591643	3592703	-	asmbl_45310	none	STRG.5822.3,blat.proc3829889.chain_1928	2	STRG.5822.5	1
scaffold_9	alt_acceptor	9470273	9470274	-	asmbl_55146,asmbl_55147,asmbl_55148,asmbl_55151	none	STRG.11298.1,blat.proc3829891.chain_3465,blat.proc3829891.chain_3466,blat.proc3829891.chain_3467	4	STRG.11298.2,STRG.11298.3,blat.proc3829891.chain_3464	3
scaffold_28	alt_acceptor	2119899	2119900	+	asmbl_38022,asmbl_38023	none	STRG.29350.2,blat.proc3829885.chain_2476	2	STRG.29350.1,blat.proc3829885.chain_2477	2
scaffold_24	retained_exon	6727435	6727650	-	asmbl_32955,asmbl_32959,asmbl_32960	none	STRG.26704.1,blat.proc3829901.chain_22,blat.proc3829901.chain_23,blat.proc3829901.chain_25	4	STRG.26704.2,blat.proc3829901.chain_21	2
scaffold_18	alt_donor	3634663	3634664	+	asmbl_20492,asmbl_20494,asmbl_20495	none	STRG.21169.1,STRG.21169.3,blat.proc3829881.chain_2050,blat.proc3829881.chain_2051	4	STRG.21169.2,blat.proc3829881.chain_2052	2
scaffold_15	alternate_exon	16367082	16367137	-	asmbl_15846,asmbl_15847	none	STRG.18980.1,Trinity_GG_27641_c0_g1_i1,Trinity_GG_27641_c0_g1_i2,blat.proc3829895.chain_3697,blat.proc3829895.chain_3698	5	STRG.18980.2	1
scaffold_3	alternate_exon	6244978	6245005	-	asmbl_38887,asmbl_38888	none	STRG.3263.5,blat.proc3829887.chain_3034	2	STRG.3263.1,STRG.3263.2,STRG.3263.6,STRG.3263.7,blat.proc3829887.chain_3031,blat.proc3829887.chain_3032,blat.proc3829887.chain_3035	7
scaffold_13	starts_in_intron	6852111	6852111	+	asmbl_10973	none	STRG.15962.2	1	STRG.15962.1,blat.proc3829879.chain_671	2
scaffold_8	alternate_exon	17811862	17818769	+	asmbl_52499,asmbl_52502	none	STRG.10687.1,Trinity_GG_5905_c0_g1_i7,blat.proc3829875.chain_3121,blat.proc3829875.chain_3124	4	STRG.10687.3,Trinity_GG_5905_c0_g1_i1,blat.proc3829875.chain_3122	3
scaffold_11	alt_acceptor	8102952	8102953	+	asmbl_5693	none	STRG.13811.2,blat.proc3829877.chain_2301	2	STRG.13811.1,STRG.13811.3,blat.proc3829877.chain_2300,blat.proc3829877.chain_2303	4
scaffold_14	starts_in_intron	5909785	5909785	-	asmbl_13082	none	STRG.17039.1	1	Trinity_GG_26560_c0_g1_i2,blat.proc3829895.chain_1716,blat.proc3829895.chain_1717	3
scaffold_3	starts_in_intron	11503762	11503762	+	asmbl_40307,asmbl_40308	none	Trinity_GG_1991_c0_g1_i3,Trinity_GG_1991_c0_g1_i4,blat.proc3829871.chain_3694,blat.proc3829871.chain_3695	4	STRG.3582.1,blat.proc3829871.chain_3696,blat.proc3829871.chain_3697	3
scaffold_23	starts_in_intron	1699363	1699363	-	asmbl_31390	none	STRG.25630.1,blat.proc3829899.chain_2740	2	STRG.25630.2,blat.proc3829899.chain_2741	2
scaffold_24	starts_in_intron	8958132	8958132	+	asmbl_32471	none	Trinity_GG_14870_c0_g1_i3,blat.proc3829885.chain_33	2	STRG.26898.1,STRG.26898.2,Trinity_GG_14870_c0_g1_i1,Trinity_GG_14870_c0_g1_i2,blat.proc3829885.chain_34,blat.proc3829885.chain_35	6
scaffold_1	alt_donor	6752941	6752942	+	asmbl_1843	none	STRG.461.1,blat.proc3829871.chain_516	2	STRG.461.2,blat.proc3829871.chain_517	2
scaffold_12	starts_in_intron	4788187	4788187	-	asmbl_7584,asmbl_7586	none	blat.proc3829893.chain_3019,blat.proc3829893.chain_3020	2	STRG.14646.4,blat.proc3829893.chain_3025	2
scaffold_4	alt_acceptor	7267956	7267957	+	asmbl_42816	none	STRG.4560.2,Trinity_GG_2542_c0_g1_i1,blat.proc3829873.chain_958	3	STRG.4560.7,Trinity_GG_2542_c0_g1_i4,blat.proc3829873.chain_960	3
scaffold_6	retained_exon	17847751	17847759	+	asmbl_47731	none	blat.proc3829875.chain_857	1	STRG.8466.1	1
scaffold_9	alt_acceptor	4206160	4206161	+	asmbl_53921	none	STRG.11013.4,blat.proc3829875.chain_3429	2	STRG.11013.3	1
scaffold_21	spliced_intron	7600965	7601122	+	asmbl_28769	none	STRG.24282.1,blat.proc3829883.chain_1430	2	STRG.24282.3,blat.proc3829883.chain_1431	2
scaffold_2	retained_intron	4788146	4788732	+	asmbl_24405,asmbl_24407	none	STRG.1897.2,STRG.1897.4,blat.proc3829871.chain_1852	3	STRG.1897.5,blat.proc3829871.chain_1853	2
scaffold_8	alt_donor	11637429	11637430	-	asmbl_53149	none	STRG.10364.3	1	STRG.10364.1,blat.proc3829891.chain_2493	2
scaffold_5	alternate_exon	1097301	1099215	-	asmbl_45214	none	STRG.5657.1	1	blat.proc3829889.chain_1801	1
scaffold_7	starts_in_intron	9810145	9810145	-	asmbl_49885	none	blat.proc3829891.chain_1383	1	STRG.9163.2	1
scaffold_23	retained_intron	4899125	4899400	+	asmbl_30836	none	STRG.25862.3	1	STRG.25862.2,Trinity_GG_14276_c0_g1_i4,blat.proc3829883.chain_2747	3
scaffold_6	ends_in_intron	1748048	1748048	+	asmbl_46684,asmbl_46687,asmbl_46689	none	STRG.7223.3,blat.proc3829873.chain_3272,blat.proc3829873.chain_3274	3	STRG.7223.1,STRG.7223.2,blat.proc3829873.chain_3275	3
scaffold_17	alt_donor	10038901	10038902	-	asmbl_19276	none	STRG.20608.2	1	STRG.20608.1,STRG.20608.6	2
scaffold_1	retained_intron	3498732	3498894	-	asmbl_148	none	blat.proc3829887.chain_122	1	STRG.217.1,STRG.217.2,STRG.217.3,blat.proc3829887.chain_114,blat.proc3829887.chain_116,blat.proc3829887.chain_117,blat.proc3829887.chain_118,blat.proc3829887.chain_119,blat.proc3829887.chain_120,blat.proc3829887.chain_121,blat.proc3829887.chain_123,blat.proc3829887.chain_124,blat.proc3829887.chain_125	13
scaffold_19	alt_acceptor	5457769	5457770	-	asmbl_21370,asmbl_21373	none	STRG.22096.1,blat.proc3829897.chain_2868,blat.proc3829897.chain_2870	3	STRG.22096.2	1
scaffold_22	skipped_exon	4231499	4232451	-	asmbl_29978,asmbl_29979,asmbl_29980,asmbl_29986	none	STRG.24838.2,STRG.24838.3,STRG.24838.4,blat.proc3829899.chain_1976	4	STRG.24838.1,blat.proc3829899.chain_1977	2
scaffold_4	alt_acceptor	10447761	10447762	-	asmbl_41588,asmbl_41589,asmbl_41592,asmbl_41593,asmbl_41596	none	STRG.4795.1,STRG.4795.2,blat.proc3829889.chain_832,blat.proc3829889.chain_834,blat.proc3829889.chain_838,blat.proc3829889.chain_839	6	STRG.4795.3,blat.proc3829889.chain_835	2
scaffold_28	alt_acceptor	5580934	5580935	+	asmbl_38288,asmbl_38290	none	STRG.29670.1,Trinity_GG_16454_c0_g1_i4,Trinity_GG_16454_c0_g1_i6,blat.proc3829885.chain_2793,blat.proc3829885.chain_2797	5	STRG.29670.2,Trinity_GG_16454_c0_g1_i5,blat.proc3829885.chain_2796	3
scaffold_3	ends_in_intron	1759201	1759201	+	asmbl_39829	none	STRG.2991.2	1	STRG.2991.1,STRG.2991.3,blat.proc3829871.chain_3179,blat.proc3829871.chain_3180,blat.proc3829871.chain_3181,blat.proc3829871.chain_3184,blat.proc3829871.chain_3185	7
scaffold_28	alt_donor	3541037	3541038	-	asmbl_37484	none	STRG.29547.2,blat.proc3829901.chain_2644	2	STRG.29547.1,STRG.29547.3,blat.proc3829901.chain_2643	3
scaffold_2	starts_in_intron	861460	861460	+	asmbl_24135,asmbl_24136	none	STRG.1560.3,blat.proc3829871.chain_1611	2	STRG.1560.1,STRG.1560.2,blat.proc3829871.chain_1607	3
scaffold_15	spliced_intron	13325003	13325087	+	asmbl_14571,asmbl_14575,asmbl_14579,asmbl_14581	none	STRG.18763.1,Trinity_GG_10264_c0_g1_i2,blat.proc3829879.chain_3300,blat.proc3829879.chain_3301,blat.proc3829879.chain_3303	5	Trinity_GG_10264_c0_g1_i6,blat.proc3829879.chain_3296,blat.proc3829879.chain_3298,blat.proc3829879.chain_3299,blat.proc3829879.chain_3302,blat.proc3829879.chain_3304	6
scaffold_9	alternate_exon	9757612	9760088	+	asmbl_54233	none	STRG.11339.2	1	STRG.11339.3	1
scaffold_3	skipped_exon	10296072	10297387	+	asmbl_40215	none	STRG.3464.2,blat.proc3829871.chain_3648	2	STRG.3464.1,blat.proc3829871.chain_3647	2
scaffold_14	spliced_intron	7495217	7495625	+	asmbl_12145	none	STRG.17177.4	1	STRG.17177.1,blat.proc3829879.chain_1838	2
scaffold_7	alt_donor	12216995	12216996	-	asmbl_50002	none	blat.proc3829891.chain_1554	1	STRG.9307.1,blat.proc3829891.chain_1555	2
scaffold_13	alternate_exon	9340711	9341204	+	asmbl_11183	none	Trinity_GG_8894_c0_g1_i1,blat.proc3829879.chain_921	2	STRG.16189.2	1
scaffold_16	skipped_exon	318247	318842	+	asmbl_16812	none	STRG.19010.1,Trinity_GG_10426_c0_g1_i3,blat.proc3829879.chain_3634	3	STRG.19010.2,blat.proc3829879.chain_3632	2
scaffold_8	retained_exon	15594	15665	-	asmbl_52671	none	STRG.9692.2,blat.proc3829891.chain_1959	2	STRG.9692.3,blat.proc3829891.chain_1960,blat.proc3829891.chain_1962	3
scaffold_10	alternate_exon	16072418	16072488	+	asmbl_4979	none	STRG.13077.1	1	STRG.13077.2,Trinity_GG_7182_c0_g1_i1,blat.proc3829877.chain_1593	3
scaffold_11	retained_intron	2446142	2446175	-	asmbl_6478,asmbl_6479	none	STRG.13386.2,Trinity_GG_24514_c0_g1_i2,blat.proc3829893.chain_1858	3	STRG.13386.1	1
scaffold_21	alternate_exon	6392213	6392769	+	asmbl_28650	none	STRG.24152.3,Trinity_GG_13325_c4_g1_i1,blat.proc3829883.chain_1204	3	STRG.24152.1,blat.proc3829883.chain_1199	2
scaffold_3	starts_in_intron	10308470	10308470	-	asmbl_39028	none	STRG.3467.2,blat.proc3829887.chain_3217	2	STRG.3467.1,blat.proc3829887.chain_3218	2
scaffold_10	ends_in_intron	9054323	9054323	-	asmbl_3568	none	blat.proc3829893.chain_1155	1	STRG.12645.1,STRG.12645.2,Trinity_GG_24079_c0_g1_i7,blat.proc3829893.chain_1151,blat.proc3829893.chain_1153,blat.proc3829893.chain_1156	6
scaffold_5	retained_intron	14262861	14263469	+	asmbl_44582,asmbl_44589	none	blat.proc3829873.chain_2765,blat.proc3829873.chain_2770	2	STRG.6629.2,blat.proc3829873.chain_2767	2
scaffold_8	alt_donor	9401258	9401259	+	asmbl_52061	none	STRG.10193.2,Trinity_GG_5642_c0_g1_i2,blat.proc3829875.chain_2654	3	STRG.10193.1,Trinity_GG_5642_c0_g1_i1,blat.proc3829875.chain_2652	3
scaffold_25	retained_intron	6301207	6301328	+	asmbl_33608,asmbl_33610,asmbl_33611,asmbl_33613	none	STRG.27516.1,blat.proc3829885.chain_464,blat.proc3829885.chain_471,blat.proc3829885.chain_473	4	blat.proc3829885.chain_465,blat.proc3829885.chain_469,blat.proc3829885.chain_470,blat.proc3829885.chain_472,blat.proc3829885.chain_474	5
scaffold_19	alt_acceptor	6791080	6791081	+	asmbl_22248	none	STRG.22187.2,blat.proc3829881.chain_3109	2	STRG.22187.1,blat.proc3829881.chain_3108	2
scaffold_12	alt_donor	16729936	16729937	-	asmbl_8280	none	STRG.15400.2,Trinity_GG_25625_c0_g1_i5,blat.proc3829895.chain_93	3	STRG.15400.1,Trinity_GG_25625_c0_g1_i1,blat.proc3829895.chain_94	3
scaffold_5	alt_donor	13316990	13316991	-	asmbl_45915,asmbl_45920	none	STRG.6578.1,STRG.6578.2	2	blat.proc3829889.chain_2545,blat.proc3829889.chain_2546,blat.proc3829889.chain_2547	3
scaffold_23	ends_in_intron	1861970	1861970	+	asmbl_30668	none	blat.proc3829883.chain_2545	1	STRG.25647.1,Trinity_GG_14162_c0_g1_i2,blat.proc3829883.chain_2546	3
scaffold_22	alternate_exon	685120	685157	+	asmbl_29173	none	Trinity_GG_13656_c0_g1_i1,blat.proc3829883.chain_1754	2	STRG.24704.2,Trinity_GG_13656_c0_g1_i2,blat.proc3829883.chain_1755	3
scaffold_6	alt_acceptor	18920664	18920665	-	asmbl_49223,asmbl_49224	none	STRG.8553.1,STRG.8553.2,blat.proc3829891.chain_868	3	STRG.8553.3,blat.proc3829891.chain_867	2
scaffold_5	skipped_exon	5737985	5739761	+	asmbl_44025	none	STRG.5984.3,blat.proc3829873.chain_2049	2	STRG.5984.4,blat.proc3829873.chain_2048	2
scaffold_21	alt_donor	8278506	8278507	+	asmbl_28819,asmbl_28821	none	STRG.24353.1,STRG.24353.3	2	STRG.24353.2	1
scaffold_11	starts_in_intron	13694385	13694385	+	asmbl_6052	none	blat.proc3829877.chain_2601	1	STRG.14220.1,blat.proc3829877.chain_2602	2
scaffold_14	alt_acceptor	10406915	10406916	+	asmbl_12299	none	STRG.17376.2	1	STRG.17376.1	1
scaffold_24	alternate_exon	1909167	1909661	-	asmbl_32736	none	blat.proc3829899.chain_3439	1	STRG.26399.4,blat.proc3829899.chain_3440	2
scaffold_1	alternate_exon	20134789	20134875	-	asmbl_1171	none	STRG.1381.3	1	STRG.1381.4,STRG.1381.5	2
scaffold_21	alternate_exon	2949472	2949533	-	asmbl_27520,asmbl_27523	none	STRG.23903.1,Trinity_GG_30331_c0_g1_i3,blat.proc3829899.chain_969,blat.proc3829899.chain_971	4	STRG.23903.3	1
scaffold_3	alternate_exon	19883604	19886549	-	asmbl_39614,asmbl_39616,asmbl_39619	none	STRG.4100.1,STRG.4100.2,STRG.4100.4,Trinity_GG_19264_c1_g1_i1,Trinity_GG_19264_c1_g1_i2,Trinity_GG_19264_c1_g1_i4,Trinity_GG_19264_c2_g1_i1,blat.proc3829889.chain_137,blat.proc3829889.chain_141,blat.proc3829889.chain_142,blat.proc3829889.chain_143,blat.proc3829889.chain_145	12	STRG.4100.3	1
scaffold_7	alt_donor	18360234	18360235	-	asmbl_50285	none	STRG.9654.2	1	STRG.9654.1,blat.proc3829891.chain_1905,blat.proc3829891.chain_1906	3
scaffold_27	spliced_intron	2786649	2786780	+	asmbl_36063,asmbl_36064,asmbl_36065	none	STRG.28736.1,blat.proc3829885.chain_1753,blat.proc3829885.chain_1755,blat.proc3829885.chain_1756	4	Trinity_GG_15895_c0_g1_i6,blat.proc3829885.chain_1754	2
scaffold_1	retained_intron	11269947	11270054	+	asmbl_2082	none	STRG.744.3	1	STRG.744.1,Trinity_GG_459_c0_g1_i1,blat.proc3829871.chain_794	3
scaffold_28	alternate_exon	5918670	5918761	+	asmbl_38308	none	STRG.29698.1	1	STRG.29698.2,STRG.29698.3,Trinity_GG_16459_c0_g1_i1,Trinity_GG_16459_c0_g1_i3,blat.proc3829885.chain_2804,blat.proc3829885.chain_2805	6
scaffold_17	spliced_intron	1523950	1524129	+	asmbl_17742	none	blat.proc3829881.chain_809	1	STRG.19977.1,blat.proc3829881.chain_810	2
scaffold_13	alt_donor	12002386	12002387	+	asmbl_11304	none	STRG.16324.2,blat.proc3829879.chain_1097	2	STRG.16324.1,blat.proc3829879.chain_1096	2
scaffold_8	starts_in_intron	17467674	17467674	-	asmbl_53474	none	blat.proc3829891.chain_2823	1	STRG.10662.1,blat.proc3829891.chain_2822	2
scaffold_7	alt_donor	17339840	17339841	-	asmbl_50245	none	STRG.9603.3	1	STRG.9603.1,STRG.9603.2,STRG.9603.4	3
scaffold_24	skipped_exon	4318881	4319606	+	asmbl_32200	none	STRG.26578.2	1	STRG.26578.3	1
scaffold_11	alt_acceptor	14587451	14587452	+	asmbl_6076,asmbl_6078	none	STRG.14246.2,blat.proc3829877.chain_2754	2	STRG.14246.1,blat.proc3829877.chain_2756	2
scaffold_16	alt_acceptor	11398449	11398450	-	asmbl_16519	none	STRG.19663.4,blat.proc3829897.chain_606	2	STRG.19663.5	1
scaffold_4	spliced_intron	16480998	16481101	-	asmbl_41931,asmbl_41933	none	Trinity_GG_19942_c0_g2_i1,blat.proc3829889.chain_1290,blat.proc3829889.chain_1291	3	STRG.5226.2,Trinity_GG_19942_c0_g2_i2,blat.proc3829889.chain_1293,blat.proc3829889.chain_1294	4
scaffold_7	spliced_intron	12428916	12429023	-	asmbl_50032	none	STRG.9329.1,blat.proc3829891.chain_1584,blat.proc3829891.chain_1587	3	Trinity_GG_22273_c0_g1_i4,blat.proc3829891.chain_1585	2
scaffold_15	alt_acceptor	13759939	13759940	-	asmbl_15682	none	blat.proc3829895.chain_3564	1	STRG.18798.1,blat.proc3829895.chain_3562,blat.proc3829895.chain_3565,blat.proc3829895.chain_3566	4
scaffold_4	alternate_exon	8091015	8091070	-	asmbl_41481	none	STRG.4625.2,Trinity_GG_19606_c0_g1_i2,blat.proc3829889.chain_732	3	STRG.4625.1	1
scaffold_16	retained_intron	6232211	6232250	-	asmbl_16332	none	blat.proc3829897.chain_385	1	STRG.19353.1	1
scaffold_20	retained_intron	10986544	10986914	+	asmbl_26158,asmbl_26161	none	STRG.23608.2,Trinity_GG_13068_c0_g1_i3,blat.proc3829883.chain_749	3	STRG.23608.1,Trinity_GG_13068_c0_g1_i1,Trinity_GG_13068_c0_g1_i4,blat.proc3829883.chain_750,blat.proc3829883.chain_751	5
scaffold_2	retained_exon	7408529	7408927	-	asmbl_23280	none	STRG.2065.4,blat.proc3829887.chain_1875	2	STRG.2065.3,blat.proc3829887.chain_1876	2
scaffold_8	spliced_intron	6902999	6903095	+	asmbl_51956,asmbl_51958	none	STRG.10042.3,blat.proc3829875.chain_2539	2	blat.proc3829875.chain_2542	1
scaffold_14	retained_exon	15584987	15585028	+	asmbl_12613	none	STRG.17785.1	1	STRG.17785.3,STRG.17785.4	2
scaffold_4	retained_intron	3231784	3232008	-	asmbl_41160	none	blat.proc3829889.chain_344	1	STRG.4246.1,blat.proc3829889.chain_340	2
scaffold_6	retained_intron	5434772	5434884	+	asmbl_46889	none	Trinity_GG_4108_c0_g1_i5,blat.proc3829873.chain_3624	2	STRG.7507.1,STRG.7507.2,STRG.7507.3,Trinity_GG_4108_c0_g1_i2,Trinity_GG_4108_c0_g1_i3,blat.proc3829873.chain_3620,blat.proc3829873.chain_3621,blat.proc3829873.chain_3622,blat.proc3829873.chain_3623	9
scaffold_12	starts_in_intron	7962673	7962673	+	asmbl_8764	none	Trinity_GG_8164_c0_g1_i3,blat.proc3829877.chain_3278	2	STRG.14845.1,STRG.14845.2,blat.proc3829877.chain_3276,blat.proc3829877.chain_3277	4
scaffold_2	alt_donor	2292693	2292694	-	asmbl_22907	none	STRG.1671.2	1	STRG.1671.1	1
scaffold_16	retained_intron	744436	744656	-	asmbl_16068,asmbl_16071	none	blat.proc3829897.chain_14,blat.proc3829897.chain_9	2	STRG.19044.1,blat.proc3829897.chain_10,blat.proc3829897.chain_13	3
scaffold_16	spliced_intron	6195725	6195800	+	asmbl_17084,asmbl_17085,asmbl_17088,asmbl_17089,asmbl_17090,asmbl_17091	none	STRG.19373.1,STRG.19373.2,STRG.19373.3,blat.proc3829881.chain_125,blat.proc3829881.chain_126,blat.proc3829881.chain_127,blat.proc3829881.chain_128,blat.proc3829881.chain_131	8	STRG.19373.4,blat.proc3829881.chain_129,blat.proc3829881.chain_130	3
scaffold_3	alt_donor	11307703	11307704	-	asmbl_39098	none	blat.proc3829887.chain_3325	1	STRG.3555.1,blat.proc3829887.chain_3324	2
scaffold_13	alt_donor	15672447	15672448	+	asmbl_11505	none	STRG.16598.1	1	STRG.16598.3	1
scaffold_25	alternate_exon	9940483	9943899	-	asmbl_34501	none	STRG.27802.3,blat.proc3829901.chain_1072	2	STRG.27802.1,STRG.27802.2	2
scaffold_26	retained_intron	5045661	5045778	+	asmbl_35466	none	blat.proc3829885.chain_1156	1	STRG.28206.1,blat.proc3829885.chain_1159,blat.proc3829885.chain_1167,blat.proc3829885.chain_1168,blat.proc3829885.chain_1169,blat.proc3829885.chain_1170	6
scaffold_11	skipped_exon	16484013	16486899	-	asmbl_7205	none	STRG.14329.2	1	STRG.14329.3	1
scaffold_21	retained_intron	5153424	5153601	-	asmbl_27643	none	STRG.24035.1,blat.proc3829899.chain_1109	2	STRG.24035.2	1
scaffold_10	alternate_exon	10429431	10430937	-	asmbl_3635,asmbl_3636	none	STRG.12721.1,STRG.12721.3,Trinity_GG_24127_c0_g1_i3,blat.proc3829893.chain_1224,blat.proc3829893.chain_1226	5	STRG.12721.2,Trinity_GG_24127_c0_g1_i2,blat.proc3829893.chain_1225	3
scaffold_9	retained_intron	11842492	11842644	-	asmbl_55297,asmbl_55298	none	blat.proc3829891.chain_3620,blat.proc3829891.chain_3622	2	STRG.11491.1,blat.proc3829891.chain_3619,blat.proc3829891.chain_3623,blat.proc3829891.chain_3624,blat.proc3829891.chain_3625,blat.proc3829891.chain_3626	6
scaffold_20	alternate_exon	502155	509425	+	asmbl_25517	none	STRG.22741.1,Trinity_GG_12562_c0_g1_i1,blat.proc3829881.chain_3673	3	STRG.22741.2	1
scaffold_13	retained_exon	12253535	12253612	+	asmbl_11329	none	STRG.16339.1,Trinity_GG_8947_c0_g1_i3,blat.proc3829879.chain_1007	3	STRG.16339.2,STRG.16339.3,Trinity_GG_8947_c0_g1_i1,blat.proc3829879.chain_1006	4
scaffold_5	alt_acceptor	18719486	18719487	-	asmbl_46246	none	Trinity_GG_20893_c0_g1_i3,blat.proc3829889.chain_2954	2	STRG.6991.1,blat.proc3829889.chain_2953	2
scaffold_6	spliced_intron	8172023	8172117	-	asmbl_48475,asmbl_48476,asmbl_48479,asmbl_48481	none	STRG.7691.1,STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3715,blat.proc3829889.chain_3716	5	Trinity_GG_21366_c0_g1_i6,blat.proc3829889.chain_3718,blat.proc3829889.chain_3724,blat.proc3829889.chain_3725	4
scaffold_3	alt_donor	15838021	15838022	+	asmbl_40546	none	STRG.3859.1,blat.proc3829873.chain_267	2	STRG.3859.2	1
scaffold_2	starts_in_intron	18612198	18612198	-	asmbl_23820	none	blat.proc3829887.chain_2517	1	blat.proc3829887.chain_2514,blat.proc3829887.chain_2515,blat.proc3829887.chain_2516	3
scaffold_16	starts_in_intron	14685920	14685920	-	asmbl_16678	none	Trinity_GG_28116_c0_g1_i3,blat.proc3829897.chain_748,blat.proc3829897.chain_750	3	STRG.19858.1,Trinity_GG_28116_c0_g1_i2,blat.proc3829897.chain_749	3
scaffold_19	starts_in_intron	13161747	13161747	+	asmbl_22669	none	blat.proc3829881.chain_3594	1	STRG.22627.1,STRG.22627.2,blat.proc3829881.chain_3595	3
scaffold_9	retained_intron	571217	571264	+	asmbl_53751	none	STRG.10779.7	1	STRG.10779.2	1
scaffold_1	spliced_intron	20354313	20354546	+	asmbl_2602,asmbl_2603,asmbl_2604,asmbl_2606,asmbl_2607,asmbl_2608	none	STRG.1398.2,STRG.1398.3,STRG.1398.4,STRG.1398.5,STRG.1398.6,STRG.1398.9	6	STRG.1398.10	1
scaffold_15	retained_intron	9818455	9818660	+	asmbl_14361,asmbl_14363,asmbl_14365	none	STRG.18487.2,blat.proc3829879.chain_3045,blat.proc3829879.chain_3046	3	STRG.18487.1,blat.proc3829879.chain_3042,blat.proc3829879.chain_3044,blat.proc3829879.chain_3047	4
scaffold_3	skipped_exon	13958707	13958998	-	asmbl_39263	none	STRG.3735.1,Trinity_GG_19075_c0_g1_i2,blat.proc3829887.chain_3521	3	STRG.3735.2,Trinity_GG_19075_c0_g1_i1,blat.proc3829887.chain_3520	3
scaffold_5	alt_donor	7740212	7740213	+	asmbl_44167,asmbl_44169	none	STRG.6144.1,STRG.6144.3,blat.proc3829873.chain_2302	3	STRG.6144.2	1
scaffold_18	retained_exon	205250	205340	+	asmbl_20299,asmbl_20302,asmbl_20304	none	STRG.20965.2,Trinity_GG_11543_c0_g1_i6,blat.proc3829881.chain_1837,blat.proc3829881.chain_1842,blat.proc3829881.chain_1843	5	STRG.20965.1,blat.proc3829881.chain_1839,blat.proc3829881.chain_1841	3
scaffold_2	spliced_intron	883173	884775	+	asmbl_24144	none	STRG.1563.3	1	STRG.1563.2	1
scaffold_9	spliced_intron	17743454	17743546	+	asmbl_54615,asmbl_54616,asmbl_54617,asmbl_54618,asmbl_54620	none	STRG.11853.1,STRG.11853.2,STRG.11853.3,blat.proc3829877.chain_521,blat.proc3829877.chain_522,blat.proc3829877.chain_523,blat.proc3829877.chain_525,blat.proc3829877.chain_527	8	blat.proc3829877.chain_526	1
scaffold_25	alt_acceptor	434816	434817	+	asmbl_33322	none	STRG.27069.1,blat.proc3829885.chain_180	2	Trinity_GG_14952_c0_g1_i1,blat.proc3829885.chain_181	2
scaffold_2	spliced_intron	18771893	18771973	+	asmbl_25283	none	STRG.2754.2	1	STRG.2754.1	1
scaffold_10	spliced_intron	378915	379004	-	asmbl_2865,asmbl_2867	none	STRG.11913.1,STRG.11913.2,blat.proc3829893.chain_302	3	STRG.11913.3,STRG.11913.4,STRG.11913.5,Trinity_GG_23607_c0_g1_i1,Trinity_GG_23607_c0_g1_i5,blat.proc3829893.chain_304,blat.proc3829893.chain_306	7
scaffold_23	starts_in_intron	5080665	5080665	-	asmbl_31602	none	blat.proc3829899.chain_2989	1	STRG.25871.1,blat.proc3829899.chain_2988	2
scaffold_1	spliced_intron	18279633	18279766	-	asmbl_1095	none	STRG.1276.3,blat.proc3829887.chain_1185	2	STRG.1276.2	1
scaffold_18	starts_in_intron	647025	647025	+	asmbl_20343	none	Trinity_GG_11517_c0_g1_i3,blat.proc3829881.chain_1787	2	STRG.20994.1,STRG.20994.2,Trinity_GG_11517_c0_g1_i1,Trinity_GG_11517_c0_g1_i4,Trinity_GG_11517_c0_g1_i6,blat.proc3829881.chain_1786,blat.proc3829881.chain_1788,blat.proc3829881.chain_1789	8
scaffold_6	alt_donor	4538371	4538372	-	asmbl_48279,asmbl_48281	none	STRG.7428.1,STRG.7428.2,Trinity_GG_21203_c1_g2_i3	3	STRG.7428.3	1
scaffold_9	retained_exon	3149642	3149822	+	asmbl_53859	none	STRG.10922.1,blat.proc3829875.chain_3396	2	STRG.10922.2,Trinity_GG_6075_c0_g1_i1,blat.proc3829875.chain_3397	3
scaffold_19	starts_in_intron	7581468	7581468	+	asmbl_22280,asmbl_22281	none	Trinity_GG_12292_c0_g1_i1,Trinity_GG_12292_c0_g1_i5,blat.proc3829881.chain_3170,blat.proc3829881.chain_3172	4	STRG.22230.1,STRG.22230.2,STRG.22230.3,blat.proc3829881.chain_3168,blat.proc3829881.chain_3171	5
scaffold_13	alt_acceptor	5127487	5127488	+	asmbl_10806,asmbl_10807,asmbl_10808	none	STRG.15801.1,blat.proc3829879.chain_497,blat.proc3829879.chain_498,blat.proc3829879.chain_499	4	STRG.15801.2,STRG.15801.3	2
scaffold_1	ends_in_intron	9163552	9163552	-	asmbl_522,asmbl_523,asmbl_524	none	blat.proc3829887.chain_524,blat.proc3829887.chain_526,blat.proc3829887.chain_528	3	STRG.610.1	1
scaffold_22	ends_in_intron	9949723	9949723	+	asmbl_29618	none	blat.proc3829883.chain_2316,blat.proc3829883.chain_2318	2	STRG.25322.1	1
scaffold_13	retained_intron	16460036	16460350	-	asmbl_10277	none	STRG.16689.2,blat.proc3829895.chain_1356	2	STRG.16689.1,Trinity_GG_26334_c0_g1_i2,blat.proc3829895.chain_1355	3
scaffold_4	spliced_intron	1441879	1442446	-	asmbl_41120	none	STRG.4175.2	1	STRG.4175.1,Trinity_GG_19353_c0_g2_i1,blat.proc3829889.chain_308	3
scaffold_11	alternate_exon	12001357	12001450	-	asmbl_7035,asmbl_7038	none	STRG.14111.4,Trinity_GG_24898_c0_g1_i1,blat.proc3829893.chain_2513	3	STRG.14111.1,Trinity_GG_24898_c0_g1_i4	2
scaffold_5	alternate_exon	3534115	3534201	-	asmbl_45305	none	STRG.5818.2	1	STRG.5818.1,Trinity_GG_20293_c0_g1_i1,blat.proc3829889.chain_1908	3
scaffold_17	retained_intron	2719992	2720105	+	asmbl_17821	none	STRG.20056.2,Trinity_GG_10966_c0_g1_i2,blat.proc3829881.chain_843	3	STRG.20056.1	1
scaffold_9	alt_donor	3413826	3413827	-	asmbl_54866,asmbl_54869,asmbl_54870	none	STRG.10946.1,STRG.10946.3,blat.proc3829891.chain_3122	3	blat.proc3829891.chain_3124	1
scaffold_13	starts_in_intron	16184078	16184078	-	asmbl_10248	none	STRG.16651.2,blat.proc3829895.chain_1343	2	STRG.16651.1,blat.proc3829895.chain_1341	2
scaffold_10	starts_in_intron	3286617	3286617	-	asmbl_3098	none	blat.proc3829893.chain_576	1	STRG.12143.1,blat.proc3829893.chain_577	2
scaffold_7	starts_in_intron	13220858	13220858	+	asmbl_51209,asmbl_51210,asmbl_51213	none	STRG.9423.3,Trinity_GG_5240_c0_g1_i1,Trinity_GG_5240_c0_g1_i2,blat.proc3829875.chain_1891,blat.proc3829875.chain_1892	5	STRG.9423.1,STRG.9423.2,Trinity_GG_5240_c0_g1_i4,blat.proc3829875.chain_1890	4
scaffold_6	skipped_exon	2843454	2844211	-	asmbl_48116,asmbl_48117	none	STRG.7273.1,STRG.7273.2,blat.proc3829889.chain_3202,blat.proc3829889.chain_3204	4	STRG.7273.3,blat.proc3829889.chain_3203,blat.proc3829889.chain_3205	3
scaffold_2	alt_acceptor	15333988	15333989	+	asmbl_25055	none	STRG.2483.2,Trinity_GG_1406_c0_g1_i6	2	STRG.2483.1,STRG.2483.3,Trinity_GG_1406_c0_g1_i1,Trinity_GG_1406_c0_g1_i2,Trinity_GG_1406_c0_g1_i3	5
scaffold_21	spliced_intron	11228603	11228728	-	asmbl_28122	none	STRG.24574.2	1	STRG.24574.1,blat.proc3829899.chain_1736	2
scaffold_24	spliced_intron	9064471	9064576	+	asmbl_32490	none	STRG.26913.1,blat.proc3829885.chain_14	2	Trinity_GG_14859_c0_g1_i1,blat.proc3829885.chain_12	2
scaffold_15	retained_intron	12000050	12000403	-	asmbl_15567,asmbl_15568	none	blat.proc3829895.chain_3417,blat.proc3829895.chain_3421	2	STRG.18630.1,STRG.18630.3,Trinity_GG_27487_c0_g1_i1,Trinity_GG_27487_c0_g1_i3,Trinity_GG_27487_c0_g1_i4,blat.proc3829895.chain_3415,blat.proc3829895.chain_3418,blat.proc3829895.chain_3419	8
scaffold_24	alternate_exon	163121	163275	-	asmbl_32693	none	STRG.26299.2,Trinity_GG_31713_c0_g1_i3,blat.proc3829899.chain_3374	3	STRG.26299.1	1
scaffold_12	retained_exon	7591312	7591701	-	asmbl_7726	none	STRG.14825.2,blat.proc3829893.chain_3220	2	STRG.14825.1,blat.proc3829893.chain_3222	2
scaffold_4	starts_in_intron	3220914	3220914	-	asmbl_41156	none	STRG.4242.2	1	STRG.4242.1,Trinity_GG_19336_c0_g1_i1,Trinity_GG_19336_c0_g1_i2,blat.proc3829889.chain_274,blat.proc3829889.chain_275	5
scaffold_10	starts_in_intron	762784	762784	-	asmbl_2922	none	blat.proc3829893.chain_408	1	STRG.11951.1,STRG.11951.2,Trinity_GG_23667_c0_g1_i1,Trinity_GG_23667_c0_g1_i2,blat.proc3829893.chain_409,blat.proc3829893.chain_410	6
scaffold_10	alt_acceptor	1976637	1976638	-	asmbl_3002	none	STRG.12040.1,blat.proc3829893.chain_494	2	STRG.12040.3	1
scaffold_12	retained_exon	12449683	12449811	+	asmbl_8969,asmbl_8971,asmbl_8972	none	STRG.15137.1,STRG.15137.2,STRG.15137.4,blat.proc3829877.chain_3559,blat.proc3829877.chain_3560	5	blat.proc3829877.chain_3557	1
scaffold_8	retained_exon	4873092	4873125	+	asmbl_51857,asmbl_51859	none	STRG.9943.3,STRG.9943.4,blat.proc3829875.chain_2420,blat.proc3829875.chain_2421	4	STRG.9943.1,STRG.9943.2,blat.proc3829875.chain_2422,blat.proc3829875.chain_2423	4
scaffold_3	retained_intron	4267463	4267695	-	asmbl_38748,asmbl_38749	none	STRG.3118.1,STRG.3118.3,Trinity_GG_18712_c0_g1_i1,Trinity_GG_18712_c0_g1_i2,Trinity_GG_18712_c0_g2_i2,blat.proc3829887.chain_2882,blat.proc3829887.chain_2883,blat.proc3829887.chain_2884	8	STRG.3118.2	1
scaffold_7	alt_acceptor	12618437	12618438	+	asmbl_51161	none	STRG.9362.2	1	STRG.9362.1,blat.proc3829875.chain_1767	2
scaffold_14	retained_intron	8278439	8279308	+	asmbl_12193,asmbl_12194	none	STRG.17235.1,STRG.17235.4,blat.proc3829879.chain_1989,blat.proc3829879.chain_1990	4	STRG.17235.3	1
scaffold_5	spliced_intron	10170961	10171274	+	asmbl_44333	none	blat.proc3829873.chain_2378	1	blat.proc3829873.chain_2377	1
scaffold_10	alt_donor	3283796	3283797	-	asmbl_3096	none	STRG.12141.2	1	STRG.12141.1,blat.proc3829893.chain_563	2
scaffold_17	skipped_exon	2354078	2358162	+	asmbl_17768	none	STRG.20017.7	1	STRG.20017.1,blat.proc3829881.chain_852,blat.proc3829881.chain_853	3
scaffold_3	retained_intron	6658263	6658355	+	asmbl_40060,asmbl_40061,asmbl_40062,asmbl_40064,asmbl_40065	none	STRG.3290.1,STRG.3290.3,STRG.3290.4,blat.proc3829871.chain_3459,blat.proc3829871.chain_3461,blat.proc3829871.chain_3464,blat.proc3829871.chain_3466	7	STRG.3290.2,STRG.3290.5,blat.proc3829871.chain_3460,blat.proc3829871.chain_3468,blat.proc3829871.chain_3469	5
scaffold_24	starts_in_intron	3655653	3655653	+	asmbl_32167	none	blat.proc3829883.chain_3405	1	STRG.26528.1,STRG.26528.2,STRG.26528.3,STRG.26528.4,STRG.26528.5,STRG.26528.6,Trinity_GG_14654_c0_g1_i1,Trinity_GG_14654_c0_g1_i10,Trinity_GG_14654_c0_g1_i3,Trinity_GG_14654_c0_g1_i7,blat.proc3829883.chain_3402,blat.proc3829883.chain_3403,blat.proc3829883.chain_3406,blat.proc3829883.chain_3407,blat.proc3829883.chain_3408,blat.proc3829883.chain_3409	16
scaffold_2	starts_in_intron	6901183	6901183	+	asmbl_24538	none	blat.proc3829871.chain_2017	1	STRG.2036.1,STRG.2036.2,STRG.2036.3,STRG.2036.5,STRG.2036.6,Trinity_GG_1103_c0_g1_i2,blat.proc3829871.chain_2015,blat.proc3829871.chain_2016,blat.proc3829871.chain_2018,blat.proc3829871.chain_2019,blat.proc3829871.chain_2020,blat.proc3829871.chain_2022	12
scaffold_11	alt_acceptor	7886971	7886972	+	asmbl_5657,asmbl_5658	none	STRG.13780.3,Trinity_GG_7587_c0_g1_i4,blat.proc3829877.chain_2255	3	STRG.13780.1,STRG.13780.2,Trinity_GG_7587_c0_g1_i1,Trinity_GG_7587_c0_g1_i3,blat.proc3829877.chain_2253,blat.proc3829877.chain_2254	6
scaffold_15	starts_in_intron	13067517	13067517	-	asmbl_15629	none	blat.proc3829895.chain_3425	1	STRG.18732.1,blat.proc3829895.chain_3424	2
scaffold_28	ends_in_intron	4203779	4203779	+	asmbl_38218,asmbl_38222	none	STRG.29593.3,Trinity_GG_16421_c0_g1_i6,blat.proc3829885.chain_2728	3	STRG.29593.1,STRG.29593.2	2
scaffold_15	retained_intron	8628465	8629828	-	asmbl_15369	none	Trinity_GG_27371_c0_g1_i1,Trinity_GG_27371_c0_g1_i2,Trinity_GG_27371_c0_g1_i3,blat.proc3829895.chain_3196,blat.proc3829895.chain_3197,blat.proc3829895.chain_3198	6	STRG.18399.1,blat.proc3829895.chain_3199,blat.proc3829895.chain_3200	3
scaffold_23	alt_acceptor	10826235	10826236	-	asmbl_31878	none	STRG.26253.2	1	STRG.26253.1,blat.proc3829899.chain_3325	2
scaffold_12	alternate_exon	15440737	15440816	-	asmbl_8223,asmbl_8226	none	STRG.15336.2,Trinity_GG_25614_c0_g1_i2,blat.proc3829895.chain_74,blat.proc3829895.chain_75	4	STRG.15336.1,blat.proc3829895.chain_77	2
scaffold_2	alt_donor	1334729	1334730	+	asmbl_24211	none	STRG.1605.3	1	STRG.1605.4,blat.proc3829871.chain_1703,blat.proc3829871.chain_1704	3
scaffold_12	alt_acceptor	7275936	7275937	-	asmbl_7692	none	STRG.14787.2,Trinity_GG_25259_c0_g1_i1,blat.proc3829893.chain_3177	3	STRG.14787.1,STRG.14787.3,Trinity_GG_25259_c0_g1_i3,blat.proc3829893.chain_3176	4
scaffold_5	retained_intron	7776853	7776926	+	asmbl_44175	none	blat.proc3829873.chain_2307	1	STRG.6152.1,blat.proc3829873.chain_2308	2
scaffold_16	alt_donor	9145668	9145669	+	asmbl_17260	none	STRG.19502.2	1	STRG.19502.1,blat.proc3829881.chain_393,blat.proc3829881.chain_396,blat.proc3829881.chain_397	4
scaffold_22	spliced_intron	485520	485599	+	asmbl_29148,asmbl_29149	none	STRG.24679.1,STRG.24679.3,Trinity_GG_13642_c0_g1_i3,blat.proc3829883.chain_1725,blat.proc3829883.chain_1726	5	blat.proc3829883.chain_1727	1
scaffold_21	retained_exon	5774120	5774824	-	asmbl_27719	none	STRG.24099.2,blat.proc3829899.chain_1199	2	STRG.24099.1,blat.proc3829899.chain_1196,blat.proc3829899.chain_1198,blat.proc3829899.chain_1200	4
scaffold_4	spliced_intron	14115549	14115636	-	asmbl_41776	none	STRG.5030.1,blat.proc3829889.chain_997	2	STRG.5030.2	1
scaffold_23	retained_intron	7279427	7279762	-	asmbl_31744	none	STRG.26034.2	1	STRG.26034.1,blat.proc3829899.chain_3127	2
scaffold_4	alt_donor	17709586	17709587	-	asmbl_42059	none	STRG.5370.1,Trinity_GG_20020_c0_g2_i1,blat.proc3829889.chain_1439	3	STRG.5370.2	1
scaffold_23	starts_in_intron	6676390	6676390	+	asmbl_30939	none	Trinity_GG_14331_c0_g1_i1,blat.proc3829883.chain_2859	2	STRG.25973.1,blat.proc3829883.chain_2858	2
scaffold_20	alternate_exon	8343716	8343807	-	asmbl_26901,asmbl_26906	none	STRG.23364.1,blat.proc3829899.chain_433,blat.proc3829899.chain_434	3	STRG.23364.3,blat.proc3829899.chain_432,blat.proc3829899.chain_435	3
scaffold_10	alt_acceptor	10503095	10503096	-	asmbl_3646	none	STRG.12727.1,blat.proc3829893.chain_1231	2	STRG.12727.2	1
scaffold_7	starts_in_intron	12369558	12369558	+	asmbl_51132	none	blat.proc3829875.chain_1804	1	blat.proc3829875.chain_1800	1
scaffold_4	skipped_exon	18931654	18932432	-	asmbl_42143	none	STRG.5473.2,blat.proc3829889.chain_1515	2	STRG.5473.1,blat.proc3829889.chain_1516	2
scaffold_18	spliced_intron	7653749	7654074	+	asmbl_20788	none	STRG.21455.1,Trinity_GG_11868_c1_g1_i2,blat.proc3829881.chain_2448	3	Trinity_GG_11868_c1_g1_i1,blat.proc3829881.chain_2449	2
scaffold_1	starts_in_intron	170465	170465	+	asmbl_1401	none	Trinity_GG_21_c0_g1_i2,blat.proc3829871.chain_34	2	STRG.14.1,Trinity_GG_21_c0_g1_i1,Trinity_GG_21_c0_g2_i2,blat.proc3829871.chain_33,blat.proc3829871.chain_36	5
scaffold_10	alternate_exon	13473285	13473562	-	asmbl_3794	none	STRG.12931.3	1	STRG.12931.2,blat.proc3829893.chain_1418,blat.proc3829893.chain_1419	3
scaffold_8	ends_in_intron	9401449	9401449	+	asmbl_52063	none	blat.proc3829875.chain_2653	1	STRG.10193.1,STRG.10193.2,Trinity_GG_5642_c0_g1_i1,Trinity_GG_5642_c0_g1_i2,blat.proc3829875.chain_2652,blat.proc3829875.chain_2654	6
scaffold_14	retained_intron	10479149	10479292	+	asmbl_12302	none	STRG.17382.2,blat.proc3829879.chain_2092	2	blat.proc3829879.chain_2091	1
scaffold_8	alternate_exon	14404971	14411940	-	asmbl_53316	none	STRG.10520.1,blat.proc3829891.chain_2543	2	STRG.10520.2	1
scaffold_1	alternate_exon	3506259	3507985	-	asmbl_148,asmbl_149,asmbl_150,asmbl_151,asmbl_155,asmbl_156,asmbl_157	none	blat.proc3829887.chain_116,blat.proc3829887.chain_117,blat.proc3829887.chain_118,blat.proc3829887.chain_120,blat.proc3829887.chain_122,blat.proc3829887.chain_124,blat.proc3829887.chain_125	7	STRG.217.1,STRG.217.2,STRG.217.3,blat.proc3829887.chain_114,blat.proc3829887.chain_119,blat.proc3829887.chain_121,blat.proc3829887.chain_123	7
scaffold_723	alternate_exon	2667	3429	-	asmbl_51572	none	blat.proc3829901.chain_3461	1	blat.proc3829901.chain_3465	1
scaffold_6	starts_in_intron	13246163	13246163	-	asmbl_48837	none	blat.proc3829891.chain_388	1	STRG.8078.1,STRG.8078.2,blat.proc3829891.chain_387	3
scaffold_15	starts_in_intron	673436	673436	-	asmbl_14953	none	blat.proc3829895.chain_2552	1	STRG.17917.1,blat.proc3829895.chain_2555	2
scaffold_17	starts_in_intron	14392480	14392480	+	asmbl_18521,asmbl_18522	none	STRG.20909.2,STRG.20909.3,blat.proc3829881.chain_1741,blat.proc3829881.chain_1744	4	STRG.20909.1,blat.proc3829881.chain_1742	2
scaffold_28	starts_in_intron	7362872	7362872	+	asmbl_38364	none	Trinity_GG_16497_c0_g1_i1,blat.proc3829885.chain_2873	2	STRG.29785.1,blat.proc3829885.chain_2874	2
scaffold_14	alt_acceptor	11247860	11247861	-	asmbl_13445,asmbl_13447	none	STRG.17444.3,STRG.17444.4	2	STRG.17444.1,blat.proc3829895.chain_2125,blat.proc3829895.chain_2126	3
scaffold_11	ends_in_intron	13248306	13248306	+	asmbl_6014	none	blat.proc3829877.chain_2655	1	STRG.14180.1,blat.proc3829877.chain_2656,blat.proc3829877.chain_2657,blat.proc3829877.chain_2659	4
scaffold_22	alternate_exon	6033608	6033666	+	asmbl_29381	none	STRG.24940.1,Trinity_GG_13804_c0_g1_i2,blat.proc3829883.chain_2018	3	STRG.24940.2,Trinity_GG_13804_c0_g1_i3,blat.proc3829883.chain_2017	3
scaffold_24	spliced_intron	1939606	1939723	-	asmbl_32741	none	STRG.26402.2,blat.proc3829899.chain_3416	2	STRG.26402.1,blat.proc3829899.chain_3415	2
scaffold_5	alternate_exon	6325777	6325804	+	asmbl_44083	none	STRG.6037.3	1	STRG.6037.1	1
scaffold_6	alt_donor	7516578	7516579	-	asmbl_48432,asmbl_48435,asmbl_48437	none	STRG.7647.1,STRG.7647.3,blat.proc3829889.chain_3683,blat.proc3829889.chain_3684	4	STRG.7647.4,blat.proc3829889.chain_3680	2
scaffold_5	spliced_intron	14262861	14263469	+	asmbl_44588	none	STRG.6629.2,blat.proc3829873.chain_2767	2	blat.proc3829873.chain_2765,blat.proc3829873.chain_2770	2
scaffold_23	retained_exon	7691095	7691195	+	asmbl_31018	none	STRG.26062.2	1	STRG.26062.1	1
scaffold_19	spliced_intron	3560904	3561075	+	asmbl_22128	none	STRG.22033.1	1	STRG.22033.3,STRG.22033.4,Trinity_GG_12191_c0_g1_i2,Trinity_GG_12191_c1_g1_i1,blat.proc3829881.chain_2992,blat.proc3829881.chain_2993,blat.proc3829881.chain_2997	7
scaffold_8	spliced_intron	11846516	11848424	+	asmbl_52270,asmbl_52282	none	blat.proc3829875.chain_2975,blat.proc3829875.chain_2977	2	STRG.10382.2,STRG.10382.3,blat.proc3829875.chain_2967,blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2976,blat.proc3829875.chain_2978,blat.proc3829875.chain_2979	11
scaffold_18	skipped_exon	3916387	3918363	-	asmbl_19821	none	STRG.21192.5	1	STRG.21192.2,STRG.21192.3,STRG.21192.4,blat.proc3829897.chain_2089	4
scaffold_28	starts_in_intron	300167	300167	+	asmbl_37967,asmbl_37968	none	STRG.29244.2,blat.proc3829885.chain_2419	2	STRG.29244.1,blat.proc3829885.chain_2416	2
scaffold_1	starts_in_intron	3276314	3276314	+	asmbl_1582	none	Trinity_GG_126_c0_g1_i3	1	STRG.202.1,blat.proc3829871.chain_215,blat.proc3829871.chain_216	3
scaffold_17	ends_in_intron	5137127	5137127	-	asmbl_18964	none	STRG.20232.4	1	STRG.20232.1,STRG.20232.2,STRG.20232.3,blat.proc3829897.chain_1206,blat.proc3829897.chain_1207,blat.proc3829897.chain_1208,blat.proc3829897.chain_1209	7
scaffold_6	alt_donor	3326155	3326156	+	asmbl_46778	none	STRG.7331.3	1	STRG.7331.1,STRG.7331.2,blat.proc3829873.chain_3376,blat.proc3829873.chain_3377	4
scaffold_2	spliced_intron	15273247	15273404	+	asmbl_25032,asmbl_25033,asmbl_25035,asmbl_25036,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25043,asmbl_25045	none	STRG.2481.1,blat.proc3829871.chain_2524,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2528,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2535,blat.proc3829871.chain_2536	10	blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	2
scaffold_6	alt_acceptor	10974650	10974651	+	asmbl_47251	none	STRG.7908.1,Trinity_GG_4301_c0_g1_i2,blat.proc3829875.chain_220	3	Trinity_GG_4301_c0_g1_i3,blat.proc3829875.chain_221	2
scaffold_27	ends_in_intron	6077216	6077216	+	asmbl_36332	none	blat.proc3829885.chain_2130	1	STRG.28989.1,STRG.28989.2,Trinity_GG_16049_c1_g1_i2,blat.proc3829885.chain_2127,blat.proc3829885.chain_2129	5
scaffold_20	alt_acceptor	1439314	1439315	-	asmbl_26497	none	STRG.22849.1	1	STRG.22849.2	1
scaffold_23	alt_acceptor	5581281	5581282	+	asmbl_30875,asmbl_30876,asmbl_30877,asmbl_30879	none	STRG.25909.1,STRG.25909.2,STRG.25909.3,blat.proc3829883.chain_2799,blat.proc3829883.chain_2801,blat.proc3829883.chain_2802,blat.proc3829883.chain_2803	7	blat.proc3829883.chain_2798	1
scaffold_13	alt_acceptor	520372	520373	+	asmbl_10458	none	STRG.15434.4	1	STRG.15434.1,STRG.15434.2,STRG.15434.3,STRG.15434.5,Trinity_GG_8491_c0_g1_i1,Trinity_GG_8491_c0_g1_i2,blat.proc3829879.chain_110,blat.proc3829879.chain_111,blat.proc3829879.chain_113,blat.proc3829879.chain_114,blat.proc3829879.chain_115,blat.proc3829879.chain_116	12
scaffold_10	alt_donor	2742090	2742091	+	asmbl_4283	none	STRG.12084.2,blat.proc3829877.chain_777	2	STRG.12084.1,blat.proc3829877.chain_778	2
scaffold_500	spliced_intron	2902	3472	+	asmbl_46448,asmbl_46449,asmbl_46450	none	STRG.30347.1,STRG.30347.3,Trinity_GG_33932_c0_g1_i3,blat.proc3829885.chain_3357,blat.proc3829885.chain_3361,blat.proc3829885.chain_3362,blat.proc3829901.chain_3250	7	STRG.30347.2,STRG.30347.4,Trinity_GG_16793_c0_g1_i10,Trinity_GG_16793_c0_g1_i19,Trinity_GG_33932_c0_g1_i2,blat.proc3829885.chain_3356,blat.proc3829885.chain_3358,blat.proc3829885.chain_3363,blat.proc3829901.chain_3251	9
scaffold_27	alternate_exon	1027884	1028132	-	asmbl_36689	none	STRG.28589.3,Trinity_GG_32976_c2_g1_i1,blat.proc3829901.chain_1731	3	STRG.28589.1,STRG.28589.2,blat.proc3829901.chain_1729	3
scaffold_12	alternate_exon	12446981	12447053	+	asmbl_8970	none	STRG.15137.3,blat.proc3829877.chain_3558	2	STRG.15137.1,STRG.15137.2,STRG.15137.4,blat.proc3829877.chain_3559,blat.proc3829877.chain_3560	5
scaffold_21	starts_in_intron	7273269	7273269	+	asmbl_28734	none	blat.proc3829883.chain_1297	1	STRG.24235.1,blat.proc3829883.chain_1296	2
scaffold_16	retained_intron	718051	718139	+	asmbl_16833	none	blat.proc3829879.chain_3599	1	STRG.19042.1,blat.proc3829879.chain_3600	2
scaffold_2	ends_in_intron	7132256	7132256	+	asmbl_24560	none	STRG.2047.1,Trinity_GG_1159_c1_g1_i1,blat.proc3829871.chain_2124	3	STRG.2047.2,STRG.2047.3,blat.proc3829871.chain_2122	3
scaffold_8	alt_acceptor	9695264	9695265	+	asmbl_52084	none	STRG.10208.2	1	STRG.10208.1,STRG.10208.3,blat.proc3829875.chain_2707,blat.proc3829875.chain_2708	4
scaffold_19	spliced_intron	11481997	11482175	-	asmbl_21613,asmbl_21614,asmbl_21615,asmbl_21619,asmbl_21623,asmbl_21624	none	STRG.22477.1,STRG.22477.2,STRG.22477.3,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184,blat.proc3829897.chain_3185,blat.proc3829897.chain_3187,blat.proc3829897.chain_3192	8	Trinity_GG_29530_c0_g1_i2,blat.proc3829897.chain_3183	2
scaffold_298	retained_exon	1776	1793	-	asmbl_38615	none	STRG.30237.2	1	STRG.30237.1,Trinity_GG_33970_c0_g1_i5,blat.proc3829901.chain_3309	3
scaffold_6	alternate_exon	10750272	10750396	+	asmbl_47235	none	blat.proc3829875.chain_279	1	STRG.7886.1,blat.proc3829875.chain_281	2
scaffold_2	retained_intron	14556531	14556641	+	asmbl_24986	none	STRG.2454.4	1	STRG.2454.1,STRG.2454.2,STRG.2454.3	3
scaffold_9	spliced_intron	6902827	6902922	-	asmbl_55047,asmbl_55048,asmbl_55049,asmbl_55051,asmbl_55052,asmbl_55054	none	STRG.11191.1,STRG.11191.2,STRG.11191.5,blat.proc3829891.chain_3367,blat.proc3829891.chain_3368,blat.proc3829891.chain_3369,blat.proc3829891.chain_3370,blat.proc3829891.chain_3372,blat.proc3829891.chain_3373	9	STRG.11191.3,STRG.11191.4,blat.proc3829891.chain_3366,blat.proc3829891.chain_3371,blat.proc3829891.chain_3374,blat.proc3829891.chain_3375	6
scaffold_4	starts_in_intron	1985261	1985261	-	asmbl_41129	none	STRG.4224.1	1	STRG.4224.2	1
scaffold_16	ends_in_intron	6148988	6148988	+	asmbl_17073	none	blat.proc3829881.chain_209	1	STRG.19342.1,blat.proc3829881.chain_208,blat.proc3829881.chain_214	3
scaffold_12	retained_exon	15096254	15096945	-	asmbl_8182	none	Trinity_GG_25549_c1_g1_i5,blat.proc3829893.chain_3693	2	STRG.15303.2	1
scaffold_8	alt_donor	16576642	16576643	-	asmbl_53439	none	STRG.10623.2,blat.proc3829891.chain_2780	2	STRG.10623.1,blat.proc3829891.chain_2781,blat.proc3829891.chain_2783	3
scaffold_26	alt_donor	9033647	9033648	+	asmbl_35723	none	STRG.28451.2,Trinity_GG_15750_c0_g1_i1,blat.proc3829885.chain_1492	3	STRG.28451.1,Trinity_GG_15750_c0_g1_i2,blat.proc3829885.chain_1493	3
scaffold_13	alt_acceptor	8353593	8353594	+	asmbl_11110,asmbl_11116	none	STRG.16112.1,STRG.16112.2,blat.proc3829879.chain_892	3	STRG.16112.3	1
scaffold_2	spliced_intron	2871451	2871540	-	asmbl_22954	none	STRG.1733.1,blat.proc3829887.chain_1491	2	blat.proc3829887.chain_1490	1
scaffold_13	alt_donor	6114519	6114520	+	asmbl_10896	none	STRG.15905.1,blat.proc3829879.chain_604	2	STRG.15905.2,blat.proc3829879.chain_603	2
scaffold_1	spliced_intron	22133297	22134524	+	asmbl_2673	none	STRG.1479.1	1	STRG.1479.2,Trinity_GG_848_c1_g2_i1,blat.proc3829871.chain_1517	3
scaffold_9	starts_in_intron	6921892	6921892	-	asmbl_55066	none	STRG.11195.1,blat.proc3829891.chain_3350	2	STRG.11195.2,blat.proc3829891.chain_3351,blat.proc3829891.chain_3352	3
scaffold_8	alt_acceptor	4194620	4194621	-	asmbl_52751	none	STRG.9887.2	1	blat.proc3829891.chain_2037	1
scaffold_6	starts_in_intron	8049669	8049669	+	asmbl_47030	none	blat.proc3829875.chain_31	1	STRG.7677.1,STRG.7677.2	2
scaffold_13	retained_intron	738856	739000	+	asmbl_10483	none	STRG.15446.2,blat.proc3829879.chain_133	2	STRG.15446.3	1
scaffold_27	spliced_intron	2824529	2824739	-	asmbl_36811,asmbl_36814	none	STRG.28744.1,blat.proc3829901.chain_1861,blat.proc3829901.chain_1862	3	blat.proc3829901.chain_1860	1
scaffold_4	alt_donor	3237418	3237419	-	asmbl_41168	none	STRG.4247.1	1	STRG.4247.3,STRG.4247.4	2
scaffold_1	retained_intron	853703	854190	+	asmbl_1426	none	STRG.42.1	1	STRG.42.2,STRG.42.3,STRG.42.4,STRG.42.6	4
scaffold_13	retained_intron	5208212	5208652	+	asmbl_10812	none	STRG.15811.2,Trinity_GG_8694_c0_g1_i2,blat.proc3829879.chain_503	3	STRG.15811.3	1
scaffold_4	ends_in_intron	16718494	16718494	-	asmbl_41957	none	STRG.5251.3	1	STRG.5251.2,blat.proc3829889.chain_1314	2
scaffold_25	alternate_exon	9447700	9448171	+	asmbl_33810	none	blat.proc3829885.chain_733	1	STRG.27744.1,blat.proc3829885.chain_732,blat.proc3829885.chain_734	3
scaffold_15	skipped_exon	13834390	13836975	-	asmbl_15695	none	STRG.18805.1,Trinity_GG_27570_c0_g1_i2,blat.proc3829895.chain_3551	3	STRG.18805.2,Trinity_GG_27570_c0_g1_i1,blat.proc3829895.chain_3552	3
scaffold_24	spliced_intron	10605221	10605541	+	asmbl_32583	none	blat.proc3829885.chain_141	1	blat.proc3829885.chain_138	1
scaffold_7	spliced_intron	3955085	3955398	-	asmbl_49646,asmbl_49647	none	blat.proc3829891.chain_1089,blat.proc3829891.chain_1090	2	blat.proc3829891.chain_1087	1
scaffold_8	spliced_intron	16397415	16398401	-	asmbl_53394	none	blat.proc3829891.chain_2683	1	STRG.10619.1,blat.proc3829891.chain_2684,blat.proc3829891.chain_2685,blat.proc3829891.chain_2686,blat.proc3829891.chain_2688,blat.proc3829891.chain_2689,blat.proc3829891.chain_2691	7
scaffold_2	skipped_exon	16357457	16357877	+	asmbl_25150	none	STRG.2573.3,blat.proc3829871.chain_2760	2	STRG.2573.1,blat.proc3829871.chain_2761	2
scaffold_1	skipped_exon	14200941	14202390	+	asmbl_2326	none	STRG.1004.1,Trinity_GG_586_c0_g1_i1,blat.proc3829871.chain_1048	3	STRG.1004.3,Trinity_GG_586_c0_g1_i5,blat.proc3829871.chain_1052	3
scaffold_11	spliced_intron	11785562	11785678	+	asmbl_5963	none	STRG.14087.2	1	STRG.14087.1	1
scaffold_15	alt_donor	3401223	3401224	-	asmbl_15107	none	STRG.18107.3	1	STRG.18107.1,STRG.18107.4,blat.proc3829895.chain_2867	3
scaffold_14	starts_in_intron	7302914	7302914	+	asmbl_12131	none	Trinity_GG_9410_c0_g1_i3,blat.proc3829879.chain_1828	2	STRG.17156.1,blat.proc3829879.chain_1827	2
scaffold_12	alt_donor	14045216	14045217	-	asmbl_8092,asmbl_8095	none	STRG.15216.1,STRG.15216.5,blat.proc3829893.chain_3661	3	STRG.15216.4,blat.proc3829893.chain_3659	2
scaffold_22	retained_intron	225300	225479	-	asmbl_29840	none	Trinity_GG_30815_c0_g1_i4,blat.proc3829899.chain_1812	2	STRG.24671.1,STRG.24671.2,STRG.24671.3,Trinity_GG_30815_c0_g1_i1,Trinity_GG_30815_c0_g1_i2,Trinity_GG_30815_c0_g1_i3,Trinity_GG_30815_c0_g1_i5,blat.proc3829899.chain_1813,blat.proc3829899.chain_1814,blat.proc3829899.chain_1815,blat.proc3829899.chain_1816	11
scaffold_16	alt_acceptor	8312926	8312927	+	asmbl_17188	none	STRG.19448.2	1	STRG.19448.1,Trinity_GG_10650_c0_g1_i1,blat.proc3829881.chain_315	3
scaffold_11	retained_intron	11640396	11641269	+	asmbl_5949,asmbl_5952,asmbl_5953	none	blat.proc3829877.chain_2570,blat.proc3829877.chain_2573,blat.proc3829877.chain_2574	3	STRG.14080.1,blat.proc3829877.chain_2568,blat.proc3829877.chain_2572	3
scaffold_10	retained_intron	3426012	3426415	+	asmbl_4322	none	blat.proc3829877.chain_783	1	STRG.12173.1,blat.proc3829877.chain_784	2
scaffold_19	ends_in_intron	12467307	12467307	-	asmbl_21701	none	Trinity_GG_29573_c2_g1_i9,blat.proc3829897.chain_3304	2	STRG.22565.1,STRG.22565.2,blat.proc3829897.chain_3303,blat.proc3829897.chain_3305,blat.proc3829897.chain_3306	5
scaffold_1	alt_acceptor	18042592	18042593	-	asmbl_1084	none	STRG.1266.2	1	STRG.1266.1,blat.proc3829887.chain_1162,blat.proc3829887.chain_1163	3
scaffold_20	alt_donor	8033237	8033238	+	asmbl_25899,asmbl_25900	none	STRG.23341.1,STRG.23341.2	2	STRG.23341.3,STRG.23341.4	2
scaffold_14	alt_acceptor	1613979	1613980	+	asmbl_11804,asmbl_11805	none	STRG.16791.1,STRG.16791.2,Trinity_GG_9256_c0_g1_i5,blat.proc3829879.chain_1537,blat.proc3829879.chain_1539	5	STRG.16791.3,STRG.16791.4,Trinity_GG_9256_c0_g1_i3,Trinity_GG_9256_c0_g1_i4,blat.proc3829879.chain_1535,blat.proc3829879.chain_1536	6
scaffold_3	retained_intron	6189213	6189316	-	asmbl_38867	none	STRG.3262.4	1	blat.proc3829887.chain_3012	1
scaffold_18	spliced_intron	8913428	8913585	-	asmbl_20078	none	blat.proc3829897.chain_2394	1	STRG.21550.3,STRG.21550.4,STRG.21550.6,blat.proc3829897.chain_2395,blat.proc3829897.chain_2398	5
scaffold_2	starts_in_intron	774778	774778	+	asmbl_24121	none	blat.proc3829871.chain_1620	1	STRG.1546.1	1
scaffold_2	alternate_exon	1595546	1595665	+	asmbl_24232	none	Trinity_GG_905_c0_g1_i6,blat.proc3829871.chain_1665	2	STRG.1628.4,blat.proc3829871.chain_1669	2
scaffold_8	spliced_intron	4233387	4233662	+	asmbl_51811,asmbl_51812	none	STRG.9899.1,blat.proc3829875.chain_2344,blat.proc3829875.chain_2345	3	blat.proc3829875.chain_2342,blat.proc3829875.chain_2343,blat.proc3829875.chain_2346	3
scaffold_13	alt_acceptor	8300387	8300388	+	asmbl_11105	none	STRG.16108.2	1	STRG.16108.1,blat.proc3829879.chain_866,blat.proc3829879.chain_867,blat.proc3829879.chain_868	4
scaffold_4	spliced_intron	4433640	4433862	+	asmbl_42598	none	STRG.4341.2,blat.proc3829873.chain_730	2	STRG.4341.1,blat.proc3829873.chain_731	2
scaffold_7	alt_acceptor	18776284	18776285	-	asmbl_50320,asmbl_50322,asmbl_50323	none	blat.proc3829891.chain_1876,blat.proc3829891.chain_1879,blat.proc3829891.chain_1880	3	STRG.9684.4	1
scaffold_4	alternate_exon	6705245	6705397	+	asmbl_42755	none	blat.proc3829873.chain_877	1	STRG.4530.3	1
scaffold_23	retained_intron	2585757	2586468	-	asmbl_31460,asmbl_31463	none	STRG.25705.1,Trinity_GG_31351_c1_g1_i4,Trinity_GG_31351_c1_g1_i6,blat.proc3829899.chain_2751	4	STRG.25705.5,blat.proc3829899.chain_2752	2
scaffold_14	alt_donor	10000192	10000193	-	asmbl_13383	none	blat.proc3829895.chain_2060	1	STRG.17356.1,STRG.17356.2,Trinity_GG_26738_c0_g1_i1,blat.proc3829895.chain_2059,blat.proc3829895.chain_2061,blat.proc3829895.chain_2062,blat.proc3829895.chain_2063	7
scaffold_28	starts_in_intron	2660838	2660838	-	asmbl_37393	none	blat.proc3829901.chain_2551	1	STRG.29437.1,blat.proc3829901.chain_2549	2
scaffold_14	starts_in_intron	14309494	14309494	+	asmbl_12521	none	Trinity_GG_9710_c0_g1_i2,blat.proc3829879.chain_2340	2	STRG.17672.1,blat.proc3829879.chain_2339	2
scaffold_2	starts_in_intron	14221149	14221149	-	asmbl_23600	none	blat.proc3829887.chain_2200	1	blat.proc3829887.chain_2201,blat.proc3829887.chain_2203	2
scaffold_3	retained_intron	10275684	10275967	+	asmbl_40208	none	blat.proc3829871.chain_3623	1	STRG.3461.2,blat.proc3829871.chain_3625	2
scaffold_2	retained_intron	1322435	1322697	+	asmbl_24206,asmbl_24207	none	STRG.1604.4,Trinity_GG_928_c0_g1_i1,blat.proc3829871.chain_1712	3	STRG.1604.5	1
scaffold_3	alt_acceptor	17109945	17109946	+	asmbl_40607,asmbl_40610,asmbl_40611	none	STRG.3957.1,STRG.3957.2,STRG.3957.4	3	STRG.3957.3	1
scaffold_12	starts_in_intron	10606750	10606750	+	asmbl_8914	none	blat.proc3829877.chain_3507	1	STRG.15020.1,STRG.15020.2,STRG.15020.3,STRG.15020.4,blat.proc3829877.chain_3504,blat.proc3829877.chain_3505,blat.proc3829877.chain_3508,blat.proc3829877.chain_3509	8
scaffold_1	ends_in_intron	18095650	18095650	-	asmbl_1091	none	Trinity_GG_17705_c0_g1_i1,blat.proc3829887.chain_1175	2	STRG.1272.1	1
scaffold_16	alt_acceptor	9562808	9562809	+	asmbl_17294	none	blat.proc3829881.chain_417	1	STRG.19543.1,blat.proc3829881.chain_416	2
scaffold_13	spliced_intron	272653	275404	+	asmbl_10438	none	STRG.15416.3	1	STRG.15416.1,blat.proc3829879.chain_125	2
scaffold_21	starts_in_intron	4749182	4749182	+	asmbl_28552	none	Trinity_GG_13310_c0_g1_i1,blat.proc3829883.chain_1169	2	STRG.24013.1,blat.proc3829883.chain_1170	2
scaffold_2	alternate_exon	889047	889458	+	asmbl_24149	none	blat.proc3829871.chain_1546	1	blat.proc3829871.chain_1550	1
scaffold_4	retained_intron	12571017	12571255	-	asmbl_41676	none	blat.proc3829889.chain_967	1	STRG.4898.1,blat.proc3829889.chain_965	2
scaffold_22	alt_acceptor	4416173	4416174	-	asmbl_30027,asmbl_30029	none	STRG.24852.1,blat.proc3829899.chain_1904,blat.proc3829899.chain_1905	3	blat.proc3829899.chain_1993	1
scaffold_18	spliced_intron	2835248	2835573	+	asmbl_20455	none	blat.proc3829881.chain_1917	1	Trinity_GG_11580_c0_g1_i11,blat.proc3829881.chain_1919	2
scaffold_11	spliced_intron	9832457	9832783	+	asmbl_5866,asmbl_5868,asmbl_5871,asmbl_5873,asmbl_5875	none	STRG.13996.1,STRG.13996.2,STRG.13996.4,blat.proc3829877.chain_2508,blat.proc3829877.chain_2512,blat.proc3829877.chain_2514	6	STRG.13996.3,Trinity_GG_7729_c0_g1_i2,blat.proc3829877.chain_2505,blat.proc3829877.chain_2510	4
scaffold_9	spliced_intron	11842903	11843151	-	asmbl_55294	none	blat.proc3829891.chain_3624,blat.proc3829891.chain_3625	2	blat.proc3829891.chain_3619,blat.proc3829891.chain_3620,blat.proc3829891.chain_3622,blat.proc3829891.chain_3623,blat.proc3829891.chain_3626	5
scaffold_5	spliced_intron	14126415	14126522	-	asmbl_45968	none	STRG.6617.1	1	blat.proc3829889.chain_2658	1
scaffold_17	starts_in_intron	9454638	9454638	+	asmbl_18208	none	Trinity_GG_11275_c0_g1_i9,blat.proc3829881.chain_1396,blat.proc3829881.chain_1397	3	STRG.20557.1,STRG.20557.2,STRG.20557.3,STRG.20557.4,Trinity_GG_11275_c0_g1_i11,Trinity_GG_11275_c0_g1_i3,Trinity_GG_11275_c0_g1_i4,Trinity_GG_11275_c0_g1_i7,Trinity_GG_11275_c0_g1_i8,blat.proc3829881.chain_1391,blat.proc3829881.chain_1392,blat.proc3829881.chain_1393,blat.proc3829881.chain_1394,blat.proc3829881.chain_1395	14
scaffold_13	alt_acceptor	3923287	3923288	-	asmbl_9554,asmbl_9555	none	STRG.15707.1,STRG.15707.2,blat.proc3829895.chain_430,blat.proc3829895.chain_431	4	STRG.15707.3	1
scaffold_26	retained_intron	5045239	5045524	+	asmbl_35468,asmbl_35480	none	blat.proc3829885.chain_1157,blat.proc3829885.chain_1163	2	STRG.28206.1,blat.proc3829885.chain_1156,blat.proc3829885.chain_1159,blat.proc3829885.chain_1167,blat.proc3829885.chain_1168,blat.proc3829885.chain_1169,blat.proc3829885.chain_1170	7
scaffold_23	starts_in_intron	10990920	10990920	-	asmbl_31898	none	Trinity_GG_31677_c0_g1_i5,blat.proc3829899.chain_3316	2	STRG.26288.2	1
scaffold_25	starts_in_intron	7318229	7318229	-	asmbl_34365	none	blat.proc3829901.chain_881	1	STRG.27557.1,Trinity_GG_32461_c0_g1_i3,blat.proc3829901.chain_882	3
scaffold_5	alt_donor	10534504	10534505	-	asmbl_45744	none	STRG.6332.3,blat.proc3829889.chain_2349	2	STRG.6332.4	1
scaffold_26	ends_in_intron	5043721	5043721	+	asmbl_35465	none	blat.proc3829885.chain_1162	1	STRG.28206.1,blat.proc3829883.chain_2394,blat.proc3829883.chain_2396,blat.proc3829885.chain_1156,blat.proc3829885.chain_1157,blat.proc3829885.chain_1158,blat.proc3829885.chain_1159,blat.proc3829885.chain_1163,blat.proc3829885.chain_1164,blat.proc3829885.chain_1167,blat.proc3829885.chain_1168,blat.proc3829885.chain_1169	12
scaffold_27	alternate_exon	9093722	9093918	-	asmbl_37077	none	STRG.29150.2,Trinity_GG_33295_c0_g1_i3,blat.proc3829901.chain_2218	3	STRG.29150.1,Trinity_GG_33295_c0_g1_i1,blat.proc3829901.chain_2217,blat.proc3829901.chain_2219	4
scaffold_1	spliced_intron	11396225	11396399	+	asmbl_2085	none	STRG.746.1,blat.proc3829871.chain_766	2	STRG.746.2	1
scaffold_27	starts_in_intron	3873245	3873245	+	asmbl_36191	none	STRG.28827.5,blat.proc3829885.chain_1960	2	STRG.28827.3,STRG.28827.4	2
scaffold_500	retained_intron	2522	2745	+	asmbl_46443,asmbl_46444,asmbl_46445,asmbl_46447,asmbl_46449	none	STRG.30347.1,STRG.30347.2,Trinity_GG_16793_c0_g1_i10,blat.proc3829885.chain_3358,blat.proc3829885.chain_3362,blat.proc3829885.chain_3363	6	STRG.30347.3,STRG.30347.4,blat.proc3829885.chain_3357,blat.proc3829885.chain_3361	4
scaffold_19	retained_intron	12247353	12247482	-	asmbl_21683,asmbl_21684	none	Trinity_GG_29555_c0_g1_i2,Trinity_GG_29555_c0_g1_i6,blat.proc3829897.chain_3241,blat.proc3829897.chain_3242	4	STRG.22540.1,STRG.22540.2,Trinity_GG_29555_c0_g1_i1,Trinity_GG_29555_c0_g1_i5,Trinity_GG_29555_c0_g1_i7,Trinity_GG_29555_c0_g1_i8,blat.proc3829897.chain_3244,blat.proc3829897.chain_3245,blat.proc3829897.chain_3246,blat.proc3829897.chain_3247	10
scaffold_27	alt_acceptor	1942465	1942466	+	asmbl_36004	none	STRG.28655.3	1	STRG.28655.1,STRG.28655.2,blat.proc3829885.chain_1686,blat.proc3829885.chain_1688	4
scaffold_28	alt_acceptor	4458523	4458524	+	asmbl_38230	none	STRG.29604.1	1	STRG.29604.2,Trinity_GG_16414_c0_g1_i1,blat.proc3829885.chain_2714	3
scaffold_11	retained_intron	4747068	4747472	+	asmbl_5473	none	Trinity_GG_7437_c0_g1_i2,blat.proc3829877.chain_2013	2	STRG.13556.1	1
scaffold_23	retained_intron	5851943	5852135	+	asmbl_30895	none	STRG.25936.1,Trinity_GG_14305_c1_g1_i1,blat.proc3829883.chain_2806	3	STRG.25936.2,Trinity_GG_14305_c1_g1_i2,blat.proc3829883.chain_2807	3
scaffold_11	retained_intron	9829435	9831678	+	asmbl_5866	none	STRG.13996.1,Trinity_GG_7729_c0_g1_i9,Trinity_GG_7729_c1_g1_i1,blat.proc3829877.chain_2513,blat.proc3829877.chain_2515	5	STRG.13996.2,blat.proc3829877.chain_2508,blat.proc3829877.chain_2512	3
scaffold_12	ends_in_intron	9942150	9942150	+	asmbl_8863	none	blat.proc3829877.chain_3392	1	STRG.14951.1,blat.proc3829877.chain_3393	2
scaffold_3	starts_in_intron	6064289	6064289	-	asmbl_38851	none	Trinity_GG_18797_c3_g1_i1,blat.proc3829887.chain_3030	2	STRG.3254.1,STRG.3254.2,blat.proc3829887.chain_3022,blat.proc3829887.chain_3026	4
scaffold_4	spliced_intron	306262	306547	-	asmbl_41069	none	STRG.4128.3,Trinity_GG_19280_c0_g2_i1,blat.proc3829889.chain_175	3	STRG.4128.2,Trinity_GG_19280_c0_g1_i1,blat.proc3829889.chain_173	3
scaffold_1	alternate_exon	14607456	14607494	+	asmbl_2381	none	STRG.1057.2	1	STRG.1057.1	1
scaffold_6	ends_in_intron	18837144	18837144	+	asmbl_47799	none	blat.proc3829875.chain_891	1	STRG.8547.1,STRG.8547.2,STRG.8547.3,STRG.8547.4,STRG.8547.5,STRG.8547.6,Trinity_GG_4669_c0_g1_i6,blat.proc3829875.chain_887,blat.proc3829875.chain_888,blat.proc3829875.chain_889,blat.proc3829875.chain_890	11
scaffold_13	retained_exon	11377478	11377534	-	asmbl_10041,asmbl_10042,asmbl_10043,asmbl_10045,asmbl_10046,asmbl_10047,asmbl_10048,asmbl_10050,asmbl_10052,asmbl_10053	none	STRG.16287.1,STRG.16287.2,STRG.16287.3,STRG.16287.4,STRG.16287.5,STRG.16287.6,Trinity_GG_26140_c0_g1_i1,Trinity_GG_26140_c0_g1_i11,Trinity_GG_26140_c0_g1_i2,Trinity_GG_26140_c0_g1_i3,Trinity_GG_26140_c0_g1_i4,Trinity_GG_26140_c0_g1_i5,Trinity_GG_26140_c0_g1_i8,Trinity_GG_26140_c0_g1_i9,blat.proc3829895.chain_1024,blat.proc3829895.chain_1026,blat.proc3829895.chain_1027,blat.proc3829895.chain_1028,blat.proc3829895.chain_1029,blat.proc3829895.chain_1032,blat.proc3829895.chain_1033,blat.proc3829895.chain_1034	22	STRG.16287.7,STRG.16287.8,Trinity_GG_26140_c0_g1_i6,blat.proc3829895.chain_1031	4
scaffold_6	spliced_intron	18098902	18099238	+	asmbl_47762	none	blat.proc3829875.chain_873	1	Trinity_GG_4668_c0_g1_i3,blat.proc3829875.chain_874	2
scaffold_28	ends_in_intron	2198112	2198112	+	asmbl_38037	none	STRG.29368.1,Trinity_GG_16268_c0_g1_i1,blat.proc3829885.chain_2447	3	STRG.29368.2,STRG.29368.3,Trinity_GG_16268_c0_g1_i2,blat.proc3829885.chain_2446	4
scaffold_4	alternate_exon	9909861	9910487	+	asmbl_42962	none	STRG.4757.2,blat.proc3829873.chain_1130	2	STRG.4757.1	1
scaffold_11	retained_intron	1985555	1985593	+	asmbl_5309	none	blat.proc3829893.chain_1765	1	STRG.13350.1	1
scaffold_14	spliced_intron	2375443	2375890	-	asmbl_12918,asmbl_12919,asmbl_12920,asmbl_12923,asmbl_12924	none	STRG.16839.1,STRG.16839.3,STRG.16839.4,blat.proc3829895.chain_1579,blat.proc3829895.chain_1580	5	STRG.16839.2,STRG.16839.6,Trinity_GG_26463_c0_g1_i6,blat.proc3829895.chain_1585,blat.proc3829895.chain_1587,blat.proc3829895.chain_1588	6
scaffold_15	retained_intron	12621910	12622004	+	asmbl_14528	none	STRG.18707.2,Trinity_GG_10271_c1_g1_i5,blat.proc3829879.chain_3317	3	blat.proc3829879.chain_3315	1
scaffold_18	alt_acceptor	8400468	8400469	+	asmbl_20859	none	STRG.21503.2	1	STRG.21503.4	1
scaffold_23	retained_intron	2587697	2587898	-	asmbl_31460,asmbl_31464	none	STRG.25705.1,blat.proc3829899.chain_2747,blat.proc3829899.chain_2748	3	STRG.25705.5	1
scaffold_23	starts_in_intron	2994855	2994855	-	asmbl_31490,asmbl_31493	none	STRG.25729.3,blat.proc3829899.chain_2864	2	STRG.25729.1,blat.proc3829899.chain_2872	2
scaffold_19	starts_in_intron	1105257	1105257	-	asmbl_21236	none	Trinity_GG_29212_c0_g1_i6,blat.proc3829897.chain_2645	2	STRG.21887.1,STRG.21887.2,STRG.21887.3,STRG.21887.4,Trinity_GG_29212_c0_g1_i3,blat.proc3829897.chain_2643	6
scaffold_21	retained_intron	7928625	7928725	+	asmbl_28788	none	STRG.24313.5	1	STRG.24313.4,blat.proc3829883.chain_1452	2
scaffold_8	alt_donor	18248533	18248534	-	asmbl_53540	none	STRG.10723.3	1	STRG.10723.1,STRG.10723.2,STRG.10723.5,blat.proc3829891.chain_2919,blat.proc3829891.chain_2921,blat.proc3829891.chain_2925	6
scaffold_9	spliced_intron	17658989	17659123	-	asmbl_55631	none	STRG.11840.3,Trinity_GG_23537_c0_g1_i1,blat.proc3829893.chain_177	3	STRG.11840.1,STRG.11840.2,Trinity_GG_23537_c0_g1_i3,Trinity_GG_23537_c0_g1_i4,blat.proc3829893.chain_175,blat.proc3829893.chain_176	6
scaffold_7	starts_in_intron	13470708	13470708	+	asmbl_51227	none	Trinity_GG_5217_c0_g1_i1,blat.proc3829875.chain_1848	2	STRG.9438.1,Trinity_GG_5217_c0_g1_i2,blat.proc3829875.chain_1849	3
scaffold_1	spliced_intron	3270497	3270864	-	asmbl_143,asmbl_144	none	STRG.199.2,STRG.199.3	2	STRG.199.4,blat.proc3829887.chain_98	2
scaffold_27	alt_acceptor	1090465	1090466	+	asmbl_35947	none	STRG.28588.1,blat.proc3829885.chain_1642	2	STRG.28588.2,STRG.28588.3,blat.proc3829885.chain_1643,blat.proc3829885.chain_1644	4
scaffold_8	alternate_exon	11742081	11742574	-	asmbl_53159	none	Trinity_GG_22741_c0_g2_i1,blat.proc3829891.chain_2443	2	STRG.10368.1,blat.proc3829891.chain_2442	2
scaffold_3	alternate_exon	11639032	11642738	+	asmbl_40318	none	STRG.3593.1,blat.proc3829873.chain_14	2	STRG.3593.2	1
scaffold_27	retained_intron	4123018	4123064	+	asmbl_36216	none	STRG.28851.1,Trinity_GG_15962_c0_g1_i1,Trinity_GG_15962_c0_g1_i3,blat.proc3829885.chain_1921,blat.proc3829885.chain_1922	5	STRG.28851.2	1
scaffold_5	retained_intron	12258749	12258866	-	asmbl_45822	none	STRG.6449.2,blat.proc3829889.chain_2505	2	STRG.6449.1,blat.proc3829889.chain_2506	2
scaffold_7	alt_donor	16155251	16155252	+	asmbl_51349,asmbl_51350	none	STRG.9568.1,STRG.9568.3,Trinity_GG_5276_c0_g1_i2,blat.proc3829875.chain_1961	4	STRG.9568.2,Trinity_GG_5276_c0_g1_i1,blat.proc3829875.chain_1960	3
scaffold_22	alternate_exon	8016441	8016539	+	asmbl_29544	none	STRG.25140.1,blat.proc3829883.chain_2220	2	STRG.25140.2	1
scaffold_1	starts_in_intron	4571471	4571471	-	asmbl_201,asmbl_206,asmbl_209,asmbl_214	none	STRG.277.2,STRG.277.3,STRG.277.4,blat.proc3829887.chain_134,blat.proc3829887.chain_138	5	STRG.277.1,blat.proc3829887.chain_133,blat.proc3829887.chain_135	3
scaffold_4	ends_in_intron	8835584	8835584	+	asmbl_42919	none	blat.proc3829873.chain_1053	1	STRG.4696.1,blat.proc3829873.chain_1054	2
scaffold_22	spliced_intron	9537969	9539952	-	asmbl_30311,asmbl_30312	none	blat.proc3829899.chain_2385,blat.proc3829899.chain_2386	2	STRG.25272.1,Trinity_GG_31161_c2_g1_i1,Trinity_GG_31161_c3_g1_i1,Trinity_GG_31161_c4_g1_i1,Trinity_GG_31161_c5_g1_i1,blat.proc3829899.chain_2389	6
scaffold_3	alt_acceptor	6184099	6184100	-	asmbl_38864,asmbl_38865,asmbl_38866	none	STRG.3262.3,blat.proc3829887.chain_3018	2	STRG.3262.4	1
scaffold_22	ends_in_intron	3788676	3788676	-	asmbl_29950,asmbl_29952,asmbl_29953	none	STRG.24796.2,STRG.24796.3,blat.proc3829899.chain_1848	3	STRG.24796.1	1
scaffold_2	starts_in_intron	7214039	7214039	+	asmbl_24579	none	Trinity_GG_1174_c0_g1_i5,blat.proc3829871.chain_2148	2	STRG.2054.1	1
scaffold_17	ends_in_intron	10008923	10008923	+	asmbl_18278	none	Trinity_GG_11292_c0_g1_i3	1	STRG.20604.1,STRG.20604.2,Trinity_GG_11292_c0_g1_i1,Trinity_GG_11292_c0_g1_i2	4
scaffold_9	retained_intron	15384227	15384543	+	asmbl_54540	none	blat.proc3829877.chain_492	1	STRG.11728.1,blat.proc3829877.chain_490,blat.proc3829877.chain_493	3
scaffold_10	spliced_intron	8896936	8897048	-	asmbl_3532,asmbl_3533,asmbl_3534,asmbl_3535,asmbl_3536,asmbl_3537,asmbl_3538,asmbl_3540,asmbl_3541	none	STRG.12629.1,blat.proc3829893.chain_1125,blat.proc3829893.chain_1127,blat.proc3829893.chain_1129,blat.proc3829893.chain_1130,blat.proc3829893.chain_1132,blat.proc3829893.chain_1133,blat.proc3829893.chain_1134,blat.proc3829893.chain_1135	9	blat.proc3829893.chain_1131,blat.proc3829893.chain_1136	2
scaffold_3	ends_in_intron	6218919	6218919	-	asmbl_38877,asmbl_38881	none	STRG.3276.3,STRG.3276.4	2	STRG.3276.1,STRG.3276.2,blat.proc3829887.chain_2934,blat.proc3829887.chain_2935,blat.proc3829887.chain_2936	5
scaffold_8	alternate_exon	16505854	16506374	-	asmbl_53414,asmbl_53416	none	Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2868	4	STRG.10621.5,blat.proc3829891.chain_2860,blat.proc3829891.chain_2864,blat.proc3829891.chain_2869	4
scaffold_22	retained_intron	7972285	7972608	+	asmbl_29538	none	STRG.25136.4,Trinity_GG_13926_c0_g1_i3,blat.proc3829883.chain_2205	3	STRG.25136.3	1
scaffold_20	starts_in_intron	1582268	1582268	+	asmbl_25589	none	blat.proc3829883.chain_9	1	STRG.22869.1	1
scaffold_4	spliced_intron	15679041	15679145	-	asmbl_41861,asmbl_41862,asmbl_41863	none	STRG.5156.1,blat.proc3829889.chain_1189,blat.proc3829889.chain_1190,blat.proc3829889.chain_1192	4	STRG.5156.2,blat.proc3829889.chain_1191,blat.proc3829889.chain_1193	3
scaffold_8	starts_in_intron	16233379	16233379	+	asmbl_52432	none	blat.proc3829875.chain_3130	1	STRG.10606.1,STRG.10606.2,STRG.10606.3,Trinity_GG_5907_c0_g1_i3,Trinity_GG_5907_c0_g1_i6,blat.proc3829875.chain_3129,blat.proc3829875.chain_3131	7
scaffold_7	retained_intron	5928121	5928803	+	asmbl_50713	none	STRG.8891.1,Trinity_GG_4833_c0_g1_i4,blat.proc3829875.chain_1204	3	blat.proc3829875.chain_1202	1
scaffold_6	alt_donor	13229094	13229095	+	asmbl_47440,asmbl_47446,asmbl_47447	none	STRG.8077.5,STRG.8077.6,blat.proc3829875.chain_505	3	STRG.8077.1,STRG.8077.4,blat.proc3829875.chain_499,blat.proc3829875.chain_504	4
scaffold_20	spliced_intron	967202	967345	+	asmbl_25550	none	STRG.22792.1	1	STRG.22792.2,Trinity_GG_12589_c0_g1_i4	2
scaffold_11	alt_acceptor	2839534	2839535	+	asmbl_5343	none	STRG.13415.1,Trinity_GG_7336_c0_g1_i2,blat.proc3829877.chain_1839	3	STRG.13415.2,STRG.13415.3,Trinity_GG_7336_c0_g1_i1,blat.proc3829877.chain_1840	4
scaffold_11	starts_in_intron	16470863	16470863	-	asmbl_7198	none	STRG.14328.2,blat.proc3829893.chain_2744	2	STRG.14328.4,blat.proc3829893.chain_2746	2
scaffold_18	alt_donor	4074385	4074386	+	asmbl_20518,asmbl_20520	none	STRG.21198.1,STRG.21198.2	2	STRG.21198.3,STRG.21198.4	2
scaffold_11	alt_donor	4745153	4745154	-	asmbl_6599	none	STRG.13555.1,blat.proc3829893.chain_2036	2	STRG.13555.2,blat.proc3829893.chain_2035,blat.proc3829893.chain_2038,blat.proc3829893.chain_2039,blat.proc3829893.chain_2040	5
scaffold_13	spliced_intron	352039	352293	-	asmbl_9268,asmbl_9270,asmbl_9271,asmbl_9273,asmbl_9274	none	STRG.15424.1,Trinity_GG_25667_c0_g1_i10,Trinity_GG_25667_c0_g1_i5,Trinity_GG_25667_c0_g1_i7,Trinity_GG_25667_c0_g1_i8,blat.proc3829895.chain_168,blat.proc3829895.chain_169,blat.proc3829895.chain_171,blat.proc3829895.chain_172,blat.proc3829895.chain_173	10	Trinity_GG_25667_c0_g1_i4,Trinity_GG_25667_c0_g1_i6,blat.proc3829895.chain_167,blat.proc3829895.chain_170	4
scaffold_2	spliced_intron	18591305	18591383	-	asmbl_23816	none	STRG.2731.1,blat.proc3829887.chain_2558	2	STRG.2731.2,blat.proc3829887.chain_2557	2
scaffold_4	retained_intron	6949321	6949391	+	asmbl_42763,asmbl_42764,asmbl_42765,asmbl_42767,asmbl_42770,asmbl_42771	none	STRG.4536.2,STRG.4536.3,Trinity_GG_2515_c0_g1_i3,Trinity_GG_2515_c0_g1_i6,Trinity_GG_2515_c0_g1_i7,blat.proc3829873.chain_900,blat.proc3829873.chain_902,blat.proc3829873.chain_904,blat.proc3829873.chain_905	9	STRG.4536.1,blat.proc3829873.chain_899,blat.proc3829873.chain_901,blat.proc3829873.chain_903	4
scaffold_8	spliced_intron	1207493	1207512	-	asmbl_52692	none	STRG.9740.3	1	STRG.9740.2	1
scaffold_3	spliced_intron	4304074	4304185	+	asmbl_39966	none	STRG.3127.2	1	STRG.3127.1	1
scaffold_4	alternate_exon	654012	654139	-	asmbl_41078	none	STRG.4135.2,Trinity_GG_19294_c0_g1_i3,blat.proc3829889.chain_203	3	STRG.4135.1,Trinity_GG_19294_c0_g1_i2,blat.proc3829889.chain_202	3
scaffold_25	retained_intron	7905410	7905469	-	asmbl_34387	none	STRG.27599.1	1	blat.proc3829901.chain_904	1
scaffold_5	spliced_intron	9079063	9079449	-	asmbl_45645	none	STRG.6236.1,Trinity_GG_20527_c0_g1_i1,blat.proc3829889.chain_2314	3	blat.proc3829889.chain_2315	1
scaffold_8	retained_intron	16503452	16503680	-	asmbl_53410	none	Trinity_GG_22960_c0_g1_i24,blat.proc3829891.chain_2856	2	STRG.10621.5,Trinity_GG_22960_c0_g1_i9,blat.proc3829891.chain_2858,blat.proc3829891.chain_2859,blat.proc3829891.chain_2865	5
scaffold_2	retained_exon	6639916	6640008	-	asmbl_23239,asmbl_23241,asmbl_23244,asmbl_23245	none	STRG.2025.1,STRG.2025.2,blat.proc3829887.chain_1946,blat.proc3829887.chain_1947,blat.proc3829887.chain_1948	5	STRG.2025.3,blat.proc3829887.chain_1945	2
scaffold_13	ends_in_intron	6740210	6740210	+	asmbl_10953	none	Trinity_GG_8755_c0_g1_i3,blat.proc3829879.chain_623	2	STRG.15942.1	1
scaffold_1	spliced_intron	12953870	12953998	-	asmbl_789	none	STRG.920.3,blat.proc3829887.chain_816	2	STRG.920.1,STRG.920.2,blat.proc3829887.chain_814,blat.proc3829887.chain_815	4
scaffold_11	retained_intron	1982041	1982111	-	asmbl_6436,asmbl_6437	none	STRG.13348.1,STRG.13348.2,blat.proc3829893.chain_1790	3	STRG.13348.3,blat.proc3829893.chain_1789	2
scaffold_28	spliced_intron	8051811	8052141	+	asmbl_38413	none	STRG.29850.1,Trinity_GG_16534_c0_g1_i1,blat.proc3829885.chain_2948	3	Trinity_GG_16534_c0_g1_i2,blat.proc3829885.chain_2949	2
scaffold_18	starts_in_intron	6002118	6002118	+	asmbl_20689	none	Trinity_GG_11733_c0_g1_i4	1	STRG.21346.5,blat.proc3829881.chain_2196,blat.proc3829881.chain_2197,blat.proc3829881.chain_2198	4
scaffold_6	ends_in_intron	16059781	16059781	-	asmbl_49037	none	Trinity_GG_21764_c0_g1_i4	1	STRG.8333.1,blat.proc3829891.chain_652	2
scaffold_20	starts_in_intron	4355652	4355652	+	asmbl_25728	none	STRG.23101.2	1	STRG.23101.1,blat.proc3829883.chain_177	2
scaffold_23	retained_intron	5339139	5340317	-	asmbl_31629,asmbl_31630,asmbl_31631	none	STRG.25890.2,Trinity_GG_31478_c0_g1_i2,Trinity_GG_31478_c0_g1_i3,blat.proc3829899.chain_2977,blat.proc3829899.chain_2978	5	STRG.25890.1,Trinity_GG_31478_c0_g1_i4,Trinity_GG_31478_c0_g1_i6,blat.proc3829899.chain_2980,blat.proc3829899.chain_2981	5
scaffold_2	starts_in_intron	3811564	3811564	-	asmbl_23032	none	blat.proc3829887.chain_1573	1	STRG.1817.1,blat.proc3829887.chain_1572	2
scaffold_19	alt_donor	5346622	5346623	-	asmbl_21357	none	STRG.22090.3,blat.proc3829897.chain_2877	2	STRG.22090.2,blat.proc3829897.chain_2876	2
scaffold_5	ends_in_intron	8780727	8780727	-	asmbl_45626	none	Trinity_GG_20510_c0_g1_i2,blat.proc3829889.chain_2294	2	STRG.6208.1,blat.proc3829889.chain_2293	2
scaffold_10	alt_acceptor	9397816	9397817	+	asmbl_4653	none	STRG.12671.1	1	blat.proc3829877.chain_1235	1
scaffold_25	alt_donor	5607607	5607608	-	asmbl_34246	none	STRG.27441.1,Trinity_GG_32369_c0_g1_i1,blat.proc3829901.chain_705	3	STRG.27441.2	1
scaffold_13	starts_in_intron	3820333	3820333	-	asmbl_9553	none	STRG.15696.1	1	STRG.15696.2,STRG.15696.3,blat.proc3829895.chain_451	3
scaffold_27	skipped_exon	9989075	9989784	+	asmbl_36511	none	STRG.29212.2	1	STRG.29212.1,Trinity_GG_16196_c0_g1_i1,blat.proc3829885.chain_2343	3
scaffold_15	retained_intron	12390490	12391005	-	asmbl_15586	none	Trinity_GG_27509_c0_g1_i5,blat.proc3829895.chain_3450	2	STRG.18686.1,STRG.18686.4,blat.proc3829895.chain_3453	3
scaffold_6	spliced_intron	12479611	12479961	+	asmbl_47336,asmbl_47337	none	STRG.7999.2,blat.proc3829875.chain_408	2	STRG.7999.1,STRG.7999.3,STRG.7999.4,blat.proc3829875.chain_407,blat.proc3829875.chain_409	5
scaffold_11	spliced_intron	9829435	9831678	+	asmbl_5868,asmbl_5873	none	STRG.13996.2,blat.proc3829877.chain_2508,blat.proc3829877.chain_2512	3	STRG.13996.1,Trinity_GG_7729_c0_g1_i9,Trinity_GG_7729_c1_g1_i1,blat.proc3829877.chain_2513,blat.proc3829877.chain_2515	5
scaffold_10	retained_exon	17683072	17683193	+	asmbl_5063	none	STRG.13207.2	1	STRG.13207.1	1
scaffold_9	ends_in_intron	3275260	3275260	-	asmbl_54857	none	blat.proc3829891.chain_3105	1	STRG.10932.1	1
scaffold_6	alternate_exon	7940278	7940500	-	asmbl_48451	none	STRG.7666.2	1	STRG.7666.4	1
scaffold_11	spliced_intron	2446142	2446175	-	asmbl_6480	none	STRG.13386.1	1	STRG.13386.2,Trinity_GG_24514_c0_g1_i2,blat.proc3829893.chain_1858	3
scaffold_14	retained_intron	2374520	2375412	-	asmbl_12913,asmbl_12914,asmbl_12921,asmbl_12924	none	STRG.16839.2,STRG.16839.6,Trinity_GG_26463_c0_g1_i6,blat.proc3829895.chain_1579,blat.proc3829895.chain_1585,blat.proc3829895.chain_1588	6	STRG.16839.1,STRG.16839.3,STRG.16839.4,blat.proc3829895.chain_1580,blat.proc3829895.chain_1587	5
scaffold_2	retained_intron	15455614	15455683	+	asmbl_25068	none	blat.proc3829871.chain_2684	1	STRG.2500.1,STRG.2500.2,blat.proc3829871.chain_2679,blat.proc3829871.chain_2680,blat.proc3829871.chain_2681,blat.proc3829871.chain_2682,blat.proc3829871.chain_2683,blat.proc3829871.chain_2685	8
scaffold_7	spliced_intron	8659757	8660031	-	asmbl_49835	none	STRG.9091.1	1	blat.proc3829891.chain_1357	1
scaffold_1	alt_acceptor	19045251	19045252	+	asmbl_2564	none	STRG.1337.3,blat.proc3829871.chain_1393	2	STRG.1337.4,blat.proc3829871.chain_1392	2
scaffold_12	alternate_exon	11209285	11209366	-	asmbl_7921	none	STRG.15049.2	1	STRG.15049.1	1
scaffold_14	spliced_intron	2376089	2376796	-	asmbl_12913,asmbl_12918,asmbl_12920,asmbl_12922	none	STRG.16839.2,STRG.16839.3,STRG.16839.4,STRG.16839.5,blat.proc3829895.chain_1588	5	STRG.16839.1,STRG.16839.6,Trinity_GG_26463_c0_g1_i6,blat.proc3829895.chain_1579,blat.proc3829895.chain_1580,blat.proc3829895.chain_1581,blat.proc3829895.chain_1585,blat.proc3829895.chain_1587	8
scaffold_12	alt_donor	12451819	12451820	+	asmbl_8972	none	STRG.15137.4	1	STRG.15137.2,blat.proc3829877.chain_3559,blat.proc3829877.chain_3560	3
scaffold_5	skipped_exon	15703896	15706366	+	asmbl_44673	none	STRG.6756.2	1	STRG.6756.1,blat.proc3829873.chain_2831,blat.proc3829873.chain_2832	3
scaffold_2	alt_acceptor	888817	888818	+	asmbl_24149	none	blat.proc3829871.chain_1546	1	STRG.1564.5,blat.proc3829871.chain_1550	2
scaffold_2	starts_in_intron	5073683	5073683	-	asmbl_23150	none	STRG.1922.1,blat.proc3829887.chain_1823	2	STRG.1922.2,STRG.1922.3,STRG.1922.4,blat.proc3829887.chain_1822	4
scaffold_19	retained_intron	11483212	11483436	-	asmbl_21615	none	STRG.22477.1,blat.proc3829897.chain_3181	2	blat.proc3829897.chain_3187,blat.proc3829897.chain_3188,blat.proc3829897.chain_3192	3
scaffold_22	ends_in_intron	4244601	4244601	-	asmbl_29983	none	Trinity_GG_30899_c4_g1_i1,blat.proc3829899.chain_1987	2	STRG.24838.1,STRG.24838.2,STRG.24838.3,STRG.24838.4,blat.proc3829899.chain_1985	5
scaffold_1	alternate_exon	20742759	20743261	-	asmbl_1199	none	blat.proc3829887.chain_1304	1	STRG.1419.1,blat.proc3829887.chain_1306	2
scaffold_27	alt_acceptor	3099952	3099953	-	asmbl_36849	none	STRG.28773.2,blat.proc3829901.chain_1983	2	STRG.28773.1,blat.proc3829901.chain_1984	2
scaffold_14	starts_in_intron	6283337	6283337	+	asmbl_12038,asmbl_12039	none	STRG.17063.6,STRG.17063.7,blat.proc3829879.chain_1739,blat.proc3829879.chain_1743	4	STRG.17063.1,STRG.17063.2,STRG.17063.3,STRG.17063.4,STRG.17063.5,blat.proc3829879.chain_1740,blat.proc3829879.chain_1741,blat.proc3829879.chain_1742,blat.proc3829879.chain_1744,blat.proc3829879.chain_1745,blat.proc3829879.chain_1746	11
scaffold_19	spliced_intron	8805742	8805900	+	asmbl_22359	none	STRG.22319.4	1	STRG.22319.3	1
scaffold_13	alt_acceptor	5551885	5551886	+	asmbl_10855	none	blat.proc3829879.chain_472	1	STRG.15842.1,blat.proc3829879.chain_471,blat.proc3829879.chain_473	3
scaffold_4	alternate_exon	7657315	7657489	-	asmbl_41469	none	STRG.4595.1	1	STRG.4595.2,blat.proc3829889.chain_639	2
scaffold_22	starts_in_intron	7945589	7945589	+	asmbl_29534	none	blat.proc3829883.chain_2158	1	STRG.25137.1,blat.proc3829883.chain_2159,blat.proc3829883.chain_2161	3
scaffold_21	spliced_intron	5536873	5536964	-	asmbl_27699,asmbl_27700,asmbl_27702,asmbl_27703,asmbl_27704,asmbl_27705	none	STRG.24073.1,STRG.24073.2,STRG.24073.3,blat.proc3829899.chain_1163,blat.proc3829899.chain_1165,blat.proc3829899.chain_1168	6	Trinity_GG_30443_c0_g1_i6,blat.proc3829899.chain_1166,blat.proc3829899.chain_1167	3
scaffold_6	alt_acceptor	3214578	3214579	-	asmbl_48177,asmbl_48180	none	STRG.7319.1,STRG.7319.3,blat.proc3829889.chain_3332	3	STRG.7319.2,blat.proc3829889.chain_3331,blat.proc3829889.chain_3333	3
scaffold_17	ends_in_intron	8042582	8042582	-	asmbl_19113	none	Trinity_GG_28502_c0_g1_i3,blat.proc3829897.chain_1390	2	STRG.20411.1,STRG.20411.2,blat.proc3829897.chain_1391,blat.proc3829897.chain_1392	4
scaffold_26	starts_in_intron	5043301	5043301	+	asmbl_35471,asmbl_35476	none	Trinity_GG_14060_c0_g1_i3,blat.proc3829883.chain_2394,blat.proc3829883.chain_2397	3	STRG.28206.1,blat.proc3829883.chain_2396,blat.proc3829885.chain_1156,blat.proc3829885.chain_1157,blat.proc3829885.chain_1158,blat.proc3829885.chain_1159,blat.proc3829885.chain_1162,blat.proc3829885.chain_1163,blat.proc3829885.chain_1164,blat.proc3829885.chain_1168,blat.proc3829885.chain_1169	11
scaffold_6	alternate_exon	12390796	12391063	+	asmbl_47329	none	STRG.7989.2,Trinity_GG_4387_c0_g1_i2,blat.proc3829875.chain_400	3	STRG.7989.1,blat.proc3829875.chain_401	2
scaffold_9	alt_acceptor	11788097	11788098	+	asmbl_54365	none	STRG.11481.1,blat.proc3829877.chain_231	2	STRG.11481.2,blat.proc3829877.chain_230	2
scaffold_566	alt_acceptor	4174	4175	+	asmbl_46537	none	STRG.30371.1	1	blat.proc3829879.chain_709	1
scaffold_2	alt_acceptor	4009116	4009117	+	asmbl_24348	none	STRG.1841.1,blat.proc3829871.chain_1892	2	STRG.1841.3	1
scaffold_4	alt_acceptor	4444042	4444043	+	asmbl_42603	none	STRG.4343.1,Trinity_GG_2424_c0_g1_i1,blat.proc3829873.chain_744	3	STRG.4343.2,Trinity_GG_2424_c0_g1_i2,blat.proc3829873.chain_743	3
scaffold_18	retained_exon	4463867	4463917	+	asmbl_20550	none	STRG.21230.2,blat.proc3829881.chain_2121	2	STRG.21230.1,blat.proc3829881.chain_2122,blat.proc3829881.chain_2123	3
scaffold_14	spliced_intron	9273611	9273885	-	asmbl_13343,asmbl_13345,asmbl_13348	none	STRG.17323.1,blat.proc3829895.chain_1995,blat.proc3829895.chain_1996,blat.proc3829895.chain_1997	4	blat.proc3829895.chain_1994,blat.proc3829895.chain_1998	2
scaffold_7	alt_acceptor	2957967	2957968	-	asmbl_49589	none	STRG.8708.1,blat.proc3829891.chain_1055	2	STRG.8708.2,blat.proc3829891.chain_1056	2
scaffold_27	retained_intron	9917345	9917430	+	asmbl_36494	none	Trinity_GG_16190_c1_g1_i6,blat.proc3829885.chain_2333	2	blat.proc3829885.chain_2332	1
scaffold_23	alt_acceptor	2151778	2151779	-	asmbl_31415	none	STRG.25664.1	1	STRG.25664.2,blat.proc3829899.chain_2766,blat.proc3829899.chain_2767	3
scaffold_26	spliced_intron	3562965	3563144	+	asmbl_35322	none	STRG.28018.4,blat.proc3829885.chain_1003	2	STRG.28018.5,Trinity_GG_15467_c0_g1_i5,blat.proc3829885.chain_1002,blat.proc3829885.chain_1004	4
scaffold_15	alt_donor	14634491	14634492	-	asmbl_15753	none	STRG.18867.4	1	STRG.18867.1,STRG.18867.2,STRG.18867.3,blat.proc3829895.chain_3643,blat.proc3829895.chain_3644,blat.proc3829895.chain_3645	6
scaffold_1	ends_in_intron	14202248	14202248	+	asmbl_2323,asmbl_2324	none	blat.proc3829871.chain_1045,blat.proc3829871.chain_1051	2	STRG.1004.1,STRG.1004.3,Trinity_GG_586_c0_g1_i1,Trinity_GG_586_c0_g1_i5,blat.proc3829871.chain_1048,blat.proc3829871.chain_1049,blat.proc3829871.chain_1052	7
scaffold_24	retained_intron	6297543	6297691	+	asmbl_32306	none	STRG.26668.3,Trinity_GG_14747_c0_g1_i3,blat.proc3829883.chain_3576	3	STRG.26668.1,Trinity_GG_14747_c0_g1_i1,blat.proc3829883.chain_3577	3
scaffold_1	alt_acceptor	12956635	12956636	+	asmbl_2268,asmbl_2270	none	STRG.926.1,STRG.926.2,blat.proc3829871.chain_1015	3	STRG.926.3,blat.proc3829871.chain_1014	2
scaffold_4	retained_intron	16131996	16133361	-	asmbl_41889	none	STRG.5182.1,Trinity_GG_19903_c0_g1_i3,Trinity_GG_19903_c1_g1_i1,Trinity_GG_19903_c2_g1_i1,blat.proc3829889.chain_1225,blat.proc3829889.chain_1226	6	STRG.5182.2,STRG.5182.3	2
scaffold_5	alt_acceptor	12540560	12540561	-	asmbl_45843,asmbl_45845	none	STRG.6491.2,STRG.6491.3,blat.proc3829889.chain_2541	3	STRG.6491.1	1
scaffold_15	retained_intron	4753368	4753541	+	asmbl_14110,asmbl_14112	none	STRG.18176.2,Trinity_GG_9981_c0_g1_i1,blat.proc3829879.chain_2825,blat.proc3829879.chain_2827	4	STRG.18176.1,blat.proc3829879.chain_2826	2
scaffold_6	starts_in_intron	9133910	9133910	+	asmbl_47144,asmbl_47148,asmbl_47152	none	STRG.7784.3,blat.proc3829875.chain_202,blat.proc3829875.chain_204	3	STRG.7784.1,STRG.7784.2,blat.proc3829875.chain_195,blat.proc3829875.chain_197,blat.proc3829875.chain_198,blat.proc3829875.chain_201,blat.proc3829875.chain_203	7
scaffold_21	spliced_intron	6817863	6818183	+	asmbl_28718,asmbl_28721	none	STRG.24196.1,blat.proc3829883.chain_1300,blat.proc3829883.chain_1304	3	blat.proc3829883.chain_1301,blat.proc3829883.chain_1303	2
scaffold_10	spliced_intron	11908965	11909113	+	asmbl_4776,asmbl_4780	none	STRG.12815.1,Trinity_GG_7071_c0_g1_i5,blat.proc3829877.chain_1402,blat.proc3829877.chain_1403	4	STRG.12815.2,Trinity_GG_7071_c0_g1_i2,Trinity_GG_7071_c0_g1_i3,blat.proc3829877.chain_1400,blat.proc3829877.chain_1401,blat.proc3829877.chain_1404	6
scaffold_18	retained_intron	1903420	1904370	-	asmbl_19689,asmbl_19690,asmbl_19695,asmbl_19696	none	STRG.21072.3,Trinity_GG_28789_c0_g2_i1,Trinity_GG_28789_c3_g1_i1,blat.proc3829897.chain_1904,blat.proc3829897.chain_1907	5	STRG.21072.9,blat.proc3829897.chain_1890,blat.proc3829897.chain_1898	3
scaffold_5	alternate_exon	18705518	18707286	-	asmbl_46234	none	STRG.6989.1,Trinity_GG_20900_c2_g1_i1,blat.proc3829889.chain_2966	3	STRG.6989.2	1
scaffold_4	spliced_intron	7380297	7380425	-	asmbl_41454	none	STRG.4576.2	1	STRG.4576.1,blat.proc3829889.chain_685	2
scaffold_9	ends_in_intron	5759083	5759083	-	asmbl_54993	none	Trinity_GG_23161_c1_g1_i2,blat.proc3829891.chain_3243	2	STRG.11135.1,STRG.11135.3,STRG.11135.4,Trinity_GG_23161_c1_g1_i1,blat.proc3829891.chain_3242	5
scaffold_11	alt_donor	17086457	17086458	-	asmbl_7225	none	STRG.14362.4,blat.proc3829893.chain_2767	2	STRG.14362.1,STRG.14362.5	2
scaffold_10	alt_acceptor	17349925	17349926	-	asmbl_3956	none	blat.proc3829893.chain_1595	1	blat.proc3829893.chain_1594	1
scaffold_18	retained_intron	8425824	8425992	-	asmbl_20044	none	STRG.21509.1,Trinity_GG_29031_c0_g1_i1,blat.proc3829897.chain_2335	3	STRG.21509.2,Trinity_GG_29031_c0_g1_i2,blat.proc3829897.chain_2336	3
scaffold_20	alt_donor	4262353	4262354	-	asmbl_26651	none	STRG.23096.3	1	STRG.23096.2	1
scaffold_16	alt_donor	6534180	6534181	+	asmbl_17105,asmbl_17108	none	STRG.19359.1,STRG.19359.2,Trinity_GG_10611_c0_g1_i3,Trinity_GG_10611_c0_g1_i4,blat.proc3829881.chain_250,blat.proc3829881.chain_252	6	Trinity_GG_10611_c0_g1_i1,blat.proc3829881.chain_251	2
scaffold_28	starts_in_intron	8133431	8133431	+	asmbl_38420	none	Trinity_GG_16544_c0_g1_i2,blat.proc3829885.chain_2968	2	STRG.29854.1,blat.proc3829885.chain_2969	2
scaffold_23	alternate_exon	4101046	4104118	-	asmbl_31549	none	STRG.25802.4,STRG.25802.5	2	STRG.25802.3,blat.proc3829899.chain_2937	2
scaffold_13	starts_in_intron	15254463	15254463	-	asmbl_10201	none	blat.proc3829895.chain_1223	1	STRG.16560.1	1
scaffold_26	spliced_intron	9843220	9843314	+	asmbl_35801,asmbl_35806,asmbl_35807,asmbl_35810,asmbl_35812,asmbl_35814	none	STRG.28526.5,blat.proc3829885.chain_1556,blat.proc3829885.chain_1558,blat.proc3829885.chain_1561,blat.proc3829885.chain_1562,blat.proc3829885.chain_1564,blat.proc3829885.chain_1567	7	blat.proc3829885.chain_1566	1
scaffold_7	alt_donor	5837172	5837173	+	asmbl_50708	none	STRG.8881.1	1	STRG.8881.2	1
scaffold_21	retained_exon	4663693	4663832	-	asmbl_27609	none	STRG.24000.2	1	STRG.24000.1	1
scaffold_19	alternate_exon	8894427	8894455	-	asmbl_21528	none	STRG.22333.2	1	STRG.22333.1,blat.proc3829897.chain_3044	2
scaffold_17	alt_acceptor	5997662	5997663	+	asmbl_17963,asmbl_17965,asmbl_17966	none	STRG.20273.2,STRG.20273.4,STRG.20273.5,blat.proc3829881.chain_1091	4	STRG.20273.1	1
scaffold_24	starts_in_intron	6801014	6801014	-	asmbl_32972,asmbl_32973	none	blat.proc3829901.chain_12,blat.proc3829901.chain_13	2	STRG.26711.1,STRG.26711.2,STRG.26711.3,blat.proc3829901.chain_14,blat.proc3829901.chain_15	5
scaffold_12	starts_in_intron	4982755	4982755	+	asmbl_8590	none	blat.proc3829877.chain_3086	1	STRG.14656.1,STRG.14656.2,blat.proc3829877.chain_3081,blat.proc3829877.chain_3082,blat.proc3829877.chain_3084,blat.proc3829877.chain_3087	6
scaffold_22	alt_acceptor	9340082	9340083	-	asmbl_30302	none	STRG.25263.3	1	STRG.25263.2	1
scaffold_22	skipped_exon	6104579	6107430	-	asmbl_30074	none	STRG.24950.2	1	STRG.24950.1,blat.proc3829899.chain_2006	2
scaffold_3	retained_intron	11654136	11654326	+	asmbl_40324,asmbl_40327,asmbl_40328	none	STRG.3612.1,STRG.3612.2,Trinity_GG_2013_c0_g1_i1,Trinity_GG_2013_c0_g1_i4,Trinity_GG_2013_c0_g1_i5,blat.proc3829871.chain_3736,blat.proc3829871.chain_3737,blat.proc3829871.chain_3738	8	STRG.3612.3,STRG.3612.4,Trinity_GG_2013_c0_g1_i2,blat.proc3829871.chain_3735	4
scaffold_8	alt_acceptor	8747360	8747361	+	asmbl_52018,asmbl_52019	none	STRG.10124.2,blat.proc3829875.chain_2640	2	STRG.10124.1,blat.proc3829875.chain_2641	2
scaffold_15	spliced_intron	15413654	15413826	+	asmbl_14732,asmbl_14737	none	STRG.18922.6,blat.proc3829879.chain_3550	2	STRG.18922.3,STRG.18922.4,STRG.18922.5,blat.proc3829879.chain_3551,blat.proc3829879.chain_3552,blat.proc3829879.chain_3553,blat.proc3829879.chain_3556,blat.proc3829879.chain_3557	8
scaffold_1	retained_intron	7370155	7370238	-	asmbl_439,asmbl_440,asmbl_441,asmbl_443	none	STRG.517.1,STRG.517.2,STRG.517.3,STRG.517.5,Trinity_GG_17298_c0_g1_i1,blat.proc3829887.chain_413	6	STRG.517.4	1
scaffold_4	starts_in_intron	13762817	13762817	-	asmbl_41751	none	blat.proc3829889.chain_1051	1	STRG.4997.3	1
scaffold_1	retained_intron	5736786	5736896	-	asmbl_299	none	Trinity_GG_17216_c0_g1_i1,blat.proc3829887.chain_250	2	STRG.381.1	1
scaffold_14	alternate_exon	7430265	7430328	+	asmbl_12137,asmbl_12138	none	STRG.17164.2,STRG.17164.3,blat.proc3829879.chain_1885,blat.proc3829879.chain_1886	4	STRG.17164.1	1
scaffold_1	ends_in_intron	7272145	7272145	-	asmbl_426	none	Trinity_GG_17301_c0_g1_i5,blat.proc3829887.chain_428	2	blat.proc3829887.chain_426	1
scaffold_16	retained_intron	3706316	3706582	+	asmbl_16938	none	blat.proc3829881.chain_34	1	STRG.19166.1,blat.proc3829881.chain_35,blat.proc3829881.chain_36	3
scaffold_6	retained_intron	8172176	8172279	-	asmbl_48471,asmbl_48472,asmbl_48473	none	Trinity_GG_21366_c0_g1_i6,blat.proc3829889.chain_3718	2	STRG.7691.1,STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3715,blat.proc3829889.chain_3716,blat.proc3829889.chain_3724,blat.proc3829889.chain_3725	7
scaffold_6	retained_intron	12484297	12484408	+	asmbl_47339,asmbl_47340	none	STRG.8000.2,STRG.8000.3,Trinity_GG_4381_c0_g1_i1,Trinity_GG_4381_c0_g1_i3,blat.proc3829875.chain_393,blat.proc3829875.chain_394	6	STRG.8000.4	1
scaffold_19	ends_in_intron	8616316	8616316	+	asmbl_22340	none	blat.proc3829881.chain_3224	1	STRG.22301.1	1
scaffold_5	alt_donor	18993044	18993045	+	asmbl_44954,asmbl_44955	none	STRG.7007.2,Trinity_GG_3838_c1_g1_i1,blat.proc3829873.chain_3125	3	STRG.7007.1,Trinity_GG_3838_c1_g1_i2,blat.proc3829873.chain_3126	3
scaffold_11	alt_acceptor	6018972	6018973	+	asmbl_5564,asmbl_5565	none	STRG.13657.1,STRG.13657.3,blat.proc3829877.chain_2112	3	STRG.13657.2,blat.proc3829877.chain_2113	2
scaffold_6	alternate_exon	12635171	12635236	+	asmbl_47359,asmbl_47363	none	STRG.8015.3,Trinity_GG_4352_c0_g1_i3,blat.proc3829875.chain_333	3	STRG.8015.1,STRG.8015.2,blat.proc3829875.chain_334	3
scaffold_6	alternate_exon	2929494	2929937	-	asmbl_48141,asmbl_48142	none	STRG.7290.2,blat.proc3829889.chain_3236,blat.proc3829889.chain_3237	3	STRG.7290.3,STRG.7290.4,blat.proc3829889.chain_3235	3
scaffold_16	alt_donor	15174353	15174354	+	asmbl_17520	none	STRG.19865.2	1	STRG.19865.1,Trinity_GG_10881_c0_g1_i1,Trinity_GG_10881_c0_g1_i2,blat.proc3829881.chain_709,blat.proc3829881.chain_710	5
scaffold_15	starts_in_intron	16364553	16364553	+	asmbl_14807	none	Trinity_GG_10402_c0_g1_i3,blat.proc3829879.chain_3585	2	STRG.18977.1,blat.proc3829879.chain_3583,blat.proc3829879.chain_3584	3
scaffold_5	alt_acceptor	5738074	5738075	+	asmbl_44028	none	STRG.5984.2,blat.proc3829873.chain_2047	2	STRG.5984.1,blat.proc3829873.chain_2048	2
scaffold_21	ends_in_intron	273106	273106	+	asmbl_28277	none	Trinity_GG_13143_c0_g1_i2,blat.proc3829883.chain_880	2	STRG.23711.1,Trinity_GG_13143_c0_g1_i1,blat.proc3829883.chain_879	3
scaffold_27	skipped_exon	381931	384414	-	asmbl_36635	none	STRG.28547.2,blat.proc3829901.chain_1686	2	STRG.28547.4,blat.proc3829901.chain_1685	2
scaffold_1	starts_in_intron	3614568	3614568	-	asmbl_168	none	blat.proc3829887.chain_127	1	STRG.223.1,blat.proc3829887.chain_129	2
scaffold_3	alt_acceptor	5664140	5664141	+	asmbl_40031	none	STRG.3224.3,blat.proc3829871.chain_3410	2	STRG.3224.1,blat.proc3829871.chain_3409	2
scaffold_14	ends_in_intron	13899081	13899081	+	asmbl_12498	none	STRG.17653.3	1	STRG.17653.2,STRG.17653.4,STRG.17653.5	3
scaffold_5	alternate_exon	991062	991240	-	asmbl_45199,asmbl_45202	none	STRG.5644.2,blat.proc3829889.chain_1764	2	STRG.5644.1,STRG.5644.3,STRG.5644.4,blat.proc3829889.chain_1765	4
scaffold_3	alt_donor	6190086	6190087	-	asmbl_38863,asmbl_38866	none	STRG.3262.1,STRG.3262.3,blat.proc3829887.chain_3014,blat.proc3829887.chain_3015	4	blat.proc3829887.chain_3012	1
scaffold_21	alt_donor	8278548	8278549	+	asmbl_28820	none	STRG.24353.2	1	STRG.24353.1,STRG.24353.3	2
scaffold_16	alt_acceptor	8312923	8312924	+	asmbl_17187	none	STRG.19448.1,Trinity_GG_10650_c0_g1_i1,blat.proc3829881.chain_315	3	STRG.19448.2	1
scaffold_11	retained_exon	9829604	9830657	+	asmbl_5867	none	STRG.13996.3	1	STRG.13996.2,blat.proc3829877.chain_2508,blat.proc3829877.chain_2512	3
scaffold_23	starts_in_intron	10019996	10019996	+	asmbl_31119	none	Trinity_GG_14473_c1_g1_i1,blat.proc3829883.chain_3099	2	STRG.26185.1,blat.proc3829883.chain_3095,blat.proc3829883.chain_3096,blat.proc3829883.chain_3098	4
scaffold_8	retained_intron	6036917	6037004	+	asmbl_51917,asmbl_51918	none	Trinity_GG_5571_c0_g1_i2,Trinity_GG_5571_c0_g1_i3,blat.proc3829875.chain_2505,blat.proc3829875.chain_2507	4	STRG.10001.1,Trinity_GG_5571_c0_g1_i1,blat.proc3829875.chain_2508	3
scaffold_3	alt_acceptor	1767455	1767456	+	asmbl_39836	none	STRG.2990.3	1	STRG.2990.1	1
scaffold_1	spliced_intron	12407759	12407879	+	asmbl_2193	none	STRG.851.2,Trinity_GG_482_c0_g1_i4,blat.proc3829871.chain_855	3	STRG.851.1,Trinity_GG_482_c0_g1_i1,Trinity_GG_482_c0_g1_i2,Trinity_GG_482_c0_g1_i3,blat.proc3829871.chain_854,blat.proc3829871.chain_856,blat.proc3829871.chain_857	7
scaffold_1	alternate_exon	20135133	20135301	-	asmbl_1174	none	STRG.1381.5	1	STRG.1381.1,STRG.1381.2,STRG.1381.3	3
scaffold_7	spliced_intron	13552407	13554063	-	asmbl_50128	none	STRG.9466.1,blat.proc3829891.chain_1631	2	blat.proc3829891.chain_1630	1
scaffold_12	alt_donor	2272525	2272526	-	asmbl_7457	none	STRG.14479.1,blat.proc3829893.chain_2799	2	STRG.14479.2	1
scaffold_16	starts_in_intron	5754120	5754120	+	asmbl_17016	none	Trinity_GG_10568_c0_g1_i5,blat.proc3829881.chain_158	2	STRG.19307.1,STRG.19307.2,Trinity_GG_10568_c0_g1_i1,blat.proc3829881.chain_157,blat.proc3829881.chain_159,blat.proc3829881.chain_160	6
scaffold_3	alt_donor	14313224	14313225	-	asmbl_39297,asmbl_39298	none	STRG.3768.1,STRG.3768.2,Trinity_GG_19099_c0_g1_i4,blat.proc3829887.chain_3566,blat.proc3829887.chain_3567	5	STRG.3768.3	1
scaffold_21	alt_acceptor	2594134	2594135	+	asmbl_28426	none	STRG.23879.2	1	STRG.23879.1,blat.proc3829883.chain_1029	2
scaffold_2	retained_intron	9262531	9262914	-	asmbl_23388,asmbl_23390	none	STRG.2172.2,STRG.2172.3,blat.proc3829887.chain_2083	3	STRG.2172.1,blat.proc3829887.chain_2082	2
scaffold_15	alt_acceptor	8165664	8165665	+	asmbl_14267	none	STRG.18377.2	1	STRG.18377.1,blat.proc3829879.chain_3009,blat.proc3829879.chain_3010	3
scaffold_4	spliced_intron	5653074	5653166	-	asmbl_41352,asmbl_41354,asmbl_41355,asmbl_41357,asmbl_41359,asmbl_41363,asmbl_41365,asmbl_41366,asmbl_41368,asmbl_41369	none	STRG.4469.1,STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_606,blat.proc3829889.chain_608,blat.proc3829889.chain_611,blat.proc3829889.chain_612,blat.proc3829889.chain_613	10	blat.proc3829889.chain_604	1
scaffold_6	ends_in_intron	13168555	13168555	-	asmbl_48828	none	blat.proc3829891.chain_382	1	STRG.8067.1,blat.proc3829891.chain_381,blat.proc3829891.chain_383	3
scaffold_27	ends_in_intron	3130347	3130347	+	asmbl_36151,asmbl_36152,asmbl_36153	none	Trinity_GG_15900_c1_g1_i3,blat.proc3829885.chain_1768,blat.proc3829885.chain_1769,blat.proc3829885.chain_1770	4	STRG.28778.3	1
scaffold_1	spliced_intron	5746244	5746355	-	asmbl_303	none	STRG.372.1,blat.proc3829887.chain_251	2	blat.proc3829887.chain_252	1
scaffold_26	retained_intron	9844185	9844437	+	asmbl_35801,asmbl_35804,asmbl_35805,asmbl_35807,asmbl_35808,asmbl_35809,asmbl_35810,asmbl_35811,asmbl_35813,asmbl_35814,asmbl_35815,asmbl_35817	none	STRG.28526.1,STRG.28526.3,STRG.28526.5,blat.proc3829885.chain_1557,blat.proc3829885.chain_1558,blat.proc3829885.chain_1559,blat.proc3829885.chain_1560,blat.proc3829885.chain_1561,blat.proc3829885.chain_1562,blat.proc3829885.chain_1563,blat.proc3829885.chain_1565,blat.proc3829885.chain_1566,blat.proc3829885.chain_1567	13	STRG.28526.2,blat.proc3829885.chain_1556,blat.proc3829885.chain_1564	3
scaffold_27	retained_intron	3624875	3625095	+	asmbl_36176	none	Trinity_GG_15953_c0_g1_i4,Trinity_GG_15953_c0_g1_i6,blat.proc3829885.chain_1906,blat.proc3829885.chain_1907	4	STRG.28811.1,Trinity_GG_15953_c0_g1_i2,blat.proc3829885.chain_1904,blat.proc3829885.chain_1905	4
scaffold_17	retained_exon	2740686	2740806	-	asmbl_18825	none	STRG.20064.1,blat.proc3829897.chain_1038	2	STRG.20064.3	1
scaffold_25	ends_in_intron	9560251	9560251	-	asmbl_34480	none	Trinity_GG_32562_c0_g1_i9,blat.proc3829901.chain_1035	2	STRG.27753.1,blat.proc3829901.chain_1036,blat.proc3829901.chain_1037	3
scaffold_17	alt_acceptor	14325639	14325640	-	asmbl_19470	none	STRG.20895.2,Trinity_GG_28739_c0_g1_i1,blat.proc3829897.chain_1797	3	blat.proc3829897.chain_1795	1
scaffold_6	ends_in_intron	10750048	10750048	+	asmbl_47234	none	blat.proc3829875.chain_278	1	STRG.7886.1,blat.proc3829875.chain_281	2
scaffold_10	ends_in_intron	975291	975291	-	asmbl_2938	none	Trinity_GG_23642_c0_g1_i5,blat.proc3829893.chain_361	2	STRG.11970.2,Trinity_GG_23642_c0_g1_i4	2
scaffold_23	spliced_intron	4899125	4899400	+	asmbl_30834	none	STRG.25862.2,Trinity_GG_14276_c0_g1_i4,blat.proc3829883.chain_2747	3	STRG.25862.3	1
scaffold_13	alt_donor	2375906	2375907	-	asmbl_9415	none	STRG.15538.3,blat.proc3829895.chain_294	2	STRG.15538.1,STRG.15538.2,STRG.15538.4,blat.proc3829895.chain_295,blat.proc3829895.chain_296	5
scaffold_2	starts_in_intron	4592022	4592022	+	asmbl_24388	none	Trinity_GG_1048_c0_g1_i1,blat.proc3829871.chain_1925	2	STRG.1883.1,blat.proc3829871.chain_1924	2
scaffold_7	retained_intron	8507767	8508686	+	asmbl_50885,asmbl_50891	none	STRG.9068.2,blat.proc3829875.chain_1530	2	STRG.9068.4,STRG.9068.5,blat.proc3829875.chain_1525,blat.proc3829875.chain_1526	4
scaffold_17	spliced_intron	1360485	1360559	-	asmbl_18749,asmbl_18750	none	STRG.19961.1,blat.proc3829897.chain_917	2	blat.proc3829897.chain_916	1
scaffold_27	alt_donor	5671484	5671485	-	asmbl_36970	none	STRG.28954.1,blat.proc3829901.chain_2131	2	blat.proc3829901.chain_2130	1
scaffold_9	alt_acceptor	2799124	2799125	+	asmbl_53842	none	STRG.10912.1,Trinity_GG_6054_c0_g1_i2,blat.proc3829875.chain_3365,blat.proc3829875.chain_3372	4	STRG.10912.2,Trinity_GG_6054_c0_g1_i7,blat.proc3829875.chain_3369	3
scaffold_17	alternate_exon	1304836	1304956	+	asmbl_17728	none	STRG.19955.1,blat.proc3829881.chain_800	2	STRG.19955.2	1
scaffold_3	starts_in_intron	7592346	7592346	+	asmbl_40126	none	Trinity_GG_1911_c0_g1_i1,blat.proc3829871.chain_3546	2	STRG.3345.1,blat.proc3829871.chain_3547,blat.proc3829871.chain_3548	3
scaffold_18	starts_in_intron	154923	154923	+	asmbl_20289	none	blat.proc3829881.chain_1806	1	STRG.20958.1,Trinity_GG_11528_c0_g1_i1,blat.proc3829881.chain_1805	3
scaffold_4	alt_acceptor	17580543	17580544	+	asmbl_43405	none	STRG.5347.5	1	STRG.5347.2	1
scaffold_1	ends_in_intron	969594	969594	-	asmbl_40	none	Trinity_GG_17049_c1_g1_i4,blat.proc3829885.chain_3719	2	STRG.57.1,STRG.57.2,Trinity_GG_17049_c1_g1_i1,Trinity_GG_17049_c1_g1_i2,blat.proc3829885.chain_3720,blat.proc3829885.chain_3722	6
scaffold_9	retained_intron	3413981	3414140	-	asmbl_54865	none	blat.proc3829891.chain_3121,blat.proc3829891.chain_3123	2	STRG.10946.3,blat.proc3829891.chain_3124	2
scaffold_18	spliced_intron	2535900	2536164	+	asmbl_20436	none	STRG.21112.1,Trinity_GG_11605_c0_g1_i1,blat.proc3829881.chain_1962	3	STRG.21112.2	1
scaffold_14	skipped_exon	3156204	3157076	+	asmbl_11879,asmbl_11880,asmbl_11881,asmbl_11885,asmbl_11889,asmbl_11890,asmbl_11893,asmbl_11895,asmbl_11896,asmbl_11897	none	STRG.16893.1,blat.proc3829879.chain_1626,blat.proc3829879.chain_1630,blat.proc3829879.chain_1631,blat.proc3829879.chain_1632,blat.proc3829879.chain_1633,blat.proc3829879.chain_1634,blat.proc3829879.chain_1635,blat.proc3829879.chain_1636,blat.proc3829879.chain_1638,blat.proc3829879.chain_1640	11	STRG.16893.2,STRG.16893.3,blat.proc3829879.chain_1625,blat.proc3829879.chain_1628,blat.proc3829879.chain_1629,blat.proc3829879.chain_1637,blat.proc3829879.chain_1639	7
scaffold_17	alternate_exon	541591	543555	+	asmbl_17679	none	STRG.19891.3	1	blat.proc3829881.chain_736	1
scaffold_15	alternate_exon	2782594	2782814	-	asmbl_15058	none	STRG.18054.2	1	STRG.18054.1	1
scaffold_2	starts_in_intron	17445909	17445909	-	asmbl_23737	none	STRG.2626.2	1	STRG.2626.1	1
scaffold_5	spliced_intron	19648196	19648470	+	asmbl_44982	none	STRG.7045.2	1	STRG.7045.1,Trinity_GG_3864_c0_g1_i2,Trinity_GG_3864_c0_g1_i3,Trinity_GG_3864_c0_g1_i4,blat.proc3829873.chain_3172,blat.proc3829873.chain_3173,blat.proc3829873.chain_3174	7
scaffold_11	ends_in_intron	15188367	15188367	-	asmbl_7171	none	STRG.14276.2,blat.proc3829893.chain_2705	2	STRG.14276.1,blat.proc3829893.chain_2704	2
scaffold_11	spliced_intron	9018786	9019232	-	asmbl_6885,asmbl_6886,asmbl_6888,asmbl_6889,asmbl_6890	none	STRG.13926.1,STRG.13926.2,blat.proc3829893.chain_2276,blat.proc3829893.chain_2277,blat.proc3829893.chain_2278,blat.proc3829893.chain_2279	6	Trinity_GG_24749_c0_g2_i1,blat.proc3829893.chain_2280	2
scaffold_14	retained_intron	11391513	11391625	-	asmbl_13461,asmbl_13462,asmbl_13464,asmbl_13465	none	STRG.17457.1,STRG.17457.3,STRG.17457.4,blat.proc3829895.chain_2095,blat.proc3829895.chain_2096,blat.proc3829895.chain_2098	6	STRG.17457.2,Trinity_GG_26751_c0_g1_i5,blat.proc3829895.chain_2097	3
scaffold_8	skipped_exon	14786	15882	-	asmbl_52670	none	STRG.9692.3,blat.proc3829891.chain_1960,blat.proc3829891.chain_1962	3	STRG.9692.2,blat.proc3829891.chain_1959	2
scaffold_3	alt_donor	12577627	12577628	+	asmbl_40365	none	blat.proc3829873.chain_68	1	STRG.3651.1,blat.proc3829873.chain_67	2
scaffold_18	alt_donor	1328476	1328477	+	asmbl_20362	none	STRG.21011.3	1	STRG.21011.1,STRG.21011.2,blat.proc3829881.chain_1877,blat.proc3829881.chain_1878,blat.proc3829881.chain_1880	5
scaffold_2	alt_acceptor	15457506	15457507	-	asmbl_23641	none	STRG.2501.2	1	STRG.2501.1,blat.proc3829887.chain_2316	2
scaffold_15	starts_in_intron	949668	949668	+	asmbl_13929	none	Trinity_GG_9848_c0_g1_i2,blat.proc3829879.chain_2589	2	STRG.17919.1,Trinity_GG_9848_c0_g1_i1,blat.proc3829879.chain_2590	3
scaffold_12	starts_in_intron	15267487	15267487	-	asmbl_8201,asmbl_8203	none	STRG.15320.2,blat.proc3829895.chain_53	2	STRG.15320.1,STRG.15320.3,STRG.15320.4,STRG.15320.5,Trinity_GG_25603_c0_g1_i1,Trinity_GG_25603_c0_g1_i3,blat.proc3829895.chain_52,blat.proc3829895.chain_54	8
scaffold_27	retained_intron	313987	314458	-	asmbl_36613,asmbl_36614	none	Trinity_GG_32948_c0_g1_i13,blat.proc3829901.chain_1673	2	blat.proc3829901.chain_1671	1
scaffold_11	ends_in_intron	1889588	1889588	+	asmbl_5304	none	blat.proc3829877.chain_1831	1	STRG.13341.1,blat.proc3829877.chain_1830	2
scaffold_12	starts_in_intron	13036142	13036142	-	asmbl_8038	none	Trinity_GG_25488_c0_g1_i1,blat.proc3829893.chain_3574	2	STRG.15174.1,Trinity_GG_25488_c0_g1_i2,blat.proc3829893.chain_3573	3
scaffold_19	starts_in_intron	8111533	8111533	-	asmbl_21481	none	blat.proc3829897.chain_2981	1	STRG.22251.1,blat.proc3829897.chain_2980	2
scaffold_18	starts_in_intron	7741114	7741114	-	asmbl_20013	none	blat.proc3829897.chain_2321	1	STRG.21470.1,blat.proc3829897.chain_2320	2
scaffold_5	skipped_exon	12728011	12729165	-	asmbl_45857	none	STRG.6497.3	1	STRG.6497.1	1
scaffold_8	retained_intron	6028315	6028414	+	asmbl_51915	none	blat.proc3829875.chain_2551	1	Trinity_GG_5590_c1_g1_i6,blat.proc3829875.chain_2552,blat.proc3829875.chain_2553,blat.proc3829875.chain_2554,blat.proc3829875.chain_2555	5
scaffold_18	retained_exon	8726426	8726673	+	asmbl_20888	none	blat.proc3829881.chain_2484	1	STRG.21533.4	1
scaffold_25	retained_intron	5696565	5696676	-	asmbl_34255	none	blat.proc3829901.chain_777	1	STRG.27451.1,blat.proc3829901.chain_776,blat.proc3829901.chain_779	3
scaffold_16	spliced_intron	325094	325177	-	asmbl_16025,asmbl_16027,asmbl_16028,asmbl_16029	none	STRG.19019.1,STRG.19019.2,blat.proc3829897.chain_59,blat.proc3829897.chain_62	4	blat.proc3829897.chain_58	1
scaffold_7	retained_intron	4391769	4391853	+	asmbl_50612,asmbl_50614	none	Trinity_GG_4787_c0_g1_i1,blat.proc3829875.chain_1131	2	Trinity_GG_4787_c0_g1_i2,blat.proc3829875.chain_1130	2
scaffold_6	spliced_intron	13064215	13064365	-	asmbl_48811	none	STRG.8056.2	1	STRG.8056.1,STRG.8056.3,STRG.8056.4,blat.proc3829891.chain_351	4
scaffold_16	alt_donor	1510638	1510639	+	asmbl_16872	none	STRG.19088.3	1	STRG.19088.2,blat.proc3829879.chain_3697	2
scaffold_6	starts_in_intron	7172496	7172496	+	asmbl_46987	none	Trinity_GG_4175_c2_g1_i1,blat.proc3829873.chain_3741	2	STRG.7621.1,STRG.7621.2,STRG.7621.3,STRG.7621.4,blat.proc3829873.chain_3739	5
scaffold_3	alternate_exon	17360610	17360689	-	asmbl_39491	none	STRG.3964.1,blat.proc3829887.chain_3706	2	STRG.3964.2	1
scaffold_16	ends_in_intron	6534208	6534208	+	asmbl_17107	none	Trinity_GG_10611_c0_g1_i5,blat.proc3829881.chain_249	2	STRG.19359.1,STRG.19359.2,Trinity_GG_10611_c0_g1_i1,Trinity_GG_10611_c0_g1_i3,Trinity_GG_10611_c0_g1_i4,blat.proc3829881.chain_250,blat.proc3829881.chain_251,blat.proc3829881.chain_252	8
scaffold_16	ends_in_intron	9923502	9923502	-	asmbl_16481	none	STRG.19567.2,blat.proc3829897.chain_572	2	STRG.19567.1,blat.proc3829897.chain_573	2
scaffold_1	alt_acceptor	13883303	13883304	-	asmbl_858,asmbl_859,asmbl_860,asmbl_863	none	STRG.993.1,STRG.993.2,STRG.993.3,STRG.993.4,blat.proc3829887.chain_867,blat.proc3829887.chain_868	6	STRG.993.5,blat.proc3829887.chain_866	2
scaffold_10	alt_donor	6324125	6324126	-	asmbl_3365,asmbl_3366	none	STRG.12453.1,STRG.12453.2,blat.proc3829893.chain_879,blat.proc3829893.chain_880	4	STRG.12453.3	1
scaffold_19	starts_in_intron	2944494	2944494	+	asmbl_22096	none	blat.proc3829881.chain_2856	1	STRG.21973.1,Trinity_GG_12107_c1_g1_i2,blat.proc3829881.chain_2855	3
scaffold_18	alternate_exon	814944	815142	+	asmbl_20348	none	blat.proc3829881.chain_1864	1	STRG.20995.1,blat.proc3829881.chain_1868,blat.proc3829881.chain_1869	3
scaffold_27	alternate_exon	3404789	3404880	+	asmbl_36161	none	STRG.28794.2	1	STRG.28794.1,Trinity_GG_15929_c0_g1_i1,blat.proc3829885.chain_1872	3
scaffold_10	starts_in_intron	3930373	3930373	-	asmbl_3159	none	blat.proc3829893.chain_693	1	STRG.12230.1,blat.proc3829893.chain_694	2
scaffold_9	starts_in_intron	3673669	3673669	-	asmbl_54888	none	blat.proc3829891.chain_3088	1	STRG.10971.1,STRG.10971.3,blat.proc3829891.chain_3074,blat.proc3829891.chain_3078,blat.proc3829891.chain_3082,blat.proc3829891.chain_3084,blat.proc3829891.chain_3085	7
scaffold_589	retained_intron	2439	2833	-	asmbl_46569	none	STRG.30367.1,Trinity_GG_10757_c1_g1_i2,blat.proc3829901.chain_3421	3	STRG.30367.2	1
scaffold_16	alt_donor	2215052	2215053	+	asmbl_16913,asmbl_16914	none	blat.proc3829879.chain_3744,blat.proc3829879.chain_3746	2	STRG.19114.1,Trinity_GG_10490_c0_g1_i2,blat.proc3829879.chain_3745	3
scaffold_26	spliced_intron	4109409	4109599	+	asmbl_35386,asmbl_35387	none	STRG.28091.1,STRG.28091.2,blat.proc3829885.chain_967	3	STRG.28091.3	1
scaffold_13	retained_exon	16437298	16437381	+	asmbl_11558	none	blat.proc3829879.chain_1410	1	STRG.16684.1,STRG.16684.2,Trinity_GG_9187_c0_g1_i6,blat.proc3829879.chain_1411	4
scaffold_13	alternate_exon	11599669	11599898	+	asmbl_11270	none	STRG.16295.4,blat.proc3829879.chain_1022	2	STRG.16295.1,STRG.16295.3,blat.proc3829879.chain_1014,blat.proc3829879.chain_1018,blat.proc3829879.chain_1019	5
scaffold_8	starts_in_intron	6036790	6036790	+	asmbl_51918	none	Trinity_GG_5571_c0_g1_i2,blat.proc3829875.chain_2507	2	STRG.10001.1,Trinity_GG_5571_c0_g1_i1,Trinity_GG_5571_c0_g1_i3,blat.proc3829875.chain_2505,blat.proc3829875.chain_2506,blat.proc3829875.chain_2508	6
scaffold_1	skipped_exon	11173731	11174990	+	asmbl_2074,asmbl_2075	none	STRG.743.2,blat.proc3829871.chain_814	2	STRG.743.5,blat.proc3829871.chain_824	2
scaffold_5	spliced_intron	18561018	18561149	+	asmbl_44920,asmbl_44922,asmbl_44924,asmbl_44926,asmbl_44927	none	STRG.6978.1,STRG.6978.2,STRG.6978.3,STRG.6978.4,Trinity_GG_3847_c0_g1_i2,blat.proc3829873.chain_3147,blat.proc3829873.chain_3148,blat.proc3829873.chain_3150	8	Trinity_GG_3847_c0_g1_i4,blat.proc3829873.chain_3145	2
scaffold_19	ends_in_intron	2781238	2781238	+	asmbl_22079	none	Trinity_GG_12146_c0_g1_i7,blat.proc3829881.chain_2910	2	STRG.21950.1,STRG.21950.2,STRG.21950.3,STRG.21950.4,STRG.21950.5,blat.proc3829881.chain_2913	6
scaffold_2	alt_donor	10170251	10170252	-	asmbl_23421	none	STRG.2206.3	1	STRG.2206.2,Trinity_GG_18253_c1_g1_i5,blat.proc3829887.chain_2121	3
scaffold_26	alt_acceptor	1322127	1322128	-	asmbl_34678	none	blat.proc3829901.chain_1142	1	STRG.27898.2,STRG.27898.3,blat.proc3829901.chain_1144	3
scaffold_4	skipped_exon	19752549	19753056	+	asmbl_43505,asmbl_43507	none	STRG.5561.2,STRG.5561.3,Trinity_GG_3042_c0_g1_i1,blat.proc3829873.chain_1752	4	STRG.5561.1,Trinity_GG_3042_c0_g1_i2,blat.proc3829873.chain_1753	3
scaffold_3	spliced_intron	10275684	10275967	+	asmbl_40205	none	STRG.3461.2,blat.proc3829871.chain_3625	2	blat.proc3829871.chain_3623	1
scaffold_27	retained_exon	2814732	2814833	+	asmbl_36082	none	STRG.28742.3	1	STRG.28742.1,STRG.28742.2,STRG.28742.4,blat.proc3829885.chain_1799,blat.proc3829885.chain_1801,blat.proc3829885.chain_1802,blat.proc3829885.chain_1803	7
scaffold_11	alternate_exon	4772001	4772166	-	asmbl_6611	none	STRG.13560.1,blat.proc3829893.chain_1977	2	STRG.13560.2	1
scaffold_13	retained_intron	4378784	4378885	+	asmbl_10765	none	Trinity_GG_8637_c0_g1_i7,blat.proc3829879.chain_406	2	STRG.15749.1,STRG.15749.2,STRG.15749.3,blat.proc3829879.chain_404	4
scaffold_4	alt_acceptor	12793645	12793646	+	asmbl_43082	none	STRG.4920.4,Trinity_GG_2752_c0_g1_i6,blat.proc3829873.chain_1271	3	STRG.4920.1,STRG.4920.2,STRG.4920.3,blat.proc3829873.chain_1273,blat.proc3829873.chain_1274,blat.proc3829873.chain_1275,blat.proc3829873.chain_1276	7
scaffold_10	skipped_exon	1491398	1494142	-	asmbl_2978	none	STRG.12017.2,blat.proc3829893.chain_390	2	STRG.12017.1,STRG.12017.3,blat.proc3829893.chain_389,blat.proc3829893.chain_392,blat.proc3829893.chain_394	5
scaffold_18	alternate_exon	7866960	7867030	-	asmbl_20018	none	STRG.21476.1,blat.proc3829897.chain_2331	2	blat.proc3829897.chain_2330	1
scaffold_21	alternate_exon	2947913	2948027	-	asmbl_27522	none	STRG.23903.3	1	STRG.23903.1,Trinity_GG_30331_c0_g1_i3,blat.proc3829899.chain_969,blat.proc3829899.chain_971	4
scaffold_8	starts_in_intron	9468693	9468693	-	asmbl_53035	none	blat.proc3829891.chain_2407	1	STRG.10197.1,blat.proc3829891.chain_2400,blat.proc3829891.chain_2402,blat.proc3829891.chain_2405,blat.proc3829891.chain_2406,blat.proc3829891.chain_2408	6
scaffold_11	spliced_intron	175992	176605	+	asmbl_5223,asmbl_5224	none	STRG.13233.1,blat.proc3829877.chain_1766,blat.proc3829877.chain_1769	3	STRG.13233.2,blat.proc3829877.chain_1767,blat.proc3829877.chain_1768	3
scaffold_21	retained_intron	7502207	7502569	-	asmbl_27849,asmbl_27851,asmbl_27853	none	STRG.24269.1,STRG.24269.3,blat.proc3829899.chain_1355,blat.proc3829899.chain_1356,blat.proc3829899.chain_1357	5	STRG.24269.2,blat.proc3829899.chain_1354	2
scaffold_24	alt_acceptor	9088045	9088046	+	asmbl_32507	none	STRG.26930.2	1	STRG.26930.1,STRG.26930.3,STRG.26930.4,blat.proc3829885.chain_81,blat.proc3829885.chain_82,blat.proc3829885.chain_84	6
scaffold_5	starts_in_intron	6848912	6848912	+	asmbl_44114	none	Trinity_GG_3302_c0_g1_i2,blat.proc3829873.chain_2197	2	STRG.6086.1,blat.proc3829873.chain_2198,blat.proc3829873.chain_2199	3
scaffold_18	spliced_intron	2050891	2050940	-	asmbl_19730	none	STRG.21084.2	1	Trinity_GG_28833_c0_g1_i2,blat.proc3829897.chain_1992	2
scaffold_17	retained_exon	7101487	7101709	+	asmbl_18025	none	STRG.20368.1,blat.proc3829881.chain_1135	2	STRG.20368.2,blat.proc3829881.chain_1136	2
scaffold_8	retained_intron	11744324	11744678	+	asmbl_52248	none	STRG.10369.2,blat.proc3829875.chain_2911	2	STRG.10369.1,blat.proc3829875.chain_2910	2
scaffold_18	alternate_exon	2818703	2832888	+	asmbl_20448	none	STRG.21133.2,blat.proc3829881.chain_1915,blat.proc3829881.chain_1923,blat.proc3829881.chain_1927	4	STRG.21133.4,STRG.21133.5,blat.proc3829881.chain_1914,blat.proc3829881.chain_1917	4
scaffold_14	ends_in_intron	13224510	13224510	+	asmbl_12447,asmbl_12449,asmbl_12450,asmbl_12451,asmbl_12452,asmbl_12453	none	STRG.17600.1,STRG.17600.2,STRG.17600.3,STRG.17600.5,STRG.17600.6,blat.proc3829879.chain_2201,blat.proc3829879.chain_2202,blat.proc3829879.chain_2203	8	STRG.17600.4,blat.proc3829879.chain_2205	2
scaffold_5	alternate_exon	6564316	6564451	+	asmbl_44094	none	STRG.6047.1,blat.proc3829873.chain_2179,blat.proc3829873.chain_2181	3	STRG.6047.3	1
scaffold_14	alt_acceptor	11639565	11639566	+	asmbl_12377	none	STRG.17482.1	1	STRG.17482.2	1
scaffold_5	spliced_intron	6629852	6630029	-	asmbl_45509,asmbl_45510	none	STRG.6058.2,blat.proc3829889.chain_2095	2	STRG.6058.1,blat.proc3829889.chain_2094	2
scaffold_27	alt_acceptor	4765476	4765477	-	asmbl_36919	none	STRG.28894.1,blat.proc3829901.chain_2015	2	STRG.28894.2	1
scaffold_21	alternate_exon	7937501	7937647	-	asmbl_27889	none	Trinity_GG_30562_c0_g1_i1,blat.proc3829899.chain_1373	2	blat.proc3829899.chain_1372	1
scaffold_4	starts_in_intron	2740902	2740902	-	asmbl_41144	none	blat.proc3829889.chain_283	1	STRG.4236.1,blat.proc3829889.chain_281	2
scaffold_27	alt_acceptor	4939552	4939553	+	asmbl_36283,asmbl_36284,asmbl_36287,asmbl_36288	none	STRG.28914.1,STRG.28914.3,STRG.28914.4,STRG.28914.5	4	STRG.28914.2,STRG.28914.6,blat.proc3829885.chain_2065,blat.proc3829885.chain_2066	4
scaffold_6	retained_intron	13871424	13871524	+	asmbl_47478	none	STRG.8125.3,Trinity_GG_21655_c0_g1_i3,Trinity_GG_4470_c0_g1_i6,blat.proc3829875.chain_559,blat.proc3829891.chain_485	5	STRG.8125.1,Trinity_GG_21655_c0_g1_i1,Trinity_GG_4470_c0_g1_i1,Trinity_GG_4470_c0_g1_i5,blat.proc3829875.chain_560,blat.proc3829875.chain_562,blat.proc3829891.chain_484	7
scaffold_13	retained_exon	903026	903309	-	asmbl_9347	none	blat.proc3829895.chain_216	1	STRG.15448.1,STRG.15448.3,STRG.15448.4,STRG.15448.5,STRG.15448.6,blat.proc3829895.chain_212,blat.proc3829895.chain_213,blat.proc3829895.chain_214,blat.proc3829895.chain_215	9
scaffold_8	alt_acceptor	10793555	10793556	+	asmbl_52169	none	STRG.10300.2,blat.proc3829875.chain_2821	2	STRG.10300.3,blat.proc3829875.chain_2820	2
scaffold_16	spliced_intron	7910151	7910238	+	asmbl_17158	none	STRG.19432.1,Trinity_GG_10619_c0_g1_i2,blat.proc3829881.chain_261	3	Trinity_GG_10619_c0_g1_i1,blat.proc3829881.chain_260,blat.proc3829881.chain_262	3
scaffold_2	starts_in_intron	482054	482054	-	asmbl_22832	none	blat.proc3829887.chain_1415	1	STRG.1533.1,STRG.1533.2,STRG.1533.3,blat.proc3829887.chain_1416	4
scaffold_5	skipped_exon	8132404	8133608	+	asmbl_44192	none	STRG.6170.2,blat.proc3829873.chain_2321	2	STRG.6170.1,blat.proc3829873.chain_2319	2
scaffold_9	spliced_intron	14818996	14819580	-	asmbl_55465,asmbl_55466,asmbl_55468	none	STRG.11693.2,STRG.11693.7,blat.proc3829893.chain_8	3	blat.proc3829893.chain_5	1
scaffold_17	retained_intron	11567714	11567734	+	asmbl_18359,asmbl_18360,asmbl_18361	none	STRG.20693.1,STRG.20693.3,STRG.20693.4	3	blat.proc3829881.chain_1479	1
scaffold_5	alt_acceptor	10983782	10983783	+	asmbl_44390	none	STRG.6368.1	1	STRG.6368.2	1
scaffold_10	spliced_intron	715906	716550	-	asmbl_2904,asmbl_2909	none	STRG.11948.1,Trinity_GG_23680_c0_g1_i7,blat.proc3829893.chain_434,blat.proc3829893.chain_438	4	STRG.11948.2,Trinity_GG_23680_c0_g1_i4,Trinity_GG_23680_c0_g1_i6,blat.proc3829893.chain_435,blat.proc3829893.chain_436	5
scaffold_12	retained_intron	16403693	16404417	+	asmbl_9132,asmbl_9133,asmbl_9135	none	STRG.15385.3,STRG.15385.4,STRG.15385.6,Trinity_GG_8419_c0_g2_i1,blat.proc3829877.chain_3739	5	STRG.15385.1,STRG.15385.2,STRG.15385.5,Trinity_GG_8419_c0_g1_i3,Trinity_GG_8419_c0_g1_i7,blat.proc3829877.chain_3732,blat.proc3829877.chain_3737,blat.proc3829877.chain_3738	8
scaffold_1	alt_acceptor	9327714	9327715	+	asmbl_1976	none	STRG.632.2	1	STRG.632.1	1
scaffold_14	alt_acceptor	15565734	15565735	+	asmbl_12607	none	STRG.17784.2	1	STRG.17784.3	1
scaffold_27	alternate_exon	2997707	2997749	+	asmbl_36119,asmbl_36121	none	STRG.28767.5,blat.proc3829885.chain_1839	2	STRG.28767.1,STRG.28767.2,STRG.28767.3,Trinity_GG_15918_c0_g1_i12,blat.proc3829885.chain_1840,blat.proc3829885.chain_1842,blat.proc3829885.chain_1843,blat.proc3829885.chain_1845,blat.proc3829885.chain_1848,blat.proc3829885.chain_1849	10
scaffold_5	spliced_intron	10303566	10303683	-	asmbl_45726,asmbl_45727	none	STRG.6325.1,blat.proc3829889.chain_2403,blat.proc3829889.chain_2404,blat.proc3829889.chain_2405,blat.proc3829889.chain_2406,blat.proc3829889.chain_2408	6	blat.proc3829889.chain_2407	1
scaffold_1	alt_acceptor	13060223	13060224	-	asmbl_794	none	STRG.940.1,blat.proc3829887.chain_832	2	STRG.940.2	1
scaffold_7	alt_donor	12420893	12420894	+	asmbl_51140	none	STRG.9335.2,blat.proc3829875.chain_1793	2	STRG.9335.1,blat.proc3829875.chain_1794	2
scaffold_8	ends_in_intron	1833806	1833806	+	asmbl_51702	none	Trinity_GG_5441_c1_g2_i1	1	blat.proc3829875.chain_2264,blat.proc3829875.chain_2265	2
scaffold_1	alt_acceptor	18485288	18485289	-	asmbl_1106	none	STRG.1300.2,blat.proc3829887.chain_1210	2	STRG.1300.3	1
scaffold_9	alternate_exon	11829318	11829387	-	asmbl_55283	none	blat.proc3829891.chain_3582	1	STRG.11487.1,STRG.11487.2	2
scaffold_15	starts_in_intron	10649275	10649275	-	asmbl_15460,asmbl_15462	none	STRG.18545.2,blat.proc3829895.chain_3323	2	STRG.18545.1,STRG.18545.3,blat.proc3829895.chain_3320,blat.proc3829895.chain_3321	4
scaffold_14	retained_intron	12351231	12351424	+	asmbl_12408	none	blat.proc3829879.chain_2236	1	STRG.17560.1,STRG.17560.2,blat.proc3829879.chain_2238	3
scaffold_21	retained_intron	7286601	7286692	-	asmbl_27814	none	STRG.24234.2	1	STRG.24234.1,STRG.24234.3,Trinity_GG_30523_c0_g1_i1,Trinity_GG_30523_c0_g1_i2,blat.proc3829899.chain_1301,blat.proc3829899.chain_1302	6
scaffold_18	ends_in_intron	7644502	7644502	-	asmbl_19997	none	Trinity_GG_29021_c0_g1_i11,blat.proc3829897.chain_2315	2	STRG.21453.1,STRG.21453.2,STRG.21453.3,STRG.21453.4,STRG.21453.5,Trinity_GG_29021_c0_g1_i10,Trinity_GG_29021_c0_g1_i8,blat.proc3829897.chain_2308,blat.proc3829897.chain_2309,blat.proc3829897.chain_2310,blat.proc3829897.chain_2311,blat.proc3829897.chain_2313,blat.proc3829897.chain_2314	13
scaffold_23	ends_in_intron	7685757	7685757	+	asmbl_31006	none	STRG.26063.2,blat.proc3829883.chain_2983	2	STRG.26063.1,STRG.26063.3,STRG.26063.5,Trinity_GG_14406_c0_g1_i3,Trinity_GG_14406_c0_g1_i4,blat.proc3829883.chain_2977,blat.proc3829883.chain_2978	7
scaffold_24	alt_donor	1064662	1064663	+	asmbl_32073	none	STRG.26360.4,blat.proc3829883.chain_3295	2	STRG.26360.2,Trinity_GG_14583_c0_g1_i2,blat.proc3829883.chain_3293	3
scaffold_1	alternate_exon	12930302	12930378	+	asmbl_2265	none	STRG.922.1	1	STRG.922.2,Trinity_GG_546_c0_g1_i2,blat.proc3829871.chain_979	3
scaffold_6	ends_in_intron	2520584	2520584	-	asmbl_48084	none	Trinity_GG_21053_c0_g1_i1,blat.proc3829889.chain_3214	2	STRG.7245.2	1
scaffold_6	alternate_exon	17646697	17646892	-	asmbl_49128	none	STRG.8448.3,Trinity_GG_21817_c0_g1_i1,blat.proc3829891.chain_745	3	STRG.8448.1	1
scaffold_4	retained_intron	4094067	4094177	+	asmbl_42547,asmbl_42548	none	Trinity_GG_2386_c0_g1_i14,blat.proc3829873.chain_633,blat.proc3829873.chain_640	3	STRG.4313.1,STRG.4313.2,STRG.4313.3,STRG.4313.4,STRG.4313.5,blat.proc3829873.chain_635,blat.proc3829873.chain_636,blat.proc3829873.chain_638	8
scaffold_25	retained_intron	1432432	1432523	+	asmbl_33363	none	STRG.27159.4	1	blat.proc3829901.chain_470	1
scaffold_17	alternate_exon	9006970	9007838	+	asmbl_18181	none	STRG.20513.1,blat.proc3829881.chain_1321	2	STRG.20513.2,STRG.20513.3,blat.proc3829881.chain_1319	3
scaffold_9	starts_in_intron	9663754	9663754	-	asmbl_55194	none	blat.proc3829891.chain_3505	1	STRG.11333.1,blat.proc3829891.chain_3506	2
scaffold_4	starts_in_intron	7395980	7395980	-	asmbl_41457	none	blat.proc3829889.chain_626	1	STRG.4591.1,blat.proc3829889.chain_625	2
scaffold_12	spliced_intron	5140448	5141695	-	asmbl_7618	none	blat.proc3829893.chain_3084	1	STRG.14677.1,Trinity_GG_25205_c0_g1_i1,blat.proc3829893.chain_3085,blat.proc3829893.chain_3087	4
scaffold_9	alternate_exon	16739206	16739491	-	asmbl_55584	none	STRG.11811.1,Trinity_GG_23557_c0_g1_i2,blat.proc3829893.chain_220	3	STRG.11811.2,STRG.11811.3,Trinity_GG_23557_c0_g1_i6,blat.proc3829893.chain_219	4
scaffold_6	starts_in_intron	3285647	3285647	-	asmbl_48185	none	blat.proc3829889.chain_3355	1	STRG.7327.1,STRG.7327.2,STRG.7327.3,blat.proc3829889.chain_3353	4
scaffold_8	alternate_exon	10144865	10144904	+	asmbl_52138	none	blat.proc3829875.chain_2666	1	STRG.10261.1,Trinity_GG_5649_c0_g1_i2,blat.proc3829875.chain_2667	3
scaffold_22	retained_exon	10238117	10238146	-	asmbl_30357	none	STRG.25350.1,blat.proc3829899.chain_2421	2	STRG.25350.2,STRG.25350.3,blat.proc3829899.chain_2420	3
scaffold_17	alt_acceptor	7469888	7469889	+	asmbl_18038	none	STRG.20384.2	1	STRG.20384.1,blat.proc3829881.chain_1150	2
scaffold_506	retained_intron	2749	3028	+	asmbl_46457	none	blat.proc3829885.chain_3371	1	STRG.30329.2,blat.proc3829885.chain_3372	2
scaffold_19	ends_in_intron	2246882	2246882	-	asmbl_21258	none	blat.proc3829897.chain_2712	1	blat.proc3829897.chain_2713	1
scaffold_7	alt_acceptor	10710436	10710437	+	asmbl_51022	none	STRG.9238.2	1	STRG.9238.1,blat.proc3829875.chain_1704	2
scaffold_26	skipped_exon	5894384	5894720	-	asmbl_34918	none	STRG.28281.3	1	STRG.28281.1,STRG.28281.2,blat.proc3829901.chain_1395,blat.proc3829901.chain_1396,blat.proc3829901.chain_1397	5
scaffold_4	spliced_intron	6332069	6332164	+	asmbl_42729	none	Trinity_GG_2462_c1_g1_i2,blat.proc3829873.chain_811	2	STRG.4501.1,Trinity_GG_2462_c1_g1_i1,blat.proc3829873.chain_810	3
scaffold_17	alternate_exon	8219598	8220292	+	asmbl_18078,asmbl_18086	none	STRG.20435.1,blat.proc3829881.chain_1198,blat.proc3829881.chain_1200	3	STRG.20435.3	1
scaffold_6	alt_donor	4383275	4383276	-	asmbl_48259	none	STRG.7407.2	1	STRG.7407.1,blat.proc3829889.chain_3385	2
scaffold_2	ends_in_intron	4018647	4018647	-	asmbl_23065	none	blat.proc3829887.chain_1707	1	STRG.1843.1,blat.proc3829887.chain_1706	2
scaffold_11	spliced_intron	13462843	13463131	-	asmbl_7107	none	STRG.14196.1,Trinity_GG_24953_c0_g1_i4,blat.proc3829893.chain_2633	3	STRG.14196.2,Trinity_GG_24953_c0_g1_i1,Trinity_GG_24953_c0_g1_i2,blat.proc3829893.chain_2631,blat.proc3829893.chain_2634	5
scaffold_2	alt_donor	19194929	19194930	-	asmbl_23868	none	STRG.2791.2,blat.proc3829871.chain_2955	2	STRG.2791.3	1
scaffold_8	alternate_exon	17810891	17811050	+	asmbl_52500	none	STRG.10687.3,Trinity_GG_5905_c0_g1_i1,blat.proc3829875.chain_3122	3	STRG.10687.1,STRG.10687.2,STRG.10687.4,Trinity_GG_5905_c0_g1_i4,Trinity_GG_5905_c0_g1_i7,blat.proc3829875.chain_3120,blat.proc3829875.chain_3121,blat.proc3829875.chain_3124	8
scaffold_12	alternate_exon	13403504	13403998	-	asmbl_8080	none	blat.proc3829893.chain_3626	1	STRG.15208.2,blat.proc3829893.chain_3625	2
scaffold_3	ends_in_intron	5266080	5266080	-	asmbl_38800	none	STRG.3218.2	1	STRG.3218.1,blat.proc3829887.chain_2955	2
scaffold_24	starts_in_intron	9118385	9118385	+	asmbl_32510,asmbl_32511	none	blat.proc3829885.chain_99	1	STRG.26927.1,blat.proc3829885.chain_101,blat.proc3829885.chain_102,blat.proc3829885.chain_104,blat.proc3829885.chain_97,blat.proc3829885.chain_98	6
scaffold_8	spliced_intron	6160729	6160833	-	asmbl_52853,asmbl_52857,asmbl_52858	none	STRG.10012.1,Trinity_GG_22628_c0_g1_i1,blat.proc3829891.chain_2213,blat.proc3829891.chain_2214,blat.proc3829891.chain_2218	5	STRG.10012.3,blat.proc3829891.chain_2216	2
scaffold_1	alt_acceptor	19386816	19386817	+	asmbl_2581	none	STRG.1348.1,blat.proc3829871.chain_1347	2	STRG.1348.2	1
scaffold_9	retained_exon	3374637	3374713	+	asmbl_53874	none	blat.proc3829875.chain_3400	1	STRG.10936.1,blat.proc3829875.chain_3399,blat.proc3829875.chain_3401	3
scaffold_10	alt_acceptor	17394058	17394059	+	asmbl_5049	none	STRG.13179.2	1	STRG.13179.1,STRG.13179.3	2
scaffold_22	skipped_exon	7691841	7693876	+	asmbl_29502	none	STRG.25104.2,blat.proc3829883.chain_2073	2	STRG.25104.1	1
scaffold_3	spliced_intron	6659860	6660509	+	asmbl_40072	none	blat.proc3829871.chain_3457	1	STRG.3290.3,Trinity_GG_1861_c0_g1_i1,Trinity_GG_1861_c0_g1_i4,blat.proc3829871.chain_3462,blat.proc3829871.chain_3463	5
scaffold_13	alternate_exon	2067078	2067118	+	asmbl_10546,asmbl_10548	none	STRG.15526.1,Trinity_GG_8552_c0_g1_i1,blat.proc3829879.chain_250	3	STRG.15526.2,blat.proc3829879.chain_249	2
scaffold_5	alt_donor	14569226	14569227	-	asmbl_45982	none	STRG.6648.2	1	STRG.6648.1,blat.proc3829889.chain_2698	2
scaffold_1	spliced_intron	7290185	7290684	+	asmbl_1892	none	STRG.526.3	1	STRG.526.1,STRG.526.4,Trinity_GG_300_c0_g1_i1,blat.proc3829871.chain_531	4
scaffold_2	starts_in_intron	7041968	7041968	+	asmbl_24551,asmbl_24552,asmbl_24553,asmbl_24554	none	Trinity_GG_1152_c0_g1_i1,Trinity_GG_1152_c0_g1_i2,Trinity_GG_1152_c0_g1_i3,Trinity_GG_1152_c0_g1_i5,blat.proc3829871.chain_2110,blat.proc3829871.chain_2111,blat.proc3829871.chain_2112,blat.proc3829871.chain_2113	8	STRG.2043.1	1
scaffold_3	retained_intron	6218352	6218491	-	asmbl_38876	none	Trinity_GG_18752_c0_g2_i1,blat.proc3829887.chain_2937	2	STRG.3276.2,blat.proc3829887.chain_2936	2
scaffold_7	retained_intron	13014655	13014839	-	asmbl_50094	none	STRG.9408.2	1	STRG.9408.1,blat.proc3829891.chain_1652,blat.proc3829891.chain_1657	3
scaffold_24	spliced_intron	8749383	8749460	-	asmbl_33095	none	STRG.26870.1	1	blat.proc3829901.chain_158,blat.proc3829901.chain_159,blat.proc3829901.chain_160,blat.proc3829901.chain_161	4
scaffold_28	alt_acceptor	3863123	3863124	-	asmbl_37505	none	STRG.29560.2	1	STRG.29560.1	1
scaffold_14	spliced_intron	15565823	15565849	+	asmbl_12606	none	blat.proc3829879.chain_2468	1	STRG.17784.1,STRG.17784.2	2
scaffold_6	alt_acceptor	12654091	12654092	+	asmbl_47367	none	blat.proc3829875.chain_365	1	STRG.8019.1,blat.proc3829875.chain_366	2
scaffold_19	starts_in_intron	3207470	3207470	+	asmbl_22109	none	STRG.22001.3,blat.proc3829881.chain_2955	2	STRG.22001.1,blat.proc3829881.chain_2954	2
scaffold_10	alternate_exon	2687938	2688051	-	asmbl_3034	none	STRG.12080.1,blat.proc3829893.chain_511	2	STRG.12080.2,blat.proc3829893.chain_510	2
scaffold_26	alt_donor	6385952	6385953	+	asmbl_35607	none	blat.proc3829885.chain_1336	1	STRG.28318.1,blat.proc3829885.chain_1337	2
scaffold_6	spliced_intron	5930657	5931098	+	asmbl_46923	none	STRG.7539.1,blat.proc3829873.chain_3601	2	STRG.7539.2,blat.proc3829873.chain_3602	2
scaffold_5	retained_exon	237364	237501	-	asmbl_45154	none	STRG.5594.2	1	STRG.5594.4	1
scaffold_15	starts_in_intron	12394406	12394406	-	asmbl_15589,asmbl_15592	none	STRG.18686.2,blat.proc3829895.chain_3451	2	STRG.18686.3,STRG.18686.4,STRG.18686.5,blat.proc3829895.chain_3457	4
scaffold_4	starts_in_intron	14506472	14506472	+	asmbl_43211	none	Trinity_GG_2830_c0_g1_i2,blat.proc3829873.chain_1391	2	STRG.5066.1,Trinity_GG_2830_c0_g1_i1,blat.proc3829873.chain_1390	3
scaffold_16	alternate_exon	788490	788559	+	asmbl_16839	none	blat.proc3829879.chain_3592	1	STRG.19046.1,STRG.19046.2,STRG.19046.3,blat.proc3829879.chain_3590,blat.proc3829879.chain_3591,blat.proc3829879.chain_3593	6
scaffold_23	spliced_intron	6289651	6289837	-	asmbl_31687,asmbl_31688	none	STRG.25954.1,Trinity_GG_31552_c0_g1_i5,Trinity_GG_31552_c0_g1_i7,blat.proc3829899.chain_3101,blat.proc3829899.chain_3102	5	STRG.25954.2,Trinity_GG_31552_c0_g1_i2,Trinity_GG_31552_c0_g1_i3,Trinity_GG_31552_c0_g1_i4,Trinity_GG_31552_c0_g1_i6,blat.proc3829899.chain_3103,blat.proc3829899.chain_3104,blat.proc3829899.chain_3105,blat.proc3829899.chain_3106,blat.proc3829899.chain_3107	10
scaffold_2	spliced_intron	15267438	15267758	+	asmbl_25025,asmbl_25029,asmbl_25031	none	STRG.2480.3,blat.proc3829871.chain_2517,blat.proc3829871.chain_2522	3	Trinity_GG_1353_c2_g1_i1,blat.proc3829871.chain_2539	2
scaffold_15	retained_intron	2894311	2894447	-	asmbl_15070	none	STRG.18064.2,Trinity_GG_27164_c0_g1_i1,Trinity_GG_27164_c0_g1_i2	3	STRG.18064.3	1
scaffold_3	retained_intron	6692163	6692245	+	asmbl_40084	none	STRG.3288.2	1	STRG.3288.1,Trinity_GG_1856_c0_g1_i1,blat.proc3829871.chain_3451	3
scaffold_26	retained_intron	5486047	5487189	+	asmbl_35527	none	Trinity_GG_15567_c0_g1_i4,blat.proc3829885.chain_1186,blat.proc3829885.chain_1189	3	STRG.28241.1,STRG.28241.2,Trinity_GG_15567_c0_g1_i5,Trinity_GG_15567_c0_g1_i7,Trinity_GG_15567_c0_g1_i8,blat.proc3829885.chain_1185,blat.proc3829885.chain_1187	7
scaffold_6	alternate_exon	13960885	13960931	+	asmbl_47490,asmbl_47492	none	STRG.8144.2,blat.proc3829875.chain_577,blat.proc3829875.chain_578	3	STRG.8144.1	1
scaffold_6	alternate_exon	1747411	1747656	+	asmbl_46686,asmbl_46689	none	STRG.7223.2,STRG.7223.3,blat.proc3829873.chain_3275	3	STRG.7223.1,Trinity_GG_3928_c0_g1_i1,blat.proc3829873.chain_3274	3
scaffold_24	retained_intron	8737299	8737413	-	asmbl_33089,asmbl_33090	none	STRG.26873.2,blat.proc3829901.chain_173	2	STRG.26873.1,blat.proc3829901.chain_169,blat.proc3829901.chain_170,blat.proc3829901.chain_171,blat.proc3829901.chain_172	5
scaffold_21	starts_in_intron	5519497	5519497	-	asmbl_27689,asmbl_27692	none	blat.proc3829899.chain_1155,blat.proc3829899.chain_1156	2	STRG.24069.1,blat.proc3829899.chain_1157	2
scaffold_5	spliced_intron	5972401	5972548	+	asmbl_44045	none	STRG.6001.2	1	STRG.6001.1	1
scaffold_6	alternate_exon	6466567	6466641	-	asmbl_48393	none	STRG.7560.2,Trinity_GG_21260_c0_g1_i1,blat.proc3829889.chain_3566	3	STRG.7560.1	1
scaffold_26	retained_intron	6703606	6703786	-	asmbl_34972,asmbl_34973	none	blat.proc3829901.chain_1522,blat.proc3829901.chain_1523	2	STRG.28358.1,STRG.28358.2,STRG.28358.3,blat.proc3829901.chain_1521,blat.proc3829901.chain_1524	5
scaffold_14	starts_in_intron	14147837	14147837	+	asmbl_12510	none	Trinity_GG_9669_c0_g1_i3,blat.proc3829879.chain_2282	2	STRG.17676.2,STRG.17676.4,blat.proc3829879.chain_2283,blat.proc3829879.chain_2284	4
scaffold_21	retained_intron	7600965	7601122	+	asmbl_28770	none	STRG.24282.3,blat.proc3829883.chain_1431	2	STRG.24282.1,blat.proc3829883.chain_1430	2
scaffold_25	alt_acceptor	7905436	7905437	-	asmbl_34385	none	blat.proc3829901.chain_903	1	blat.proc3829901.chain_904	1
scaffold_15	starts_in_intron	13256326	13256326	-	asmbl_15641	none	blat.proc3829895.chain_3430	1	STRG.18757.1,blat.proc3829895.chain_3428,blat.proc3829895.chain_3429	3
scaffold_17	alt_donor	536145	536146	+	asmbl_17670,asmbl_17672,asmbl_17676	none	STRG.19892.3,STRG.19892.4,blat.proc3829881.chain_739,blat.proc3829881.chain_743	4	STRG.19892.1,STRG.19892.2,blat.proc3829881.chain_740,blat.proc3829881.chain_742,blat.proc3829881.chain_744	5
scaffold_20	alt_acceptor	394810	394811	-	asmbl_26428	none	STRG.22722.2,blat.proc3829897.chain_3485	2	STRG.22722.1,Trinity_GG_29667_c0_g1_i4,blat.proc3829897.chain_3486	3
scaffold_15	alternate_exon	7434449	7434946	-	asmbl_15320	none	STRG.18330.1,blat.proc3829895.chain_3100	2	STRG.18330.2,STRG.18330.3,Trinity_GG_27324_c1_g1_i2,blat.proc3829895.chain_3098,blat.proc3829895.chain_3101,blat.proc3829895.chain_3102	6
scaffold_16	alternate_exon	10448835	10448910	+	asmbl_17341	none	blat.proc3829881.chain_424	1	STRG.19602.2,STRG.19602.4,STRG.19602.5	3
scaffold_16	retained_intron	810169	810259	-	asmbl_16079,asmbl_16083	none	blat.proc3829895.chain_3746,blat.proc3829895.chain_3748	2	STRG.19052.1,STRG.19052.3,blat.proc3829895.chain_3749	3
scaffold_17	ends_in_intron	2634278	2634278	+	asmbl_17799,asmbl_17805	none	STRG.20044.1,STRG.20044.2,Trinity_GG_10982_c0_g1_i4,blat.proc3829881.chain_875	4	STRG.20044.3,STRG.20044.4,Trinity_GG_10982_c0_g1_i2,blat.proc3829881.chain_876,blat.proc3829881.chain_878	5
scaffold_26	retained_exon	5648478	5648504	-	asmbl_34885,asmbl_34887,asmbl_34888,asmbl_34889,asmbl_34890,asmbl_34891	none	STRG.28255.1,STRG.28255.2,blat.proc3829901.chain_1436,blat.proc3829901.chain_1438,blat.proc3829901.chain_1441,blat.proc3829901.chain_1442,blat.proc3829901.chain_1443	7	STRG.28255.3,blat.proc3829901.chain_1437	2
scaffold_14	retained_intron	7495217	7495625	+	asmbl_12146	none	STRG.17177.1,blat.proc3829879.chain_1838	2	STRG.17177.4	1
scaffold_18	ends_in_intron	7868203	7868203	+	asmbl_20823,asmbl_20824	none	Trinity_GG_11877_c0_g1_i12,Trinity_GG_11877_c0_g1_i14,blat.proc3829881.chain_2471,blat.proc3829881.chain_2475	4	STRG.21477.1,STRG.21477.2,STRG.21477.3,STRG.21477.4,STRG.21477.5,STRG.21477.6,Trinity_GG_11877_c0_g1_i6,blat.proc3829881.chain_2467,blat.proc3829881.chain_2469,blat.proc3829881.chain_2470,blat.proc3829881.chain_2473,blat.proc3829881.chain_2474,blat.proc3829881.chain_2476	13
scaffold_17	alt_acceptor	14325816	14325817	-	asmbl_19472	none	blat.proc3829897.chain_1795	1	STRG.20895.2,Trinity_GG_28739_c0_g1_i1,blat.proc3829897.chain_1797	3
scaffold_8	spliced_intron	8555730	8555811	-	asmbl_52950,asmbl_52951,asmbl_52952	none	STRG.10106.1,blat.proc3829891.chain_2300,blat.proc3829891.chain_2301,blat.proc3829891.chain_2302	4	blat.proc3829891.chain_2303	1
scaffold_11	alt_donor	35543	35544	-	asmbl_6341	none	blat.proc3829893.chain_1684	1	STRG.13223.2	1
scaffold_28	alt_acceptor	2684464	2684465	-	asmbl_37398	none	STRG.29426.1,blat.proc3829901.chain_2535	2	STRG.29426.2	1
scaffold_27	retained_intron	314278	314458	-	asmbl_36613,asmbl_36614	none	Trinity_GG_32948_c0_g1_i13,blat.proc3829901.chain_1673	2	STRG.28538.1,STRG.28538.2,STRG.28538.3	3
scaffold_18	alt_acceptor	12935886	12935887	+	asmbl_21005	none	STRG.21731.3	1	STRG.21731.1,blat.proc3829897.chain_2535	2
scaffold_5	alt_donor	5047311	5047312	+	asmbl_43998	none	blat.proc3829873.chain_2108	1	STRG.5951.1,blat.proc3829873.chain_2107	2
scaffold_17	retained_intron	3998584	3998790	+	asmbl_17880,asmbl_17881,asmbl_17883,asmbl_17885,asmbl_17886	none	STRG.20145.1,STRG.20145.3,STRG.20145.4,blat.proc3829881.chain_988,blat.proc3829881.chain_991,blat.proc3829881.chain_992	6	blat.proc3829881.chain_990	1
scaffold_10	retained_intron	3129132	3129956	-	asmbl_3080	none	STRG.12130.2,Trinity_GG_23778_c0_g1_i1,Trinity_GG_23778_c0_g1_i4,blat.proc3829893.chain_592,blat.proc3829893.chain_593	5	STRG.12130.3	1
scaffold_20	ends_in_intron	10790927	10790927	-	asmbl_27043	none	Trinity_GG_30157_c1_g1_i1,blat.proc3829899.chain_593	2	STRG.23593.1,blat.proc3829899.chain_590	2
scaffold_11	retained_intron	17095575	17095790	+	asmbl_6176,asmbl_6177	none	STRG.14365.1,STRG.14365.2,blat.proc3829877.chain_2871	3	STRG.14365.3,blat.proc3829877.chain_2870	2
scaffold_2	alt_acceptor	16370315	16370316	+	asmbl_25161	none	STRG.2569.1	1	blat.proc3829871.chain_2753	1
scaffold_16	starts_in_intron	10104652	10104652	+	asmbl_17321	none	blat.proc3829881.chain_479	1	STRG.19581.1,STRG.19581.2,blat.proc3829881.chain_481	3
scaffold_7	ends_in_intron	12453642	12453642	-	asmbl_50046	none	STRG.9342.5,Trinity_GG_22282_c1_g1_i1,blat.proc3829891.chain_1612	3	STRG.9342.1,STRG.9342.2,STRG.9342.4,Trinity_GG_22282_c1_g1_i7,Trinity_GG_22282_c1_g1_i9,blat.proc3829891.chain_1604,blat.proc3829891.chain_1605,blat.proc3829891.chain_1606,blat.proc3829891.chain_1607,blat.proc3829891.chain_1608,blat.proc3829891.chain_1611,blat.proc3829891.chain_1614	12
scaffold_2	retained_intron	18711549	18711905	+	asmbl_25270,asmbl_25271	none	STRG.2748.3,Trinity_GG_1549_c1_g1_i2,blat.proc3829871.chain_2925	3	STRG.2748.1,STRG.2748.2,blat.proc3829871.chain_2923,blat.proc3829871.chain_2924	4
scaffold_24	ends_in_intron	9080104	9080104	+	asmbl_32501	none	Trinity_GG_14897_c0_g1_i6,blat.proc3829885.chain_77	2	STRG.26929.1,STRG.26929.2,STRG.26929.3,Trinity_GG_14897_c0_g1_i2,Trinity_GG_14897_c0_g1_i8,Trinity_GG_14897_c0_g1_i9,blat.proc3829885.chain_71,blat.proc3829885.chain_72,blat.proc3829885.chain_73,blat.proc3829885.chain_74,blat.proc3829885.chain_76	11
scaffold_13	spliced_intron	3810685	3810836	-	asmbl_9545,asmbl_9547	none	STRG.15699.1,blat.proc3829895.chain_408,blat.proc3829895.chain_409	3	blat.proc3829895.chain_410,blat.proc3829895.chain_412	2
scaffold_15	ends_in_intron	6120095	6120095	-	asmbl_15263	none	Trinity_GG_27291_c1_g1_i1,blat.proc3829895.chain_3042	2	STRG.18268.1	1
scaffold_6	spliced_intron	16613086	16613686	+	asmbl_47651,asmbl_47653	none	STRG.8384.1,blat.proc3829875.chain_767,blat.proc3829875.chain_768	3	STRG.8384.2,STRG.8384.3,blat.proc3829875.chain_766	3
scaffold_18	skipped_exon	4848613	4849494	+	asmbl_20601	none	STRG.21267.3,Trinity_GG_11716_c0_g1_i6,blat.proc3829881.chain_2170	3	STRG.21267.1,Trinity_GG_11716_c0_g1_i1,Trinity_GG_11716_c0_g1_i7,blat.proc3829881.chain_2169,blat.proc3829881.chain_2173	5
scaffold_10	alternate_exon	9497346	9497379	+	asmbl_4669	none	STRG.12686.1	1	Trinity_GG_6996_c0_g1_i1,blat.proc3829877.chain_1251	2
scaffold_16	alternate_exon	10446839	10447526	+	asmbl_17338	none	STRG.19602.4	1	blat.proc3829881.chain_424	1
scaffold_14	retained_exon	9273524	9273607	-	asmbl_13346	none	STRG.17323.2	1	STRG.17323.4	1
scaffold_25	alt_acceptor	443577	443578	+	asmbl_33325	none	STRG.27072.2	1	STRG.27072.1	1
scaffold_1	alt_acceptor	13884634	13884635	-	asmbl_858	none	STRG.993.2,blat.proc3829887.chain_868	2	STRG.993.4	1
scaffold_15	starts_in_intron	11557183	11557183	-	asmbl_15537	none	STRG.18605.1	1	STRG.18605.2,blat.proc3829895.chain_3363	2
scaffold_19	ends_in_intron	10229606	10229606	+	asmbl_22439	none	blat.proc3829881.chain_3220	1	STRG.22390.1	1
scaffold_12	alt_acceptor	3100149	3100150	+	asmbl_8504	none	STRG.14537.2	1	STRG.14537.1,blat.proc3829877.chain_3032	2
scaffold_9	alternate_exon	9614424	9614533	-	asmbl_55182	none	STRG.11319.1,blat.proc3829891.chain_3437	2	STRG.11319.2	1
scaffold_8	retained_intron	9467271	9467486	-	asmbl_53033,asmbl_53034,asmbl_53036	none	blat.proc3829891.chain_2403,blat.proc3829891.chain_2405,blat.proc3829891.chain_2408	3	STRG.10197.1,Trinity_GG_22724_c0_g1_i12,blat.proc3829891.chain_2400,blat.proc3829891.chain_2401,blat.proc3829891.chain_2406,blat.proc3829891.chain_2407	6
scaffold_28	retained_intron	7438245	7438344	+	asmbl_38374	none	STRG.29801.2,blat.proc3829885.chain_2901	2	STRG.29801.1,blat.proc3829885.chain_2900	2
scaffold_13	retained_intron	394778	395582	-	asmbl_9305,asmbl_9312,asmbl_9313	none	Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i25,Trinity_GG_25691_c0_g1_i7,blat.proc3829895.chain_223,blat.proc3829895.chain_229,blat.proc3829895.chain_232	6	STRG.15428.1,STRG.15428.2,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i8,blat.proc3829895.chain_226,blat.proc3829895.chain_230,blat.proc3829895.chain_233	8
scaffold_24	retained_intron	6225543	6226490	-	asmbl_32929,asmbl_32931,asmbl_32932,asmbl_32937,asmbl_32938,asmbl_32940	none	STRG.26664.2,blat.proc3829899.chain_3687,blat.proc3829899.chain_3690,blat.proc3829899.chain_3693,blat.proc3829899.chain_3695,blat.proc3829899.chain_3696	6	Trinity_GG_31899_c0_g1_i9,blat.proc3829899.chain_3692	2
scaffold_20	starts_in_intron	7099784	7099784	-	asmbl_26793	none	blat.proc3829899.chain_254	1	STRG.23258.1	1
scaffold_14	retained_intron	3364505	3364903	-	asmbl_12984	none	STRG.16906.1,Trinity_GG_26491_c0_g1_i2,blat.proc3829895.chain_1626	3	STRG.16906.2,blat.proc3829895.chain_1625	2
scaffold_7	alt_acceptor	7612307	7612308	-	asmbl_49765,asmbl_49766,asmbl_49767	none	STRG.9004.2,STRG.9004.3,STRG.9004.4,blat.proc3829891.chain_1280	4	STRG.9004.1,blat.proc3829891.chain_1278	2
scaffold_28	retained_exon	1008211	1008357	-	asmbl_37279	none	STRG.29292.2,blat.proc3829901.chain_2364	2	STRG.29292.1,blat.proc3829901.chain_2363	2
scaffold_9	spliced_intron	6396892	6397036	-	asmbl_55017	none	STRG.11162.2	1	blat.proc3829891.chain_3251	1
scaffold_5	spliced_intron	8538359	8538561	-	asmbl_45593,asmbl_45595,asmbl_45596,asmbl_45598,asmbl_45600,asmbl_45601,asmbl_45602	none	STRG.6191.1,STRG.6191.2,STRG.6191.3,STRG.6191.4,blat.proc3829889.chain_2246,blat.proc3829889.chain_2247,blat.proc3829889.chain_2248,blat.proc3829889.chain_2250,blat.proc3829889.chain_2251,blat.proc3829889.chain_2253	10	Trinity_GG_20482_c0_g2_i2,blat.proc3829889.chain_2252	2
scaffold_21	spliced_intron	2654346	2654440	-	asmbl_27516	none	STRG.23889.4	1	STRG.23889.2,STRG.23889.3,Trinity_GG_30293_c0_g1_i8,blat.proc3829899.chain_908,blat.proc3829899.chain_909,blat.proc3829899.chain_913,blat.proc3829899.chain_914	7
scaffold_22	alt_acceptor	216305	216306	+	asmbl_29113	none	STRG.24661.6	1	STRG.24661.4	1
scaffold_13	retained_exon	11380238	11381855	-	asmbl_10052	none	STRG.16287.1,blat.proc3829895.chain_1034	2	STRG.16287.3,STRG.16287.5,Trinity_GG_26140_c0_g1_i1,Trinity_GG_26140_c0_g1_i3,blat.proc3829895.chain_1028,blat.proc3829895.chain_1033	6
scaffold_7	retained_intron	12415910	12416003	-	asmbl_50027	none	blat.proc3829891.chain_1565	1	STRG.9334.1,blat.proc3829891.chain_1562,blat.proc3829891.chain_1563,blat.proc3829891.chain_1566	4
scaffold_7	retained_intron	18002316	18002395	+	asmbl_51398	none	blat.proc3829875.chain_2106,blat.proc3829875.chain_2107	2	blat.proc3829875.chain_2108	1
scaffold_16	starts_in_intron	11695795	11695795	-	asmbl_16536	none	blat.proc3829897.chain_614	1	STRG.19682.1,blat.proc3829897.chain_615	2
scaffold_3	starts_in_intron	5260951	5260951	-	asmbl_38797	none	blat.proc3829887.chain_2958	1	STRG.3218.1,Trinity_GG_18760_c0_g1_i5,blat.proc3829887.chain_2955,blat.proc3829887.chain_2959	4
scaffold_20	retained_intron	5115892	5116021	+	asmbl_25755	none	Trinity_GG_12767_c0_g1_i2,blat.proc3829883.chain_262	2	STRG.23133.1,blat.proc3829883.chain_261	2
scaffold_6	retained_intron	13229076	13229383	+	asmbl_47439,asmbl_47442,asmbl_47443,asmbl_47444,asmbl_47448	none	STRG.8077.2,STRG.8077.3,STRG.8077.7,blat.proc3829875.chain_500,blat.proc3829875.chain_501,blat.proc3829875.chain_503,blat.proc3829875.chain_506	7	STRG.8077.1,STRG.8077.4,blat.proc3829875.chain_499,blat.proc3829875.chain_504	4
scaffold_4	retained_intron	4103343	4103635	+	asmbl_42556	none	Trinity_GG_2393_c0_g1_i1,blat.proc3829873.chain_653,blat.proc3829873.chain_654,blat.proc3829873.chain_658	4	blat.proc3829873.chain_662	1
scaffold_4	spliced_intron	4417120	4417266	+	asmbl_42571,asmbl_42576,asmbl_42577,asmbl_42580,asmbl_42583,asmbl_42584,asmbl_42586,asmbl_42587,asmbl_42588,asmbl_42589,asmbl_42591	none	STRG.4344.1,STRG.4344.2,STRG.4344.3,STRG.4344.4,Trinity_GG_2404_c0_g1_i5,Trinity_GG_2404_c0_g1_i8,blat.proc3829873.chain_680,blat.proc3829873.chain_681,blat.proc3829873.chain_682,blat.proc3829873.chain_683,blat.proc3829873.chain_686,blat.proc3829873.chain_689,blat.proc3829873.chain_691,blat.proc3829873.chain_695,blat.proc3829873.chain_696,blat.proc3829873.chain_698	16	Trinity_GG_2404_c0_g1_i10,Trinity_GG_2404_c0_g1_i19,blat.proc3829873.chain_685,blat.proc3829873.chain_687,blat.proc3829873.chain_690,blat.proc3829873.chain_697	6
scaffold_9	starts_in_intron	17839583	17839583	-	asmbl_55654	none	blat.proc3829893.chain_254	1	STRG.11863.1,blat.proc3829893.chain_253	2
scaffold_11	skipped_exon	2099318	2099760	-	asmbl_6453	none	blat.proc3829893.chain_1824	1	STRG.13364.1,STRG.13364.2,STRG.13364.3,blat.proc3829893.chain_1825,blat.proc3829893.chain_1826,blat.proc3829893.chain_1827	6
scaffold_12	alternate_exon	6530238	6530268	+	asmbl_8657	none	STRG.14736.2	1	STRG.14736.1,Trinity_GG_8132_c0_g1_i1,blat.proc3829877.chain_3211	3
scaffold_15	retained_intron	12003651	12003789	-	asmbl_15571,asmbl_15572	none	STRG.18635.3,blat.proc3829895.chain_3340	2	STRG.18635.1,STRG.18635.2,blat.proc3829895.chain_3339	3
scaffold_11	spliced_intron	13252736	13252829	-	asmbl_7104,asmbl_7105,asmbl_7106	none	STRG.14183.1,STRG.14183.2,blat.proc3829893.chain_2644,blat.proc3829893.chain_2645,blat.proc3829893.chain_2646	5	STRG.14183.3,Trinity_GG_24958_c0_g1_i1,blat.proc3829893.chain_2647	3
scaffold_1	retained_intron	12564359	12564465	+	asmbl_2219	none	blat.proc3829871.chain_967	1	STRG.865.1,blat.proc3829871.chain_968	2
scaffold_13	retained_intron	16326282	16327028	-	asmbl_10264,asmbl_10265	none	STRG.16676.2,STRG.16676.3,blat.proc3829895.chain_1349	3	STRG.16676.1,blat.proc3829895.chain_1348	2
scaffold_10	alt_acceptor	16475945	16475946	-	asmbl_3909	none	STRG.13105.4	1	STRG.13105.1,STRG.13105.3,blat.proc3829893.chain_1612	3
scaffold_24	retained_exon	2980353	2980510	-	asmbl_32799	none	STRG.26488.1,blat.proc3829899.chain_3491	2	STRG.26488.2,blat.proc3829899.chain_3490	2
scaffold_1	alternate_exon	5136272	5136945	+	asmbl_1696	none	STRG.317.2,blat.proc3829871.chain_381	2	STRG.317.1	1
scaffold_9	starts_in_intron	3702630	3702630	-	asmbl_54894	none	blat.proc3829891.chain_3158	1	STRG.10970.1,blat.proc3829891.chain_3157	2
scaffold_2	alt_acceptor	14153367	14153368	+	asmbl_24915	none	STRG.2409.1,blat.proc3829871.chain_2575	2	STRG.2409.2	1
scaffold_11	alt_acceptor	8078029	8078030	-	asmbl_6801,asmbl_6803,asmbl_6814,asmbl_6817	none	STRG.13802.4,Trinity_GG_24711_c0_g1_i2,Trinity_GG_24711_c0_g1_i5,blat.proc3829893.chain_2198,blat.proc3829893.chain_2200,blat.proc3829893.chain_2201	6	STRG.13802.2,STRG.13802.3,STRG.13802.5,Trinity_GG_24711_c0_g1_i17,Trinity_GG_24711_c0_g1_i18,Trinity_GG_24711_c0_g1_i3,Trinity_GG_24711_c0_g1_i8,blat.proc3829893.chain_2197,blat.proc3829893.chain_2204,blat.proc3829893.chain_2205,blat.proc3829893.chain_2206,blat.proc3829893.chain_2209,blat.proc3829893.chain_2211	13
scaffold_15	spliced_intron	14893299	14893410	+	asmbl_14655,asmbl_14656	none	STRG.18890.3,blat.proc3829879.chain_3464	2	STRG.18890.1,STRG.18890.2,Trinity_GG_10355_c0_g1_i5,Trinity_GG_10355_c0_g1_i7,blat.proc3829879.chain_3462,blat.proc3829879.chain_3463,blat.proc3829879.chain_3465	7
scaffold_18	skipped_exon	246105	247221	-	asmbl_19607	none	STRG.20968.1,blat.proc3829897.chain_1857	2	STRG.20968.2,blat.proc3829897.chain_1858	2
scaffold_433	retained_intron	4666	4794	-	asmbl_43677	none	STRG.30302.2	1	STRG.30302.1	1
scaffold_18	retained_exon	3915822	3916635	-	asmbl_19822	none	STRG.21192.2	1	blat.proc3829897.chain_2089	1
scaffold_12	alt_donor	14104457	14104458	-	asmbl_8111,asmbl_8114	none	Trinity_GG_25546_c0_g1_i8,blat.proc3829893.chain_3677,blat.proc3829893.chain_3680	3	Trinity_GG_25546_c0_g1_i2,blat.proc3829893.chain_3678,blat.proc3829893.chain_3679	3
scaffold_27	alternate_exon	5782860	5782992	-	asmbl_36974	none	STRG.28957.1	1	STRG.28957.2	1
scaffold_4	alternate_exon	7259296	7265359	+	asmbl_42816,asmbl_42818	none	STRG.4560.2,STRG.4560.4,Trinity_GG_2542_c0_g1_i1,Trinity_GG_2542_c0_g1_i3,blat.proc3829873.chain_958,blat.proc3829873.chain_959,blat.proc3829873.chain_964	7	STRG.4560.6,STRG.4560.7,Trinity_GG_2542_c0_g1_i4,blat.proc3829873.chain_960	4
scaffold_1	ends_in_intron	11692560	11692560	-	asmbl_665	none	blat.proc3829887.chain_574	1	blat.proc3829887.chain_575	1
scaffold_14	alternate_exon	1377478	1377609	-	asmbl_12859	none	STRG.16775.3	1	blat.proc3829895.chain_1490	1
scaffold_1	retained_intron	10414454	10414950	-	asmbl_594	none	Trinity_GG_17393_c0_g2_i1,blat.proc3829887.chain_610	2	STRG.680.3	1
scaffold_15	retained_exon	6957077	6957668	-	asmbl_15289	none	STRG.18291.2,blat.proc3829895.chain_3052	2	STRG.18291.4	1
scaffold_22	starts_in_intron	3042114	3042114	+	asmbl_29244	none	Trinity_GG_13699_c0_g1_i2,blat.proc3829883.chain_1825	2	STRG.24775.1,blat.proc3829883.chain_1824,blat.proc3829883.chain_1826	3
scaffold_11	skipped_exon	13576442	13579141	-	asmbl_7119,asmbl_7120	none	STRG.14204.1,STRG.14204.3,blat.proc3829893.chain_2652,blat.proc3829893.chain_2654	4	STRG.14204.2	1
scaffold_18	retained_exon	3916302	3916635	-	asmbl_19822	none	STRG.21192.2	1	STRG.21192.3	1
scaffold_5	alt_donor	10804344	10804345	+	asmbl_44360	none	STRG.6347.2,blat.proc3829873.chain_2487	2	STRG.6347.1,blat.proc3829873.chain_2486	2
scaffold_24	spliced_intron	9952412	9952699	-	asmbl_33150	none	Trinity_GG_32087_c0_g1_i5	1	Trinity_GG_32087_c0_g1_i6	1
scaffold_17	retained_intron	10037074	10037314	-	asmbl_19271,asmbl_19277	none	STRG.20608.1,STRG.20608.4,Trinity_GG_28623_c0_g1_i3,blat.proc3829897.chain_1589	4	STRG.20608.5,STRG.20608.6,Trinity_GG_28623_c0_g1_i4,blat.proc3829897.chain_1587	4
scaffold_15	alt_acceptor	5368955	5368956	-	asmbl_15211	none	STRG.18225.1	1	STRG.18225.2	1
scaffold_11	retained_intron	10145073	10145116	-	asmbl_6961	none	Trinity_GG_24849_c0_g1_i1	1	STRG.14016.1,STRG.14016.2	2
scaffold_12	skipped_exon	12449299	12450134	+	asmbl_8973	none	blat.proc3829877.chain_3557	1	STRG.15137.1,STRG.15137.2,STRG.15137.4,blat.proc3829877.chain_3559,blat.proc3829877.chain_3560	5
scaffold_28	retained_intron	5011999	5012133	+	asmbl_38253	none	Trinity_GG_16433_c0_g1_i1,blat.proc3829885.chain_2753	2	STRG.29628.1,blat.proc3829885.chain_2751,blat.proc3829885.chain_2752	3
scaffold_28	alt_acceptor	8414930	8414931	+	asmbl_38441	none	STRG.29890.2	1	STRG.29890.1,Trinity_GG_16556_c0_g1_i1,Trinity_GG_16556_c0_g1_i2,blat.proc3829885.chain_2985,blat.proc3829885.chain_2986	5
scaffold_5	alt_acceptor	981743	981744	-	asmbl_45197	none	STRG.5641.2	1	STRG.5641.1,blat.proc3829889.chain_1755	2
scaffold_15	starts_in_intron	3363390	3363390	-	asmbl_15097	none	blat.proc3829895.chain_2839	1	STRG.18095.2,blat.proc3829895.chain_2838	2
scaffold_4	starts_in_intron	1637174	1637174	+	asmbl_42448	none	STRG.4195.3	1	STRG.4195.1,blat.proc3829873.chain_541	2
scaffold_4	alt_acceptor	7048453	7048454	+	asmbl_42788	none	STRG.4541.2	1	STRG.4541.1,blat.proc3829873.chain_917	2
scaffold_20	spliced_intron	5922950	5923078	-	asmbl_26707,asmbl_26708,asmbl_26709,asmbl_26710,asmbl_26713	none	STRG.23184.1,STRG.23184.2,STRG.23184.3,STRG.23184.4,blat.proc3829899.chain_147,blat.proc3829899.chain_148,blat.proc3829899.chain_149,blat.proc3829899.chain_150	8	blat.proc3829899.chain_144,blat.proc3829899.chain_145	2
scaffold_23	retained_intron	4950206	4950422	+	asmbl_30839	none	Trinity_GG_14281_c0_g1_i5,blat.proc3829883.chain_2755	2	Trinity_GG_14281_c0_g1_i2,blat.proc3829883.chain_2756	2
scaffold_20	starts_in_intron	1952624	1952624	-	asmbl_26551	none	STRG.22923.2	1	STRG.22923.1,blat.proc3829897.chain_3699	2
scaffold_3	ends_in_intron	17145534	17145534	+	asmbl_40619	none	STRG.3949.2	1	STRG.3949.1,STRG.3949.3,blat.proc3829873.chain_352	3
scaffold_8	alternate_exon	16081325	16081401	-	asmbl_53363	none	STRG.10584.3,blat.proc3829891.chain_2680	2	STRG.10584.1,STRG.10584.2,blat.proc3829891.chain_2681	3
scaffold_2	spliced_intron	18614288	18614705	-	asmbl_23822	none	blat.proc3829887.chain_2516	1	blat.proc3829887.chain_2514	1
scaffold_2	spliced_intron	14192137	14192314	-	asmbl_23580,asmbl_23581,asmbl_23582,asmbl_23583,asmbl_23584,asmbl_23585,asmbl_23586	none	STRG.2417.1,STRG.2417.2,blat.proc3829887.chain_2207,blat.proc3829887.chain_2208,blat.proc3829887.chain_2209,blat.proc3829887.chain_2210,blat.proc3829887.chain_2212	7	Trinity_GG_18310_c0_g1_i1,blat.proc3829887.chain_2211	2
scaffold_2	retained_intron	4124203	4124621	-	asmbl_23079	none	Trinity_GG_18018_c0_g1_i2,blat.proc3829887.chain_1660	2	STRG.1854.1,blat.proc3829887.chain_1661	2
scaffold_13	alt_acceptor	3923284	3923285	-	asmbl_9556	none	STRG.15707.3	1	STRG.15707.1,STRG.15707.2,blat.proc3829895.chain_430,blat.proc3829895.chain_431	4
scaffold_21	starts_in_intron	5284192	5284192	-	asmbl_27664	none	STRG.24056.3	1	STRG.24056.1,STRG.24056.2,STRG.24056.4,blat.proc3829899.chain_1144,blat.proc3829899.chain_1146	5
scaffold_2	spliced_intron	888327	888347	+	asmbl_24152	none	STRG.1564.4	1	STRG.1564.1,STRG.1564.2,STRG.1564.3,STRG.1564.5,Trinity_GG_856_c1_g1_i1,Trinity_GG_856_c1_g1_i3,blat.proc3829871.chain_1551,blat.proc3829871.chain_1552	8
scaffold_19	skipped_exon	12317345	12318253	+	asmbl_22583	none	STRG.22553.2,blat.proc3829881.chain_3508	2	STRG.22553.1,blat.proc3829881.chain_3509	2
scaffold_13	retained_intron	1238377	1238503	+	asmbl_10524	none	blat.proc3829879.chain_209	1	STRG.15478.1,STRG.15478.2,STRG.15478.4,STRG.15478.5,STRG.15478.6,Trinity_GG_8526_c0_g2_i3,blat.proc3829879.chain_204,blat.proc3829879.chain_205,blat.proc3829879.chain_207,blat.proc3829879.chain_208	10
scaffold_20	retained_exon	6655900	6656024	-	asmbl_26761,asmbl_26762,asmbl_26763	none	STRG.23227.1,STRG.23227.2,blat.proc3829899.chain_281,blat.proc3829899.chain_284	4	blat.proc3829899.chain_283	1
scaffold_2	spliced_intron	946894	947803	+	asmbl_24188	none	STRG.1574.2,blat.proc3829871.chain_1649	2	STRG.1574.1,STRG.1574.3,blat.proc3829871.chain_1645	3
scaffold_1	spliced_intron	8645118	8645235	-	asmbl_473,asmbl_474,asmbl_483	none	STRG.572.1,STRG.572.2,blat.proc3829887.chain_454,blat.proc3829887.chain_456,blat.proc3829887.chain_458	5	STRG.572.3,blat.proc3829887.chain_457	2
scaffold_17	alt_acceptor	7024346	7024347	+	asmbl_18014	none	STRG.20355.2	1	STRG.20355.3	1
scaffold_26	ends_in_intron	5041009	5041009	+	asmbl_35475	none	blat.proc3829885.chain_1174	1	STRG.28206.1,blat.proc3829883.chain_2343,blat.proc3829883.chain_2345,blat.proc3829885.chain_1156,blat.proc3829885.chain_1157,blat.proc3829885.chain_1158,blat.proc3829885.chain_1159,blat.proc3829885.chain_1162,blat.proc3829885.chain_1163,blat.proc3829885.chain_1164,blat.proc3829885.chain_1168,blat.proc3829885.chain_1169	12
scaffold_19	alternate_exon	10220926	10221441	+	asmbl_22431	none	STRG.22389.1,blat.proc3829881.chain_3317	2	STRG.22389.4,blat.proc3829881.chain_3315	2
scaffold_11	alternate_exon	8430913	8430957	+	asmbl_5738,asmbl_5740	none	STRG.13849.2,Trinity_GG_7631_c0_g1_i3,blat.proc3829877.chain_2325	3	STRG.13849.1,Trinity_GG_7631_c0_g2_i1,blat.proc3829877.chain_2331	3
scaffold_5	starts_in_intron	10652755	10652755	+	asmbl_44356	none	Trinity_GG_3466_c1_g1_i1,blat.proc3829873.chain_2501	2	STRG.6337.2	1
scaffold_26	starts_in_intron	5561176	5561176	+	asmbl_35552	none	Trinity_GG_15578_c2_g1_i1,blat.proc3829885.chain_1209	2	STRG.28249.1,STRG.28249.2,blat.proc3829885.chain_1211	3
scaffold_10	alt_acceptor	5824112	5824113	+	asmbl_4487	none	STRG.12397.2,Trinity_GG_6884_c0_g1_i4,blat.proc3829877.chain_1050	3	STRG.12397.3,Trinity_GG_6884_c0_g1_i2,blat.proc3829877.chain_1048	3
scaffold_14	alt_donor	8451916	8451917	-	asmbl_13298	none	Trinity_GG_26716_c0_g1_i3	1	Trinity_GG_26716_c0_g1_i1	1
scaffold_5	alt_donor	1247246	1247247	+	asmbl_43781	none	STRG.5682.1,blat.proc3829873.chain_1836	2	STRG.5682.2	1
scaffold_3	retained_exon	6077192	6078434	-	asmbl_38847,asmbl_38848	none	STRG.3254.2,STRG.3254.3,blat.proc3829887.chain_3021,blat.proc3829887.chain_3023	4	STRG.3254.1,blat.proc3829887.chain_3026	2
scaffold_9	starts_in_intron	6966215	6966215	+	asmbl_54103	none	Trinity_GG_6201_c1_g1_i1,blat.proc3829875.chain_3618	2	STRG.11198.1,Trinity_GG_6201_c1_g1_i2,blat.proc3829875.chain_3617	3
scaffold_13	spliced_intron	8013982	8014196	+	asmbl_11073,asmbl_11075,asmbl_11077,asmbl_11078	none	STRG.16066.1,STRG.16066.2,blat.proc3829879.chain_761,blat.proc3829879.chain_762,blat.proc3829879.chain_765	5	Trinity_GG_8816_c0_g1_i1,blat.proc3829879.chain_760	2
scaffold_23	alt_acceptor	9424898	9424899	+	asmbl_31090,asmbl_31092	none	STRG.26145.1,STRG.26145.2,blat.proc3829883.chain_3059	3	STRG.26145.3,Trinity_GG_14454_c1_g1_i1,blat.proc3829883.chain_3060	3
scaffold_6	starts_in_intron	1487731	1487731	+	asmbl_46661	none	blat.proc3829873.chain_3299	1	STRG.7183.2	1
scaffold_28	alt_donor	833094	833095	-	asmbl_37266	none	STRG.29277.1,blat.proc3829901.chain_2329	2	STRG.29277.2	1
scaffold_20	retained_exon	11085819	11085964	-	asmbl_27062	none	STRG.23609.1,Trinity_GG_30167_c1_g1_i1,blat.proc3829899.chain_618	3	STRG.23609.3,Trinity_GG_30167_c1_g1_i2,blat.proc3829899.chain_616	3
scaffold_4	starts_in_intron	4124299	4124299	-	asmbl_41239	none	STRG.4324.2,blat.proc3829889.chain_448	2	STRG.4324.1,STRG.4324.3,blat.proc3829889.chain_447,blat.proc3829889.chain_449	4
scaffold_19	skipped_exon	3547741	3548310	-	asmbl_21320	none	STRG.22032.1	1	STRG.22032.2,blat.proc3829897.chain_2771	2
scaffold_1	retained_intron	12453045	12453262	+	asmbl_2212	none	blat.proc3829871.chain_950	1	STRG.857.1,STRG.857.2,blat.proc3829871.chain_949	3
scaffold_15	starts_in_intron	4815985	4815985	-	asmbl_15171,asmbl_15173	none	blat.proc3829895.chain_2916,blat.proc3829895.chain_2919	2	STRG.18192.1,blat.proc3829895.chain_2917,blat.proc3829895.chain_2918,blat.proc3829895.chain_2920	4
scaffold_10	retained_exon	948871	948926	+	asmbl_4172	none	STRG.11969.2,Trinity_GG_6645_c0_g1_i3,blat.proc3829877.chain_649	3	STRG.11969.1,Trinity_GG_6645_c0_g1_i1,Trinity_GG_6645_c0_g1_i4,blat.proc3829877.chain_651,blat.proc3829877.chain_653	5
scaffold_3	ends_in_intron	19836455	19836455	-	asmbl_39610	none	blat.proc3829889.chain_129	1	STRG.4097.1,blat.proc3829889.chain_130,blat.proc3829889.chain_131	3
scaffold_11	spliced_intron	7924464	7925337	+	asmbl_5665	none	STRG.13793.1,Trinity_GG_7594_c0_g1_i3,blat.proc3829877.chain_2265	3	STRG.13793.2,Trinity_GG_7594_c0_g1_i2,blat.proc3829877.chain_2264	3
scaffold_22	alternate_exon	5817820	5818059	-	asmbl_30053	none	STRG.24914.2	1	STRG.24914.1	1
scaffold_2	retained_intron	16288201	16288309	+	asmbl_25143	none	blat.proc3829871.chain_2751	1	blat.proc3829871.chain_2749	1
scaffold_1	alt_donor	14428503	14428504	-	asmbl_929	none	STRG.1042.3,blat.proc3829887.chain_963	2	STRG.1042.1,blat.proc3829887.chain_964	2
scaffold_5	retained_intron	19351052	19351309	-	asmbl_46276	none	blat.proc3829889.chain_2997	1	STRG.7024.1,STRG.7024.2,blat.proc3829889.chain_2998	3
scaffold_10	starts_in_intron	15382361	15382361	-	asmbl_3883	none	Trinity_GG_24331_c0_g1_i1,blat.proc3829893.chain_1556	2	STRG.13044.1,Trinity_GG_24331_c0_g1_i2,blat.proc3829893.chain_1555	3
scaffold_23	starts_in_intron	5312049	5312049	+	asmbl_30859	none	Trinity_GG_14290_c0_g1_i6,blat.proc3829883.chain_2774	2	STRG.25889.2,blat.proc3829883.chain_2773	2
scaffold_15	skipped_exon	6888065	6888716	-	asmbl_15285	none	STRG.18290.5	1	STRG.18290.1,STRG.18290.2,STRG.18290.3,STRG.18290.6,blat.proc3829895.chain_2933,blat.proc3829895.chain_2934,blat.proc3829895.chain_2936,blat.proc3829895.chain_2937,blat.proc3829895.chain_2939,blat.proc3829895.chain_2940,blat.proc3829895.chain_2942	11
scaffold_2	spliced_intron	2960170	2960333	+	asmbl_24284	none	STRG.1730.2,Trinity_GG_983_c0_g1_i2	2	STRG.1730.1,Trinity_GG_983_c0_g1_i1,blat.proc3829871.chain_1797	3
scaffold_18	alternate_exon	1751292	1751402	-	asmbl_19677,asmbl_19678	none	STRG.21056.1,blat.proc3829897.chain_1945,blat.proc3829897.chain_1946	3	blat.proc3829897.chain_1944	1
scaffold_5	alt_donor	19354747	19354748	-	asmbl_46274	none	STRG.7024.2,Trinity_GG_20921_c1_g1_i1,blat.proc3829889.chain_3000	3	Trinity_GG_20921_c1_g1_i2,blat.proc3829889.chain_2999	2
scaffold_15	starts_in_intron	12597923	12597923	-	asmbl_15608	none	blat.proc3829895.chain_3479	1	STRG.18702.1,Trinity_GG_27520_c0_g1_i3,Trinity_GG_27520_c0_g1_i5,blat.proc3829895.chain_3478,blat.proc3829895.chain_3481	5
scaffold_15	ends_in_intron	11415713	11415713	-	asmbl_15523	none	Trinity_GG_27478_c2_g1_i1,blat.proc3829895.chain_3399	2	STRG.18604.1,STRG.18604.3,blat.proc3829895.chain_3392,blat.proc3829895.chain_3393	4
scaffold_27	spliced_intron	1406245	1406809	-	asmbl_36705	none	STRG.28604.2	1	STRG.28604.1	1
scaffold_5	retained_intron	9085103	9085212	+	asmbl_44262,asmbl_44271	none	blat.proc3829873.chain_2418,blat.proc3829873.chain_2424	2	STRG.6237.1,STRG.6237.2,STRG.6237.3,STRG.6237.4,STRG.6237.5,blat.proc3829873.chain_2419,blat.proc3829873.chain_2421,blat.proc3829873.chain_2422,blat.proc3829873.chain_2423,blat.proc3829873.chain_2426	10
scaffold_9	skipped_exon	6846481	6847463	-	asmbl_55039	none	STRG.11185.3	1	STRG.11185.1,STRG.11185.2,STRG.11185.4,blat.proc3829891.chain_3258,blat.proc3829891.chain_3259,blat.proc3829891.chain_3260	6
scaffold_12	alternate_exon	2927115	2927734	-	asmbl_7468	none	STRG.14515.6	1	STRG.14515.5	1
scaffold_52	retained_exon	1667	1700	-	asmbl_46482,asmbl_46483	none	STRG.30037.1,STRG.30037.2,blat.proc3829901.chain_3148,blat.proc3829901.chain_3149	4	STRG.30037.3	1
scaffold_24	alternate_exon	7864384	7864430	-	asmbl_33063	none	STRG.26822.2,blat.proc3829901.chain_132	2	blat.proc3829901.chain_130	1
scaffold_643	retained_exon	1629	1880	-	asmbl_49429	none	STRG.30389.2	1	STRG.30389.1	1
scaffold_3	alt_donor	10274721	10274722	+	asmbl_40205	none	STRG.3461.2,blat.proc3829871.chain_3625	2	blat.proc3829871.chain_3624	1
scaffold_5	ends_in_intron	19373771	19373771	-	asmbl_46282,asmbl_46284	none	STRG.7028.4,STRG.7028.5,blat.proc3829889.chain_3037	3	STRG.7028.1,Trinity_GG_20939_c0_g1_i1,blat.proc3829889.chain_3036	3
scaffold_13	retained_exon	15512026	15512242	+	asmbl_11494	none	STRG.16580.4	1	STRG.16580.3	1
scaffold_7	starts_in_intron	10267474	10267474	-	asmbl_49923	none	blat.proc3829891.chain_1464	1	STRG.9189.1,blat.proc3829891.chain_1465	2
scaffold_25	retained_intron	6324770	6324860	-	asmbl_34330,asmbl_34331	none	STRG.27499.2,Trinity_GG_32449_c0_g1_i7,blat.proc3829901.chain_863	3	STRG.27499.1,STRG.27499.3,blat.proc3829901.chain_861,blat.proc3829901.chain_862,blat.proc3829901.chain_864,blat.proc3829901.chain_865	6
scaffold_4	retained_exon	13762796	13762984	-	asmbl_41749	none	STRG.4997.2,blat.proc3829889.chain_1048	2	STRG.4997.3	1
scaffold_14	skipped_exon	2297643	2298415	+	asmbl_11829	none	STRG.16832.3	1	STRG.16832.1,STRG.16832.2,blat.proc3829879.chain_1488	3
scaffold_11	alt_acceptor	12904978	12904979	-	asmbl_7085	none	blat.proc3829893.chain_2638	1	STRG.14165.1,STRG.14165.2	2
scaffold_9	alt_donor	16665147	16665148	-	asmbl_55570	none	STRG.11800.1,blat.proc3829893.chain_191	2	STRG.11800.2,blat.proc3829893.chain_192	2
scaffold_5	retained_intron	8538359	8538561	-	asmbl_45599	none	Trinity_GG_20482_c0_g2_i2,blat.proc3829889.chain_2252	2	STRG.6191.1,STRG.6191.2,STRG.6191.3,STRG.6191.4,blat.proc3829889.chain_2246,blat.proc3829889.chain_2247,blat.proc3829889.chain_2248,blat.proc3829889.chain_2250,blat.proc3829889.chain_2251,blat.proc3829889.chain_2253	10
scaffold_25	alt_acceptor	5996624	5996625	-	asmbl_34273	none	STRG.27469.1	1	STRG.27469.2	1
scaffold_8	alt_donor	17302726	17302727	-	asmbl_53454	none	STRG.10645.3,blat.proc3829891.chain_2807	2	STRG.10645.4	1
scaffold_2	alternate_exon	18952346	18954428	+	asmbl_25290	none	STRG.2768.3	1	STRG.2768.2,Trinity_GG_1522_c0_g1_i1,Trinity_GG_1522_c0_g1_i7	3
scaffold_5	alt_acceptor	6290163	6290164	+	asmbl_44080,asmbl_44081	none	STRG.6032.1,STRG.6032.2	2	Trinity_GG_3287_c0_g1_i1,blat.proc3829873.chain_2167	2
scaffold_8	spliced_intron	4960014	4960245	-	asmbl_52809,asmbl_52810,asmbl_52813	none	STRG.9963.1,blat.proc3829891.chain_2102,blat.proc3829891.chain_2103,blat.proc3829891.chain_2104,blat.proc3829891.chain_2107	5	Trinity_GG_22561_c0_g1_i3,blat.proc3829891.chain_2106	2
scaffold_11	spliced_intron	8330044	8330165	-	asmbl_6838	none	STRG.13832.2,Trinity_GG_24759_c0_g1_i1,blat.proc3829893.chain_2295	3	STRG.13832.1,Trinity_GG_24759_c0_g1_i2,blat.proc3829893.chain_2296	3
scaffold_11	alt_donor	15833771	15833772	+	asmbl_6115,asmbl_6118	none	STRG.14312.3,blat.proc3829877.chain_2735	2	STRG.14312.1,STRG.14312.2,blat.proc3829877.chain_2734,blat.proc3829877.chain_2737	4
scaffold_16	alt_acceptor	1800986	1800987	-	asmbl_16125	none	STRG.19093.1,blat.proc3829897.chain_135	2	STRG.19093.2	1
scaffold_5	retained_intron	3935675	3935871	+	asmbl_43924	none	STRG.5856.1,Trinity_GG_3221_c0_g1_i3,blat.proc3829873.chain_2028	3	blat.proc3829873.chain_2029	1
scaffold_8	alternate_exon	2851101	2852372	-	asmbl_52711	none	STRG.9800.2,blat.proc3829891.chain_1949	2	blat.proc3829891.chain_1946	1
scaffold_2	alt_acceptor	6654765	6654766	+	asmbl_24514,asmbl_24515	none	STRG.2024.1,STRG.2024.2,blat.proc3829871.chain_2083,blat.proc3829871.chain_2085	4	Trinity_GG_1141_c0_g1_i1,blat.proc3829871.chain_2084	2
scaffold_12	skipped_exon	15212283	15213043	+	asmbl_9078	none	STRG.15307.3,Trinity_GG_8383_c0_g1_i3,blat.proc3829877.chain_3663	3	STRG.15307.1,STRG.15307.2,Trinity_GG_8383_c0_g1_i1,Trinity_GG_8383_c0_g1_i2,blat.proc3829877.chain_3665,blat.proc3829877.chain_3666	6
scaffold_10	spliced_intron	8492106	8492342	-	asmbl_3506	none	STRG.12599.1,Trinity_GG_24053_c0_g1_i1,blat.proc3829893.chain_1098	3	STRG.12599.2,blat.proc3829893.chain_1099	2
scaffold_23	ends_in_intron	10203506	10203506	-	asmbl_31850	none	Trinity_GG_31625_c0_g1_i3,blat.proc3829899.chain_3230	2	STRG.26215.1,STRG.26215.2,Trinity_GG_31625_c0_g1_i1,blat.proc3829899.chain_3228,blat.proc3829899.chain_3229	5
scaffold_4	retained_exon	16802877	16804247	-	asmbl_41964,asmbl_41965	none	STRG.5267.1,STRG.5267.2,blat.proc3829889.chain_1242	3	Trinity_GG_19912_c0_g1_i4,blat.proc3829889.chain_1243	2
scaffold_14	spliced_intron	3097650	3097893	+	asmbl_11872	none	STRG.16888.1,blat.proc3829879.chain_1619	2	blat.proc3829879.chain_1617	1
scaffold_12	starts_in_intron	12305804	12305804	+	asmbl_8949,asmbl_8950,asmbl_8953,asmbl_8954,asmbl_8955	none	STRG.15117.2,STRG.15117.3,STRG.15117.4,STRG.15117.5,STRG.15117.6,blat.proc3829877.chain_3595,blat.proc3829877.chain_3596	7	STRG.15117.1,blat.proc3829877.chain_3594	2
scaffold_14	alt_acceptor	11076256	11076257	-	asmbl_13427	none	STRG.17431.1	1	STRG.17431.2,STRG.17431.3,blat.proc3829895.chain_2140	3
scaffold_20	spliced_intron	10070223	10070662	-	asmbl_27003,asmbl_27004	none	STRG.23536.1,Trinity_GG_30137_c0_g1_i1,Trinity_GG_30137_c0_g1_i4,blat.proc3829899.chain_548,blat.proc3829899.chain_549	5	STRG.23536.2,Trinity_GG_30137_c0_g1_i2,blat.proc3829899.chain_547	3
scaffold_18	spliced_intron	822928	823047	+	asmbl_20351,asmbl_20352,asmbl_20354	none	STRG.20996.1,STRG.20996.2,blat.proc3829881.chain_1778,blat.proc3829881.chain_1781,blat.proc3829881.chain_1782	5	blat.proc3829881.chain_1779	1
scaffold_6	starts_in_intron	1093206	1093206	+	asmbl_46642	none	blat.proc3829873.chain_3315	1	STRG.7163.1,blat.proc3829873.chain_3314,blat.proc3829873.chain_3316	3
scaffold_2	spliced_intron	899777	899876	+	asmbl_24165,asmbl_24167	none	STRG.1568.1,STRG.1568.2,blat.proc3829871.chain_1644	3	Trinity_GG_900_c0_g1_i4,blat.proc3829871.chain_1642	2
scaffold_15	spliced_intron	15414145	15414258	+	asmbl_14730,asmbl_14733,asmbl_14736	none	STRG.18922.3,STRG.18922.5,blat.proc3829879.chain_3551,blat.proc3829879.chain_3553	4	STRG.18922.1,STRG.18922.2,STRG.18922.4,blat.proc3829879.chain_3552,blat.proc3829879.chain_3556	5
scaffold_13	retained_exon	5805415	5805510	+	asmbl_10879,asmbl_10880,asmbl_10881,asmbl_10886	none	STRG.15880.1,STRG.15880.2,STRG.15880.3,blat.proc3829879.chain_648,blat.proc3829879.chain_649	5	STRG.15880.4	1
scaffold_4	starts_in_intron	4850195	4850195	-	asmbl_41272	none	blat.proc3829889.chain_505	1	STRG.4374.1,blat.proc3829889.chain_504	2
scaffold_14	starts_in_intron	8370251	8370251	-	asmbl_13281	none	blat.proc3829895.chain_1950	1	STRG.17259.1,STRG.17259.2,blat.proc3829895.chain_1949	3
scaffold_5	spliced_intron	13067434	13067568	+	asmbl_44519	none	STRG.6526.1,blat.proc3829873.chain_2667	2	Trinity_GG_3560_c0_g1_i1,blat.proc3829873.chain_2665	2
scaffold_1	alt_donor	5996764	5996765	-	asmbl_316	none	STRG.403.3,blat.proc3829887.chain_312	2	blat.proc3829887.chain_308	1
scaffold_18	skipped_exon	1753434	1754444	-	asmbl_19678	none	blat.proc3829897.chain_1945	1	STRG.21056.1,blat.proc3829897.chain_1944,blat.proc3829897.chain_1946	3
scaffold_27	alt_acceptor	6258776	6258777	+	asmbl_36351,asmbl_36353	none	STRG.28995.3,blat.proc3829885.chain_2095	2	STRG.28995.2,blat.proc3829885.chain_2096,blat.proc3829885.chain_2097	3
scaffold_26	alternate_exon	5662973	5663046	-	asmbl_34889,asmbl_34891	none	blat.proc3829901.chain_1438,blat.proc3829901.chain_1442	2	STRG.28255.1,STRG.28255.2,STRG.28255.3,blat.proc3829901.chain_1436,blat.proc3829901.chain_1439,blat.proc3829901.chain_1443	6
scaffold_3	skipped_exon	6043268	6044119	-	asmbl_38834,asmbl_38837	none	STRG.3255.2,STRG.3255.7	2	STRG.3255.5	1
scaffold_26	skipped_exon	9829475	9830981	+	asmbl_35798	none	blat.proc3829885.chain_1545	1	STRG.28502.1,blat.proc3829885.chain_1546	2
scaffold_25	alt_donor	8700414	8700415	-	asmbl_34433	none	STRG.27678.2,blat.proc3829901.chain_954,blat.proc3829901.chain_957,blat.proc3829901.chain_960	4	STRG.27678.3,STRG.27678.5,blat.proc3829901.chain_953	3
scaffold_28	alt_acceptor	4458496	4458497	+	asmbl_38229	none	STRG.29604.2,Trinity_GG_16414_c0_g1_i1,blat.proc3829885.chain_2714	3	STRG.29604.1	1
scaffold_9	retained_intron	6920728	6921103	-	asmbl_55066	none	STRG.11195.1,blat.proc3829891.chain_3350	2	STRG.11195.2,blat.proc3829891.chain_3351,blat.proc3829891.chain_3352	3
scaffold_20	starts_in_intron	8352056	8352056	-	asmbl_26909	none	Trinity_GG_30067_c0_g1_i1,Trinity_GG_30067_c0_g1_i5	2	STRG.23372.1	1
scaffold_21	alt_acceptor	8283329	8283330	-	asmbl_27935	none	STRG.24352.2	1	STRG.24352.1,blat.proc3829899.chain_1456,blat.proc3829899.chain_1457	3
scaffold_26	alternate_exon	4813014	4813195	-	asmbl_34870	none	STRG.28181.1,blat.proc3829901.chain_1375	2	STRG.28181.2,blat.proc3829901.chain_1376	2
scaffold_9	starts_in_intron	2798564	2798564	+	asmbl_53846	none	Trinity_GG_6054_c0_g1_i10,blat.proc3829875.chain_3366	2	STRG.10912.1,STRG.10912.2,Trinity_GG_6054_c0_g1_i2,Trinity_GG_6054_c0_g1_i7,blat.proc3829875.chain_3367,blat.proc3829875.chain_3369,blat.proc3829875.chain_3372	7
scaffold_10	starts_in_intron	8342079	8342079	-	asmbl_3499	none	Trinity_GG_24052_c0_g1_i1,blat.proc3829893.chain_1097	2	STRG.12593.1,blat.proc3829893.chain_1096	2
scaffold_7	retained_intron	15020785	15020865	-	asmbl_50169	none	blat.proc3829891.chain_1745	1	STRG.9508.1,blat.proc3829891.chain_1746	2
scaffold_21	ends_in_intron	11272490	11272490	-	asmbl_28139	none	Trinity_GG_30741_c0_g1_i3,blat.proc3829899.chain_1687	2	STRG.24588.1,STRG.24588.2,blat.proc3829899.chain_1688,blat.proc3829899.chain_1689,blat.proc3829899.chain_1692	5
scaffold_21	ends_in_intron	1068913	1068913	+	asmbl_28346	none	STRG.23771.4,Trinity_GG_13124_c1_g1_i1,blat.proc3829883.chain_850	3	STRG.23771.1,STRG.23771.2,STRG.23771.3,Trinity_GG_13124_c0_g1_i5,blat.proc3829883.chain_848,blat.proc3829883.chain_849	6
scaffold_8	ends_in_intron	16241736	16241736	-	asmbl_53382	none	Trinity_GG_22873_c0_g1_i3,blat.proc3829891.chain_2698	2	STRG.10604.1,blat.proc3829891.chain_2697	2
scaffold_13	alternate_exon	357167	357240	-	asmbl_9271,asmbl_9272	none	Trinity_GG_25667_c0_g1_i4,Trinity_GG_25667_c0_g1_i5,blat.proc3829895.chain_169,blat.proc3829895.chain_170	4	STRG.15424.1,Trinity_GG_25667_c0_g1_i10,Trinity_GG_25667_c0_g1_i6,Trinity_GG_25667_c0_g1_i7,Trinity_GG_25667_c0_g1_i8,blat.proc3829895.chain_167,blat.proc3829895.chain_168,blat.proc3829895.chain_171,blat.proc3829895.chain_172,blat.proc3829895.chain_174	10
scaffold_6	alt_acceptor	299334	299335	+	asmbl_46601,asmbl_46604	none	STRG.7082.2,Trinity_GG_3916_c0_g1_i8,blat.proc3829873.chain_3249	3	STRG.7082.4,Trinity_GG_3916_c0_g1_i2,blat.proc3829873.chain_3251	3
scaffold_2	spliced_intron	16280177	16280329	+	asmbl_25127,asmbl_25128,asmbl_25130,asmbl_25132,asmbl_25133,asmbl_25135,asmbl_25136	none	STRG.2564.1,STRG.2564.3,blat.proc3829871.chain_2777,blat.proc3829871.chain_2781,blat.proc3829871.chain_2782,blat.proc3829871.chain_2783,blat.proc3829871.chain_2785,blat.proc3829871.chain_2786	8	blat.proc3829871.chain_2780,blat.proc3829871.chain_2784	2
scaffold_14	starts_in_intron	3145533	3145533	+	asmbl_11878	none	Trinity_GG_9291_c0_g1_i1,blat.proc3829879.chain_1609	2	STRG.16890.1,Trinity_GG_9291_c0_g1_i2,Trinity_GG_9291_c0_g1_i3,blat.proc3829879.chain_1610,blat.proc3829879.chain_1611	5
scaffold_6	alt_donor	16876793	16876794	-	asmbl_49105	none	STRG.8397.2,blat.proc3829891.chain_722	2	STRG.8397.3,blat.proc3829891.chain_723	2
scaffold_3	alternate_exon	12577657	12577680	+	asmbl_40365	none	blat.proc3829873.chain_68	1	STRG.3651.1,blat.proc3829873.chain_67	2
scaffold_43	spliced_intron	782	922	-	asmbl_43672	none	STRG.30025.3	1	STRG.30025.2	1
scaffold_15	alternate_exon	7436230	7437363	-	asmbl_15318,asmbl_15319	none	STRG.18330.2,STRG.18330.3,Trinity_GG_27324_c1_g1_i2,blat.proc3829895.chain_3098,blat.proc3829895.chain_3101,blat.proc3829895.chain_3102	6	STRG.18330.1,blat.proc3829895.chain_3100	2
scaffold_3	alt_acceptor	947653	947654	-	asmbl_38644	none	blat.proc3829887.chain_2706	1	STRG.2916.1	1
scaffold_2	skipped_exon	3862130	3864995	-	asmbl_23037	none	STRG.1819.2	1	STRG.1819.1,blat.proc3829887.chain_1594	2
scaffold_10	starts_in_intron	9035258	9035258	+	asmbl_4634	none	STRG.12642.2,blat.proc3829877.chain_1216	2	STRG.12642.1,Trinity_GG_6975_c0_g1_i2,blat.proc3829877.chain_1217	3
scaffold_17	starts_in_intron	5071478	5071478	+	asmbl_17932,asmbl_17933	none	blat.proc3829881.chain_968,blat.proc3829881.chain_969	2	STRG.20221.1,STRG.20221.2,STRG.20221.3,STRG.20221.4,STRG.20221.5,Trinity_GG_11042_c0_g1_i2,Trinity_GG_11042_c0_g1_i3,blat.proc3829881.chain_970,blat.proc3829881.chain_971	9
scaffold_5	spliced_intron	7770850	7770942	+	asmbl_44173	none	STRG.6151.2	1	STRG.6151.1	1
scaffold_21	alternate_exon	728908	728948	+	asmbl_28315	none	STRG.23754.1	1	STRG.23754.2,STRG.23754.4,STRG.23754.5,Trinity_GG_13126_c0_g1_i1,Trinity_GG_13126_c0_g3_i1,blat.proc3829883.chain_853,blat.proc3829883.chain_855	7
scaffold_14	alt_acceptor	6062175	6062176	+	asmbl_12028	none	STRG.17052.1	1	STRG.17052.2,Trinity_GG_9379_c0_g1_i1,blat.proc3829879.chain_1769	3
scaffold_22	alt_acceptor	3792609	3792610	-	asmbl_29953	none	STRG.24796.3	1	STRG.24796.1,STRG.24796.2,blat.proc3829899.chain_1847,blat.proc3829899.chain_1848	4
scaffold_24	alt_acceptor	2515065	2515066	+	asmbl_32112,asmbl_32114	none	STRG.26452.1,STRG.26452.2,blat.proc3829883.chain_3355	3	STRG.26452.4,blat.proc3829883.chain_3354	2
scaffold_6	alt_acceptor	7267969	7267970	-	asmbl_48423	none	STRG.7624.1,blat.proc3829889.chain_3651	2	blat.proc3829889.chain_3652	1
scaffold_22	skipped_exon	322655	323437	+	asmbl_29132,asmbl_29136	none	STRG.24670.1,blat.proc3829883.chain_1728,blat.proc3829883.chain_1731	3	STRG.24670.3,blat.proc3829883.chain_1729	2
scaffold_14	retained_intron	2263794	2264034	-	asmbl_12909	none	blat.proc3829895.chain_1520	1	STRG.16824.1,blat.proc3829895.chain_1521	2
scaffold_2	ends_in_intron	4555697	4555697	-	asmbl_23111	none	Trinity_GG_18054_c1_g1_i1,blat.proc3829887.chain_1717	2	STRG.1882.2	1
scaffold_4	starts_in_intron	3302626	3302626	+	asmbl_42501	none	Trinity_GG_2368_c0_g1_i2	1	STRG.4257.1	1
scaffold_2	spliced_intron	14203673	14203696	-	asmbl_23592	none	blat.proc3829887.chain_2299	1	STRG.2411.3,blat.proc3829887.chain_2301	2
scaffold_16	starts_in_intron	3569311	3569311	-	asmbl_16159	none	Trinity_GG_27773_c0_g1_i7,blat.proc3829897.chain_191	2	STRG.19160.1,STRG.19160.2,STRG.19160.3,Trinity_GG_27773_c0_g1_i6,Trinity_GG_27773_c0_g1_i8,blat.proc3829897.chain_190,blat.proc3829897.chain_192	7
scaffold_21	starts_in_intron	676084	676084	-	asmbl_27366,asmbl_27368	none	STRG.23740.1,blat.proc3829899.chain_806	2	STRG.23740.2,STRG.23740.3,STRG.23740.4,STRG.23740.5,blat.proc3829899.chain_807	5
scaffold_19	alternate_exon	3679856	3683128	+	asmbl_22132,asmbl_22133,asmbl_22135	none	STRG.22046.1,STRG.22046.3,STRG.22046.4	3	STRG.22046.7	1
scaffold_5	retained_intron	10296210	10296333	-	asmbl_45722	none	blat.proc3829889.chain_2410	1	STRG.6324.1,STRG.6324.2,STRG.6324.3,blat.proc3829889.chain_2411,blat.proc3829889.chain_2412	5
scaffold_2	spliced_intron	7134503	7134669	+	asmbl_24561	none	STRG.2047.3,blat.proc3829871.chain_2122	2	STRG.2047.2	1
scaffold_126	alt_acceptor	3318	3319	+	asmbl_9244	none	STRG.30134.2	1	STRG.30134.1,blat.proc3829885.chain_3200	2
scaffold_16	retained_exon	5391350	5391376	-	asmbl_16266,asmbl_16269	none	STRG.19274.1,blat.proc3829897.chain_328,blat.proc3829897.chain_329	3	STRG.19274.3,blat.proc3829897.chain_330	2
scaffold_19	retained_intron	12246328	12246698	-	asmbl_21682,asmbl_21684,asmbl_21686	none	STRG.22540.2,Trinity_GG_29555_c0_g1_i6,Trinity_GG_29555_c0_g1_i7,Trinity_GG_29555_c0_g1_i8,blat.proc3829897.chain_3242,blat.proc3829897.chain_3245,blat.proc3829897.chain_3247	7	STRG.22540.1,Trinity_GG_29555_c0_g1_i1,Trinity_GG_29555_c0_g1_i2,Trinity_GG_29555_c0_g1_i5,blat.proc3829897.chain_3241,blat.proc3829897.chain_3244,blat.proc3829897.chain_3246	7
scaffold_24	alt_donor	6855414	6855415	-	asmbl_32981	none	STRG.26718.2,blat.proc3829901.chain_41	2	STRG.26718.1,blat.proc3829901.chain_40	2
scaffold_16	retained_exon	3710861	3710953	-	asmbl_16167	none	blat.proc3829897.chain_169	1	STRG.19167.1,blat.proc3829897.chain_170	2
scaffold_11	alt_donor	8192979	8192980	-	asmbl_6832	none	STRG.13814.1,Trinity_GG_24748_c0_g1_i3,blat.proc3829893.chain_2274	3	STRG.13814.2,Trinity_GG_24748_c0_g1_i1,blat.proc3829893.chain_2275	3
scaffold_9	starts_in_intron	13305594	13305594	-	asmbl_55393	none	Trinity_GG_23412_c0_g1_i2	1	STRG.11618.1,STRG.11618.2,blat.proc3829891.chain_3709	3
scaffold_15	ends_in_intron	11138830	11138830	-	asmbl_15505	none	blat.proc3829895.chain_3285	1	blat.proc3829895.chain_3283,blat.proc3829895.chain_3284,blat.proc3829895.chain_3286,blat.proc3829895.chain_3287,blat.proc3829895.chain_3288,blat.proc3829895.chain_3289	6
scaffold_4	ends_in_intron	5033934	5033934	-	asmbl_41291	none	Trinity_GG_19486_c0_g2_i1,blat.proc3829889.chain_531	2	STRG.4398.1	1
scaffold_20	retained_intron	253640	253910	-	asmbl_26412	none	STRG.22706.1	1	STRG.22706.2	1
scaffold_17	retained_intron	8355294	8355515	+	asmbl_18115	none	STRG.20446.3,Trinity_GG_11203_c0_g1_i3,blat.proc3829881.chain_1235	3	STRG.20446.2,blat.proc3829881.chain_1236	2
scaffold_2	retained_exon	12653219	12653271	-	asmbl_23489	none	STRG.2312.1,Trinity_GG_18295_c0_g1_i2,blat.proc3829887.chain_2180	3	STRG.2312.2,Trinity_GG_18295_c0_g1_i1,blat.proc3829887.chain_2179	3
scaffold_28	ends_in_intron	7820432	7820432	-	asmbl_37747	none	Trinity_GG_33732_c0_g1_i1	1	STRG.29829.1	1
scaffold_10	alternate_exon	2717967	2718192	+	asmbl_4278	none	STRG.12081.1,blat.proc3829877.chain_816	2	STRG.12081.2,blat.proc3829877.chain_817	2
scaffold_16	starts_in_intron	7501039	7501039	+	asmbl_17137	none	Trinity_GG_10632_c0_g1_i1,blat.proc3829881.chain_288	2	STRG.19388.1,blat.proc3829881.chain_287	2
scaffold_5	retained_intron	10380174	10380270	-	asmbl_45739	none	blat.proc3829889.chain_2440	1	STRG.6330.1,STRG.6330.2,STRG.6330.3,blat.proc3829889.chain_2439,blat.proc3829889.chain_2441	5
scaffold_12	spliced_intron	3352547	3352645	+	asmbl_8513	none	STRG.14544.1	1	Trinity_GG_8028_c0_g1_i2	1
scaffold_1	alt_donor	974909	974910	-	asmbl_38	none	Trinity_GG_17049_c1_g1_i1,blat.proc3829885.chain_3722	2	STRG.57.2	1
scaffold_19	alt_acceptor	728426	728427	+	asmbl_22006,asmbl_22007	none	STRG.21851.1,STRG.21851.2	2	STRG.21851.3,STRG.21851.4,blat.proc3829881.chain_2836	3
scaffold_5	spliced_intron	19029108	19029499	-	asmbl_46265,asmbl_46267	none	STRG.7018.1,blat.proc3829889.chain_3008	2	STRG.7018.2,blat.proc3829889.chain_3005	2
scaffold_21	ends_in_intron	10965400	10965400	+	asmbl_28911	none	Trinity_GG_13542_c0_g1_i7,blat.proc3829883.chain_1565	2	STRG.24559.1,STRG.24559.3,Trinity_GG_13542_c0_g1_i4,Trinity_GG_13542_c0_g1_i6,blat.proc3829883.chain_1566,blat.proc3829883.chain_1567,blat.proc3829883.chain_1568	7
scaffold_6	retained_intron	7174460	7174541	+	asmbl_46994	none	blat.proc3829873.chain_3737	1	STRG.7621.1,STRG.7621.2,STRG.7621.3,STRG.7621.4,blat.proc3829873.chain_3736,blat.proc3829873.chain_3739	6
scaffold_4	spliced_intron	4413750	4414043	+	asmbl_42571,asmbl_42577,asmbl_42589,asmbl_42593	none	STRG.4344.1,STRG.4344.3,STRG.4344.4,blat.proc3829873.chain_682,blat.proc3829873.chain_694,blat.proc3829873.chain_697	6	blat.proc3829873.chain_684,blat.proc3829873.chain_691,blat.proc3829873.chain_693	3
scaffold_2	alternate_exon	7323564	7324281	+	asmbl_24598	none	Trinity_GG_1176_c0_g1_i4,blat.proc3829871.chain_2159	2	STRG.2062.3,Trinity_GG_1176_c0_g1_i1,blat.proc3829871.chain_2160	3
scaffold_6	alt_acceptor	12520974	12520975	-	asmbl_48749,asmbl_48753	none	STRG.8002.2,blat.proc3829891.chain_300	2	STRG.8002.1,STRG.8002.4,blat.proc3829891.chain_301,blat.proc3829891.chain_302	4
scaffold_19	alternate_exon	6831851	6831939	-	asmbl_21440	none	STRG.22186.2	1	STRG.22186.1	1
scaffold_1	alt_donor	9196526	9196527	+	asmbl_1954	none	STRG.608.2,Trinity_GG_384_c0_g1_i2,blat.proc3829871.chain_667	3	STRG.608.1,STRG.608.3,Trinity_GG_384_c0_g1_i1,blat.proc3829871.chain_666	4
scaffold_15	alternate_exon	6883099	6883726	-	asmbl_15277,asmbl_15284	none	Trinity_GG_27246_c0_g1_i4,blat.proc3829895.chain_2938,blat.proc3829895.chain_2941	3	STRG.18290.1,STRG.18290.5,STRG.18290.6,blat.proc3829895.chain_2937,blat.proc3829895.chain_2939,blat.proc3829895.chain_2942	6
scaffold_24	retained_exon	6833624	6833656	+	asmbl_32354,asmbl_32358	none	STRG.26717.1,STRG.26717.4,blat.proc3829883.chain_3660	3	STRG.26717.2,blat.proc3829883.chain_3661,blat.proc3829883.chain_3662	3
scaffold_4	spliced_intron	6304956	6305145	+	asmbl_42718,asmbl_42721,asmbl_42723,asmbl_42727	none	STRG.4502.1,STRG.4502.2,Trinity_GG_2497_c0_g1_i1,Trinity_GG_2497_c0_g1_i9,blat.proc3829873.chain_865,blat.proc3829873.chain_866,blat.proc3829873.chain_870	7	Trinity_GG_2497_c0_g1_i2,Trinity_GG_2497_c0_g1_i6,Trinity_GG_2497_c0_g1_i8,blat.proc3829873.chain_863,blat.proc3829873.chain_867,blat.proc3829873.chain_868,blat.proc3829873.chain_871	7
scaffold_24	alt_acceptor	162865	162866	-	asmbl_32693	none	STRG.26299.2,Trinity_GG_31713_c0_g1_i3,blat.proc3829899.chain_3374	3	STRG.26299.1	1
scaffold_6	starts_in_intron	15762090	15762090	-	asmbl_49019	none	blat.proc3829891.chain_538	1	STRG.8311.1,STRG.8311.2	2
scaffold_18	alt_donor	1324811	1324812	+	asmbl_20361,asmbl_20365	none	STRG.21011.1,blat.proc3829881.chain_1877,blat.proc3829881.chain_1878	3	STRG.21011.2,STRG.21011.3,blat.proc3829881.chain_1880	3
scaffold_10	ends_in_intron	5147617	5147617	-	asmbl_3259	none	blat.proc3829893.chain_788	1	STRG.12324.1,blat.proc3829893.chain_787	2
scaffold_10	spliced_intron	9041054	9041325	+	asmbl_4636,asmbl_4637	none	STRG.12644.1,Trinity_GG_6976_c0_g1_i1,blat.proc3829877.chain_1219,blat.proc3829877.chain_1220	4	Trinity_GG_6976_c0_g1_i2,blat.proc3829877.chain_1218	2
scaffold_19	alt_donor	12812802	12812803	-	asmbl_21753	none	STRG.22587.2,Trinity_GG_29584_c0_g1_i2,blat.proc3829897.chain_3335	3	STRG.22587.1,blat.proc3829897.chain_3334	2
scaffold_7	alt_acceptor	1236199	1236200	+	asmbl_50476	none	STRG.8627.9,Trinity_GG_4740_c1_g1_i1	2	STRG.8627.3,STRG.8627.7,STRG.8627.8	3
scaffold_7	ends_in_intron	706618	706618	-	asmbl_49501	none	STRG.8597.3,Trinity_GG_21931_c0_g1_i6,blat.proc3829891.chain_953	3	STRG.8597.2,Trinity_GG_21931_c0_g1_i2,blat.proc3829891.chain_952,blat.proc3829891.chain_954,blat.proc3829891.chain_955	5
scaffold_26	retained_intron	5487654	5488597	+	asmbl_35525,asmbl_35527	none	STRG.28241.1,Trinity_GG_15567_c0_g1_i5,Trinity_GG_15567_c0_g1_i8,blat.proc3829885.chain_1186,blat.proc3829885.chain_1187	5	STRG.28241.2,STRG.28241.4,Trinity_GG_15567_c0_g1_i7,blat.proc3829885.chain_1185	4
scaffold_10	starts_in_intron	15423936	15423936	+	asmbl_4959	none	Trinity_GG_7191_c1_g1_i3	1	STRG.13046.1,blat.proc3829877.chain_1606	2
scaffold_16	ends_in_intron	11433283	11433283	-	asmbl_16528	none	blat.proc3829897.chain_635	1	STRG.19659.1,blat.proc3829897.chain_634	2
scaffold_8	starts_in_intron	16388908	16388908	+	asmbl_52446	none	blat.proc3829875.chain_3142	1	STRG.10611.1,STRG.10611.2,STRG.10611.3,Trinity_GG_5913_c0_g1_i2,Trinity_GG_5913_c0_g1_i3,Trinity_GG_5913_c0_g1_i4,Trinity_GG_5913_c0_g1_i5,blat.proc3829875.chain_3141,blat.proc3829875.chain_3143,blat.proc3829875.chain_3144,blat.proc3829875.chain_3145	11
scaffold_9	starts_in_intron	1711694	1711694	-	asmbl_54809	none	STRG.10855.1	1	STRG.10855.2,blat.proc3829891.chain_3029	2
scaffold_24	alt_donor	6841939	6841940	+	asmbl_32361	none	STRG.26715.1,Trinity_GG_14780_c0_g1_i1,blat.proc3829883.chain_3631	3	STRG.26715.2,Trinity_GG_14780_c0_g1_i2,blat.proc3829883.chain_3630	3
scaffold_21	starts_in_intron	1059054	1059054	+	asmbl_28346,asmbl_28347	none	STRG.23771.3,STRG.23771.4,blat.proc3829883.chain_849	3	STRG.23771.1,STRG.23771.2,Trinity_GG_13124_c0_g1_i5,blat.proc3829883.chain_848	4
scaffold_16	alt_donor	12649679	12649680	+	asmbl_17445	none	STRG.19746.2,blat.proc3829881.chain_626	2	STRG.19746.1	1
scaffold_7	starts_in_intron	11918832	11918832	-	asmbl_49989	none	STRG.9288.1	1	STRG.9288.2,Trinity_GG_22258_c0_g1_i3,blat.proc3829891.chain_1549	3
scaffold_5	alternate_exon	10890168	10890300	-	asmbl_45768	none	blat.proc3829889.chain_2354	1	STRG.6359.2,blat.proc3829889.chain_2353,blat.proc3829889.chain_2356	3
scaffold_14	starts_in_intron	6649165	6649165	-	asmbl_13127	none	Trinity_GG_26599_c2_g1_i1,blat.proc3829895.chain_1788	2	STRG.17095.1,STRG.17095.3,blat.proc3829895.chain_1785	3
scaffold_17	spliced_intron	14729874	14729921	+	asmbl_18541	none	STRG.20932.2	1	STRG.20932.1,Trinity_GG_11494_c0_g1_i1,blat.proc3829881.chain_1750	3
scaffold_21	alternate_exon	5774120	5775179	-	asmbl_27722	none	blat.proc3829899.chain_1202	1	STRG.24099.1,blat.proc3829899.chain_1196,blat.proc3829899.chain_1198,blat.proc3829899.chain_1200	4
scaffold_736	spliced_intron	2408	2427	+	asmbl_51591	none	STRG.30426.1	1	Trinity_GG_16831_c0_g1_i1	1
scaffold_6	alternate_exon	8468067	8468646	-	asmbl_48489	none	STRG.7709.1,blat.proc3829889.chain_3644	2	STRG.7709.2,blat.proc3829889.chain_3645	2
scaffold_17	alternate_exon	10025766	10025901	+	asmbl_18282,asmbl_18283	none	STRG.20606.2,STRG.20606.3	2	STRG.20606.1,Trinity_GG_11248_c0_g1_i4,blat.proc3829881.chain_1338	3
scaffold_22	starts_in_intron	1762105	1762105	-	asmbl_29914	none	blat.proc3829899.chain_1864	1	STRG.24754.1,blat.proc3829899.chain_1865	2
scaffold_13	alternate_exon	5187932	5188021	-	asmbl_9638	none	STRG.15805.2,blat.proc3829895.chain_547	2	STRG.15805.1,blat.proc3829895.chain_546	2
scaffold_15	alt_donor	15569502	15569503	+	asmbl_14759	none	STRG.18941.2,blat.proc3829879.chain_3521	2	STRG.18941.1,Trinity_GG_10377_c0_g1_i1,blat.proc3829879.chain_3522	3
scaffold_4	retained_intron	4433640	4433862	+	asmbl_42599	none	STRG.4341.1,blat.proc3829873.chain_731	2	STRG.4341.2,blat.proc3829873.chain_730	2
scaffold_1	alt_acceptor	5732064	5732065	-	asmbl_294,asmbl_296,asmbl_297	none	STRG.379.1,Trinity_GG_17221_c0_g1_i4,blat.proc3829887.chain_257,blat.proc3829887.chain_258,blat.proc3829887.chain_259	5	STRG.379.2,blat.proc3829887.chain_260	2
scaffold_13	alternate_exon	9326794	9332962	-	asmbl_9976	none	STRG.16187.1,blat.proc3829895.chain_855	2	STRG.16187.4	1
scaffold_13	ends_in_intron	11601576	11601576	+	asmbl_11280	none	STRG.16295.3	1	STRG.16295.1,STRG.16295.2,STRG.16295.5,blat.proc3829879.chain_1014,blat.proc3829879.chain_1015,blat.proc3829879.chain_1016,blat.proc3829879.chain_1018,blat.proc3829879.chain_1019,blat.proc3829879.chain_1020,blat.proc3829879.chain_1023	10
scaffold_15	alt_donor	6793688	6793689	-	asmbl_15274	none	STRG.18288.3	1	STRG.18288.2,blat.proc3829895.chain_3044	2
scaffold_13	spliced_intron	350724	350855	-	asmbl_9268,asmbl_9269,asmbl_9271,asmbl_9272,asmbl_9273,asmbl_9274	none	STRG.15424.1,Trinity_GG_25667_c0_g1_i10,Trinity_GG_25667_c0_g1_i4,Trinity_GG_25667_c0_g1_i5,Trinity_GG_25667_c0_g1_i6,Trinity_GG_25667_c0_g1_i7,blat.proc3829895.chain_167,blat.proc3829895.chain_169,blat.proc3829895.chain_170,blat.proc3829895.chain_171,blat.proc3829895.chain_172,blat.proc3829895.chain_173	12	Trinity_GG_25667_c0_g1_i8,blat.proc3829895.chain_168	2
scaffold_16	alt_acceptor	768067	768068	-	asmbl_16075	none	STRG.19043.2	1	STRG.19043.1	1
scaffold_4	retained_exon	13114623	13114670	-	asmbl_41715,asmbl_41718,asmbl_41719	none	STRG.4951.2,STRG.4951.3,STRG.4951.4,blat.proc3829889.chain_1009	4	STRG.4951.1,blat.proc3829889.chain_1007,blat.proc3829889.chain_1008	3
scaffold_2	retained_exon	7469728	7469821	-	asmbl_23283	none	STRG.2075.3,Trinity_GG_18127_c0_g1_i18,blat.proc3829887.chain_1893	3	Trinity_GG_18127_c0_g1_i8,blat.proc3829887.chain_1895	2
scaffold_10	spliced_intron	8897598	8897769	-	asmbl_3532,asmbl_3533,asmbl_3534,asmbl_3535,asmbl_3536,asmbl_3539,asmbl_3540,asmbl_3542	none	STRG.12629.1,blat.proc3829893.chain_1125,blat.proc3829893.chain_1129,blat.proc3829893.chain_1130,blat.proc3829893.chain_1131,blat.proc3829893.chain_1132,blat.proc3829893.chain_1133,blat.proc3829893.chain_1136	8	blat.proc3829893.chain_1127,blat.proc3829893.chain_1134	2
scaffold_5	alt_donor	6933179	6933180	+	asmbl_44126	none	STRG.6099.1,blat.proc3829873.chain_2156	2	blat.proc3829873.chain_2155	1
scaffold_27	spliced_intron	4123018	4123064	+	asmbl_36217	none	STRG.28851.2	1	STRG.28851.1,Trinity_GG_15962_c0_g1_i1,Trinity_GG_15962_c0_g1_i3,blat.proc3829885.chain_1921,blat.proc3829885.chain_1922	5
scaffold_10	retained_exon	5751001	5751048	-	asmbl_3298,asmbl_3299	none	STRG.12399.1,blat.proc3829893.chain_837,blat.proc3829893.chain_840	3	STRG.12399.2,blat.proc3829893.chain_836	2
scaffold_6	spliced_intron	2947048	2947168	-	asmbl_48152	none	STRG.7294.1,blat.proc3829889.chain_3307	2	blat.proc3829889.chain_3306	1
scaffold_23	alternate_exon	6318077	6318195	-	asmbl_31696	none	STRG.25958.2,blat.proc3829899.chain_3039	2	STRG.25958.1	1
scaffold_1	alt_donor	12489339	12489340	+	asmbl_2215	none	STRG.859.3	1	STRG.859.2,Trinity_GG_525_c0_g1_i2,blat.proc3829871.chain_944	3
scaffold_12	skipped_exon	15094938	15097184	-	asmbl_8178	none	STRG.15303.2	1	Trinity_GG_25549_c1_g1_i5,blat.proc3829893.chain_3693	2
scaffold_23	alt_donor	7279761	7279762	-	asmbl_31742	none	STRG.26034.3	1	STRG.26034.2	1
scaffold_2	spliced_intron	17708369	17708455	-	asmbl_23751,asmbl_23753	none	STRG.2660.1,STRG.2660.2,blat.proc3829887.chain_2486	3	STRG.2660.3,blat.proc3829887.chain_2487	2
scaffold_7	alternate_exon	15315769	15319694	-	asmbl_50186,asmbl_50188	none	STRG.9540.2,STRG.9540.3,Trinity_GG_22371_c0_g1_i1,blat.proc3829891.chain_1774,blat.proc3829891.chain_1775	5	STRG.9540.1,Trinity_GG_22371_c0_g2_i1,blat.proc3829891.chain_1776	3
scaffold_20	retained_intron	1671485	1671524	+	asmbl_25597	none	STRG.22891.1,Trinity_GG_12623_c0_g1_i1	2	STRG.22891.2	1
scaffold_13	retained_exon	2340912	2340951	+	asmbl_10591	none	STRG.15543.9	1	STRG.15543.3,STRG.15543.4,STRG.15543.6,STRG.15543.7,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_156,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161,blat.proc3829879.chain_162	13
scaffold_1	alternate_exon	14363969	14364252	-	asmbl_912	none	STRG.1033.4,blat.proc3829887.chain_883	2	STRG.1033.3	1
scaffold_1	retained_intron	5739762	5739896	+	asmbl_1766	none	Trinity_GG_223_c1_g1_i1,blat.proc3829871.chain_377	2	STRG.382.2,blat.proc3829871.chain_370,blat.proc3829871.chain_371,blat.proc3829871.chain_372,blat.proc3829871.chain_373,blat.proc3829871.chain_375	6
scaffold_18	alt_donor	7554249	7554250	-	asmbl_19992	none	STRG.21448.3	1	STRG.21448.1,STRG.21448.2,blat.proc3829897.chain_2296	3
scaffold_11	alt_acceptor	11935485	11935486	-	asmbl_7020,asmbl_7021,asmbl_7023	none	STRG.14160.1,STRG.14160.2,STRG.14160.3	3	STRG.14160.4,STRG.14160.5	2
scaffold_11	alt_acceptor	3018597	3018598	+	asmbl_5354	none	STRG.13417.1	1	STRG.13417.2,blat.proc3829877.chain_1808	2
scaffold_1	spliced_intron	1271968	1272117	-	asmbl_60	none	STRG.74.1,Trinity_GG_17054_c0_g1_i1,blat.proc3829885.chain_3739	3	Trinity_GG_17054_c0_g1_i2,blat.proc3829885.chain_3738	2
scaffold_11	alt_donor	1983756	1983757	-	asmbl_6438	none	STRG.13349.2,Trinity_GG_24491_c0_g1_i5,blat.proc3829893.chain_1814,blat.proc3829893.chain_1815	4	STRG.13349.1,blat.proc3829893.chain_1817	2
scaffold_17	starts_in_intron	8879995	8879995	+	asmbl_18168	none	blat.proc3829881.chain_1217	1	STRG.20493.1,blat.proc3829881.chain_1216	2
scaffold_11	starts_in_intron	16466643	16466643	-	asmbl_7201	none	STRG.14328.3	1	STRG.14328.2,STRG.14328.4	2
scaffold_1	spliced_intron	12335370	12335520	-	asmbl_710,asmbl_711,asmbl_715,asmbl_716,asmbl_717,asmbl_718,asmbl_719,asmbl_720,asmbl_721,asmbl_722,asmbl_723	none	STRG.843.1,STRG.843.2,blat.proc3829887.chain_734,blat.proc3829887.chain_735,blat.proc3829887.chain_736,blat.proc3829887.chain_737,blat.proc3829887.chain_739,blat.proc3829887.chain_741,blat.proc3829887.chain_743,blat.proc3829887.chain_744,blat.proc3829887.chain_745,blat.proc3829887.chain_746	12	blat.proc3829887.chain_738,blat.proc3829887.chain_742	2
scaffold_3	alt_acceptor	6041931	6041932	-	asmbl_38833,asmbl_38834,asmbl_38837	none	STRG.3255.1,STRG.3255.2,STRG.3255.7	3	STRG.3255.5	1
scaffold_10	spliced_intron	7827883	7827959	-	asmbl_3478	none	STRG.12564.1,blat.proc3829893.chain_1049	2	Trinity_GG_24026_c0_g1_i1,blat.proc3829893.chain_1048	2
scaffold_7	retained_exon	12390032	12390109	-	asmbl_50013,asmbl_50015,asmbl_50017,asmbl_50019,asmbl_50020,asmbl_50021	none	STRG.9328.1,blat.proc3829891.chain_1531,blat.proc3829891.chain_1533,blat.proc3829891.chain_1534,blat.proc3829891.chain_1536,blat.proc3829891.chain_1537,blat.proc3829891.chain_1538	7	blat.proc3829891.chain_1535	1
scaffold_15	starts_in_intron	6103588	6103588	-	asmbl_15256	none	blat.proc3829895.chain_3031	1	STRG.18262.1,blat.proc3829895.chain_3032,blat.proc3829895.chain_3033	3
scaffold_10	spliced_intron	1980607	1981557	-	asmbl_3005	none	STRG.12045.2,blat.proc3829893.chain_508	2	STRG.12045.1,blat.proc3829893.chain_509	2
scaffold_23	spliced_intron	6289367	6289481	-	asmbl_31687,asmbl_31688,asmbl_31691,asmbl_31692,asmbl_31694	none	STRG.25954.1,STRG.25954.2,Trinity_GG_31552_c0_g1_i2,Trinity_GG_31552_c0_g1_i4,Trinity_GG_31552_c0_g1_i5,Trinity_GG_31552_c0_g1_i7,blat.proc3829899.chain_3101,blat.proc3829899.chain_3102,blat.proc3829899.chain_3104,blat.proc3829899.chain_3106	10	Trinity_GG_31552_c0_g1_i3,Trinity_GG_31552_c0_g1_i6,blat.proc3829899.chain_3103,blat.proc3829899.chain_3105,blat.proc3829899.chain_3107	5
scaffold_10	alternate_exon	16258044	16258262	+	asmbl_4985	none	STRG.13097.4	1	STRG.13097.1,STRG.13097.3	2
scaffold_2	spliced_intron	20441919	20442053	+	asmbl_25364	none	STRG.2884.1,blat.proc3829871.chain_3011	2	blat.proc3829871.chain_3010	1
scaffold_8	alt_acceptor	9122052	9122053	-	asmbl_53001	none	STRG.10160.1	1	STRG.10160.2,STRG.10160.3,blat.proc3829891.chain_2327,blat.proc3829891.chain_2328,blat.proc3829891.chain_2330	5
scaffold_18	starts_in_intron	8371278	8371278	-	asmbl_20038	none	blat.proc3829897.chain_2272	1	STRG.21500.1,STRG.21500.2,STRG.21500.3,blat.proc3829897.chain_2273	4
scaffold_6	retained_intron	5752485	5752688	+	asmbl_46915,asmbl_46918	none	STRG.7525.1,Trinity_GG_4120_c0_g1_i1,blat.proc3829873.chain_3645,blat.proc3829873.chain_3646	4	STRG.7525.2,blat.proc3829873.chain_3644,blat.proc3829873.chain_3647	3
scaffold_23	alternate_exon	4101046	4101265	-	asmbl_31551	none	blat.proc3829899.chain_2933	1	STRG.25802.2,STRG.25802.3,blat.proc3829899.chain_2934,blat.proc3829899.chain_2937	4
scaffold_5	alternate_exon	4628791	4629174	-	asmbl_45351	none	STRG.5909.3,Trinity_GG_20341_c1_g1_i1,blat.proc3829889.chain_1979	3	STRG.5909.2,blat.proc3829889.chain_1978	2
scaffold_4	starts_in_intron	19378587	19378587	+	asmbl_43485	none	Trinity_GG_2994_c1_g1_i2,blat.proc3829873.chain_1676	2	STRG.5522.1,blat.proc3829873.chain_1677,blat.proc3829873.chain_1678	3
scaffold_16	spliced_intron	744436	744656	-	asmbl_16066,asmbl_16070	none	STRG.19044.1,blat.proc3829897.chain_10,blat.proc3829897.chain_13	3	blat.proc3829897.chain_14,blat.proc3829897.chain_9	2
scaffold_13	retained_exon	7718019	7718107	-	asmbl_9864	none	STRG.16043.2,blat.proc3829895.chain_750	2	STRG.16043.1,blat.proc3829895.chain_748	2
scaffold_8	alternate_exon	23208	23294	-	asmbl_52676	none	STRG.9695.2	1	STRG.9695.1,blat.proc3829891.chain_1953,blat.proc3829891.chain_1954	3
scaffold_17	alt_donor	11038780	11038781	-	asmbl_19309	none	STRG.20653.3,blat.proc3829897.chain_1562	2	STRG.20653.6	1
scaffold_12	spliced_intron	12308782	12309134	+	asmbl_8951,asmbl_8954,asmbl_8955	none	STRG.15117.4,STRG.15117.6,blat.proc3829877.chain_3594	3	STRG.15117.3,STRG.15117.5,blat.proc3829877.chain_3595	3
scaffold_17	alt_acceptor	5726282	5726283	-	asmbl_18994	none	STRG.20261.1,blat.proc3829897.chain_1218	2	STRG.20261.3	1
scaffold_28	alt_donor	7189708	7189709	-	asmbl_37710	none	STRG.29757.2	1	STRG.29757.1,blat.proc3829901.chain_2896	2
scaffold_17	alternate_exon	9491166	9491564	+	asmbl_18225	none	STRG.20560.2,Trinity_GG_11271_c0_g1_i1,blat.proc3829881.chain_1382	3	STRG.20560.1,Trinity_GG_11271_c0_g1_i2,blat.proc3829881.chain_1381	3
scaffold_1	starts_in_intron	7269090	7269090	-	asmbl_427	none	blat.proc3829887.chain_425	1	blat.proc3829887.chain_426,blat.proc3829887.chain_427	2
scaffold_14	starts_in_intron	2942735	2942735	-	asmbl_12975,asmbl_12976	none	STRG.16884.2,STRG.16884.3,blat.proc3829895.chain_1610	3	STRG.16884.1,blat.proc3829895.chain_1611	2
scaffold_17	retained_intron	14633326	14633465	+	asmbl_18533	none	STRG.20934.2	1	blat.proc3829881.chain_1774	1
scaffold_21	alt_acceptor	1053775	1053776	-	asmbl_27402,asmbl_27405	none	STRG.23776.2,Trinity_GG_30261_c0_g1_i4,blat.proc3829899.chain_852	3	STRG.23776.1,Trinity_GG_30261_c0_g1_i11,blat.proc3829899.chain_850	3
scaffold_13	alt_acceptor	3522816	3522817	-	asmbl_9507,asmbl_9509	none	STRG.15654.1,STRG.15654.2,blat.proc3829895.chain_399	3	STRG.15654.3,blat.proc3829895.chain_400	2
scaffold_9	alt_donor	6281844	6281845	+	asmbl_54070	none	STRG.11155.2,Trinity_GG_6191_c0_g1_i1,blat.proc3829875.chain_3600	3	STRG.11155.1,Trinity_GG_6191_c0_g1_i2,blat.proc3829875.chain_3601	3
scaffold_17	retained_intron	10029016	10029173	+	asmbl_18280	none	Trinity_GG_11248_c0_g1_i4,blat.proc3829881.chain_1338	2	STRG.20606.1	1
scaffold_11	alt_donor	1158921	1158922	+	asmbl_5286,asmbl_5287	none	STRG.13299.1,Trinity_GG_7310_c0_g1_i1,blat.proc3829877.chain_1802,blat.proc3829877.chain_1804	4	blat.proc3829877.chain_1803	1
scaffold_1	spliced_intron	14354771	14354860	-	asmbl_905	none	blat.proc3829887.chain_906	1	Trinity_GG_17550_c0_g1_i3,blat.proc3829887.chain_907,blat.proc3829887.chain_908,blat.proc3829887.chain_909,blat.proc3829887.chain_910	5
scaffold_13	starts_in_intron	10228190	10228190	-	asmbl_10018	none	blat.proc3829895.chain_978	1	STRG.16243.1,STRG.16243.2,STRG.16243.3,STRG.16243.4,blat.proc3829895.chain_976,blat.proc3829895.chain_977	6
scaffold_23	alt_donor	4311119	4311120	+	asmbl_30798,asmbl_30799,asmbl_30800,asmbl_30801	none	STRG.25826.1,Trinity_GG_14254_c0_g1_i1,Trinity_GG_14254_c0_g1_i7,blat.proc3829883.chain_2712,blat.proc3829883.chain_2715,blat.proc3829883.chain_2716	6	blat.proc3829883.chain_2714	1
scaffold_8	alternate_exon	3615558	3615964	+	asmbl_51773,asmbl_51774,asmbl_51778	none	STRG.9854.1,STRG.9854.2,STRG.9854.3,blat.proc3829875.chain_2278,blat.proc3829875.chain_2279	5	STRG.9854.4	1
scaffold_2	starts_in_intron	7881050	7881050	+	asmbl_24619	none	Trinity_GG_1183_c0_g1_i20,blat.proc3829871.chain_2183	2	STRG.2088.1,Trinity_GG_1183_c0_g1_i10,Trinity_GG_1183_c0_g1_i16,Trinity_GG_1183_c0_g1_i4,blat.proc3829871.chain_2178,blat.proc3829871.chain_2182,blat.proc3829871.chain_2185	7
scaffold_16	starts_in_intron	4149665	4149665	+	asmbl_16970	none	Trinity_GG_10518_c0_g1_i3,blat.proc3829881.chain_43	2	STRG.19218.1,STRG.19218.2,STRG.19218.3,Trinity_GG_10518_c0_g1_i2,blat.proc3829881.chain_44	5
scaffold_1	alt_donor	12956121	12956122	+	asmbl_2268,asmbl_2269	none	STRG.926.1,STRG.926.3,blat.proc3829871.chain_1014,blat.proc3829871.chain_1015	4	STRG.926.2	1
scaffold_10	skipped_exon	17094808	17095396	-	asmbl_3934	none	blat.proc3829893.chain_1577	1	STRG.13145.1,blat.proc3829893.chain_1578,blat.proc3829893.chain_1579	3
scaffold_15	starts_in_intron	15501785	15501785	+	asmbl_14756,asmbl_14757	none	STRG.18940.2,blat.proc3829879.chain_3532	2	STRG.18940.1,Trinity_GG_10382_c0_g1_i1,Trinity_GG_10382_c0_g1_i2,Trinity_GG_10382_c0_g1_i3,Trinity_GG_10382_c0_g1_i5,Trinity_GG_10382_c0_g1_i6,blat.proc3829879.chain_3533,blat.proc3829879.chain_3534,blat.proc3829879.chain_3535,blat.proc3829879.chain_3536,blat.proc3829879.chain_3537	11
scaffold_23	alt_donor	3053574	3053575	-	asmbl_31505	none	STRG.25733.1,blat.proc3829899.chain_2805	2	STRG.25733.2,blat.proc3829899.chain_2804	2
scaffold_3	skipped_exon	14777542	14779842	-	asmbl_39375	none	blat.proc3829887.chain_3629	1	STRG.3820.1,STRG.3820.2,STRG.3820.3,STRG.3820.4,blat.proc3829887.chain_3626,blat.proc3829887.chain_3628,blat.proc3829887.chain_3630	7
scaffold_1	retained_intron	6320286	6320404	-	asmbl_365	none	blat.proc3829887.chain_322	1	STRG.431.1,blat.proc3829887.chain_321,blat.proc3829887.chain_323	3
scaffold_24	alt_donor	879811	879812	+	asmbl_32063	none	STRG.26351.3	1	STRG.26351.2	1
scaffold_14	skipped_exon	868522	868972	+	asmbl_11748,asmbl_11749,asmbl_11750,asmbl_11751	none	STRG.16747.1,STRG.16747.2,STRG.16747.3,blat.proc3829879.chain_1427	4	Trinity_GG_9198_c0_g1_i4,blat.proc3829879.chain_1428	2
scaffold_16	retained_intron	7910328	7910505	+	asmbl_17159	none	Trinity_GG_10619_c0_g1_i1,blat.proc3829881.chain_262	2	STRG.19432.1,Trinity_GG_10619_c0_g1_i2,blat.proc3829881.chain_260,blat.proc3829881.chain_261	4
scaffold_9	spliced_intron	9656350	9656875	+	asmbl_54205,asmbl_54207,asmbl_54209	none	STRG.11332.1,STRG.11332.2,blat.proc3829877.chain_100,blat.proc3829877.chain_98	4	blat.proc3829877.chain_99	1
scaffold_2	starts_in_intron	4570439	4570439	+	asmbl_24376	none	Trinity_GG_1050_c0_g1_i1,blat.proc3829871.chain_1931	2	STRG.1881.1,blat.proc3829871.chain_1930	2
scaffold_15	alt_donor	5345856	5345857	+	asmbl_14141	none	STRG.18224.1,blat.proc3829879.chain_2841,blat.proc3829879.chain_2842	3	STRG.18224.2,blat.proc3829879.chain_2843	2
scaffold_7	retained_intron	3955085	3955398	-	asmbl_49645	none	blat.proc3829891.chain_1087	1	blat.proc3829891.chain_1089,blat.proc3829891.chain_1090	2
scaffold_16	starts_in_intron	4657743	4657743	+	asmbl_16989	none	Trinity_GG_10530_c0_g1_i1,blat.proc3829881.chain_69	2	STRG.19239.1,STRG.19239.2,blat.proc3829881.chain_70,blat.proc3829881.chain_71,blat.proc3829881.chain_72	5
scaffold_5	alt_donor	14569230	14569231	-	asmbl_45978	none	STRG.6648.1,blat.proc3829889.chain_2698	2	STRG.6648.2	1
scaffold_3	alternate_exon	6032281	6050805	-	asmbl_38833,asmbl_38834,asmbl_38836	none	STRG.3255.1,STRG.3255.2,STRG.3255.5,blat.proc3829887.chain_2986	4	blat.proc3829887.chain_3058	1
scaffold_17	alt_donor	682829	682830	-	asmbl_18689	none	STRG.19908.2	1	STRG.19908.3,blat.proc3829897.chain_873	2
scaffold_1	alt_acceptor	3438193	3438194	+	asmbl_1593	none	STRG.208.2,Trinity_GG_154_c0_g1_i2,blat.proc3829871.chain_266	3	STRG.208.1,Trinity_GG_154_c0_g1_i1,blat.proc3829871.chain_267	3
scaffold_1	ends_in_intron	8753563	8753563	-	asmbl_497,asmbl_498	none	STRG.583.4,Trinity_GG_17342_c0_g1_i8,blat.proc3829887.chain_505,blat.proc3829887.chain_509	4	STRG.583.1,STRG.583.2,blat.proc3829887.chain_507,blat.proc3829887.chain_508	4
scaffold_20	retained_exon	1619050	1619133	-	asmbl_26520,asmbl_26521	none	STRG.22881.2,STRG.22881.4	2	STRG.22881.3	1
scaffold_9	starts_in_intron	15590490	15590490	+	asmbl_54555	none	blat.proc3829877.chain_495	1	STRG.11739.1,blat.proc3829877.chain_496,blat.proc3829877.chain_497,blat.proc3829877.chain_498,blat.proc3829877.chain_499,blat.proc3829877.chain_500,blat.proc3829877.chain_501	7
scaffold_13	starts_in_intron	366456	366456	-	asmbl_9282	none	Trinity_GG_25666_c0_g1_i3,blat.proc3829895.chain_165	2	STRG.15426.5	1
scaffold_25	spliced_intron	6068856	6068946	-	asmbl_34287,asmbl_34291,asmbl_34293,asmbl_34294,asmbl_34295	none	STRG.27475.1,blat.proc3829901.chain_716,blat.proc3829901.chain_717,blat.proc3829901.chain_719,blat.proc3829901.chain_721,blat.proc3829901.chain_722	6	blat.proc3829901.chain_718	1
scaffold_12	alternate_exon	4983875	4986636	+	asmbl_8590	none	blat.proc3829877.chain_3086	1	blat.proc3829877.chain_3084	1
scaffold_24	alt_acceptor	9121612	9121613	+	asmbl_32519	none	STRG.26917.2	1	STRG.26917.1,Trinity_GG_14864_c0_g1_i4,blat.proc3829885.chain_20	3
scaffold_7	alt_acceptor	13806985	13806986	+	asmbl_51258,asmbl_51259,asmbl_51261	none	STRG.9479.1,STRG.9479.2,STRG.9479.4	3	STRG.9479.3	1
scaffold_11	alt_donor	2090204	2090205	+	asmbl_5318	none	STRG.13357.3,blat.proc3829877.chain_1858	2	STRG.13357.1,STRG.13357.2,blat.proc3829877.chain_1859,blat.proc3829877.chain_1860	4
scaffold_11	retained_intron	14532679	14533569	+	asmbl_6068,asmbl_6069,asmbl_6070,asmbl_6072	none	STRG.14239.2,STRG.14239.4,Trinity_GG_7860_c0_g1_i7,blat.proc3829877.chain_2744,blat.proc3829877.chain_2746,blat.proc3829877.chain_2748	6	STRG.14239.3,Trinity_GG_7860_c0_g1_i6,blat.proc3829877.chain_2745	3
scaffold_18	retained_intron	8399580	8400469	+	asmbl_20860,asmbl_20862	none	STRG.21503.3,blat.proc3829881.chain_2516	2	STRG.21503.1,STRG.21503.2,blat.proc3829881.chain_2515	3
scaffold_14	alt_acceptor	582706	582707	+	asmbl_11745	none	STRG.16728.3	1	STRG.16728.1,STRG.16728.2,Trinity_GG_9217_c0_g1_i3,Trinity_GG_9217_c0_g1_i7,blat.proc3829879.chain_1457,blat.proc3829879.chain_1458	6
scaffold_9	starts_in_intron	9614533	9614533	-	asmbl_55182	none	STRG.11319.1,blat.proc3829891.chain_3437	2	STRG.11319.3,blat.proc3829891.chain_3436	2
scaffold_24	alternate_exon	10130802	10132036	+	asmbl_32545	none	STRG.26962.1	1	STRG.26962.4	1
scaffold_22	alternate_exon	10321920	10322019	+	asmbl_29643	none	STRG.25367.2	1	STRG.25367.3	1
scaffold_15	alt_acceptor	15435821	15435822	-	asmbl_15801	none	blat.proc3829895.chain_3630	1	STRG.18920.2,blat.proc3829895.chain_3633,blat.proc3829895.chain_3635	3
scaffold_1	starts_in_intron	11121900	11121900	+	asmbl_2057	none	Trinity_GG_457_c0_g1_i3,blat.proc3829871.chain_790	2	STRG.730.1,STRG.730.2,blat.proc3829871.chain_787,blat.proc3829871.chain_789	4
scaffold_13	spliced_intron	5949932	5950148	-	asmbl_9716,asmbl_9718,asmbl_9719,asmbl_9720	none	STRG.15896.1,STRG.15896.2,STRG.15896.3,STRG.15896.4,blat.proc3829895.chain_637	5	STRG.15896.5,blat.proc3829895.chain_638	2
scaffold_21	alt_donor	8278422	8278423	+	asmbl_28819,asmbl_28820,asmbl_28821,asmbl_28822	none	STRG.24353.1,STRG.24353.2,STRG.24353.3,STRG.24353.4	4	blat.proc3829883.chain_1472	1
scaffold_8	alt_donor	5554106	5554107	-	asmbl_52828	none	blat.proc3829891.chain_2060	1	blat.proc3829891.chain_2058	1
scaffold_340	alt_acceptor	1148	1149	+	asmbl_40965,asmbl_40966	none	STRG.30267.3,STRG.30267.4	2	STRG.30267.1	1
scaffold_15	retained_exon	14324366	14324440	-	asmbl_15728	none	blat.proc3829895.chain_3603	1	STRG.18855.3	1
scaffold_18	alt_donor	3093330	3093331	+	asmbl_20464	none	STRG.21136.1,Trinity_GG_11616_c0_g1_i2,blat.proc3829881.chain_1984	3	Trinity_GG_11616_c0_g1_i1,blat.proc3829881.chain_1985	2
scaffold_7	alt_donor	12216827	12216828	-	asmbl_50001	none	STRG.9307.1,blat.proc3829891.chain_1555	2	blat.proc3829891.chain_1554	1
scaffold_6	alt_acceptor	11484924	11484925	+	asmbl_47270,asmbl_47271	none	STRG.7936.3,blat.proc3829875.chain_302	2	STRG.7936.1,STRG.7936.2,STRG.7936.4,blat.proc3829875.chain_299,blat.proc3829875.chain_300,blat.proc3829875.chain_301,blat.proc3829875.chain_304	7
scaffold_28	alternate_exon	2267847	2271088	-	asmbl_37349,asmbl_37351	none	STRG.29380.1,blat.proc3829901.chain_2468,blat.proc3829901.chain_2469	3	blat.proc3829901.chain_2471	1
scaffold_27	alt_donor	4944507	4944508	+	asmbl_36287	none	STRG.28914.5	1	STRG.28914.1,STRG.28914.2,STRG.28914.3,STRG.28914.4,STRG.28914.6,STRG.28914.7,blat.proc3829885.chain_2067,blat.proc3829885.chain_2069	8
scaffold_3	alternate_exon	947697	947701	-	asmbl_38644	none	blat.proc3829887.chain_2706	1	STRG.2916.1	1
scaffold_1	alternate_exon	12167434	12168088	+	asmbl_2168	none	STRG.845.1	1	STRG.845.2,blat.proc3829871.chain_919,blat.proc3829871.chain_920	3
scaffold_4	alt_donor	15027392	15027393	-	asmbl_41836	none	STRG.5113.2	1	STRG.5113.1,blat.proc3829889.chain_1116	2
scaffold_12	ends_in_intron	15263304	15263304	-	asmbl_8200	none	Trinity_GG_25603_c0_g1_i2,blat.proc3829895.chain_57	2	STRG.15320.1,STRG.15320.2,STRG.15320.3,STRG.15320.4,Trinity_GG_25603_c0_g1_i1,Trinity_GG_25603_c0_g1_i3,blat.proc3829895.chain_52,blat.proc3829895.chain_53,blat.proc3829895.chain_54	9
scaffold_21	retained_intron	1633782	1633907	+	asmbl_28364	none	STRG.23803.1,blat.proc3829883.chain_985	2	STRG.23803.2,blat.proc3829883.chain_983	2
scaffold_24	alt_acceptor	1423234	1423235	-	asmbl_32719	none	STRG.26376.1,Trinity_GG_31729_c0_g1_i1,blat.proc3829899.chain_3406	3	STRG.26376.2,Trinity_GG_31729_c0_g1_i2,blat.proc3829899.chain_3407	3
scaffold_11	alt_acceptor	8078026	8078027	-	asmbl_6800,asmbl_6802,asmbl_6804,asmbl_6806,asmbl_6812,asmbl_6815	none	STRG.13802.3,Trinity_GG_24711_c0_g1_i17,Trinity_GG_24711_c0_g1_i18,Trinity_GG_24711_c0_g1_i3,Trinity_GG_24711_c0_g1_i8,blat.proc3829893.chain_2197,blat.proc3829893.chain_2204,blat.proc3829893.chain_2205,blat.proc3829893.chain_2206,blat.proc3829893.chain_2209,blat.proc3829893.chain_2211	11	STRG.13802.2,STRG.13802.4,STRG.13802.5,Trinity_GG_24711_c0_g1_i2,Trinity_GG_24711_c0_g1_i5,blat.proc3829893.chain_2198,blat.proc3829893.chain_2200,blat.proc3829893.chain_2201	8
scaffold_2	starts_in_intron	14746017	14746017	+	asmbl_25003,asmbl_25004	none	Trinity_GG_1405_c0_g1_i2,Trinity_GG_1405_c0_g1_i6,blat.proc3829871.chain_2649,blat.proc3829871.chain_2651	4	STRG.2472.1,STRG.2472.2,blat.proc3829871.chain_2653	3
scaffold_11	spliced_intron	9830658	9831678	+	asmbl_5867,asmbl_5871,asmbl_5875	none	STRG.13996.3,STRG.13996.4,blat.proc3829877.chain_2514	3	STRG.13996.1,Trinity_GG_7729_c0_g1_i9,Trinity_GG_7729_c1_g1_i1,blat.proc3829877.chain_2513,blat.proc3829877.chain_2515	5
scaffold_2	alt_acceptor	894264	894265	+	asmbl_24156,asmbl_24158,asmbl_24160	none	STRG.1565.2,STRG.1565.3,STRG.1565.4,blat.proc3829871.chain_1635,blat.proc3829871.chain_1636	5	STRG.1565.1,Trinity_GG_899_c0_g2_i7,blat.proc3829871.chain_1631,blat.proc3829871.chain_1632,blat.proc3829871.chain_1634	5
scaffold_15	spliced_intron	11402043	11402524	-	asmbl_15512	none	STRG.18596.3,blat.proc3829895.chain_3375	2	STRG.18596.2,blat.proc3829895.chain_3373	2
scaffold_7	alternate_exon	11232031	11232119	+	asmbl_51041	none	STRG.9258.2,blat.proc3829875.chain_1696	2	STRG.9258.1	1
scaffold_23	skipped_exon	2199414	2200397	-	asmbl_31428	none	STRG.25670.2	1	STRG.25670.1	1
scaffold_24	alt_acceptor	8958009	8958010	+	asmbl_32469	none	STRG.26898.2,Trinity_GG_14870_c0_g1_i2,blat.proc3829885.chain_35	3	STRG.26898.1	1
scaffold_18	retained_intron	11950782	11950808	+	asmbl_20980	none	Trinity_GG_11964_c0_g1_i2,Trinity_GG_11964_c0_g1_i4	2	STRG.21701.2	1
scaffold_1	alt_acceptor	19045575	19045576	+	asmbl_2566	none	STRG.1337.2	1	STRG.1337.4	1
scaffold_13	alternate_exon	405973	407071	-	asmbl_9309,asmbl_9310,asmbl_9315,asmbl_9318	none	STRG.15428.3,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_220,blat.proc3829895.chain_224,blat.proc3829895.chain_233	6	STRG.15428.2,Trinity_GG_25691_c0_g1_i25,Trinity_GG_25691_c0_g1_i8,blat.proc3829895.chain_223,blat.proc3829895.chain_226	5
scaffold_4	retained_intron	5648812	5648909	-	asmbl_41353,asmbl_41355,asmbl_41371	none	STRG.4469.1,Trinity_GG_19533_c1_g1_i2,blat.proc3829889.chain_615,blat.proc3829889.chain_617,blat.proc3829889.chain_618	5	STRG.4469.4	1
scaffold_12	alt_donor	10539621	10539622	+	asmbl_8896	none	STRG.15008.1,Trinity_GG_8265_c0_g1_i2,blat.proc3829877.chain_3465	3	STRG.15008.2,Trinity_GG_8265_c0_g1_i1,blat.proc3829877.chain_3464	3
scaffold_23	retained_intron	4449748	4450584	-	asmbl_31586,asmbl_31590	none	STRG.25842.4,Trinity_GG_31473_c0_g1_i2,Trinity_GG_31473_c0_g1_i5,Trinity_GG_31473_c0_g1_i6,blat.proc3829899.chain_2967,blat.proc3829899.chain_2968,blat.proc3829899.chain_2969	7	STRG.25842.2	1
scaffold_23	retained_intron	7984376	7984498	+	asmbl_31044	none	blat.proc3829883.chain_2987	1	STRG.26088.1,STRG.26088.2,blat.proc3829883.chain_2988	3
scaffold_24	starts_in_intron	5301636	5301636	-	asmbl_32876	none	blat.proc3829899.chain_3674	1	STRG.26601.1,blat.proc3829899.chain_3673	2
scaffold_9	retained_intron	8395093	8395319	+	asmbl_54155,asmbl_54156,asmbl_54160	none	STRG.11249.2,STRG.11249.4,blat.proc3829877.chain_18,blat.proc3829877.chain_19,blat.proc3829877.chain_21	5	STRG.11249.1,STRG.11249.3,blat.proc3829877.chain_17	3
scaffold_15	alt_acceptor	1988704	1988705	+	asmbl_13987	none	STRG.17976.2,blat.proc3829879.chain_2654	2	STRG.17976.1,blat.proc3829879.chain_2655	2
scaffold_6	ends_in_intron	13000695	13000695	-	asmbl_48806	none	Trinity_GG_21547_c0_g1_i15,blat.proc3829891.chain_274	2	STRG.8061.1,STRG.8061.2,STRG.8061.3,STRG.8061.4,STRG.8061.5,STRG.8061.6,STRG.8061.7,STRG.8061.8,Trinity_GG_21547_c0_g1_i10,Trinity_GG_21547_c0_g1_i11,Trinity_GG_21547_c0_g1_i16,Trinity_GG_21547_c0_g1_i18,Trinity_GG_21547_c0_g1_i2,Trinity_GG_21547_c0_g1_i7,blat.proc3829891.chain_259,blat.proc3829891.chain_260,blat.proc3829891.chain_262,blat.proc3829891.chain_263,blat.proc3829891.chain_264,blat.proc3829891.chain_265,blat.proc3829891.chain_267,blat.proc3829891.chain_268,blat.proc3829891.chain_269,blat.proc3829891.chain_270,blat.proc3829891.chain_271,blat.proc3829891.chain_272,blat.proc3829891.chain_273,blat.proc3829891.chain_275	28
scaffold_10	retained_intron	5862111	5862269	-	asmbl_3313,asmbl_3317	none	STRG.12401.2,Trinity_GG_23943_c1_g1_i1,blat.proc3829893.chain_875	3	STRG.12401.3,Trinity_GG_23943_c1_g1_i3,blat.proc3829893.chain_874	3
scaffold_2	starts_in_intron	4326838	4326838	-	asmbl_23092	none	STRG.1863.2,blat.proc3829887.chain_1722	2	STRG.1863.1,blat.proc3829887.chain_1723	2
scaffold_1	spliced_intron	8789817	8789913	+	asmbl_1934	none	STRG.576.1,blat.proc3829871.chain_648	2	blat.proc3829871.chain_650	1
scaffold_6	starts_in_intron	12523670	12523670	-	asmbl_48751,asmbl_48752,asmbl_48753	none	STRG.8002.2,STRG.8002.3,STRG.8002.4	3	STRG.8002.1,blat.proc3829891.chain_300,blat.proc3829891.chain_301,blat.proc3829891.chain_302	4
scaffold_24	alt_donor	7637607	7637608	-	asmbl_33030	none	STRG.26784.1,blat.proc3829901.chain_90	2	STRG.26784.2	1
scaffold_26	spliced_intron	6660908	6661271	+	asmbl_35623,asmbl_35625,asmbl_35626	none	STRG.28361.1,blat.proc3829885.chain_1288,blat.proc3829885.chain_1289,blat.proc3829885.chain_1290	4	blat.proc3829885.chain_1287	1
scaffold_7	alt_acceptor	1513418	1513419	+	asmbl_50490	none	STRG.8635.1,Trinity_GG_4714_c0_g1_i1,blat.proc3829875.chain_989	3	STRG.8635.2	1
scaffold_7	starts_in_intron	12540916	12540916	-	asmbl_50056	none	STRG.9352.2,blat.proc3829891.chain_1572	2	STRG.9352.1,STRG.9352.3,STRG.9352.4,STRG.9352.5,blat.proc3829891.chain_1570,blat.proc3829891.chain_1571	6
scaffold_9	retained_exon	9722941	9723030	+	asmbl_54225	none	STRG.11338.1,blat.proc3829877.chain_104	2	blat.proc3829877.chain_103	1
scaffold_20	retained_exon	1469861	1469910	-	asmbl_26504	none	STRG.22854.3,blat.proc3829897.chain_3659	2	STRG.22854.1,blat.proc3829897.chain_3657	2
scaffold_4	retained_exon	19372029	19372090	+	asmbl_43481,asmbl_43483	none	STRG.5522.1,blat.proc3829873.chain_1678	2	blat.proc3829873.chain_1677	1
scaffold_20	starts_in_intron	1589200	1589200	+	asmbl_25591	none	blat.proc3829881.chain_3706	1	STRG.22875.1,blat.proc3829881.chain_3705	2
scaffold_6	alt_acceptor	15112565	15112566	+	asmbl_47594,asmbl_47595	none	STRG.8269.1,STRG.8269.3,blat.proc3829875.chain_672	3	STRG.8269.2	1
scaffold_10	spliced_intron	5823736	5824133	+	asmbl_4486	none	STRG.12397.3,Trinity_GG_6884_c0_g1_i2,blat.proc3829877.chain_1048	3	STRG.12397.1,blat.proc3829877.chain_1049	2
scaffold_3	starts_in_intron	1758763	1758763	+	asmbl_39830	none	STRG.2991.3	1	STRG.2991.1,STRG.2991.2,blat.proc3829871.chain_3179,blat.proc3829871.chain_3180,blat.proc3829871.chain_3181,blat.proc3829871.chain_3184,blat.proc3829871.chain_3185	7
scaffold_4	skipped_exon	18529883	18530351	-	asmbl_42129	none	STRG.5455.1	1	STRG.5455.2	1
scaffold_22	starts_in_intron	484277	484277	+	asmbl_29151	none	blat.proc3829883.chain_1727	1	STRG.24679.2	1
scaffold_4	alt_donor	16577564	16577565	+	asmbl_43315	none	STRG.5238.2	1	STRG.5238.3	1
scaffold_10	alternate_exon	770326	770429	+	asmbl_4154	none	STRG.11962.2	1	STRG.11962.4	1
scaffold_12	alternate_exon	15440042	15440094	-	asmbl_8226	none	Trinity_GG_25614_c0_g1_i2,blat.proc3829895.chain_74	2	STRG.15336.1,STRG.15336.2,blat.proc3829895.chain_75,blat.proc3829895.chain_77	4
scaffold_18	retained_intron	9170256	9170424	+	asmbl_20905	none	Trinity_GG_11916_c0_g1_i1,blat.proc3829881.chain_2538	2	STRG.21549.1,Trinity_GG_11916_c0_g1_i3,blat.proc3829881.chain_2539	3
scaffold_9	alt_acceptor	6745769	6745770	-	asmbl_55036	none	STRG.11176.2	1	STRG.11176.1,STRG.11176.3,blat.proc3829891.chain_3303,blat.proc3829891.chain_3304,blat.proc3829891.chain_3306	5
scaffold_4	alt_acceptor	10451854	10451855	-	asmbl_41588,asmbl_41594,asmbl_41597	none	STRG.4795.1,blat.proc3829889.chain_833,blat.proc3829889.chain_835,blat.proc3829889.chain_839	4	STRG.4795.2,STRG.4795.3,blat.proc3829889.chain_838	3
scaffold_1	retained_exon	14364086	14364252	-	asmbl_909	none	STRG.1033.2,blat.proc3829887.chain_884	2	STRG.1033.3	1
scaffold_24	retained_exon	9592748	9593059	-	asmbl_33128	none	STRG.26924.1,blat.proc3829901.chain_225	2	STRG.26924.2	1
scaffold_5	alt_donor	15893594	15893595	+	asmbl_44690	none	STRG.6770.3	1	STRG.6770.1,STRG.6770.2,blat.proc3829873.chain_2800,blat.proc3829873.chain_2801	4
scaffold_8	starts_in_intron	4238370	4238370	-	asmbl_52761	none	blat.proc3829891.chain_1991	1	STRG.9900.1,STRG.9900.2,blat.proc3829891.chain_1987,blat.proc3829891.chain_1988,blat.proc3829891.chain_1990	5
scaffold_1	alt_donor	13100301	13100302	-	asmbl_799	none	STRG.941.1,blat.proc3829887.chain_825	2	STRG.941.2,blat.proc3829887.chain_823	2
scaffold_7	spliced_intron	9810110	9810191	-	asmbl_49886	none	STRG.9163.2	1	STRG.9163.1	1
scaffold_4	alternate_exon	16576270	16576434	+	asmbl_43311,asmbl_43314	none	STRG.5238.1,blat.proc3829873.chain_1499,blat.proc3829873.chain_1500	3	STRG.5238.2,STRG.5238.3	2
scaffold_11	retained_intron	11930763	11931002	-	asmbl_7020,asmbl_7031	none	STRG.14160.1,blat.proc3829893.chain_2562	2	STRG.14160.3,STRG.14160.4,STRG.14160.5	3
scaffold_21	ends_in_intron	395223	395223	-	asmbl_27336	none	Trinity_GG_30225_c0_g1_i4,blat.proc3829899.chain_756	2	STRG.23724.1,STRG.23724.2,Trinity_GG_30225_c0_g1_i2,Trinity_GG_30225_c0_g1_i3,Trinity_GG_30225_c0_g1_i7,blat.proc3829899.chain_754,blat.proc3829899.chain_755,blat.proc3829899.chain_758	8
scaffold_1	retained_intron	4864390	4864489	-	asmbl_222	none	STRG.287.1,blat.proc3829887.chain_168	2	STRG.287.2,blat.proc3829887.chain_169	2
scaffold_12	starts_in_intron	4401514	4401514	-	asmbl_7528	none	STRG.14607.1,blat.proc3829893.chain_2871	2	STRG.14607.2	1
scaffold_25	retained_intron	7878592	7878745	+	asmbl_33680	none	STRG.27596.1	1	STRG.27596.2	1
scaffold_15	retained_intron	6080628	6080840	-	asmbl_15254	none	blat.proc3829895.chain_3028	1	STRG.18259.1,blat.proc3829895.chain_3029	2
scaffold_6	ends_in_intron	17831275	17831275	+	asmbl_47725	none	blat.proc3829885.chain_3184	1	STRG.8463.1,STRG.8463.2,blat.proc3829875.chain_856	3
scaffold_2	alt_acceptor	7469205	7469206	-	asmbl_23283,asmbl_23286	none	STRG.2075.3,STRG.2075.4,Trinity_GG_18127_c0_g1_i18,blat.proc3829887.chain_1893	4	Trinity_GG_18127_c0_g1_i23,blat.proc3829887.chain_1889	2
scaffold_18	alt_donor	7944082	7944083	-	asmbl_20024	none	STRG.21483.3,blat.proc3829897.chain_2326	2	STRG.21483.2	1
scaffold_19	spliced_intron	11483212	11483614	-	asmbl_21614,asmbl_21619	none	STRG.22477.3,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184	3	STRG.22477.1,blat.proc3829897.chain_3181	2
scaffold_26	alternate_exon	3672349	3672378	+	asmbl_35341	none	Trinity_GG_15479_c1_g1_i2,blat.proc3829885.chain_1031	2	blat.proc3829885.chain_1029	1
scaffold_11	alternate_exon	15084932	15085050	-	asmbl_7159	none	STRG.14265.2	1	STRG.14265.1,blat.proc3829893.chain_2698	2
scaffold_3	starts_in_intron	16006129	16006129	-	asmbl_39418	none	Trinity_GG_19148_c0_g1_i1,blat.proc3829887.chain_3672	2	STRG.3874.1,blat.proc3829887.chain_3673	2
scaffold_11	starts_in_intron	11340285	11340285	+	asmbl_5937,asmbl_5938	none	STRG.14070.2,Trinity_GG_7772_c0_g1_i1,blat.proc3829877.chain_2585	3	STRG.14070.1,blat.proc3829877.chain_2584	2
scaffold_20	retained_intron	12076152	12076237	-	asmbl_27141,asmbl_27142	none	Trinity_GG_30196_c0_g1_i7,blat.proc3829899.chain_689,blat.proc3829899.chain_690	3	STRG.23691.1,blat.proc3829899.chain_688,blat.proc3829899.chain_692	3
scaffold_2	alt_donor	14194590	14194591	-	asmbl_23581,asmbl_23582,asmbl_23584,asmbl_23586	none	STRG.2417.2,blat.proc3829887.chain_2207,blat.proc3829887.chain_2209,blat.proc3829887.chain_2212	4	blat.proc3829887.chain_2208,blat.proc3829887.chain_2210	2
scaffold_17	alt_donor	9485542	9485543	+	asmbl_18218,asmbl_18223	none	STRG.20558.2,blat.proc3829881.chain_1329,blat.proc3829881.chain_1331	3	STRG.20558.1,STRG.20558.3,blat.proc3829881.chain_1326,blat.proc3829881.chain_1327,blat.proc3829881.chain_1330	5
scaffold_6	ends_in_intron	2934543	2934543	-	asmbl_48148	none	STRG.7293.2	1	STRG.7293.1,blat.proc3829889.chain_3256	2
scaffold_23	alt_donor	4158623	4158624	+	asmbl_30788	none	STRG.25814.2,Trinity_GG_14238_c0_g1_i1,blat.proc3829883.chain_2686	3	STRG.25814.3	1
scaffold_13	alt_donor	8953601	8953602	-	asmbl_9960	none	STRG.16152.1,blat.proc3829895.chain_931	2	blat.proc3829895.chain_933	1
scaffold_10	alt_acceptor	381395	381396	-	asmbl_2864,asmbl_2865,asmbl_2867,asmbl_2868,asmbl_2869	none	STRG.11913.1,STRG.11913.2,STRG.11913.4,Trinity_GG_23607_c0_g1_i1,Trinity_GG_23607_c0_g1_i4,Trinity_GG_23607_c0_g1_i5,blat.proc3829893.chain_302,blat.proc3829893.chain_304,blat.proc3829893.chain_305,blat.proc3829893.chain_306	10	STRG.11913.3,Trinity_GG_23607_c0_g1_i3,blat.proc3829893.chain_303	3
scaffold_1	ends_in_intron	5232194	5232194	-	asmbl_257	none	Trinity_GG_17185_c1_g1_i5,blat.proc3829887.chain_195	2	STRG.332.1	1
scaffold_19	alternate_exon	4863379	4863422	+	asmbl_22146	none	STRG.22053.1	1	STRG.22053.3,blat.proc3829881.chain_2973	2
scaffold_23	alt_acceptor	2325248	2325249	+	asmbl_30694	none	STRG.25684.1,Trinity_GG_14178_c0_g1_i3	2	STRG.25684.2	1
scaffold_6	skipped_exon	4997185	4999978	+	asmbl_46847	none	STRG.7467.1,blat.proc3829873.chain_3547	2	blat.proc3829873.chain_3548	1
scaffold_18	alt_donor	7631668	7631669	-	asmbl_19994,asmbl_19995,asmbl_20001	none	STRG.21453.2,Trinity_GG_29021_c0_g1_i8,blat.proc3829897.chain_2310,blat.proc3829897.chain_2311,blat.proc3829897.chain_2312,blat.proc3829897.chain_2314	6	STRG.21453.3,STRG.21453.4,Trinity_GG_29021_c0_g1_i10,blat.proc3829897.chain_2313	4
scaffold_2	retained_exon	7881107	7881454	+	asmbl_24617,asmbl_24623	none	STRG.2088.1,Trinity_GG_1183_c0_g1_i10,Trinity_GG_1183_c0_g1_i4,blat.proc3829871.chain_2178,blat.proc3829871.chain_2185	5	Trinity_GG_1183_c0_g1_i2,blat.proc3829871.chain_2181	2
scaffold_3	alternate_exon	13177542	13180324	+	asmbl_40387,asmbl_40390,asmbl_40391,asmbl_40395	none	STRG.3679.1,blat.proc3829873.chain_76,blat.proc3829873.chain_77,blat.proc3829873.chain_78,blat.proc3829873.chain_80	5	STRG.3679.2,STRG.3679.3	2
scaffold_8	ends_in_intron	4847360	4847360	-	asmbl_52802	none	Trinity_GG_22535_c0_g1_i3,blat.proc3829891.chain_2054	2	STRG.9941.1,STRG.9941.2,blat.proc3829891.chain_2051,blat.proc3829891.chain_2052,blat.proc3829891.chain_2053,blat.proc3829891.chain_2056	6
scaffold_10	starts_in_intron	9061187	9061187	-	asmbl_3576	none	blat.proc3829893.chain_1166	1	STRG.12643.1,STRG.12643.2,blat.proc3829893.chain_1162,blat.proc3829893.chain_1164,blat.proc3829893.chain_1168,blat.proc3829893.chain_1169	6
scaffold_5	alt_acceptor	5058007	5058008	+	asmbl_43999,asmbl_44000,asmbl_44001	none	STRG.5949.1,STRG.5949.3,Trinity_GG_3276_c0_g2_i4,blat.proc3829873.chain_2142,blat.proc3829873.chain_2144,blat.proc3829873.chain_2145	6	STRG.5949.2	1
scaffold_14	alt_acceptor	2271037	2271038	-	asmbl_12910	none	STRG.16826.1,Trinity_GG_26431_c0_g1_i1,blat.proc3829895.chain_1515	3	STRG.16826.2,Trinity_GG_26431_c0_g1_i2,blat.proc3829895.chain_1516	3
scaffold_3	starts_in_intron	18302233	18302233	-	asmbl_39552	none	blat.proc3829889.chain_113	1	STRG.4034.1,blat.proc3829889.chain_112,blat.proc3829889.chain_114	3
scaffold_19	skipped_exon	5372937	5373632	+	asmbl_22172	none	STRG.22088.2	1	STRG.22088.1,blat.proc3829881.chain_3031	2
scaffold_15	spliced_intron	389143	389240	+	asmbl_13913	none	STRG.17879.2,blat.proc3829879.chain_2574	2	STRG.17879.1,STRG.17879.3,Trinity_GG_9836_c0_g1_i2,blat.proc3829879.chain_2569,blat.proc3829879.chain_2571,blat.proc3829879.chain_2572,blat.proc3829879.chain_2575	7
scaffold_2	skipped_exon	12352011	12354155	+	asmbl_24822	none	STRG.2292.1	1	STRG.2292.2,blat.proc3829871.chain_2393	2
scaffold_7	alt_acceptor	18392948	18392949	-	asmbl_50290,asmbl_50292,asmbl_50298,asmbl_50299	none	STRG.9659.2,STRG.9659.4,STRG.9659.5,Trinity_GG_22427_c0_g1_i15,blat.proc3829891.chain_1871,blat.proc3829891.chain_1874	6	STRG.9659.1,STRG.9659.3,Trinity_GG_22427_c0_g1_i10,Trinity_GG_22427_c0_g1_i11,Trinity_GG_22427_c0_g1_i5,blat.proc3829891.chain_1867,blat.proc3829891.chain_1868,blat.proc3829891.chain_1869,blat.proc3829891.chain_1870,blat.proc3829891.chain_1873,blat.proc3829891.chain_1875	11
scaffold_6	spliced_intron	12937728	12937921	+	asmbl_47392	none	STRG.8046.1,Trinity_GG_4418_c0_g1_i1,blat.proc3829875.chain_456	3	STRG.8046.2,blat.proc3829875.chain_457	2
scaffold_4	spliced_intron	5648305	5648753	-	asmbl_41352,asmbl_41354,asmbl_41355,asmbl_41369,asmbl_41370	none	STRG.4469.1,STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_614,blat.proc3829889.chain_617,blat.proc3829889.chain_619	7	Trinity_GG_19533_c1_g1_i2,blat.proc3829889.chain_615,blat.proc3829889.chain_618	3
scaffold_8	starts_in_intron	12737090	12737090	-	asmbl_53230	none	blat.proc3829891.chain_2535	1	STRG.10445.1,blat.proc3829891.chain_2536	2
scaffold_369	spliced_intron	1752	1811	+	asmbl_41006	none	STRG.30276.2	1	STRG.30276.1	1
scaffold_15	alternate_exon	1506381	1506653	+	asmbl_13955	none	STRG.17946.1	1	STRG.17946.2,Trinity_GG_9880_c0_g1_i4,blat.proc3829879.chain_2634	3
scaffold_3	retained_exon	10628901	10629296	+	asmbl_40237	none	blat.proc3829871.chain_3606	1	STRG.3509.1,blat.proc3829871.chain_3607,blat.proc3829871.chain_3608	3
scaffold_3	alternate_exon	7593333	7593501	+	asmbl_40128	none	Trinity_GG_1911_c0_g1_i2,blat.proc3829871.chain_3545	2	STRG.3345.1,Trinity_GG_1911_c0_g1_i1,blat.proc3829871.chain_3546,blat.proc3829871.chain_3547,blat.proc3829871.chain_3548	5
scaffold_25	retained_intron	4810874	4810995	+	asmbl_33531	none	Trinity_GG_15078_c0_g1_i7,blat.proc3829885.chain_378	2	STRG.27400.1,STRG.27400.2,Trinity_GG_15078_c0_g1_i1,Trinity_GG_15078_c0_g1_i5,Trinity_GG_15078_c0_g1_i6,blat.proc3829885.chain_374,blat.proc3829885.chain_375,blat.proc3829885.chain_376,blat.proc3829885.chain_377	9
scaffold_4	alternate_exon	17116847	17116928	+	asmbl_43376	none	Trinity_GG_2943_c0_g1_i1,blat.proc3829873.chain_1585	2	STRG.5308.4	1
scaffold_2	alt_acceptor	690805	690806	+	asmbl_24115	none	STRG.1553.2	1	STRG.1553.4	1
scaffold_1	spliced_intron	6973087	6973289	+	asmbl_1861,asmbl_1862,asmbl_1863	none	STRG.488.1,blat.proc3829871.chain_550,blat.proc3829871.chain_551,blat.proc3829871.chain_553	4	blat.proc3829871.chain_552	1
scaffold_9	alternate_exon	6905104	6905233	-	asmbl_55059	none	STRG.11190.1,Trinity_GG_23218_c0_g1_i1,blat.proc3829891.chain_3336	3	STRG.11190.2,blat.proc3829891.chain_3337	2
scaffold_6	ends_in_intron	13272843	13272843	+	asmbl_47451,asmbl_47454	none	STRG.8085.1,blat.proc3829875.chain_493,blat.proc3829875.chain_494	3	STRG.8085.2	1
scaffold_1	retained_intron	11395793	11396048	+	asmbl_2086	none	blat.proc3829871.chain_764	1	STRG.746.1,STRG.746.2,blat.proc3829871.chain_766	3
scaffold_10	starts_in_intron	13546868	13546868	-	asmbl_3809	none	blat.proc3829893.chain_1385	1	STRG.12942.1,blat.proc3829893.chain_1386	2
scaffold_23	alt_donor	2164789	2164790	-	asmbl_31423	none	STRG.25669.3	1	STRG.25669.6	1
scaffold_8	alt_donor	9884673	9884674	+	asmbl_52118	none	STRG.10229.1,Trinity_GG_5690_c0_g1_i3,blat.proc3829875.chain_2742,blat.proc3829875.chain_2743	4	STRG.10229.2,Trinity_GG_5690_c0_g1_i4,blat.proc3829875.chain_2741	3
scaffold_28	spliced_intron	7421600	7421706	-	asmbl_37728	none	STRG.29795.1,blat.proc3829901.chain_2842	2	blat.proc3829901.chain_2841	1
scaffold_2	alt_acceptor	2292046	2292047	-	asmbl_22907	none	STRG.1671.2	1	STRG.1671.1	1
scaffold_29	ends_in_intron	10945	10945	-	asmbl_38586	none	Trinity_GG_33820_c0_g1_i3,blat.proc3829901.chain_3091	2	STRG.29992.1,STRG.29992.2,STRG.29992.3,blat.proc3829901.chain_3089,blat.proc3829901.chain_3090	5
scaffold_16	alternate_exon	11335261	11335407	+	asmbl_17383	none	STRG.19652.3,Trinity_GG_10789_c0_g1_i2	2	STRG.19652.2	1
scaffold_16	ends_in_intron	3869586	3869586	-	asmbl_16183	none	Trinity_GG_27790_c0_g1_i1,blat.proc3829897.chain_218	2	STRG.19184.1,blat.proc3829897.chain_217	2
scaffold_1	alternate_exon	6817921	6817995	-	asmbl_389	none	blat.proc3829887.chain_383	1	STRG.476.1	1
scaffold_11	starts_in_intron	17069561	17069561	-	asmbl_7221	none	Trinity_GG_25032_c1_g1_i2,blat.proc3829893.chain_2782	2	STRG.14359.1,STRG.14359.2,STRG.14359.3,blat.proc3829893.chain_2779,blat.proc3829893.chain_2780,blat.proc3829893.chain_2781	6
scaffold_17	alt_donor	14040941	14040942	+	asmbl_18495	none	STRG.20863.2	1	STRG.20863.3	1
scaffold_10	spliced_intron	6757359	6757457	-	asmbl_3417	none	STRG.12497.1,blat.proc3829893.chain_986	2	blat.proc3829893.chain_985	1
scaffold_2	alt_donor	862077	862078	+	asmbl_24132,asmbl_24133,asmbl_24135	none	STRG.1560.1,STRG.1560.2,blat.proc3829871.chain_1607,blat.proc3829871.chain_1609,blat.proc3829871.chain_1611	5	STRG.1560.3	1
scaffold_18	retained_intron	9163565	9163645	+	asmbl_20902	none	Trinity_GG_11895_c0_g1_i3,blat.proc3829881.chain_2507	2	STRG.21548.1,Trinity_GG_11895_c0_g1_i1,Trinity_GG_11895_c0_g1_i2,blat.proc3829881.chain_2505,blat.proc3829881.chain_2506	5
scaffold_10	alt_donor	3757862	3757863	-	asmbl_3135	none	STRG.12200.3	1	STRG.12200.4	1
scaffold_1	spliced_intron	14427728	14428504	-	asmbl_929	none	STRG.1042.3,blat.proc3829887.chain_963	2	STRG.1042.2,blat.proc3829887.chain_961	2
scaffold_23	spliced_intron	7279427	7279762	-	asmbl_31740	none	STRG.26034.1,blat.proc3829899.chain_3127	2	STRG.26034.2	1
scaffold_3	spliced_intron	18347334	18347419	-	asmbl_39560	none	STRG.4038.1,blat.proc3829889.chain_77	2	blat.proc3829873.chain_417	1
scaffold_4	starts_in_intron	653726	653726	-	asmbl_41079	none	Trinity_GG_19294_c0_g1_i1,blat.proc3829889.chain_201	2	STRG.4135.1,Trinity_GG_19294_c0_g1_i2,blat.proc3829889.chain_202	3
scaffold_9	retained_intron	7823073	7823170	-	asmbl_55078	none	blat.proc3829891.chain_3345	1	STRG.11215.1,blat.proc3829891.chain_3346	2
scaffold_5	retained_intron	10303566	10303683	-	asmbl_45728	none	blat.proc3829889.chain_2407	1	STRG.6325.1,blat.proc3829889.chain_2403,blat.proc3829889.chain_2404,blat.proc3829889.chain_2405,blat.proc3829889.chain_2406,blat.proc3829889.chain_2408	6
scaffold_17	alt_donor	607174	607175	-	asmbl_18674,asmbl_18675	none	STRG.19894.1,STRG.19894.2	2	STRG.19894.3	1
scaffold_7	ends_in_intron	4036405	4036405	+	asmbl_50588,asmbl_50589	none	Trinity_GG_4801_c0_g1_i3,Trinity_GG_4801_c0_g1_i4,blat.proc3829875.chain_1152,blat.proc3829875.chain_1154	4	STRG.8788.1,STRG.8788.2,Trinity_GG_4801_c0_g1_i1,blat.proc3829875.chain_1153	4
scaffold_8	starts_in_intron	9885111	9885111	+	asmbl_52120	none	blat.proc3829875.chain_2744	1	STRG.10229.1,STRG.10229.2,Trinity_GG_5690_c0_g1_i4,blat.proc3829875.chain_2741,blat.proc3829875.chain_2743	5
scaffold_18	retained_intron	7686561	7686884	+	asmbl_20801,asmbl_20802,asmbl_20808,asmbl_20810	none	STRG.21464.2,STRG.21464.4,Trinity_GG_11863_c0_g1_i9,blat.proc3829881.chain_2433,blat.proc3829881.chain_2434,blat.proc3829881.chain_2435,blat.proc3829881.chain_2436	7	STRG.21464.1,Trinity_GG_11863_c0_g1_i8,blat.proc3829881.chain_2437,blat.proc3829881.chain_2439	4
scaffold_3	spliced_intron	10304998	10305546	+	asmbl_40218	none	STRG.3466.1,Trinity_GG_1968_c0_g2_i1,blat.proc3829871.chain_3656	3	STRG.3466.2,Trinity_GG_1968_c0_g2_i3,Trinity_GG_1968_c3_g1_i1,blat.proc3829871.chain_3657,blat.proc3829871.chain_3660	5
scaffold_2	alternate_exon	7323533	7324281	+	asmbl_24599	none	STRG.2062.2	1	STRG.2062.3,Trinity_GG_1176_c0_g1_i1,blat.proc3829871.chain_2160	3
scaffold_28	spliced_intron	2198918	2199018	+	asmbl_38038,asmbl_38041	none	STRG.29368.4,Trinity_GG_16268_c1_g1_i1,blat.proc3829885.chain_2448	3	STRG.29368.3,Trinity_GG_16268_c1_g1_i2,blat.proc3829885.chain_2449	3
scaffold_9	alt_donor	6905102	6905103	-	asmbl_55059	none	STRG.11190.1,Trinity_GG_23218_c0_g1_i1,blat.proc3829891.chain_3336	3	Trinity_GG_23218_c0_g1_i5,blat.proc3829891.chain_3339	2
scaffold_3	spliced_intron	17535333	17535434	-	asmbl_39516,asmbl_39518,asmbl_39519	none	STRG.3987.1,STRG.3987.2,STRG.3987.3,blat.proc3829889.chain_89,blat.proc3829889.chain_92	5	STRG.3987.4,blat.proc3829889.chain_90,blat.proc3829889.chain_91	3
scaffold_20	retained_exon	2290959	2291069	+	asmbl_25636	none	STRG.22956.1,blat.proc3829883.chain_108	2	STRG.22956.2	1
scaffold_13	skipped_exon	9337018	9337432	-	asmbl_9985	none	STRG.16186.4	1	STRG.16186.1,STRG.16186.2,STRG.16186.3,blat.proc3829895.chain_952,blat.proc3829895.chain_954	5
scaffold_20	spliced_intron	4262257	4262277	-	asmbl_26649	none	STRG.23096.2	1	STRG.23096.1	1
scaffold_25	alt_acceptor	3672983	3672984	+	asmbl_33441	none	STRG.27293.1,Trinity_GG_15048_c0_g1_i1,blat.proc3829885.chain_320	3	STRG.27293.2	1
scaffold_17	alt_acceptor	9832728	9832729	-	asmbl_19244,asmbl_19245,asmbl_19248,asmbl_19249	none	STRG.20586.1,STRG.20586.4,blat.proc3829897.chain_1537,blat.proc3829897.chain_1538,blat.proc3829897.chain_1539,blat.proc3829897.chain_1540	6	STRG.20586.2,STRG.20586.3	2
scaffold_2	retained_intron	15274237	15274329	+	asmbl_25032,asmbl_25033,asmbl_25036,asmbl_25043	none	blat.proc3829871.chain_2524,blat.proc3829871.chain_2528,blat.proc3829871.chain_2533,blat.proc3829871.chain_2535,blat.proc3829871.chain_2536	5	STRG.2481.1,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	8
scaffold_13	alternate_exon	10229528	10241962	-	asmbl_10017	none	STRG.16243.4	1	STRG.16243.2,blat.proc3829895.chain_976	2
scaffold_8	starts_in_intron	6953776	6953776	+	asmbl_51965	none	blat.proc3829875.chain_2545	1	STRG.10051.1,blat.proc3829875.chain_2544	2
scaffold_13	spliced_intron	4461177	4462126	-	asmbl_9596	none	STRG.15756.1	1	STRG.15756.2,Trinity_GG_25865_c0_g1_i1,blat.proc3829895.chain_502,blat.proc3829895.chain_504	4
scaffold_18	alt_acceptor	13150111	13150112	-	asmbl_20195	none	STRG.21746.1	1	STRG.21746.3	1
scaffold_5	spliced_intron	18562167	18562393	+	asmbl_44922,asmbl_44926,asmbl_44927	none	STRG.6978.1,STRG.6978.2,STRG.6978.4,blat.proc3829873.chain_3147	4	STRG.6978.3,STRG.6978.5,Trinity_GG_3847_c0_g1_i3,blat.proc3829873.chain_3149	4
scaffold_19	ends_in_intron	1649154	1649154	+	asmbl_22053	none	blat.proc3829881.chain_2885	1	STRG.21904.1,blat.proc3829881.chain_2884	2
scaffold_5	alt_acceptor	16583734	16583735	-	asmbl_46137	none	STRG.6840.2	1	blat.proc3829889.chain_2887,blat.proc3829889.chain_2890	2
scaffold_4	retained_intron	3211226	3211758	-	asmbl_41150	none	STRG.4241.1,Trinity_GG_19341_c0_g1_i2,Trinity_GG_19341_c0_g1_i3,blat.proc3829889.chain_286,blat.proc3829889.chain_287	5	STRG.4241.2	1
scaffold_21	retained_exon	10329938	10330394	-	asmbl_28062	none	STRG.24486.3	1	STRG.24486.2	1
scaffold_14	retained_intron	10410634	10411783	-	asmbl_13402,asmbl_13404	none	STRG.17378.1,Trinity_GG_26748_c0_g1_i1,Trinity_GG_26748_c0_g1_i2,Trinity_GG_26748_c0_g1_i3,blat.proc3829895.chain_2086,blat.proc3829895.chain_2088	6	blat.proc3829895.chain_2087	1
scaffold_16	alternate_exon	6118349	6118441	+	asmbl_17062	none	blat.proc3829881.chain_188	1	STRG.19331.2	1
scaffold_19	starts_in_intron	3423586	3423586	-	asmbl_21310	none	blat.proc3829897.chain_2778	1	STRG.22013.1	1
scaffold_1	alt_acceptor	2789626	2789627	+	asmbl_1547	none	STRG.177.1,blat.proc3829871.chain_205	2	STRG.177.2,blat.proc3829871.chain_204	2
scaffold_15	alt_donor	15353636	15353637	+	asmbl_14707,asmbl_14708	none	Trinity_GG_10368_c0_g1_i7,Trinity_GG_10368_c0_g1_i9,blat.proc3829879.chain_3503,blat.proc3829879.chain_3505	4	STRG.18909.3,Trinity_GG_10368_c0_g1_i4,blat.proc3829879.chain_3501	3
scaffold_23	alternate_exon	7685949	7687701	+	asmbl_31015	none	STRG.26063.6	1	STRG.26063.2,Trinity_GG_14406_c0_g1_i2,Trinity_GG_14406_c2_g1_i1,blat.proc3829883.chain_2980,blat.proc3829883.chain_2983	5
scaffold_13	alt_donor	14443933	14443934	-	asmbl_10156	none	STRG.16487.1,blat.proc3829895.chain_1205	2	STRG.16487.2,blat.proc3829895.chain_1206	2
scaffold_22	retained_intron	507350	507876	-	asmbl_29851	none	Trinity_GG_30818_c0_g1_i3,Trinity_GG_30818_c0_g1_i7,blat.proc3829899.chain_1828,blat.proc3829899.chain_1833	4	STRG.24685.2,STRG.24685.3,STRG.24685.4,STRG.24685.5,Trinity_GG_30818_c0_g1_i13,Trinity_GG_30818_c0_g1_i15,Trinity_GG_30818_c0_g1_i17,Trinity_GG_30818_c0_g1_i19,Trinity_GG_30818_c0_g1_i8,blat.proc3829899.chain_1823,blat.proc3829899.chain_1824,blat.proc3829899.chain_1825,blat.proc3829899.chain_1827,blat.proc3829899.chain_1830,blat.proc3829899.chain_1831,blat.proc3829899.chain_1832,blat.proc3829899.chain_1836	17
scaffold_2	ends_in_intron	16087504	16087504	-	asmbl_23683	none	Trinity_GG_18420_c0_g1_i3,blat.proc3829887.chain_2400	2	STRG.2559.1,blat.proc3829887.chain_2398,blat.proc3829887.chain_2399,blat.proc3829887.chain_2401	4
scaffold_8	alt_donor	9167853	9167854	-	asmbl_53012,asmbl_53014	none	STRG.10173.1,blat.proc3829891.chain_2227,blat.proc3829891.chain_2230	3	STRG.10173.2,STRG.10173.3,blat.proc3829891.chain_2228	3
scaffold_15	starts_in_intron	12132471	12132471	-	asmbl_15579	none	blat.proc3829895.chain_3379	1	STRG.18680.1,blat.proc3829895.chain_3377,blat.proc3829895.chain_3378	3
scaffold_5	retained_intron	4754616	4754915	+	asmbl_43961	none	blat.proc3829873.chain_2070	1	STRG.5927.1,blat.proc3829873.chain_2071	2
scaffold_24	spliced_intron	879811	879831	+	asmbl_32063	none	STRG.26351.3	1	STRG.26351.1,blat.proc3829883.chain_3323	2
scaffold_3	skipped_exon	10628316	10630201	+	asmbl_40235	none	STRG.3509.1,blat.proc3829871.chain_3608	2	STRG.3509.2,STRG.3509.3,blat.proc3829871.chain_3604,blat.proc3829871.chain_3605,blat.proc3829871.chain_3606,blat.proc3829871.chain_3607	6
scaffold_21	starts_in_intron	5453663	5453663	+	asmbl_28588,asmbl_28590	none	Trinity_GG_13358_c1_g1_i2,blat.proc3829883.chain_1252,blat.proc3829883.chain_1253	3	STRG.24067.1,Trinity_GG_13358_c1_g2_i1,blat.proc3829883.chain_1255	3
scaffold_4	alternate_exon	7306509	7306578	+	asmbl_42822	none	STRG.4559.1,blat.proc3829873.chain_940	2	Trinity_GG_2535_c1_g1_i2,blat.proc3829873.chain_941	2
scaffold_9	alt_donor	8395535	8395536	+	asmbl_54156,asmbl_54160,asmbl_54161	none	STRG.11249.2,STRG.11249.3,blat.proc3829877.chain_19,blat.proc3829877.chain_21	4	STRG.11249.1,STRG.11249.5,blat.proc3829877.chain_17,blat.proc3829877.chain_20	4
scaffold_2	alt_acceptor	5440710	5440711	+	asmbl_24448	none	STRG.1951.3	1	STRG.1951.2,blat.proc3829871.chain_1988	2
scaffold_11	starts_in_intron	3187823	3187823	+	asmbl_5368	none	Trinity_GG_7372_c0_g1_i2,blat.proc3829877.chain_1911	2	blat.proc3829877.chain_1912,blat.proc3829877.chain_1913	2
scaffold_26	alt_acceptor	2241320	2241321	-	asmbl_34718	none	STRG.27938.1,blat.proc3829901.chain_1174	2	STRG.27938.2,blat.proc3829901.chain_1175	2
scaffold_10	alt_donor	16997918	16997919	-	asmbl_3923	none	STRG.13131.1,Trinity_GG_24371_c0_g1_i1,blat.proc3829893.chain_1626	3	STRG.13131.2,Trinity_GG_24371_c0_g1_i2,blat.proc3829893.chain_1627	3
scaffold_13	starts_in_intron	363940	363940	-	asmbl_9285	none	Trinity_GG_25666_c0_g1_i8,blat.proc3829895.chain_161	2	STRG.15426.1,STRG.15426.3,STRG.15426.4,STRG.15426.5,Trinity_GG_25666_c0_g1_i1,Trinity_GG_25666_c0_g1_i10,Trinity_GG_25666_c0_g1_i11,Trinity_GG_25666_c0_g1_i3,Trinity_GG_25666_c0_g1_i6,blat.proc3829895.chain_155,blat.proc3829895.chain_156,blat.proc3829895.chain_159,blat.proc3829895.chain_162,blat.proc3829895.chain_165	14
scaffold_3	alt_acceptor	14764626	14764627	-	asmbl_39365,asmbl_39366	none	STRG.3818.3,Trinity_GG_19114_c0_g1_i2,blat.proc3829887.chain_3599	3	STRG.3818.2,STRG.3818.4,Trinity_GG_19114_c0_g1_i3,blat.proc3829887.chain_3601	4
scaffold_10	skipped_exon	7250455	7252650	-	asmbl_3449,asmbl_3453	none	STRG.12526.1,blat.proc3829893.chain_1021,blat.proc3829893.chain_1022,blat.proc3829893.chain_1025	4	STRG.12526.2,blat.proc3829893.chain_1023,blat.proc3829893.chain_1024	3
scaffold_1	starts_in_intron	14360777	14360777	-	asmbl_910	none	blat.proc3829887.chain_886	1	STRG.1033.1,STRG.1033.2,STRG.1033.3,blat.proc3829887.chain_882,blat.proc3829887.chain_884,blat.proc3829887.chain_885,blat.proc3829887.chain_887	7
scaffold_23	spliced_intron	6854401	6855600	-	asmbl_31703,asmbl_31704	none	STRG.26000.2,STRG.26000.3	2	STRG.26000.1,blat.proc3829899.chain_3088	2
scaffold_13	starts_in_intron	1220016	1220016	+	asmbl_10512	none	Trinity_GG_8531_c0_g1_i3,blat.proc3829879.chain_221	2	STRG.15477.1,blat.proc3829879.chain_220,blat.proc3829879.chain_222	3
scaffold_22	spliced_intron	11345296	11345475	-	asmbl_30437	none	blat.proc3829899.chain_2555	1	STRG.25451.1	1
scaffold_22	alt_acceptor	494953	494954	-	asmbl_29848	none	STRG.24681.1,Trinity_GG_30805_c0_g1_i1,blat.proc3829899.chain_1798	3	STRG.24681.2	1
scaffold_5	starts_in_intron	2620745	2620745	+	asmbl_43854	none	Trinity_GG_3129_c0_g1_i2,blat.proc3829873.chain_1903	2	STRG.5778.1,STRG.5778.2,blat.proc3829873.chain_1902,blat.proc3829873.chain_1904	4
scaffold_2	alternate_exon	4018047	4018156	-	asmbl_23063	none	STRG.1843.1,blat.proc3829887.chain_1706	2	STRG.1843.2	1
scaffold_11	retained_intron	8192814	8192980	-	asmbl_6834	none	Trinity_GG_24748_c0_g1_i2,blat.proc3829893.chain_2273	2	STRG.13814.1,Trinity_GG_24748_c0_g1_i3,blat.proc3829893.chain_2274	3
scaffold_26	skipped_exon	4141796	4142563	+	asmbl_35401	none	STRG.28106.4	1	STRG.28106.1,STRG.28106.2,STRG.28106.3	3
scaffold_20	spliced_intron	5180909	5180942	+	asmbl_25761	none	STRG.23141.1	1	STRG.23141.2	1
scaffold_2	alt_acceptor	16362790	16362791	+	asmbl_25157,asmbl_25158	none	STRG.2574.1,Trinity_GG_1456_c0_g1_i1,Trinity_GG_1456_c0_g1_i2,blat.proc3829871.chain_2762,blat.proc3829871.chain_2764	5	STRG.2574.3,STRG.2574.4	2
scaffold_13	starts_in_intron	2475471	2475471	-	asmbl_9418	none	Trinity_GG_25729_c0_g1_i2,blat.proc3829895.chain_298	2	STRG.15539.1,STRG.15539.2,blat.proc3829895.chain_297,blat.proc3829895.chain_299	4
scaffold_27	alt_donor	1553635	1553636	+	asmbl_35988	none	STRG.28622.1,blat.proc3829885.chain_1648	2	STRG.28622.2	1
scaffold_10	spliced_intron	11909255	11909403	+	asmbl_4776,asmbl_4779,asmbl_4780	none	STRG.12815.1,STRG.12815.2,Trinity_GG_7071_c0_g1_i5,blat.proc3829877.chain_1401,blat.proc3829877.chain_1402,blat.proc3829877.chain_1403	6	Trinity_GG_7071_c0_g1_i2,Trinity_GG_7071_c0_g1_i3,blat.proc3829877.chain_1400,blat.proc3829877.chain_1404	4
scaffold_5	retained_intron	14124559	14124669	-	asmbl_45969	none	blat.proc3829873.chain_2715	1	STRG.6617.1	1
scaffold_8	spliced_intron	9872480	9872652	-	asmbl_53056	none	STRG.10226.2	1	blat.proc3829891.chain_2379	1
scaffold_8	alt_donor	9374318	9374319	-	asmbl_53020,asmbl_53023	none	STRG.10194.3,STRG.10194.4,blat.proc3829891.chain_2358	3	STRG.10194.5,STRG.10194.6,blat.proc3829891.chain_2355,blat.proc3829891.chain_2356	4
scaffold_24	retained_intron	10423260	10423576	+	asmbl_32561	none	Trinity_GG_14914_c0_g1_i1,blat.proc3829885.chain_118	2	STRG.26986.1,blat.proc3829885.chain_119	2
scaffold_8	starts_in_intron	9946752	9946752	-	asmbl_53080	none	STRG.10238.2,blat.proc3829891.chain_2415	2	STRG.10238.1,STRG.10238.3,Trinity_GG_22726_c0_g1_i1,blat.proc3829891.chain_2413,blat.proc3829891.chain_2414	5
scaffold_2	starts_in_intron	8316548	8316548	+	asmbl_24672	none	STRG.2126.2,blat.proc3829871.chain_2265	2	STRG.2126.1,blat.proc3829871.chain_2266	2
scaffold_3	spliced_intron	17094412	17095225	-	asmbl_39485	none	STRG.3947.1,blat.proc3829889.chain_20	2	Trinity_GG_19201_c0_g1_i1,Trinity_GG_19201_c0_g1_i4,blat.proc3829889.chain_19,blat.proc3829889.chain_21	4
scaffold_9	spliced_intron	9706825	9707000	+	asmbl_54221	none	blat.proc3829877.chain_114	1	STRG.11336.3,Trinity_GG_6324_c1_g1_i12,blat.proc3829877.chain_113	3
scaffold_1	alternate_exon	5996766	6000369	-	asmbl_317	none	STRG.403.2,blat.proc3829887.chain_309	2	blat.proc3829887.chain_308	1
scaffold_18	alt_acceptor	13662446	13662447	+	asmbl_21052	none	STRG.21791.1,blat.proc3829881.chain_2751	2	STRG.21791.2	1
scaffold_17	alt_acceptor	1291368	1291369	-	asmbl_18727,asmbl_18729	none	STRG.19952.3,blat.proc3829897.chain_836,blat.proc3829897.chain_838	3	STRG.19952.1,STRG.19952.4,blat.proc3829897.chain_840,blat.proc3829897.chain_843	4
scaffold_16	spliced_intron	125457	125550	+	asmbl_16785	none	STRG.18995.1,Trinity_GG_10419_c0_g1_i4,blat.proc3829879.chain_3618	3	STRG.18995.2,Trinity_GG_10419_c0_g1_i2,Trinity_GG_10419_c0_g1_i3,blat.proc3829879.chain_3619,blat.proc3829879.chain_3620	5
scaffold_13	retained_intron	3735623	3735769	+	asmbl_10710	none	Trinity_GG_8631_c0_g1_i6,blat.proc3829879.chain_395	2	STRG.15686.1,STRG.15686.2,STRG.15686.3,Trinity_GG_8631_c0_g1_i4,Trinity_GG_8631_c0_g1_i8,blat.proc3829879.chain_389,blat.proc3829879.chain_390,blat.proc3829879.chain_393,blat.proc3829879.chain_394,blat.proc3829879.chain_396	10
scaffold_28	retained_intron	5390808	5391483	+	asmbl_38280	none	STRG.29664.4,Trinity_GG_16450_c0_g1_i3,blat.proc3829885.chain_2785	3	STRG.29664.3,Trinity_GG_16450_c0_g1_i7,blat.proc3829885.chain_2783	3
scaffold_21	spliced_intron	4649422	4649538	-	asmbl_27603	none	STRG.23997.1,blat.proc3829899.chain_1058	2	blat.proc3829899.chain_1057	1
scaffold_18	spliced_intron	5606473	5606848	+	asmbl_20627	none	STRG.21306.1,blat.proc3829881.chain_2224	2	Trinity_GG_11735_c0_g1_i2,blat.proc3829881.chain_2225	2
scaffold_5	spliced_intron	18560743	18560926	+	asmbl_44923,asmbl_44924,asmbl_44927	none	STRG.6978.4,Trinity_GG_3847_c0_g1_i2,Trinity_GG_3847_c0_g1_i8,blat.proc3829873.chain_3146,blat.proc3829873.chain_3148	5	STRG.6978.5	1
scaffold_12	skipped_exon	11915465	11917767	-	asmbl_7966	none	STRG.15087.1,Trinity_GG_25438_c0_g1_i2,blat.proc3829893.chain_3492	3	STRG.15087.2	1
scaffold_2	starts_in_intron	13343721	13343721	-	asmbl_23514	none	blat.proc3829887.chain_2247	1	STRG.2354.1,blat.proc3829887.chain_2248	2
scaffold_4	alt_acceptor	4928335	4928336	+	asmbl_42648,asmbl_42650	none	STRG.4392.2,STRG.4392.3,blat.proc3829873.chain_706	3	STRG.4392.1,blat.proc3829873.chain_707	2
scaffold_6	retained_intron	6708324	6709026	-	asmbl_48401	none	blat.proc3829889.chain_3635	1	STRG.7578.1,blat.proc3829889.chain_3636	2
scaffold_7	starts_in_intron	223047	223047	-	asmbl_49492	none	blat.proc3829891.chain_967	1	Trinity_GG_21934_c0_g2_i2,blat.proc3829891.chain_966	2
scaffold_14	alternate_exon	2486375	2486900	+	asmbl_11837	none	STRG.16849.1,Trinity_GG_9277_c0_g1_i1	2	Trinity_GG_9277_c0_g1_i2	1
scaffold_24	alt_donor	3754123	3754124	-	asmbl_32832	none	Trinity_GG_31855_c0_g1_i2,blat.proc3829899.chain_3613	2	STRG.26554.1,STRG.26554.2,blat.proc3829899.chain_3616	3
scaffold_1	alt_donor	10414943	10414944	-	asmbl_592	none	STRG.680.1,blat.proc3829887.chain_609	2	STRG.680.3,STRG.680.4	2
scaffold_22	alt_acceptor	4578376	4578377	+	asmbl_29322	none	blat.proc3829883.chain_1899	1	STRG.24871.1,blat.proc3829883.chain_1895,blat.proc3829883.chain_1897	3
scaffold_13	starts_in_intron	6685950	6685950	+	asmbl_10949	none	blat.proc3829879.chain_625	1	STRG.15941.1,Trinity_GG_8757_c0_g1_i1,blat.proc3829879.chain_626	3
scaffold_24	retained_intron	6223967	6224182	-	asmbl_32928,asmbl_32929,asmbl_32932	none	Trinity_GG_31899_c0_g1_i10,blat.proc3829899.chain_3687,blat.proc3829899.chain_3689,blat.proc3829899.chain_3691,blat.proc3829899.chain_3695	5	STRG.26664.1,blat.proc3829899.chain_3686,blat.proc3829899.chain_3690,blat.proc3829899.chain_3693,blat.proc3829899.chain_3694,blat.proc3829899.chain_3696	6
scaffold_6	retained_exon	14196364	14197561	+	asmbl_47528	none	STRG.8178.1,STRG.8178.3,blat.proc3829875.chain_527,blat.proc3829875.chain_528	4	STRG.8178.2,blat.proc3829875.chain_525	2
scaffold_6	retained_intron	17671975	17672065	+	asmbl_47711,asmbl_47714	none	STRG.8454.2,Trinity_GG_4651_c0_g1_i4,blat.proc3829875.chain_848,blat.proc3829875.chain_849	4	STRG.8454.3,STRG.8454.4,blat.proc3829875.chain_846	3
scaffold_14	alt_acceptor	11246784	11246785	-	asmbl_13445,asmbl_13448	none	STRG.17444.3,blat.proc3829895.chain_2125	2	STRG.17444.1,STRG.17444.4,blat.proc3829895.chain_2126	3
scaffold_11	alt_donor	6658880	6658881	-	asmbl_6709,asmbl_6711	none	STRG.13702.2,STRG.13702.3,Trinity_GG_24688_c0_g1_i1,blat.proc3829893.chain_2159	4	STRG.13702.1,blat.proc3829893.chain_2158	2
scaffold_8	retained_intron	13133136	13133848	-	asmbl_53271,asmbl_53272	none	STRG.10481.2,blat.proc3829891.chain_2640,blat.proc3829891.chain_2641	3	blat.proc3829891.chain_2642	1
scaffold_8	retained_exon	12810505	12810554	-	asmbl_53238,asmbl_53239	none	STRG.10465.2,blat.proc3829891.chain_2603	2	STRG.10465.1,blat.proc3829891.chain_2604	2
scaffold_10	alt_acceptor	395148	395149	+	asmbl_4140	none	STRG.11918.3	1	STRG.11918.1,STRG.11918.2,Trinity_GG_6634_c0_g1_i1,Trinity_GG_6634_c0_g1_i2,blat.proc3829877.chain_628,blat.proc3829877.chain_629	6
scaffold_1	spliced_intron	14333858	14334027	-	asmbl_894	none	STRG.1029.1,blat.proc3829887.chain_929	2	STRG.1029.2,STRG.1029.3,blat.proc3829887.chain_930,blat.proc3829887.chain_931	4
scaffold_8	ends_in_intron	2664104	2664104	+	asmbl_51719	none	Trinity_GG_5400_c2_g1_i1,blat.proc3829875.chain_2210	2	STRG.9797.1,STRG.9797.2,Trinity_GG_5400_c0_g1_i1,Trinity_GG_5400_c0_g1_i2,blat.proc3829875.chain_2207,blat.proc3829875.chain_2208	6
scaffold_15	alternate_exon	9986735	9988642	+	asmbl_14380	none	STRG.18500.1,Trinity_GG_10157_c1_g1_i2,blat.proc3829879.chain_3123	3	STRG.18500.2,Trinity_GG_10157_c1_g1_i1,blat.proc3829879.chain_3124	3
scaffold_5	starts_in_intron	998128	998128	+	asmbl_43775	none	Trinity_GG_3046_c0_g1_i3,blat.proc3829873.chain_1762	2	STRG.5643.1,Trinity_GG_3046_c0_g1_i1,blat.proc3829873.chain_1761	3
scaffold_19	retained_exon	5461706	5461769	+	asmbl_22179	none	blat.proc3829881.chain_3055	1	STRG.22103.1,blat.proc3829881.chain_3056,blat.proc3829881.chain_3058	3
scaffold_21	alt_acceptor	3820506	3820507	-	asmbl_27571	none	STRG.23957.1,blat.proc3829899.chain_1032	2	STRG.23957.2	1
scaffold_13	alternate_exon	15509895	15510435	+	asmbl_11491	none	blat.proc3829879.chain_1334	1	STRG.16580.4	1
scaffold_14	retained_exon	4781520	4781580	-	asmbl_13051,asmbl_13052,asmbl_13053,asmbl_13054	none	STRG.16995.1,STRG.16995.2,STRG.16995.4,blat.proc3829895.chain_1702,blat.proc3829895.chain_1703	5	STRG.16995.3	1
scaffold_2	alternate_exon	6906166	6908216	+	asmbl_24544	none	STRG.2036.1	1	STRG.2036.3	1
scaffold_1950	alt_acceptor	1064	1065	-	asmbl_22790	none	STRG.30656.2	1	STRG.30656.1	1
scaffold_6	alt_acceptor	13691133	13691134	+	asmbl_47465	none	STRG.8108.1,blat.proc3829875.chain_479	2	STRG.8108.2	1
scaffold_11	spliced_intron	17374697	17374848	+	asmbl_6202,asmbl_6205	none	STRG.14392.1,STRG.14392.2,blat.proc3829877.chain_2826	3	Trinity_GG_7898_c0_g1_i2,blat.proc3829877.chain_2824	2
scaffold_27	starts_in_intron	5051007	5051007	-	asmbl_36936,asmbl_36937	none	STRG.28917.1,STRG.28917.4	2	STRG.28917.5	1
scaffold_23	retained_intron	3655994	3656154	+	asmbl_30763,asmbl_30765	none	STRG.25778.2,Trinity_GG_14190_c0_g1_i1,Trinity_GG_14190_c0_g1_i3,blat.proc3829883.chain_2611,blat.proc3829883.chain_2612	5	STRG.25778.1,blat.proc3829883.chain_2610	2
scaffold_13	alternate_exon	11381832	11382362	-	asmbl_10043,asmbl_10053,asmbl_10054	none	STRG.16287.2,STRG.16287.7,Trinity_GG_26140_c0_g1_i4,Trinity_GG_26140_c0_g1_i5,blat.proc3829895.chain_1024,blat.proc3829895.chain_1026	6	STRG.16287.4,Trinity_GG_26140_c0_g1_i7,Trinity_GG_26140_c0_g1_i8,blat.proc3829895.chain_1030	4
scaffold_5	retained_exon	5051789	5051848	+	asmbl_43999	none	STRG.5949.1,blat.proc3829873.chain_2145	2	STRG.5949.2,STRG.5949.3,STRG.5949.4,blat.proc3829873.chain_2144	4
scaffold_14	alt_acceptor	8046533	8046534	+	asmbl_12183	none	STRG.17213.2	1	STRG.17213.1,blat.proc3829879.chain_1961	2
scaffold_23	spliced_intron	3573591	3574929	+	asmbl_30745,asmbl_30748	none	STRG.25757.2,Trinity_GG_14182_c0_g1_i4,blat.proc3829883.chain_2594	3	blat.proc3829883.chain_2595,blat.proc3829883.chain_2597	2
scaffold_21	starts_in_intron	732027	732027	+	asmbl_28314	none	Trinity_GG_13126_c0_g1_i2,blat.proc3829883.chain_852	2	STRG.23754.1,STRG.23754.2,STRG.23754.3,STRG.23754.4,STRG.23754.5,Trinity_GG_13126_c0_g1_i1,blat.proc3829883.chain_853	7
scaffold_18	alt_acceptor	4124777	4124778	+	asmbl_20525,asmbl_20526	none	STRG.21203.1,Trinity_GG_11620_c0_g1_i1,Trinity_GG_11620_c0_g1_i3,blat.proc3829881.chain_1990,blat.proc3829881.chain_1992	5	STRG.21203.2,STRG.21203.3,Trinity_GG_11620_c0_g1_i2,blat.proc3829881.chain_1991	4
scaffold_16	retained_intron	6195012	6195163	+	asmbl_17086	none	Trinity_GG_10552_c0_g1_i1,blat.proc3829881.chain_124	2	STRG.19373.1,STRG.19373.2,STRG.19373.3,STRG.19373.4,blat.proc3829881.chain_125,blat.proc3829881.chain_126,blat.proc3829881.chain_127,blat.proc3829881.chain_128,blat.proc3829881.chain_129,blat.proc3829881.chain_130,blat.proc3829881.chain_131	11
scaffold_16	alternate_exon	14544532	14544701	-	asmbl_16643	none	STRG.19822.4	1	STRG.19822.2	1
scaffold_27	retained_intron	3130050	3130150	+	asmbl_36151	none	Trinity_GG_15900_c1_g1_i2,blat.proc3829885.chain_1768	2	STRG.28778.3,Trinity_GG_15900_c1_g1_i3,blat.proc3829885.chain_1769,blat.proc3829885.chain_1770	4
scaffold_13	starts_in_intron	9180457	9180457	-	asmbl_9966	none	blat.proc3829895.chain_929	1	STRG.16158.1,STRG.16158.2,blat.proc3829895.chain_927,blat.proc3829895.chain_928	4
scaffold_13	retained_exon	2334117	2334931	+	asmbl_10589,asmbl_10591	none	STRG.15543.4,STRG.15543.9	2	STRG.15543.3,STRG.15543.6,STRG.15543.7	3
scaffold_14	ends_in_intron	13899086	13899086	+	asmbl_12496	none	blat.proc3829879.chain_2349	1	STRG.17653.2,STRG.17653.4,STRG.17653.5	3
scaffold_2	retained_intron	4836605	4836722	-	asmbl_23130	none	STRG.1904.2	1	STRG.1904.1	1
scaffold_20	alternate_exon	5439254	5441018	+	asmbl_25768	none	STRG.23146.1,Trinity_GG_12772_c0_g1_i1,blat.proc3829883.chain_268	3	STRG.23146.2,Trinity_GG_12772_c0_g1_i3,blat.proc3829883.chain_269	3
scaffold_13	alternate_exon	3705936	3706231	-	asmbl_9525	none	STRG.15671.1	1	STRG.15671.4,STRG.15671.5,STRG.15671.6,blat.proc3829895.chain_438,blat.proc3829895.chain_439	5
scaffold_12	alt_acceptor	8325307	8325308	+	asmbl_8781	none	STRG.14852.1,blat.proc3829877.chain_3391	2	STRG.14852.2	1
scaffold_19	starts_in_intron	1037764	1037764	+	asmbl_22031	none	blat.proc3829881.chain_2842	1	STRG.21879.1,STRG.21879.2,blat.proc3829881.chain_2841	3
scaffold_15	alt_donor	9053596	9053597	-	asmbl_15391	none	Trinity_GG_27384_c2_g1_i1,blat.proc3829895.chain_3229,blat.proc3829895.chain_3235	3	STRG.18449.2,blat.proc3829895.chain_3232	2
scaffold_3	alt_acceptor	15785222	15785223	-	asmbl_39399	none	STRG.3856.2	1	STRG.3856.1,blat.proc3829887.chain_3691	2
scaffold_2	skipped_exon	893116	894265	+	asmbl_24156,asmbl_24158,asmbl_24160	none	STRG.1565.2,STRG.1565.3,STRG.1565.4,blat.proc3829871.chain_1635,blat.proc3829871.chain_1636	5	Trinity_GG_899_c0_g2_i7	1
scaffold_10	ends_in_intron	14700317	14700317	+	asmbl_4931	none	blat.proc3829877.chain_1499	1	STRG.13011.1,STRG.13011.2,blat.proc3829877.chain_1497,blat.proc3829877.chain_1498,blat.proc3829877.chain_1500,blat.proc3829877.chain_1501	6
scaffold_12	alternate_exon	16315446	16315493	-	asmbl_8258,asmbl_8259,asmbl_8260	none	blat.proc3829895.chain_112,blat.proc3829895.chain_113,blat.proc3829895.chain_114	3	STRG.15369.1,STRG.15369.2	2
scaffold_32	alt_donor	37579	37580	+	asmbl_40899	none	STRG.29997.2	1	blat.proc3829875.chain_987	1
scaffold_16	retained_intron	9145668	9145955	+	asmbl_17259,asmbl_17262	none	STRG.19502.3,blat.proc3829881.chain_392	2	STRG.19502.2	1
scaffold_15	ends_in_intron	4235225	4235225	+	asmbl_14079	none	blat.proc3829879.chain_2794	1	STRG.18154.1,blat.proc3829879.chain_2793	2
scaffold_8	starts_in_intron	10864907	10864907	-	asmbl_53120,asmbl_53123	none	STRG.10304.1,blat.proc3829891.chain_2483	2	STRG.10304.2,STRG.10304.3	2
scaffold_17	alternate_exon	10037315	10037857	-	asmbl_19272,asmbl_19273	none	STRG.20608.5,Trinity_GG_28623_c0_g1_i2,Trinity_GG_28623_c0_g1_i4,blat.proc3829897.chain_1586,blat.proc3829897.chain_1587	5	STRG.20608.2	1
scaffold_1	retained_intron	22129065	22129294	+	asmbl_2670	none	STRG.1476.1	1	STRG.1476.2	1
scaffold_19	alt_acceptor	13154957	13154958	-	asmbl_21823	none	STRG.22626.2,blat.proc3829897.chain_3410	2	STRG.22626.1,blat.proc3829897.chain_3409	2
scaffold_5	alt_donor	16152171	16152172	+	asmbl_44713	none	STRG.6791.1,blat.proc3829873.chain_2884	2	STRG.6791.2,blat.proc3829873.chain_2885	2
scaffold_3	alternate_exon	15574497	15574646	+	asmbl_40534	none	STRG.3845.4	1	STRG.3845.1,blat.proc3829873.chain_217,blat.proc3829873.chain_218,blat.proc3829873.chain_219	4
scaffold_13	starts_in_intron	7216203	7216203	+	asmbl_11013	none	blat.proc3829879.chain_693	1	STRG.16002.1,blat.proc3829879.chain_696,blat.proc3829879.chain_699,blat.proc3829879.chain_700,blat.proc3829879.chain_701	5
scaffold_26	alt_acceptor	5487188	5487189	+	asmbl_35525,asmbl_35528	none	STRG.28241.1,STRG.28241.2,Trinity_GG_15567_c0_g1_i5,Trinity_GG_15567_c0_g1_i7,Trinity_GG_15567_c0_g1_i8,blat.proc3829885.chain_1185,blat.proc3829885.chain_1187	7	STRG.28241.4,Trinity_GG_15567_c0_g1_i6,blat.proc3829885.chain_1184	3
scaffold_18	spliced_intron	8399580	8400469	+	asmbl_20857,asmbl_20859	none	STRG.21503.1,STRG.21503.2,blat.proc3829881.chain_2515	3	STRG.21503.3,blat.proc3829881.chain_2516	2
scaffold_22	ends_in_intron	205454	205454	+	asmbl_29111	none	Trinity_GG_13624_c0_g1_i3,blat.proc3829883.chain_1693	2	STRG.24659.1,STRG.24659.2,Trinity_GG_13624_c0_g1_i1,blat.proc3829883.chain_1691,blat.proc3829883.chain_1692	5
scaffold_8	starts_in_intron	9476973	9476973	-	asmbl_53041	none	Trinity_GG_22714_c0_g1_i6,blat.proc3829891.chain_2374	2	STRG.10199.1,blat.proc3829891.chain_2372,blat.proc3829891.chain_2373,blat.proc3829891.chain_2375	4
scaffold_1	spliced_intron	5205899	5206482	+	asmbl_1702,asmbl_1703,asmbl_1706,asmbl_1707	none	STRG.323.1,STRG.323.2,STRG.323.3,blat.proc3829871.chain_399,blat.proc3829871.chain_400,blat.proc3829871.chain_401	6	blat.proc3829871.chain_396,blat.proc3829871.chain_397,blat.proc3829871.chain_398	3
scaffold_6	spliced_intron	4319469	4319899	+	asmbl_46822,asmbl_46824	none	STRG.7402.2,blat.proc3829873.chain_3510	2	STRG.7402.1,Trinity_GG_4053_c2_g1_i2,blat.proc3829873.chain_3511,blat.proc3829873.chain_3513,blat.proc3829873.chain_3514	5
scaffold_15	spliced_intron	4492518	4492646	+	asmbl_14083,asmbl_14085,asmbl_14086,asmbl_14087,asmbl_14089	none	STRG.18165.1,STRG.18165.2,blat.proc3829879.chain_2746,blat.proc3829879.chain_2748,blat.proc3829879.chain_2749,blat.proc3829879.chain_2750	6	blat.proc3829879.chain_2747	1
scaffold_7	starts_in_intron	11246708	11246708	+	asmbl_51045	none	Trinity_GG_5108_c1_g1_i1,blat.proc3829875.chain_1653	2	STRG.9265.1	1
scaffold_1	ends_in_intron	6343007	6343007	+	asmbl_1826	none	blat.proc3829871.chain_497	1	STRG.434.1,STRG.434.2,blat.proc3829871.chain_494	3
scaffold_15	retained_intron	14324441	14324883	-	asmbl_15734,asmbl_15735,asmbl_15736	none	Trinity_GG_27599_c0_g1_i1,Trinity_GG_27599_c0_g1_i11,Trinity_GG_27599_c0_g1_i7,blat.proc3829895.chain_3600,blat.proc3829895.chain_3605	5	blat.proc3829895.chain_3603	1
scaffold_8	retained_exon	6809265	6809297	-	asmbl_52881	none	STRG.10035.1,blat.proc3829891.chain_2192	2	STRG.10035.2,blat.proc3829891.chain_2193	2
scaffold_15	starts_in_intron	1715728	1715728	-	asmbl_14982	none	blat.proc3829895.chain_2618	1	STRG.17964.1,blat.proc3829895.chain_2617	2
scaffold_22	alt_donor	10682938	10682939	-	asmbl_30385	none	STRG.25391.1	1	STRG.25391.2,STRG.25391.3	2
scaffold_12	alternate_exon	10180202	10180259	+	asmbl_8875	none	STRG.14975.1	1	STRG.14975.2,blat.proc3829877.chain_3490	2
scaffold_9	retained_exon	645343	645512	+	asmbl_53763	none	STRG.10785.2	1	STRG.10785.4	1
scaffold_8	retained_intron	11810649	11810780	+	asmbl_52258	none	blat.proc3829875.chain_2928	1	STRG.10378.1,blat.proc3829875.chain_2926,blat.proc3829875.chain_2927	3
scaffold_2	retained_intron	7466796	7467432	-	asmbl_23283,asmbl_23285,asmbl_23288	none	STRG.2075.2,STRG.2075.3,Trinity_GG_18127_c0_g1_i18,blat.proc3829887.chain_1893,blat.proc3829887.chain_1898	5	STRG.2075.4	1
scaffold_17	spliced_intron	12142249	12142794	+	asmbl_18390	none	STRG.20740.2,blat.proc3829881.chain_1581	2	STRG.20740.1,Trinity_GG_11387_c0_g1_i1,blat.proc3829881.chain_1582	3
scaffold_10	starts_in_intron	3398058	3398058	-	asmbl_3117	none	Trinity_GG_23800_c0_g1_i1,blat.proc3829893.chain_626	2	STRG.12162.1,Trinity_GG_23800_c0_g1_i3,blat.proc3829893.chain_625,blat.proc3829893.chain_627	4
scaffold_12	retained_intron	1973797	1973924	-	asmbl_7447	none	Trinity_GG_25081_c0_g1_i1,blat.proc3829893.chain_2860	2	STRG.14476.1	1
scaffold_25	retained_exon	3723384	3723482	+	asmbl_33454	none	STRG.27303.1,blat.proc3829885.chain_329	2	STRG.27303.2,STRG.27303.3,blat.proc3829885.chain_330	3
scaffold_9	retained_exon	14039466	14039546	+	asmbl_54498	none	STRG.11659.1,Trinity_GG_6520_c0_g1_i3,blat.proc3829877.chain_438	3	STRG.11659.2,Trinity_GG_6520_c0_g1_i4,blat.proc3829877.chain_436	3
scaffold_3	skipped_exon	14571129	14573597	-	asmbl_39345,asmbl_39346,asmbl_39349	none	STRG.3795.1,STRG.3795.2,blat.proc3829887.chain_3612,blat.proc3829887.chain_3613,blat.proc3829887.chain_3615	5	STRG.3795.3	1
scaffold_5	starts_in_intron	12482579	12482579	+	asmbl_44474	none	Trinity_GG_3508_c0_g1_i1,blat.proc3829873.chain_2588	2	STRG.6474.1	1
scaffold_25	alternate_exon	2956234	2956243	-	asmbl_34064	none	blat.proc3829901.chain_498	1	STRG.27220.1,blat.proc3829901.chain_499	2
scaffold_3	retained_intron	6659860	6660509	+	asmbl_40060	none	STRG.3290.3,Trinity_GG_1861_c0_g1_i1,Trinity_GG_1861_c0_g1_i4,blat.proc3829871.chain_3462,blat.proc3829871.chain_3463	5	blat.proc3829871.chain_3457	1
scaffold_6	alt_acceptor	3521042	3521043	+	asmbl_46792	none	STRG.7355.1	1	STRG.7355.2	1
scaffold_340	retained_intron	809	1024	+	asmbl_40962,asmbl_40963,asmbl_40964	none	STRG.30267.2,Trinity_GG_16763_c0_g1_i8,Trinity_GG_24043_c0_g1_i3,blat.proc3829885.chain_3309,blat.proc3829893.chain_1073,blat.proc3829893.chain_1074	6	STRG.30267.1	1
scaffold_27	alt_acceptor	1942459	1942460	+	asmbl_36001,asmbl_36002	none	STRG.28655.1,STRG.28655.2,blat.proc3829885.chain_1686,blat.proc3829885.chain_1688	4	STRG.28655.3	1
scaffold_8	retained_intron	17284211	17284287	-	asmbl_53448	none	blat.proc3829891.chain_2764	1	STRG.10643.1,blat.proc3829891.chain_2763	2
scaffold_7	starts_in_intron	5240145	5240145	+	asmbl_50683	none	Trinity_GG_4884_c2_g1_i1,blat.proc3829875.chain_1298	2	STRG.8853.1,STRG.8853.2,blat.proc3829875.chain_1292,blat.proc3829875.chain_1293,blat.proc3829875.chain_1294,blat.proc3829875.chain_1296	6
scaffold_7	retained_intron	6580953	6581051	-	asmbl_49734	none	STRG.8920.1,blat.proc3829891.chain_1239	2	STRG.8920.2	1
scaffold_16	alt_acceptor	3979608	3979609	-	asmbl_16196,asmbl_16197	none	STRG.19204.1,STRG.19204.3	2	STRG.19204.2,blat.proc3829897.chain_233,blat.proc3829897.chain_234	3
scaffold_23	alt_acceptor	1606078	1606079	+	asmbl_30655	none	blat.proc3829883.chain_2537	1	STRG.25619.1,blat.proc3829883.chain_2536,blat.proc3829883.chain_2538	3
scaffold_10	skipped_exon	7502183	7505111	+	asmbl_4560	none	blat.proc3829877.chain_1136	1	STRG.12537.1,blat.proc3829877.chain_1135	2
scaffold_14	alt_donor	6277029	6277030	-	asmbl_13100	none	blat.proc3829895.chain_1815	1	STRG.17065.1,STRG.17065.2,STRG.17065.3,STRG.17065.4,blat.proc3829895.chain_1814,blat.proc3829895.chain_1816,blat.proc3829895.chain_1817	7
scaffold_17	retained_intron	9007049	9007385	+	asmbl_18182	none	blat.proc3829881.chain_1318	1	STRG.20513.1,blat.proc3829881.chain_1321	2
scaffold_10	retained_intron	716590	716853	-	asmbl_2905,asmbl_2907,asmbl_2908	none	STRG.11948.2,Trinity_GG_23680_c0_g1_i4,Trinity_GG_23680_c0_g1_i6,blat.proc3829893.chain_435,blat.proc3829893.chain_436	5	STRG.11948.1,Trinity_GG_23680_c0_g1_i7,blat.proc3829893.chain_434,blat.proc3829893.chain_438	4
scaffold_1	alt_acceptor	6126767	6126768	-	asmbl_325	none	blat.proc3829887.chain_298	1	STRG.412.1,STRG.412.2,blat.proc3829887.chain_295	3
scaffold_4	alternate_exon	16872817	16872910	-	asmbl_41980,asmbl_41981	none	STRG.5279.3,STRG.5279.4	2	STRG.5279.2	1
scaffold_13	alt_donor	6968168	6968169	-	asmbl_9781	none	blat.proc3829895.chain_731	1	blat.proc3829895.chain_732	1
scaffold_14	alternate_exon	8216075	8217384	-	asmbl_13238	none	STRG.17218.3,blat.proc3829895.chain_1931	2	STRG.17218.1	1
scaffold_5	starts_in_intron	13028207	13028207	+	asmbl_44515	none	Trinity_GG_3546_c0_g1_i2,blat.proc3829873.chain_2646	2	STRG.6524.1,Trinity_GG_3546_c0_g1_i1,blat.proc3829873.chain_2645	3
scaffold_3	retained_intron	10304998	10305546	+	asmbl_40216	none	STRG.3466.2,Trinity_GG_1968_c0_g2_i3,Trinity_GG_1968_c3_g1_i1,blat.proc3829871.chain_3657,blat.proc3829871.chain_3660	5	STRG.3466.1,Trinity_GG_1968_c0_g2_i1,blat.proc3829871.chain_3656	3
scaffold_10	spliced_intron	9071539	9071698	+	asmbl_4638,asmbl_4642,asmbl_4643	none	STRG.12648.1,STRG.12648.2,STRG.12648.3,blat.proc3829877.chain_1225	4	Trinity_GG_6979_c1_g1_i1,blat.proc3829877.chain_1226	2
scaffold_24	retained_exon	7201371	7201439	+	asmbl_32384	none	STRG.26750.1	1	STRG.26750.2	1
scaffold_3	alt_acceptor	16442309	16442310	+	asmbl_40585,asmbl_40586	none	STRG.3919.2,STRG.3919.3	2	STRG.3919.1,blat.proc3829873.chain_305,blat.proc3829873.chain_306	3
scaffold_7	alternate_exon	4047198	4047530	-	asmbl_49661	none	STRG.8793.3,blat.proc3829891.chain_1137	2	STRG.8793.2	1
scaffold_13	starts_in_intron	903690	903690	-	asmbl_9337,asmbl_9338	none	STRG.15448.7,blat.proc3829895.chain_217	2	blat.proc3829895.chain_216	1
scaffold_4	retained_intron	7267306	7267957	+	asmbl_42815,asmbl_42820	none	STRG.4560.7,Trinity_GG_2542_c0_g1_i2,Trinity_GG_2542_c0_g1_i4,blat.proc3829873.chain_960,blat.proc3829873.chain_961	5	STRG.4560.4,STRG.4560.6,Trinity_GG_2542_c0_g1_i3,blat.proc3829873.chain_959	4
scaffold_17	alternate_exon	12199388	12200198	+	asmbl_18401	none	STRG.20743.5,Trinity_GG_11385_c2_g1_i1,blat.proc3829881.chain_1579	3	STRG.20743.2	1
scaffold_22	alt_acceptor	4583192	4583193	+	asmbl_29324	none	STRG.24876.1,blat.proc3829883.chain_1828	2	STRG.24876.2	1
scaffold_23	retained_intron	10978092	10978827	+	asmbl_31187,asmbl_31189,asmbl_31192,asmbl_31194,asmbl_31195,asmbl_31196	none	Trinity_GG_14524_c0_g1_i12,Trinity_GG_14524_c0_g1_i8,blat.proc3829883.chain_3192,blat.proc3829883.chain_3193,blat.proc3829883.chain_3197,blat.proc3829883.chain_3199,blat.proc3829883.chain_3200,blat.proc3829883.chain_3203	8	STRG.26281.1,STRG.26281.2,Trinity_GG_14524_c0_g1_i13,Trinity_GG_14524_c0_g1_i9,blat.proc3829883.chain_3194,blat.proc3829883.chain_3195,blat.proc3829883.chain_3201	7
scaffold_18	alt_donor	7223696	7223697	+	asmbl_20755	none	STRG.21439.1	1	STRG.21439.2,STRG.21439.3,blat.proc3829881.chain_2331	3
scaffold_21	starts_in_intron	2469839	2469839	-	asmbl_27483	none	blat.proc3829899.chain_903	1	STRG.23863.1,STRG.23863.2,STRG.23863.4,blat.proc3829899.chain_898,blat.proc3829899.chain_902,blat.proc3829899.chain_906	6
scaffold_23	alt_acceptor	7513092	7513093	-	asmbl_31751	none	STRG.26043.2,blat.proc3829899.chain_3151	2	STRG.26043.1	1
scaffold_14	alt_acceptor	2374520	2374521	-	asmbl_12916,asmbl_12922	none	STRG.16839.5,blat.proc3829895.chain_1581	2	blat.proc3829895.chain_1579	1
scaffold_21	starts_in_intron	8129917	8129917	-	asmbl_27913	none	blat.proc3829899.chain_1384	1	blat.proc3829899.chain_1382	1
scaffold_8	alternate_exon	11830363	11830719	+	asmbl_52260	none	Trinity_GG_5799_c0_g1_i1,blat.proc3829875.chain_2919	2	STRG.10379.1	1
scaffold_11	starts_in_intron	16652686	16652686	+	asmbl_6152	none	Trinity_GG_7906_c0_g1_i3,blat.proc3829877.chain_2840	2	STRG.14353.1,blat.proc3829877.chain_2838,blat.proc3829877.chain_2841,blat.proc3829877.chain_2842	4
scaffold_1	alt_acceptor	12450557	12450558	+	asmbl_2201,asmbl_2202,asmbl_2203,asmbl_2205	none	STRG.856.1,STRG.856.2,STRG.856.3,STRG.856.4,Trinity_GG_494_c0_g1_i1,Trinity_GG_494_c0_g1_i6,blat.proc3829871.chain_881,blat.proc3829871.chain_882,blat.proc3829871.chain_884	9	STRG.856.5,Trinity_GG_494_c0_g1_i3,blat.proc3829871.chain_887	3
scaffold_21	retained_intron	5138274	5138792	-	asmbl_27635,asmbl_27638	none	STRG.24046.1,STRG.24046.7	2	STRG.24046.4	1
scaffold_10	starts_in_intron	8777660	8777660	+	asmbl_4613	none	blat.proc3829877.chain_1186	1	STRG.12621.1	1
scaffold_18	ends_in_intron	6240169	6240169	-	asmbl_19926	none	Trinity_GG_28980_c2_g1_i1,blat.proc3829897.chain_2234	2	STRG.21345.2	1
scaffold_44	alt_donor	30863	30864	-	asmbl_43691	none	STRG.30027.3	1	STRG.30027.1,STRG.30027.2,blat.proc3829901.chain_3130	3
scaffold_26	retained_exon	5658452	5658472	-	asmbl_34885,asmbl_34889	none	STRG.28255.2,blat.proc3829901.chain_1438,blat.proc3829901.chain_1439,blat.proc3829901.chain_1443	4	STRG.28255.1,STRG.28255.3,blat.proc3829901.chain_1436,blat.proc3829901.chain_1441,blat.proc3829901.chain_1442	5
scaffold_28	starts_in_intron	7306292	7306292	-	asmbl_37720,asmbl_37722	none	STRG.29781.1,STRG.29781.2	2	STRG.29781.4	1
scaffold_10	alt_donor	5811415	5811416	+	asmbl_4482,asmbl_4484	none	STRG.12394.1,blat.proc3829877.chain_1034,blat.proc3829877.chain_1035	3	STRG.12394.2,STRG.12394.3,blat.proc3829877.chain_1036	3
scaffold_9	spliced_intron	16570389	16570696	+	asmbl_54572,asmbl_54579	none	STRG.11798.1,Trinity_GG_6586_c0_g1_i6,blat.proc3829877.chain_551,blat.proc3829877.chain_553	4	STRG.11798.2,Trinity_GG_6586_c0_g1_i10,Trinity_GG_6586_c0_g1_i14,Trinity_GG_6586_c0_g1_i15,Trinity_GG_6586_c0_g1_i21,Trinity_GG_6586_c0_g1_i23,Trinity_GG_6586_c0_g1_i5,blat.proc3829877.chain_552,blat.proc3829877.chain_554,blat.proc3829877.chain_555,blat.proc3829877.chain_556,blat.proc3829877.chain_557,blat.proc3829877.chain_558	13
scaffold_24	spliced_intron	8747030	8747465	+	asmbl_32446	none	STRG.26872.1,Trinity_GG_14810_c0_g1_i2,blat.proc3829883.chain_3681	3	STRG.26872.2,Trinity_GG_14810_c1_g1_i1,blat.proc3829883.chain_3683	3
scaffold_19	alt_acceptor	11466827	11466828	-	asmbl_21600	none	STRG.22465.1,blat.proc3829897.chain_3152	2	STRG.22465.2	1
scaffold_13	retained_intron	7507453	7507966	-	asmbl_9848,asmbl_9851	none	STRG.16034.2,blat.proc3829895.chain_813	2	STRG.16034.1,STRG.16034.5,Trinity_GG_26030_c0_g1_i10,Trinity_GG_26030_c0_g1_i9,blat.proc3829895.chain_816,blat.proc3829895.chain_820,blat.proc3829895.chain_822	7
scaffold_14	ends_in_intron	14322744	14322744	+	asmbl_12523	none	blat.proc3829879.chain_2337	1	STRG.17673.1,blat.proc3829879.chain_2338	2
scaffold_13	spliced_intron	7991437	7991929	-	asmbl_9885,asmbl_9891	none	STRG.16065.1,blat.proc3829895.chain_787,blat.proc3829895.chain_788	3	STRG.16065.2,STRG.16065.3,blat.proc3829895.chain_785,blat.proc3829895.chain_789	4
scaffold_21	starts_in_intron	2515872	2515872	+	asmbl_28420	none	STRG.23866.2	1	STRG.23866.1	1
scaffold_11	alt_donor	5716355	5716356	+	asmbl_5546	none	STRG.13626.1,Trinity_GG_7505_c0_g1_i1,blat.proc3829877.chain_2122	3	Trinity_GG_7505_c0_g1_i2,blat.proc3829877.chain_2121	2
scaffold_7	starts_in_intron	2502294	2502294	-	asmbl_49570	none	blat.proc3829891.chain_1016	1	STRG.8677.1,STRG.8677.2,blat.proc3829891.chain_1017	3
scaffold_3	spliced_intron	18733461	18733619	+	asmbl_40699	none	STRG.4058.1,blat.proc3829873.chain_444	2	blat.proc3829873.chain_445	1
scaffold_9	alternate_exon	9760387	9760435	+	asmbl_54234	none	STRG.11339.3	1	STRG.11339.2	1
scaffold_4	retained_intron	19354511	19354584	-	asmbl_42186,asmbl_42187,asmbl_42189	none	Trinity_GG_20122_c0_g1_i7,blat.proc3829889.chain_1609,blat.proc3829889.chain_1613,blat.proc3829889.chain_1616	4	STRG.5528.1,Trinity_GG_20122_c0_g1_i17,blat.proc3829889.chain_1612,blat.proc3829889.chain_1615,blat.proc3829889.chain_1617	5
scaffold_14	ends_in_intron	6671760	6671760	-	asmbl_13133	none	Trinity_GG_26606_c0_g1_i3,blat.proc3829895.chain_1797	2	STRG.17097.1,STRG.17097.2,blat.proc3829895.chain_1799,blat.proc3829895.chain_1800	4
scaffold_6	ends_in_intron	13126041	13126041	-	asmbl_48817	none	Trinity_GG_21592_c0_g1_i1,blat.proc3829891.chain_355	2	STRG.8062.1,STRG.8062.2,blat.proc3829891.chain_357,blat.proc3829891.chain_358	4
scaffold_28	spliced_intron	7438245	7438344	+	asmbl_38375	none	STRG.29801.1,blat.proc3829885.chain_2900	2	STRG.29801.2,blat.proc3829885.chain_2901	2
scaffold_10	ends_in_intron	4542147	4542147	-	asmbl_3215	none	blat.proc3829893.chain_727	1	STRG.12275.1,STRG.12275.2,blat.proc3829893.chain_729	3
scaffold_7	ends_in_intron	15599872	15599872	+	asmbl_51333	none	blat.proc3829875.chain_1996	1	blat.proc3829875.chain_1995,blat.proc3829875.chain_1997	2
scaffold_8	alt_donor	11270343	11270344	-	asmbl_53137	none	STRG.10329.1,blat.proc3829891.chain_2492	2	STRG.10329.2,blat.proc3829891.chain_2491	2
scaffold_7	ends_in_intron	12070008	12070008	+	asmbl_51093	none	blat.proc3829875.chain_1698	1	STRG.9302.1,blat.proc3829875.chain_1699	2
scaffold_2	spliced_intron	9791343	9791807	+	asmbl_24720,asmbl_24721,asmbl_24722,asmbl_24725,asmbl_24726	none	STRG.2185.1,Trinity_GG_1191_c0_g1_i6,blat.proc3829871.chain_2216,blat.proc3829871.chain_2217,blat.proc3829871.chain_2218,blat.proc3829871.chain_2221,blat.proc3829871.chain_2222	7	blat.proc3829871.chain_2219,blat.proc3829871.chain_2220	2
scaffold_15	alt_donor	4520327	4520328	-	asmbl_15155	none	STRG.18169.1	1	STRG.18169.2	1
scaffold_24	spliced_intron	1078656	1078823	+	asmbl_32076	none	STRG.26363.1,blat.proc3829883.chain_3300	2	STRG.26363.2,blat.proc3829883.chain_3302	2
scaffold_12	spliced_intron	4788054	4789011	-	asmbl_7582	none	STRG.14646.4,blat.proc3829893.chain_3025	2	STRG.14646.3,STRG.14646.6,Trinity_GG_25172_c1_g1_i1,blat.proc3829893.chain_3026	4
scaffold_2	alt_donor	17951804	17951805	-	asmbl_23777	none	STRG.2686.1,blat.proc3829887.chain_2526	2	STRG.2686.2	1
scaffold_2	alt_acceptor	168570	168571	+	asmbl_24098	none	STRG.1523.2	1	STRG.1523.1,blat.proc3829871.chain_1595,blat.proc3829871.chain_1597,blat.proc3829871.chain_1599	4
scaffold_9	starts_in_intron	14040900	14040900	+	asmbl_54500	none	Trinity_GG_6520_c0_g1_i1,blat.proc3829877.chain_437	2	STRG.11659.1,STRG.11659.2,Trinity_GG_6520_c0_g1_i3,Trinity_GG_6520_c0_g1_i4,blat.proc3829877.chain_436,blat.proc3829877.chain_438	6
scaffold_7	ends_in_intron	1402552	1402552	-	asmbl_49535	none	Trinity_GG_21916_c0_g1_i1,blat.proc3829891.chain_922	2	STRG.8638.1,blat.proc3829891.chain_921,blat.proc3829891.chain_926,blat.proc3829891.chain_927	4
scaffold_17	starts_in_intron	13973176	13973176	-	asmbl_19442	none	STRG.20876.3,blat.proc3829897.chain_1765	2	STRG.20876.1,STRG.20876.2,STRG.20876.4,blat.proc3829897.chain_1764,blat.proc3829897.chain_1766	5
scaffold_1	alt_acceptor	3270497	3270498	-	asmbl_144	none	STRG.199.2	1	STRG.199.1,blat.proc3829887.chain_97,blat.proc3829887.chain_99	3
scaffold_20	starts_in_intron	9498933	9498933	+	asmbl_26011	none	blat.proc3829883.chain_528	1	STRG.23474.1,STRG.23474.2,blat.proc3829883.chain_527,blat.proc3829883.chain_529	4
scaffold_16	spliced_intron	810150	810259	-	asmbl_16078,asmbl_16080,asmbl_16082	none	STRG.19052.2,STRG.19052.4,blat.proc3829895.chain_3747	3	blat.proc3829895.chain_3746,blat.proc3829895.chain_3748	2
scaffold_17	retained_exon	2355383	2355463	+	asmbl_17765,asmbl_17766,asmbl_17769	none	STRG.20017.1,STRG.20017.2,STRG.20017.4,blat.proc3829881.chain_852	4	STRG.20017.6,blat.proc3829881.chain_853	2
scaffold_14	alt_donor	6679279	6679280	+	asmbl_12077	none	STRG.17093.1,blat.proc3829879.chain_1844	2	blat.proc3829879.chain_1845,blat.proc3829879.chain_1846	2
scaffold_10	starts_in_intron	13781713	13781713	+	asmbl_4893	none	Trinity_GG_7140_c1_g1_i12,blat.proc3829877.chain_1522	2	STRG.12969.1,STRG.12969.2,STRG.12969.3	3
scaffold_17	alternate_exon	12394938	12395149	-	asmbl_19381	none	STRG.20756.1	1	STRG.20756.2	1
scaffold_14	alternate_exon	209954	210056	-	asmbl_12781	none	Trinity_GG_26362_c0_g1_i2,blat.proc3829895.chain_1402	2	STRG.16702.3,Trinity_GG_26362_c0_g1_i5,blat.proc3829895.chain_1405	3
scaffold_12	retained_intron	2965837	2965925	-	asmbl_7471	none	Trinity_GG_25099_c0_g1_i2,blat.proc3829893.chain_2891	2	STRG.14517.1,blat.proc3829893.chain_2892	2
scaffold_14	ends_in_intron	13216430	13216430	+	asmbl_12440	none	blat.proc3829879.chain_2268	1	STRG.17599.1,STRG.17599.2,STRG.17599.3,STRG.17599.4	4
scaffold_11	retained_exon	3497673	3498441	+	asmbl_5398,asmbl_5402	none	STRG.13472.2,blat.proc3829877.chain_1902	2	STRG.13472.4	1
scaffold_13	alt_acceptor	9535180	9535181	-	asmbl_9990,asmbl_9991,asmbl_9993,asmbl_9994	none	STRG.16202.1,STRG.16202.2,STRG.16202.4,STRG.16202.5,blat.proc3829895.chain_990,blat.proc3829895.chain_991	6	STRG.16202.3	1
scaffold_5	skipped_exon	6716069	6718508	+	asmbl_44107	none	STRG.6066.1,Trinity_GG_3283_c0_g1_i2,blat.proc3829873.chain_2161	3	STRG.6066.2,blat.proc3829873.chain_2162	2
scaffold_21	alt_donor	5490740	5490741	-	asmbl_27685	none	STRG.24065.1,blat.proc3829899.chain_1125,blat.proc3829899.chain_1126	3	STRG.24065.2	1
scaffold_28	starts_in_intron	7876552	7876552	-	asmbl_37758	none	blat.proc3829901.chain_2976	1	STRG.29846.1,blat.proc3829901.chain_2975,blat.proc3829901.chain_2977	3
scaffold_6	alternate_exon	14471773	14471956	-	asmbl_48944	none	STRG.8201.2,Trinity_GG_21657_c0_g1_i2,blat.proc3829891.chain_489	3	STRG.8201.3	1
scaffold_10	alternate_exon	11971546	11972133	+	asmbl_4783	none	STRG.12831.3,Trinity_GG_7032_c1_g1_i1,blat.proc3829877.chain_1324	3	Trinity_GG_7032_c0_g1_i9,blat.proc3829877.chain_1313,blat.proc3829877.chain_1317,blat.proc3829877.chain_1319,blat.proc3829877.chain_1322	5
scaffold_3	alt_acceptor	14764542	14764543	-	asmbl_39362,asmbl_39364	none	STRG.3818.2,STRG.3818.4,Trinity_GG_19114_c0_g1_i3,blat.proc3829887.chain_3601	4	STRG.3818.3,Trinity_GG_19114_c0_g1_i2,blat.proc3829887.chain_3599	3
scaffold_18	starts_in_intron	6000881	6000881	+	asmbl_20688	none	blat.proc3829881.chain_2197	1	STRG.21346.5,blat.proc3829881.chain_2196,blat.proc3829881.chain_2198	3
scaffold_26	retained_intron	5953595	5953639	-	asmbl_34926,asmbl_34927	none	STRG.28289.1,blat.proc3829901.chain_1471,blat.proc3829901.chain_1473	3	STRG.28289.2	1
scaffold_11	skipped_exon	8478295	8479288	+	asmbl_5745	none	STRG.13851.2,Trinity_GG_7647_c0_g1_i2,blat.proc3829877.chain_2360	3	STRG.13851.1,Trinity_GG_7647_c0_g1_i5,blat.proc3829877.chain_2362	3
scaffold_14	alt_acceptor	2464108	2464109	-	asmbl_12935	none	STRG.16842.4,blat.proc3829895.chain_1546	2	STRG.16842.1,STRG.16842.2,blat.proc3829895.chain_1549	3
scaffold_28	alt_acceptor	3391740	3391741	+	asmbl_38174,asmbl_38175	none	STRG.29537.1,STRG.29537.2	2	STRG.29537.3	1
scaffold_26	alternate_exon	5480963	5481074	+	asmbl_35522,asmbl_35523	none	STRG.28234.3,STRG.28234.4	2	STRG.28234.1,STRG.28234.2	2
scaffold_26	spliced_intron	9315311	9315414	+	asmbl_35739,asmbl_35741,asmbl_35746	none	STRG.28479.1,STRG.28479.2,STRG.28479.3,blat.proc3829885.chain_1519	4	blat.proc3829885.chain_1520	1
scaffold_13	alt_acceptor	8026569	8026570	-	asmbl_9895	none	STRG.16071.2	1	STRG.16071.1,blat.proc3829895.chain_853,blat.proc3829895.chain_854	3
scaffold_16	alt_donor	125643	125644	+	asmbl_16787	none	Trinity_GG_10419_c0_g1_i3,blat.proc3829879.chain_3620	2	Trinity_GG_10419_c0_g1_i5,blat.proc3829879.chain_3617	2
scaffold_19	starts_in_intron	1106991	1106991	-	asmbl_21234	none	Trinity_GG_29212_c0_g2_i1,blat.proc3829897.chain_2647	2	STRG.21887.1,STRG.21887.4	2
scaffold_9	alt_acceptor	5399983	5399984	+	asmbl_54022	none	STRG.11106.1	1	STRG.11106.2,blat.proc3829875.chain_3496	2
scaffold_24	ends_in_intron	6446031	6446031	+	asmbl_32318	none	STRG.26679.3,blat.proc3829883.chain_3601	2	STRG.26679.1,STRG.26679.2,blat.proc3829883.chain_3599,blat.proc3829883.chain_3600,blat.proc3829883.chain_3602,blat.proc3829883.chain_3603	6
scaffold_19	retained_intron	12686175	12686347	-	asmbl_21740	none	blat.proc3829897.chain_3329	1	STRG.22579.1,STRG.22579.2,blat.proc3829897.chain_3330,blat.proc3829897.chain_3331,blat.proc3829897.chain_3332	5
scaffold_21	retained_exon	691873	692016	+	asmbl_28304,asmbl_28305	none	STRG.23742.2,STRG.23742.3,Trinity_GG_13161_c0_g1_i1	3	STRG.23742.1,STRG.23742.4	2
scaffold_20	retained_exon	11613242	11613370	-	asmbl_27094,asmbl_27095	none	STRG.23657.1,blat.proc3829899.chain_696	2	STRG.23657.2,STRG.23657.3	2
scaffold_6	alternate_exon	11562233	11562290	+	asmbl_47287	none	STRG.7949.1,Trinity_GG_4346_c0_g1_i2,blat.proc3829875.chain_315	3	STRG.7950.1,Trinity_GG_4346_c1_g1_i1,blat.proc3829875.chain_316	3
scaffold_5	alternate_exon	16290204	16290247	+	asmbl_44739,asmbl_44740,asmbl_44741	none	STRG.6811.3,Trinity_GG_3725_c0_g1_i3,blat.proc3829873.chain_2944	3	blat.proc3829873.chain_2945	1
scaffold_1	retained_intron	19006450	19006518	+	asmbl_2560,asmbl_2562	none	STRG.1322.2,STRG.1322.4	2	STRG.1322.1	1
scaffold_9	alt_acceptor	11130889	11130890	+	asmbl_54321	none	STRG.11416.2	1	STRG.11416.1,Trinity_GG_6376_c0_g1_i1,blat.proc3829877.chain_216	3
scaffold_23	retained_intron	7281701	7281793	-	asmbl_31740	none	STRG.26034.1,blat.proc3829899.chain_3127	2	STRG.26034.3	1
scaffold_17	spliced_intron	8846095	8846264	+	asmbl_18150,asmbl_18153	none	STRG.20483.1,blat.proc3829881.chain_1284,blat.proc3829881.chain_1285	3	STRG.20483.2,Trinity_GG_11225_c0_g1_i6,blat.proc3829881.chain_1283	3
scaffold_10	spliced_intron	6467752	6468715	-	asmbl_3380,asmbl_3381,asmbl_3383,asmbl_3384	none	blat.proc3829893.chain_940,blat.proc3829893.chain_941,blat.proc3829893.chain_943,blat.proc3829893.chain_944	4	blat.proc3829893.chain_942,blat.proc3829893.chain_945	2
scaffold_13	alt_acceptor	6949076	6949077	-	asmbl_9777	none	STRG.15968.5	1	STRG.15968.2,STRG.15968.3,STRG.15968.4	3
scaffold_24	spliced_intron	3655919	3656169	+	asmbl_32166,asmbl_32167	none	STRG.26528.2,blat.proc3829883.chain_3402,blat.proc3829883.chain_3405	3	STRG.26528.5,Trinity_GG_14654_c0_g1_i1,blat.proc3829883.chain_3409	3
scaffold_17	skipped_exon	13087139	13087807	+	asmbl_18438	none	STRG.20800.1,blat.proc3829881.chain_1648	2	STRG.20800.2,blat.proc3829881.chain_1649,blat.proc3829881.chain_1650	3
scaffold_17	spliced_intron	8321556	8321624	+	asmbl_18102	none	STRG.20440.1,Trinity_GG_11199_c0_g1_i2,blat.proc3829881.chain_1228	3	Trinity_GG_11199_c0_g1_i1,blat.proc3829881.chain_1226	2
scaffold_2	retained_intron	7324282	7325889	+	asmbl_24596	none	STRG.2062.1,Trinity_GG_1176_c0_g1_i2,Trinity_GG_1176_c0_g1_i3,blat.proc3829871.chain_2161,blat.proc3829871.chain_2162	5	STRG.2062.2,Trinity_GG_1176_c0_g1_i4,blat.proc3829871.chain_2159	3
scaffold_6	starts_in_intron	11488509	11488509	+	asmbl_47272	none	blat.proc3829875.chain_303	1	STRG.7936.1,STRG.7936.2,STRG.7936.3,STRG.7936.4,blat.proc3829875.chain_299,blat.proc3829875.chain_300,blat.proc3829875.chain_301,blat.proc3829875.chain_302,blat.proc3829875.chain_304	9
scaffold_27	retained_intron	6782129	6782627	-	asmbl_37035	none	Trinity_GG_33279_c0_g1_i1,blat.proc3829901.chain_2192	2	STRG.29027.1,blat.proc3829901.chain_2191	2
scaffold_11	starts_in_intron	17375700	17375700	+	asmbl_6204	none	blat.proc3829877.chain_2827	1	STRG.14392.1,STRG.14392.2,blat.proc3829877.chain_2826	3
scaffold_16	spliced_intron	5445512	5445763	-	asmbl_16277	none	STRG.19289.2,Trinity_GG_27846_c0_g1_i1,blat.proc3829897.chain_327	3	STRG.19289.1,blat.proc3829897.chain_326	2
scaffold_14	alternate_exon	16056194	16058665	+	asmbl_12649	none	STRG.17834.1,Trinity_GG_9781_c0_g1_i2,Trinity_GG_9781_c0_g1_i3,blat.proc3829879.chain_2475,blat.proc3829879.chain_2476,blat.proc3829879.chain_2478	6	blat.proc3829879.chain_2477	1
scaffold_1	retained_exon	6284588	6284661	-	asmbl_343,asmbl_345,asmbl_347,asmbl_348,asmbl_350	none	STRG.425.1,STRG.425.3,STRG.425.6,Trinity_GG_17251_c0_g1_i12,blat.proc3829887.chain_325,blat.proc3829887.chain_328,blat.proc3829887.chain_335	7	STRG.425.2,STRG.425.4,blat.proc3829887.chain_333	3
scaffold_15	alternate_exon	11161539	11165646	+	asmbl_14428	none	STRG.18583.1	1	STRG.18583.2	1
scaffold_27	alternate_exon	5682566	5687604	+	asmbl_36314,asmbl_36315,asmbl_36316	none	STRG.28956.1,STRG.28956.2,STRG.28956.3,Trinity_GG_15988_c0_g1_i9,Trinity_GG_15988_c1_g1_i1,blat.proc3829885.chain_1994,blat.proc3829885.chain_1995,blat.proc3829885.chain_1997,blat.proc3829885.chain_1998,blat.proc3829885.chain_2000	10	STRG.28956.4,blat.proc3829885.chain_1999	2
scaffold_17	ends_in_intron	8845581	8845581	+	asmbl_18152	none	blat.proc3829881.chain_1282	1	STRG.20483.1,STRG.20483.2,blat.proc3829881.chain_1284,blat.proc3829881.chain_1285	4
scaffold_5	spliced_intron	3935983	3936174	-	asmbl_45321	none	STRG.5857.1	1	STRG.5856.2	1
scaffold_26	alt_donor	9843220	9843221	+	asmbl_35811,asmbl_35813,asmbl_35816	none	STRG.28526.2,blat.proc3829885.chain_1563,blat.proc3829885.chain_1565	3	blat.proc3829885.chain_1566	1
scaffold_8	skipped_exon	11101511	11102291	-	asmbl_53130	none	STRG.10313.2,blat.proc3829891.chain_2472	2	STRG.10313.1,STRG.10313.3,blat.proc3829891.chain_2471	3
scaffold_9	ends_in_intron	6423353	6423353	-	asmbl_55020	none	Trinity_GG_23162_c2_g2_i1,blat.proc3829891.chain_3249	2	STRG.11165.2	1
scaffold_4	retained_intron	16480998	16481101	-	asmbl_41928,asmbl_41930	none	STRG.5226.2,Trinity_GG_19942_c0_g2_i2,blat.proc3829889.chain_1293,blat.proc3829889.chain_1294	4	Trinity_GG_19942_c0_g2_i1,blat.proc3829889.chain_1290,blat.proc3829889.chain_1291	3
scaffold_15	retained_intron	4231266	4231387	+	asmbl_14069	none	Trinity_GG_9974_c0_g1_i8,blat.proc3829879.chain_2807	2	blat.proc3829879.chain_2811	1
scaffold_18	ends_in_intron	649530	649530	+	asmbl_20340	none	blat.proc3829881.chain_1789	1	STRG.20994.1,STRG.20994.2,Trinity_GG_11517_c0_g1_i1,Trinity_GG_11517_c0_g1_i3,Trinity_GG_11517_c0_g1_i4,blat.proc3829881.chain_1786,blat.proc3829881.chain_1787,blat.proc3829881.chain_1788	8
scaffold_3	alt_acceptor	16186887	16186888	+	asmbl_40572	none	STRG.3896.1,blat.proc3829873.chain_263	2	STRG.3896.2	1
scaffold_28	alt_acceptor	4130692	4130693	+	asmbl_38208,asmbl_38209	none	STRG.29584.2,STRG.29584.3	2	STRG.29584.1,blat.proc3829885.chain_2716	2
scaffold_22	starts_in_intron	2398364	2398364	+	asmbl_29233,asmbl_29237	none	STRG.24765.2,blat.proc3829883.chain_1744	2	STRG.24765.1,blat.proc3829883.chain_1745,blat.proc3829883.chain_1746	3
scaffold_5	retained_intron	10384008	10384137	-	asmbl_45735	none	STRG.6330.1	1	STRG.6330.2	1
scaffold_87	alt_donor	14483	14484	+	asmbl_53704	none	STRG.30139.6	1	STRG.30139.3,STRG.30139.5	2
scaffold_9	starts_in_intron	9990327	9990327	-	asmbl_55216	none	blat.proc3829891.chain_3459	1	STRG.11352.1,STRG.11352.2,blat.proc3829891.chain_3457,blat.proc3829891.chain_3458	4
scaffold_7	spliced_intron	15269933	15270764	+	asmbl_51308,asmbl_51311,asmbl_51312,asmbl_51313,asmbl_51314,asmbl_51315,asmbl_51316,asmbl_51318	none	STRG.9532.1,STRG.9532.2,STRG.9532.4,STRG.9532.5,blat.proc3829875.chain_1981,blat.proc3829875.chain_1984,blat.proc3829875.chain_1985,blat.proc3829875.chain_1986,blat.proc3829875.chain_1987	9	STRG.9532.3	1
scaffold_4	alt_donor	7090983	7090984	+	asmbl_42795	none	STRG.4545.2,blat.proc3829873.chain_945	2	STRG.4545.3,blat.proc3829873.chain_943	2
scaffold_11	skipped_exon	4672046	4673293	-	asmbl_6585,asmbl_6587,asmbl_6588,asmbl_6591,asmbl_6592	none	STRG.13547.2,STRG.13547.3,STRG.13547.5,blat.proc3829893.chain_1970,blat.proc3829893.chain_1971,blat.proc3829893.chain_1972	6	STRG.13547.1,STRG.13547.4,blat.proc3829893.chain_1973	3
scaffold_7	retained_intron	18615578	18615841	-	asmbl_50302	none	STRG.9671.1,blat.proc3829891.chain_1916	2	STRG.9671.2,blat.proc3829891.chain_1915	2
scaffold_16	alt_acceptor	5357608	5357609	-	asmbl_16261	none	STRG.19276.2	1	STRG.19276.1	1
scaffold_26	starts_in_intron	3623021	3623021	+	asmbl_35335	none	Trinity_GG_15465_c1_g1_i1	1	STRG.28026.2,blat.proc3829885.chain_998	2
scaffold_6	ends_in_intron	7172718	7172718	+	asmbl_46987	none	blat.proc3829873.chain_3741	1	STRG.7621.1,STRG.7621.2,STRG.7621.3,STRG.7621.4,blat.proc3829873.chain_3739	5
scaffold_1	alternate_exon	12489214	12489298	+	asmbl_2213	none	STRG.859.2,Trinity_GG_525_c0_g1_i2,blat.proc3829871.chain_944	3	STRG.859.1	1
scaffold_9	spliced_intron	12305963	12306075	+	asmbl_54409,asmbl_54411	none	STRG.11549.1,STRG.11549.2,blat.proc3829877.chain_330	3	blat.proc3829877.chain_331	1
scaffold_10	alt_donor	6413511	6413512	-	asmbl_3370	none	STRG.12460.1	1	blat.proc3829893.chain_850	1
scaffold_15	skipped_exon	7303308	7303635	+	asmbl_14231	none	STRG.18319.2,blat.proc3829879.chain_2937	2	STRG.18319.1,blat.proc3829879.chain_2936	2
scaffold_14	alternate_exon	14386295	14386977	+	asmbl_12530	none	STRG.17683.3,blat.proc3829879.chain_2303	2	STRG.17683.1	1
scaffold_16	retained_exon	5960302	5960382	+	asmbl_17044	none	STRG.19319.3	1	STRG.19319.2,blat.proc3829881.chain_166	2
scaffold_13	retained_exon	2972401	2972535	+	asmbl_10629	none	STRG.15582.1,blat.proc3829879.chain_300	2	STRG.15582.2,blat.proc3829879.chain_301	2
scaffold_15	retained_exon	5356434	5356448	-	asmbl_15210,asmbl_15211	none	STRG.18225.1,STRG.18225.2	2	STRG.18225.3	1
scaffold_16	retained_exon	440701	440745	-	asmbl_16043	none	STRG.19039.1	1	STRG.19039.4	1
scaffold_19	spliced_intron	11483966	11484174	-	asmbl_21614,asmbl_21615,asmbl_21619,asmbl_21621,asmbl_21623,asmbl_21624	none	STRG.22477.1,STRG.22477.3,blat.proc3829897.chain_3181,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184,blat.proc3829897.chain_3187,blat.proc3829897.chain_3192,blat.proc3829897.chain_3193	8	Trinity_GG_29530_c0_g1_i8,blat.proc3829897.chain_3186	2
scaffold_15	alt_acceptor	12114572	12114573	+	asmbl_14479,asmbl_14480	none	STRG.18659.1,blat.proc3829879.chain_3247,blat.proc3829879.chain_3249	3	STRG.18659.2	1
scaffold_4	alt_acceptor	16316018	16316019	+	asmbl_43299,asmbl_43301	none	STRG.5205.1,STRG.5205.3,blat.proc3829873.chain_1510	3	STRG.5205.4,Trinity_GG_2902_c0_g1_i6,blat.proc3829873.chain_1511,blat.proc3829873.chain_1514	4
scaffold_28	alt_acceptor	7255312	7255313	+	asmbl_38351,asmbl_38355	none	STRG.29771.1,STRG.29771.3,Trinity_GG_16499_c0_g1_i3,blat.proc3829885.chain_2880	4	STRG.29771.2,STRG.29771.4,Trinity_GG_16499_c0_g1_i1,blat.proc3829885.chain_2878	4
scaffold_4	alt_acceptor	4378469	4378470	-	asmbl_41246	none	STRG.4338.1,blat.proc3829889.chain_459	2	STRG.4338.2	1
scaffold_19	starts_in_intron	1481834	1481834	+	asmbl_22040	none	blat.proc3829881.chain_2865	1	STRG.21897.1,STRG.21897.2	2
scaffold_28	spliced_intron	9808981	9809004	+	asmbl_38506	none	STRG.29985.2	1	STRG.29985.1,Trinity_GG_16595_c0_g1_i1,blat.proc3829885.chain_3049	3
scaffold_500	skipped_exon	1334	1625	+	asmbl_46443,asmbl_46444,asmbl_46446,asmbl_46448,asmbl_46449,asmbl_46450	none	STRG.30347.1,STRG.30347.2,STRG.30347.3,STRG.30347.4,blat.proc3829885.chain_3366,blat.proc3829885.chain_3369	6	blat.proc3829885.chain_3365	1
scaffold_18	starts_in_intron	7682122	7682122	+	asmbl_20808,asmbl_20809	none	STRG.21464.2,STRG.21464.3	2	STRG.21464.1,blat.proc3829881.chain_2435,blat.proc3829881.chain_2436,blat.proc3829881.chain_2437,blat.proc3829881.chain_2440	5
scaffold_20	alt_acceptor	1754611	1754612	+	asmbl_25608	none	STRG.22907.4	1	STRG.22907.1,STRG.22907.2,STRG.22907.3,Trinity_GG_12636_c0_g1_i2,Trinity_GG_12636_c0_g1_i4,blat.proc3829883.chain_55,blat.proc3829883.chain_56,blat.proc3829883.chain_58	8
scaffold_7	alt_acceptor	17737583	17737584	+	asmbl_51375,asmbl_51377	none	STRG.9609.1,blat.proc3829875.chain_2072,blat.proc3829875.chain_2074	3	STRG.9609.2	1
scaffold_11	ends_in_intron	187910	187910	+	asmbl_5231	none	STRG.13236.1,blat.proc3829877.chain_1753	2	STRG.13236.2	1
scaffold_23	alt_acceptor	361677	361678	-	asmbl_31312,asmbl_31313,asmbl_31314,asmbl_31318	none	STRG.25543.4,STRG.25543.5,blat.proc3829899.chain_2652,blat.proc3829899.chain_2653	4	STRG.25543.1,STRG.25543.3,Trinity_GG_31299_c0_g1_i4,blat.proc3829899.chain_2649,blat.proc3829899.chain_2650,blat.proc3829899.chain_2654,blat.proc3829899.chain_2655,blat.proc3829899.chain_2656	8
scaffold_20	starts_in_intron	1470370	1470370	-	asmbl_26509	none	blat.proc3829897.chain_3661	1	STRG.22854.1,STRG.22854.2,STRG.22854.3,blat.proc3829897.chain_3656,blat.proc3829897.chain_3657,blat.proc3829897.chain_3658,blat.proc3829897.chain_3659,blat.proc3829897.chain_3660	8
scaffold_20	retained_intron	1490355	1490426	+	asmbl_25570	none	Trinity_GG_12610_c1_g1_i3,Trinity_GG_12610_c1_g1_i4,blat.proc3829883.chain_15,blat.proc3829883.chain_16,blat.proc3829883.chain_17	5	STRG.22855.1,STRG.22855.3,STRG.22855.5	3
scaffold_15	starts_in_intron	2424000	2424000	-	asmbl_15008	none	blat.proc3829895.chain_2712	1	STRG.18006.2,blat.proc3829895.chain_2709	2
scaffold_6	starts_in_intron	18719540	18719540	-	asmbl_49203	none	STRG.8533.2	1	STRG.8533.1	1
scaffold_1	alternate_exon	14365199	14365238	-	asmbl_915	none	STRG.1033.3	1	STRG.1033.1,blat.proc3829887.chain_885,blat.proc3829887.chain_887	3
scaffold_3	starts_in_intron	6050043	6050043	-	asmbl_38837,asmbl_38839	none	STRG.3255.7,Trinity_GG_18777_c0_g1_i1,blat.proc3829887.chain_2985	3	STRG.3255.1,STRG.3255.2,STRG.3255.5,blat.proc3829887.chain_2986	4
scaffold_6	skipped_exon	13132632	13134965	-	asmbl_48819	none	STRG.8063.2,Trinity_GG_21591_c0_g1_i2,blat.proc3829891.chain_353	3	STRG.8063.1,blat.proc3829891.chain_352	2
scaffold_18	retained_intron	372033	372122	-	asmbl_19618	none	blat.proc3829897.chain_1878	1	STRG.20979.1,blat.proc3829897.chain_1875,blat.proc3829897.chain_1876,blat.proc3829897.chain_1879	4
scaffold_1	spliced_intron	14305214	14305639	+	asmbl_2354	none	STRG.1018.1,blat.proc3829871.chain_1134	2	blat.proc3829871.chain_1135	1
scaffold_2	spliced_intron	14562180	14562666	+	asmbl_24982,asmbl_24983,asmbl_24986,asmbl_24989	none	STRG.2454.1,STRG.2454.2,STRG.2454.4,STRG.2454.5	4	STRG.2454.3	1
scaffold_6	alt_acceptor	17884061	17884062	-	asmbl_49145,asmbl_49151	none	STRG.8474.1,STRG.8474.3,Trinity_GG_21830_c0_g1_i2,blat.proc3829891.chain_767	4	STRG.8474.4	1
scaffold_5	retained_intron	15043048	15043268	-	asmbl_46014,asmbl_46016,asmbl_46020	none	STRG.6692.6,STRG.6692.8,STRG.6692.9,blat.proc3829889.chain_2740	4	STRG.6692.7,blat.proc3829889.chain_2738	2
scaffold_1	starts_in_intron	6830906	6830906	-	asmbl_395	none	blat.proc3829887.chain_367	1	STRG.478.3	1
scaffold_18	spliced_intron	3105935	3106050	-	asmbl_19785	none	STRG.21138.2	1	STRG.21138.1,Trinity_GG_28860_c0_g1_i2,blat.proc3829897.chain_2041	3
scaffold_11	spliced_intron	8723372	8723845	+	asmbl_5793,asmbl_5794	none	STRG.13889.1,STRG.13889.2,Trinity_GG_7670_c0_g1_i2,blat.proc3829877.chain_2404	4	STRG.13889.3,STRG.13889.4,Trinity_GG_7670_c0_g1_i3,Trinity_GG_7670_c0_g1_i5,blat.proc3829877.chain_2402,blat.proc3829877.chain_2403	6
scaffold_12	starts_in_intron	12297210	12297210	-	asmbl_7996	none	Trinity_GG_25452_c0_g1_i1	1	STRG.15113.1	1
scaffold_21	retained_intron	3726877	3726965	-	asmbl_27559	none	STRG.23948.3	1	STRG.23948.1,STRG.23948.2,blat.proc3829899.chain_1020,blat.proc3829899.chain_1021,blat.proc3829899.chain_1022	5
scaffold_4	spliced_intron	19128360	19128385	+	asmbl_43468	none	STRG.5494.2,blat.proc3829873.chain_1704	2	STRG.5494.1	1
scaffold_7	skipped_exon	8173018	8175492	+	asmbl_50845	none	STRG.9039.2,blat.proc3829875.chain_1471	2	STRG.9039.1,blat.proc3829875.chain_1470	2
scaffold_4	alt_acceptor	5651119	5651120	-	asmbl_41354,asmbl_41364	none	STRG.4469.3,blat.proc3829889.chain_607	2	blat.proc3829889.chain_605,blat.proc3829889.chain_610,blat.proc3829889.chain_613	3
scaffold_11	spliced_intron	3300926	3300997	-	asmbl_6525	none	STRG.13450.1,blat.proc3829893.chain_1902	2	blat.proc3829893.chain_1901	1
scaffold_1	ends_in_intron	17918530	17918530	+	asmbl_2523	none	Trinity_GG_745_c0_g1_i4,blat.proc3829871.chain_1317	2	STRG.1258.2,STRG.1258.3	2
scaffold_22	retained_exon	9720834	9721268	+	asmbl_29599	none	STRG.25292.1,blat.proc3829883.chain_2231	2	STRG.25292.4	1
scaffold_10	alt_acceptor	11970326	11970327	+	asmbl_4792	none	blat.proc3829877.chain_1319	1	blat.proc3829877.chain_1322	1
scaffold_11	retained_intron	8103129	8103233	+	asmbl_5695	none	Trinity_GG_7614_c1_g1_i5,blat.proc3829877.chain_2302	2	STRG.13811.1,STRG.13811.2,STRG.13811.3,blat.proc3829877.chain_2300,blat.proc3829877.chain_2301,blat.proc3829877.chain_2303	6
scaffold_1	alt_donor	5728876	5728877	+	asmbl_1757	none	STRG.378.2,blat.proc3829871.chain_428	2	STRG.378.1,blat.proc3829871.chain_427	2
scaffold_10	starts_in_intron	1021103	1021103	-	asmbl_2954	none	Trinity_GG_23647_c0_g1_i3,blat.proc3829893.chain_370	2	STRG.11978.1,Trinity_GG_23647_c0_g1_i1,blat.proc3829893.chain_369	3
scaffold_10	skipped_exon	5750331	5751625	-	asmbl_3297	none	STRG.12399.2,blat.proc3829893.chain_836	2	STRG.12399.1,blat.proc3829893.chain_837,blat.proc3829893.chain_840	3
scaffold_20	spliced_intron	5923146	5923230	-	asmbl_26708,asmbl_26709,asmbl_26710	none	STRG.23184.1,STRG.23184.2,STRG.23184.3,blat.proc3829899.chain_147,blat.proc3829899.chain_148,blat.proc3829899.chain_149	6	STRG.23184.4,blat.proc3829899.chain_144,blat.proc3829899.chain_145,blat.proc3829899.chain_150	4
scaffold_26	retained_intron	9772322	9772792	+	asmbl_35777,asmbl_35778,asmbl_35780,asmbl_35781	none	STRG.28501.2,STRG.28501.3,STRG.28501.4,STRG.28501.9,Trinity_GG_15718_c0_g2_i1,blat.proc3829885.chain_1433,blat.proc3829885.chain_1436,blat.proc3829885.chain_1438	8	STRG.28501.10,STRG.28501.5,blat.proc3829885.chain_1434	3
scaffold_13	alt_donor	7198064	7198065	-	asmbl_9819	none	STRG.16001.3,blat.proc3829895.chain_843	2	STRG.16001.1,blat.proc3829895.chain_839,blat.proc3829895.chain_842	3
scaffold_8	retained_intron	5433842	5433940	+	asmbl_51873	none	blat.proc3829875.chain_2416	1	STRG.9965.1,STRG.9965.2,blat.proc3829875.chain_2414,blat.proc3829875.chain_2415	4
scaffold_13	alt_acceptor	6137467	6137468	-	asmbl_9734	none	STRG.15904.2	1	STRG.15904.1,Trinity_GG_25956_c0_g1_i3,blat.proc3829895.chain_671	3
scaffold_14	retained_intron	12154408	12154530	+	asmbl_12399	none	blat.proc3829879.chain_2231	1	STRG.17532.1,blat.proc3829879.chain_2229	2
scaffold_3	ends_in_intron	5046427	5046427	+	asmbl_40021	none	blat.proc3829871.chain_3358	1	STRG.3198.1,blat.proc3829871.chain_3357	2
scaffold_15	skipped_exon	10878095	10880861	-	asmbl_15479	none	STRG.18561.2,blat.proc3829895.chain_3299	2	STRG.18561.1,blat.proc3829895.chain_3298	2
scaffold_7	retained_intron	3957526	3957770	-	asmbl_49652	none	Trinity_GG_21990_c1_g1_i1,blat.proc3829891.chain_1078	2	STRG.8779.1,blat.proc3829891.chain_1076,blat.proc3829891.chain_1077	3
scaffold_3	spliced_intron	10756336	10756429	+	asmbl_40246	none	STRG.3507.1,blat.proc3829871.chain_3670	2	STRG.3507.2,blat.proc3829871.chain_3669,blat.proc3829871.chain_3671	3
scaffold_14	alt_donor	9272678	9272679	-	asmbl_13347	none	blat.proc3829895.chain_1994	1	STRG.17323.3	1
scaffold_24	ends_in_intron	6800803	6800803	-	asmbl_32972	none	Trinity_GG_31940_c0_g1_i3,blat.proc3829901.chain_13	2	STRG.26711.1,STRG.26711.2,STRG.26711.3,blat.proc3829901.chain_12,blat.proc3829901.chain_14,blat.proc3829901.chain_15	6
scaffold_8	alt_acceptor	15163970	15163971	-	asmbl_53331	none	STRG.10539.1,blat.proc3829891.chain_2701	2	blat.proc3829891.chain_2702	1
scaffold_12	retained_intron	10187905	10188527	-	asmbl_7863,asmbl_7864	none	STRG.14979.3,blat.proc3829893.chain_3402	2	STRG.14979.4,STRG.14979.5,STRG.14979.6,blat.proc3829893.chain_3400	4
scaffold_18	retained_intron	1382022	1382102	-	asmbl_19649	none	blat.proc3829897.chain_1923	1	STRG.21013.1,STRG.21013.2,blat.proc3829897.chain_1921,blat.proc3829897.chain_1922	4
scaffold_7	starts_in_intron	1692886	1692886	+	asmbl_50500	none	Trinity_GG_4748_c0_g1_i1,blat.proc3829875.chain_1071	2	STRG.8642.1,Trinity_GG_4748_c0_g1_i2,blat.proc3829875.chain_1072	3
scaffold_10	ends_in_intron	1418852	1418852	+	asmbl_4209	none	STRG.12003.1,blat.proc3829877.chain_719	2	STRG.12003.2	1
scaffold_2	spliced_intron	16413485	16413596	-	asmbl_23702,asmbl_23704,asmbl_23705,asmbl_23706	none	STRG.2585.1,STRG.2585.2,blat.proc3829887.chain_2410,blat.proc3829887.chain_2412,blat.proc3829887.chain_2413	5	blat.proc3829887.chain_2409	1
scaffold_22	spliced_intron	11544027	11544174	+	asmbl_29695	none	STRG.25485.1	1	STRG.25485.2	1
scaffold_13	alt_donor	15510982	15510983	+	asmbl_11494	none	STRG.16580.4	1	STRG.16580.3	1
scaffold_10	spliced_intron	13789012	13789048	+	asmbl_4891	none	STRG.12969.4	1	STRG.12969.1	1
scaffold_20	ends_in_intron	1951603	1951603	-	asmbl_26549	none	Trinity_GG_29801_c0_g1_i1,blat.proc3829897.chain_3697	2	STRG.22923.1	1
scaffold_18	spliced_intron	11950782	11950808	+	asmbl_20979	none	STRG.21701.2	1	Trinity_GG_11964_c0_g1_i2,Trinity_GG_11964_c0_g1_i4	2
scaffold_19	ends_in_intron	10823958	10823958	-	asmbl_21560	none	STRG.22409.1,Trinity_GG_29471_c0_g1_i1,blat.proc3829897.chain_3075	3	blat.proc3829897.chain_3076	1
scaffold_17	retained_intron	7965060	7965092	-	asmbl_19106,asmbl_19107	none	STRG.20404.1,STRG.20404.2,blat.proc3829897.chain_1396	3	STRG.20404.3	1
scaffold_19	retained_intron	10821455	10821556	+	asmbl_22467	none	blat.proc3829881.chain_3324	1	STRG.22410.1,STRG.22410.2,Trinity_GG_12375_c0_g1_i3,blat.proc3829881.chain_3323	4
scaffold_24	retained_intron	4294010	4294192	+	asmbl_32195	none	blat.proc3829883.chain_3473	1	STRG.26571.1,blat.proc3829883.chain_3474	2
scaffold_21	spliced_intron	2441436	2441601	+	asmbl_28412	none	STRG.23854.1	1	Trinity_GG_13215_c0_g1_i1,blat.proc3829883.chain_997	2
scaffold_26	alternate_exon	7485966	7487923	+	asmbl_35643	none	STRG.28365.2,blat.proc3829885.chain_1383	2	STRG.28365.4,Trinity_GG_15686_c0_g2_i1,blat.proc3829885.chain_1382	3
scaffold_20	alt_acceptor	7103318	7103319	-	asmbl_26798	none	STRG.23268.2,blat.proc3829899.chain_228	2	STRG.23268.3,Trinity_GG_29954_c0_g2_i1,blat.proc3829899.chain_226,blat.proc3829899.chain_229	4
scaffold_9	retained_intron	11837109	11837256	-	asmbl_55288	none	STRG.11489.3,blat.proc3829891.chain_3605	2	STRG.11489.1,STRG.11489.2,blat.proc3829891.chain_3600,blat.proc3829891.chain_3601,blat.proc3829891.chain_3602,blat.proc3829891.chain_3603,blat.proc3829891.chain_3604	7
scaffold_16	alt_donor	8502371	8502372	+	asmbl_17194	none	STRG.19465.1	1	STRG.19465.2	1
scaffold_13	alternate_exon	2335811	2362694	+	asmbl_10576,asmbl_10588,asmbl_10590	none	STRG.15543.3,STRG.15543.6,STRG.15543.7	3	STRG.15543.2,STRG.15543.5,STRG.15543.8,Trinity_GG_8511_c1_g1_i3,blat.proc3829879.chain_166,blat.proc3829879.chain_174,blat.proc3829879.chain_175	7
scaffold_13	starts_in_intron	4076589	4076589	+	asmbl_10737	none	Trinity_GG_8643_c0_g1_i4,blat.proc3829879.chain_419	2	STRG.15714.1,STRG.15714.2,STRG.15714.3,blat.proc3829879.chain_416,blat.proc3829879.chain_417,blat.proc3829879.chain_418	6
scaffold_8	starts_in_intron	11830363	11830363	+	asmbl_52260	none	Trinity_GG_5799_c0_g1_i1,blat.proc3829875.chain_2919	2	STRG.10379.2,blat.proc3829875.chain_2918	2
scaffold_2	spliced_intron	4018804	4018989	-	asmbl_23066	none	STRG.1843.2	1	blat.proc3829887.chain_1707	1
scaffold_2	alt_donor	6534324	6534325	+	asmbl_24507	none	STRG.2017.1,Trinity_GG_1130_c0_g1_i3,blat.proc3829871.chain_2061	3	STRG.2017.2,Trinity_GG_1130_c0_g1_i2,blat.proc3829871.chain_2062	3
scaffold_15	alt_acceptor	14742828	14742829	-	asmbl_15759	none	STRG.18879.1,blat.proc3829895.chain_3657	2	STRG.18879.2,blat.proc3829895.chain_3658	2
scaffold_14	retained_intron	4699179	4699324	-	asmbl_13044	none	STRG.16989.1,Trinity_GG_26545_c0_g1_i1,blat.proc3829895.chain_1698	3	STRG.16989.2	1
scaffold_17	retained_intron	8640140	8640241	-	asmbl_19156	none	blat.proc3829897.chain_1360	1	STRG.20469.1,blat.proc3829897.chain_1359	2
scaffold_13	starts_in_intron	393989	393989	-	asmbl_9306	none	Trinity_GG_25691_c0_g1_i27,blat.proc3829895.chain_227	2	STRG.15428.1,STRG.15428.2,STRG.15428.3,Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i25,Trinity_GG_25691_c0_g1_i7,Trinity_GG_25691_c0_g1_i8,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_221,blat.proc3829895.chain_223,blat.proc3829895.chain_224,blat.proc3829895.chain_226,blat.proc3829895.chain_229,blat.proc3829895.chain_230,blat.proc3829895.chain_232,blat.proc3829895.chain_233	19
scaffold_27	alt_acceptor	6907779	6907780	+	asmbl_36371	none	STRG.29033.1,blat.proc3829885.chain_2166	2	STRG.29033.2	1
scaffold_7	alt_donor	3815233	3815234	+	asmbl_50579	none	STRG.8764.1,blat.proc3829875.chain_1125	2	Trinity_GG_4785_c0_g1_i2,blat.proc3829875.chain_1124	2
scaffold_5	retained_exon	13660978	13661026	-	asmbl_45924	none	STRG.6576.1,blat.proc3829889.chain_2645	2	STRG.6576.2,blat.proc3829889.chain_2644,blat.proc3829889.chain_2647	3
scaffold_17	alt_donor	936340	936341	+	asmbl_17708	none	STRG.19921.3	1	STRG.19921.1,STRG.19921.2,blat.proc3829881.chain_772,blat.proc3829881.chain_773	4
scaffold_24	spliced_intron	9116511	9116764	+	asmbl_32512,asmbl_32513	none	STRG.26927.1,blat.proc3829885.chain_104,blat.proc3829885.chain_97	3	blat.proc3829885.chain_101,blat.proc3829885.chain_102,blat.proc3829885.chain_98	3
scaffold_16	skipped_exon	10976248	10977481	-	asmbl_16500	none	blat.proc3829897.chain_538	1	STRG.19633.1,STRG.19633.2,blat.proc3829897.chain_540	3
scaffold_28	ends_in_intron	8343879	8343879	-	asmbl_37789	none	Trinity_GG_33764_c1_g1_i1	1	STRG.29880.1	1
scaffold_1	spliced_intron	5207308	5207851	+	asmbl_1703	none	STRG.323.3	1	blat.proc3829871.chain_393,blat.proc3829871.chain_395	2
scaffold_4	starts_in_intron	18996089	18996089	+	asmbl_43463	none	Trinity_GG_3017_c0_g1_i3	1	STRG.5475.1	1
scaffold_28	starts_in_intron	2302467	2302467	-	asmbl_37360	none	blat.proc3829901.chain_2485	1	STRG.29384.1,STRG.29384.2	2
scaffold_6	retained_intron	8172579	8172828	-	asmbl_48471,asmbl_48472,asmbl_48473	none	Trinity_GG_21366_c0_g1_i13,Trinity_GG_21366_c0_g1_i6,blat.proc3829889.chain_3718,blat.proc3829889.chain_3720,blat.proc3829889.chain_3721,blat.proc3829889.chain_3723	6	STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3715,blat.proc3829889.chain_3716,blat.proc3829889.chain_3724	5
scaffold_2	retained_intron	5391853	5391989	-	asmbl_23174	none	blat.proc3829887.chain_1756	1	STRG.1948.1,blat.proc3829887.chain_1757	2
scaffold_7	alternate_exon	8506662	8510800	+	asmbl_50889	none	blat.proc3829875.chain_1526	1	STRG.9068.3	1
scaffold_22	alternate_exon	9039981	9040064	-	asmbl_30275	none	STRG.25221.2,Trinity_GG_31117_c0_g1_i1,blat.proc3829899.chain_2313	3	STRG.25221.1	1
scaffold_16	starts_in_intron	151525	151525	-	asmbl_16004	none	blat.proc3829897.chain_72	1	STRG.19000.1,Trinity_GG_27691_c0_g1_i3,Trinity_GG_27691_c0_g1_i4,Trinity_GG_27691_c0_g1_i7,Trinity_GG_27691_c0_g1_i8,blat.proc3829897.chain_66,blat.proc3829897.chain_69	7
scaffold_13	ends_in_intron	13235006	13235006	+	asmbl_11354	none	blat.proc3829879.chain_1163	1	STRG.16383.1,blat.proc3829879.chain_1162	2
scaffold_10	ends_in_intron	380877	380877	-	asmbl_2869	none	Trinity_GG_23607_c0_g1_i4,blat.proc3829893.chain_305	2	STRG.11913.1,STRG.11913.2,STRG.11913.3,STRG.11913.4,Trinity_GG_23607_c0_g1_i1,Trinity_GG_23607_c0_g1_i5,blat.proc3829893.chain_302,blat.proc3829893.chain_304,blat.proc3829893.chain_306	9
scaffold_2	alt_acceptor	20309979	20309980	+	asmbl_25354	none	STRG.2874.3	1	STRG.2874.1,blat.proc3829871.chain_3044	2
scaffold_10	alternate_exon	11968016	11968161	+	asmbl_4784	none	STRG.12831.2,Trinity_GG_7032_c0_g1_i16,blat.proc3829877.chain_1316	3	STRG.12831.1,STRG.12831.3,Trinity_GG_7032_c0_g1_i14,blat.proc3829877.chain_1317,blat.proc3829877.chain_1319,blat.proc3829877.chain_1320,blat.proc3829877.chain_1321,blat.proc3829877.chain_1322	8
scaffold_13	retained_intron	6950776	6951096	-	asmbl_9775	none	STRG.15968.1,Trinity_GG_25972_c0_g1_i5	2	STRG.15968.4	1
scaffold_20	ends_in_intron	10383915	10383915	+	asmbl_26110	none	Trinity_GG_12979_c1_g1_i1,blat.proc3829883.chain_595	2	STRG.23569.2,STRG.23569.3,STRG.23569.5,Trinity_GG_12979_c0_g1_i2,blat.proc3829883.chain_594	5
scaffold_22	alternate_exon	6950926	6951000	+	asmbl_29433	none	STRG.24997.2,blat.proc3829883.chain_2063	2	STRG.24997.1,blat.proc3829883.chain_2062	2
scaffold_16	ends_in_intron	8070783	8070783	-	asmbl_16402	none	Trinity_GG_27939_c0_g1_i2,blat.proc3829897.chain_495	2	STRG.19439.1,Trinity_GG_27939_c0_g1_i1	2
scaffold_2	starts_in_intron	498258	498258	-	asmbl_22837	none	blat.proc3829887.chain_1408	1	STRG.1526.1,blat.proc3829887.chain_1409	2
scaffold_17	starts_in_intron	8845709	8845709	+	asmbl_18151	none	Trinity_GG_11225_c0_g1_i6,blat.proc3829881.chain_1283	2	STRG.20483.1,STRG.20483.2,blat.proc3829881.chain_1284,blat.proc3829881.chain_1285	4
scaffold_16	alt_donor	14663229	14663230	-	asmbl_16676	none	STRG.19849.2	1	STRG.19849.1,blat.proc3829897.chain_809	2
scaffold_7	retained_intron	8279661	8279764	+	asmbl_50866	none	blat.proc3829875.chain_1511	1	STRG.9053.1,blat.proc3829875.chain_1512,blat.proc3829875.chain_1513	3
scaffold_6	retained_intron	12991556	12992335	-	asmbl_48793,asmbl_48795	none	STRG.8061.2,blat.proc3829891.chain_262,blat.proc3829891.chain_263,blat.proc3829891.chain_271	4	STRG.8061.1,blat.proc3829891.chain_260,blat.proc3829891.chain_272	3
scaffold_6	alt_acceptor	8172800	8172801	-	asmbl_48474	none	Trinity_GG_21366_c0_g1_i3,blat.proc3829889.chain_3717	2	STRG.7691.1,blat.proc3829889.chain_3719	2
scaffold_10	spliced_intron	207548	207639	-	asmbl_2839,asmbl_2842,asmbl_2843	none	STRG.11904.1,STRG.11904.2,blat.proc3829893.chain_336,blat.proc3829893.chain_337	4	blat.proc3829893.chain_335	1
scaffold_12	alt_donor	15265766	15265767	-	asmbl_8202	none	STRG.15320.4	1	STRG.15320.1,STRG.15320.2,STRG.15320.3,STRG.15320.5,Trinity_GG_25603_c0_g1_i1,Trinity_GG_25603_c0_g1_i3,blat.proc3829895.chain_52,blat.proc3829895.chain_53,blat.proc3829895.chain_54	9
scaffold_20	alt_acceptor	1875965	1875966	-	asmbl_26543	none	blat.proc3829883.chain_53	1	STRG.22909.1	1
scaffold_20	alt_acceptor	4478060	4478061	-	asmbl_26654,asmbl_26656,asmbl_26661,asmbl_26662	none	STRG.23113.2,STRG.23113.3,blat.proc3829899.chain_55,blat.proc3829899.chain_58	4	STRG.23113.1,blat.proc3829899.chain_56,blat.proc3829899.chain_59	3
scaffold_8	retained_intron	16040457	16040586	-	asmbl_53357	none	STRG.10578.3	1	STRG.10578.1,blat.proc3829891.chain_2728	2
scaffold_5	spliced_intron	14261932	14262394	+	asmbl_44582	none	blat.proc3829873.chain_2765	1	STRG.6629.3,Trinity_GG_3625_c0_g1_i7,blat.proc3829873.chain_2762,blat.proc3829873.chain_2766	4
scaffold_2	retained_intron	16404516	16404596	+	asmbl_25170	none	STRG.2580.2,Trinity_GG_1466_c0_g1_i1,blat.proc3829871.chain_2792	3	STRG.2580.1,blat.proc3829871.chain_2790,blat.proc3829871.chain_2791	3
scaffold_11	spliced_intron	11785553	11785678	+	asmbl_5964,asmbl_5965	none	STRG.14087.4,STRG.14087.5	2	STRG.14087.1	1
scaffold_13	alt_acceptor	3593989	3593990	+	asmbl_10698	none	STRG.15662.2,Trinity_GG_8585_c0_g1_i3,blat.proc3829879.chain_316	3	STRG.15662.1,Trinity_GG_8585_c0_g1_i1,blat.proc3829879.chain_317	3
scaffold_2	retained_intron	2324086	2324113	-	asmbl_22915	none	STRG.1680.1	1	STRG.1680.2	1
scaffold_23	alt_donor	6923923	6923924	-	asmbl_31714	none	STRG.25999.2,blat.proc3829899.chain_3050	2	STRG.25999.1,blat.proc3829899.chain_3051	2
scaffold_4	retained_intron	4371150	4371554	+	asmbl_42568	none	blat.proc3829873.chain_724	1	STRG.4336.1,blat.proc3829873.chain_723	2
scaffold_13	spliced_intron	220491	221239	+	asmbl_10431	none	STRG.15414.1,blat.proc3829879.chain_100	2	blat.proc3829879.chain_98,blat.proc3829879.chain_99	2
scaffold_4	alt_acceptor	17580978	17580979	+	asmbl_43402	none	STRG.5347.2	1	STRG.5347.5	1
scaffold_5	retained_exon	236928	237501	-	asmbl_45154	none	STRG.5594.2	1	STRG.5594.3	1
scaffold_7	alt_acceptor	18619279	18619280	-	asmbl_50306	none	STRG.9671.2	1	STRG.9671.1,Trinity_GG_22452_c0_g1_i4,blat.proc3829891.chain_1915,blat.proc3829891.chain_1916,blat.proc3829891.chain_1917,blat.proc3829891.chain_1918	6
scaffold_4	alt_acceptor	13113232	13113233	-	asmbl_41715,asmbl_41716,asmbl_41717,asmbl_41718	none	STRG.4951.1,STRG.4951.2,STRG.4951.4,blat.proc3829889.chain_1007,blat.proc3829889.chain_1008,blat.proc3829889.chain_1009	6	STRG.4951.3	1
scaffold_28	skipped_exon	1434222	1435417	-	asmbl_37312	none	STRG.29325.1,blat.proc3829901.chain_2398	2	STRG.29325.2,STRG.29325.3,blat.proc3829901.chain_2399	3
scaffold_11	alt_acceptor	1572064	1572065	+	asmbl_5294	none	blat.proc3829893.chain_1799	1	blat.proc3829893.chain_1798	1
scaffold_16	retained_intron	6135997	6136065	+	asmbl_17066	none	STRG.19335.2,blat.proc3829881.chain_197	2	STRG.19335.1,blat.proc3829881.chain_198,blat.proc3829881.chain_199	3
scaffold_16	retained_intron	6195976	6196108	+	asmbl_17087,asmbl_17088,asmbl_17092	none	STRG.19373.3,STRG.19373.4,blat.proc3829881.chain_129	3	STRG.19373.1,STRG.19373.2,blat.proc3829881.chain_125,blat.proc3829881.chain_126,blat.proc3829881.chain_127,blat.proc3829881.chain_128,blat.proc3829881.chain_130,blat.proc3829881.chain_131	8
scaffold_13	alt_donor	2480216	2480217	-	asmbl_9419	none	STRG.15539.2,blat.proc3829895.chain_297	2	STRG.15539.1,blat.proc3829895.chain_299	2
scaffold_23	alt_donor	10331210	10331211	+	asmbl_31142	none	STRG.26228.3	1	STRG.26228.2	1
scaffold_8	starts_in_intron	16229762	16229762	+	asmbl_52430	none	STRG.10606.3	1	STRG.10606.1,STRG.10606.2,Trinity_GG_5907_c0_g1_i2,Trinity_GG_5907_c0_g1_i6,blat.proc3829875.chain_3128,blat.proc3829875.chain_3131	6
scaffold_9	alt_donor	16666233	16666234	-	asmbl_55571	none	STRG.11800.2	1	STRG.11800.1	1
scaffold_14	spliced_intron	7297974	7298196	+	asmbl_12124,asmbl_12125,asmbl_12127,asmbl_12128,asmbl_12129,asmbl_12130	none	STRG.17153.1,STRG.17153.2,STRG.17153.3,blat.proc3829879.chain_1852,blat.proc3829879.chain_1853,blat.proc3829879.chain_1854,blat.proc3829879.chain_1855,blat.proc3829879.chain_1856	8	Trinity_GG_9423_c1_g1_i1,blat.proc3829879.chain_1857	2
scaffold_15	retained_exon	2423793	2423840	-	asmbl_15006	none	STRG.18006.2,blat.proc3829895.chain_2709	2	STRG.18006.3,blat.proc3829895.chain_2711	2
scaffold_7	alt_acceptor	11184952	11184953	+	asmbl_51039	none	STRG.9252.2,blat.proc3829875.chain_1701	2	STRG.9252.1,blat.proc3829875.chain_1702	2
scaffold_8	retained_exon	16503359	16503451	-	asmbl_53409,asmbl_53420,asmbl_53423,asmbl_53428	none	STRG.10621.5,Trinity_GG_22960_c0_g1_i9,blat.proc3829891.chain_2858,blat.proc3829891.chain_2859,blat.proc3829891.chain_2865	5	STRG.10621.1,STRG.10621.2,STRG.10621.3,STRG.10621.4,Trinity_GG_22960_c0_g1_i18,Trinity_GG_22960_c0_g1_i19,Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2857,blat.proc3829891.chain_2860,blat.proc3829891.chain_2862,blat.proc3829891.chain_2863,blat.proc3829891.chain_2864,blat.proc3829891.chain_2867,blat.proc3829891.chain_2868,blat.proc3829891.chain_2869,blat.proc3829891.chain_2870,blat.proc3829891.chain_2871,blat.proc3829891.chain_2872	22
scaffold_28	starts_in_intron	8578818	8578818	+	asmbl_38456	none	Trinity_GG_16572_c0_g1_i1,blat.proc3829885.chain_3015	2	STRG.29916.1,blat.proc3829885.chain_3017,blat.proc3829885.chain_3018	3
scaffold_16	alternate_exon	11952153	11952270	+	asmbl_17420	none	STRG.19712.1,Trinity_GG_10805_c0_g1_i3,blat.proc3829881.chain_578	3	STRG.19712.3,Trinity_GG_10805_c0_g1_i4,blat.proc3829881.chain_577	3
scaffold_4	spliced_intron	7198052	7199617	-	asmbl_41440	none	blat.proc3829889.chain_622	1	STRG.4550.1,Trinity_GG_19534_c0_g1_i4,blat.proc3829889.chain_620,blat.proc3829889.chain_621	4
scaffold_9	alt_donor	3676021	3676022	-	asmbl_54884	none	STRG.10971.3,Trinity_GG_23073_c0_g1_i12,Trinity_GG_23073_c0_g1_i14,blat.proc3829891.chain_3075,blat.proc3829891.chain_3079	5	STRG.10971.1,blat.proc3829891.chain_3074,blat.proc3829891.chain_3084,blat.proc3829891.chain_3085	4
scaffold_8	alt_donor	5856597	5856598	+	asmbl_51897,asmbl_51898	none	STRG.9989.2,STRG.9989.4,Trinity_GG_5569_c0_g1_i2,Trinity_GG_5569_c0_g1_i3,blat.proc3829875.chain_2499,blat.proc3829875.chain_2501	6	STRG.9989.1,STRG.9989.3,Trinity_GG_5569_c0_g1_i1,Trinity_GG_5569_c0_g1_i4,blat.proc3829875.chain_2500,blat.proc3829875.chain_2502	6
scaffold_21	retained_intron	10497987	10498087	-	asmbl_28074,asmbl_28075	none	blat.proc3829899.chain_1647,blat.proc3829899.chain_1648	2	STRG.24504.1,blat.proc3829899.chain_1649,blat.proc3829899.chain_1650	3
scaffold_10	starts_in_intron	8329800	8329800	-	asmbl_3494	none	STRG.12584.1	1	STRG.12584.2,STRG.12584.3	2
scaffold_10	alt_acceptor	6072213	6072214	-	asmbl_3341,asmbl_3344,asmbl_3345,asmbl_3347,asmbl_3348,asmbl_3349	none	STRG.12437.1,STRG.12437.2,blat.proc3829893.chain_918,blat.proc3829893.chain_919,blat.proc3829893.chain_922,blat.proc3829893.chain_924	6	STRG.12437.3,blat.proc3829893.chain_920	2
scaffold_14	retained_intron	9506808	9506827	-	asmbl_13366	none	Trinity_GG_26734_c1_g1_i1	1	STRG.17333.1,blat.proc3829895.chain_2054	2
scaffold_18	retained_intron	824174	824499	+	asmbl_20351,asmbl_20353	none	STRG.20996.2,Trinity_GG_11513_c0_g1_i7,blat.proc3829881.chain_1778,blat.proc3829881.chain_1780	4	blat.proc3829881.chain_1782	1
scaffold_6	starts_in_intron	8241988	8241988	+	asmbl_47050	none	STRG.7698.2,Trinity_GG_4213_c0_g1_i2,blat.proc3829875.chain_48	3	STRG.7698.1,blat.proc3829875.chain_47	2
scaffold_18	retained_intron	6813788	6813985	+	asmbl_20716	none	Trinity_GG_11805_c0_g1_i3,blat.proc3829881.chain_2347	2	STRG.21383.1,STRG.21383.2,blat.proc3829881.chain_2345,blat.proc3829881.chain_2346	4
scaffold_12	skipped_exon	1056407	1057445	+	asmbl_8420	none	STRG.14436.2	1	STRG.14436.1,STRG.14436.3,STRG.14436.4,blat.proc3829877.chain_2886	4
scaffold_6	retained_intron	8460271	8460401	+	asmbl_47061,asmbl_47063	none	STRG.7708.1,STRG.7708.4,blat.proc3829875.chain_73	3	STRG.7708.2,blat.proc3829875.chain_72	2
scaffold_9	retained_intron	11842724	11842821	-	asmbl_55297,asmbl_55298	none	blat.proc3829891.chain_3620,blat.proc3829891.chain_3622	2	STRG.11491.1,blat.proc3829891.chain_3619,blat.proc3829891.chain_3623,blat.proc3829891.chain_3624,blat.proc3829891.chain_3625,blat.proc3829891.chain_3626	6
scaffold_16	retained_intron	810150	810259	-	asmbl_16079,asmbl_16083	none	blat.proc3829895.chain_3746,blat.proc3829895.chain_3748	2	STRG.19052.2,STRG.19052.4,blat.proc3829895.chain_3747	3
scaffold_4	retained_exon	12711343	12711354	+	asmbl_43074	none	blat.proc3829873.chain_1195	1	STRG.4912.1,blat.proc3829873.chain_1201	2
scaffold_14	skipped_exon	8307389	8308665	+	asmbl_12201	none	STRG.17241.2	1	STRG.17241.1,blat.proc3829879.chain_1921	2
scaffold_15	alternate_exon	1688913	1690166	+	asmbl_13969	none	STRG.17962.1,Trinity_GG_9893_c0_g1_i2,blat.proc3829879.chain_2663,blat.proc3829879.chain_2664	4	STRG.17962.2	1
scaffold_25	retained_intron	8476570	8476690	+	asmbl_33733	none	Trinity_GG_15254_c0_g1_i4,blat.proc3829885.chain_664	2	STRG.27664.1,blat.proc3829885.chain_661,blat.proc3829885.chain_662	3
scaffold_22	alt_donor	10320618	10320619	+	asmbl_29644	none	STRG.25367.1	1	STRG.25367.2,STRG.25367.3	2
scaffold_7	alt_acceptor	18394768	18394769	-	asmbl_50297,asmbl_50298,asmbl_50299	none	STRG.9659.4,STRG.9659.5,blat.proc3829891.chain_1873	3	STRG.9659.1,STRG.9659.2,STRG.9659.3,Trinity_GG_22427_c0_g1_i11,blat.proc3829891.chain_1868,blat.proc3829891.chain_1869,blat.proc3829891.chain_1871,blat.proc3829891.chain_1875	8
scaffold_6	retained_intron	5197857	5197979	+	asmbl_46867,asmbl_46868	none	STRG.7489.4,blat.proc3829873.chain_3589	2	STRG.7489.2,STRG.7489.3,STRG.7489.5,Trinity_GG_4091_c0_g1_i10,Trinity_GG_4091_c0_g1_i6,blat.proc3829873.chain_3581,blat.proc3829873.chain_3582,blat.proc3829873.chain_3583,blat.proc3829873.chain_3585,blat.proc3829873.chain_3586,blat.proc3829873.chain_3587	11
scaffold_19	starts_in_intron	13645728	13645728	-	asmbl_21890	none	blat.proc3829897.chain_3448	1	STRG.22672.1	1
scaffold_11	spliced_intron	15637023	15637151	+	asmbl_6100	none	STRG.14286.1,blat.proc3829877.chain_2767	2	STRG.14286.2	1
scaffold_9	ends_in_intron	16655110	16655110	-	asmbl_55561	none	blat.proc3829893.chain_216	1	STRG.11803.1,STRG.11803.2,STRG.11803.3,STRG.11803.4,blat.proc3829893.chain_209,blat.proc3829893.chain_210,blat.proc3829893.chain_211,blat.proc3829893.chain_212,blat.proc3829893.chain_213	9
scaffold_4	alt_donor	7317289	7317290	-	asmbl_41445	none	STRG.4569.2	1	STRG.4569.1	1
scaffold_14	alt_donor	4199143	4199144	-	asmbl_13018	none	STRG.16962.1,blat.proc3829895.chain_1630,blat.proc3829895.chain_1631	3	STRG.16962.2	1
scaffold_6	starts_in_intron	18716637	18716637	+	asmbl_47791	none	Trinity_GG_4700_c0_g1_i4,blat.proc3829875.chain_963	2	STRG.8532.1,STRG.8532.2,Trinity_GG_4700_c0_g1_i3,blat.proc3829875.chain_962	4
scaffold_22	ends_in_intron	1008843	1008843	+	asmbl_29209,asmbl_29211	none	STRG.24742.4,blat.proc3829883.chain_1810	2	STRG.24742.2,blat.proc3829883.chain_1807,blat.proc3829883.chain_1808,blat.proc3829883.chain_1809	4
scaffold_8	retained_exon	17651896	17651979	-	asmbl_53485	none	STRG.10674.2,blat.proc3829891.chain_2794	2	STRG.10674.1,blat.proc3829891.chain_2795	2
scaffold_7	retained_intron	1235897	1236328	+	asmbl_50468,asmbl_50469,asmbl_50470,asmbl_50474,asmbl_50479,asmbl_50480	none	STRG.8627.2,STRG.8627.5,STRG.8627.6,Trinity_GG_4740_c0_g1_i13,Trinity_GG_4740_c0_g1_i14,Trinity_GG_4740_c0_g1_i16,blat.proc3829875.chain_1042,blat.proc3829875.chain_1043,blat.proc3829875.chain_1044,blat.proc3829875.chain_1045,blat.proc3829875.chain_1048,blat.proc3829875.chain_1049	12	STRG.8627.3,Trinity_GG_4740_c0_g1_i10,blat.proc3829875.chain_1053	3
scaffold_10	starts_in_intron	14698509	14698509	+	asmbl_4930	none	blat.proc3829877.chain_1500	1	STRG.13011.1,STRG.13011.2,blat.proc3829877.chain_1497,blat.proc3829877.chain_1498,blat.proc3829877.chain_1501	5
scaffold_6	retained_exon	11482748	11482799	+	asmbl_47269	none	STRG.7936.4	1	STRG.7936.1,STRG.7936.3,blat.proc3829875.chain_299,blat.proc3829875.chain_301,blat.proc3829875.chain_304	5
scaffold_2	alt_acceptor	6517982	6517983	+	asmbl_24498,asmbl_24499,asmbl_24500,asmbl_24501	none	STRG.2022.1,STRG.2022.3,STRG.2022.4,STRG.2022.5,Trinity_GG_1139_c0_g1_i2,blat.proc3829871.chain_2079	6	STRG.2022.2	1
scaffold_12	retained_intron	12836971	12837042	-	asmbl_8024	none	STRG.15163.1	1	STRG.15163.2	1
scaffold_2	alt_acceptor	6654775	6654776	+	asmbl_24516	none	Trinity_GG_1141_c0_g1_i1,blat.proc3829871.chain_2084	2	STRG.2024.1,STRG.2024.2,blat.proc3829871.chain_2083,blat.proc3829871.chain_2085	4
scaffold_17	alt_donor	11567672	11567673	+	asmbl_18362	none	STRG.20693.2	1	STRG.20693.1,STRG.20693.3,STRG.20693.4,Trinity_GG_11317_c0_g1_i1,blat.proc3829881.chain_1479	5
scaffold_3	spliced_intron	14319899	14319995	-	asmbl_39302	none	STRG.3769.1,Trinity_GG_19098_c1_g1_i2,blat.proc3829887.chain_3565	3	STRG.3769.2,Trinity_GG_19098_c1_g1_i4,blat.proc3829887.chain_3564	3
scaffold_4	skipped_exon	8771059	8771702	+	asmbl_42912,asmbl_42913,asmbl_42914,asmbl_42916	none	STRG.4690.1,STRG.4690.2,STRG.4690.3,STRG.4690.4,Trinity_GG_2586_c0_g1_i2,blat.proc3829873.chain_1026,blat.proc3829873.chain_1027	7	STRG.4690.5	1
scaffold_614	starts_in_intron	4006	4006	+	asmbl_49408	none	blat.proc3829885.chain_3398	1	STRG.30379.1,Trinity_GG_16808_c0_g1_i1,blat.proc3829885.chain_3396,blat.proc3829885.chain_3397	4
scaffold_1	starts_in_intron	14199851	14199851	+	asmbl_2323,asmbl_2325	none	STRG.1004.3,Trinity_GG_586_c1_g1_i1,blat.proc3829871.chain_1053	3	STRG.1004.1,STRG.1004.2,Trinity_GG_586_c0_g1_i1,Trinity_GG_586_c0_g1_i3,Trinity_GG_586_c0_g1_i4,Trinity_GG_586_c0_g1_i5,blat.proc3829871.chain_1045,blat.proc3829871.chain_1046,blat.proc3829871.chain_1048,blat.proc3829871.chain_1049,blat.proc3829871.chain_1052	11
scaffold_2	ends_in_intron	4679175	4679175	+	asmbl_24397	none	STRG.1894.2	1	STRG.1894.1,blat.proc3829871.chain_1881,blat.proc3829871.chain_1884,blat.proc3829871.chain_1885	4
scaffold_4	retained_intron	17805603	17805997	+	asmbl_43416	none	blat.proc3829873.chain_1626	1	STRG.5378.2,blat.proc3829873.chain_1628	2
scaffold_2258	retained_exon	812	921	-	asmbl_30575	none	STRG.30708.1	1	STRG.30708.2	1
scaffold_12	alt_donor	135054	135055	+	asmbl_8402	none	blat.proc3829877.chain_2914	1	STRG.14421.2	1
scaffold_20	alternate_exon	4232139	4232646	+	asmbl_25720	none	STRG.23095.3,blat.proc3829883.chain_218	2	STRG.23095.1,Trinity_GG_12738_c1_g1_i1,blat.proc3829883.chain_217	3
scaffold_10	ends_in_intron	7274521	7274521	+	asmbl_4552	none	blat.proc3829877.chain_1102	1	STRG.12531.1,STRG.12531.2,STRG.12531.3,blat.proc3829877.chain_1100,blat.proc3829877.chain_1103,blat.proc3829877.chain_1105	6
scaffold_12	alt_acceptor	10050831	10050832	-	asmbl_7851	none	STRG.14968.2,blat.proc3829893.chain_3363	2	STRG.14968.1	1
scaffold_10	alt_acceptor	5684917	5684918	+	asmbl_4470,asmbl_4471	none	STRG.12387.2,STRG.12387.3,blat.proc3829877.chain_1042,blat.proc3829877.chain_1043	4	STRG.12387.1	1
scaffold_7	retained_exon	9767588	9767656	-	asmbl_49873	none	STRG.9157.2,blat.proc3829891.chain_1375	2	STRG.9157.1	1
scaffold_14	ends_in_intron	209431	209431	-	asmbl_12780,asmbl_12784	none	STRG.16702.6,Trinity_GG_26362_c0_g2_i1,blat.proc3829895.chain_1401	3	STRG.16702.1,Trinity_GG_26362_c0_g1_i2,Trinity_GG_26362_c0_g1_i3,blat.proc3829895.chain_1402,blat.proc3829895.chain_1403	5
scaffold_9	starts_in_intron	9475027	9475027	-	asmbl_55146,asmbl_55149	none	STRG.11298.3,blat.proc3829891.chain_3465	2	STRG.11298.1,blat.proc3829891.chain_3462	2
scaffold_12	retained_exon	6427107	6428070	-	asmbl_7669	none	STRG.14731.4	1	STRG.14731.1,STRG.14731.2,STRG.14731.3,blat.proc3829893.chain_3149,blat.proc3829893.chain_3150,blat.proc3829893.chain_3151	6
scaffold_22	alternate_exon	7884825	7884917	-	asmbl_30197	none	blat.proc3829899.chain_2209	1	blat.proc3829899.chain_2210,blat.proc3829899.chain_2212	2
scaffold_21	starts_in_intron	4256380	4256380	-	asmbl_27595	none	Trinity_GG_30376_c0_g1_i2	1	STRG.23990.1,blat.proc3829899.chain_1049	2
scaffold_21	starts_in_intron	6953843	6953843	-	asmbl_27788	none	blat.proc3829899.chain_1218	1	STRG.24208.1,blat.proc3829899.chain_1219	2
scaffold_12	skipped_exon	2576972	2578181	+	asmbl_8463	none	STRG.14487.2,Trinity_GG_8011_c0_g1_i2,blat.proc3829877.chain_3002	3	STRG.14487.1,Trinity_GG_8011_c0_g1_i1,blat.proc3829877.chain_3001	3
scaffold_13	alt_donor	3996824	3996825	-	asmbl_9564	none	STRG.15713.2,blat.proc3829895.chain_459	2	STRG.15713.1,blat.proc3829895.chain_460,blat.proc3829895.chain_461	3
scaffold_15	alt_acceptor	11140815	11140816	-	asmbl_15499,asmbl_15501,asmbl_15502,asmbl_15503,asmbl_15504	none	blat.proc3829895.chain_3283,blat.proc3829895.chain_3286,blat.proc3829895.chain_3287,blat.proc3829895.chain_3288,blat.proc3829895.chain_3289	5	blat.proc3829895.chain_3284,blat.proc3829895.chain_3285	2
scaffold_17	spliced_intron	13844846	13845553	-	asmbl_19427	none	STRG.20849.3,blat.proc3829897.chain_1693	2	STRG.20849.1,STRG.20849.2	2
scaffold_7	alternate_exon	18771810	18778754	-	asmbl_50320	none	blat.proc3829891.chain_1876	1	blat.proc3829891.chain_1877	1
scaffold_7	alt_donor	8662330	8662331	-	asmbl_49835,asmbl_49836,asmbl_49838	none	STRG.9091.1,STRG.9091.2,blat.proc3829891.chain_1357,blat.proc3829891.chain_1358	4	blat.proc3829891.chain_1356	1
scaffold_1	retained_intron	16722860	16722887	+	asmbl_2480	none	STRG.1173.2	1	STRG.1173.1	1
scaffold_14	ends_in_intron	12595737	12595737	+	asmbl_12417	none	STRG.17564.2,blat.proc3829879.chain_2188	2	STRG.17564.1,STRG.17564.3,STRG.17564.4,blat.proc3829879.chain_2187,blat.proc3829879.chain_2189	5
scaffold_16	starts_in_intron	10978450	10978450	-	asmbl_16502	none	STRG.19633.2	1	STRG.19633.1,blat.proc3829897.chain_538,blat.proc3829897.chain_540	3
scaffold_20	retained_intron	7899285	7899371	-	asmbl_26865	none	STRG.23328.1,Trinity_GG_30006_c1_g1_i2,blat.proc3829899.chain_317	3	STRG.23328.2,Trinity_GG_30006_c1_g1_i1,blat.proc3829899.chain_316	3
scaffold_5	retained_intron	15766781	15766917	+	asmbl_44681	none	blat.proc3829873.chain_2875	1	STRG.6763.1,blat.proc3829873.chain_2876,blat.proc3829873.chain_2877,blat.proc3829873.chain_2880,blat.proc3829873.chain_2882	5
scaffold_26	starts_in_intron	1549117	1549117	-	asmbl_34682	none	blat.proc3829901.chain_1139	1	STRG.27904.1,blat.proc3829901.chain_1138	2
scaffold_18	skipped_exon	3916636	3918640	-	asmbl_19822	none	STRG.21192.2	1	STRG.21192.3,STRG.21192.4,STRG.21192.5,blat.proc3829897.chain_2089	4
scaffold_1	starts_in_intron	7270262	7270262	-	asmbl_429	none	blat.proc3829887.chain_427	1	blat.proc3829887.chain_426	1
scaffold_13	ends_in_intron	2333571	2333571	+	asmbl_10592,asmbl_10593,asmbl_10594	none	blat.proc3829879.chain_169,blat.proc3829879.chain_170,blat.proc3829879.chain_173	3	STRG.15543.2,STRG.15543.3,STRG.15543.4,STRG.15543.5,STRG.15543.6,STRG.15543.7,STRG.15543.8,STRG.15543.9	8
scaffold_6	starts_in_intron	7167841	7167841	+	asmbl_46985	none	blat.proc3829873.chain_3725	1	STRG.7615.1,blat.proc3829873.chain_3724	2
scaffold_1	retained_exon	7376407	7376531	-	asmbl_441	none	STRG.517.2,blat.proc3829887.chain_405	2	STRG.517.3	1
scaffold_24	skipped_exon	1064378	1064849	+	asmbl_32072	none	STRG.26360.2,Trinity_GG_14583_c0_g1_i2,blat.proc3829883.chain_3293	3	STRG.26360.5	1
scaffold_15	ends_in_intron	4989413	4989413	-	asmbl_15195	none	blat.proc3829895.chain_2976	1	STRG.18198.1	1
scaffold_2	retained_intron	4018804	4018989	-	asmbl_23065	none	blat.proc3829887.chain_1707	1	STRG.1843.2	1
scaffold_19	retained_exon	10205501	10205553	+	asmbl_22429	none	STRG.22388.2,blat.proc3829881.chain_3295	2	STRG.22388.1,blat.proc3829881.chain_3294	2
scaffold_11	alt_donor	6590706	6590707	-	asmbl_6699	none	STRG.13693.1,blat.proc3829893.chain_2139	2	STRG.13693.2,blat.proc3829893.chain_2138	2
scaffold_7	retained_intron	1235502	1235757	+	asmbl_50468,asmbl_50469	none	STRG.8627.6,Trinity_GG_4740_c0_g1_i13,Trinity_GG_4740_c0_g1_i14,blat.proc3829875.chain_1044,blat.proc3829875.chain_1045,blat.proc3829875.chain_1048	6	STRG.8627.2,STRG.8627.8,Trinity_GG_4740_c0_g1_i16,blat.proc3829875.chain_1042,blat.proc3829875.chain_1043,blat.proc3829875.chain_1049	6
scaffold_3	starts_in_intron	7714345	7714345	-	asmbl_38929,asmbl_38930,asmbl_38931,asmbl_38933,asmbl_38934	none	blat.proc3829887.chain_3171,blat.proc3829887.chain_3172,blat.proc3829887.chain_3173,blat.proc3829887.chain_3175,blat.proc3829887.chain_3176	5	STRG.3361.1,STRG.3361.2,Trinity_GG_18844_c3_g1_i1,blat.proc3829887.chain_3170,blat.proc3829887.chain_3174,blat.proc3829887.chain_3177	6
scaffold_2	spliced_intron	690646	690687	+	asmbl_24117	none	STRG.1553.3	1	STRG.1553.2,STRG.1553.4,blat.proc3829871.chain_1529	3
scaffold_3	alternate_exon	3245921	3246435	+	asmbl_39900	none	STRG.3087.3	1	STRG.3087.1,STRG.3087.4,Trinity_GG_1771_c0_g1_i6,blat.proc3829871.chain_3299,blat.proc3829871.chain_3308	5
scaffold_6	starts_in_intron	10381741	10381741	+	asmbl_47218	none	blat.proc3829875.chain_246	1	STRG.7870.1,blat.proc3829875.chain_244,blat.proc3829875.chain_245	3
scaffold_15	starts_in_intron	1961511	1961511	+	asmbl_13980	none	STRG.17971.3	1	STRG.17971.2	1
scaffold_14	alt_donor	11292036	11292037	-	asmbl_13451	none	STRG.17446.1,blat.proc3829895.chain_2113	2	STRG.17446.2	1
scaffold_11	spliced_intron	13035297	13035575	-	asmbl_7095,asmbl_7097	none	STRG.14169.2,blat.proc3829893.chain_2576	2	STRG.14169.3,Trinity_GG_24917_c0_g2_i1,blat.proc3829893.chain_2578	3
scaffold_20	spliced_intron	10861471	10862078	+	asmbl_26153	none	blat.proc3829883.chain_748	1	STRG.23601.1,Trinity_GG_13067_c0_g1_i3,Trinity_GG_13067_c0_g1_i4,blat.proc3829883.chain_745,blat.proc3829883.chain_746	5
scaffold_20	alternate_exon	6948694	6948956	-	asmbl_26776,asmbl_26777	none	STRG.23254.6,STRG.23254.7,blat.proc3829899.chain_238	3	STRG.23254.2,STRG.23254.3,STRG.23254.5,blat.proc3829899.chain_235	4
scaffold_3	retained_intron	1841145	1841393	+	asmbl_39845	none	STRG.3006.2,Trinity_GG_1707_c1_g1_i1,blat.proc3829871.chain_3189	3	STRG.3006.1,blat.proc3829871.chain_3188	2
scaffold_2	skipped_exon	14136270	14137059	-	asmbl_23574	none	blat.proc3829887.chain_2196	1	STRG.2406.1,STRG.2406.3,blat.proc3829887.chain_2197,blat.proc3829887.chain_2198	4
scaffold_20	skipped_exon	425819	428277	+	asmbl_25506	none	STRG.22729.1	1	STRG.22729.2	1
scaffold_17	alt_donor	1732595	1732596	-	asmbl_18774	none	STRG.19997.2,blat.proc3829897.chain_971	2	STRG.19997.1,blat.proc3829897.chain_970	2
scaffold_20	alt_donor	631333	631334	-	asmbl_26435	none	STRG.22751.2,blat.proc3829897.chain_3524	2	blat.proc3829897.chain_3525	1
scaffold_23	retained_exon	2586469	2587696	-	asmbl_31462	none	STRG.25705.5,blat.proc3829899.chain_2752	2	STRG.25705.2,blat.proc3829899.chain_2749	2
scaffold_1	alternate_exon	20469377	20469410	-	asmbl_1181	none	STRG.1395.2	1	STRG.1395.1	1
scaffold_12	alt_acceptor	3803787	3803788	+	asmbl_8533	none	STRG.14574.2	1	STRG.14574.3,blat.proc3829877.chain_3095	2
scaffold_11	skipped_exon	3514872	3517181	+	asmbl_5404	none	STRG.13473.1	1	blat.proc3829877.chain_1976	1
scaffold_15	retained_intron	14322902	14323125	-	asmbl_15729,asmbl_15736	none	STRG.18855.3,Trinity_GG_27599_c0_g1_i11	2	blat.proc3829895.chain_3603	1
scaffold_17	retained_intron	1289822	1289896	-	asmbl_18728,asmbl_18729	none	Trinity_GG_28167_c0_g1_i4,blat.proc3829897.chain_836,blat.proc3829897.chain_842	3	STRG.19952.1,STRG.19952.3,STRG.19952.4,STRG.19952.5,blat.proc3829897.chain_838,blat.proc3829897.chain_840,blat.proc3829897.chain_841,blat.proc3829897.chain_843	8
scaffold_5	alternate_exon	16202679	16203074	-	asmbl_46126	none	Trinity_GG_20802_c1_g1_i1,blat.proc3829889.chain_2811	2	STRG.6796.1	1
scaffold_3	starts_in_intron	934262	934262	+	asmbl_39772	none	STRG.2914.3	1	STRG.2914.1	1
scaffold_14	retained_exon	8007596	8007645	+	asmbl_12166	none	STRG.17203.2,blat.proc3829879.chain_1947	2	STRG.17203.3	1
scaffold_14	spliced_intron	11569194	11569328	-	asmbl_13477	none	STRG.17478.1,blat.proc3829895.chain_2197	2	STRG.17478.2	1
scaffold_2	retained_intron	7782690	7785425	+	asmbl_24605	none	STRG.2076.1,Trinity_GG_1189_c0_g1_i13,Trinity_GG_1189_c0_g1_i14,Trinity_GG_1189_c0_g1_i3,blat.proc3829871.chain_2203,blat.proc3829871.chain_2204,blat.proc3829871.chain_2210,blat.proc3829871.chain_2212	8	STRG.2076.4,STRG.2076.7,blat.proc3829871.chain_2202,blat.proc3829871.chain_2207,blat.proc3829871.chain_2213	5
scaffold_1	retained_intron	8759445	8759617	-	asmbl_493,asmbl_497,asmbl_502	none	STRG.583.2,STRG.583.4,STRG.583.5,blat.proc3829887.chain_507,blat.proc3829887.chain_509	5	blat.proc3829887.chain_511	1
scaffold_14	alt_acceptor	1970214	1970215	+	asmbl_11816	none	STRG.16808.2	1	STRG.16808.1,blat.proc3829879.chain_1532	2
scaffold_9	retained_intron	15746966	15746996	+	asmbl_54562	none	STRG.11753.1,Trinity_GG_6563_c1_g1_i1,blat.proc3829877.chain_511	3	STRG.11753.2	1
scaffold_5	starts_in_intron	8131981	8131981	+	asmbl_44194	none	blat.proc3829873.chain_2318	1	STRG.6170.1,blat.proc3829873.chain_2319	2
scaffold_28	retained_exon	5391043	5391083	+	asmbl_38279,asmbl_38284	none	STRG.29664.1,STRG.29664.2,Trinity_GG_16450_c0_g1_i2,blat.proc3829885.chain_2784	4	Trinity_GG_16450_c0_g1_i9,blat.proc3829885.chain_2787	2
scaffold_22	starts_in_intron	685499	685499	+	asmbl_29172	none	STRG.24704.2,Trinity_GG_13656_c0_g1_i2,blat.proc3829883.chain_1755	3	STRG.24704.1	1
scaffold_4	starts_in_intron	19215548	19215548	+	asmbl_43475	none	blat.proc3829873.chain_1737	1	STRG.5503.1	1
scaffold_6	alternate_exon	5182107	5182682	-	asmbl_48342	none	STRG.7482.2	1	STRG.7482.1	1
scaffold_17	spliced_intron	1303722	1303950	-	asmbl_18737,asmbl_18739,asmbl_18740,asmbl_18741,asmbl_18743,asmbl_18745	none	STRG.19954.1,STRG.19954.2,blat.proc3829897.chain_927,blat.proc3829897.chain_928,blat.proc3829897.chain_930,blat.proc3829897.chain_931,blat.proc3829897.chain_932	7	blat.proc3829897.chain_929	1
scaffold_6	starts_in_intron	8596979	8596979	+	asmbl_47100	none	blat.proc3829875.chain_93	1	STRG.7731.1,blat.proc3829875.chain_94	2
scaffold_18	skipped_exon	2055960	2058306	-	asmbl_19736	none	STRG.21088.1,blat.proc3829897.chain_1996	2	STRG.21088.2,blat.proc3829897.chain_1995	2
scaffold_6	spliced_intron	5752193	5752361	+	asmbl_46915,asmbl_46916	none	STRG.7525.1,STRG.7525.2,blat.proc3829873.chain_3647	3	blat.proc3829873.chain_3644	1
scaffold_7	retained_exon	1439519	1440370	-	asmbl_49539	none	STRG.8631.1,blat.proc3829891.chain_1003	2	STRG.8631.2	1
scaffold_5	retained_intron	15764229	15764728	+	asmbl_44684	none	blat.proc3829873.chain_2882	1	blat.proc3829873.chain_2881	1
scaffold_28	retained_intron	2622616	2622713	+	asmbl_38084	none	blat.proc3829885.chain_2522	1	STRG.29418.1,blat.proc3829885.chain_2523	2
scaffold_6	spliced_intron	13726449	13726589	-	asmbl_48881	none	STRG.8113.1,Trinity_GG_21627_c0_g1_i1,blat.proc3829891.chain_428	3	STRG.8113.2,blat.proc3829891.chain_427	2
scaffold_17	skipped_exon	9029724	9031727	-	asmbl_19188,asmbl_19192	none	STRG.20520.3,STRG.20520.4	2	STRG.20520.1,STRG.20520.5,STRG.20520.6	3
scaffold_10	starts_in_intron	3820376	3820376	+	asmbl_4358	none	blat.proc3829877.chain_877	1	STRG.12205.1,blat.proc3829877.chain_878	2
scaffold_4	retained_intron	14618985	14619065	+	asmbl_43233	none	blat.proc3829873.chain_1429	1	STRG.5085.2	1
scaffold_3	spliced_intron	17831614	17832488	+	asmbl_40658	none	STRG.3994.1,blat.proc3829873.chain_398	2	STRG.3994.2,blat.proc3829873.chain_400	2
scaffold_12	spliced_intron	12003833	12004558	-	asmbl_7976	none	STRG.15099.1,Trinity_GG_25403_c0_g1_i3,blat.proc3829893.chain_3434	3	STRG.15099.2,STRG.15099.3,blat.proc3829893.chain_3432,blat.proc3829893.chain_3433	4
scaffold_14	alt_acceptor	6683560	6683561	-	asmbl_13134,asmbl_13135	none	STRG.17094.1,blat.proc3829895.chain_1794,blat.proc3829895.chain_1795	3	STRG.17094.2	1
scaffold_12	starts_in_intron	2263951	2263951	-	asmbl_7455	none	blat.proc3829893.chain_2867	1	STRG.14478.1,blat.proc3829893.chain_2866	2
scaffold_12	spliced_intron	3331444	3331469	+	asmbl_8510	none	STRG.14546.3	1	STRG.14546.1,STRG.14546.2,blat.proc3829877.chain_3047,blat.proc3829877.chain_3049	4
scaffold_4	alt_acceptor	5883150	5883151	-	asmbl_41383	none	STRG.4480.1,blat.proc3829889.chain_538	2	STRG.4480.2,blat.proc3829889.chain_536,blat.proc3829889.chain_537	3
scaffold_20	alternate_exon	6983461	6983569	-	asmbl_26780	none	STRG.23247.3	1	STRG.23247.1	1
scaffold_1	retained_intron	6284662	6285080	-	asmbl_339	none	STRG.425.7,Trinity_GG_17251_c0_g1_i9,blat.proc3829887.chain_331	3	STRG.425.1,STRG.425.3,STRG.425.6,Trinity_GG_17251_c0_g1_i12,blat.proc3829887.chain_325,blat.proc3829887.chain_328,blat.proc3829887.chain_335	7
scaffold_15	retained_intron	13760201	13760410	-	asmbl_15680	none	STRG.18798.2,Trinity_GG_27577_c1_g1_i2,blat.proc3829895.chain_3563	3	STRG.18798.1,blat.proc3829895.chain_3562,blat.proc3829895.chain_3565,blat.proc3829895.chain_3566	4
scaffold_12	retained_exon	9669326	9669967	+	asmbl_8832	none	STRG.14928.2,Trinity_GG_8223_c0_g1_i2,blat.proc3829877.chain_3380	3	Trinity_GG_8223_c0_g1_i3,blat.proc3829877.chain_3378	2
scaffold_11	alt_donor	12892235	12892236	+	asmbl_5992	none	STRG.14159.1,blat.proc3829877.chain_2607	2	STRG.14159.2,blat.proc3829877.chain_2606	2
scaffold_13	alt_acceptor	13570739	13570740	+	asmbl_11378	none	STRG.16402.1	1	Trinity_GG_9001_c0_g1_i1,Trinity_GG_9001_c0_g1_i2,blat.proc3829879.chain_1119,blat.proc3829879.chain_1120	4
scaffold_19	starts_in_intron	5458996	5458996	-	asmbl_21373	none	blat.proc3829897.chain_2870	1	STRG.22096.1,blat.proc3829897.chain_2868	2
scaffold_18	spliced_intron	9787536	9787656	-	asmbl_20117,asmbl_20118	none	STRG.21574.1,STRG.21574.2,blat.proc3829897.chain_2421	3	Trinity_GG_29074_c0_g1_i2,blat.proc3829897.chain_2420	2
scaffold_17	alt_donor	2765655	2765656	-	asmbl_18829	none	STRG.20063.2,blat.proc3829897.chain_1021	2	STRG.20063.1,blat.proc3829897.chain_1022	2
scaffold_7	starts_in_intron	5470488	5470488	+	asmbl_50697	none	Trinity_GG_4848_c0_g1_i2,blat.proc3829875.chain_1223	2	STRG.8865.1,Trinity_GG_4848_c0_g1_i1,blat.proc3829875.chain_1222	3
scaffold_28	ends_in_intron	4162415	4162415	-	asmbl_37519	none	Trinity_GG_33583_c0_g1_i1,blat.proc3829901.chain_2692	2	STRG.29588.1	1
scaffold_22	starts_in_intron	205091	205091	+	asmbl_29109,asmbl_29111	none	STRG.24659.2,Trinity_GG_13624_c0_g1_i1,Trinity_GG_13624_c0_g1_i3,blat.proc3829883.chain_1692,blat.proc3829883.chain_1693	5	STRG.24659.1,blat.proc3829883.chain_1691	2
scaffold_16	alternate_exon	15232919	15233141	+	asmbl_17527	none	STRG.19871.2,Trinity_GG_10849_c1_g1_i1	2	STRG.19871.1	1
scaffold_9	alt_acceptor	12632945	12632946	+	asmbl_54432	none	STRG.11574.2,Trinity_GG_6469_c0_g1_i8,blat.proc3829877.chain_357	3	STRG.11574.1,STRG.11574.3,STRG.11574.4,Trinity_GG_6469_c0_g1_i5,Trinity_GG_6469_c0_g1_i6,blat.proc3829877.chain_353,blat.proc3829877.chain_355	7
scaffold_1	retained_intron	10951165	10951333	+	asmbl_2026,asmbl_2029	none	STRG.713.4,blat.proc3829871.chain_748,blat.proc3829871.chain_754	3	STRG.713.1,STRG.713.2,STRG.713.3,blat.proc3829871.chain_749,blat.proc3829871.chain_750,blat.proc3829871.chain_751,blat.proc3829871.chain_752,blat.proc3829871.chain_753	8
scaffold_13	retained_exon	14561660	14561718	-	asmbl_10164	none	STRG.16497.3	1	STRG.16497.1,STRG.16497.2,STRG.16497.5,blat.proc3829895.chain_1167,blat.proc3829895.chain_1172	5
scaffold_13	alternate_exon	12869879	12870371	-	asmbl_10108	none	STRG.16367.3,Trinity_GG_26182_c0_g1_i1,blat.proc3829895.chain_1109	3	STRG.16367.1	1
scaffold_6	alt_acceptor	12484380	12484381	+	asmbl_47338	none	STRG.8000.1,Trinity_GG_4381_c0_g1_i2,blat.proc3829875.chain_392	3	STRG.8000.4	1
scaffold_8	alternate_exon	14565462	14569797	+	asmbl_52369,asmbl_52376	none	STRG.10535.1,blat.proc3829875.chain_3054,blat.proc3829875.chain_3057	3	STRG.10535.3,blat.proc3829875.chain_3058	2
scaffold_5	spliced_intron	5061929	5062040	+	asmbl_44006	none	STRG.5955.1,blat.proc3829873.chain_2052	2	Trinity_GG_3232_c0_g1_i2,Trinity_GG_3232_c0_g1_i3,blat.proc3829873.chain_2050,blat.proc3829873.chain_2051	4
scaffold_5	skipped_exon	13660264	13661299	-	asmbl_45925,asmbl_45928	none	STRG.6576.2,blat.proc3829889.chain_2644,blat.proc3829889.chain_2647	3	STRG.6576.1,blat.proc3829889.chain_2645	2
scaffold_28	spliced_intron	6557835	6557938	-	asmbl_37685,asmbl_37686	none	STRG.29733.1,STRG.29733.2,blat.proc3829901.chain_2868	3	STRG.29733.3,blat.proc3829901.chain_2867	2
scaffold_28	alt_acceptor	36594	36595	+	asmbl_37941,asmbl_37942	none	STRG.29211.1,STRG.29211.2,blat.proc3829885.chain_2359,blat.proc3829885.chain_2361	4	blat.proc3829885.chain_2360	1
scaffold_26	alt_donor	9089275	9089276	-	asmbl_35040,asmbl_35041,asmbl_35042	none	STRG.28455.2,STRG.28455.3,blat.proc3829901.chain_1604	3	STRG.28455.1,blat.proc3829901.chain_1605	2
scaffold_10	retained_intron	8346979	8347182	+	asmbl_4594	none	STRG.12594.1,blat.proc3829877.chain_1179	2	STRG.12594.2	1
scaffold_20	alternate_exon	240693	243607	-	asmbl_26404	none	STRG.22700.2	1	STRG.22700.1	1
scaffold_28	skipped_exon	4558423	4559051	-	asmbl_37535	none	STRG.29608.2,blat.proc3829901.chain_2730	2	STRG.29608.1	1
scaffold_17	spliced_intron	3989814	3990042	-	asmbl_18881,asmbl_18882	none	STRG.20147.1,STRG.20147.2,blat.proc3829897.chain_1115	3	blat.proc3829897.chain_1116	1
scaffold_8	alternate_exon	4341175	4343427	+	asmbl_51823	none	STRG.9912.1,Trinity_GG_5511_c0_g1_i1,blat.proc3829875.chain_2386,blat.proc3829875.chain_2389	4	STRG.9912.3,blat.proc3829875.chain_2388	2
scaffold_6	starts_in_intron	69345	69345	+	asmbl_46582	none	STRG.7057.3,Trinity_GG_3904_c2_g1_i1	2	STRG.7057.2,blat.proc3829873.chain_3227	2
scaffold_13	alt_acceptor	520419	520420	+	asmbl_10453,asmbl_10454,asmbl_10456,asmbl_10457,asmbl_10459,asmbl_10460,asmbl_10461	none	STRG.15434.1,STRG.15434.2,STRG.15434.3,STRG.15434.5,Trinity_GG_8491_c0_g1_i1,Trinity_GG_8491_c0_g1_i2,blat.proc3829879.chain_110,blat.proc3829879.chain_111,blat.proc3829879.chain_113,blat.proc3829879.chain_114,blat.proc3829879.chain_115,blat.proc3829879.chain_116	12	STRG.15434.4	1
scaffold_6	alternate_exon	14513104	14513154	-	asmbl_48949	none	STRG.8207.2	1	STRG.8207.1,blat.proc3829891.chain_523	2
scaffold_23	alt_donor	1540972	1540973	-	asmbl_31376,asmbl_31377	none	STRG.25612.1,STRG.25612.2,blat.proc3829899.chain_2718,blat.proc3829899.chain_2719	4	STRG.25612.3,blat.proc3829899.chain_2717	2
scaffold_19	skipped_exon	12392010	12393051	-	asmbl_21690	none	STRG.22557.3,blat.proc3829897.chain_3268	2	STRG.22557.1,STRG.22557.2,blat.proc3829897.chain_3269,blat.proc3829897.chain_3270,blat.proc3829897.chain_3271,blat.proc3829897.chain_3272	6
scaffold_10	alt_acceptor	9344986	9344987	-	asmbl_3589	none	STRG.12660.1,Trinity_GG_24065_c0_g1_i1,blat.proc3829893.chain_1119	3	STRG.12660.2,STRG.12660.3	2
scaffold_3	ends_in_intron	9800493	9800493	+	asmbl_40194	none	STRG.3450.1,blat.proc3829871.chain_3579	2	STRG.3450.2	1
scaffold_15	retained_exon	3368556	3368688	-	asmbl_15100	none	STRG.18096.2	1	STRG.18096.1	1
scaffold_11	alt_donor	13092994	13092995	+	asmbl_5999,asmbl_6004	none	Trinity_GG_7823_c0_g1_i13,blat.proc3829877.chain_2668,blat.proc3829877.chain_2669,blat.proc3829877.chain_2675	4	STRG.14176.1,STRG.14176.3,blat.proc3829877.chain_2671,blat.proc3829877.chain_2672,blat.proc3829877.chain_2674,blat.proc3829877.chain_2678	6
scaffold_17	alternate_exon	2358091	2358219	+	asmbl_17773	none	blat.proc3829881.chain_854	1	STRG.20017.4,STRG.20017.5,STRG.20017.6	3
scaffold_6	ends_in_intron	1486982	1486982	+	asmbl_46660	none	Trinity_GG_3938_c3_g1_i7	1	STRG.7183.2	1
scaffold_27	spliced_intron	6702554	6703059	-	asmbl_37034	none	STRG.29020.2	1	STRG.29020.1,blat.proc3829901.chain_2189	2
scaffold_20	spliced_intron	5115892	5116021	+	asmbl_25756	none	STRG.23133.1,blat.proc3829883.chain_261	2	Trinity_GG_12767_c0_g1_i2,blat.proc3829883.chain_262	2
scaffold_15	alt_acceptor	15355114	15355115	+	asmbl_14708,asmbl_14710,asmbl_14712	none	STRG.18909.3,Trinity_GG_10368_c0_g1_i7,blat.proc3829879.chain_3500,blat.proc3829879.chain_3505	4	STRG.18909.2,blat.proc3829879.chain_3499,blat.proc3829879.chain_3504	3
scaffold_12	retained_intron	14289988	14290450	-	asmbl_8132,asmbl_8134	none	STRG.15255.3,Trinity_GG_25533_c0_g1_i4,blat.proc3829893.chain_3648,blat.proc3829893.chain_3650	4	STRG.15255.2,blat.proc3829893.chain_3649	2
scaffold_6	alt_acceptor	7849654	7849655	+	asmbl_47023	none	STRG.7662.1	1	STRG.7662.2	1
scaffold_1	starts_in_intron	4917995	4917995	-	asmbl_227	none	blat.proc3829887.chain_171	1	STRG.298.1	1
scaffold_13	spliced_intron	2568046	2569763	+	asmbl_10609,asmbl_10610	none	STRG.15550.1,Trinity_GG_8519_c0_g1_i1,Trinity_GG_8519_c0_g1_i3,blat.proc3829879.chain_189,blat.proc3829879.chain_192	5	blat.proc3829879.chain_188,blat.proc3829879.chain_191,blat.proc3829879.chain_193,blat.proc3829879.chain_195	4
scaffold_14	starts_in_intron	12122993	12122993	-	asmbl_13534	none	STRG.17528.1	1	STRG.17528.2	1
scaffold_8	alternate_exon	15204776	15210657	+	asmbl_52384	none	STRG.10546.2	1	STRG.10546.3	1
scaffold_13	spliced_intron	16460036	16460350	-	asmbl_10273	none	STRG.16689.1,Trinity_GG_26334_c0_g1_i2,blat.proc3829895.chain_1355	3	STRG.16689.2,blat.proc3829895.chain_1356	2
scaffold_22	retained_intron	736233	736408	-	asmbl_29888	none	STRG.24712.1,blat.proc3829899.chain_1774	2	STRG.24712.2,blat.proc3829899.chain_1773	2
scaffold_4	skipped_exon	5651119	5651696	-	asmbl_41354,asmbl_41364	none	STRG.4469.3,blat.proc3829889.chain_607	2	STRG.4469.2,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_608,blat.proc3829889.chain_611,blat.proc3829889.chain_612	6
scaffold_7	alt_acceptor	1456138	1456139	-	asmbl_49553	none	STRG.8637.2	1	STRG.8637.1,blat.proc3829891.chain_1024	2
scaffold_20	starts_in_intron	3997075	3997075	-	asmbl_26637	none	blat.proc3829899.chain_98	1	STRG.23081.1,blat.proc3829899.chain_99	2
scaffold_15	alternate_exon	15347372	15347915	+	asmbl_14701	none	STRG.18908.4,Trinity_GG_10364_c0_g1_i1,blat.proc3829879.chain_3494	3	STRG.18908.2	1
scaffold_7	retained_exon	4931639	4931698	+	asmbl_50650,asmbl_50656,asmbl_50660,asmbl_50662	none	STRG.8834.2,blat.proc3829875.chain_1275,blat.proc3829875.chain_1276,blat.proc3829875.chain_1280,blat.proc3829875.chain_1282	5	STRG.8834.1,blat.proc3829875.chain_1278,blat.proc3829875.chain_1279,blat.proc3829875.chain_1281,blat.proc3829875.chain_1283	5
scaffold_2	alternate_exon	14279466	14281153	+	asmbl_24926,asmbl_24927,asmbl_24928,asmbl_24929,asmbl_24930,asmbl_24931	none	STRG.2425.1,STRG.2425.2,STRG.2425.3,STRG.2425.4,Trinity_GG_1366_c0_g1_i1,blat.proc3829871.chain_2542,blat.proc3829871.chain_2546,blat.proc3829871.chain_2583	8	blat.proc3829871.chain_2543	1
scaffold_13	spliced_intron	6628167	6628496	-	asmbl_9768	none	STRG.15951.1,Trinity_GG_25950_c0_g1_i2,blat.proc3829895.chain_661	3	Trinity_GG_25950_c0_g1_i1,blat.proc3829895.chain_662	2
scaffold_1	starts_in_intron	11627544	11627544	-	asmbl_655	none	Trinity_GG_17396_c0_g1_i3,blat.proc3829887.chain_614	2	STRG.767.1,Trinity_GG_17396_c0_g1_i4,blat.proc3829887.chain_615,blat.proc3829887.chain_617	4
scaffold_11	retained_intron	8100073	8100172	+	asmbl_5690,asmbl_5691	none	Trinity_GG_7614_c0_g1_i2,Trinity_GG_7614_c0_g1_i5,blat.proc3829877.chain_2292,blat.proc3829877.chain_2297	4	STRG.13810.1,STRG.13810.2,STRG.13810.3,STRG.13810.4,Trinity_GG_7614_c0_g1_i1,Trinity_GG_7614_c0_g1_i3,Trinity_GG_7614_c0_g1_i4,Trinity_GG_7614_c0_g1_i6,blat.proc3829877.chain_2293,blat.proc3829877.chain_2294,blat.proc3829877.chain_2295,blat.proc3829877.chain_2296	12
scaffold_13	skipped_exon	5804903	5806487	+	asmbl_10882	none	STRG.15880.4	1	STRG.15880.1,STRG.15880.2,STRG.15880.3,blat.proc3829879.chain_648,blat.proc3829879.chain_649	5
scaffold_15	alternate_exon	10880209	10880486	-	asmbl_15477	none	STRG.18561.3,Trinity_GG_27423_c1_g1_i1,blat.proc3829895.chain_3300	3	STRG.18561.1,STRG.18561.2,blat.proc3829895.chain_3298,blat.proc3829895.chain_3299	4
scaffold_2	starts_in_intron	3770139	3770139	+	asmbl_24333	none	blat.proc3829871.chain_1871	1	STRG.1808.1,blat.proc3829871.chain_1870	2
scaffold_25	starts_in_intron	9940729	9940729	-	asmbl_34503	none	blat.proc3829901.chain_1069	1	STRG.27802.1,STRG.27802.3,blat.proc3829901.chain_1072	3
scaffold_24	starts_in_intron	9078087	9078087	+	asmbl_32497,asmbl_32503	none	blat.proc3829885.chain_72,blat.proc3829885.chain_76	2	STRG.26929.1,STRG.26929.2,Trinity_GG_14897_c0_g1_i2,Trinity_GG_14897_c0_g1_i6,Trinity_GG_14897_c0_g1_i8,Trinity_GG_14897_c0_g1_i9,blat.proc3829885.chain_71,blat.proc3829885.chain_73,blat.proc3829885.chain_74,blat.proc3829885.chain_77	10
scaffold_6	alt_acceptor	15697341	15697342	+	asmbl_47607	none	STRG.8303.1,blat.proc3829875.chain_700	2	STRG.8303.2,blat.proc3829875.chain_699	2
scaffold_10	spliced_intron	4659	4886	+	asmbl_4127	none	STRG.11886.1,blat.proc3829877.chain_613	2	STRG.11886.2,Trinity_GG_6622_c0_g1_i1,blat.proc3829877.chain_612	3
scaffold_28	spliced_intron	3175623	3175744	-	asmbl_37461	none	STRG.29510.1,blat.proc3829901.chain_2571	2	blat.proc3829901.chain_2570	1
scaffold_13	starts_in_intron	6432973	6432973	-	asmbl_9745	none	blat.proc3829895.chain_708,blat.proc3829895.chain_714	2	STRG.15922.1,STRG.15922.2,blat.proc3829895.chain_710,blat.proc3829895.chain_712,blat.proc3829895.chain_713,blat.proc3829895.chain_715,blat.proc3829895.chain_716	7
scaffold_1	skipped_exon	3502214	3503905	-	asmbl_146,asmbl_147,asmbl_148,asmbl_149,asmbl_150,asmbl_151,asmbl_153,asmbl_155,asmbl_156,asmbl_157	none	STRG.217.1,STRG.217.3,blat.proc3829887.chain_114,blat.proc3829887.chain_116,blat.proc3829887.chain_117,blat.proc3829887.chain_118,blat.proc3829887.chain_120,blat.proc3829887.chain_121,blat.proc3829887.chain_122,blat.proc3829887.chain_124,blat.proc3829887.chain_125	11	STRG.217.2,blat.proc3829887.chain_119,blat.proc3829887.chain_123	3
scaffold_13	starts_in_intron	15510894	15510894	+	asmbl_11494	none	STRG.16580.4	1	STRG.16580.3	1
scaffold_19	alt_donor	827889	827890	-	asmbl_21213,asmbl_21215	none	STRG.21862.5,blat.proc3829897.chain_2631	2	STRG.21862.1,STRG.21862.2,blat.proc3829897.chain_2632	3
scaffold_5	retained_exon	7411154	7411201	-	asmbl_45559,asmbl_45560	none	STRG.6135.2,STRG.6135.3	2	STRG.6135.1	1
scaffold_18	alt_acceptor	13150203	13150204	-	asmbl_20193	none	STRG.21746.3	1	STRG.21746.1	1
scaffold_22	starts_in_intron	1005853	1005853	+	asmbl_29211	none	STRG.24742.4	1	STRG.24742.2,STRG.24742.3,Trinity_GG_13691_c0_g1_i10,blat.proc3829883.chain_1807,blat.proc3829883.chain_1808,blat.proc3829883.chain_1810,blat.proc3829883.chain_1812	7
scaffold_27	alt_donor	975977	975978	+	asmbl_35931,asmbl_35937	none	STRG.28576.1,Trinity_GG_15816_c0_g1_i2,Trinity_GG_15816_c0_g1_i5,blat.proc3829885.chain_1617,blat.proc3829885.chain_1619	5	STRG.28576.2,Trinity_GG_15816_c0_g1_i6,blat.proc3829885.chain_1616	3
scaffold_25	alternate_exon	881352	881397	-	asmbl_34000	none	STRG.27122.2,blat.proc3829901.chain_416	2	STRG.27122.1,blat.proc3829901.chain_417	2
scaffold_2	ends_in_intron	2075310	2075310	+	asmbl_24261	none	Trinity_GG_950_c0_g1_i4,blat.proc3829871.chain_1749	2	STRG.1663.1,STRG.1663.2,Trinity_GG_950_c0_g1_i1,Trinity_GG_950_c0_g1_i3,blat.proc3829871.chain_1747,blat.proc3829871.chain_1748	6
scaffold_6	starts_in_intron	13224150	13224150	+	asmbl_47442	none	STRG.8077.2,Trinity_GG_4440_c4_g1_i1,blat.proc3829875.chain_513	3	STRG.8077.1,blat.proc3829875.chain_505,blat.proc3829875.chain_506	3
scaffold_9	starts_in_intron	8028894	8028894	-	asmbl_55083	none	blat.proc3829891.chain_3380	1	STRG.11218.1,STRG.11218.2,blat.proc3829891.chain_3379	3
scaffold_9	alternate_exon	5667037	5667124	+	asmbl_54052	none	blat.proc3829875.chain_3638	1	STRG.11128.1,blat.proc3829875.chain_3636	2
scaffold_3	spliced_intron	14519600	14519705	-	asmbl_39336	none	Trinity_GG_19119_c0_g1_i1,blat.proc3829887.chain_3616	2	Trinity_GG_19119_c0_g1_i4,blat.proc3829887.chain_3618	2
scaffold_20	retained_intron	8002938	8003022	-	asmbl_26872	none	STRG.23335.1,Trinity_GG_30011_c0_g1_i2,blat.proc3829899.chain_331	3	STRG.23335.2	1
scaffold_14	alt_donor	10473803	10473804	+	asmbl_12300	none	STRG.17381.2	1	STRG.17381.1	1
scaffold_2	alt_acceptor	3884011	3884012	-	asmbl_23039	none	STRG.1822.2,blat.proc3829887.chain_1570	2	STRG.1822.1,blat.proc3829887.chain_1569	2
scaffold_10	alt_acceptor	6705954	6705955	-	asmbl_3410	none	STRG.12492.1,blat.proc3829893.chain_977	2	blat.proc3829893.chain_978	1
scaffold_5	starts_in_intron	15621095	15621095	-	asmbl_46089	none	blat.proc3829889.chain_2755	1	STRG.6741.1,blat.proc3829889.chain_2756	2
scaffold_1352	spliced_intron	1914	2398	+	asmbl_11695	none	STRG.30567.1	1	STRG.30567.2	1
scaffold_16	alt_donor	3979126	3979127	-	asmbl_16194,asmbl_16197	none	STRG.19204.2,STRG.19204.3,blat.proc3829897.chain_234	3	STRG.19204.1,blat.proc3829897.chain_233	2
scaffold_12	alt_donor	9231567	9231568	-	asmbl_7786,asmbl_7788,asmbl_7793,asmbl_7794,asmbl_7796,asmbl_7797,asmbl_7799	none	STRG.14912.1,STRG.14912.2,STRG.14912.3,STRG.14912.4,STRG.14912.7,Trinity_GG_25328_c0_g1_i14,blat.proc3829893.chain_3299,blat.proc3829893.chain_3302,blat.proc3829893.chain_3304,blat.proc3829893.chain_3306,blat.proc3829893.chain_3307	11	STRG.14912.5,STRG.14912.6	2
scaffold_13	alternate_exon	357441	357599	-	asmbl_9269,asmbl_9270,asmbl_9273,asmbl_9274	none	Trinity_GG_25667_c0_g1_i10,Trinity_GG_25667_c0_g1_i6,Trinity_GG_25667_c0_g1_i8,blat.proc3829895.chain_167,blat.proc3829895.chain_168,blat.proc3829895.chain_172,blat.proc3829895.chain_174	7	Trinity_GG_25667_c0_g1_i4,Trinity_GG_25667_c0_g1_i5,blat.proc3829895.chain_169,blat.proc3829895.chain_170	4
scaffold_19	alt_acceptor	12973199	12973200	-	asmbl_21792	none	STRG.22606.1	1	STRG.22606.2,STRG.22606.4,STRG.22606.5,Trinity_GG_29578_c0_g1_i1,Trinity_GG_29578_c0_g1_i2,Trinity_GG_29578_c0_g1_i6,Trinity_GG_29578_c0_g1_i8,blat.proc3829897.chain_3318,blat.proc3829897.chain_3320,blat.proc3829897.chain_3324,blat.proc3829897.chain_3325	11
scaffold_3	starts_in_intron	16937006	16937006	-	asmbl_39471	none	blat.proc3829889.chain_11	1	STRG.3938.1,blat.proc3829889.chain_12	2
scaffold_4	alt_donor	7317178	7317179	-	asmbl_41446	none	STRG.4569.1	1	STRG.4569.2	1
scaffold_1	retained_exon	19695156	19695224	-	asmbl_1150	none	STRG.1356.1,blat.proc3829887.chain_1249	2	STRG.1356.2,blat.proc3829887.chain_1248	2
scaffold_14	alt_acceptor	12624812	12624813	-	asmbl_13568,asmbl_13570	none	blat.proc3829895.chain_2329,blat.proc3829895.chain_2332	2	STRG.17566.1,STRG.17566.2,blat.proc3829895.chain_2327,blat.proc3829895.chain_2330,blat.proc3829895.chain_2331	5
scaffold_5	starts_in_intron	10653591	10653591	+	asmbl_44357	none	Trinity_GG_3466_c0_g1_i2,blat.proc3829873.chain_2499	2	STRG.6337.1,blat.proc3829873.chain_2500	2
scaffold_22	alt_donor	11477631	11477632	+	asmbl_29684	none	STRG.25476.2	1	STRG.25476.3,Trinity_GG_14064_c0_g1_i3,blat.proc3829883.chain_2403	3
scaffold_15	alt_acceptor	15242085	15242086	-	asmbl_15781	none	STRG.18898.1,Trinity_GG_27630_c0_g1_i2,blat.proc3829895.chain_3678	3	STRG.18898.2	1
scaffold_20	alt_donor	8167665	8167666	+	asmbl_25904	none	STRG.23350.2	1	STRG.23350.1,Trinity_GG_12869_c0_g1_i2,blat.proc3829883.chain_427	3
scaffold_11	ends_in_intron	5493835	5493835	-	asmbl_6638	none	Trinity_GG_24622_c1_g1_i1,blat.proc3829893.chain_2057	2	STRG.13604.1,Trinity_GG_24622_c0_g1_i3,blat.proc3829893.chain_2053,blat.proc3829893.chain_2056	4
scaffold_9	ends_in_intron	17846982	17846982	-	asmbl_55653	none	Trinity_GG_23577_c0_g1_i3,blat.proc3829893.chain_252	2	STRG.11863.1,blat.proc3829893.chain_253	2
scaffold_6	spliced_intron	13577498	13577850	-	asmbl_48850	none	STRG.8093.4	1	STRG.8093.2	1
scaffold_14	retained_intron	15693744	15694154	-	asmbl_13720	none	STRG.17796.1	1	blat.proc3829895.chain_2522	1
scaffold_11	starts_in_intron	10822189	10822189	+	asmbl_5917	none	Trinity_GG_7743_c0_g1_i2,blat.proc3829877.chain_2535	2	STRG.14042.1,blat.proc3829877.chain_2536	2
scaffold_4	retained_exon	13076259	13076299	+	asmbl_43108	none	STRG.4945.3,blat.proc3829873.chain_1238	2	STRG.4945.4,STRG.4945.5,blat.proc3829873.chain_1240	3
scaffold_6	alternate_exon	14119409	14120513	+	asmbl_47519	none	STRG.8169.1	1	STRG.8169.2	1
scaffold_3	spliced_intron	7708984	7709075	-	asmbl_38927,asmbl_38930,asmbl_38933	none	STRG.3361.1,blat.proc3829887.chain_3172,blat.proc3829887.chain_3175,blat.proc3829887.chain_3177	4	blat.proc3829887.chain_3176	1
scaffold_22	alt_donor	11641428	11641429	-	asmbl_30459	none	STRG.25493.1	1	STRG.25493.2,STRG.25493.4,blat.proc3829899.chain_2578	3
scaffold_28	alternate_exon	5230414	5231709	-	asmbl_37581,asmbl_37583	none	STRG.29650.1,blat.proc3829901.chain_2671,blat.proc3829901.chain_2672	3	Trinity_GG_33578_c0_g1_i6,blat.proc3829901.chain_2675	2
scaffold_5	retained_intron	8791720	8791899	+	asmbl_44237	none	blat.proc3829873.chain_2350	1	STRG.6209.1,STRG.6209.2,blat.proc3829873.chain_2346,blat.proc3829873.chain_2349	4
scaffold_28	retained_intron	2303296	2303372	-	asmbl_37358	none	STRG.29384.2	1	STRG.29384.1	1
scaffold_3	starts_in_intron	14334654	14334654	-	asmbl_39309,asmbl_39311	none	STRG.3779.1,STRG.3779.3,Trinity_GG_19094_c0_g1_i2,Trinity_GG_19094_c0_g1_i4,blat.proc3829887.chain_3554,blat.proc3829887.chain_3555	6	STRG.3779.2,Trinity_GG_19094_c0_g1_i1,blat.proc3829887.chain_3556	3
scaffold_14	spliced_intron	4116419	4116564	+	asmbl_11946	none	STRG.16951.2,Trinity_GG_9333_c0_g1_i7,blat.proc3829879.chain_1689	3	STRG.16951.3,STRG.16951.4,STRG.16951.5,Trinity_GG_9333_c0_g1_i1,Trinity_GG_9333_c0_g1_i3,Trinity_GG_9333_c0_g1_i4,blat.proc3829879.chain_1686,blat.proc3829879.chain_1688,blat.proc3829879.chain_1690	9
scaffold_15	retained_exon	13835383	13835403	-	asmbl_15696	none	STRG.18805.2,Trinity_GG_27570_c0_g1_i1,blat.proc3829895.chain_3552	3	STRG.18805.1,Trinity_GG_27570_c0_g1_i2,blat.proc3829895.chain_3551	3
scaffold_16	skipped_exon	1782813	1783654	+	asmbl_16882	none	blat.proc3829879.chain_3709	1	STRG.19095.1,STRG.19095.3,STRG.19095.4,blat.proc3829879.chain_3708,blat.proc3829879.chain_3712,blat.proc3829879.chain_3713	6
scaffold_17	retained_intron	14627370	14627619	-	asmbl_19488	none	blat.proc3829897.chain_1816	1	STRG.20920.2,STRG.20920.3,blat.proc3829897.chain_1812	3
scaffold_16	starts_in_intron	9556116	9556116	+	asmbl_17291	none	Trinity_GG_10701_c0_g1_i1,blat.proc3829881.chain_415	2	STRG.19542.1,blat.proc3829881.chain_413	2
scaffold_1	spliced_intron	16722860	16722887	+	asmbl_2479	none	STRG.1173.1	1	STRG.1173.2	1
scaffold_2	alternate_exon	1595711	1598373	+	asmbl_24235	none	blat.proc3829871.chain_1669	1	Trinity_GG_905_c0_g1_i6,blat.proc3829871.chain_1665	2
scaffold_24	alt_donor	10484959	10484960	+	asmbl_32574,asmbl_32577,asmbl_32580	none	STRG.27000.3,STRG.27000.4,Trinity_GG_14920_c0_g1_i4,blat.proc3829885.chain_129	4	STRG.27000.5	1
scaffold_9	retained_intron	12305963	12306075	+	asmbl_54410	none	blat.proc3829877.chain_331	1	STRG.11549.1,STRG.11549.2,blat.proc3829877.chain_330	3
scaffold_10	retained_intron	4057996	4058495	-	asmbl_3165	none	STRG.12237.7,Trinity_GG_23849_c2_g1_i1,blat.proc3829893.chain_711,blat.proc3829893.chain_714	4	STRG.12237.2,STRG.12237.4,blat.proc3829893.chain_709,blat.proc3829893.chain_710	4
scaffold_14	retained_intron	3588641	3588755	+	asmbl_11926,asmbl_11928	none	STRG.16927.1,STRG.16927.4,blat.proc3829879.chain_1656	3	STRG.16927.3	1
scaffold_5	retained_intron	9704092	9704702	-	asmbl_45677	none	blat.proc3829889.chain_2370,blat.proc3829889.chain_2373	2	STRG.6283.2	1
scaffold_14	alt_donor	1069987	1069988	+	asmbl_11766	none	STRG.16754.5	1	Trinity_GG_9205_c0_g1_i2,blat.proc3829879.chain_1438	2
scaffold_21	retained_exon	6638698	6638970	+	asmbl_28701	none	STRG.24176.1,blat.proc3829883.chain_1292	2	STRG.24176.2	1
scaffold_19	alt_acceptor	12956143	12956144	-	asmbl_21775,asmbl_21776,asmbl_21777,asmbl_21779	none	STRG.22600.1,Trinity_GG_29572_c0_g1_i4,Trinity_GG_29572_c0_g1_i6,Trinity_GG_29572_c0_g1_i7,blat.proc3829897.chain_3292,blat.proc3829897.chain_3294,blat.proc3829897.chain_3295	7	Trinity_GG_29572_c0_g1_i2,blat.proc3829897.chain_3293	2
scaffold_15	spliced_intron	15355271	15355426	+	asmbl_14710	none	blat.proc3829879.chain_3500	1	STRG.18909.1,STRG.18909.3,Trinity_GG_10368_c0_g1_i7,Trinity_GG_10368_c0_g1_i9,blat.proc3829879.chain_3502,blat.proc3829879.chain_3503,blat.proc3829879.chain_3504,blat.proc3829879.chain_3505	8
scaffold_2	retained_intron	14623015	14623109	+	asmbl_24991	none	blat.proc3829871.chain_2632	1	STRG.2455.1,blat.proc3829871.chain_2633	2
scaffold_24	spliced_intron	10779531	10779624	-	asmbl_33210,asmbl_33211	none	STRG.27021.1,blat.proc3829901.chain_292,blat.proc3829901.chain_294	3	blat.proc3829901.chain_293,blat.proc3829901.chain_296	2
scaffold_16	starts_in_intron	8027051	8027051	-	asmbl_16394	none	Trinity_GG_27922_c0_g1_i2,blat.proc3829897.chain_472	2	STRG.19429.1,STRG.19429.2,Trinity_GG_27922_c0_g2_i1,blat.proc3829897.chain_471,blat.proc3829897.chain_473,blat.proc3829897.chain_474	6
scaffold_17	alternate_exon	10037315	10039411	-	asmbl_19275	none	STRG.20608.6	1	STRG.20608.3	1
scaffold_18	alternate_exon	6778654	6778817	-	asmbl_19953	none	STRG.21372.2	1	STRG.21372.1,blat.proc3829897.chain_2242	2
scaffold_11	ends_in_intron	7604778	7604778	-	asmbl_6755	none	Trinity_GG_24683_c1_g1_i2,blat.proc3829893.chain_2151	2	blat.proc3829893.chain_2150	1
scaffold_16	alt_donor	1510085	1510086	+	asmbl_16871,asmbl_16873	none	STRG.19088.2,blat.proc3829879.chain_3697	2	STRG.19088.3	1
scaffold_5	spliced_intron	13022943	13023169	+	asmbl_44511	none	STRG.6522.1,blat.proc3829873.chain_2618	2	STRG.6522.2,blat.proc3829873.chain_2617	2
scaffold_13	alt_acceptor	15510960	15510961	+	asmbl_11493	none	STRG.16580.3	1	STRG.16580.2	1
scaffold_12	starts_in_intron	14256647	14256647	+	asmbl_9041	none	STRG.15246.2,blat.proc3829877.chain_3699	2	STRG.15246.1,Trinity_GG_8401_c0_g1_i1,blat.proc3829877.chain_3698	3
scaffold_6	alt_donor	13126082	13126083	-	asmbl_48816	none	STRG.8062.1,blat.proc3829891.chain_358	2	STRG.8062.2,blat.proc3829891.chain_357	2
scaffold_5	skipped_exon	17036765	17037141	+	asmbl_44795	none	STRG.6871.2,Trinity_GG_3743_c0_g1_i2,blat.proc3829873.chain_2969	3	STRG.6871.1,Trinity_GG_3743_c0_g1_i1,blat.proc3829873.chain_2968	3
scaffold_17	ends_in_intron	13467478	13467478	-	asmbl_19417	none	STRG.20813.2,blat.proc3829897.chain_1745	2	STRG.20813.1,blat.proc3829897.chain_1744	2
scaffold_27	starts_in_intron	2998993	2998993	+	asmbl_36117	none	blat.proc3829885.chain_1838	1	STRG.28767.1,STRG.28767.2,STRG.28767.3,STRG.28767.4,STRG.28767.5,blat.proc3829885.chain_1839,blat.proc3829885.chain_1841,blat.proc3829885.chain_1842,blat.proc3829885.chain_1843,blat.proc3829885.chain_1847,blat.proc3829885.chain_1849	11
scaffold_12	alt_donor	10611669	10611670	+	asmbl_8917	none	STRG.15029.3,Trinity_GG_8309_c0_g1_i1,blat.proc3829877.chain_3546	3	STRG.15029.2	1
scaffold_12	alt_acceptor	7661359	7661360	+	asmbl_8747	none	STRG.14837.1	1	STRG.14837.2,blat.proc3829877.chain_3340,blat.proc3829877.chain_3341,blat.proc3829877.chain_3342	4
scaffold_15	alt_donor	14324882	14324883	-	asmbl_15729	none	STRG.18855.3	1	Trinity_GG_27599_c0_g1_i7,blat.proc3829895.chain_3600	2
scaffold_13	retained_intron	1229434	1229825	+	asmbl_10514,asmbl_10519	none	STRG.15478.1,STRG.15478.3,Trinity_GG_8526_c1_g1_i2,Trinity_GG_8526_c4_g1_i1,blat.proc3829879.chain_211,blat.proc3829879.chain_214	6	STRG.15478.2	1
scaffold_13	retained_intron	8237956	8238073	-	asmbl_9919	none	blat.proc3829895.chain_899	1	STRG.16101.1,blat.proc3829895.chain_898,blat.proc3829895.chain_901	3
scaffold_8	alternate_exon	11826620	11828873	+	asmbl_52261,asmbl_52262	none	STRG.10379.1,blat.proc3829875.chain_2918	2	STRG.10379.2	1
scaffold_2	ends_in_intron	18954093	18954093	+	asmbl_25287,asmbl_25289	none	Trinity_GG_1522_c0_g1_i11,Trinity_GG_1522_c0_g1_i2	2	STRG.2768.3,Trinity_GG_1522_c0_g1_i6,blat.proc3829871.chain_2879	3
scaffold_5	alt_donor	9717861	9717862	+	asmbl_44303	none	STRG.6280.1,blat.proc3829873.chain_2445	2	STRG.6280.2,blat.proc3829873.chain_2444	2
scaffold_28	starts_in_intron	760844	760844	-	asmbl_37254	none	STRG.29273.2,blat.proc3829901.chain_2376	2	STRG.29273.1,STRG.29273.3,STRG.29273.4	3
scaffold_26	skipped_exon	5657869	5660156	-	asmbl_34886,asmbl_34887,asmbl_34888,asmbl_34890,asmbl_34891	none	STRG.28255.1,STRG.28255.3,blat.proc3829901.chain_1436,blat.proc3829901.chain_1441,blat.proc3829901.chain_1442	5	STRG.28255.2,blat.proc3829901.chain_1438,blat.proc3829901.chain_1439,blat.proc3829901.chain_1443	4
scaffold_2	spliced_intron	15453799	15453902	+	asmbl_25063,asmbl_25064,asmbl_25065,asmbl_25066,asmbl_25068,asmbl_25069,asmbl_25070	none	STRG.2500.1,STRG.2500.2,blat.proc3829871.chain_2679,blat.proc3829871.chain_2680,blat.proc3829871.chain_2681,blat.proc3829871.chain_2682,blat.proc3829871.chain_2684,blat.proc3829871.chain_2685	8	blat.proc3829871.chain_2683	1
scaffold_16	spliced_intron	12642114	12642264	-	asmbl_16577	none	STRG.19744.2,blat.proc3829897.chain_656	2	Trinity_GG_28047_c0_g1_i6,blat.proc3829897.chain_654	2
scaffold_20	alt_donor	1489676	1489677	+	asmbl_25574	none	STRG.22855.1	1	STRG.22855.2,STRG.22855.3,STRG.22855.5	3
scaffold_1	retained_intron	18327108	18327318	+	asmbl_2536	none	blat.proc3829871.chain_1325	1	STRG.1290.1,blat.proc3829871.chain_1326	2
scaffold_10	alt_donor	1629438	1629439	-	asmbl_2983,asmbl_2988	none	STRG.12019.1,blat.proc3829893.chain_456,blat.proc3829893.chain_459	3	STRG.12019.2	1
scaffold_16	alternate_exon	5507286	5508750	-	asmbl_16291	none	Trinity_GG_27832_c1_g1_i3,blat.proc3829897.chain_293	2	blat.proc3829897.chain_295	1
scaffold_26	retained_exon	6351172	6351208	-	asmbl_34952,asmbl_34953	none	STRG.28315.2,STRG.28315.3,blat.proc3829901.chain_1403,blat.proc3829901.chain_1404	4	STRG.28315.4	1
scaffold_15	alt_donor	4964468	4964469	+	asmbl_14118,asmbl_14120,asmbl_14121,asmbl_14126	none	STRG.18193.1,Trinity_GG_9948_c0_g1_i1,Trinity_GG_9948_c0_g1_i3,blat.proc3829879.chain_2760,blat.proc3829879.chain_2761,blat.proc3829879.chain_2762,blat.proc3829879.chain_2764	7	STRG.18193.3,blat.proc3829879.chain_2759,blat.proc3829879.chain_2763	3
scaffold_22	alt_donor	316381	316382	+	asmbl_29133,asmbl_29134,asmbl_29136	none	STRG.24670.2,STRG.24670.3,blat.proc3829883.chain_1728	3	STRG.24670.1,blat.proc3829883.chain_1729,blat.proc3829883.chain_1730,blat.proc3829883.chain_1731,blat.proc3829883.chain_1732	5
scaffold_15	alt_acceptor	15242076	15242077	-	asmbl_15782	none	STRG.18898.2	1	STRG.18898.1,Trinity_GG_27630_c0_g1_i2,blat.proc3829895.chain_3678	3
scaffold_3	starts_in_intron	8176230	8176230	-	asmbl_38976	none	Trinity_GG_18833_c6_g1_i2	1	blat.proc3829887.chain_3128	1
scaffold_15	alt_acceptor	16268560	16268561	-	asmbl_15837	none	STRG.18968.1,Trinity_GG_27665_c0_g1_i1,blat.proc3829895.chain_3731	3	blat.proc3829895.chain_3730	1
scaffold_2	starts_in_intron	16357518	16357518	+	asmbl_25153	none	Trinity_GG_1455_c0_g1_i3,blat.proc3829871.chain_2758	2	STRG.2573.1,blat.proc3829871.chain_2761	2
scaffold_5	alt_acceptor	16283052	16283053	+	asmbl_44735,asmbl_44736	none	Trinity_GG_3715_c0_g1_i5,Trinity_GG_3715_c0_g1_i6,blat.proc3829873.chain_2926,blat.proc3829873.chain_2927	4	Trinity_GG_3715_c0_g1_i3,blat.proc3829873.chain_2925	2
scaffold_14	alt_donor	7027503	7027504	+	asmbl_12104	none	blat.proc3829879.chain_1903	1	STRG.17126.1,Trinity_GG_9449_c0_g1_i5,blat.proc3829879.chain_1904,blat.proc3829879.chain_1905	4
scaffold_10	retained_exon	12898797	12898824	-	asmbl_3743	none	blat.proc3829893.chain_1336	1	STRG.12877.1,blat.proc3829893.chain_1339,blat.proc3829893.chain_1340,blat.proc3829893.chain_1341	4
scaffold_4	retained_intron	16869332	16869415	-	asmbl_41978	none	blat.proc3829889.chain_1280	1	STRG.5279.1,STRG.5279.2,STRG.5279.3,STRG.5279.4,blat.proc3829889.chain_1282	5
scaffold_5	alternate_exon	4630114	4631726	-	asmbl_45352	none	STRG.5909.2,blat.proc3829889.chain_1978	2	STRG.5909.3,Trinity_GG_20341_c1_g1_i1,blat.proc3829889.chain_1979	3
scaffold_1	retained_intron	4389591	4389688	-	asmbl_192	none	Trinity_GG_17153_c0_g1_i1,blat.proc3829887.chain_151	2	STRG.268.1,blat.proc3829887.chain_150	2
scaffold_1	retained_intron	1271968	1272117	-	asmbl_61	none	Trinity_GG_17054_c0_g1_i2,blat.proc3829885.chain_3738	2	STRG.74.1,Trinity_GG_17054_c0_g1_i1,blat.proc3829885.chain_3739	3
scaffold_6	starts_in_intron	13155440	13155440	+	asmbl_47414	none	STRG.8064.2,blat.proc3829875.chain_425	2	STRG.8064.1	1
scaffold_5	alternate_exon	1180596	1180742	-	asmbl_45221	none	STRG.5661.1	1	STRG.5661.2,Trinity_GG_20235_c0_g1_i1,blat.proc3829889.chain_1817	3
scaffold_5	alt_donor	4773760	4773761	-	asmbl_45398	none	STRG.5933.1	1	STRG.5933.3,STRG.5933.4	2
scaffold_19	spliced_intron	6213363	6213463	+	asmbl_22203	none	STRG.22141.1,blat.proc3829881.chain_3090	2	STRG.22141.4,Trinity_GG_12238_c0_g1_i3,blat.proc3829881.chain_3087	3
scaffold_15	retained_intron	4469772	4470220	-	asmbl_15152	none	Trinity_GG_27228_c0_g1_i1,blat.proc3829895.chain_2906	2	STRG.18158.1,Trinity_GG_27228_c0_g1_i2,blat.proc3829895.chain_2905	3
scaffold_16	alt_acceptor	315092	315093	-	asmbl_16023	none	STRG.19011.1,blat.proc3829897.chain_54	2	STRG.19011.2,STRG.19011.3,STRG.19011.4,blat.proc3829897.chain_55	4
scaffold_21	alt_donor	8231065	8231066	-	asmbl_27924	none	STRG.24344.2	1	STRG.24344.1,STRG.24344.4,blat.proc3829899.chain_1446	3
scaffold_23	ends_in_intron	3656412	3656412	+	asmbl_30763	none	STRG.25778.2,Trinity_GG_14190_c0_g1_i3,blat.proc3829883.chain_2611	3	STRG.25778.1,blat.proc3829883.chain_2610	2
scaffold_11	spliced_intron	11069659	11070082	-	asmbl_6994	none	STRG.14060.1,blat.proc3829893.chain_2449	2	blat.proc3829893.chain_2448	1
scaffold_28	alternate_exon	5612156	5612215	-	asmbl_37621	none	STRG.29674.5,Trinity_GG_33655_c0_g1_i1,blat.proc3829901.chain_2808	3	STRG.29674.1,STRG.29674.2,STRG.29674.3,STRG.29674.6,Trinity_GG_33655_c0_g1_i8,Trinity_GG_33655_c0_g1_i9,blat.proc3829901.chain_2806,blat.proc3829901.chain_2807,blat.proc3829901.chain_2809,blat.proc3829901.chain_2810	10
scaffold_5	ends_in_intron	18194004	18194004	+	asmbl_44874	none	Trinity_GG_3811_c0_g2_i1,blat.proc3829873.chain_3077	2	STRG.6949.1,Trinity_GG_3811_c0_g1_i1,blat.proc3829873.chain_3076	3
scaffold_14	skipped_exon	7495217	7496741	+	asmbl_12148	none	STRG.17177.3	1	STRG.17177.1,STRG.17177.2,STRG.17177.4,Trinity_GG_9413_c1_g1_i2,blat.proc3829879.chain_1834,blat.proc3829879.chain_1836,blat.proc3829879.chain_1838	7
scaffold_7	alternate_exon	3335170	3335292	-	asmbl_49602	none	STRG.8726.3,blat.proc3829891.chain_1082	2	STRG.8726.2,blat.proc3829891.chain_1081	2
scaffold_10	starts_in_intron	11877856	11877856	-	asmbl_3701	none	blat.proc3829893.chain_1301	1	STRG.12820.1,STRG.12820.2,STRG.12820.3,blat.proc3829893.chain_1302	4
scaffold_27	retained_intron	6258393	6258607	+	asmbl_36348	none	STRG.28995.1,blat.proc3829885.chain_2098	2	blat.proc3829885.chain_2096	1
scaffold_4	alt_donor	17020779	17020780	-	asmbl_41997	none	blat.proc3829889.chain_1376	1	STRG.5297.1,blat.proc3829889.chain_1372	2
scaffold_8	alt_acceptor	12622960	12622961	-	asmbl_53212	none	STRG.10424.2	1	STRG.10424.1,blat.proc3829891.chain_2562	2
scaffold_19	ends_in_intron	12529445	12529445	-	asmbl_21725	none	Trinity_GG_29543_c0_g1_i2,blat.proc3829897.chain_3219	2	STRG.22563.1,Trinity_GG_29543_c0_g1_i1,blat.proc3829897.chain_3220	3
scaffold_8	alt_donor	8269538	8269539	-	asmbl_52940,asmbl_52941	none	STRG.10099.1,Trinity_GG_22659_c0_g1_i4,blat.proc3829891.chain_2271,blat.proc3829891.chain_2272	4	STRG.10099.2,blat.proc3829891.chain_2270	2
scaffold_4	ends_in_intron	8852114	8852114	+	asmbl_42922	none	blat.proc3829873.chain_1075	1	STRG.4700.1,blat.proc3829873.chain_1077	2
scaffold_1	starts_in_intron	6281208	6281208	-	asmbl_346	none	blat.proc3829887.chain_332	1	STRG.425.1,STRG.425.2,STRG.425.3,STRG.425.4,STRG.425.5,blat.proc3829887.chain_325,blat.proc3829887.chain_326,blat.proc3829887.chain_328,blat.proc3829887.chain_330,blat.proc3829887.chain_333,blat.proc3829887.chain_334	11
scaffold_10	retained_exon	7504235	7504270	+	asmbl_4559	none	STRG.12537.1,blat.proc3829877.chain_1135	2	blat.proc3829877.chain_1136	1
scaffold_7	alt_donor	9716642	9716643	+	asmbl_50973	none	STRG.9150.2,blat.proc3829875.chain_1618	2	STRG.9150.1,blat.proc3829875.chain_1617	2
scaffold_28	alternate_exon	3220063	3220096	+	asmbl_38151	none	STRG.29512.2	1	STRG.29512.1	1
scaffold_12	retained_intron	10175034	10175126	+	asmbl_8872	none	STRG.14974.1,Trinity_GG_8283_c0_g1_i1,blat.proc3829877.chain_3491	3	STRG.14974.2	1
scaffold_12	alternate_exon	4752949	4753842	+	asmbl_8578,asmbl_8579	none	STRG.14640.2,Trinity_GG_8048_c0_g1_i5,blat.proc3829877.chain_3063,blat.proc3829877.chain_3065	4	STRG.14640.1,blat.proc3829877.chain_3064	2
scaffold_1	spliced_intron	12788561	12788665	-	asmbl_770,asmbl_771,asmbl_772	none	STRG.898.1,STRG.898.3,blat.proc3829887.chain_767,blat.proc3829887.chain_769	4	STRG.898.2,blat.proc3829887.chain_770	2
scaffold_8	retained_exon	10239507	10239563	+	asmbl_52151,asmbl_52155	none	STRG.10282.1,blat.proc3829875.chain_2790,blat.proc3829875.chain_2791	3	STRG.10282.2,blat.proc3829875.chain_2792	2
scaffold_1	alt_acceptor	16715908	16715909	-	asmbl_1011,asmbl_1014	none	STRG.1175.5,STRG.1175.6,blat.proc3829887.chain_1050	3	STRG.1175.2,STRG.1175.3,STRG.1175.4,blat.proc3829887.chain_1051	4
scaffold_27	alt_donor	3093280	3093281	-	asmbl_36839,asmbl_36840	none	STRG.28775.1,STRG.28775.4,blat.proc3829901.chain_1946,blat.proc3829901.chain_1947	4	STRG.28775.3,blat.proc3829901.chain_1951	2
scaffold_7	skipped_exon	8186128	8187038	+	asmbl_50848	none	STRG.9041.1,blat.proc3829875.chain_1474	2	STRG.9041.2,blat.proc3829875.chain_1473	2
scaffold_22	starts_in_intron	6867174	6867174	+	asmbl_29422	none	Trinity_GG_13831_c1_g1_i1,blat.proc3829883.chain_2056	2	STRG.24989.1,blat.proc3829883.chain_2057	2
scaffold_5	alt_acceptor	16792927	16792928	-	asmbl_46157	none	STRG.6861.3	1	STRG.6861.2,blat.proc3829889.chain_2904	2
scaffold_20	alternate_exon	8345671	8345701	-	asmbl_26900,asmbl_26905	none	STRG.23364.3,blat.proc3829899.chain_432,blat.proc3829899.chain_435	3	STRG.23364.1,blat.proc3829899.chain_433,blat.proc3829899.chain_434	3
scaffold_22	retained_exon	686343	686402	+	asmbl_29173,asmbl_29174	none	STRG.24704.1,Trinity_GG_13656_c0_g1_i1,blat.proc3829883.chain_1754	3	STRG.24704.2,Trinity_GG_13656_c0_g1_i2,blat.proc3829883.chain_1755	3
scaffold_2	retained_intron	7923087	7923870	-	asmbl_23317	none	blat.proc3829887.chain_2032	1	STRG.2092.1,STRG.2092.2,blat.proc3829887.chain_2033,blat.proc3829887.chain_2034,blat.proc3829887.chain_2036	5
scaffold_13	spliced_intron	16284302	16284439	+	asmbl_11546	none	STRG.16672.2,blat.proc3829879.chain_1373	2	STRG.16672.1,Trinity_GG_9162_c0_g1_i4,blat.proc3829879.chain_1370	3
scaffold_24	alternate_exon	2521131	2524103	-	asmbl_32783	none	blat.proc3829899.chain_3519	1	blat.proc3829899.chain_3520	1
scaffold_2	retained_intron	7938372	7939699	+	asmbl_24634	none	Trinity_GG_1149_c0_g1_i2,Trinity_GG_1149_c0_g1_i4,blat.proc3829871.chain_2100,blat.proc3829871.chain_2102	4	STRG.2090.1,Trinity_GG_1149_c0_g1_i1,Trinity_GG_1149_c0_g1_i3,Trinity_GG_1149_c0_g1_i5,blat.proc3829871.chain_2101,blat.proc3829871.chain_2103,blat.proc3829871.chain_2104	7
scaffold_17	skipped_exon	5071670	5072556	+	asmbl_17930,asmbl_17932,asmbl_17935	none	STRG.20221.2,STRG.20221.5,STRG.20221.6,Trinity_GG_11042_c0_g1_i3,blat.proc3829881.chain_968,blat.proc3829881.chain_970	6	STRG.20221.1,STRG.20221.3,STRG.20221.4,STRG.20221.7,Trinity_GG_11042_c0_g1_i2,blat.proc3829881.chain_969,blat.proc3829881.chain_971	7
scaffold_11	starts_in_intron	17070288	17070288	-	asmbl_7223	none	blat.proc3829893.chain_2781	1	STRG.14359.1,STRG.14359.2,STRG.14359.3,blat.proc3829893.chain_2779,blat.proc3829893.chain_2780	5
scaffold_20	alt_acceptor	6746910	6746911	+	asmbl_25827	none	STRG.23237.1,blat.proc3829883.chain_335	2	STRG.23237.2	1
scaffold_8	alt_acceptor	6904346	6904347	+	asmbl_51953,asmbl_51959,asmbl_51960	none	STRG.10042.1,STRG.10042.2,blat.proc3829875.chain_2536,blat.proc3829875.chain_2541	4	STRG.10042.3	1
scaffold_26	alternate_exon	1979962	1980020	+	asmbl_35257	none	STRG.27925.2	1	STRG.27925.1	1
scaffold_8	alt_acceptor	8651671	8651672	+	asmbl_52005	none	STRG.10122.1	1	STRG.10122.2	1
scaffold_28	retained_exon	1434807	1434860	-	asmbl_37313,asmbl_37314	none	STRG.29325.2,STRG.29325.3,blat.proc3829901.chain_2399	3	STRG.29325.1,blat.proc3829901.chain_2398	2
scaffold_28	alternate_exon	3008711	3008745	-	asmbl_37448	none	Trinity_GG_33537_c0_g1_i2	1	STRG.29479.1,blat.proc3829901.chain_2601	2
scaffold_11	retained_intron	262676	262775	-	asmbl_6365	none	blat.proc3829893.chain_1719	1	STRG.13257.1,blat.proc3829893.chain_1718,blat.proc3829893.chain_1720	3
scaffold_5	retained_intron	14261743	14261868	+	asmbl_44581	none	Trinity_GG_3625_c0_g1_i7,blat.proc3829873.chain_2766	2	STRG.6629.3,blat.proc3829873.chain_2762,blat.proc3829873.chain_2765,blat.proc3829873.chain_2769	4
scaffold_4	retained_intron	16932301	16932423	-	asmbl_41988	none	STRG.5285.2	1	STRG.5285.1	1
scaffold_21	starts_in_intron	11261089	11261089	-	asmbl_28134	none	Trinity_GG_30772_c0_g1_i1,blat.proc3829899.chain_1741	2	STRG.24586.1,Trinity_GG_30772_c0_g1_i3,Trinity_GG_30772_c0_g1_i4,Trinity_GG_30772_c0_g1_i5,blat.proc3829899.chain_1742,blat.proc3829899.chain_1743,blat.proc3829899.chain_1744	7
scaffold_1325	alt_acceptor	2029	2030	+	asmbl_11685,asmbl_11686	none	STRG.30565.1,STRG.30565.3	2	STRG.30565.4	1
scaffold_27	starts_in_intron	1958580	1958580	+	asmbl_36008	none	Trinity_GG_15864_c1_g1_i1,blat.proc3829885.chain_1697	2	STRG.28656.1,STRG.28656.2,STRG.28656.3,blat.proc3829885.chain_1692,blat.proc3829885.chain_1693,blat.proc3829885.chain_1694,blat.proc3829885.chain_1696	7
scaffold_8	retained_intron	16392727	16393145	-	asmbl_53395,asmbl_53396,asmbl_53398	none	blat.proc3829891.chain_2684,blat.proc3829891.chain_2685,blat.proc3829891.chain_2691	3	STRG.10619.1,STRG.10619.2,Trinity_GG_22871_c0_g1_i9,blat.proc3829891.chain_2683,blat.proc3829891.chain_2686,blat.proc3829891.chain_2687,blat.proc3829891.chain_2688,blat.proc3829891.chain_2689,blat.proc3829891.chain_2690	9
scaffold_23	starts_in_intron	6859640	6859640	-	asmbl_31704,asmbl_31705	none	STRG.26000.2,Trinity_GG_31545_c0_g1_i20,blat.proc3829899.chain_3089	3	STRG.26000.3	1
scaffold_8	retained_intron	18249988	18250262	-	asmbl_53534,asmbl_53536,asmbl_53541	none	STRG.10723.2,STRG.10723.5,blat.proc3829891.chain_2919,blat.proc3829891.chain_2922	4	STRG.10723.1,blat.proc3829891.chain_2924,blat.proc3829891.chain_2925	3
scaffold_2	alternate_exon	15294502	15295172	+	asmbl_25050	none	STRG.2478.1,blat.proc3829871.chain_2505	2	STRG.2478.2	1
scaffold_3	retained_exon	13986481	13986906	-	asmbl_39268	none	STRG.3738.1,blat.proc3829887.chain_3523	2	STRG.3738.2,blat.proc3829887.chain_3522	2
scaffold_17	alternate_exon	8831313	8831387	-	asmbl_19167,asmbl_19170	none	STRG.20484.1,blat.proc3829897.chain_1369,blat.proc3829897.chain_1370	3	STRG.20484.2	1
scaffold_17	alt_acceptor	10014790	10014791	+	asmbl_18276	none	STRG.20604.1,Trinity_GG_11292_c0_g1_i2	2	STRG.20604.2,Trinity_GG_11292_c0_g1_i1	2
scaffold_5	retained_intron	19351640	19352041	-	asmbl_46276	none	blat.proc3829889.chain_2997	1	STRG.7024.1,STRG.7024.2,blat.proc3829889.chain_2998	3
scaffold_1	alt_acceptor	5731990	5731991	-	asmbl_295	none	STRG.379.2,blat.proc3829887.chain_260	2	STRG.379.1,Trinity_GG_17221_c0_g1_i4,blat.proc3829887.chain_257,blat.proc3829887.chain_258,blat.proc3829887.chain_259	5
scaffold_12	alt_acceptor	15678894	15678895	-	asmbl_8232,asmbl_8233	none	STRG.15344.1,STRG.15344.2,blat.proc3829895.chain_20,blat.proc3829895.chain_22	4	STRG.15344.4,STRG.15344.5,blat.proc3829895.chain_21	3
scaffold_2	retained_intron	2542873	2542935	-	asmbl_22925,asmbl_22926,asmbl_22928	none	STRG.1696.1,STRG.1696.3,blat.proc3829887.chain_1538,blat.proc3829887.chain_1540	4	STRG.1696.2	1
scaffold_3	starts_in_intron	1470927	1470927	+	asmbl_39806	none	Trinity_GG_1668_c0_g1_i1,blat.proc3829871.chain_3115	2	Trinity_GG_1668_c0_g1_i2,blat.proc3829871.chain_3114	2
scaffold_5	alt_donor	18222670	18222671	+	asmbl_44877,asmbl_44880,asmbl_44881	none	STRG.6950.3,STRG.6950.4,blat.proc3829873.chain_3088	3	STRG.6950.1,STRG.6950.2,STRG.6950.5,blat.proc3829873.chain_3089	4
scaffold_11	alternate_exon	9185245	9186868	-	asmbl_6903	none	STRG.13951.2,Trinity_GG_24785_c0_g1_i1,blat.proc3829893.chain_2344	3	STRG.13951.1,Trinity_GG_24785_c0_g1_i2,blat.proc3829893.chain_2345	3
scaffold_17	alternate_exon	2629779	2630005	+	asmbl_17799,asmbl_17800,asmbl_17805	none	STRG.20044.1,STRG.20044.2,STRG.20044.4,Trinity_GG_10982_c0_g1_i4,blat.proc3829881.chain_875,blat.proc3829881.chain_876	6	Trinity_GG_10982_c0_g1_i2,blat.proc3829881.chain_878	2
scaffold_27	ends_in_intron	6182621	6182621	+	asmbl_36340	none	blat.proc3829885.chain_2103	1	STRG.28993.1,STRG.28993.2,STRG.28993.3,STRG.28993.4,STRG.28993.5	5
scaffold_10	alt_acceptor	9375921	9375922	+	asmbl_4649	none	blat.proc3829877.chain_1199	1	STRG.12680.1	1
scaffold_9	starts_in_intron	13305598	13305598	-	asmbl_55389	none	STRG.11618.3,blat.proc3829891.chain_3713	2	STRG.11618.1,STRG.11618.2,blat.proc3829891.chain_3709	3
scaffold_8	alt_acceptor	9374720	9374721	-	asmbl_53020,asmbl_53022,asmbl_53023,asmbl_53026,asmbl_53027	none	STRG.10194.3,STRG.10194.4,STRG.10194.5,blat.proc3829891.chain_2355,blat.proc3829891.chain_2356,blat.proc3829891.chain_2358	6	STRG.10194.6	1
scaffold_2	alternate_exon	14019102	14019204	+	asmbl_24904,asmbl_24905	none	STRG.2396.3,blat.proc3829871.chain_2494	2	STRG.2396.1,STRG.2396.2,Trinity_GG_1338_c0_g1_i2,Trinity_GG_1338_c0_g1_i4,blat.proc3829871.chain_2492,blat.proc3829871.chain_2493	6
scaffold_7	starts_in_intron	8626599	8626599	-	asmbl_49833	none	blat.proc3829891.chain_1346	1	STRG.9090.1,blat.proc3829891.chain_1345	2
scaffold_4	spliced_intron	17964335	17964393	-	asmbl_42086	none	blat.proc3829889.chain_1444	1	STRG.5396.1	1
scaffold_1	retained_intron	12452547	12452641	+	asmbl_2211	none	blat.proc3829871.chain_947	1	STRG.857.1,STRG.857.2,blat.proc3829871.chain_949	3
scaffold_14	retained_intron	8651388	8651714	-	asmbl_13315	none	blat.proc3829895.chain_2013	1	STRG.17285.1,blat.proc3829895.chain_2014	2
scaffold_11	spliced_intron	13593399	13593726	-	asmbl_7125,asmbl_7126	none	blat.proc3829893.chain_2655,blat.proc3829893.chain_2656	2	STRG.14205.1,Trinity_GG_24961_c0_g1_i2,blat.proc3829893.chain_2657	3
scaffold_16	alt_acceptor	9556335	9556336	+	asmbl_17292	none	Trinity_GG_10701_c0_g1_i3,blat.proc3829881.chain_414	2	STRG.19542.1,Trinity_GG_10701_c0_g1_i1,blat.proc3829881.chain_413,blat.proc3829881.chain_415	4
scaffold_12	retained_intron	9855571	9855735	-	asmbl_7826	none	STRG.14941.1,blat.proc3829893.chain_3329	2	blat.proc3829893.chain_3328	1
scaffold_5	alt_acceptor	9086575	9086576	+	asmbl_44259,asmbl_44262,asmbl_44263,asmbl_44264,asmbl_44265,asmbl_44266,asmbl_44268,asmbl_44269,asmbl_44271	none	STRG.6237.1,STRG.6237.4,STRG.6237.5,blat.proc3829873.chain_2418,blat.proc3829873.chain_2419,blat.proc3829873.chain_2421,blat.proc3829873.chain_2422,blat.proc3829873.chain_2423,blat.proc3829873.chain_2424,blat.proc3829873.chain_2426	10	STRG.6237.2,STRG.6237.3,Trinity_GG_3425_c0_g1_i4,blat.proc3829873.chain_2425	4
scaffold_6	alternate_exon	7939612	7939715	-	asmbl_48453	none	STRG.7666.4	1	STRG.7666.1,STRG.7666.2,STRG.7666.3,blat.proc3829889.chain_3701,blat.proc3829889.chain_3702,blat.proc3829889.chain_3703,blat.proc3829889.chain_3704,blat.proc3829889.chain_3706	8
scaffold_23	skipped_exon	5617751	5620236	-	asmbl_31644,asmbl_31650	none	STRG.25917.4,Trinity_GG_31507_c0_g2_i3,blat.proc3829899.chain_3027	3	STRG.25917.2,STRG.25917.3,blat.proc3829899.chain_3024,blat.proc3829899.chain_3025,blat.proc3829899.chain_3026	5
scaffold_12	retained_exon	12308728	12308781	+	asmbl_8951,asmbl_8954,asmbl_8955	none	STRG.15117.4,STRG.15117.6,blat.proc3829877.chain_3594	3	STRG.15117.1,STRG.15117.2,blat.proc3829877.chain_3596	3
scaffold_3	spliced_intron	5926294	5926496	-	asmbl_38826,asmbl_38827,asmbl_38828,asmbl_38830	none	STRG.3248.1,blat.proc3829887.chain_2990,blat.proc3829887.chain_2991,blat.proc3829887.chain_2992,blat.proc3829887.chain_2994	5	blat.proc3829887.chain_2993	1
scaffold_10	retained_intron	3065795	3066072	-	asmbl_3071	none	blat.proc3829893.chain_573	1	STRG.12119.1,Trinity_GG_23763_c0_g1_i2,blat.proc3829893.chain_569	3
scaffold_1	alternate_exon	13883596	13883663	-	asmbl_859	none	STRG.993.3,blat.proc3829887.chain_866	2	STRG.993.1,STRG.993.2,STRG.993.4,STRG.993.5,blat.proc3829887.chain_867,blat.proc3829887.chain_868	6
scaffold_28	alt_acceptor	3863126	3863127	-	asmbl_37506	none	STRG.29560.1	1	STRG.29560.2	1
scaffold_9	starts_in_intron	4939016	4939016	+	asmbl_53958	none	Trinity_GG_6134_c2_g1_i2,blat.proc3829875.chain_3490	2	Trinity_GG_6134_c2_g1_i1,blat.proc3829875.chain_3489	2
scaffold_6	spliced_intron	10958023	10958151	-	asmbl_48661	none	STRG.7907.1,blat.proc3829891.chain_73	2	blat.proc3829891.chain_72	1
scaffold_19	alt_acceptor	3684939	3684940	+	asmbl_22132,asmbl_22136,asmbl_22137	none	STRG.22046.1,STRG.22046.6,STRG.22046.7	3	STRG.22046.8,blat.proc3829881.chain_3002	2
scaffold_5	alt_acceptor	9812035	9812036	+	asmbl_44312,asmbl_44313	none	STRG.6289.1,STRG.6289.2,blat.proc3829873.chain_2411,blat.proc3829873.chain_2412	4	STRG.6289.4,STRG.6289.5	2
scaffold_5	starts_in_intron	18193294	18193294	+	asmbl_44874	none	Trinity_GG_3811_c0_g2_i1,blat.proc3829873.chain_3077	2	STRG.6949.1,Trinity_GG_3811_c0_g1_i1,blat.proc3829873.chain_3076	3
scaffold_28	spliced_intron	9641239	9641325	+	asmbl_38492	none	STRG.29969.1,Trinity_GG_16597_c0_g1_i2,Trinity_GG_34129_c0_g1_i1,blat.proc3829885.chain_3052,blat.proc3829901.chain_3544	5	STRG.29969.2	1
scaffold_8	ends_in_intron	8186036	8186036	-	asmbl_52938,asmbl_52939	none	STRG.10094.3,STRG.10094.4	2	STRG.10094.2	1
scaffold_11	retained_intron	3697980	3698259	+	asmbl_5415	none	Trinity_GG_7399_c0_g1_i1,blat.proc3829877.chain_1951	2	STRG.13477.2	1
scaffold_10	alternate_exon	636020	636512	-	asmbl_2892	none	STRG.11933.1,blat.proc3829893.chain_378	2	STRG.11933.2,blat.proc3829893.chain_377	2
scaffold_2	ends_in_intron	2454850	2454850	-	asmbl_22922	none	blat.proc3829887.chain_1529	1	STRG.1690.1,STRG.1690.3,blat.proc3829887.chain_1531	3
scaffold_1	spliced_intron	6284662	6285080	-	asmbl_343,asmbl_345,asmbl_347,asmbl_348,asmbl_350	none	STRG.425.1,STRG.425.3,STRG.425.6,Trinity_GG_17251_c0_g1_i12,blat.proc3829887.chain_325,blat.proc3829887.chain_328,blat.proc3829887.chain_335	7	STRG.425.7,Trinity_GG_17251_c0_g1_i9,blat.proc3829887.chain_331	3
scaffold_5	skipped_exon	4683007	4684210	-	asmbl_45370,asmbl_45377,asmbl_45380	none	STRG.5919.1,blat.proc3829889.chain_2029,blat.proc3829889.chain_2030,blat.proc3829889.chain_2035	4	blat.proc3829889.chain_2027,blat.proc3829889.chain_2028,blat.proc3829889.chain_2032,blat.proc3829889.chain_2033	4
scaffold_1	starts_in_intron	16740044	16740044	+	asmbl_2486	none	blat.proc3829871.chain_1196	1	STRG.1177.2,blat.proc3829871.chain_1198	2
scaffold_4	spliced_intron	4912509	4913152	+	asmbl_42645	none	STRG.4386.2	1	STRG.4386.1,STRG.4386.3,Trinity_GG_2443_c2_g1_i1,blat.proc3829873.chain_780,blat.proc3829873.chain_782	5
scaffold_4	alt_donor	16871829	16871830	-	asmbl_41981	none	STRG.5279.4	1	STRG.5279.1,STRG.5279.2,STRG.5279.3,blat.proc3829889.chain_1280,blat.proc3829889.chain_1282	5
scaffold_13	spliced_intron	5136	5411	+	asmbl_10415,asmbl_10422,asmbl_10423	none	STRG.15408.2,STRG.15408.3,Trinity_GG_8474_c0_g1_i2,Trinity_GG_8474_c0_g1_i4,blat.proc3829879.chain_74,blat.proc3829879.chain_76	6	STRG.15408.1,Trinity_GG_8474_c0_g1_i1,Trinity_GG_8474_c0_g1_i6,Trinity_GG_8474_c0_g1_i7,Trinity_GG_8474_c0_g1_i8,blat.proc3829879.chain_71,blat.proc3829879.chain_72,blat.proc3829879.chain_75,blat.proc3829879.chain_78	9
scaffold_17	retained_exon	2355383	2358219	+	asmbl_17765	none	STRG.20017.1,blat.proc3829881.chain_852	2	STRG.20017.6	1
scaffold_21	ends_in_intron	2473286	2473286	-	asmbl_27486	none	Trinity_GG_30292_c0_g1_i5,blat.proc3829899.chain_900	2	STRG.23863.1,STRG.23863.2,STRG.23863.4,blat.proc3829899.chain_898,blat.proc3829899.chain_899,blat.proc3829899.chain_901,blat.proc3829899.chain_902,blat.proc3829899.chain_904,blat.proc3829899.chain_905,blat.proc3829899.chain_906	10
scaffold_25	alt_acceptor	6311974	6311975	-	asmbl_34323	none	STRG.27517.2,blat.proc3829901.chain_827	2	STRG.27517.1	1
scaffold_8	retained_intron	6160729	6160833	-	asmbl_52854	none	STRG.10012.3,blat.proc3829891.chain_2216	2	STRG.10012.1,Trinity_GG_22628_c0_g1_i1,blat.proc3829891.chain_2213,blat.proc3829891.chain_2214,blat.proc3829891.chain_2218	5
scaffold_5	alt_acceptor	8538846	8538847	-	asmbl_45595,asmbl_45598,asmbl_45601,asmbl_45602	none	STRG.6191.1,STRG.6191.4,blat.proc3829889.chain_2246,blat.proc3829889.chain_2247,blat.proc3829889.chain_2248,blat.proc3829889.chain_2250	6	STRG.6191.3,blat.proc3829889.chain_2253	2
scaffold_3	retained_intron	13419144	13419405	-	asmbl_39212,asmbl_39213	none	STRG.3690.1,STRG.3690.3,Trinity_GG_19014_c0_g1_i4,blat.proc3829887.chain_3422	4	STRG.3690.2,STRG.3690.5	2
scaffold_23	retained_intron	2126799	2127196	-	asmbl_31408	none	STRG.25661.2,Trinity_GG_31355_c0_g1_i2,blat.proc3829899.chain_2760	3	STRG.25661.1,Trinity_GG_31355_c0_g1_i1,Trinity_GG_31355_c0_g1_i4,blat.proc3829899.chain_2759,blat.proc3829899.chain_2761	5
scaffold_1	alternate_exon	17525054	17525113	-	asmbl_1035	none	STRG.1213.1	1	STRG.1212.2	1
scaffold_11	spliced_intron	4760580	4761026	-	asmbl_6605,asmbl_6608	none	STRG.13565.1,blat.proc3829893.chain_2021,blat.proc3829893.chain_2023	3	blat.proc3829893.chain_2020	1
scaffold_4	retained_exon	7151690	7151997	+	asmbl_42806	none	STRG.4558.5	1	STRG.4558.2,STRG.4558.3	2
scaffold_17	starts_in_intron	2706405	2706405	+	asmbl_17818	none	blat.proc3829881.chain_819	1	STRG.20057.1,STRG.20057.2,blat.proc3829881.chain_818	3
scaffold_18	alternate_exon	9800549	9800624	-	asmbl_20121	none	STRG.21577.2	1	STRG.21577.1,blat.proc3829897.chain_2419	2
scaffold_17	spliced_intron	11567714	11567734	+	asmbl_18363	none	blat.proc3829881.chain_1479	1	STRG.20693.1,STRG.20693.3,STRG.20693.4	3
scaffold_7	alt_acceptor	2957937	2957938	-	asmbl_49590	none	STRG.8708.2,blat.proc3829891.chain_1056	2	STRG.8708.1,blat.proc3829891.chain_1055	2
scaffold_21	starts_in_intron	7510512	7510512	-	asmbl_27856	none	blat.proc3829899.chain_1351	1	STRG.24268.1,blat.proc3829899.chain_1352	2
scaffold_27	alt_acceptor	937869	937870	-	asmbl_36673	none	STRG.28566.1,Trinity_GG_32993_c0_g1_i1,blat.proc3829901.chain_1767	3	STRG.28566.2	1
scaffold_21	starts_in_intron	6398567	6398567	+	asmbl_28656	none	blat.proc3829883.chain_1197	1	STRG.24152.1,blat.proc3829883.chain_1199,blat.proc3829883.chain_1200,blat.proc3829883.chain_1201	4
scaffold_7	alt_acceptor	7615053	7615054	-	asmbl_49764,asmbl_49767	none	STRG.9004.1,STRG.9004.2,Trinity_GG_22076_c0_g1_i2,blat.proc3829891.chain_1230	4	STRG.9004.3,STRG.9004.4,Trinity_GG_22076_c0_g1_i1,blat.proc3829891.chain_1229	4
scaffold_22	alternate_exon	4279982	4286223	-	asmbl_30005	none	STRG.24837.3	1	STRG.24837.6,Trinity_GG_30888_c2_g1_i1,blat.proc3829899.chain_1958	3
scaffold_701	alternate_exon	4215	4874	-	asmbl_51552,asmbl_51553	none	STRG.30415.1,STRG.30415.2,blat.proc3829901.chain_3452,blat.proc3829901.chain_3453	4	STRG.30415.3	1
scaffold_13	alternate_exon	8896223	8896669	-	asmbl_9955	none	STRG.16142.2	1	STRG.16142.1,blat.proc3829895.chain_918	2
scaffold_20	alt_acceptor	11078627	11078628	-	asmbl_27054	none	STRG.23611.1,blat.proc3829899.chain_622	2	STRG.23611.2,blat.proc3829899.chain_624,blat.proc3829899.chain_626	3
scaffold_21	alt_acceptor	11346202	11346203	-	asmbl_28147	none	STRG.24599.2	1	STRG.24599.1,STRG.24599.3	2
scaffold_5	alt_donor	18220745	18220746	+	asmbl_44881	none	STRG.6950.3	1	STRG.6950.1,STRG.6950.2,STRG.6950.4,STRG.6950.5,blat.proc3829873.chain_3088,blat.proc3829873.chain_3089	6
scaffold_12	alt_donor	14041156	14041157	+	asmbl_9010,asmbl_9012	none	STRG.15215.1,STRG.15215.2,Trinity_GG_8373_c0_g1_i2,blat.proc3829877.chain_3650	4	Trinity_GG_8373_c0_g1_i1,blat.proc3829877.chain_3649	2
scaffold_7	alternate_exon	18394449	18394936	-	asmbl_50289	none	Trinity_GG_22427_c0_g1_i11,blat.proc3829891.chain_1875	2	Trinity_GG_22427_c0_g1_i15,Trinity_GG_22427_c0_g1_i5,blat.proc3829891.chain_1867,blat.proc3829891.chain_1874	4
scaffold_6	alt_donor	12629256	12629257	-	asmbl_48769,asmbl_48774	none	STRG.8013.1,Trinity_GG_21546_c0_g1_i2,blat.proc3829891.chain_253,blat.proc3829891.chain_256	4	STRG.8013.2,Trinity_GG_21546_c0_g1_i1,blat.proc3829891.chain_254,blat.proc3829891.chain_257	4
scaffold_4	retained_intron	6304956	6305145	+	asmbl_42719,asmbl_42720,asmbl_42724,asmbl_42725,asmbl_42726	none	Trinity_GG_2497_c0_g1_i2,Trinity_GG_2497_c0_g1_i6,Trinity_GG_2497_c0_g1_i8,blat.proc3829873.chain_863,blat.proc3829873.chain_867,blat.proc3829873.chain_868,blat.proc3829873.chain_871	7	STRG.4502.1,STRG.4502.2,Trinity_GG_2497_c0_g1_i1,Trinity_GG_2497_c0_g1_i9,blat.proc3829873.chain_865,blat.proc3829873.chain_866,blat.proc3829873.chain_870	7
scaffold_13	alternate_exon	6042165	6047202	-	asmbl_9726	none	STRG.15900.4,blat.proc3829895.chain_629	2	STRG.15900.5,blat.proc3829895.chain_625	2
scaffold_25	alternate_exon	10080820	10080890	+	asmbl_33848	none	STRG.27792.2	1	STRG.27792.1,Trinity_GG_15338_c0_g1_i1,blat.proc3829885.chain_809	3
scaffold_12	alt_donor	12015149	12015150	+	asmbl_8936	none	STRG.15103.1,Trinity_GG_8284_c0_g1_i3,blat.proc3829877.chain_3495	3	STRG.15103.2,Trinity_GG_8284_c0_g1_i7,blat.proc3829877.chain_3496	3
scaffold_2	alternate_exon	5073826	5073861	-	asmbl_23149	none	STRG.1922.2,blat.proc3829887.chain_1822	2	STRG.1922.3	1
scaffold_24	ends_in_intron	6226839	6226839	-	asmbl_32936	none	Trinity_GG_31899_c2_g1_i1,blat.proc3829899.chain_3698	2	STRG.26664.1,STRG.26664.2,Trinity_GG_31899_c0_g1_i6,Trinity_GG_31899_c0_g1_i9,blat.proc3829899.chain_3686,blat.proc3829899.chain_3688,blat.proc3829899.chain_3690,blat.proc3829899.chain_3692,blat.proc3829899.chain_3695	9
scaffold_16	alt_acceptor	673453	673454	+	asmbl_16820,asmbl_16822	none	STRG.19032.1,STRG.19032.2,Trinity_GG_10438_c0_g1_i3,blat.proc3829879.chain_3650,blat.proc3829879.chain_3651,blat.proc3829879.chain_3653	6	STRG.19032.3,STRG.19032.4,Trinity_GG_10438_c0_g1_i2,Trinity_GG_10438_c0_g1_i7,blat.proc3829879.chain_3652,blat.proc3829879.chain_3654	6
scaffold_21	skipped_exon	8971393	8974150	-	asmbl_27965,asmbl_27968	none	STRG.24397.2,blat.proc3829899.chain_1461,blat.proc3829899.chain_1463	3	STRG.24397.1,STRG.24397.3,blat.proc3829899.chain_1462,blat.proc3829899.chain_1464	4
scaffold_14	spliced_intron	8610516	8610600	-	asmbl_13308,asmbl_13310	none	STRG.17280.1,STRG.17280.2,blat.proc3829895.chain_1989,blat.proc3829895.chain_1992	4	Trinity_GG_26710_c0_g1_i2,blat.proc3829895.chain_1991	2
scaffold_16	retained_exon	14486585	14486677	+	asmbl_17484	none	STRG.19814.2	1	STRG.19814.1,blat.proc3829881.chain_700,blat.proc3829881.chain_701	3
scaffold_16	alt_donor	433711	433712	-	asmbl_16044,asmbl_16045	none	blat.proc3829897.chain_17,blat.proc3829897.chain_18	2	blat.proc3829897.chain_26	1
scaffold_18	skipped_exon	3915622	3917646	-	asmbl_19819	none	blat.proc3829897.chain_2089	1	STRG.21192.2,STRG.21192.3,STRG.21192.4,STRG.21192.5	4
scaffold_6	ends_in_intron	3052527	3052527	+	asmbl_46741	none	blat.proc3829873.chain_3447	1	STRG.7308.1,blat.proc3829873.chain_3438,blat.proc3829873.chain_3439	3
scaffold_9	spliced_intron	17743121	17743198	+	asmbl_54615,asmbl_54616,asmbl_54617,asmbl_54619	none	STRG.11853.1,STRG.11853.3,blat.proc3829877.chain_521,blat.proc3829877.chain_525,blat.proc3829877.chain_526,blat.proc3829877.chain_527	6	blat.proc3829877.chain_523	1
scaffold_13	alt_donor	3478921	3478922	+	asmbl_10678	none	STRG.15641.2	1	STRG.15641.1,blat.proc3829879.chain_311	2
scaffold_1	alternate_exon	17524829	17524924	-	asmbl_1036	none	STRG.1212.2	1	STRG.1213.1,Trinity_GG_17656_c0_g1_i1,blat.proc3829887.chain_1095	3
scaffold_15	ends_in_intron	2563291	2563291	+	asmbl_14005	none	blat.proc3829879.chain_2686	1	STRG.18036.1,STRG.18036.2,STRG.18036.3	3
scaffold_16	alt_donor	3577214	3577215	-	asmbl_16162	none	STRG.19161.1,blat.proc3829897.chain_152	2	STRG.19161.2	1
scaffold_5	starts_in_intron	13689035	13689035	-	asmbl_45931	none	blat.proc3829889.chain_2642	1	STRG.6579.1,blat.proc3829889.chain_2643	2
scaffold_4	alt_acceptor	19571994	19571995	+	asmbl_43498	none	STRG.5539.1,blat.proc3829873.chain_1734	2	STRG.5539.3	1
scaffold_7	alt_acceptor	13236179	13236180	+	asmbl_51215	none	STRG.9424.2	1	STRG.9424.1,blat.proc3829875.chain_1888	2
scaffold_8	spliced_intron	16503765	16503928	-	asmbl_53409,asmbl_53420,asmbl_53421,asmbl_53423,asmbl_53425,asmbl_53430	none	STRG.10621.1,Trinity_GG_22960_c0_g1_i9,blat.proc3829891.chain_2858,blat.proc3829891.chain_2859,blat.proc3829891.chain_2862,blat.proc3829891.chain_2865,blat.proc3829891.chain_2871	7	STRG.10621.2,Trinity_GG_22960_c0_g1_i18,Trinity_GG_22960_c0_g1_i19,Trinity_GG_22960_c0_g1_i24,blat.proc3829891.chain_2856,blat.proc3829891.chain_2857,blat.proc3829891.chain_2872	7
scaffold_16	ends_in_intron	11335407	11335407	+	asmbl_17383	none	STRG.19652.3	1	STRG.19652.1,blat.proc3829881.chain_553	2
scaffold_1	retained_exon	14320864	14320892	+	asmbl_2357	none	STRG.1024.3,blat.proc3829871.chain_1126	2	STRG.1024.1,blat.proc3829871.chain_1129	2
scaffold_4	retained_intron	14086400	14086753	+	asmbl_43173,asmbl_43174	none	STRG.5028.3,Trinity_GG_2786_c0_g1_i1,blat.proc3829873.chain_1325	3	STRG.5028.1,Trinity_GG_2786_c0_g1_i2,blat.proc3829873.chain_1324	3
scaffold_5	spliced_intron	13162731	13162841	+	asmbl_44529	none	STRG.6542.1	1	STRG.6542.2	1
scaffold_3	alternate_exon	3251768	3251992	+	asmbl_39898,asmbl_39903	none	STRG.3087.4,STRG.3087.5	2	STRG.3087.1,STRG.3087.6,blat.proc3829871.chain_3306,blat.proc3829871.chain_3309	4
scaffold_2	spliced_intron	888658	888818	+	asmbl_24149	none	blat.proc3829871.chain_1546	1	STRG.1564.3,Trinity_GG_856_c0_g1_i3,blat.proc3829871.chain_1548	3
scaffold_4	alt_donor	5651695	5651696	-	asmbl_41354,asmbl_41364	none	STRG.4469.3,blat.proc3829889.chain_607	2	STRG.4469.2,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_605,blat.proc3829889.chain_608,blat.proc3829889.chain_610,blat.proc3829889.chain_611,blat.proc3829889.chain_612,blat.proc3829889.chain_613	9
scaffold_17	spliced_intron	14633326	14633465	+	asmbl_18537	none	blat.proc3829881.chain_1774	1	STRG.20934.2	1
scaffold_9	retained_intron	11842071	11842161	-	asmbl_55298	none	blat.proc3829891.chain_3622	1	STRG.11491.1,blat.proc3829891.chain_3619,blat.proc3829891.chain_3620,blat.proc3829891.chain_3623,blat.proc3829891.chain_3624,blat.proc3829891.chain_3625,blat.proc3829891.chain_3626	7
scaffold_13	alternate_exon	8803187	8803283	-	asmbl_9947	none	blat.proc3829895.chain_942	1	STRG.16137.4,Trinity_GG_26094_c0_g1_i4,blat.proc3829895.chain_939,blat.proc3829895.chain_940,blat.proc3829895.chain_941,blat.proc3829895.chain_943	6
scaffold_7	alternate_exon	8172270	8173679	+	asmbl_50842	none	STRG.9039.3,Trinity_GG_5002_c0_g2_i2,blat.proc3829875.chain_1469	3	STRG.9039.2,blat.proc3829875.chain_1471	2
scaffold_28	spliced_intron	5611858	5612155	-	asmbl_37621	none	STRG.29674.5,Trinity_GG_33655_c0_g1_i1,blat.proc3829901.chain_2808	3	STRG.29674.4,Trinity_GG_33655_c0_g1_i6,blat.proc3829901.chain_2811	3
scaffold_3	alternate_exon	8167568	8169388	-	asmbl_38975	none	blat.proc3829887.chain_3136	1	blat.proc3829887.chain_3128	1
scaffold_4	alt_donor	19337827	19337828	-	asmbl_42178	none	STRG.5513.2	1	STRG.5513.1,blat.proc3829889.chain_1519	2
scaffold_18	skipped_exon	7686561	7686884	+	asmbl_20804,asmbl_20806	none	STRG.21464.1,Trinity_GG_11863_c0_g1_i8,blat.proc3829881.chain_2437,blat.proc3829881.chain_2439	4	STRG.21464.3,blat.proc3829881.chain_2440	2
scaffold_22	alt_donor	11641498	11641499	-	asmbl_30458,asmbl_30460	none	STRG.25493.2,STRG.25493.4,blat.proc3829899.chain_2578	3	STRG.25493.1	1
scaffold_5	spliced_intron	5063957	5064056	-	asmbl_45415	none	STRG.5956.2,Trinity_GG_20370_c0_g1_i3,blat.proc3829889.chain_2047	3	Trinity_GG_20370_c0_g1_i1,blat.proc3829889.chain_2048	2
scaffold_15	skipped_exon	2566797	2567481	-	asmbl_15032,asmbl_15033	none	STRG.18037.3,STRG.18037.4	2	STRG.18037.1,STRG.18037.2,STRG.18037.5,blat.proc3829895.chain_2773,blat.proc3829895.chain_2774,blat.proc3829895.chain_2775	6
scaffold_2	retained_exon	3898797	3898886	+	asmbl_24338	none	STRG.1831.2,blat.proc3829871.chain_1842	2	STRG.1831.1,blat.proc3829871.chain_1839,blat.proc3829871.chain_1841	3
scaffold_9	alt_acceptor	7796386	7796387	+	asmbl_54130	none	blat.proc3829875.chain_3709	1	blat.proc3829875.chain_3710,blat.proc3829875.chain_3713,blat.proc3829875.chain_3716	3
scaffold_6	alt_acceptor	8460400	8460401	+	asmbl_47062	none	STRG.7708.2,blat.proc3829875.chain_72	2	STRG.7708.3	1
scaffold_2	alt_donor	2903659	2903660	-	asmbl_22969,asmbl_22973	none	STRG.1728.2,blat.proc3829887.chain_1509,blat.proc3829887.chain_1511	3	STRG.1728.1,blat.proc3829887.chain_1508,blat.proc3829887.chain_1510,blat.proc3829887.chain_1512	4
scaffold_6	alt_acceptor	2479060	2479061	-	asmbl_48078	none	STRG.7236.2	1	STRG.7236.1,STRG.7236.3,blat.proc3829889.chain_3219,blat.proc3829889.chain_3220,blat.proc3829889.chain_3223	5
scaffold_20	retained_intron	10135588	10137307	+	asmbl_26092	none	STRG.23544.1,Trinity_GG_13031_c0_g1_i1,blat.proc3829883.chain_663	3	blat.proc3829883.chain_665	1
scaffold_16	starts_in_intron	6146735	6146735	+	asmbl_17078	none	Trinity_GG_10589_c0_g1_i3	1	STRG.19342.2,STRG.19342.3,STRG.19342.4,blat.proc3829881.chain_210	4
scaffold_25	alt_donor	6438158	6438159	+	asmbl_33626	none	STRG.27506.2,blat.proc3829885.chain_534	2	STRG.27506.1,blat.proc3829885.chain_535	2
scaffold_14	retained_intron	15565514	15565621	+	asmbl_12609	none	STRG.17784.1	1	blat.proc3829879.chain_2468	1
scaffold_18	retained_intron	9259474	9259564	-	asmbl_20092,asmbl_20096	none	STRG.21559.2,Trinity_GG_29070_c0_g1_i2,Trinity_GG_29070_c0_g1_i3,blat.proc3829897.chain_2411,blat.proc3829897.chain_2413	5	STRG.21559.1,STRG.21559.3,Trinity_GG_29070_c0_g1_i5,blat.proc3829897.chain_2410	4
scaffold_7	starts_in_intron	13243466	13243466	+	asmbl_51218	none	STRG.9429.2	1	STRG.9429.1,blat.proc3829875.chain_1862	2
scaffold_28	spliced_intron	7359508	7359739	+	asmbl_38362	none	STRG.29785.1,blat.proc3829885.chain_2874	2	Trinity_GG_16497_c0_g1_i6,blat.proc3829885.chain_2872	2
scaffold_19	starts_in_intron	5459081	5459081	-	asmbl_21371	none	STRG.22096.2	1	STRG.22096.1,blat.proc3829897.chain_2868	2
scaffold_7	alt_donor	5211447	5211448	+	asmbl_50675	none	STRG.8849.1,Trinity_GG_4846_c0_g1_i1,blat.proc3829875.chain_1219	3	STRG.8849.2,Trinity_GG_4846_c0_g1_i2,blat.proc3829875.chain_1220	3
scaffold_2	spliced_intron	15266613	15266717	+	asmbl_25022,asmbl_25031	none	STRG.2480.3,Trinity_GG_1353_c0_g1_i14,blat.proc3829871.chain_2521	3	STRG.2480.1,STRG.2480.2,blat.proc3829871.chain_2514,blat.proc3829871.chain_2515,blat.proc3829871.chain_2516,blat.proc3829871.chain_2517,blat.proc3829871.chain_2518,blat.proc3829871.chain_2519,blat.proc3829871.chain_2520,blat.proc3829871.chain_2522,blat.proc3829871.chain_2523	11
scaffold_8	alt_acceptor	14395606	14395607	-	asmbl_53311	none	STRG.10517.2,blat.proc3829891.chain_2658	2	STRG.10517.1,blat.proc3829891.chain_2657	2
scaffold_2	starts_in_intron	8306059	8306059	+	asmbl_24667	none	Trinity_GG_1200_c0_g1_i2,blat.proc3829871.chain_2236	2	STRG.2114.1,STRG.2114.2	2
scaffold_12	starts_in_intron	3783115	3783115	-	asmbl_7501	none	Trinity_GG_25090_c0_g1_i1,blat.proc3829893.chain_2873	2	STRG.14569.1,blat.proc3829893.chain_2874	2
scaffold_2	alt_acceptor	13902715	13902716	-	asmbl_23549,asmbl_23553,asmbl_23554,asmbl_23555	none	STRG.2382.1,STRG.2382.2,blat.proc3829887.chain_2287,blat.proc3829887.chain_2289,blat.proc3829887.chain_2290	5	blat.proc3829887.chain_2288	1
scaffold_14	starts_in_intron	4704237	4704237	-	asmbl_13047	none	blat.proc3829895.chain_1659	1	STRG.16993.1,blat.proc3829895.chain_1658	2
scaffold_13	starts_in_intron	8355420	8355420	+	asmbl_11117	none	blat.proc3829879.chain_890	1	STRG.16112.1,STRG.16112.2,STRG.16112.3,blat.proc3829879.chain_891,blat.proc3829879.chain_892	5
scaffold_14	ends_in_intron	3243557	3243557	+	asmbl_11908	none	blat.proc3829879.chain_1550	1	STRG.16901.1,STRG.16901.2,blat.proc3829879.chain_1549,blat.proc3829879.chain_1551,blat.proc3829879.chain_1553	5
scaffold_26	alternate_exon	9097312	9097449	+	asmbl_35732	none	STRG.28457.2,blat.proc3829885.chain_1444	2	STRG.28457.1,Trinity_GG_15720_c0_g1_i1,blat.proc3829885.chain_1443	3
scaffold_9	starts_in_intron	9768774	9768774	+	asmbl_54237	none	blat.proc3829877.chain_130	1	STRG.11340.1,blat.proc3829877.chain_129	2
scaffold_7	retained_exon	15316971	15317130	-	asmbl_50186	none	STRG.9540.2,Trinity_GG_22371_c0_g1_i1,blat.proc3829891.chain_1774,blat.proc3829891.chain_1775	4	STRG.9540.3	1
scaffold_5	retained_intron	1250555	1251453	-	asmbl_45239,asmbl_45240	none	Trinity_GG_20219_c0_g1_i2,blat.proc3829889.chain_1780,blat.proc3829889.chain_1783	3	STRG.5683.1,blat.proc3829889.chain_1782,blat.proc3829889.chain_1784	3
scaffold_20	spliced_intron	5845709	5845968	-	asmbl_26698	none	STRG.23171.1,blat.proc3829899.chain_193	2	STRG.23171.2,Trinity_GG_29935_c0_g1_i3,blat.proc3829899.chain_194,blat.proc3829899.chain_195	4
scaffold_20	retained_intron	11547068	11547149	-	asmbl_27080	none	Trinity_GG_30178_c0_g1_i1,blat.proc3829899.chain_643	2	STRG.23646.1,blat.proc3829899.chain_644	2
scaffold_10	starts_in_intron	5156069	5156069	-	asmbl_3261	none	Trinity_GG_23897_c0_g1_i1,blat.proc3829893.chain_793	2	STRG.12328.1,Trinity_GG_23897_c0_g1_i2,blat.proc3829893.chain_792	3
scaffold_3	spliced_intron	4267463	4267695	-	asmbl_38750	none	STRG.3118.2	1	STRG.3118.1,STRG.3118.3,Trinity_GG_18712_c0_g1_i1,Trinity_GG_18712_c0_g1_i2,Trinity_GG_18712_c0_g2_i2,blat.proc3829887.chain_2882,blat.proc3829887.chain_2883,blat.proc3829887.chain_2884	8
scaffold_12	alternate_exon	16316452	16316495	-	asmbl_8259	none	blat.proc3829895.chain_113	1	STRG.15369.1,STRG.15369.2,blat.proc3829895.chain_112,blat.proc3829895.chain_114	4
scaffold_8	retained_intron	7985872	7986129	-	asmbl_52932,asmbl_52934,asmbl_52935	none	STRG.10092.2,blat.proc3829891.chain_2261,blat.proc3829891.chain_2262,blat.proc3829891.chain_2263	4	STRG.10092.1,Trinity_GG_22656_c0_g1_i5,Trinity_GG_22656_c0_g1_i6,blat.proc3829891.chain_2264,blat.proc3829891.chain_2265	5
scaffold_20	ends_in_intron	10174752	10174752	-	asmbl_27015	none	STRG.23554.2,Trinity_GG_30140_c1_g1_i1,blat.proc3829899.chain_563	3	STRG.23554.1,blat.proc3829899.chain_560	2
scaffold_2	alt_donor	8874086	8874087	+	asmbl_24688,asmbl_24689,asmbl_24690	none	STRG.2139.1,STRG.2139.3,STRG.2139.4,blat.proc3829871.chain_2262	4	STRG.2139.2,blat.proc3829871.chain_2261	2
scaffold_23	spliced_intron	6290063	6290359	-	asmbl_31687,asmbl_31692,asmbl_31693	none	STRG.25954.1,Trinity_GG_31552_c0_g1_i2,Trinity_GG_31552_c0_g1_i5,blat.proc3829899.chain_3101,blat.proc3829899.chain_3104,blat.proc3829899.chain_3107	6	STRG.25954.2,Trinity_GG_31552_c0_g1_i3,Trinity_GG_31552_c0_g1_i4,Trinity_GG_31552_c0_g1_i6,Trinity_GG_31552_c0_g1_i7,blat.proc3829899.chain_3102,blat.proc3829899.chain_3103,blat.proc3829899.chain_3105,blat.proc3829899.chain_3106	9
scaffold_15	alt_acceptor	10766506	10766507	+	asmbl_14405	none	STRG.18552.3,blat.proc3829879.chain_3157	2	blat.proc3829879.chain_3159,blat.proc3829879.chain_3160,blat.proc3829879.chain_3161	3
scaffold_16	starts_in_intron	3566533	3566533	-	asmbl_16155	none	STRG.19157.1	1	STRG.19157.2,blat.proc3829897.chain_186	2
scaffold_10	retained_exon	5178322	5178379	+	asmbl_4427,asmbl_4432	none	STRG.12337.1,blat.proc3829877.chain_984,blat.proc3829877.chain_985	3	STRG.12337.2,blat.proc3829877.chain_983	2
scaffold_1	starts_in_intron	169083	169083	+	asmbl_1399,asmbl_1400	none	Trinity_GG_21_c0_g2_i1,Trinity_GG_21_c0_g2_i2,blat.proc3829871.chain_35,blat.proc3829871.chain_36	4	STRG.14.1,Trinity_GG_21_c0_g1_i1,blat.proc3829871.chain_33	3
scaffold_26	spliced_intron	5894602	5894720	-	asmbl_34913,asmbl_34914,asmbl_34919	none	STRG.28281.1,STRG.28281.2,blat.proc3829901.chain_1395,blat.proc3829901.chain_1396,blat.proc3829901.chain_1397	5	Trinity_GG_32791_c0_g1_i6,blat.proc3829901.chain_1392	2
scaffold_4	alternate_exon	4552343	4552466	+	asmbl_42621,asmbl_42622	none	STRG.4367.1,STRG.4367.3	2	STRG.4367.2,blat.proc3829873.chain_736,blat.proc3829873.chain_737,blat.proc3829873.chain_738	4
scaffold_1	spliced_intron	5731015	5731118	-	asmbl_294,asmbl_295	none	STRG.379.1,STRG.379.2,blat.proc3829887.chain_259,blat.proc3829887.chain_260	4	blat.proc3829887.chain_257	1
scaffold_6	alt_donor	7171412	7171413	+	asmbl_46988,asmbl_46989,asmbl_46991	none	STRG.7621.1,STRG.7621.4,blat.proc3829873.chain_3739	3	STRG.7621.3	1
scaffold_16	alt_acceptor	13980974	13980975	-	asmbl_16604	none	STRG.19783.2	1	STRG.19783.1,Trinity_GG_28094_c0_g1_i1,blat.proc3829897.chain_720	3
scaffold_7	ends_in_intron	5344147	5344147	-	asmbl_49697	none	STRG.8863.3,blat.proc3829891.chain_1209	2	STRG.8863.2	1
scaffold_22	starts_in_intron	11696330	11696330	+	asmbl_29703	none	Trinity_GG_14072_c0_g1_i1	1	STRG.25496.1,blat.proc3829883.chain_2416	2
scaffold_7	retained_intron	1233710	1233915	+	asmbl_50470,asmbl_50483,asmbl_50484,asmbl_50485	none	STRG.8627.2,STRG.8627.8,Trinity_GG_4740_c0_g1_i15,Trinity_GG_4740_c0_g1_i17,Trinity_GG_4740_c0_g1_i21,blat.proc3829875.chain_1046,blat.proc3829875.chain_1047,blat.proc3829875.chain_1052	8	STRG.8627.5,STRG.8627.6	2
scaffold_25	retained_intron	4319009	4319168	+	asmbl_33483,asmbl_33484,asmbl_33485	none	STRG.27342.2,STRG.27342.3,Trinity_GG_15082_c0_g1_i1,Trinity_GG_15082_c0_g1_i2,blat.proc3829885.chain_383,blat.proc3829885.chain_384,blat.proc3829885.chain_385	7	STRG.27342.1,blat.proc3829885.chain_382	2
scaffold_17	spliced_intron	14040943	14041125	+	asmbl_18496	none	STRG.20863.3	1	STRG.20863.1,blat.proc3829881.chain_1718	2
scaffold_3	spliced_intron	1466208	1466551	-	asmbl_38665	none	STRG.2962.2,blat.proc3829887.chain_2766	2	STRG.2962.1,blat.proc3829887.chain_2765	2
scaffold_5	retained_intron	15043048	15043289	-	asmbl_46014,asmbl_46016,asmbl_46020	none	STRG.6692.6,STRG.6692.8,STRG.6692.9,blat.proc3829889.chain_2740	4	STRG.6692.4,STRG.6692.5,blat.proc3829889.chain_2742	3
scaffold_10	retained_intron	12946554	12946681	+	asmbl_4833	none	Trinity_GG_7112_c0_g1_i2,blat.proc3829877.chain_1469	2	STRG.12875.1,Trinity_GG_7112_c0_g1_i1,blat.proc3829877.chain_1470	3
scaffold_5	ends_in_intron	15042733	15042733	-	asmbl_46014,asmbl_46016,asmbl_46020	none	STRG.6692.6,STRG.6692.8,STRG.6692.9,blat.proc3829889.chain_2740	4	STRG.6692.2,STRG.6692.3,blat.proc3829889.chain_2739,blat.proc3829889.chain_2741	4
scaffold_13	alt_acceptor	13559333	13559334	+	asmbl_11372	none	STRG.16395.2	1	STRG.16395.1	1
scaffold_4	alt_acceptor	17524253	17524254	-	asmbl_42030	none	STRG.5338.1,blat.proc3829889.chain_1404	2	STRG.5338.2,blat.proc3829889.chain_1405	2
scaffold_4	spliced_intron	12571369	12571452	-	asmbl_41674	none	STRG.4898.1,blat.proc3829889.chain_965	2	blat.proc3829889.chain_967	1
scaffold_7	spliced_intron	4047076	4047197	-	asmbl_49661	none	STRG.8793.3,blat.proc3829891.chain_1137	2	blat.proc3829891.chain_1134	1
scaffold_175	ends_in_intron	8401	8401	-	asmbl_19587	none	STRG.30188.2	1	STRG.30188.1	1
scaffold_7	retained_intron	12451061	12451190	-	asmbl_50050	none	Trinity_GG_22282_c1_g1_i3,blat.proc3829891.chain_1613	2	STRG.9342.3	1
scaffold_19	ends_in_intron	12130532	12130532	+	asmbl_22560,asmbl_22561	none	Trinity_GG_12471_c0_g1_i2,Trinity_GG_12471_c0_g1_i3	2	STRG.22530.1,Trinity_GG_12471_c0_g1_i1,blat.proc3829881.chain_3492	3
scaffold_111	starts_in_intron	14628	14628	-	asmbl_7366	none	blat.proc3829901.chain_3224	1	STRG.30137.1,blat.proc3829901.chain_3225	2
scaffold_16	alternate_exon	4073720	4073833	+	asmbl_16956,asmbl_16957	none	STRG.19212.2,blat.proc3829881.chain_2	2	STRG.19212.1,Trinity_GG_10492_c0_g1_i2,blat.proc3829881.chain_1,blat.proc3829881.chain_3	4
scaffold_2	ends_in_intron	6903505	6903505	+	asmbl_24530,asmbl_24537,asmbl_24538,asmbl_24539,asmbl_24545,asmbl_24547	none	STRG.2036.5,STRG.2036.6,blat.proc3829871.chain_2016,blat.proc3829871.chain_2017,blat.proc3829871.chain_2018,blat.proc3829871.chain_2022	6	STRG.2036.1,STRG.2036.2,STRG.2036.3,blat.proc3829871.chain_2019	4
scaffold_12	retained_exon	7172721	7172892	+	asmbl_8683,asmbl_8686	none	STRG.14775.2,blat.proc3829877.chain_3241,blat.proc3829877.chain_3242	3	STRG.14775.1	1
scaffold_12	retained_intron	10187619	10188436	-	asmbl_7863,asmbl_7864	none	STRG.14979.3,blat.proc3829893.chain_3402	2	STRG.14979.2,blat.proc3829893.chain_3405	2
scaffold_9	alt_acceptor	12633013	12633014	+	asmbl_54429,asmbl_54431,asmbl_54433,asmbl_54435	none	STRG.11574.1,STRG.11574.3,STRG.11574.4,Trinity_GG_6469_c0_g1_i5,Trinity_GG_6469_c0_g1_i6,blat.proc3829877.chain_353,blat.proc3829877.chain_355	7	STRG.11574.2,Trinity_GG_6469_c0_g1_i8,blat.proc3829877.chain_357	3
scaffold_26	alt_donor	10097599	10097600	-	asmbl_35079	none	STRG.28512.1,blat.proc3829901.chain_1638	2	STRG.28512.2	1
scaffold_11	starts_in_intron	7596973	7596973	-	asmbl_6754	none	Trinity_GG_24683_c0_g1_i1,blat.proc3829893.chain_2149	2	STRG.13754.1,STRG.13754.2,Trinity_GG_24683_c0_g1_i2,Trinity_GG_24683_c0_g1_i3,blat.proc3829893.chain_2147,blat.proc3829893.chain_2148	6
scaffold_8	skipped_exon	12625677	12626425	-	asmbl_53217	none	STRG.10429.2	1	STRG.10429.1,blat.proc3829891.chain_2557,blat.proc3829891.chain_2558	3
scaffold_9	spliced_intron	7025897	7025977	+	asmbl_54110	none	STRG.11203.1,blat.proc3829875.chain_3729	2	Trinity_GG_6261_c1_g1_i1,blat.proc3829875.chain_3730	2
scaffold_25	alternate_exon	989676	989828	+	asmbl_33354	none	STRG.27140.1,blat.proc3829885.chain_184	2	STRG.27140.2	1
scaffold_8	alt_donor	17747507	17747508	-	asmbl_53498	none	STRG.10680.2	1	STRG.10680.1	1
scaffold_12	ends_in_intron	7973071	7973071	+	asmbl_8770	none	blat.proc3829877.chain_3359	1	STRG.14847.1,blat.proc3829877.chain_3357,blat.proc3829877.chain_3358,blat.proc3829877.chain_3360	4
scaffold_18	retained_exon	7867647	7867712	+	asmbl_20831	none	STRG.21477.6	1	STRG.21477.5,blat.proc3829881.chain_2470	2
scaffold_3	starts_in_intron	6244833	6244833	-	asmbl_38885,asmbl_38889	none	STRG.3263.4,blat.proc3829887.chain_3036	2	STRG.3263.1,STRG.3263.2,STRG.3263.5,STRG.3263.6,STRG.3263.7,blat.proc3829887.chain_3031,blat.proc3829887.chain_3032,blat.proc3829887.chain_3034,blat.proc3829887.chain_3035	9
scaffold_23	alt_acceptor	1996772	1996773	-	asmbl_31398	none	STRG.25651.2	1	STRG.25651.1,blat.proc3829899.chain_2732	2
scaffold_17	spliced_intron	13048788	13049071	+	asmbl_18430	none	STRG.20788.1,blat.proc3829881.chain_1625	2	Trinity_GG_11416_c0_g2_i1,blat.proc3829881.chain_1626	2
scaffold_12	alt_acceptor	12452016	12452017	+	asmbl_8971,asmbl_8972	none	STRG.15137.1,STRG.15137.4	2	STRG.15137.2	1
scaffold_16	ends_in_intron	11395235	11395235	-	asmbl_16523	none	blat.proc3829897.chain_607	1	STRG.19663.3,blat.proc3829897.chain_611	2
scaffold_17	retained_exon	607924	607947	-	asmbl_18673,asmbl_18675	none	STRG.19894.1,STRG.19894.3	2	STRG.19894.2	1
scaffold_4	ends_in_intron	3270622	3270622	+	asmbl_42489,asmbl_42491	none	STRG.4252.2,blat.proc3829873.chain_516	2	STRG.4252.1,blat.proc3829873.chain_514,blat.proc3829873.chain_515,blat.proc3829873.chain_517	4
scaffold_28	ends_in_intron	6490236	6490236	-	asmbl_37667	none	Trinity_GG_33635_c0_g1_i1,blat.proc3829901.chain_2778	2	STRG.29728.1,blat.proc3829901.chain_2780	2
scaffold_17	skipped_exon	5489357	5490876	-	asmbl_18980	none	STRG.20256.2	1	STRG.20256.1,blat.proc3829897.chain_1205	2
scaffold_28	alternate_exon	1704278	1704305	-	asmbl_37333	none	STRG.29347.3	1	STRG.29347.1,STRG.29347.2,blat.proc3829901.chain_2393	3
scaffold_2	ends_in_intron	7783372	7783372	+	asmbl_24613	none	blat.proc3829871.chain_2208	1	STRG.2076.2,STRG.2076.6,blat.proc3829871.chain_2205,blat.proc3829871.chain_2211	4
scaffold_10	starts_in_intron	11450944	11450944	-	asmbl_3682	none	blat.proc3829893.chain_1255	1	STRG.12789.1,blat.proc3829893.chain_1254	2
scaffold_13	skipped_exon	2340952	2343859	+	asmbl_10591	none	STRG.15543.9	1	STRG.15543.3,STRG.15543.4,STRG.15543.6,STRG.15543.7,blat.proc3829879.chain_152,blat.proc3829879.chain_154,blat.proc3829879.chain_155,blat.proc3829879.chain_156,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_160,blat.proc3829879.chain_161,blat.proc3829879.chain_162	13
scaffold_26	alt_donor	2926959	2926960	+	asmbl_35289	none	STRG.27961.1,Trinity_GG_15430_c0_g1_i1,blat.proc3829885.chain_945	3	STRG.27961.2	1
scaffold_19	retained_intron	12819130	12819507	-	asmbl_21756,asmbl_21757,asmbl_21758	none	STRG.22593.2,STRG.22593.3,Trinity_GG_29568_c0_g1_i16,blat.proc3829897.chain_3277,blat.proc3829897.chain_3279,blat.proc3829897.chain_3281	6	STRG.22593.1,Trinity_GG_29568_c0_g1_i15,blat.proc3829897.chain_3275,blat.proc3829897.chain_3276,blat.proc3829897.chain_3280	5
scaffold_17	skipped_exon	10037074	10038902	-	asmbl_19276	none	STRG.20608.2	1	STRG.20608.6	1
scaffold_9	alt_donor	12009342	12009343	+	asmbl_54386	none	STRG.11514.2,Trinity_GG_6415_c3_g1_i1,blat.proc3829877.chain_272	3	STRG.11514.1,Trinity_GG_6415_c0_g1_i1,blat.proc3829877.chain_269	3
scaffold_4	spliced_intron	4890208	4890382	-	asmbl_41276	none	STRG.4381.1,blat.proc3829889.chain_499	2	Trinity_GG_19469_c0_g1_i1,blat.proc3829889.chain_500	2
scaffold_9	starts_in_intron	11796697	11796697	-	asmbl_55267	none	STRG.11484.4,Trinity_GG_23344_c1_g1_i1,blat.proc3829891.chain_3595	3	STRG.11484.1,STRG.11484.2,blat.proc3829891.chain_3590,blat.proc3829891.chain_3591,blat.proc3829891.chain_3593	5
scaffold_21	alternate_exon	704023	704068	-	asmbl_27383	none	Trinity_GG_30242_c0_g1_i4,blat.proc3829899.chain_812	2	STRG.23751.1,Trinity_GG_30242_c0_g1_i8,Trinity_GG_30242_c0_g2_i1,blat.proc3829899.chain_811,blat.proc3829899.chain_813,blat.proc3829899.chain_818	6
scaffold_13	alt_donor	2950742	2950743	-	asmbl_9453	none	STRG.15578.2	1	STRG.15578.1,blat.proc3829895.chain_348	2
scaffold_11	retained_intron	17376092	17376187	+	asmbl_6204	none	Trinity_GG_7898_c0_g1_i3,blat.proc3829877.chain_2827	2	STRG.14392.1,STRG.14392.2,blat.proc3829877.chain_2826	3
scaffold_20	retained_intron	631183	631334	-	asmbl_26438	none	blat.proc3829897.chain_3525	1	STRG.22751.1,blat.proc3829897.chain_3522	2
scaffold_3	alt_acceptor	6184096	6184097	-	asmbl_38867	none	STRG.3262.4	1	STRG.3262.3,blat.proc3829887.chain_3018	2
scaffold_5	starts_in_intron	3522579	3522579	-	asmbl_45301	none	STRG.5816.1	1	STRG.5816.2,Trinity_GG_20296_c0_g1_i2,blat.proc3829889.chain_1912	3
scaffold_1	alternate_exon	975598	975631	-	asmbl_37,asmbl_41	none	STRG.57.1,Trinity_GG_17049_c1_g1_i2,blat.proc3829885.chain_3720,blat.proc3829885.chain_3721	4	STRG.57.2,Trinity_GG_17049_c1_g1_i1,blat.proc3829885.chain_3722	3
scaffold_7	alt_acceptor	1162678	1162679	+	asmbl_50458	none	STRG.8620.2	1	STRG.8620.1,blat.proc3829875.chain_990	2
scaffold_3	alt_donor	15786823	15786824	-	asmbl_39397,asmbl_39398	none	STRG.3856.1,STRG.3856.4	2	STRG.3856.2	1
scaffold_21	ends_in_intron	5518851	5518851	-	asmbl_27689	none	Trinity_GG_30440_c1_g1_i2,blat.proc3829899.chain_1155	2	STRG.24069.1,blat.proc3829899.chain_1156,blat.proc3829899.chain_1157	3
scaffold_22	alternate_exon	8016869	8017360	+	asmbl_29545	none	STRG.25140.2	1	STRG.25140.1,blat.proc3829883.chain_2220	2
scaffold_25	starts_in_intron	2962843	2962843	-	asmbl_34066	none	blat.proc3829901.chain_513	1	STRG.27221.1,blat.proc3829901.chain_514	2
scaffold_2	skipped_exon	12653089	12653786	-	asmbl_23488	none	STRG.2312.2,Trinity_GG_18295_c0_g1_i1,blat.proc3829887.chain_2179	3	STRG.2312.1,Trinity_GG_18295_c0_g1_i2,blat.proc3829887.chain_2180	3
scaffold_15	retained_intron	14324311	14324883	-	asmbl_15734,asmbl_15736	none	Trinity_GG_27599_c0_g1_i1,Trinity_GG_27599_c0_g1_i11,blat.proc3829895.chain_3605	3	STRG.18855.3	1
scaffold_12	alternate_exon	2920939	2926205	-	asmbl_7467	none	STRG.14515.5	1	STRG.14515.6	1
scaffold_16	alternate_exon	13217490	13218082	+	asmbl_17461	none	blat.proc3829881.chain_600	1	STRG.19770.2,STRG.19770.3,blat.proc3829881.chain_595	3
scaffold_19	alternate_exon	3557632	3557817	+	asmbl_22129	none	Trinity_GG_12191_c0_g1_i4,blat.proc3829881.chain_2996	2	STRG.22033.2	1
scaffold_20	starts_in_intron	2852175	2852175	-	asmbl_26604	none	blat.proc3829897.chain_3747	1	STRG.23007.1,blat.proc3829897.chain_3746	2
scaffold_15	alt_acceptor	15355425	15355426	+	asmbl_14710	none	blat.proc3829879.chain_3500	1	STRG.18909.2,blat.proc3829879.chain_3499	2
scaffold_3	retained_intron	7908386	7908760	-	asmbl_38946	none	STRG.3369.2,blat.proc3829887.chain_3164	2	STRG.3369.1,blat.proc3829887.chain_3165	2
scaffold_12	alt_donor	5463413	5463414	-	asmbl_7628,asmbl_7630,asmbl_7631	none	STRG.14690.2,STRG.14690.3,STRG.14690.5,blat.proc3829893.chain_3105	4	STRG.14690.1,STRG.14690.4,blat.proc3829893.chain_3103,blat.proc3829893.chain_3104	4
scaffold_21	skipped_exon	7811690	7812846	-	asmbl_27874	none	STRG.24304.3	1	blat.proc3829899.chain_1364	1
scaffold_15	alternate_exon	14633945	14634907	-	asmbl_15751	none	STRG.18867.2,blat.proc3829895.chain_3644	2	blat.proc3829895.chain_3646	1
scaffold_1	skipped_exon	9516100	9516733	-	asmbl_550	none	STRG.644.1	1	STRG.644.2,STRG.644.3,blat.proc3829887.chain_519,blat.proc3829887.chain_520,blat.proc3829887.chain_521	5
scaffold_18	alt_acceptor	5905545	5905546	-	asmbl_19914	none	STRG.21327.1	1	blat.proc3829897.chain_2157	1
scaffold_28	alt_acceptor	1641128	1641129	+	asmbl_38013	none	STRG.29333.2	1	STRG.29333.1,STRG.29333.3,blat.proc3829885.chain_2464,blat.proc3829885.chain_2465	4
scaffold_3	alternate_exon	14922750	14923064	-	asmbl_39380	none	STRG.3831.1,blat.proc3829887.chain_3585	2	STRG.3831.2,blat.proc3829887.chain_3584	2
scaffold_9	retained_intron	571057	571140	+	asmbl_53751,asmbl_53752	none	STRG.10779.2,STRG.10779.7	2	blat.proc3829875.chain_3224	1
scaffold_3	alt_donor	6832388	6832389	+	asmbl_40096,asmbl_40097,asmbl_40099	none	STRG.3303.2,blat.proc3829871.chain_3485,blat.proc3829871.chain_3486	3	STRG.3303.1	1
scaffold_9	skipped_exon	9733851	9736448	+	asmbl_54229	none	STRG.11341.1,blat.proc3829877.chain_146	2	STRG.11341.4,blat.proc3829877.chain_145,blat.proc3829877.chain_151,blat.proc3829877.chain_153	4
scaffold_2	retained_exon	6761484	6761550	-	asmbl_23257,asmbl_23258,asmbl_23259	none	STRG.2030.1,STRG.2030.2,STRG.2030.3,blat.proc3829887.chain_1918,blat.proc3829887.chain_1919,blat.proc3829887.chain_1920	6	STRG.2030.4	1
scaffold_3	retained_intron	13179330	13179422	+	asmbl_40389	none	Trinity_GG_2066_c0_g1_i3,blat.proc3829873.chain_75	2	STRG.3679.1,blat.proc3829873.chain_76,blat.proc3829873.chain_77,blat.proc3829873.chain_78,blat.proc3829873.chain_79,blat.proc3829873.chain_80	6
scaffold_26	spliced_intron	4135749	4135855	-	asmbl_34805,asmbl_34806,asmbl_34808,asmbl_34809	none	STRG.28100.1,STRG.28100.2,STRG.28100.3,STRG.28100.4,blat.proc3829901.chain_1324,blat.proc3829901.chain_1326	6	blat.proc3829901.chain_1325	1
scaffold_19	spliced_intron	12487325	12488732	-	asmbl_21714	none	blat.proc3829897.chain_3288	1	Trinity_GG_29570_c0_g1_i1,Trinity_GG_29570_c0_g3_i1,blat.proc3829897.chain_3285,blat.proc3829897.chain_3289	4
scaffold_8	alt_donor	11761395	11761396	-	asmbl_53162	none	STRG.10372.3	1	STRG.10372.2	1
scaffold_15	ends_in_intron	12391492	12391492	-	asmbl_15593	none	STRG.18686.5	1	STRG.18686.2,STRG.18686.3,STRG.18686.4	3
scaffold_26	spliced_intron	9083573	9083738	-	asmbl_35038	none	STRG.28453.3	1	STRG.28453.1,blat.proc3829901.chain_1598	2
scaffold_5	retained_intron	10382183	10382274	-	asmbl_45737,asmbl_45738,asmbl_45739	none	STRG.6330.3,blat.proc3829889.chain_2440,blat.proc3829889.chain_2441	3	STRG.6330.1,STRG.6330.2	2
scaffold_11	ends_in_intron	8374239	8374239	-	asmbl_6844	none	Trinity_GG_24765_c0_g1_i1,blat.proc3829893.chain_2305	2	STRG.13838.2	1
scaffold_3	spliced_intron	16072334	16072424	+	asmbl_40567,asmbl_40568	none	STRG.3888.1,STRG.3888.2,blat.proc3829873.chain_286,blat.proc3829873.chain_287	4	STRG.3888.3	1
scaffold_27	retained_intron	4938413	4938601	+	asmbl_36284,asmbl_36286,asmbl_36287,asmbl_36288	none	STRG.28914.3,STRG.28914.4,STRG.28914.5,blat.proc3829885.chain_2066	4	STRG.28914.1,STRG.28914.2,STRG.28914.6,blat.proc3829885.chain_2065	4
scaffold_6	alt_donor	2758919	2758920	+	asmbl_46719	none	STRG.7264.4	1	STRG.7264.2	1
scaffold_12	retained_exon	4201513	4201605	-	asmbl_7516	none	STRG.14586.1,blat.proc3829893.chain_2948	2	STRG.14586.2	1
scaffold_13	retained_intron	3585540	3585773	-	asmbl_9514	none	STRG.15660.1,Trinity_GG_25771_c0_g1_i1,blat.proc3829895.chain_373	3	STRG.15660.2,blat.proc3829895.chain_372	2
scaffold_8	retained_intron	4233387	4233662	+	asmbl_51810	none	blat.proc3829875.chain_2342,blat.proc3829875.chain_2343,blat.proc3829875.chain_2346	3	STRG.9899.1,blat.proc3829875.chain_2344,blat.proc3829875.chain_2345	3
scaffold_9	spliced_intron	13319452	13319594	-	asmbl_55401	none	STRG.11624.2	1	STRG.11624.1	1
scaffold_3	alternate_exon	799227	801054	-	asmbl_38632,asmbl_38633	none	STRG.2910.2,STRG.2910.4,Trinity_GG_18623_c0_g1_i2,Trinity_GG_18623_c1_g1_i1,blat.proc3829887.chain_2741,blat.proc3829887.chain_2742,blat.proc3829887.chain_2743	7	STRG.2910.3	1
scaffold_24	ends_in_intron	7172773	7172773	-	asmbl_33006,asmbl_33007	none	blat.proc3829901.chain_4,blat.proc3829901.chain_5	2	STRG.26749.1,STRG.26749.2	2
scaffold_13	retained_intron	3999070	3999310	-	asmbl_9565	none	blat.proc3829895.chain_461	1	STRG.15713.1,STRG.15713.2,blat.proc3829895.chain_459,blat.proc3829895.chain_460	4
scaffold_26	starts_in_intron	750720	750720	-	asmbl_34670	none	STRG.27858.1	1	blat.proc3829901.chain_1084	1
scaffold_16	spliced_intron	2172434	2173338	+	asmbl_16901	none	blat.proc3829879.chain_3738	1	STRG.19105.2,Trinity_GG_10487_c0_g1_i8,blat.proc3829879.chain_3733,blat.proc3829879.chain_3735,blat.proc3829879.chain_3736	5
scaffold_13	retained_intron	400473	401576	-	asmbl_9303,asmbl_9307,asmbl_9308,asmbl_9309,asmbl_9310,asmbl_9311	none	Trinity_GG_25691_c0_g1_i10,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i8,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_221,blat.proc3829895.chain_224,blat.proc3829895.chain_226,blat.proc3829895.chain_228,blat.proc3829895.chain_230,blat.proc3829895.chain_233	12	STRG.15428.1,STRG.15428.2,STRG.15428.3,Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i25,Trinity_GG_25691_c0_g1_i7,blat.proc3829895.chain_220,blat.proc3829895.chain_222,blat.proc3829895.chain_223,blat.proc3829895.chain_229,blat.proc3829895.chain_232	11
scaffold_271	ends_in_intron	202	202	+	asmbl_37181	none	Trinity_GG_16742_c0_g1_i2	1	STRG.30231.1,blat.proc3829885.chain_3266	2
scaffold_21	alternate_exon	7519997	7522549	+	asmbl_28761	none	STRG.24274.1,Trinity_GG_13450_c0_g1_i2,blat.proc3829883.chain_1419	3	Trinity_GG_13450_c0_g1_i1,blat.proc3829883.chain_1418	2
scaffold_7	alt_acceptor	13484595	13484596	-	asmbl_50123	none	STRG.9441.1,blat.proc3829891.chain_1682	2	STRG.9441.2	1
scaffold_23	alt_acceptor	10893532	10893533	-	asmbl_31880	none	STRG.26271.2,blat.proc3829899.chain_3305	2	STRG.26271.1,STRG.26271.3,blat.proc3829899.chain_3304	3
scaffold_7	skipped_exon	15568072	15569453	-	asmbl_50201,asmbl_50202	none	STRG.9545.1,blat.proc3829891.chain_1730	2	blat.proc3829891.chain_1731	1
scaffold_23	alt_acceptor	4226097	4226098	-	asmbl_31568,asmbl_31569,asmbl_31570,asmbl_31571,asmbl_31573,asmbl_31574	none	STRG.25818.1,STRG.25818.2,STRG.25818.3,STRG.25818.5,blat.proc3829899.chain_2943,blat.proc3829899.chain_2944,blat.proc3829899.chain_2945,blat.proc3829899.chain_2949	8	blat.proc3829899.chain_2946	1
scaffold_18	alternate_exon	1512474	1512767	+	asmbl_20383	none	STRG.21033.1,blat.proc3829881.chain_1931	2	STRG.21033.4	1
scaffold_13	retained_intron	14174306	14174488	+	asmbl_11415	none	Trinity_GG_9054_c0_g1_i7,blat.proc3829879.chain_1192	2	STRG.16449.1,Trinity_GG_9054_c0_g1_i3,blat.proc3829879.chain_1195	3
scaffold_7	retained_exon	8173614	8173679	+	asmbl_50844	none	STRG.9039.1,blat.proc3829875.chain_1470	2	STRG.9039.2,blat.proc3829875.chain_1471	2
scaffold_7	alternate_exon	1233415	1233709	+	asmbl_50476	none	STRG.8627.9	1	blat.proc3829875.chain_1043	1
scaffold_23	ends_in_intron	9887501	9887501	+	asmbl_31099	none	STRG.26167.1,blat.proc3829883.chain_3075	2	blat.proc3829883.chain_3074	1
scaffold_5	ends_in_intron	5739398	5739398	+	asmbl_44028,asmbl_44030	none	STRG.5984.1,STRG.5984.2	2	STRG.5984.4,blat.proc3829873.chain_2048	2
scaffold_8	alt_acceptor	6900634	6900635	+	asmbl_51953,asmbl_51955,asmbl_51956,asmbl_51957	none	STRG.10042.1,blat.proc3829875.chain_2536,blat.proc3829875.chain_2537,blat.proc3829875.chain_2539,blat.proc3829875.chain_2542	5	STRG.10042.2,STRG.10042.3	2
scaffold_17	alternate_exon	5064680	5064851	-	asmbl_18949	none	STRG.20216.2	1	STRG.20216.1,Trinity_GG_28380_c0_g1_i1,blat.proc3829897.chain_1177	3
scaffold_20	retained_intron	11678784	11679288	-	asmbl_27106,asmbl_27108	none	STRG.23659.2,blat.proc3829899.chain_656,blat.proc3829899.chain_659	3	STRG.23659.3,blat.proc3829899.chain_658	2
scaffold_20	skipped_exon	6715123	6717153	+	asmbl_25822	none	STRG.23234.2	1	blat.proc3829883.chain_275	1
scaffold_2	alt_acceptor	14392463	14392464	+	asmbl_24956,asmbl_24957	none	STRG.2437.1,STRG.2437.3,blat.proc3829871.chain_2618,blat.proc3829871.chain_2619	4	STRG.2437.2	1
scaffold_4	alt_acceptor	4417028	4417029	+	asmbl_42576,asmbl_42588,asmbl_42589,asmbl_42593	none	STRG.4344.4,Trinity_GG_2404_c0_g1_i5,blat.proc3829873.chain_680,blat.proc3829873.chain_696,blat.proc3829873.chain_697	5	STRG.4344.1,STRG.4344.2,STRG.4344.3,Trinity_GG_2404_c0_g1_i8,blat.proc3829873.chain_682,blat.proc3829873.chain_683,blat.proc3829873.chain_688,blat.proc3829873.chain_691,blat.proc3829873.chain_695	9
scaffold_8	spliced_intron	11195066	11195193	+	asmbl_52191	none	STRG.10325.2	1	STRG.10325.1,blat.proc3829875.chain_2851	2
scaffold_9	spliced_intron	9470104	9470201	-	asmbl_55145,asmbl_55146,asmbl_55147,asmbl_55149,asmbl_55151	none	STRG.11298.1,STRG.11298.3,blat.proc3829891.chain_3464,blat.proc3829891.chain_3465,blat.proc3829891.chain_3466	5	STRG.11298.2,blat.proc3829891.chain_3467	2
scaffold_14	retained_intron	8371335	8371512	-	asmbl_13280	none	STRG.17259.2	1	STRG.17259.1,Trinity_GG_26687_c1_g1_i1,blat.proc3829895.chain_1951	3
scaffold_10	starts_in_intron	3802994	3802994	+	asmbl_4355	none	Trinity_GG_6781_c0_g1_i1,blat.proc3829877.chain_888	2	STRG.12218.1	1
scaffold_1	retained_intron	12333296	12334265	-	asmbl_710	none	STRG.843.2,Trinity_GG_17459_c1_g1_i2,blat.proc3829887.chain_741,blat.proc3829887.chain_747	4	STRG.843.1	1
scaffold_15	alternate_exon	1681862	1681947	+	asmbl_13967	none	STRG.17960.2	1	STRG.17960.1	1
scaffold_17	spliced_intron	14380546	14380566	+	asmbl_18515	none	STRG.20905.2	1	STRG.20905.1	1
scaffold_3	alt_donor	16176435	16176436	-	asmbl_39437	none	STRG.3898.1,blat.proc3829887.chain_3710	2	STRG.3898.2	1
scaffold_21	alternate_exon	5137359	5139735	-	asmbl_27634,asmbl_27635	none	STRG.24046.1,STRG.24046.4	2	STRG.24046.3	1
scaffold_1	retained_exon	22372438	22372575	+	asmbl_2676,asmbl_2680	none	STRG.1490.2,STRG.1490.4	2	STRG.1490.1	1
scaffold_5	alternate_exon	13098203	13098239	+	asmbl_44526	none	STRG.6535.2	1	STRG.6535.1	1
scaffold_28	alternate_exon	7154424	7154489	+	asmbl_38331,asmbl_38333,asmbl_38334	none	STRG.29751.2,blat.proc3829885.chain_2849,blat.proc3829885.chain_2850,blat.proc3829885.chain_2853	4	STRG.29751.1,blat.proc3829885.chain_2852	2
scaffold_8	starts_in_intron	4871718	4871718	+	asmbl_51854	none	STRG.9943.5	1	STRG.9943.1,STRG.9943.2,STRG.9943.3,STRG.9943.4,blat.proc3829875.chain_2420,blat.proc3829875.chain_2421,blat.proc3829875.chain_2422,blat.proc3829875.chain_2423,blat.proc3829875.chain_2425	9
scaffold_28	alt_donor	1705886	1705887	-	asmbl_37332	none	STRG.29347.1,blat.proc3829901.chain_2393	2	STRG.29347.2	1
scaffold_15	alt_acceptor	2071395	2071396	-	asmbl_14999	none	STRG.17986.2	1	STRG.17986.1	1
scaffold_20	starts_in_intron	2638051	2638051	-	asmbl_26585	none	blat.proc3829897.chain_3717	1	blat.proc3829897.chain_3718	1
scaffold_24	alt_acceptor	8553982	8553983	-	asmbl_33075	none	STRG.26849.2,blat.proc3829901.chain_149	2	STRG.26849.1,blat.proc3829901.chain_150	2
scaffold_11	starts_in_intron	17381898	17381898	-	asmbl_7245	none	blat.proc3829893.chain_2759	1	STRG.14391.1,STRG.14391.2,blat.proc3829893.chain_2760	3
scaffold_16	alt_donor	8589758	8589759	+	asmbl_17209,asmbl_17219,asmbl_17221	none	STRG.19477.1,STRG.19477.7,blat.proc3829881.chain_354,blat.proc3829881.chain_359	4	STRG.19477.3,STRG.19477.8,blat.proc3829881.chain_353	3
scaffold_9	retained_intron	14818996	14819592	-	asmbl_55464	none	blat.proc3829893.chain_5	1	STRG.11693.1,Trinity_GG_23432_c0_g1_i1,blat.proc3829893.chain_10,blat.proc3829893.chain_4	4
scaffold_18	alt_donor	7631645	7631646	-	asmbl_20000,asmbl_20002,asmbl_20003	none	STRG.21453.3,STRG.21453.4,Trinity_GG_29021_c0_g1_i10,blat.proc3829897.chain_2313	4	STRG.21453.2,Trinity_GG_29021_c0_g1_i8,blat.proc3829897.chain_2310,blat.proc3829897.chain_2311,blat.proc3829897.chain_2312,blat.proc3829897.chain_2314	6
scaffold_12	alternate_exon	16437900	16438733	+	asmbl_9148	none	STRG.15389.2	1	STRG.15389.1	1
scaffold_10	alt_donor	6324135	6324136	-	asmbl_3367	none	STRG.12453.3	1	STRG.12453.1,STRG.12453.2,blat.proc3829893.chain_879,blat.proc3829893.chain_880	4
scaffold_14	alt_acceptor	405641	405642	+	asmbl_11723,asmbl_11725,asmbl_11727,asmbl_11728	none	STRG.16722.1,STRG.16722.2,Trinity_GG_9219_c0_g1_i3,blat.proc3829879.chain_1467,blat.proc3829879.chain_1469,blat.proc3829879.chain_1474	6	STRG.16722.3,STRG.16722.5,Trinity_GG_9219_c0_g1_i21,blat.proc3829879.chain_1468,blat.proc3829879.chain_1470	5
scaffold_22	alternate_exon	6130242	6131013	+	asmbl_29390	none	STRG.24955.4,blat.proc3829883.chain_2008	2	STRG.24955.7,blat.proc3829883.chain_2007	2
scaffold_6	retained_intron	2947048	2947168	-	asmbl_48153	none	blat.proc3829889.chain_3306	1	STRG.7294.1,blat.proc3829889.chain_3307	2
scaffold_13	alt_acceptor	2996933	2996934	+	asmbl_10633,asmbl_10634	none	STRG.15589.2,STRG.15589.3	2	STRG.15589.1,Trinity_GG_8581_c0_g1_i3,blat.proc3829879.chain_309,blat.proc3829879.chain_310	4
scaffold_21	spliced_intron	8000621	8001304	-	asmbl_27900	none	STRG.24325.3,blat.proc3829899.chain_1427	2	STRG.24325.4,blat.proc3829899.chain_1428	2
scaffold_18	alt_donor	1955804	1955805	+	asmbl_20421	none	STRG.21076.2,Trinity_GG_11610_c0_g1_i1,blat.proc3829881.chain_1973	3	Trinity_GG_11610_c0_g1_i2,blat.proc3829881.chain_1972	2
scaffold_1	starts_in_intron	12461910	12461910	-	asmbl_730	none	blat.proc3829887.chain_732	1	STRG.864.1,STRG.864.2,STRG.864.3,STRG.864.4,blat.proc3829887.chain_728	5
scaffold_18	retained_intron	5583163	5583302	+	asmbl_20621	none	STRG.21298.1,Trinity_GG_11734_c0_g1_i1,Trinity_GG_11734_c0_g1_i2,Trinity_GG_11734_c1_g1_i1,blat.proc3829881.chain_2221,blat.proc3829881.chain_2222,blat.proc3829881.chain_2223	7	STRG.21298.2	1
scaffold_2	alternate_exon	5704789	5707897	-	asmbl_23180,asmbl_23181,asmbl_23184	none	STRG.1957.1,STRG.1957.2,blat.proc3829887.chain_1851,blat.proc3829887.chain_1852,blat.proc3829887.chain_1853	5	STRG.1957.3	1
scaffold_4	spliced_intron	12571017	12571255	-	asmbl_41674	none	STRG.4898.1,blat.proc3829889.chain_965	2	blat.proc3829889.chain_967	1
scaffold_21	alternate_exon	705871	705966	-	asmbl_27380	none	Trinity_GG_30242_c0_g1_i8,blat.proc3829899.chain_813	2	Trinity_GG_30242_c0_g1_i4,blat.proc3829899.chain_812	2
scaffold_25	skipped_exon	4467225	4469133	-	asmbl_34174	none	STRG.27360.1	1	STRG.27360.2	1
scaffold_3	ends_in_intron	6247399	6247399	-	asmbl_38892	none	blat.proc3829887.chain_3033	1	STRG.3263.1,STRG.3263.2,STRG.3263.7,blat.proc3829887.chain_3031,blat.proc3829887.chain_3032,blat.proc3829887.chain_3035	6
scaffold_23	alt_acceptor	2590645	2590646	-	asmbl_31462,asmbl_31464	none	STRG.25705.5,blat.proc3829899.chain_2748	2	STRG.25705.1,STRG.25705.2,blat.proc3829899.chain_2747,blat.proc3829899.chain_2749	4
scaffold_17	alternate_exon	12200488	12207093	+	asmbl_18403	none	STRG.20743.2	1	STRG.20743.5,Trinity_GG_11385_c2_g1_i1,blat.proc3829881.chain_1579	3
scaffold_1	retained_intron	5207308	5207851	+	asmbl_1711,asmbl_1713	none	blat.proc3829871.chain_393,blat.proc3829871.chain_395	2	STRG.323.3	1
scaffold_4	alternate_exon	4415345	4417774	+	asmbl_42580,asmbl_42589	none	STRG.4344.2,STRG.4344.4,blat.proc3829873.chain_683	3	blat.proc3829873.chain_693	1
scaffold_5	ends_in_intron	14259791	14259791	+	asmbl_44587	none	blat.proc3829873.chain_2768	1	STRG.6629.1,STRG.6629.2,Trinity_GG_3625_c0_g1_i10,blat.proc3829873.chain_2763,blat.proc3829873.chain_2764,blat.proc3829873.chain_2767,blat.proc3829873.chain_2769	7
scaffold_23	starts_in_intron	7691677	7691677	+	asmbl_31017	none	Trinity_GG_14399_c0_g1_i2,blat.proc3829883.chain_2963	2	STRG.26062.1,STRG.26062.2	2
scaffold_20	skipped_exon	11085396	11086156	-	asmbl_27060	none	STRG.23609.3,Trinity_GG_30167_c1_g1_i2,blat.proc3829899.chain_616	3	STRG.23609.1,Trinity_GG_30167_c1_g1_i1,blat.proc3829899.chain_618	3
scaffold_6	starts_in_intron	9100277	9100277	+	asmbl_47141	none	blat.proc3829875.chain_163	1	STRG.7781.1,STRG.7781.2,STRG.7781.3,blat.proc3829875.chain_162	4
scaffold_2	spliced_intron	949181	949507	+	asmbl_24187,asmbl_24188,asmbl_24189	none	STRG.1574.1,STRG.1574.2,STRG.1574.3,blat.proc3829871.chain_1645,blat.proc3829871.chain_1649	5	blat.proc3829871.chain_1651	1
scaffold_18	skipped_exon	11912994	11914248	+	asmbl_20977	none	STRG.21685.2,blat.proc3829881.chain_2645	2	STRG.21685.1	1
scaffold_11	starts_in_intron	11067855	11067855	+	asmbl_5923	none	Trinity_GG_7753_c0_g1_i1,blat.proc3829877.chain_2549	2	STRG.14059.1,Trinity_GG_7753_c0_g1_i3,blat.proc3829877.chain_2550	3
scaffold_13	starts_in_intron	362511	362511	-	asmbl_9281	none	Trinity_GG_25666_c0_g1_i13,blat.proc3829895.chain_157	2	STRG.15426.1,STRG.15426.3,STRG.15426.4,STRG.15426.5,Trinity_GG_25666_c0_g1_i10,Trinity_GG_25666_c0_g1_i11,Trinity_GG_25666_c0_g1_i14,Trinity_GG_25666_c0_g1_i3,Trinity_GG_25666_c0_g1_i6,Trinity_GG_25666_c0_g1_i8,blat.proc3829895.chain_155,blat.proc3829895.chain_156,blat.proc3829895.chain_159,blat.proc3829895.chain_161,blat.proc3829895.chain_163,blat.proc3829895.chain_165	16
scaffold_20	alt_acceptor	5552028	5552029	-	asmbl_26688,asmbl_26689	none	STRG.23165.3,blat.proc3829899.chain_203,blat.proc3829899.chain_204,blat.proc3829899.chain_205,blat.proc3829899.chain_206	5	STRG.23165.1,STRG.23165.2	2
scaffold_4	alt_acceptor	3272747	3272748	+	asmbl_42488	none	blat.proc3829873.chain_514	1	STRG.4252.1,blat.proc3829873.chain_515,blat.proc3829873.chain_517	3
scaffold_1	ends_in_intron	5740773	5740773	+	asmbl_1768	none	blat.proc3829871.chain_372	1	STRG.382.2,blat.proc3829871.chain_370,blat.proc3829871.chain_371,blat.proc3829871.chain_373,blat.proc3829871.chain_375	5
scaffold_1	spliced_intron	1992066	1992263	+	asmbl_1522	none	STRG.126.2	1	STRG.126.1,Trinity_GG_103_c2_g1_i2,blat.proc3829871.chain_180	3
scaffold_14	spliced_intron	6645283	6645363	-	asmbl_13125,asmbl_13126	none	STRG.17095.1,STRG.17095.3	2	STRG.17095.2	1
scaffold_15	alt_donor	9856865	9856866	-	asmbl_15433	none	STRG.18491.4	1	STRG.18491.1,STRG.18491.2,STRG.18491.3	3
scaffold_10	starts_in_intron	12798117	12798117	-	asmbl_3729	none	blat.proc3829893.chain_1359	1	STRG.12855.2,STRG.12855.3,blat.proc3829893.chain_1360	3
scaffold_3	starts_in_intron	4683948	4683948	+	asmbl_39987	none	Trinity_GG_1806_c2_g1_i1,blat.proc3829871.chain_3383	2	STRG.3162.2	1
scaffold_25	starts_in_intron	182006	182006	-	asmbl_33945	none	blat.proc3829901.chain_359	1	STRG.27032.1,blat.proc3829901.chain_358	2
scaffold_13	retained_intron	4602269	4602712	-	asmbl_9602,asmbl_9609	none	STRG.15781.2,Trinity_GG_25880_c0_g1_i6,blat.proc3829895.chain_528,blat.proc3829895.chain_531	4	Trinity_GG_25880_c0_g1_i1,blat.proc3829895.chain_530	2
scaffold_21	alternate_exon	705871	706526	-	asmbl_27377	none	STRG.23751.1,Trinity_GG_30242_c0_g2_i1,blat.proc3829899.chain_811,blat.proc3829899.chain_818	4	Trinity_GG_30242_c0_g1_i4,blat.proc3829899.chain_812	2
scaffold_2	alternate_exon	6906166	6906418	+	asmbl_24542,asmbl_24546	none	STRG.2036.2,blat.proc3829871.chain_2019	2	STRG.2036.3	1
scaffold_13	alt_acceptor	12253768	12253769	+	asmbl_11328,asmbl_11329	none	STRG.16339.1,STRG.16339.2,Trinity_GG_8947_c0_g1_i1,Trinity_GG_8947_c0_g1_i3,blat.proc3829879.chain_1006,blat.proc3829879.chain_1007	6	STRG.16339.3,blat.proc3829879.chain_1005	2
scaffold_25	spliced_intron	548373	548401	+	asmbl_33330	none	STRG.27085.2	1	STRG.27085.1	1
scaffold_18	retained_intron	1862478	1862581	-	asmbl_19683	none	STRG.21063.2,Trinity_GG_28762_c0_g1_i3,blat.proc3829897.chain_1840	3	STRG.21063.1,STRG.21063.3,blat.proc3829897.chain_1841,blat.proc3829897.chain_1842	4
scaffold_17	spliced_intron	13467626	13467758	-	asmbl_19416	none	STRG.20813.1,blat.proc3829897.chain_1744	2	STRG.20813.2,blat.proc3829897.chain_1745	2
scaffold_28	alt_donor	2267845	2267846	-	asmbl_37346,asmbl_37349,asmbl_37351	none	STRG.29380.1,STRG.29380.3,Trinity_GG_33458_c0_g1_i4,blat.proc3829901.chain_2467,blat.proc3829901.chain_2468,blat.proc3829901.chain_2469	6	STRG.29380.2,blat.proc3829901.chain_2470	2
scaffold_4	spliced_intron	9998114	9998655	+	asmbl_42973,asmbl_42975,asmbl_42976	none	STRG.4763.1,blat.proc3829873.chain_1113,blat.proc3829873.chain_1114,blat.proc3829873.chain_1115	4	STRG.4763.2,STRG.4763.4,Trinity_GG_2650_c0_g1_i1,blat.proc3829873.chain_1112,blat.proc3829873.chain_1116	5
scaffold_5	alternate_exon	19031504	19037457	-	asmbl_46259,asmbl_46260,asmbl_46261	none	STRG.7018.3,STRG.7018.4,STRG.7018.5,Trinity_GG_20922_c1_g1_i1,blat.proc3829889.chain_3006,blat.proc3829889.chain_3009,blat.proc3829889.chain_3011	7	STRG.7018.1	1
scaffold_14	ends_in_intron	3102656	3102656	+	asmbl_11874	none	blat.proc3829879.chain_1607	1	STRG.16886.1	1
scaffold_12	alt_acceptor	16247327	16247328	+	asmbl_9118	none	STRG.15363.2,Trinity_GG_8439_c0_g1_i3,blat.proc3829879.chain_15	3	STRG.15363.1,Trinity_GG_8439_c0_g1_i2,blat.proc3829879.chain_17	3
scaffold_6	retained_exon	14594006	14594041	+	asmbl_47568	none	STRG.8213.3	1	STRG.8213.1,blat.proc3829875.chain_640	2
scaffold_11	starts_in_intron	8719065	8719065	-	asmbl_6855	none	blat.proc3829893.chain_2334	1	STRG.13887.1,blat.proc3829893.chain_2332,blat.proc3829893.chain_2333	3
scaffold_13	retained_exon	3705325	3705935	-	asmbl_9523	none	STRG.15671.5,blat.proc3829895.chain_438	2	STRG.15671.3	1
scaffold_15	retained_intron	2434220	2434241	-	asmbl_15011	none	Trinity_GG_27090_c0_g1_i5	1	blat.proc3829895.chain_2649	1
scaffold_16	starts_in_intron	11345200	11345200	-	asmbl_16516	none	blat.proc3829897.chain_626	1	STRG.19654.1,blat.proc3829897.chain_625	2
scaffold_18	ends_in_intron	9259140	9259140	-	asmbl_20096	none	Trinity_GG_29070_c0_g1_i3,blat.proc3829897.chain_2413	2	STRG.21559.1,STRG.21559.4,Trinity_GG_29070_c0_g1_i5,blat.proc3829897.chain_2410	4
scaffold_2	alt_donor	5073745	5073746	-	asmbl_23152	none	STRG.1922.4	1	STRG.1922.2,blat.proc3829887.chain_1822	2
scaffold_11	starts_in_intron	7897646	7897646	+	asmbl_5660	none	Trinity_GG_7591_c0_g1_i1	1	STRG.13779.1,Trinity_GG_7591_c0_g1_i2	2
scaffold_8	spliced_intron	16499427	16499685	-	asmbl_53413,asmbl_53415,asmbl_53416,asmbl_53422,asmbl_53430	none	STRG.10621.1,Trinity_GG_22960_c0_g1_i18,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2857,blat.proc3829891.chain_2864,blat.proc3829891.chain_2868,blat.proc3829891.chain_2870	8	STRG.10621.3,STRG.10621.4,blat.proc3829891.chain_2859,blat.proc3829891.chain_2862,blat.proc3829891.chain_2865,blat.proc3829891.chain_2871	6
scaffold_6	alt_donor	11483459	11483460	+	asmbl_47263,asmbl_47264,asmbl_47267,asmbl_47268,asmbl_47270,asmbl_47271	none	STRG.7936.1,STRG.7936.2,STRG.7936.3,blat.proc3829875.chain_299,blat.proc3829875.chain_300,blat.proc3829875.chain_301,blat.proc3829875.chain_302,blat.proc3829875.chain_304	8	STRG.7936.4	1
scaffold_14	retained_intron	6596360	6596436	+	asmbl_12070	none	Trinity_GG_9390_c0_g1_i2,blat.proc3829879.chain_1790	2	Trinity_GG_9390_c0_g1_i1,blat.proc3829879.chain_1791	2
scaffold_3	spliced_intron	18346320	18346422	-	asmbl_39560	none	STRG.4038.1,blat.proc3829889.chain_77	2	blat.proc3829873.chain_417	1
scaffold_23	alternate_exon	4100043	4100213	-	asmbl_31555	none	blat.proc3829899.chain_2935	1	STRG.25802.2	1
scaffold_20	spliced_intron	6975652	6975749	+	asmbl_25840	none	STRG.23248.2,blat.proc3829883.chain_383	2	blat.proc3829883.chain_382	1
scaffold_12	ends_in_intron	14188443	14188443	-	asmbl_8126	none	Trinity_GG_25548_c2_g1_i1,blat.proc3829893.chain_3688	2	STRG.15242.1	1
scaffold_8	alternate_exon	9819913	9820436	+	asmbl_52095	none	blat.proc3829875.chain_2661	1	STRG.10222.1,blat.proc3829875.chain_2663	2
scaffold_6	starts_in_intron	5055216	5055216	-	asmbl_48332	none	blat.proc3829889.chain_3506	1	STRG.7479.1,STRG.7479.2,STRG.7479.3,blat.proc3829889.chain_3508,blat.proc3829889.chain_3509	5
scaffold_1	retained_intron	1041790	1043520	+	asmbl_1448	none	STRG.62.1,Trinity_GG_5_c0_g1_i4,Trinity_GG_5_c0_g1_i6,blat.proc3829871.chain_9	4	STRG.62.2,blat.proc3829871.chain_11	2
scaffold_17	retained_exon	9973649	9973666	+	asmbl_18269,asmbl_18270	none	STRG.20603.2,blat.proc3829881.chain_1444	2	STRG.20603.3	1
scaffold_25	alt_acceptor	4453710	4453711	-	asmbl_34172	none	STRG.27358.2	1	STRG.27358.3	1
scaffold_6	alt_acceptor	13735268	13735269	+	asmbl_47468,asmbl_47469	none	STRG.8124.1,STRG.8124.2,blat.proc3829875.chain_476,blat.proc3829875.chain_477	4	STRG.8124.3	1
scaffold_5	alternate_exon	17225169	17225757	+	asmbl_44813	none	blat.proc3829873.chain_3028	1	STRG.6887.1,blat.proc3829873.chain_3033	2
scaffold_26	ends_in_intron	3622825	3622825	+	asmbl_35336	none	STRG.28026.1,blat.proc3829885.chain_997	2	STRG.28026.2,blat.proc3829885.chain_998	2
scaffold_12	alternate_exon	16521604	16529748	-	asmbl_8267	none	STRG.15397.1,Trinity_GG_25644_c0_g1_i2,blat.proc3829895.chain_122	3	Trinity_GG_25644_c0_g1_i1,blat.proc3829895.chain_121	2
scaffold_6	starts_in_intron	13225544	13225544	+	asmbl_47444,asmbl_47445,asmbl_47447,asmbl_47448	none	STRG.8077.3,STRG.8077.4,STRG.8077.5,blat.proc3829875.chain_500,blat.proc3829875.chain_501,blat.proc3829875.chain_504	6	STRG.8077.1,STRG.8077.2,blat.proc3829875.chain_505,blat.proc3829875.chain_506	4
scaffold_14	alt_acceptor	8046530	8046531	+	asmbl_12182	none	STRG.17213.1,blat.proc3829879.chain_1961	2	STRG.17213.2	1
scaffold_1	alt_acceptor	19359455	19359456	+	asmbl_2578	none	STRG.1346.2	1	STRG.1346.1,Trinity_GG_788_c0_g1_i2,blat.proc3829871.chain_1388	3
scaffold_17	spliced_intron	11568197	11568238	+	asmbl_18359,asmbl_18360	none	STRG.20693.3,STRG.20693.4	2	STRG.20693.1,STRG.20693.2	2
scaffold_9	retained_intron	12438282	12438337	+	asmbl_54412	none	STRG.11546.1,Trinity_GG_6451_c0_g1_i1,blat.proc3829877.chain_329	3	STRG.11546.2	1
scaffold_7	spliced_intron	9708727	9708817	-	asmbl_49867	none	STRG.9148.1,blat.proc3829891.chain_1338	2	STRG.9148.2	1
scaffold_12	alt_acceptor	3693559	3693560	+	asmbl_8529	none	STRG.14563.2	1	STRG.14563.1,Trinity_GG_8045_c0_g1_i2,blat.proc3829877.chain_3055	3
scaffold_27	starts_in_intron	3091651	3091651	-	asmbl_36845	none	blat.proc3829901.chain_1950	1	STRG.28775.1,STRG.28775.2,STRG.28775.3,STRG.28775.4,STRG.28775.5,blat.proc3829901.chain_1946,blat.proc3829901.chain_1947,blat.proc3829901.chain_1948,blat.proc3829901.chain_1951	9
scaffold_21	skipped_exon	3126012	3126710	-	asmbl_27539	none	STRG.23930.5,blat.proc3829899.chain_979	2	STRG.23930.4,Trinity_GG_30335_c0_g1_i6,blat.proc3829899.chain_977,blat.proc3829899.chain_981	4
scaffold_18	alt_donor	1894711	1894712	-	asmbl_19690,asmbl_19696,asmbl_19697,asmbl_19698,asmbl_19703,asmbl_19704,asmbl_19705,asmbl_19706	none	blat.proc3829897.chain_1890,blat.proc3829897.chain_1891,blat.proc3829897.chain_1893,blat.proc3829897.chain_1895,blat.proc3829897.chain_1897,blat.proc3829897.chain_1898,blat.proc3829897.chain_1899,blat.proc3829897.chain_1901,blat.proc3829897.chain_1902	9	STRG.21072.2,STRG.21072.4,STRG.21072.6	3
scaffold_22	retained_exon	3790472	3790504	-	asmbl_29950,asmbl_29953	none	STRG.24796.3,blat.proc3829899.chain_1847,blat.proc3829899.chain_1848	3	STRG.24796.1,STRG.24796.2	2
scaffold_13	spliced_intron	360693	360785	-	asmbl_9275,asmbl_9276,asmbl_9283,asmbl_9284,asmbl_9285,asmbl_9287,asmbl_9288	none	STRG.15426.1,STRG.15426.3,STRG.15426.4,STRG.15426.5,Trinity_GG_25666_c0_g1_i10,Trinity_GG_25666_c0_g1_i11,Trinity_GG_25666_c0_g1_i14,Trinity_GG_25666_c0_g1_i6,Trinity_GG_25666_c0_g1_i8,blat.proc3829895.chain_155,blat.proc3829895.chain_156,blat.proc3829895.chain_159,blat.proc3829895.chain_161,blat.proc3829895.chain_163	14	STRG.15426.2,Trinity_GG_25666_c0_g1_i3,Trinity_GG_25666_c0_g2_i1,blat.proc3829895.chain_165,blat.proc3829895.chain_166	5
scaffold_21	alt_acceptor	1802885	1802886	+	asmbl_28387	none	blat.proc3829883.chain_975	1	STRG.23808.1,STRG.23808.2,blat.proc3829883.chain_976,blat.proc3829883.chain_977	4
scaffold_17	starts_in_intron	8564633	8564633	-	asmbl_19148	none	blat.proc3829897.chain_1408	1	STRG.20459.1,blat.proc3829897.chain_1407	2
scaffold_12	retained_intron	9002159	9002285	-	asmbl_7763	none	blat.proc3829893.chain_3267	1	blat.proc3829893.chain_3268	1
scaffold_20	alt_acceptor	967173	967174	+	asmbl_25549	none	STRG.22792.2,Trinity_GG_12589_c0_g1_i4	2	STRG.22792.3,Trinity_GG_12589_c0_g1_i3	2
scaffold_9	alt_acceptor	11829824	11829825	-	asmbl_55285	none	STRG.11487.1	1	STRG.11487.2	1
scaffold_16	alt_donor	1123802	1123803	-	asmbl_16099	none	STRG.19066.2,blat.proc3829897.chain_120	2	STRG.19066.1	1
scaffold_1	spliced_intron	5750406	5750501	+	asmbl_1775,asmbl_1776,asmbl_1777,asmbl_1778	none	STRG.373.1,STRG.373.2,STRG.373.3,blat.proc3829871.chain_435,blat.proc3829871.chain_437,blat.proc3829871.chain_438	6	blat.proc3829871.chain_439	1
scaffold_21	alternate_exon	9926758	9930761	-	asmbl_28013	none	STRG.24446.5	1	STRG.24446.2,blat.proc3829899.chain_1515	2
scaffold_15	retained_exon	4231073	4231184	+	asmbl_14071,asmbl_14072	none	STRG.18160.2,blat.proc3829879.chain_2806,blat.proc3829879.chain_2808	3	STRG.18160.1,blat.proc3829879.chain_2809,blat.proc3829879.chain_2810,blat.proc3829879.chain_2813,blat.proc3829879.chain_2814	5
scaffold_19	starts_in_intron	6106952	6106952	+	asmbl_22191	none	blat.proc3829881.chain_3085	1	STRG.22128.1,blat.proc3829881.chain_3084	2
scaffold_7	alternate_exon	11151143	11151188	+	asmbl_51036	none	STRG.9249.1,Trinity_GG_5128_c0_g1_i1,blat.proc3829875.chain_1688	3	STRG.9249.2,STRG.9249.3,Trinity_GG_5128_c0_g1_i2,blat.proc3829875.chain_1687	4
scaffold_9	starts_in_intron	3665108	3665108	+	asmbl_53891	none	Trinity_GG_6100_c0_g1_i1	1	STRG.10962.2,blat.proc3829875.chain_3441	2
scaffold_17	alternate_exon	7849258	7849473	+	asmbl_18056	none	STRG.20399.3	1	STRG.20399.2,blat.proc3829881.chain_1176	2
scaffold_25	ends_in_intron	3763350	3763350	+	asmbl_33463	none	Trinity_GG_15061_c0_g1_i1,Trinity_GG_15061_c0_g1_i2	2	STRG.27314.1,blat.proc3829885.chain_350	2
scaffold_22	starts_in_intron	7755694	7755694	+	asmbl_29507	none	Trinity_GG_13898_c0_g1_i3,blat.proc3829883.chain_2167	2	STRG.25100.1,blat.proc3829883.chain_2166	2
scaffold_21	retained_intron	8529229	8529354	+	asmbl_28832	none	blat.proc3829883.chain_1393	1	STRG.24375.1,blat.proc3829883.chain_1389,blat.proc3829883.chain_1391,blat.proc3829883.chain_1392	4
scaffold_4	retained_exon	5651380	5651422	-	asmbl_41352,asmbl_41357,asmbl_41363,asmbl_41365,asmbl_41366,asmbl_41369	none	STRG.4469.2,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_608,blat.proc3829889.chain_611,blat.proc3829889.chain_612	6	STRG.4469.3,blat.proc3829889.chain_607	2
scaffold_17	alternate_exon	13171853	13171884	-	asmbl_19400	none	Trinity_GG_28701_c0_g1_i1,blat.proc3829897.chain_1726	2	STRG.20795.1,blat.proc3829897.chain_1725	2
scaffold_9	alternate_exon	11796762	11797044	-	asmbl_55268,asmbl_55269,asmbl_55271	none	STRG.11484.1,STRG.11484.2,blat.proc3829891.chain_3590,blat.proc3829891.chain_3591,blat.proc3829891.chain_3593	5	STRG.11484.3,STRG.11484.5,Trinity_GG_23344_c1_g1_i1,blat.proc3829891.chain_3592,blat.proc3829891.chain_3595	5
scaffold_9	alternate_exon	15496424	15504152	-	asmbl_55497	none	STRG.11737.3,blat.proc3829893.chain_117	2	STRG.11737.2,blat.proc3829893.chain_121	2
scaffold_23	starts_in_intron	2587001	2587001	-	asmbl_31463	none	Trinity_GG_31351_c1_g1_i6	1	STRG.25705.2,blat.proc3829899.chain_2749	2
scaffold_25	alt_acceptor	6073591	6073592	-	asmbl_34288,asmbl_34297	none	STRG.27475.2,blat.proc3829901.chain_726	2	STRG.27475.1,blat.proc3829901.chain_724,blat.proc3829901.chain_725	3
scaffold_12	starts_in_intron	8556920	8556920	+	asmbl_8786	none	Trinity_GG_8236_c0_g1_i3,blat.proc3829877.chain_3404	2	STRG.14871.1,blat.proc3829877.chain_3401,blat.proc3829877.chain_3403	3
scaffold_2	alt_acceptor	3884036	3884037	-	asmbl_23040	none	STRG.1822.1,blat.proc3829887.chain_1569	2	STRG.1822.2,blat.proc3829887.chain_1570	2
scaffold_15	spliced_intron	15502347	15502438	+	asmbl_14751,asmbl_14753,asmbl_14754,asmbl_14755,asmbl_14756,asmbl_14757	none	STRG.18940.1,STRG.18940.2,Trinity_GG_10382_c0_g1_i1,Trinity_GG_10382_c0_g1_i2,Trinity_GG_10382_c0_g1_i3,Trinity_GG_10382_c0_g1_i5,blat.proc3829879.chain_3532,blat.proc3829879.chain_3533,blat.proc3829879.chain_3534,blat.proc3829879.chain_3535,blat.proc3829879.chain_3537	11	Trinity_GG_10382_c0_g1_i6,blat.proc3829879.chain_3536	2
scaffold_26	starts_in_intron	4324247	4324247	-	asmbl_34818	none	blat.proc3829901.chain_1305	1	STRG.28149.1,STRG.28149.2,STRG.28149.3,STRG.28149.4,blat.proc3829901.chain_1311	5
scaffold_26	starts_in_intron	4529300	4529300	-	asmbl_34833	none	blat.proc3829901.chain_1298	1	blat.proc3829901.chain_1299	1
scaffold_8	alt_acceptor	11711669	11711670	-	asmbl_53153	none	STRG.10359.2	1	STRG.10359.1,Trinity_GG_22742_c0_g1_i1,blat.proc3829891.chain_2444	3
scaffold_6	starts_in_intron	8585167	8585167	+	asmbl_47094	none	Trinity_GG_4242_c0_g1_i1,blat.proc3829875.chain_97	2	STRG.7733.1,STRG.7733.2,blat.proc3829875.chain_99	3
scaffold_5	retained_intron	14124759	14124862	-	asmbl_45969	none	blat.proc3829873.chain_2715	1	STRG.6617.1	1
scaffold_13	ends_in_intron	364719	364719	-	asmbl_9279	none	Trinity_GG_25666_c0_g1_i12,blat.proc3829895.chain_158	2	STRG.15426.4,Trinity_GG_25666_c0_g1_i10,blat.proc3829895.chain_156	3
scaffold_27	alternate_exon	329629	329670	-	asmbl_36622	none	STRG.28541.2,blat.proc3829901.chain_1723	2	STRG.28541.1,Trinity_GG_32973_c0_g1_i4,blat.proc3829901.chain_1722	3
scaffold_24	spliced_intron	9121547	9121613	+	asmbl_32519	none	STRG.26917.2	1	blat.proc3829885.chain_21,blat.proc3829885.chain_23	2
scaffold_19	alt_acceptor	8734050	8734051	-	asmbl_21515	none	STRG.22309.2	1	STRG.22309.1,blat.proc3829897.chain_3015	2
scaffold_1	spliced_intron	5738505	5739159	+	asmbl_1770	none	blat.proc3829871.chain_371	1	blat.proc3829871.chain_370,blat.proc3829871.chain_375	2
scaffold_7	starts_in_intron	6656964	6656964	-	asmbl_49743	none	blat.proc3829891.chain_1262	1	STRG.8934.1,blat.proc3829891.chain_1261,blat.proc3829891.chain_1263	3
scaffold_17	retained_exon	3675	3812	+	asmbl_17658	none	STRG.19872.2,Trinity_GG_10890_c0_g1_i1,blat.proc3829881.chain_723	3	STRG.19872.1,STRG.19872.3,Trinity_GG_10890_c0_g1_i2,blat.proc3829881.chain_724	4
scaffold_15	spliced_intron	15416820	15416897	-	asmbl_15794	none	STRG.18923.5,blat.proc3829895.chain_3621	2	blat.proc3829895.chain_3620	1
scaffold_27	skipped_exon	3920125	3920693	-	asmbl_36892	none	STRG.28837.2	1	STRG.28837.1,blat.proc3829901.chain_2030	2
scaffold_10	retained_intron	13279609	13280597	+	asmbl_4861	none	Trinity_GG_7120_c0_g1_i2,blat.proc3829877.chain_1487	2	Trinity_GG_7120_c0_g1_i1,blat.proc3829877.chain_1486	2
scaffold_1	retained_intron	1420788	1420966	-	asmbl_66	none	Trinity_GG_17059_c0_g1_i2,blat.proc3829885.chain_3744	2	STRG.87.1,Trinity_GG_17059_c0_g1_i1,blat.proc3829885.chain_3745	3
scaffold_5	starts_in_intron	4537688	4537688	+	asmbl_43936	none	blat.proc3829873.chain_1988	1	STRG.5897.1,blat.proc3829873.chain_1987	2
scaffold_22	spliced_intron	504668	504905	-	asmbl_29854,asmbl_29862,asmbl_29863,asmbl_29865,asmbl_29867	none	STRG.24685.1,STRG.24685.2,blat.proc3829899.chain_1821,blat.proc3829899.chain_1823,blat.proc3829899.chain_1824,blat.proc3829899.chain_1829,blat.proc3829899.chain_1831	7	blat.proc3829899.chain_1826,blat.proc3829899.chain_1834	2
scaffold_15	spliced_intron	6080293	6080419	-	asmbl_15252	none	STRG.18259.1,blat.proc3829895.chain_3029	2	blat.proc3829895.chain_3028	1
scaffold_17	alt_acceptor	7076530	7076531	+	asmbl_18024	none	STRG.20370.2	1	STRG.20370.1,blat.proc3829881.chain_1138	2
scaffold_14	alt_donor	6367794	6367795	+	asmbl_12050,asmbl_12051	none	STRG.17069.1,Trinity_GG_9405_c0_g1_i3,blat.proc3829879.chain_1817,blat.proc3829879.chain_1818	4	STRG.17069.2,blat.proc3829879.chain_1816	2
scaffold_7	retained_exon	12448129	12449110	-	asmbl_50036,asmbl_50037,asmbl_50039,asmbl_50042,asmbl_50044	none	STRG.9342.1,STRG.9342.2,Trinity_GG_22282_c1_g1_i12,Trinity_GG_22282_c1_g1_i7,blat.proc3829891.chain_1607,blat.proc3829891.chain_1608,blat.proc3829891.chain_1610,blat.proc3829891.chain_1611	8	STRG.9342.3,STRG.9342.4,blat.proc3829891.chain_1605	3
scaffold_12	alt_donor	7173495	7173496	+	asmbl_8683,asmbl_8684,asmbl_8685,asmbl_8687	none	STRG.14775.1,STRG.14775.2,blat.proc3829877.chain_3240,blat.proc3829877.chain_3241,blat.proc3829877.chain_3243	5	blat.proc3829877.chain_3242	1
scaffold_9	alt_donor	6743445	6743446	-	asmbl_55032,asmbl_55035	none	STRG.11176.1,blat.proc3829891.chain_3303,blat.proc3829891.chain_3304	3	STRG.11176.2	1
scaffold_3	alt_acceptor	14364996	14364997	-	asmbl_39314	none	STRG.3774.1,Trinity_GG_19095_c0_g1_i1,blat.proc3829887.chain_3557	3	STRG.3774.2	1
scaffold_11	alt_acceptor	15631598	15631599	+	asmbl_6098	none	blat.proc3829877.chain_2775	1	STRG.14287.1,STRG.14287.2,blat.proc3829877.chain_2773,blat.proc3829877.chain_2774	4
scaffold_2	alternate_exon	888816	889459	+	asmbl_24147,asmbl_24148,asmbl_24150,asmbl_24152	none	STRG.1564.1,STRG.1564.2,STRG.1564.4,STRG.1564.5	4	blat.proc3829871.chain_1547	1
scaffold_4	starts_in_intron	10448834	10448834	-	asmbl_41592	none	blat.proc3829889.chain_832	1	STRG.4795.1,STRG.4795.2,STRG.4795.3,blat.proc3829889.chain_833,blat.proc3829889.chain_835,blat.proc3829889.chain_838,blat.proc3829889.chain_839	7
scaffold_6	alternate_exon	8172829	8173203	-	asmbl_48481	none	blat.proc3829889.chain_3715	1	Trinity_GG_21366_c0_g1_i3,blat.proc3829889.chain_3717	2
scaffold_5	alt_acceptor	18697627	18697628	-	asmbl_46229	none	STRG.6987.1	1	STRG.6987.2,STRG.6987.3	2
scaffold_12	alt_acceptor	8891886	8891887	+	asmbl_8799	none	STRG.14881.1,Trinity_GG_8240_c0_g1_i1,blat.proc3829877.chain_3411	3	STRG.14881.2,STRG.14881.3,Trinity_GG_8240_c0_g1_i2,blat.proc3829877.chain_3412	4
scaffold_300	spliced_intron	1280	1588	+	asmbl_40851	none	STRG.30247.2	1	STRG.30247.3,blat.proc3829885.chain_3279	2
scaffold_2	skipped_exon	16860835	16861593	+	asmbl_25181	none	STRG.2599.3,blat.proc3829871.chain_2829	2	STRG.2599.1,STRG.2599.2,blat.proc3829871.chain_2828,blat.proc3829871.chain_2831	4
scaffold_9	alt_acceptor	9656291	9656292	+	asmbl_54208	none	blat.proc3829877.chain_99	1	blat.proc3829877.chain_101	1
scaffold_15	alt_donor	2564009	2564010	+	asmbl_14006,asmbl_14008	none	STRG.18036.3,Trinity_GG_9908_c0_g1_i9	2	STRG.18036.1,Trinity_GG_9908_c0_g1_i6	2
scaffold_13	retained_intron	5506761	5506941	+	asmbl_10840,asmbl_10841	none	STRG.15830.1,STRG.15830.3,Trinity_GG_8666_c0_g1_i1,Trinity_GG_8666_c0_g1_i4,blat.proc3829879.chain_461,blat.proc3829879.chain_463	6	STRG.15830.2,Trinity_GG_8666_c0_g1_i2,blat.proc3829879.chain_460	3
scaffold_21	spliced_intron	1654469	1654866	+	asmbl_28368,asmbl_28369	none	STRG.23807.1,Trinity_GG_13211_c0_g1_i2,Trinity_GG_13211_c0_g1_i6,blat.proc3829883.chain_988,blat.proc3829883.chain_990	5	Trinity_GG_13211_c0_g1_i3,Trinity_GG_13211_c0_g1_i7,blat.proc3829883.chain_989,blat.proc3829883.chain_992	4
scaffold_1	retained_exon	13634813	13634919	+	asmbl_2295	none	STRG.978.2	1	STRG.978.3,blat.proc3829871.chain_1056	2
scaffold_24	alt_acceptor	2515024	2515025	+	asmbl_32113	none	STRG.26452.4,blat.proc3829883.chain_3354	2	STRG.26452.1,STRG.26452.2,blat.proc3829883.chain_3355	3
scaffold_26	starts_in_intron	1890817	1890817	-	asmbl_34697	none	blat.proc3829901.chain_1161	1	STRG.27919.1,blat.proc3829901.chain_1160	2
scaffold_5	ends_in_intron	1631839	1631839	+	asmbl_43803	none	STRG.5712.2,blat.proc3829873.chain_1886	2	STRG.5712.1	1
scaffold_26	retained_intron	6350832	6351171	-	asmbl_34955	none	STRG.28315.1,blat.proc3829901.chain_1401	2	STRG.28315.3,blat.proc3829901.chain_1404	2
scaffold_21	alt_acceptor	11346118	11346119	-	asmbl_28148,asmbl_28149	none	STRG.24599.1,STRG.24599.3	2	STRG.24599.2	1
scaffold_7	alt_donor	6878283	6878284	+	asmbl_50759	none	STRG.8936.2	1	STRG.8936.1	1
scaffold_5	alt_acceptor	6627536	6627537	-	asmbl_45510	none	STRG.6058.2	1	STRG.6058.1,blat.proc3829889.chain_2094,blat.proc3829889.chain_2095	3
scaffold_4	retained_exon	5230622	5230742	-	asmbl_41310	none	STRG.4417.5,blat.proc3829889.chain_437	2	STRG.4417.1,STRG.4417.3,blat.proc3829889.chain_436,blat.proc3829889.chain_439	4
scaffold_25	starts_in_intron	6325464	6325464	-	asmbl_34330	none	blat.proc3829901.chain_863	1	STRG.27499.1,STRG.27499.2,STRG.27499.3,blat.proc3829901.chain_861,blat.proc3829901.chain_862,blat.proc3829901.chain_864,blat.proc3829901.chain_865	7
scaffold_12	retained_intron	12005072	12005349	-	asmbl_7977	none	STRG.15099.3,blat.proc3829893.chain_3433	2	STRG.15099.1,STRG.15099.2,Trinity_GG_25403_c0_g1_i3,blat.proc3829893.chain_3432,blat.proc3829893.chain_3434	5
scaffold_6	ends_in_intron	8521001	8521001	+	asmbl_47077	none	blat.proc3829875.chain_86	1	STRG.7725.1,blat.proc3829875.chain_84,blat.proc3829875.chain_85	3
scaffold_6	alt_donor	3385103	3385104	-	asmbl_48200,asmbl_48201,asmbl_48202	none	STRG.7343.1,blat.proc3829889.chain_3336,blat.proc3829889.chain_3337,blat.proc3829889.chain_3339	4	STRG.7343.2,blat.proc3829889.chain_3338	2
scaffold_14	spliced_intron	5451413	5451514	+	asmbl_11990	none	STRG.17005.1,Trinity_GG_9352_c0_g1_i6,blat.proc3829879.chain_1723	3	Trinity_GG_9352_c0_g1_i1,blat.proc3829879.chain_1725	2
scaffold_19	spliced_intron	13102708	13103005	-	asmbl_21813	none	STRG.22619.2,Trinity_GG_29606_c0_g1_i2,blat.proc3829897.chain_3385	3	STRG.22619.1,blat.proc3829897.chain_3384	2
scaffold_2	ends_in_intron	4070328	4070328	-	asmbl_23076	none	Trinity_GG_18017_c0_g1_i1,blat.proc3829887.chain_1659	2	STRG.1852.1,blat.proc3829887.chain_1658	2
scaffold_9	retained_intron	13304979	13305210	-	asmbl_55389	none	STRG.11618.3,Trinity_GG_23412_c0_g1_i1,blat.proc3829891.chain_3713,blat.proc3829891.chain_3714	4	STRG.11618.1,STRG.11618.2,Trinity_GG_23412_c0_g1_i2,blat.proc3829891.chain_3709	4
scaffold_13	alternate_exon	8810329	8810521	-	asmbl_9941	none	STRG.16137.5,blat.proc3829895.chain_936	2	blat.proc3829895.chain_943	1
scaffold_10	skipped_exon	1174340	1176264	+	asmbl_4197	none	STRG.12000.1,blat.proc3829877.chain_711	2	STRG.12000.2,blat.proc3829877.chain_708	2
scaffold_28	retained_intron	5755662	5756003	+	asmbl_38301	none	Trinity_GG_16456_c0_g2_i1,blat.proc3829885.chain_2801	2	STRG.29691.2,Trinity_GG_16456_c0_g1_i2,blat.proc3829885.chain_2800	3
scaffold_21	alternate_exon	730477	730675	+	asmbl_28316	none	STRG.23754.4	1	STRG.23754.1	1
scaffold_3	retained_intron	16072508	16072620	+	asmbl_40566	none	STRG.3888.3,Trinity_GG_2187_c0_g1_i1,blat.proc3829873.chain_288	3	STRG.3888.1,STRG.3888.2,blat.proc3829873.chain_286,blat.proc3829873.chain_287	4
scaffold_12	ends_in_intron	7962902	7962902	+	asmbl_8764	none	Trinity_GG_8164_c0_g1_i3,blat.proc3829877.chain_3278	2	STRG.14845.1,STRG.14845.2,blat.proc3829877.chain_3276,blat.proc3829877.chain_3277	4
scaffold_19	retained_intron	9488173	9488268	-	asmbl_21542	none	blat.proc3829897.chain_3079	1	STRG.22368.1,blat.proc3829897.chain_3080	2
scaffold_14	alt_donor	15999886	15999887	-	asmbl_13749	none	STRG.17826.2	1	STRG.17826.1,blat.proc3829895.chain_2487	2
scaffold_27	alternate_exon	2830935	2831797	+	asmbl_36083	none	Trinity_GG_15915_c0_g1_i3,blat.proc3829885.chain_1825	2	STRG.28748.1,STRG.28748.2,blat.proc3829885.chain_1824,blat.proc3829885.chain_1828	4
scaffold_24	retained_intron	9121693	9121853	+	asmbl_32518,asmbl_32519	none	STRG.26917.2,blat.proc3829885.chain_21,blat.proc3829885.chain_23	3	blat.proc3829885.chain_22	1
scaffold_11	retained_intron	11997492	11997906	-	asmbl_7035	none	STRG.14111.4,Trinity_GG_24898_c1_g1_i1,blat.proc3829893.chain_2517	3	STRG.14111.1,STRG.14111.2,STRG.14111.3,Trinity_GG_24898_c0_g1_i1,Trinity_GG_24898_c0_g1_i3,Trinity_GG_24898_c0_g1_i4,Trinity_GG_24898_c0_g1_i5,blat.proc3829893.chain_2513,blat.proc3829893.chain_2515,blat.proc3829893.chain_2516	10
scaffold_16	alternate_exon	14520884	14520947	-	asmbl_16633	none	STRG.19818.2,blat.proc3829897.chain_757	2	STRG.19818.1	1
scaffold_4	alt_donor	5652053	5652054	-	asmbl_41352,asmbl_41354,asmbl_41357,asmbl_41359,asmbl_41362,asmbl_41363,asmbl_41365,asmbl_41366,asmbl_41368,asmbl_41369	none	STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_605,blat.proc3829889.chain_606,blat.proc3829889.chain_608,blat.proc3829889.chain_611,blat.proc3829889.chain_612,blat.proc3829889.chain_613	10	blat.proc3829889.chain_609	1
scaffold_6	retained_exon	4279832	4279983	-	asmbl_48245	none	STRG.7397.1,Trinity_GG_21148_c0_g1_i3,blat.proc3829889.chain_3380,blat.proc3829889.chain_3382	4	STRG.7397.2	1
scaffold_6	ends_in_intron	12554017	12554017	-	asmbl_48764	none	blat.proc3829891.chain_321	1	STRG.8010.1,STRG.8010.2,STRG.8010.3,blat.proc3829891.chain_318,blat.proc3829891.chain_322	5
scaffold_8	starts_in_intron	116510	116510	-	asmbl_52684	none	blat.proc3829891.chain_1956,blat.proc3829891.chain_3116	2	STRG.9703.1	1
scaffold_19	skipped_exon	9376163	9378679	-	asmbl_21536	none	STRG.22362.1,blat.proc3829897.chain_3074	2	STRG.22362.2	1
scaffold_23	alt_acceptor	10331236	10331237	+	asmbl_31142	none	STRG.26228.3	1	STRG.26228.2	1
scaffold_10	alt_acceptor	762525	762526	-	asmbl_2921,asmbl_2923	none	STRG.11951.1,Trinity_GG_23667_c0_g1_i1,Trinity_GG_23667_c0_g1_i2,blat.proc3829893.chain_409,blat.proc3829893.chain_410	5	STRG.11951.2	1
scaffold_22	starts_in_intron	4416483	4416483	-	asmbl_30028	none	blat.proc3829899.chain_1993	1	STRG.24852.1,blat.proc3829899.chain_1905	2
scaffold_13	retained_exon	405973	406064	-	asmbl_9309,asmbl_9310,asmbl_9315,asmbl_9318	none	STRG.15428.3,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_220,blat.proc3829895.chain_224,blat.proc3829895.chain_233	6	STRG.15428.1,Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i7,blat.proc3829895.chain_221,blat.proc3829895.chain_222,blat.proc3829895.chain_229,blat.proc3829895.chain_230,blat.proc3829895.chain_232	10
scaffold_2	alt_donor	2010732	2010733	+	asmbl_24250	none	STRG.1654.2	1	STRG.1654.1	1
scaffold_1	alternate_exon	974911	975359	-	asmbl_38	none	Trinity_GG_17049_c1_g1_i1,blat.proc3829885.chain_3722	2	STRG.57.1,Trinity_GG_17049_c1_g1_i2,blat.proc3829885.chain_3720,blat.proc3829885.chain_3721	4
scaffold_21	retained_intron	11964407	11964472	-	asmbl_28166	none	Trinity_GG_30782_c0_g1_i1,blat.proc3829899.chain_1757	2	STRG.24636.1	1
scaffold_22	starts_in_intron	7945830	7945830	+	asmbl_29532	none	Trinity_GG_13895_c0_g1_i3,blat.proc3829883.chain_2160	2	STRG.25137.1,blat.proc3829883.chain_2158,blat.proc3829883.chain_2159	3
scaffold_1	retained_intron	5624546	5624630	-	asmbl_285	none	blat.proc3829887.chain_210	1	STRG.350.1,blat.proc3829887.chain_211	2
scaffold_19	alt_acceptor	6743768	6743769	+	asmbl_22243	none	STRG.22181.1,Trinity_GG_12216_c0_g1_i1,blat.proc3829881.chain_3041	3	STRG.22181.2,Trinity_GG_12216_c0_g1_i2,blat.proc3829881.chain_3042	3
scaffold_1	alt_acceptor	20687634	20687635	-	asmbl_1187	none	STRG.1408.1	1	blat.proc3829887.chain_1289	1
scaffold_17	alternate_exon	1289779	1292951	-	asmbl_18724,asmbl_18725,asmbl_18726,asmbl_18727	none	STRG.19952.1,STRG.19952.3,STRG.19952.4,STRG.19952.5,blat.proc3829897.chain_838,blat.proc3829897.chain_840,blat.proc3829897.chain_841,blat.proc3829897.chain_843	8	STRG.19952.2,STRG.19952.6	2
scaffold_1	alternate_exon	2748147	2748315	-	asmbl_124	none	STRG.173.5,Trinity_GG_17107_c0_g1_i3	2	STRG.173.1,STRG.173.4,blat.proc3829887.chain_55	3
scaffold_1	ends_in_intron	7292088	7292088	-	asmbl_438	none	blat.proc3829887.chain_420	1	STRG.527.1,STRG.527.2,blat.proc3829887.chain_421	3
scaffold_7	spliced_intron	2515770	2515883	+	asmbl_50531	none	Trinity_GG_4775_c1_g1_i2	1	Trinity_GG_4775_c1_g1_i1,blat.proc3829875.chain_1110	2
scaffold_24	alt_donor	7637567	7637568	-	asmbl_33032	none	STRG.26784.2	1	STRG.26784.1,blat.proc3829901.chain_90	2
scaffold_1	alternate_exon	22371837	22371914	+	asmbl_2681	none	STRG.1490.6	1	STRG.1490.3,STRG.1490.5	2
scaffold_1	retained_intron	20135302	20135349	-	asmbl_1173	none	STRG.1381.4	1	STRG.1381.5	1
scaffold_14	ends_in_intron	329664	329664	-	asmbl_12803,asmbl_12804	none	Trinity_GG_26365_c0_g1_i1,Trinity_GG_26365_c0_g1_i4,blat.proc3829895.chain_1415,blat.proc3829895.chain_1418	4	STRG.16713.1,STRG.16713.2,STRG.16713.3,Trinity_GG_26365_c0_g1_i2,Trinity_GG_26365_c0_g1_i3,blat.proc3829895.chain_1416,blat.proc3829895.chain_1417	7
scaffold_13	alt_donor	10129403	10129404	+	asmbl_11218	none	blat.proc3829879.chain_934	1	STRG.16228.1,blat.proc3829879.chain_933	2
scaffold_5	alternate_exon	7443169	7443276	-	asmbl_45568	none	STRG.6142.2	1	STRG.6142.1	1
scaffold_27	alt_donor	1109217	1109218	+	asmbl_35958	none	STRG.28591.2	1	STRG.28591.1,Trinity_GG_15836_c0_g1_i1,blat.proc3829885.chain_1650	3
scaffold_7	retained_intron	3954085	3954301	-	asmbl_49648,asmbl_49649,asmbl_49650	none	blat.proc3829891.chain_1091,blat.proc3829891.chain_1092,blat.proc3829891.chain_1093	3	STRG.8791.1,STRG.8791.2,blat.proc3829891.chain_1086,blat.proc3829891.chain_1087,blat.proc3829891.chain_1088,blat.proc3829891.chain_1089,blat.proc3829891.chain_1090	7
scaffold_3	spliced_intron	12627468	12627566	-	asmbl_39171	none	STRG.3653.1,blat.proc3829887.chain_3390	2	STRG.3653.2,blat.proc3829887.chain_3389	2
scaffold_25	spliced_intron	4441939	4442378	+	asmbl_33493	none	STRG.27356.3,Trinity_GG_15095_c0_g1_i1,blat.proc3829885.chain_405	3	STRG.27356.1,STRG.27356.2,Trinity_GG_15095_c0_g1_i3,blat.proc3829885.chain_404	4
scaffold_5	alternate_exon	8764200	8764281	-	asmbl_45621	none	Trinity_GG_20507_c0_g1_i3,blat.proc3829889.chain_2290	2	STRG.6204.1,Trinity_GG_20507_c0_g1_i4,blat.proc3829889.chain_2288	3
scaffold_15	starts_in_intron	5418457	5418457	+	asmbl_14145	none	blat.proc3829879.chain_2846	1	STRG.18212.1	1
scaffold_3	retained_intron	11997571	11997651	+	asmbl_40341	none	Trinity_GG_1992_c0_g1_i1,blat.proc3829871.chain_3698	2	STRG.3619.1	1
scaffold_14	alt_donor	12351231	12351232	+	asmbl_12406,asmbl_12407	none	STRG.17560.1,STRG.17560.2,blat.proc3829879.chain_2238	3	STRG.17560.3,blat.proc3829879.chain_2237	2
scaffold_2	retained_exon	16861119	16861232	+	asmbl_25180	none	STRG.2599.1,blat.proc3829871.chain_2828	2	STRG.2599.3,blat.proc3829871.chain_2829	2
scaffold_21	skipped_exon	402180	403833	-	asmbl_27337	none	STRG.23724.2	1	STRG.23724.1,Trinity_GG_30225_c0_g1_i3,blat.proc3829899.chain_755	3
scaffold_14	spliced_intron	405268	405492	+	asmbl_11722,asmbl_11726,asmbl_11730	none	STRG.16722.3,STRG.16722.5,Trinity_GG_9219_c0_g1_i21,blat.proc3829879.chain_1468,blat.proc3829879.chain_1470	5	STRG.16722.4,STRG.16722.6,STRG.16722.7,Trinity_GG_9219_c0_g1_i17,Trinity_GG_9219_c0_g1_i6,blat.proc3829879.chain_1465,blat.proc3829879.chain_1472	7
scaffold_2	retained_exon	16403416	16403503	+	asmbl_25171	none	STRG.2580.1,blat.proc3829871.chain_2790	2	blat.proc3829871.chain_2793	1
scaffold_19	starts_in_intron	4868012	4868012	+	asmbl_22145	none	Trinity_GG_12181_c0_g1_i1,blat.proc3829881.chain_2974	2	STRG.22053.1,STRG.22053.2,STRG.22053.3,blat.proc3829881.chain_2973	4
scaffold_19	spliced_intron	96182	96339	-	asmbl_21185	none	STRG.21815.2,Trinity_GG_29184_c0_g1_i1,blat.proc3829897.chain_2590	3	Trinity_GG_29184_c0_g1_i3,blat.proc3829897.chain_2591	2
scaffold_14	skipped_exon	15584170	15585636	+	asmbl_12611	none	STRG.17785.3	1	STRG.17785.1,STRG.17785.2	2
scaffold_1	retained_intron	14354987	14355171	-	asmbl_904,asmbl_906,asmbl_907,asmbl_908	none	Trinity_GG_17550_c0_g1_i3,blat.proc3829887.chain_907,blat.proc3829887.chain_908,blat.proc3829887.chain_909,blat.proc3829887.chain_910	5	blat.proc3829887.chain_906	1
scaffold_13	alternate_exon	5185400	5187235	-	asmbl_9637	none	STRG.15805.1,blat.proc3829895.chain_546,blat.proc3829895.chain_550	3	STRG.15805.2,blat.proc3829895.chain_547	2
scaffold_14	alt_acceptor	8093460	8093461	-	asmbl_13230	none	STRG.17212.3,Trinity_GG_26645_c0_g1_i5,blat.proc3829895.chain_1888	3	STRG.17212.2,STRG.17212.4,Trinity_GG_26645_c0_g1_i1,Trinity_GG_26645_c0_g1_i4,blat.proc3829895.chain_1891,blat.proc3829895.chain_1893	6
scaffold_15	alt_acceptor	13982377	13982378	-	asmbl_15712	none	blat.proc3829895.chain_3570	1	STRG.18822.2,Trinity_GG_27579_c0_g1_i2,blat.proc3829895.chain_3571	3
scaffold_13	starts_in_intron	5707027	5707027	-	asmbl_9670,asmbl_9671	none	blat.proc3829895.chain_594,blat.proc3829895.chain_598	2	STRG.15859.1,STRG.15859.2,blat.proc3829895.chain_597,blat.proc3829895.chain_599	4
scaffold_24	alternate_exon	5936455	5955224	+	asmbl_32262	none	STRG.26645.1,Trinity_GG_14738_c1_g1_i1	2	blat.proc3829883.chain_3538	1
scaffold_13	retained_intron	4457659	4457733	+	asmbl_10777,asmbl_10781	none	STRG.15755.3,Trinity_GG_8663_c0_g2_i1,blat.proc3829879.chain_454	3	STRG.15755.1,STRG.15755.2,STRG.15755.4,Trinity_GG_8663_c0_g1_i6,Trinity_GG_8663_c0_g1_i7,Trinity_GG_8663_c0_g2_i2,blat.proc3829879.chain_448,blat.proc3829879.chain_449,blat.proc3829879.chain_451,blat.proc3829879.chain_452,blat.proc3829879.chain_453,blat.proc3829879.chain_455	12
scaffold_12	alternate_exon	1989475	1989538	-	asmbl_7453	none	blat.proc3829893.chain_2863	1	STRG.14473.1,blat.proc3829893.chain_2864,blat.proc3829893.chain_2865	3
scaffold_11	spliced_intron	5501775	5502119	-	asmbl_6640	none	STRG.13608.1,blat.proc3829893.chain_2060	2	STRG.13608.2,blat.proc3829893.chain_2062	2
scaffold_23	retained_exon	8199528	8199703	+	asmbl_31060,asmbl_31064,asmbl_31065	none	STRG.26112.1,STRG.26112.2,blat.proc3829883.chain_2936,blat.proc3829883.chain_2938	4	blat.proc3829883.chain_2937	1
scaffold_11	alt_donor	3697980	3697981	+	asmbl_5417	none	STRG.13477.2	1	STRG.13477.1,blat.proc3829877.chain_1950	2
scaffold_6	retained_intron	12053399	12053576	-	asmbl_48719	none	Trinity_GG_21543_c0_g1_i2,blat.proc3829891.chain_247	2	STRG.7973.1,blat.proc3829891.chain_249	2
scaffold_20	spliced_intron	631183	631334	-	asmbl_26436	none	STRG.22751.1,blat.proc3829897.chain_3522	2	blat.proc3829897.chain_3525	1
scaffold_13	alternate_exon	16368185	16368397	-	asmbl_10269	none	STRG.16680.1,blat.proc3829895.chain_1298	2	STRG.16680.2,blat.proc3829895.chain_1297	2
scaffold_28	ends_in_intron	8499288	8499288	-	asmbl_37802	none	blat.proc3829901.chain_3006	1	STRG.29907.1,blat.proc3829901.chain_3007	2
scaffold_7	alt_acceptor	18400145	18400146	+	asmbl_51410,asmbl_51412	none	STRG.9660.1,STRG.9660.3,blat.proc3829875.chain_2120,blat.proc3829875.chain_2121	4	STRG.9660.2,blat.proc3829875.chain_2122	2
scaffold_5	alt_acceptor	18787659	18787660	+	asmbl_44938	none	STRG.6998.2,Trinity_GG_3846_c0_g1_i2,blat.proc3829873.chain_3144	3	STRG.6998.1,Trinity_GG_3846_c0_g1_i3,blat.proc3829873.chain_3142	3
scaffold_13	skipped_exon	5736319	5737303	-	asmbl_9679	none	STRG.15867.1,blat.proc3829895.chain_640	2	blat.proc3829895.chain_639	1
scaffold_5	alt_acceptor	17216836	17216837	-	asmbl_46171,asmbl_46172,asmbl_46173,asmbl_46175	none	STRG.6885.1,STRG.6885.2,blat.proc3829889.chain_2912,blat.proc3829889.chain_2913,blat.proc3829889.chain_2914	5	blat.proc3829889.chain_2915	1
scaffold_14	ends_in_intron	12628541	12628541	-	asmbl_13565,asmbl_13573	none	STRG.17566.3,blat.proc3829895.chain_2328,blat.proc3829895.chain_2333	3	STRG.17566.1,STRG.17566.2,blat.proc3829895.chain_2326,blat.proc3829895.chain_2327,blat.proc3829895.chain_2329,blat.proc3829895.chain_2330,blat.proc3829895.chain_2331,blat.proc3829895.chain_2332	8
scaffold_1	alt_acceptor	12170028	12170029	+	asmbl_2169,asmbl_2170	none	STRG.845.2,blat.proc3829871.chain_920	2	blat.proc3829871.chain_919	1
scaffold_1	alternate_exon	7114834	7114868	-	asmbl_421	none	STRG.505.2	1	STRG.505.1,blat.proc3829887.chain_403	2
scaffold_15	alt_donor	2564142	2564143	+	asmbl_14004	none	STRG.18036.1,Trinity_GG_9908_c0_g1_i6	2	STRG.18036.3,Trinity_GG_9908_c0_g1_i9	2
scaffold_1	retained_exon	16719150	16719318	-	asmbl_1009,asmbl_1011,asmbl_1012,asmbl_1014	none	STRG.1175.2,STRG.1175.4,STRG.1175.5,STRG.1175.6,blat.proc3829887.chain_1050,blat.proc3829887.chain_1051	6	STRG.1175.3	1
scaffold_2	spliced_intron	899248	899414	+	asmbl_24165,asmbl_24166,asmbl_24167	none	STRG.1568.1,STRG.1568.2,Trinity_GG_900_c0_g1_i4,blat.proc3829871.chain_1642,blat.proc3829871.chain_1644	5	Trinity_GG_900_c0_g1_i3,Trinity_GG_900_c0_g1_i5,blat.proc3829871.chain_1640	3
scaffold_25	retained_intron	4539033	4539139	+	asmbl_33508	none	Trinity_GG_15099_c0_g1_i6,blat.proc3829885.chain_412	2	blat.proc3829885.chain_415	1
scaffold_15	spliced_intron	15857347	15857502	+	asmbl_14773,asmbl_14776,asmbl_14777,asmbl_14780,asmbl_14781	none	STRG.18964.3,STRG.18964.5,STRG.18964.6,Trinity_GG_10383_c0_g1_i3,Trinity_GG_10383_c0_g1_i7,blat.proc3829879.chain_3538,blat.proc3829879.chain_3539,blat.proc3829879.chain_3540,blat.proc3829879.chain_3542,blat.proc3829879.chain_3543	10	Trinity_GG_10383_c0_g1_i2,blat.proc3829879.chain_3541,blat.proc3829879.chain_3545	3
scaffold_19	spliced_intron	11484684	11484870	-	asmbl_21614,asmbl_21615,asmbl_21624	none	STRG.22477.1,STRG.22477.3,blat.proc3829897.chain_3181,blat.proc3829897.chain_3182,blat.proc3829897.chain_3187	5	blat.proc3829897.chain_3184,blat.proc3829897.chain_3192,blat.proc3829897.chain_3193	3
scaffold_1	retained_intron	3493880	3494497	-	asmbl_151,asmbl_152,asmbl_153,asmbl_157	none	blat.proc3829887.chain_118,blat.proc3829887.chain_119,blat.proc3829887.chain_120,blat.proc3829887.chain_121	4	STRG.217.1,STRG.217.2,STRG.217.3,blat.proc3829887.chain_114,blat.proc3829887.chain_116,blat.proc3829887.chain_117,blat.proc3829887.chain_123,blat.proc3829887.chain_124,blat.proc3829887.chain_125	9
scaffold_6	spliced_intron	18013760	18013851	-	asmbl_49155,asmbl_49156	none	STRG.8480.1,blat.proc3829891.chain_779,blat.proc3829891.chain_781	3	blat.proc3829891.chain_780	1
scaffold_6	retained_intron	13168142	13168655	-	asmbl_48823	none	STRG.8067.2,Trinity_GG_21606_c0_g1_i2,blat.proc3829891.chain_380	3	STRG.8067.1,blat.proc3829891.chain_381,blat.proc3829891.chain_383	3
scaffold_26	alt_donor	5523955	5523956	+	asmbl_35541	none	STRG.28244.1	1	STRG.28244.4	1
scaffold_7	alt_donor	4915842	4915843	+	asmbl_50644	none	STRG.8828.2	1	STRG.8828.4	1
scaffold_1	retained_exon	20339722	20339757	+	asmbl_2614	none	blat.proc3829871.chain_1453	1	STRG.1398.4,STRG.1398.5,blat.proc3829871.chain_1449,blat.proc3829871.chain_1452	4
scaffold_2	retained_intron	4788146	4788560	+	asmbl_24405,asmbl_24407	none	STRG.1897.2,STRG.1897.4,blat.proc3829871.chain_1852	3	STRG.1897.3,blat.proc3829871.chain_1851	2
scaffold_19	retained_intron	13155009	13155525	-	asmbl_21824	none	STRG.22626.3	1	STRG.22626.1,blat.proc3829897.chain_3409	2
scaffold_1	skipped_exon	10690372	10690977	-	asmbl_606	none	STRG.697.2,blat.proc3829887.chain_619	2	STRG.697.1,blat.proc3829887.chain_620	2
scaffold_19	retained_intron	12250408	12251336	+	asmbl_22577,asmbl_22578	none	STRG.22543.2,Trinity_GG_12459_c0_g1_i2,blat.proc3829881.chain_3467	3	STRG.22543.1,Trinity_GG_12459_c0_g1_i1,blat.proc3829881.chain_3466	3
scaffold_16	retained_exon	14191268	14191387	-	asmbl_16619,asmbl_16620	none	STRG.19804.2,STRG.19804.3,blat.proc3829897.chain_687,blat.proc3829897.chain_689	4	STRG.19804.1,blat.proc3829897.chain_688	2
scaffold_6	retained_intron	9012696	9012818	+	asmbl_47126,asmbl_47127	none	STRG.7773.2,STRG.7773.3,blat.proc3829875.chain_152	3	STRG.7773.1,blat.proc3829875.chain_153	2
scaffold_10	spliced_intron	3794012	3794169	-	asmbl_3146	none	blat.proc3829893.chain_667	1	Trinity_GG_23826_c0_g1_i1,blat.proc3829893.chain_664	2
scaffold_14	starts_in_intron	4154105	4154105	+	asmbl_11958	none	Trinity_GG_9341_c0_g1_i2	1	STRG.16957.2	1
scaffold_17	ends_in_intron	2355134	2355134	+	asmbl_17772	none	STRG.20017.3	1	STRG.20017.1,STRG.20017.2,STRG.20017.4,STRG.20017.6,blat.proc3829881.chain_852,blat.proc3829881.chain_853	6
scaffold_25	retained_intron	8475238	8475447	+	asmbl_33732	none	Trinity_GG_15254_c0_g1_i3,blat.proc3829885.chain_663	2	STRG.27664.1,blat.proc3829885.chain_661,blat.proc3829885.chain_662	3
scaffold_20	retained_intron	5180909	5180942	+	asmbl_25760	none	STRG.23141.2	1	STRG.23141.1	1
scaffold_18	retained_intron	236302	236439	-	asmbl_19602,asmbl_19603	none	STRG.20966.2,STRG.20966.3,blat.proc3829897.chain_1861	3	STRG.20966.1,blat.proc3829897.chain_1862,blat.proc3829897.chain_1863	3
scaffold_13	starts_in_intron	11582135	11582135	+	asmbl_11269	none	blat.proc3829879.chain_1063	1	STRG.16293.1,STRG.16293.2,STRG.16293.3,blat.proc3829879.chain_1061,blat.proc3829879.chain_1062,blat.proc3829879.chain_1064,blat.proc3829879.chain_1065	7
scaffold_26	alternate_exon	1321803	1321985	-	asmbl_34676,asmbl_34679	none	STRG.27898.2,STRG.27898.3,blat.proc3829901.chain_1144	3	STRG.27898.1,STRG.27898.4,blat.proc3829901.chain_1143	3
scaffold_4	starts_in_intron	4087239	4087239	-	asmbl_41218	none	STRG.4312.1,Trinity_GG_19378_c0_g1_i1,blat.proc3829889.chain_351	3	STRG.4312.2,Trinity_GG_19378_c0_g1_i3,blat.proc3829889.chain_352	3
scaffold_10	spliced_intron	14838682	14838716	-	asmbl_3865	none	STRG.13020.1,blat.proc3829893.chain_1482	2	blat.proc3829893.chain_1483	1
scaffold_21	ends_in_intron	254803	254803	-	asmbl_27322	none	STRG.23718.7	1	STRG.23718.1,STRG.23718.2,blat.proc3829899.chain_793	3
scaffold_22	retained_intron	4220495	4220866	-	asmbl_29988	none	blat.proc3829899.chain_1975	1	STRG.24838.1,STRG.24838.2,STRG.24838.3,STRG.24838.4,blat.proc3829899.chain_1976,blat.proc3829899.chain_1977	6
scaffold_13	skipped_exon	8805240	8806347	-	asmbl_9946	none	blat.proc3829895.chain_944	1	blat.proc3829895.chain_940,blat.proc3829895.chain_941,blat.proc3829895.chain_943	3
scaffold_14	spliced_intron	2374225	2374349	-	asmbl_12916,asmbl_12918,asmbl_12919,asmbl_12920	none	STRG.16839.1,STRG.16839.3,STRG.16839.4,blat.proc3829895.chain_1581	4	STRG.16839.2,STRG.16839.5,STRG.16839.6,blat.proc3829895.chain_1580,blat.proc3829895.chain_1587	5
scaffold_8	retained_intron	1207473	1207512	-	asmbl_52693	none	STRG.9740.2	1	STRG.9740.1	1
scaffold_17	ends_in_intron	2637871	2637871	-	asmbl_18816	none	blat.proc3829897.chain_1004	1	STRG.20045.1,blat.proc3829897.chain_1003	2
scaffold_22	spliced_intron	4368173	4368545	+	asmbl_29290	none	STRG.24840.1,blat.proc3829883.chain_1874	2	STRG.24840.2,Trinity_GG_13731_c0_g1_i1,blat.proc3829883.chain_1873	3
scaffold_8	alternate_exon	3486822	3486891	+	asmbl_51760,asmbl_51761	none	STRG.9839.2,STRG.9839.3	2	STRG.9839.1,blat.proc3829875.chain_2330,blat.proc3829875.chain_2331	3
scaffold_25	spliced_intron	1440381	1440581	+	asmbl_33368	none	STRG.27161.1	1	STRG.27161.3,STRG.27161.4,Trinity_GG_14981_c0_g1_i1,blat.proc3829885.chain_226,blat.proc3829885.chain_227	5
scaffold_8	ends_in_intron	4827274	4827274	-	asmbl_52795	none	Trinity_GG_22558_c3_g1_i1,blat.proc3829891.chain_2099	2	STRG.9938.1,STRG.9938.2,Trinity_GG_22558_c0_g1_i2,blat.proc3829891.chain_2094,blat.proc3829891.chain_2095,blat.proc3829891.chain_2096	6
scaffold_23	retained_exon	4322149	4322192	-	asmbl_31581	none	STRG.25830.2,blat.proc3829899.chain_2961	2	STRG.25830.1,blat.proc3829899.chain_2960	2
scaffold_13	spliced_intron	2653343	2653584	-	asmbl_9425,asmbl_9428	none	STRG.15566.1,blat.proc3829895.chain_303,blat.proc3829895.chain_305	3	blat.proc3829895.chain_304	1
scaffold_2	skipped_exon	7781346	7782118	+	asmbl_24605,asmbl_24608,asmbl_24609,asmbl_24611,asmbl_24613	none	STRG.2076.1,STRG.2076.2,STRG.2076.4,blat.proc3829871.chain_2202,blat.proc3829871.chain_2203,blat.proc3829871.chain_2205,blat.proc3829871.chain_2208,blat.proc3829871.chain_2211,blat.proc3829871.chain_2213	9	blat.proc3829871.chain_2207	1
scaffold_22	alt_acceptor	3001962	3001963	-	asmbl_29927	none	STRG.24772.2	1	STRG.24772.1,blat.proc3829899.chain_1883	2
scaffold_8	alternate_exon	6809445	6809842	-	asmbl_52880	none	STRG.10035.2,blat.proc3829891.chain_2193	2	blat.proc3829891.chain_2194	1
scaffold_1	alternate_exon	15100652	15100759	+	asmbl_2399	none	STRG.1075.1,blat.proc3829871.chain_1147	2	STRG.1075.2,blat.proc3829871.chain_1146	2
scaffold_21	skipped_exon	5519378	5520424	-	asmbl_27687	none	STRG.24069.1,blat.proc3829899.chain_1157	2	blat.proc3829899.chain_1154	1
scaffold_27	retained_intron	3872568	3872679	+	asmbl_36190	none	STRG.28827.3,Trinity_GG_15976_c0_g2_i22,blat.proc3829885.chain_1964	3	STRG.28827.4	1
scaffold_1	ends_in_intron	11121898	11121898	+	asmbl_2055	none	blat.proc3829871.chain_788	1	STRG.730.1,STRG.730.2,blat.proc3829871.chain_787,blat.proc3829871.chain_789	4
scaffold_16	retained_intron	125643	125887	+	asmbl_16786	none	STRG.18995.2,Trinity_GG_10419_c0_g1_i2,blat.proc3829879.chain_3619	3	STRG.18995.1,Trinity_GG_10419_c0_g1_i3,Trinity_GG_10419_c0_g1_i4,blat.proc3829879.chain_3618,blat.proc3829879.chain_3620	5
scaffold_1	alt_acceptor	1908447	1908448	+	asmbl_1514,asmbl_1516	none	STRG.115.1,STRG.115.2,blat.proc3829871.chain_134	3	STRG.115.3,blat.proc3829871.chain_132	2
scaffold_6	retained_intron	13877179	13877346	-	asmbl_48886	none	STRG.8130.1	1	STRG.8130.3,blat.proc3829891.chain_433	2
scaffold_14	starts_in_intron	4116227	4116227	+	asmbl_11947,asmbl_11948,asmbl_11949	none	STRG.16951.3,STRG.16951.4,STRG.16951.5,Trinity_GG_9333_c0_g1_i1,Trinity_GG_9333_c0_g1_i3,Trinity_GG_9333_c0_g1_i4,blat.proc3829879.chain_1686,blat.proc3829879.chain_1688,blat.proc3829879.chain_1690	9	STRG.16951.1,Trinity_GG_9333_c0_g1_i5,blat.proc3829879.chain_1691	3
scaffold_2	retained_intron	14503777	14503884	+	asmbl_24969	none	blat.proc3829871.chain_2621	1	STRG.2451.1,blat.proc3829871.chain_2622	2
scaffold_22	retained_intron	6130130	6130241	+	asmbl_29388,asmbl_29394	none	STRG.24955.6,Trinity_GG_13800_c2_g1_i4,blat.proc3829883.chain_2005,blat.proc3829883.chain_2006	4	STRG.24955.3,STRG.24955.4,blat.proc3829883.chain_2008,blat.proc3829883.chain_2009,blat.proc3829883.chain_2010	5
scaffold_20	ends_in_intron	11940011	11940011	-	asmbl_27128	none	STRG.23682.2,Trinity_GG_30192_c0_g1_i1,blat.proc3829899.chain_679	3	STRG.23682.1,blat.proc3829899.chain_681	2
scaffold_10	spliced_intron	16475794	16476026	-	asmbl_3907	none	STRG.13105.1,blat.proc3829893.chain_1612	2	STRG.13105.2,Trinity_GG_24363_c0_g1_i1,blat.proc3829893.chain_1614	3
scaffold_8	retained_exon	13133094	13133135	-	asmbl_53273	none	blat.proc3829891.chain_2642	1	STRG.10481.1	1
scaffold_6	retained_intron	12999352	12999538	-	asmbl_48801,asmbl_48803	none	STRG.8061.7,Trinity_GG_21547_c0_g1_i11,Trinity_GG_21547_c0_g1_i16,blat.proc3829891.chain_268,blat.proc3829891.chain_270	5	STRG.8061.6,Trinity_GG_21547_c0_g1_i18,Trinity_GG_21547_c0_g1_i2,blat.proc3829891.chain_265,blat.proc3829891.chain_267	5
scaffold_14	alt_acceptor	13582228	13582229	-	asmbl_13628	none	STRG.17623.2,blat.proc3829895.chain_2371	2	STRG.17623.1,blat.proc3829895.chain_2370	2
scaffold_3	alt_acceptor	14519626	14519627	-	asmbl_39335,asmbl_39338	none	STRG.3789.1,Trinity_GG_19119_c0_g1_i2,Trinity_GG_19119_c0_g1_i5,blat.proc3829887.chain_3617,blat.proc3829887.chain_3619	5	Trinity_GG_19119_c0_g1_i1,blat.proc3829887.chain_3616	2
scaffold_18	retained_exon	13268341	13268520	+	asmbl_21025	none	STRG.21757.1,blat.proc3829881.chain_2731	2	STRG.21757.2,blat.proc3829881.chain_2733	2
scaffold_10	ends_in_intron	5395853	5395853	-	asmbl_3277	none	Trinity_GG_23913_c0_g1_i1,blat.proc3829893.chain_820	2	STRG.12357.1,STRG.12357.2	2
scaffold_23	retained_exon	2200248	2200289	-	asmbl_31429	none	STRG.25670.1	1	STRG.25670.2	1
scaffold_13	spliced_intron	2569792	2570318	+	asmbl_10609,asmbl_10610,asmbl_10611,asmbl_10612,asmbl_10613,asmbl_10614	none	STRG.15550.1,Trinity_GG_8519_c0_g1_i1,Trinity_GG_8519_c0_g1_i3,blat.proc3829879.chain_188,blat.proc3829879.chain_189,blat.proc3829879.chain_191,blat.proc3829879.chain_192,blat.proc3829879.chain_193,blat.proc3829879.chain_195	9	Trinity_GG_8519_c0_g1_i8,Trinity_GG_8519_c1_g1_i1,blat.proc3829879.chain_190,blat.proc3829879.chain_194,blat.proc3829879.chain_196	5
scaffold_13	skipped_exon	517905	520155	+	asmbl_10454	none	STRG.15434.3,Trinity_GG_8491_c0_g1_i1,blat.proc3829879.chain_110	3	STRG.15434.2,STRG.15434.4,STRG.15434.5,Trinity_GG_8491_c0_g1_i2,blat.proc3829879.chain_113,blat.proc3829879.chain_115	6
scaffold_12	alt_acceptor	4204910	4204911	+	asmbl_8545	none	STRG.14587.2,Trinity_GG_8068_c0_g1_i1,blat.proc3829877.chain_3110	3	STRG.14587.3	1
scaffold_21	skipped_exon	11670710	11672822	-	asmbl_28162	none	STRG.24616.2,blat.proc3829899.chain_1683	2	STRG.24616.1	1
scaffold_7	alt_donor	8398667	8398668	+	asmbl_50878	none	STRG.9064.1	1	STRG.9064.2	1
scaffold_23	alt_acceptor	7402821	7402822	+	asmbl_30990	none	STRG.26040.1	1	STRG.26040.2,STRG.26040.3	2
scaffold_23	starts_in_intron	1196772	1196772	+	asmbl_30622	none	Trinity_GG_14141_c0_g1_i1,blat.proc3829883.chain_2510	2	STRG.25586.1,blat.proc3829883.chain_2511	2
scaffold_15	ends_in_intron	12033450	12033450	+	asmbl_14459	none	Trinity_GG_10227_c0_g1_i1,blat.proc3829879.chain_3227	2	STRG.18636.1,STRG.18636.2,STRG.18636.3,Trinity_GG_10227_c0_g1_i2,Trinity_GG_10227_c0_g1_i3,Trinity_GG_10227_c0_g1_i4,blat.proc3829879.chain_3225,blat.proc3829879.chain_3226,blat.proc3829879.chain_3228	9
scaffold_13	spliced_intron	13868019	13868068	+	asmbl_11394	none	STRG.16425.2	1	STRG.16425.1,blat.proc3829895.chain_1144	2
scaffold_2	starts_in_intron	3471804	3471804	-	asmbl_23002	none	blat.proc3829887.chain_1611	1	STRG.1781.1	1
scaffold_20	alternate_exon	10784807	10785402	+	asmbl_26148	none	STRG.23592.3	1	blat.proc3829883.chain_742	1
scaffold_15	alt_acceptor	6889478	6889479	-	asmbl_15278,asmbl_15279,asmbl_15280,asmbl_15282,asmbl_15283,asmbl_15285,asmbl_15286,asmbl_15287	none	STRG.18290.1,STRG.18290.2,STRG.18290.5,STRG.18290.6,blat.proc3829895.chain_2933,blat.proc3829895.chain_2934,blat.proc3829895.chain_2936,blat.proc3829895.chain_2937,blat.proc3829895.chain_2939,blat.proc3829895.chain_2942	10	STRG.18290.3,blat.proc3829895.chain_2940	2
scaffold_1	alternate_exon	19038553	19045432	+	asmbl_2566	none	STRG.1337.2	1	STRG.1337.4	1
scaffold_2	retained_intron	6765125	6765361	+	asmbl_24520,asmbl_24521,asmbl_24523,asmbl_24524,asmbl_24525,asmbl_24526	none	Trinity_GG_1102_c0_g1_i10,Trinity_GG_1102_c0_g1_i11,Trinity_GG_1102_c0_g1_i2,Trinity_GG_1102_c0_g1_i4,Trinity_GG_1102_c0_g1_i6,Trinity_GG_1102_c0_g1_i7,blat.proc3829871.chain_2005,blat.proc3829871.chain_2006,blat.proc3829871.chain_2007,blat.proc3829871.chain_2010,blat.proc3829871.chain_2011,blat.proc3829871.chain_2013	12	STRG.2035.1,Trinity_GG_1102_c0_g1_i1,Trinity_GG_1102_c0_g1_i5,blat.proc3829871.chain_2008,blat.proc3829871.chain_2012	5
scaffold_22	starts_in_intron	4571870	4571870	+	asmbl_29308	none	Trinity_GG_13743_c0_g1_i6,blat.proc3829883.chain_1905	2	STRG.24870.1,blat.proc3829883.chain_1908	2
scaffold_1	retained_exon	6830890	6830974	-	asmbl_394	none	STRG.478.2,blat.proc3829887.chain_369	2	STRG.478.3	1
scaffold_9	spliced_intron	16282211	16282310	-	asmbl_55528	none	STRG.11770.2,blat.proc3829893.chain_148	2	STRG.11770.3	1
scaffold_1	alt_acceptor	19386822	19386823	+	asmbl_2582	none	STRG.1348.2	1	STRG.1348.1,blat.proc3829871.chain_1347	2
scaffold_26	alt_donor	9008981	9008982	-	asmbl_35027	none	STRG.28447.1,blat.proc3829901.chain_1589	2	STRG.28447.2	1
scaffold_2	ends_in_intron	885886	885886	+	asmbl_24143	none	blat.proc3829871.chain_1567	1	STRG.1563.2,STRG.1563.3,blat.proc3829871.chain_1566	3
scaffold_10	alternate_exon	211500	211625	-	asmbl_2839,asmbl_2841	none	STRG.11904.2,blat.proc3829893.chain_335,blat.proc3829893.chain_336	3	STRG.11904.1,Trinity_GG_23629_c0_g1_i2,blat.proc3829893.chain_334	3
scaffold_25	alt_acceptor	7735299	7735300	+	asmbl_33671	none	STRG.27579.1,blat.proc3829885.chain_552	2	STRG.27579.2	1
scaffold_19	skipped_exon	11779419	11780572	+	asmbl_22527	none	STRG.22492.1,blat.proc3829881.chain_3449	2	blat.proc3829881.chain_3448	1
scaffold_13	retained_intron	5701364	5701646	-	asmbl_9668	none	STRG.15859.2,Trinity_GG_25916_c0_g1_i7,blat.proc3829895.chain_600	3	STRG.15859.1,blat.proc3829895.chain_597,blat.proc3829895.chain_598	3
scaffold_20	ends_in_intron	3997100	3997100	-	asmbl_26638	none	Trinity_GG_29890_c0_g2_i3,blat.proc3829899.chain_100	2	STRG.23081.1,blat.proc3829899.chain_99	2
scaffold_4	alt_donor	16689690	16689691	+	asmbl_43336	none	STRG.5246.2,Trinity_GG_2914_c0_g1_i1,blat.proc3829873.chain_1536	3	STRG.5246.1	1
scaffold_23	alt_donor	8950224	8950225	-	asmbl_31804	none	STRG.26135.2,blat.proc3829899.chain_3172	2	STRG.26135.1,blat.proc3829899.chain_3171	2
scaffold_18	alt_acceptor	1391633	1391634	-	asmbl_19650	none	STRG.21014.1,blat.proc3829897.chain_1932	2	STRG.21014.2,blat.proc3829897.chain_1933,blat.proc3829897.chain_1935,blat.proc3829897.chain_1937	4
scaffold_12	ends_in_intron	8557645	8557645	+	asmbl_8788	none	blat.proc3829877.chain_3403	1	STRG.14871.1,Trinity_GG_8236_c0_g1_i3,blat.proc3829877.chain_3401,blat.proc3829877.chain_3404	4
scaffold_14	retained_intron	11944578	11944701	+	asmbl_12389	none	Trinity_GG_9639_c0_g1_i3,blat.proc3829879.chain_2225	2	STRG.17520.1,Trinity_GG_9639_c0_g1_i2,blat.proc3829879.chain_2226	3
scaffold_20	retained_intron	1624100	1624144	-	asmbl_26522	none	blat.proc3829897.chain_3655	1	STRG.22888.3	1
scaffold_2	alt_donor	3895423	3895424	-	asmbl_23043	none	STRG.1830.1,blat.proc3829887.chain_1654	2	STRG.1830.2,blat.proc3829887.chain_1653	2
scaffold_22	alternate_exon	6131157	6132201	+	asmbl_29397,asmbl_29398	none	STRG.24955.7,blat.proc3829883.chain_2007	2	STRG.24955.4,blat.proc3829883.chain_2008	2
scaffold_13	spliced_intron	14155681	14155792	+	asmbl_11405	none	blat.proc3829879.chain_1227	1	Trinity_GG_9078_c0_g1_i5,blat.proc3829879.chain_1229	2
scaffold_8	retained_intron	12625487	12625600	-	asmbl_53214,asmbl_53216	none	blat.proc3829891.chain_2558,blat.proc3829891.chain_2560	2	STRG.10429.1,STRG.10429.2,blat.proc3829891.chain_2557,blat.proc3829891.chain_2559	4
scaffold_14	spliced_intron	5790758	5790843	-	asmbl_13074,asmbl_13076	none	STRG.17031.1,blat.proc3829895.chain_1731,blat.proc3829895.chain_1733	3	Trinity_GG_26569_c1_g1_i2,blat.proc3829895.chain_1732	2
scaffold_3	retained_exon	16077959	16078232	-	asmbl_39424	none	STRG.3885.2,blat.proc3829887.chain_3685	2	STRG.3885.4	1
scaffold_8	spliced_intron	5433682	5433756	+	asmbl_51870,asmbl_51871,asmbl_51872	none	STRG.9965.1,STRG.9965.2,blat.proc3829875.chain_2414,blat.proc3829875.chain_2415	4	blat.proc3829875.chain_2416	1
scaffold_5	retained_intron	14125028	14125150	-	asmbl_45969	none	blat.proc3829873.chain_2715	1	STRG.6617.1	1
scaffold_21	alternate_exon	8004586	8004778	+	asmbl_28791	none	STRG.24326.1,blat.proc3829883.chain_1461	2	blat.proc3829883.chain_1463	1
scaffold_4	alt_acceptor	5228399	5228400	-	asmbl_41309,asmbl_41312	none	STRG.4417.1,STRG.4417.3,blat.proc3829889.chain_436,blat.proc3829889.chain_439	4	STRG.4417.2	1
scaffold_17	alt_acceptor	10000186	10000187	+	asmbl_18275	none	STRG.20601.2	1	STRG.20601.1,blat.proc3829881.chain_1435,blat.proc3829881.chain_1436	3
scaffold_27	starts_in_intron	129165	129165	-	asmbl_36591	none	blat.proc3829901.chain_1645	1	STRG.28527.2,STRG.28527.3,blat.proc3829901.chain_1642,blat.proc3829901.chain_1644	4
scaffold_15	retained_intron	15355053	15355143	+	asmbl_14706,asmbl_14707,asmbl_14709	none	STRG.18909.1,Trinity_GG_10368_c0_g1_i4,Trinity_GG_10368_c0_g1_i9,blat.proc3829879.chain_3501,blat.proc3829879.chain_3502,blat.proc3829879.chain_3503	6	STRG.18909.2,blat.proc3829879.chain_3499,blat.proc3829879.chain_3504	3
scaffold_26	starts_in_intron	6372853	6372853	+	asmbl_35604	none	Trinity_GG_15665_c0_g1_i4,blat.proc3829885.chain_1346	2	STRG.28322.1,blat.proc3829885.chain_1343,blat.proc3829885.chain_1344	3
scaffold_4	retained_intron	8746094	8746165	+	asmbl_42908	none	STRG.4689.1	1	blat.proc3829873.chain_1034	1
scaffold_5	starts_in_intron	3854317	3854317	+	asmbl_43913	none	blat.proc3829873.chain_2001	1	STRG.5843.1,blat.proc3829873.chain_2002	2
scaffold_24	retained_exon	10131904	10132036	+	asmbl_32545	none	STRG.26962.1	1	STRG.26962.2,blat.proc3829885.chain_42	2
scaffold_2	ends_in_intron	13093488	13093488	+	asmbl_24850	none	blat.proc3829871.chain_2444	1	STRG.2333.1,blat.proc3829871.chain_2442	2
scaffold_5	retained_intron	8748797	8748963	+	asmbl_44227,asmbl_44230	none	Trinity_GG_3381_c0_g1_i3,blat.proc3829873.chain_2341,blat.proc3829873.chain_2342	3	STRG.6200.1,STRG.6200.2,Trinity_GG_3381_c0_g1_i5,blat.proc3829873.chain_2338,blat.proc3829873.chain_2339,blat.proc3829873.chain_2340	6
scaffold_17	alternate_exon	8336947	8340232	+	asmbl_18111	none	STRG.20445.1	1	STRG.20445.2	1
scaffold_4	ends_in_intron	12690202	12690202	-	asmbl_41695,asmbl_41696	none	blat.proc3829889.chain_920,blat.proc3829889.chain_922	2	blat.proc3829889.chain_919	1
scaffold_5	ends_in_intron	17250191	17250191	+	asmbl_44817	none	Trinity_GG_3771_c0_g1_i2,blat.proc3829873.chain_3002	2	STRG.6890.1,Trinity_GG_3771_c0_g1_i1,blat.proc3829873.chain_3003	3
scaffold_8	retained_intron	3615695	3615920	+	asmbl_51773	none	STRG.9854.1,blat.proc3829875.chain_2278	2	STRG.9854.3	1
scaffold_9	retained_exon	6149058	6149127	+	asmbl_54065	none	STRG.11144.2	1	STRG.11144.1	1
scaffold_18	alt_acceptor	7547044	7547045	-	asmbl_19992,asmbl_19993	none	STRG.21448.2,STRG.21448.3	2	STRG.21448.1,blat.proc3829897.chain_2296,blat.proc3829897.chain_2297	3
scaffold_13	starts_in_intron	13111487	13111487	+	asmbl_11346	none	Trinity_GG_9006_c1_g1_i1,blat.proc3829879.chain_1130	2	STRG.16371.1,Trinity_GG_9006_c0_g1_i1,blat.proc3829879.chain_1129	3
scaffold_3	spliced_intron	17364750	17364900	-	asmbl_39496,asmbl_39503	none	STRG.3972.4,blat.proc3829889.chain_24	2	blat.proc3829889.chain_22,blat.proc3829889.chain_27	2
scaffold_12	retained_intron	16402135	16403321	+	asmbl_9131,asmbl_9132,asmbl_9134,asmbl_9135	none	STRG.15385.1,STRG.15385.2,STRG.15385.3,STRG.15385.6,Trinity_GG_8419_c0_g1_i1,Trinity_GG_8419_c0_g1_i3,Trinity_GG_8419_c0_g1_i5,blat.proc3829877.chain_3733,blat.proc3829877.chain_3734,blat.proc3829877.chain_3737	10	STRG.15385.4,blat.proc3829877.chain_3732	2
scaffold_5	alt_donor	16018648	16018649	-	asmbl_46121	none	blat.proc3829889.chain_2848	1	STRG.6778.2,Trinity_GG_20823_c0_g1_i4,blat.proc3829889.chain_2846	3
scaffold_14	retained_intron	2374225	2374349	-	asmbl_12913,asmbl_12917,asmbl_12921,asmbl_12922,asmbl_12923	none	STRG.16839.2,STRG.16839.5,STRG.16839.6,blat.proc3829895.chain_1580,blat.proc3829895.chain_1587	5	STRG.16839.1,STRG.16839.3,STRG.16839.4,blat.proc3829895.chain_1581	4
scaffold_3	alternate_exon	6183393	6184098	-	asmbl_38866	none	STRG.3262.3	1	STRG.3262.1,blat.proc3829887.chain_3017	2
scaffold_9	retained_exon	8395320	8395534	+	asmbl_54161	none	STRG.11249.3	1	STRG.11249.5,blat.proc3829877.chain_20	2
scaffold_15	alt_donor	13055955	13055956	-	asmbl_15627	none	STRG.18738.1,blat.proc3829895.chain_3467	2	STRG.18738.2,blat.proc3829895.chain_3469	2
scaffold_21	alt_donor	6544901	6544902	-	asmbl_27755	none	STRG.24168.1,blat.proc3829899.chain_1244	2	STRG.24168.2	1
scaffold_15	starts_in_intron	2563697	2563697	+	asmbl_14008,asmbl_14009	none	STRG.18036.4,Trinity_GG_9908_c0_g1_i9	2	STRG.18036.1,STRG.18036.3	2
scaffold_15	alt_donor	14663241	14663242	+	asmbl_14642,asmbl_14644	none	STRG.18874.1,STRG.18874.3,Trinity_GG_10354_c0_g1_i4,blat.proc3829879.chain_3459	4	STRG.18874.2	1
scaffold_5	alternate_exon	3591749	3591944	-	asmbl_45313	none	STRG.5822.1	1	STRG.5822.2,STRG.5822.3,STRG.5822.4,blat.proc3829889.chain_1927,blat.proc3829889.chain_1928	5
scaffold_24	alternate_exon	5950117	5950307	+	asmbl_32282	none	blat.proc3829883.chain_3548	1	STRG.26645.1,blat.proc3829883.chain_3537,blat.proc3829883.chain_3541,blat.proc3829883.chain_3543,blat.proc3829883.chain_3545	5
scaffold_6	alt_acceptor	7516493	7516494	-	asmbl_48432,asmbl_48437	none	STRG.7647.3,blat.proc3829889.chain_3683	2	STRG.7647.1,STRG.7647.4,blat.proc3829889.chain_3680,blat.proc3829889.chain_3684	4
scaffold_17	alternate_exon	683578	683916	-	asmbl_18685,asmbl_18687	none	STRG.19908.1,blat.proc3829897.chain_875,blat.proc3829897.chain_876	3	STRG.19908.2,STRG.19908.3,blat.proc3829897.chain_873	3
scaffold_24	alt_donor	2466431	2466432	-	asmbl_32780,asmbl_32781	none	STRG.26455.3,blat.proc3829899.chain_3525	2	STRG.26455.1,STRG.26455.2,blat.proc3829899.chain_3524	3
scaffold_18	retained_intron	7943320	7944087	-	asmbl_20023	none	STRG.21483.1,Trinity_GG_29025_c0_g1_i2,blat.proc3829897.chain_2325	3	STRG.21483.2	1
scaffold_7	alternate_exon	8614589	8614798	+	asmbl_50915	none	STRG.9089.2,blat.proc3829875.chain_1501	2	STRG.9089.1,blat.proc3829875.chain_1503	2
scaffold_15	spliced_intron	4494181	4494312	+	asmbl_14083,asmbl_14084,asmbl_14086,asmbl_14089	none	STRG.18165.1,blat.proc3829879.chain_2746,blat.proc3829879.chain_2747,blat.proc3829879.chain_2748,blat.proc3829879.chain_2750	5	STRG.18165.2,blat.proc3829879.chain_2749	2
scaffold_7	alt_donor	12449541	12449542	-	asmbl_50040,asmbl_50043,asmbl_50047	none	STRG.9342.3,STRG.9342.4,blat.proc3829891.chain_1605	3	blat.proc3829891.chain_1604	1
scaffold_28	alternate_exon	1393158	1393204	-	asmbl_37307	none	STRG.29312.2	1	STRG.29312.1,Trinity_GG_33399_c0_g1_i1	2
scaffold_5	alt_acceptor	1082466	1082467	-	asmbl_45211	none	STRG.5654.2	1	STRG.5654.1,Trinity_GG_20208_c0_g1_i3,blat.proc3829889.chain_1767	3
scaffold_15	spliced_intron	4964468	4964665	+	asmbl_14118,asmbl_14120,asmbl_14121,asmbl_14126	none	STRG.18193.1,Trinity_GG_9948_c0_g1_i1,Trinity_GG_9948_c0_g1_i3,blat.proc3829879.chain_2760,blat.proc3829879.chain_2761,blat.proc3829879.chain_2762,blat.proc3829879.chain_2764	7	STRG.18193.4	1
scaffold_4	alt_donor	2202839	2202840	-	asmbl_41135,asmbl_41136	none	STRG.4215.2,blat.proc3829889.chain_328	2	STRG.4215.1,blat.proc3829889.chain_329	2
scaffold_12	retained_intron	12287220	12287724	-	asmbl_7985,asmbl_7987,asmbl_7989,asmbl_7990,asmbl_7991	none	STRG.15114.3,STRG.15114.4,STRG.15114.5,STRG.15114.6,Trinity_GG_25420_c0_g1_i2,blat.proc3829893.chain_3461	6	STRG.15114.1,STRG.15114.2	2
scaffold_23	starts_in_intron	6857970	6857970	-	asmbl_31702,asmbl_31708	none	STRG.26000.1,blat.proc3829899.chain_3087,blat.proc3829899.chain_3088	3	STRG.26000.2,STRG.26000.3	2
scaffold_21	spliced_intron	7010245	7010833	-	asmbl_27800	none	STRG.24222.1,blat.proc3829899.chain_1273	2	STRG.24222.2,blat.proc3829899.chain_1275	2
scaffold_18	retained_intron	11328359	11328484	+	asmbl_20962	none	Trinity_GG_11992_c0_g1_i5,blat.proc3829881.chain_2654	2	STRG.21666.1,STRG.21666.2,blat.proc3829881.chain_2648,blat.proc3829881.chain_2651	4
scaffold_27	retained_intron	6708854	6709006	+	asmbl_36360	none	STRG.29026.4	1	STRG.29026.1,STRG.29026.2,STRG.29026.3	3
scaffold_6	alt_acceptor	13357491	13357492	-	asmbl_48843	none	STRG.8087.1,blat.proc3829891.chain_340,blat.proc3829891.chain_341	3	STRG.8087.2,blat.proc3829891.chain_338	2
scaffold_12	skipped_exon	10532534	10534377	+	asmbl_8891	none	STRG.15006.2,Trinity_GG_8266_c0_g1_i1,blat.proc3829877.chain_3468	3	STRG.15006.1,Trinity_GG_8266_c0_g1_i2,blat.proc3829877.chain_3466	3
scaffold_2	retained_intron	13397328	13397546	+	asmbl_24873,asmbl_24876,asmbl_24877	none	STRG.2357.1,Trinity_GG_1292_c0_g1_i3,blat.proc3829871.chain_2405,blat.proc3829871.chain_2406,blat.proc3829871.chain_2408	5	STRG.2357.2,STRG.2357.3,blat.proc3829871.chain_2407,blat.proc3829871.chain_2410	4
scaffold_22	spliced_intron	6127007	6127298	+	asmbl_29389,asmbl_29390,asmbl_29391,asmbl_29392	none	STRG.24955.3,STRG.24955.4,STRG.24955.5,blat.proc3829883.chain_1996,blat.proc3829883.chain_1997,blat.proc3829883.chain_1998,blat.proc3829883.chain_2002	7	blat.proc3829883.chain_1999	1
scaffold_19	spliced_intron	12491455	12492152	+	asmbl_22619,asmbl_22622	none	STRG.22568.1,blat.proc3829881.chain_3536	2	STRG.22568.3,blat.proc3829881.chain_3534	2
scaffold_20	retained_intron	1469616	1469860	-	asmbl_26503,asmbl_26507,asmbl_26509	none	STRG.22854.2,blat.proc3829897.chain_3656,blat.proc3829897.chain_3660,blat.proc3829897.chain_3661	4	STRG.22854.3,blat.proc3829897.chain_3658,blat.proc3829897.chain_3659	3
scaffold_17	ends_in_intron	12364938	12364938	+	asmbl_18406	none	STRG.20775.2,blat.proc3829881.chain_1562	2	STRG.20775.1,blat.proc3829881.chain_1560,blat.proc3829881.chain_1561	3
scaffold_24	starts_in_intron	10482434	10482434	+	asmbl_32565	none	STRG.26999.4,blat.proc3829885.chain_112	2	STRG.26999.2	1
scaffold_3	ends_in_intron	14432362	14432362	-	asmbl_39321	none	Trinity_GG_19066_c0_g1_i1,blat.proc3829887.chain_3509	2	STRG.3781.1,STRG.3781.2,STRG.3781.3,Trinity_GG_19066_c0_g1_i3,Trinity_GG_19066_c0_g1_i4,blat.proc3829887.chain_3506,blat.proc3829887.chain_3507	7
scaffold_21	starts_in_intron	2398896	2398896	+	asmbl_28400	none	Trinity_GG_13188_c0_g1_i3,Trinity_GG_13188_c0_g1_i4,blat.proc3829883.chain_951	3	STRG.23846.1,blat.proc3829883.chain_953	2
scaffold_19	starts_in_intron	11485159	11485159	-	asmbl_21617	none	blat.proc3829897.chain_3194	1	STRG.22477.1,STRG.22477.3,blat.proc3829897.chain_3181,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184,blat.proc3829897.chain_3187,blat.proc3829897.chain_3192,blat.proc3829897.chain_3193	8
scaffold_13	alt_acceptor	8955243	8955244	+	asmbl_11151	none	blat.proc3829879.chain_861	1	STRG.16151.2,STRG.16151.3,blat.proc3829879.chain_864	3
scaffold_9	starts_in_intron	9864442	9864442	-	asmbl_55206	none	STRG.11345.2,blat.proc3829891.chain_3525	2	STRG.11345.1,STRG.11345.3,Trinity_GG_23302_c0_g1_i4,blat.proc3829891.chain_3522	4
scaffold_23	alt_acceptor	5156922	5156923	-	asmbl_31606	none	STRG.25874.1	1	STRG.25874.2,Trinity_GG_31476_c0_g1_i1,blat.proc3829899.chain_2975	3
scaffold_18	alternate_exon	2834126	2834261	+	asmbl_20450	none	STRG.21133.4,blat.proc3829881.chain_1914	2	STRG.21133.1,STRG.21133.2,blat.proc3829881.chain_1915,blat.proc3829881.chain_1923	4
scaffold_11	alt_donor	35528	35529	-	asmbl_6342	none	STRG.13223.2	1	blat.proc3829893.chain_1684	1
scaffold_23	alternate_exon	10976189	10977015	+	asmbl_31184	none	STRG.26281.3,Trinity_GG_14524_c1_g1_i2,blat.proc3829883.chain_3204	3	STRG.26281.2	1
scaffold_24	ends_in_intron	6832154	6832154	+	asmbl_32355	none	STRG.26717.3,blat.proc3829883.chain_3658	2	STRG.26717.1,STRG.26717.2,STRG.26717.4,blat.proc3829883.chain_3657,blat.proc3829883.chain_3660,blat.proc3829883.chain_3661,blat.proc3829883.chain_3662	7
scaffold_3	retained_exon	5929029	5929153	-	asmbl_38826,asmbl_38827,asmbl_38829	none	STRG.3248.1,blat.proc3829887.chain_2990,blat.proc3829887.chain_2992,blat.proc3829887.chain_2993	4	blat.proc3829887.chain_2991	1
scaffold_17	retained_exon	2355867	2356400	+	asmbl_17766,asmbl_17767,asmbl_17770	none	STRG.20017.4,STRG.20017.5,STRG.20017.6	3	STRG.20017.1,blat.proc3829881.chain_852,blat.proc3829881.chain_853	3
scaffold_4	spliced_intron	19524379	19524448	-	asmbl_42196,asmbl_42198	none	STRG.5535.1,blat.proc3829889.chain_1550,blat.proc3829889.chain_1553	3	blat.proc3829889.chain_1551	1
scaffold_1	alternate_exon	13717144	13718914	-	asmbl_844	none	STRG.985.1,Trinity_GG_17531_c2_g1_i1,Trinity_GG_17539_c0_g1_i1,blat.proc3829887.chain_875,blat.proc3829887.chain_876,blat.proc3829887.chain_889	6	STRG.985.2,blat.proc3829887.chain_874	2
scaffold_5	alternate_exon	16260236	16261289	+	asmbl_44727	none	STRG.6806.1,Trinity_GG_3662_c0_g1_i2,blat.proc3829873.chain_2822	3	STRG.6806.2,Trinity_GG_3662_c0_g1_i1,blat.proc3829873.chain_2823	3
scaffold_3	spliced_intron	7708801	7708889	-	asmbl_38927,asmbl_38928,asmbl_38929,asmbl_38930,asmbl_38932,asmbl_38933	none	STRG.3361.1,STRG.3361.2,blat.proc3829887.chain_3171,blat.proc3829887.chain_3172,blat.proc3829887.chain_3174,blat.proc3829887.chain_3175,blat.proc3829887.chain_3177	7	blat.proc3829887.chain_3173,blat.proc3829887.chain_3176	2
scaffold_14	alt_donor	7300259	7300260	+	asmbl_12132	none	blat.proc3829879.chain_1827	1	STRG.17156.1	1
scaffold_8	starts_in_intron	16506374	16506374	-	asmbl_53411,asmbl_53413,asmbl_53414,asmbl_53416	none	Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2863,blat.proc3829891.chain_2868,blat.proc3829891.chain_2870	6	STRG.10621.1,STRG.10621.3,STRG.10621.4,STRG.10621.5,blat.proc3829891.chain_2859,blat.proc3829891.chain_2860,blat.proc3829891.chain_2862,blat.proc3829891.chain_2864,blat.proc3829891.chain_2865,blat.proc3829891.chain_2867,blat.proc3829891.chain_2869,blat.proc3829891.chain_2871	12
scaffold_7	spliced_intron	13889999	13890106	+	asmbl_51264	none	STRG.9476.1,Trinity_GG_5267_c0_g1_i1,blat.proc3829875.chain_1942	3	STRG.9476.2,STRG.9476.3	2
scaffold_5	alt_acceptor	4696508	4696509	+	asmbl_43950	none	STRG.5917.3	1	STRG.5917.2,STRG.5917.4,blat.proc3829873.chain_2093,blat.proc3829873.chain_2094	4
scaffold_12	spliced_intron	4784262	4784513	-	asmbl_7581,asmbl_7582,asmbl_7583,asmbl_7585,asmbl_7586,asmbl_7587,asmbl_7588,asmbl_7589	none	STRG.14646.1,STRG.14646.2,STRG.14646.4,STRG.14646.5,blat.proc3829893.chain_3017,blat.proc3829893.chain_3018,blat.proc3829893.chain_3019,blat.proc3829893.chain_3021,blat.proc3829893.chain_3022,blat.proc3829893.chain_3023,blat.proc3829893.chain_3025	11	STRG.14646.3,Trinity_GG_25172_c0_g1_i11,blat.proc3829893.chain_3024	3
scaffold_9	alt_acceptor	16712635	16712636	-	asmbl_55580	none	STRG.11809.2	1	STRG.11809.1,Trinity_GG_23547_c0_g1_i1,blat.proc3829893.chain_197	3
scaffold_20	retained_exon	9969246	9969260	+	asmbl_26072	none	STRG.23527.2,blat.proc3829883.chain_596	2	STRG.23527.1,Trinity_GG_12980_c0_g1_i2,blat.proc3829883.chain_597	3
scaffold_8	alt_acceptor	17666939	17666940	-	asmbl_53489	none	STRG.10675.2	1	STRG.10675.1,blat.proc3829891.chain_2837	2
scaffold_22	alternate_exon	4568613	4568702	+	asmbl_29314,asmbl_29315	none	STRG.24870.2,blat.proc3829883.chain_1903,blat.proc3829883.chain_1904	3	STRG.24870.1,blat.proc3829883.chain_1908	2
scaffold_27	skipped_exon	1728475	1730643	-	asmbl_36734	none	STRG.28641.2,blat.proc3829901.chain_1840	2	STRG.28641.1,blat.proc3829901.chain_1841	2
scaffold_10	alt_donor	2765191	2765192	-	asmbl_3039,asmbl_3040	none	STRG.12086.2,STRG.12086.3,blat.proc3829893.chain_542,blat.proc3829893.chain_544	4	STRG.12086.1,blat.proc3829893.chain_541,blat.proc3829893.chain_543	3
scaffold_20	alternate_exon	9946243	9946346	+	asmbl_26068	none	STRG.23522.2,blat.proc3829883.chain_634	2	STRG.23522.1,blat.proc3829883.chain_635	2
scaffold_10	retained_intron	7684958	7685179	+	asmbl_4578	none	STRG.12548.4,blat.proc3829877.chain_1171	2	STRG.12548.2,blat.proc3829877.chain_1167	2
scaffold_11	alt_donor	11594045	11594046	+	asmbl_5942	none	Trinity_GG_7776_c0_g1_i1,blat.proc3829877.chain_2590	2	STRG.14075.1,Trinity_GG_7776_c0_g1_i2,blat.proc3829877.chain_2591	3
scaffold_5	alt_acceptor	14261867	14261868	+	asmbl_44583	none	STRG.6629.3,blat.proc3829873.chain_2762,blat.proc3829873.chain_2771	3	STRG.6629.1,STRG.6629.2,blat.proc3829873.chain_2764,blat.proc3829873.chain_2767	4
scaffold_8	retained_intron	17815077	17815250	+	asmbl_52502,asmbl_52504	none	blat.proc3829875.chain_3119,blat.proc3829875.chain_3124	2	STRG.10687.4,blat.proc3829875.chain_3125	2
scaffold_23	retained_exon	7279357	7279426	-	asmbl_31740	none	STRG.26034.1,blat.proc3829899.chain_3127	2	STRG.26034.3	1
scaffold_28	alternate_exon	1159759	1159862	-	asmbl_37300	none	STRG.29303.1	1	STRG.29303.2,blat.proc3829901.chain_2411	2
scaffold_9	alt_donor	13313246	13313247	-	asmbl_55398	none	STRG.11621.1,Trinity_GG_23425_c0_g1_i2,blat.proc3829891.chain_3743,blat.proc3829891.chain_3744	4	STRG.11621.2	1
scaffold_26	spliced_intron	7900294	7900429	+	asmbl_35680,asmbl_35681	none	STRG.28392.2,blat.proc3829885.chain_1418	2	STRG.28392.1,blat.proc3829885.chain_1420	2
scaffold_4	skipped_exon	16882986	16884087	-	asmbl_41984	none	STRG.5276.2	1	STRG.5276.1,Trinity_GG_19953_c0_g1_i1,blat.proc3829889.chain_1320	3
scaffold_3	alt_acceptor	5664143	5664144	+	asmbl_40032	none	STRG.3224.1,blat.proc3829871.chain_3409	2	STRG.3224.3,blat.proc3829871.chain_3410	2
scaffold_8	alternate_exon	11109547	11109591	-	asmbl_53129,asmbl_53130	none	STRG.10313.2,STRG.10313.3,blat.proc3829891.chain_2471,blat.proc3829891.chain_2472	4	STRG.10313.1	1
scaffold_27	ends_in_intron	3541723	3541723	+	asmbl_36172	none	blat.proc3829885.chain_1899	1	STRG.28804.1	1
scaffold_13	alt_acceptor	1238488	1238489	+	asmbl_10520	none	STRG.15478.7	1	STRG.15478.1,STRG.15478.2,STRG.15478.4,STRG.15478.5,STRG.15478.6,Trinity_GG_8526_c0_g2_i3,blat.proc3829879.chain_204,blat.proc3829879.chain_205,blat.proc3829879.chain_207,blat.proc3829879.chain_208	10
scaffold_11	ends_in_intron	8425627	8425627	+	asmbl_5737	none	Trinity_GG_7631_c0_g1_i1,blat.proc3829877.chain_2326	2	STRG.13849.1,STRG.13849.2,Trinity_GG_7631_c0_g1_i2,Trinity_GG_7631_c0_g1_i3,blat.proc3829877.chain_2325,blat.proc3829877.chain_2327	6
scaffold_8	starts_in_intron	10489813	10489813	-	asmbl_53103	none	blat.proc3829891.chain_2412	1	STRG.10281.1,blat.proc3829891.chain_2410,blat.proc3829891.chain_2411	3
scaffold_18	alt_acceptor	7512066	7512067	-	asmbl_19986	none	STRG.21441.2	1	STRG.21441.1,blat.proc3829897.chain_2212	2
scaffold_1	alt_donor	6279703	6279704	-	asmbl_350	none	STRG.425.3	1	STRG.425.1,STRG.425.2,STRG.425.4,STRG.425.5,Trinity_GG_17251_c1_g1_i1,blat.proc3829887.chain_336	6
scaffold_23	ends_in_intron	10977015	10977015	+	asmbl_31184	none	blat.proc3829883.chain_3204	1	STRG.26281.1,Trinity_GG_14524_c0_g1_i13,Trinity_GG_14524_c0_g1_i8,blat.proc3829883.chain_3193,blat.proc3829883.chain_3194,blat.proc3829883.chain_3195,blat.proc3829883.chain_3199,blat.proc3829883.chain_3200,blat.proc3829883.chain_3203	9
scaffold_19	starts_in_intron	12670818	12670818	+	asmbl_22627	none	Trinity_GG_12491_c0_g1_i3,blat.proc3829881.chain_3544	2	STRG.22573.1,Trinity_GG_12491_c0_g1_i1,blat.proc3829881.chain_3545,blat.proc3829881.chain_3546	4
scaffold_6	ends_in_intron	7496043	7496043	+	asmbl_47010	none	STRG.7644.1,blat.proc3829873.chain_3735	2	STRG.7644.2	1
scaffold_18	spliced_intron	13150111	13150230	-	asmbl_20195	none	STRG.21746.1	1	STRG.21746.2	1
scaffold_12	retained_intron	2984860	2985625	-	asmbl_7476	none	Trinity_GG_25109_c0_g1_i1,blat.proc3829893.chain_2903	2	STRG.14524.1,STRG.14524.2,blat.proc3829893.chain_2904	3
scaffold_19	retained_intron	13173213	13173287	+	asmbl_22675,asmbl_22676	none	blat.proc3829881.chain_3528,blat.proc3829881.chain_3529	2	STRG.22628.1,blat.proc3829881.chain_3526	2
scaffold_25	ends_in_intron	3612281	3612281	-	asmbl_34126	none	blat.proc3829901.chain_601	1	STRG.27287.1,STRG.27287.2,blat.proc3829901.chain_602	3
scaffold_23	starts_in_intron	10008810	10008810	+	asmbl_31115	none	Trinity_GG_14470_c0_g1_i2,blat.proc3829883.chain_3092	2	STRG.26182.1	1
scaffold_28	retained_exon	3117420	3117491	-	asmbl_37457	none	STRG.29495.1,blat.proc3829901.chain_2613	2	STRG.29495.2	1
scaffold_1	alt_donor	7441511	7441512	-	asmbl_446	none	STRG.520.1,blat.proc3829887.chain_409	2	STRG.520.2	1
scaffold_10	spliced_intron	13002218	13002487	+	asmbl_4844	none	STRG.12901.1,blat.proc3829877.chain_1478	2	STRG.12901.3,blat.proc3829877.chain_1477	2
scaffold_6	alternate_exon	10822363	10822684	-	asmbl_48646	none	STRG.7888.2,blat.proc3829891.chain_168	2	STRG.7888.1,blat.proc3829891.chain_167	2
scaffold_13	ends_in_intron	3052	3052	+	asmbl_10417	none	blat.proc3829879.chain_73	1	STRG.15408.1,STRG.15408.2,Trinity_GG_8474_c0_g1_i2,Trinity_GG_8474_c0_g1_i6,blat.proc3829879.chain_71,blat.proc3829879.chain_76	6
scaffold_25	starts_in_intron	9449037	9449037	+	asmbl_33808	none	STRG.27744.2,blat.proc3829885.chain_731	2	STRG.27744.1,blat.proc3829885.chain_732,blat.proc3829885.chain_734	3
scaffold_27	ends_in_intron	4758072	4758072	+	asmbl_36273	none	blat.proc3829885.chain_2044	1	STRG.28893.1	1
scaffold_23	starts_in_intron	5733472	5733472	+	asmbl_30891	none	Trinity_GG_14300_c1_g1_i1,blat.proc3829883.chain_2793	2	STRG.25924.1,STRG.25924.2,Trinity_GG_14300_c0_g1_i1,Trinity_GG_14300_c0_g1_i3,blat.proc3829883.chain_2790,blat.proc3829883.chain_2791	6
scaffold_20	alt_donor	8760834	8760835	-	asmbl_26932,asmbl_26934	none	STRG.23410.1,blat.proc3829899.chain_461,blat.proc3829899.chain_462	3	STRG.23410.2	1
scaffold_9	skipped_exon	5655421	5656306	+	asmbl_54044	none	STRG.11123.1,blat.proc3829875.chain_3621	2	STRG.11123.2	1
scaffold_1	spliced_intron	13030601	13030736	+	asmbl_2280	none	STRG.934.1	1	Trinity_GG_573_c0_g1_i2,blat.proc3829871.chain_1013	2
scaffold_23	starts_in_intron	3606635	3606635	+	asmbl_30757	none	blat.proc3829883.chain_2592	1	STRG.25764.1,blat.proc3829883.chain_2593	2
scaffold_18	retained_exon	12609437	12609570	-	asmbl_20186	none	STRG.21714.1	1	STRG.21714.2,blat.proc3829897.chain_2527	2
scaffold_6	spliced_intron	19076966	19077208	+	asmbl_47814,asmbl_47816	none	STRG.8572.2,STRG.8572.3,Trinity_GG_4663_c0_g1_i3,blat.proc3829875.chain_866	4	Trinity_GG_4663_c0_g1_i6,blat.proc3829875.chain_868	2
scaffold_6	retained_intron	797115	797273	-	asmbl_48013	none	STRG.7133.3	1	STRG.7133.1,STRG.7133.2,blat.proc3829889.chain_3126	3
scaffold_9	retained_intron	11842900	11843151	-	asmbl_55293,asmbl_55296,asmbl_55297,asmbl_55298	none	blat.proc3829891.chain_3619,blat.proc3829891.chain_3620,blat.proc3829891.chain_3622,blat.proc3829891.chain_3623,blat.proc3829891.chain_3626	5	STRG.11491.1	1
scaffold_1	retained_intron	4567214	4567837	-	asmbl_205,asmbl_209	none	STRG.277.3,Trinity_GG_17147_c0_g1_i8,blat.proc3829887.chain_139	3	STRG.277.4,blat.proc3829887.chain_133,blat.proc3829887.chain_138	3
scaffold_9	alt_donor	15991483	15991484	-	asmbl_55526	none	STRG.11763.2	1	STRG.11763.1,blat.proc3829893.chain_141	2
scaffold_11	retained_intron	9174309	9174475	+	asmbl_5837	none	STRG.13939.1,Trinity_GG_7696_c0_g1_i1,blat.proc3829877.chain_2452	3	STRG.13939.2,Trinity_GG_7696_c0_g1_i2,blat.proc3829877.chain_2451	3
scaffold_1	retained_intron	9163929	9164016	-	asmbl_522,asmbl_524	none	blat.proc3829887.chain_524,blat.proc3829887.chain_528	2	STRG.610.1,blat.proc3829887.chain_526	2
scaffold_15	spliced_intron	12597437	12597600	-	asmbl_15603,asmbl_15604,asmbl_15608	none	STRG.18702.1,Trinity_GG_27520_c0_g1_i3,Trinity_GG_27520_c0_g1_i5,blat.proc3829895.chain_3478,blat.proc3829895.chain_3479,blat.proc3829895.chain_3481	6	Trinity_GG_27520_c0_g1_i4,Trinity_GG_27520_c0_g1_i7,blat.proc3829895.chain_3476,blat.proc3829895.chain_3482	4
scaffold_11	skipped_exon	6613828	6615052	-	asmbl_6704	none	STRG.13692.2,blat.proc3829893.chain_2144	2	STRG.13692.1,blat.proc3829893.chain_2145	2
scaffold_24	alternate_exon	4454034	4454151	+	asmbl_32214	none	STRG.26585.1	1	STRG.26585.2,blat.proc3829883.chain_3421	2
scaffold_4	alt_acceptor	19018020	19018021	-	asmbl_42147	none	STRG.5483.4	1	STRG.5483.3	1
scaffold_7	retained_intron	1034813	1034848	+	asmbl_50455	none	Trinity_GG_4730_c0_g1_i1	1	STRG.8611.1	1
scaffold_14	starts_in_intron	584321	584321	+	asmbl_11744	none	Trinity_GG_9217_c1_g1_i1,blat.proc3829879.chain_1460	2	STRG.16728.3	1
scaffold_27	retained_exon	616619	616723	+	asmbl_35923	none	STRG.28561.2,blat.proc3829885.chain_1611	2	STRG.28561.1	1
scaffold_22	alt_acceptor	7437508	7437509	-	asmbl_30166	none	STRG.25066.3,blat.proc3829899.chain_2155	2	STRG.25066.1,STRG.25066.2,STRG.25066.4,STRG.25066.5,blat.proc3829899.chain_2152,blat.proc3829899.chain_2153,blat.proc3829899.chain_2154	7
scaffold_8	alt_acceptor	9126055	9126056	-	asmbl_53003,asmbl_53004,asmbl_53005,asmbl_53008	none	STRG.10161.1,STRG.10161.2,STRG.10161.3,blat.proc3829891.chain_2336	4	STRG.10161.4,blat.proc3829891.chain_2335	2
scaffold_3	skipped_exon	3734522	3736476	+	asmbl_39927	none	STRG.3096.2,blat.proc3829871.chain_3245	2	STRG.3096.1,blat.proc3829871.chain_3246	2
scaffold_12	alternate_exon	1972283	1973560	-	asmbl_7445	none	STRG.14475.1,blat.proc3829893.chain_2858	2	STRG.14475.2	1
scaffold_7	alt_donor	13575743	13575744	+	asmbl_51246	none	STRG.9451.2,Trinity_GG_5241_c0_g1_i2,blat.proc3829875.chain_1895	3	STRG.9451.1,Trinity_GG_5241_c0_g1_i1,blat.proc3829875.chain_1896	3
scaffold_15	alt_donor	12000402	12000403	-	asmbl_15563,asmbl_15564	none	STRG.18630.1,STRG.18630.3,Trinity_GG_27487_c0_g1_i1,Trinity_GG_27487_c0_g1_i3,blat.proc3829895.chain_3415,blat.proc3829895.chain_3418	6	STRG.18630.2,Trinity_GG_27487_c0_g1_i7,blat.proc3829895.chain_3420	3
scaffold_1	starts_in_intron	4387144	4387144	-	asmbl_189	none	Trinity_GG_17151_c0_g1_i3,blat.proc3829887.chain_148	2	STRG.266.1,STRG.266.2,blat.proc3829887.chain_146	3
scaffold_2	alt_donor	4624725	4624726	+	asmbl_24393	none	blat.proc3829871.chain_1901	1	STRG.1886.1	1
scaffold_21	starts_in_intron	4971372	4971372	+	asmbl_28567	none	Trinity_GG_13318_c1_g1_i1,blat.proc3829883.chain_1183	2	STRG.24026.1,STRG.24026.2,blat.proc3829883.chain_1182	3
scaffold_12	spliced_intron	14944862	14945190	-	asmbl_8146,asmbl_8147	none	STRG.15269.1,STRG.15269.2,Trinity_GG_25558_c0_g1_i1,Trinity_GG_25558_c0_g1_i2,blat.proc3829893.chain_3715,blat.proc3829893.chain_3716	6	Trinity_GG_25558_c0_g1_i3,blat.proc3829893.chain_3717	2
scaffold_6	ends_in_intron	12636360	12636360	+	asmbl_47362,asmbl_47363	none	STRG.8015.1,STRG.8015.3	2	STRG.8015.2,Trinity_GG_4352_c0_g1_i3,blat.proc3829875.chain_333,blat.proc3829875.chain_334	4
scaffold_12	retained_intron	12802383	12802469	+	asmbl_8986	none	STRG.15161.2,Trinity_GG_8330_c0_g2_i1,blat.proc3829877.chain_3581	3	STRG.15161.1,blat.proc3829877.chain_3578,blat.proc3829877.chain_3579,blat.proc3829877.chain_3580	4
scaffold_15	retained_intron	12422505	12422732	+	asmbl_14504,asmbl_14507	none	blat.proc3829879.chain_3268,blat.proc3829879.chain_3273	2	STRG.18687.1,blat.proc3829879.chain_3270,blat.proc3829879.chain_3271,blat.proc3829879.chain_3272	4
scaffold_6	alternate_exon	12999182	12999351	-	asmbl_48799,asmbl_48800,asmbl_48802	none	STRG.8061.6,STRG.8061.8,Trinity_GG_21547_c0_g1_i18,Trinity_GG_21547_c0_g1_i2,Trinity_GG_21547_c0_g1_i7,blat.proc3829891.chain_265,blat.proc3829891.chain_267,blat.proc3829891.chain_269	8	STRG.8061.1,STRG.8061.2,STRG.8061.3,STRG.8061.4,STRG.8061.5,Trinity_GG_21547_c0_g1_i10,blat.proc3829891.chain_259,blat.proc3829891.chain_260,blat.proc3829891.chain_262,blat.proc3829891.chain_263,blat.proc3829891.chain_264,blat.proc3829891.chain_271,blat.proc3829891.chain_272,blat.proc3829891.chain_273,blat.proc3829891.chain_275	15
scaffold_2	starts_in_intron	6900534	6900534	+	asmbl_24535	none	Trinity_GG_1103_c0_g2_i1,blat.proc3829871.chain_2023	2	STRG.2036.1,STRG.2036.3,STRG.2036.4,STRG.2036.5,blat.proc3829871.chain_2016,blat.proc3829871.chain_2018,blat.proc3829871.chain_2019	7
scaffold_2	alternate_exon	10909380	10909513	-	asmbl_23454	none	STRG.2249.2,blat.proc3829887.chain_2166	2	STRG.2249.1,blat.proc3829887.chain_2167	2
scaffold_2	retained_intron	899777	899876	+	asmbl_24166	none	Trinity_GG_900_c0_g1_i4,blat.proc3829871.chain_1642	2	STRG.1568.1,STRG.1568.2,blat.proc3829871.chain_1644	3
scaffold_23	spliced_intron	10909931	10909952	-	asmbl_31884	none	STRG.26273.1	1	STRG.26273.2,STRG.26273.3,Trinity_GG_31671_c0_g1_i1,Trinity_GG_31671_c0_g1_i2,blat.proc3829899.chain_3308	5
scaffold_13	alt_acceptor	13570457	13570458	+	asmbl_11379	none	blat.proc3829879.chain_1120	1	STRG.16402.1	1
scaffold_22	retained_intron	11345296	11345475	-	asmbl_30438	none	STRG.25451.1	1	blat.proc3829899.chain_2555	1
scaffold_20	spliced_intron	7468719	7468963	-	asmbl_26825,asmbl_26829,asmbl_26831	none	STRG.23308.1,blat.proc3829899.chain_394,blat.proc3829899.chain_399,blat.proc3829899.chain_401	4	blat.proc3829899.chain_389,blat.proc3829899.chain_391,blat.proc3829899.chain_396	3
scaffold_14	ends_in_intron	15514080	15514080	+	asmbl_12599	none	blat.proc3829879.chain_2448	1	STRG.17769.1,Trinity_GG_9772_c0_g1_i1,blat.proc3829879.chain_2447	3
scaffold_18	starts_in_intron	2318006	2318006	-	asmbl_19757	none	blat.proc3829897.chain_2028	1	STRG.21113.1	1
scaffold_23	retained_intron	6632892	6633001	+	asmbl_30936	none	blat.proc3829883.chain_2812	1	STRG.25985.1,STRG.25985.2,blat.proc3829883.chain_2811,blat.proc3829883.chain_2813,blat.proc3829883.chain_2814,blat.proc3829883.chain_2815,blat.proc3829883.chain_2816,blat.proc3829883.chain_2817	8
scaffold_17	retained_exon	12221530	12222989	-	asmbl_19367	none	STRG.20749.1,blat.proc3829897.chain_1685	2	STRG.20749.2	1
scaffold_18	ends_in_intron	6323533	6323533	+	asmbl_20704	none	blat.proc3829881.chain_2316	1	STRG.21356.1,Trinity_GG_11789_c0_g1_i2,blat.proc3829881.chain_2315	3
scaffold_25	starts_in_intron	4328986	4328986	-	asmbl_34161	none	Trinity_GG_32331_c0_g1_i1,blat.proc3829901.chain_659	2	STRG.27346.1,Trinity_GG_32331_c0_g1_i2,blat.proc3829901.chain_658	3
scaffold_7	retained_intron	13952403	13952512	+	asmbl_51270	none	Trinity_GG_5270_c0_g1_i5,blat.proc3829875.chain_1946	2	STRG.9478.1,Trinity_GG_5270_c0_g1_i2,blat.proc3829875.chain_1947	3
scaffold_298	ends_in_intron	543	543	-	asmbl_38614	none	Trinity_GG_33970_c0_g1_i5,blat.proc3829901.chain_3309	2	STRG.30237.1,STRG.30237.2	2
scaffold_4	alternate_exon	17115305	17115405	+	asmbl_43375	none	STRG.5308.4	1	STRG.5308.1,STRG.5308.3,Trinity_GG_2943_c0_g1_i1,blat.proc3829873.chain_1585,blat.proc3829873.chain_1588	5
scaffold_2	spliced_intron	14503777	14503884	+	asmbl_24968	none	STRG.2451.1,blat.proc3829871.chain_2622	2	blat.proc3829871.chain_2621	1
scaffold_5	spliced_intron	9086493	9086579	+	asmbl_44261,asmbl_44267,asmbl_44270	none	STRG.6237.2,STRG.6237.3,Trinity_GG_3425_c0_g1_i4,blat.proc3829873.chain_2425	4	Trinity_GG_3425_c0_g1_i2,blat.proc3829873.chain_2420	2
scaffold_6	ends_in_intron	11114554	11114554	-	asmbl_48675,asmbl_48676	none	STRG.7918.3,Trinity_GG_21518_c0_g1_i1,Trinity_GG_21518_c0_g1_i4,blat.proc3829891.chain_213,blat.proc3829891.chain_215	5	STRG.7918.1,STRG.7918.2	2
scaffold_1	ends_in_intron	7532224	7532224	+	asmbl_1898	none	blat.proc3829871.chain_548	1	STRG.523.1,blat.proc3829871.chain_547	2
scaffold_20	ends_in_intron	11516823	11516823	+	asmbl_26224	none	Trinity_GG_13042_c0_g1_i2,blat.proc3829883.chain_688	2	STRG.23643.1	1
scaffold_3	spliced_intron	14763888	14764213	-	asmbl_39364,asmbl_39365,asmbl_39367	none	STRG.3818.2,STRG.3818.3,Trinity_GG_19114_c0_g1_i1,blat.proc3829887.chain_3600	4	STRG.3818.4,Trinity_GG_19114_c0_g1_i2,Trinity_GG_19114_c0_g1_i3,blat.proc3829887.chain_3599,blat.proc3829887.chain_3601	5
scaffold_14	retained_intron	176800	176929	-	asmbl_12769	none	STRG.16696.2	1	STRG.16696.1,blat.proc3829895.chain_1362,blat.proc3829895.chain_1364	3
scaffold_3	skipped_exon	5951042	5951658	-	asmbl_38836,asmbl_38837	none	STRG.3255.5,STRG.3255.7,blat.proc3829887.chain_3047	3	STRG.3255.1,STRG.3255.2,blat.proc3829887.chain_3044,blat.proc3829887.chain_3045	4
scaffold_1	spliced_intron	14427728	14428466	-	asmbl_930	none	STRG.1042.1,blat.proc3829887.chain_964	2	STRG.1042.2,blat.proc3829887.chain_961	2
scaffold_6	retained_intron	3564649	3564671	-	asmbl_48214	none	STRG.7359.1,Trinity_GG_21139_c0_g1_i1	2	STRG.7359.2	1
scaffold_13	spliced_intron	6619004	6619115	-	asmbl_9766	none	STRG.15949.2,Trinity_GG_25988_c0_g1_i3,blat.proc3829895.chain_728	3	Trinity_GG_25988_c0_g1_i2,blat.proc3829895.chain_727	2
scaffold_12	spliced_intron	6421547	6421719	-	asmbl_7665,asmbl_7666,asmbl_7668,asmbl_7669	none	STRG.14731.1,STRG.14731.2,STRG.14731.3,STRG.14731.4,blat.proc3829893.chain_3149,blat.proc3829893.chain_3151	6	blat.proc3829893.chain_3150	1
scaffold_6	alternate_exon	17646697	17647288	-	asmbl_49128	none	STRG.8448.3,Trinity_GG_21817_c0_g1_i1,blat.proc3829891.chain_745	3	STRG.8448.2	1
scaffold_28	spliced_intron	6926103	6926670	-	asmbl_37692	none	STRG.29744.3,blat.proc3829901.chain_2887	2	STRG.29744.1,Trinity_GG_33697_c0_g1_i1,blat.proc3829901.chain_2888	3
scaffold_26	retained_intron	6660908	6661271	+	asmbl_35624	none	blat.proc3829885.chain_1287	1	STRG.28361.1,blat.proc3829885.chain_1288,blat.proc3829885.chain_1289,blat.proc3829885.chain_1290	4
scaffold_16	alternate_exon	6094643	6107971	-	asmbl_16310	none	blat.proc3829897.chain_379	1	blat.proc3829897.chain_381	1
scaffold_15	spliced_intron	2990755	2990835	-	asmbl_15078	none	STRG.18069.2,blat.proc3829895.chain_2806	2	STRG.18069.3,blat.proc3829895.chain_2807	2
scaffold_8	alt_acceptor	4873929	4873930	+	asmbl_51856,asmbl_51858	none	STRG.9943.1,STRG.9943.2,blat.proc3829875.chain_2422,blat.proc3829875.chain_2423	4	STRG.9943.5,Trinity_GG_5525_c0_g1_i4,blat.proc3829875.chain_2424,blat.proc3829875.chain_2425	4
scaffold_2	spliced_intron	14559023	14559185	+	asmbl_24982,asmbl_24986,asmbl_24987,asmbl_24989	none	STRG.2454.1,STRG.2454.2,STRG.2454.3,STRG.2454.4	4	blat.proc3829871.chain_2570	1
scaffold_8	alt_donor	14569488	14569489	+	asmbl_52377	none	STRG.10535.2	1	blat.proc3829875.chain_3057	1
scaffold_15	alt_acceptor	6087179	6087180	+	asmbl_14178	none	STRG.18260.2	1	STRG.18260.1,blat.proc3829879.chain_2900	2
scaffold_22	alternate_exon	4361579	4362977	+	asmbl_29287	none	STRG.24839.2	1	Trinity_GG_13729_c1_g1_i2,blat.proc3829883.chain_1870	2
scaffold_6	retained_exon	886410	886474	-	asmbl_48033	none	STRG.7153.2	1	STRG.7153.1	1
scaffold_17	alternate_exon	10038928	10039411	-	asmbl_19277	none	STRG.20608.1	1	STRG.20608.3	1
scaffold_13	retained_intron	7965217	7965352	-	asmbl_9883	none	STRG.16060.2	1	STRG.16060.1,blat.proc3829895.chain_761	2
scaffold_18	alt_donor	6809685	6809686	+	asmbl_20715	none	STRG.21383.1,blat.proc3829881.chain_2346	2	STRG.21383.2,blat.proc3829881.chain_2345	2
scaffold_13	retained_intron	8951830	8951935	-	asmbl_9961	none	blat.proc3829895.chain_932	1	STRG.16152.1,blat.proc3829895.chain_931,blat.proc3829895.chain_933	3
scaffold_19	ends_in_intron	6405020	6405020	+	asmbl_22211	none	Trinity_GG_12228_c0_g1_i3,blat.proc3829881.chain_3068	2	STRG.22156.1,Trinity_GG_12228_c0_g1_i1,blat.proc3829881.chain_3070	3
scaffold_2	spliced_intron	13330421	13330492	+	asmbl_24862,asmbl_24866	none	STRG.2342.3,STRG.2342.5,blat.proc3829871.chain_2473	3	STRG.2342.1,STRG.2342.2,blat.proc3829871.chain_2471,blat.proc3829871.chain_2472	4
scaffold_9	ends_in_intron	6989140	6989140	+	asmbl_54106	none	blat.proc3829875.chain_3699	1	STRG.11201.1,blat.proc3829875.chain_3700	2
scaffold_7	spliced_intron	129101	129361	-	asmbl_49478	none	STRG.8585.4	1	STRG.8585.1,STRG.8585.8,blat.proc3829891.chain_992,blat.proc3829891.chain_998	4
scaffold_5	spliced_intron	5608890	5608962	+	asmbl_44018,asmbl_44019	none	STRG.5977.2,blat.proc3829873.chain_2067	2	STRG.5977.3,blat.proc3829873.chain_2065	2
scaffold_12	alt_acceptor	13396701	13396702	-	asmbl_8074	none	STRG.15208.3	1	STRG.15208.2,blat.proc3829893.chain_3625,blat.proc3829893.chain_3626	3
scaffold_6	alt_donor	3253841	3253842	+	asmbl_46768	none	STRG.7320.2,Trinity_GG_3979_c0_g1_i2	2	STRG.7320.1,Trinity_GG_3979_c0_g1_i1	2
scaffold_24	alternate_exon	10480715	10482257	+	asmbl_32564,asmbl_32567,asmbl_32569	none	STRG.26999.1,STRG.26999.3,blat.proc3829885.chain_114,blat.proc3829885.chain_115	4	STRG.26999.2	1
scaffold_12	starts_in_intron	13392764	13392764	-	asmbl_8071,asmbl_8078	none	STRG.15208.1,blat.proc3829893.chain_3547	2	STRG.15208.2,STRG.15208.3,blat.proc3829893.chain_3545,blat.proc3829893.chain_3546	4
scaffold_18	alternate_exon	7507807	7507887	-	asmbl_19980	none	STRG.21434.1	1	STRG.21434.2	1
scaffold_24	spliced_intron	8737517	8737605	-	asmbl_33085,asmbl_33087,asmbl_33088	none	STRG.26873.1,blat.proc3829901.chain_170,blat.proc3829901.chain_171,blat.proc3829901.chain_172	4	STRG.26873.2,blat.proc3829901.chain_169	2
scaffold_2237	spliced_intron	774	866	+	asmbl_30569	none	STRG.30705.2	1	STRG.30705.1	1
scaffold_3	retained_intron	14495657	14495730	-	asmbl_39326	none	STRG.3788.1	1	blat.proc3829887.chain_3591	1
scaffold_7	retained_intron	8659757	8660031	-	asmbl_49838	none	blat.proc3829891.chain_1357	1	STRG.9091.1	1
scaffold_16	alt_acceptor	3742284	3742285	-	asmbl_16169	none	STRG.19165.1,blat.proc3829897.chain_208	2	STRG.19165.2	1
scaffold_11	retained_exon	8103025	8103388	+	asmbl_5694,asmbl_5696,asmbl_5697	none	STRG.13811.1,STRG.13811.3,blat.proc3829877.chain_2300,blat.proc3829877.chain_2303	4	STRG.13811.4	1
scaffold_5	starts_in_intron	10198041	10198041	-	asmbl_45706	none	blat.proc3829889.chain_2393	1	blat.proc3829889.chain_2388	1
scaffold_9	alternate_exon	11853140	11853374	-	asmbl_55302	none	STRG.11492.2,blat.proc3829891.chain_3609	2	STRG.11492.1,blat.proc3829891.chain_3611	2
scaffold_16	alternate_exon	3869031	3869471	-	asmbl_16180	none	STRG.19184.3	1	STRG.19184.1,STRG.19184.2,blat.proc3829897.chain_216,blat.proc3829897.chain_217	4
scaffold_11	ends_in_intron	222862	222862	+	asmbl_5238	none	STRG.13248.1	1	blat.proc3829877.chain_1755	1
scaffold_18	spliced_intron	1499817	1499941	+	asmbl_20379	none	STRG.21023.1,Trinity_GG_11574_c0_g1_i2,blat.proc3829881.chain_1905	3	Trinity_GG_11574_c0_g1_i3,blat.proc3829881.chain_1906,blat.proc3829881.chain_1907	3
scaffold_4	retained_intron	19274897	19275126	-	asmbl_42170,asmbl_42171	none	blat.proc3829889.chain_1528,blat.proc3829889.chain_1529	2	STRG.5507.1	1
scaffold_16	ends_in_intron	6196732	6196732	+	asmbl_17087,asmbl_17088	none	STRG.19373.3,STRG.19373.4	2	STRG.19373.1,STRG.19373.2,blat.proc3829881.chain_125,blat.proc3829881.chain_126,blat.proc3829881.chain_127,blat.proc3829881.chain_128,blat.proc3829881.chain_129,blat.proc3829881.chain_130,blat.proc3829881.chain_131	9
scaffold_10	alt_donor	11970172	11970173	+	asmbl_4782,asmbl_4790,asmbl_4791,asmbl_4792,asmbl_4794	none	STRG.12831.1,blat.proc3829877.chain_1313,blat.proc3829877.chain_1317,blat.proc3829877.chain_1319,blat.proc3829877.chain_1321,blat.proc3829877.chain_1322	6	STRG.12831.3	1
scaffold_2	starts_in_intron	3898545	3898545	+	asmbl_24340,asmbl_24342	none	blat.proc3829871.chain_1840,blat.proc3829871.chain_1843	2	STRG.1831.2,blat.proc3829871.chain_1842	2
scaffold_22	spliced_intron	11473745	11473840	+	asmbl_29676	none	STRG.25469.1,Trinity_GG_14065_c0_g1_i3,blat.proc3829883.chain_2406	3	blat.proc3829883.chain_2405	1
scaffold_7	alt_donor	15270953	15270954	+	asmbl_51316,asmbl_51319	none	STRG.9532.1,blat.proc3829875.chain_1982	2	STRG.9532.2,STRG.9532.4,blat.proc3829875.chain_1984,blat.proc3829875.chain_1985,blat.proc3829875.chain_1987	5
scaffold_5	alternate_exon	16292216	16295772	+	asmbl_44738,asmbl_44741	none	STRG.6811.3,blat.proc3829873.chain_2945	2	Trinity_GG_3725_c0_g1_i3,blat.proc3829873.chain_2944	2
scaffold_7	skipped_exon	12447826	12449542	-	asmbl_50040,asmbl_50043,asmbl_50047	none	STRG.9342.3,STRG.9342.4,blat.proc3829891.chain_1605	3	STRG.9342.1,STRG.9342.2,Trinity_GG_22282_c1_g1_i12,Trinity_GG_22282_c1_g1_i7,blat.proc3829891.chain_1607,blat.proc3829891.chain_1608,blat.proc3829891.chain_1610,blat.proc3829891.chain_1611	8
scaffold_28	spliced_intron	2729367	2729694	-	asmbl_37403	none	STRG.29439.1,blat.proc3829901.chain_2554	2	blat.proc3829901.chain_2555	1
scaffold_19	alt_acceptor	8230531	8230532	+	asmbl_22306	none	STRG.22263.2	1	STRG.22263.1,Trinity_GG_12275_c0_g1_i1,blat.proc3829881.chain_3143	3
scaffold_1	spliced_intron	10414454	10414950	-	asmbl_596	none	STRG.680.3	1	Trinity_GG_17393_c0_g2_i1,blat.proc3829887.chain_610	2
scaffold_22	retained_intron	1626257	1626515	-	asmbl_29907	none	STRG.24737.1,blat.proc3829899.chain_1860	2	STRG.24737.2,blat.proc3829899.chain_1861	2
scaffold_16	spliced_intron	3564452	3564605	-	asmbl_16154	none	STRG.19157.2,blat.proc3829897.chain_189	2	STRG.19157.1,blat.proc3829897.chain_187,blat.proc3829897.chain_188	3
scaffold_18	alternate_exon	7866282	7867030	-	asmbl_20018	none	STRG.21476.1,blat.proc3829897.chain_2331	2	blat.proc3829897.chain_2329	1
scaffold_24	spliced_intron	9121693	9121853	+	asmbl_32520	none	blat.proc3829885.chain_22	1	STRG.26917.2,blat.proc3829885.chain_21,blat.proc3829885.chain_23	3
scaffold_19	spliced_intron	11485415	11485915	-	asmbl_21614,asmbl_21615,asmbl_21619,asmbl_21621,asmbl_21623,asmbl_21624	none	STRG.22477.1,STRG.22477.3,blat.proc3829897.chain_3181,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184,blat.proc3829897.chain_3187,blat.proc3829897.chain_3192,blat.proc3829897.chain_3193	8	blat.proc3829897.chain_3190	1
scaffold_25	alt_donor	9551896	9551897	+	asmbl_33819,asmbl_33820	none	STRG.27755.1,blat.proc3829885.chain_777,blat.proc3829885.chain_779	3	STRG.27755.3	1
scaffold_18	spliced_intron	8912486	8913423	-	asmbl_20080,asmbl_20085	none	STRG.21550.3,blat.proc3829897.chain_2398	2	STRG.21550.4,STRG.21550.6,blat.proc3829897.chain_2394,blat.proc3829897.chain_2395	4
scaffold_4	skipped_exon	4922110	4923378	+	asmbl_42650	none	STRG.4392.3	1	STRG.4392.1,STRG.4392.2,blat.proc3829873.chain_706,blat.proc3829873.chain_707	4
scaffold_7	alt_acceptor	7615903	7615904	-	asmbl_49766,asmbl_49767	none	STRG.9004.2,STRG.9004.4	2	STRG.9004.1,STRG.9004.3,Trinity_GG_22076_c0_g1_i1,Trinity_GG_22076_c0_g1_i2,blat.proc3829891.chain_1229,blat.proc3829891.chain_1230	6
scaffold_16	retained_intron	672773	672865	+	asmbl_16819,asmbl_16822	none	STRG.19032.2,STRG.19032.3,Trinity_GG_10438_c0_g1_i2,Trinity_GG_10438_c0_g1_i3,blat.proc3829879.chain_3650,blat.proc3829879.chain_3654	6	STRG.19032.1,STRG.19032.4,Trinity_GG_10438_c0_g1_i7,blat.proc3829879.chain_3651,blat.proc3829879.chain_3652,blat.proc3829879.chain_3653	6
scaffold_18	alternate_exon	8883474	8883675	-	asmbl_20069,asmbl_20070	none	STRG.21540.3,STRG.21540.4,Trinity_GG_29008_c0_g1_i3,Trinity_GG_29008_c0_g1_i4,blat.proc3829897.chain_2285,blat.proc3829897.chain_2286	6	STRG.21540.1,blat.proc3829897.chain_2287,blat.proc3829897.chain_2288	3
scaffold_17	spliced_intron	14546294	14546320	+	asmbl_18529	none	STRG.20918.3,blat.proc3829881.chain_1763	2	STRG.20918.2,Trinity_GG_11505_c0_g1_i1,Trinity_GG_11505_c0_g1_i2,blat.proc3829881.chain_1765	4
scaffold_24	alternate_exon	5950912	5955224	+	asmbl_32262	none	STRG.26645.1,Trinity_GG_14738_c1_g1_i1	2	blat.proc3829883.chain_3548	1
scaffold_5	skipped_exon	14262861	14263469	+	asmbl_44588	none	STRG.6629.2,blat.proc3829873.chain_2767	2	STRG.6629.1,STRG.6629.3,blat.proc3829873.chain_2764,blat.proc3829873.chain_2769,blat.proc3829873.chain_2771	5
scaffold_12	spliced_intron	14988995	14989423	-	asmbl_8155,asmbl_8156,asmbl_8157,asmbl_8158,asmbl_8159	none	STRG.15282.1,STRG.15282.2,STRG.15282.3,STRG.15282.4,Trinity_GG_25571_c0_g1_i1,Trinity_GG_25571_c0_g1_i3,Trinity_GG_25571_c0_g1_i4,Trinity_GG_25571_c0_g1_i5,blat.proc3829893.chain_3740,blat.proc3829893.chain_3741,blat.proc3829893.chain_3742,blat.proc3829893.chain_3744	12	Trinity_GG_25571_c1_g1_i1,blat.proc3829893.chain_3745	2
scaffold_13	alt_acceptor	3913617	3913618	+	asmbl_10729	none	STRG.15703.1,blat.proc3829879.chain_422	2	STRG.15703.2	1
scaffold_15	alternate_exon	15184893	15185177	+	asmbl_14678	none	STRG.18906.4	1	STRG.18906.2,blat.proc3829879.chain_3471,blat.proc3829879.chain_3472,blat.proc3829879.chain_3473,blat.proc3829879.chain_3480,blat.proc3829879.chain_3484	6
scaffold_14	alt_donor	6368162	6368163	+	asmbl_12052	none	STRG.17069.2,blat.proc3829879.chain_1816	2	STRG.17069.1,Trinity_GG_9405_c0_g1_i3,blat.proc3829879.chain_1817,blat.proc3829879.chain_1818	4
scaffold_18	spliced_intron	4071656	4072114	-	asmbl_19827	none	STRG.21193.2	1	STRG.21193.1,Trinity_GG_28890_c0_g1_i3,blat.proc3829897.chain_2094,blat.proc3829897.chain_2095	4
scaffold_23	retained_intron	10978895	10979242	+	asmbl_31187,asmbl_31189,asmbl_31195	none	Trinity_GG_14524_c0_g1_i12,Trinity_GG_14524_c0_g1_i8,blat.proc3829883.chain_3193,blat.proc3829883.chain_3197,blat.proc3829883.chain_3200	5	STRG.26281.1,STRG.26281.2,Trinity_GG_14524_c0_g1_i13,Trinity_GG_14524_c0_g1_i9,blat.proc3829883.chain_3192,blat.proc3829883.chain_3194,blat.proc3829883.chain_3195,blat.proc3829883.chain_3199,blat.proc3829883.chain_3201,blat.proc3829883.chain_3203	10
scaffold_14	alt_acceptor	1132372	1132373	-	asmbl_12841	none	STRG.16759.2,Trinity_GG_26404_c0_g1_i2,blat.proc3829895.chain_1476	3	STRG.16759.1,Trinity_GG_26404_c0_g1_i3,blat.proc3829895.chain_1475	3
scaffold_19	starts_in_intron	12200178	12200178	-	asmbl_21679	none	Trinity_GG_29490_c0_g1_i1,blat.proc3829897.chain_3109	2	STRG.22536.1,STRG.22536.2,Trinity_GG_29490_c0_g1_i2	3
scaffold_10	ends_in_intron	8985122	8985122	-	asmbl_3560	none	Trinity_GG_24057_c0_g1_i3,blat.proc3829893.chain_1103	2	STRG.12638.1,blat.proc3829893.chain_1105	2
scaffold_6	ends_in_intron	6954342	6954342	+	asmbl_46968,asmbl_46969	none	STRG.7599.2,blat.proc3829873.chain_3713	2	STRG.7599.1,blat.proc3829873.chain_3712	2
scaffold_19	starts_in_intron	5343170	5343170	-	asmbl_21362	none	Trinity_GG_29348_c0_g2_i4	1	STRG.22090.1,STRG.22090.2,STRG.22090.3,STRG.22090.4,blat.proc3829897.chain_2876,blat.proc3829897.chain_2877	6
scaffold_14	alt_acceptor	14536291	14536292	-	asmbl_13674	none	STRG.17699.4	1	STRG.17699.1,STRG.17699.3	2
scaffold_17	spliced_intron	10050958	10051155	+	asmbl_18286	none	STRG.20609.1,blat.proc3829881.chain_1431	2	STRG.20609.2,STRG.20609.3,Trinity_GG_11293_c0_g1_i5,blat.proc3829881.chain_1429,blat.proc3829881.chain_1430,blat.proc3829881.chain_1432	6
scaffold_13	ends_in_intron	4472386	4472386	-	asmbl_9597	none	STRG.15761.2	1	STRG.15761.1	1
scaffold_9	ends_in_intron	17460888	17460888	-	asmbl_55607	none	Trinity_GG_23546_c0_g1_i1,blat.proc3829893.chain_195	2	STRG.11829.1	1
scaffold_26	spliced_intron	9773422	9774174	+	asmbl_35780,asmbl_35786	none	STRG.28501.10,STRG.28501.4	2	STRG.28501.2,STRG.28501.6,Trinity_GG_15770_c0_g1_i5,blat.proc3829885.chain_1534	4
scaffold_16	retained_exon	441815	441991	-	asmbl_16038	none	STRG.19039.4	1	STRG.19039.1	1
scaffold_13	starts_in_intron	4378429	4378429	+	asmbl_10765	none	Trinity_GG_8637_c0_g1_i7,blat.proc3829879.chain_406	2	STRG.15749.1,STRG.15749.2,STRG.15749.3,blat.proc3829879.chain_404	4
scaffold_19	alternate_exon	11560018	11560052	-	asmbl_21635	none	Trinity_GG_29507_c0_g1_i3,blat.proc3829897.chain_3144	2	STRG.22479.1,Trinity_GG_29507_c0_g1_i5,blat.proc3829897.chain_3145	3
scaffold_18	spliced_intron	7662113	7662196	+	asmbl_20793,asmbl_20794	none	STRG.21461.2,STRG.21461.4	2	STRG.21461.3,Trinity_GG_11871_c0_g1_i4	2
scaffold_14	retained_intron	9475503	9475665	+	asmbl_12265,asmbl_12266	none	STRG.17325.1,STRG.17325.3,Trinity_GG_9548_c0_g1_i1,Trinity_GG_9548_c0_g1_i2,blat.proc3829879.chain_2069,blat.proc3829879.chain_2070	6	STRG.17325.2	1
scaffold_17	spliced_intron	14037114	14037195	-	asmbl_19447	none	STRG.20870.2	1	STRG.20870.1,STRG.20870.3	2
scaffold_21	starts_in_intron	6403390	6403390	+	asmbl_28657	none	Trinity_GG_13325_c0_g1_i1,blat.proc3829883.chain_1194	2	STRG.24152.4	1
scaffold_16	ends_in_intron	1805094	1805094	+	asmbl_16888	none	blat.proc3829879.chain_3705	1	STRG.19094.1,blat.proc3829879.chain_3707	2
scaffold_11	ends_in_intron	15633316	15633316	+	asmbl_6097	none	blat.proc3829877.chain_2774	1	STRG.14287.1,STRG.14287.2,blat.proc3829877.chain_2773,blat.proc3829877.chain_2775	4
scaffold_20	spliced_intron	7103318	7104894	-	asmbl_26798	none	STRG.23268.2,blat.proc3829899.chain_228	2	STRG.23268.1,Trinity_GG_29954_c0_g2_i1,blat.proc3829899.chain_227,blat.proc3829899.chain_229	4
scaffold_14	spliced_intron	1715156	1715260	-	asmbl_12890	none	STRG.16794.1,Trinity_GG_26421_c0_g1_i3,blat.proc3829895.chain_1503	3	Trinity_GG_26421_c0_g1_i1,blat.proc3829895.chain_1502	2
scaffold_3	alt_acceptor	11274350	11274351	+	asmbl_40291	none	STRG.3551.1,Trinity_GG_2017_c0_g1_i1,blat.proc3829871.chain_3744	3	STRG.3551.2,Trinity_GG_2017_c0_g1_i2,blat.proc3829871.chain_3743	3
scaffold_10	starts_in_intron	208941	208941	-	asmbl_2842	none	blat.proc3829893.chain_337	1	STRG.11904.1,STRG.11904.2,Trinity_GG_23629_c0_g1_i2,blat.proc3829893.chain_334,blat.proc3829893.chain_335,blat.proc3829893.chain_336	6
scaffold_6	alternate_exon	12970062	12970210	+	asmbl_47395,asmbl_47396,asmbl_47397	none	STRG.8050.1,STRG.8050.2,STRG.8050.3,blat.proc3829875.chain_459,blat.proc3829875.chain_461,blat.proc3829875.chain_462	6	blat.proc3829875.chain_460	1
scaffold_12	skipped_exon	9235345	9236367	-	asmbl_7788,asmbl_7791,asmbl_7794,asmbl_7799	none	STRG.14912.2,STRG.14912.3,blat.proc3829893.chain_3301,blat.proc3829893.chain_3307	4	STRG.14912.4,STRG.14912.5,STRG.14912.7,blat.proc3829893.chain_3298	4
scaffold_23	starts_in_intron	4313457	4313457	+	asmbl_30805	none	blat.proc3829883.chain_2713	1	STRG.25826.1,Trinity_GG_14254_c0_g1_i1,Trinity_GG_14254_c0_g1_i7,blat.proc3829883.chain_2711,blat.proc3829883.chain_2712,blat.proc3829883.chain_2714,blat.proc3829883.chain_2715,blat.proc3829883.chain_2716	8
scaffold_17	retained_exon	5096321	5096465	+	asmbl_17940	none	STRG.20226.3,blat.proc3829897.chain_1178	2	STRG.20226.2,blat.proc3829881.chain_978	2
scaffold_8	alternate_exon	10008242	10008483	+	asmbl_52127	none	STRG.10249.3	1	STRG.10249.1,blat.proc3829875.chain_2754	2
scaffold_4	skipped_exon	14318583	14319063	-	asmbl_41790	none	STRG.5045.2,blat.proc3829889.chain_1093	2	STRG.5045.1,STRG.5045.3,blat.proc3829889.chain_1094,blat.proc3829889.chain_1095	4
scaffold_21	spliced_intron	5170097	5170194	-	asmbl_27646,asmbl_27649,asmbl_27650,asmbl_27651	none	STRG.24038.1,blat.proc3829899.chain_1128,blat.proc3829899.chain_1129,blat.proc3829899.chain_1132,blat.proc3829899.chain_1134	5	Trinity_GG_30430_c0_g1_i8,blat.proc3829899.chain_1130,blat.proc3829899.chain_1131	3
scaffold_3	alt_donor	13423806	13423807	-	asmbl_39213	none	STRG.3690.1	1	STRG.3690.4	1
scaffold_4	spliced_intron	5832068	5832537	+	asmbl_42702	none	STRG.4481.2	1	STRG.4481.1,STRG.4481.3	2
scaffold_20	alternate_exon	425609	426290	+	asmbl_25505	none	STRG.22729.2	1	STRG.22729.4,STRG.22729.5,blat.proc3829901.chain_3120	3
scaffold_20	starts_in_intron	11605465	11605465	-	asmbl_27089	none	blat.proc3829899.chain_708	1	STRG.23657.1,STRG.23657.2,STRG.23657.3	3
scaffold_8	retained_intron	18084510	18084591	-	asmbl_53512,asmbl_53515	none	STRG.10701.2,Trinity_GG_22907_c0_g1_i4,blat.proc3829891.chain_2753	3	STRG.10701.1,STRG.10701.3,Trinity_GG_22907_c0_g1_i1,Trinity_GG_22907_c0_g1_i2,Trinity_GG_22907_c0_g1_i6,blat.proc3829891.chain_2754,blat.proc3829891.chain_2755,blat.proc3829891.chain_2756	8
scaffold_24	spliced_intron	655307	655405	+	asmbl_32038	none	Trinity_GG_14556_c0_g1_i3,blat.proc3829883.chain_3251	2	Trinity_GG_14556_c0_g1_i1,blat.proc3829883.chain_3252	2
scaffold_15	retained_intron	2603301	2603322	+	asmbl_14011,asmbl_14013	none	STRG.18026.1,STRG.18026.2,Trinity_GG_9909_c0_g1_i1,blat.proc3829879.chain_2687	4	STRG.18026.3	1
scaffold_12	starts_in_intron	5641419	5641419	-	asmbl_7650	none	Trinity_GG_25225_c0_g1_i2,blat.proc3829893.chain_3120	2	STRG.14706.1,blat.proc3829893.chain_3121	2
scaffold_14	starts_in_intron	12328896	12328896	-	asmbl_13549	none	blat.proc3829895.chain_2210	1	STRG.17544.1,STRG.17544.2,blat.proc3829895.chain_2211	3
scaffold_8	starts_in_intron	17282549	17282549	-	asmbl_53446	none	Trinity_GG_22912_c4_g1_i1,blat.proc3829891.chain_2769	2	STRG.10643.1,blat.proc3829891.chain_2763,blat.proc3829891.chain_2764	3
scaffold_10	retained_intron	13544278	13544650	-	asmbl_3807	none	Trinity_GG_24229_c0_g1_i3,Trinity_GG_24229_c0_g2_i1,blat.proc3829893.chain_1384,blat.proc3829893.chain_1387	4	STRG.12942.1,blat.proc3829893.chain_1385,blat.proc3829893.chain_1386	3
scaffold_13	starts_in_intron	2949839	2949839	-	asmbl_9452	none	Trinity_GG_25753_c0_g1_i3,blat.proc3829895.chain_349	2	STRG.15578.1,STRG.15578.2,blat.proc3829895.chain_348	3
scaffold_2	spliced_intron	8055440	8055709	-	asmbl_23326	none	STRG.2095.4,blat.proc3829887.chain_2006	2	STRG.2095.5,blat.proc3829887.chain_2007	2
scaffold_13	spliced_intron	16434082	16434150	+	asmbl_11552	none	STRG.16683.2	1	STRG.16683.1,blat.proc3829879.chain_1415	2
scaffold_4	alt_acceptor	16569913	16569914	-	asmbl_41946	none	STRG.5231.1,blat.proc3829889.chain_1305	2	STRG.5231.2	1
scaffold_1	spliced_intron	20989024	20989300	+	asmbl_2660	none	blat.proc3829871.chain_1501	1	STRG.1431.1,Trinity_GG_838_c0_g1_i2,blat.proc3829871.chain_1498	3
scaffold_21	spliced_intron	405731	406300	-	asmbl_27340,asmbl_27341	none	STRG.23722.4,Trinity_GG_30229_c0_g1_i7,Trinity_GG_30229_c0_g1_i9,blat.proc3829899.chain_770,blat.proc3829899.chain_771	5	STRG.23722.1,STRG.23722.2,STRG.23722.3,Trinity_GG_30229_c0_g1_i1,Trinity_GG_30229_c0_g1_i2,blat.proc3829899.chain_768,blat.proc3829899.chain_769,blat.proc3829899.chain_772,blat.proc3829899.chain_773	9
scaffold_14	retained_exon	11676860	11676921	-	asmbl_13504	none	STRG.17497.2,blat.proc3829895.chain_2194	2	STRG.17497.1,blat.proc3829895.chain_2192	2
scaffold_15	alt_acceptor	6962167	6962168	+	asmbl_14212	none	STRG.18295.1	1	STRG.18295.2	1
scaffold_1	alt_donor	13825398	13825399	-	asmbl_853	none	STRG.987.3,blat.proc3829887.chain_900	2	STRG.987.2,blat.proc3829887.chain_899	2
scaffold_11	alt_donor	8722270	8722271	+	asmbl_5791	none	STRG.13889.3,Trinity_GG_7670_c0_g1_i4,blat.proc3829877.chain_2405	3	STRG.13889.1,STRG.13889.2,STRG.13889.4,Trinity_GG_7670_c0_g1_i2,Trinity_GG_7670_c0_g1_i3,blat.proc3829877.chain_2403,blat.proc3829877.chain_2404	7
scaffold_28	starts_in_intron	3329666	3329666	+	asmbl_38168	none	STRG.29532.2	1	STRG.29532.1,blat.proc3829885.chain_2685	2
scaffold_7	spliced_intron	12387637	12387722	-	asmbl_50013,asmbl_50015,asmbl_50016,asmbl_50018,asmbl_50019,asmbl_50020	none	STRG.9328.1,blat.proc3829891.chain_1531,blat.proc3829891.chain_1532,blat.proc3829891.chain_1533,blat.proc3829891.chain_1535,blat.proc3829891.chain_1536,blat.proc3829891.chain_1538	7	blat.proc3829891.chain_1534,blat.proc3829891.chain_1537	2
scaffold_7	retained_exon	15599004	15599072	+	asmbl_51332	none	blat.proc3829875.chain_1995	1	blat.proc3829875.chain_1996,blat.proc3829875.chain_1997	2
scaffold_18	spliced_intron	7867713	7867862	+	asmbl_20822,asmbl_20831	none	STRG.21477.3,STRG.21477.6,Trinity_GG_11877_c0_g1_i7,blat.proc3829881.chain_2468	4	STRG.21477.4,Trinity_GG_11877_c0_g1_i6,blat.proc3829881.chain_2467,blat.proc3829881.chain_2473,blat.proc3829881.chain_2476	5
scaffold_11	alt_donor	12045409	12045410	+	asmbl_5973	none	STRG.14113.1,blat.proc3829877.chain_2532	2	STRG.14113.2,STRG.14113.3,Trinity_GG_7741_c0_g1_i2,blat.proc3829877.chain_2531	4
scaffold_25	alt_acceptor	7735164	7735165	+	asmbl_33672	none	STRG.27579.2	1	STRG.27579.1,blat.proc3829885.chain_552	2
scaffold_11	alt_donor	8722255	8722256	+	asmbl_5792,asmbl_5793,asmbl_5794	none	STRG.13889.1,STRG.13889.2,STRG.13889.4,Trinity_GG_7670_c0_g1_i2,Trinity_GG_7670_c0_g1_i3,blat.proc3829877.chain_2403,blat.proc3829877.chain_2404	7	STRG.13889.3,Trinity_GG_7670_c0_g1_i4,blat.proc3829877.chain_2405	3
scaffold_5	alt_acceptor	9704092	9704093	-	asmbl_45678	none	STRG.6283.2	1	blat.proc3829889.chain_2369,blat.proc3829889.chain_2376	2
scaffold_28	alt_acceptor	5249132	5249133	-	asmbl_37598	none	blat.proc3829901.chain_2694	1	STRG.29654.1,blat.proc3829901.chain_2693,blat.proc3829901.chain_2695,blat.proc3829901.chain_2696	4
scaffold_17	alt_acceptor	2433284	2433285	+	asmbl_17780,asmbl_17781	none	STRG.20019.1,STRG.20019.2,Trinity_GG_10968_c0_g1_i2,Trinity_GG_10968_c0_g1_i4,blat.proc3829881.chain_846,blat.proc3829881.chain_848	6	STRG.20019.3,STRG.20019.4	2
scaffold_16	alt_acceptor	4148802	4148803	+	asmbl_16972	none	STRG.19218.2	1	STRG.19218.1,STRG.19218.3,Trinity_GG_10518_c0_g1_i2,blat.proc3829881.chain_44	4
scaffold_2	alternate_exon	6903725	6903759	+	asmbl_24541	none	STRG.2036.3	1	STRG.2036.1,STRG.2036.2,blat.proc3829871.chain_2019	3
scaffold_1	spliced_intron	11174211	11174990	+	asmbl_2066,asmbl_2069	none	STRG.743.4,STRG.743.5,blat.proc3829871.chain_824	3	STRG.743.1,STRG.743.3,blat.proc3829871.chain_815,blat.proc3829871.chain_818,blat.proc3829871.chain_820,blat.proc3829871.chain_821,blat.proc3829871.chain_825	7
scaffold_9	skipped_exon	6992294	6992756	+	asmbl_54108	none	STRG.11201.3,blat.proc3829875.chain_3701	2	STRG.11201.2,blat.proc3829875.chain_3703	2
scaffold_16	skipped_exon	7235994	7236929	-	asmbl_16355	none	STRG.19382.7	1	STRG.19382.1,STRG.19382.3,STRG.19382.6,STRG.19382.8	4
scaffold_6	retained_intron	3057498	3057599	+	asmbl_46744	none	blat.proc3829873.chain_3438	1	STRG.7308.1,STRG.7308.2,blat.proc3829873.chain_3440,blat.proc3829873.chain_3441,blat.proc3829873.chain_3442,blat.proc3829873.chain_3444,blat.proc3829873.chain_3445,blat.proc3829873.chain_3446	8
scaffold_15	spliced_intron	5453657	5453810	-	asmbl_15217,asmbl_15218,asmbl_15222,asmbl_15223,asmbl_15224	none	STRG.18219.1,STRG.18219.2,STRG.18219.3,blat.proc3829895.chain_2952,blat.proc3829895.chain_2953,blat.proc3829895.chain_2955	6	Trinity_GG_27252_c0_g1_i1,blat.proc3829895.chain_2956,blat.proc3829895.chain_2958	3
scaffold_7	alt_donor	10340314	10340315	-	asmbl_49929,asmbl_49931	none	STRG.9204.1,STRG.9204.3,Trinity_GG_22206_c0_g1_i1,blat.proc3829891.chain_1450	4	STRG.9204.2	1
scaffold_14	starts_in_intron	8404155	8404155	-	asmbl_13294	none	blat.proc3829895.chain_1975	1	STRG.17264.1,STRG.17264.2,STRG.17264.3,STRG.17264.4,blat.proc3829895.chain_1976	5
scaffold_28	ends_in_intron	1641829	1641829	+	asmbl_38012	none	blat.proc3829885.chain_2464	1	STRG.29333.1,STRG.29333.3,blat.proc3829885.chain_2465	3
scaffold_10	retained_intron	9041054	9041325	+	asmbl_4635	none	Trinity_GG_6976_c0_g1_i2,blat.proc3829877.chain_1218	2	STRG.12644.1,Trinity_GG_6976_c0_g1_i1,blat.proc3829877.chain_1219,blat.proc3829877.chain_1220	4
scaffold_2	starts_in_intron	20319390	20319390	+	asmbl_25360	none	blat.proc3829871.chain_3030	1	STRG.2876.1,blat.proc3829871.chain_3027,blat.proc3829871.chain_3028	3
scaffold_24	ends_in_intron	10347295	10347295	-	asmbl_33174	none	blat.proc3829901.chain_264	1	STRG.26976.1,STRG.26976.2	2
scaffold_5	alternate_exon	15041662	15041874	-	asmbl_46021,asmbl_46022	none	STRG.6692.2,STRG.6692.3,blat.proc3829889.chain_2739,blat.proc3829889.chain_2741	4	STRG.6692.4,STRG.6692.5,STRG.6692.7,blat.proc3829889.chain_2738,blat.proc3829889.chain_2742	5
scaffold_1	spliced_intron	12794976	12795080	-	asmbl_774	none	STRG.900.1,blat.proc3829887.chain_801	2	blat.proc3829887.chain_802	1
scaffold_21	spliced_intron	1053818	1053982	-	asmbl_27400,asmbl_27406	none	STRG.23776.1,Trinity_GG_30261_c0_g1_i11,blat.proc3829899.chain_850	3	STRG.23776.3,STRG.23776.4,Trinity_GG_30261_c0_g1_i7,Trinity_GG_30261_c0_g1_i9,blat.proc3829899.chain_851,blat.proc3829899.chain_854	6
scaffold_25	alt_acceptor	7927786	7927787	+	asmbl_33689,asmbl_33690	none	STRG.27606.1,STRG.27606.3,Trinity_GG_15185_c0_g1_i1,Trinity_GG_15185_c0_g1_i2,blat.proc3829885.chain_568,blat.proc3829885.chain_569	6	STRG.27606.2	1
scaffold_14	alt_acceptor	871676	871677	+	asmbl_11750,asmbl_11751	none	STRG.16747.2,STRG.16747.3	2	STRG.16747.1,blat.proc3829879.chain_1427	2
scaffold_20	alternate_exon	7808066	7808222	-	asmbl_26846	none	Trinity_GG_30035_c0_g1_i2,blat.proc3829899.chain_372	2	STRG.23317.1,Trinity_GG_30035_c0_g1_i1,blat.proc3829899.chain_371	3
scaffold_26	retained_intron	4110627	4110718	+	asmbl_35387,asmbl_35388	none	STRG.28091.2,STRG.28091.3	2	STRG.28091.1,blat.proc3829885.chain_967	2
scaffold_24	starts_in_intron	716087	716087	+	asmbl_32045,asmbl_32047	none	STRG.26330.2,Trinity_GG_14530_c0_g1_i4,blat.proc3829883.chain_3215	3	STRG.26330.1,blat.proc3829883.chain_3213,blat.proc3829883.chain_3214	3
scaffold_1	starts_in_intron	4572053	4572053	-	asmbl_202	none	blat.proc3829887.chain_130	1	STRG.277.1,STRG.277.5,blat.proc3829887.chain_131,blat.proc3829887.chain_133,blat.proc3829887.chain_135,blat.proc3829887.chain_137	6
scaffold_4	skipped_exon	12641070	12642425	-	asmbl_41687	none	STRG.4904.2,Trinity_GG_19743_c0_g1_i2,blat.proc3829889.chain_963	3	STRG.4904.1,Trinity_GG_19743_c0_g1_i1,blat.proc3829889.chain_962	3
scaffold_1	ends_in_intron	11825287	11825287	+	asmbl_2140	none	blat.proc3829871.chain_912	1	STRG.801.1,STRG.801.2,Trinity_GG_509_c0_g1_i1,Trinity_GG_509_c0_g1_i3,blat.proc3829871.chain_909,blat.proc3829871.chain_911	6
scaffold_13	retained_intron	2507240	2507489	+	asmbl_10602,asmbl_10605	none	STRG.15546.3,Trinity_GG_8559_c0_g1_i3,Trinity_GG_8559_c0_g1_i4,blat.proc3829879.chain_269,blat.proc3829879.chain_270	5	STRG.15546.2,Trinity_GG_8559_c0_g1_i1,blat.proc3829879.chain_271	3
scaffold_18	alternate_exon	7948289	7948431	-	asmbl_20027	none	STRG.21484.1,blat.proc3829897.chain_2317	2	STRG.21484.3,blat.proc3829897.chain_2319	2
scaffold_28	ends_in_intron	3637143	3637143	+	asmbl_38182	none	blat.proc3829885.chain_2695	1	STRG.29551.1,blat.proc3829885.chain_2694	2
scaffold_3	retained_exon	13897006	13897025	+	asmbl_40424,asmbl_40426	none	STRG.3737.1,blat.proc3829873.chain_143,blat.proc3829873.chain_144	3	STRG.3737.2,blat.proc3829873.chain_145	2
scaffold_9	spliced_intron	3413981	3414140	-	asmbl_54867,asmbl_54870	none	STRG.10946.3,blat.proc3829891.chain_3124	2	blat.proc3829891.chain_3121,blat.proc3829891.chain_3123	2
scaffold_20	starts_in_intron	8016142	8016142	+	asmbl_25893	none	Trinity_GG_12840_c1_g1_i1,blat.proc3829883.chain_381	2	STRG.23342.1,blat.proc3829883.chain_380	2
scaffold_2	spliced_intron	7892477	7892601	+	asmbl_24625,asmbl_24626,asmbl_24627,asmbl_24628,asmbl_24633	none	STRG.2086.1,STRG.2086.2,STRG.2086.3,blat.proc3829871.chain_2189,blat.proc3829871.chain_2193,blat.proc3829871.chain_2195,blat.proc3829871.chain_2196,blat.proc3829871.chain_2199	8	Trinity_GG_1187_c0_g1_i13,blat.proc3829871.chain_2192	2
scaffold_9	spliced_intron	537756	537789	-	asmbl_54773	none	STRG.10774.2	1	STRG.10774.1,Trinity_GG_22997_c0_g1_i1,blat.proc3829891.chain_2944	3
scaffold_9	alternate_exon	3922572	3922868	+	asmbl_53914	none	STRG.11003.2	1	STRG.11003.1	1
scaffold_20	retained_intron	1490365	1490400	+	asmbl_25570	none	Trinity_GG_12610_c1_g1_i3,Trinity_GG_12610_c1_g1_i4,blat.proc3829883.chain_15,blat.proc3829883.chain_16,blat.proc3829883.chain_17	5	STRG.22855.2	1
scaffold_285	starts_in_intron	1396	1396	+	asmbl_38579	none	STRG.30236.2	1	STRG.30236.1,blat.proc3829885.chain_3272,blat.proc3829885.chain_3275,blat.proc3829885.chain_3276	4
scaffold_3	alternate_exon	19825087	19825175	-	asmbl_39606,asmbl_39607	none	STRG.4095.3,blat.proc3829889.chain_161	2	STRG.4095.2	1
scaffold_28	alt_acceptor	5217702	5217703	-	asmbl_37576	none	STRG.29649.4	1	STRG.29649.2	1
scaffold_22	skipped_exon	10237845	10238756	-	asmbl_30356,asmbl_30358	none	STRG.25350.2,STRG.25350.3,blat.proc3829899.chain_2420	3	STRG.25350.1,blat.proc3829899.chain_2421	2
scaffold_8	ends_in_intron	4279260	4279260	-	asmbl_52768	none	blat.proc3829891.chain_2048	1	STRG.9901.1	1
scaffold_3	retained_intron	13327018	13327170	-	asmbl_39199,asmbl_39202	none	STRG.3677.2,Trinity_GG_19030_c0_g1_i3,blat.proc3829887.chain_3454	3	STRG.3677.1,Trinity_GG_19030_c0_g1_i2,blat.proc3829887.chain_3455	3
scaffold_14	spliced_intron	9506808	9506827	-	asmbl_13365	none	STRG.17333.1,blat.proc3829895.chain_2054	2	Trinity_GG_26734_c1_g1_i1	1
scaffold_28	starts_in_intron	5638636	5638636	-	asmbl_37633	none	blat.proc3829901.chain_2824	1	STRG.29677.1,STRG.29677.2,STRG.29677.4,Trinity_GG_33665_c0_g1_i3,blat.proc3829901.chain_2823,blat.proc3829901.chain_2825,blat.proc3829901.chain_2827	7
scaffold_15	starts_in_intron	12598832	12598832	-	asmbl_15607	none	blat.proc3829895.chain_3480	1	STRG.18702.1,Trinity_GG_27520_c0_g1_i3,Trinity_GG_27520_c0_g1_i5,blat.proc3829895.chain_3477,blat.proc3829895.chain_3478,blat.proc3829895.chain_3481	6
scaffold_5	alt_acceptor	16282534	16282535	+	asmbl_44735,asmbl_44736	none	Trinity_GG_3715_c0_g1_i5,Trinity_GG_3715_c0_g1_i6,blat.proc3829873.chain_2926,blat.proc3829873.chain_2927	4	Trinity_GG_3715_c0_g1_i3,blat.proc3829873.chain_2925	2
scaffold_3	skipped_exon	1424842	1427732	-	asmbl_38663	none	STRG.2958.2	1	STRG.2958.3,blat.proc3829887.chain_2734	2
scaffold_24	starts_in_intron	8754273	8754273	-	asmbl_33097	none	blat.proc3829901.chain_161	1	STRG.26871.1,STRG.26871.2,blat.proc3829901.chain_159,blat.proc3829901.chain_160	4
scaffold_20	retained_intron	5923146	5923230	-	asmbl_26707,asmbl_26711,asmbl_26712,asmbl_26713	none	STRG.23184.4,blat.proc3829899.chain_144,blat.proc3829899.chain_145,blat.proc3829899.chain_150	4	STRG.23184.1,STRG.23184.2,STRG.23184.3,blat.proc3829899.chain_147,blat.proc3829899.chain_148,blat.proc3829899.chain_149	6
scaffold_12	retained_exon	4952498	4952570	-	asmbl_7598	none	STRG.14653.1,blat.proc3829893.chain_3046	2	STRG.14653.2,blat.proc3829893.chain_3045	2
scaffold_3	retained_intron	9518073	9518444	+	asmbl_40184	none	Trinity_GG_1959_c0_g1_i3,blat.proc3829871.chain_3637	2	STRG.3434.1,STRG.3434.2,Trinity_GG_1959_c0_g1_i1,blat.proc3829871.chain_3639,blat.proc3829871.chain_3641	5
scaffold_6	alternate_exon	14107349	14107497	-	asmbl_48923	none	STRG.8164.2	1	STRG.8164.1	1
scaffold_13	retained_intron	7266430	7266595	-	asmbl_9833	none	blat.proc3829895.chain_811	1	STRG.16009.1,blat.proc3829895.chain_807,blat.proc3829895.chain_808,blat.proc3829895.chain_809	4
scaffold_13	spliced_intron	6950776	6951096	-	asmbl_9779	none	STRG.15968.4	1	STRG.15968.1,Trinity_GG_25972_c0_g1_i5	2
scaffold_21	alt_donor	8231021	8231022	-	asmbl_27923	none	STRG.24344.1,blat.proc3829899.chain_1446	2	STRG.24344.2,STRG.24344.4	2
scaffold_1	alternate_exon	20729966	20732246	-	asmbl_1196	none	STRG.1416.2,blat.proc3829887.chain_1294	2	STRG.1416.3	1
scaffold_15	retained_intron	14663329	14663440	+	asmbl_14640	none	Trinity_GG_10354_c0_g1_i2,blat.proc3829879.chain_3458	2	STRG.18874.2	1
scaffold_3	alt_acceptor	13831839	13831840	-	asmbl_39257	none	STRG.3720.1	1	blat.proc3829887.chain_3510	1
scaffold_26	retained_exon	4142374	4142407	+	asmbl_35402	none	STRG.28106.1	1	STRG.28106.2,STRG.28106.4	2
scaffold_4	retained_exon	10452291	10452441	-	asmbl_41588,asmbl_41589,asmbl_41590,asmbl_41594,asmbl_41597	none	STRG.4795.1,STRG.4795.2,STRG.4795.3,blat.proc3829889.chain_833,blat.proc3829889.chain_835,blat.proc3829889.chain_839	6	blat.proc3829889.chain_838	1
scaffold_10	ends_in_intron	7107328	7107328	+	asmbl_4540	none	Trinity_GG_6890_c0_g1_i2,blat.proc3829877.chain_1058	2	STRG.12516.1,Trinity_GG_6890_c0_g1_i1,blat.proc3829877.chain_1059	3
scaffold_15	retained_intron	4232612	4232777	+	asmbl_14077	none	Trinity_GG_9974_c0_g1_i3,blat.proc3829879.chain_2812	2	STRG.18160.1,STRG.18160.2,blat.proc3829879.chain_2806,blat.proc3829879.chain_2808,blat.proc3829879.chain_2809,blat.proc3829879.chain_2810,blat.proc3829879.chain_2811,blat.proc3829879.chain_2813,blat.proc3829879.chain_2814	9
scaffold_22	spliced_intron	10300224	10300260	+	asmbl_29640	none	STRG.25364.2	1	STRG.25364.1	1
scaffold_9	ends_in_intron	5551431	5551431	-	asmbl_54976	none	blat.proc3829891.chain_3228	1	STRG.11124.1,STRG.11124.3,blat.proc3829891.chain_3225,blat.proc3829891.chain_3226	4
scaffold_21	ends_in_intron	1754603	1754603	-	asmbl_27445,asmbl_27449	none	STRG.23809.3,blat.proc3829899.chain_887	2	STRG.23809.1,STRG.23809.2,blat.proc3829899.chain_886	3
scaffold_19	alternate_exon	11772123	11772170	+	asmbl_22525	none	STRG.22491.1,Trinity_GG_12441_c0_g1_i2,blat.proc3829881.chain_3436	3	STRG.22491.2,Trinity_GG_12441_c0_g1_i1,blat.proc3829881.chain_3435	3
scaffold_10	alt_donor	15426764	15426765	+	asmbl_4961	none	STRG.13051.1	1	STRG.13051.2	1
scaffold_9	alternate_exon	12630717	12631094	+	asmbl_54435	none	STRG.11574.4	1	STRG.11574.1,STRG.11574.2,Trinity_GG_6469_c0_g1_i5,Trinity_GG_6469_c0_g1_i6,Trinity_GG_6469_c0_g1_i8,blat.proc3829877.chain_353,blat.proc3829877.chain_355,blat.proc3829877.chain_357	8
scaffold_27	alternate_exon	1971563	1972274	-	asmbl_36747	none	STRG.28657.1,blat.proc3829901.chain_1842	2	STRG.28657.3	1
scaffold_10	alternate_exon	2042403	2042457	-	asmbl_3014	none	STRG.12049.2	1	STRG.12049.1,blat.proc3829893.chain_505	2
scaffold_1	starts_in_intron	20351441	20351441	+	asmbl_2607	none	STRG.1398.9	1	STRG.1398.2,STRG.1398.3,STRG.1398.4,STRG.1398.5,STRG.1398.6	5
scaffold_16	spliced_intron	7520401	7520519	+	asmbl_17139	none	STRG.19391.3,blat.proc3829881.chain_221	2	blat.proc3829881.chain_223	1
scaffold_22	retained_intron	7893263	7893360	-	asmbl_30200,asmbl_30201	none	STRG.25122.2,blat.proc3829899.chain_2219,blat.proc3829899.chain_2221	3	STRG.25122.1	1
scaffold_6	starts_in_intron	8634922	8634922	-	asmbl_48511	none	blat.proc3829889.chain_3746	1	STRG.7735.1,STRG.7735.2,Trinity_GG_21380_c0_g1_i3,Trinity_GG_21380_c0_g1_i4,blat.proc3829889.chain_3747,blat.proc3829889.chain_3748	6
scaffold_19	spliced_intron	7701981	7702197	+	asmbl_22293,asmbl_22295	none	STRG.22243.1,STRG.22243.2,blat.proc3829881.chain_3149	3	blat.proc3829881.chain_3150,blat.proc3829881.chain_3151	2
scaffold_19	retained_intron	5345825	5345940	-	asmbl_21361	none	STRG.22090.1	1	STRG.22090.2,STRG.22090.3,blat.proc3829897.chain_2876,blat.proc3829897.chain_2877	4
scaffold_6	alt_acceptor	12500043	12500044	+	asmbl_47350	none	blat.proc3829875.chain_345	1	STRG.8005.1,blat.proc3829875.chain_346	2
scaffold_2	spliced_intron	14277290	14277855	+	asmbl_24926,asmbl_24927,asmbl_24928,asmbl_24929,asmbl_24930,asmbl_24932,asmbl_24934	none	STRG.2425.1,STRG.2425.2,STRG.2425.3,STRG.2425.4,blat.proc3829871.chain_2541,blat.proc3829871.chain_2542,blat.proc3829871.chain_2543	7	blat.proc3829871.chain_2545	1
scaffold_24	retained_exon	6832782	6832859	+	asmbl_32352,asmbl_32354,asmbl_32356,asmbl_32359	none	STRG.26717.1,STRG.26717.2,blat.proc3829883.chain_3657,blat.proc3829883.chain_3660,blat.proc3829883.chain_3661,blat.proc3829883.chain_3662	6	STRG.26717.4	1
scaffold_6	ends_in_intron	12077751	12077751	-	asmbl_48726	none	Trinity_GG_21534_c1_g1_i2,blat.proc3829891.chain_233	2	STRG.7975.1,Trinity_GG_21534_c1_g1_i1,blat.proc3829891.chain_234	3
scaffold_1	spliced_intron	10949081	10949745	+	asmbl_2025,asmbl_2026,asmbl_2030,asmbl_2031	none	STRG.713.3,STRG.713.4,blat.proc3829871.chain_749,blat.proc3829871.chain_750,blat.proc3829871.chain_752,blat.proc3829871.chain_754	6	STRG.713.2,blat.proc3829871.chain_748,blat.proc3829871.chain_753	3
scaffold_19	spliced_intron	11578071	11578294	-	asmbl_21640	none	STRG.22488.2,Trinity_GG_29528_c0_g1_i2,blat.proc3829897.chain_3178	3	STRG.22488.1,blat.proc3829897.chain_3179	2
scaffold_17	starts_in_intron	2535041	2535041	-	asmbl_18803	none	blat.proc3829897.chain_986	1	STRG.20035.1,STRG.20035.2,blat.proc3829897.chain_984,blat.proc3829897.chain_985,blat.proc3829897.chain_987	5
scaffold_9	alternate_exon	9618049	9618111	-	asmbl_55187	none	STRG.11320.2,blat.proc3829891.chain_3417	2	STRG.11320.1,blat.proc3829891.chain_3418	2
scaffold_19	skipped_exon	6407454	6409048	-	asmbl_21423	none	STRG.22157.1,blat.proc3829897.chain_2843	2	STRG.22157.3,blat.proc3829897.chain_2842,blat.proc3829897.chain_2844	3
scaffold_20	starts_in_intron	10132836	10132836	+	asmbl_26089	none	Trinity_GG_13021_c1_g1_i1,blat.proc3829883.chain_652	2	STRG.23543.2,blat.proc3829883.chain_650	2
scaffold_4	retained_intron	5228399	5228662	-	asmbl_41313,asmbl_41314	none	STRG.4417.2,Trinity_GG_19430_c0_g1_i1,blat.proc3829889.chain_440	3	STRG.4417.4,blat.proc3829889.chain_438	2
scaffold_6	starts_in_intron	18756424	18756424	-	asmbl_49213	none	Trinity_GG_21890_c0_g1_i2,blat.proc3829891.chain_873	2	STRG.8540.1,Trinity_GG_21890_c0_g1_i3,blat.proc3829891.chain_874	3
scaffold_19	spliced_intron	7586916	7587075	-	asmbl_21455	none	blat.proc3829897.chain_2932	1	STRG.22232.1,STRG.22232.2	2
scaffold_12	spliced_intron	4721793	4722413	-	asmbl_7568,asmbl_7569	none	STRG.14636.1,STRG.14636.2	2	blat.proc3829893.chain_3003,blat.proc3829893.chain_3004	2
scaffold_11	spliced_intron	11930763	11931002	-	asmbl_7019,asmbl_7022,asmbl_7023	none	STRG.14160.3,STRG.14160.4,STRG.14160.5	3	STRG.14160.1,blat.proc3829893.chain_2562	2
scaffold_10	retained_intron	17328288	17328429	+	asmbl_5038	none	STRG.13171.1	1	STRG.13171.2	1
scaffold_15	alternate_exon	10880031	10881691	-	asmbl_15478	none	STRG.18561.1,blat.proc3829895.chain_3298	2	STRG.18561.3,Trinity_GG_27423_c1_g1_i1,blat.proc3829895.chain_3300	3
scaffold_24	alternate_exon	9084646	9087625	+	asmbl_32504,asmbl_32506,asmbl_32507	none	STRG.26930.1,STRG.26930.2,blat.proc3829885.chain_81,blat.proc3829885.chain_84	4	STRG.26930.4,blat.proc3829885.chain_82	2
scaffold_22	alt_acceptor	509130	509131	-	asmbl_29860	none	Trinity_GG_30818_c0_g1_i8,blat.proc3829899.chain_1825	2	STRG.24685.2,STRG.24685.3,STRG.24685.4,STRG.24685.5,Trinity_GG_30818_c0_g1_i1,Trinity_GG_30818_c0_g1_i13,Trinity_GG_30818_c0_g1_i17,Trinity_GG_30818_c0_g1_i19,blat.proc3829899.chain_1822,blat.proc3829899.chain_1823,blat.proc3829899.chain_1824,blat.proc3829899.chain_1827,blat.proc3829899.chain_1830,blat.proc3829899.chain_1831,blat.proc3829899.chain_1836	15
scaffold_2	retained_intron	926100	926762	+	asmbl_24177	none	STRG.1569.3	1	STRG.1569.4	1
scaffold_13	starts_in_intron	311945	311945	+	asmbl_10445	none	Trinity_GG_8477_c0_g1_i2,blat.proc3829879.chain_84	2	STRG.15418.1,Trinity_GG_8477_c0_g1_i1,blat.proc3829879.chain_83	3
scaffold_26	alternate_exon	3622911	3623023	+	asmbl_35334	none	STRG.28026.3	1	STRG.28026.2,blat.proc3829885.chain_998	2
scaffold_8	retained_exon	16503929	16504096	-	asmbl_53420,asmbl_53421,asmbl_53423,asmbl_53425,asmbl_53430	none	STRG.10621.1,blat.proc3829891.chain_2859,blat.proc3829891.chain_2862,blat.proc3829891.chain_2865,blat.proc3829891.chain_2871	5	STRG.10621.3,STRG.10621.4,STRG.10621.5,Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2860,blat.proc3829891.chain_2863,blat.proc3829891.chain_2864,blat.proc3829891.chain_2867,blat.proc3829891.chain_2868,blat.proc3829891.chain_2869,blat.proc3829891.chain_2870	15
scaffold_3	ends_in_intron	16940969	16940969	-	asmbl_39470	none	blat.proc3829889.chain_13	1	STRG.3938.1,blat.proc3829889.chain_12	2
scaffold_25	alternate_exon	1903666	1903741	-	asmbl_34040	none	STRG.27182.2	1	STRG.27182.3,STRG.27182.4	2
scaffold_18	alt_donor	1894702	1894703	-	asmbl_19699,asmbl_19701,asmbl_19702	none	STRG.21072.2,STRG.21072.4,STRG.21072.6	3	STRG.21072.1,STRG.21072.10,STRG.21072.3,STRG.21072.5,STRG.21072.7,STRG.21072.8,STRG.21072.9,blat.proc3829897.chain_1890,blat.proc3829897.chain_1891,blat.proc3829897.chain_1893,blat.proc3829897.chain_1895,blat.proc3829897.chain_1896,blat.proc3829897.chain_1897,blat.proc3829897.chain_1898,blat.proc3829897.chain_1899,blat.proc3829897.chain_1901,blat.proc3829897.chain_1902	17
scaffold_14	alt_donor	11688845	11688846	-	asmbl_13507	none	STRG.17500.2,blat.proc3829895.chain_2222,blat.proc3829895.chain_2225	3	STRG.17500.1,blat.proc3829895.chain_2223,blat.proc3829895.chain_2224	3
scaffold_20	starts_in_intron	11948814	11948814	-	asmbl_27132	none	STRG.23687.3,blat.proc3829899.chain_604	2	STRG.23687.2,blat.proc3829899.chain_603,blat.proc3829899.chain_605,blat.proc3829899.chain_606	4
scaffold_25	alt_acceptor	4533830	4533831	-	asmbl_34189	none	STRG.27373.2	1	STRG.27373.1,Trinity_GG_32322_c0_g1_i3,Trinity_GG_32322_c0_g1_i4,blat.proc3829901.chain_640,blat.proc3829901.chain_642	5
scaffold_28	alt_donor	5611352	5611353	-	asmbl_37627	none	STRG.29674.2	1	STRG.29674.3,Trinity_GG_33655_c0_g1_i8,blat.proc3829901.chain_2809	3
scaffold_10	retained_intron	2668615	2668805	+	asmbl_4267	none	blat.proc3829877.chain_805	1	STRG.12074.1,blat.proc3829877.chain_804	2
scaffold_1	alt_donor	6661711	6661712	+	asmbl_1833	none	STRG.451.1,blat.proc3829871.chain_492	2	STRG.451.2	1
scaffold_2	retained_intron	8063944	8064058	+	asmbl_24646	none	Trinity_GG_1147_c0_g1_i1,blat.proc3829871.chain_2095	2	STRG.2103.1,blat.proc3829871.chain_2094	2
scaffold_10	spliced_intron	5495263	5495288	+	asmbl_4454	none	STRG.12374.1,blat.proc3829877.chain_1006	2	Trinity_GG_6856_c0_g1_i2	1
scaffold_9	alt_acceptor	18389543	18389544	+	asmbl_54637	none	STRG.11879.2,blat.proc3829877.chain_596	2	STRG.11879.1,STRG.11879.3	2
scaffold_16	alternate_exon	7218051	7240373	-	asmbl_16355	none	STRG.19382.7	1	STRG.19382.9	1
scaffold_1	retained_exon	853955	854039	+	asmbl_1427	none	STRG.42.5	1	STRG.42.2,STRG.42.3,STRG.42.4,STRG.42.6	4
scaffold_19	spliced_intron	13007510	13007842	+	asmbl_22644,asmbl_22647,asmbl_22648,asmbl_22650	none	STRG.22609.1,Trinity_GG_12510_c0_g1_i4,Trinity_GG_12510_c0_g1_i5,Trinity_GG_12510_c0_g1_i6,Trinity_GG_12510_c0_g1_i8,blat.proc3829881.chain_3576,blat.proc3829881.chain_3577,blat.proc3829881.chain_3579,blat.proc3829881.chain_3584	9	Trinity_GG_12510_c0_g1_i12,blat.proc3829881.chain_3580	2
scaffold_21	spliced_intron	407848	408231	-	asmbl_27339,asmbl_27341,asmbl_27343	none	STRG.23722.2,Trinity_GG_30229_c0_g1_i1,Trinity_GG_30229_c0_g1_i9,blat.proc3829899.chain_769,blat.proc3829899.chain_771,blat.proc3829899.chain_772	6	STRG.23722.1,STRG.23722.3,STRG.23722.4,STRG.23722.5,Trinity_GG_30229_c0_g1_i2,Trinity_GG_30229_c0_g1_i7,blat.proc3829899.chain_768,blat.proc3829899.chain_770,blat.proc3829899.chain_773,blat.proc3829899.chain_774	10
scaffold_23	spliced_intron	3233100	3233254	-	asmbl_31508	none	STRG.25734.1,blat.proc3829899.chain_2811	2	Trinity_GG_31384_c0_g1_i2,blat.proc3829899.chain_2812	2
scaffold_13	alt_acceptor	5208648	5208649	+	asmbl_10811	none	STRG.15811.1,Trinity_GG_8694_c0_g1_i1,blat.proc3829879.chain_502	3	STRG.15811.3	1
scaffold_28	ends_in_intron	148035	148035	-	asmbl_37220	none	blat.proc3829901.chain_2323	1	STRG.29225.1,blat.proc3829901.chain_2324	2
scaffold_3	retained_intron	13648767	13648874	-	asmbl_39227	none	STRG.3705.1,Trinity_GG_19021_c0_g1_i2,blat.proc3829887.chain_3437	3	STRG.3705.2,Trinity_GG_19021_c0_g1_i1,blat.proc3829887.chain_3436	3
scaffold_1	retained_intron	17729078	17729199	+	asmbl_2517	none	blat.proc3829871.chain_1306	1	STRG.1242.1,blat.proc3829871.chain_1307	2
scaffold_5	skipped_exon	18819679	18821046	+	asmbl_44944	none	STRG.7001.1,blat.proc3829873.chain_3138	2	STRG.7001.2	1
scaffold_2	alt_acceptor	10376044	10376045	-	asmbl_23429,asmbl_23430	none	STRG.2212.1,blat.proc3829887.chain_2109,blat.proc3829887.chain_2111	3	STRG.2212.2	1
scaffold_13	starts_in_intron	11271700	11271700	-	asmbl_10038	none	STRG.16275.2	1	STRG.16275.1,blat.proc3829895.chain_1011	2
scaffold_2	alt_acceptor	13902712	13902713	-	asmbl_23552	none	blat.proc3829887.chain_2288	1	STRG.2382.1,STRG.2382.2,blat.proc3829887.chain_2287,blat.proc3829887.chain_2289,blat.proc3829887.chain_2290	5
scaffold_23	spliced_intron	4900167	4900265	+	asmbl_30833,asmbl_30834,asmbl_30836	none	STRG.25862.1,STRG.25862.2,STRG.25862.3,Trinity_GG_14276_c0_g1_i4,blat.proc3829883.chain_2747	5	Trinity_GG_14276_c0_g1_i3,blat.proc3829883.chain_2746	2
scaffold_8	alt_acceptor	8747341	8747342	+	asmbl_52016	none	STRG.10124.1,blat.proc3829875.chain_2641	2	STRG.10124.2,blat.proc3829875.chain_2640	2
scaffold_16	ends_in_intron	3690794	3690794	-	asmbl_16165	none	Trinity_GG_27745_c0_g1_i1,blat.proc3829897.chain_153	2	STRG.19163.1,blat.proc3829897.chain_154	2
scaffold_6	starts_in_intron	3821697	3821697	+	asmbl_46817	none	Trinity_GG_4024_c0_g1_i1,blat.proc3829873.chain_3466	2	STRG.7376.1,STRG.7376.2,Trinity_GG_4024_c0_g1_i3,blat.proc3829873.chain_3464,blat.proc3829873.chain_3465	5
scaffold_6	spliced_intron	3291018	3291248	+	asmbl_46771	none	STRG.7328.1,blat.proc3829873.chain_3455	2	blat.proc3829873.chain_3456	1
scaffold_26	starts_in_intron	3361738	3361738	+	asmbl_35305	none	Trinity_GG_15397_c1_g1_i3,blat.proc3829885.chain_897	2	STRG.28006.2,blat.proc3829885.chain_898,blat.proc3829885.chain_899	3
scaffold_27	retained_exon	1986906	1986978	+	asmbl_36019,asmbl_36021	none	STRG.28663.1,Trinity_GG_15865_c1_g1_i3,blat.proc3829885.chain_1702,blat.proc3829885.chain_1703	4	STRG.28663.2,blat.proc3829885.chain_1704	2
scaffold_23	retained_intron	1739076	1739233	+	asmbl_30657	none	blat.proc3829883.chain_2547	1	blat.proc3829883.chain_2548,blat.proc3829883.chain_2549	2
scaffold_10	alt_acceptor	10098113	10098114	-	asmbl_3613	none	Trinity_GG_24121_c0_g1_i2,blat.proc3829893.chain_1216	2	STRG.12704.1,Trinity_GG_24121_c0_g1_i1,blat.proc3829893.chain_1217	3
scaffold_5	starts_in_intron	3936803	3936803	-	asmbl_45320	none	STRG.5856.2	1	STRG.5857.1	1
scaffold_1	alternate_exon	7115059	7115245	-	asmbl_420	none	STRG.505.1,blat.proc3829887.chain_403	2	STRG.505.2	1
scaffold_6	alt_acceptor	8054838	8054839	+	asmbl_47029,asmbl_47030	none	STRG.7677.1,blat.proc3829875.chain_31	2	STRG.7677.2	1
scaffold_19	alternate_exon	3669985	3670196	-	asmbl_21322	none	STRG.22034.2,Trinity_GG_29269_c0_g1_i5,blat.proc3829897.chain_2739	3	STRG.22034.1,STRG.22034.3,Trinity_GG_29269_c0_g1_i2,Trinity_GG_29269_c0_g1_i6,blat.proc3829897.chain_2742,blat.proc3829897.chain_2743,blat.proc3829897.chain_2745	7
scaffold_5	starts_in_intron	12842142	12842142	+	asmbl_44497	none	Trinity_GG_3545_c0_g1_i1,blat.proc3829873.chain_2642	2	STRG.6508.1,Trinity_GG_3545_c0_g1_i3,blat.proc3829873.chain_2643,blat.proc3829873.chain_2644	4
scaffold_5	starts_in_intron	16845527	16845527	-	asmbl_46159	none	STRG.6862.2,Trinity_GG_20830_c1_g1_i1,blat.proc3829889.chain_2858	3	STRG.6862.3	1
scaffold_24	retained_intron	1078652	1078823	+	asmbl_32075	none	STRG.26363.2,blat.proc3829883.chain_3302	2	STRG.26363.3,blat.proc3829883.chain_3301	2
scaffold_16	ends_in_intron	6133760	6133760	+	asmbl_17065	none	Trinity_GG_10584_c0_g1_i2,blat.proc3829881.chain_196	2	STRG.19335.1,STRG.19335.2,blat.proc3829881.chain_197,blat.proc3829881.chain_198,blat.proc3829881.chain_199	5
scaffold_19	retained_intron	12207952	12208221	+	asmbl_22568	none	STRG.22538.2,Trinity_GG_12469_c0_g1_i2,Trinity_GG_12469_c0_g1_i3,blat.proc3829881.chain_3483,blat.proc3829881.chain_3485	5	STRG.22538.1,Trinity_GG_12469_c0_g1_i1,blat.proc3829881.chain_3486	3
scaffold_10	ends_in_intron	3285824	3285824	-	asmbl_3098	none	blat.proc3829893.chain_576	1	STRG.12143.1,blat.proc3829893.chain_577	2
scaffold_15	alt_acceptor	11811869	11811870	-	asmbl_15551	none	STRG.18623.1,blat.proc3829895.chain_3414	2	STRG.18623.2	1
scaffold_1325	alt_acceptor	2059	2060	+	asmbl_11687	none	STRG.30565.4	1	STRG.30565.1,STRG.30565.3	2
scaffold_7	retained_intron	13173894	13174034	-	asmbl_50107	none	Trinity_GG_22303_c0_g1_i1,blat.proc3829891.chain_1651	2	STRG.9415.1,STRG.9415.2,blat.proc3829891.chain_1650	3
scaffold_9	alt_acceptor	16764343	16764344	-	asmbl_55595	none	STRG.11814.2	1	STRG.11814.1,blat.proc3829893.chain_228	2
scaffold_19	ends_in_intron	13006524	13006524	+	asmbl_22651,asmbl_22652	none	Trinity_GG_12510_c0_g1_i13,Trinity_GG_12510_c0_g1_i14,blat.proc3829881.chain_3581,blat.proc3829881.chain_3582	4	STRG.22609.1,STRG.22609.2,Trinity_GG_12510_c0_g1_i1,Trinity_GG_12510_c0_g1_i10,Trinity_GG_12510_c0_g1_i11,Trinity_GG_12510_c0_g1_i5,Trinity_GG_12510_c0_g1_i6,blat.proc3829881.chain_3576,blat.proc3829881.chain_3578,blat.proc3829881.chain_3583,blat.proc3829881.chain_3584,blat.proc3829881.chain_3585	12
scaffold_5	spliced_intron	13316127	13316220	-	asmbl_45915,asmbl_45918,asmbl_45919,asmbl_45920	none	STRG.6578.1,STRG.6578.2,blat.proc3829889.chain_2546,blat.proc3829889.chain_2547	4	blat.proc3829889.chain_2544,blat.proc3829889.chain_2545	2
scaffold_14	starts_in_intron	8496145	8496145	-	asmbl_13305	none	STRG.17276.1,blat.proc3829895.chain_1967	2	STRG.17276.2,blat.proc3829895.chain_1966	2
scaffold_15	starts_in_intron	4962169	4962169	+	asmbl_14118,asmbl_14125	none	STRG.18193.3,Trinity_GG_9948_c0_g1_i3,blat.proc3829879.chain_2762	3	STRG.18193.1,blat.proc3829879.chain_2759,blat.proc3829879.chain_2760,blat.proc3829879.chain_2761	4
scaffold_14	retained_exon	6646625	6647230	-	asmbl_13126	none	STRG.17095.1	1	STRG.17095.3	1
scaffold_1	retained_intron	14357027	14357107	+	asmbl_2369	none	blat.proc3829871.chain_1121	1	STRG.1032.1,STRG.1032.2,blat.proc3829871.chain_1120,blat.proc3829871.chain_1122,blat.proc3829871.chain_1124	5
scaffold_4	starts_in_intron	14318363	14318363	-	asmbl_41791	none	blat.proc3829889.chain_1096	1	STRG.5045.1,STRG.5045.2,STRG.5045.3,blat.proc3829889.chain_1093,blat.proc3829889.chain_1094,blat.proc3829889.chain_1095	6
scaffold_18	starts_in_intron	2081444	2081444	+	asmbl_20428,asmbl_20429	none	STRG.21100.2,STRG.21100.3,blat.proc3829881.chain_1964,blat.proc3829881.chain_1965	4	STRG.21100.1,blat.proc3829881.chain_1967	2
scaffold_18	alternate_exon	5987241	5994110	+	asmbl_20671,asmbl_20675	none	blat.proc3829881.chain_2206,blat.proc3829881.chain_2207,blat.proc3829881.chain_2208,blat.proc3829881.chain_2209	4	STRG.21346.1	1
scaffold_10	ends_in_intron	922025	922025	+	asmbl_4160,asmbl_4161	none	STRG.11958.2,blat.proc3829877.chain_641	2	STRG.11958.1,blat.proc3829877.chain_642,blat.proc3829877.chain_643,blat.proc3829877.chain_644,blat.proc3829877.chain_645	5
scaffold_21	alt_acceptor	2483177	2483178	-	asmbl_27491,asmbl_27493,asmbl_27494	none	STRG.23859.1,STRG.23859.2,STRG.23859.3,Trinity_GG_30317_c0_g1_i2,blat.proc3829899.chain_950	5	STRG.23859.4	1
scaffold_22	starts_in_intron	8076486	8076486	+	asmbl_29551	none	Trinity_GG_13939_c0_g1_i2,blat.proc3829883.chain_2228	2	STRG.25148.1,Trinity_GG_13939_c0_g1_i1,blat.proc3829883.chain_2227	3
scaffold_25	spliced_intron	8707410	8707661	+	asmbl_33748,asmbl_33750,asmbl_33751	none	STRG.27679.3,blat.proc3829885.chain_692,blat.proc3829885.chain_695,blat.proc3829885.chain_698	4	STRG.27679.2,blat.proc3829885.chain_699	2
scaffold_24	alt_acceptor	6449102	6449103	+	asmbl_32319,asmbl_32323	none	STRG.26679.1,blat.proc3829883.chain_3602,blat.proc3829883.chain_3603	3	STRG.26679.2,blat.proc3829883.chain_3599	2
scaffold_10	starts_in_intron	8557517	8557517	-	asmbl_3515	none	blat.proc3829893.chain_1112	1	STRG.12606.1,blat.proc3829893.chain_1110,blat.proc3829893.chain_1111	3
scaffold_13	alt_acceptor	13283820	13283821	+	asmbl_11365	none	STRG.16387.2	1	STRG.16387.1,blat.proc3829879.chain_1158	2
scaffold_1	retained_intron	18322459	18322534	+	asmbl_2532,asmbl_2534	none	STRG.1288.2,blat.proc3829871.chain_1315,blat.proc3829871.chain_1316	3	STRG.1288.1	1
scaffold_3	skipped_exon	6218352	6219358	-	asmbl_38875,asmbl_38880	none	STRG.3276.1,blat.proc3829887.chain_2934,blat.proc3829887.chain_2935	3	STRG.3276.2,blat.proc3829887.chain_2936	2
scaffold_2	skipped_exon	7880738	7881679	+	asmbl_24622	none	Trinity_GG_1183_c0_g1_i2,blat.proc3829871.chain_2181	2	STRG.2088.1,Trinity_GG_1183_c0_g1_i10,Trinity_GG_1183_c0_g1_i16,Trinity_GG_1183_c0_g1_i4,blat.proc3829871.chain_2178,blat.proc3829871.chain_2182,blat.proc3829871.chain_2185	7
scaffold_18	ends_in_intron	5985391	5985391	+	asmbl_20677,asmbl_20678	none	STRG.21346.1,STRG.21346.3	2	blat.proc3829881.chain_2204,blat.proc3829881.chain_2205,blat.proc3829881.chain_2206,blat.proc3829881.chain_2207,blat.proc3829881.chain_2208,blat.proc3829881.chain_2209,blat.proc3829881.chain_2211,blat.proc3829881.chain_2212	8
scaffold_27	ends_in_intron	2049959	2049959	+	asmbl_36025	none	blat.proc3829885.chain_1706	1	STRG.28673.1,blat.proc3829885.chain_1707,blat.proc3829885.chain_1708	3
scaffold_1	alternate_exon	5135646	5136100	+	asmbl_1697	none	STRG.317.1	1	STRG.317.2,blat.proc3829871.chain_380,blat.proc3829871.chain_381	3
scaffold_8	retained_intron	16397567	16398401	-	asmbl_53390,asmbl_53395,asmbl_53396,asmbl_53397,asmbl_53398,asmbl_53399	none	STRG.10619.1,blat.proc3829891.chain_2684,blat.proc3829891.chain_2685,blat.proc3829891.chain_2686,blat.proc3829891.chain_2688,blat.proc3829891.chain_2689,blat.proc3829891.chain_2691	7	STRG.10619.2,blat.proc3829891.chain_2687	2
scaffold_24	ends_in_intron	6725096	6725096	-	asmbl_32960	none	blat.proc3829901.chain_23	1	STRG.26704.1,STRG.26704.2,blat.proc3829901.chain_21,blat.proc3829901.chain_22,blat.proc3829901.chain_25	5
scaffold_25	alternate_exon	6525826	6525866	-	asmbl_34339	none	blat.proc3829901.chain_847	1	blat.proc3829901.chain_848	1
scaffold_11	alt_acceptor	9832312	9832313	+	asmbl_5866,asmbl_5867,asmbl_5868,asmbl_5871,asmbl_5872,asmbl_5875	none	STRG.13996.1,STRG.13996.2,STRG.13996.3,STRG.13996.4,Trinity_GG_7729_c0_g1_i2,blat.proc3829877.chain_2505,blat.proc3829877.chain_2510,blat.proc3829877.chain_2512,blat.proc3829877.chain_2514	9	Trinity_GG_7729_c0_g1_i7,blat.proc3829877.chain_2507	2
scaffold_5	retained_intron	8792001	8792555	+	asmbl_44239	none	blat.proc3829873.chain_2347	1	STRG.6209.1,STRG.6209.2,blat.proc3829873.chain_2346,blat.proc3829873.chain_2349,blat.proc3829873.chain_2350	5
scaffold_2	retained_exon	17613833	17613909	+	asmbl_25220	none	STRG.2650.2,blat.proc3829871.chain_2856	2	STRG.2650.1,blat.proc3829871.chain_2855	2
scaffold_14	starts_in_intron	10782722	10782722	+	asmbl_12328	none	Trinity_GG_9585_c0_g1_i3,blat.proc3829879.chain_2133	2	STRG.17414.1,blat.proc3829879.chain_2132,blat.proc3829879.chain_2134	3
scaffold_17	starts_in_intron	8223857	8223857	+	asmbl_18080	none	Trinity_GG_11183_c0_g1_i2,blat.proc3829881.chain_1197	2	STRG.20435.1,STRG.20435.3,blat.proc3829881.chain_1196,blat.proc3829881.chain_1198,blat.proc3829881.chain_1203	5
scaffold_2	retained_exon	14276258	14276384	+	asmbl_24926,asmbl_24933	none	STRG.2425.1,blat.proc3829871.chain_2544,blat.proc3829871.chain_2547	3	STRG.2425.2	1
scaffold_21	spliced_intron	4948171	4948378	+	asmbl_28561	none	STRG.24028.2,blat.proc3829883.chain_1174	2	STRG.24028.1,blat.proc3829883.chain_1173	2
scaffold_24	skipped_exon	6783805	6784704	-	asmbl_32962	none	STRG.26713.2	1	STRG.26713.1,STRG.26713.4	2
scaffold_7	spliced_intron	7493241	7494424	-	asmbl_49756	none	STRG.8995.2	1	STRG.8995.1,blat.proc3829891.chain_1265	2
scaffold_646	spliced_intron	4845	4952	-	asmbl_49432	none	STRG.30390.1,blat.proc3829901.chain_3441	2	STRG.30390.2,blat.proc3829901.chain_3440	2
scaffold_8	starts_in_intron	15687283	15687283	-	asmbl_53342	none	Trinity_GG_22882_c0_g1_i1,blat.proc3829891.chain_2710	2	STRG.10564.1,STRG.10564.2,Trinity_GG_22882_c0_g1_i2,Trinity_GG_22882_c0_g1_i3,blat.proc3829891.chain_2709,blat.proc3829891.chain_2711	6
scaffold_25	retained_exon	4576040	4576177	+	asmbl_33515,asmbl_33516,asmbl_33519,asmbl_33520	none	STRG.27377.1,STRG.27377.2,Trinity_GG_15111_c0_g1_i12,Trinity_GG_15111_c0_g1_i9,blat.proc3829885.chain_437,blat.proc3829885.chain_440	6	STRG.27377.3,Trinity_GG_15111_c0_g1_i3,Trinity_GG_15111_c0_g1_i4,blat.proc3829885.chain_438,blat.proc3829885.chain_439	5
scaffold_24	alternate_exon	6776262	6776333	+	asmbl_32347	none	STRG.26705.1,blat.proc3829883.chain_3618	2	STRG.26705.2	1
scaffold_17	starts_in_intron	11959741	11959741	-	asmbl_19350	none	STRG.20711.1	1	STRG.20711.2,STRG.20711.3,blat.proc3829897.chain_1669,blat.proc3829897.chain_1671	4
scaffold_28	alt_acceptor	8414891	8414892	+	asmbl_38439,asmbl_38440	none	STRG.29890.1,Trinity_GG_16556_c0_g1_i1,Trinity_GG_16556_c0_g1_i2,blat.proc3829885.chain_2985,blat.proc3829885.chain_2986	5	STRG.29890.2	1
scaffold_18	spliced_intron	11328837	11329142	+	asmbl_20963,asmbl_20965,asmbl_20966	none	STRG.21666.1,STRG.21666.2,blat.proc3829881.chain_2648,blat.proc3829881.chain_2651	4	blat.proc3829881.chain_2655	1
scaffold_2	alternate_exon	18991540	18996419	-	asmbl_23858	none	STRG.2780.1	1	STRG.2780.2	1
scaffold_17	retained_intron	5124487	5126010	-	asmbl_18957	none	STRG.20228.1,blat.proc3829897.chain_1198,blat.proc3829897.chain_1199	3	blat.proc3829897.chain_1202	1
scaffold_18	spliced_intron	2394186	2394398	-	asmbl_19761	none	STRG.21108.3,Trinity_GG_28850_c0_g1_i3,blat.proc3829897.chain_2017	3	STRG.21108.2,Trinity_GG_28850_c0_g1_i4,blat.proc3829897.chain_2019,blat.proc3829897.chain_2020	4
scaffold_18	alternate_exon	6777317	6777433	-	asmbl_19952	none	STRG.21372.3,blat.proc3829897.chain_2244	2	STRG.21372.2	1
scaffold_6	alt_donor	18020051	18020052	+	asmbl_47741	none	STRG.8481.2,blat.proc3829875.chain_786	2	STRG.8481.3,blat.proc3829875.chain_787	2
scaffold_7	retained_intron	9708727	9708817	-	asmbl_49868	none	STRG.9148.2	1	STRG.9148.1,blat.proc3829891.chain_1338	2
scaffold_5	retained_intron	9086221	9086396	+	asmbl_44260,asmbl_44261	none	Trinity_GG_3425_c0_g1_i2,Trinity_GG_3425_c0_g1_i4,blat.proc3829873.chain_2420,blat.proc3829873.chain_2425	4	STRG.6237.1,STRG.6237.2,STRG.6237.3,STRG.6237.4,STRG.6237.5,blat.proc3829873.chain_2418,blat.proc3829873.chain_2419,blat.proc3829873.chain_2421,blat.proc3829873.chain_2422,blat.proc3829873.chain_2423,blat.proc3829873.chain_2424,blat.proc3829873.chain_2426	12
scaffold_8	ends_in_intron	3344352	3344352	+	asmbl_51748	none	STRG.9829.1	1	STRG.9829.2,blat.proc3829875.chain_2318	2
scaffold_18	spliced_intron	4724166	4724270	-	asmbl_19860	none	STRG.21251.1,blat.proc3829897.chain_2124	2	Trinity_GG_28910_c0_g1_i1,blat.proc3829897.chain_2123	2
scaffold_27	retained_exon	973582	975044	+	asmbl_35932	none	STRG.28576.2	1	Trinity_GG_15816_c0_g1_i2,blat.proc3829885.chain_1619	2
scaffold_20	ends_in_intron	3996823	3996823	-	asmbl_26637	none	Trinity_GG_29890_c0_g1_i1,blat.proc3829899.chain_98	2	STRG.23081.1,blat.proc3829899.chain_99	2
scaffold_22	ends_in_intron	4997859	4997859	+	asmbl_29347	none	STRG.24899.2,blat.proc3829883.chain_1963	2	STRG.24899.1,blat.proc3829883.chain_1962	2
scaffold_22	alt_acceptor	485566	485567	+	asmbl_29150	none	STRG.24679.2	1	STRG.24679.1,STRG.24679.3,Trinity_GG_13642_c0_g1_i3,blat.proc3829883.chain_1725,blat.proc3829883.chain_1726	5
scaffold_12	spliced_intron	4984361	4984577	+	asmbl_8585,asmbl_8586,asmbl_8590,asmbl_8591	none	STRG.14656.1,STRG.14656.2,blat.proc3829877.chain_3080,blat.proc3829877.chain_3082,blat.proc3829877.chain_3086	5	blat.proc3829877.chain_3083	1
scaffold_1	retained_exon	22371610	22371747	+	asmbl_2679	none	STRG.1490.1	1	STRG.1490.2,STRG.1490.4	2
scaffold_5	spliced_intron	5045141	5045424	+	asmbl_43994	none	STRG.5951.2,blat.proc3829873.chain_2112	2	Trinity_GG_3261_c0_g2_i1,blat.proc3829873.chain_2111	2
scaffold_18	alt_donor	7199463	7199464	+	asmbl_20750	none	STRG.21415.4	1	STRG.21415.1,Trinity_GG_11823_c0_g1_i1,blat.proc3829881.chain_2375	3
scaffold_5	starts_in_intron	3015956	3015956	-	asmbl_45292	none	blat.proc3829889.chain_1896	1	STRG.5797.1,blat.proc3829889.chain_1895	2
scaffold_15	spliced_intron	15188738	15189525	+	asmbl_14692	none	STRG.18906.2	1	blat.proc3829879.chain_3472,blat.proc3829879.chain_3478,blat.proc3829879.chain_3480,blat.proc3829879.chain_3485,blat.proc3829879.chain_3486	5
scaffold_15	retained_intron	9289598	9289814	+	asmbl_14330	none	blat.proc3829879.chain_3091	1	STRG.18450.1,STRG.18450.2,blat.proc3829879.chain_3090	3
scaffold_14	retained_intron	11139409	11139486	-	asmbl_13433	none	blat.proc3829895.chain_2148	1	STRG.17433.1,blat.proc3829895.chain_2149	2
scaffold_7	alt_acceptor	286430	286431	+	asmbl_50429,asmbl_50431,asmbl_50432	none	STRG.8593.1,Trinity_GG_4731_c0_g1_i3,Trinity_GG_4731_c0_g1_i6	3	STRG.8593.2	1
scaffold_28	alternate_exon	3541336	3541406	-	asmbl_37483,asmbl_37484	none	STRG.29547.1,STRG.29547.2,blat.proc3829901.chain_2643,blat.proc3829901.chain_2644	4	STRG.29547.3	1
scaffold_3	retained_intron	15781656	15781744	-	asmbl_39400	none	blat.proc3829887.chain_3690	1	STRG.3856.1,STRG.3856.2,blat.proc3829887.chain_3691	3
scaffold_2	alternate_exon	798691	801955	+	asmbl_24127	none	Trinity_GG_875_c1_g1_i1,blat.proc3829871.chain_1575,blat.proc3829871.chain_1576	3	STRG.1558.2	1
scaffold_16	retained_intron	433381	433451	-	asmbl_16052,asmbl_16053	none	blat.proc3829897.chain_25,blat.proc3829897.chain_26	2	STRG.19039.1,blat.proc3829897.chain_17,blat.proc3829897.chain_18,blat.proc3829897.chain_19,blat.proc3829897.chain_20,blat.proc3829897.chain_21,blat.proc3829897.chain_23,blat.proc3829897.chain_24	8
scaffold_6	retained_intron	13657677	13658201	-	asmbl_48864	none	STRG.8100.1	1	STRG.8100.3	1
scaffold_2	retained_intron	13330650	13331324	+	asmbl_24863,asmbl_24866	none	STRG.2342.2,STRG.2342.3,blat.proc3829871.chain_2471	3	STRG.2342.1,STRG.2342.5,blat.proc3829871.chain_2472,blat.proc3829871.chain_2473	4
scaffold_10	alt_acceptor	7276360	7276361	+	asmbl_4550,asmbl_4551,asmbl_4553,asmbl_4556	none	STRG.12531.1,STRG.12531.2,blat.proc3829877.chain_1100,blat.proc3829877.chain_1103,blat.proc3829877.chain_1104,blat.proc3829877.chain_1105	6	STRG.12531.3,blat.proc3829877.chain_1101	2
scaffold_18	alt_acceptor	2156611	2156612	-	asmbl_19749,asmbl_19750	none	STRG.21103.1,blat.proc3829897.chain_1956,blat.proc3829897.chain_1957	3	STRG.21103.2,blat.proc3829897.chain_1958	2
scaffold_11	spliced_intron	8600562	8601135	+	asmbl_5768,asmbl_5770,asmbl_5771,asmbl_5774	none	STRG.13863.1,STRG.13863.2,STRG.13863.3,Trinity_GG_7654_c0_g1_i1,Trinity_GG_7654_c0_g1_i2,blat.proc3829877.chain_2376,blat.proc3829877.chain_2378,blat.proc3829877.chain_2379	8	Trinity_GG_7654_c0_g1_i7,blat.proc3829877.chain_2375	2
scaffold_1	alt_acceptor	12450375	12450376	+	asmbl_2205,asmbl_2208	none	STRG.856.3,Trinity_GG_494_c0_g1_i3,Trinity_GG_494_c0_g1_i6,blat.proc3829871.chain_882,blat.proc3829871.chain_887	5	STRG.856.1,Trinity_GG_494_c0_g1_i8,blat.proc3829871.chain_881,blat.proc3829871.chain_888	4
scaffold_16	alt_acceptor	814751	814752	-	asmbl_16084,asmbl_16085	none	STRG.19048.1,STRG.19048.2,blat.proc3829895.chain_3750,blat.proc3829897.chain_1	4	STRG.19048.3	1
scaffold_4	retained_intron	17580414	17580544	+	asmbl_43403	none	STRG.5347.4	1	STRG.5347.1,STRG.5347.3,STRG.5347.5	3
scaffold_8	starts_in_intron	15704057	15704057	-	asmbl_53346	none	blat.proc3829891.chain_2714	1	STRG.10568.1,blat.proc3829891.chain_2713	2
scaffold_7	retained_intron	12614841	12615086	+	asmbl_51157	none	STRG.9361.2,Trinity_GG_5165_c0_g1_i3,blat.proc3829875.chain_1765	3	STRG.9361.1,Trinity_GG_5165_c0_g1_i1,Trinity_GG_5165_c0_g1_i2,blat.proc3829875.chain_1764,blat.proc3829875.chain_1766	5
scaffold_22	starts_in_intron	9177823	9177823	-	asmbl_30290	none	blat.proc3829899.chain_2278	1	STRG.25240.1,blat.proc3829899.chain_2279	2
scaffold_1	starts_in_intron	11130981	11130981	-	asmbl_619	none	blat.proc3829887.chain_569	1	STRG.732.1,blat.proc3829887.chain_567,blat.proc3829887.chain_568	3
scaffold_4	skipped_exon	10471942	10472461	+	asmbl_43000	none	STRG.4802.2	1	STRG.4802.1,blat.proc3829873.chain_1098	2
scaffold_18	alt_acceptor	7629659	7629660	-	asmbl_20000,asmbl_20001,asmbl_20002	none	STRG.21453.4,Trinity_GG_29021_c0_g1_i10,Trinity_GG_29021_c0_g1_i8,blat.proc3829897.chain_2311,blat.proc3829897.chain_2313	5	STRG.21453.2,STRG.21453.3,blat.proc3829897.chain_2310,blat.proc3829897.chain_2312,blat.proc3829897.chain_2314	5
scaffold_8	retained_intron	11852296	11852549	+	asmbl_52268	none	Trinity_GG_5824_c3_g1_i1,blat.proc3829875.chain_2984	2	STRG.10382.2,STRG.10382.3,STRG.10382.4,blat.proc3829875.chain_2966,blat.proc3829875.chain_2967,blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970,blat.proc3829875.chain_2971,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2975,blat.proc3829875.chain_2976,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978,blat.proc3829875.chain_2979,blat.proc3829875.chain_2980,blat.proc3829875.chain_2981	18
scaffold_11	ends_in_intron	16659384	16659384	+	asmbl_6155	none	STRG.14354.1,blat.proc3829877.chain_2792	2	STRG.14354.2,Trinity_GG_7886_c2_g1_i1	2
scaffold_17	spliced_intron	10050378	10050476	+	asmbl_18285	none	STRG.20609.3	1	STRG.20609.2,Trinity_GG_11293_c0_g1_i5,blat.proc3829881.chain_1429,blat.proc3829881.chain_1430,blat.proc3829881.chain_1432	5
scaffold_22	alternate_exon	11596511	11596900	-	asmbl_30456	none	blat.proc3829899.chain_2585	1	blat.proc3829899.chain_2586	1
scaffold_2	retained_intron	7134503	7134669	+	asmbl_24562	none	STRG.2047.2	1	STRG.2047.3,blat.proc3829871.chain_2122	2
scaffold_26	alt_donor	9846960	9846961	+	asmbl_35804,asmbl_35810,asmbl_35814,asmbl_35815	none	STRG.28526.1,STRG.28526.3,blat.proc3829885.chain_1561,blat.proc3829885.chain_1567	4	STRG.28526.2,STRG.28526.5,blat.proc3829885.chain_1556,blat.proc3829885.chain_1557,blat.proc3829885.chain_1558,blat.proc3829885.chain_1559,blat.proc3829885.chain_1560,blat.proc3829885.chain_1562,blat.proc3829885.chain_1563,blat.proc3829885.chain_1564,blat.proc3829885.chain_1565,blat.proc3829885.chain_1566	12
scaffold_4	ends_in_intron	6940347	6940347	+	asmbl_42768	none	blat.proc3829873.chain_906	1	STRG.4536.1,blat.proc3829873.chain_899,blat.proc3829873.chain_903,blat.proc3829873.chain_905	4
scaffold_14	alt_acceptor	11573664	11573665	-	asmbl_13487	none	STRG.17490.4	1	STRG.17490.1,blat.proc3829895.chain_2172,blat.proc3829895.chain_2179	3
scaffold_22	retained_exon	4239310	4240364	-	asmbl_29977,asmbl_29978,asmbl_29985	none	STRG.24838.1,STRG.24838.4,blat.proc3829899.chain_1981,blat.proc3829899.chain_1983	4	STRG.24838.2,Trinity_GG_30899_c1_g1_i5,blat.proc3829899.chain_1982	3
scaffold_11	retained_intron	1305168	1305286	-	asmbl_6401	none	Trinity_GG_24473_c0_g1_i2,blat.proc3829893.chain_1779	2	STRG.13304.1,blat.proc3829893.chain_1781	2
scaffold_25	starts_in_intron	3905863	3905863	+	asmbl_33468	none	Trinity_GG_15022_c0_g1_i2,blat.proc3829885.chain_281	2	STRG.27319.1	1
scaffold_14	starts_in_intron	15308143	15308143	+	asmbl_12576	none	STRG.17745.5	1	STRG.17745.4	1
scaffold_3	alt_acceptor	7917839	7917840	-	asmbl_38951	none	STRG.3375.1	1	STRG.3375.2,STRG.3375.3,STRG.3375.4,STRG.3375.5,blat.proc3829887.chain_3073,blat.proc3829887.chain_3074	6
scaffold_17	ends_in_intron	2277133	2277133	-	asmbl_18787	none	blat.proc3829897.chain_941	1	STRG.20005.1,STRG.20005.2,blat.proc3829897.chain_940,blat.proc3829897.chain_943	4
scaffold_20	starts_in_intron	8023896	8023896	-	asmbl_26881	none	blat.proc3829899.chain_403	1	STRG.23340.1,blat.proc3829899.chain_404	2
scaffold_21	starts_in_intron	8190004	8190004	+	asmbl_28814	none	STRG.24340.2	1	STRG.24340.1	1
scaffold_16	alt_donor	10485580	10485581	+	asmbl_17346	none	STRG.19606.2	1	STRG.19606.1,blat.proc3829881.chain_464	2
scaffold_3	alternate_exon	6820704	6821998	+	asmbl_40092	none	STRG.3304.2	1	blat.proc3829871.chain_3443	1
scaffold_6	alt_donor	13229076	13229077	+	asmbl_47441,asmbl_47445,asmbl_47449	none	STRG.8077.1,STRG.8077.4,blat.proc3829875.chain_499,blat.proc3829875.chain_504	4	STRG.8077.5,STRG.8077.6,blat.proc3829875.chain_505	3
scaffold_3	spliced_intron	19884864	19885175	-	asmbl_39615,asmbl_39616	none	STRG.4100.1,Trinity_GG_19264_c1_g1_i1,Trinity_GG_19264_c1_g1_i7,blat.proc3829889.chain_140,blat.proc3829889.chain_141	5	Trinity_GG_19264_c1_g1_i6,blat.proc3829889.chain_139,blat.proc3829889.chain_144	3
scaffold_14	ends_in_intron	6647338	6647338	-	asmbl_13130	none	blat.proc3829895.chain_1785	1	STRG.17095.1,STRG.17095.3	2
scaffold_18	spliced_intron	11328359	11328484	+	asmbl_20963,asmbl_20965,asmbl_20966	none	STRG.21666.1,STRG.21666.2,blat.proc3829881.chain_2648,blat.proc3829881.chain_2651	4	Trinity_GG_11992_c0_g1_i5,blat.proc3829881.chain_2654	2
scaffold_22	alt_donor	6064504	6064505	+	asmbl_29385	none	blat.proc3829883.chain_2021	1	blat.proc3829883.chain_2020	1
scaffold_12	alternate_exon	4983369	4983707	+	asmbl_8587	none	blat.proc3829877.chain_3084	1	STRG.14656.1,blat.proc3829877.chain_3082,blat.proc3829877.chain_3086	3
scaffold_13	starts_in_intron	1218951	1218951	+	asmbl_10513	none	blat.proc3829879.chain_220	1	STRG.15477.1,blat.proc3829879.chain_222	2
scaffold_14	spliced_intron	15565493	15565735	+	asmbl_12607	none	STRG.17784.2	1	STRG.17784.1	1
scaffold_15	starts_in_intron	4490636	4490636	+	asmbl_14088	none	blat.proc3829879.chain_2752	1	STRG.18165.1,STRG.18165.2,blat.proc3829879.chain_2747,blat.proc3829879.chain_2748,blat.proc3829879.chain_2749,blat.proc3829879.chain_2750	6
scaffold_26	starts_in_intron	6349600	6349600	-	asmbl_34951	none	blat.proc3829901.chain_1402	1	STRG.28315.1,STRG.28315.2,STRG.28315.3,STRG.28315.4,STRG.28315.5,blat.proc3829901.chain_1401,blat.proc3829901.chain_1403,blat.proc3829901.chain_1404,blat.proc3829901.chain_1406	9
scaffold_22	alt_donor	8620836	8620837	+	asmbl_29571	none	STRG.25196.1	1	Trinity_GG_13952_c0_g1_i1	1
scaffold_19	spliced_intron	8232992	8233161	+	asmbl_22307	none	STRG.22270.1,blat.proc3829881.chain_3179	2	blat.proc3829881.chain_3180	1
scaffold_23	ends_in_intron	10202070	10202070	-	asmbl_31849	none	Trinity_GG_31625_c0_g1_i1,blat.proc3829899.chain_3228	2	STRG.26215.1,STRG.26215.2,STRG.26215.3,blat.proc3829899.chain_3229	4
scaffold_2	alternate_exon	6901551	6903505	+	asmbl_24530,asmbl_24545	none	STRG.2036.6,Trinity_GG_1103_c0_g1_i2,blat.proc3829871.chain_2020,blat.proc3829871.chain_2022	4	STRG.2036.4	1
scaffold_2	skipped_exon	2986713	2987932	+	asmbl_24288	none	STRG.1732.2,Trinity_GG_993_c1_g1_i2,blat.proc3829871.chain_1818	3	STRG.1732.1,Trinity_GG_993_c1_g1_i1,blat.proc3829871.chain_1819	3
scaffold_15	retained_exon	12391006	12391047	-	asmbl_15588	none	STRG.18686.4	1	STRG.18686.2,STRG.18686.3	2
scaffold_5	ends_in_intron	15315843	15315843	-	asmbl_46045	none	Trinity_GG_20791_c0_g1_i2,blat.proc3829889.chain_2784	2	STRG.6714.1,blat.proc3829889.chain_2785	2
scaffold_27	alt_acceptor	5927546	5927547	-	asmbl_36998	none	STRG.28980.1,blat.proc3829901.chain_2165	2	STRG.28980.2,blat.proc3829901.chain_2163,blat.proc3829901.chain_2166	3
scaffold_7	alternate_exon	11920864	11920930	-	asmbl_49988	none	STRG.9288.3,blat.proc3829891.chain_1548	2	STRG.9288.2,Trinity_GG_22258_c0_g1_i3,blat.proc3829891.chain_1549	3
scaffold_16	starts_in_intron	12642776	12642776	-	asmbl_16576	none	blat.proc3829897.chain_654	1	STRG.19744.1,blat.proc3829897.chain_655	2
scaffold_11	alt_donor	4683688	4683689	-	asmbl_6593	none	blat.proc3829893.chain_2030	1	STRG.13547.1,STRG.13547.2,STRG.13547.3,STRG.13547.5,blat.proc3829893.chain_2029,blat.proc3829893.chain_2031,blat.proc3829893.chain_2032	7
scaffold_19	alternate_exon	11724574	11724743	-	asmbl_21646	none	blat.proc3829897.chain_3176	1	STRG.22489.2,blat.proc3829897.chain_3177	2
scaffold_13	starts_in_intron	517907	517907	+	asmbl_10459	none	blat.proc3829879.chain_111	1	STRG.15434.2,STRG.15434.3,STRG.15434.4,STRG.15434.5,Trinity_GG_8491_c0_g1_i1,Trinity_GG_8491_c0_g1_i2,blat.proc3829879.chain_110,blat.proc3829879.chain_113,blat.proc3829879.chain_115,blat.proc3829879.chain_116	10
scaffold_1	alternate_exon	8761959	8762005	-	asmbl_505	none	STRG.579.2	1	STRG.579.1,blat.proc3829887.chain_485	2
scaffold_18	retained_intron	2779711	2779799	-	asmbl_19778	none	STRG.21128.1,blat.proc3829897.chain_2036	2	STRG.21128.2,blat.proc3829897.chain_2037	2
scaffold_6	starts_in_intron	9180811	9180811	-	asmbl_48547	none	blat.proc3829891.chain_52	1	STRG.7790.1,blat.proc3829891.chain_53	2
scaffold_24	alternate_exon	9953244	9957896	-	asmbl_33146,asmbl_33147,asmbl_33148,asmbl_33151,asmbl_33152,asmbl_33153	none	STRG.26947.1,STRG.26947.3,STRG.26947.4,STRG.26947.8,blat.proc3829901.chain_248,blat.proc3829901.chain_249,blat.proc3829901.chain_250	7	Trinity_GG_32087_c0_g1_i5	1
scaffold_15	alt_donor	2990687	2990688	-	asmbl_15076	none	STRG.18069.3,blat.proc3829895.chain_2807	2	STRG.18069.1,blat.proc3829895.chain_2805	2
scaffold_1	ends_in_intron	9970669	9970669	-	asmbl_581	none	Trinity_GG_17380_c0_g1_i1,blat.proc3829887.chain_588	2	STRG.663.1,blat.proc3829887.chain_587	2
scaffold_6	starts_in_intron	6146697	6146697	+	asmbl_46941	none	Trinity_GG_4080_c0_g1_i2,blat.proc3829873.chain_3568	2	STRG.7565.1,blat.proc3829873.chain_3567	2
scaffold_7	retained_intron	7789092	7789283	-	asmbl_49788,asmbl_49789	none	Trinity_GG_22117_c0_g1_i2,Trinity_GG_22117_c0_g1_i5,Trinity_GG_22117_c0_g1_i8,blat.proc3829891.chain_1293,blat.proc3829891.chain_1296,blat.proc3829891.chain_1297	6	STRG.9024.1,STRG.9024.2,Trinity_GG_22117_c0_g1_i4,Trinity_GG_22117_c0_g1_i7,blat.proc3829891.chain_1294,blat.proc3829891.chain_1295	6
scaffold_6	spliced_intron	17799090	17799282	-	asmbl_49133	none	STRG.8455.2,blat.proc3829891.chain_711	2	blat.proc3829891.chain_713	1
scaffold_1	alt_donor	12585455	12585456	+	asmbl_2222	none	STRG.874.2	1	STRG.874.1	1
scaffold_5	retained_intron	12269864	12269944	+	asmbl_44462	none	STRG.6455.2	1	STRG.6455.1,blat.proc3829873.chain_2621	2
scaffold_11	retained_intron	8716691	8716938	-	asmbl_6854	none	Trinity_GG_24779_c0_g1_i1,blat.proc3829893.chain_2330	2	STRG.13887.1,blat.proc3829893.chain_2332,blat.proc3829893.chain_2333	3
scaffold_5	alt_acceptor	18989360	18989361	+	asmbl_44952	none	STRG.7006.2	1	STRG.7006.1,Trinity_GG_3849_c0_g1_i1,blat.proc3829873.chain_3152	3
scaffold_15	starts_in_intron	11797058	11797058	-	asmbl_15548	none	STRG.18617.2,blat.proc3829895.chain_3390	2	STRG.18617.1,Trinity_GG_27477_c0_g1_i2,blat.proc3829895.chain_3391	3
scaffold_6	retained_intron	8173665	8173844	-	asmbl_48477	none	Trinity_GG_21366_c0_g1_i5,blat.proc3829889.chain_3714	2	STRG.7691.1,STRG.7691.2,Trinity_GG_21366_c0_g1_i14,Trinity_GG_21366_c0_g1_i3,blat.proc3829889.chain_3713,blat.proc3829889.chain_3716,blat.proc3829889.chain_3717,blat.proc3829889.chain_3719,blat.proc3829889.chain_3720,blat.proc3829889.chain_3721,blat.proc3829889.chain_3722,blat.proc3829889.chain_3724	12
scaffold_2	alternate_exon	17977489	17977652	+	asmbl_25247	none	STRG.2688.2,blat.proc3829871.chain_2904	2	STRG.2688.1	1
scaffold_15	alternate_exon	3403060	3403316	-	asmbl_15106	none	blat.proc3829895.chain_2869	1	STRG.18107.1,STRG.18107.3,STRG.18107.4,blat.proc3829895.chain_2867	4
scaffold_8	starts_in_intron	9466484	9466484	-	asmbl_53037	none	Trinity_GG_22724_c0_g1_i7	1	STRG.10197.1,Trinity_GG_22724_c0_g1_i12,blat.proc3829891.chain_2400,blat.proc3829891.chain_2401,blat.proc3829891.chain_2403,blat.proc3829891.chain_2405,blat.proc3829891.chain_2406,blat.proc3829891.chain_2407,blat.proc3829891.chain_2408	9
scaffold_12	alt_donor	15426942	15426943	-	asmbl_8220	none	blat.proc3829895.chain_70	1	STRG.15330.1,blat.proc3829895.chain_68	2
scaffold_11	alternate_exon	1158833	1158920	+	asmbl_5286,asmbl_5287	none	STRG.13299.1,Trinity_GG_7310_c0_g1_i1,blat.proc3829877.chain_1802,blat.proc3829877.chain_1804	4	STRG.13299.2,STRG.13299.3	2
scaffold_25	alternate_exon	4589367	4589798	-	asmbl_34195,asmbl_34197	none	STRG.27378.1,STRG.27378.2,blat.proc3829901.chain_650	3	STRG.27378.3,blat.proc3829901.chain_651	2
scaffold_26	alternate_exon	3980703	3981103	-	asmbl_34797	none	STRG.28074.2,Trinity_GG_32744_c1_g1_i1,blat.proc3829901.chain_1317	3	STRG.28074.1,blat.proc3829901.chain_1316	2
scaffold_14	alt_acceptor	2840973	2840974	+	asmbl_11857,asmbl_11859	none	STRG.16867.1,STRG.16867.3,Trinity_GG_9281_c0_g1_i1,blat.proc3829879.chain_1585	4	STRG.16867.2	1
scaffold_18	alt_acceptor	180051	180052	+	asmbl_20296,asmbl_20297	none	STRG.20962.1,blat.proc3829881.chain_1817,blat.proc3829881.chain_1820	3	STRG.20962.4,blat.proc3829881.chain_1819	2
scaffold_15	alt_acceptor	15189524	15189525	+	asmbl_14681,asmbl_14690,asmbl_14692	none	STRG.18906.2,blat.proc3829879.chain_3473,blat.proc3829879.chain_3487	3	blat.proc3829879.chain_3477	1
scaffold_3	spliced_intron	17144430	17144593	+	asmbl_40617,asmbl_40619	none	STRG.3949.1,STRG.3949.2,blat.proc3829873.chain_352	3	STRG.3949.3,Trinity_GG_2219_c0_g1_i2	2
scaffold_8	retained_intron	4784352	4784444	-	asmbl_52789	none	blat.proc3829891.chain_2110	1	STRG.9933.1,blat.proc3829891.chain_2111	2
scaffold_12	alt_acceptor	7351731	7351732	+	asmbl_8711	none	STRG.14801.1,blat.proc3829877.chain_3300	2	STRG.14801.2	1
scaffold_6	retained_intron	7935430	7936138	-	asmbl_48446,asmbl_48450,asmbl_48451	none	STRG.7666.2,blat.proc3829889.chain_3702,blat.proc3829889.chain_3706	3	STRG.7666.1,STRG.7666.3,STRG.7666.4,blat.proc3829889.chain_3701,blat.proc3829889.chain_3703,blat.proc3829889.chain_3704,blat.proc3829889.chain_3705	7
scaffold_9	spliced_intron	11777566	11777749	+	asmbl_54361	none	STRG.11478.2	1	Trinity_GG_6374_c0_g1_i1,blat.proc3829877.chain_212	2
scaffold_11	alt_donor	17086460	17086461	-	asmbl_7224,asmbl_7229	none	STRG.14362.1,STRG.14362.5	2	STRG.14362.4,blat.proc3829893.chain_2767	2
scaffold_2	ends_in_intron	2882083	2882083	-	asmbl_22961,asmbl_22962	none	blat.proc3829887.chain_1495,blat.proc3829887.chain_1499	2	STRG.1733.1,STRG.1733.2,STRG.1733.3,STRG.1733.4,blat.proc3829887.chain_1492,blat.proc3829887.chain_1493,blat.proc3829887.chain_1494,blat.proc3829887.chain_1496,blat.proc3829887.chain_1497,blat.proc3829887.chain_1498,blat.proc3829887.chain_1500	11
scaffold_15	alternate_exon	3398055	3398342	-	asmbl_15107,asmbl_15108	none	STRG.18107.3,STRG.18107.4	2	STRG.18107.1,blat.proc3829895.chain_2867,blat.proc3829895.chain_2869	3
scaffold_16	spliced_intron	6135997	6136065	+	asmbl_17067,asmbl_17068	none	STRG.19335.1,blat.proc3829881.chain_198,blat.proc3829881.chain_199	3	STRG.19335.2,blat.proc3829881.chain_197	2
scaffold_25	retained_intron	3186833	3186999	-	asmbl_34099,asmbl_34102	none	STRG.27241.2,STRG.27241.3,blat.proc3829901.chain_565	3	STRG.27241.1,blat.proc3829901.chain_566,blat.proc3829901.chain_567	3
scaffold_20	starts_in_intron	1435734	1435734	-	asmbl_26495	none	Trinity_GG_29758_c0_g1_i4,blat.proc3829897.chain_3621	2	STRG.22849.1,STRG.22849.2	2
scaffold_15	spliced_intron	11941297	11941598	-	asmbl_15556,asmbl_15557	none	STRG.18626.1,blat.proc3829895.chain_3336	2	blat.proc3829895.chain_3338	1
scaffold_5	alt_donor	13222614	13222615	-	asmbl_45912	none	STRG.6552.2	1	STRG.6552.1,blat.proc3829889.chain_2628	2
scaffold_8	retained_intron	16397415	16398401	-	asmbl_53390,asmbl_53395,asmbl_53396,asmbl_53397,asmbl_53398,asmbl_53399	none	STRG.10619.1,blat.proc3829891.chain_2684,blat.proc3829891.chain_2685,blat.proc3829891.chain_2686,blat.proc3829891.chain_2688,blat.proc3829891.chain_2689,blat.proc3829891.chain_2691	7	blat.proc3829891.chain_2683	1
scaffold_27	alternate_exon	5412422	5412693	-	asmbl_36961	none	STRG.28934.2	1	STRG.28934.1	1
scaffold_10	ends_in_intron	1174502	1174502	+	asmbl_4198,asmbl_4199	none	STRG.12000.3,STRG.12000.4,blat.proc3829877.chain_709	3	STRG.12000.1,STRG.12000.2,blat.proc3829877.chain_708,blat.proc3829877.chain_710,blat.proc3829877.chain_711	5
scaffold_9	retained_intron	11551049	11551499	-	asmbl_55259,asmbl_55260	none	STRG.11459.2,blat.proc3829891.chain_3585,blat.proc3829891.chain_3587	3	STRG.11459.1,blat.proc3829891.chain_3588,blat.proc3829891.chain_3589	3
scaffold_14	alt_acceptor	399237	399238	+	asmbl_11721,asmbl_11723,asmbl_11726,asmbl_11731	none	STRG.16722.1,blat.proc3829879.chain_1464,blat.proc3829879.chain_1470,blat.proc3829879.chain_1473	4	STRG.16722.2,STRG.16722.4,STRG.16722.5,STRG.16722.6,blat.proc3829879.chain_1463	5
scaffold_11	spliced_intron	15653766	15653915	-	asmbl_7176,asmbl_7177,asmbl_7178,asmbl_7179,asmbl_7181,asmbl_7182	none	STRG.14297.1,STRG.14297.2,blat.proc3829893.chain_2729,blat.proc3829893.chain_2731,blat.proc3829893.chain_2732,blat.proc3829893.chain_2733,blat.proc3829893.chain_2736,blat.proc3829893.chain_2737	8	blat.proc3829893.chain_2730	1
scaffold_18	alt_acceptor	10132496	10132497	+	asmbl_20926,asmbl_20928	none	STRG.21596.2,blat.proc3829881.chain_2566,blat.proc3829881.chain_2567	3	STRG.21596.1	1
scaffold_15	alt_donor	2782592	2782593	-	asmbl_15058	none	STRG.18054.2	1	STRG.18054.3,blat.proc3829895.chain_2771	2
scaffold_20	alt_acceptor	11733012	11733013	+	asmbl_26246	none	STRG.23668.2	1	STRG.23668.1,blat.proc3829883.chain_823	2
scaffold_13	alt_acceptor	8955238	8955239	+	asmbl_11147,asmbl_11150	none	STRG.16151.2,STRG.16151.3,blat.proc3829879.chain_864	3	blat.proc3829879.chain_861	1
scaffold_3	starts_in_intron	10575893	10575893	+	asmbl_40231	none	STRG.3493.2	1	STRG.3493.1,Trinity_GG_1964_c0_g1_i1,blat.proc3829871.chain_3649	3
scaffold_9	alt_acceptor	6941760	6941761	+	asmbl_54099	none	STRG.11193.1,blat.proc3829875.chain_3624	2	STRG.11193.2	1
scaffold_5	retained_exon	2167501	2167719	-	asmbl_45264	none	STRG.5744.1,blat.proc3829889.chain_1867	2	STRG.5744.2	1
scaffold_17	spliced_intron	9942619	9942696	+	asmbl_18254,asmbl_18255	none	STRG.20600.1,Trinity_GG_11273_c0_g1_i1,blat.proc3829881.chain_1385,blat.proc3829881.chain_1387	4	blat.proc3829881.chain_1386,blat.proc3829881.chain_1389	2
scaffold_5	skipped_exon	3591643	3592652	-	asmbl_45309,asmbl_45312	none	STRG.5822.2,STRG.5822.4,blat.proc3829889.chain_1927	3	STRG.5822.5	1
scaffold_19	alt_acceptor	12136976	12136977	+	asmbl_22562,asmbl_22563,asmbl_22565	none	STRG.22531.1,STRG.22531.2,Trinity_GG_12454_c1_g1_i3,Trinity_GG_12454_c1_g1_i6,Trinity_GG_12454_c1_g1_i7,blat.proc3829881.chain_3458,blat.proc3829881.chain_3459,blat.proc3829881.chain_3460	8	STRG.22531.3	1
scaffold_1	alternate_exon	20134789	20135003	-	asmbl_1172	none	STRG.1381.2	1	STRG.1381.4,STRG.1381.5	2
scaffold_10	skipped_exon	4335933	4337947	-	asmbl_3199	none	STRG.12268.2,blat.proc3829893.chain_647	2	STRG.12268.1,blat.proc3829893.chain_646	2
scaffold_9	retained_intron	13323052	13323206	-	asmbl_55402	none	STRG.11623.1,Trinity_GG_23424_c0_g1_i2,blat.proc3829891.chain_3741	3	STRG.11623.2,blat.proc3829891.chain_3742	2
scaffold_7	spliced_intron	12082375	12082576	+	asmbl_51098,asmbl_51099	none	STRG.9310.2,Trinity_GG_5111_c0_g1_i3,blat.proc3829875.chain_1657	3	Trinity_GG_5111_c0_g1_i2,blat.proc3829875.chain_1656	2
scaffold_10	retained_intron	10801165	10801378	+	asmbl_4714	none	STRG.12756.2	1	STRG.12756.1,blat.proc3829877.chain_1330,blat.proc3829877.chain_1331,blat.proc3829877.chain_1332	4
scaffold_8	retained_intron	9466054	9466151	-	asmbl_53032,asmbl_53036,asmbl_53037	none	Trinity_GG_22724_c0_g1_i7,blat.proc3829891.chain_2400,blat.proc3829891.chain_2408	3	STRG.10197.1,blat.proc3829891.chain_2403,blat.proc3829891.chain_2405,blat.proc3829891.chain_2406,blat.proc3829891.chain_2407	5
scaffold_3	alternate_exon	12041685	12041899	-	asmbl_39155,asmbl_39157	none	STRG.3625.2,STRG.3625.3,blat.proc3829887.chain_3398	3	STRG.3625.1,Trinity_GG_19000_c0_g1_i2,blat.proc3829887.chain_3397,blat.proc3829887.chain_3399	4
scaffold_1	ends_in_intron	14192923	14192923	-	asmbl_873	none	Trinity_GG_17568_c1_g1_i1,blat.proc3829887.chain_950	2	STRG.1005.1,blat.proc3829887.chain_945,blat.proc3829887.chain_947,blat.proc3829887.chain_948,blat.proc3829887.chain_949	5
scaffold_9	spliced_intron	11021992	11022126	-	asmbl_55232	none	STRG.11396.2	1	STRG.11396.1,blat.proc3829891.chain_3554,blat.proc3829891.chain_3555	3
scaffold_26	retained_exon	1994577	1994623	+	asmbl_35260	none	STRG.27926.1	1	blat.proc3829885.chain_907	1
scaffold_9	alternate_exon	9861402	9870173	-	asmbl_55208	none	STRG.11345.1,Trinity_GG_23302_c0_g1_i4,blat.proc3829891.chain_3522	3	STRG.11345.4,Trinity_GG_23302_c2_g1_i1,blat.proc3829891.chain_3521,blat.proc3829891.chain_3524	4
scaffold_10	alternate_exon	17157412	17157572	-	asmbl_3938	none	STRG.13151.2,blat.proc3829893.chain_1643	2	STRG.13151.1,blat.proc3829893.chain_1644	2
scaffold_26	alt_acceptor	4115549	4115550	+	asmbl_35391	none	STRG.28097.1,Trinity_GG_15503_c0_g1_i2,blat.proc3829885.chain_1069	3	STRG.28097.2	1
scaffold_15	alt_donor	12742614	12742615	+	asmbl_14541,asmbl_14544	none	STRG.18731.2,STRG.18731.3,blat.proc3829879.chain_3353	3	STRG.18731.1,STRG.18731.4,blat.proc3829879.chain_3350,blat.proc3829879.chain_3352	4
scaffold_14	retained_intron	4116419	4116564	+	asmbl_11947,asmbl_11948,asmbl_11949	none	STRG.16951.3,STRG.16951.4,STRG.16951.5,Trinity_GG_9333_c0_g1_i1,Trinity_GG_9333_c0_g1_i3,Trinity_GG_9333_c0_g1_i4,blat.proc3829879.chain_1686,blat.proc3829879.chain_1688,blat.proc3829879.chain_1690	9	STRG.16951.2,Trinity_GG_9333_c0_g1_i7,blat.proc3829879.chain_1689	3
scaffold_14	skipped_exon	2374520	2375890	-	asmbl_12916,asmbl_12922	none	STRG.16839.5,blat.proc3829895.chain_1581	2	STRG.16839.1,STRG.16839.3,STRG.16839.4,blat.proc3829895.chain_1580	4
scaffold_25	ends_in_intron	3084872	3084872	-	asmbl_34082	none	blat.proc3829901.chain_491	1	STRG.27230.1,STRG.27230.2,STRG.27230.3,blat.proc3829901.chain_488,blat.proc3829901.chain_489,blat.proc3829901.chain_490	6
scaffold_1	starts_in_intron	12931025	12931025	+	asmbl_2264	none	Trinity_GG_546_c0_g1_i1,blat.proc3829871.chain_978	2	STRG.922.1,STRG.922.2,Trinity_GG_546_c0_g1_i2,blat.proc3829871.chain_979	4
scaffold_5	starts_in_intron	14125358	14125358	-	asmbl_45969	none	blat.proc3829873.chain_2715	1	STRG.6617.1	1
scaffold_13	alt_acceptor	5030	5031	+	asmbl_10419	none	Trinity_GG_8474_c0_g1_i5,blat.proc3829879.chain_77	2	STRG.15408.2,Trinity_GG_8474_c0_g1_i4,blat.proc3829879.chain_74	3
scaffold_6	skipped_exon	16595070	16596107	-	asmbl_49078	none	STRG.8376.1,blat.proc3829891.chain_696	2	STRG.8376.2,STRG.8376.3,blat.proc3829891.chain_695	3
scaffold_4	spliced_intron	4095323	4095985	+	asmbl_42544	none	STRG.4313.1,blat.proc3829873.chain_635	2	STRG.4313.2,blat.proc3829873.chain_632,blat.proc3829873.chain_634	3
scaffold_4	ends_in_intron	4834664	4834664	+	asmbl_42637	none	STRG.4373.1,blat.proc3829873.chain_757	2	STRG.4373.2,blat.proc3829873.chain_758	2
scaffold_14	alt_acceptor	7520562	7520563	+	asmbl_12153	none	STRG.17182.2	1	STRG.17182.1,Trinity_GG_9453_c0_g1_i1,Trinity_GG_9453_c0_g1_i2,blat.proc3829879.chain_1913,blat.proc3829879.chain_1914	5
scaffold_19	alternate_exon	688505	691035	-	asmbl_21201	none	STRG.21837.1,STRG.21837.2,Trinity_GG_29194_c1_g1_i1,blat.proc3829897.chain_2609	4	STRG.21837.3,blat.proc3829897.chain_2608	2
scaffold_8	spliced_intron	17454124	17454424	+	asmbl_52466	none	STRG.10660.2,Trinity_GG_5884_c0_g1_i5,blat.proc3829875.chain_3085	3	blat.proc3829875.chain_3087	1
scaffold_10	starts_in_intron	8894640	8894640	-	asmbl_3531	none	blat.proc3829893.chain_1126	1	STRG.12629.1,blat.proc3829893.chain_1127,blat.proc3829893.chain_1129,blat.proc3829893.chain_1130,blat.proc3829893.chain_1131,blat.proc3829893.chain_1132,blat.proc3829893.chain_1133,blat.proc3829893.chain_1134,blat.proc3829893.chain_1135,blat.proc3829893.chain_1136	10
scaffold_2	ends_in_intron	4681565	4681565	+	asmbl_24400	none	blat.proc3829871.chain_1885	1	STRG.1894.1,Trinity_GG_1029_c1_g1_i5,blat.proc3829871.chain_1883,blat.proc3829871.chain_1884,blat.proc3829871.chain_1886	5
scaffold_2	starts_in_intron	169289	169289	+	asmbl_24099	none	blat.proc3829871.chain_1596	1	STRG.1523.1,STRG.1523.2,blat.proc3829871.chain_1595,blat.proc3829871.chain_1597,blat.proc3829871.chain_1599	5
scaffold_25	spliced_intron	6324156	6324245	-	asmbl_34329,asmbl_34333	none	STRG.27499.1,blat.proc3829901.chain_861,blat.proc3829901.chain_862	3	STRG.27499.2,STRG.27499.3,blat.proc3829901.chain_865	3
scaffold_20	ends_in_intron	9149786	9149786	+	asmbl_25993	none	blat.proc3829883.chain_555	1	STRG.23448.1,blat.proc3829883.chain_554	2
scaffold_2	retained_intron	6301801	6302073	-	asmbl_23216	none	Trinity_GG_18070_c0_g1_i1,Trinity_GG_18070_c0_g1_i3,blat.proc3829887.chain_1748,blat.proc3829887.chain_1750	4	STRG.1994.1,Trinity_GG_18070_c0_g1_i2,blat.proc3829887.chain_1749	3
scaffold_10	starts_in_intron	14827174	14827174	+	asmbl_4943	none	blat.proc3829877.chain_1557	1	STRG.13014.1,STRG.13014.2,STRG.13014.3,blat.proc3829877.chain_1558	4
scaffold_4	alt_donor	4124594	4124595	-	asmbl_41238	none	STRG.4324.3,blat.proc3829889.chain_449	2	STRG.4324.1,blat.proc3829889.chain_447	2
scaffold_12	retained_exon	14104459	14104564	-	asmbl_8111,asmbl_8114	none	Trinity_GG_25546_c0_g1_i8,blat.proc3829893.chain_3677,blat.proc3829893.chain_3680	3	STRG.15225.1,Trinity_GG_25546_c0_g1_i1,Trinity_GG_25546_c0_g1_i5,blat.proc3829893.chain_3674,blat.proc3829893.chain_3675,blat.proc3829893.chain_3682	6
scaffold_13	alt_acceptor	2340364	2340365	+	asmbl_10578	none	blat.proc3829879.chain_156	1	blat.proc3829879.chain_160	1
scaffold_7	starts_in_intron	12083166	12083166	+	asmbl_51101	none	Trinity_GG_5111_c1_g1_i1,blat.proc3829875.chain_1659	2	STRG.9310.1,STRG.9310.2,STRG.9310.3,blat.proc3829875.chain_1660	4
scaffold_4	retained_intron	4113203	4113283	-	asmbl_41226	none	blat.proc3829889.chain_378	1	STRG.4314.1,blat.proc3829889.chain_373,blat.proc3829889.chain_375,blat.proc3829889.chain_376	4
scaffold_5	alternate_exon	3089599	3089823	+	asmbl_43875	none	STRG.5800.1	1	STRG.5800.2,blat.proc3829873.chain_1980	2
scaffold_1	spliced_intron	15888312	15889037	+	asmbl_2435	none	STRG.1117.1,Trinity_GG_643_c0_g1_i1,blat.proc3829871.chain_1170	3	STRG.1117.2,blat.proc3829871.chain_1169	2
scaffold_13	ends_in_intron	221732	221732	+	asmbl_10432	none	Trinity_GG_8486_c0_g2_i1,blat.proc3829879.chain_102	2	STRG.15414.1,blat.proc3829879.chain_100,blat.proc3829879.chain_98,blat.proc3829879.chain_99	4
scaffold_2	alternate_exon	4070311	4070469	-	asmbl_23077	none	STRG.1852.2	1	STRG.1852.1,blat.proc3829887.chain_1658	2
scaffold_3	spliced_intron	11997571	11997651	+	asmbl_40342	none	STRG.3619.1	1	Trinity_GG_1992_c0_g1_i1,blat.proc3829871.chain_3698	2
scaffold_17	ends_in_intron	3941870	3941870	+	asmbl_17875	none	Trinity_GG_11001_c0_g1_i2,blat.proc3829881.chain_912	2	STRG.20135.1,Trinity_GG_11001_c0_g1_i1,blat.proc3829881.chain_913	3
scaffold_11	spliced_intron	3095645	3095846	+	asmbl_5362	none	STRG.13423.2	1	STRG.13423.1	1
scaffold_3	ends_in_intron	18336142	18336142	-	asmbl_39558	none	Trinity_GG_19247_c0_g1_i1,blat.proc3829889.chain_107	2	STRG.4035.1	1
scaffold_6	alt_donor	1498115	1498116	+	asmbl_46664	none	STRG.7184.3,Trinity_GG_3973_c0_g1_i1,blat.proc3829873.chain_3354	3	STRG.7184.2,blat.proc3829873.chain_3356	2
scaffold_10	spliced_intron	17090940	17090995	-	asmbl_3932	none	STRG.13143.2	1	STRG.13143.1	1
scaffold_18	alternate_exon	2834126	2835064	+	asmbl_20452	none	STRG.21133.5	1	STRG.21133.1,STRG.21133.2,blat.proc3829881.chain_1915,blat.proc3829881.chain_1923	4
scaffold_23	retained_intron	7044875	7045050	-	asmbl_31733	none	blat.proc3829899.chain_3120	1	STRG.26010.1,blat.proc3829899.chain_3117,blat.proc3829899.chain_3119	3
scaffold_21	retained_intron	406429	406790	-	asmbl_27342,asmbl_27343,asmbl_27344	none	STRG.23722.3,blat.proc3829899.chain_768,blat.proc3829899.chain_769,blat.proc3829899.chain_774	4	STRG.23722.1,STRG.23722.2,STRG.23722.4,STRG.23722.5,Trinity_GG_30229_c0_g1_i1,Trinity_GG_30229_c0_g1_i2,Trinity_GG_30229_c0_g1_i7,Trinity_GG_30229_c0_g1_i9,blat.proc3829899.chain_770,blat.proc3829899.chain_771,blat.proc3829899.chain_772,blat.proc3829899.chain_773	12
scaffold_5	starts_in_intron	13810261	13810261	-	asmbl_45944	none	STRG.6592.2	1	STRG.6592.1,blat.proc3829889.chain_2652,blat.proc3829889.chain_2653,blat.proc3829889.chain_2655	4
scaffold_27	skipped_exon	7192145	7194416	-	asmbl_37047	none	STRG.29056.2,blat.proc3829901.chain_2211	2	STRG.29056.1,blat.proc3829901.chain_2212	2
scaffold_23	ends_in_intron	5017587	5017587	-	asmbl_31597	none	Trinity_GG_31435_c0_g1_i3,blat.proc3829899.chain_2903	2	STRG.25864.1,blat.proc3829899.chain_2902,blat.proc3829899.chain_2904	3
scaffold_9	alternate_exon	9705074	9708177	+	asmbl_54211,asmbl_54216,asmbl_54217	none	STRG.11336.1,STRG.11336.2,STRG.11336.3,Trinity_GG_6324_c1_g1_i12,blat.proc3829877.chain_109,blat.proc3829877.chain_110,blat.proc3829877.chain_113	7	STRG.11336.4	1
scaffold_11	alt_acceptor	16613199	16613200	-	asmbl_7210	none	STRG.14335.2,blat.proc3829893.chain_2678	2	STRG.14335.1,blat.proc3829893.chain_2677	2
scaffold_7	ends_in_intron	6036417	6036417	+	asmbl_50721,asmbl_50723	none	blat.proc3829875.chain_1339,blat.proc3829875.chain_1341	2	STRG.8898.1,STRG.8898.2,Trinity_GG_4914_c0_g1_i1,Trinity_GG_4914_c0_g1_i5,blat.proc3829875.chain_1338,blat.proc3829875.chain_1340	6
scaffold_3	alt_acceptor	17364766	17364767	-	asmbl_39497,asmbl_39501,asmbl_39502	none	STRG.3972.3,blat.proc3829889.chain_25,blat.proc3829889.chain_31	3	STRG.3972.1,STRG.3972.4,blat.proc3829889.chain_23,blat.proc3829889.chain_24,blat.proc3829889.chain_29,blat.proc3829889.chain_30	6
scaffold_22	alt_donor	693358	693359	+	asmbl_29176	none	STRG.24705.1,Trinity_GG_13663_c0_g1_i1,blat.proc3829883.chain_1766	3	STRG.24705.2,STRG.24705.3	2
scaffold_23	starts_in_intron	4449529	4449529	-	asmbl_31589	none	Trinity_GG_31473_c0_g1_i3,blat.proc3829899.chain_2972	2	STRG.25842.1,STRG.25842.2,STRG.25842.3,STRG.25842.4,Trinity_GG_31473_c0_g1_i1,Trinity_GG_31473_c0_g1_i2,Trinity_GG_31473_c0_g1_i4,Trinity_GG_31473_c0_g1_i6,blat.proc3829899.chain_2968,blat.proc3829899.chain_2969,blat.proc3829899.chain_2970,blat.proc3829899.chain_2971	12
scaffold_6	retained_exon	18916805	18916886	-	asmbl_49224	none	STRG.8553.1	1	STRG.8553.2,STRG.8553.3,blat.proc3829891.chain_869,blat.proc3829891.chain_870	4
scaffold_2	alt_donor	9140292	9140293	-	asmbl_23370,asmbl_23371	none	blat.proc3829887.chain_2071,blat.proc3829887.chain_2072	2	STRG.2160.1,STRG.2160.2	2
scaffold_25	spliced_intron	6038950	6039040	-	asmbl_34282,asmbl_34283	none	STRG.27467.1,STRG.27467.2,blat.proc3829901.chain_790	3	Trinity_GG_32410_c0_g1_i2,blat.proc3829901.chain_791	2
scaffold_2	alternate_exon	6517217	6517412	+	asmbl_24500	none	STRG.2022.4	1	STRG.2022.5	1
scaffold_21	alt_donor	7493517	7493518	+	asmbl_28758	none	blat.proc3829883.chain_1414	1	STRG.24265.1	1
scaffold_18	alt_donor	1955780	1955781	+	asmbl_20422	none	Trinity_GG_11610_c0_g1_i2,blat.proc3829881.chain_1972	2	STRG.21076.2,Trinity_GG_11610_c0_g1_i1,blat.proc3829881.chain_1973	3
scaffold_6	retained_exon	2481516	2481853	-	asmbl_48077	none	blat.proc3829889.chain_3219	1	STRG.7236.3	1
scaffold_19	alt_acceptor	6213462	6213463	+	asmbl_22203	none	STRG.22141.1,blat.proc3829881.chain_3090	2	STRG.22141.2,STRG.22141.3,blat.proc3829881.chain_3088,blat.proc3829881.chain_3089	4
scaffold_2	retained_intron	7924499	7924931	-	asmbl_23319	none	blat.proc3829887.chain_2034	1	STRG.2092.1,STRG.2092.2,blat.proc3829887.chain_2033,blat.proc3829887.chain_2036	4
scaffold_14	retained_intron	15638709	15638796	+	asmbl_12617	none	STRG.17791.2	1	STRG.17791.1,Trinity_GG_9788_c0_g1_i1,blat.proc3829879.chain_2494	3
scaffold_1555	retained_exon	1311	1456	-	asmbl_15981	none	STRG.30598.1	1	STRG.30598.2	1
scaffold_25	starts_in_intron	3712989	3712989	-	asmbl_34133	none	blat.proc3829901.chain_608	1	STRG.27305.1,blat.proc3829901.chain_609	2
scaffold_14	retained_intron	15693711	15693818	-	asmbl_13720	none	STRG.17796.1	1	STRG.17796.3	1
scaffold_1	skipped_exon	5996412	5997450	-	asmbl_315,asmbl_319	none	STRG.403.1,blat.proc3829887.chain_310,blat.proc3829887.chain_311	3	STRG.403.2,blat.proc3829887.chain_309	2
scaffold_1	alternate_exon	19006593	19006653	+	asmbl_2561	none	STRG.1322.3	1	STRG.1322.2,STRG.1322.4	2
scaffold_11	spliced_intron	8074409	8074589	-	asmbl_6800,asmbl_6801,asmbl_6802,asmbl_6803,asmbl_6804,asmbl_6805,asmbl_6812	none	STRG.13802.1,STRG.13802.2,Trinity_GG_24711_c0_g1_i17,Trinity_GG_24711_c0_g1_i18,Trinity_GG_24711_c0_g1_i3,Trinity_GG_24711_c0_g1_i5,Trinity_GG_24711_c0_g1_i8,blat.proc3829893.chain_2197,blat.proc3829893.chain_2201,blat.proc3829893.chain_2204,blat.proc3829893.chain_2205,blat.proc3829893.chain_2211	12	blat.proc3829893.chain_2198,blat.proc3829893.chain_2206,blat.proc3829893.chain_2209	3
scaffold_13	alt_acceptor	10239640	10239641	-	asmbl_10014,asmbl_10016	none	STRG.16243.1,STRG.16243.3,blat.proc3829895.chain_977	3	STRG.16243.4	1
scaffold_5	starts_in_intron	7120786	7120786	-	asmbl_45551	none	blat.proc3829889.chain_2206	1	STRG.6115.1,blat.proc3829889.chain_2205	2
scaffold_11	spliced_intron	262676	262775	-	asmbl_6363,asmbl_6364	none	STRG.13257.1,blat.proc3829893.chain_1718,blat.proc3829893.chain_1720	3	blat.proc3829893.chain_1719	1
scaffold_1	alternate_exon	9194576	9194657	+	asmbl_1955	none	STRG.608.3	1	STRG.608.1,STRG.608.2,Trinity_GG_384_c0_g1_i1,Trinity_GG_384_c0_g1_i2,blat.proc3829871.chain_666,blat.proc3829871.chain_667	6
scaffold_7	ends_in_intron	4498238	4498238	-	asmbl_49680,asmbl_49681	none	blat.proc3829891.chain_1191,blat.proc3829891.chain_1192	2	STRG.8813.1,STRG.8813.2,Trinity_GG_22050_c0_g1_i4,blat.proc3829891.chain_1190,blat.proc3829891.chain_1193	5
scaffold_26	alt_donor	6693568	6693569	-	asmbl_34967	none	STRG.28339.1,blat.proc3829901.chain_1517	2	STRG.28339.2,blat.proc3829901.chain_1516	2
scaffold_17	alt_donor	2768330	2768331	-	asmbl_18830	none	STRG.20069.1,blat.proc3829897.chain_1033	2	STRG.20069.2	1
scaffold_4	starts_in_intron	7013628	7013628	+	asmbl_42774	none	Trinity_GG_2510_c0_g1_i2	1	STRG.4534.1,blat.proc3829873.chain_891	2
scaffold_1	starts_in_intron	12462722	12462722	-	asmbl_729	none	blat.proc3829887.chain_728	1	STRG.864.1,STRG.864.2,STRG.864.3,STRG.864.4	4
scaffold_20	alternate_exon	7267171	7267248	+	asmbl_25871	none	STRG.23283.3,blat.proc3829883.chain_360	2	STRG.23283.1,STRG.23283.2,blat.proc3829883.chain_359	3
scaffold_20	spliced_intron	7473965	7474216	-	asmbl_26825,asmbl_26827,asmbl_26828,asmbl_26829,asmbl_26830,asmbl_26831,asmbl_26832	none	STRG.23308.1,blat.proc3829899.chain_389,blat.proc3829899.chain_391,blat.proc3829899.chain_393,blat.proc3829899.chain_394,blat.proc3829899.chain_396,blat.proc3829899.chain_399,blat.proc3829899.chain_401	8	blat.proc3829899.chain_390	1
scaffold_5	alt_acceptor	18369198	18369199	+	asmbl_44909	none	STRG.6960.1,blat.proc3829873.chain_3112	2	STRG.6960.2	1
scaffold_14	retained_intron	1069783	1069872	+	asmbl_11769	none	blat.proc3829879.chain_1439	1	STRG.16754.3,STRG.16754.4,STRG.16754.5,blat.proc3829879.chain_1436,blat.proc3829879.chain_1441	5
scaffold_4	spliced_intron	6299339	6299408	+	asmbl_42721,asmbl_42723,asmbl_42724,asmbl_42725	none	Trinity_GG_2497_c0_g1_i9,blat.proc3829873.chain_865,blat.proc3829873.chain_867,blat.proc3829873.chain_870,blat.proc3829873.chain_871	5	STRG.4502.1,Trinity_GG_2497_c0_g1_i1,Trinity_GG_2497_c0_g1_i6,Trinity_GG_2497_c0_g1_i8,blat.proc3829873.chain_863,blat.proc3829873.chain_866,blat.proc3829873.chain_868	7
scaffold_22	retained_intron	752536	752836	+	asmbl_29184	none	Trinity_GG_13676_c0_g1_i3,blat.proc3829883.chain_1785	2	STRG.24716.1,Trinity_GG_13676_c0_g1_i1,blat.proc3829883.chain_1786	3
scaffold_7	alt_donor	16155146	16155147	+	asmbl_51348	none	STRG.9568.2,Trinity_GG_5276_c0_g1_i1,blat.proc3829875.chain_1960	3	STRG.9568.1,STRG.9568.3,Trinity_GG_5276_c0_g1_i2,blat.proc3829875.chain_1961	4
scaffold_3	retained_intron	4268351	4268565	-	asmbl_38748	none	STRG.3118.1,Trinity_GG_18712_c0_g1_i2,blat.proc3829887.chain_2882	3	STRG.3118.3,Trinity_GG_18712_c0_g1_i1,blat.proc3829887.chain_2883	3
scaffold_10	retained_exon	13960447	13960532	-	asmbl_3843	none	STRG.12974.1,blat.proc3829893.chain_1447	2	STRG.12974.2,blat.proc3829893.chain_1446	2
scaffold_2	alt_acceptor	6652276	6652277	+	asmbl_24515	none	STRG.2024.1,blat.proc3829871.chain_2085	2	STRG.2024.2,blat.proc3829871.chain_2083	2
scaffold_26	ends_in_intron	5557093	5557093	+	asmbl_35549	none	Trinity_GG_15578_c4_g1_i1,blat.proc3829885.chain_1212	2	STRG.28248.1,blat.proc3829885.chain_1208	2
scaffold_17	spliced_intron	13962267	13962296	-	asmbl_19440,asmbl_19441	none	STRG.20874.1,STRG.20874.2	2	STRG.20874.3,Trinity_GG_28720_c1_g1_i1,blat.proc3829897.chain_1760,blat.proc3829897.chain_1763	4
scaffold_8	alternate_exon	2690276	2690399	+	asmbl_51725	none	STRG.9799.3	1	STRG.9799.1,STRG.9799.2	2
scaffold_1	alt_donor	5192251	5192252	-	asmbl_244	none	STRG.321.2	1	STRG.321.1,blat.proc3829887.chain_202	2
scaffold_14	alt_acceptor	15565539	15565540	+	asmbl_12608	none	STRG.17784.3	1	STRG.17784.2,blat.proc3829879.chain_2468	2
scaffold_27	spliced_intron	160376	160481	-	asmbl_36605	none	STRG.28532.1,Trinity_GG_32958_c0_g1_i1,blat.proc3829901.chain_1697	3	STRG.28532.2,blat.proc3829901.chain_1696	2
scaffold_3	spliced_intron	5129399	5129760	-	asmbl_38786	none	STRG.3205.2,blat.proc3829887.chain_2930	2	STRG.3205.1,blat.proc3829887.chain_2931	2
scaffold_23	alternate_exon	2992244	2992335	-	asmbl_31493	none	STRG.25729.3	1	STRG.25729.1,blat.proc3829899.chain_2864,blat.proc3829899.chain_2872	3
scaffold_1	retained_intron	12452095	12452203	+	asmbl_2211	none	blat.proc3829871.chain_947	1	STRG.857.1,STRG.857.2,blat.proc3829871.chain_949	3
scaffold_14	alt_acceptor	8093795	8093796	-	asmbl_13229	none	STRG.17212.2,Trinity_GG_26645_c0_g1_i4,blat.proc3829895.chain_1893	3	STRG.17212.3,STRG.17212.4,Trinity_GG_26645_c0_g1_i1,Trinity_GG_26645_c0_g1_i5,blat.proc3829895.chain_1888,blat.proc3829895.chain_1891	6
scaffold_9	spliced_intron	11843908	11844161	-	asmbl_55293,asmbl_55294,asmbl_55297,asmbl_55298,asmbl_55299,asmbl_55300	none	STRG.11491.1,blat.proc3829891.chain_3620,blat.proc3829891.chain_3621,blat.proc3829891.chain_3622,blat.proc3829891.chain_3623,blat.proc3829891.chain_3624,blat.proc3829891.chain_3625,blat.proc3829891.chain_3626	8	blat.proc3829891.chain_3619	1
scaffold_2	skipped_exon	17613187	17614274	+	asmbl_25219	none	STRG.2650.1,blat.proc3829871.chain_2855	2	STRG.2650.2,blat.proc3829871.chain_2856	2
scaffold_22	starts_in_intron	4774097	4774097	+	asmbl_29330	none	Trinity_GG_13756_c0_g1_i1,blat.proc3829883.chain_1930	2	STRG.24875.1,Trinity_GG_13756_c0_g1_i2,blat.proc3829883.chain_1929	3
scaffold_1	alt_donor	12547421	12547422	-	asmbl_738	none	STRG.867.2	1	STRG.867.1,blat.proc3829887.chain_661,blat.proc3829887.chain_663	3
scaffold_2	ends_in_intron	6764910	6764910	+	asmbl_24519	none	Trinity_GG_1102_c1_g1_i1,blat.proc3829871.chain_2014	2	STRG.2035.1,Trinity_GG_1102_c0_g1_i1,Trinity_GG_1102_c0_g1_i10,Trinity_GG_1102_c0_g1_i11,Trinity_GG_1102_c0_g1_i2,Trinity_GG_1102_c0_g1_i4,Trinity_GG_1102_c0_g1_i5,Trinity_GG_1102_c0_g1_i6,Trinity_GG_1102_c0_g1_i7,blat.proc3829871.chain_2005,blat.proc3829871.chain_2006,blat.proc3829871.chain_2007,blat.proc3829871.chain_2008,blat.proc3829871.chain_2010,blat.proc3829871.chain_2011,blat.proc3829871.chain_2012,blat.proc3829871.chain_2013	17
scaffold_15	starts_in_intron	14273991	14273991	-	asmbl_15721	none	blat.proc3829895.chain_3587	1	STRG.18836.1,blat.proc3829895.chain_3588	2
scaffold_25	alt_donor	7905468	7905469	-	asmbl_34386	none	blat.proc3829901.chain_904	1	blat.proc3829901.chain_903	1
scaffold_6	alternate_exon	12207341	12207500	+	asmbl_47319	none	STRG.7982.1,Trinity_GG_4376_c0_g1_i4,blat.proc3829875.chain_383	3	STRG.7982.2,Trinity_GG_4376_c0_g1_i3,blat.proc3829875.chain_384	3
scaffold_14	spliced_intron	8330057	8330148	-	asmbl_13269	none	STRG.17243.1,blat.proc3829895.chain_1947	2	blat.proc3829895.chain_1946	1
scaffold_7	starts_in_intron	7637251	7637251	-	asmbl_49774	none	blat.proc3829891.chain_1301	1	STRG.9008.1,blat.proc3829891.chain_1299,blat.proc3829891.chain_1300	3
scaffold_18	retained_intron	4308398	4308494	+	asmbl_20538	none	STRG.21210.2	1	STRG.21210.1	1
scaffold_3	retained_intron	9517588	9517928	+	asmbl_40184,asmbl_40186,asmbl_40187	none	STRG.3434.2,Trinity_GG_1959_c0_g1_i3,blat.proc3829871.chain_3637,blat.proc3829871.chain_3639	4	blat.proc3829871.chain_3640	1
scaffold_19	alt_acceptor	12822377	12822378	-	asmbl_21756,asmbl_21757,asmbl_21760,asmbl_21764	none	STRG.22593.1,STRG.22593.2,STRG.22593.3,blat.proc3829897.chain_3275,blat.proc3829897.chain_3278,blat.proc3829897.chain_3279	6	blat.proc3829897.chain_3280	1
scaffold_7	alternate_exon	1227342	1231310	+	asmbl_50470	none	STRG.8627.2,Trinity_GG_4740_c0_g1_i15,blat.proc3829875.chain_1052	3	STRG.8627.7	1
scaffold_2	alt_donor	13072548	13072549	-	asmbl_23503,asmbl_23505,asmbl_23506,asmbl_23507,asmbl_23508,asmbl_23509	none	STRG.2340.1,STRG.2340.3,blat.proc3829887.chain_2256,blat.proc3829887.chain_2257,blat.proc3829887.chain_2258,blat.proc3829887.chain_2259,blat.proc3829887.chain_2262	7	STRG.2340.2,blat.proc3829887.chain_2255,blat.proc3829887.chain_2260	3
scaffold_17	ends_in_intron	7072393	7072393	-	asmbl_19076	none	blat.proc3829897.chain_1262	1	STRG.20369.1,blat.proc3829897.chain_1261	2
scaffold_20	retained_intron	8340131	8340449	-	asmbl_26903	none	blat.proc3829899.chain_430	1	STRG.23364.1,STRG.23364.2,STRG.23364.3,blat.proc3829899.chain_431,blat.proc3829899.chain_432,blat.proc3829899.chain_433,blat.proc3829899.chain_434,blat.proc3829899.chain_435	8
scaffold_8	retained_intron	17284349	17284435	-	asmbl_53448	none	blat.proc3829891.chain_2764	1	STRG.10643.1,blat.proc3829891.chain_2763	2
scaffold_28	starts_in_intron	7767672	7767672	-	asmbl_37744	none	blat.proc3829901.chain_2941	1	STRG.29827.1,STRG.29827.2,blat.proc3829901.chain_2942,blat.proc3829901.chain_2943	4
scaffold_10	spliced_intron	6064811	6065209	+	asmbl_4511	none	blat.proc3829877.chain_1068	1	STRG.12431.1,STRG.12431.2,STRG.12431.3,STRG.12431.4,STRG.12431.5,blat.proc3829877.chain_1065,blat.proc3829877.chain_1066,blat.proc3829877.chain_1067,blat.proc3829877.chain_1070,blat.proc3829877.chain_1071,blat.proc3829877.chain_1072,blat.proc3829877.chain_1073	12
scaffold_6	spliced_intron	15759616	15760387	-	asmbl_49021	none	STRG.8311.1	1	STRG.8311.2	1
scaffold_15	retained_intron	8039747	8039835	-	asmbl_15346	none	STRG.18369.2,Trinity_GG_27305_c0_g1_i5,Trinity_GG_27305_c0_g1_i6,blat.proc3829895.chain_3068,blat.proc3829895.chain_3071	5	STRG.18369.3,Trinity_GG_27305_c0_g1_i3,blat.proc3829895.chain_3070	3
scaffold_2	alt_donor	13898326	13898327	-	asmbl_23549,asmbl_23552,asmbl_23553,asmbl_23554,asmbl_23555	none	STRG.2382.1,STRG.2382.2,blat.proc3829887.chain_2287,blat.proc3829887.chain_2288,blat.proc3829887.chain_2289,blat.proc3829887.chain_2290	6	Trinity_GG_18354_c4_g1_i1,blat.proc3829887.chain_2294	2
scaffold_11	retained_exon	1143917	1145017	+	asmbl_5282	none	STRG.13296.1,blat.proc3829877.chain_1729	2	STRG.13296.2,blat.proc3829877.chain_1728	2
scaffold_5	ends_in_intron	2327876	2327876	-	asmbl_45276	none	Trinity_GG_20250_c0_g1_i2,blat.proc3829889.chain_1842	2	STRG.5755.1,STRG.5755.2,blat.proc3829889.chain_1843	3
scaffold_20	alt_donor	11287202	11287203	+	asmbl_26181,asmbl_26182	none	STRG.23619.2,STRG.23619.3	2	STRG.23619.1,Trinity_GG_13069_c0_g1_i2,blat.proc3829883.chain_752,blat.proc3829883.chain_753	4
scaffold_1	alt_donor	1217415	1217416	-	asmbl_47	none	STRG.64.1,Trinity_GG_17052_c0_g1_i1,blat.proc3829885.chain_3726	3	STRG.64.3,blat.proc3829885.chain_3727	2
scaffold_4	spliced_intron	13590208	13590355	+	asmbl_43138,asmbl_43139	none	STRG.4984.1,blat.proc3829873.chain_1241	2	STRG.4984.2,STRG.4984.3,Trinity_GG_2734_c0_g1_i1,blat.proc3829873.chain_1242,blat.proc3829873.chain_1243	5
scaffold_4	alt_donor	13195409	13195410	-	asmbl_41728,asmbl_41730	none	STRG.4959.1,STRG.4959.2,blat.proc3829889.chain_1014,blat.proc3829889.chain_1015	4	STRG.4959.3,blat.proc3829889.chain_1016	2
scaffold_1	spliced_intron	6953430	6953629	+	asmbl_1854	none	STRG.490.1	1	STRG.490.2,Trinity_GG_296_c0_g1_i2,blat.proc3829871.chain_525	3
scaffold_6	starts_in_intron	9711398	9711398	-	asmbl_48565	none	STRG.7811.2,blat.proc3829889.chain_3741	2	STRG.7811.1	1
scaffold_2	ends_in_intron	6899754	6899754	+	asmbl_24536	none	Trinity_GG_1103_c4_g1_i1,blat.proc3829871.chain_2027	2	blat.proc3829871.chain_2015,blat.proc3829871.chain_2016	2
scaffold_7	starts_in_intron	13139165	13139165	-	asmbl_50106	none	Trinity_GG_22305_c0_g1_i2,blat.proc3829891.chain_1667	2	STRG.9414.1,Trinity_GG_22305_c0_g1_i3,blat.proc3829891.chain_1666	3
scaffold_12	retained_intron	2987278	2987365	-	asmbl_7474	none	STRG.14524.2,Trinity_GG_25109_c1_g1_i2	2	STRG.14524.1	1
scaffold_8	starts_in_intron	16278772	16278772	-	asmbl_53384	none	STRG.10612.3	1	STRG.10612.1,STRG.10612.2,STRG.10612.4,blat.proc3829891.chain_2748,blat.proc3829891.chain_2750	5
scaffold_4	starts_in_intron	13117028	13117028	-	asmbl_41720	none	blat.proc3829889.chain_1017	1	STRG.4954.1,blat.proc3829889.chain_1018	2
scaffold_3	spliced_intron	6692163	6692245	+	asmbl_40083	none	STRG.3288.1,Trinity_GG_1856_c0_g1_i1,blat.proc3829871.chain_3451	3	STRG.3288.2	1
scaffold_21	alt_acceptor	5956768	5956769	-	asmbl_27734	none	STRG.24113.1	1	blat.proc3829899.chain_1203,blat.proc3829899.chain_1204	2
scaffold_24	ends_in_intron	8641127	8641127	+	asmbl_32436	none	blat.proc3829883.chain_3732	1	STRG.26855.1,STRG.26855.2,blat.proc3829883.chain_3731	3
scaffold_22	retained_intron	11544027	11544174	+	asmbl_29698	none	STRG.25485.2	1	STRG.25485.1	1
scaffold_17	retained_exon	5998745	5999074	+	asmbl_17963	none	STRG.20273.5,Trinity_GG_11119_c1_g1_i2,blat.proc3829881.chain_1089,blat.proc3829881.chain_1090	4	STRG.20273.2,STRG.20273.4	2
scaffold_27	retained_intron	381931	382927	-	asmbl_36634	none	STRG.28547.3,Trinity_GG_32953_c1_g1_i2,blat.proc3829901.chain_1683,blat.proc3829901.chain_1688	4	STRG.28547.4,STRG.28547.5,blat.proc3829901.chain_1684,blat.proc3829901.chain_1685	4
scaffold_15	alt_donor	11399371	11399372	-	asmbl_15510,asmbl_15511,asmbl_15512,asmbl_15514,asmbl_15515	none	STRG.18596.1,STRG.18596.2,STRG.18596.3,STRG.18596.5,STRG.18596.6,blat.proc3829895.chain_3373,blat.proc3829895.chain_3374,blat.proc3829895.chain_3375	8	STRG.18596.4,blat.proc3829895.chain_3372	2
scaffold_22	alt_acceptor	9725622	9725623	+	asmbl_29603	none	STRG.25291.1,blat.proc3829883.chain_2279,blat.proc3829883.chain_2280	3	STRG.25291.2	1
scaffold_13	alt_acceptor	8353539	8353540	+	asmbl_11114	none	STRG.16112.3	1	STRG.16112.1,STRG.16112.2,blat.proc3829879.chain_892	3
scaffold_24	spliced_intron	3655857	3656074	+	asmbl_32163	none	STRG.26528.6,Trinity_GG_14654_c0_g1_i7,blat.proc3829883.chain_3407	3	STRG.26528.5,Trinity_GG_14654_c0_g1_i1,blat.proc3829883.chain_3409	3
scaffold_14	retained_exon	9272349	9273607	-	asmbl_13346	none	STRG.17323.2,blat.proc3829895.chain_1999	2	STRG.17323.3	1
scaffold_22	starts_in_intron	8788463	8788463	-	asmbl_30270	none	Trinity_GG_31119_c0_g1_i2	1	STRG.25217.1,blat.proc3829899.chain_2320	2
scaffold_6	alt_donor	16605444	16605445	+	asmbl_47644	none	STRG.8378.2,blat.proc3829875.chain_759	2	STRG.8378.3	1
scaffold_15	starts_in_intron	14038251	14038251	+	asmbl_14616	none	blat.proc3829879.chain_3428	1	STRG.18833.1,blat.proc3829879.chain_3427	2
scaffold_8	retained_intron	9819500	9819912	+	asmbl_52093	none	STRG.10223.2,Trinity_GG_5647_c0_g2_i1,blat.proc3829875.chain_2664	3	STRG.10223.1,Trinity_GG_5647_c0_g1_i2,blat.proc3829875.chain_2660	3
scaffold_16	retained_exon	13218005	13218082	+	asmbl_17454,asmbl_17460	none	STRG.19770.1,blat.proc3829881.chain_596,blat.proc3829881.chain_598,blat.proc3829881.chain_599	4	STRG.19770.2,STRG.19770.3,blat.proc3829881.chain_595	3
scaffold_8	retained_exon	9697152	9697319	+	asmbl_52082,asmbl_52084	none	STRG.10208.2,STRG.10208.3,blat.proc3829875.chain_2708	3	STRG.10208.1,blat.proc3829875.chain_2707	2
scaffold_6	spliced_intron	9585597	9585676	+	asmbl_47166	none	STRG.7802.1,blat.proc3829875.chain_206	2	Trinity_GG_4292_c0_g2_i1,blat.proc3829875.chain_207	2
scaffold_5	starts_in_intron	15678456	15678456	+	asmbl_44671	none	blat.proc3829873.chain_2839	1	STRG.6754.1,blat.proc3829873.chain_2840,blat.proc3829873.chain_2842	3
scaffold_18	starts_in_intron	600256	600256	-	asmbl_19626	none	blat.proc3829897.chain_1889	1	STRG.20988.1,blat.proc3829897.chain_1888	2
scaffold_22	alternate_exon	6946826	6946899	+	asmbl_29429	none	STRG.24996.1,Trinity_GG_13834_c0_g1_i1,blat.proc3829883.chain_2060	3	STRG.24996.3	1
scaffold_11	ends_in_intron	5821564	5821564	-	asmbl_6657	none	blat.proc3829893.chain_2065	1	STRG.13636.1,blat.proc3829893.chain_2064	2
scaffold_1	alternate_exon	8630865	8631688	-	asmbl_466	none	STRG.568.1,blat.proc3829887.chain_447	2	STRG.568.3,blat.proc3829887.chain_445	2
scaffold_3	skipped_exon	6041931	6044119	-	asmbl_38833	none	STRG.3255.1	1	STRG.3255.2,STRG.3255.5,STRG.3255.7	3
scaffold_16	ends_in_intron	6206273	6206273	-	asmbl_16327	none	blat.proc3829897.chain_428	1	STRG.19375.3	1
scaffold_17	alt_acceptor	3295294	3295295	+	asmbl_17843	none	STRG.20099.2	1	STRG.20099.1,Trinity_GG_11014_c0_g1_i1,blat.proc3829881.chain_927	3
scaffold_2	alt_acceptor	7936939	7936940	+	asmbl_24636	none	Trinity_GG_1149_c0_g1_i1,blat.proc3829871.chain_2101	2	STRG.2090.1,Trinity_GG_1149_c0_g1_i4,Trinity_GG_1149_c0_g1_i5,blat.proc3829871.chain_2100,blat.proc3829871.chain_2104	5
scaffold_18	retained_intron	7662113	7662196	+	asmbl_20796,asmbl_20797	none	STRG.21461.3,Trinity_GG_11871_c0_g1_i4	2	STRG.21461.2,STRG.21461.4	2
scaffold_6	alternate_exon	14137962	14139407	+	asmbl_47523	none	blat.proc3829875.chain_552	1	STRG.8170.2	1
scaffold_19	alt_acceptor	12492120	12492121	+	asmbl_22618	none	STRG.22568.4,blat.proc3829881.chain_3537	2	STRG.22568.1,STRG.22568.2,STRG.22568.5,STRG.22568.6,blat.proc3829881.chain_3533,blat.proc3829881.chain_3535,blat.proc3829881.chain_3538	7
scaffold_24	alt_donor	5940578	5940579	+	asmbl_32275,asmbl_32276,asmbl_32280,asmbl_32281	none	blat.proc3829883.chain_3539,blat.proc3829883.chain_3544,blat.proc3829883.chain_3545,blat.proc3829883.chain_3547	4	STRG.26645.1,blat.proc3829883.chain_3535,blat.proc3829883.chain_3537,blat.proc3829883.chain_3542,blat.proc3829883.chain_3543,blat.proc3829883.chain_3548,blat.proc3829883.chain_3549	7
scaffold_17	alt_acceptor	6611701	6611702	+	asmbl_17990	none	STRG.20301.1,blat.proc3829881.chain_1046	2	STRG.20301.2	1
scaffold_19	retained_intron	810594	810631	+	asmbl_22012	none	STRG.21852.1	1	STRG.21852.2	1
scaffold_13	alternate_exon	14563634	14566043	-	asmbl_10163,asmbl_10166	none	STRG.16497.1,STRG.16497.5,blat.proc3829895.chain_1172	3	blat.proc3829895.chain_1170	1
scaffold_8	retained_intron	18084680	18084897	-	asmbl_53512,asmbl_53515	none	STRG.10701.2,Trinity_GG_22907_c0_g1_i4,blat.proc3829891.chain_2753	3	STRG.10701.1,STRG.10701.3,Trinity_GG_22907_c0_g1_i1,Trinity_GG_22907_c0_g1_i2,Trinity_GG_22907_c0_g1_i6,blat.proc3829891.chain_2754,blat.proc3829891.chain_2755,blat.proc3829891.chain_2756	8
scaffold_5	skipped_exon	11630266	11631086	-	asmbl_45799	none	blat.proc3829889.chain_2524	1	blat.proc3829889.chain_2525,blat.proc3829889.chain_2529	2
scaffold_18	alternate_exon	3032775	3032807	-	asmbl_19780	none	STRG.21135.2	1	STRG.21135.1,blat.proc3829897.chain_2046	2
scaffold_17	alt_acceptor	9089411	9089412	-	asmbl_19196,asmbl_19198,asmbl_19199	none	STRG.20530.2,STRG.20530.3,blat.proc3829897.chain_1482,blat.proc3829897.chain_1483	4	STRG.20530.1	1
scaffold_26	starts_in_intron	5662697	5662697	-	asmbl_34890	none	blat.proc3829901.chain_1441	1	STRG.28255.1,STRG.28255.2,STRG.28255.3,blat.proc3829901.chain_1436,blat.proc3829901.chain_1438,blat.proc3829901.chain_1439,blat.proc3829901.chain_1442,blat.proc3829901.chain_1443	8
scaffold_3	alternate_exon	8169432	8190196	-	asmbl_38967	none	blat.proc3829887.chain_3128,blat.proc3829887.chain_3130	2	blat.proc3829887.chain_3134,blat.proc3829887.chain_3136	2
scaffold_26	alternate_exon	5843335	5843451	+	asmbl_35569	none	STRG.28266.1,Trinity_GG_15631_c0_g1_i1,blat.proc3829885.chain_1295	3	Trinity_GG_15631_c1_g1_i1	1
scaffold_21	spliced_intron	255225	255467	-	asmbl_27313,asmbl_27314,asmbl_27315,asmbl_27316,asmbl_27317,asmbl_27318,asmbl_27319,asmbl_27320,asmbl_27322,asmbl_27323,asmbl_27324,asmbl_27325	none	STRG.23718.1,STRG.23718.2,STRG.23718.3,STRG.23718.4,STRG.23718.5,STRG.23718.6,STRG.23718.7,STRG.23718.8,blat.proc3829899.chain_781,blat.proc3829899.chain_782,blat.proc3829899.chain_785,blat.proc3829899.chain_786,blat.proc3829899.chain_787,blat.proc3829899.chain_788,blat.proc3829899.chain_791,blat.proc3829899.chain_792,blat.proc3829899.chain_793,blat.proc3829899.chain_794	18	Trinity_GG_30232_c0_g1_i2,blat.proc3829899.chain_784,blat.proc3829899.chain_789	3
scaffold_1	alt_donor	17918507	17918508	+	asmbl_2525	none	STRG.1258.3	1	STRG.1258.2	1
scaffold_4	starts_in_intron	13723421	13723421	-	asmbl_41745	none	STRG.4993.1,blat.proc3829889.chain_1045	2	STRG.4993.2,blat.proc3829889.chain_1047	2
scaffold_12	starts_in_intron	6420114	6420114	+	asmbl_8641	none	Trinity_GG_8129_c0_g1_i5,blat.proc3829877.chain_3206	2	STRG.14730.1,STRG.14730.2,STRG.14730.3,STRG.14730.4,blat.proc3829877.chain_3201,blat.proc3829877.chain_3203,blat.proc3829877.chain_3204,blat.proc3829877.chain_3205	8
scaffold_12	spliced_intron	16247233	16247319	+	asmbl_9119,asmbl_9121	none	STRG.15363.1,Trinity_GG_8439_c0_g1_i2,blat.proc3829879.chain_17	3	STRG.15363.3,Trinity_GG_8439_c0_g1_i1,blat.proc3829879.chain_16	3
scaffold_6	starts_in_intron	8305133	8305133	+	asmbl_47056	none	Trinity_GG_4216_c0_g1_i1,blat.proc3829875.chain_55	2	STRG.7704.1,blat.proc3829875.chain_54	2
scaffold_8	spliced_intron	18248240	18248534	-	asmbl_53540	none	STRG.10723.3	1	STRG.10723.4,blat.proc3829891.chain_2922,blat.proc3829891.chain_2923,blat.proc3829891.chain_2924	4
scaffold_5	alt_donor	14780492	14780493	+	asmbl_44633	none	STRG.6671.2,Trinity_GG_3635_c0_g1_i1,blat.proc3829873.chain_2786	3	STRG.6671.1	1
scaffold_2	alt_donor	18914611	18914612	-	asmbl_23850	none	STRG.2765.2,Trinity_GG_18545_c0_g1_i3,blat.proc3829887.chain_2600	3	STRG.2765.1,Trinity_GG_18545_c0_g1_i4,blat.proc3829887.chain_2598	3
scaffold_4	starts_in_intron	12524625	12524625	-	asmbl_41659	none	blat.proc3829889.chain_942	1	STRG.4884.1,Trinity_GG_19733_c0_g2_i1,blat.proc3829889.chain_944	3
scaffold_3	alt_acceptor	3244266	3244267	+	asmbl_39899,asmbl_39908	none	STRG.3087.1,blat.proc3829871.chain_3299,blat.proc3829871.chain_3307	3	STRG.3087.3	1
scaffold_2	alt_acceptor	15334057	15334058	+	asmbl_25054,asmbl_25056	none	STRG.2483.1,STRG.2483.3,Trinity_GG_1406_c0_g1_i1,Trinity_GG_1406_c0_g1_i2,Trinity_GG_1406_c0_g1_i3	5	STRG.2483.2,Trinity_GG_1406_c0_g1_i6	2
scaffold_8	alt_donor	7453222	7453223	-	asmbl_52900,asmbl_52902	none	STRG.10061.2,Trinity_GG_22618_c0_g1_i2,Trinity_GG_22618_c0_g1_i3,blat.proc3829891.chain_2199,blat.proc3829891.chain_2200	5	STRG.10061.1,blat.proc3829891.chain_2201	2
scaffold_10	spliced_intron	8319997	8320745	-	asmbl_3490	none	STRG.12583.2	1	STRG.12583.1	1
scaffold_13	retained_intron	393652	393774	-	asmbl_9306,asmbl_9307,asmbl_9308,asmbl_9309	none	Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i27,Trinity_GG_25691_c0_g1_i8,blat.proc3829895.chain_226,blat.proc3829895.chain_227,blat.proc3829895.chain_230,blat.proc3829895.chain_233	8	STRG.15428.1,STRG.15428.2,STRG.15428.3,Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i25,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_221,blat.proc3829895.chain_223,blat.proc3829895.chain_224,blat.proc3829895.chain_229	11
scaffold_9	spliced_intron	11877608	11877697	+	asmbl_54375	none	STRG.11501.2	1	STRG.11501.1,blat.proc3829877.chain_284	2
scaffold_15	alt_acceptor	4230209	4230210	+	asmbl_14072	none	blat.proc3829879.chain_2808	1	STRG.18160.1,STRG.18160.2,Trinity_GG_9974_c0_g1_i8,blat.proc3829879.chain_2806,blat.proc3829879.chain_2807,blat.proc3829879.chain_2809,blat.proc3829879.chain_2810,blat.proc3829879.chain_2811,blat.proc3829879.chain_2813,blat.proc3829879.chain_2814	10
scaffold_16	retained_exon	14546156	14546279	-	asmbl_16641	none	STRG.19822.3,blat.proc3829897.chain_788,blat.proc3829897.chain_789	3	STRG.19822.2	1
scaffold_17	retained_intron	10097780	10097808	+	asmbl_18300	none	Trinity_GG_11295_c0_g1_i1,Trinity_GG_11295_c0_g1_i2,blat.proc3829881.chain_1439	3	STRG.20617.1	1
scaffold_10	ends_in_intron	11108306	11108306	+	asmbl_4728	none	STRG.12772.2	1	STRG.12772.1,blat.proc3829877.chain_1339	2
scaffold_9	starts_in_intron	12270090	12270090	+	asmbl_54405	none	blat.proc3829877.chain_279	1	STRG.11539.1,blat.proc3829877.chain_276,blat.proc3829877.chain_278	3
scaffold_6	alt_donor	10147730	10147731	-	asmbl_48597	none	STRG.7840.1,blat.proc3829891.chain_78	2	blat.proc3829891.chain_77	1
scaffold_8	ends_in_intron	6019242	6019242	+	asmbl_51906	none	blat.proc3829875.chain_2558	1	blat.proc3829875.chain_2559,blat.proc3829875.chain_2560	2
scaffold_15	spliced_intron	15413602	15413826	+	asmbl_14727,asmbl_14728,asmbl_14731	none	STRG.18922.1,STRG.18922.2,blat.proc3829879.chain_3555	3	STRG.18922.3,STRG.18922.4,STRG.18922.5,blat.proc3829879.chain_3551,blat.proc3829879.chain_3552,blat.proc3829879.chain_3553,blat.proc3829879.chain_3556,blat.proc3829879.chain_3557	8
scaffold_4	retained_intron	4423769	4423970	-	asmbl_41250,asmbl_41252	none	STRG.4342.2,blat.proc3829889.chain_471	2	STRG.4342.1,STRG.4342.3,blat.proc3829889.chain_473	3
scaffold_10	retained_intron	9546459	9546855	+	asmbl_4677	none	Trinity_GG_7015_c1_g1_i1,blat.proc3829877.chain_1287	2	STRG.12692.3	1
scaffold_2	alt_donor	4680626	4680627	+	asmbl_24401	none	blat.proc3829871.chain_1886	1	STRG.1894.1,blat.proc3829871.chain_1884,blat.proc3829871.chain_1885	3
scaffold_12	alternate_exon	9231328	9231654	-	asmbl_7788,asmbl_7793,asmbl_7794,asmbl_7795,asmbl_7796,asmbl_7797,asmbl_7798,asmbl_7799	none	STRG.14912.2,STRG.14912.3,STRG.14912.4,STRG.14912.5,STRG.14912.6,STRG.14912.7,blat.proc3829893.chain_3304,blat.proc3829893.chain_3307	8	STRG.14912.8,blat.proc3829893.chain_3298,blat.proc3829893.chain_3301,blat.proc3829893.chain_3305	4
scaffold_7	spliced_intron	13205487	13205684	+	asmbl_51194,asmbl_51195,asmbl_51198	none	STRG.9419.1,STRG.9419.2,blat.proc3829875.chain_1851,blat.proc3829875.chain_1853	4	STRG.9419.3,blat.proc3829875.chain_1855,blat.proc3829875.chain_1856	3
scaffold_11	ends_in_intron	2770149	2770149	+	asmbl_5334	none	blat.proc3829877.chain_1880	1	STRG.13390.1	1
scaffold_1	alt_acceptor	858320	858321	-	asmbl_27	none	blat.proc3829885.chain_3700	1	STRG.43.1,STRG.43.2,blat.proc3829885.chain_3697,blat.proc3829885.chain_3698,blat.proc3829885.chain_3699	5
scaffold_6	alternate_exon	14107632	14107694	-	asmbl_48922	none	STRG.8164.1	1	STRG.8164.2	1
scaffold_25	alternate_exon	1906447	1907100	-	asmbl_34039,asmbl_34042	none	STRG.27182.3,STRG.27182.4	2	STRG.27182.2	1
scaffold_1	skipped_exon	3678408	3680406	+	asmbl_1626	none	STRG.237.3	1	STRG.237.1,STRG.237.2,blat.proc3829871.chain_291,blat.proc3829871.chain_293	4
scaffold_11	alt_donor	7924431	7924432	+	asmbl_5663	none	STRG.13793.3,Trinity_GG_7594_c0_g1_i4,blat.proc3829877.chain_2266	3	STRG.13793.1,Trinity_GG_7594_c0_g1_i3,blat.proc3829877.chain_2265	3
scaffold_6	alt_donor	1752113	1752114	-	asmbl_48059,asmbl_48064,asmbl_48066	none	STRG.7224.3,STRG.7224.6,blat.proc3829889.chain_3172,blat.proc3829889.chain_3176	4	STRG.7224.1,STRG.7224.4,STRG.7224.5,STRG.7224.7,STRG.7224.8,blat.proc3829889.chain_3170,blat.proc3829889.chain_3171,blat.proc3829889.chain_3174,blat.proc3829889.chain_3175	9
scaffold_11	retained_intron	1985477	1985515	+	asmbl_5309	none	blat.proc3829893.chain_1765	1	STRG.13350.1	1
scaffold_9	alternate_exon	13892560	13892765	-	asmbl_55417,asmbl_55418	none	STRG.11643.1,STRG.11643.3	2	STRG.11643.2,blat.proc3829893.chain_14	2
scaffold_1	spliced_intron	12953093	12953198	-	asmbl_790	none	STRG.920.2,blat.proc3829887.chain_815	2	STRG.920.1,STRG.920.3,blat.proc3829887.chain_814,blat.proc3829887.chain_816	4
scaffold_6	spliced_intron	12653940	12654089	+	asmbl_47364	none	STRG.8019.1,blat.proc3829875.chain_366	2	Trinity_GG_4365_c0_g1_i3,blat.proc3829875.chain_368	2
scaffold_3	starts_in_intron	5008509	5008509	+	asmbl_40018	none	blat.proc3829871.chain_3368	1	STRG.3199.1,STRG.3199.2,STRG.3199.4,blat.proc3829871.chain_3366	4
scaffold_1	retained_exon	13634836	13634919	+	asmbl_2294	none	STRG.978.1	1	STRG.978.3,blat.proc3829871.chain_1056	2
scaffold_8	spliced_intron	11760968	11761396	-	asmbl_53162	none	STRG.10372.3	1	STRG.10372.1,blat.proc3829891.chain_2447	2
scaffold_21	spliced_intron	730676	730999	+	asmbl_28316	none	STRG.23754.4	1	STRG.23754.3,Trinity_GG_13126_c0_g3_i1,blat.proc3829883.chain_855	3
scaffold_17	spliced_intron	2535887	2536718	-	asmbl_18801,asmbl_18804,asmbl_18805,asmbl_18806	none	STRG.20035.1,STRG.20035.3,blat.proc3829897.chain_984,blat.proc3829897.chain_987,blat.proc3829897.chain_988	5	STRG.20035.2,blat.proc3829897.chain_985	2
scaffold_15	retained_exon	4983131	4983625	-	asmbl_15188	none	STRG.18197.4	1	STRG.18197.1,STRG.18197.3,blat.proc3829895.chain_2985,blat.proc3829895.chain_2986	4
scaffold_26	retained_intron	4155586	4155680	+	asmbl_35406	none	STRG.28105.2	1	STRG.28105.1,blat.proc3829885.chain_1107	2
scaffold_23	starts_in_intron	10826399	10826399	-	asmbl_31876	none	blat.proc3829899.chain_3326	1	STRG.26253.1,STRG.26253.2,blat.proc3829899.chain_3325	3
scaffold_7	skipped_exon	7244469	7246065	+	asmbl_50799	none	STRG.8972.2,blat.proc3829875.chain_1408	2	STRG.8972.1,blat.proc3829875.chain_1409	2
scaffold_19	ends_in_intron	12075176	12075176	+	asmbl_22544	none	blat.proc3829881.chain_3417	1	STRG.22520.1,blat.proc3829881.chain_3418	2
scaffold_4	ends_in_intron	16578276	16578276	+	asmbl_43313,asmbl_43314	none	blat.proc3829873.chain_1498,blat.proc3829873.chain_1500	2	STRG.5238.1,STRG.5238.2,STRG.5238.3,blat.proc3829873.chain_1499,blat.proc3829873.chain_1501	5
scaffold_22	alternate_exon	7774764	7774825	+	asmbl_29510	none	STRG.25098.1	1	STRG.25098.2,blat.proc3829883.chain_2171	2
scaffold_11	spliced_intron	257277	257296	+	asmbl_5243	none	STRG.13247.1	1	Trinity_GG_7288_c0_g1_i1,blat.proc3829877.chain_1771	2
scaffold_10	alternate_exon	7801046	7804599	-	asmbl_3471	none	STRG.12559.1,blat.proc3829893.chain_1039	2	STRG.12559.2,STRG.12559.3,blat.proc3829893.chain_1040	3
scaffold_14	alt_donor	15565514	15565515	+	asmbl_12606	none	blat.proc3829879.chain_2468	1	STRG.17784.2,STRG.17784.3	2
scaffold_10	alt_donor	6413515	6413516	-	asmbl_3369	none	blat.proc3829893.chain_850	1	STRG.12460.1	1
scaffold_2	alt_acceptor	4787952	4787953	+	asmbl_24403,asmbl_24404,asmbl_24405,asmbl_24406	none	STRG.1897.1,STRG.1897.3,STRG.1897.4,blat.proc3829871.chain_1851,blat.proc3829871.chain_1852,blat.proc3829871.chain_1853,blat.proc3829871.chain_1854	7	STRG.1897.2,STRG.1897.5	2
scaffold_10	spliced_intron	976769	976863	-	asmbl_2936,asmbl_2937	none	STRG.11970.1,STRG.11970.2,Trinity_GG_23642_c0_g1_i1,Trinity_GG_23642_c0_g1_i4	4	Trinity_GG_23642_c0_g1_i2	1
scaffold_27	retained_intron	4186686	4186765	+	asmbl_36221	none	blat.proc3829885.chain_1924	1	STRG.28856.1,blat.proc3829885.chain_1925	2
scaffold_12	alternate_exon	4214990	4214996	+	asmbl_8548,asmbl_8550	none	STRG.14588.1,blat.proc3829877.chain_3115,blat.proc3829877.chain_3117	3	STRG.14588.2,STRG.14588.3	2
scaffold_23	skipped_exon	7690759	7691956	+	asmbl_31019	none	STRG.26062.1	1	STRG.26062.2	1
scaffold_16	starts_in_intron	10417517	10417517	+	asmbl_17329	none	Trinity_GG_10714_c0_g1_i1,blat.proc3829881.chain_437	2	STRG.19599.1,Trinity_GG_10714_c0_g1_i2,blat.proc3829881.chain_436	3
scaffold_14	starts_in_intron	11568709	11568709	-	asmbl_13478	none	blat.proc3829895.chain_2198	1	STRG.17478.1,STRG.17478.2,blat.proc3829895.chain_2197	3
scaffold_17	spliced_intron	8318341	8318617	+	asmbl_18098,asmbl_18099,asmbl_18100	none	blat.proc3829881.chain_1250,blat.proc3829881.chain_1251,blat.proc3829881.chain_1253	3	blat.proc3829881.chain_1249	1
scaffold_1	starts_in_intron	22136437	22136437	+	asmbl_2674	none	blat.proc3829871.chain_1514	1	STRG.1479.1,STRG.1479.2,STRG.1479.3	3
scaffold_17	alt_donor	2631018	2631019	+	asmbl_17799,asmbl_17800,asmbl_17801,asmbl_17806	none	STRG.20044.2,STRG.20044.3,STRG.20044.4,Trinity_GG_10982_c0_g1_i2,Trinity_GG_10982_c0_g1_i4,blat.proc3829881.chain_875,blat.proc3829881.chain_876,blat.proc3829881.chain_878	8	STRG.20044.1	1
scaffold_11	spliced_intron	13035748	13036295	-	asmbl_7095	none	blat.proc3829893.chain_2576	1	STRG.14169.2,STRG.14169.3,Trinity_GG_24917_c0_g2_i1,blat.proc3829893.chain_2578	4
scaffold_19	alt_acceptor	678973	678974	+	asmbl_22003	none	blat.proc3829881.chain_2823	1	STRG.21838.1,blat.proc3829881.chain_2826	2
scaffold_23	spliced_intron	2585219	2585676	-	asmbl_31460,asmbl_31461,asmbl_31462	none	STRG.25705.1,STRG.25705.2,STRG.25705.5,Trinity_GG_31351_c1_g1_i4,blat.proc3829899.chain_2749,blat.proc3829899.chain_2751,blat.proc3829899.chain_2752	7	Trinity_GG_31351_c1_g1_i6	1
scaffold_11	skipped_exon	8476825	8478805	+	asmbl_5746	none	STRG.13851.1,Trinity_GG_7647_c0_g1_i5,blat.proc3829877.chain_2362	3	STRG.13851.2,Trinity_GG_7647_c0_g1_i2,blat.proc3829877.chain_2360	3
scaffold_17	retained_intron	7038519	7038718	-	asmbl_19065	none	blat.proc3829897.chain_1267	1	STRG.20356.1,blat.proc3829897.chain_1266	2
scaffold_8	retained_intron	115861	115888	+	asmbl_51640	none	STRG.9702.2	1	STRG.9702.1	1
scaffold_1	spliced_intron	854980	855130	+	asmbl_1420	none	STRG.42.6,Trinity_GG_38_c0_g1_i9,blat.proc3829871.chain_70	3	STRG.42.4,STRG.42.5	2
scaffold_6	alternate_exon	5429074	5433751	+	asmbl_46887	none	STRG.7507.1,blat.proc3829873.chain_3622	2	STRG.7507.3,Trinity_GG_4108_c0_g1_i2,Trinity_GG_4108_c0_g1_i5,blat.proc3829873.chain_3621,blat.proc3829873.chain_3624	5
scaffold_7	skipped_exon	9767491	9767994	-	asmbl_49874	none	STRG.9157.1	1	STRG.9157.2,blat.proc3829891.chain_1375	2
scaffold_8	skipped_exon	16397415	16398401	-	asmbl_53394	none	blat.proc3829891.chain_2683	1	STRG.10619.2,blat.proc3829891.chain_2687	2
scaffold_2	alt_acceptor	481943	481944	-	asmbl_22833	none	STRG.1533.2	1	STRG.1533.1,STRG.1533.3,blat.proc3829887.chain_1416	3
scaffold_1	starts_in_intron	12775584	12775584	+	asmbl_2240	none	STRG.895.1,blat.proc3829871.chain_999	2	blat.proc3829871.chain_998	1
scaffold_19	skipped_exon	11483212	11483614	-	asmbl_21614,asmbl_21619	none	STRG.22477.3,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184	3	blat.proc3829897.chain_3187,blat.proc3829897.chain_3192	2
scaffold_11	retained_intron	8072873	8072982	-	asmbl_6802,asmbl_6812	none	Trinity_GG_24711_c0_g1_i17,Trinity_GG_24711_c0_g1_i8,blat.proc3829893.chain_2204,blat.proc3829893.chain_2205	4	STRG.13802.1,STRG.13802.2,Trinity_GG_24711_c0_g1_i18,Trinity_GG_24711_c0_g1_i3,Trinity_GG_24711_c0_g1_i9,blat.proc3829893.chain_2197,blat.proc3829893.chain_2199,blat.proc3829893.chain_2206,blat.proc3829893.chain_2209,blat.proc3829893.chain_2211	10
scaffold_4	alt_donor	5830104	5830105	+	asmbl_42701,asmbl_42702	none	STRG.4481.2,STRG.4481.3	2	STRG.4481.1	1
scaffold_4	alt_donor	1332445	1332446	-	asmbl_41109,asmbl_41111	none	STRG.4173.3,STRG.4173.5	2	STRG.4173.2,STRG.4173.4,blat.proc3829889.chain_299,blat.proc3829889.chain_300,blat.proc3829889.chain_301,blat.proc3829889.chain_302	6
scaffold_13	retained_intron	15814218	15814405	+	asmbl_11519	none	blat.proc3829879.chain_1312	1	STRG.16612.1	1
scaffold_3	alternate_exon	6659750	6659859	+	asmbl_40072	none	blat.proc3829871.chain_3457	1	STRG.3290.1,STRG.3290.2,STRG.3290.4,STRG.3290.5,Trinity_GG_1861_c0_g1_i10,blat.proc3829871.chain_3459,blat.proc3829871.chain_3460,blat.proc3829871.chain_3461,blat.proc3829871.chain_3464,blat.proc3829871.chain_3468,blat.proc3829871.chain_3469,blat.proc3829871.chain_3471	12
scaffold_26	starts_in_intron	4453707	4453707	+	asmbl_35433	none	blat.proc3829885.chain_1102	1	STRG.28146.1,blat.proc3829885.chain_1101	2
scaffold_21	alternate_exon	3152446	3156165	+	asmbl_28479,asmbl_28483,asmbl_28484	none	STRG.23945.1,blat.proc3829883.chain_1052,blat.proc3829883.chain_1053,blat.proc3829883.chain_1056,blat.proc3829899.chain_942	5	STRG.23945.5,blat.proc3829883.chain_1064	2
scaffold_9	retained_intron	12476191	12476332	+	asmbl_54419	none	STRG.11555.2,blat.proc3829877.chain_345	2	blat.proc3829877.chain_343,blat.proc3829877.chain_344	2
scaffold_11	retained_exon	1571883	1571987	+	asmbl_5293	none	blat.proc3829893.chain_1798	1	blat.proc3829893.chain_1799	1
scaffold_7	spliced_intron	3953206	3953955	-	asmbl_49643,asmbl_49644,asmbl_49645,asmbl_49646,asmbl_49647,asmbl_49648,asmbl_49649	none	STRG.8791.1,STRG.8791.2,blat.proc3829891.chain_1086,blat.proc3829891.chain_1087,blat.proc3829891.chain_1088,blat.proc3829891.chain_1089,blat.proc3829891.chain_1090,blat.proc3829891.chain_1091,blat.proc3829891.chain_1092	9	blat.proc3829891.chain_1093	1
scaffold_4	spliced_intron	16315868	16316019	+	asmbl_43299	none	STRG.5205.3,blat.proc3829873.chain_1510	2	STRG.5205.2,blat.proc3829873.chain_1512	2
scaffold_14	alt_acceptor	15693741	15693742	-	asmbl_13721	none	STRG.17796.2	1	STRG.17796.3,blat.proc3829895.chain_2522	2
scaffold_24	starts_in_intron	10779251	10779251	-	asmbl_33213	none	blat.proc3829901.chain_295	1	STRG.27021.1,blat.proc3829901.chain_292,blat.proc3829901.chain_294,blat.proc3829901.chain_296	4
scaffold_26	spliced_intron	4590766	4590793	-	asmbl_34846	none	STRG.28165.1	1	STRG.28165.2,Trinity_GG_32760_c0_g1_i2,Trinity_GG_32760_c0_g1_i3	3
scaffold_15	retained_intron	5453657	5453810	-	asmbl_15219,asmbl_15225	none	Trinity_GG_27252_c0_g1_i1,blat.proc3829895.chain_2956,blat.proc3829895.chain_2958	3	STRG.18219.1,STRG.18219.2,STRG.18219.3,blat.proc3829895.chain_2952,blat.proc3829895.chain_2953,blat.proc3829895.chain_2955	6
scaffold_9	spliced_intron	16628131	16628261	-	asmbl_55559,asmbl_55560	none	STRG.11794.1,STRG.11794.3	2	STRG.11794.2,STRG.11794.4,blat.proc3829893.chain_174	3
scaffold_15	spliced_intron	15412571	15412679	+	asmbl_14729,asmbl_14737	none	STRG.18922.4,STRG.18922.6,blat.proc3829879.chain_3552	3	STRG.18922.1,STRG.18922.2,STRG.18922.3,STRG.18922.5,blat.proc3829879.chain_3550,blat.proc3829879.chain_3551,blat.proc3829879.chain_3553,blat.proc3829879.chain_3555,blat.proc3829879.chain_3556,blat.proc3829879.chain_3557	10
scaffold_15	spliced_intron	4817650	4817737	-	asmbl_15170	none	STRG.18192.1,blat.proc3829895.chain_2918	2	blat.proc3829895.chain_2920	1
scaffold_13	spliced_intron	2506963	2507489	+	asmbl_10604,asmbl_10606	none	STRG.15546.1,Trinity_GG_8559_c0_g1_i5,blat.proc3829879.chain_268	3	STRG.15546.3,Trinity_GG_8559_c0_g1_i3,Trinity_GG_8559_c0_g1_i4,blat.proc3829879.chain_269,blat.proc3829879.chain_270	5
scaffold_87	alt_acceptor	15330	15331	+	asmbl_53704	none	STRG.30139.6	1	STRG.30139.3,STRG.30139.5	2
scaffold_18	ends_in_intron	1897409	1897409	-	asmbl_19695,asmbl_19700	none	blat.proc3829897.chain_1892,blat.proc3829897.chain_1900	2	STRG.21072.10,STRG.21072.4,STRG.21072.6,STRG.21072.7,STRG.21072.9,blat.proc3829897.chain_1890,blat.proc3829897.chain_1897,blat.proc3829897.chain_1898,blat.proc3829897.chain_1899,blat.proc3829897.chain_1901,blat.proc3829897.chain_1902	11
scaffold_19	ends_in_intron	12476985	12476985	-	asmbl_21699	none	STRG.22565.3,Trinity_GG_29573_c1_g1_i5,blat.proc3829897.chain_3300	3	STRG.22565.1,Trinity_GG_29573_c1_g1_i6,blat.proc3829897.chain_3299,blat.proc3829897.chain_3301	4
scaffold_23	starts_in_intron	6622504	6622504	+	asmbl_30924	none	STRG.25983.3,blat.proc3829883.chain_2873	2	STRG.25983.1,STRG.25983.2,blat.proc3829883.chain_2870,blat.proc3829883.chain_2874	4
scaffold_2	alt_acceptor	7469630	7469631	-	asmbl_23283,asmbl_23286	none	STRG.2075.3,STRG.2075.4,Trinity_GG_18127_c0_g1_i18,blat.proc3829887.chain_1893	4	Trinity_GG_18127_c0_g1_i23,Trinity_GG_18127_c0_g1_i8,blat.proc3829887.chain_1889,blat.proc3829887.chain_1895	4
scaffold_19	alt_acceptor	12200137	12200138	-	asmbl_21678	none	STRG.22536.1,Trinity_GG_29490_c0_g1_i2	2	STRG.22536.2	1
scaffold_23	alt_acceptor	10739089	10739090	-	asmbl_31866,asmbl_31867	none	STRG.26245.2,blat.proc3829899.chain_3278	2	STRG.26245.1,blat.proc3829899.chain_3277	2
scaffold_27	starts_in_intron	4807067	4807067	+	asmbl_36277	none	STRG.28907.2	1	STRG.28907.1,blat.proc3829885.chain_2034	2
scaffold_2	retained_intron	9791919	9792309	+	asmbl_24723,asmbl_24724	none	blat.proc3829871.chain_2219,blat.proc3829871.chain_2220	2	STRG.2185.1,Trinity_GG_1191_c0_g1_i6,blat.proc3829871.chain_2216,blat.proc3829871.chain_2217,blat.proc3829871.chain_2218,blat.proc3829871.chain_2221,blat.proc3829871.chain_2222	7
scaffold_3	starts_in_intron	801054	801054	-	asmbl_38632,asmbl_38633	none	STRG.2910.2,STRG.2910.4,Trinity_GG_18623_c1_g1_i1,blat.proc3829887.chain_2743	4	STRG.2910.1,blat.proc3829887.chain_2740	2
scaffold_4	retained_exon	10949926	10949958	+	asmbl_43020	none	STRG.4816.2	1	STRG.4816.1,blat.proc3829873.chain_1178	2
scaffold_10	ends_in_intron	334489	334489	-	asmbl_2853	none	STRG.11909.3,blat.proc3829893.chain_342	2	STRG.11909.1,STRG.11909.2,blat.proc3829893.chain_340,blat.proc3829893.chain_341	4
scaffold_3	ends_in_intron	3323494	3323494	-	asmbl_38729	none	Trinity_GG_18652_c0_g1_i5,blat.proc3829887.chain_2791	2	STRG.3076.1,STRG.3076.2,blat.proc3829887.chain_2788,blat.proc3829887.chain_2789,blat.proc3829887.chain_2790	5
scaffold_9	alt_donor	14818072	14818073	-	asmbl_55460,asmbl_55461,asmbl_55468	none	STRG.11693.1,STRG.11693.4,blat.proc3829893.chain_10,blat.proc3829893.chain_7,blat.proc3829893.chain_8	5	STRG.11693.3,STRG.11693.5,STRG.11693.6,blat.proc3829893.chain_3,blat.proc3829893.chain_6	5
scaffold_15	ends_in_intron	10770633	10770633	+	asmbl_14409	none	blat.proc3829879.chain_3160	1	STRG.18552.3,STRG.18552.5,STRG.18552.6,blat.proc3829879.chain_3157,blat.proc3829879.chain_3159,blat.proc3829879.chain_3161,blat.proc3829879.chain_3162	7
scaffold_28	alt_acceptor	7831989	7831990	-	asmbl_37748	none	STRG.29832.2,blat.proc3829901.chain_2955	2	STRG.29832.1,blat.proc3829901.chain_2956	2
scaffold_7	spliced_intron	12410566	12410770	+	asmbl_51134	none	STRG.9332.1,blat.proc3829875.chain_1782	2	blat.proc3829875.chain_1783	1
scaffold_3	starts_in_intron	5262993	5262993	-	asmbl_38798	none	Trinity_GG_18760_c0_g1_i5,blat.proc3829887.chain_2959	2	STRG.3218.1,blat.proc3829887.chain_2955	2
scaffold_15	retained_intron	8364853	8364968	-	asmbl_15359	none	Trinity_GG_27360_c0_g1_i6,blat.proc3829895.chain_3160	2	STRG.18387.2,blat.proc3829895.chain_3158,blat.proc3829895.chain_3159	3
scaffold_13	alternate_exon	8801991	8809210	-	asmbl_9945	none	blat.proc3829895.chain_943	1	STRG.16137.5,blat.proc3829895.chain_936	2
scaffold_10	ends_in_intron	635744	635744	-	asmbl_2894	none	Trinity_GG_23652_c0_g1_i4,blat.proc3829893.chain_380	2	STRG.11933.1,blat.proc3829893.chain_378	2
scaffold_28	alt_acceptor	5581920	5581921	+	asmbl_38287	none	STRG.29670.2,Trinity_GG_16454_c0_g1_i5,blat.proc3829885.chain_2796	3	STRG.29670.1,Trinity_GG_16454_c0_g1_i4,Trinity_GG_16454_c0_g1_i6,blat.proc3829885.chain_2793,blat.proc3829885.chain_2797	5
scaffold_5	retained_intron	9085614	9085705	+	asmbl_44263	none	blat.proc3829873.chain_2421	1	STRG.6237.1,STRG.6237.2,STRG.6237.3,STRG.6237.4,STRG.6237.5,blat.proc3829873.chain_2418,blat.proc3829873.chain_2419,blat.proc3829873.chain_2422,blat.proc3829873.chain_2423,blat.proc3829873.chain_2424,blat.proc3829873.chain_2426	11
scaffold_2	starts_in_intron	14198493	14198493	-	asmbl_23588	none	STRG.2411.2,blat.proc3829887.chain_2300	2	STRG.2411.1,STRG.2411.3,STRG.2411.4,blat.proc3829887.chain_2297,blat.proc3829887.chain_2298	5
scaffold_5	starts_in_intron	8086587	8086587	-	asmbl_45580	none	blat.proc3829889.chain_2208	1	STRG.6165.1,blat.proc3829889.chain_2207	2
scaffold_5	alt_acceptor	6587657	6587658	-	asmbl_45492	none	blat.proc3829889.chain_2135	1	Trinity_GG_20417_c0_g1_i5,blat.proc3829889.chain_2132,blat.proc3829889.chain_2133,blat.proc3829889.chain_2136	4
scaffold_19	retained_intron	11485415	11485915	-	asmbl_21620	none	blat.proc3829897.chain_3190	1	STRG.22477.1,STRG.22477.3,blat.proc3829897.chain_3181,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184,blat.proc3829897.chain_3187,blat.proc3829897.chain_3192,blat.proc3829897.chain_3193	8
scaffold_27	spliced_intron	6258368	6258607	+	asmbl_36349	none	STRG.28995.2,blat.proc3829885.chain_2097	2	STRG.28995.1,blat.proc3829885.chain_2098	2
scaffold_22	alt_acceptor	11544173	11544174	+	asmbl_29695	none	STRG.25485.1	1	STRG.25485.3	1
scaffold_16	retained_exon	7227816	7228463	-	asmbl_16344,asmbl_16347	none	STRG.19382.1,STRG.19382.3	2	STRG.19382.6,STRG.19382.7	2
scaffold_5	retained_exon	6289221	6289313	+	asmbl_44080	none	STRG.6032.2	1	STRG.6032.1,Trinity_GG_3287_c0_g1_i1,blat.proc3829873.chain_2167	3
scaffold_17	retained_intron	7006596	7009068	-	asmbl_19059	none	blat.proc3829897.chain_1272,blat.proc3829897.chain_1275	2	STRG.20351.1,STRG.20351.2,blat.proc3829897.chain_1273,blat.proc3829897.chain_1274	4
scaffold_11	spliced_intron	17336336	17336476	+	asmbl_6194	none	STRG.14380.1,Trinity_GG_7931_c0_g1_i1,blat.proc3829877.chain_2875	3	Trinity_GG_7931_c0_g1_i2,blat.proc3829877.chain_2876	2
scaffold_5	alt_donor	18993029	18993030	+	asmbl_44953	none	STRG.7007.1,Trinity_GG_3838_c1_g1_i2,blat.proc3829873.chain_3126	3	STRG.7007.2,Trinity_GG_3838_c1_g1_i1,blat.proc3829873.chain_3125	3
scaffold_2	skipped_exon	15267438	15267920	+	asmbl_25020,asmbl_25021,asmbl_25022,asmbl_25026,asmbl_25027,asmbl_25028,asmbl_25030	none	STRG.2480.1,STRG.2480.2,Trinity_GG_1353_c0_g1_i14,blat.proc3829871.chain_2514,blat.proc3829871.chain_2515,blat.proc3829871.chain_2518,blat.proc3829871.chain_2519,blat.proc3829871.chain_2520,blat.proc3829871.chain_2521,blat.proc3829871.chain_2523	10	STRG.2480.3,blat.proc3829871.chain_2522	2
scaffold_15	spliced_intron	15857347	15857984	+	asmbl_14772	none	STRG.18964.2,Trinity_GG_10383_c0_g1_i8,blat.proc3829879.chain_3544	3	Trinity_GG_10383_c0_g1_i2,blat.proc3829879.chain_3541,blat.proc3829879.chain_3545	3
scaffold_13	alt_acceptor	11946156	11946157	-	asmbl_10075	none	STRG.16316.2,Trinity_GG_26156_c0_g1_i1,blat.proc3829895.chain_1070,blat.proc3829895.chain_1071	4	STRG.16316.1,Trinity_GG_26156_c0_g1_i3,blat.proc3829895.chain_1072	3
scaffold_5	spliced_intron	10974515	10975047	+	asmbl_44387	none	STRG.6369.1,blat.proc3829873.chain_2459	2	Trinity_GG_3441_c0_g1_i3	1
scaffold_1	alt_acceptor	863555	863556	+	asmbl_1428	none	STRG.37.2,Trinity_GG_35_c0_g1_i4,blat.proc3829871.chain_59	3	STRG.37.1,Trinity_GG_35_c0_g1_i2,blat.proc3829871.chain_61	3
scaffold_6	alt_acceptor	12412179	12412180	-	asmbl_48738,asmbl_48740	none	STRG.7990.1,STRG.7990.3,blat.proc3829891.chain_294	3	STRG.7990.2,STRG.7990.4,blat.proc3829891.chain_292,blat.proc3829891.chain_293	4
scaffold_6	alt_acceptor	12976821	12976822	+	asmbl_47397	none	STRG.8050.3,blat.proc3829875.chain_459	2	STRG.8050.1,STRG.8050.2,blat.proc3829875.chain_460,blat.proc3829875.chain_461,blat.proc3829875.chain_462	5
scaffold_6	alternate_exon	15471342	15471517	-	asmbl_49010	none	STRG.8290.1,blat.proc3829891.chain_580	2	STRG.8290.2,blat.proc3829891.chain_581	2
scaffold_21	retained_exon	10004994	10005017	-	asmbl_28023	none	STRG.24448.1,blat.proc3829899.chain_1510	2	STRG.24448.2,blat.proc3829899.chain_1511	2
scaffold_12	retained_intron	15094938	15096253	-	asmbl_8179	none	STRG.15303.1,Trinity_GG_25549_c1_g1_i1,blat.proc3829893.chain_3694	3	Trinity_GG_25549_c1_g1_i5,blat.proc3829893.chain_3693	2
scaffold_28	spliced_intron	233644	233732	+	asmbl_37949,asmbl_37950,asmbl_37951,asmbl_37952	none	STRG.29233.1,STRG.29233.2,blat.proc3829885.chain_2388,blat.proc3829885.chain_2391	4	STRG.29233.3,blat.proc3829885.chain_2387	2
scaffold_9	alternate_exon	2796321	2797004	+	asmbl_53843	none	STRG.10912.3,Trinity_GG_6054_c0_g1_i6,blat.proc3829875.chain_3371	3	STRG.10912.1,STRG.10912.2,Trinity_GG_6054_c0_g1_i2,Trinity_GG_6054_c0_g1_i7,blat.proc3829875.chain_3367,blat.proc3829875.chain_3369,blat.proc3829875.chain_3372	7
scaffold_17	alt_donor	4186771	4186772	-	asmbl_18886	none	STRG.20157.3	1	STRG.20157.1,blat.proc3829897.chain_1126	2
scaffold_14	alternate_exon	11077372	11077406	-	asmbl_13426	none	STRG.17431.3,blat.proc3829895.chain_2140	2	STRG.17431.2	1
scaffold_7	ends_in_intron	5233987	5233987	+	asmbl_50685	none	blat.proc3829875.chain_1295	1	STRG.8853.1,blat.proc3829875.chain_1294,blat.proc3829875.chain_1296	3
scaffold_1	retained_exon	978085	978183	-	asmbl_43	none	STRG.58.2	1	STRG.58.1,Trinity_GG_17051_c0_g1_i1,blat.proc3829885.chain_3724	3
scaffold_7	starts_in_intron	12348830	12348830	+	asmbl_51123	none	STRG.9317.3,Trinity_GG_5177_c0_g1_i2,blat.proc3829875.chain_1784	3	STRG.9317.1,STRG.9317.2,blat.proc3829875.chain_1785	3
scaffold_3	starts_in_intron	1257943	1257943	+	asmbl_39794	none	Trinity_GG_1630_c0_g1_i1,blat.proc3829871.chain_3050	2	STRG.2948.1	1
scaffold_3	alt_donor	7917893	7917894	-	asmbl_38949	none	STRG.3375.4	1	STRG.3375.1,STRG.3375.2,STRG.3375.3,STRG.3375.5,blat.proc3829887.chain_3073,blat.proc3829887.chain_3074	6
scaffold_21	spliced_intron	5170787	5170985	-	asmbl_27646,asmbl_27649,asmbl_27650,asmbl_27651	none	STRG.24038.1,blat.proc3829899.chain_1128,blat.proc3829899.chain_1129,blat.proc3829899.chain_1132,blat.proc3829899.chain_1134	5	blat.proc3829899.chain_1131	1
scaffold_14	alt_acceptor	9294819	9294820	-	asmbl_13352,asmbl_13354,asmbl_13356,asmbl_13357,asmbl_13359	none	STRG.17324.1,STRG.17324.2,blat.proc3829895.chain_2044,blat.proc3829895.chain_2046,blat.proc3829895.chain_2047,blat.proc3829895.chain_2048,blat.proc3829895.chain_2050,blat.proc3829895.chain_2051,blat.proc3829895.chain_2052	9	STRG.17324.3,STRG.17324.4,blat.proc3829895.chain_2049	3
scaffold_7	ends_in_intron	15248322	15248322	+	asmbl_51301	none	blat.proc3829875.chain_2037	1	STRG.9529.1,STRG.9529.2,STRG.9529.3,blat.proc3829875.chain_2038,blat.proc3829875.chain_2039,blat.proc3829875.chain_2040,blat.proc3829875.chain_2041	7
scaffold_5	alternate_exon	5738079	5739398	+	asmbl_44030	none	STRG.5984.1	1	STRG.5984.3,blat.proc3829873.chain_2049	2
scaffold_18	ends_in_intron	2831546	2831546	+	asmbl_20456,asmbl_20457	none	blat.proc3829881.chain_1918,blat.proc3829881.chain_1920	2	STRG.21133.1,STRG.21133.2,blat.proc3829881.chain_1915,blat.proc3829881.chain_1916,blat.proc3829881.chain_1923	5
scaffold_6	starts_in_intron	12626949	12626949	-	asmbl_48772	none	Trinity_GG_21546_c0_g1_i6,blat.proc3829891.chain_258	2	STRG.8013.1,STRG.8013.2,Trinity_GG_21546_c0_g1_i1,Trinity_GG_21546_c0_g1_i2,blat.proc3829891.chain_252,blat.proc3829891.chain_253,blat.proc3829891.chain_254,blat.proc3829891.chain_255,blat.proc3829891.chain_256,blat.proc3829891.chain_257	10
scaffold_2	retained_intron	898896	899000	+	asmbl_24164,asmbl_24169	none	Trinity_GG_900_c0_g1_i3,Trinity_GG_900_c0_g1_i5,Trinity_GG_900_c0_g1_i6,blat.proc3829871.chain_1640	4	STRG.1568.1,STRG.1568.2,Trinity_GG_900_c0_g1_i4,blat.proc3829871.chain_1642,blat.proc3829871.chain_1643,blat.proc3829871.chain_1644	6
scaffold_15	alt_acceptor	15447483	15447484	+	asmbl_14738,asmbl_14742,asmbl_14744,asmbl_14746	none	STRG.18933.1,Trinity_GG_10389_c0_g1_i2,Trinity_GG_10389_c0_g1_i3,Trinity_GG_10389_c0_g1_i7,blat.proc3829879.chain_3560,blat.proc3829879.chain_3561,blat.proc3829879.chain_3564,blat.proc3829879.chain_3565	8	STRG.18933.2	1
scaffold_21	spliced_intron	11303261	11303360	+	asmbl_28928	none	STRG.24590.1	1	blat.proc3829883.chain_1611	1
scaffold_22	alt_acceptor	10237272	10237273	-	asmbl_30358	none	STRG.25350.2	1	STRG.25350.1,STRG.25350.3,blat.proc3829899.chain_2420,blat.proc3829899.chain_2421	4
scaffold_15	alternate_exon	670912	673436	-	asmbl_14953	none	blat.proc3829895.chain_2552	1	blat.proc3829895.chain_2554	1
scaffold_13	retained_intron	13570435	13570458	+	asmbl_11376	none	Trinity_GG_9001_c0_g1_i1,Trinity_GG_9001_c0_g1_i2,blat.proc3829879.chain_1119	3	blat.proc3829879.chain_1120	1
scaffold_21	retained_intron	5549480	5549620	+	asmbl_28597	none	Trinity_GG_13347_c0_g1_i4,blat.proc3829883.chain_1237	2	STRG.24076.1,STRG.24076.2,blat.proc3829883.chain_1234,blat.proc3829883.chain_1235,blat.proc3829883.chain_1236	5
scaffold_21	alt_donor	994280	994281	-	asmbl_27395	none	STRG.23770.2	1	STRG.23770.1,Trinity_GG_30257_c0_g1_i2,Trinity_GG_30257_c0_g1_i3,blat.proc3829899.chain_844,blat.proc3829899.chain_845	5
scaffold_20	spliced_intron	7858103	7858245	-	asmbl_26853,asmbl_26854,asmbl_26855	none	STRG.23322.1,STRG.23322.2,STRG.23322.3,blat.proc3829899.chain_376,blat.proc3829899.chain_378	5	STRG.23322.4,blat.proc3829899.chain_377	2
scaffold_19	skipped_exon	10850753	10852820	-	asmbl_21567	none	STRG.22416.2,Trinity_GG_29441_c0_g1_i3,blat.proc3829897.chain_3024	3	STRG.22416.1	1
scaffold_6	starts_in_intron	3573223	3573223	-	asmbl_48218	none	blat.proc3829889.chain_3303	1	STRG.7366.1,blat.proc3829889.chain_3302	2
scaffold_5	starts_in_intron	12660316	12660316	+	asmbl_44487,asmbl_44488	none	STRG.6495.2,blat.proc3829873.chain_2579	2	STRG.6495.1,blat.proc3829873.chain_2574,blat.proc3829873.chain_2575,blat.proc3829873.chain_2576,blat.proc3829873.chain_2578,blat.proc3829873.chain_2580	6
scaffold_4	retained_intron	8246234	8246442	-	asmbl_41507	none	blat.proc3829889.chain_765	1	blat.proc3829889.chain_764	1
scaffold_2	spliced_intron	9295733	9295827	+	asmbl_24713	none	STRG.2171.1,blat.proc3829871.chain_2283	2	STRG.2171.2	1
scaffold_19	retained_exon	13195098	13195163	-	asmbl_21827,asmbl_21839,asmbl_21841,asmbl_21843,asmbl_21845	none	STRG.22682.1,blat.proc3829897.chain_3360,blat.proc3829897.chain_3361,blat.proc3829897.chain_3363,blat.proc3829897.chain_3364,blat.proc3829897.chain_3370	6	blat.proc3829897.chain_3362,blat.proc3829897.chain_3368	2
scaffold_7	ends_in_intron	2742005	2742005	+	asmbl_50544	none	STRG.8693.2	1	STRG.8693.1,blat.proc3829875.chain_1120	2
scaffold_3	retained_exon	14479687	14479761	+	asmbl_40490	none	STRG.3787.1,blat.proc3829873.chain_203	2	STRG.3787.2,blat.proc3829873.chain_202	2
scaffold_9	alternate_exon	5756644	5756967	-	asmbl_54992	none	STRG.11135.2	1	STRG.11135.1	1
scaffold_18	retained_intron	377007	377116	-	asmbl_19617	none	blat.proc3829897.chain_1876	1	STRG.20979.1,blat.proc3829897.chain_1875,blat.proc3829897.chain_1879	3
scaffold_5	retained_intron	14568812	14568989	-	asmbl_45980	none	blat.proc3829889.chain_2696	1	STRG.6648.1,STRG.6648.2,blat.proc3829889.chain_2695,blat.proc3829889.chain_2698	4
scaffold_6	retained_intron	17672230	17672360	+	asmbl_47711,asmbl_47713	none	STRG.8454.3,Trinity_GG_4651_c0_g1_i4,blat.proc3829875.chain_846,blat.proc3829875.chain_849	4	STRG.8454.1,STRG.8454.2,STRG.8454.4,Trinity_GG_4651_c0_g1_i2,Trinity_GG_4651_c0_g1_i5,blat.proc3829875.chain_847,blat.proc3829875.chain_848,blat.proc3829875.chain_850	8
scaffold_23	alt_acceptor	197906	197907	+	asmbl_30594	none	STRG.25518.1	1	STRG.25518.2	1
scaffold_17	retained_intron	5137391	5138143	-	asmbl_18963,asmbl_18964	none	STRG.20232.4,blat.proc3829897.chain_1208	2	STRG.20232.3,blat.proc3829897.chain_1209	2
scaffold_28	retained_exon	5391043	5391381	+	asmbl_38279,asmbl_38284	none	STRG.29664.1,STRG.29664.2,Trinity_GG_16450_c0_g1_i2,blat.proc3829885.chain_2784	4	STRG.29664.3,Trinity_GG_16450_c0_g1_i7,blat.proc3829885.chain_2783	3
scaffold_28	retained_intron	106950	107373	-	asmbl_37215,asmbl_37216	none	blat.proc3829901.chain_2341,blat.proc3829901.chain_2343	2	STRG.29229.1,STRG.29229.2,blat.proc3829901.chain_2342	3
scaffold_1	retained_intron	9294832	9294940	+	asmbl_1967	none	STRG.626.2	1	STRG.626.1,Trinity_GG_370_c0_g1_i1,Trinity_GG_370_c0_g1_i2,blat.proc3829871.chain_642,blat.proc3829871.chain_645	5
scaffold_8	retained_exon	18249902	18249987	-	asmbl_53538,asmbl_53539,asmbl_53542	none	STRG.10723.1,blat.proc3829891.chain_2924,blat.proc3829891.chain_2925	3	STRG.10723.3,STRG.10723.4,blat.proc3829891.chain_2921,blat.proc3829891.chain_2923	4
scaffold_27	ends_in_intron	2549539	2549539	+	asmbl_36052	none	blat.proc3829885.chain_1709	1	STRG.28709.1	1
scaffold_5	retained_exon	2175608	2175728	-	asmbl_45264,asmbl_45265	none	STRG.5744.1,STRG.5744.2,blat.proc3829889.chain_1867	3	STRG.5744.3	1
scaffold_9	alt_acceptor	11019801	11019802	-	asmbl_55230	none	STRG.11396.1,blat.proc3829891.chain_3555	2	STRG.11396.2,blat.proc3829891.chain_3554	2
scaffold_1	spliced_intron	5618829	5618888	+	asmbl_1728	none	STRG.352.3	1	STRG.352.1,STRG.352.2	2
scaffold_10	starts_in_intron	1490620	1490620	-	asmbl_2981	none	blat.proc3829893.chain_395	1	STRG.12017.1,STRG.12017.2,STRG.12017.3,blat.proc3829893.chain_389,blat.proc3829893.chain_390,blat.proc3829893.chain_392,blat.proc3829893.chain_394	7
scaffold_24	alternate_exon	10330681	10330839	+	asmbl_32556,asmbl_32557	none	STRG.26974.1,blat.proc3829885.chain_10,blat.proc3829885.chain_11	3	STRG.26974.2	1
scaffold_21	ends_in_intron	5146147	5146147	-	asmbl_27642	none	blat.proc3829899.chain_1185	1	blat.proc3829899.chain_1184	1
scaffold_2	starts_in_intron	8194392	8194392	+	asmbl_24653	none	blat.proc3829871.chain_2097	1	STRG.2108.1,STRG.2108.2,blat.proc3829871.chain_2098,blat.proc3829871.chain_2099	4
scaffold_6	retained_intron	4535550	4536418	-	asmbl_48279,asmbl_48280	none	STRG.7428.2,STRG.7428.3,Trinity_GG_21203_c0_g1_i1,blat.proc3829889.chain_3463	4	STRG.7428.1,blat.proc3829889.chain_3464	2
scaffold_3	spliced_intron	19407196	19407399	-	asmbl_39595,asmbl_39597	none	STRG.4084.3,blat.proc3829889.chain_158	2	blat.proc3829889.chain_156	1
scaffold_26	alt_acceptor	4470414	4470415	+	asmbl_35441	none	STRG.28139.2	1	STRG.28139.1,blat.proc3829885.chain_1127	2
scaffold_17	alternate_exon	8831490	8834314	-	asmbl_19171	none	STRG.20484.2	1	STRG.20484.1,blat.proc3829897.chain_1369,blat.proc3829897.chain_1370	3
scaffold_6	alternate_exon	5430341	5430391	+	asmbl_46888	none	STRG.7507.2,blat.proc3829873.chain_3620	2	STRG.7507.1,blat.proc3829873.chain_3622	2
scaffold_3	alt_acceptor	7917811	7917812	-	asmbl_38948,asmbl_38953	none	STRG.3375.2,blat.proc3829887.chain_3073,blat.proc3829887.chain_3074	3	STRG.3375.1,STRG.3375.3,STRG.3375.4,STRG.3375.5	4
scaffold_19	alt_acceptor	6791164	6791165	+	asmbl_22249	none	STRG.22187.1,blat.proc3829881.chain_3108	2	STRG.22187.2,blat.proc3829881.chain_3109	2
scaffold_4	alternate_exon	9965556	9965812	-	asmbl_41570,asmbl_41572	none	STRG.4758.1,blat.proc3829889.chain_822,blat.proc3829889.chain_824	3	STRG.4758.2	1
scaffold_9	spliced_intron	9657137	9657296	+	asmbl_54205,asmbl_54208,asmbl_54209	none	STRG.11332.1,STRG.11332.2,blat.proc3829877.chain_100,blat.proc3829877.chain_99	4	blat.proc3829877.chain_101,blat.proc3829877.chain_98	2
scaffold_1	starts_in_intron	19942733	19942733	-	asmbl_1158	none	blat.proc3829887.chain_1266	1	STRG.1365.1,blat.proc3829887.chain_1267	2
scaffold_6	retained_intron	12654661	12655318	+	asmbl_47364	none	STRG.8019.1,Trinity_GG_4365_c0_g1_i6,blat.proc3829875.chain_366,blat.proc3829875.chain_369	4	STRG.8019.2	1
scaffold_2	alt_acceptor	16403414	16403415	+	asmbl_25172	none	blat.proc3829871.chain_2791	1	blat.proc3829871.chain_2793	1
scaffold_11	alternate_exon	12759276	12759361	-	asmbl_7079	none	STRG.14154.2,blat.proc3829893.chain_2596	2	STRG.14154.1,blat.proc3829893.chain_2595	2
scaffold_22	alternate_exon	9716483	9717974	+	asmbl_29598	none	blat.proc3829883.chain_2292	1	STRG.25289.1,blat.proc3829883.chain_2270	2
scaffold_23	spliced_intron	2164190	2164417	-	asmbl_31418,asmbl_31422	none	STRG.25669.4,STRG.25669.7	2	STRG.25669.2,STRG.25669.5	2
scaffold_15	retained_intron	10766606	10766774	+	asmbl_14411	none	blat.proc3829879.chain_3163	1	STRG.18552.3,STRG.18552.5,blat.proc3829879.chain_3157,blat.proc3829879.chain_3159,blat.proc3829879.chain_3160,blat.proc3829879.chain_3161,blat.proc3829879.chain_3162	7
scaffold_11	ends_in_intron	584438	584438	+	asmbl_5254	none	blat.proc3829877.chain_1780	1	STRG.13261.1,blat.proc3829877.chain_1781	2
scaffold_25	retained_intron	4594574	4594648	+	asmbl_33523	none	STRG.27379.2,Trinity_GG_15102_c0_g1_i2,blat.proc3829885.chain_419	3	STRG.27379.1,Trinity_GG_15102_c0_g1_i1,blat.proc3829885.chain_418	3
scaffold_26	ends_in_intron	3268216	3268216	+	asmbl_35301	none	STRG.27995.3	1	STRG.27995.2,blat.proc3829885.chain_957,blat.proc3829885.chain_958	3
scaffold_10	retained_intron	3732047	3732294	+	asmbl_4347	none	blat.proc3829877.chain_871	1	STRG.12193.1,STRG.12193.2,blat.proc3829877.chain_869,blat.proc3829877.chain_872	4
scaffold_14	spliced_intron	2895797	2895880	+	asmbl_11862	none	STRG.16871.1,blat.proc3829879.chain_1584	2	Trinity_GG_9280_c0_g1_i2,blat.proc3829879.chain_1583	2
scaffold_6	alt_donor	3286005	3286006	-	asmbl_48182	none	STRG.7327.3	1	STRG.7327.1,STRG.7327.2	2
scaffold_4	retained_intron	13762015	13762163	-	asmbl_41751	none	blat.proc3829889.chain_1051	1	STRG.4997.1,STRG.4997.2,STRG.4997.3,blat.proc3829889.chain_1048,blat.proc3829889.chain_1049,blat.proc3829889.chain_1050	6
scaffold_23	starts_in_intron	4951152	4951152	+	asmbl_30840	none	Trinity_GG_14281_c0_g1_i4,blat.proc3829883.chain_2758	2	STRG.25865.1,Trinity_GG_14281_c0_g1_i2,Trinity_GG_14281_c0_g1_i3,Trinity_GG_14281_c0_g1_i5,blat.proc3829883.chain_2755,blat.proc3829883.chain_2756,blat.proc3829883.chain_2757	7
scaffold_1	retained_intron	8733024	8733104	-	asmbl_489	none	blat.proc3829887.chain_481	1	STRG.574.1,blat.proc3829887.chain_482,blat.proc3829887.chain_484	3
scaffold_25	retained_intron	6066560	6066726	-	asmbl_34295	none	blat.proc3829901.chain_717	1	STRG.27475.1,blat.proc3829901.chain_716,blat.proc3829901.chain_718,blat.proc3829901.chain_719,blat.proc3829901.chain_721,blat.proc3829901.chain_722	6
scaffold_1	alt_donor	13930118	13930119	-	asmbl_870	none	STRG.998.2	1	STRG.998.1	1
scaffold_78	alt_acceptor	17463	17464	+	asmbl_51613	none	STRG.30102.1,Trinity_GG_16670_c1_g1_i2	2	STRG.30102.2	1
scaffold_10	spliced_intron	11917146	11917229	-	asmbl_3706,asmbl_3708	none	STRG.12818.1,STRG.12818.2,blat.proc3829893.chain_1294	3	blat.proc3829893.chain_1295	1
scaffold_26	retained_exon	3672349	3672378	+	asmbl_35340,asmbl_35343,asmbl_35344	none	STRG.28032.1,blat.proc3829885.chain_1030,blat.proc3829885.chain_1032,blat.proc3829885.chain_1033	4	blat.proc3829885.chain_1029	1
scaffold_5	retained_exon	11913811	11913879	+	asmbl_44442	none	STRG.6437.2,blat.proc3829873.chain_2598	2	STRG.6437.1,blat.proc3829873.chain_2597	2
scaffold_28	retained_exon	6547930	6548040	-	asmbl_37678,asmbl_37680	none	STRG.29730.2,STRG.29730.3	2	STRG.29730.1,STRG.29730.4	2
scaffold_22	alternate_exon	4878592	4878677	-	asmbl_30045	none	STRG.24898.1,blat.proc3829899.chain_1916	2	STRG.24898.2,STRG.24898.3,blat.proc3829899.chain_1915,blat.proc3829899.chain_1917	4
scaffold_26	ends_in_intron	9608765	9608765	+	asmbl_35767,asmbl_35770	none	STRG.28493.2,blat.proc3829885.chain_1429	2	STRG.28493.1,Trinity_GG_15716_c0_g1_i2,blat.proc3829885.chain_1427	3
scaffold_20	ends_in_intron	5954211	5954211	-	asmbl_26724	none	Trinity_GG_29917_c0_g1_i1,blat.proc3829899.chain_158	2	STRG.23191.1,blat.proc3829899.chain_161	2
scaffold_19	retained_exon	12451454	12451603	-	asmbl_21697	none	STRG.22565.1	1	STRG.22565.2	1
scaffold_10	starts_in_intron	8983075	8983075	-	asmbl_3556	none	blat.proc3829893.chain_1104	1	STRG.12638.1,blat.proc3829893.chain_1105	2
scaffold_13	alt_acceptor	396247	396248	-	asmbl_9304	none	Trinity_GG_25691_c0_g1_i20,blat.proc3829895.chain_234	2	STRG.15428.1,STRG.15428.2,STRG.15428.3,Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i25,Trinity_GG_25691_c0_g1_i7,Trinity_GG_25691_c0_g1_i8,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_221,blat.proc3829895.chain_223,blat.proc3829895.chain_224,blat.proc3829895.chain_226,blat.proc3829895.chain_229,blat.proc3829895.chain_230,blat.proc3829895.chain_232,blat.proc3829895.chain_233	19
scaffold_17	alt_acceptor	11334982	11334983	+	asmbl_18342	none	STRG.20675.1	1	STRG.20675.2	1
scaffold_3	spliced_intron	11654136	11654326	+	asmbl_40325,asmbl_40326	none	STRG.3612.3,STRG.3612.4,Trinity_GG_2013_c0_g1_i2,blat.proc3829871.chain_3735	4	STRG.3612.1,STRG.3612.2,Trinity_GG_2013_c0_g1_i1,Trinity_GG_2013_c0_g1_i4,Trinity_GG_2013_c0_g1_i5,blat.proc3829871.chain_3736,blat.proc3829871.chain_3737,blat.proc3829871.chain_3738	8
scaffold_28	spliced_intron	5358871	5358960	-	asmbl_37609	none	STRG.29661.1,blat.proc3829901.chain_2785	2	STRG.29661.2	1
scaffold_13	retained_intron	7085246	7085351	-	asmbl_9808	none	blat.proc3829895.chain_773	1	STRG.16000.2	1
scaffold_23	alternate_exon	4100534	4104950	-	asmbl_31553	none	STRG.25802.2	1	STRG.25802.3,blat.proc3829899.chain_2933,blat.proc3829899.chain_2937	3
scaffold_6	alt_donor	13711507	13711508	-	asmbl_48877	none	blat.proc3829891.chain_422	1	STRG.8115.1	1
scaffold_4	retained_intron	7198052	7199617	-	asmbl_41439	none	STRG.4550.1,Trinity_GG_19534_c0_g1_i4,blat.proc3829889.chain_620,blat.proc3829889.chain_621	4	blat.proc3829889.chain_622	1
scaffold_8	spliced_intron	6161100	6161201	-	asmbl_52853,asmbl_52854,asmbl_52857,asmbl_52858	none	STRG.10012.1,STRG.10012.3,Trinity_GG_22628_c0_g1_i1,blat.proc3829891.chain_2213,blat.proc3829891.chain_2214,blat.proc3829891.chain_2216,blat.proc3829891.chain_2218	7	blat.proc3829891.chain_2215,blat.proc3829891.chain_2217	2
scaffold_14	retained_intron	150868	151276	-	asmbl_12763,asmbl_12764,asmbl_12765	none	STRG.16700.4,STRG.16700.5,blat.proc3829895.chain_1388	3	STRG.16700.2,STRG.16700.3,Trinity_GG_26353_c0_g1_i1,Trinity_GG_26353_c0_g1_i4,blat.proc3829895.chain_1383,blat.proc3829895.chain_1384,blat.proc3829895.chain_1385,blat.proc3829895.chain_1386,blat.proc3829895.chain_1387	9
scaffold_28	ends_in_intron	3843815	3843815	+	asmbl_38192	none	Trinity_GG_16385_c1_g1_i2	1	STRG.29563.1,blat.proc3829885.chain_2663	2
scaffold_4	alt_donor	16577619	16577620	+	asmbl_43316	none	STRG.5238.3	1	STRG.5238.2	1
scaffold_5	skipped_exon	17191832	17194624	+	asmbl_44803	none	STRG.6883.2	1	STRG.6883.1	1
scaffold_2	spliced_intron	17445635	17445797	-	asmbl_23738	none	STRG.2626.1	1	STRG.2626.2,Trinity_GG_18463_c0_g1_i2	2
scaffold_10	spliced_intron	16475945	16476026	-	asmbl_3909	none	STRG.13105.4	1	STRG.13105.2,Trinity_GG_24363_c0_g1_i1,blat.proc3829893.chain_1614	3
scaffold_19	starts_in_intron	3060044	3060044	+	asmbl_22103	none	Trinity_GG_12168_c0_g1_i1,blat.proc3829881.chain_2952	2	STRG.21984.1,blat.proc3829881.chain_2951	2
scaffold_21	alt_donor	730900	730901	+	asmbl_28312,asmbl_28313	none	STRG.23754.2,STRG.23754.5,Trinity_GG_13126_c0_g1_i1,Trinity_GG_13126_c0_g3_i1,blat.proc3829883.chain_853,blat.proc3829883.chain_855	6	STRG.23754.4	1
scaffold_1	starts_in_intron	9651106	9651106	-	asmbl_560	none	blat.proc3829887.chain_548	1	STRG.651.1,STRG.651.2,blat.proc3829887.chain_547,blat.proc3829887.chain_549	4
scaffold_19	alt_acceptor	6669594	6669595	+	asmbl_22230	none	STRG.22169.4	1	STRG.22169.3,blat.proc3829881.chain_3027	2
scaffold_20	alternate_exon	7264915	7266842	+	asmbl_25870,asmbl_25872	none	STRG.23283.1,STRG.23283.2,blat.proc3829883.chain_359	3	STRG.23283.3,blat.proc3829883.chain_360	2
scaffold_26	alt_acceptor	5150598	5150599	+	asmbl_35491	none	STRG.28203.1	1	Trinity_GG_15577_c0_g1_i1,blat.proc3829885.chain_1203	2
scaffold_19	alt_donor	6686908	6686909	+	asmbl_22238	none	blat.proc3829881.chain_3047	1	STRG.22182.1,Trinity_GG_12219_c0_g1_i3,Trinity_GG_12219_c0_g1_i4,blat.proc3829881.chain_3046,blat.proc3829881.chain_3048	5
scaffold_9	alternate_exon	2029157	2029247	-	asmbl_54826	none	STRG.10869.1,blat.proc3829891.chain_3051	2	STRG.10869.2	1
scaffold_1	alternate_exon	8753713	8759675	-	asmbl_502	none	STRG.583.2,blat.proc3829887.chain_507	2	STRG.583.3,blat.proc3829887.chain_506	2
scaffold_12	starts_in_intron	3963795	3963795	+	asmbl_8538	none	blat.proc3829877.chain_3102	1	STRG.14578.1,blat.proc3829877.chain_3103	2
scaffold_8	skipped_exon	12693269	12693431	+	asmbl_52317,asmbl_52318,asmbl_52322	none	blat.proc3829875.chain_2945,blat.proc3829875.chain_2946,blat.proc3829875.chain_2948	3	STRG.10436.1,STRG.10436.2,blat.proc3829875.chain_2949	3
scaffold_25	spliced_intron	8680664	8680776	+	asmbl_33740	none	STRG.27670.2,blat.proc3829885.chain_678	2	STRG.27670.1,blat.proc3829885.chain_677	2
scaffold_19	starts_in_intron	7606774	7606774	+	asmbl_22286	none	Trinity_GG_12254_c0_g1_i1,blat.proc3829881.chain_3114	2	STRG.22222.1,Trinity_GG_12254_c0_g1_i2,blat.proc3829881.chain_3113	3
scaffold_16	ends_in_intron	8095610	8095610	+	asmbl_17179	none	Trinity_GG_10640_c0_g1_i3,blat.proc3829881.chain_301	2	STRG.19440.1,Trinity_GG_10640_c0_g1_i1,Trinity_GG_10640_c0_g1_i2,blat.proc3829881.chain_300,blat.proc3829881.chain_302	5
scaffold_25	retained_intron	7220043	7220502	-	asmbl_34364	none	blat.proc3829901.chain_880	1	STRG.27562.1,blat.proc3829901.chain_878,blat.proc3829901.chain_879	3
scaffold_19	skipped_exon	3669778	3671440	-	asmbl_21323,asmbl_21330	none	STRG.22034.1,Trinity_GG_29269_c0_g1_i6,blat.proc3829897.chain_2742,blat.proc3829897.chain_2745	4	STRG.22034.3,Trinity_GG_29269_c0_g1_i2,blat.proc3829897.chain_2743	3
scaffold_2	starts_in_intron	14232018	14232018	-	asmbl_23605	none	STRG.2418.2	1	blat.proc3829887.chain_2303	1
scaffold_24	alternate_exon	6442831	6444640	+	asmbl_32317,asmbl_32318,asmbl_32319,asmbl_32322	none	STRG.26679.1,STRG.26679.2,STRG.26679.3,blat.proc3829883.chain_3599,blat.proc3829883.chain_3600,blat.proc3829883.chain_3601,blat.proc3829883.chain_3602	7	blat.proc3829883.chain_3603	1
scaffold_2	ends_in_intron	5200909	5200909	+	asmbl_24424	none	blat.proc3829871.chain_1966	1	STRG.1940.1,STRG.1940.2,Trinity_GG_1078_c0_g1_i2,Trinity_GG_1078_c0_g1_i3,Trinity_GG_1078_c0_g1_i5,blat.proc3829871.chain_1968,blat.proc3829871.chain_1969,blat.proc3829871.chain_1970	8
scaffold_2	retained_intron	7922295	7922439	-	asmbl_23320	none	STRG.2092.2	1	STRG.2092.1,blat.proc3829887.chain_2032,blat.proc3829887.chain_2033,blat.proc3829887.chain_2034,blat.proc3829887.chain_2036	5
scaffold_5	alt_acceptor	6627539	6627540	-	asmbl_45508,asmbl_45509	none	STRG.6058.1,blat.proc3829889.chain_2094,blat.proc3829889.chain_2095	3	STRG.6058.2	1
scaffold_5	retained_intron	5622048	5622220	-	asmbl_45436	none	Trinity_GG_20335_c0_g1_i3,blat.proc3829889.chain_1969	2	STRG.5980.1,STRG.5980.2,blat.proc3829889.chain_1966	3
scaffold_4	spliced_intron	19539846	19539879	-	asmbl_42201	none	STRG.5538.3	1	STRG.5538.2,Trinity_GG_20121_c0_g1_i2,blat.proc3829889.chain_1602	3
scaffold_27	alternate_exon	1028193	1028232	-	asmbl_36692	none	STRG.28589.2	1	STRG.28589.1,STRG.28589.3,Trinity_GG_32976_c2_g1_i1,blat.proc3829901.chain_1729,blat.proc3829901.chain_1731	5
scaffold_20	ends_in_intron	3540165	3540165	-	asmbl_26624	none	blat.proc3829899.chain_69	1	STRG.23053.1,blat.proc3829899.chain_70	2
scaffold_18	starts_in_intron	7172411	7172411	-	asmbl_19963	none	blat.proc3829897.chain_2257	1	STRG.21405.1,STRG.21405.2,STRG.21405.3,Trinity_GG_28995_c0_g1_i3,Trinity_GG_28995_c0_g1_i5,blat.proc3829897.chain_2258,blat.proc3829897.chain_2259	7
scaffold_14	alternate_exon	9314212	9314266	-	asmbl_13360	none	STRG.17316.2,Trinity_GG_26727_c0_g1_i1,blat.proc3829895.chain_2036	3	STRG.17316.1	1
scaffold_10	alt_acceptor	7667451	7667452	+	asmbl_4569,asmbl_4572	none	STRG.12546.2,blat.proc3829877.chain_1138	2	STRG.12546.1,STRG.12546.3,blat.proc3829877.chain_1137,blat.proc3829877.chain_1139	4
scaffold_12	alt_donor	7173476	7173477	+	asmbl_8686	none	blat.proc3829877.chain_3242	1	STRG.14775.1,STRG.14775.2,blat.proc3829877.chain_3240,blat.proc3829877.chain_3241,blat.proc3829877.chain_3243	5
scaffold_3	alt_acceptor	6041928	6041929	-	asmbl_38836	none	STRG.3255.5	1	STRG.3255.1,STRG.3255.2,STRG.3255.7	3
scaffold_18	alt_acceptor	1648349	1648350	-	asmbl_19666	none	STRG.21035.2,blat.proc3829897.chain_1865	2	STRG.21035.1,blat.proc3829897.chain_1864	2
scaffold_5	skipped_exon	2166979	2168141	-	asmbl_45265	none	STRG.5744.2	1	STRG.5744.1,STRG.5744.3,blat.proc3829889.chain_1867	3
scaffold_2	alternate_exon	7471001	7471118	-	asmbl_23284	none	Trinity_GG_18127_c0_g1_i23,Trinity_GG_18127_c0_g1_i8,blat.proc3829887.chain_1889,blat.proc3829887.chain_1895	4	STRG.2075.2	1
scaffold_1	retained_exon	11175248	11175308	+	asmbl_2064,asmbl_2065,asmbl_2066,asmbl_2069,asmbl_2074,asmbl_2077	none	STRG.743.1,STRG.743.2,STRG.743.3,STRG.743.4,STRG.743.5,blat.proc3829871.chain_815,blat.proc3829871.chain_818,blat.proc3829871.chain_820,blat.proc3829871.chain_824,blat.proc3829871.chain_825	10	blat.proc3829871.chain_821	1
scaffold_23	spliced_intron	5732593	5732880	+	asmbl_30888	none	STRG.25924.1,Trinity_GG_14300_c0_g1_i1,blat.proc3829883.chain_2790	3	STRG.25924.2,Trinity_GG_14300_c0_g1_i2,Trinity_GG_14300_c0_g1_i3,blat.proc3829883.chain_2791,blat.proc3829883.chain_2792	5
scaffold_26	starts_in_intron	6646165	6646165	+	asmbl_35619	none	Trinity_GG_15638_c0_g1_i1,Trinity_GG_15638_c0_g1_i2,blat.proc3829885.chain_1304,blat.proc3829885.chain_1305	4	STRG.28331.1	1
scaffold_24	alt_donor	10089224	10089225	+	asmbl_32541	none	blat.proc3829901.chain_242	1	STRG.26956.2	1
scaffold_6	skipped_exon	18209816	18210868	-	asmbl_49167	none	STRG.8489.1	1	STRG.8489.2	1
scaffold_8	alt_donor	11270675	11270676	-	asmbl_53139	none	STRG.10329.3	1	STRG.10329.2,blat.proc3829891.chain_2491	2
scaffold_10	starts_in_intron	2751799	2751799	+	asmbl_4287	none	Trinity_GG_6698_c0_g1_i3,blat.proc3829877.chain_745	2	STRG.12085.1,blat.proc3829877.chain_746,blat.proc3829877.chain_747	3
scaffold_13	ends_in_intron	12105179	12105179	+	asmbl_11316	none	Trinity_GG_8989_c0_g1_i5,blat.proc3829879.chain_1104	2	STRG.16334.1,Trinity_GG_8989_c0_g1_i1,blat.proc3829879.chain_1102	3
scaffold_18	retained_exon	2056676	2056747	-	asmbl_19735	none	STRG.21088.2,blat.proc3829897.chain_1995	2	STRG.21088.1,blat.proc3829897.chain_1996	2
scaffold_3	alt_donor	14466999	14467000	+	asmbl_40486	none	STRG.3783.1,Trinity_GG_2124_c0_g1_i1,blat.proc3829873.chain_193	3	STRG.3783.2	1
scaffold_3	alt_acceptor	14496087	14496088	-	asmbl_39330	none	Trinity_GG_19109_c0_g1_i1,blat.proc3829887.chain_3589	2	STRG.3788.1,Trinity_GG_19109_c0_g1_i2,blat.proc3829887.chain_3590	3
scaffold_18	alternate_exon	1390313	1391632	-	asmbl_19650	none	STRG.21014.1,Trinity_GG_28794_c0_g1_i1,blat.proc3829897.chain_1914,blat.proc3829897.chain_1932	4	STRG.21014.3,Trinity_GG_28799_c0_g1_i5,blat.proc3829897.chain_1931	3
scaffold_3	alt_acceptor	14519600	14519601	-	asmbl_39336	none	Trinity_GG_19119_c0_g1_i1,blat.proc3829887.chain_3616	2	STRG.3789.1,Trinity_GG_19119_c0_g1_i2,Trinity_GG_19119_c0_g1_i5,blat.proc3829887.chain_3617,blat.proc3829887.chain_3619	5
scaffold_20	retained_exon	11085819	11086249	-	asmbl_27062	none	STRG.23609.1,Trinity_GG_30167_c1_g1_i1,blat.proc3829899.chain_618	3	STRG.23609.2,Trinity_GG_30167_c1_g1_i3,blat.proc3829899.chain_617	3
scaffold_17	alt_donor	4289170	4289171	-	asmbl_18889,asmbl_18890	none	STRG.20169.1,blat.proc3829897.chain_1100,blat.proc3829897.chain_1101	3	blat.proc3829897.chain_1102	1
scaffold_15	alternate_exon	14633628	14633806	-	asmbl_15752	none	blat.proc3829895.chain_3646	1	STRG.18867.2,STRG.18867.3,blat.proc3829895.chain_3643,blat.proc3829895.chain_3644	4
scaffold_254	ends_in_intron	4357	4357	-	asmbl_34625	none	STRG.30227.2,Trinity_GG_33962_c0_g1_i1,blat.proc3829901.chain_3296	3	STRG.30227.1	1
scaffold_14	skipped_exon	10371561	10372201	-	asmbl_13400	none	STRG.17373.1,blat.proc3829895.chain_2116	2	STRG.17373.2,blat.proc3829895.chain_2115	2
scaffold_14	starts_in_intron	12325709	12325709	-	asmbl_13548	none	blat.proc3829895.chain_2209	1	STRG.17544.1,STRG.17544.2,blat.proc3829895.chain_2210,blat.proc3829895.chain_2211	4
scaffold_12	alternate_exon	7618895	7619017	-	asmbl_7730,asmbl_7732,asmbl_7733,asmbl_7734	none	STRG.14826.1,STRG.14826.2,STRG.14826.3,STRG.14826.4,blat.proc3829893.chain_3214	5	STRG.14826.5,STRG.14826.6,blat.proc3829893.chain_3215	3
scaffold_26	starts_in_intron	4136644	4136644	-	asmbl_34808,asmbl_34809	none	STRG.28100.1,STRG.28100.4	2	STRG.28100.2,STRG.28100.3,blat.proc3829901.chain_1327,blat.proc3829901.chain_1328	4
scaffold_4	alt_donor	9514416	9514417	-	asmbl_41554	none	STRG.4730.1,blat.proc3829889.chain_816	2	STRG.4730.2	1
scaffold_19	ends_in_intron	11555481	11555481	-	asmbl_21635	none	Trinity_GG_29507_c0_g1_i3,blat.proc3829897.chain_3144	2	STRG.22479.1,Trinity_GG_29507_c0_g1_i2,Trinity_GG_29507_c0_g1_i5,blat.proc3829897.chain_3143,blat.proc3829897.chain_3145	5
scaffold_24	starts_in_intron	9671263	9671263	+	asmbl_32532	none	Trinity_GG_14880_c0_g1_i2,blat.proc3829885.chain_47	2	STRG.26936.1,blat.proc3829885.chain_46	2
scaffold_13	alt_donor	6114510	6114511	+	asmbl_10898,asmbl_10899	none	STRG.15905.2,blat.proc3829879.chain_603	2	STRG.15905.1,blat.proc3829879.chain_604	2
scaffold_18	alt_donor	7219086	7219087	-	asmbl_19967	none	STRG.21410.2	1	STRG.21410.1	1
scaffold_6	ends_in_intron	9170256	9170256	+	asmbl_47162	none	Trinity_GG_4279_c0_g1_i3,blat.proc3829875.chain_169	2	STRG.7785.1,Trinity_GG_4279_c0_g1_i1,Trinity_GG_4279_c0_g1_i2,blat.proc3829875.chain_170,blat.proc3829875.chain_171	5
scaffold_25	starts_in_intron	7944527	7944527	+	asmbl_33698	none	blat.proc3829885.chain_634	1	STRG.27608.1,blat.proc3829885.chain_633	2
scaffold_7	alt_donor	13197768	13197769	-	asmbl_50114,asmbl_50115,asmbl_50117	none	STRG.9418.1,blat.proc3829891.chain_1691,blat.proc3829891.chain_1692,blat.proc3829891.chain_1695	4	blat.proc3829891.chain_1694	1
scaffold_22	skipped_exon	8236659	8237400	-	asmbl_30234	none	STRG.25164.3	1	STRG.25164.1,STRG.25164.2,blat.proc3829899.chain_2248	3
scaffold_13	alt_acceptor	16048913	16048914	+	asmbl_11523	none	STRG.16628.1	1	STRG.16628.2	1
scaffold_11	alternate_exon	4722979	4723022	+	asmbl_5467	none	STRG.13548.1	1	STRG.13548.2	1
scaffold_4	retained_exon	10856850	10856930	+	asmbl_43007	none	STRG.4806.2,blat.proc3829873.chain_1151	2	STRG.4806.1	1
scaffold_8	alternate_exon	9291003	9291962	+	asmbl_52053	none	STRG.10181.1,blat.proc3829875.chain_2680	2	STRG.10181.2,blat.proc3829875.chain_2681	2
scaffold_1	alt_acceptor	18486047	18486048	-	asmbl_1113	none	STRG.1300.3	1	STRG.1300.2,blat.proc3829887.chain_1210	2
scaffold_5	spliced_intron	939420	939502	-	asmbl_45188	none	STRG.5635.3	1	STRG.5635.1	1
scaffold_926	starts_in_intron	2052	2052	-	asmbl_55797	none	blat.proc3829901.chain_3528	1	STRG.30483.1	1
scaffold_23	spliced_intron	5337942	5338313	-	asmbl_31626,asmbl_31628,asmbl_31631	none	STRG.25890.1,STRG.25890.2,Trinity_GG_31478_c0_g1_i5,Trinity_GG_31478_c0_g1_i6,blat.proc3829899.chain_2981,blat.proc3829899.chain_2982	6	Trinity_GG_31478_c0_g1_i4,blat.proc3829899.chain_2980	2
scaffold_17	starts_in_intron	6593935	6593935	+	asmbl_17988	none	blat.proc3829881.chain_1097	1	STRG.20304.1,blat.proc3829881.chain_1098	2
scaffold_16	spliced_intron	10449967	10450337	+	asmbl_17335,asmbl_17336,asmbl_17338,asmbl_17339,asmbl_17340,asmbl_17341	none	STRG.19602.1,STRG.19602.2,STRG.19602.3,STRG.19602.4,STRG.19602.5,Trinity_GG_10708_c0_g1_i3,blat.proc3829881.chain_423,blat.proc3829881.chain_424,blat.proc3829881.chain_426	9	Trinity_GG_10708_c0_g1_i1,blat.proc3829881.chain_425	2
scaffold_13	ends_in_intron	904299	904299	-	asmbl_9343	none	Trinity_GG_25690_c0_g1_i3,blat.proc3829895.chain_218	2	STRG.15448.1,STRG.15448.3,STRG.15448.4,STRG.15448.5,STRG.15448.6,blat.proc3829895.chain_212,blat.proc3829895.chain_213,blat.proc3829895.chain_214,blat.proc3829895.chain_215,blat.proc3829895.chain_216	10
scaffold_26	spliced_intron	5040641	5040729	+	asmbl_35463,asmbl_35464,asmbl_35465,asmbl_35466,asmbl_35467,asmbl_35468,asmbl_35469	none	STRG.28206.1,blat.proc3829883.chain_2343,blat.proc3829883.chain_2345,blat.proc3829885.chain_1156,blat.proc3829885.chain_1157,blat.proc3829885.chain_1159,blat.proc3829885.chain_1162,blat.proc3829885.chain_1164,blat.proc3829885.chain_1168	9	blat.proc3829885.chain_1158,blat.proc3829885.chain_1163,blat.proc3829885.chain_1169	3
scaffold_19	retained_intron	13010845	13011231	-	asmbl_21797,asmbl_21798,asmbl_21801	none	STRG.22610.2,STRG.22610.3,blat.proc3829897.chain_3403	3	STRG.22610.1,STRG.22610.4,blat.proc3829897.chain_3402,blat.proc3829897.chain_3404	4
scaffold_23	ends_in_intron	2995710	2995710	-	asmbl_31496	none	blat.proc3829899.chain_2868	1	STRG.25729.1,blat.proc3829899.chain_2872	2
scaffold_1	skipped_exon	8631689	8634025	-	asmbl_466,asmbl_471	none	STRG.568.1,blat.proc3829887.chain_447,blat.proc3829887.chain_448	3	STRG.568.2,blat.proc3829887.chain_449	2
scaffold_25	starts_in_intron	3172378	3172378	-	asmbl_34097	none	Trinity_GG_32274_c0_g1_i2,blat.proc3829901.chain_563	2	STRG.27236.1,Trinity_GG_32274_c0_g1_i1,blat.proc3829901.chain_562	3
scaffold_13	starts_in_intron	8321494	8321494	+	asmbl_11107	none	Trinity_GG_8868_c1_g1_i1,blat.proc3829879.chain_877	2	STRG.16110.1,blat.proc3829879.chain_876	2
scaffold_21	alt_donor	406299	406300	-	asmbl_27340,asmbl_27341	none	STRG.23722.4,Trinity_GG_30229_c0_g1_i7,Trinity_GG_30229_c0_g1_i9,blat.proc3829899.chain_770,blat.proc3829899.chain_771	5	STRG.23722.5	1
scaffold_9	alt_acceptor	11788197	11788198	+	asmbl_54364	none	STRG.11481.2,blat.proc3829877.chain_230	2	STRG.11481.1,blat.proc3829877.chain_231	2
scaffold_17	alt_acceptor	539183	539184	+	asmbl_17671,asmbl_17672	none	STRG.19892.1,STRG.19892.4	2	STRG.19892.2,blat.proc3829881.chain_742,blat.proc3829881.chain_743	3
scaffold_6	alternate_exon	5266625	5269490	+	asmbl_46876	none	STRG.7492.3,Trinity_GG_4102_c2_g1_i1,blat.proc3829873.chain_3609,blat.proc3829873.chain_3612	4	STRG.7492.2,blat.proc3829873.chain_3608	2
scaffold_10	alt_acceptor	2766930	2766931	+	asmbl_4289	none	STRG.12087.2,blat.proc3829877.chain_797	2	STRG.12087.1,blat.proc3829877.chain_796	2
scaffold_20	skipped_exon	6468162	6468442	-	asmbl_26757	none	STRG.23219.2	1	STRG.23219.1,blat.proc3829899.chain_260	2
scaffold_10	retained_intron	8895156	8895317	-	asmbl_3536,asmbl_3541	none	blat.proc3829893.chain_1127,blat.proc3829893.chain_1133	2	STRG.12629.1,blat.proc3829893.chain_1128,blat.proc3829893.chain_1129,blat.proc3829893.chain_1130,blat.proc3829893.chain_1131,blat.proc3829893.chain_1132,blat.proc3829893.chain_1134,blat.proc3829893.chain_1135,blat.proc3829893.chain_1136	9
scaffold_15	alt_acceptor	12106784	12106785	+	asmbl_14479	none	blat.proc3829879.chain_3249	1	STRG.18659.1,STRG.18659.2	2
scaffold_6	alternate_exon	8578670	8581115	+	asmbl_47085,asmbl_47088	none	STRG.7732.3,blat.proc3829875.chain_112	2	STRG.7732.4	1
scaffold_15	alternate_exon	13311964	13312005	+	asmbl_14569	none	STRG.18754.1	1	STRG.18754.2,Trinity_GG_10292_c0_g1_i1,blat.proc3829879.chain_3357	3
scaffold_1	retained_intron	9164643	9164743	-	asmbl_523	none	blat.proc3829887.chain_526	1	STRG.610.1	1
scaffold_9	alt_acceptor	11837709	11837710	-	asmbl_55287,asmbl_55289	none	STRG.11489.1,STRG.11489.2,blat.proc3829891.chain_3601,blat.proc3829891.chain_3602	4	STRG.11489.3,blat.proc3829891.chain_3603,blat.proc3829891.chain_3604	3
scaffold_2	spliced_intron	16362712	16362791	+	asmbl_25157,asmbl_25158	none	STRG.2574.1,Trinity_GG_1456_c0_g1_i1,Trinity_GG_1456_c0_g1_i2,blat.proc3829871.chain_2762,blat.proc3829871.chain_2764	5	STRG.2574.2,Trinity_GG_1456_c0_g1_i3,blat.proc3829871.chain_2763	3
scaffold_18	skipped_exon	1886374	1887983	-	asmbl_19689,asmbl_19697,asmbl_19699,asmbl_19701,asmbl_19702	none	STRG.21072.2,STRG.21072.3,STRG.21072.4,STRG.21072.6,blat.proc3829897.chain_1893	5	STRG.21072.1,blat.proc3829897.chain_1890,blat.proc3829897.chain_1895,blat.proc3829897.chain_1897	4
scaffold_6	alt_acceptor	13273352	13273353	+	asmbl_47452,asmbl_47456	none	STRG.8085.3,blat.proc3829875.chain_490,blat.proc3829875.chain_492	3	STRG.8085.2	1
scaffold_25	alt_donor	6026119	6026120	-	asmbl_34274	none	STRG.27470.2	1	STRG.27470.1	1
scaffold_24	starts_in_intron	6071705	6071705	+	asmbl_32288	none	STRG.26647.2,blat.proc3829883.chain_3493	2	STRG.26647.1,blat.proc3829883.chain_3494	2
scaffold_13	skipped_exon	5919688	5920404	-	asmbl_9709	none	STRG.15892.2,Trinity_GG_25942_c0_g1_i3,blat.proc3829895.chain_648	3	STRG.15892.1,Trinity_GG_25942_c0_g1_i2,blat.proc3829895.chain_649	3
scaffold_18	alt_acceptor	1686663	1686664	-	asmbl_19672	none	STRG.21044.1,blat.proc3829897.chain_1941	2	STRG.21044.2,blat.proc3829897.chain_1940	2
scaffold_2	retained_intron	19521884	19522271	-	asmbl_23888	none	STRG.2810.1,Trinity_GG_18564_c0_g1_i2,Trinity_GG_18564_c0_g2_i1,blat.proc3829887.chain_2636,blat.proc3829887.chain_2638	5	STRG.2810.2	1
scaffold_17	spliced_intron	3990599	3990682	-	asmbl_18882	none	STRG.20147.2,blat.proc3829897.chain_1117	2	STRG.20147.1,blat.proc3829897.chain_1115	2
scaffold_26	starts_in_intron	2001915	2001915	+	asmbl_35262	none	blat.proc3829885.chain_913	1	STRG.27935.1	1
scaffold_1	spliced_intron	14190668	14191031	-	asmbl_872,asmbl_877,asmbl_878,asmbl_880	none	STRG.1005.1,blat.proc3829887.chain_944,blat.proc3829887.chain_945,blat.proc3829887.chain_947,blat.proc3829887.chain_949	5	blat.proc3829887.chain_948	1
scaffold_12	ends_in_intron	7604319	7604319	+	asmbl_8734	none	blat.proc3829877.chain_3314	1	STRG.14824.1,blat.proc3829877.chain_3315	2
scaffold_16	alt_donor	434013	434014	-	asmbl_16053	none	blat.proc3829897.chain_26	1	blat.proc3829897.chain_17,blat.proc3829897.chain_18	2
scaffold_20	starts_in_intron	9106004	9106004	+	asmbl_25985	none	Trinity_GG_12953_c0_g1_i3,blat.proc3829883.chain_542	2	STRG.23442.1,STRG.23442.2,Trinity_GG_12953_c0_g1_i1,Trinity_GG_12953_c0_g1_i2,blat.proc3829883.chain_540,blat.proc3829883.chain_541,blat.proc3829883.chain_543	7
scaffold_26	alt_donor	2926962	2926963	+	asmbl_35292	none	STRG.27961.2	1	STRG.27961.1,Trinity_GG_15430_c0_g1_i1,blat.proc3829885.chain_945	3
scaffold_27	ends_in_intron	7607280	7607280	+	asmbl_36432	none	STRG.29109.1	1	STRG.29109.2	1
scaffold_1	spliced_intron	16751465	16751493	-	asmbl_1017	none	STRG.1176.2	1	STRG.1176.1,blat.proc3829887.chain_1008	2
scaffold_24	spliced_intron	6432023	6432210	-	asmbl_32947	none	STRG.26677.1,blat.proc3829899.chain_3722	2	blat.proc3829899.chain_3723	1
scaffold_3	alternate_exon	8252347	8253369	+	asmbl_40166	none	STRG.3399.2	1	Trinity_GG_1923_c0_g1_i1,blat.proc3829871.chain_3569	2
scaffold_5	retained_exon	10297615	10297744	-	asmbl_45719,asmbl_45722,asmbl_45724	none	STRG.6324.1,STRG.6324.2,blat.proc3829889.chain_2410,blat.proc3829889.chain_2412	4	STRG.6324.3	1
scaffold_18	ends_in_intron	371396	371396	-	asmbl_19612	none	Trinity_GG_28783_c0_g1_i5,blat.proc3829897.chain_1877	2	STRG.20979.1,blat.proc3829897.chain_1875,blat.proc3829897.chain_1876,blat.proc3829897.chain_1878,blat.proc3829897.chain_1879	5
scaffold_6	alt_acceptor	12003111	12003112	+	asmbl_47303,asmbl_47306	none	STRG.7963.1,STRG.7963.2	2	STRG.7963.3	1
scaffold_24	retained_intron	2744728	2744809	+	asmbl_32118	none	STRG.26464.3	1	STRG.26464.4	1
scaffold_21	alt_acceptor	5528440	5528441	+	asmbl_28592,asmbl_28593	none	STRG.24070.1,blat.proc3829883.chain_1218,blat.proc3829883.chain_1219	3	STRG.24070.2	1
scaffold_13	alternate_exon	408348	408504	-	asmbl_9317	none	STRG.15428.2	1	STRG.15428.1,STRG.15428.3,Trinity_GG_25691_c0_g1_i13,Trinity_GG_25691_c0_g1_i16,Trinity_GG_25691_c0_g1_i22,Trinity_GG_25691_c0_g1_i23,Trinity_GG_25691_c0_g1_i7,Trinity_GG_25691_c0_g1_i9,blat.proc3829895.chain_220,blat.proc3829895.chain_221,blat.proc3829895.chain_222,blat.proc3829895.chain_224,blat.proc3829895.chain_229,blat.proc3829895.chain_230,blat.proc3829895.chain_232,blat.proc3829895.chain_233	16
scaffold_24	retained_exon	4319607	4319675	+	asmbl_32200	none	STRG.26578.2	1	STRG.26578.3	1
scaffold_9	ends_in_intron	3674519	3674519	-	asmbl_54889	none	Trinity_GG_23073_c0_g2_i2,blat.proc3829891.chain_3087	2	Trinity_GG_23073_c0_g2_i1,blat.proc3829891.chain_3086	2
scaffold_15	alternate_exon	6884075	6884395	-	asmbl_15275	none	STRG.18290.4,Trinity_GG_27246_c1_g1_i1,blat.proc3829895.chain_2943	3	STRG.18290.3,Trinity_GG_27246_c0_g1_i5,blat.proc3829895.chain_2935	3
scaffold_6	ends_in_intron	6004309	6004309	-	asmbl_48384	none	blat.proc3829889.chain_3569	1	STRG.7545.1,blat.proc3829889.chain_3570	2
scaffold_1	alt_donor	14563473	14563474	-	asmbl_946	none	STRG.1055.1,blat.proc3829887.chain_974	2	STRG.1055.2,blat.proc3829887.chain_975	2
scaffold_23	alt_acceptor	10938169	10938170	-	asmbl_31890	none	blat.proc3829899.chain_3332,blat.proc3829899.chain_3333	2	STRG.26279.1,STRG.26279.2,STRG.26279.3	3
scaffold_13	retained_intron	6686158	6686374	+	asmbl_10949	none	blat.proc3829879.chain_625	1	STRG.15941.1,Trinity_GG_8757_c0_g1_i1,blat.proc3829879.chain_626	3
scaffold_17	retained_intron	538675	539184	+	asmbl_17670,asmbl_17674	none	STRG.19892.3,blat.proc3829881.chain_739,blat.proc3829881.chain_740	3	STRG.19892.1,STRG.19892.4	2
scaffold_7	retained_intron	13554150	13554287	-	asmbl_50130	none	blat.proc3829891.chain_1630	1	STRG.9466.1,blat.proc3829891.chain_1631	2
scaffold_2	alt_donor	17611208	17611209	+	asmbl_25219,asmbl_25220,asmbl_25223	none	STRG.2650.1,STRG.2650.2,blat.proc3829871.chain_2855,blat.proc3829871.chain_2856,blat.proc3829871.chain_2857	5	STRG.2650.3	1
scaffold_9	starts_in_intron	15589107	15589107	+	asmbl_54560	none	blat.proc3829877.chain_501	1	STRG.11739.1,blat.proc3829877.chain_496,blat.proc3829877.chain_497,blat.proc3829877.chain_498,blat.proc3829877.chain_499,blat.proc3829877.chain_500	6
scaffold_5	alt_donor	3914526	3914527	+	asmbl_43918	none	STRG.5854.1,blat.proc3829873.chain_2024	2	STRG.5854.2	1
scaffold_6	ends_in_intron	2865010	2865010	+	asmbl_46724	none	blat.proc3829873.chain_3407	1	STRG.7272.1,STRG.7272.2,STRG.7272.3,Trinity_GG_4000_c1_g1_i1,blat.proc3829873.chain_3408	5
scaffold_6	alternate_exon	9131158	9134832	+	asmbl_47153,asmbl_47154,asmbl_47155,asmbl_47156,asmbl_47157	none	STRG.7784.1,STRG.7784.2,blat.proc3829875.chain_195,blat.proc3829875.chain_198,blat.proc3829875.chain_201	5	STRG.7784.5	1
scaffold_26	spliced_intron	9044430	9044639	+	asmbl_35724,asmbl_35727	none	STRG.28452.1,STRG.28452.2,Trinity_GG_15751_c0_g1_i1,blat.proc3829885.chain_1495	4	Trinity_GG_15751_c0_g1_i2,blat.proc3829885.chain_1494	2
scaffold_20	retained_exon	11481215	11482530	+	asmbl_26207	none	Trinity_GG_13053_c0_g1_i4,blat.proc3829883.chain_717	2	STRG.23639.3,blat.proc3829883.chain_715	2
scaffold_27	ends_in_intron	4005284	4005284	+	asmbl_36208,asmbl_36210,asmbl_36212	none	STRG.28848.2,STRG.28848.3,blat.proc3829885.chain_1939	3	Trinity_GG_15970_c0_g1_i5,blat.proc3829885.chain_1935,blat.proc3829885.chain_1937,blat.proc3829885.chain_1938	4
scaffold_5	alt_donor	16285430	16285431	+	asmbl_44734,asmbl_44735	none	Trinity_GG_3715_c0_g1_i3,Trinity_GG_3715_c0_g1_i6,blat.proc3829873.chain_2925,blat.proc3829873.chain_2926	4	Trinity_GG_3715_c0_g1_i5,blat.proc3829873.chain_2927	2
scaffold_5	starts_in_intron	7820806	7820806	+	asmbl_44178	none	Trinity_GG_3365_c0_g1_i1,blat.proc3829873.chain_2310	2	STRG.6154.1,blat.proc3829873.chain_2309	2
scaffold_23	spliced_intron	2326610	2326740	-	asmbl_31451	none	blat.proc3829899.chain_2745	1	STRG.25683.1,Trinity_GG_31350_c0_g1_i2,Trinity_GG_34063_c0_g1_i1,blat.proc3829899.chain_2744	4
scaffold_23	retained_exon	7915793	7916870	-	asmbl_31774	none	STRG.26078.2,blat.proc3829899.chain_3204	2	STRG.26078.4,blat.proc3829899.chain_3208	2
scaffold_13	ends_in_intron	15190245	15190245	-	asmbl_10195	none	blat.proc3829895.chain_1259	1	STRG.16548.1,blat.proc3829895.chain_1258	2
scaffold_28	alt_acceptor	9157360	9157361	+	asmbl_38469	none	STRG.29933.1,blat.proc3829885.chain_2931	2	STRG.29933.2	1
scaffold_11	alternate_exon	4773768	4775415	-	asmbl_6609	none	STRG.13560.2,Trinity_GG_24575_c1_g1_i1,blat.proc3829893.chain_1978	3	STRG.13560.1,blat.proc3829893.chain_1977	2
scaffold_6	skipped_exon	14593384	14594419	+	asmbl_47566	none	STRG.8213.1,blat.proc3829875.chain_640	2	STRG.8213.3	1
scaffold_16	retained_intron	4597484	4597636	-	asmbl_16238	none	blat.proc3829897.chain_272	1	STRG.19233.1,blat.proc3829897.chain_273	2
scaffold_19	ends_in_intron	12114941	12114941	+	asmbl_22552	none	Trinity_GG_12433_c0_g1_i1,blat.proc3829881.chain_3421	2	STRG.22524.1,Trinity_GG_12433_c0_g1_i2,blat.proc3829881.chain_3420	3
scaffold_11	starts_in_intron	8637222	8637222	+	asmbl_5781	none	Trinity_GG_7632_c0_g1_i4,blat.proc3829877.chain_2335	2	STRG.13877.1,Trinity_GG_7632_c0_g1_i3,blat.proc3829877.chain_2334	3
scaffold_6	ends_in_intron	7171808	7171808	+	asmbl_46986	none	blat.proc3829873.chain_3738	1	STRG.7621.1,STRG.7621.2,STRG.7621.3,STRG.7621.4,blat.proc3829873.chain_3739	5
scaffold_26	alt_acceptor	9772903	9772904	+	asmbl_35779,asmbl_35782,asmbl_35784,asmbl_35788	none	STRG.28501.1,STRG.28501.6,blat.proc3829885.chain_1432,blat.proc3829885.chain_1437	4	STRG.28501.10,STRG.28501.5,blat.proc3829885.chain_1434	3
scaffold_2	ends_in_intron	13897323	13897323	-	asmbl_23553	none	blat.proc3829887.chain_2287	1	STRG.2382.1,STRG.2382.2,blat.proc3829887.chain_2289,blat.proc3829887.chain_2290	4
scaffold_17	retained_intron	9531820	9532877	+	asmbl_18235,asmbl_18236	none	blat.proc3829881.chain_1349,blat.proc3829881.chain_1353	2	STRG.20566.3,Trinity_GG_11250_c0_g1_i3,blat.proc3829881.chain_1351	3
scaffold_11	starts_in_intron	8727776	8727776	+	asmbl_5797	none	blat.proc3829877.chain_2406	1	STRG.13889.2,STRG.13889.5,Trinity_GG_7670_c1_g1_i1,blat.proc3829877.chain_2407	4
scaffold_6	alt_donor	3320656	3320657	-	asmbl_48192	none	STRG.7329.1,blat.proc3829889.chain_3343	2	STRG.7329.2,STRG.7329.4,blat.proc3829889.chain_3342	3
scaffold_5	retained_intron	14262861	14263018	+	asmbl_44582,asmbl_44589	none	blat.proc3829873.chain_2765,blat.proc3829873.chain_2770	2	STRG.6629.1,STRG.6629.3,blat.proc3829873.chain_2764,blat.proc3829873.chain_2769,blat.proc3829873.chain_2771	5
scaffold_20	skipped_exon	9968528	9969979	+	asmbl_26071	none	STRG.23527.1,Trinity_GG_12980_c0_g1_i2,blat.proc3829883.chain_597	3	STRG.23527.2,blat.proc3829883.chain_596	2
scaffold_10	retained_intron	13300842	13301043	+	asmbl_4864	none	blat.proc3829877.chain_1483	1	STRG.12927.1,blat.proc3829877.chain_1482,blat.proc3829877.chain_1484	3
scaffold_10	alternate_exon	10284848	10285058	-	asmbl_3617	none	STRG.12709.2	1	STRG.12709.3,blat.proc3829893.chain_1236	2
scaffold_12	retained_intron	5452318	5452775	-	asmbl_7626	none	STRG.14687.1	1	STRG.14687.2	1
scaffold_2	starts_in_intron	18612561	18612561	-	asmbl_23817	none	STRG.2736.3	1	blat.proc3829887.chain_2514,blat.proc3829887.chain_2515,blat.proc3829887.chain_2516	3
scaffold_24	alternate_exon	2962922	2965098	-	asmbl_32795	none	STRG.26485.1,blat.proc3829899.chain_3494,blat.proc3829899.chain_3495	3	STRG.26485.2	1
scaffold_25	starts_in_intron	5694841	5694841	-	asmbl_34253	none	blat.proc3829901.chain_778	1	STRG.27451.1,blat.proc3829901.chain_776,blat.proc3829901.chain_777,blat.proc3829901.chain_780	4
scaffold_2	starts_in_intron	5196974	5196974	-	asmbl_23168	none	STRG.1937.1,blat.proc3829887.chain_1835	2	STRG.1937.2,blat.proc3829887.chain_1834	2
scaffold_8	skipped_exon	16656073	16657032	+	asmbl_52454	none	STRG.10631.1,Trinity_GG_5908_c0_g1_i1,blat.proc3829875.chain_3134	3	STRG.10631.2,Trinity_GG_5908_c0_g1_i2,blat.proc3829875.chain_3133	3
scaffold_6	retained_intron	7516477	7517141	-	asmbl_48434	none	STRG.7647.2,blat.proc3829889.chain_3681	2	STRG.7647.4,blat.proc3829889.chain_3680	2
scaffold_2	ends_in_intron	3898542	3898542	+	asmbl_24339	none	Trinity_GG_1005_c1_g1_i1,blat.proc3829871.chain_1845	2	STRG.1831.1,STRG.1831.2,blat.proc3829871.chain_1839,blat.proc3829871.chain_1841,blat.proc3829871.chain_1842	5
scaffold_3	alt_donor	18119071	18119072	+	asmbl_40684	none	STRG.4022.2	1	STRG.4022.1	1
scaffold_13	alt_acceptor	5869687	5869688	-	asmbl_9701	none	STRG.15884.1	1	STRG.15884.2,blat.proc3829895.chain_652	2
scaffold_2	starts_in_intron	10878495	10878495	+	asmbl_24775	none	Trinity_GG_1275_c3_g1_i1,blat.proc3829871.chain_2381	2	STRG.2242.1,Trinity_GG_1275_c0_g1_i6,blat.proc3829871.chain_2376,blat.proc3829871.chain_2377	4
scaffold_14	spliced_intron	15464262	15464367	+	asmbl_12584	none	STRG.17770.1,Trinity_GG_9767_c1_g1_i1,blat.proc3829879.chain_2441	3	Trinity_GG_9767_c1_g1_i2,blat.proc3829879.chain_2442	2
scaffold_21	alt_acceptor	11992093	11992094	-	asmbl_28169	none	STRG.24637.1,Trinity_GG_30779_c0_g1_i1,blat.proc3829899.chain_1753	3	STRG.24637.2	1
scaffold_1	alternate_exon	16859385	16859444	+	asmbl_2493	none	blat.proc3829871.chain_1283	1	STRG.1186.2	1
scaffold_2	spliced_intron	943318	943692	+	asmbl_24185	none	Trinity_GG_901_c3_g1_i1,blat.proc3829871.chain_1657	2	Trinity_GG_901_c3_g1_i2,blat.proc3829871.chain_1658	2
scaffold_12	alt_donor	10391272	10391273	-	asmbl_7879	none	STRG.15000.2,blat.proc3829893.chain_3389	2	STRG.15000.1,blat.proc3829893.chain_3390	2
scaffold_10	alt_donor	9375633	9375634	+	asmbl_4650	none	STRG.12680.1	1	blat.proc3829877.chain_1199	1
scaffold_4	alt_donor	5648908	5648909	-	asmbl_41369	none	STRG.4469.4	1	STRG.4469.2,STRG.4469.3,blat.proc3829889.chain_614,blat.proc3829889.chain_619	4
scaffold_10	skipped_exon	1490744	1492348	-	asmbl_2976	none	STRG.12017.1,blat.proc3829893.chain_394	2	STRG.12017.2,blat.proc3829893.chain_390,blat.proc3829893.chain_392	3
scaffold_2	spliced_intron	15271155	15271232	+	asmbl_25032,asmbl_25035,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25043,asmbl_25044,asmbl_25045	none	STRG.2481.1,blat.proc3829871.chain_2524,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2536,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	10	blat.proc3829871.chain_2528,blat.proc3829871.chain_2535	2
scaffold_2	alt_acceptor	5901398	5901399	-	asmbl_23190	none	STRG.1974.2,blat.proc3829887.chain_1819	2	STRG.1974.1,Trinity_GG_18104_c0_g1_i2,blat.proc3829887.chain_1818	3
scaffold_6	retained_exon	9011668	9011737	+	asmbl_47127,asmbl_47128	none	STRG.7773.1,STRG.7773.2,blat.proc3829875.chain_152,blat.proc3829875.chain_153	4	STRG.7773.3	1
scaffold_17	alt_donor	9621536	9621537	-	asmbl_19234	none	STRG.20572.1,Trinity_GG_28560_c0_g1_i2,blat.proc3829897.chain_1496	3	STRG.20572.2,Trinity_GG_28560_c0_g1_i1,blat.proc3829897.chain_1495	3
scaffold_23	alternate_exon	5080495	5080665	-	asmbl_31602	none	blat.proc3829899.chain_2989	1	STRG.25871.2,blat.proc3829899.chain_2987	2
scaffold_1	alternate_exon	5997451	5998931	-	asmbl_319	none	blat.proc3829887.chain_311	1	STRG.403.3,blat.proc3829887.chain_308,blat.proc3829887.chain_312	3
scaffold_5	skipped_exon	5608152	5608962	+	asmbl_44016	none	STRG.5977.1,blat.proc3829873.chain_2066	2	STRG.5977.2	1
scaffold_9	alt_acceptor	15207822	15207823	-	asmbl_55477	none	STRG.11719.3	1	STRG.11719.1,STRG.11719.2,blat.proc3829893.chain_58,blat.proc3829893.chain_59	4
scaffold_5	alternate_exon	12472769	12477612	-	asmbl_45835	none	STRG.6477.1,blat.proc3829889.chain_2533	2	STRG.6477.2,blat.proc3829889.chain_2532	2
scaffold_23	alt_donor	2164416	2164417	-	asmbl_31422	none	STRG.25669.4	1	STRG.25669.1	1
scaffold_2	starts_in_intron	18720475	18720475	+	asmbl_25273	none	blat.proc3829871.chain_2920	1	STRG.2750.1	1
scaffold_9	spliced_intron	12637304	12637387	+	asmbl_54434	none	Trinity_GG_6469_c2_g2_i2,blat.proc3829877.chain_361	2	STRG.11574.1,STRG.11574.3,STRG.11574.5,Trinity_GG_6469_c2_g1_i1,blat.proc3829877.chain_360	5
scaffold_15	starts_in_intron	11409593	11409593	-	asmbl_15524	none	blat.proc3829895.chain_3397	1	STRG.18604.1,STRG.18604.3,blat.proc3829895.chain_3392	3
scaffold_6	spliced_intron	3564649	3564671	-	asmbl_48215	none	STRG.7359.2	1	STRG.7359.1,Trinity_GG_21139_c0_g1_i1	2
scaffold_1	alternate_exon	18524215	18524340	-	asmbl_1119	none	blat.proc3829887.chain_1160	1	STRG.1299.1,blat.proc3829887.chain_1158	2
scaffold_6	alternate_exon	18688609	18688652	+	asmbl_47783	none	STRG.8528.1,Trinity_GG_4699_c0_g1_i2,blat.proc3829875.chain_959	3	STRG.8528.2	1
scaffold_5	retained_intron	19648196	19648470	+	asmbl_44981	none	STRG.7045.1,Trinity_GG_3864_c0_g1_i2,Trinity_GG_3864_c0_g1_i3,Trinity_GG_3864_c0_g1_i4,blat.proc3829873.chain_3172,blat.proc3829873.chain_3173,blat.proc3829873.chain_3174	7	STRG.7045.2	1
scaffold_5	starts_in_intron	9545228	9545228	-	asmbl_45669	none	blat.proc3829889.chain_2361	1	STRG.6262.1,blat.proc3829889.chain_2360	2
scaffold_1	spliced_intron	11173731	11174990	+	asmbl_2074,asmbl_2075	none	STRG.743.2,blat.proc3829871.chain_814	2	STRG.743.1,blat.proc3829871.chain_818,blat.proc3829871.chain_820,blat.proc3829871.chain_821,blat.proc3829871.chain_825	5
scaffold_26	spliced_intron	5483268	5483396	+	asmbl_35520,asmbl_35521,asmbl_35522,asmbl_35523,asmbl_35524	none	STRG.28234.1,STRG.28234.2,STRG.28234.3,STRG.28234.4,Trinity_GG_15611_c0_g1_i5	5	Trinity_GG_15611_c0_g1_i4,blat.proc3829885.chain_1257	2
scaffold_1	alt_donor	18029478	18029479	-	asmbl_1075	none	blat.proc3829871.chain_1253	1	STRG.1264.4	1
scaffold_11	starts_in_intron	17374420	17374420	+	asmbl_6205	none	STRG.14392.2	1	STRG.14392.1,blat.proc3829877.chain_2826	2
scaffold_10	starts_in_intron	5750529	5750529	-	asmbl_3300	none	blat.proc3829893.chain_839	1	STRG.12399.1,STRG.12399.2,blat.proc3829893.chain_836,blat.proc3829893.chain_837,blat.proc3829893.chain_840	5
scaffold_12	starts_in_intron	2661857	2661857	+	asmbl_8470	none	blat.proc3829877.chain_2971	1	blat.proc3829877.chain_2972	1
scaffold_21	starts_in_intron	1282493	1282493	-	asmbl_27424	none	blat.proc3829899.chain_833	1	STRG.23792.1,Trinity_GG_30251_c1_g1_i3,blat.proc3829899.chain_834	3
scaffold_11	retained_intron	9018786	9019232	-	asmbl_6887	none	Trinity_GG_24749_c0_g2_i1,blat.proc3829893.chain_2280	2	STRG.13926.1,STRG.13926.2,blat.proc3829893.chain_2276,blat.proc3829893.chain_2277,blat.proc3829893.chain_2278,blat.proc3829893.chain_2279	6
scaffold_11	alt_donor	15668765	15668766	-	asmbl_7185	none	STRG.14296.1,blat.proc3829893.chain_2670	2	STRG.14296.2,blat.proc3829893.chain_2669	2
scaffold_6	alt_acceptor	17835561	17835562	-	asmbl_49140	none	STRG.8465.2	1	STRG.8465.1,blat.proc3829891.chain_756	2
scaffold_15	alt_acceptor	4520329	4520330	-	asmbl_15154	none	STRG.18169.2	1	STRG.18169.1	1
scaffold_14	alt_donor	151903	151904	-	asmbl_12758,asmbl_12759,asmbl_12762	none	STRG.16700.2,STRG.16700.3,Trinity_GG_26353_c0_g1_i4,blat.proc3829895.chain_1384,blat.proc3829895.chain_1385,blat.proc3829895.chain_1386	6	STRG.16700.4	1
scaffold_17	starts_in_intron	1410807	1410807	-	asmbl_18754	none	STRG.19966.2,blat.proc3829893.chain_425,blat.proc3829897.chain_956	3	STRG.19966.1,blat.proc3829897.chain_955	2
scaffold_8	ends_in_intron	1407906	1407906	-	asmbl_52696	none	blat.proc3829891.chain_1966	1	STRG.9753.1,blat.proc3829891.chain_1964,blat.proc3829891.chain_1965	3
scaffold_13	retained_intron	3264401	3264477	+	asmbl_10659	none	blat.proc3829879.chain_335	1	STRG.15620.1,blat.proc3829879.chain_336,blat.proc3829879.chain_337	3
scaffold_15	alt_acceptor	15163492	15163493	+	asmbl_14670	none	STRG.18897.1,blat.proc3829879.chain_3388	2	STRG.18897.2	1
scaffold_27	ends_in_intron	3999602	3999602	+	asmbl_36209	none	blat.proc3829885.chain_1940	1	STRG.28848.2,Trinity_GG_15970_c0_g1_i5,blat.proc3829885.chain_1937,blat.proc3829885.chain_1938,blat.proc3829885.chain_1939	5
scaffold_22	alt_acceptor	25385	25386	+	asmbl_29093	none	Trinity_GG_13608_c0_g1_i2,blat.proc3829883.chain_1665	2	STRG.24646.1,STRG.24646.2,Trinity_GG_13608_c0_g1_i1,Trinity_GG_13608_c0_g1_i4,blat.proc3829883.chain_1666,blat.proc3829883.chain_1667	6
scaffold_3	starts_in_intron	18336391	18336391	-	asmbl_39558	none	blat.proc3829889.chain_107	1	STRG.4035.1	1
scaffold_20	ends_in_intron	10911985	10911985	-	asmbl_27052	none	Trinity_GG_30155_c0_g1_i3,blat.proc3829899.chain_587	2	STRG.23603.1,blat.proc3829899.chain_586	2
scaffold_16	retained_intron	12642114	12642264	-	asmbl_16576	none	Trinity_GG_28047_c0_g1_i6,blat.proc3829897.chain_654	2	STRG.19744.2,blat.proc3829897.chain_656	2
scaffold_10	retained_intron	975363	975513	-	asmbl_2938	none	Trinity_GG_23642_c0_g1_i5,blat.proc3829893.chain_361	2	STRG.11970.1,Trinity_GG_23642_c0_g1_i1,Trinity_GG_23642_c0_g1_i2	3
scaffold_14	alt_donor	2850221	2850222	+	asmbl_11861	none	STRG.16869.2	1	STRG.16869.1,Trinity_GG_9279_c0_g1_i1,blat.proc3829879.chain_1582	3
scaffold_22	ends_in_intron	9157183	9157183	-	asmbl_30284,asmbl_30285	none	Trinity_GG_31086_c0_g1_i2,blat.proc3829899.chain_2273	2	STRG.25232.1,STRG.25232.2,blat.proc3829899.chain_2274	3
scaffold_5	retained_intron	5064190	5064837	-	asmbl_45416	none	Trinity_GG_20370_c0_g1_i1,blat.proc3829889.chain_2048	2	STRG.5956.1,STRG.5956.2,Trinity_GG_20370_c0_g1_i3,blat.proc3829889.chain_2047,blat.proc3829889.chain_2049	5
scaffold_17	alternate_exon	8649623	8650783	-	asmbl_19158	none	STRG.20471.2	1	STRG.20471.1	1
scaffold_25	ends_in_intron	4875869	4875869	+	asmbl_33540	none	Trinity_GG_15110_c0_g2_i1,blat.proc3829885.chain_435	2	STRG.27405.1,STRG.27405.2,Trinity_GG_15110_c0_g1_i2,blat.proc3829885.chain_434	4
scaffold_7	ends_in_intron	12366159	12366159	-	asmbl_50011	none	Trinity_GG_22270_c0_g1_i1,blat.proc3829891.chain_1573	2	STRG.9323.1,blat.proc3829891.chain_1575	2
scaffold_340	ends_in_intron	4605	4605	+	asmbl_40969	none	Trinity_GG_16762_c0_g2_i1	1	Trinity_GG_16762_c0_g1_i1,blat.proc3829885.chain_3305	2
scaffold_28	alternate_exon	7306229	7306292	-	asmbl_37721	none	STRG.29781.3	1	STRG.29781.4	1
scaffold_5	spliced_intron	188214	188267	+	asmbl_43750,asmbl_43751	none	STRG.5581.3,STRG.5581.4	2	STRG.5581.1,STRG.5581.2	2
scaffold_25	alt_acceptor	4441856	4441857	+	asmbl_33492	none	STRG.27356.2,Trinity_GG_15095_c0_g1_i3,blat.proc3829885.chain_404	3	STRG.27356.1	1
scaffold_13	spliced_intron	3704479	3704514	-	asmbl_9523,asmbl_9525,asmbl_9526,asmbl_9527	none	STRG.15671.1,STRG.15671.3,STRG.15671.4,STRG.15671.5	4	STRG.15671.6	1
scaffold_14	alt_acceptor	7508205	7508206	-	asmbl_13206	none	blat.proc3829895.chain_1868	1	STRG.17180.1,STRG.17180.2,blat.proc3829895.chain_1866,blat.proc3829895.chain_1869,blat.proc3829895.chain_1870	5
scaffold_10	starts_in_intron	9684320	9684320	-	asmbl_3606	none	blat.proc3829893.chain_1193	1	STRG.12696.1,blat.proc3829893.chain_1194	2
scaffold_20	ends_in_intron	6620090	6620090	+	asmbl_25819	none	blat.proc3829883.chain_282	1	STRG.23224.1,blat.proc3829883.chain_281	2
scaffold_25	alternate_exon	7939740	7939829	+	asmbl_33696	none	STRG.27604.2	1	STRG.27604.1,Trinity_GG_15225_c0_g1_i1,blat.proc3829885.chain_628	3
scaffold_8	spliced_intron	13132405	13133848	-	asmbl_53274	none	STRG.10481.1	1	STRG.10481.2,blat.proc3829891.chain_2640,blat.proc3829891.chain_2641	3
scaffold_2	starts_in_intron	1328919	1328919	+	asmbl_24209	none	STRG.1605.4,blat.proc3829871.chain_1704	2	STRG.1605.3,blat.proc3829871.chain_1703	2
scaffold_7	alt_acceptor	1237960	1237961	+	asmbl_50485	none	STRG.8627.8	1	STRG.8627.2,STRG.8627.3,STRG.8627.7,STRG.8627.9,Trinity_GG_4740_c1_g1_i1,Trinity_GG_4740_c1_g1_i2	6
scaffold_15	spliced_intron	15409801	15410182	+	asmbl_14716	none	STRG.18921.7,blat.proc3829879.chain_3514	2	blat.proc3829879.chain_3516	1
scaffold_11	retained_exon	8478806	8478871	+	asmbl_5746	none	STRG.13851.1,Trinity_GG_7647_c0_g1_i5,blat.proc3829877.chain_2362	3	STRG.13851.2,Trinity_GG_7647_c0_g1_i2,blat.proc3829877.chain_2360	3
scaffold_23	starts_in_intron	5845378	5845378	-	asmbl_31668	none	Trinity_GG_31526_c0_g1_i2,blat.proc3829899.chain_3055	2	STRG.25934.1,Trinity_GG_31526_c0_g1_i1,blat.proc3829899.chain_3056	3
scaffold_2	spliced_intron	15686210	15686390	+	asmbl_25091	none	STRG.2521.2,Trinity_GG_1432_c0_g1_i2,blat.proc3829871.chain_2714	3	blat.proc3829871.chain_2713	1
scaffold_20	alternate_exon	507541	507620	+	asmbl_25518	none	STRG.22741.2	1	STRG.22741.1,Trinity_GG_12562_c0_g1_i1,blat.proc3829881.chain_3673	3
scaffold_5	retained_intron	18255418	18255824	+	asmbl_44890	none	blat.proc3829873.chain_3128	1	STRG.6952.1,Trinity_GG_3839_c0_g1_i2,Trinity_GG_3839_c0_g1_i4,blat.proc3829873.chain_3127,blat.proc3829873.chain_3129	5
scaffold_13	spliced_intron	278905	279237	+	asmbl_10435,asmbl_10436,asmbl_10438,asmbl_10439,asmbl_10443	none	STRG.15416.1,STRG.15416.2,STRG.15416.3,STRG.15416.4,blat.proc3829879.chain_124,blat.proc3829879.chain_125,blat.proc3829879.chain_126,blat.proc3829879.chain_127	8	Trinity_GG_8495_c0_g1_i6,blat.proc3829879.chain_123	2
scaffold_7	spliced_intron	289521	289547	+	asmbl_50430,asmbl_50431	none	STRG.8593.1,STRG.8593.2	2	Trinity_GG_4731_c0_g1_i3,Trinity_GG_4731_c0_g1_i6	2
scaffold_21	alt_acceptor	3973278	3973279	-	asmbl_27587	none	STRG.23966.2	1	STRG.23966.1,blat.proc3829899.chain_1037	2
scaffold_1	starts_in_intron	4240100	4240100	+	asmbl_1647	none	Trinity_GG_131_c0_g1_i10,blat.proc3829871.chain_226	2	STRG.253.1,STRG.253.2,STRG.253.3,STRG.253.4,blat.proc3829871.chain_224,blat.proc3829871.chain_225,blat.proc3829871.chain_227,blat.proc3829871.chain_228,blat.proc3829871.chain_229,blat.proc3829871.chain_230,blat.proc3829871.chain_232,blat.proc3829871.chain_233	12
scaffold_13	alternate_exon	11586208	11586913	+	asmbl_11270,asmbl_11271	none	STRG.16295.4,blat.proc3829879.chain_1017	2	STRG.16295.1,blat.proc3829879.chain_1014,blat.proc3829879.chain_1023	3
scaffold_5	starts_in_intron	17330497	17330497	+	asmbl_44831	none	Trinity_GG_3785_c0_g1_i1,blat.proc3829873.chain_3023	2	Trinity_GG_3785_c0_g1_i2,Trinity_GG_3785_c0_g1_i4,blat.proc3829873.chain_3019,blat.proc3829873.chain_3022	4
scaffold_10	spliced_intron	6065331	6066224	+	asmbl_4508,asmbl_4509,asmbl_4510,asmbl_4511	none	STRG.12431.4,STRG.12431.5,blat.proc3829877.chain_1066,blat.proc3829877.chain_1068,blat.proc3829877.chain_1071	5	STRG.12431.1,STRG.12431.2,STRG.12431.3,Trinity_GG_6895_c0_g1_i2,blat.proc3829877.chain_1065,blat.proc3829877.chain_1067,blat.proc3829877.chain_1069,blat.proc3829877.chain_1070,blat.proc3829877.chain_1072,blat.proc3829877.chain_1073	10
scaffold_19	alt_acceptor	12973202	12973203	-	asmbl_21785,asmbl_21786,asmbl_21787,asmbl_21790,asmbl_21791	none	STRG.22606.2,STRG.22606.4,STRG.22606.5,Trinity_GG_29578_c0_g1_i1,Trinity_GG_29578_c0_g1_i2,Trinity_GG_29578_c0_g1_i6,Trinity_GG_29578_c0_g1_i8,blat.proc3829897.chain_3318,blat.proc3829897.chain_3320,blat.proc3829897.chain_3324,blat.proc3829897.chain_3325	11	STRG.22606.1	1
scaffold_4	spliced_intron	6300650	6300748	+	asmbl_42718,asmbl_42719,asmbl_42720,asmbl_42721	none	STRG.4502.1,Trinity_GG_2497_c0_g1_i1,Trinity_GG_2497_c0_g1_i6,Trinity_GG_2497_c0_g1_i8,Trinity_GG_2497_c0_g1_i9,blat.proc3829873.chain_863,blat.proc3829873.chain_866,blat.proc3829873.chain_868,blat.proc3829873.chain_870	9	blat.proc3829873.chain_865,blat.proc3829873.chain_867,blat.proc3829873.chain_871	3
scaffold_20	skipped_exon	3251565	3253888	-	asmbl_26614	none	STRG.23033.2,blat.proc3829899.chain_52	2	STRG.23033.1,blat.proc3829899.chain_51	2
scaffold_3	spliced_intron	14048563	14048700	+	asmbl_40458	none	STRG.3746.1	1	STRG.3746.2,blat.proc3829873.chain_155	2
scaffold_12	retained_intron	16338941	16339103	+	asmbl_9127	none	blat.proc3829877.chain_3727	1	STRG.15376.2,blat.proc3829877.chain_3728	2
scaffold_4	spliced_intron	17805603	17805997	+	asmbl_43414,asmbl_43418	none	STRG.5378.2,blat.proc3829873.chain_1628	2	blat.proc3829873.chain_1626	1
scaffold_15	retained_intron	14893299	14893410	+	asmbl_14653,asmbl_14654	none	STRG.18890.1,STRG.18890.2,Trinity_GG_10355_c0_g1_i5,Trinity_GG_10355_c0_g1_i7,blat.proc3829879.chain_3462,blat.proc3829879.chain_3463,blat.proc3829879.chain_3465	7	STRG.18890.3,blat.proc3829879.chain_3464	2
scaffold_5	retained_intron	9086493	9086579	+	asmbl_44260	none	Trinity_GG_3425_c0_g1_i2,blat.proc3829873.chain_2420	2	STRG.6237.2,STRG.6237.3,Trinity_GG_3425_c0_g1_i4,blat.proc3829873.chain_2425	4
scaffold_24	ends_in_intron	9097048	9097048	-	asmbl_33123	none	blat.proc3829901.chain_178	1	STRG.26931.1,blat.proc3829901.chain_179,blat.proc3829901.chain_181	3
scaffold_7	starts_in_intron	12389416	12389416	-	asmbl_50016	none	blat.proc3829891.chain_1532	1	STRG.9328.1,blat.proc3829891.chain_1531,blat.proc3829891.chain_1533,blat.proc3829891.chain_1534,blat.proc3829891.chain_1535,blat.proc3829891.chain_1536,blat.proc3829891.chain_1537,blat.proc3829891.chain_1538	8
scaffold_6	alternate_exon	8172709	8174809	-	asmbl_48474	none	Trinity_GG_21366_c0_g1_i3,blat.proc3829889.chain_3717	2	blat.proc3829889.chain_3715	1
scaffold_4	retained_intron	5651119	5651696	-	asmbl_41355,asmbl_41361,asmbl_41368	none	STRG.4469.1,blat.proc3829889.chain_606,blat.proc3829889.chain_609	3	STRG.4469.3,blat.proc3829889.chain_607	2
scaffold_6	alt_acceptor	19111185	19111186	+	asmbl_47820,asmbl_47821	none	STRG.8567.1,STRG.8567.2,Trinity_GG_4689_c0_g1_i1,Trinity_GG_4689_c0_g1_i2,blat.proc3829875.chain_940,blat.proc3829875.chain_941	6	STRG.8567.3	1
scaffold_28	spliced_intron	2199318	2199412	+	asmbl_38042,asmbl_38044	none	STRG.29369.2,STRG.29369.3,blat.proc3829885.chain_2470	3	STRG.29369.1,blat.proc3829885.chain_2468,blat.proc3829885.chain_2469	3
scaffold_16	retained_intron	6138194	6138347	-	asmbl_16320	none	blat.proc3829897.chain_389	1	STRG.19336.1,blat.proc3829897.chain_388	2
scaffold_7	alt_donor	16834246	16834247	+	asmbl_51358	none	STRG.9589.2	1	STRG.9589.1,blat.proc3829875.chain_2011,blat.proc3829875.chain_2012	3
scaffold_3	alt_acceptor	5003813	5003814	+	asmbl_40017	none	STRG.3199.1	1	STRG.3199.2,STRG.3199.3	2
scaffold_9	alt_acceptor	5528965	5528966	+	asmbl_54036,asmbl_54038	none	STRG.11121.1,Trinity_GG_6215_c0_g1_i4,Trinity_GG_6215_c0_g1_i5,blat.proc3829875.chain_3647	4	STRG.11121.2,STRG.11121.3,STRG.11121.4,Trinity_GG_6215_c0_g1_i2,blat.proc3829875.chain_3648	5
scaffold_23	starts_in_intron	5584006	5584006	+	asmbl_30883	none	Trinity_GG_14263_c0_g1_i2,blat.proc3829883.chain_2730	2	STRG.25912.1,STRG.25912.2,STRG.25912.3,STRG.25912.4,Trinity_GG_14263_c0_g1_i1,blat.proc3829883.chain_2728,blat.proc3829883.chain_2729	7
scaffold_13	alt_acceptor	5131769	5131770	+	asmbl_10806,asmbl_10807,asmbl_10810	none	STRG.15801.1,STRG.15801.3,blat.proc3829879.chain_497,blat.proc3829879.chain_499	4	STRG.15801.2	1
scaffold_24	retained_exon	6784292	6784803	-	asmbl_32963	none	STRG.26713.4	1	STRG.26713.3	1
scaffold_6	spliced_intron	187756	187786	+	asmbl_46591	none	STRG.7073.2	1	STRG.7073.1,Trinity_GG_3914_c1_g1_i1,Trinity_GG_3914_c1_g1_i2,blat.proc3829873.chain_3244,blat.proc3829873.chain_3245	5
scaffold_15	retained_intron	15434376	15435512	-	asmbl_15797,asmbl_15798	none	STRG.18920.1,STRG.18920.3,Trinity_GG_27606_c0_g1_i4,Trinity_GG_27606_c0_g1_i5,blat.proc3829895.chain_3632,blat.proc3829895.chain_3634	6	STRG.18920.2,blat.proc3829895.chain_3631,blat.proc3829895.chain_3633	3
scaffold_8	alt_donor	11270823	11270824	-	asmbl_53138	none	STRG.10329.2,blat.proc3829891.chain_2491	2	STRG.10329.1,STRG.10329.3,blat.proc3829891.chain_2492	3
scaffold_18	ends_in_intron	7498058	7498058	-	asmbl_19979	none	Trinity_GG_28963_c0_g1_i1,blat.proc3829897.chain_2203	2	STRG.21435.1,Trinity_GG_28963_c0_g2_i2,blat.proc3829897.chain_2204	3
scaffold_15	alt_donor	6783961	6783962	-	asmbl_15269	none	blat.proc3829895.chain_3038	1	STRG.18284.1,blat.proc3829895.chain_3037	2
scaffold_10	ends_in_intron	10425068	10425068	-	asmbl_3635,asmbl_3637	none	STRG.12721.3,Trinity_GG_24127_c0_g1_i2,Trinity_GG_24127_c0_g1_i3,blat.proc3829893.chain_1225,blat.proc3829893.chain_1226	5	STRG.12721.1,STRG.12721.2,blat.proc3829893.chain_1224	3
scaffold_21	alt_acceptor	2999543	2999544	+	asmbl_28454	none	STRG.23909.2	1	STRG.23909.1,blat.proc3829883.chain_1085	2
scaffold_9	alt_donor	119321	119322	+	asmbl_53733	none	STRG.10764.2,blat.proc3829875.chain_3264	2	STRG.10764.1	1
scaffold_8	retained_exon	9128802	9128916	-	asmbl_53004,asmbl_53007,asmbl_53008	none	STRG.10161.2,blat.proc3829891.chain_2335,blat.proc3829891.chain_2336	3	STRG.10161.1	1
scaffold_20	retained_intron	10384363	10384687	+	asmbl_26112	none	blat.proc3829883.chain_590	1	Trinity_GG_12979_c0_g1_i5,blat.proc3829883.chain_592	2
scaffold_14	alternate_exon	15043956	15044003	-	asmbl_13687	none	STRG.17719.1	1	STRG.17719.2	1
scaffold_10	ends_in_intron	9548456	9548456	+	asmbl_4679	none	Trinity_GG_7015_c0_g1_i2,blat.proc3829877.chain_1285	2	Trinity_GG_7015_c0_g1_i7,blat.proc3829877.chain_1284	2
scaffold_6	retained_intron	12415798	12415973	-	asmbl_48736,asmbl_48737,asmbl_48738,asmbl_48740	none	STRG.7990.1,STRG.7990.2,STRG.7990.3,STRG.7990.5,blat.proc3829891.chain_292,blat.proc3829891.chain_293,blat.proc3829891.chain_294	7	STRG.7990.4	1
scaffold_15	alt_donor	4984029	4984030	-	asmbl_15186,asmbl_15189	none	STRG.18197.1,STRG.18197.3,blat.proc3829895.chain_2985,blat.proc3829895.chain_2986	4	blat.proc3829895.chain_2987	1
scaffold_5	retained_exon	13235395	13235505	+	asmbl_44538	none	STRG.6553.3	1	STRG.6553.1,STRG.6553.2,blat.proc3829873.chain_2683,blat.proc3829873.chain_2685	4
scaffold_10	retained_intron	13458240	13458388	-	asmbl_3784	none	STRG.12925.2,blat.proc3829893.chain_1409	2	STRG.12925.3	1
scaffold_14	alt_acceptor	3154560	3154561	+	asmbl_11879,asmbl_11880,asmbl_11881,asmbl_11883,asmbl_11885,asmbl_11886,asmbl_11893,asmbl_11894,asmbl_11895,asmbl_11896,asmbl_11897	none	STRG.16893.1,STRG.16893.3,blat.proc3829879.chain_1625,blat.proc3829879.chain_1626,blat.proc3829879.chain_1628,blat.proc3829879.chain_1629,blat.proc3829879.chain_1630,blat.proc3829879.chain_1631,blat.proc3829879.chain_1632,blat.proc3829879.chain_1634,blat.proc3829879.chain_1635,blat.proc3829879.chain_1636,blat.proc3829879.chain_1638	13	STRG.16893.2,blat.proc3829879.chain_1637,blat.proc3829879.chain_1639	3
scaffold_13	alt_donor	3699690	3699691	+	asmbl_10704	none	STRG.15670.1,Trinity_GG_8604_c0_g1_i2,blat.proc3829879.chain_352	3	STRG.15670.2	1
scaffold_20	spliced_intron	8340131	8340449	-	asmbl_26900,asmbl_26901,asmbl_26904,asmbl_26905,asmbl_26906,asmbl_26907	none	STRG.23364.1,STRG.23364.2,STRG.23364.3,blat.proc3829899.chain_431,blat.proc3829899.chain_432,blat.proc3829899.chain_433,blat.proc3829899.chain_434,blat.proc3829899.chain_435	8	blat.proc3829899.chain_430	1
scaffold_22	alt_donor	1002984	1002985	+	asmbl_29206,asmbl_29210	none	STRG.24742.3,blat.proc3829883.chain_1808	2	STRG.24742.1,STRG.24742.2,Trinity_GG_13691_c0_g1_i6,blat.proc3829883.chain_1807,blat.proc3829883.chain_1810,blat.proc3829883.chain_1811	6
scaffold_22	retained_intron	10983933	10984017	-	asmbl_30407	none	STRG.25414.5,Trinity_GG_31214_c0_g1_i3,blat.proc3829899.chain_2488	3	STRG.25414.2,STRG.25414.4,Trinity_GG_31214_c0_g1_i1,Trinity_GG_31214_c0_g1_i2,Trinity_GG_31214_c0_g1_i4,Trinity_GG_31214_c0_g1_i5,blat.proc3829899.chain_2487,blat.proc3829899.chain_2489,blat.proc3829899.chain_2490,blat.proc3829899.chain_2491	10
scaffold_2	retained_exon	1616827	1616879	-	asmbl_22885	none	STRG.1647.2,blat.proc3829887.chain_1449,blat.proc3829887.chain_1450	3	blat.proc3829887.chain_1451	1
scaffold_17	retained_intron	9447461	9447558	+	asmbl_18211	none	Trinity_GG_11275_c0_g1_i11,blat.proc3829881.chain_1391	2	STRG.20557.1,Trinity_GG_11275_c0_g1_i4,Trinity_GG_11275_c0_g1_i8,blat.proc3829881.chain_1392,blat.proc3829881.chain_1394	5
scaffold_1	alt_acceptor	3680405	3680406	+	asmbl_1624,asmbl_1626	none	STRG.237.1,STRG.237.3,blat.proc3829871.chain_293	3	STRG.237.2,blat.proc3829871.chain_290,blat.proc3829871.chain_291	3
scaffold_20	alternate_exon	427704	427942	+	asmbl_25507	none	STRG.22729.5	1	STRG.22729.1	1
scaffold_6	retained_intron	3057252	3057331	+	asmbl_46751,asmbl_46752	none	blat.proc3829873.chain_3445,blat.proc3829873.chain_3446	2	STRG.7308.1,STRG.7308.2,blat.proc3829873.chain_3438,blat.proc3829873.chain_3440,blat.proc3829873.chain_3441,blat.proc3829873.chain_3442,blat.proc3829873.chain_3444	7
scaffold_25	alt_acceptor	9047055	9047056	-	asmbl_34447	none	STRG.27702.1,blat.proc3829901.chain_982,blat.proc3829901.chain_985,blat.proc3829901.chain_986	4	STRG.27702.3,blat.proc3829901.chain_988	2
scaffold_18	spliced_intron	8865798	8865880	-	asmbl_20060,asmbl_20061,asmbl_20062,asmbl_20065,asmbl_20066	none	STRG.21541.1,STRG.21541.2,STRG.21541.3,blat.proc3829897.chain_2356,blat.proc3829897.chain_2358,blat.proc3829897.chain_2359,blat.proc3829897.chain_2360	7	blat.proc3829897.chain_2357,blat.proc3829897.chain_2362	2
scaffold_13	alt_donor	7014563	7014564	-	asmbl_9791	none	STRG.15993.1,blat.proc3829895.chain_656	2	STRG.15993.2	1
scaffold_16	alt_donor	9145719	9145720	+	asmbl_17258,asmbl_17261,asmbl_17264	none	STRG.19502.1,blat.proc3829881.chain_393,blat.proc3829881.chain_396,blat.proc3829881.chain_397	4	STRG.19502.2	1
scaffold_13	retained_exon	9553262	9553299	-	asmbl_9997	none	STRG.16206.2	1	STRG.16206.1,blat.proc3829895.chain_984	2
scaffold_17	alt_acceptor	9090254	9090255	-	asmbl_19196,asmbl_19198	none	STRG.20530.2,blat.proc3829897.chain_1482,blat.proc3829897.chain_1483	3	STRG.20530.1,STRG.20530.3	2
scaffold_12	alt_donor	12288531	12288532	-	asmbl_7988,asmbl_7991	none	STRG.15114.2,STRG.15114.6	2	STRG.15114.5	1
scaffold_27	retained_intron	2792841	2792968	+	asmbl_36068	none	STRG.28740.2	1	STRG.28740.1,blat.proc3829885.chain_1813,blat.proc3829885.chain_1814	3
scaffold_14	retained_intron	217693	217891	-	asmbl_12786,asmbl_12787,asmbl_12789,asmbl_12790	none	STRG.16705.1,STRG.16705.3,STRG.16705.4,blat.proc3829895.chain_1395,blat.proc3829895.chain_1397,blat.proc3829895.chain_1398,blat.proc3829895.chain_1399	7	STRG.16705.2,blat.proc3829895.chain_1396	2
scaffold_9	alt_donor	15392624	15392625	+	asmbl_54543	none	STRG.11731.1,Trinity_GG_6522_c1_g1_i1,blat.proc3829877.chain_446	3	STRG.11731.2,Trinity_GG_6522_c1_g1_i2,blat.proc3829877.chain_445	3
scaffold_14	alt_acceptor	8695879	8695880	-	asmbl_13320	none	blat.proc3829895.chain_2018	1	STRG.17289.2,blat.proc3829895.chain_2017	2
scaffold_11	ends_in_intron	6253484	6253484	+	asmbl_5583	none	STRG.13670.3	1	STRG.13670.1,STRG.13670.2,Trinity_GG_7547_c0_g1_i2,Trinity_GG_7547_c0_g1_i9,blat.proc3829877.chain_2179,blat.proc3829877.chain_2180,blat.proc3829877.chain_2181,blat.proc3829877.chain_2183	8
scaffold_28	retained_intron	5390808	5391042	+	asmbl_38280	none	STRG.29664.4,Trinity_GG_16450_c0_g1_i3,blat.proc3829885.chain_2785	3	STRG.29664.1,STRG.29664.2,Trinity_GG_16450_c0_g1_i2,blat.proc3829885.chain_2784,blat.proc3829885.chain_2786	5
scaffold_7	alt_donor	2310185	2310186	+	asmbl_50510,asmbl_50511	none	STRG.8659.1,STRG.8659.3,Trinity_GG_4762_c0_g1_i2,blat.proc3829875.chain_1092	4	STRG.8659.2	1
scaffold_17	spliced_intron	14349448	14349635	-	asmbl_19474,asmbl_19476	none	STRG.20903.2,blat.proc3829897.chain_1804,blat.proc3829897.chain_1805	3	blat.proc3829897.chain_1802	1
scaffold_14	retained_intron	6644100	6644388	-	asmbl_13129	none	blat.proc3829895.chain_1784	1	STRG.17095.1,STRG.17095.2,STRG.17095.3	3
scaffold_10	alt_donor	17701014	17701015	+	asmbl_5071	none	blat.proc3829893.chain_1653	1	blat.proc3829893.chain_1652	1
scaffold_2	alt_donor	3708145	3708146	+	asmbl_24326	none	STRG.1802.1	1	STRG.1802.3	1
scaffold_2	spliced_intron	15455311	15455409	+	asmbl_25063,asmbl_25064,asmbl_25065,asmbl_25066,asmbl_25067,asmbl_25069,asmbl_25070	none	STRG.2500.1,STRG.2500.2,blat.proc3829871.chain_2679,blat.proc3829871.chain_2680,blat.proc3829871.chain_2681,blat.proc3829871.chain_2682,blat.proc3829871.chain_2683,blat.proc3829871.chain_2685	8	blat.proc3829871.chain_2684	1
scaffold_22	retained_intron	958386	958490	+	asmbl_29201	none	Trinity_GG_13685_c0_g1_i2,blat.proc3829883.chain_1798	2	STRG.24728.1,Trinity_GG_13685_c0_g1_i3,blat.proc3829883.chain_1799	3
scaffold_28	retained_exon	4558738	4558973	-	asmbl_37536	none	STRG.29608.1	1	STRG.29608.2,blat.proc3829901.chain_2730	2
scaffold_20	alternate_exon	3259007	3259132	+	asmbl_25679	none	STRG.23041.2	1	STRG.23041.1,blat.proc3829883.chain_149	2
scaffold_14	spliced_intron	217693	217891	-	asmbl_12788	none	STRG.16705.2,blat.proc3829895.chain_1396	2	STRG.16705.1,STRG.16705.3,STRG.16705.4,blat.proc3829895.chain_1395,blat.proc3829895.chain_1397,blat.proc3829895.chain_1398,blat.proc3829895.chain_1399	7
scaffold_12	retained_exon	9236184	9236296	-	asmbl_7792,asmbl_7795,asmbl_7796,asmbl_7797	none	STRG.14912.4,STRG.14912.5,STRG.14912.7,blat.proc3829893.chain_3298	4	STRG.14912.2,STRG.14912.3,blat.proc3829893.chain_3301,blat.proc3829893.chain_3307	4
scaffold_20	retained_intron	7268277	7268638	+	asmbl_25871,asmbl_25872	none	STRG.23283.1,STRG.23283.3,blat.proc3829883.chain_360	3	STRG.23283.2,blat.proc3829883.chain_359	2
scaffold_3	spliced_intron	17362106	17362259	-	asmbl_39494,asmbl_39497,asmbl_39501,asmbl_39504	none	STRG.3972.1,blat.proc3829889.chain_22,blat.proc3829889.chain_25,blat.proc3829889.chain_31	4	STRG.3972.2,STRG.3972.3,STRG.3972.4,Trinity_GG_19202_c0_g1_i17,blat.proc3829889.chain_23,blat.proc3829889.chain_24,blat.proc3829889.chain_26,blat.proc3829889.chain_27,blat.proc3829889.chain_28	9
scaffold_27	alt_acceptor	3000380	3000381	+	asmbl_36110,asmbl_36111,asmbl_36113,asmbl_36117,asmbl_36119,asmbl_36122	none	STRG.28767.1,STRG.28767.2,STRG.28767.4,blat.proc3829885.chain_1838,blat.proc3829885.chain_1839,blat.proc3829885.chain_1841,blat.proc3829885.chain_1842,blat.proc3829885.chain_1843,blat.proc3829885.chain_1847	9	STRG.28767.3,STRG.28767.5	2
scaffold_16	retained_exon	8893071	8893116	+	asmbl_17246	none	STRG.19494.1,Trinity_GG_10664_c0_g1_i1,blat.proc3829881.chain_334	3	STRG.19494.2	1
scaffold_28	spliced_intron	3523207	3523344	-	asmbl_37480	none	STRG.29548.1	1	blat.proc3829901.chain_2648	1
scaffold_5	spliced_intron	15043048	15043268	-	asmbl_46018	none	STRG.6692.7,blat.proc3829889.chain_2738	2	STRG.6692.6,STRG.6692.8,STRG.6692.9,blat.proc3829889.chain_2740	4
scaffold_1	alt_acceptor	20346692	20346693	+	asmbl_2615	none	blat.proc3829871.chain_1450	1	STRG.1398.2,STRG.1398.3,STRG.1398.4,STRG.1398.6,Trinity_GG_815_c2_g1_i6,blat.proc3829871.chain_1446,blat.proc3829871.chain_1452,blat.proc3829871.chain_1453,blat.proc3829871.chain_1454	9
scaffold_20	ends_in_intron	11164432	11164432	-	asmbl_27068	none	Trinity_GG_30165_c0_g1_i3,blat.proc3829899.chain_610	2	STRG.23617.1	1
scaffold_10	starts_in_intron	16478333	16478333	+	asmbl_4988	none	blat.proc3829877.chain_1581	1	STRG.13106.1,blat.proc3829877.chain_1582	2
scaffold_13	retained_intron	4078795	4078887	+	asmbl_10740	none	STRG.15718.2,blat.proc3829879.chain_425	2	STRG.15718.1,STRG.15718.3,blat.proc3829879.chain_426	3
scaffold_5	ends_in_intron	15043418	15043418	-	asmbl_46025	none	blat.proc3829889.chain_2743	1	STRG.6692.2,STRG.6692.3,STRG.6692.4,STRG.6692.5,STRG.6692.6,STRG.6692.7,STRG.6692.8,STRG.6692.9,blat.proc3829889.chain_2738,blat.proc3829889.chain_2739,blat.proc3829889.chain_2740,blat.proc3829889.chain_2741,blat.proc3829889.chain_2742	13
scaffold_5	retained_intron	16519221	16519444	-	asmbl_46130	none	blat.proc3829889.chain_2879	1	STRG.6833.2,blat.proc3829889.chain_2876	2
scaffold_6	alt_acceptor	9138667	9138668	+	asmbl_47143,asmbl_47144,asmbl_47146,asmbl_47148,asmbl_47150,asmbl_47151,asmbl_47152,asmbl_47153,asmbl_47154,asmbl_47155,asmbl_47156	none	STRG.7784.1,STRG.7784.2,STRG.7784.3,STRG.7784.4,STRG.7784.5,blat.proc3829875.chain_195,blat.proc3829875.chain_197,blat.proc3829875.chain_200,blat.proc3829875.chain_201,blat.proc3829875.chain_202,blat.proc3829875.chain_203,blat.proc3829875.chain_204	12	blat.proc3829875.chain_196,blat.proc3829875.chain_198	2
scaffold_14	alt_donor	5451274	5451275	+	asmbl_11991	none	Trinity_GG_9352_c0_g1_i3,blat.proc3829879.chain_1727	2	STRG.17005.1,Trinity_GG_9352_c0_g1_i6,blat.proc3829879.chain_1723	3
scaffold_19	alt_donor	3682622	3682623	+	asmbl_22132,asmbl_22133,asmbl_22134,asmbl_22136	none	STRG.22046.1,STRG.22046.2,STRG.22046.3,STRG.22046.6	4	STRG.22046.4	1
scaffold_3	alt_acceptor	8255871	8255872	+	asmbl_40165,asmbl_40167	none	STRG.3399.1,Trinity_GG_1923_c0_g1_i1,Trinity_GG_1923_c0_g1_i2,blat.proc3829871.chain_3568,blat.proc3829871.chain_3569	5	STRG.3399.2	1
scaffold_10	alt_acceptor	6052476	6052477	+	asmbl_4500,asmbl_4508,asmbl_4511	none	STRG.12431.1,blat.proc3829877.chain_1066,blat.proc3829877.chain_1068,blat.proc3829877.chain_1071,blat.proc3829877.chain_1072,blat.proc3829877.chain_1073	6	STRG.12431.3,STRG.12431.4	2
scaffold_13	spliced_intron	3570908	3571205	+	asmbl_10694,asmbl_10695	none	STRG.15661.1,blat.proc3829879.chain_277,blat.proc3829879.chain_278	3	STRG.15661.2,Trinity_GG_8562_c0_g1_i4,blat.proc3829879.chain_279	3
scaffold_14	starts_in_intron	6291023	6291023	+	asmbl_12044	none	Trinity_GG_9404_c0_g1_i2,blat.proc3829879.chain_1815	2	STRG.17067.1,blat.proc3829879.chain_1814	2
scaffold_2	spliced_intron	15274237	15274329	+	asmbl_25035,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25044,asmbl_25045	none	STRG.2481.1,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	8	blat.proc3829871.chain_2524,blat.proc3829871.chain_2528,blat.proc3829871.chain_2533,blat.proc3829871.chain_2535,blat.proc3829871.chain_2536	5
scaffold_26	alternate_exon	5983324	5983402	+	asmbl_35592	none	STRG.28298.2	1	STRG.28298.1,Trinity_GG_15650_c0_g1_i4,blat.proc3829885.chain_1321,blat.proc3829885.chain_1325	4
scaffold_2	alternate_exon	889899	890963	+	asmbl_24153,asmbl_24154	none	blat.proc3829871.chain_1547,blat.proc3829871.chain_1550	2	STRG.1564.1,STRG.1564.2,STRG.1564.4,STRG.1564.5,blat.proc3829871.chain_1546	5
scaffold_10	alternate_exon	3928828	3928980	-	asmbl_3160	none	STRG.12230.5	1	STRG.12230.1,blat.proc3829893.chain_693,blat.proc3829893.chain_694	3
scaffold_8	ends_in_intron	9906590	9906590	-	asmbl_53063	none	Trinity_GG_22721_c0_g1_i3,blat.proc3829891.chain_2392	2	STRG.10235.1,blat.proc3829891.chain_2394,blat.proc3829891.chain_2395	3
scaffold_15	retained_intron	3363315	3363443	-	asmbl_15095	none	STRG.18095.1,Trinity_GG_27191_c0_g1_i3,blat.proc3829895.chain_2840	3	STRG.18095.2,blat.proc3829895.chain_2838	2
scaffold_14	retained_intron	1130983	1131079	-	asmbl_12843	none	Trinity_GG_26404_c0_g1_i1,blat.proc3829895.chain_1474	2	STRG.16759.1,STRG.16759.2,Trinity_GG_26404_c0_g1_i2,Trinity_GG_26404_c0_g1_i3,blat.proc3829895.chain_1475,blat.proc3829895.chain_1476	6
scaffold_5	retained_intron	15285942	15286100	-	asmbl_46039	none	STRG.6706.1,Trinity_GG_20782_c0_g1_i5,blat.proc3829889.chain_2770	3	STRG.6706.2,blat.proc3829889.chain_2769	2
scaffold_23	starts_in_intron	10977251	10977251	+	asmbl_31185,asmbl_31187,asmbl_31192	none	Trinity_GG_14524_c0_g1_i12,Trinity_GG_14524_c0_g1_i9,blat.proc3829883.chain_3192,blat.proc3829883.chain_3197,blat.proc3829883.chain_3201	5	STRG.26281.1,STRG.26281.2,Trinity_GG_14524_c0_g1_i13,Trinity_GG_14524_c0_g1_i8,blat.proc3829883.chain_3193,blat.proc3829883.chain_3194,blat.proc3829883.chain_3195,blat.proc3829883.chain_3199,blat.proc3829883.chain_3200,blat.proc3829883.chain_3203	10
scaffold_2	alternate_exon	17977489	17981831	+	asmbl_25247	none	STRG.2688.2,blat.proc3829871.chain_2904	2	STRG.2688.3,blat.proc3829871.chain_2905	2
scaffold_24	alt_acceptor	9956852	9956853	-	asmbl_33146,asmbl_33147,asmbl_33148,asmbl_33152,asmbl_33153,asmbl_33154	none	STRG.26947.1,STRG.26947.3,STRG.26947.4,blat.proc3829901.chain_245,blat.proc3829901.chain_248,blat.proc3829901.chain_249,blat.proc3829901.chain_250	7	STRG.26947.8	1
scaffold_16	alt_donor	3978194	3978195	-	asmbl_16197	none	STRG.19204.3	1	STRG.19204.1,STRG.19204.2,blat.proc3829897.chain_233,blat.proc3829897.chain_234	4
scaffold_2	alt_acceptor	15489616	15489617	+	asmbl_25076,asmbl_25077,asmbl_25079	none	STRG.2499.1,STRG.2499.2,STRG.2499.4,blat.proc3829871.chain_2698,blat.proc3829871.chain_2700	5	STRG.2499.3,blat.proc3829871.chain_2699	2
scaffold_25	retained_exon	637688	637796	-	asmbl_33987	none	STRG.27095.3	1	STRG.27095.2,blat.proc3829901.chain_338	2
scaffold_19	ends_in_intron	3671080	3671080	-	asmbl_21328	none	blat.proc3829897.chain_2741	1	STRG.22034.1,STRG.22034.3,Trinity_GG_29269_c0_g1_i2,Trinity_GG_29269_c0_g1_i6,blat.proc3829897.chain_2742,blat.proc3829897.chain_2743,blat.proc3829897.chain_2745	7
scaffold_16	retained_intron	2571074	2571165	+	asmbl_16920	none	STRG.19131.1	1	STRG.19131.2	1
scaffold_4	alt_donor	17709798	17709799	-	asmbl_42060	none	STRG.5370.2	1	STRG.5370.1,Trinity_GG_20020_c0_g2_i1,blat.proc3829889.chain_1439	3
scaffold_4	starts_in_intron	3299071	3299071	+	asmbl_42497	none	Trinity_GG_2369_c0_g2_i1,blat.proc3829873.chain_610	2	STRG.4256.1,blat.proc3829873.chain_607,blat.proc3829873.chain_609	3
scaffold_28	retained_intron	4838972	4839218	+	asmbl_38243,asmbl_38244	none	STRG.29622.1,STRG.29622.2,Trinity_GG_16390_c0_g1_i1,Trinity_GG_16390_c0_g1_i4,blat.proc3829885.chain_2671,blat.proc3829885.chain_2673,blat.proc3829885.chain_2674	7	STRG.29622.3,Trinity_GG_16390_c0_g1_i2,blat.proc3829885.chain_2672	3
scaffold_4	alt_acceptor	12531346	12531347	-	asmbl_41662	none	STRG.4887.2	1	STRG.4887.1,Trinity_GG_19696_c0_g1_i3,blat.proc3829889.chain_880,blat.proc3829889.chain_881	4
scaffold_32	alt_acceptor	37637	37638	+	asmbl_40900	none	blat.proc3829875.chain_987	1	STRG.29997.2	1
scaffold_27	alternate_exon	1605597	1606821	-	asmbl_36719	none	STRG.28630.1,Trinity_GG_33010_c2_g1_i1,Trinity_GG_33010_c3_g1_i1,Trinity_GG_33081_c0_g1_i1,blat.proc3829901.chain_1791	5	Trinity_GG_33010_c0_g1_i1,blat.proc3829901.chain_1789	2
scaffold_10	spliced_intron	8895156	8895317	-	asmbl_3532,asmbl_3533,asmbl_3534,asmbl_3535,asmbl_3537,asmbl_3538,asmbl_3539,asmbl_3540,asmbl_3542	none	STRG.12629.1,blat.proc3829893.chain_1128,blat.proc3829893.chain_1129,blat.proc3829893.chain_1130,blat.proc3829893.chain_1131,blat.proc3829893.chain_1132,blat.proc3829893.chain_1134,blat.proc3829893.chain_1135,blat.proc3829893.chain_1136	9	blat.proc3829893.chain_1127,blat.proc3829893.chain_1133	2
scaffold_15	retained_intron	16266207	16266369	-	asmbl_15835	none	Trinity_GG_27663_c0_g1_i2,blat.proc3829895.chain_3728	2	STRG.18970.1,blat.proc3829895.chain_3727	2
scaffold_19	spliced_intron	11457726	11458092	-	asmbl_21594,asmbl_21595,asmbl_21596,asmbl_21598	none	STRG.22464.1,Trinity_GG_29491_c0_g1_i7,blat.proc3829897.chain_3111,blat.proc3829897.chain_3114,blat.proc3829897.chain_3115,blat.proc3829897.chain_3116	6	blat.proc3829897.chain_3112	1
scaffold_8	retained_intron	16502745	16503358	-	asmbl_53410	none	Trinity_GG_22960_c0_g1_i24,blat.proc3829891.chain_2856	2	STRG.10621.5,Trinity_GG_22960_c0_g1_i9,blat.proc3829891.chain_2858,blat.proc3829891.chain_2859,blat.proc3829891.chain_2865	5
scaffold_4	ends_in_intron	12378201	12378201	-	asmbl_41652	none	Trinity_GG_19736_c1_g1_i2,blat.proc3829889.chain_950	2	STRG.4872.1,blat.proc3829889.chain_951	2
scaffold_2	retained_exon	30939	31692	+	asmbl_24076,asmbl_24077,asmbl_24079,asmbl_24081,asmbl_24082	none	STRG.1493.1,STRG.1493.3,Trinity_GG_850_c0_g1_i1,Trinity_GG_850_c0_g1_i6,blat.proc3829871.chain_1521,blat.proc3829871.chain_1524,blat.proc3829871.chain_1525,blat.proc3829871.chain_1527	8	Trinity_GG_850_c0_g1_i2,blat.proc3829871.chain_1526	2
scaffold_4	spliced_intron	18296094	18296125	+	asmbl_43442	none	STRG.5429.3	1	STRG.5429.1,STRG.5429.2,Trinity_GG_2984_c1_g1_i1,blat.proc3829873.chain_1652	4
scaffold_24	retained_exon	6784292	6784330	-	asmbl_32963,asmbl_32965	none	STRG.26713.1,STRG.26713.4	2	STRG.26713.2,STRG.26713.3	2
scaffold_27	retained_intron	6702554	6703059	-	asmbl_37033	none	STRG.29020.1,blat.proc3829901.chain_2189	2	STRG.29020.2	1
scaffold_5	ends_in_intron	1250447	1250447	-	asmbl_45239	none	Trinity_GG_20219_c0_g1_i2,blat.proc3829889.chain_1780	2	STRG.5683.1,blat.proc3829889.chain_1782,blat.proc3829889.chain_1783,blat.proc3829889.chain_1784	4
scaffold_27	retained_intron	5686546	5686785	+	asmbl_36314,asmbl_36315	none	STRG.28956.1,STRG.28956.3,Trinity_GG_15988_c0_g1_i9,blat.proc3829885.chain_1994,blat.proc3829885.chain_1995,blat.proc3829885.chain_1998	6	STRG.28956.2,blat.proc3829885.chain_1996,blat.proc3829885.chain_1997	3
scaffold_3	alternate_exon	6077192	6077494	-	asmbl_38853	none	blat.proc3829887.chain_3022	1	STRG.3254.1,blat.proc3829887.chain_3026	2
scaffold_6	spliced_intron	18077604	18078336	+	asmbl_47753	none	STRG.8483.2	1	STRG.8483.1,Trinity_GG_4675_c0_g1_i1,Trinity_GG_4675_c1_g1_i2,blat.proc3829875.chain_902,blat.proc3829875.chain_906	5
scaffold_4	alt_donor	17109598	17109599	+	asmbl_43372,asmbl_43373,asmbl_43374,asmbl_43375	none	STRG.5308.1,STRG.5308.2,STRG.5308.3,STRG.5308.4,blat.proc3829873.chain_1583,blat.proc3829873.chain_1587,blat.proc3829873.chain_1588	7	Trinity_GG_2943_c0_g1_i1	1
scaffold_6	alt_donor	9987182	9987183	-	asmbl_48578,asmbl_48579	none	STRG.7831.3,blat.proc3829891.chain_87	2	STRG.7831.1,blat.proc3829891.chain_86,blat.proc3829891.chain_88	3
scaffold_13	alt_donor	4378422	4378423	+	asmbl_10766,asmbl_10767	none	STRG.15749.1,STRG.15749.2	2	STRG.15749.3,blat.proc3829879.chain_404	2
scaffold_16	spliced_intron	14437676	14437729	+	asmbl_17478	none	STRG.19805.2	1	STRG.19805.1,Trinity_GG_10865_c2_g1_i1,blat.proc3829881.chain_682	3
scaffold_3	retained_intron	7708801	7708889	-	asmbl_38931,asmbl_38934	none	blat.proc3829887.chain_3173,blat.proc3829887.chain_3176	2	STRG.3361.1,STRG.3361.2,blat.proc3829887.chain_3171,blat.proc3829887.chain_3172,blat.proc3829887.chain_3174,blat.proc3829887.chain_3175,blat.proc3829887.chain_3177	7
scaffold_6	alt_acceptor	13273381	13273382	+	asmbl_47455	none	STRG.8085.2	1	STRG.8085.3,blat.proc3829875.chain_490,blat.proc3829875.chain_492	3
scaffold_27	alt_donor	3093431	3093432	-	asmbl_36841	none	STRG.28775.3,blat.proc3829901.chain_1951	2	STRG.28775.1,STRG.28775.4,blat.proc3829901.chain_1946,blat.proc3829901.chain_1947	4
scaffold_16	alt_acceptor	3979611	3979612	-	asmbl_16194,asmbl_16195	none	STRG.19204.2,blat.proc3829897.chain_233,blat.proc3829897.chain_234	3	STRG.19204.1,STRG.19204.3	2
scaffold_23	retained_intron	7701820	7701972	+	asmbl_31020	none	STRG.26068.1	1	STRG.26068.2	1
scaffold_4	alt_acceptor	12535358	12535359	-	asmbl_41664	none	STRG.4888.1	1	STRG.4888.2,blat.proc3829889.chain_930	2
scaffold_7	retained_intron	12412680	12412840	+	asmbl_51136,asmbl_51137	none	STRG.9333.1,Trinity_GG_5182_c0_g1_i2,blat.proc3829875.chain_1791	3	STRG.9333.2,Trinity_GG_5182_c0_g1_i1,blat.proc3829875.chain_1790	3
scaffold_10	alt_donor	7110355	7110356	+	asmbl_4542	none	STRG.12521.1,blat.proc3829877.chain_1094	2	STRG.12521.2,blat.proc3829877.chain_1092	2
scaffold_6	spliced_intron	15945018	15945059	+	asmbl_47620	none	STRG.8316.3	1	STRG.8316.1	1
scaffold_12	starts_in_intron	4618610	4618610	-	asmbl_7559	none	blat.proc3829893.chain_3031	1	STRG.14627.1,blat.proc3829893.chain_3030	2
scaffold_20	alt_donor	6950041	6950042	-	asmbl_26771,asmbl_26773,asmbl_26776,asmbl_26777,asmbl_26779	none	STRG.23254.3,STRG.23254.5,STRG.23254.6,STRG.23254.7,blat.proc3829899.chain_235,blat.proc3829899.chain_238,blat.proc3829899.chain_239	7	STRG.23254.2,blat.proc3829899.chain_237	2
scaffold_5	skipped_exon	3772202	3774132	+	asmbl_43903	none	STRG.5834.1	1	STRG.5834.2,STRG.5834.3,blat.proc3829873.chain_2012,blat.proc3829873.chain_2013	4
scaffold_19	alt_acceptor	11168934	11168935	+	asmbl_22474	none	STRG.22441.1,blat.proc3829881.chain_3333	2	blat.proc3829881.chain_3334	1
scaffold_3	alt_acceptor	14835431	14835432	+	asmbl_40518,asmbl_40519	none	STRG.3834.1,Trinity_GG_2121_c0_g1_i1,Trinity_GG_2121_c0_g1_i3,blat.proc3829873.chain_184,blat.proc3829873.chain_185	5	Trinity_GG_2121_c0_g1_i4	1
scaffold_24	ends_in_intron	446908	446908	+	asmbl_32028	none	Trinity_GG_14559_c0_g1_i1	1	STRG.26319.1,Trinity_GG_14559_c0_g1_i8,blat.proc3829883.chain_3262,blat.proc3829883.chain_3263	4
scaffold_15	starts_in_intron	4566185	4566185	+	asmbl_14103,asmbl_14104	none	Trinity_GG_9942_c0_g1_i3,Trinity_GG_9942_c0_g1_i5,blat.proc3829879.chain_2743,blat.proc3829879.chain_2744	4	STRG.18173.1,STRG.18173.2,STRG.18173.3,Trinity_GG_9942_c0_g1_i1,Trinity_GG_9942_c0_g1_i2,Trinity_GG_9942_c0_g1_i4,blat.proc3829879.chain_2741,blat.proc3829879.chain_2742,blat.proc3829879.chain_2745	9
scaffold_1	alt_donor	14355967	14355968	-	asmbl_905,asmbl_906	none	blat.proc3829887.chain_906,blat.proc3829887.chain_907	2	blat.proc3829887.chain_909	1
scaffold_13	starts_in_intron	8697897	8697897	+	asmbl_11127	none	blat.proc3829879.chain_807	1	STRG.16125.1,STRG.16125.2,blat.proc3829879.chain_808,blat.proc3829879.chain_809	4
scaffold_12	alt_acceptor	12451996	12451997	+	asmbl_8969	none	STRG.15137.2	1	STRG.15137.1,STRG.15137.4	2
scaffold_2	retained_intron	16085317	16085688	-	asmbl_23685,asmbl_23686	none	blat.proc3829887.chain_2398,blat.proc3829887.chain_2399	2	STRG.2559.1,blat.proc3829887.chain_2401	2
scaffold_21	skipped_exon	10250005	10251788	-	asmbl_28040	none	Trinity_GG_30668_c0_g1_i1,blat.proc3829899.chain_1577	2	STRG.24471.1,Trinity_GG_30668_c0_g1_i2,blat.proc3829899.chain_1576	3
scaffold_21	alternate_exon	5792251	5792388	-	asmbl_27726	none	STRG.24095.1,blat.proc3829899.chain_1190	2	STRG.24095.2,blat.proc3829899.chain_1189	2
scaffold_19	alt_donor	12207921	12207922	+	asmbl_22570,asmbl_22571	none	STRG.22538.3,Trinity_GG_12469_c0_g1_i5,blat.proc3829881.chain_3484	3	STRG.22538.1,Trinity_GG_12469_c0_g1_i1,blat.proc3829881.chain_3486	3
scaffold_1	spliced_intron	18485288	18485976	-	asmbl_1111	none	blat.proc3829887.chain_1212	1	STRG.1300.1,STRG.1300.3	2
scaffold_7	skipped_exon	15247104	15247936	+	asmbl_51303,asmbl_51304	none	STRG.9529.1,blat.proc3829875.chain_2039,blat.proc3829875.chain_2040	3	STRG.9529.3,blat.proc3829875.chain_2038,blat.proc3829875.chain_2041	3
scaffold_20	ends_in_intron	7183054	7183054	+	asmbl_25854,asmbl_25857	none	blat.proc3829883.chain_344,blat.proc3829883.chain_345	2	STRG.23273.1	1
scaffold_9	retained_exon	3665717	3665928	+	asmbl_53888	none	blat.proc3829875.chain_3441	1	STRG.10962.1,Trinity_GG_6100_c0_g1_i3,blat.proc3829875.chain_3440	3
scaffold_3	ends_in_intron	8161629	8161629	-	asmbl_38962	none	Trinity_GG_18833_c2_g2_i2,blat.proc3829887.chain_3139	2	blat.proc3829887.chain_3140	1
scaffold_4	alternate_exon	1980877	1981577	+	asmbl_42480	none	STRG.4223.2	1	STRG.4223.3,Trinity_GG_2353_c1_g1_i1,blat.proc3829873.chain_580	3
scaffold_1	spliced_intron	7370155	7370238	-	asmbl_442	none	STRG.517.4	1	STRG.517.1,STRG.517.2,STRG.517.3,STRG.517.5,Trinity_GG_17298_c0_g1_i1,blat.proc3829887.chain_413	6
scaffold_19	starts_in_intron	2654174	2654174	-	asmbl_21262	none	blat.proc3829897.chain_2704	1	STRG.21941.1,blat.proc3829897.chain_2702	2
scaffold_14	alternate_exon	13221383	13221495	+	asmbl_12453	none	STRG.17600.5	1	STRG.17600.1,STRG.17600.2,STRG.17600.3,STRG.17600.4,blat.proc3829879.chain_2203,blat.proc3829879.chain_2204,blat.proc3829879.chain_2205	7
scaffold_10	starts_in_intron	5539602	5539602	-	asmbl_3288	none	blat.proc3829893.chain_819	1	STRG.12364.1	1
scaffold_8	spliced_intron	9467271	9467486	-	asmbl_53030,asmbl_53031,asmbl_53032,asmbl_53035	none	STRG.10197.1,Trinity_GG_22724_c0_g1_i12,blat.proc3829891.chain_2400,blat.proc3829891.chain_2401,blat.proc3829891.chain_2406,blat.proc3829891.chain_2407	6	blat.proc3829891.chain_2403,blat.proc3829891.chain_2405,blat.proc3829891.chain_2408	3
scaffold_8	spliced_intron	18084290	18084429	-	asmbl_53511,asmbl_53513,asmbl_53514	none	STRG.10701.1,Trinity_GG_22907_c0_g1_i1,Trinity_GG_22907_c0_g1_i2,Trinity_GG_22907_c0_g1_i6,blat.proc3829891.chain_2754,blat.proc3829891.chain_2755,blat.proc3829891.chain_2756	7	STRG.10701.2,STRG.10701.3,Trinity_GG_22907_c0_g1_i4,blat.proc3829891.chain_2753	4
scaffold_2	alt_donor	14232093	14232094	-	asmbl_23604	none	STRG.2418.1	1	blat.proc3829887.chain_2303	1
scaffold_5	retained_exon	16646474	16646497	+	asmbl_44776	none	STRG.6846.2,blat.proc3829873.chain_2906	2	STRG.6846.1,blat.proc3829873.chain_2908	2
scaffold_1	alt_acceptor	3618424	3618425	+	asmbl_1611,asmbl_1612	none	STRG.224.1,blat.proc3829871.chain_279,blat.proc3829871.chain_282	3	blat.proc3829871.chain_280	1
scaffold_10	alternate_exon	9061441	9061569	-	asmbl_3577	none	blat.proc3829893.chain_1162	1	STRG.12643.1,blat.proc3829893.chain_1168	2
scaffold_10	retained_exon	16257932	16258017	+	asmbl_4981,asmbl_4982	none	STRG.13097.2,Trinity_GG_7185_c0_g1_i2,blat.proc3829877.chain_1597,blat.proc3829877.chain_1598	4	STRG.13097.1,STRG.13097.3	2
scaffold_12	skipped_exon	9687346	9690020	-	asmbl_7817,asmbl_7818	none	STRG.14929.2,STRG.14929.4,Trinity_GG_25344_c0_g1_i1,Trinity_GG_25344_c0_g1_i5,blat.proc3829893.chain_3334,blat.proc3829893.chain_3335	6	STRG.14929.1,STRG.14929.3,blat.proc3829893.chain_3332	3
scaffold_7	alt_acceptor	712163	712164	-	asmbl_49507	none	blat.proc3829891.chain_978	1	STRG.8600.1,blat.proc3829891.chain_979,blat.proc3829891.chain_980	3
scaffold_1	alternate_exon	14607313	14607330	+	asmbl_2380	none	STRG.1057.1	1	STRG.1057.2	1
scaffold_3	spliced_intron	17361952	17362032	-	asmbl_39494,asmbl_39495,asmbl_39496,asmbl_39497,asmbl_39498,asmbl_39499,asmbl_39500,asmbl_39502,asmbl_39503,asmbl_39504	none	STRG.3972.1,STRG.3972.3,STRG.3972.4,blat.proc3829889.chain_22,blat.proc3829889.chain_23,blat.proc3829889.chain_24,blat.proc3829889.chain_25,blat.proc3829889.chain_27,blat.proc3829889.chain_28,blat.proc3829889.chain_29	10	STRG.3972.2,Trinity_GG_19202_c0_g1_i17,blat.proc3829889.chain_26,blat.proc3829889.chain_31	4
scaffold_1	alt_donor	5728837	5728838	+	asmbl_1756	none	STRG.378.1,blat.proc3829871.chain_427	2	STRG.378.2,blat.proc3829871.chain_428	2
scaffold_7	spliced_intron	9311355	9311554	+	asmbl_50958,asmbl_50959	none	STRG.9133.1,Trinity_GG_5081_c0_g1_i1,Trinity_GG_5081_c0_g1_i2,blat.proc3829875.chain_1611,blat.proc3829875.chain_1612	5	blat.proc3829875.chain_1610	1
scaffold_12	retained_intron	4721064	4721689	-	asmbl_7566,asmbl_7567,asmbl_7568	none	STRG.14636.2,blat.proc3829893.chain_3003,blat.proc3829893.chain_3004	3	STRG.14636.1	1
scaffold_27	alt_acceptor	6782467	6782468	-	asmbl_37036	none	STRG.29027.3,blat.proc3829901.chain_2193	2	STRG.29027.1,STRG.29027.2,blat.proc3829901.chain_2190,blat.proc3829901.chain_2191	4
scaffold_3	alt_acceptor	1767434	1767435	+	asmbl_39834	none	STRG.2990.1	1	STRG.2990.3	1
scaffold_3	alt_acceptor	14422612	14422613	+	asmbl_40481,asmbl_40482,asmbl_40483,asmbl_40485	none	STRG.3785.1,STRG.3785.2,STRG.3785.3,Trinity_GG_2146_c0_g1_i2,Trinity_GG_2146_c0_g1_i3,Trinity_GG_2146_c0_g1_i5,Trinity_GG_2146_c0_g2_i1,blat.proc3829873.chain_229,blat.proc3829873.chain_230,blat.proc3829873.chain_231,blat.proc3829873.chain_232	11	Trinity_GG_2146_c0_g1_i1,blat.proc3829873.chain_228	2
scaffold_1	spliced_intron	175417	175492	-	asmbl_11,asmbl_13,asmbl_14,asmbl_15	none	STRG.15.1,STRG.15.2,Trinity_GG_17028_c0_g1_i4,Trinity_GG_17028_c0_g1_i5,blat.proc3829885.chain_3683,blat.proc3829885.chain_3685,blat.proc3829885.chain_3687,blat.proc3829885.chain_3688	8	Trinity_GG_17028_c0_g1_i1,blat.proc3829885.chain_3686	2
scaffold_18	alt_acceptor	7943320	7943321	-	asmbl_20025	none	STRG.21483.2	1	STRG.21483.3,blat.proc3829897.chain_2326	2
scaffold_9	spliced_intron	9648651	9648733	+	asmbl_54203	none	STRG.11328.1,blat.proc3829877.chain_89	2	STRG.11328.2	1
scaffold_6	starts_in_intron	854561	854561	-	asmbl_48021	none	Trinity_GG_21014_c0_g2_i1	1	STRG.7143.1,STRG.7143.3,blat.proc3829889.chain_3139,blat.proc3829889.chain_3140	4
scaffold_28	alt_donor	5228265	5228266	-	asmbl_37581,asmbl_37584	none	STRG.29650.1,blat.proc3829901.chain_2671,blat.proc3829901.chain_2673	3	STRG.29650.2,blat.proc3829901.chain_2672	2
scaffold_15	retained_intron	1598964	1599034	+	asmbl_13965	none	blat.proc3829879.chain_2651	1	STRG.17953.1,blat.proc3829879.chain_2650	2
scaffold_11	starts_in_intron	16255738	16255738	+	asmbl_6125	none	Trinity_GG_7848_c0_g1_i3,blat.proc3829877.chain_2719	2	STRG.14318.2	1
scaffold_4	ends_in_intron	4095048	4095048	+	asmbl_42554,asmbl_42555	none	STRG.4313.5,blat.proc3829873.chain_638	2	STRG.4313.1,STRG.4313.2,STRG.4313.3,STRG.4313.4,blat.proc3829873.chain_631,blat.proc3829873.chain_635,blat.proc3829873.chain_636	7
scaffold_18	alternate_exon	1391031	1391555	-	asmbl_19655,asmbl_19656	none	blat.proc3829897.chain_1933,blat.proc3829897.chain_1935	2	STRG.21014.3,Trinity_GG_28799_c0_g1_i5,blat.proc3829897.chain_1931	3
scaffold_9	retained_intron	6400017	6400100	+	asmbl_54079,asmbl_54082	none	STRG.11163.2,STRG.11163.3,Trinity_GG_6211_c0_g1_i4,blat.proc3829875.chain_3634	4	STRG.11163.1,Trinity_GG_6211_c0_g1_i2,blat.proc3829875.chain_3632	3
scaffold_12	skipped_exon	10003814	10004420	-	asmbl_7843	none	STRG.14963.1	1	STRG.14963.2,STRG.14963.3,blat.proc3829893.chain_3284	3
scaffold_27	retained_intron	2436344	2436418	+	asmbl_36046	none	blat.proc3829885.chain_1760	1	STRG.28696.2	1
scaffold_4	alternate_exon	12936219	12936326	-	asmbl_41703	none	STRG.4938.1,blat.proc3829889.chain_981	2	STRG.4938.2,blat.proc3829889.chain_980	2
scaffold_17	starts_in_intron	11659821	11659821	-	asmbl_19348	none	blat.proc3829897.chain_1666	1	STRG.20709.1,blat.proc3829897.chain_1665	2
scaffold_14	alternate_exon	6908274	6908313	+	asmbl_12094	none	blat.proc3829879.chain_1879	1	STRG.17115.1,STRG.17115.2,blat.proc3829879.chain_1881,blat.proc3829879.chain_1882,blat.proc3829879.chain_1883	5
scaffold_5	alt_acceptor	11639306	11639307	+	asmbl_44424	none	STRG.6414.3,Trinity_GG_3493_c0_g1_i2,blat.proc3829873.chain_2555	3	STRG.6414.2,Trinity_GG_3493_c0_g1_i1,blat.proc3829873.chain_2554	3
scaffold_17	retained_intron	9005779	9006436	+	asmbl_18182	none	blat.proc3829881.chain_1318,blat.proc3829881.chain_1320	2	STRG.20513.1,STRG.20513.2,STRG.20513.3,blat.proc3829881.chain_1319,blat.proc3829881.chain_1321	5
scaffold_7	alt_donor	1440153	1440154	-	asmbl_49541	none	blat.proc3829891.chain_1002	1	STRG.8631.2	1
scaffold_6	starts_in_intron	5434459	5434459	+	asmbl_46890	none	Trinity_GG_4108_c0_g1_i3,blat.proc3829873.chain_3623	2	STRG.7507.1,STRG.7507.2,STRG.7507.3,Trinity_GG_4108_c0_g1_i2,Trinity_GG_4108_c0_g1_i5,blat.proc3829873.chain_3620,blat.proc3829873.chain_3621,blat.proc3829873.chain_3622,blat.proc3829873.chain_3624	9
scaffold_1	retained_exon	14964720	14964791	+	asmbl_2396	none	STRG.1069.2	1	STRG.1069.1,blat.proc3829871.chain_1099	2
scaffold_23	alt_donor	6630187	6630188	+	asmbl_30933	none	blat.proc3829883.chain_2816	1	STRG.25985.1,STRG.25985.2,blat.proc3829883.chain_2813,blat.proc3829883.chain_2814,blat.proc3829883.chain_2815,blat.proc3829883.chain_2817	6
scaffold_2	alt_donor	3771210	3771211	+	asmbl_24334	none	blat.proc3829871.chain_1873	1	STRG.1809.1	1
scaffold_12	alt_donor	16338959	16338960	+	asmbl_9125	none	STRG.15376.1,blat.proc3829877.chain_3729	2	STRG.15376.2,blat.proc3829877.chain_3728	2
scaffold_6	alt_acceptor	14900519	14900520	+	asmbl_47583	none	STRG.8258.1,Trinity_GG_4552_c0_g1_i2,blat.proc3829875.chain_675	3	STRG.8258.2,Trinity_GG_4552_c0_g1_i1,blat.proc3829875.chain_676	3
scaffold_2	retained_exon	6900682	6900759	+	asmbl_24537,asmbl_24539,asmbl_24541,asmbl_24544,asmbl_24546,asmbl_24547	none	STRG.2036.1,STRG.2036.3,STRG.2036.5,blat.proc3829871.chain_2016,blat.proc3829871.chain_2018,blat.proc3829871.chain_2019	6	STRG.2036.2,STRG.2036.6,Trinity_GG_1103_c0_g1_i2,blat.proc3829871.chain_2015,blat.proc3829871.chain_2020,blat.proc3829871.chain_2022	6
scaffold_3	alt_acceptor	18141547	18141548	-	asmbl_39538,asmbl_39539	none	STRG.4027.3,blat.proc3829889.chain_98,blat.proc3829889.chain_99	3	STRG.4027.1,STRG.4027.2	2
scaffold_28	spliced_intron	232029	232185	+	asmbl_37949,asmbl_37951,asmbl_37952,asmbl_37953	none	STRG.29233.1,STRG.29233.2,STRG.29233.3,blat.proc3829885.chain_2391	4	blat.proc3829885.chain_2388	1
scaffold_23	retained_intron	1741287	1741399	+	asmbl_30658	none	blat.proc3829883.chain_2548	1	blat.proc3829883.chain_2547,blat.proc3829883.chain_2549	2
scaffold_2	spliced_intron	15270016	15270269	+	asmbl_25035,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25043,asmbl_25044,asmbl_25045	none	STRG.2481.1,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2536,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	9	blat.proc3829871.chain_2529	1
scaffold_3	ends_in_intron	15741069	15741069	-	asmbl_39390	none	blat.proc3829887.chain_3579	1	STRG.3850.1,blat.proc3829887.chain_3578,blat.proc3829887.chain_3580,blat.proc3829887.chain_3581	4
scaffold_2	skipped_exon	7781621	7782467	+	asmbl_24606,asmbl_24607,asmbl_24612	none	STRG.2076.5,STRG.2076.6,blat.proc3829871.chain_2207	3	STRG.2076.1,STRG.2076.2,STRG.2076.4,blat.proc3829871.chain_2203,blat.proc3829871.chain_2205,blat.proc3829871.chain_2208,blat.proc3829871.chain_2211,blat.proc3829871.chain_2213	8
scaffold_20	spliced_intron	11670739	11670885	+	asmbl_26238	none	Trinity_GG_13100_c0_g1_i2,blat.proc3829883.chain_802	2	Trinity_GG_13100_c0_g1_i1,Trinity_GG_13100_c0_g1_i5,blat.proc3829883.chain_800,blat.proc3829883.chain_801	4
scaffold_19	alt_donor	752098	752099	-	asmbl_21209	none	Trinity_GG_29196_c0_g1_i1,blat.proc3829897.chain_2611	2	STRG.21848.1,blat.proc3829897.chain_2612	2
scaffold_18	ends_in_intron	7794442	7794442	-	asmbl_20016	none	Trinity_GG_29019_c0_g1_i3,blat.proc3829897.chain_2303	2	STRG.21474.1,STRG.21474.2,Trinity_GG_29019_c0_g1_i1,Trinity_GG_29019_c0_g1_i2,blat.proc3829897.chain_2304,blat.proc3829897.chain_2305	6
scaffold_19	retained_intron	4808048	4808289	-	asmbl_21341	none	blat.proc3829897.chain_2799	1	STRG.22049.1,blat.proc3829897.chain_2800	2
scaffold_2	alt_acceptor	4900238	4900239	-	asmbl_23139	none	STRG.1910.2	1	STRG.1910.1,blat.proc3829887.chain_1782	2
scaffold_17	alternate_exon	6181793	6182190	-	asmbl_19011	none	STRG.20283.1	1	STRG.20283.2	1
scaffold_12	ends_in_intron	7538178	7538178	-	asmbl_7725	none	Trinity_GG_25289_c1_g1_i1,blat.proc3829893.chain_3243	2	STRG.14821.1,STRG.14821.2,blat.proc3829893.chain_3241,blat.proc3829893.chain_3242	4
scaffold_14	retained_exon	8307760	8307872	+	asmbl_12198	none	STRG.17241.1,blat.proc3829879.chain_1921	2	STRG.17241.2	1
scaffold_8	retained_intron	8901327	8902097	-	asmbl_52973	none	STRG.10137.2,blat.proc3829891.chain_2318	2	STRG.10137.3	1
scaffold_1	alt_acceptor	5748836	5748837	+	asmbl_1777	none	STRG.373.3,blat.proc3829871.chain_437	2	STRG.373.1,STRG.373.2,blat.proc3829871.chain_435	3
scaffold_15	skipped_exon	3898968	3900665	+	asmbl_14054	none	STRG.18130.1	1	STRG.18130.2,Trinity_GG_9950_c0_g1_i1,blat.proc3829879.chain_2769	3
scaffold_10	starts_in_intron	8907382	8907382	+	asmbl_4615	none	Trinity_GG_6958_c1_g1_i1,blat.proc3829877.chain_1189	2	STRG.12627.1,blat.proc3829877.chain_1187,blat.proc3829877.chain_1188	3
scaffold_5	retained_exon	15703769	15703895	+	asmbl_44673	none	STRG.6756.2	1	STRG.6756.1,blat.proc3829873.chain_2831,blat.proc3829873.chain_2832	3
scaffold_6	skipped_exon	17885654	17886621	+	asmbl_47738	none	Trinity_GG_4642_c0_g1_i3,blat.proc3829875.chain_829	2	STRG.8475.3,Trinity_GG_4642_c0_g1_i1,Trinity_GG_4642_c0_g1_i2,blat.proc3829875.chain_827,blat.proc3829875.chain_832	5
scaffold_15	retained_intron	6080293	6080419	-	asmbl_15254	none	blat.proc3829895.chain_3028	1	STRG.18259.1,blat.proc3829895.chain_3029	2
scaffold_56	retained_intron	4308	4486	-	asmbl_46521	none	STRG.30050.1,blat.proc3829901.chain_3158	2	STRG.30050.2	1
scaffold_20	retained_intron	10249203	10249538	-	asmbl_27022	none	blat.proc3829899.chain_557	1	STRG.23558.2,blat.proc3829899.chain_556	2
scaffold_21	alt_acceptor	4654508	4654509	-	asmbl_27605	none	STRG.23998.1,blat.proc3829899.chain_1063	2	STRG.23998.2	1
scaffold_2	ends_in_intron	1595665	1595665	+	asmbl_24232	none	Trinity_GG_905_c0_g1_i6,blat.proc3829871.chain_1665	2	STRG.1628.1,STRG.1628.2,STRG.1628.3,blat.proc3829871.chain_1668	4
scaffold_10	retained_intron	17325750	17326440	-	asmbl_3954	none	STRG.13169.3,blat.proc3829893.chain_1572	2	STRG.13169.1,blat.proc3829893.chain_1573	2
scaffold_18	retained_intron	5563424	5563617	-	asmbl_19891,asmbl_19893	none	STRG.21297.2,Trinity_GG_28951_c1_g1_i8,blat.proc3829897.chain_2184	3	STRG.21297.1,Trinity_GG_28951_c1_g1_i5,Trinity_GG_28951_c1_g1_i6,blat.proc3829897.chain_2181,blat.proc3829897.chain_2185	5
scaffold_10	spliced_intron	4058608	4058757	-	asmbl_3166,asmbl_3167	none	STRG.12237.1,STRG.12237.4,blat.proc3829893.chain_706,blat.proc3829893.chain_709	4	STRG.12237.6,STRG.12237.7,blat.proc3829893.chain_707	3
scaffold_18	alt_acceptor	8727001	8727002	+	asmbl_20886	none	STRG.21533.4	1	blat.proc3829881.chain_2484	1
scaffold_15	alt_donor	13055885	13055886	-	asmbl_15626	none	STRG.18738.2,blat.proc3829895.chain_3469	2	STRG.18738.1,blat.proc3829895.chain_3467	2
scaffold_5	alt_donor	14696562	14696563	+	asmbl_44625	none	STRG.6664.1,blat.proc3829873.chain_2782	2	STRG.6664.2	1
scaffold_2	skipped_exon	19025086	19025969	-	asmbl_23862	none	blat.proc3829887.chain_2613	1	blat.proc3829887.chain_2612	1
scaffold_14	spliced_intron	15565811	15565918	+	asmbl_12608	none	STRG.17784.3	1	STRG.17784.1	1
scaffold_22	alt_donor	10320486	10320487	+	asmbl_29645	none	STRG.25367.3	1	STRG.25367.1,STRG.25367.2	2
scaffold_7	starts_in_intron	7025290	7025290	+	asmbl_50776	none	Trinity_GG_4928_c0_g1_i1,blat.proc3829875.chain_1361	2	STRG.8948.1,Trinity_GG_4928_c0_g1_i2,blat.proc3829875.chain_1362	3
scaffold_20	ends_in_intron	10177289	10177289	-	asmbl_27017	none	Trinity_GG_30140_c0_g2_i1,blat.proc3829899.chain_562	2	STRG.23554.1,STRG.23554.2,blat.proc3829899.chain_560,blat.proc3829899.chain_561	4
scaffold_6	spliced_intron	3057498	3057599	+	asmbl_46743,asmbl_46746,asmbl_46748,asmbl_46750,asmbl_46751,asmbl_46752,asmbl_46753	none	STRG.7308.1,STRG.7308.2,blat.proc3829873.chain_3440,blat.proc3829873.chain_3441,blat.proc3829873.chain_3442,blat.proc3829873.chain_3444,blat.proc3829873.chain_3445,blat.proc3829873.chain_3446	8	blat.proc3829873.chain_3438	1
scaffold_27	alternate_exon	5656886	5663797	+	asmbl_36307,asmbl_36309	none	STRG.28952.1,STRG.28952.2,blat.proc3829885.chain_2030,blat.proc3829885.chain_2031,blat.proc3829885.chain_2032	5	STRG.28952.3,Trinity_GG_16010_c0_g1_i1,blat.proc3829885.chain_2033	3
scaffold_16	skipped_exon	7277120	7278374	+	asmbl_17129	none	blat.proc3829881.chain_277	1	STRG.19380.1,blat.proc3829881.chain_276	2
scaffold_11	alt_acceptor	13099436	13099437	+	asmbl_6002,asmbl_6003,asmbl_6004,asmbl_6005,asmbl_6006,asmbl_6007,asmbl_6008	none	STRG.14176.2,STRG.14176.3,STRG.14176.4,blat.proc3829877.chain_2673,blat.proc3829877.chain_2674,blat.proc3829877.chain_2675,blat.proc3829877.chain_2677,blat.proc3829877.chain_2678	8	STRG.14176.1,Trinity_GG_7823_c0_g1_i6,blat.proc3829877.chain_2666,blat.proc3829877.chain_2669,blat.proc3829877.chain_2670,blat.proc3829877.chain_2671,blat.proc3829877.chain_2672,blat.proc3829877.chain_2676	8
scaffold_23	alternate_exon	4226786	4229523	-	asmbl_31569	none	STRG.25818.1,blat.proc3829899.chain_2949	2	blat.proc3829899.chain_2946	1
scaffold_10	alt_acceptor	10098146	10098147	-	asmbl_3612	none	STRG.12704.1,Trinity_GG_24121_c0_g1_i1,blat.proc3829893.chain_1217	3	Trinity_GG_24121_c0_g1_i2,blat.proc3829893.chain_1216	2
scaffold_23	retained_exon	4101046	4101228	-	asmbl_31549,asmbl_31554	none	STRG.25802.1,STRG.25802.4,STRG.25802.5	3	STRG.25802.2,blat.proc3829899.chain_2934	2
scaffold_4	alt_donor	17568234	17568235	-	asmbl_42034,asmbl_42039	none	STRG.5346.3,STRG.5346.4	2	STRG.5346.1,STRG.5346.2	2
scaffold_21	alt_acceptor	10965526	10965527	+	asmbl_28908	none	STRG.24559.1,Trinity_GG_13542_c0_g1_i4,Trinity_GG_13542_c0_g1_i6,blat.proc3829883.chain_1566,blat.proc3829883.chain_1567,blat.proc3829883.chain_1568	6	STRG.24559.3	1
scaffold_7	alt_acceptor	712066	712067	-	asmbl_49505,asmbl_49508	none	STRG.8600.1,blat.proc3829891.chain_979,blat.proc3829891.chain_980	3	blat.proc3829891.chain_978	1
scaffold_1	starts_in_intron	14358498	14358498	+	asmbl_2367	none	Trinity_GG_620_c0_g1_i4,blat.proc3829871.chain_1123	2	STRG.1032.1,STRG.1032.2,blat.proc3829871.chain_1120,blat.proc3829871.chain_1121,blat.proc3829871.chain_1122	5
scaffold_12	retained_exon	12451939	12451978	+	asmbl_8972	none	STRG.15137.4	1	STRG.15137.2	1
scaffold_11	retained_intron	8085021	8085159	-	asmbl_6819	none	Trinity_GG_24745_c0_g1_i1,blat.proc3829893.chain_2270	2	STRG.13804.1,Trinity_GG_24745_c0_g1_i2,blat.proc3829893.chain_2269	3
scaffold_5	alt_donor	768219	768220	+	asmbl_43762	none	STRG.5618.1	1	STRG.5618.2	1
scaffold_28	alt_donor	2117260	2117261	+	asmbl_38019	none	STRG.29348.1,blat.proc3829885.chain_2475	2	STRG.29348.2	1
scaffold_17	alternate_exon	6978369	6978653	-	asmbl_19053,asmbl_19054	none	STRG.20347.1,blat.proc3829897.chain_1268,blat.proc3829897.chain_1270	3	STRG.20347.2,blat.proc3829897.chain_1269	2
scaffold_15	spliced_intron	12748286	12748489	+	asmbl_14540,asmbl_14541,asmbl_14544,asmbl_14545,asmbl_14546	none	STRG.18731.1,STRG.18731.2,STRG.18731.3,STRG.18731.4,blat.proc3829879.chain_3350,blat.proc3829879.chain_3351,blat.proc3829879.chain_3353	7	blat.proc3829879.chain_3352	1
scaffold_13	starts_in_intron	5337437	5337437	+	asmbl_10819	none	Trinity_GG_8701_c0_g1_i2,blat.proc3829879.chain_513	2	STRG.15817.1,STRG.15817.2,blat.proc3829879.chain_511,blat.proc3829879.chain_512,blat.proc3829879.chain_514	5
scaffold_1	spliced_intron	922856	922976	+	asmbl_1440	none	STRG.48.3,blat.proc3829871.chain_15	2	Trinity_GG_8_c0_g1_i2,blat.proc3829871.chain_16	2
scaffold_114	skipped_exon	12177	13245	+	asmbl_7380	none	STRG.30124.1	1	STRG.30124.2	1
scaffold_10	alternate_exon	948495	949197	+	asmbl_4172,asmbl_4173,asmbl_4174	none	STRG.11969.1,STRG.11969.2,Trinity_GG_6645_c0_g1_i1,Trinity_GG_6645_c0_g1_i3,Trinity_GG_6645_c0_g1_i4,blat.proc3829877.chain_649,blat.proc3829877.chain_651,blat.proc3829877.chain_653	8	Trinity_GG_6645_c0_g1_i6,blat.proc3829877.chain_650	2
scaffold_15	alt_donor	5457694	5457695	-	asmbl_15218	none	STRG.18219.2,Trinity_GG_27252_c0_g1_i10,blat.proc3829895.chain_2954	3	STRG.18219.1,blat.proc3829895.chain_2953,blat.proc3829895.chain_2955,blat.proc3829895.chain_2956	4
scaffold_19	alternate_exon	1066366	1066716	-	asmbl_21221	none	STRG.21881.2,blat.proc3829897.chain_2636	2	STRG.21881.1	1
scaffold_11	skipped_exon	6251734	6253377	+	asmbl_5587	none	STRG.13670.1,blat.proc3829877.chain_2180	2	STRG.13670.2,Trinity_GG_7547_c0_g1_i2,Trinity_GG_7547_c0_g1_i9,blat.proc3829877.chain_2179,blat.proc3829877.chain_2183	5
scaffold_27	spliced_intron	7277803	7277891	+	asmbl_36402	none	STRG.29070.2	1	STRG.29070.1,Trinity_GG_16046_c0_g1_i1,blat.proc3829885.chain_2123	3
scaffold_8	alternate_exon	11919231	11919300	-	asmbl_53172	none	STRG.10381.2	1	STRG.10381.1	1
scaffold_14	spliced_intron	3159934	3160025	+	asmbl_11879,asmbl_11880,asmbl_11881,asmbl_11882,asmbl_11883,asmbl_11885,asmbl_11886,asmbl_11889,asmbl_11890,asmbl_11892,asmbl_11894,asmbl_11897,asmbl_11898	none	STRG.16893.1,STRG.16893.2,STRG.16893.3,Trinity_GG_9302_c0_g1_i11,blat.proc3829879.chain_1625,blat.proc3829879.chain_1626,blat.proc3829879.chain_1627,blat.proc3829879.chain_1629,blat.proc3829879.chain_1630,blat.proc3829879.chain_1631,blat.proc3829879.chain_1633,blat.proc3829879.chain_1636,blat.proc3829879.chain_1638,blat.proc3829879.chain_1639,blat.proc3829879.chain_1640	15	blat.proc3829879.chain_1632,blat.proc3829879.chain_1635	2
scaffold_4	alt_donor	19448557	19448558	+	asmbl_43492	none	STRG.5530.1,blat.proc3829873.chain_1740	2	STRG.5530.2	1
scaffold_11	alt_acceptor	16465384	16465385	-	asmbl_7201	none	STRG.14328.3	1	STRG.14328.2,STRG.14328.4	2
scaffold_20	alt_donor	11566328	11566329	+	asmbl_26228	none	STRG.23649.1,blat.proc3829883.chain_793	2	STRG.23649.2,blat.proc3829883.chain_792	2
scaffold_19	alt_acceptor	5994963	5994964	-	asmbl_21396	none	STRG.22123.2,Trinity_GG_29320_c0_g1_i1,blat.proc3829897.chain_2820	3	STRG.22123.1,Trinity_GG_29320_c0_g1_i2,blat.proc3829897.chain_2821	3
scaffold_6	alt_acceptor	12484407	12484408	+	asmbl_47341	none	STRG.8000.4	1	STRG.8000.1,Trinity_GG_4381_c0_g1_i2,blat.proc3829875.chain_392	3
scaffold_8	alternate_exon	17764367	17764581	+	asmbl_52491	none	STRG.10683.2	1	STRG.10683.1,Trinity_GG_5903_c0_g1_i2,blat.proc3829875.chain_3115	3
scaffold_5	skipped_exon	7410771	7411904	-	asmbl_45558	none	STRG.6135.1	1	STRG.6135.2,STRG.6135.3	2
scaffold_4	ends_in_intron	12711108	12711108	+	asmbl_43071	none	STRG.4912.2,blat.proc3829873.chain_1197	2	STRG.4912.1,blat.proc3829873.chain_1195,blat.proc3829873.chain_1201	3
scaffold_4	spliced_intron	17472694	17472804	-	asmbl_42020	none	Trinity_GG_19987_c0_g1_i2,blat.proc3829889.chain_1392	2	STRG.5334.1,Trinity_GG_19987_c0_g1_i1,blat.proc3829889.chain_1393	3
scaffold_17	spliced_intron	9533968	9534048	+	asmbl_18228,asmbl_18229,asmbl_18230,asmbl_18231,asmbl_18235	none	STRG.20566.1,STRG.20566.2,STRG.20566.3,STRG.20566.4,Trinity_GG_11250_c0_g1_i7,blat.proc3829881.chain_1352,blat.proc3829881.chain_1353,blat.proc3829881.chain_1356	8	Trinity_GG_11250_c0_g1_i4,blat.proc3829881.chain_1349,blat.proc3829881.chain_1350	3
scaffold_24	retained_intron	8954743	8954815	+	asmbl_32467,asmbl_32468	none	Trinity_GG_14866_c0_g1_i1,blat.proc3829885.chain_25,blat.proc3829885.chain_26	3	STRG.26896.1,Trinity_GG_14866_c0_g1_i3,blat.proc3829885.chain_27	3
scaffold_1	retained_intron	5738505	5739159	+	asmbl_1769,asmbl_1771	none	blat.proc3829871.chain_370,blat.proc3829871.chain_375	2	blat.proc3829871.chain_371	1
scaffold_1	ends_in_intron	12913726	12913726	+	asmbl_2258	none	blat.proc3829871.chain_977	1	STRG.919.1,blat.proc3829871.chain_974,blat.proc3829871.chain_976	3
scaffold_8	alt_acceptor	16043939	16043940	-	asmbl_53358	none	STRG.10582.2,blat.proc3829891.chain_2668	2	STRG.10582.1,blat.proc3829891.chain_2667	2
scaffold_6	ends_in_intron	13985950	13985950	-	asmbl_48907	none	Trinity_GG_21643_c3_g1_i1,blat.proc3829891.chain_462	2	STRG.8147.1,blat.proc3829891.chain_452,blat.proc3829891.chain_453,blat.proc3829891.chain_458	4
scaffold_7	spliced_intron	15248021	15248121	+	asmbl_51300,asmbl_51302,asmbl_51303,asmbl_51305	none	STRG.9529.1,STRG.9529.2,STRG.9529.3,blat.proc3829875.chain_2038,blat.proc3829875.chain_2039,blat.proc3829875.chain_2041,blat.proc3829875.chain_2042	7	Trinity_GG_5316_c0_g1_i1,blat.proc3829875.chain_2037,blat.proc3829875.chain_2040	3
scaffold_5	retained_exon	4628791	4628841	-	asmbl_45353	none	STRG.5909.1,blat.proc3829889.chain_1980	2	STRG.5909.2,blat.proc3829889.chain_1978	2
scaffold_4	ends_in_intron	16804027	16804027	-	asmbl_41967	none	blat.proc3829889.chain_1241	1	STRG.5267.1,STRG.5267.2,blat.proc3829889.chain_1242	3
scaffold_16	retained_intron	809175	809692	-	asmbl_16078,asmbl_16081,asmbl_16083	none	STRG.19052.3,blat.proc3829895.chain_3746,blat.proc3829895.chain_3747	3	STRG.19052.1,STRG.19052.2,STRG.19052.4,blat.proc3829895.chain_3748,blat.proc3829895.chain_3749	5
scaffold_27	ends_in_intron	3990445	3990445	+	asmbl_36211	none	blat.proc3829885.chain_1936	1	STRG.28848.2,blat.proc3829885.chain_1938,blat.proc3829885.chain_1939,blat.proc3829885.chain_1940	4
scaffold_4	starts_in_intron	6303651	6303651	+	asmbl_42727	none	STRG.4502.2	1	STRG.4502.1,Trinity_GG_2497_c0_g1_i1,Trinity_GG_2497_c0_g1_i6,Trinity_GG_2497_c0_g1_i8,Trinity_GG_2497_c0_g1_i9,blat.proc3829873.chain_863,blat.proc3829873.chain_865,blat.proc3829873.chain_866,blat.proc3829873.chain_867,blat.proc3829873.chain_868,blat.proc3829873.chain_870,blat.proc3829873.chain_871	12
scaffold_13	starts_in_intron	656494	656494	+	asmbl_10467	none	STRG.15438.2,blat.proc3829879.chain_117	2	STRG.15438.1	1
scaffold_21	alternate_exon	8131428	8133935	-	asmbl_27910	none	STRG.24334.5,blat.proc3829899.chain_1385	2	blat.proc3829899.chain_1384	1
scaffold_70	alt_acceptor	7908	7909	-	asmbl_51542	none	STRG.30086.2	1	STRG.30086.1,blat.proc3829901.chain_3187,blat.proc3829901.chain_3188	3
scaffold_500	alt_acceptor	1448	1449	+	asmbl_46447	none	blat.proc3829885.chain_3367	1	blat.proc3829885.chain_3366,blat.proc3829885.chain_3369	2
scaffold_13	alt_donor	3746398	3746399	+	asmbl_10722,asmbl_10723	none	STRG.15683.1,Trinity_GG_8626_c0_g1_i4,blat.proc3829879.chain_382	3	STRG.15683.2,Trinity_GG_8626_c0_g1_i1,blat.proc3829879.chain_381	3
scaffold_8	ends_in_intron	6023571	6023571	+	asmbl_51910	none	blat.proc3829875.chain_2556	1	blat.proc3829875.chain_2552,blat.proc3829875.chain_2553,blat.proc3829875.chain_2557	3
scaffold_25	skipped_exon	2689826	2691172	+	asmbl_33399,asmbl_33401	none	STRG.27213.2,blat.proc3829885.chain_261	2	STRG.27213.1	1
scaffold_3	starts_in_intron	7727082	7727082	+	asmbl_40137	none	STRG.3360.1	1	blat.proc3829871.chain_3540,blat.proc3829871.chain_3541	2
scaffold_12	alt_donor	7600422	7600423	+	asmbl_8732	none	STRG.14823.2	1	STRG.14823.1,blat.proc3829877.chain_3316	2
scaffold_4	retained_intron	15728040	15728147	-	asmbl_41871,asmbl_41872	none	STRG.5163.2,blat.proc3829889.chain_1186	2	STRG.5163.1,blat.proc3829889.chain_1184,blat.proc3829889.chain_1185	3
scaffold_26	alternate_exon	5843571	5844156	+	asmbl_35570	none	STRG.28267.1,Trinity_GG_15631_c1_g1_i1,blat.proc3829885.chain_1296	3	STRG.28266.1,Trinity_GG_15631_c0_g1_i1,blat.proc3829885.chain_1295	3
scaffold_15	starts_in_intron	14664797	14664797	+	asmbl_14643	none	Trinity_GG_10354_c0_g1_i3,blat.proc3829879.chain_3460	2	STRG.18874.1,Trinity_GG_10354_c0_g1_i4,blat.proc3829879.chain_3459	3
scaffold_19	retained_intron	12437236	12437460	+	asmbl_22607,asmbl_22611	none	blat.proc3829881.chain_3515,blat.proc3829881.chain_3520	2	STRG.22558.1,blat.proc3829881.chain_3516,blat.proc3829881.chain_3517,blat.proc3829881.chain_3518,blat.proc3829881.chain_3519	5
scaffold_15	retained_intron	5835875	5836379	+	asmbl_14169	none	STRG.18253.1,Trinity_GG_10010_c0_g1_i1,blat.proc3829879.chain_2883	3	Trinity_GG_10010_c0_g2_i1,blat.proc3829879.chain_2884	2
scaffold_6	ends_in_intron	18048042	18048042	-	asmbl_49163	none	STRG.8479.3,blat.proc3829891.chain_772	2	STRG.8479.2,blat.proc3829891.chain_774	2
scaffold_9	retained_intron	13040881	13040907	+	asmbl_54463	none	STRG.11604.2	1	STRG.11604.1	1
scaffold_9	retained_exon	9656293	9656349	+	asmbl_54205,asmbl_54207,asmbl_54209	none	STRG.11332.1,STRG.11332.2,blat.proc3829877.chain_100,blat.proc3829877.chain_98	4	blat.proc3829877.chain_101	1
scaffold_9	skipped_exon	14315617	14316311	-	asmbl_55442	none	STRG.11669.2	1	STRG.11669.1	1
scaffold_3	alt_donor	10983860	10983861	-	asmbl_39087	none	STRG.3533.1	1	STRG.3533.2	1
scaffold_13	starts_in_intron	3691690	3691690	-	asmbl_9521	none	Trinity_GG_25762_c0_g1_i2,blat.proc3829895.chain_361	2	STRG.15669.1,Trinity_GG_25762_c0_g1_i1,blat.proc3829895.chain_362	3
scaffold_3	ends_in_intron	8176306	8176306	-	asmbl_38973	none	blat.proc3829887.chain_3135	1	blat.proc3829887.chain_3128	1
scaffold_8	retained_intron	12124410	12124600	-	asmbl_53183	none	blat.proc3829891.chain_2513	1	STRG.10395.1,blat.proc3829891.chain_2514	2
scaffold_7	starts_in_intron	18151515	18151515	+	asmbl_51403	none	STRG.9643.2	1	STRG.9643.1	1
scaffold_17	starts_in_intron	6799513	6799513	+	asmbl_18005	none	blat.proc3829881.chain_1108	1	STRG.20322.1,STRG.20322.2,blat.proc3829881.chain_1106,blat.proc3829881.chain_1107	4
scaffold_19	spliced_intron	8805742	8805841	+	asmbl_22358	none	STRG.22319.1,blat.proc3829881.chain_3246	2	STRG.22319.3	1
scaffold_24	spliced_intron	2065131	2065376	-	asmbl_32761	none	STRG.26415.1	1	STRG.26415.2,Trinity_GG_31773_c0_g1_i3,blat.proc3829899.chain_3478	3
scaffold_4	retained_intron	4414352	4414502	+	asmbl_42571,asmbl_42582	none	STRG.4344.3,blat.proc3829873.chain_684,blat.proc3829873.chain_694	3	blat.proc3829873.chain_693	1
scaffold_5	alt_donor	9704701	9704702	-	asmbl_45678	none	STRG.6283.2	1	blat.proc3829889.chain_2376	1
scaffold_6	starts_in_intron	12638617	12638617	+	asmbl_47361	none	Trinity_GG_4352_c0_g1_i2,blat.proc3829875.chain_335	2	STRG.8015.2,Trinity_GG_4352_c0_g1_i3,blat.proc3829875.chain_333,blat.proc3829875.chain_334	4
scaffold_28	alternate_exon	8410001	8410030	+	asmbl_38435	none	STRG.29888.1	1	STRG.29888.2	1
scaffold_5	spliced_intron	15560627	15561046	-	asmbl_46085	none	blat.proc3829889.chain_2818	1	STRG.6744.1,blat.proc3829889.chain_2820,blat.proc3829889.chain_2821	3
scaffold_16	alt_acceptor	9032989	9032990	+	asmbl_17256	none	STRG.19501.4	1	STRG.19501.1,STRG.19501.2,blat.proc3829881.chain_387,blat.proc3829881.chain_388,blat.proc3829881.chain_389	5
scaffold_9	skipped_exon	6919651	6920387	-	asmbl_55068	none	blat.proc3829891.chain_3349	1	STRG.11195.1,STRG.11195.2,blat.proc3829891.chain_3350,blat.proc3829891.chain_3351,blat.proc3829891.chain_3352	5
scaffold_13	retained_intron	8235692	8236213	-	asmbl_9921	none	blat.proc3829895.chain_901	1	STRG.16101.1,blat.proc3829895.chain_898,blat.proc3829895.chain_899,blat.proc3829895.chain_900	4
scaffold_11	alt_donor	4688733	4688734	-	asmbl_6587,asmbl_6588	none	STRG.13547.3,STRG.13547.5	2	STRG.13547.1,STRG.13547.2,blat.proc3829893.chain_2029,blat.proc3829893.chain_2031	4
scaffold_7	retained_intron	12387853	12388105	-	asmbl_50017,asmbl_50021	none	blat.proc3829891.chain_1534,blat.proc3829891.chain_1537	2	blat.proc3829891.chain_1538	1
scaffold_9	alternate_exon	6920093	6920278	-	asmbl_55067	none	blat.proc3829891.chain_3348	1	blat.proc3829891.chain_3349	1
scaffold_26	alternate_exon	422390	422673	+	asmbl_35208,asmbl_35211,asmbl_35212	none	STRG.27850.1,blat.proc3829885.chain_852,blat.proc3829885.chain_853,blat.proc3829885.chain_854	4	STRG.27850.2,blat.proc3829885.chain_855	2
scaffold_6	retained_intron	12911385	12911667	+	asmbl_47382	none	STRG.8045.1,Trinity_GG_4355_c0_g1_i1,Trinity_GG_4355_c0_g1_i2,blat.proc3829875.chain_341,blat.proc3829875.chain_342	5	STRG.8045.2,blat.proc3829875.chain_340	2
scaffold_27	retained_intron	975659	975913	+	asmbl_35938	none	blat.proc3829885.chain_1618	1	STRG.28576.1,STRG.28576.2,Trinity_GG_15816_c0_g1_i1,Trinity_GG_15816_c0_g1_i2,Trinity_GG_15816_c0_g1_i5,Trinity_GG_15816_c0_g1_i6,blat.proc3829885.chain_1616,blat.proc3829885.chain_1617,blat.proc3829885.chain_1619,blat.proc3829885.chain_1621	10
scaffold_5	skipped_exon	18327976	18328372	+	asmbl_44905	none	STRG.6956.2	1	STRG.6956.1,blat.proc3829873.chain_3098	2
scaffold_8	alternate_exon	17765022	17766335	+	asmbl_52489	none	STRG.10683.1,Trinity_GG_5903_c0_g1_i2,blat.proc3829875.chain_3115	3	STRG.10683.2	1
scaffold_28	alt_acceptor	9565716	9565717	+	asmbl_38486	none	blat.proc3829885.chain_3033	1	STRG.29963.1	1
scaffold_15	spliced_intron	8620031	8620119	+	asmbl_14285,asmbl_14287,asmbl_14288	none	STRG.18401.1,STRG.18401.2,blat.proc3829879.chain_3012,blat.proc3829879.chain_3013	4	Trinity_GG_10092_c0_g1_i2,blat.proc3829879.chain_3014	2
scaffold_9	retained_intron	16568288	16568413	+	asmbl_54573,asmbl_54575	none	Trinity_GG_6586_c0_g1_i10,Trinity_GG_6586_c0_g1_i23,blat.proc3829877.chain_552,blat.proc3829877.chain_555	4	STRG.11798.1,Trinity_GG_6586_c0_g1_i14,Trinity_GG_6586_c0_g1_i15,Trinity_GG_6586_c0_g1_i21,Trinity_GG_6586_c0_g1_i5,blat.proc3829877.chain_554,blat.proc3829877.chain_556,blat.proc3829877.chain_557,blat.proc3829877.chain_558	9
scaffold_10	alternate_exon	3928786	3929132	-	asmbl_3155	none	STRG.12230.4,blat.proc3829893.chain_695	2	STRG.12230.1,blat.proc3829893.chain_693,blat.proc3829893.chain_694	3
scaffold_11	starts_in_intron	5867612	5867612	-	asmbl_6663	none	blat.proc3829893.chain_2101	1	STRG.13641.2,STRG.13641.3,blat.proc3829893.chain_2103,blat.proc3829893.chain_2104	4
scaffold_5	spliced_intron	9086221	9086396	+	asmbl_44259,asmbl_44262,asmbl_44263,asmbl_44264,asmbl_44265,asmbl_44266,asmbl_44267,asmbl_44268,asmbl_44269,asmbl_44270,asmbl_44271	none	STRG.6237.1,STRG.6237.2,STRG.6237.3,STRG.6237.4,STRG.6237.5,blat.proc3829873.chain_2418,blat.proc3829873.chain_2419,blat.proc3829873.chain_2421,blat.proc3829873.chain_2422,blat.proc3829873.chain_2423,blat.proc3829873.chain_2424,blat.proc3829873.chain_2426	12	Trinity_GG_3425_c0_g1_i2,Trinity_GG_3425_c0_g1_i4,blat.proc3829873.chain_2420,blat.proc3829873.chain_2425	4
scaffold_52	skipped_exon	1519	1786	-	asmbl_46486	none	STRG.30037.3	1	STRG.30037.1,STRG.30037.2,blat.proc3829901.chain_3148,blat.proc3829901.chain_3149	4
scaffold_15	alt_donor	9600327	9600328	+	asmbl_14339	none	STRG.18465.2,blat.proc3829879.chain_3035	2	STRG.18465.1,blat.proc3829879.chain_3034	2
scaffold_10	retained_intron	4058608	4058815	-	asmbl_3165,asmbl_3168	none	STRG.12237.6,STRG.12237.7,blat.proc3829893.chain_707	3	STRG.12237.2,STRG.12237.3,blat.proc3829893.chain_710	3
scaffold_2	starts_in_intron	7828290	7828290	-	asmbl_23304,asmbl_23305,asmbl_23306	none	STRG.2079.2,STRG.2079.3,Trinity_GG_18172_c0_g1_i2,Trinity_GG_18172_c0_g1_i3,blat.proc3829887.chain_1977,blat.proc3829887.chain_1978	6	STRG.2079.1	1
scaffold_15	starts_in_intron	7801128	7801128	-	asmbl_15332	none	blat.proc3829895.chain_3108	1	STRG.18350.1,blat.proc3829895.chain_3109,blat.proc3829895.chain_3110	3
scaffold_5	ends_in_intron	13802230	13802230	-	asmbl_45939	none	Trinity_GG_20712_c0_g2_i2,blat.proc3829889.chain_2656	2	STRG.6592.2,blat.proc3829889.chain_2652,blat.proc3829889.chain_2655	3
scaffold_11	alt_acceptor	788020	788021	+	asmbl_5257	none	STRG.13265.2,blat.proc3829877.chain_1785	2	STRG.13265.1,blat.proc3829877.chain_1784	2
scaffold_17	ends_in_intron	7090530	7090530	-	asmbl_19080	none	Trinity_GG_28457_c0_g1_i1,blat.proc3829897.chain_1308	2	STRG.20363.1,Trinity_GG_28457_c0_g1_i2,blat.proc3829897.chain_1309	3
scaffold_23	spliced_intron	2127756	2128017	-	asmbl_31408,asmbl_31409	none	STRG.25661.1,STRG.25661.2,Trinity_GG_31355_c0_g1_i1,Trinity_GG_31355_c0_g1_i2,blat.proc3829899.chain_2759,blat.proc3829899.chain_2760	6	Trinity_GG_31355_c0_g1_i4,blat.proc3829899.chain_2761	2
scaffold_4	alt_donor	18998198	18998199	+	asmbl_43465	none	STRG.5477.1,Trinity_GG_3026_c0_g1_i1,blat.proc3829873.chain_1726	3	STRG.5477.2,Trinity_GG_3026_c0_g1_i2,blat.proc3829873.chain_1725	3
scaffold_20	starts_in_intron	4292046	4292046	+	asmbl_25725	none	Trinity_GG_12718_c0_g1_i2,blat.proc3829883.chain_180	2	STRG.23098.1,Trinity_GG_12718_c0_g1_i1,blat.proc3829883.chain_181	3
scaffold_1	starts_in_intron	12396838	12396838	+	asmbl_2188	none	Trinity_GG_518_c0_g1_i2,blat.proc3829871.chain_933	2	STRG.850.1,blat.proc3829871.chain_934	2
scaffold_9	alt_donor	12009125	12009126	+	asmbl_54387	none	STRG.11514.1,Trinity_GG_6415_c0_g1_i1,blat.proc3829877.chain_269	3	STRG.11514.2,Trinity_GG_6415_c3_g1_i1,blat.proc3829877.chain_272	3
scaffold_1	retained_intron	14274324	14274482	+	asmbl_2343,asmbl_2348	none	STRG.1020.2,blat.proc3829871.chain_1118,blat.proc3829871.chain_1119	3	STRG.1020.1,blat.proc3829871.chain_1117	2
scaffold_21	alternate_exon	7506929	7507041	-	asmbl_27850,asmbl_27853	none	STRG.24269.3,blat.proc3829899.chain_1354	2	STRG.24269.1,STRG.24269.2,blat.proc3829899.chain_1357	3
scaffold_3	retained_intron	5006311	5007041	+	asmbl_40011	none	STRG.3199.4,Trinity_GG_1799_c0_g2_i4,Trinity_GG_1799_c4_g1_i1,blat.proc3829871.chain_3362,blat.proc3829871.chain_3366	5	STRG.3199.1,STRG.3199.2	2
scaffold_22	spliced_intron	326720	327593	+	asmbl_29140	none	STRG.24672.1,Trinity_GG_13635_c0_g1_i2,blat.proc3829883.chain_1710	3	Trinity_GG_13635_c0_g1_i1,blat.proc3829883.chain_1709	2
scaffold_7	ends_in_intron	732864	732864	-	asmbl_49513	none	Trinity_GG_21937_c0_g2_i1,blat.proc3829891.chain_976	2	STRG.8601.1,STRG.8601.2,Trinity_GG_21937_c0_g1_i1,blat.proc3829891.chain_974,blat.proc3829891.chain_975	5
scaffold_11	ends_in_intron	11944364	11944364	-	asmbl_7025	none	Trinity_GG_24916_c7_g1_i1,blat.proc3829893.chain_2570	2	STRG.14160.1,STRG.14160.2,STRG.14160.3,STRG.14160.4,STRG.14160.5,STRG.14160.6,blat.proc3829893.chain_2558	7
scaffold_2	alt_acceptor	13077482	13077483	-	asmbl_23503,asmbl_23505,asmbl_23510	none	STRG.2340.1,blat.proc3829887.chain_2255,blat.proc3829887.chain_2256,blat.proc3829887.chain_2262	4	STRG.2340.2,STRG.2340.3,blat.proc3829887.chain_2257,blat.proc3829887.chain_2258,blat.proc3829887.chain_2259,blat.proc3829887.chain_2260	6
scaffold_20	retained_intron	10384754	10385038	+	asmbl_26112	none	blat.proc3829883.chain_590	1	STRG.23569.1,STRG.23569.2,STRG.23569.3,Trinity_GG_12979_c0_g1_i5,Trinity_GG_12979_c0_g1_i6,blat.proc3829883.chain_591,blat.proc3829883.chain_592	7
scaffold_12	retained_intron	15694711	15694787	+	asmbl_9099	none	blat.proc3829879.chain_19	1	STRG.15349.1,blat.proc3829879.chain_20	2
scaffold_9	alt_donor	17743896	17743897	+	asmbl_54616,asmbl_54617,asmbl_54618,asmbl_54619,asmbl_54620	none	STRG.11853.1,STRG.11853.2,blat.proc3829877.chain_521,blat.proc3829877.chain_522,blat.proc3829877.chain_523,blat.proc3829877.chain_526,blat.proc3829877.chain_527	7	STRG.11853.3,blat.proc3829877.chain_525	2
scaffold_3	retained_intron	9518619	9518734	+	asmbl_40184	none	Trinity_GG_1959_c0_g1_i3,blat.proc3829871.chain_3637	2	STRG.3434.1,STRG.3434.2,Trinity_GG_1959_c0_g1_i1,blat.proc3829871.chain_3639,blat.proc3829871.chain_3641	5
scaffold_9	alt_acceptor	16738937	16738938	-	asmbl_55587	none	STRG.11811.3	1	STRG.11811.1,STRG.11811.2,Trinity_GG_23557_c0_g1_i2,Trinity_GG_23557_c0_g1_i6,blat.proc3829893.chain_219,blat.proc3829893.chain_220	6
scaffold_8	retained_intron	16503765	16503928	-	asmbl_53406,asmbl_53410,asmbl_53415	none	STRG.10621.2,Trinity_GG_22960_c0_g1_i18,Trinity_GG_22960_c0_g1_i19,Trinity_GG_22960_c0_g1_i24,blat.proc3829891.chain_2856,blat.proc3829891.chain_2857,blat.proc3829891.chain_2872	7	STRG.10621.1,Trinity_GG_22960_c0_g1_i9,blat.proc3829891.chain_2858,blat.proc3829891.chain_2859,blat.proc3829891.chain_2862,blat.proc3829891.chain_2865,blat.proc3829891.chain_2871	7
scaffold_7	alt_donor	12082936	12082937	+	asmbl_51100	none	STRG.9310.3	1	STRG.9310.1,STRG.9310.2,Trinity_GG_5111_c0_g1_i1,Trinity_GG_5111_c0_g1_i2,Trinity_GG_5111_c0_g1_i3,blat.proc3829875.chain_1656,blat.proc3829875.chain_1657,blat.proc3829875.chain_1658,blat.proc3829875.chain_1660	9
scaffold_4	skipped_exon	16434070	16435033	-	asmbl_41920,asmbl_41921	none	STRG.5221.2,STRG.5221.3	2	STRG.5221.1	1
scaffold_11	alt_acceptor	9950767	9950768	-	asmbl_6950	none	STRG.14010.2	1	STRG.14010.1,blat.proc3829893.chain_2418	2
scaffold_1	alt_acceptor	13882915	13882916	-	asmbl_858,asmbl_860,asmbl_862,asmbl_863	none	STRG.993.1,STRG.993.2,STRG.993.4,blat.proc3829887.chain_865,blat.proc3829887.chain_867,blat.proc3829887.chain_868	6	STRG.993.3,STRG.993.5,blat.proc3829887.chain_866	3
scaffold_21	starts_in_intron	472403	472403	+	asmbl_28287	none	Trinity_GG_13157_c0_g1_i1,blat.proc3829883.chain_898	2	STRG.23729.1,blat.proc3829883.chain_900,blat.proc3829883.chain_901	3
scaffold_5	ends_in_intron	12556869	12556869	-	asmbl_45850	none	Trinity_GG_20661_c0_g1_i1,blat.proc3829889.chain_2572	2	STRG.6484.1,Trinity_GG_20661_c0_g1_i3,blat.proc3829889.chain_2574	3
scaffold_12	starts_in_intron	13657364	13657364	-	asmbl_8084	none	blat.proc3829893.chain_3529	1	STRG.15207.1,blat.proc3829893.chain_3528	2
scaffold_14	alt_acceptor	6951268	6951269	-	asmbl_13152	none	STRG.17119.2,Trinity_GG_26602_c0_g1_i1,blat.proc3829895.chain_1792	3	STRG.17119.1	1
scaffold_23	ends_in_intron	9537086	9537086	-	asmbl_31824	none	blat.proc3829899.chain_3256	1	STRG.26162.1	1
scaffold_9	starts_in_intron	9682940	9682940	-	asmbl_55199	none	STRG.11330.1	1	blat.proc3829891.chain_3424	1
scaffold_3	spliced_intron	13419144	13419405	-	asmbl_39215,asmbl_39217	none	STRG.3690.2,STRG.3690.5	2	STRG.3690.1,STRG.3690.3,Trinity_GG_19014_c0_g1_i4,blat.proc3829887.chain_3422	4
scaffold_6	alt_acceptor	600726	600727	-	asmbl_47992	none	STRG.7116.5,blat.proc3829889.chain_3099	2	STRG.7116.1,STRG.7116.2,STRG.7116.3,STRG.7116.4,blat.proc3829889.chain_3098	5
scaffold_13	starts_in_intron	15466198	15466198	+	asmbl_11487	none	Trinity_GG_9143_c1_g1_i2	1	STRG.16578.1	1
scaffold_23	spliced_intron	2604317	2604475	-	asmbl_31467	none	STRG.25703.1,blat.proc3829899.chain_2817	2	blat.proc3829899.chain_2818	1
scaffold_13	starts_in_intron	6396318	6396318	+	asmbl_10912,asmbl_10913	none	Trinity_GG_8718_c0_g1_i2,Trinity_GG_8718_c0_g1_i5,blat.proc3829879.chain_549,blat.proc3829879.chain_555	4	STRG.15914.1,STRG.15914.3,STRG.15914.4,STRG.15914.5,Trinity_GG_8718_c0_g1_i1,Trinity_GG_8718_c0_g1_i8,Trinity_GG_8718_c0_g1_i9,blat.proc3829879.chain_552,blat.proc3829879.chain_556,blat.proc3829879.chain_557	10
scaffold_13	retained_intron	16250502	16250688	+	asmbl_11542	none	Trinity_GG_9162_c0_g1_i3,Trinity_GG_9183_c0_g1_i2,blat.proc3829879.chain_1372,blat.proc3829879.chain_1402	4	STRG.16665.2,blat.proc3829879.chain_1404	2
scaffold_7	retained_intron	4046121	4046335	-	asmbl_49660	none	STRG.8793.2,Trinity_GG_22021_c0_g1_i1,blat.proc3829891.chain_1136	3	STRG.8793.3,blat.proc3829891.chain_1137	2
scaffold_25	ends_in_intron	5777637	5777637	+	asmbl_33576	none	blat.proc3829885.chain_511	1	STRG.27456.1,STRG.27456.2,blat.proc3829885.chain_505	3
scaffold_19	alt_acceptor	5155677	5155678	+	asmbl_22156,asmbl_22158	none	STRG.22072.1,STRG.22072.3,blat.proc3829881.chain_3013,blat.proc3829881.chain_3014	4	STRG.22072.4,blat.proc3829881.chain_3011	2
scaffold_10	starts_in_intron	9059574	9059574	-	asmbl_3572	none	STRG.12643.3,blat.proc3829893.chain_1165	2	STRG.12643.1,STRG.12643.2,blat.proc3829893.chain_1164,blat.proc3829893.chain_1166,blat.proc3829893.chain_1168,blat.proc3829893.chain_1169	6
scaffold_13	alt_acceptor	7319175	7319176	-	asmbl_9837	none	STRG.16017.2,Trinity_GG_26025_c0_g1_i1,blat.proc3829895.chain_797	3	STRG.16017.1,Trinity_GG_26025_c0_g1_i2,blat.proc3829895.chain_796	3
scaffold_6	ends_in_intron	8173251	8173251	-	asmbl_48477,asmbl_48478	none	Trinity_GG_21366_c0_g1_i14,Trinity_GG_21366_c0_g1_i5,blat.proc3829889.chain_3714,blat.proc3829889.chain_3722	4	STRG.7691.1,STRG.7691.2,Trinity_GG_21366_c0_g1_i3,blat.proc3829889.chain_3713,blat.proc3829889.chain_3716,blat.proc3829889.chain_3717,blat.proc3829889.chain_3719,blat.proc3829889.chain_3720,blat.proc3829889.chain_3721,blat.proc3829889.chain_3724	10
scaffold_6	alt_acceptor	600778	600779	-	asmbl_47993	none	STRG.7116.3	1	STRG.7116.1,STRG.7116.2,STRG.7116.4,STRG.7116.5,blat.proc3829889.chain_3098,blat.proc3829889.chain_3099	6
scaffold_3	spliced_intron	5951454	5951658	-	asmbl_38833,asmbl_38834,asmbl_38835	none	STRG.3255.1,STRG.3255.2,STRG.3255.3,blat.proc3829887.chain_3044,blat.proc3829887.chain_3045,blat.proc3829887.chain_3046	6	STRG.3255.6,blat.proc3829887.chain_3048,blat.proc3829887.chain_3049	3
scaffold_18	retained_intron	281385	282126	+	asmbl_20311	none	STRG.20973.2,Trinity_GG_11537_c1_g1_i1,blat.proc3829881.chain_1824	3	STRG.20973.4,blat.proc3829881.chain_1823	2
scaffold_8	starts_in_intron	6904170	6904170	+	asmbl_51954	none	Trinity_GG_5586_c0_g1_i2,blat.proc3829875.chain_2538	2	STRG.10042.1,STRG.10042.2,STRG.10042.3,blat.proc3829875.chain_2536,blat.proc3829875.chain_2541	5
scaffold_16	alt_acceptor	7115564	7115565	-	asmbl_16339,asmbl_16340	none	STRG.19378.2,STRG.19378.3	2	Trinity_GG_27893_c0_g1_i1,blat.proc3829897.chain_400	2
scaffold_4	spliced_intron	4121588	4121687	-	asmbl_41235	none	STRG.4323.3,blat.proc3829889.chain_477	2	STRG.4323.2,Trinity_GG_19456_c0_g1_i5,blat.proc3829889.chain_475	3
scaffold_7	alt_donor	13197489	13197490	-	asmbl_50116	none	blat.proc3829891.chain_1694	1	STRG.9418.1,blat.proc3829891.chain_1691,blat.proc3829891.chain_1692,blat.proc3829891.chain_1695	4
scaffold_4	alt_acceptor	1907784	1907785	+	asmbl_42464	none	STRG.4202.2,blat.proc3829873.chain_556	2	STRG.4202.1	1
scaffold_16	alternate_exon	6094643	6096803	-	asmbl_16315	none	STRG.19329.2	1	blat.proc3829897.chain_381	1
scaffold_2	alt_acceptor	960788	960789	-	asmbl_22856	none	STRG.1579.2	1	STRG.1579.1,Trinity_GG_17864_c0_g1_i1,blat.proc3829887.chain_1413	3
scaffold_8	alt_donor	18251497	18251498	-	asmbl_53533	none	STRG.10723.4,Trinity_GG_22985_c0_g1_i3,blat.proc3829891.chain_2920	3	STRG.10723.1,STRG.10723.2,STRG.10723.3,STRG.10723.5,blat.proc3829891.chain_2919,blat.proc3829891.chain_2921,blat.proc3829891.chain_2922,blat.proc3829891.chain_2923,blat.proc3829891.chain_2924,blat.proc3829891.chain_2925	10
scaffold_12	alt_donor	15426912	15426913	-	asmbl_8217	none	STRG.15330.1,blat.proc3829895.chain_68	2	blat.proc3829895.chain_70	1
scaffold_7	alt_acceptor	9864326	9864327	-	asmbl_49902,asmbl_49905	none	STRG.9178.1,STRG.9178.3,blat.proc3829891.chain_1419	3	STRG.9178.4,blat.proc3829891.chain_1416	2
scaffold_28	spliced_intron	4838972	4839218	+	asmbl_38245	none	STRG.29622.3,Trinity_GG_16390_c0_g1_i2,blat.proc3829885.chain_2672	3	STRG.29622.1,STRG.29622.2,Trinity_GG_16390_c0_g1_i1,Trinity_GG_16390_c0_g1_i4,blat.proc3829885.chain_2671,blat.proc3829885.chain_2673,blat.proc3829885.chain_2674	7
scaffold_10	skipped_exon	6672572	6673240	-	asmbl_3404,asmbl_3405,asmbl_3406	none	blat.proc3829893.chain_1027,blat.proc3829893.chain_1029,blat.proc3829893.chain_1032	3	STRG.12494.6,Trinity_GG_24019_c0_g1_i11,blat.proc3829893.chain_1028	3
scaffold_18	ends_in_intron	78216	78216	+	asmbl_20281	none	Trinity_GG_11524_c0_g1_i1,blat.proc3829881.chain_1799	2	STRG.20950.1	1
scaffold_13	starts_in_intron	1237165	1237165	+	asmbl_10526	none	blat.proc3829879.chain_205	1	STRG.15478.1,STRG.15478.2,STRG.15478.4,STRG.15478.5,STRG.15478.6,STRG.15478.7,Trinity_GG_8526_c0_g2_i3,blat.proc3829879.chain_204,blat.proc3829879.chain_207	9
scaffold_25	alternate_exon	9697342	9697432	+	asmbl_33824	none	STRG.27765.1,Trinity_GG_15321_c0_g1_i1,blat.proc3829885.chain_790	3	STRG.27765.2,blat.proc3829885.chain_789	2
scaffold_13	retained_intron	6398067	6398296	+	asmbl_10914	none	blat.proc3829879.chain_551	1	STRG.15914.1,STRG.15914.2,STRG.15914.3,STRG.15914.4,STRG.15914.5,Trinity_GG_8718_c0_g1_i1,Trinity_GG_8718_c0_g1_i2,Trinity_GG_8718_c0_g1_i3,Trinity_GG_8718_c0_g1_i4,Trinity_GG_8718_c0_g1_i5,Trinity_GG_8718_c0_g1_i8,Trinity_GG_8718_c0_g1_i9,blat.proc3829879.chain_549,blat.proc3829879.chain_550,blat.proc3829879.chain_552,blat.proc3829879.chain_554,blat.proc3829879.chain_555,blat.proc3829879.chain_556,blat.proc3829879.chain_557	19
scaffold_10	alt_acceptor	1621383	1621384	+	asmbl_4233	none	STRG.12018.2,Trinity_GG_6672_c1_g1_i3,blat.proc3829877.chain_698	3	STRG.12018.1,STRG.12018.3,STRG.12018.4,Trinity_GG_6672_c1_g1_i1,Trinity_GG_6672_c1_g1_i2,blat.proc3829877.chain_697,blat.proc3829877.chain_699	7
scaffold_15	spliced_intron	13972358	13972548	+	asmbl_14606,asmbl_14609	none	STRG.18817.1,Trinity_GG_10330_c0_g1_i1,blat.proc3829879.chain_3419,blat.proc3829879.chain_3421	4	Trinity_GG_10330_c0_g1_i5,blat.proc3829879.chain_3418	2
scaffold_8	alt_acceptor	7392370	7392371	+	asmbl_51970	none	STRG.10052.1,blat.proc3829875.chain_2480	2	STRG.10052.2	1
scaffold_27	alt_donor	2884509	2884510	-	asmbl_36818,asmbl_36819	none	STRG.28754.1,STRG.28754.2,blat.proc3829901.chain_1866,blat.proc3829901.chain_1867	4	STRG.28754.3	1
scaffold_7	starts_in_intron	4047221	4047221	-	asmbl_49662	none	blat.proc3829891.chain_1134	1	STRG.8793.1,STRG.8793.2	2
scaffold_15	spliced_intron	3363099	3363201	-	asmbl_15095,asmbl_15096	none	STRG.18095.1,STRG.18095.2,blat.proc3829895.chain_2838	3	Trinity_GG_27191_c0_g1_i4,blat.proc3829895.chain_2839	2
scaffold_2	alternate_exon	20127320	20127514	-	asmbl_23898	none	blat.proc3829871.chain_2940	1	STRG.2837.1	1
scaffold_15	spliced_intron	15409801	15409903	+	asmbl_14717,asmbl_14718	none	STRG.18921.2,STRG.18921.3,blat.proc3829879.chain_3515,blat.proc3829879.chain_3517	4	STRG.18921.4,STRG.18921.6,blat.proc3829879.chain_3516	3
scaffold_7	ends_in_intron	12702389	12702389	+	asmbl_51170	none	blat.proc3829875.chain_1827	1	STRG.9374.1,STRG.9374.2,blat.proc3829875.chain_1826	3
scaffold_15	alt_donor	2782676	2782677	-	asmbl_15057	none	STRG.18054.3	1	STRG.18054.2,blat.proc3829895.chain_2771	2
scaffold_11	ends_in_intron	1983154	1983154	-	asmbl_6441	none	blat.proc3829893.chain_1817	1	STRG.13349.1,STRG.13349.2,blat.proc3829893.chain_1815,blat.proc3829893.chain_1816	4
scaffold_9	retained_intron	15396303	15396380	+	asmbl_54548	none	Trinity_GG_6522_c0_g1_i4,blat.proc3829877.chain_444	2	STRG.11731.1,STRG.11731.2,STRG.11731.3,Trinity_GG_6522_c0_g1_i1,Trinity_GG_6522_c0_g1_i5,Trinity_GG_6522_c0_g1_i6,blat.proc3829877.chain_441,blat.proc3829877.chain_442,blat.proc3829877.chain_443	9
scaffold_19	ends_in_intron	5627334	5627334	+	asmbl_22188	none	STRG.22116.4	1	STRG.22116.1,blat.proc3829881.chain_3077	2
scaffold_17	alternate_exon	14349636	14349855	-	asmbl_19476	none	blat.proc3829897.chain_1804	1	STRG.20903.1,blat.proc3829897.chain_1803	2
scaffold_14	alt_acceptor	8405893	8405894	-	asmbl_13291,asmbl_13293	none	STRG.17264.3,STRG.17264.4	2	STRG.17264.1,STRG.17264.2,blat.proc3829895.chain_1977	3
scaffold_6	alternate_exon	17188309	17188423	-	asmbl_49116	none	STRG.8422.2	1	STRG.8422.1,Trinity_GG_21805_c0_g1_i1,Trinity_GG_21805_c0_g1_i2,blat.proc3829891.chain_725,blat.proc3829891.chain_726	5
scaffold_13	alternate_exon	4600057	4601441	-	asmbl_9605	none	Trinity_GG_25880_c0_g1_i10,blat.proc3829895.chain_526,blat.proc3829895.chain_533	3	Trinity_GG_25880_c0_g1_i1,blat.proc3829895.chain_530	2
scaffold_8	retained_intron	18163021	18163268	-	asmbl_53526	none	blat.proc3829891.chain_2912	1	STRG.10720.1,Trinity_GG_22981_c0_g1_i1,Trinity_GG_22981_c0_g1_i2,Trinity_GG_22981_c0_g1_i6,Trinity_GG_22981_c0_g1_i9,blat.proc3829891.chain_2907,blat.proc3829891.chain_2908,blat.proc3829891.chain_2909,blat.proc3829891.chain_2911	9
scaffold_7	alt_acceptor	1461345	1461346	-	asmbl_49553	none	STRG.8637.2	1	STRG.8637.1,blat.proc3829891.chain_1024	2
scaffold_15	skipped_exon	15184589	15185470	+	asmbl_14679,asmbl_14680,asmbl_14681,asmbl_14686,asmbl_14688,asmbl_14692	none	STRG.18906.2,blat.proc3829879.chain_3471,blat.proc3829879.chain_3472,blat.proc3829879.chain_3473,blat.proc3829879.chain_3480,blat.proc3829879.chain_3484	6	STRG.18906.1,STRG.18906.3,blat.proc3829879.chain_3474,blat.proc3829879.chain_3475,blat.proc3829879.chain_3476,blat.proc3829879.chain_3477,blat.proc3829879.chain_3478,blat.proc3829879.chain_3479,blat.proc3829879.chain_3481,blat.proc3829879.chain_3482,blat.proc3829879.chain_3485,blat.proc3829879.chain_3486,blat.proc3829879.chain_3487	13
scaffold_506	spliced_intron	2659	3028	+	asmbl_46455,asmbl_46458	none	STRG.30329.1,blat.proc3829885.chain_3373,blat.proc3829885.chain_3374	3	blat.proc3829885.chain_3371	1
scaffold_11	spliced_intron	3486134	3486289	+	asmbl_5395	none	STRG.13463.1	1	Trinity_GG_7371_c1_g1_i2,blat.proc3829877.chain_1909,blat.proc3829877.chain_1910	3
scaffold_3	alternate_exon	14578469	14578602	-	asmbl_39345	none	STRG.3795.2,blat.proc3829887.chain_3612	2	STRG.3795.3,blat.proc3829887.chain_3615	2
scaffold_7	alt_donor	3336958	3336959	-	asmbl_49602	none	STRG.8726.3,blat.proc3829891.chain_1082	2	STRG.8726.2,blat.proc3829891.chain_1081	2
scaffold_8	retained_intron	9872527	9872652	-	asmbl_53057	none	blat.proc3829891.chain_2379	1	STRG.10226.1,blat.proc3829891.chain_2378	2
scaffold_12	alt_acceptor	4104753	4104754	+	asmbl_8541	none	STRG.14584.1	1	STRG.14584.3	1
scaffold_7	retained_intron	11851032	11851796	+	asmbl_51071	none	STRG.9296.2,Trinity_GG_5157_c0_g1_i2,blat.proc3829875.chain_1749,blat.proc3829875.chain_1752	4	STRG.9296.1,blat.proc3829875.chain_1750	2
scaffold_15	alt_acceptor	12000469	12000470	-	asmbl_15563	none	STRG.18630.1,Trinity_GG_27487_c0_g1_i3,blat.proc3829895.chain_3415	3	STRG.18630.2,STRG.18630.3,Trinity_GG_27487_c0_g1_i1,Trinity_GG_27487_c0_g1_i7,blat.proc3829895.chain_3418,blat.proc3829895.chain_3420	6
scaffold_14	spliced_intron	5597398	5598031	+	asmbl_12008	none	STRG.17026.1,blat.proc3829879.chain_1782	2	blat.proc3829879.chain_1781	1
scaffold_12	starts_in_intron	11357451	11357451	-	asmbl_7938	none	blat.proc3829893.chain_3476	1	STRG.15063.1,blat.proc3829893.chain_3475,blat.proc3829893.chain_3477	3
scaffold_22	alt_acceptor	8824801	8824802	+	asmbl_29579	none	STRG.25223.4	1	STRG.25223.2	1
scaffold_17	alt_acceptor	2432698	2432699	+	asmbl_17781,asmbl_17783	none	STRG.20019.1,STRG.20019.3,Trinity_GG_10968_c0_g1_i2,blat.proc3829881.chain_846	4	STRG.20019.2,STRG.20019.4,Trinity_GG_10968_c0_g1_i4,blat.proc3829881.chain_848	4
scaffold_9	ends_in_intron	3847255	3847255	-	asmbl_54909	none	blat.proc3829891.chain_3110	1	STRG.10995.1,blat.proc3829891.chain_3112	2
scaffold_28	retained_intron	8481657	8481677	+	asmbl_38447	none	STRG.29903.1,blat.proc3829885.chain_3006	2	STRG.29903.2	1
scaffold_6	alt_acceptor	2902540	2902541	+	asmbl_46729	none	blat.proc3829873.chain_3410	1	blat.proc3829873.chain_3409	1
scaffold_27	alt_donor	1008145	1008146	-	asmbl_36688	none	STRG.28578.2	1	STRG.28578.1,Trinity_GG_32994_c0_g1_i1,blat.proc3829901.chain_1769	3
scaffold_10	alt_donor	393217	393218	+	asmbl_4135	none	STRG.11918.1,Trinity_GG_6634_c0_g1_i1,blat.proc3829877.chain_628	3	STRG.11918.2,STRG.11918.3,Trinity_GG_6634_c0_g1_i2,blat.proc3829877.chain_629	4
scaffold_20	starts_in_intron	6759683	6759683	+	asmbl_25833	none	blat.proc3829883.chain_370	1	STRG.23241.1,blat.proc3829883.chain_371	2
scaffold_5	spliced_intron	939477	939513	-	asmbl_45187	none	STRG.5635.2	1	STRG.5635.1	1
scaffold_25	alt_acceptor	6073630	6073631	-	asmbl_34287,asmbl_34296	none	STRG.27475.1,blat.proc3829901.chain_724,blat.proc3829901.chain_725	3	STRG.27475.2,blat.proc3829901.chain_726	2
scaffold_16	starts_in_intron	289960	289960	+	asmbl_16808	none	blat.proc3829879.chain_3640	1	STRG.19012.1,STRG.19012.2,blat.proc3829879.chain_3638,blat.proc3829879.chain_3639	4
scaffold_14	spliced_intron	7298351	7298744	+	asmbl_12124,asmbl_12125,asmbl_12128	none	STRG.17153.1,STRG.17153.2,blat.proc3829879.chain_1853,blat.proc3829879.chain_1854,blat.proc3829879.chain_1855	5	STRG.17153.3,blat.proc3829879.chain_1852	2
scaffold_8	skipped_exon	13256225	13256725	+	asmbl_52343	none	STRG.10504.1,blat.proc3829875.chain_3008	2	STRG.10504.2,blat.proc3829875.chain_3009	2
scaffold_22	alternate_exon	9037267	9037833	-	asmbl_30276	none	STRG.25221.1	1	STRG.25221.2,Trinity_GG_31117_c0_g1_i1,blat.proc3829899.chain_2313	3
scaffold_6	starts_in_intron	12115545	12115545	+	asmbl_47311	none	STRG.7978.2	1	STRG.7978.1	1
scaffold_22	alt_donor	4240804	4240805	-	asmbl_29979,asmbl_29981	none	STRG.24838.2,Trinity_GG_30899_c1_g1_i5,blat.proc3829899.chain_1982	3	blat.proc3829899.chain_1980	1
scaffold_5	skipped_exon	5046593	5047832	+	asmbl_43991	none	STRG.5951.1,blat.proc3829873.chain_2107	2	STRG.5951.2	1
scaffold_6	retained_intron	7515546	7515851	-	asmbl_48432,asmbl_48433	none	STRG.7647.3,STRG.7647.4,Trinity_GG_21346_c0_g1_i3,blat.proc3829889.chain_3682	4	blat.proc3829889.chain_3683	1
scaffold_17	alt_acceptor	9567779	9567780	+	asmbl_18238,asmbl_18241	none	STRG.20564.1,Trinity_GG_11277_c0_g1_i1,Trinity_GG_11277_c0_g1_i3,blat.proc3829881.chain_1399,blat.proc3829881.chain_1401	5	Trinity_GG_11277_c0_g1_i2,blat.proc3829881.chain_1400	2
scaffold_3	starts_in_intron	17852879	17852879	+	asmbl_40670	none	blat.proc3829873.chain_403	1	blat.proc3829873.chain_404	1
scaffold_7	alt_acceptor	5240418	5240419	+	asmbl_50681	none	STRG.8853.2	1	STRG.8853.1,blat.proc3829875.chain_1292,blat.proc3829875.chain_1293,blat.proc3829875.chain_1294,blat.proc3829875.chain_1296	5
scaffold_2	spliced_intron	6766622	6768034	+	asmbl_24517,asmbl_24521	none	STRG.2035.1,Trinity_GG_1102_c0_g1_i1,Trinity_GG_1102_c0_g1_i2,blat.proc3829871.chain_2008,blat.proc3829871.chain_2011	5	Trinity_GG_1102_c0_g1_i11,Trinity_GG_1102_c0_g1_i5,Trinity_GG_1102_c0_g1_i7,Trinity_GG_1102_c0_g1_i8,blat.proc3829871.chain_2005,blat.proc3829871.chain_2009,blat.proc3829871.chain_2010,blat.proc3829871.chain_2012	8
scaffold_10	retained_exon	17325631	17325749	-	asmbl_3952	none	STRG.13169.1,blat.proc3829893.chain_1573	2	STRG.13169.2,blat.proc3829893.chain_1574	2
scaffold_6	retained_intron	14175901	14176174	-	asmbl_48926	none	blat.proc3829891.chain_508	1	STRG.8173.1,STRG.8173.2,blat.proc3829891.chain_509,blat.proc3829891.chain_510,blat.proc3829891.chain_511	5
scaffold_25	retained_exon	8698556	8698659	-	asmbl_34433	none	STRG.27678.2,blat.proc3829901.chain_954,blat.proc3829901.chain_957,blat.proc3829901.chain_960	4	STRG.27678.3,STRG.27678.5,blat.proc3829901.chain_953	3
scaffold_14	ends_in_intron	13220151	13220151	+	asmbl_12444	none	STRG.17599.4	1	STRG.17599.1,STRG.17599.2,STRG.17599.3,blat.proc3829879.chain_2266	4
scaffold_3	retained_exon	11778452	11778567	-	asmbl_39144	none	STRG.3606.2	1	STRG.3606.1,blat.proc3829887.chain_3381	2
scaffold_18	alt_donor	8864526	8864527	-	asmbl_20060,asmbl_20061,asmbl_20062,asmbl_20065,asmbl_20066,asmbl_20067,asmbl_20068	none	STRG.21541.1,STRG.21541.2,STRG.21541.3,blat.proc3829897.chain_2356,blat.proc3829897.chain_2357,blat.proc3829897.chain_2358,blat.proc3829897.chain_2359,blat.proc3829897.chain_2360,blat.proc3829897.chain_2362	9	Trinity_GG_29045_c0_g1_i17,blat.proc3829897.chain_2361	2
scaffold_5	retained_exon	19029500	19029511	-	asmbl_46267	none	blat.proc3829889.chain_3008	1	STRG.7018.3,STRG.7018.4,STRG.7018.5,blat.proc3829889.chain_3003,blat.proc3829889.chain_3006,blat.proc3829889.chain_3009	6
scaffold_15	skipped_exon	5741750	5743112	-	asmbl_15242	none	STRG.18248.2	1	STRG.18248.1,STRG.18248.3,STRG.18248.4	3
scaffold_11	alt_donor	7051035	7051036	+	asmbl_5610,asmbl_5611,asmbl_5612	none	STRG.13722.2,Trinity_GG_7553_c0_g1_i2,blat.proc3829877.chain_2198	3	STRG.13722.1,STRG.13722.3,Trinity_GG_7553_c0_g1_i3,Trinity_GG_7553_c0_g1_i8,blat.proc3829877.chain_2193,blat.proc3829877.chain_2196	6
scaffold_20	alt_donor	10057119	10057120	-	asmbl_27001	none	STRG.23535.2,blat.proc3829899.chain_545	2	STRG.23535.1,blat.proc3829899.chain_546	2
scaffold_8	retained_intron	6018616	6018729	-	asmbl_52850	none	Trinity_GG_22594_c0_g1_i1,blat.proc3829891.chain_2158	2	STRG.10005.2,Trinity_GG_22594_c0_g1_i2,blat.proc3829891.chain_2160	3
scaffold_1	skipped_exon	3497794	3498653	-	asmbl_147,asmbl_150,asmbl_156,asmbl_157	none	STRG.217.3,blat.proc3829887.chain_117,blat.proc3829887.chain_120,blat.proc3829887.chain_125	4	STRG.217.1,STRG.217.2,blat.proc3829887.chain_114,blat.proc3829887.chain_116,blat.proc3829887.chain_118,blat.proc3829887.chain_119,blat.proc3829887.chain_121,blat.proc3829887.chain_123,blat.proc3829887.chain_124	9
scaffold_25	alt_donor	7322768	7322769	-	asmbl_34371	none	blat.proc3829885.chain_601	1	STRG.27566.1,STRG.27566.2,STRG.27566.4	3
scaffold_15	alt_donor	1260832	1260833	+	asmbl_13937,asmbl_13939	none	STRG.17926.3,blat.proc3829879.chain_2602	2	STRG.17926.1,STRG.17926.2,Trinity_GG_9856_c0_g1_i1,blat.proc3829879.chain_2600,blat.proc3829879.chain_2601	5
scaffold_27	spliced_intron	7449983	7450375	+	asmbl_36409	none	blat.proc3829885.chain_2137	1	STRG.29084.1,Trinity_GG_16053_c1_g1_i2,blat.proc3829885.chain_2138	3
scaffold_4	starts_in_intron	16508138	16508138	-	asmbl_41936	none	blat.proc3829889.chain_1298	1	STRG.5230.1,blat.proc3829889.chain_1296,blat.proc3829889.chain_1297	3
scaffold_11	alt_acceptor	4715363	4715364	+	asmbl_5465,asmbl_5466	none	STRG.13545.2,STRG.13545.3	2	STRG.13545.1,blat.proc3829877.chain_2043	2
scaffold_1	skipped_exon	6299428	6299676	-	asmbl_359	none	STRG.424.4	1	STRG.424.2,STRG.424.5,blat.proc3829887.chain_306	3
scaffold_18	alt_donor	4849093	4849094	+	asmbl_20602	none	STRG.21267.2,Trinity_GG_11716_c0_g1_i2,blat.proc3829881.chain_2174	3	STRG.21267.3,Trinity_GG_11716_c0_g1_i6,blat.proc3829881.chain_2170	3
scaffold_5	alt_donor	6323968	6323969	+	asmbl_44084	none	STRG.6037.1	1	STRG.6037.3	1
scaffold_15	alternate_exon	6883099	6884395	-	asmbl_15275	none	STRG.18290.4,Trinity_GG_27246_c1_g1_i1,blat.proc3829895.chain_2943	3	STRG.18290.1,STRG.18290.5,STRG.18290.6,blat.proc3829895.chain_2937,blat.proc3829895.chain_2939,blat.proc3829895.chain_2942	6
scaffold_15	retained_exon	14633628	14633734	-	asmbl_15749,asmbl_15753	none	STRG.18867.1,STRG.18867.4,blat.proc3829895.chain_3645	3	STRG.18867.2,blat.proc3829895.chain_3644	2
scaffold_2	alternate_exon	2449785	2454813	-	asmbl_22919	none	STRG.1690.2,blat.proc3829887.chain_1528	2	blat.proc3829887.chain_1529	1
scaffold_8	alt_acceptor	9001466	9001467	+	asmbl_52031	none	STRG.10147.1,Trinity_GG_5624_c0_g1_i3,blat.proc3829875.chain_2618	3	STRG.10147.2,Trinity_GG_5624_c0_g1_i1,blat.proc3829875.chain_2616	3
scaffold_7	alt_donor	18394632	18394633	-	asmbl_50288,asmbl_50289,asmbl_50292,asmbl_50294,asmbl_50295,asmbl_50296,asmbl_50298,asmbl_50299	none	STRG.9659.1,STRG.9659.2,STRG.9659.3,STRG.9659.4,STRG.9659.5,Trinity_GG_22427_c0_g1_i10,Trinity_GG_22427_c0_g1_i11,blat.proc3829891.chain_1868,blat.proc3829891.chain_1869,blat.proc3829891.chain_1870,blat.proc3829891.chain_1871,blat.proc3829891.chain_1875	12	blat.proc3829891.chain_1873	1
scaffold_3	alternate_exon	17375634	17375710	+	asmbl_40633	none	STRG.3967.1,blat.proc3829873.chain_370	2	STRG.3967.2,Trinity_GG_2227_c0_g1_i1	2
scaffold_12	starts_in_intron	7406456	7406456	-	asmbl_7711	none	blat.proc3829893.chain_3203	1	STRG.14815.1,STRG.14815.2,STRG.14815.3,blat.proc3829893.chain_3204	4
scaffold_7	alt_acceptor	15247935	15247936	+	asmbl_51303,asmbl_51304	none	STRG.9529.1,blat.proc3829875.chain_2039,blat.proc3829875.chain_2040	3	STRG.9529.2,Trinity_GG_5316_c0_g1_i1,blat.proc3829875.chain_2037,blat.proc3829875.chain_2042,blat.proc3829875.chain_2043	5
scaffold_6	spliced_intron	18025101	18025221	-	asmbl_49159	none	STRG.8482.1,blat.proc3829891.chain_775	2	blat.proc3829891.chain_776	1
scaffold_6	ends_in_intron	18719607	18719607	-	asmbl_49201	none	Trinity_GG_21883_c1_g1_i1,blat.proc3829891.chain_858	2	STRG.8533.1	1
scaffold_4	starts_in_intron	9995980	9995980	+	asmbl_42972,asmbl_42975	none	STRG.4763.4,Trinity_GG_2650_c0_g1_i1,blat.proc3829873.chain_1114,blat.proc3829873.chain_1116	4	STRG.4763.1,STRG.4763.2,blat.proc3829873.chain_1112,blat.proc3829873.chain_1115	4
scaffold_6	spliced_intron	8164348	8164374	-	asmbl_48470	none	STRG.7689.1	1	STRG.7689.2	1
scaffold_27	starts_in_intron	7398500	7398500	-	asmbl_37058	none	blat.proc3829901.chain_2243	1	STRG.29074.2	1
scaffold_4	spliced_intron	18288544	18288639	+	asmbl_43433	none	STRG.5428.2	1	STRG.5428.1	1
scaffold_10	alternate_exon	17154678	17156518	-	asmbl_3937	none	STRG.13151.1,blat.proc3829893.chain_1644	2	blat.proc3829893.chain_1646	1
scaffold_10	alt_acceptor	6413092	6413093	-	asmbl_3369	none	blat.proc3829893.chain_850	1	STRG.12460.1	1
scaffold_11	skipped_exon	8308762	8310348	+	asmbl_5710	none	STRG.13834.1,blat.proc3829877.chain_2211	2	blat.proc3829877.chain_2212	1
scaffold_8	alt_acceptor	16386918	16386919	+	asmbl_52441,asmbl_52443	none	STRG.10611.3,Trinity_GG_5913_c0_g1_i2,Trinity_GG_5913_c0_g1_i5,blat.proc3829875.chain_3141,blat.proc3829875.chain_3145	5	STRG.10611.1,STRG.10611.2,Trinity_GG_5913_c0_g1_i3,Trinity_GG_5913_c0_g1_i4,blat.proc3829875.chain_3143,blat.proc3829875.chain_3144	6
scaffold_4	alt_acceptor	12568167	12568168	-	asmbl_41672	none	STRG.4894.2	1	STRG.4894.1,blat.proc3829889.chain_958	2
scaffold_12	alternate_exon	16316174	16316314	-	asmbl_8257,asmbl_8258	none	STRG.15369.1,blat.proc3829895.chain_112	2	blat.proc3829895.chain_113	1
scaffold_15	ends_in_intron	4982817	4982817	-	asmbl_15191,asmbl_15192	none	STRG.18197.5,blat.proc3829895.chain_2988	2	STRG.18197.1,STRG.18197.3,STRG.18197.4,blat.proc3829895.chain_2985,blat.proc3829895.chain_2986,blat.proc3829895.chain_2987	6
scaffold_4	alternate_exon	16873536	16874556	-	asmbl_41976,asmbl_41978	none	STRG.5279.1,blat.proc3829889.chain_1280,blat.proc3829889.chain_1282	3	STRG.5279.3,STRG.5279.4	2
scaffold_24	alt_donor	10267071	10267072	-	asmbl_33161	none	STRG.26960.2	1	STRG.26960.1,blat.proc3829901.chain_238	2
scaffold_28	skipped_exon	5390808	5391169	+	asmbl_38282	none	Trinity_GG_16450_c0_g1_i9,blat.proc3829885.chain_2787	2	STRG.29664.1,STRG.29664.2,Trinity_GG_16450_c0_g1_i2,blat.proc3829885.chain_2784	4
scaffold_17	alternate_exon	11037991	11038384	-	asmbl_19307,asmbl_19308	none	STRG.20653.5,STRG.20653.7,Trinity_GG_28603_c1_g1_i1,blat.proc3829897.chain_1558,blat.proc3829897.chain_1559,blat.proc3829897.chain_1563	6	STRG.20653.3,STRG.20653.6,blat.proc3829897.chain_1562	3
scaffold_15	starts_in_intron	9724046	9724046	+	asmbl_14348	none	Trinity_GG_10128_c0_g1_i1,blat.proc3829879.chain_3078	2	STRG.18476.1,blat.proc3829879.chain_3079,blat.proc3829879.chain_3080	3
scaffold_9	alt_acceptor	377021	377022	+	asmbl_53741	none	Trinity_GG_5971_c0_g1_i1	1	STRG.10766.1,blat.proc3829875.chain_3253	2
scaffold_26	alt_acceptor	2960706	2960707	-	asmbl_34735	none	STRG.27973.3,blat.proc3829901.chain_1234	2	STRG.27973.1,STRG.27973.2,STRG.27973.4,blat.proc3829901.chain_1232,blat.proc3829901.chain_1233,blat.proc3829901.chain_1235	6
scaffold_16	skipped_exon	3706316	3707156	+	asmbl_16937	none	STRG.19166.2	1	STRG.19166.1,blat.proc3829881.chain_35,blat.proc3829881.chain_36	3
scaffold_10	ends_in_intron	8341491	8341491	-	asmbl_3499	none	Trinity_GG_24052_c0_g1_i1,blat.proc3829893.chain_1097	2	STRG.12593.1,blat.proc3829893.chain_1096	2
scaffold_13	alt_acceptor	11441505	11441506	-	asmbl_10057	none	STRG.16288.2,blat.proc3829895.chain_1037	2	STRG.16288.1,blat.proc3829895.chain_1039	2
scaffold_8	alt_acceptor	6904348	6904349	+	asmbl_51958	none	STRG.10042.3	1	STRG.10042.1,STRG.10042.2,blat.proc3829875.chain_2536,blat.proc3829875.chain_2541	4
scaffold_8	starts_in_intron	7795241	7795241	+	asmbl_51983	none	Trinity_GG_5618_c0_g1_i1,blat.proc3829875.chain_2605	2	STRG.10076.1,Trinity_GG_5618_c0_g1_i2,blat.proc3829875.chain_2604	3
scaffold_825	alt_acceptor	3691	3692	+	asmbl_53670	none	STRG.30456.1	1	STRG.30456.2	1
scaffold_5	spliced_intron	10290152	10290283	-	asmbl_45717	none	STRG.6316.1,blat.proc3829889.chain_2329	2	blat.proc3829889.chain_2328	1
scaffold_7	retained_intron	5928121	5929865	+	asmbl_50713	none	STRG.8891.1,Trinity_GG_4833_c0_g1_i4,blat.proc3829875.chain_1204	3	Trinity_GG_4833_c0_g1_i1,blat.proc3829875.chain_1203	2
scaffold_13	alt_donor	8749188	8749189	+	asmbl_11132	none	STRG.16134.1,blat.proc3829879.chain_836	2	STRG.16134.2,blat.proc3829879.chain_837	2
scaffold_27	alt_donor	4938754	4938755	+	asmbl_36282,asmbl_36283	none	STRG.28914.1,STRG.28914.2,blat.proc3829885.chain_2065	3	STRG.28914.6	1
scaffold_15	retained_intron	12434240	12434471	+	asmbl_14508,asmbl_14510,asmbl_14511,asmbl_14512	none	blat.proc3829879.chain_3278,blat.proc3829879.chain_3280,blat.proc3829879.chain_3282,blat.proc3829879.chain_3286	4	STRG.18688.1	1
scaffold_23	starts_in_intron	4316239	4316239	+	asmbl_30802	none	blat.proc3829883.chain_2717	1	STRG.25826.1,blat.proc3829883.chain_2710,blat.proc3829883.chain_2716,blat.proc3829883.chain_2718	4
scaffold_17	alt_acceptor	539180	539181	+	asmbl_17669,asmbl_17676	none	STRG.19892.2,blat.proc3829881.chain_742,blat.proc3829881.chain_743	3	STRG.19892.1,STRG.19892.4	2
scaffold_15	retained_intron	181512	182202	+	asmbl_13892	none	STRG.17862.1,Trinity_GG_9834_c2_g1_i1,blat.proc3829879.chain_2563	3	STRG.17862.2,blat.proc3829879.chain_2564	2
scaffold_14	skipped_exon	9271820	9273885	-	asmbl_13344	none	STRG.17323.3	1	STRG.17323.1,STRG.17323.2,STRG.17323.4,blat.proc3829895.chain_1994,blat.proc3829895.chain_1995,blat.proc3829895.chain_1996,blat.proc3829895.chain_1997,blat.proc3829895.chain_1999	8
scaffold_18	starts_in_intron	9789168	9789168	+	asmbl_20916,asmbl_20918	none	STRG.21576.2,STRG.21576.3	2	STRG.21576.1	1
scaffold_20	alternate_exon	7823193	7824134	-	asmbl_26850	none	STRG.23319.1,blat.proc3829899.chain_343	2	blat.proc3829899.chain_346	1
scaffold_1	ends_in_intron	13537642	13537642	-	asmbl_827	none	Trinity_GG_17468_c0_g1_i4,blat.proc3829887.chain_776	2	STRG.966.1,Trinity_GG_17468_c0_g1_i1,Trinity_GG_17468_c0_g1_i5,blat.proc3829887.chain_771,blat.proc3829887.chain_772,blat.proc3829887.chain_773,blat.proc3829887.chain_774,blat.proc3829887.chain_775	8
scaffold_14	retained_exon	14536527	14536584	-	asmbl_13674	none	STRG.17699.4	1	STRG.17699.1,STRG.17699.3	2
scaffold_4	starts_in_intron	8854493	8854493	+	asmbl_42923	none	blat.proc3829873.chain_1076	1	STRG.4700.1,blat.proc3829873.chain_1077	2
scaffold_15	starts_in_intron	15111382	15111382	+	asmbl_14662	none	Trinity_GG_10356_c0_g1_i1,blat.proc3829879.chain_3466	2	STRG.18893.1,blat.proc3829879.chain_3467	2
scaffold_19	ends_in_intron	678601	678601	+	asmbl_22001	none	blat.proc3829881.chain_2827	1	STRG.21838.1,blat.proc3829881.chain_2823,blat.proc3829881.chain_2826	3
scaffold_16	alternate_exon	6117775	6118441	+	asmbl_17060	none	blat.proc3829881.chain_187	1	STRG.19331.2	1
scaffold_15	spliced_intron	15355010	15355115	+	asmbl_14708,asmbl_14710,asmbl_14712	none	STRG.18909.3,Trinity_GG_10368_c0_g1_i7,blat.proc3829879.chain_3500,blat.proc3829879.chain_3505	4	STRG.18909.1,Trinity_GG_10368_c0_g1_i4,Trinity_GG_10368_c0_g1_i9,blat.proc3829879.chain_3501,blat.proc3829879.chain_3502,blat.proc3829879.chain_3503	6
scaffold_18	alternate_exon	13436618	13438672	+	asmbl_21037	none	STRG.21775.1	1	STRG.21775.2,Trinity_GG_12046_c2_g1_i1,blat.proc3829881.chain_2740	3
scaffold_11	retained_exon	7924530	7924768	+	asmbl_5663	none	STRG.13793.3,Trinity_GG_7594_c0_g1_i4,blat.proc3829877.chain_2266	3	STRG.13793.1,Trinity_GG_7594_c0_g1_i3,blat.proc3829877.chain_2265	3
scaffold_13	alt_acceptor	520154	520155	+	asmbl_10454	none	STRG.15434.3,Trinity_GG_8491_c0_g1_i1,blat.proc3829879.chain_110	3	STRG.15434.5,blat.proc3829879.chain_116	2
scaffold_27	retained_intron	638419	638515	-	asmbl_36660	none	Trinity_GG_32989_c1_g1_i3,blat.proc3829901.chain_1760	2	STRG.28565.1,Trinity_GG_32989_c1_g1_i6,blat.proc3829901.chain_1761	3
scaffold_3	alt_acceptor	18141544	18141545	-	asmbl_39540,asmbl_39541	none	STRG.4027.1,STRG.4027.2	2	STRG.4027.3,blat.proc3829889.chain_98,blat.proc3829889.chain_99	3
scaffold_4	retained_exon	7150796	7151103	+	asmbl_42803	none	STRG.4558.3,blat.proc3829873.chain_882	2	STRG.4558.1,STRG.4558.5	2
scaffold_4	alt_acceptor	13607674	13607675	+	asmbl_43141	none	STRG.4987.1,Trinity_GG_2769_c0_g1_i1,blat.proc3829873.chain_1303	3	STRG.4987.2	1
scaffold_4	starts_in_intron	3297452	3297452	+	asmbl_42498,asmbl_42499	none	blat.proc3829873.chain_608,blat.proc3829873.chain_609	2	STRG.4256.1,blat.proc3829873.chain_607	2
scaffold_8	starts_in_intron	8174919	8174919	+	asmbl_51991	none	STRG.10093.4	1	STRG.10093.1,STRG.10093.2,STRG.10093.3	3
scaffold_4	ends_in_intron	4910587	4910587	+	asmbl_42643	none	blat.proc3829873.chain_778	1	STRG.4386.1,STRG.4386.2,STRG.4386.3,blat.proc3829873.chain_780	4
scaffold_5	alternate_exon	8134726	8135151	+	asmbl_44195	none	STRG.6171.2,blat.proc3829873.chain_2332	2	STRG.6171.3,blat.proc3829873.chain_2333	2
scaffold_8	starts_in_intron	4750316	4750316	-	asmbl_52783	none	Trinity_GG_22552_c0_g1_i3,blat.proc3829891.chain_2087	2	STRG.9924.1,Trinity_GG_22552_c0_g1_i1,Trinity_GG_22552_c0_g1_i2,blat.proc3829891.chain_2085,blat.proc3829891.chain_2086	5
scaffold_1	alt_donor	6907173	6907174	-	asmbl_411	none	STRG.484.1,blat.proc3829887.chain_399	2	blat.proc3829887.chain_398	1
scaffold_3	starts_in_intron	13462730	13462730	+	asmbl_40401	none	blat.proc3829873.chain_33	1	STRG.3701.1,blat.proc3829873.chain_31	2
scaffold_2	alternate_exon	5112209	5112712	-	asmbl_23156	none	Trinity_GG_18072_c1_g1_i1,blat.proc3829887.chain_1755	2	STRG.1926.1,Trinity_GG_18072_c1_g1_i2,blat.proc3829887.chain_1754	3
scaffold_9	alt_acceptor	4953014	4953015	-	asmbl_54943	none	STRG.11061.3,Trinity_GG_23150_c0_g1_i3	2	STRG.11061.1,blat.proc3829891.chain_3213	2
scaffold_3	spliced_intron	18346773	18346852	-	asmbl_39560	none	STRG.4038.1,blat.proc3829889.chain_77	2	blat.proc3829873.chain_417	1
scaffold_15	alternate_exon	2447241	2447366	+	asmbl_13996	none	STRG.18013.2	1	STRG.18013.5	1
scaffold_4	alt_acceptor	8182973	8182974	-	asmbl_41496	none	STRG.4637.2,blat.proc3829889.chain_708	2	STRG.4637.1,blat.proc3829889.chain_707	2
scaffold_13	skipped_exon	7504347	7506710	-	asmbl_9844	none	Trinity_GG_26030_c0_g1_i10,blat.proc3829895.chain_816	2	STRG.16034.1,STRG.16034.2,STRG.16034.5,Trinity_GG_26030_c0_g1_i9,blat.proc3829895.chain_813,blat.proc3829895.chain_820,blat.proc3829895.chain_822	7
scaffold_18	starts_in_intron	854901	854901	-	asmbl_19640	none	blat.proc3829897.chain_1915	1	STRG.21004.1,blat.proc3829897.chain_1918	2
scaffold_17	alt_acceptor	9034620	9034621	-	asmbl_19188,asmbl_19190,asmbl_19191	none	STRG.20520.3,STRG.20520.5,STRG.20520.6	3	STRG.20520.1,STRG.20520.4	2
scaffold_8	alt_acceptor	12906334	12906335	-	asmbl_53251	none	STRG.10471.3	1	STRG.10471.1,STRG.10471.2,blat.proc3829891.chain_2566	3
scaffold_1	alternate_exon	15101324	15101421	+	asmbl_2400	none	STRG.1075.2,blat.proc3829871.chain_1146	2	STRG.1075.1,blat.proc3829871.chain_1147	2
scaffold_1	starts_in_intron	8761614	8761614	-	asmbl_503	none	blat.proc3829887.chain_486	1	STRG.579.1,STRG.579.2,blat.proc3829887.chain_485	3
scaffold_8	spliced_intron	16384026	16384136	+	asmbl_52438	none	STRG.10610.1,Trinity_GG_5895_c0_g1_i1,blat.proc3829875.chain_3104	3	STRG.10610.2	1
scaffold_24	alt_donor	1064378	1064379	+	asmbl_32072	none	STRG.26360.2,Trinity_GG_14583_c0_g1_i2,blat.proc3829883.chain_3293	3	STRG.26360.4,blat.proc3829883.chain_3295	2
scaffold_23	alt_donor	8206067	8206068	+	asmbl_31064,asmbl_31065	none	STRG.26112.2,blat.proc3829883.chain_2938	2	STRG.26112.1,blat.proc3829883.chain_2936,blat.proc3829883.chain_2937	3
scaffold_26	spliced_intron	2253736	2255266	+	asmbl_35265,asmbl_35269	none	STRG.27939.1,STRG.27939.2,blat.proc3829885.chain_934	3	blat.proc3829885.chain_935	1
scaffold_5	spliced_intron	15764229	15764723	+	asmbl_44677,asmbl_44680,asmbl_44681,asmbl_44682	none	STRG.6763.1,blat.proc3829873.chain_2874,blat.proc3829873.chain_2875,blat.proc3829873.chain_2877,blat.proc3829873.chain_2880	5	blat.proc3829873.chain_2882	1
scaffold_6	alt_donor	168421	168422	-	asmbl_47970	none	STRG.7070.2	1	STRG.7070.1	1
scaffold_2	alt_acceptor	167609	167610	+	asmbl_24095,asmbl_24096	none	STRG.1523.1,blat.proc3829871.chain_1595,blat.proc3829871.chain_1597	3	STRG.1523.2,blat.proc3829871.chain_1599	2
scaffold_14	retained_exon	15585637	15585898	+	asmbl_12611	none	STRG.17785.3	1	STRG.17785.1,STRG.17785.2	2
scaffold_24	starts_in_intron	4374422	4374422	+	asmbl_32211,asmbl_32212	none	STRG.26580.2,blat.proc3829883.chain_3478	2	STRG.26580.1	1
scaffold_1	alt_acceptor	19045903	19045904	+	asmbl_2569	none	STRG.1337.4	1	STRG.1337.2,STRG.1337.3,blat.proc3829871.chain_1392,blat.proc3829871.chain_1393	4
scaffold_10	alt_acceptor	9004228	9004229	+	asmbl_4630	none	STRG.12637.3	1	STRG.12637.1,STRG.12637.2,STRG.12637.4,blat.proc3829877.chain_1127	4
scaffold_18	alt_acceptor	13656393	13656394	-	asmbl_20212	none	STRG.21789.2	1	STRG.21789.1,STRG.21789.3	2
scaffold_28	alt_acceptor	3216636	3216637	-	asmbl_37465	none	STRG.29513.1,blat.proc3829901.chain_2617	2	STRG.29513.2,blat.proc3829901.chain_2616	2
scaffold_5	alt_acceptor	7890846	7890847	+	asmbl_44181	none	STRG.6159.1,blat.proc3829873.chain_2313	2	STRG.6159.2	1
scaffold_13	alt_donor	9536299	9536300	-	asmbl_9990,asmbl_9992	none	STRG.16202.3,STRG.16202.5,blat.proc3829895.chain_991	3	STRG.16202.4	1
scaffold_23	retained_intron	10990921	10990994	-	asmbl_31900	none	blat.proc3829899.chain_3315	1	STRG.26288.1,blat.proc3829899.chain_3317	2
scaffold_2	alt_donor	14193808	14193809	-	asmbl_23582,asmbl_23583,asmbl_23584,asmbl_23585	none	blat.proc3829887.chain_2207,blat.proc3829887.chain_2208,blat.proc3829887.chain_2209,blat.proc3829887.chain_2210	4	STRG.2417.2	1
scaffold_20	alternate_exon	7070237	7070384	-	asmbl_26788	none	STRG.23262.2,blat.proc3829899.chain_257	2	STRG.23262.1,blat.proc3829899.chain_258	2
scaffold_7	spliced_intron	7789092	7789283	-	asmbl_49790,asmbl_49791	none	STRG.9024.1,STRG.9024.2,Trinity_GG_22117_c0_g1_i4,Trinity_GG_22117_c0_g1_i7,blat.proc3829891.chain_1294,blat.proc3829891.chain_1295	6	Trinity_GG_22117_c0_g1_i2,Trinity_GG_22117_c0_g1_i5,Trinity_GG_22117_c0_g1_i8,blat.proc3829891.chain_1293,blat.proc3829891.chain_1296,blat.proc3829891.chain_1297	6
scaffold_2	alternate_exon	13445148	13445746	-	asmbl_23533	none	blat.proc3829887.chain_2217	1	blat.proc3829887.chain_2213	1
scaffold_20	alt_acceptor	7797218	7797219	-	asmbl_26840	none	STRG.23311.1	1	STRG.23311.2	1
scaffold_12	alt_donor	5636447	5636448	-	asmbl_7646,asmbl_7647	none	STRG.14701.2,blat.proc3829893.chain_3064	2	STRG.14701.1,blat.proc3829893.chain_3066	2
scaffold_24	starts_in_intron	6075079	6075079	+	asmbl_32289	none	STRG.26647.3,blat.proc3829883.chain_3492	2	STRG.26647.1,STRG.26647.2,blat.proc3829883.chain_3493,blat.proc3829883.chain_3494	4
scaffold_15	retained_intron	15857572	15857984	+	asmbl_14778,asmbl_14779	none	Trinity_GG_10383_c0_g1_i2,blat.proc3829879.chain_3541,blat.proc3829879.chain_3545	3	STRG.18964.1,STRG.18964.3,STRG.18964.4,STRG.18964.5,STRG.18964.6,Trinity_GG_10383_c0_g1_i3,Trinity_GG_10383_c0_g1_i7,blat.proc3829879.chain_3538,blat.proc3829879.chain_3539,blat.proc3829879.chain_3540,blat.proc3829879.chain_3542	11
scaffold_5	retained_intron	6576837	6576949	-	asmbl_45486	none	Trinity_GG_20422_c0_g1_i6,blat.proc3829889.chain_2148	2	STRG.6049.1,STRG.6049.2,blat.proc3829889.chain_2145,blat.proc3829889.chain_2147	4
scaffold_10	ends_in_intron	1710064	1710064	-	asmbl_2993	none	Trinity_GG_23646_c0_g1_i1	1	STRG.12021.1,STRG.12021.2	2
scaffold_7	alt_acceptor	15247393	15247394	+	asmbl_51300,asmbl_51301,asmbl_51302	none	STRG.9529.2,STRG.9529.3,Trinity_GG_5316_c0_g1_i1,blat.proc3829875.chain_2037,blat.proc3829875.chain_2038,blat.proc3829875.chain_2042,blat.proc3829875.chain_2043	7	STRG.9529.1,blat.proc3829875.chain_2039,blat.proc3829875.chain_2040,blat.proc3829875.chain_2041	4
scaffold_14	alternate_exon	13210899	13210996	+	asmbl_12442	none	STRG.17599.1	1	STRG.17599.2,STRG.17599.3,STRG.17599.4	3
scaffold_28	spliced_intron	106950	107373	-	asmbl_37214,asmbl_37217	none	STRG.29229.1,STRG.29229.2,blat.proc3829901.chain_2342	3	blat.proc3829901.chain_2341,blat.proc3829901.chain_2343	2
scaffold_12	spliced_intron	110425	111191	-	asmbl_7411	none	STRG.14410.1,blat.proc3829893.chain_2827	2	STRG.14410.2,blat.proc3829893.chain_2828	2
scaffold_11	ends_in_intron	11940109	11940109	-	asmbl_7024	none	Trinity_GG_24916_c10_g1_i1,blat.proc3829893.chain_2573	2	STRG.14160.1,STRG.14160.2,STRG.14160.3,STRG.14160.4,STRG.14160.5	5
scaffold_18	ends_in_intron	348607	348607	+	asmbl_20318	none	STRG.20974.1,blat.proc3829881.chain_1825	2	STRG.20974.2,blat.proc3829881.chain_1827	2
scaffold_9	spliced_intron	6396897	6397036	-	asmbl_55015	none	STRG.11162.1,blat.proc3829891.chain_3250	2	blat.proc3829891.chain_3251	1
scaffold_28	spliced_intron	5233036	5233314	-	asmbl_37588,asmbl_37589,asmbl_37592,asmbl_37593	none	STRG.29652.1,STRG.29652.2,blat.proc3829901.chain_2678,blat.proc3829901.chain_2680,blat.proc3829901.chain_2685,blat.proc3829901.chain_2687	6	blat.proc3829901.chain_2683,blat.proc3829901.chain_2684	2
scaffold_2	alt_donor	8855625	8855626	+	asmbl_24679	none	STRG.2138.1,Trinity_GG_1207_c0_g1_i1,blat.proc3829871.chain_2246	3	STRG.2138.2,Trinity_GG_1207_c0_g1_i2,blat.proc3829871.chain_2245	3
scaffold_5	alternate_exon	5047196	5047570	+	asmbl_43993,asmbl_43995	none	blat.proc3829873.chain_2109	1	STRG.5951.1,blat.proc3829873.chain_2107	2
scaffold_1	alt_acceptor	5967854	5967855	-	asmbl_313	none	STRG.397.2,blat.proc3829887.chain_275	2	STRG.397.1,blat.proc3829887.chain_276	2
scaffold_25	alt_acceptor	7921248	7921249	-	asmbl_34389	none	STRG.27602.1	1	STRG.27602.2	1
scaffold_2	alt_acceptor	6752493	6752494	-	asmbl_23255	none	STRG.2029.2,blat.proc3829887.chain_1923	2	STRG.2029.1,Trinity_GG_18143_c0_g1_i1,blat.proc3829887.chain_1922,blat.proc3829887.chain_1924	4
scaffold_15	starts_in_intron	3006628	3006628	+	asmbl_14030	none	Trinity_GG_9921_c0_g1_i1,blat.proc3829879.chain_2710	2	STRG.18073.1,blat.proc3829879.chain_2709	2
scaffold_1	alt_donor	907586	907587	-	asmbl_33	none	STRG.45.1	1	STRG.45.3	1
scaffold_18	starts_in_intron	5563760	5563760	-	asmbl_19891	none	blat.proc3829897.chain_2184	1	STRG.21297.1,STRG.21297.2,Trinity_GG_28951_c1_g1_i5,Trinity_GG_28951_c1_g1_i6,blat.proc3829897.chain_2181,blat.proc3829897.chain_2185	6
scaffold_2	alt_donor	2790468	2790469	-	asmbl_22943,asmbl_22944	none	STRG.1724.2,blat.proc3829887.chain_1558	2	STRG.1724.1,blat.proc3829887.chain_1561	2
scaffold_2	ends_in_intron	18951626	18951626	+	asmbl_25286	none	Trinity_GG_1522_c0_g1_i1,Trinity_GG_1522_c0_g1_i7	2	Trinity_GG_1522_c0_g1_i11,Trinity_GG_1522_c0_g1_i6,blat.proc3829871.chain_2879	3
scaffold_4	ends_in_intron	4912608	4912608	+	asmbl_42644,asmbl_42646	none	blat.proc3829873.chain_777,blat.proc3829873.chain_779	2	STRG.4386.2	1
scaffold_8	retained_intron	9104039	9104256	-	asmbl_52992	none	blat.proc3829891.chain_2324	1	STRG.10156.1,blat.proc3829891.chain_2323	2
scaffold_6	alternate_exon	2481614	2481735	-	asmbl_48080	none	blat.proc3829889.chain_3223	1	STRG.7236.1,STRG.7236.3,blat.proc3829889.chain_3220	3
scaffold_2	alt_donor	690765	690766	+	asmbl_24115	none	STRG.1553.2	1	STRG.1553.4	1
scaffold_19	starts_in_intron	13284499	13284499	-	asmbl_21859	none	Trinity_GG_29628_c0_g1_i3,blat.proc3829897.chain_3428	2	STRG.22637.1,blat.proc3829897.chain_3429	2
scaffold_3	alt_acceptor	5003810	5003811	+	asmbl_40015,asmbl_40019	none	STRG.3199.2,STRG.3199.3	2	STRG.3199.1	1
scaffold_19	alternate_exon	4865464	4865507	+	asmbl_22144	none	STRG.22053.3,blat.proc3829881.chain_2973	2	STRG.22053.1	1
scaffold_21	starts_in_intron	2400197	2400197	+	asmbl_28402	none	Trinity_GG_13188_c0_g1_i1,blat.proc3829883.chain_949	2	STRG.23846.1,Trinity_GG_13188_c0_g1_i3,Trinity_GG_13188_c0_g1_i4,blat.proc3829883.chain_951,blat.proc3829883.chain_953	5
scaffold_11	ends_in_intron	14499025	14499025	-	asmbl_7147	none	STRG.14235.2,blat.proc3829893.chain_2589	2	STRG.14235.1,blat.proc3829893.chain_2590	2
scaffold_9	starts_in_intron	9663322	9663322	-	asmbl_55196	none	blat.proc3829891.chain_3507	1	STRG.11333.1,blat.proc3829891.chain_3505,blat.proc3829891.chain_3506	3
scaffold_26	starts_in_intron	9842320	9842320	-	asmbl_35067,asmbl_35068	none	Trinity_GG_32930_c0_g1_i2,blat.proc3829901.chain_1620,blat.proc3829901.chain_1621	3	Trinity_GG_32930_c0_g1_i1,blat.proc3829901.chain_1622	2
scaffold_26	alternate_exon	9039928	9039989	-	asmbl_35030	none	STRG.28450.1,blat.proc3829901.chain_1587	2	STRG.28450.2	1
scaffold_1	ends_in_intron	5430587	5430587	-	asmbl_267	none	blat.proc3829887.chain_222	1	STRG.338.1	1
scaffold_11	alt_acceptor	5125243	5125244	-	asmbl_6630	none	STRG.13592.2,blat.proc3829893.chain_2049	2	STRG.13592.1,blat.proc3829893.chain_2050	2
scaffold_2	alt_donor	15455112	15455113	+	asmbl_25068,asmbl_25070	none	STRG.2500.2,blat.proc3829871.chain_2684	2	STRG.2500.1,blat.proc3829871.chain_2679,blat.proc3829871.chain_2680,blat.proc3829871.chain_2681,blat.proc3829871.chain_2682,blat.proc3829871.chain_2683,blat.proc3829871.chain_2685	7
scaffold_1	retained_intron	6019056	6019228	+	asmbl_1810	none	blat.proc3829871.chain_485	1	STRG.406.1,blat.proc3829871.chain_484,blat.proc3829871.chain_486	3
scaffold_22	spliced_intron	11343600	11343820	-	asmbl_30434	none	STRG.25449.2,blat.proc3829899.chain_2553	2	Trinity_GG_31247_c0_g1_i1,blat.proc3829899.chain_2551	2
scaffold_24	alt_acceptor	10269520	10269521	+	asmbl_32552	none	STRG.26966.2,Trinity_GG_14851_c0_g1_i1,blat.proc3829885.chain_1	3	STRG.26966.1,Trinity_GG_14851_c0_g1_i2,blat.proc3829883.chain_3750	3
scaffold_1	alternate_exon	45447	45834	-	asmbl_6,asmbl_7	none	blat.proc3829885.chain_3729,blat.proc3829885.chain_3731	2	STRG.19.1,blat.proc3829885.chain_3732	2
scaffold_15	alt_donor	9600473	9600474	+	asmbl_14338	none	STRG.18465.1,blat.proc3829879.chain_3034	2	STRG.18465.2,blat.proc3829879.chain_3035	2
scaffold_22	starts_in_intron	290585	290585	+	asmbl_29124	none	Trinity_GG_13626_c0_g1_i2,blat.proc3829883.chain_1695	2	STRG.24663.1,blat.proc3829883.chain_1696	2
scaffold_1	starts_in_intron	3522678	3522678	-	asmbl_164	none	Trinity_GG_17129_c0_g1_i2	1	STRG.213.2,STRG.213.4	2
scaffold_5	starts_in_intron	13891862	13891862	-	asmbl_45960	none	blat.proc3829889.chain_2679	1	STRG.6594.1,blat.proc3829889.chain_2680	2
scaffold_16	alternate_exon	11432524	11432568	-	asmbl_16527	none	STRG.19659.2	1	STRG.19659.1,blat.proc3829897.chain_634	2
scaffold_17	alt_donor	8421766	8421767	+	asmbl_18118	none	STRG.20451.2,Trinity_GG_11215_c0_g1_i2,blat.proc3829881.chain_1262	3	STRG.20451.1,Trinity_GG_11215_c0_g1_i1,blat.proc3829881.chain_1261	3
scaffold_17	retained_intron	5137331	5138143	-	asmbl_18963,asmbl_18964	none	STRG.20232.4,blat.proc3829897.chain_1208	2	STRG.20232.2,blat.proc3829897.chain_1206	2
scaffold_16	alt_acceptor	3571338	3571339	-	asmbl_16157,asmbl_16158	none	STRG.19160.1,STRG.19160.2,Trinity_GG_27773_c0_g1_i6,Trinity_GG_27773_c0_g1_i8,blat.proc3829897.chain_190,blat.proc3829897.chain_192	6	STRG.19160.3	1
scaffold_11	starts_in_intron	15833132	15833132	+	asmbl_6114,asmbl_6115	none	STRG.14312.2,STRG.14312.3	2	STRG.14312.1,blat.proc3829877.chain_2734,blat.proc3829877.chain_2735	3
scaffold_5	spliced_intron	6584076	6584215	-	asmbl_45492,asmbl_45493	none	blat.proc3829889.chain_2135,blat.proc3829889.chain_2136	2	blat.proc3829889.chain_2132	1
scaffold_22	spliced_intron	736233	736408	-	asmbl_29887	none	STRG.24712.2,blat.proc3829899.chain_1773	2	STRG.24712.1,blat.proc3829899.chain_1774	2
scaffold_3	spliced_intron	10929425	10929727	+	asmbl_40272	none	STRG.3529.1,blat.proc3829871.chain_3710	2	Trinity_GG_1999_c0_g1_i2,blat.proc3829871.chain_3711	2
scaffold_2	alt_acceptor	11795680	11795681	+	asmbl_24809	none	blat.proc3829871.chain_2370	1	STRG.2277.1,Trinity_GG_1273_c0_g1_i1,blat.proc3829871.chain_2369	3
scaffold_6	retained_intron	13919016	13919128	-	asmbl_48895,asmbl_48898	none	STRG.8132.1,blat.proc3829891.chain_439,blat.proc3829891.chain_440	3	STRG.8132.2,blat.proc3829891.chain_438	2
scaffold_2	spliced_intron	883173	884738	+	asmbl_24142,asmbl_24143	none	blat.proc3829871.chain_1566,blat.proc3829871.chain_1567	2	STRG.1563.2	1
scaffold_25	alt_acceptor	6083062	6083063	+	asmbl_33591	none	STRG.27473.1,Trinity_GG_15140_c0_g1_i1,blat.proc3829885.chain_498	3	STRG.27473.2	1
scaffold_1	retained_intron	10414454	10414991	-	asmbl_594	none	Trinity_GG_17393_c0_g2_i1,blat.proc3829887.chain_610	2	STRG.680.4	1
scaffold_7	alt_donor	12053972	12053973	+	asmbl_51084	none	STRG.9298.1,blat.proc3829875.chain_1756	2	STRG.9298.2,Trinity_GG_5159_c0_g1_i4,blat.proc3829875.chain_1757	3
scaffold_19	alt_donor	96600	96601	-	asmbl_21186	none	STRG.21815.1,Trinity_GG_29184_c0_g1_i2,blat.proc3829897.chain_2589	3	STRG.21815.2,Trinity_GG_29184_c0_g1_i1,blat.proc3829897.chain_2590	3
scaffold_5	skipped_exon	6064631	6065158	+	asmbl_44062	none	STRG.6021.2	1	STRG.6021.1,STRG.6021.3,blat.proc3829873.chain_2216,blat.proc3829873.chain_2217	4
scaffold_1	retained_intron	18033269	18033608	-	asmbl_1077,asmbl_1078	none	Trinity_GG_17699_c0_g1_i2,Trinity_GG_17699_c0_g1_i5,blat.proc3829887.chain_1166,blat.proc3829887.chain_1167	4	STRG.1267.1,Trinity_GG_17699_c0_g1_i1,blat.proc3829887.chain_1168	3
scaffold_21	starts_in_intron	400093	400093	-	asmbl_27335	none	Trinity_GG_30225_c0_g1_i2,blat.proc3829899.chain_758	2	STRG.23724.1,STRG.23724.2,Trinity_GG_30225_c0_g1_i3,Trinity_GG_30225_c0_g1_i7,blat.proc3829899.chain_754,blat.proc3829899.chain_755	6
scaffold_9	skipped_exon	16708338	16709158	-	asmbl_55581	none	blat.proc3829893.chain_198	1	STRG.11809.1,STRG.11809.2,blat.proc3829893.chain_199	3
scaffold_4	alt_acceptor	3269998	3269999	+	asmbl_42487,asmbl_42488,asmbl_42489	none	STRG.4252.1,blat.proc3829873.chain_514,blat.proc3829873.chain_515,blat.proc3829873.chain_516	4	STRG.4252.2,blat.proc3829873.chain_517	2
scaffold_2	skipped_exon	8191219	8193191	+	asmbl_24651	none	STRG.2108.2,blat.proc3829871.chain_2098	2	STRG.2108.1,blat.proc3829871.chain_2099	2
scaffold_19	spliced_intron	12207921	12208221	+	asmbl_22570,asmbl_22571	none	STRG.22538.3,Trinity_GG_12469_c0_g1_i5,blat.proc3829881.chain_3484	3	STRG.22538.2,Trinity_GG_12469_c0_g1_i2,Trinity_GG_12469_c0_g1_i3,blat.proc3829881.chain_3483,blat.proc3829881.chain_3485	5
scaffold_9	alternate_exon	3674740	3675045	-	asmbl_54886	none	Trinity_GG_23073_c0_g2_i1,blat.proc3829891.chain_3086	2	STRG.10971.1,STRG.10971.3,blat.proc3829891.chain_3074,blat.proc3829891.chain_3084,blat.proc3829891.chain_3085	5
scaffold_15	alt_acceptor	6961828	6961829	+	asmbl_14213	none	STRG.18295.2	1	STRG.18295.1	1
scaffold_12	alternate_exon	2661590	2663777	+	asmbl_8467,asmbl_8468	none	STRG.14495.1,STRG.14495.3,Trinity_GG_7992_c1_g1_i1,blat.proc3829877.chain_2969,blat.proc3829877.chain_2970,blat.proc3829877.chain_2973	6	blat.proc3829877.chain_2968	1
scaffold_3	alternate_exon	3097071	3097149	-	asmbl_38710	none	STRG.3062.2,blat.proc3829887.chain_2823	2	STRG.3062.1,blat.proc3829887.chain_2824	2
scaffold_6	starts_in_intron	14261368	14261368	-	asmbl_48937	none	blat.proc3829891.chain_513	1	STRG.8187.1,blat.proc3829891.chain_512	2
scaffold_16	alternate_exon	15218040	15221342	+	asmbl_17522,asmbl_17524	none	STRG.19866.1,STRG.19866.2,blat.proc3829881.chain_657	3	STRG.19866.3	1
scaffold_2	spliced_intron	7240923	7241276	+	asmbl_24584,asmbl_24586,asmbl_24587,asmbl_24588,asmbl_24590,asmbl_24591	none	STRG.2061.1,blat.proc3829871.chain_2165,blat.proc3829871.chain_2166,blat.proc3829871.chain_2168,blat.proc3829871.chain_2170,blat.proc3829871.chain_2171,blat.proc3829871.chain_2172	7	blat.proc3829871.chain_2164,blat.proc3829871.chain_2169	2
scaffold_12	spliced_intron	14989527	14989688	-	asmbl_8155	none	STRG.15282.3,Trinity_GG_25571_c0_g1_i3,blat.proc3829893.chain_3740	3	Trinity_GG_25571_c0_g1_i5,blat.proc3829893.chain_3741	2
scaffold_23	ends_in_intron	2995537	2995537	-	asmbl_31494,asmbl_31495	none	STRG.25729.4,STRG.25729.5	2	STRG.25729.1,blat.proc3829899.chain_2872	2
scaffold_4	starts_in_intron	16874080	16874080	-	asmbl_41977	none	Trinity_GG_19940_c0_g2_i1,blat.proc3829889.chain_1283	2	STRG.5279.1,STRG.5279.2,blat.proc3829889.chain_1280,blat.proc3829889.chain_1282	4
scaffold_10	retained_intron	3928652	3928827	-	asmbl_3156	none	STRG.12230.2	1	STRG.12230.3,STRG.12230.5,blat.proc3829893.chain_691	3
scaffold_12	spliced_intron	16182802	16183019	-	asmbl_8244,asmbl_8245	none	STRG.15358.1,STRG.15358.3,Trinity_GG_25619_c0_g1_i1,Trinity_GG_25619_c0_g1_i2,blat.proc3829895.chain_84,blat.proc3829895.chain_85	6	STRG.15358.2	1
scaffold_10	spliced_intron	8917449	8918183	+	asmbl_4617	none	STRG.12631.2,blat.proc3829877.chain_1154	2	STRG.12631.1,blat.proc3829877.chain_1155,blat.proc3829877.chain_1156	3
scaffold_28	retained_intron	293837	294231	+	asmbl_37962	none	STRG.29243.3,blat.proc3829885.chain_2401	2	STRG.29243.1,blat.proc3829885.chain_2399	2
scaffold_28	ends_in_intron	7745088	7745088	-	asmbl_37737	none	blat.proc3829901.chain_2850	1	STRG.29822.1,STRG.29822.2,blat.proc3829901.chain_2849	3
scaffold_3	spliced_intron	18372738	18372846	-	asmbl_39566	none	STRG.4050.1	1	blat.proc3829889.chain_36	1
scaffold_13	alternate_exon	1326933	1330826	+	asmbl_10529	none	STRG.15490.1,blat.proc3829879.chain_238	2	STRG.15490.2,blat.proc3829879.chain_237	2
scaffold_10	spliced_intron	10801165	10801378	+	asmbl_4713,asmbl_4716	none	STRG.12756.1,blat.proc3829877.chain_1330,blat.proc3829877.chain_1331,blat.proc3829877.chain_1332	4	STRG.12756.2	1
scaffold_1	spliced_intron	14360102	14360228	-	asmbl_909,asmbl_911,asmbl_913,asmbl_915	none	STRG.1033.1,STRG.1033.2,STRG.1033.3,blat.proc3829887.chain_882,blat.proc3829887.chain_884,blat.proc3829887.chain_887	6	Trinity_GG_17537_c0_g1_i2,blat.proc3829887.chain_885,blat.proc3829887.chain_886	3
scaffold_5	alt_donor	14711480	14711481	+	asmbl_44631	none	STRG.6666.3,blat.proc3829873.chain_2785	2	STRG.6666.1,Trinity_GG_3634_c0_g1_i1,blat.proc3829873.chain_2783,blat.proc3829873.chain_2784	4
scaffold_8	spliced_intron	8733193	8733226	+	asmbl_52011,asmbl_52012	none	STRG.10125.4,STRG.10125.5	2	STRG.10125.2,STRG.10125.3,Trinity_GG_5629_c2_g1_i4,blat.proc3829875.chain_2630,blat.proc3829875.chain_2631	5
scaffold_6	alternate_exon	2481736	2482637	-	asmbl_48075	none	STRG.7236.1,blat.proc3829889.chain_3220	2	blat.proc3829889.chain_3223	1
scaffold_1	skipped_exon	4237758	4240318	+	asmbl_1645,asmbl_1649	none	STRG.253.1,blat.proc3829871.chain_225,blat.proc3829871.chain_229	3	STRG.253.2,STRG.253.3,STRG.253.4,blat.proc3829871.chain_224,blat.proc3829871.chain_227,blat.proc3829871.chain_228,blat.proc3829871.chain_230,blat.proc3829871.chain_232,blat.proc3829871.chain_233	9
scaffold_6	alt_acceptor	10182549	10182550	-	asmbl_48604,asmbl_48606	none	STRG.7851.1,blat.proc3829891.chain_117,blat.proc3829891.chain_118	3	STRG.7851.2,blat.proc3829891.chain_116	2
scaffold_7	alt_donor	4915758	4915759	+	asmbl_50645	none	STRG.8828.4	1	STRG.8828.2,STRG.8828.3	2
scaffold_4	starts_in_intron	8946054	8946054	+	asmbl_42929	none	blat.proc3829873.chain_1003	1	STRG.4704.1,blat.proc3829873.chain_1002	2
scaffold_4	ends_in_intron	11403011	11403011	-	asmbl_41628	none	blat.proc3829889.chain_915	1	STRG.4843.1,blat.proc3829889.chain_916	2
scaffold_8	ends_in_intron	11849830	11849830	+	asmbl_52266	none	blat.proc3829875.chain_2983	1	STRG.10382.2,STRG.10382.3,blat.proc3829875.chain_2967,blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2975,blat.proc3829875.chain_2976,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978,blat.proc3829875.chain_2979	13
scaffold_7	spliced_intron	8507767	8508686	+	asmbl_50884,asmbl_50886,asmbl_50889	none	STRG.9068.4,STRG.9068.5,blat.proc3829875.chain_1525,blat.proc3829875.chain_1526	4	STRG.9068.2,blat.proc3829875.chain_1530	2
scaffold_15	alternate_exon	4118700	4118927	-	asmbl_15134	none	Trinity_GG_27184_c0_g2_i1,blat.proc3829895.chain_2830	2	STRG.18141.1,STRG.18141.2,STRG.18141.3,STRG.18141.4,Trinity_GG_27184_c0_g1_i1,blat.proc3829895.chain_2826,blat.proc3829895.chain_2828,blat.proc3829895.chain_2829	8
scaffold_10	alternate_exon	13283065	13283552	-	asmbl_3773	none	STRG.12910.3	1	STRG.12910.2,STRG.12910.4	2
scaffold_21	spliced_intron	5468667	5468783	-	asmbl_27680,asmbl_27681	none	STRG.24064.1,STRG.24064.2,blat.proc3829899.chain_1135	3	blat.proc3829899.chain_1136	1
scaffold_18	starts_in_intron	1876239	1876239	+	asmbl_20415,asmbl_20417	none	STRG.21065.2,STRG.21065.3,blat.proc3829881.chain_1956	3	STRG.21065.1	1
scaffold_24	alternate_exon	10484870	10484958	+	asmbl_32577	none	Trinity_GG_14920_c0_g1_i4,blat.proc3829885.chain_129	2	STRG.27000.1,STRG.27000.2,Trinity_GG_14920_c0_g1_i2,Trinity_GG_14920_c0_g1_i5,Trinity_GG_14920_c0_g1_i6,Trinity_GG_14920_c0_g1_i7,blat.proc3829885.chain_126,blat.proc3829885.chain_127,blat.proc3829885.chain_128,blat.proc3829885.chain_130	10
scaffold_1	alt_acceptor	10950349	10950350	+	asmbl_2031	none	blat.proc3829871.chain_752	1	STRG.713.1,STRG.713.3,blat.proc3829871.chain_749,blat.proc3829871.chain_751	4
scaffold_12	starts_in_intron	7519076	7519076	+	asmbl_8726	none	blat.proc3829877.chain_3311	1	STRG.14819.1,blat.proc3829877.chain_3310	2
scaffold_10	alternate_exon	11969824	11971460	+	asmbl_4790	none	Trinity_GG_7032_c0_g1_i9,blat.proc3829877.chain_1317	2	STRG.12831.2,Trinity_GG_7032_c0_g1_i16,blat.proc3829877.chain_1316	3
scaffold_2	skipped_exon	2880763	2882183	-	asmbl_22954,asmbl_22958,asmbl_22960,asmbl_22965,asmbl_22966	none	STRG.1733.1,STRG.1733.3,STRG.1733.4,blat.proc3829887.chain_1493,blat.proc3829887.chain_1494,blat.proc3829887.chain_1497,blat.proc3829887.chain_1498	7	STRG.1733.2,blat.proc3829887.chain_1492,blat.proc3829887.chain_1496,blat.proc3829887.chain_1500	4
scaffold_7	spliced_intron	1034813	1034848	+	asmbl_50454	none	STRG.8611.1	1	Trinity_GG_4730_c0_g1_i1	1
scaffold_13	alt_acceptor	11379416	11379417	-	asmbl_10043,asmbl_10045,asmbl_10048,asmbl_10052	none	STRG.16287.1,STRG.16287.2,STRG.16287.3,STRG.16287.4,Trinity_GG_26140_c0_g1_i1,Trinity_GG_26140_c0_g1_i5,Trinity_GG_26140_c0_g1_i8,blat.proc3829895.chain_1024,blat.proc3829895.chain_1028,blat.proc3829895.chain_1034	10	STRG.16287.5,STRG.16287.7,Trinity_GG_26140_c0_g1_i3,Trinity_GG_26140_c0_g1_i4,Trinity_GG_26140_c0_g1_i7,blat.proc3829895.chain_1026,blat.proc3829895.chain_1030,blat.proc3829895.chain_1033	8
scaffold_21	alternate_exon	4256090	4256315	-	asmbl_27596	none	STRG.23990.1,blat.proc3829899.chain_1049	2	STRG.23990.2	1
scaffold_21	retained_exon	7937551	7937647	-	asmbl_27887	none	STRG.24314.1,blat.proc3829899.chain_1370,blat.proc3829899.chain_1374	3	blat.proc3829899.chain_1372	1
scaffold_3	alternate_exon	10937268	10937558	-	asmbl_39075,asmbl_39076,asmbl_39077	none	STRG.3534.1,STRG.3534.2,STRG.3534.4,blat.proc3829887.chain_3294,blat.proc3829887.chain_3295	5	STRG.3534.3	1
scaffold_21	alt_acceptor	9866643	9866644	-	asmbl_27998	none	STRG.24438.3	1	STRG.24438.2	1
scaffold_8	starts_in_intron	18435130	18435130	+	asmbl_52548	none	Trinity_GG_5935_c0_g1_i3,blat.proc3829875.chain_3189	2	STRG.10734.1,STRG.10734.2,blat.proc3829875.chain_3190	3
scaffold_3	skipped_exon	14331851	14332118	+	asmbl_40470	none	blat.proc3829873.chain_178	1	STRG.3778.1,blat.proc3829873.chain_179,blat.proc3829873.chain_180	3
scaffold_4	alt_donor	5279441	5279442	-	asmbl_41326,asmbl_41327	none	STRG.4428.2,blat.proc3829889.chain_535	2	STRG.4428.1,blat.proc3829889.chain_534	2
scaffold_25	retained_exon	4467883	4467984	-	asmbl_34175	none	STRG.27360.2	1	STRG.27360.1	1
scaffold_13	retained_intron	16460036	16460303	-	asmbl_10277	none	STRG.16689.2,blat.proc3829895.chain_1356	2	STRG.16689.5	1
scaffold_15	alt_donor	8637588	8637589	+	asmbl_14290	none	STRG.18404.1,Trinity_GG_10093_c0_g1_i2,blat.proc3829879.chain_3015	3	STRG.18404.2,Trinity_GG_10093_c0_g1_i1,blat.proc3829879.chain_3016	3
scaffold_25	spliced_intron	4289292	4289367	+	asmbl_33481	none	STRG.27341.2	1	STRG.27341.1,blat.proc3829885.chain_273	2
scaffold_13	retained_exon	12460893	12460942	-	asmbl_10102,asmbl_10103	none	STRG.16359.2,STRG.16359.3,blat.proc3829895.chain_1063	3	blat.proc3829895.chain_1062	1
scaffold_5	retained_intron	17227119	17227597	+	asmbl_44808	none	STRG.6887.3,Trinity_GG_3788_c0_g1_i1,Trinity_GG_3788_c3_g1_i1,blat.proc3829873.chain_3032,blat.proc3829873.chain_3037	5	STRG.6887.1,STRG.6887.2,blat.proc3829873.chain_3028,blat.proc3829873.chain_3029,blat.proc3829873.chain_3030,blat.proc3829873.chain_3031,blat.proc3829873.chain_3033	7
scaffold_13	starts_in_intron	366248	366248	-	asmbl_9280	none	Trinity_GG_25666_c0_g1_i1,blat.proc3829895.chain_162	2	STRG.15426.1,STRG.15426.3,STRG.15426.5,Trinity_GG_25666_c0_g1_i11,Trinity_GG_25666_c0_g1_i3,blat.proc3829895.chain_155,blat.proc3829895.chain_165	7
scaffold_16	spliced_intron	430142	430213	-	asmbl_16043,asmbl_16044,asmbl_16045,asmbl_16046,asmbl_16050,asmbl_16051,asmbl_16052,asmbl_16053,asmbl_16054	none	STRG.19039.1,blat.proc3829897.chain_17,blat.proc3829897.chain_18,blat.proc3829897.chain_19,blat.proc3829897.chain_23,blat.proc3829897.chain_24,blat.proc3829897.chain_25,blat.proc3829897.chain_26,blat.proc3829897.chain_27	9	blat.proc3829897.chain_16,blat.proc3829897.chain_20,blat.proc3829897.chain_21,blat.proc3829897.chain_22	4
scaffold_27	alternate_exon	2881986	2882032	+	asmbl_36101	none	STRG.28753.3,blat.proc3829885.chain_1821	2	STRG.28753.1,STRG.28753.2,STRG.28753.4,blat.proc3829885.chain_1817,blat.proc3829885.chain_1819,blat.proc3829885.chain_1820,blat.proc3829885.chain_1822,blat.proc3829885.chain_1823	8
scaffold_19	retained_intron	8218983	8219156	-	asmbl_21493	none	blat.proc3829897.chain_2993	1	STRG.22259.1,STRG.22259.2,blat.proc3829897.chain_2994,blat.proc3829897.chain_2995	4
scaffold_3	spliced_intron	3062725	3062797	+	asmbl_39888	none	STRG.3058.2,Trinity_GG_1682_c0_g1_i3,blat.proc3829871.chain_3138	3	STRG.3058.1,blat.proc3829871.chain_3136,blat.proc3829871.chain_3137	3
scaffold_7	alt_acceptor	8711884	8711885	-	asmbl_49844	none	STRG.9102.1	1	STRG.9102.2,blat.proc3829891.chain_1361	2
scaffold_27	alternate_exon	5924579	5927022	-	asmbl_36997	none	STRG.28980.2,blat.proc3829901.chain_2163	2	blat.proc3829901.chain_2166	1
scaffold_1	starts_in_intron	12183740	12183740	-	asmbl_698	none	blat.proc3829887.chain_715	1	STRG.847.1	1
scaffold_8	ends_in_intron	18433264	18433264	+	asmbl_52551	none	Trinity_GG_5935_c0_g2_i1	1	STRG.10734.1,STRG.10734.2,blat.proc3829875.chain_3190	3
scaffold_1	alt_donor	5996903	5996904	-	asmbl_318	none	blat.proc3829887.chain_308	1	STRG.403.3,blat.proc3829887.chain_312	2
scaffold_1	spliced_intron	14181858	14181932	+	asmbl_2317,asmbl_2318	none	STRG.1000.1,blat.proc3829871.chain_1040,blat.proc3829871.chain_1041	3	STRG.1000.2	1
scaffold_14	alt_acceptor	330788	330789	-	asmbl_12801,asmbl_12802	none	STRG.16713.2,Trinity_GG_26365_c0_g1_i2,Trinity_GG_26365_c0_g1_i3,blat.proc3829895.chain_1416,blat.proc3829895.chain_1417	5	STRG.16713.1,Trinity_GG_26365_c0_g1_i4,blat.proc3829895.chain_1418	3
scaffold_17	spliced_intron	8640140	8640241	-	asmbl_19155	none	STRG.20469.1,blat.proc3829897.chain_1359	2	blat.proc3829897.chain_1360	1
scaffold_17	retained_intron	7116861	7117011	-	asmbl_19083,asmbl_19084	none	STRG.20367.2,Trinity_GG_28472_c0_g1_i2,Trinity_GG_28472_c0_g1_i4,blat.proc3829897.chain_1337,blat.proc3829897.chain_1339	5	STRG.20367.1,Trinity_GG_28472_c0_g1_i1,Trinity_GG_28472_c0_g1_i3,blat.proc3829897.chain_1338,blat.proc3829897.chain_1340	5
scaffold_21	alt_acceptor	11299752	11299753	-	asmbl_28146	none	STRG.24589.2	1	STRG.24589.1,blat.proc3829899.chain_1747	2
scaffold_13	spliced_intron	13570435	13570458	+	asmbl_11379	none	blat.proc3829879.chain_1120	1	Trinity_GG_9001_c0_g1_i1,Trinity_GG_9001_c0_g1_i2,blat.proc3829879.chain_1119	3
scaffold_9	alt_donor	119370	119371	+	asmbl_53734	none	STRG.10764.1	1	STRG.10764.2,blat.proc3829875.chain_3264	2
scaffold_3	spliced_intron	13462730	13462851	+	asmbl_40399	none	STRG.3701.1,blat.proc3829873.chain_31	2	blat.proc3829873.chain_32	1
scaffold_23	ends_in_intron	271684	271684	-	asmbl_31296	none	blat.proc3829899.chain_2617	1	STRG.25529.1,blat.proc3829899.chain_2615,blat.proc3829899.chain_2616,blat.proc3829899.chain_2618,blat.proc3829899.chain_2619	5
scaffold_10	spliced_intron	1425809	1425931	+	asmbl_4222	none	blat.proc3829877.chain_733	1	STRG.12005.2,STRG.12005.3,Trinity_GG_6688_c0_g1_i4,Trinity_GG_6688_c0_g1_i8,blat.proc3829877.chain_727,blat.proc3829877.chain_728,blat.proc3829877.chain_732	7
scaffold_19	spliced_intron	13010263	13010705	-	asmbl_21794,asmbl_21797,asmbl_21798,asmbl_21799,asmbl_21800,asmbl_21801	none	STRG.22610.1,STRG.22610.2,STRG.22610.3,STRG.22610.4,blat.proc3829897.chain_3402,blat.proc3829897.chain_3403,blat.proc3829897.chain_3404	7	Trinity_GG_29614_c1_g1_i1,blat.proc3829897.chain_3405	2
scaffold_5	retained_exon	6564990	6565036	+	asmbl_44102	none	STRG.6047.2	1	STRG.6047.1,blat.proc3829873.chain_2179,blat.proc3829873.chain_2181	3
scaffold_3	ends_in_intron	1342263	1342263	-	asmbl_38660	none	Trinity_GG_18643_c2_g1_i1,blat.proc3829887.chain_2775	2	STRG.2956.1	1
scaffold_5	starts_in_intron	6583966	6583966	-	asmbl_45488	none	blat.proc3829889.chain_2134	1	blat.proc3829889.chain_2135,blat.proc3829889.chain_2136	2
scaffold_27	spliced_intron	3093328	3093432	-	asmbl_36846	none	STRG.28775.5	1	STRG.28775.1,STRG.28775.4,Trinity_GG_33109_c0_g1_i6,blat.proc3829901.chain_1946,blat.proc3829901.chain_1947,blat.proc3829901.chain_1952	6
scaffold_24	retained_intron	10779531	10779624	-	asmbl_33212,asmbl_33214	none	blat.proc3829901.chain_293,blat.proc3829901.chain_296	2	STRG.27021.1,blat.proc3829901.chain_292,blat.proc3829901.chain_294	3
scaffold_4	spliced_intron	18348146	18348526	+	asmbl_43444	none	STRG.5437.1,blat.proc3829873.chain_1646	2	STRG.5437.2	1
scaffold_4	alt_acceptor	16433825	16433826	-	asmbl_41921	none	STRG.5221.3	1	STRG.5221.1,STRG.5221.2	2
scaffold_3	alt_acceptor	7917853	7917854	-	asmbl_38949,asmbl_38952	none	STRG.3375.4,STRG.3375.5	2	STRG.3375.1,STRG.3375.2,STRG.3375.3,blat.proc3829887.chain_3073,blat.proc3829887.chain_3074	5
scaffold_8	retained_intron	4287919	4288179	+	asmbl_51813	none	STRG.9898.1,Trinity_GG_5516_c0_g2_i1,blat.proc3829875.chain_2399,blat.proc3829875.chain_2400	4	STRG.9898.2	1
scaffold_500	spliced_intron	2522	2745	+	asmbl_46446,asmbl_46448,asmbl_46450	none	STRG.30347.3,STRG.30347.4,blat.proc3829885.chain_3357,blat.proc3829885.chain_3361	4	STRG.30347.1,STRG.30347.2,Trinity_GG_16793_c0_g1_i10,blat.proc3829885.chain_3358,blat.proc3829885.chain_3362,blat.proc3829885.chain_3363	6
scaffold_2	ends_in_intron	6512406	6512406	-	asmbl_23235	none	Trinity_GG_18148_c0_g1_i2,blat.proc3829887.chain_1933	2	STRG.2013.3	1
scaffold_15	starts_in_intron	13761158	13761158	-	asmbl_15683	none	blat.proc3829895.chain_3565	1	STRG.18798.1,STRG.18798.2,blat.proc3829895.chain_3562,blat.proc3829895.chain_3564,blat.proc3829895.chain_3566	5
scaffold_24	alt_acceptor	10605540	10605541	+	asmbl_32583	none	blat.proc3829885.chain_141	1	STRG.27008.1,STRG.27008.2,blat.proc3829885.chain_139,blat.proc3829885.chain_140,blat.proc3829885.chain_142	5
scaffold_27	starts_in_intron	2787267	2787267	+	asmbl_36066	none	blat.proc3829885.chain_1752	1	STRG.28736.1,blat.proc3829885.chain_1753,blat.proc3829885.chain_1755,blat.proc3829885.chain_1756	4
scaffold_25	starts_in_intron	3682715	3682715	+	asmbl_33447	none	blat.proc3829885.chain_300	1	STRG.27296.1,blat.proc3829885.chain_299	2
scaffold_4	alt_acceptor	4550405	4550406	+	asmbl_42620	none	blat.proc3829873.chain_738	1	STRG.4367.1,STRG.4367.2,STRG.4367.3,blat.proc3829873.chain_737	4
scaffold_5	starts_in_intron	9725434	9725434	+	asmbl_44304	none	Trinity_GG_3434_c0_g1_i2,blat.proc3829873.chain_2442	2	STRG.6280.1,STRG.6280.2,blat.proc3829873.chain_2444,blat.proc3829873.chain_2445	4
scaffold_14	alternate_exon	8007490	8007645	+	asmbl_12169	none	Trinity_GG_9476_c0_g1_i3,blat.proc3829879.chain_1951	2	STRG.17203.3	1
scaffold_21	retained_intron	6817863	6818183	+	asmbl_28719,asmbl_28720	none	blat.proc3829883.chain_1301,blat.proc3829883.chain_1303	2	STRG.24196.1,blat.proc3829883.chain_1300,blat.proc3829883.chain_1304	3
scaffold_2	retained_intron	4070470	4071066	-	asmbl_23076	none	Trinity_GG_18017_c0_g1_i1,blat.proc3829887.chain_1659	2	STRG.1852.2	1
scaffold_17	starts_in_intron	8770248	8770248	-	asmbl_19161	none	Trinity_GG_28528_c0_g1_i1,blat.proc3829897.chain_1437	2	STRG.20477.1,Trinity_GG_28528_c0_g1_i2,blat.proc3829897.chain_1438	3
scaffold_20	ends_in_intron	10470856	10470856	-	asmbl_27030	none	blat.proc3829899.chain_583	1	STRG.23572.1,blat.proc3829899.chain_579,blat.proc3829899.chain_581	3
scaffold_4	ends_in_intron	15358546	15358546	+	asmbl_43282	none	STRG.5128.1,blat.proc3829873.chain_1449	2	STRG.5128.2	1
scaffold_16	alt_donor	14663271	14663272	-	asmbl_16674	none	STRG.19849.1,blat.proc3829897.chain_809	2	STRG.19849.2	1
scaffold_27	spliced_intron	4004657	4005068	+	asmbl_36207,asmbl_36210,asmbl_36213	none	STRG.28848.2,blat.proc3829885.chain_1935,blat.proc3829885.chain_1938	3	STRG.28848.3,Trinity_GG_15970_c0_g1_i5,blat.proc3829885.chain_1937,blat.proc3829885.chain_1939	4
scaffold_14	starts_in_intron	12002333	12002333	+	asmbl_12392	none	STRG.17524.2,Trinity_GG_9631_c0_g1_i1,blat.proc3829879.chain_2215	3	STRG.17524.1	1
scaffold_1	spliced_intron	14274143	14274240	+	asmbl_2342,asmbl_2343	none	STRG.1020.1,STRG.1020.2,blat.proc3829871.chain_1117,blat.proc3829871.chain_1118	4	blat.proc3829871.chain_1119	1
scaffold_20	ends_in_intron	11101989	11101989	+	asmbl_26166	none	Trinity_GG_13072_c0_g1_i1,blat.proc3829883.chain_756	2	STRG.23614.1,blat.proc3829883.chain_757,blat.proc3829883.chain_758	3
scaffold_5	ends_in_intron	946675	946675	-	asmbl_45189	none	Trinity_GG_20180_c0_g1_i1,blat.proc3829889.chain_1721	2	blat.proc3829889.chain_1720	1
scaffold_9	retained_exon	3387786	3387899	+	asmbl_53881	none	blat.proc3829875.chain_3386	1	STRG.10937.1,Trinity_GG_6065_c0_g1_i1,blat.proc3829875.chain_3385	3
scaffold_6	alternate_exon	878101	878146	+	asmbl_46637	none	STRG.7151.3	1	STRG.7151.1	1
scaffold_5	starts_in_intron	14261207	14261207	+	asmbl_44583	none	STRG.6629.3	1	STRG.6629.1,STRG.6629.2,Trinity_GG_3625_c0_g1_i10,blat.proc3829873.chain_2763,blat.proc3829873.chain_2764,blat.proc3829873.chain_2767,blat.proc3829873.chain_2769	7
scaffold_27	spliced_intron	313987	314158	-	asmbl_36615,asmbl_36616,asmbl_36617	none	STRG.28538.1,STRG.28538.2,STRG.28538.3	3	Trinity_GG_32948_c0_g1_i13,blat.proc3829901.chain_1673	2
scaffold_21	alt_acceptor	6507831	6507832	+	asmbl_28675	none	STRG.24158.1,blat.proc3829883.chain_1306	2	STRG.24158.2,STRG.24158.3,blat.proc3829883.chain_1307	3
scaffold_21	starts_in_intron	1689745	1689745	+	asmbl_28379	none	blat.proc3829883.chain_926	1	STRG.23812.1,blat.proc3829883.chain_927	2
scaffold_1	alt_acceptor	3257807	3257808	+	asmbl_1577,asmbl_1578	none	Trinity_GG_125_c0_g1_i2,Trinity_GG_125_c0_g1_i5,blat.proc3829871.chain_211,blat.proc3829871.chain_212	4	STRG.201.1,STRG.201.2,STRG.201.3,Trinity_GG_125_c0_g1_i1,Trinity_GG_125_c0_g1_i4,Trinity_GG_125_c0_g1_i6,blat.proc3829871.chain_209,blat.proc3829871.chain_210,blat.proc3829871.chain_213	9
scaffold_10	retained_exon	987263	987376	-	asmbl_2940,asmbl_2941	none	STRG.11980.1,STRG.11980.2,blat.proc3829893.chain_423	3	STRG.11980.3	1
scaffold_14	alt_acceptor	13601365	13601366	+	asmbl_12473,asmbl_12474	none	blat.proc3829879.chain_2306,blat.proc3829879.chain_2307	2	STRG.17629.1,STRG.17629.2	2
scaffold_13	skipped_exon	5334067	5336246	+	asmbl_10821,asmbl_10822	none	STRG.15817.2,blat.proc3829879.chain_514	2	STRG.15817.1,blat.proc3829879.chain_511,blat.proc3829879.chain_512	3
scaffold_3	spliced_intron	16346254	16346337	-	asmbl_39445	none	STRG.3908.2,blat.proc3829889.chain_1	2	Trinity_GG_19193_c1_g1_i2,blat.proc3829887.chain_3749	2
scaffold_6	alternate_exon	14622388	14622504	-	asmbl_48951	none	STRG.8218.5	1	blat.proc3829891.chain_467	1
scaffold_2	alt_acceptor	15656463	15656464	-	asmbl_23662	none	STRG.2517.2,blat.proc3829887.chain_2373	2	STRG.2517.1	1
scaffold_18	starts_in_intron	5909451	5909451	+	asmbl_20650	none	Trinity_GG_11755_c0_g1_i1,blat.proc3829881.chain_2261	2	STRG.21332.1,Trinity_GG_11755_c0_g1_i2,blat.proc3829881.chain_2259	3
scaffold_7	starts_in_intron	712260	712260	-	asmbl_49509	none	STRG.8600.2	1	STRG.8600.1,blat.proc3829891.chain_978,blat.proc3829891.chain_979,blat.proc3829891.chain_980	4
scaffold_10	alt_acceptor	11970267	11970268	+	asmbl_4794	none	blat.proc3829877.chain_1322	1	blat.proc3829877.chain_1319	1
scaffold_9	spliced_intron	11825456	11825553	-	asmbl_55281	none	blat.proc3829891.chain_3533	1	STRG.11490.2,STRG.11490.4,blat.proc3829891.chain_3534	3
scaffold_13	retained_intron	2270204	2270425	-	asmbl_9401,asmbl_9404,asmbl_9405	none	STRG.15533.3,blat.proc3829895.chain_310,blat.proc3829895.chain_317	3	STRG.15533.1,STRG.15533.2,blat.proc3829895.chain_308,blat.proc3829895.chain_311	4
scaffold_13	retained_intron	2270481	2270608	-	asmbl_9404	none	blat.proc3829895.chain_310	1	STRG.15533.1,STRG.15533.2,STRG.15533.3,blat.proc3829895.chain_308,blat.proc3829895.chain_311,blat.proc3829895.chain_317	6
scaffold_25	retained_intron	6038950	6039040	-	asmbl_34281	none	Trinity_GG_32410_c0_g1_i2,blat.proc3829901.chain_791	2	STRG.27467.1,STRG.27467.2,blat.proc3829901.chain_790	3
scaffold_15	skipped_exon	14324311	14324883	-	asmbl_15729	none	STRG.18855.3	1	blat.proc3829895.chain_3603	1
scaffold_21	ends_in_intron	3169189	3169189	+	asmbl_28487,asmbl_28494	none	STRG.23945.4,STRG.23945.5	2	STRG.23945.1,STRG.23945.2,STRG.23945.3,blat.proc3829883.chain_1049,blat.proc3829883.chain_1050,blat.proc3829883.chain_1051,blat.proc3829883.chain_1052,blat.proc3829883.chain_1053,blat.proc3829883.chain_1054,blat.proc3829883.chain_1055,blat.proc3829883.chain_1056	11
scaffold_24	alt_acceptor	162380	162381	-	asmbl_32691	none	STRG.26299.1	1	STRG.26299.2,Trinity_GG_31713_c0_g1_i3,blat.proc3829899.chain_3374	3
scaffold_7	spliced_intron	11144044	11145072	+	asmbl_51030,asmbl_51032,asmbl_51033,asmbl_51034	none	STRG.9251.1,blat.proc3829875.chain_1725,blat.proc3829875.chain_1726,blat.proc3829875.chain_1727,blat.proc3829875.chain_1728	5	STRG.9251.2,blat.proc3829875.chain_1729,blat.proc3829875.chain_1730	3
scaffold_11	retained_exon	13578959	13579057	-	asmbl_7122	none	STRG.14204.2	1	STRG.14204.1,STRG.14204.3,blat.proc3829893.chain_2652,blat.proc3829893.chain_2654	4
scaffold_14	alt_donor	13899551	13899552	+	asmbl_12500	none	STRG.17653.5	1	STRG.17653.4	1
scaffold_17	alt_donor	11036020	11036021	-	asmbl_19312	none	STRG.20653.1	1	STRG.20653.4	1
scaffold_12	alt_donor	14881146	14881147	-	asmbl_8142	none	blat.proc3829893.chain_3637	1	STRG.15256.1,blat.proc3829893.chain_3636	2
scaffold_7	alternate_exon	17991109	17991295	+	asmbl_51396	none	STRG.9629.3	1	STRG.9629.1,STRG.9629.2,blat.proc3829875.chain_2082	3
scaffold_10	alternate_exon	17157475	17157529	-	asmbl_3940	none	blat.proc3829893.chain_1646	1	STRG.13151.1,blat.proc3829893.chain_1644	2
scaffold_21	spliced_intron	5537163	5537307	-	asmbl_27704,asmbl_27705	none	STRG.24073.1,STRG.24073.3	2	STRG.24073.2,Trinity_GG_30443_c0_g1_i6,blat.proc3829899.chain_1163,blat.proc3829899.chain_1165,blat.proc3829899.chain_1166,blat.proc3829899.chain_1167,blat.proc3829899.chain_1168	7
scaffold_5	alternate_exon	10652789	10652997	+	asmbl_44354	none	STRG.6337.2	1	STRG.6337.1,blat.proc3829873.chain_2500	2
scaffold_2	skipped_exon	486166	488771	-	asmbl_22833	none	STRG.1533.2	1	STRG.1533.1,STRG.1533.3,blat.proc3829887.chain_1414,blat.proc3829887.chain_1416	4
scaffold_4	alt_acceptor	4444071	4444072	+	asmbl_42602	none	STRG.4343.2,Trinity_GG_2424_c0_g1_i2,blat.proc3829873.chain_743	3	STRG.4343.1,Trinity_GG_2424_c0_g1_i1,blat.proc3829873.chain_744	3
scaffold_13	starts_in_intron	12253986	12253986	+	asmbl_11332	none	Trinity_GG_8947_c0_g1_i2,blat.proc3829879.chain_1008	2	STRG.16339.1,STRG.16339.2,STRG.16339.3,Trinity_GG_8947_c0_g1_i1,Trinity_GG_8947_c0_g1_i3,blat.proc3829879.chain_1005,blat.proc3829879.chain_1006,blat.proc3829879.chain_1007	8
scaffold_11	retained_intron	854023	854153	+	asmbl_5265	none	Trinity_GG_7265_c0_g1_i1,blat.proc3829877.chain_1715	2	STRG.13271.1,blat.proc3829877.chain_1716,blat.proc3829877.chain_1718	3
scaffold_11	alternate_exon	15833132	15833770	+	asmbl_6115	none	STRG.14312.3,Trinity_GG_7857_c2_g1_i1,blat.proc3829877.chain_2739	3	STRG.14312.4	1
scaffold_18	spliced_intron	4077684	4077771	+	asmbl_20518,asmbl_20519,asmbl_20520,asmbl_20521	none	STRG.21199.1,blat.proc3829881.chain_2063	2	Trinity_GG_11659_c1_g1_i1,blat.proc3829881.chain_2062	2
scaffold_340	alt_donor	4207	4208	+	asmbl_40970	none	STRG.30268.1	1	Trinity_GG_16762_c0_g1_i1,blat.proc3829885.chain_3305	2
scaffold_21	alternate_exon	5775062	5775179	-	asmbl_27722	none	blat.proc3829899.chain_1202	1	STRG.24099.2,blat.proc3829899.chain_1199	2
scaffold_3	retained_intron	18347595	18347705	-	asmbl_39561	none	blat.proc3829873.chain_417	1	STRG.4038.1,blat.proc3829889.chain_77	2
scaffold_9	ends_in_intron	9702511	9702511	+	asmbl_54218	none	blat.proc3829877.chain_115	1	STRG.11336.1,STRG.11336.2,STRG.11336.3,STRG.11336.4,STRG.11336.5,blat.proc3829877.chain_109,blat.proc3829877.chain_110,blat.proc3829877.chain_112	8
scaffold_4	ends_in_intron	5179822	5179822	+	asmbl_42668	none	STRG.4405.1	1	blat.proc3829873.chain_784	1
scaffold_395	retained_exon	3388	3594	-	asmbl_41032	none	STRG.30280.1,blat.proc3829901.chain_3348	2	STRG.30280.2	1
scaffold_13	retained_intron	8955171	8955244	+	asmbl_11146	none	STRG.16151.1,blat.proc3829879.chain_862	2	blat.proc3829879.chain_861	1
scaffold_28	retained_intron	575733	575994	-	asmbl_37241	none	STRG.29265.3,blat.proc3829901.chain_2356	2	STRG.29265.1,STRG.29265.2,blat.proc3829901.chain_2355	3
scaffold_19	skipped_exon	10221442	10223579	+	asmbl_22431	none	STRG.22389.1,blat.proc3829881.chain_3317	2	STRG.22389.2,STRG.22389.3	2
scaffold_6	spliced_intron	14179224	14179390	-	asmbl_48925,asmbl_48926,asmbl_48929	none	STRG.8173.1,STRG.8173.2,blat.proc3829891.chain_508,blat.proc3829891.chain_509	4	blat.proc3829891.chain_510	1
scaffold_23	starts_in_intron	5345347	5345347	+	asmbl_30867	none	Trinity_GG_14297_c0_g1_i2,blat.proc3829883.chain_2785	2	STRG.25901.1,Trinity_GG_14297_c0_g1_i1,blat.proc3829883.chain_2786	3
scaffold_7	alt_donor	3957769	3957770	-	asmbl_49651,asmbl_49653	none	STRG.8779.1,blat.proc3829891.chain_1076,blat.proc3829891.chain_1077	3	STRG.8779.2,STRG.8779.3	2
scaffold_17	skipped_exon	2740165	2740935	-	asmbl_18826	none	STRG.20064.3	1	STRG.20064.1,blat.proc3829897.chain_1038	2
scaffold_18	alt_donor	3100809	3100810	-	asmbl_19783	none	STRG.21147.1	1	STRG.21147.2	1
scaffold_2	retained_exon	11258793	11258873	+	asmbl_24782,asmbl_24783	none	STRG.2255.1,STRG.2255.2,blat.proc3829871.chain_2294,blat.proc3829871.chain_2295	4	STRG.2255.3	1
scaffold_10	starts_in_intron	10278265	10278265	-	asmbl_3619	none	blat.proc3829893.chain_1234	1	STRG.12709.2,STRG.12709.3,Trinity_GG_24134_c1_g1_i8,blat.proc3829893.chain_1236	4
scaffold_6	alt_acceptor	3326373	3326374	+	asmbl_46776,asmbl_46778	none	STRG.7331.2,STRG.7331.3,blat.proc3829873.chain_3377	3	STRG.7331.1,blat.proc3829873.chain_3376	2
scaffold_16	retained_intron	11607412	11607538	+	asmbl_17393	none	STRG.19668.1,blat.proc3829881.chain_557	2	STRG.19668.2	1
scaffold_18	retained_intron	13634278	13634349	-	asmbl_20205	none	blat.proc3829897.chain_2524	1	STRG.21784.1,blat.proc3829897.chain_2525	2
scaffold_17	retained_intron	3142038	3142233	-	asmbl_18844	none	STRG.20084.2,Trinity_GG_28258_c0_g1_i4,blat.proc3829897.chain_998	3	STRG.20084.1,blat.proc3829897.chain_996	2
scaffold_8	ends_in_intron	17400824	17400824	-	asmbl_53465	none	Trinity_GG_22932_c0_g1_i1,blat.proc3829891.chain_2810	2	STRG.10656.1,Trinity_GG_22932_c0_g1_i4,blat.proc3829891.chain_2809	3
scaffold_18	retained_intron	370096	370294	-	asmbl_19616	none	blat.proc3829897.chain_1875	1	STRG.20979.1,blat.proc3829897.chain_1876,blat.proc3829897.chain_1878,blat.proc3829897.chain_1879	4
scaffold_24	starts_in_intron	8118451	8118451	+	asmbl_32417	none	blat.proc3829883.chain_3718	1	STRG.26841.1,STRG.26841.2,blat.proc3829883.chain_3717	3
scaffold_26	starts_in_intron	8576816	8576816	+	asmbl_35707	none	Trinity_GG_15736_c0_g1_i3,blat.proc3829885.chain_1469	2	STRG.28421.1,STRG.28421.2,blat.proc3829885.chain_1470,blat.proc3829885.chain_1471	4
scaffold_18	alternate_exon	5581447	5581657	-	asmbl_19900	none	Trinity_GG_28953_c2_g1_i1	1	STRG.21301.1,blat.proc3829897.chain_2187	2
scaffold_23	ends_in_intron	4694629	4694629	+	asmbl_30829	none	blat.proc3829883.chain_2662	1	STRG.25855.1,blat.proc3829883.chain_2663	2
scaffold_7	spliced_intron	11147047	11147136	+	asmbl_51030,asmbl_51032,asmbl_51035	none	STRG.9251.1,blat.proc3829875.chain_1725,blat.proc3829875.chain_1726,blat.proc3829875.chain_1729	4	STRG.9251.2,blat.proc3829875.chain_1727,blat.proc3829875.chain_1728,blat.proc3829875.chain_1730	4
scaffold_17	ends_in_intron	12387493	12387493	-	asmbl_19378	none	Trinity_GG_28651_c0_g1_i5	1	STRG.20776.3	1
scaffold_3	spliced_intron	11526115	11526216	+	asmbl_40314	none	STRG.3581.1,Trinity_GG_2027_c1_g1_i2,blat.proc3829873.chain_10	3	Trinity_GG_2027_c1_g1_i1,blat.proc3829873.chain_9	2
scaffold_3	retained_exon	7714418	7714567	-	asmbl_38927	none	STRG.3361.1,blat.proc3829887.chain_3177	2	STRG.3361.2,Trinity_GG_18844_c3_g1_i1	2
scaffold_22	alternate_exon	6128255	6128540	+	asmbl_29398	none	STRG.24955.7	1	STRG.24955.3,STRG.24955.4,blat.proc3829883.chain_1996,blat.proc3829883.chain_1998,blat.proc3829883.chain_1999,blat.proc3829883.chain_2002	6
scaffold_8	spliced_intron	8901322	8902097	-	asmbl_52974	none	STRG.10137.1,blat.proc3829891.chain_2317	2	STRG.10137.2,blat.proc3829891.chain_2318	2
scaffold_3	retained_intron	17364750	17364900	-	asmbl_39494,asmbl_39498	none	blat.proc3829889.chain_22,blat.proc3829889.chain_27	2	STRG.3972.4,blat.proc3829889.chain_24	2
scaffold_2	alternate_exon	14203487	14203709	-	asmbl_23592	none	blat.proc3829887.chain_2299	1	STRG.2411.1,STRG.2411.4,blat.proc3829887.chain_2297,blat.proc3829887.chain_2298	4
scaffold_18	alternate_exon	4768832	4769200	+	asmbl_20593	none	STRG.21260.3	1	STRG.21260.4,Trinity_GG_11674_c0_g1_i2,blat.proc3829881.chain_2086	3
scaffold_9	spliced_intron	11054396	11054475	+	asmbl_54316	none	STRG.11411.2,blat.proc3829877.chain_217	2	STRG.11411.1,blat.proc3829877.chain_218	2
scaffold_5	alt_donor	15418243	15418244	-	asmbl_46048	none	STRG.6723.3	1	STRG.6723.1,blat.proc3829889.chain_2796	2
scaffold_13	starts_in_intron	7114140	7114140	+	asmbl_11003	none	STRG.15995.2,Trinity_GG_8795_c0_g1_i1,blat.proc3829879.chain_720	3	STRG.15995.1,blat.proc3829879.chain_718	2
scaffold_15	ends_in_intron	5457293	5457293	-	asmbl_15221	none	Trinity_GG_27252_c0_g1_i8,blat.proc3829895.chain_2951	2	STRG.18219.1,STRG.18219.2,Trinity_GG_27252_c0_g1_i10,blat.proc3829895.chain_2953,blat.proc3829895.chain_2954,blat.proc3829895.chain_2955,blat.proc3829895.chain_2956	7
scaffold_4	starts_in_intron	16315601	16315601	+	asmbl_43300	none	STRG.5205.2,blat.proc3829873.chain_1512	2	STRG.5205.1	1
scaffold_10	spliced_intron	8917894	8918183	+	asmbl_4620	none	blat.proc3829877.chain_1157	1	STRG.12631.1,blat.proc3829877.chain_1155,blat.proc3829877.chain_1156	3
scaffold_13	spliced_intron	2507878	2508092	+	asmbl_10602,asmbl_10603,asmbl_10606	none	STRG.15546.1,STRG.15546.2,STRG.15546.3,Trinity_GG_8559_c0_g1_i1,Trinity_GG_8559_c0_g1_i3,blat.proc3829879.chain_269,blat.proc3829879.chain_271	7	Trinity_GG_8559_c0_g1_i4,Trinity_GG_8559_c0_g1_i5,blat.proc3829879.chain_268,blat.proc3829879.chain_270	4
scaffold_13	skipped_exon	2338672	2340365	+	asmbl_10577,asmbl_10578	none	blat.proc3829879.chain_156,blat.proc3829879.chain_163	2	STRG.15543.10,STRG.15543.11,STRG.15543.3,STRG.15543.4,STRG.15543.6,STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_154,blat.proc3829879.chain_157,blat.proc3829879.chain_159,blat.proc3829879.chain_161,blat.proc3829879.chain_162,blat.proc3829879.chain_164	13
scaffold_1	retained_intron	849299	849972	+	asmbl_1417	none	Trinity_GG_29_c0_g1_i4,blat.proc3829871.chain_53	2	STRG.41.1,Trinity_GG_29_c0_g1_i2,blat.proc3829871.chain_52	3
scaffold_7	spliced_intron	13205784	13205988	+	asmbl_51195,asmbl_51199	none	STRG.9419.1,blat.proc3829875.chain_1853,blat.proc3829875.chain_1855	3	STRG.9419.2,STRG.9419.3,blat.proc3829875.chain_1851,blat.proc3829875.chain_1856	4
scaffold_1	alt_acceptor	3177902	3177903	+	asmbl_1573	none	STRG.197.2	1	STRG.197.1,Trinity_GG_90_c0_g1_i1,blat.proc3829871.chain_156	3
scaffold_28	alternate_exon	2198739	2199054	+	asmbl_38040	none	STRG.29368.3	1	STRG.29368.2,Trinity_GG_16268_c0_g1_i2,blat.proc3829885.chain_2446	3
scaffold_23	alt_acceptor	9956312	9956313	-	asmbl_31830,asmbl_31831	none	STRG.26184.2,STRG.26184.3	2	STRG.26184.1,blat.proc3829899.chain_3241,blat.proc3829899.chain_3243	3
scaffold_27	alt_acceptor	3145198	3145199	+	asmbl_36155	none	STRG.28785.2	1	STRG.28785.1,blat.proc3829885.chain_1718	2
scaffold_6	ends_in_intron	2488431	2488431	+	asmbl_46701,asmbl_46702	none	blat.proc3829873.chain_3419	1	STRG.7239.1,STRG.7239.3,STRG.7240.1	3
scaffold_20	alt_donor	11151331	11151332	-	asmbl_27066	none	STRG.23626.1,Trinity_GG_30166_c0_g1_i2,blat.proc3829899.chain_611	3	STRG.23626.2,Trinity_GG_30166_c0_g1_i1,blat.proc3829899.chain_612	3
scaffold_6	skipped_exon	4931559	4933652	-	asmbl_48313	none	STRG.7462.2,blat.proc3829889.chain_3533	2	STRG.7462.1,blat.proc3829889.chain_3534	2
scaffold_18	alternate_exon	4158081	4158194	+	asmbl_20535	none	STRG.21212.2,blat.proc3829881.chain_2044	2	STRG.21212.1,blat.proc3829881.chain_2045	2
scaffold_12	retained_intron	16247233	16247328	+	asmbl_9120,asmbl_9122	none	STRG.15363.3,Trinity_GG_8439_c0_g1_i1,blat.proc3829879.chain_16	3	STRG.15363.2,Trinity_GG_8439_c0_g1_i3,blat.proc3829879.chain_15	3
scaffold_7	spliced_intron	12270450	12271072	+	asmbl_51111,asmbl_51114,asmbl_51115	none	STRG.9313.4,STRG.9313.7,Trinity_GG_5141_c0_g1_i5,Trinity_GG_5141_c0_g1_i6,Trinity_GG_5141_c0_g1_i8,blat.proc3829875.chain_1712,blat.proc3829875.chain_1713	7	STRG.9313.6,blat.proc3829875.chain_1715	2
scaffold_58	retained_intron	14079	14281	-	asmbl_46564	none	blat.proc3829901.chain_3166	1	STRG.30063.1,blat.proc3829901.chain_3167	2
scaffold_8	retained_intron	8733193	8733226	+	asmbl_52010,asmbl_52013	none	STRG.10125.2,STRG.10125.3,Trinity_GG_5629_c2_g1_i4,blat.proc3829875.chain_2630,blat.proc3829875.chain_2631	5	STRG.10125.4,STRG.10125.5	2
scaffold_21	starts_in_intron	4945618	4945618	+	asmbl_28559	none	Trinity_GG_13283_c0_g1_i1,blat.proc3829883.chain_1125	2	STRG.24027.1,blat.proc3829883.chain_1124,blat.proc3829883.chain_1126	3
scaffold_9	starts_in_intron	6880549	6880549	+	asmbl_54098	none	Trinity_GG_6229_c0_g1_i2,blat.proc3829875.chain_3668	2	STRG.11188.1,blat.proc3829875.chain_3669	2
scaffold_9	starts_in_intron	11831597	11831597	-	asmbl_55286	none	STRG.11487.2	1	STRG.11487.1	1
scaffold_10	retained_intron	12069498	12070132	+	asmbl_4801	none	STRG.12834.1,blat.proc3829877.chain_1399	2	STRG.12834.2,blat.proc3829877.chain_1398	2
scaffold_6	retained_intron	15944871	15944986	+	asmbl_47619,asmbl_47620	none	STRG.8316.1,STRG.8316.3	2	blat.proc3829891.chain_588	1
scaffold_15	starts_in_intron	4967934	4967934	-	asmbl_15180	none	STRG.18194.1,blat.proc3829895.chain_2969,blat.proc3829895.chain_2972	3	STRG.18194.3	1
scaffold_13	retained_intron	2271926	2272065	-	asmbl_9399,asmbl_9403,asmbl_9404,asmbl_9405	none	Trinity_GG_25734_c0_g1_i5,blat.proc3829895.chain_308,blat.proc3829895.chain_310,blat.proc3829895.chain_312,blat.proc3829895.chain_317	5	STRG.15533.1,STRG.15533.2,STRG.15533.3,blat.proc3829895.chain_309,blat.proc3829895.chain_311,blat.proc3829895.chain_313,blat.proc3829895.chain_316	7
scaffold_22	spliced_intron	6991765	6991914	+	asmbl_29437	none	blat.proc3829883.chain_1991	1	STRG.25008.2,Trinity_GG_13798_c0_g1_i2,blat.proc3829883.chain_1990,blat.proc3829883.chain_1992	4
scaffold_26	spliced_intron	5746449	5746583	+	asmbl_35558,asmbl_35559,asmbl_35561,asmbl_35562	none	STRG.28253.1,STRG.28253.2,STRG.28253.3,blat.proc3829885.chain_1265,blat.proc3829885.chain_1266	5	Trinity_GG_15616_c0_g1_i2,blat.proc3829885.chain_1267	2
scaffold_7	alternate_exon	1231458	1231699	+	asmbl_50477	none	STRG.8627.7	1	STRG.8627.2,STRG.8627.3,STRG.8627.5,STRG.8627.6,Trinity_GG_4740_c0_g1_i15,Trinity_GG_4740_c0_g1_i16,Trinity_GG_4740_c0_g1_i17,Trinity_GG_4740_c0_g1_i21,blat.proc3829875.chain_1042,blat.proc3829875.chain_1046,blat.proc3829875.chain_1047,blat.proc3829875.chain_1052	12
scaffold_5	alt_donor	3772939	3772940	+	asmbl_43902,asmbl_43904	none	STRG.5834.3,blat.proc3829873.chain_2012	2	STRG.5834.2,blat.proc3829873.chain_2013	2
scaffold_11	alternate_exon	15833132	15833670	+	asmbl_6114	none	STRG.14312.2,Trinity_GG_7857_c2_g1_i1,blat.proc3829877.chain_2737,blat.proc3829877.chain_2739	4	STRG.14312.4	1
scaffold_14	retained_intron	1070202	1070949	+	asmbl_11762,asmbl_11765,asmbl_11769,asmbl_11770,asmbl_11773	none	STRG.16754.3,Trinity_GG_9205_c0_g1_i3,blat.proc3829879.chain_1437,blat.proc3829879.chain_1439,blat.proc3829879.chain_1440,blat.proc3829879.chain_1442	6	STRG.16754.1,STRG.16754.2,Trinity_GG_9205_c0_g1_i2,blat.proc3829879.chain_1436,blat.proc3829879.chain_1438,blat.proc3829879.chain_1441	6
scaffold_5	alternate_exon	1178703	1178770	-	asmbl_45223	none	Trinity_GG_20235_c0_g1_i1,blat.proc3829889.chain_1817	2	STRG.5661.1,STRG.5661.2	2
scaffold_22	ends_in_intron	4287584	4287584	-	asmbl_30000,asmbl_30001	none	STRG.24837.5,STRG.24837.6,Trinity_GG_30888_c2_g1_i1,blat.proc3829899.chain_1958	4	STRG.24837.1,STRG.24837.3,blat.proc3829899.chain_1953,blat.proc3829899.chain_1955,blat.proc3829899.chain_1956	5
scaffold_19	spliced_intron	12821262	12821857	-	asmbl_21757,asmbl_21759,asmbl_21760	none	STRG.22593.1,STRG.22593.3,blat.proc3829897.chain_3274,blat.proc3829897.chain_3278	4	STRG.22593.2,blat.proc3829897.chain_3275,blat.proc3829897.chain_3277,blat.proc3829897.chain_3279,blat.proc3829897.chain_3280	5
scaffold_9	spliced_intron	12831578	12831611	+	asmbl_54451	none	STRG.11596.3	1	STRG.11596.2	1
scaffold_8	retained_intron	7805215	7805311	-	asmbl_52917	none	blat.proc3829891.chain_2144	1	STRG.10090.1,blat.proc3829891.chain_2143,blat.proc3829891.chain_2145,blat.proc3829891.chain_2147	4
scaffold_16	retained_intron	8042887	8043037	+	asmbl_17167,asmbl_17170,asmbl_17171	none	STRG.19437.1,Trinity_GG_10630_c0_g1_i2,Trinity_GG_10630_c0_g1_i4,Trinity_GG_10630_c0_g1_i5,blat.proc3829881.chain_279,blat.proc3829881.chain_280,blat.proc3829881.chain_283	7	STRG.19437.2,blat.proc3829881.chain_281,blat.proc3829881.chain_282	3
scaffold_2	spliced_intron	1301947	1302080	+	asmbl_24199	none	STRG.1611.3,Trinity_GG_927_c0_g1_i2,blat.proc3829871.chain_1708	3	STRG.1611.2,Trinity_GG_927_c0_g1_i4,blat.proc3829871.chain_1709	3
scaffold_27	alt_donor	6076958	6076959	+	asmbl_36331	none	STRG.28989.2,blat.proc3829885.chain_2129	2	STRG.28989.1,Trinity_GG_16049_c1_g1_i2,blat.proc3829885.chain_2127	3
scaffold_20	retained_intron	8936755	8936837	-	asmbl_26937	none	STRG.23420.1	1	STRG.23420.2	1
scaffold_27	alt_acceptor	6198316	6198317	+	asmbl_36334,asmbl_36335,asmbl_36337	none	STRG.28993.1,STRG.28993.3,STRG.28993.5	3	STRG.28993.4	1
scaffold_12	skipped_exon	10604821	10607034	+	asmbl_8911	none	STRG.15020.3,blat.proc3829877.chain_3504	2	STRG.15020.1,STRG.15020.2,STRG.15020.4,blat.proc3829877.chain_3505,blat.proc3829877.chain_3508,blat.proc3829877.chain_3509	6
scaffold_17	spliced_intron	4186382	4186960	-	asmbl_18888	none	STRG.20157.1,blat.proc3829897.chain_1126	2	STRG.20157.2,blat.proc3829897.chain_1125	2
scaffold_12	retained_intron	12291136	12292234	-	asmbl_7985,asmbl_7986	none	STRG.15114.1,STRG.15114.3,Trinity_GG_25420_c0_g1_i5,Trinity_GG_25420_c1_g1_i1,blat.proc3829893.chain_3457,blat.proc3829893.chain_3462	6	STRG.15114.2	1
scaffold_7	spliced_intron	13015452	13015641	-	asmbl_50093,asmbl_50098	none	STRG.9408.1,blat.proc3829891.chain_1652	2	STRG.9408.2,blat.proc3829891.chain_1657	2
scaffold_3	starts_in_intron	1762638	1762638	+	asmbl_39825,asmbl_39831	none	blat.proc3829871.chain_3182,blat.proc3829871.chain_3183	2	STRG.2991.1,STRG.2991.3,blat.proc3829871.chain_3179,blat.proc3829871.chain_3180,blat.proc3829871.chain_3181,blat.proc3829871.chain_3184,blat.proc3829871.chain_3185	7
scaffold_21	alt_donor	5490734	5490735	-	asmbl_27686	none	STRG.24065.2	1	STRG.24065.1,blat.proc3829899.chain_1125,blat.proc3829899.chain_1126	3
scaffold_5	spliced_intron	16206282	16206597	+	asmbl_44717,asmbl_44719	none	STRG.6800.1,blat.proc3829873.chain_2889,blat.proc3829873.chain_2890,blat.proc3829873.chain_2891	4	blat.proc3829873.chain_2888	1
scaffold_4	alt_acceptor	15111245	15111246	+	asmbl_43264	none	STRG.5116.1	1	STRG.5116.2,blat.proc3829873.chain_1405	2
scaffold_1	retained_exon	4239799	4239871	+	asmbl_1643,asmbl_1648,asmbl_1653	none	STRG.253.3,STRG.253.4,blat.proc3829871.chain_228,blat.proc3829871.chain_232	4	STRG.253.1,blat.proc3829871.chain_225,blat.proc3829871.chain_229	3
scaffold_1	alt_acceptor	9267736	9267737	-	asmbl_536	none	STRG.623.1,blat.proc3829887.chain_487	2	STRG.623.2	1
scaffold_4	spliced_intron	19354511	19354584	-	asmbl_42185,asmbl_42188,asmbl_42190,asmbl_42191	none	STRG.5528.1,Trinity_GG_20122_c0_g1_i17,blat.proc3829889.chain_1612,blat.proc3829889.chain_1615,blat.proc3829889.chain_1617	5	Trinity_GG_20122_c0_g1_i7,blat.proc3829889.chain_1609,blat.proc3829889.chain_1613,blat.proc3829889.chain_1616	4
scaffold_14	alternate_exon	2887920	2888239	-	asmbl_12964	none	STRG.16870.2,blat.proc3829895.chain_1571	2	STRG.16870.1,STRG.16870.3,blat.proc3829895.chain_1570,blat.proc3829895.chain_1574	4
scaffold_7	retained_exon	7184876	7184992	+	asmbl_50789,asmbl_50790	none	STRG.8964.1,STRG.8964.3,blat.proc3829875.chain_1425	3	STRG.8964.2,blat.proc3829875.chain_1426	2
scaffold_4	ends_in_intron	8264264	8264264	+	asmbl_42878	none	blat.proc3829873.chain_1024	1	STRG.4651.2,blat.proc3829873.chain_1025	2
scaffold_5	alt_donor	18929540	18929541	-	asmbl_46255	none	STRG.7002.1,Trinity_GG_20903_c0_g1_i1,blat.proc3829889.chain_2972	3	STRG.7002.2	1
scaffold_19	ends_in_intron	10227754	10227754	+	asmbl_22438	none	blat.proc3829881.chain_3219	1	STRG.22390.1,blat.proc3829881.chain_3220	2
scaffold_7	ends_in_intron	16241125	16241125	+	asmbl_51352	none	blat.proc3829875.chain_1969	1	STRG.9579.1	1
scaffold_9	retained_exon	9531883	9531909	-	asmbl_55155	none	STRG.11302.1,blat.proc3829891.chain_3449	2	STRG.11302.2,blat.proc3829891.chain_3448,blat.proc3829891.chain_3450	3
scaffold_23	ends_in_intron	2027421	2027421	-	asmbl_31404	none	blat.proc3829899.chain_2727	1	STRG.25653.1,blat.proc3829899.chain_2725,blat.proc3829899.chain_2726	3
scaffold_6	spliced_intron	18911268	18911384	-	asmbl_49220	none	STRG.8552.2	1	STRG.8552.1,blat.proc3829891.chain_883,blat.proc3829891.chain_884	3
scaffold_9	alt_acceptor	13891258	13891259	-	asmbl_55418	none	STRG.11643.3	1	STRG.11643.1,STRG.11643.2,blat.proc3829893.chain_14	3
scaffold_16	retained_intron	1510638	1511404	+	asmbl_16870	none	STRG.19088.1,blat.proc3829879.chain_3698	2	STRG.19088.3	1
scaffold_6	retained_intron	3291018	3291248	+	asmbl_46772	none	blat.proc3829873.chain_3456	1	STRG.7328.1,blat.proc3829873.chain_3455	2
scaffold_11	spliced_intron	8735988	8736072	+	asmbl_5799	none	blat.proc3829877.chain_2390	1	STRG.13880.1	1
scaffold_20	retained_intron	10856589	10856956	+	asmbl_26151	none	Trinity_GG_13067_c0_g1_i1,blat.proc3829883.chain_747	2	STRG.23601.1,Trinity_GG_13067_c0_g1_i3,blat.proc3829883.chain_745,blat.proc3829883.chain_748	4
scaffold_7	alt_donor	15053529	15053530	-	asmbl_50176	none	blat.proc3829891.chain_1759	1	STRG.9515.2	1
scaffold_2	alternate_exon	2454850	2455394	-	asmbl_22922	none	blat.proc3829887.chain_1529	1	STRG.1690.2,blat.proc3829887.chain_1528	2
scaffold_6	alt_acceptor	12534659	12534660	-	asmbl_48754	none	STRG.8003.1,blat.proc3829891.chain_298	2	STRG.8003.2,STRG.8003.3,blat.proc3829891.chain_297	3
scaffold_7	alt_donor	18394645	18394646	-	asmbl_50297	none	blat.proc3829891.chain_1873	1	STRG.9659.1,STRG.9659.2,STRG.9659.3,STRG.9659.4,STRG.9659.5,Trinity_GG_22427_c0_g1_i10,Trinity_GG_22427_c0_g1_i11,blat.proc3829891.chain_1868,blat.proc3829891.chain_1869,blat.proc3829891.chain_1870,blat.proc3829891.chain_1871,blat.proc3829891.chain_1875	12
scaffold_5	spliced_intron	10853540	10853712	+	asmbl_44366,asmbl_44368,asmbl_44370,asmbl_44371,asmbl_44372,asmbl_44374	none	STRG.6350.1,STRG.6350.3,blat.proc3829873.chain_2511,blat.proc3829873.chain_2512,blat.proc3829873.chain_2513,blat.proc3829873.chain_2515,blat.proc3829873.chain_2516	7	STRG.6350.4,blat.proc3829873.chain_2514	2
scaffold_9	spliced_intron	9736024	9736448	+	asmbl_54227,asmbl_54231	none	STRG.11341.4,blat.proc3829877.chain_145,blat.proc3829877.chain_151,blat.proc3829877.chain_153	4	STRG.11341.3,STRG.11341.5,blat.proc3829877.chain_148,blat.proc3829877.chain_150,blat.proc3829877.chain_152	5
scaffold_24	alt_acceptor	6310227	6310228	+	asmbl_32310,asmbl_32311	none	STRG.26676.1,STRG.26676.4	2	STRG.26676.2,blat.proc3829883.chain_3587	2
scaffold_9	retained_intron	15384227	15384899	+	asmbl_54540	none	blat.proc3829877.chain_492	1	STRG.11728.2,blat.proc3829877.chain_488,blat.proc3829877.chain_489,blat.proc3829877.chain_491	4
scaffold_22	retained_exon	5985018	5985087	-	asmbl_30067	none	STRG.24932.3	1	STRG.24932.2	1
scaffold_7	starts_in_intron	17808113	17808113	+	asmbl_51386,asmbl_51387	none	blat.proc3829875.chain_2097,blat.proc3829875.chain_2100	2	STRG.9616.1,blat.proc3829875.chain_2098,blat.proc3829875.chain_2099,blat.proc3829875.chain_2102,blat.proc3829875.chain_2103,blat.proc3829875.chain_2105	6
scaffold_6	alt_donor	16877083	16877084	-	asmbl_49104	none	STRG.8397.3,blat.proc3829891.chain_723	2	STRG.8397.2,blat.proc3829891.chain_722	2
scaffold_13	alternate_exon	11379298	11380113	-	asmbl_10047	none	Trinity_GG_26140_c0_g1_i11,blat.proc3829895.chain_1032	2	STRG.16287.6,Trinity_GG_26140_c0_g1_i2,blat.proc3829895.chain_1027	3
scaffold_23	retained_intron	10975035	10975280	+	asmbl_31184,asmbl_31198	none	STRG.26281.3,blat.proc3829883.chain_3196	2	STRG.26281.1,STRG.26281.2,Trinity_GG_14524_c0_g1_i13,Trinity_GG_14524_c0_g1_i8,blat.proc3829883.chain_3193,blat.proc3829883.chain_3194,blat.proc3829883.chain_3195,blat.proc3829883.chain_3198,blat.proc3829883.chain_3199,blat.proc3829883.chain_3200,blat.proc3829883.chain_3203	11
scaffold_6	alt_donor	5195631	5195632	+	asmbl_46863,asmbl_46864,asmbl_46865,asmbl_46868	none	STRG.7489.2,STRG.7489.3,STRG.7489.4,Trinity_GG_4091_c0_g1_i10,blat.proc3829873.chain_3581,blat.proc3829873.chain_3585,blat.proc3829873.chain_3587	7	blat.proc3829873.chain_3583	1
scaffold_1	retained_intron	5206637	5207244	+	asmbl_1702,asmbl_1703	none	STRG.323.1,STRG.323.3,blat.proc3829871.chain_392,blat.proc3829871.chain_399,blat.proc3829871.chain_401	5	STRG.323.2,blat.proc3829871.chain_396,blat.proc3829871.chain_397,blat.proc3829871.chain_398	4
scaffold_12	starts_in_intron	5091267	5091267	-	asmbl_7612	none	blat.proc3829893.chain_2966	1	STRG.14671.1,blat.proc3829893.chain_2968,blat.proc3829893.chain_2969	3
scaffold_66	starts_in_intron	1701	1701	+	asmbl_49443	none	blat.proc3829885.chain_3140	1	STRG.30074.1	1
scaffold_24	retained_intron	879811	879831	+	asmbl_32061	none	STRG.26351.1,blat.proc3829883.chain_3323	2	STRG.26351.3	1
scaffold_15	alt_donor	15189220	15189221	+	asmbl_14691	none	STRG.18906.3	1	STRG.18906.2	1
scaffold_13	spliced_intron	5822786	5823442	+	asmbl_10880,asmbl_10882,asmbl_10884	none	STRG.15880.1,STRG.15880.4,Trinity_GG_8766_c0_g1_i8,blat.proc3829879.chain_641	4	STRG.15880.3	1
scaffold_10	alternate_exon	13472425	13472520	-	asmbl_3790	none	STRG.12931.2,blat.proc3829893.chain_1418	2	STRG.12931.3	1
scaffold_3	skipped_exon	10628826	10630201	+	asmbl_40234	none	blat.proc3829871.chain_3607	1	STRG.3509.2,STRG.3509.3,blat.proc3829871.chain_3604,blat.proc3829871.chain_3605,blat.proc3829871.chain_3606	5
scaffold_2	alt_donor	2292584	2292585	-	asmbl_22908	none	STRG.1671.1	1	STRG.1671.2	1
scaffold_3	retained_exon	14513521	14513808	-	asmbl_39333	none	STRG.3790.2	1	STRG.3790.3,Trinity_GG_19112_c0_g1_i1,blat.proc3829887.chain_3597	3
scaffold_14	alt_donor	10000180	10000181	-	asmbl_13380,asmbl_13381,asmbl_13384,asmbl_13385	none	STRG.17356.1,STRG.17356.2,Trinity_GG_26738_c0_g1_i1,blat.proc3829895.chain_2059,blat.proc3829895.chain_2061,blat.proc3829895.chain_2062,blat.proc3829895.chain_2063	7	blat.proc3829895.chain_2060	1
scaffold_9	retained_intron	9643517	9643587	+	asmbl_54199	none	blat.proc3829877.chain_83	1	STRG.11323.1,blat.proc3829877.chain_84	2
scaffold_25	alt_donor	1440431	1440432	+	asmbl_33369,asmbl_33370	none	STRG.27161.2,blat.proc3829885.chain_228	2	STRG.27161.1	1
scaffold_5	skipped_exon	15703621	15706084	+	asmbl_44672,asmbl_44675	none	STRG.6756.1,blat.proc3829873.chain_2831,blat.proc3829873.chain_2832	3	STRG.6756.2	1
scaffold_3	retained_intron	9518813	9518999	+	asmbl_40184	none	Trinity_GG_1959_c0_g1_i2,Trinity_GG_1959_c0_g1_i3,blat.proc3829871.chain_3637,blat.proc3829871.chain_3638	4	STRG.3434.1,STRG.3434.2,Trinity_GG_1959_c0_g1_i1,blat.proc3829871.chain_3639,blat.proc3829871.chain_3641	5
scaffold_6	spliced_intron	16387153	16387269	+	asmbl_47633	none	STRG.8360.2,Trinity_GG_4584_c0_g1_i1,blat.proc3829875.chain_735	3	STRG.8360.1,Trinity_GG_4584_c0_g1_i2,blat.proc3829875.chain_734	3
scaffold_2	alt_donor	9197481	9197482	+	asmbl_24711	none	STRG.2168.1	1	STRG.2168.2,Trinity_GG_1194_c0_g1_i2,blat.proc3829871.chain_2227	3
scaffold_12	alt_donor	6423310	6423311	-	asmbl_7665,asmbl_7666,asmbl_7667	none	STRG.14731.1,STRG.14731.2,blat.proc3829893.chain_3149,blat.proc3829893.chain_3150,blat.proc3829893.chain_3151	5	STRG.14731.3,STRG.14731.4	2
scaffold_8	spliced_intron	11852296	11852549	+	asmbl_52267,asmbl_52269,asmbl_52270,asmbl_52271,asmbl_52272,asmbl_52273,asmbl_52274,asmbl_52276,asmbl_52277,asmbl_52278,asmbl_52279,asmbl_52280,asmbl_52281,asmbl_52282,asmbl_52283,asmbl_52284	none	STRG.10382.2,STRG.10382.3,STRG.10382.4,blat.proc3829875.chain_2966,blat.proc3829875.chain_2967,blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2970,blat.proc3829875.chain_2971,blat.proc3829875.chain_2972,blat.proc3829875.chain_2973,blat.proc3829875.chain_2975,blat.proc3829875.chain_2976,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978,blat.proc3829875.chain_2979,blat.proc3829875.chain_2980,blat.proc3829875.chain_2981	18	Trinity_GG_5824_c3_g1_i1,blat.proc3829875.chain_2984	2
scaffold_5	alt_acceptor	187040	187041	+	asmbl_43748	none	STRG.5581.2	1	STRG.5581.1,STRG.5581.3,STRG.5581.4	3
scaffold_13	starts_in_intron	361995	361995	-	asmbl_9277	none	STRG.15426.2,blat.proc3829895.chain_166	2	STRG.15426.1,STRG.15426.3,STRG.15426.4,STRG.15426.5,Trinity_GG_25666_c0_g1_i10,Trinity_GG_25666_c0_g1_i11,Trinity_GG_25666_c0_g1_i14,Trinity_GG_25666_c0_g1_i3,Trinity_GG_25666_c0_g1_i6,Trinity_GG_25666_c0_g1_i8,blat.proc3829895.chain_155,blat.proc3829895.chain_156,blat.proc3829895.chain_159,blat.proc3829895.chain_161,blat.proc3829895.chain_163,blat.proc3829895.chain_165	16
scaffold_17	alt_acceptor	7009176	7009177	-	asmbl_19058	none	STRG.20351.1,blat.proc3829897.chain_1273,blat.proc3829897.chain_1274	3	STRG.20351.2	1
scaffold_17	alternate_exon	8569807	8569990	+	asmbl_18126	none	STRG.20457.1,Trinity_GG_11208_c0_g1_i1	2	STRG.20457.2,blat.proc3829881.chain_1242	2
scaffold_19	spliced_intron	12107338	12107555	-	asmbl_21668	none	STRG.22526.4,blat.proc3829897.chain_3209	2	STRG.22526.2,blat.proc3829897.chain_3212	2
scaffold_1	retained_intron	16751465	16751493	-	asmbl_1016	none	STRG.1176.1,blat.proc3829887.chain_1008	2	STRG.1176.2	1
scaffold_19	alt_acceptor	13742672	13742673	+	asmbl_22694	none	STRG.22674.2,Trinity_GG_12521_c0_g1_i2,blat.proc3829881.chain_3606	3	STRG.22674.1,Trinity_GG_12521_c0_g1_i3,blat.proc3829881.chain_3605	3
scaffold_21	alt_acceptor	755621	755622	+	asmbl_28325	none	STRG.23758.2	1	STRG.23758.1,Trinity_GG_13120_c0_g1_i2,blat.proc3829883.chain_837,blat.proc3829883.chain_838	4
scaffold_22	spliced_intron	31144	31291	+	asmbl_29096	none	STRG.24649.2,blat.proc3829883.chain_1669	2	STRG.24649.1,blat.proc3829883.chain_1668	2
scaffold_8	retained_intron	6028690	6028824	+	asmbl_51911	none	blat.proc3829875.chain_2552	1	Trinity_GG_5590_c1_g1_i6,blat.proc3829875.chain_2551,blat.proc3829875.chain_2553,blat.proc3829875.chain_2554,blat.proc3829875.chain_2555	5
scaffold_17	alternate_exon	11036022	11036188	-	asmbl_19312	none	STRG.20653.1	1	STRG.20653.2,STRG.20653.3,blat.proc3829897.chain_1607	3
scaffold_4	alt_donor	6602063	6602064	+	asmbl_42744,asmbl_42747,asmbl_42748	none	STRG.4520.1,STRG.4520.2,blat.proc3829873.chain_857,blat.proc3829873.chain_860	4	blat.proc3829873.chain_858	1
scaffold_4	starts_in_intron	15383206	15383206	-	asmbl_41845	none	blat.proc3829889.chain_1144	1	STRG.5132.1,blat.proc3829889.chain_1145	2
scaffold_11	retained_intron	14794936	14794956	+	asmbl_6080	none	Trinity_GG_7858_c0_g1_i2	1	STRG.14247.1	1
scaffold_9	starts_in_intron	9471976	9471976	-	asmbl_55145,asmbl_55147,asmbl_55150	none	STRG.11298.2,blat.proc3829891.chain_3464,blat.proc3829891.chain_3466	3	STRG.11298.1,STRG.11298.3,blat.proc3829891.chain_3465	3
scaffold_25	ends_in_intron	3275074	3275074	+	asmbl_33410	none	blat.proc3829885.chain_293	1	STRG.27254.1,blat.proc3829885.chain_292	2
scaffold_1	retained_intron	857694	857888	-	asmbl_25	none	STRG.43.2,blat.proc3829885.chain_3699	2	STRG.43.1,blat.proc3829885.chain_3698,blat.proc3829885.chain_3700	3
scaffold_17	skipped_exon	1665159	1667659	+	asmbl_17750	none	STRG.19985.2,blat.proc3829881.chain_827	2	STRG.19985.1,blat.proc3829881.chain_825,blat.proc3829881.chain_826	3
scaffold_18	retained_intron	4768861	4768995	+	asmbl_20585,asmbl_20591	none	STRG.21260.1,STRG.21260.5,Trinity_GG_11674_c0_g1_i1,blat.proc3829881.chain_2085,blat.proc3829881.chain_2088	5	STRG.21260.2,STRG.21260.3,blat.proc3829881.chain_2087	3
scaffold_22	starts_in_intron	4359086	4359086	+	asmbl_29282	none	blat.proc3829883.chain_1878	1	STRG.24841.1,STRG.24841.2,STRG.24841.3,blat.proc3829883.chain_1877,blat.proc3829883.chain_1879,blat.proc3829883.chain_1880,blat.proc3829883.chain_1882	7
scaffold_17	spliced_intron	8317665	8317809	+	asmbl_18094,asmbl_18095,asmbl_18098	none	STRG.20443.2,STRG.20443.3,blat.proc3829881.chain_1250	3	STRG.20443.1,blat.proc3829881.chain_1253	2
scaffold_2	alt_acceptor	19774047	19774048	+	asmbl_25318,asmbl_25319,asmbl_25321,asmbl_25322	none	STRG.2825.1,STRG.2825.2,blat.proc3829871.chain_2982,blat.proc3829871.chain_2983,blat.proc3829871.chain_2985	5	blat.proc3829871.chain_2984	1
scaffold_5	retained_exon	14680362	14680453	+	asmbl_44622	none	STRG.6663.1,Trinity_GG_3607_c0_g1_i4,blat.proc3829873.chain_2739	3	STRG.6663.2,Trinity_GG_3607_c0_g1_i1,blat.proc3829873.chain_2740	3
scaffold_2	retained_intron	17656069	17656578	-	asmbl_23747	none	STRG.2658.1,blat.proc3829887.chain_2489	2	blat.proc3829887.chain_2490	1
scaffold_22	alt_acceptor	6957798	6957799	-	asmbl_30116,asmbl_30117,asmbl_30119	none	STRG.25002.1,STRG.25002.2,STRG.25002.5,blat.proc3829899.chain_2085	4	STRG.25002.3,blat.proc3829899.chain_2086	2
scaffold_14	retained_intron	399142	399238	+	asmbl_11722	none	STRG.16722.3	1	STRG.16722.1,blat.proc3829879.chain_1464,blat.proc3829879.chain_1470,blat.proc3829879.chain_1473	4
scaffold_11	ends_in_intron	8313076	8313076	+	asmbl_5711	none	Trinity_GG_7561_c2_g1_i1,blat.proc3829877.chain_2214	2	STRG.13834.1,blat.proc3829877.chain_2211,blat.proc3829877.chain_2212	3
scaffold_18	spliced_intron	8436469	8436543	-	asmbl_20046	none	STRG.21514.1,Trinity_GG_29005_c0_g1_i2,blat.proc3829897.chain_2280	3	STRG.21514.2,STRG.21514.3,blat.proc3829897.chain_2281	3
scaffold_23	retained_intron	6633740	6633978	+	asmbl_30932	none	blat.proc3829883.chain_2815	1	STRG.25985.1,STRG.25985.2,blat.proc3829883.chain_2811,blat.proc3829883.chain_2812,blat.proc3829883.chain_2813,blat.proc3829883.chain_2814,blat.proc3829883.chain_2816,blat.proc3829883.chain_2817	8
scaffold_28	spliced_intron	5228162	5228266	-	asmbl_37581,asmbl_37584	none	STRG.29650.1,blat.proc3829901.chain_2671,blat.proc3829901.chain_2673	3	blat.proc3829901.chain_2677	1
scaffold_6	alternate_exon	3793008	3793461	+	asmbl_46802	none	STRG.7371.1,blat.proc3829873.chain_3488	2	STRG.7371.2,blat.proc3829873.chain_3489	2
scaffold_23	spliced_intron	248951	249926	-	asmbl_31290	none	STRG.25528.3,blat.proc3829899.chain_2629	2	STRG.25528.1,blat.proc3829899.chain_2628	2
scaffold_17	retained_exon	5323681	5323701	+	asmbl_17945	none	STRG.20241.2	1	STRG.20241.1,blat.proc3829881.chain_959	2
scaffold_15	skipped_exon	9723365	9725629	+	asmbl_14349	none	STRG.18476.2	1	STRG.18476.1,blat.proc3829879.chain_3079,blat.proc3829879.chain_3080	3
scaffold_16	retained_intron	151929	152211	-	asmbl_16002	none	Trinity_GG_27691_c0_g1_i3,blat.proc3829897.chain_66	2	STRG.19000.1,Trinity_GG_27691_c0_g1_i4,Trinity_GG_27691_c0_g1_i7,Trinity_GG_27691_c0_g1_i8,blat.proc3829897.chain_69	5
scaffold_8	retained_intron	11810388	11810529	+	asmbl_52258	none	blat.proc3829875.chain_2928	1	STRG.10378.1,blat.proc3829875.chain_2926,blat.proc3829875.chain_2927	3
scaffold_5	retained_intron	16937471	16937586	-	asmbl_46164	none	blat.proc3829889.chain_2911	1	STRG.6865.1,blat.proc3829889.chain_2909,blat.proc3829889.chain_2910	3
scaffold_5	retained_intron	14732107	14732244	-	asmbl_45997	none	blat.proc3829889.chain_2716	1	STRG.6667.1,blat.proc3829889.chain_2713	2
scaffold_23	spliced_intron	6778984	6779031	+	asmbl_30950	none	STRG.25993.1	1	Trinity_GG_14348_c0_g1_i1	1
scaffold_4	alt_acceptor	6246838	6246839	+	asmbl_42710	none	STRG.4494.3,blat.proc3829873.chain_839	2	STRG.4494.1,STRG.4494.2,blat.proc3829873.chain_841	3
scaffold_10	alt_acceptor	8905456	8905457	-	asmbl_3550	none	STRG.12626.1	1	STRG.12626.2	1
scaffold_2	skipped_exon	801491	802473	+	asmbl_24128	none	STRG.1558.1	1	Trinity_GG_875_c1_g1_i1,blat.proc3829871.chain_1575,blat.proc3829871.chain_1576	3
scaffold_12	spliced_intron	4984474	4984577	+	asmbl_8593	none	blat.proc3829877.chain_3085	1	blat.proc3829877.chain_3083	1
scaffold_7	alt_donor	8398829	8398830	+	asmbl_50879	none	STRG.9064.2	1	STRG.9064.1	1
scaffold_5	retained_intron	7708243	7708325	+	asmbl_44162,asmbl_44164,asmbl_44165	none	STRG.6139.1,STRG.6139.2,blat.proc3829873.chain_2297,blat.proc3829873.chain_2298	4	Trinity_GG_3357_c0_g1_i3,blat.proc3829873.chain_2299	2
scaffold_7	alt_acceptor	16131757	16131758	-	asmbl_50219	none	STRG.9563.2,Trinity_GG_22388_c0_g1_i1,blat.proc3829891.chain_1802	3	STRG.9563.1,Trinity_GG_22388_c0_g1_i2,blat.proc3829891.chain_1801	3
scaffold_1	retained_intron	15304128	15304231	+	asmbl_2421	none	Trinity_GG_640_c0_g1_i3,blat.proc3829871.chain_1164	2	STRG.1093.1,Trinity_GG_640_c0_g1_i1,Trinity_GG_640_c0_g1_i2,blat.proc3829871.chain_1163,blat.proc3829871.chain_1165	5
scaffold_11	retained_exon	4672820	4673002	-	asmbl_6586,asmbl_6590	none	STRG.13547.1,STRG.13547.4,blat.proc3829893.chain_1973	3	STRG.13547.2,STRG.13547.3,STRG.13547.5,blat.proc3829893.chain_1970,blat.proc3829893.chain_1971,blat.proc3829893.chain_1972	6
scaffold_6	alt_acceptor	78358	78359	-	asmbl_47965	none	STRG.7058.2	1	STRG.7058.1,STRG.7058.3,STRG.7058.4	3
scaffold_13	retained_intron	517905	518333	+	asmbl_10457	none	STRG.15434.1,blat.proc3829879.chain_114	2	STRG.15434.4,STRG.15434.5	2
scaffold_22	alt_donor	7968284	7968285	+	asmbl_29537	none	STRG.25132.2	1	STRG.25132.1,blat.proc3829883.chain_2194	2
scaffold_27	retained_intron	3024966	3025670	+	asmbl_36134	none	blat.proc3829885.chain_1780	1	blat.proc3829885.chain_1779	1
scaffold_26	skipped_exon	9843220	9843548	+	asmbl_35811,asmbl_35813,asmbl_35816	none	STRG.28526.2,blat.proc3829885.chain_1563,blat.proc3829885.chain_1565	3	STRG.28526.1,STRG.28526.3,STRG.28526.5,blat.proc3829885.chain_1556,blat.proc3829885.chain_1557,blat.proc3829885.chain_1558,blat.proc3829885.chain_1559,blat.proc3829885.chain_1560,blat.proc3829885.chain_1561,blat.proc3829885.chain_1562,blat.proc3829885.chain_1564,blat.proc3829885.chain_1567	12
scaffold_25	retained_intron	5776337	5776529	+	asmbl_33577,asmbl_33580	none	STRG.27456.1,blat.proc3829885.chain_510	2	STRG.27456.2	1
scaffold_13	starts_in_intron	362973	362973	-	asmbl_9284	none	blat.proc3829895.chain_163	1	STRG.15426.1,STRG.15426.3,STRG.15426.4,STRG.15426.5,Trinity_GG_25666_c0_g1_i10,Trinity_GG_25666_c0_g1_i11,Trinity_GG_25666_c0_g1_i3,Trinity_GG_25666_c0_g1_i6,Trinity_GG_25666_c0_g1_i8,blat.proc3829895.chain_155,blat.proc3829895.chain_156,blat.proc3829895.chain_159,blat.proc3829895.chain_161,blat.proc3829895.chain_165	14
scaffold_11	retained_intron	1983288	1983379	-	asmbl_6441	none	blat.proc3829893.chain_1817	1	STRG.13349.1,STRG.13349.2,blat.proc3829893.chain_1815,blat.proc3829893.chain_1816	4
scaffold_24	spliced_intron	6834417	6834757	+	asmbl_32354,asmbl_32356,asmbl_32358	none	STRG.26717.1,STRG.26717.2,STRG.26717.4,blat.proc3829883.chain_3660,blat.proc3829883.chain_3661	5	blat.proc3829883.chain_3662	1
scaffold_21	starts_in_intron	2526500	2526500	-	asmbl_27501	none	STRG.23870.2	1	STRG.23870.1,blat.proc3829899.chain_955,blat.proc3829899.chain_957	3
scaffold_3	retained_exon	6043347	6043728	-	asmbl_38836	none	STRG.3255.5	1	STRG.3255.2,STRG.3255.7	2
scaffold_24	alt_donor	6297543	6297544	+	asmbl_32308	none	STRG.26668.1,Trinity_GG_14747_c0_g1_i1,blat.proc3829883.chain_3577	3	STRG.26668.2,Trinity_GG_14747_c0_g1_i2,blat.proc3829883.chain_3578	3
scaffold_7	alt_acceptor	17339105	17339106	-	asmbl_50245,asmbl_50246	none	STRG.9603.1,STRG.9603.3	2	STRG.9603.2	1
scaffold_24	starts_in_intron	10596013	10596013	-	asmbl_33202	none	Trinity_GG_32124_c1_g1_i1	1	STRG.26998.1,blat.proc3829901.chain_311,blat.proc3829901.chain_312	3
scaffold_18	starts_in_intron	7467024	7467024	+	asmbl_20772	none	Trinity_GG_11828_c0_g1_i1,blat.proc3829881.chain_2381	2	STRG.21429.1	1
scaffold_15	starts_in_intron	12749276	12749276	+	asmbl_14542,asmbl_14548	none	STRG.18731.6,Trinity_GG_10289_c0_g2_i1,blat.proc3829879.chain_3354	3	STRG.18731.1,STRG.18731.2,STRG.18731.3,STRG.18731.4,blat.proc3829879.chain_3350,blat.proc3829879.chain_3351,blat.proc3829879.chain_3352,blat.proc3829879.chain_3353	8
scaffold_11	retained_exon	3768626	3768939	-	asmbl_6555	none	STRG.13488.4	1	STRG.13488.1,STRG.13488.3,blat.proc3829893.chain_1962	3
scaffold_4	starts_in_intron	1612355	1612355	+	asmbl_42440	none	Trinity_GG_2323_c0_g1_i2,blat.proc3829873.chain_528	2	STRG.4189.1,blat.proc3829873.chain_527	2
scaffold_11	alternate_exon	2299369	2299400	-	asmbl_6469	none	STRG.13380.1,blat.proc3829893.chain_1835	2	STRG.13380.2,blat.proc3829893.chain_1834	2
scaffold_15	alternate_exon	9985944	9985998	+	asmbl_14381	none	STRG.18500.2,Trinity_GG_10157_c1_g1_i1,blat.proc3829879.chain_3124	3	STRG.18500.1,Trinity_GG_10157_c1_g1_i2,blat.proc3829879.chain_3123	3
scaffold_11	spliced_intron	6395847	6395959	-	asmbl_6683,asmbl_6685	none	STRG.13685.2,STRG.13685.4,Trinity_GG_24659_c0_g1_i3,blat.proc3829893.chain_2113	4	STRG.13685.1,STRG.13685.3,Trinity_GG_24659_c0_g1_i2,blat.proc3829893.chain_2111	4
scaffold_9	ends_in_intron	9657515	9657515	+	asmbl_54210	none	blat.proc3829877.chain_101	1	STRG.11332.1,STRG.11332.2,blat.proc3829877.chain_100,blat.proc3829877.chain_98,blat.proc3829877.chain_99	5
scaffold_1	starts_in_intron	11776260	11776260	-	asmbl_672	none	blat.proc3829887.chain_683	1	STRG.796.1,blat.proc3829887.chain_684	2
scaffold_9	spliced_intron	12012157	12012204	+	asmbl_54390	none	STRG.11515.1	1	Trinity_GG_6412_c0_g1_i2,blat.proc3829877.chain_266	2
scaffold_3	alternate_exon	6032281	6050043	-	asmbl_38837	none	STRG.3255.7	1	blat.proc3829887.chain_3058	1
scaffold_11	alt_donor	11785553	11785554	+	asmbl_5964,asmbl_5965	none	STRG.14087.4,STRG.14087.5	2	STRG.14087.2	1
scaffold_28	alternate_exon	4202546	4203362	+	asmbl_38215	none	STRG.29593.1	1	STRG.29593.4,STRG.29593.5,Trinity_GG_16421_c1_g1_i1,blat.proc3829885.chain_2724,blat.proc3829885.chain_2729	5
scaffold_13	spliced_intron	7655418	7655568	+	asmbl_11046,asmbl_11048,asmbl_11049	none	STRG.16039.1,blat.proc3829879.chain_775,blat.proc3829879.chain_780,blat.proc3829879.chain_781	4	Trinity_GG_8822_c0_g1_i6,blat.proc3829879.chain_777,blat.proc3829879.chain_779	3
scaffold_16	starts_in_intron	11336959	11336959	+	asmbl_17386	none	STRG.19652.6	1	STRG.19652.1,STRG.19652.2,STRG.19652.4,STRG.19652.5,blat.proc3829881.chain_553,blat.proc3829881.chain_554,blat.proc3829881.chain_555	7
scaffold_12	alt_donor	14989687	14989688	-	asmbl_8155	none	STRG.15282.3,Trinity_GG_25571_c0_g1_i2,Trinity_GG_25571_c0_g1_i3,blat.proc3829893.chain_3740,blat.proc3829893.chain_3743	5	STRG.15282.1,STRG.15282.4,Trinity_GG_25571_c0_g1_i1,blat.proc3829893.chain_3742	4
scaffold_6	alt_acceptor	7515546	7515547	-	asmbl_48434,asmbl_48435,asmbl_48436	none	STRG.7647.1,STRG.7647.2,blat.proc3829889.chain_3680,blat.proc3829889.chain_3681,blat.proc3829889.chain_3684	5	STRG.7647.3,STRG.7647.4,Trinity_GG_21346_c0_g1_i3,blat.proc3829889.chain_3682	4
scaffold_13	retained_exon	11381832	11381855	-	asmbl_10043,asmbl_10053,asmbl_10054	none	STRG.16287.2,STRG.16287.7,Trinity_GG_26140_c0_g1_i4,Trinity_GG_26140_c0_g1_i5,blat.proc3829895.chain_1024,blat.proc3829895.chain_1026	6	STRG.16287.3,STRG.16287.5,Trinity_GG_26140_c0_g1_i1,Trinity_GG_26140_c0_g1_i3,blat.proc3829895.chain_1028,blat.proc3829895.chain_1033	6
scaffold_6	ends_in_intron	3343793	3343793	+	asmbl_46780	none	blat.proc3829873.chain_3367	1	STRG.7335.1,blat.proc3829873.chain_3366	2
scaffold_10	alt_acceptor	9344983	9344984	-	asmbl_3590	none	STRG.12660.2	1	STRG.12660.1,STRG.12660.3,Trinity_GG_24065_c0_g1_i1,blat.proc3829893.chain_1119	4
scaffold_13	starts_in_intron	1325007	1325007	+	asmbl_10530	none	Trinity_GG_8542_c0_g1_i2,blat.proc3829879.chain_236	2	STRG.15490.2,blat.proc3829879.chain_237	2
scaffold_3	spliced_intron	7593502	7593776	+	asmbl_40128	none	Trinity_GG_1911_c0_g1_i2,blat.proc3829871.chain_3545	2	blat.proc3829871.chain_3549	1
scaffold_10	starts_in_intron	352808	352808	-	asmbl_2861	none	STRG.11912.1,blat.proc3829893.chain_349	2	STRG.11912.2,blat.proc3829893.chain_347	2
scaffold_14	retained_intron	5451274	5451514	+	asmbl_11992	none	Trinity_GG_9352_c0_g1_i1,blat.proc3829879.chain_1725	2	Trinity_GG_9352_c0_g1_i3,blat.proc3829879.chain_1727	2
scaffold_27	alternate_exon	2820674	2821233	+	asmbl_36081	none	STRG.28742.4	1	STRG.28742.1,blat.proc3829885.chain_1799,blat.proc3829885.chain_1801	3
scaffold_3	alt_acceptor	11270185	11270186	+	asmbl_40287	none	STRG.3548.2,Trinity_GG_2012_c0_g1_i3,blat.proc3829871.chain_3731	3	STRG.3548.1,Trinity_GG_2012_c0_g1_i2,blat.proc3829871.chain_3732	3
scaffold_19	alternate_exon	3175240	3175313	-	asmbl_21293	none	STRG.21989.2,blat.proc3829897.chain_2749	2	STRG.21989.1,Trinity_GG_29272_c0_g1_i1	2
scaffold_1	starts_in_intron	11177826	11177826	+	asmbl_2070	none	blat.proc3829871.chain_823	1	STRG.743.1,STRG.743.2,STRG.743.3,STRG.743.4,STRG.743.5,blat.proc3829871.chain_815,blat.proc3829871.chain_817,blat.proc3829871.chain_819,blat.proc3829871.chain_820,blat.proc3829871.chain_821,blat.proc3829871.chain_822,blat.proc3829871.chain_824,blat.proc3829871.chain_825	13
scaffold_24	alternate_exon	10331251	10331331	+	asmbl_32558	none	STRG.26974.2	1	STRG.26974.1,blat.proc3829885.chain_10,blat.proc3829885.chain_11	3
scaffold_24	ends_in_intron	446383	446383	+	asmbl_32026	none	Trinity_GG_14559_c0_g1_i4,blat.proc3829883.chain_3261	2	STRG.26319.1,Trinity_GG_14559_c0_g1_i1,Trinity_GG_14559_c0_g1_i8,blat.proc3829883.chain_3262,blat.proc3829883.chain_3263	5
scaffold_2	spliced_intron	14561522	14561619	+	asmbl_24982,asmbl_24983,asmbl_24984,asmbl_24985,asmbl_24986,asmbl_24987,asmbl_24989	none	STRG.2454.1,STRG.2454.2,STRG.2454.3,STRG.2454.4,STRG.2454.5,blat.proc3829871.chain_2565,blat.proc3829871.chain_2570	7	Trinity_GG_1360_c0_g2_i1,blat.proc3829871.chain_2571	2
scaffold_27	alt_acceptor	1972145	1972146	-	asmbl_36748	none	STRG.28657.2	1	STRG.28657.1,blat.proc3829901.chain_1842	2
scaffold_94	alt_acceptor	8242	8243	-	asmbl_55802	none	STRG.30111.1,blat.proc3829901.chain_3218	2	STRG.30111.2,blat.proc3829901.chain_3665	2
scaffold_26	retained_exon	6704291	6704368	-	asmbl_34970,asmbl_34971,asmbl_34975	none	STRG.28358.1,STRG.28358.2,blat.proc3829901.chain_1521,blat.proc3829901.chain_1524	4	STRG.28358.3	1
scaffold_10	alternate_exon	5548180	5548255	+	asmbl_4464	none	STRG.12366.2,blat.proc3829877.chain_1011	2	STRG.12366.1,blat.proc3829877.chain_1012	2
scaffold_16	alternate_exon	8589188	8592471	+	asmbl_17209,asmbl_17212,asmbl_17218,asmbl_17219,asmbl_17221	none	STRG.19477.1,STRG.19477.3,STRG.19477.7,STRG.19477.8,blat.proc3829881.chain_353,blat.proc3829881.chain_354,blat.proc3829881.chain_359	7	STRG.19477.5	1
scaffold_2	ends_in_intron	15865135	15865135	+	asmbl_25104	none	blat.proc3829871.chain_2734	1	STRG.2536.1,blat.proc3829871.chain_2736	2
scaffold_3	ends_in_intron	11443129	11443129	-	asmbl_39117	none	Trinity_GG_18959_c0_g1_i2,blat.proc3829887.chain_3340	2	STRG.3571.1	1
scaffold_11	alt_acceptor	9717616	9717617	-	asmbl_6938	none	Trinity_GG_24826_c0_g1_i1,blat.proc3829893.chain_2405	2	STRG.13975.1,blat.proc3829893.chain_2407	2
scaffold_19	alt_acceptor	11168938	11168939	+	asmbl_22476	none	blat.proc3829881.chain_3334	1	STRG.22441.1,blat.proc3829881.chain_3333	2
scaffold_13	spliced_intron	6852392	6852680	+	asmbl_10972,asmbl_10974	none	STRG.15962.1,blat.proc3829879.chain_671,blat.proc3829879.chain_672	3	STRG.15962.2,blat.proc3829879.chain_673	2
scaffold_24	spliced_intron	5939387	5939564	+	asmbl_32262,asmbl_32270,asmbl_32278,asmbl_32279,asmbl_32280,asmbl_32281,asmbl_32282,asmbl_32283	none	STRG.26645.1,blat.proc3829883.chain_3535,blat.proc3829883.chain_3537,blat.proc3829883.chain_3542,blat.proc3829883.chain_3543,blat.proc3829883.chain_3545,blat.proc3829883.chain_3547,blat.proc3829883.chain_3548	8	Trinity_GG_14738_c0_g2_i1,blat.proc3829883.chain_3544,blat.proc3829883.chain_3550	3
scaffold_25	alt_donor	9337633	9337634	+	asmbl_33798	none	blat.proc3829885.chain_775	1	STRG.27743.1,blat.proc3829885.chain_770,blat.proc3829885.chain_773	3
scaffold_1	retained_intron	12453468	12453687	+	asmbl_2209	none	STRG.857.2,Trinity_GG_527_c0_g1_i3,blat.proc3829871.chain_948	3	STRG.857.1,blat.proc3829871.chain_949,blat.proc3829871.chain_950	3
scaffold_16	alt_acceptor	14489319	14489320	+	asmbl_17484,asmbl_17485	none	STRG.19814.2,blat.proc3829881.chain_701	2	STRG.19814.1,blat.proc3829881.chain_700,blat.proc3829881.chain_702	3
scaffold_12	alt_donor	7430569	7430570	+	asmbl_8721	none	STRG.14810.2	1	STRG.14810.1,Trinity_GG_8184_c0_g1_i1,Trinity_GG_8184_c0_g1_i2,blat.proc3829877.chain_3305,blat.proc3829877.chain_3306	5
scaffold_19	starts_in_intron	6685928	6685928	+	asmbl_22238	none	blat.proc3829881.chain_3047	1	STRG.22182.1,Trinity_GG_12219_c0_g1_i3,blat.proc3829881.chain_3046	3
scaffold_5	ends_in_intron	6608028	6608028	-	asmbl_45502	none	blat.proc3829889.chain_2128	1	STRG.6056.1	1
scaffold_1	starts_in_intron	16735104	16735104	+	asmbl_2483	none	Trinity_GG_694_c0_g1_i3,blat.proc3829871.chain_1244	2	STRG.1174.1,Trinity_GG_694_c0_g1_i4,blat.proc3829871.chain_1241,blat.proc3829871.chain_1242,blat.proc3829871.chain_1243	5
scaffold_27	starts_in_intron	4763649	4763649	-	asmbl_36921	none	blat.proc3829901.chain_2016	1	STRG.28894.1,STRG.28894.2,blat.proc3829901.chain_2015	3
scaffold_9	ends_in_intron	9472815	9472815	-	asmbl_55152	none	blat.proc3829891.chain_3462	1	STRG.11298.1,STRG.11298.3,blat.proc3829891.chain_3465	3
scaffold_21	alt_donor	7290922	7290923	-	asmbl_27817	none	STRG.24237.1	1	STRG.24237.2,STRG.24237.3,blat.proc3829899.chain_1307,blat.proc3829899.chain_1309	4
scaffold_19	alt_acceptor	13264477	13264478	-	asmbl_21852,asmbl_21853	none	STRG.22635.1,Trinity_GG_29623_c0_g1_i4,blat.proc3829897.chain_3421	3	STRG.22635.2,blat.proc3829897.chain_3422	2
scaffold_20	ends_in_intron	10516296	10516296	-	asmbl_27034	none	Trinity_GG_30119_c0_g1_i4,blat.proc3829899.chain_521	2	STRG.23576.1,STRG.23576.2,blat.proc3829899.chain_520,blat.proc3829899.chain_522	4
scaffold_2	retained_intron	7408928	7409546	-	asmbl_23277,asmbl_23282	none	STRG.2065.1,Trinity_GG_18123_c0_g1_i2,blat.proc3829887.chain_1877,blat.proc3829887.chain_1879	4	STRG.2065.4,blat.proc3829887.chain_1875	2
scaffold_21	retained_intron	5528725	5528797	+	asmbl_28593	none	blat.proc3829883.chain_1219	1	STRG.24070.1,STRG.24070.2,blat.proc3829883.chain_1218	3
scaffold_1	alt_donor	1417292	1417293	+	asmbl_1479	none	STRG.86.2,Trinity_GG_65_c0_g1_i2,blat.proc3829871.chain_114	3	STRG.86.1,Trinity_GG_65_c0_g1_i1,blat.proc3829871.chain_115	3
scaffold_6	spliced_intron	11482302	11482747	+	asmbl_47269	none	STRG.7936.4	1	STRG.7936.2,blat.proc3829875.chain_300	2
scaffold_4	spliced_intron	16869332	16869415	-	asmbl_41976,asmbl_41979,asmbl_41980,asmbl_41981	none	STRG.5279.1,STRG.5279.2,STRG.5279.3,STRG.5279.4,blat.proc3829889.chain_1282	5	blat.proc3829889.chain_1280	1
scaffold_1	starts_in_intron	10856167	10856167	+	asmbl_2023	none	Trinity_GG_448_c0_g1_i4,blat.proc3829871.chain_774	2	STRG.709.1,STRG.709.3,blat.proc3829871.chain_772	3
scaffold_12	alt_donor	14171816	14171817	+	asmbl_9031,asmbl_9033,asmbl_9034	none	STRG.15236.1,blat.proc3829877.chain_3704,blat.proc3829877.chain_3707,blat.proc3829877.chain_3708	4	STRG.15236.2,blat.proc3829877.chain_3706	2
scaffold_17	spliced_intron	5711015	5711316	-	asmbl_18989,asmbl_18990,asmbl_18992	none	STRG.20262.1,blat.proc3829897.chain_1235,blat.proc3829897.chain_1236	3	STRG.20262.2,blat.proc3829897.chain_1234,blat.proc3829897.chain_1237	3
scaffold_8	skipped_exon	4872344	4873930	+	asmbl_51856,asmbl_51858	none	STRG.9943.1,STRG.9943.2,blat.proc3829875.chain_2422,blat.proc3829875.chain_2423	4	STRG.9943.3,STRG.9943.4,blat.proc3829875.chain_2420,blat.proc3829875.chain_2421	4
scaffold_1	spliced_intron	3498732	3498894	-	asmbl_146,asmbl_147,asmbl_149,asmbl_150,asmbl_151,asmbl_152,asmbl_153,asmbl_154,asmbl_155,asmbl_156,asmbl_157,asmbl_158	none	STRG.217.1,STRG.217.2,STRG.217.3,blat.proc3829887.chain_114,blat.proc3829887.chain_116,blat.proc3829887.chain_117,blat.proc3829887.chain_118,blat.proc3829887.chain_119,blat.proc3829887.chain_120,blat.proc3829887.chain_121,blat.proc3829887.chain_123,blat.proc3829887.chain_124,blat.proc3829887.chain_125	13	blat.proc3829887.chain_122	1
scaffold_21	alt_donor	7607691	7607692	+	asmbl_28772	none	STRG.24288.1,blat.proc3829883.chain_1436	2	STRG.24288.2,blat.proc3829883.chain_1437	2
scaffold_28	retained_intron	2199808	2199837	+	asmbl_38042,asmbl_38043	none	STRG.29369.1,STRG.29369.2,blat.proc3829885.chain_2468,blat.proc3829885.chain_2469,blat.proc3829885.chain_2470	5	STRG.29369.3	1
scaffold_20	starts_in_intron	816186	816186	+	asmbl_25535	none	blat.proc3829881.chain_3614	1	STRG.22780.1,STRG.22780.2,blat.proc3829881.chain_3615,blat.proc3829881.chain_3617	4
scaffold_2	retained_intron	15267438	15267758	+	asmbl_25023	none	Trinity_GG_1353_c2_g1_i1,blat.proc3829871.chain_2539	2	STRG.2480.3,blat.proc3829871.chain_2517,blat.proc3829871.chain_2522	3
scaffold_15	spliced_intron	13327877	13328035	+	asmbl_14571,asmbl_14577,asmbl_14578,asmbl_14579,asmbl_14582	none	STRG.18763.1,blat.proc3829879.chain_3296,blat.proc3829879.chain_3298,blat.proc3829879.chain_3303,blat.proc3829879.chain_3304	5	Trinity_GG_10264_c0_g1_i4,Trinity_GG_10264_c0_g1_i6,blat.proc3829879.chain_3297,blat.proc3829879.chain_3299	4
scaffold_1	spliced_intron	5748921	5749003	+	asmbl_1775,asmbl_1776,asmbl_1777	none	STRG.373.1,STRG.373.2,STRG.373.3,blat.proc3829871.chain_435,blat.proc3829871.chain_437	5	blat.proc3829871.chain_438	1
scaffold_15	starts_in_intron	5367299	5367299	-	asmbl_15212	none	STRG.18225.3	1	STRG.18225.1,STRG.18225.2	2
scaffold_26	ends_in_intron	1860581	1860581	-	asmbl_34692	none	blat.proc3829901.chain_1153	1	STRG.27918.1,STRG.27918.2	2
scaffold_17	retained_exon	9030392	9031033	-	asmbl_19189,asmbl_19190,asmbl_19191	none	STRG.20520.1,STRG.20520.5,STRG.20520.6	3	STRG.20520.3,STRG.20520.4	2
scaffold_5	spliced_intron	18808969	18809061	+	asmbl_44941	none	STRG.7000.1,blat.proc3829873.chain_3114	2	STRG.7000.2	1
scaffold_4	starts_in_intron	5047548	5047548	+	asmbl_42658	none	blat.proc3829873.chain_787	1	STRG.4397.1,Trinity_GG_2446_c0_g1_i2,blat.proc3829873.chain_788	3
scaffold_395	skipped_exon	1391	3387	-	asmbl_41032	none	STRG.30280.1,blat.proc3829901.chain_3348	2	STRG.30280.2	1
scaffold_22	ends_in_intron	900516	900516	+	asmbl_29191	none	STRG.24719.1,Trinity_GG_13671_c0_g1_i1,blat.proc3829883.chain_1778	3	Trinity_GG_13671_c0_g1_i2,Trinity_GG_13671_c0_g1_i3,blat.proc3829883.chain_1779,blat.proc3829883.chain_1780	4
scaffold_22	retained_intron	744120	744573	-	asmbl_29891	none	blat.proc3829899.chain_1764	1	blat.proc3829899.chain_1766	1
scaffold_4	retained_exon	16540328	16540450	-	asmbl_41940	none	STRG.5232.1,blat.proc3829889.chain_1286	2	STRG.5232.2,blat.proc3829889.chain_1285	2
scaffold_8	ends_in_intron	12951444	12951444	-	asmbl_53264	none	Trinity_GG_22825_c0_g1_i1,blat.proc3829891.chain_2606	2	STRG.10467.1,blat.proc3829891.chain_2607	2
scaffold_16	alt_acceptor	11337135	11337136	+	asmbl_17382,asmbl_17384,asmbl_17385	none	STRG.19652.1,STRG.19652.2,STRG.19652.5,blat.proc3829881.chain_553	4	STRG.19652.4,blat.proc3829881.chain_554,blat.proc3829881.chain_555	3
scaffold_7	spliced_intron	12452507	12452712	-	asmbl_50036,asmbl_50037,asmbl_50038,asmbl_50040,asmbl_50041,asmbl_50042,asmbl_50045	none	STRG.9342.1,STRG.9342.2,Trinity_GG_22282_c1_g1_i7,Trinity_GG_22282_c1_g1_i9,blat.proc3829891.chain_1604,blat.proc3829891.chain_1605,blat.proc3829891.chain_1606,blat.proc3829891.chain_1607,blat.proc3829891.chain_1608,blat.proc3829891.chain_1614	10	blat.proc3829891.chain_1611	1
scaffold_14	retained_intron	2263195	2263335	-	asmbl_12909	none	blat.proc3829895.chain_1520	1	STRG.16824.1,blat.proc3829895.chain_1521	2
scaffold_23	alt_donor	8950257	8950258	-	asmbl_31803	none	STRG.26135.1,blat.proc3829899.chain_3171	2	STRG.26135.2,blat.proc3829899.chain_3172	2
scaffold_13	alt_acceptor	734150	734151	+	asmbl_10476,asmbl_10477	none	STRG.15444.2,STRG.15444.3	2	STRG.15444.1,blat.proc3829879.chain_108	2
scaffold_23	retained_intron	10910316	10910432	-	asmbl_31883	none	STRG.26273.2	1	STRG.26273.1,STRG.26273.3	2
scaffold_10	retained_intron	13002218	13002487	+	asmbl_4843	none	STRG.12901.3,blat.proc3829877.chain_1477	2	STRG.12901.1,blat.proc3829877.chain_1478	2
scaffold_2	retained_exon	10137643	10137814	+	asmbl_24735,asmbl_24736	none	STRG.2203.2,STRG.2203.3,blat.proc3829871.chain_2325,blat.proc3829871.chain_2327	4	STRG.2203.1,blat.proc3829871.chain_2326	2
scaffold_8	skipped_exon	3489917	3490757	+	asmbl_51758	none	STRG.9839.1,blat.proc3829875.chain_2331	2	STRG.9839.2,STRG.9839.3,blat.proc3829875.chain_2330	3
scaffold_2	starts_in_intron	18707451	18707451	+	asmbl_25267	none	Trinity_GG_1541_c0_g1_i1,blat.proc3829871.chain_2909	2	STRG.2747.1,STRG.2747.2,Trinity_GG_1541_c0_g1_i2,Trinity_GG_1541_c0_g1_i3,blat.proc3829871.chain_2910,blat.proc3829871.chain_2911	6
scaffold_20	starts_in_intron	9652789	9652789	+	asmbl_26033	none	blat.proc3829883.chain_566	1	STRG.23494.1,blat.proc3829883.chain_567	2
scaffold_4	starts_in_intron	14965592	14965592	+	asmbl_43246	none	Trinity_GG_2864_c0_g1_i1,blat.proc3829873.chain_1443	2	STRG.5106.1,STRG.5106.2,blat.proc3829873.chain_1442,blat.proc3829873.chain_1444,blat.proc3829873.chain_1445,blat.proc3829873.chain_1446	6
scaffold_28	alternate_exon	1159136	1159239	-	asmbl_37299	none	STRG.29303.2,blat.proc3829901.chain_2411	2	STRG.29303.1	1
scaffold_5	alt_donor	11992175	11992176	-	asmbl_45815	none	STRG.6447.5	1	STRG.6447.3	1
scaffold_24	skipped_exon	6846851	6848069	-	asmbl_32980	none	STRG.26716.1,blat.proc3829901.chain_35	2	STRG.26716.2,blat.proc3829901.chain_36	2
scaffold_26	alt_acceptor	9843313	9843314	+	asmbl_35801,asmbl_35806,asmbl_35807,asmbl_35810,asmbl_35812,asmbl_35814	none	STRG.28526.5,blat.proc3829885.chain_1556,blat.proc3829885.chain_1558,blat.proc3829885.chain_1561,blat.proc3829885.chain_1562,blat.proc3829885.chain_1564,blat.proc3829885.chain_1567	7	STRG.28526.1,STRG.28526.3,blat.proc3829885.chain_1557,blat.proc3829885.chain_1559,blat.proc3829885.chain_1560	5
scaffold_3	alt_donor	14217873	14217874	-	asmbl_39289	none	STRG.3755.2	1	STRG.3755.1	1
scaffold_22	alt_acceptor	708587	708588	-	asmbl_29884	none	blat.proc3829899.chain_1783	1	STRG.24709.1,STRG.24709.2,blat.proc3829899.chain_1781,blat.proc3829899.chain_1782	4
scaffold_1	alt_acceptor	5990011	5990012	+	asmbl_1803	none	STRG.398.2	1	STRG.398.1,blat.proc3829871.chain_462	2
scaffold_3	starts_in_intron	17455909	17455909	+	asmbl_40641,asmbl_40642,asmbl_40644,asmbl_40645	none	STRG.3976.3,STRG.3976.4,Trinity_GG_2205_c0_g1_i3,Trinity_GG_2205_c0_g1_i4,blat.proc3829873.chain_331,blat.proc3829873.chain_332,blat.proc3829873.chain_334	7	STRG.3976.1,STRG.3976.2,Trinity_GG_2205_c0_g1_i1,blat.proc3829873.chain_333	4
scaffold_21	retained_intron	6818680	6818878	+	asmbl_28719,asmbl_28720,asmbl_28721,asmbl_28722	none	blat.proc3829883.chain_1301,blat.proc3829883.chain_1302,blat.proc3829883.chain_1303,blat.proc3829883.chain_1304	4	STRG.24196.1,blat.proc3829883.chain_1300	2
scaffold_15	alt_acceptor	8619332	8619333	+	asmbl_14288	none	STRG.18401.2	1	STRG.18401.1,blat.proc3829879.chain_3012,blat.proc3829879.chain_3013	3
scaffold_12	retained_intron	4753264	4753369	+	asmbl_8578	none	Trinity_GG_8048_c0_g1_i5,blat.proc3829877.chain_3063	2	STRG.14640.2	1
scaffold_14	alt_acceptor	3226991	3226992	+	asmbl_11901	none	STRG.16895.2	1	STRG.16895.1,STRG.16895.3,blat.proc3829879.chain_1544	3
scaffold_22	starts_in_intron	6129917	6129917	+	asmbl_29394	none	Trinity_GG_13800_c2_g1_i4,blat.proc3829883.chain_2006	2	STRG.24955.3,STRG.24955.4,STRG.24955.6,STRG.24955.7,blat.proc3829883.chain_2005,blat.proc3829883.chain_2007,blat.proc3829883.chain_2008,blat.proc3829883.chain_2009,blat.proc3829883.chain_2010	9
scaffold_19	alt_donor	12007695	12007696	-	asmbl_21655	none	STRG.22509.1	1	Trinity_GG_29534_c0_g1_i2,Trinity_GG_29534_c0_g1_i4,blat.proc3829897.chain_3201,blat.proc3829897.chain_3202	4
scaffold_6	retained_intron	1550441	1550570	+	asmbl_46671	none	STRG.7196.1,Trinity_GG_3964_c0_g1_i2,blat.proc3829873.chain_3344	3	STRG.7196.2,Trinity_GG_3964_c0_g1_i1,blat.proc3829873.chain_3343	3
scaffold_25	retained_intron	9450215	9450348	+	asmbl_33809	none	blat.proc3829885.chain_732	1	STRG.27744.1,STRG.27744.2,blat.proc3829885.chain_731,blat.proc3829885.chain_734	4
scaffold_4	skipped_exon	16872570	16873884	-	asmbl_41979	none	STRG.5279.2	1	STRG.5279.1,blat.proc3829889.chain_1280,blat.proc3829889.chain_1282	3
scaffold_4	ends_in_intron	14568502	14568502	+	asmbl_43224	none	blat.proc3829873.chain_1398	1	STRG.5074.1,STRG.5074.2,blat.proc3829873.chain_1399,blat.proc3829873.chain_1400,blat.proc3829873.chain_1401	5
scaffold_1	alternate_exon	12338334	12339979	-	asmbl_710,asmbl_713,asmbl_717,asmbl_720,asmbl_722	none	STRG.843.2,blat.proc3829887.chain_736,blat.proc3829887.chain_739,blat.proc3829887.chain_741,blat.proc3829887.chain_742,blat.proc3829887.chain_745	6	blat.proc3829887.chain_740,blat.proc3829887.chain_744	2
scaffold_8	alternate_exon	17303307	17314445	-	asmbl_53452,asmbl_53453	none	STRG.10645.1,STRG.10645.2,STRG.10645.5,blat.proc3829891.chain_2805,blat.proc3829891.chain_2806	5	STRG.10645.3,STRG.10645.4,blat.proc3829891.chain_2807	3
scaffold_3	retained_exon	10628698	10629296	+	asmbl_40238,asmbl_40241	none	STRG.3509.2,STRG.3509.3,blat.proc3829871.chain_3605	3	STRG.3509.1,blat.proc3829871.chain_3608	2
scaffold_13	retained_intron	5506444	5506736	+	asmbl_10841	none	STRG.15830.1,Trinity_GG_8666_c0_g1_i4,blat.proc3829879.chain_461	3	STRG.15830.2,STRG.15830.3,STRG.15830.4,Trinity_GG_8666_c0_g1_i1,Trinity_GG_8666_c0_g1_i2,Trinity_GG_8666_c0_g1_i3,blat.proc3829879.chain_460,blat.proc3829879.chain_462,blat.proc3829879.chain_463	9
scaffold_3	spliced_intron	6658263	6658355	+	asmbl_40063,asmbl_40066,asmbl_40067,asmbl_40068,asmbl_40070	none	STRG.3290.2,STRG.3290.5,blat.proc3829871.chain_3460,blat.proc3829871.chain_3468,blat.proc3829871.chain_3469	5	STRG.3290.1,STRG.3290.3,STRG.3290.4,blat.proc3829871.chain_3459,blat.proc3829871.chain_3461,blat.proc3829871.chain_3464,blat.proc3829871.chain_3466	7
scaffold_1	alt_donor	13813195	13813196	-	asmbl_851	none	STRG.988.1,blat.proc3829887.chain_903	2	STRG.988.2,blat.proc3829887.chain_902	2
scaffold_22	retained_intron	7416523	7416632	-	asmbl_30159,asmbl_30161	none	STRG.25062.1,blat.proc3829899.chain_2148,blat.proc3829899.chain_2151	3	STRG.25062.2	1
scaffold_22	alt_acceptor	9124112	9124113	-	asmbl_30278	none	STRG.25227.2	1	STRG.25227.1	1
scaffold_25	spliced_intron	5157955	5158063	-	asmbl_34231	none	blat.proc3829901.chain_747	1	blat.proc3829901.chain_748	1
scaffold_10	starts_in_intron	8794702	8794702	-	asmbl_3527	none	blat.proc3829893.chain_1067	1	STRG.12624.1	1
scaffold_13	retained_intron	6949079	6950695	-	asmbl_9775,asmbl_9776	none	STRG.15968.1,STRG.15968.6,Trinity_GG_25972_c0_g1_i5	3	STRG.15968.2,STRG.15968.4	2
scaffold_2	spliced_intron	7323594	7324003	+	asmbl_24599	none	STRG.2062.2	1	STRG.2062.1,Trinity_GG_1176_c0_g1_i3,Trinity_GG_1176_c0_g1_i4,blat.proc3829871.chain_2159,blat.proc3829871.chain_2161	5
scaffold_14	alt_acceptor	7259000	7259001	-	asmbl_13166	none	STRG.17147.1	1	STRG.17147.2	1
scaffold_25	alt_donor	3705287	3705288	-	asmbl_34129	none	STRG.27301.1,blat.proc3829901.chain_604	2	STRG.27301.2,blat.proc3829901.chain_603	2
scaffold_1	ends_in_intron	12546779	12546779	-	asmbl_739	none	blat.proc3829887.chain_661	1	STRG.867.1,STRG.867.2,blat.proc3829887.chain_663	3
scaffold_355	alt_donor	6453	6454	+	asmbl_40990	none	STRG.30274.1	1	STRG.30274.2	1
scaffold_21	alt_donor	7963979	7963980	-	asmbl_27895	none	STRG.24318.3	1	STRG.24318.2,blat.proc3829899.chain_1410	2
scaffold_23	retained_intron	2032895	2033003	-	asmbl_31406	none	Trinity_GG_31354_c0_g1_i5,blat.proc3829899.chain_2756	2	STRG.25657.1	1
scaffold_4	spliced_intron	4416472	4417089	+	asmbl_42571,asmbl_42577,asmbl_42580,asmbl_42585,asmbl_42591	none	STRG.4344.1,STRG.4344.2,STRG.4344.3,Trinity_GG_2404_c0_g1_i8,blat.proc3829873.chain_682,blat.proc3829873.chain_683,blat.proc3829873.chain_688,blat.proc3829873.chain_691,blat.proc3829873.chain_695	9	Trinity_GG_2404_c0_g1_i10,Trinity_GG_2404_c0_g1_i19,blat.proc3829873.chain_681,blat.proc3829873.chain_685,blat.proc3829873.chain_686,blat.proc3829873.chain_687,blat.proc3829873.chain_689,blat.proc3829873.chain_690,blat.proc3829873.chain_698	9
scaffold_20	retained_intron	7469286	7469829	-	asmbl_26828,asmbl_26830,asmbl_26831	none	blat.proc3829899.chain_391,blat.proc3829899.chain_396,blat.proc3829899.chain_401	3	STRG.23308.1,blat.proc3829899.chain_389,blat.proc3829899.chain_394,blat.proc3829899.chain_399	4
scaffold_12	skipped_exon	14104032	14104838	-	asmbl_8107,asmbl_8108	none	STRG.15225.1,Trinity_GG_25546_c0_g1_i1,Trinity_GG_25546_c0_g1_i5,blat.proc3829893.chain_3674,blat.proc3829893.chain_3675,blat.proc3829893.chain_3682	6	Trinity_GG_25546_c0_g1_i2,Trinity_GG_25546_c0_g1_i8,blat.proc3829893.chain_3677,blat.proc3829893.chain_3678,blat.proc3829893.chain_3679,blat.proc3829893.chain_3680	6
scaffold_6	alt_donor	19076966	19076967	+	asmbl_47814,asmbl_47816	none	STRG.8572.2,STRG.8572.3,Trinity_GG_4663_c0_g1_i3,blat.proc3829875.chain_866	4	STRG.8572.1,STRG.8572.4,Trinity_GG_4663_c0_g1_i2,Trinity_GG_4663_c0_g1_i5,blat.proc3829875.chain_865,blat.proc3829875.chain_867	6
scaffold_9	alternate_exon	5279152	5282500	+	asmbl_53993	none	STRG.11095.3,Trinity_GG_6177_c0_g1_i1,Trinity_GG_6188_c3_g1_i1,blat.proc3829875.chain_3558,blat.proc3829875.chain_3592	5	blat.proc3829875.chain_3590	1
scaffold_8	alternate_exon	9868030	9868366	+	asmbl_52102	none	STRG.10225.6	1	blat.proc3829875.chain_2698	1
scaffold_17	spliced_intron	1729059	1729151	+	asmbl_17753,asmbl_17755	none	STRG.19996.1,STRG.19996.2,blat.proc3829881.chain_836	3	blat.proc3829881.chain_835	1
scaffold_23	retained_exon	1851477	1851584	+	asmbl_30666	none	STRG.25646.1	1	STRG.25646.2,blat.proc3829883.chain_2557	2
scaffold_4	alt_acceptor	10873308	10873309	-	asmbl_41605	none	blat.proc3829889.chain_807	1	STRG.4807.1,blat.proc3829889.chain_806,blat.proc3829889.chain_808,blat.proc3829889.chain_809	4
scaffold_18	alt_acceptor	7875915	7875916	+	asmbl_20836,asmbl_20837,asmbl_20839	none	STRG.21481.2,STRG.21481.3,blat.proc3829881.chain_2401,blat.proc3829881.chain_2402	4	STRG.21481.1,STRG.21481.4,blat.proc3829881.chain_2403,blat.proc3829881.chain_2404	4
scaffold_15	alternate_exon	11142117	11142185	-	asmbl_15500,asmbl_15505	none	blat.proc3829895.chain_3284,blat.proc3829895.chain_3285	2	blat.proc3829895.chain_3283	1
scaffold_23	alt_acceptor	4226049	4226050	-	asmbl_31575	none	blat.proc3829899.chain_2946	1	STRG.25818.1,STRG.25818.2,STRG.25818.3,STRG.25818.5,blat.proc3829899.chain_2943,blat.proc3829899.chain_2944,blat.proc3829899.chain_2945,blat.proc3829899.chain_2949	8
scaffold_6	alternate_exon	13918579	13918810	-	asmbl_48897	none	STRG.8132.4	1	STRG.8132.1,STRG.8132.2,STRG.8132.3,blat.proc3829891.chain_438,blat.proc3829891.chain_439,blat.proc3829891.chain_440	6
scaffold_13	ends_in_intron	16140934	16140934	+	asmbl_11535	none	blat.proc3829879.chain_1369	1	STRG.16641.1,STRG.16641.2,Trinity_GG_9161_c0_g1_i1,blat.proc3829879.chain_1368	4
scaffold_17	starts_in_intron	8808960	8808960	-	asmbl_19166	none	blat.proc3829897.chain_1442	1	STRG.20479.1,STRG.20479.2,blat.proc3829897.chain_1441,blat.proc3829897.chain_1443	4
scaffold_23	spliced_intron	9518168	9518194	-	asmbl_31819	none	blat.proc3829899.chain_3258	1	Trinity_GG_31639_c0_g1_i1	1
scaffold_4	alternate_exon	5578600	5578913	-	asmbl_41347	none	STRG.4454.1,blat.proc3829889.chain_567	2	STRG.4454.2,blat.proc3829889.chain_568	2
scaffold_24	alt_acceptor	9119235	9119236	+	asmbl_32511	none	Trinity_GG_14906_c0_g1_i10,blat.proc3829885.chain_103,blat.proc3829885.chain_99	3	blat.proc3829885.chain_101,blat.proc3829885.chain_97	2
scaffold_5	retained_intron	189801	189832	+	asmbl_43748	none	STRG.5581.2,Trinity_GG_3085_c4_g1_i2,Trinity_GG_3085_c4_g1_i6,blat.proc3829873.chain_1832	4	STRG.5581.1,STRG.5581.3,STRG.5581.4	3
scaffold_4	spliced_intron	4692582	4692952	+	asmbl_42627,asmbl_42630,asmbl_42633	none	STRG.4376.1,blat.proc3829873.chain_714,blat.proc3829873.chain_716,blat.proc3829873.chain_717	4	Trinity_GG_2414_c0_g1_i9,blat.proc3829873.chain_715	2
scaffold_3	spliced_intron	6661802	6662072	+	asmbl_40074,asmbl_40076	none	STRG.3291.1,STRG.3291.2,blat.proc3829871.chain_3474	3	STRG.3291.3,Trinity_GG_1863_c0_g1_i4,blat.proc3829871.chain_3475	3
scaffold_12	alt_donor	14195841	14195842	-	asmbl_8128	none	STRG.15238.1,blat.proc3829893.chain_3696	2	STRG.15238.2	1
scaffold_2	retained_intron	5196150	5196244	-	asmbl_23168	none	STRG.1937.1,blat.proc3829887.chain_1835	2	STRG.1937.2,blat.proc3829887.chain_1834	2
scaffold_8	alt_acceptor	3102135	3102136	-	asmbl_52721,asmbl_52722	none	STRG.9818.1,blat.proc3829891.chain_2001,blat.proc3829891.chain_2003	3	STRG.9818.2	1
scaffold_7	skipped_exon	4928728	4929215	+	asmbl_50652,asmbl_50654,asmbl_50656,asmbl_50660,asmbl_50661,asmbl_50663	none	STRG.8834.1,STRG.8834.2,blat.proc3829875.chain_1275,blat.proc3829875.chain_1276,blat.proc3829875.chain_1278,blat.proc3829875.chain_1279,blat.proc3829875.chain_1281	7	blat.proc3829875.chain_1282,blat.proc3829875.chain_1283	2
scaffold_1	alt_acceptor	1043519	1043520	+	asmbl_1449	none	STRG.62.2,blat.proc3829871.chain_11	2	STRG.62.4	1
scaffold_12	spliced_intron	2662471	2662567	+	asmbl_8467	none	STRG.14495.3,blat.proc3829877.chain_2969	2	STRG.14495.1,blat.proc3829877.chain_2970	2
scaffold_10	alternate_exon	12999706	13002019	-	asmbl_3749	none	STRG.12900.2	1	STRG.12900.1,blat.proc3829893.chain_1396	2
scaffold_7	starts_in_intron	8077899	8077899	-	asmbl_49797	none	blat.proc3829891.chain_1308	1	STRG.9036.1,STRG.9036.2,blat.proc3829891.chain_1309	3
scaffold_1	ends_in_intron	18486656	18486656	-	asmbl_1107,asmbl_1108	none	STRG.1300.4,STRG.1300.5,blat.proc3829887.chain_1208,blat.proc3829887.chain_1209	4	STRG.1300.2,STRG.1300.3,blat.proc3829887.chain_1210,blat.proc3829887.chain_1211,blat.proc3829887.chain_1212	5
scaffold_12	retained_intron	3331444	3331469	+	asmbl_8507,asmbl_8508	none	STRG.14546.1,STRG.14546.2,blat.proc3829877.chain_3047,blat.proc3829877.chain_3049	4	STRG.14546.3	1
scaffold_27	alt_donor	4457542	4457543	-	asmbl_36907	none	STRG.28878.1,blat.proc3829901.chain_2020	2	STRG.28878.2,blat.proc3829901.chain_2019	2
scaffold_25	retained_intron	5157955	5158063	-	asmbl_34229	none	blat.proc3829901.chain_748	1	blat.proc3829901.chain_747	1
scaffold_7	starts_in_intron	10686218	10686218	+	asmbl_51017	none	STRG.9230.2,Trinity_GG_5121_c1_g1_i1,blat.proc3829875.chain_1677	3	STRG.9230.1,blat.proc3829875.chain_1674,blat.proc3829875.chain_1675	3
scaffold_25	alt_acceptor	4888638	4888639	+	asmbl_33544	none	STRG.27402.2,Trinity_GG_15074_c0_g1_i1,blat.proc3829885.chain_369	3	STRG.27402.1,Trinity_GG_15074_c0_g1_i2,blat.proc3829885.chain_370	3
scaffold_26	retained_exon	9834406	9834498	-	asmbl_35063,asmbl_35064	none	STRG.28503.1,STRG.28503.2,blat.proc3829901.chain_1556,blat.proc3829901.chain_1557	4	STRG.28503.3	1
scaffold_5	alternate_exon	6912109	6912505	+	asmbl_44119	none	STRG.6096.1,Trinity_GG_3318_c0_g1_i4,blat.proc3829873.chain_2233	3	STRG.6096.2,blat.proc3829873.chain_2232	2
scaffold_12	alt_acceptor	15677549	15677550	-	asmbl_8231,asmbl_8232,asmbl_8233,asmbl_8234,asmbl_8236	none	STRG.15344.1,STRG.15344.2,STRG.15344.4,STRG.15344.5,blat.proc3829895.chain_19,blat.proc3829895.chain_20,blat.proc3829895.chain_21,blat.proc3829895.chain_22	8	STRG.15344.3	1
scaffold_23	starts_in_intron	6990550	6990550	-	asmbl_31716,asmbl_31718	none	STRG.26001.1,STRG.26001.3,blat.proc3829899.chain_3073	3	STRG.26001.2,blat.proc3829899.chain_3072	2
scaffold_13	starts_in_intron	4613	4613	+	asmbl_10418	none	Trinity_GG_8474_c0_g1_i8,blat.proc3829879.chain_72	2	STRG.15408.1,STRG.15408.2,STRG.15408.3,Trinity_GG_8474_c0_g1_i1,Trinity_GG_8474_c0_g1_i2,Trinity_GG_8474_c0_g1_i4,Trinity_GG_8474_c0_g1_i5,Trinity_GG_8474_c0_g1_i6,Trinity_GG_8474_c0_g1_i7,blat.proc3829879.chain_71,blat.proc3829879.chain_74,blat.proc3829879.chain_75,blat.proc3829879.chain_76,blat.proc3829879.chain_77,blat.proc3829879.chain_78	15
scaffold_13	retained_exon	6291541	6291693	+	asmbl_10901,asmbl_10906	none	STRG.15910.1,blat.proc3829879.chain_559,blat.proc3829879.chain_562	3	STRG.15910.2,blat.proc3829879.chain_560,blat.proc3829879.chain_561	3
scaffold_13	alternate_exon	12870874	12871085	-	asmbl_10110	none	STRG.16367.1	1	STRG.16367.2	1
scaffold_4	ends_in_intron	4100441	4100441	+	asmbl_42557	none	blat.proc3829873.chain_664	1	STRG.4315.1	1
scaffold_13	retained_intron	1532474	1532709	+	asmbl_10536	none	Trinity_GG_8539_c0_g1_i1,blat.proc3829879.chain_233	2	STRG.15501.1,Trinity_GG_8539_c0_g1_i2,blat.proc3829879.chain_232	3
scaffold_7	spliced_intron	12614841	12615086	+	asmbl_51158,asmbl_51159	none	STRG.9361.1,Trinity_GG_5165_c0_g1_i1,Trinity_GG_5165_c0_g1_i2,blat.proc3829875.chain_1764,blat.proc3829875.chain_1766	5	STRG.9361.2,Trinity_GG_5165_c0_g1_i3,blat.proc3829875.chain_1765	3
scaffold_4	retained_intron	3383834	3384084	+	asmbl_42521	none	blat.proc3829873.chain_588	1	STRG.4269.2,STRG.4269.3,blat.proc3829873.chain_584,blat.proc3829873.chain_585,blat.proc3829873.chain_587	5
scaffold_6	ends_in_intron	4531957	4531957	-	asmbl_48278	none	blat.proc3829889.chain_3451	1	STRG.7426.2,blat.proc3829889.chain_3450	2
scaffold_3	ends_in_intron	17341466	17341466	+	asmbl_40629	none	blat.proc3829873.chain_362	1	STRG.3962.1,blat.proc3829873.chain_361	2
scaffold_6	retained_intron	4519219	4519479	-	asmbl_48274	none	Trinity_GG_21196_c0_g1_i1,blat.proc3829889.chain_3452	2	STRG.7425.1,blat.proc3829889.chain_3453	2
scaffold_6	alt_donor	7171490	7171491	+	asmbl_46990	none	STRG.7621.3	1	STRG.7621.1,STRG.7621.4,blat.proc3829873.chain_3739	3
scaffold_24	starts_in_intron	3759519	3759519	-	asmbl_32833	none	STRG.26554.2	1	STRG.26554.1,blat.proc3829899.chain_3606,blat.proc3829899.chain_3608	3
scaffold_1	alt_acceptor	9897735	9897736	-	asmbl_571,asmbl_572	none	STRG.661.1,blat.proc3829887.chain_559	2	STRG.661.2,blat.proc3829887.chain_557	2
scaffold_11	alt_donor	11937031	11937032	-	asmbl_7019,asmbl_7022	none	STRG.14160.4,STRG.14160.5	2	STRG.14160.2,STRG.14160.3	2
scaffold_26	spliced_intron	3563207	3563305	+	asmbl_35321,asmbl_35322,asmbl_35323,asmbl_35324,asmbl_35326	none	STRG.28018.1,STRG.28018.2,STRG.28018.4,STRG.28018.5,blat.proc3829885.chain_1001,blat.proc3829885.chain_1002,blat.proc3829885.chain_1003,blat.proc3829885.chain_1005	8	Trinity_GG_15467_c0_g1_i5,blat.proc3829885.chain_1004	2
scaffold_4	spliced_intron	15379460	15379630	-	asmbl_41843	none	STRG.5131.1,blat.proc3829889.chain_1142	2	STRG.5131.2,Trinity_GG_19846_c0_g1_i1,blat.proc3829889.chain_1143	3
scaffold_26	ends_in_intron	10119321	10119321	-	asmbl_35088,asmbl_35089	none	Trinity_GG_32936_c0_g1_i10,Trinity_GG_32936_c0_g1_i11,blat.proc3829901.chain_1630,blat.proc3829901.chain_1634	4	STRG.28511.1,STRG.28511.2,Trinity_GG_32936_c0_g1_i13,Trinity_GG_32936_c0_g1_i3,Trinity_GG_32936_c0_g1_i5,Trinity_GG_32936_c0_g1_i8,blat.proc3829901.chain_1632,blat.proc3829901.chain_1633,blat.proc3829901.chain_1635,blat.proc3829901.chain_1636	10
scaffold_22	skipped_exon	4433987	4435158	-	asmbl_30030	none	STRG.24854.1,Trinity_GG_30894_c0_g1_i1,blat.proc3829899.chain_1967	3	Trinity_GG_30894_c0_g1_i2,blat.proc3829899.chain_1966	2
scaffold_6	starts_in_intron	4973907	4973907	-	asmbl_48319	none	STRG.7465.1,blat.proc3829889.chain_3475	2	STRG.7465.2,blat.proc3829889.chain_3476	2
scaffold_9	alt_acceptor	3913095	3913096	-	asmbl_54914	none	STRG.10999.2	1	STRG.10999.1,Trinity_GG_23099_c0_g1_i1,blat.proc3829891.chain_3141	3
scaffold_4	alt_donor	4103311	4103312	+	asmbl_42558	none	STRG.4315.1	1	blat.proc3829873.chain_662	1
scaffold_9	ends_in_intron	11427325	11427325	-	asmbl_55249	none	Trinity_GG_23341_c1_g1_i1,blat.proc3829891.chain_3581	2	STRG.11448.1,blat.proc3829891.chain_3580	2
scaffold_1	ends_in_intron	20741983	20741983	-	asmbl_1201	none	Trinity_GG_17790_c2_g1_i1,blat.proc3829887.chain_1309	2	STRG.1419.1,blat.proc3829887.chain_1304,blat.proc3829887.chain_1305,blat.proc3829887.chain_1306	4
scaffold_10	spliced_intron	5006780	5006917	-	asmbl_3246,asmbl_3247,asmbl_3248	none	STRG.12316.1,STRG.12316.2,Trinity_GG_23874_c0_g1_i4,blat.proc3829893.chain_753,blat.proc3829893.chain_754,blat.proc3829893.chain_756	6	Trinity_GG_23874_c0_g1_i2,blat.proc3829893.chain_755	2
scaffold_9	alt_donor	17470141	17470142	-	asmbl_55612	none	STRG.11832.2	1	STRG.11832.3,blat.proc3829893.chain_238	2
scaffold_9	skipped_exon	15589007	15589902	+	asmbl_54554,asmbl_54556	none	STRG.11739.1,blat.proc3829877.chain_496,blat.proc3829877.chain_497	3	blat.proc3829877.chain_498,blat.proc3829877.chain_499	2
scaffold_2	alt_donor	10646914	10646915	-	asmbl_23445	none	STRG.2223.2	1	STRG.2223.1	1
scaffold_16	alt_acceptor	6095204	6095205	-	asmbl_16311,asmbl_16315	none	STRG.19329.2,blat.proc3829897.chain_380	2	STRG.19329.1,blat.proc3829897.chain_379,blat.proc3829897.chain_382,blat.proc3829897.chain_383,blat.proc3829897.chain_384	5
scaffold_24	starts_in_intron	828361	828361	+	asmbl_32059	none	Trinity_GG_14525_c1_g1_i1	1	STRG.26344.1	1
scaffold_2	retained_intron	4687220	4687254	-	asmbl_23113,asmbl_23115	none	STRG.1889.1,Trinity_GG_18057_c0_g1_i1,blat.proc3829887.chain_1721	3	STRG.1889.2,STRG.1889.3	2
scaffold_3	alternate_exon	947964	948052	-	asmbl_38645	none	STRG.2916.1	1	blat.proc3829887.chain_2706	1
scaffold_15	alternate_exon	15353387	15353491	+	asmbl_14705,asmbl_14706,asmbl_14710,asmbl_14711	none	STRG.18909.1,STRG.18909.2,blat.proc3829879.chain_3500,blat.proc3829879.chain_3502,blat.proc3829879.chain_3504	5	STRG.18909.3,Trinity_GG_10368_c0_g1_i4,Trinity_GG_10368_c0_g1_i7,Trinity_GG_10368_c0_g1_i9,blat.proc3829879.chain_3501,blat.proc3829879.chain_3503,blat.proc3829879.chain_3505	7
scaffold_3	starts_in_intron	11450933	11450933	-	asmbl_39120	none	Trinity_GG_18960_c0_g1_i4,blat.proc3829887.chain_3342	2	STRG.3579.1,STRG.3579.2,blat.proc3829887.chain_3343,blat.proc3829887.chain_3344	4
scaffold_2	alternate_exon	14018816	14018962	+	asmbl_24901,asmbl_24902,asmbl_24903	none	STRG.2396.1,STRG.2396.2,Trinity_GG_1338_c0_g1_i2,Trinity_GG_1338_c0_g1_i4,blat.proc3829871.chain_2492,blat.proc3829871.chain_2493	6	STRG.2396.3,blat.proc3829871.chain_2494	2
scaffold_26	skipped_exon	4142306	4142563	+	asmbl_35400	none	STRG.28106.2	1	STRG.28106.1,STRG.28106.3	2
scaffold_8	retained_exon	14569707	14569797	+	asmbl_52369	none	STRG.10535.1,blat.proc3829875.chain_3054	2	STRG.10535.2	1
scaffold_6	alternate_exon	8546709	8547325	+	asmbl_47080	none	STRG.7724.1,Trinity_GG_4234_c0_g1_i1,blat.proc3829875.chain_82	3	STRG.7724.2,Trinity_GG_4234_c0_g1_i2,blat.proc3829875.chain_81	3
scaffold_5	spliced_intron	5045141	5045218	+	asmbl_43995	none	blat.proc3829873.chain_2113	1	Trinity_GG_3261_c0_g2_i1,blat.proc3829873.chain_2111	2
scaffold_11	alt_donor	12410296	12410297	-	asmbl_7069	none	STRG.14149.2	1	STRG.14149.3,blat.proc3829893.chain_2537	2
scaffold_20	spliced_intron	8578419	8578764	-	asmbl_26920	none	STRG.23398.1,blat.proc3829899.chain_319	2	blat.proc3829899.chain_318	1
scaffold_14	alt_donor	10019031	10019032	-	asmbl_13388	none	STRG.17358.4,blat.proc3829895.chain_2067	2	STRG.17358.3,blat.proc3829895.chain_2065	2
scaffold_12	alt_donor	13391493	13391494	-	asmbl_8071,asmbl_8072,asmbl_8073,asmbl_8074,asmbl_8078,asmbl_8079	none	STRG.15208.1,STRG.15208.2,STRG.15208.3,blat.proc3829893.chain_3545,blat.proc3829893.chain_3546,blat.proc3829893.chain_3547,blat.proc3829893.chain_3548	7	blat.proc3829893.chain_3544	1
scaffold_4	ends_in_intron	4067318	4067318	+	asmbl_42541	none	blat.proc3829873.chain_595	1	STRG.4306.1,blat.proc3829873.chain_596	2
scaffold_24	starts_in_intron	3881673	3881673	-	asmbl_32846	none	Trinity_GG_31857_c0_g1_i1,blat.proc3829899.chain_3618	2	STRG.26551.1	1
scaffold_27	alternate_exon	1028333	1028646	-	asmbl_36690	none	STRG.28589.1,blat.proc3829901.chain_1729	2	STRG.28589.2,STRG.28589.3,Trinity_GG_32976_c2_g1_i1,blat.proc3829901.chain_1731	4
scaffold_11	spliced_intron	9829790	9830568	+	asmbl_5871	none	STRG.13996.4,blat.proc3829877.chain_2506	2	STRG.13996.1,STRG.13996.3,Trinity_GG_7729_c0_g1_i9,blat.proc3829877.chain_2511,blat.proc3829877.chain_2513,blat.proc3829877.chain_2514	6
scaffold_14	alt_acceptor	2375443	2375444	-	asmbl_12924	none	blat.proc3829895.chain_1579	1	STRG.16839.5,blat.proc3829895.chain_1581	2
scaffold_11	retained_intron	11783168	11784314	+	asmbl_5964	none	STRG.14087.4	1	STRG.14087.1,STRG.14087.2,STRG.14087.5	3
scaffold_2	skipped_exon	14734113	14735586	+	asmbl_25000,asmbl_25005	none	STRG.2472.1,blat.proc3829871.chain_2652,blat.proc3829871.chain_2653	3	STRG.2472.2,blat.proc3829871.chain_2654	2
scaffold_22	retained_exon	6105170	6105220	-	asmbl_30073	none	STRG.24950.1,blat.proc3829899.chain_2006	2	STRG.24950.2	1
scaffold_12	ends_in_intron	8356388	8356388	-	asmbl_7744	none	blat.proc3829893.chain_3162	1	blat.proc3829893.chain_3163	1
scaffold_13	retained_intron	360693	360785	-	asmbl_9277,asmbl_9282	none	STRG.15426.2,Trinity_GG_25666_c0_g1_i3,Trinity_GG_25666_c0_g2_i1,blat.proc3829895.chain_165,blat.proc3829895.chain_166	5	STRG.15426.1,STRG.15426.3,STRG.15426.4,STRG.15426.5,Trinity_GG_25666_c0_g1_i10,Trinity_GG_25666_c0_g1_i11,Trinity_GG_25666_c0_g1_i14,Trinity_GG_25666_c0_g1_i6,Trinity_GG_25666_c0_g1_i8,blat.proc3829895.chain_155,blat.proc3829895.chain_156,blat.proc3829895.chain_159,blat.proc3829895.chain_161,blat.proc3829895.chain_163	14
scaffold_13	spliced_intron	5506444	5506736	+	asmbl_10838,asmbl_10839,asmbl_10840	none	STRG.15830.2,STRG.15830.3,STRG.15830.4,Trinity_GG_8666_c0_g1_i1,Trinity_GG_8666_c0_g1_i2,Trinity_GG_8666_c0_g1_i3,blat.proc3829879.chain_460,blat.proc3829879.chain_462,blat.proc3829879.chain_463	9	STRG.15830.1,Trinity_GG_8666_c0_g1_i4,blat.proc3829879.chain_461	3
scaffold_10	alt_donor	15481438	15481439	-	asmbl_3888	none	STRG.13055.2	1	STRG.13055.1,blat.proc3829893.chain_1559	2
scaffold_8	alt_donor	18071080	18071081	+	asmbl_52515	none	STRG.10696.1,blat.proc3829875.chain_3187	2	STRG.10696.2	1
scaffold_10	alt_acceptor	11598326	11598327	+	asmbl_4750	none	STRG.12807.1	1	STRG.12807.2	1
scaffold_20	alt_acceptor	5544121	5544122	+	asmbl_25777	none	STRG.23164.2	1	STRG.23164.1	1
scaffold_9	ends_in_intron	5698629	5698629	-	asmbl_54983	none	Trinity_GG_23200_c1_g1_i1,blat.proc3829891.chain_3308	2	STRG.11131.1	1
scaffold_28	retained_intron	2808976	2809341	-	asmbl_37409,asmbl_37411,asmbl_37412,asmbl_37414	none	blat.proc3829901.chain_2492,blat.proc3829901.chain_2494,blat.proc3829901.chain_2495,blat.proc3829901.chain_2497	4	STRG.29459.1,blat.proc3829901.chain_2491,blat.proc3829901.chain_2493,blat.proc3829901.chain_2496	4
scaffold_8	ends_in_intron	10488457	10488457	-	asmbl_53104	none	blat.proc3829891.chain_2410	1	STRG.10281.1,blat.proc3829891.chain_2411,blat.proc3829891.chain_2412	3
scaffold_13	retained_exon	13692944	13692988	-	asmbl_10120	none	STRG.16405.1	1	STRG.16405.2,blat.proc3829895.chain_1135	2
scaffold_16	spliced_intron	8581350	8581577	+	asmbl_17205,asmbl_17206	none	STRG.19476.1,STRG.19476.2,blat.proc3829881.chain_350,blat.proc3829881.chain_351	4	blat.proc3829881.chain_349	1
scaffold_9	ends_in_intron	9690405	9690405	-	asmbl_55202	none	Trinity_GG_23300_c1_g1_i1	1	STRG.11334.1,STRG.11334.2,STRG.11334.3,blat.proc3829891.chain_3512,blat.proc3829891.chain_3513,blat.proc3829891.chain_3514,blat.proc3829891.chain_3515	7
scaffold_9	spliced_intron	16558842	16559279	-	asmbl_55549	none	STRG.11797.5	1	STRG.11797.2,STRG.11797.3,STRG.11797.6,Trinity_GG_23481_c0_g1_i1,blat.proc3829893.chain_81	5
scaffold_3	retained_intron	17094055	17094262	-	asmbl_39484	none	Trinity_GG_19201_c0_g1_i4,blat.proc3829889.chain_21	2	STRG.3947.1,blat.proc3829889.chain_20	2
scaffold_28	spliced_intron	293837	294231	+	asmbl_37961	none	STRG.29243.1,blat.proc3829885.chain_2399	2	STRG.29243.3,blat.proc3829885.chain_2401	2
scaffold_28	retained_intron	3175623	3175744	-	asmbl_37462	none	blat.proc3829901.chain_2570	1	STRG.29510.1,blat.proc3829901.chain_2571	2
scaffold_16	starts_in_intron	3778315	3778315	+	asmbl_16942	none	blat.proc3829881.chain_26	1	STRG.19173.1,blat.proc3829881.chain_27	2
scaffold_6	spliced_intron	8460732	8460860	+	asmbl_47061,asmbl_47062,asmbl_47063,asmbl_47064	none	STRG.7708.1,STRG.7708.2,STRG.7708.3,STRG.7708.4,blat.proc3829875.chain_72,blat.proc3829875.chain_73	6	blat.proc3829875.chain_74	1
scaffold_2	retained_intron	7241660	7241753	+	asmbl_24586	none	blat.proc3829871.chain_2165	1	STRG.2061.1,blat.proc3829871.chain_2164,blat.proc3829871.chain_2166,blat.proc3829871.chain_2168,blat.proc3829871.chain_2169,blat.proc3829871.chain_2170,blat.proc3829871.chain_2171,blat.proc3829871.chain_2172	8
scaffold_12	starts_in_intron	10020567	10020567	-	asmbl_7846	none	blat.proc3829893.chain_3276	1	STRG.14962.1,blat.proc3829893.chain_3275	2
scaffold_2	retained_intron	9789776	9789962	+	asmbl_24722,asmbl_24724	none	blat.proc3829871.chain_2216,blat.proc3829871.chain_2220	2	STRG.2185.1,blat.proc3829871.chain_2217,blat.proc3829871.chain_2219,blat.proc3829871.chain_2221,blat.proc3829871.chain_2222	5
scaffold_19	retained_intron	8219321	8219725	-	asmbl_21491	none	STRG.22259.2,blat.proc3829897.chain_2994	2	STRG.22259.1,blat.proc3829897.chain_2995	2
scaffold_3	alt_donor	4304754	4304755	-	asmbl_38755	none	STRG.3128.2	1	STRG.3128.1	1
scaffold_23	retained_intron	1576741	1576856	+	asmbl_30647	none	Trinity_GG_14161_c0_g1_i2,blat.proc3829883.chain_2541	2	STRG.25617.1,blat.proc3829883.chain_2542	2
scaffold_14	alternate_exon	1377486	1377641	-	asmbl_12855,asmbl_12856,asmbl_12858	none	STRG.16775.1,STRG.16775.2,blat.proc3829895.chain_1487,blat.proc3829895.chain_1488,blat.proc3829895.chain_1489	5	blat.proc3829895.chain_1490	1
scaffold_25	retained_exon	2689708	2689825	+	asmbl_33399,asmbl_33401	none	STRG.27213.2,blat.proc3829885.chain_261	2	STRG.27213.1	1
scaffold_12	retained_intron	4722673	4722768	-	asmbl_7567,asmbl_7568	none	STRG.14636.2,blat.proc3829893.chain_3004	2	blat.proc3829893.chain_3003	1
scaffold_16	alt_donor	5805830	5805831	+	asmbl_17020,asmbl_17021	none	STRG.19311.3,Trinity_GG_10534_c0_g1_i2,blat.proc3829881.chain_94	3	STRG.19311.1,Trinity_GG_10534_c0_g1_i4,blat.proc3829881.chain_95	3
scaffold_12	spliced_intron	12307824	12308727	+	asmbl_8951,asmbl_8954,asmbl_8955	none	STRG.15117.4,STRG.15117.6,blat.proc3829877.chain_3594	3	STRG.15117.3,blat.proc3829877.chain_3595	2
scaffold_19	retained_intron	13154957	13155027	-	asmbl_21824,asmbl_21825	none	STRG.22626.3,blat.proc3829897.chain_3408	2	STRG.22626.2,blat.proc3829897.chain_3410	2
scaffold_13	alternate_exon	7506711	7508236	-	asmbl_9844,asmbl_9845,asmbl_9851	none	STRG.16034.2,Trinity_GG_26030_c0_g1_i10,Trinity_GG_26030_c0_g1_i9,blat.proc3829895.chain_816,blat.proc3829895.chain_820	5	STRG.16034.3,STRG.16034.4,Trinity_GG_26030_c0_g1_i3,Trinity_GG_26030_c0_g1_i4,blat.proc3829895.chain_812,blat.proc3829895.chain_819	6
scaffold_21	alt_donor	8137262	8137263	-	asmbl_27911,asmbl_27914	none	blat.proc3829899.chain_1382,blat.proc3829899.chain_1387	2	blat.proc3829899.chain_1383	1
scaffold_3	spliced_intron	6659747	6660509	+	asmbl_40062,asmbl_40063,asmbl_40064,asmbl_40065,asmbl_40067,asmbl_40070,asmbl_40071	none	STRG.3290.1,STRG.3290.2,Trinity_GG_1861_c0_g1_i10,blat.proc3829871.chain_3460,blat.proc3829871.chain_3461,blat.proc3829871.chain_3464,blat.proc3829871.chain_3469,blat.proc3829871.chain_3471	8	STRG.3290.3,Trinity_GG_1861_c0_g1_i1,Trinity_GG_1861_c0_g1_i4,blat.proc3829871.chain_3462,blat.proc3829871.chain_3463	5
scaffold_14	ends_in_intron	15232352	15232352	+	asmbl_12560	none	STRG.17734.1,Trinity_GG_9753_c0_g1_i1,blat.proc3829879.chain_2404	3	STRG.17734.2	1
scaffold_21	retained_intron	6818461	6818654	+	asmbl_28719,asmbl_28720,asmbl_28721	none	blat.proc3829883.chain_1301,blat.proc3829883.chain_1303,blat.proc3829883.chain_1304	3	STRG.24196.1,blat.proc3829883.chain_1300,blat.proc3829883.chain_1302	3
scaffold_6	alternate_exon	13000695	13003403	-	asmbl_48806	none	Trinity_GG_21547_c0_g1_i15,blat.proc3829891.chain_274	2	STRG.8061.9,blat.proc3829891.chain_276	2
scaffold_2	retained_exon	4240685	4240787	-	asmbl_23080,asmbl_23081	none	STRG.1859.1,STRG.1859.2,blat.proc3829887.chain_1733,blat.proc3829887.chain_1734	4	STRG.1859.3	1
scaffold_10	spliced_intron	9555421	9557098	+	asmbl_4676,asmbl_4681	none	STRG.12692.2,STRG.12692.4,blat.proc3829877.chain_1283	3	STRG.12692.5	1
scaffold_11	ends_in_intron	7998512	7998512	-	asmbl_6791	none	Trinity_GG_24740_c0_g1_i1,blat.proc3829893.chain_2260	2	STRG.13794.1,blat.proc3829893.chain_2261	2
scaffold_12	alt_donor	13391506	13391507	-	asmbl_8077	none	blat.proc3829893.chain_3544	1	STRG.15208.1,STRG.15208.2,STRG.15208.3,blat.proc3829893.chain_3545,blat.proc3829893.chain_3546,blat.proc3829893.chain_3547,blat.proc3829893.chain_3548	7
scaffold_21	ends_in_intron	10038329	10038329	-	asmbl_28030	none	STRG.24460.2	1	STRG.24460.1	1
scaffold_1	spliced_intron	854040	854190	+	asmbl_1427	none	STRG.42.5	1	STRG.42.1	1
scaffold_14	starts_in_intron	4154288	4154288	+	asmbl_11959,asmbl_11960	none	Trinity_GG_9341_c0_g1_i1,Trinity_GG_9341_c0_g1_i4	2	STRG.16957.1,STRG.16957.2,STRG.16957.3,Trinity_GG_9341_c0_g1_i2	4
scaffold_4	alt_donor	6286677	6286678	-	asmbl_41407	none	STRG.4498.2,Trinity_GG_19560_c0_g1_i1,blat.proc3829889.chain_663	3	STRG.4498.1,Trinity_GG_19560_c0_g1_i2,Trinity_GG_19560_c0_g1_i6,blat.proc3829889.chain_665,blat.proc3829889.chain_666	5
scaffold_5	spliced_intron	16246188	16246207	+	asmbl_44723	none	STRG.6801.2	1	STRG.6801.1,Trinity_GG_3683_c0_g1_i2,Trinity_GG_3683_c0_g1_i3,blat.proc3829873.chain_2858	4
scaffold_28	alt_donor	7843840	7843841	-	asmbl_37750	none	STRG.29833.1,blat.proc3829901.chain_2951	2	STRG.29833.2,blat.proc3829901.chain_2952	2
scaffold_13	retained_exon	2339179	2340134	+	asmbl_10574,asmbl_10576,asmbl_10579,asmbl_10582,asmbl_10585,asmbl_10588,asmbl_10589,asmbl_10590,asmbl_10591	none	STRG.15543.10,STRG.15543.3,STRG.15543.4,STRG.15543.6,STRG.15543.7,STRG.15543.9,blat.proc3829879.chain_159,blat.proc3829879.chain_161,blat.proc3829879.chain_162,blat.proc3829879.chain_164	10	blat.proc3829879.chain_156,blat.proc3829879.chain_163	2
scaffold_5	spliced_intron	108645	109025	-	asmbl_45142,asmbl_45143	none	STRG.5570.1,STRG.5570.2	2	Trinity_GG_20162_c0_g1_i5	1
scaffold_18	ends_in_intron	13807635	13807635	+	asmbl_21057	none	Trinity_GG_12056_c3_g1_i1,blat.proc3829881.chain_2764	2	STRG.21804.2,Trinity_GG_12056_c1_g1_i4,blat.proc3829881.chain_2761	3
scaffold_4	retained_intron	5231186	5231400	-	asmbl_41311,asmbl_41313	none	Trinity_GG_19430_c0_g1_i1,blat.proc3829889.chain_438,blat.proc3829889.chain_440	3	STRG.4417.2,STRG.4417.3,STRG.4417.5,blat.proc3829889.chain_436,blat.proc3829889.chain_437	5
scaffold_9	skipped_exon	16282211	16284224	-	asmbl_55529	none	STRG.11770.1,blat.proc3829893.chain_149	2	STRG.11770.2,blat.proc3829893.chain_148	2
scaffold_22	alt_donor	10682750	10682751	-	asmbl_30387	none	STRG.25391.3	1	STRG.25391.1,STRG.25391.2	2
scaffold_9	ends_in_intron	3382438	3382438	-	asmbl_54861	none	Trinity_GG_23094_c0_g1_i3,blat.proc3829891.chain_3127	2	STRG.10938.1	1
scaffold_20	ends_in_intron	6630767	6630767	-	asmbl_26759	none	blat.proc3829899.chain_262	1	STRG.23226.1,blat.proc3829899.chain_263	2
scaffold_2	retained_intron	14279595	14279835	+	asmbl_24927,asmbl_24930	none	STRG.2425.4,blat.proc3829871.chain_2542	2	STRG.2425.1,STRG.2425.2,STRG.2425.3,blat.proc3829871.chain_2546	4
scaffold_1	ends_in_intron	17688177	17688177	-	asmbl_1062	none	blat.proc3829887.chain_1076	1	STRG.1241.1,blat.proc3829887.chain_1075	2
scaffold_4	alt_donor	6499060	6499061	-	asmbl_41422	none	STRG.4511.1,blat.proc3829889.chain_656	2	STRG.4511.2,blat.proc3829889.chain_657	2
scaffold_28	retained_intron	221848	222198	-	asmbl_37224,asmbl_37225	none	STRG.29227.1,STRG.29227.3	2	STRG.29227.2	1
scaffold_14	alt_acceptor	561569	561570	+	asmbl_11734	none	STRG.16726.2	1	STRG.16726.1,Trinity_GG_9210_c0_g1_i3,Trinity_GG_9210_c1_g1_i1,blat.proc3829879.chain_1447,blat.proc3829879.chain_1449	5
scaffold_5	spliced_intron	2536271	2536536	+	asmbl_43839,asmbl_43840	none	STRG.5769.3,blat.proc3829873.chain_1953	2	STRG.5769.2,blat.proc3829873.chain_1952	2
scaffold_9	alt_donor	3374670	3374671	+	asmbl_53875	none	blat.proc3829875.chain_3402	1	blat.proc3829875.chain_3400	1
scaffold_26	alt_acceptor	420302	420303	+	asmbl_35207	none	STRG.27840.7	1	STRG.27840.1,blat.proc3829885.chain_857	2
scaffold_15	starts_in_intron	15650119	15650119	+	asmbl_14765	none	Trinity_GG_10381_c0_g1_i1,blat.proc3829879.chain_3531	2	STRG.18946.1,blat.proc3829879.chain_3530	2
scaffold_26	ends_in_intron	5044969	5044969	+	asmbl_35469,asmbl_35479	none	blat.proc3829885.chain_1158,blat.proc3829885.chain_1164	2	STRG.28206.1,blat.proc3829885.chain_1156,blat.proc3829885.chain_1157,blat.proc3829885.chain_1159,blat.proc3829885.chain_1163,blat.proc3829885.chain_1167,blat.proc3829885.chain_1168,blat.proc3829885.chain_1169,blat.proc3829885.chain_1170	9
scaffold_15	ends_in_intron	9724003	9724003	+	asmbl_14350	none	blat.proc3829879.chain_3081	1	STRG.18476.1,STRG.18476.2,blat.proc3829879.chain_3079,blat.proc3829879.chain_3080	4
scaffold_13	retained_intron	7719414	7719504	-	asmbl_9867	none	blat.proc3829895.chain_745	1	STRG.16043.1,STRG.16043.2,Trinity_GG_26001_c0_g1_i3,blat.proc3829895.chain_746	4
scaffold_18	alt_donor	8913580	8913581	-	asmbl_20081	none	STRG.21550.2	1	STRG.21550.3,blat.proc3829897.chain_2394,blat.proc3829897.chain_2398	3
scaffold_8	alt_donor	18250261	18250262	-	asmbl_53538,asmbl_53539,asmbl_53542	none	STRG.10723.1,blat.proc3829891.chain_2924,blat.proc3829891.chain_2925	3	STRG.10723.3,STRG.10723.4,blat.proc3829891.chain_2921,blat.proc3829891.chain_2923	4
scaffold_20	alt_donor	1625630	1625631	-	asmbl_26524,asmbl_26525	none	STRG.22888.1,STRG.22888.2	2	STRG.22888.3	1
scaffold_3	alt_acceptor	3085019	3085020	+	asmbl_39889	none	STRG.3053.2	1	STRG.3053.1	1
scaffold_23	spliced_intron	811002	811092	-	asmbl_31325	none	STRG.25556.3,Trinity_GG_31307_c0_g1_i7,blat.proc3829899.chain_2667	3	Trinity_GG_31307_c0_g1_i9,blat.proc3829899.chain_2675	2
scaffold_18	alternate_exon	12935426	12935616	+	asmbl_21003	none	STRG.21731.2	1	STRG.21731.1,blat.proc3829897.chain_2535	2
scaffold_2	starts_in_intron	1762011	1762011	-	asmbl_22892	none	blat.proc3829887.chain_1445	1	STRG.1649.1,blat.proc3829887.chain_1446	2
scaffold_8	retained_exon	12693353	12693373	+	asmbl_52319,asmbl_52320,asmbl_52321	none	STRG.10436.1,STRG.10436.2,blat.proc3829875.chain_2949	3	blat.proc3829875.chain_2945,blat.proc3829875.chain_2946,blat.proc3829875.chain_2948	3
scaffold_4	starts_in_intron	19216387	19216387	+	asmbl_43473	none	Trinity_GG_3032_c0_g1_i3,blat.proc3829873.chain_1736	2	STRG.5503.1,blat.proc3829873.chain_1737	2
scaffold_3	alt_donor	11977944	11977945	+	asmbl_40338	none	STRG.3621.3	1	STRG.3621.1,STRG.3621.2,Trinity_GG_2035_c0_g1_i1,Trinity_GG_2035_c0_g1_i2,blat.proc3829873.chain_20,blat.proc3829873.chain_21	6
scaffold_23	skipped_exon	6330942	6332799	+	asmbl_30907	none	STRG.25966.3,blat.proc3829883.chain_2837	2	blat.proc3829883.chain_2835	1
scaffold_27	starts_in_intron	1113964	1113964	+	asmbl_35957	none	Trinity_GG_15836_c0_g1_i2,blat.proc3829885.chain_1651	2	STRG.28591.1,STRG.28591.2,Trinity_GG_15836_c0_g1_i1,blat.proc3829885.chain_1650	4
scaffold_2	spliced_intron	4178724	4178813	+	asmbl_24362	none	STRG.1856.1,blat.proc3829871.chain_1927	2	blat.proc3829871.chain_1926	1
scaffold_12	alternate_exon	4215575	4217714	+	asmbl_8551,asmbl_8552	none	STRG.14588.2,STRG.14588.3	2	STRG.14588.1,blat.proc3829877.chain_3115,blat.proc3829877.chain_3117	3
scaffold_12	spliced_intron	6426744	6427106	-	asmbl_7669	none	STRG.14731.4	1	STRG.14731.5,Trinity_GG_25243_c1_g1_i1,blat.proc3829893.chain_3152	3
scaffold_6	alternate_exon	2900705	2900804	-	asmbl_48133	none	STRG.7282.1,blat.proc3829889.chain_3188	2	STRG.7282.2,blat.proc3829889.chain_3189	2
scaffold_12	alt_donor	7621022	7621023	+	asmbl_8735	none	STRG.14827.1,STRG.14827.3,blat.proc3829877.chain_3328	3	STRG.14827.2	1
scaffold_24	alternate_exon	9087731	9087792	+	asmbl_32505	none	STRG.26930.4,blat.proc3829885.chain_82	2	STRG.26930.1,STRG.26930.2,STRG.26930.3,blat.proc3829885.chain_81,blat.proc3829885.chain_84	5
scaffold_4	retained_intron	16311395	16311679	-	asmbl_41902	none	blat.proc3829889.chain_1230	1	STRG.5204.1,blat.proc3829889.chain_1229,blat.proc3829889.chain_1231	3
scaffold_7	starts_in_intron	8073558	8073558	+	asmbl_50838	none	Trinity_GG_4950_c0_g1_i1,blat.proc3829875.chain_1394	2	STRG.9038.1,STRG.9038.2,STRG.9038.3	3
scaffold_14	retained_intron	15470363	15470821	+	asmbl_12588	none	STRG.17772.2,Trinity_GG_9774_c0_g1_i7,blat.proc3829879.chain_2451,blat.proc3829879.chain_2454	4	STRG.17772.1	1
scaffold_1	retained_exon	20967252	20967429	+	asmbl_2653	none	STRG.1429.1,blat.proc3829871.chain_1495	2	STRG.1429.2	1
scaffold_14	retained_intron	13897914	13898395	+	asmbl_12501	none	blat.proc3829879.chain_2353	1	STRG.17653.1,STRG.17653.2,STRG.17653.3,STRG.17653.4,STRG.17653.5,blat.proc3829879.chain_2349	6
scaffold_10	alt_acceptor	4035044	4035045	+	asmbl_4380	none	STRG.12235.2	1	STRG.12235.1,blat.proc3829877.chain_917	2
scaffold_10	skipped_exon	9060945	9062853	-	asmbl_3570	none	STRG.12643.1,blat.proc3829893.chain_1168	2	STRG.12643.2,blat.proc3829893.chain_1169	2
scaffold_1	alt_acceptor	5646087	5646088	+	asmbl_1733,asmbl_1736	none	STRG.357.3,STRG.357.4,blat.proc3829871.chain_415	3	STRG.357.1,STRG.357.2,blat.proc3829871.chain_413,blat.proc3829871.chain_414	4
scaffold_8	skipped_exon	1338884	1340796	+	asmbl_51680	none	blat.proc3829875.chain_2147	1	STRG.9754.1	1
scaffold_1	retained_exon	849738	849801	+	asmbl_1416,asmbl_1418	none	STRG.41.2,STRG.41.4,Trinity_GG_29_c0_g1_i1,blat.proc3829871.chain_50	4	STRG.41.1,STRG.41.3,Trinity_GG_29_c0_g1_i2,blat.proc3829871.chain_52	4
scaffold_9	retained_intron	7025897	7025977	+	asmbl_54111	none	Trinity_GG_6261_c1_g1_i1,blat.proc3829875.chain_3730	2	STRG.11203.1,blat.proc3829875.chain_3729	2
scaffold_15	skipped_exon	15321640	15324392	+	asmbl_14697	none	STRG.18911.2,Trinity_GG_10357_c0_g1_i1,blat.proc3829879.chain_3469	3	STRG.18911.1	1
scaffold_23	retained_exon	4100078	4100213	-	asmbl_31552	none	blat.proc3829899.chain_2934	1	STRG.25802.2	1
scaffold_6	ends_in_intron	5664063	5664063	+	asmbl_46912	none	blat.proc3829873.chain_3630	1	STRG.7521.1,Trinity_GG_4111_c0_g1_i1,blat.proc3829873.chain_3631	3
scaffold_28	starts_in_intron	5580590	5580590	+	asmbl_38292	none	Trinity_GG_16454_c0_g1_i1,blat.proc3829885.chain_2795	2	STRG.29670.1,STRG.29670.2,Trinity_GG_16454_c0_g1_i4,Trinity_GG_16454_c0_g1_i5,Trinity_GG_16454_c0_g1_i6,blat.proc3829885.chain_2793,blat.proc3829885.chain_2796,blat.proc3829885.chain_2797	8
scaffold_10	alt_acceptor	8335736	8335737	+	asmbl_4593	none	STRG.12585.2	1	STRG.12585.1,Trinity_GG_6944_c0_g1_i2,blat.proc3829877.chain_1165	3
scaffold_5	starts_in_intron	19354097	19354097	-	asmbl_46275,asmbl_46276	none	STRG.7024.1,blat.proc3829889.chain_3001	2	STRG.7024.2,Trinity_GG_20921_c1_g1_i1,Trinity_GG_20921_c1_g1_i2,blat.proc3829889.chain_2999,blat.proc3829889.chain_3000	5
scaffold_15	ends_in_intron	5653577	5653577	+	asmbl_14158	none	blat.proc3829879.chain_2874	1	STRG.18244.1,blat.proc3829879.chain_2873	2
scaffold_10	retained_intron	8896299	8896584	-	asmbl_3532,asmbl_3533	none	blat.proc3829893.chain_1125,blat.proc3829893.chain_1129	2	STRG.12629.1,blat.proc3829893.chain_1127,blat.proc3829893.chain_1130,blat.proc3829893.chain_1131,blat.proc3829893.chain_1132,blat.proc3829893.chain_1133,blat.proc3829893.chain_1134,blat.proc3829893.chain_1135,blat.proc3829893.chain_1136	9
scaffold_18	spliced_intron	8726290	8726425	+	asmbl_20883,asmbl_20884,asmbl_20885,asmbl_20887,asmbl_20888	none	STRG.21533.1,STRG.21533.2,STRG.21533.3,blat.proc3829881.chain_2482,blat.proc3829881.chain_2483,blat.proc3829881.chain_2484,blat.proc3829881.chain_2485,blat.proc3829881.chain_2488	8	STRG.21533.5,STRG.21533.6,Trinity_GG_11882_c0_g1_i2,blat.proc3829881.chain_2486,blat.proc3829881.chain_2487	5
scaffold_18	retained_exon	7867647	7867915	+	asmbl_20822,asmbl_20823,asmbl_20829	none	STRG.21477.2,STRG.21477.3,Trinity_GG_11877_c0_g1_i14,Trinity_GG_11877_c0_g1_i7,blat.proc3829881.chain_2468,blat.proc3829881.chain_2469,blat.proc3829881.chain_2471	7	STRG.21477.5,blat.proc3829881.chain_2470	2
scaffold_18	alt_donor	8401454	8401455	+	asmbl_20859	none	STRG.21503.2	1	STRG.21503.1,blat.proc3829881.chain_2515	2
scaffold_11	spliced_intron	8085021	8085159	-	asmbl_6818	none	STRG.13804.1,Trinity_GG_24745_c0_g1_i2,blat.proc3829893.chain_2269	3	Trinity_GG_24745_c0_g1_i1,blat.proc3829893.chain_2270	2
scaffold_13	alt_donor	16190528	16190529	-	asmbl_10252	none	STRG.16653.1	1	STRG.16653.2	1
scaffold_15	spliced_intron	15188079	15189525	+	asmbl_14681,asmbl_14690	none	blat.proc3829879.chain_3473,blat.proc3829879.chain_3487	2	blat.proc3829879.chain_3472,blat.proc3829879.chain_3478,blat.proc3829879.chain_3480,blat.proc3829879.chain_3485,blat.proc3829879.chain_3486	5
scaffold_8	retained_exon	15335814	15336002	+	asmbl_52393	none	STRG.10550.2,blat.proc3829875.chain_3040	2	STRG.10550.1,blat.proc3829875.chain_3039	2
scaffold_21	retained_intron	7426114	7426200	-	asmbl_27832	none	blat.proc3829899.chain_1347	1	STRG.24262.1,blat.proc3829899.chain_1344	2
scaffold_6	retained_intron	8173890	8174001	-	asmbl_48474,asmbl_48478	none	Trinity_GG_21366_c0_g1_i14,Trinity_GG_21366_c0_g1_i3,blat.proc3829889.chain_3717,blat.proc3829889.chain_3722	4	STRG.7691.1,STRG.7691.2,blat.proc3829889.chain_3713,blat.proc3829889.chain_3716,blat.proc3829889.chain_3719,blat.proc3829889.chain_3720,blat.proc3829889.chain_3721,blat.proc3829889.chain_3724	8
scaffold_23	ends_in_intron	2220849	2220849	-	asmbl_31431	none	Trinity_GG_31318_c3_g1_i1,blat.proc3829899.chain_2695	2	STRG.25677.4	1
scaffold_3	alt_acceptor	14668720	14668721	+	asmbl_40503	none	STRG.3808.2,Trinity_GG_2137_c0_g1_i1,blat.proc3829873.chain_211	3	STRG.3808.1,STRG.3808.3,Trinity_GG_2137_c0_g1_i3,blat.proc3829873.chain_212	4
scaffold_18	spliced_intron	206330	206510	+	asmbl_20299	none	STRG.20965.2,Trinity_GG_11543_c0_g1_i6,blat.proc3829881.chain_1837	3	Trinity_GG_11543_c0_g1_i1,blat.proc3829881.chain_1838	2
scaffold_10	alt_acceptor	17687724	17687725	+	asmbl_5065	none	STRG.13211.2	1	STRG.13211.1	1
scaffold_5	spliced_intron	7776853	7776926	+	asmbl_44174	none	STRG.6152.1,blat.proc3829873.chain_2308	2	blat.proc3829873.chain_2307	1
scaffold_3	spliced_intron	5529821	5529991	-	asmbl_38807	none	STRG.3223.1	1	blat.proc3829887.chain_2917	1
scaffold_23	retained_intron	2151002	2151100	-	asmbl_31414	none	STRG.25664.3,blat.proc3829899.chain_2767	2	STRG.25664.1,STRG.25664.2,blat.proc3829899.chain_2766	3
scaffold_20	starts_in_intron	1579735	1579735	+	asmbl_25588	none	blat.proc3829901.chain_460	1	STRG.22869.1	1
scaffold_2	retained_intron	7242608	7242683	+	asmbl_24585,asmbl_24587,asmbl_24590	none	blat.proc3829871.chain_2164,blat.proc3829871.chain_2166,blat.proc3829871.chain_2171	3	STRG.2061.1,blat.proc3829871.chain_2168,blat.proc3829871.chain_2169,blat.proc3829871.chain_2170,blat.proc3829871.chain_2172	5
scaffold_8	spliced_intron	10601114	10601193	-	asmbl_53111	none	STRG.10288.1,blat.proc3829891.chain_2432	2	Trinity_GG_22735_c0_g1_i2,blat.proc3829891.chain_2431	2
scaffold_10	retained_exon	4057952	4057995	-	asmbl_3166,asmbl_3169	none	STRG.12237.2,STRG.12237.4,blat.proc3829893.chain_709,blat.proc3829893.chain_710	4	STRG.12237.1,STRG.12237.3,STRG.12237.6,blat.proc3829893.chain_706,blat.proc3829893.chain_707	5
scaffold_7	retained_intron	8295633	8296154	-	asmbl_49806	none	STRG.9056.3,Trinity_GG_22080_c0_g1_i2,blat.proc3829891.chain_1234,blat.proc3829891.chain_1236	4	STRG.9056.1,STRG.9056.2,STRG.9056.4,blat.proc3829891.chain_1235,blat.proc3829891.chain_1237,blat.proc3829891.chain_1238	6
scaffold_23	alternate_exon	1571309	1571487	-	asmbl_31378	none	STRG.25616.2,Trinity_GG_31344_c0_g1_i1,blat.proc3829899.chain_2735	3	STRG.25616.1,Trinity_GG_31344_c0_g1_i2,blat.proc3829899.chain_2734	3
scaffold_8	alt_donor	10578385	10578386	-	asmbl_53107	none	STRG.10286.1	1	STRG.10286.2	1
scaffold_21	alternate_exon	5778309	5779864	-	asmbl_27718,asmbl_27719,asmbl_27720,asmbl_27723	none	STRG.24099.1,STRG.24099.2,STRG.24099.3,blat.proc3829899.chain_1196,blat.proc3829899.chain_1200	5	blat.proc3829899.chain_1198	1
scaffold_4	alternate_exon	248696	249449	+	asmbl_42418	none	STRG.4120.2	1	Trinity_GG_2300_c0_g1_i1,blat.proc3829873.chain_494	2
scaffold_28	spliced_intron	4562120	4562213	-	asmbl_37537,asmbl_37539	none	STRG.29610.1,Trinity_GG_33600_c0_g1_i1,Trinity_GG_33600_c0_g1_i4,blat.proc3829901.chain_2725,blat.proc3829901.chain_2726	5	STRG.29610.2,Trinity_GG_33600_c0_g1_i3,blat.proc3829901.chain_2727	3
scaffold_5	starts_in_intron	13235522	13235522	+	asmbl_44539	none	blat.proc3829873.chain_2684	1	STRG.6553.1,STRG.6553.2,STRG.6553.3,blat.proc3829873.chain_2683,blat.proc3829873.chain_2685	5
scaffold_14	alt_acceptor	4154674	4154675	+	asmbl_11957,asmbl_11959	none	STRG.16957.3,Trinity_GG_9341_c0_g1_i4	2	STRG.16957.1,STRG.16957.2,Trinity_GG_9341_c0_g1_i1,Trinity_GG_9341_c0_g1_i2	4
scaffold_27	retained_intron	2047111	2047352	+	asmbl_36024	none	blat.proc3829885.chain_1708	1	STRG.28673.1,blat.proc3829885.chain_1707	2
scaffold_19	ends_in_intron	2655426	2655426	-	asmbl_21264	none	Trinity_GG_29249_c0_g1_i2,blat.proc3829897.chain_2703	2	STRG.21941.1,blat.proc3829897.chain_2702	2
scaffold_5	starts_in_intron	15764284	15764284	+	asmbl_44685	none	blat.proc3829873.chain_2876	1	STRG.6763.1,blat.proc3829873.chain_2874,blat.proc3829873.chain_2875,blat.proc3829873.chain_2877,blat.proc3829873.chain_2880,blat.proc3829873.chain_2881	6
scaffold_21	retained_intron	7508102	7508305	-	asmbl_27854	none	Trinity_GG_30512_c0_g1_i1,blat.proc3829899.chain_1281	2	STRG.24270.1,blat.proc3829899.chain_1282	2
scaffold_10	retained_exon	6018625	6018961	-	asmbl_3335	none	STRG.12424.1,blat.proc3829893.chain_896	2	blat.proc3829893.chain_893	1
scaffold_7	retained_intron	5928824	5929865	+	asmbl_50713	none	STRG.8891.1,Trinity_GG_4833_c0_g1_i4,blat.proc3829875.chain_1204	3	blat.proc3829875.chain_1202	1
scaffold_18	spliced_intron	11296913	11297076	-	asmbl_20158,asmbl_20159	none	STRG.21663.1,blat.proc3829897.chain_2466,blat.proc3829897.chain_2468	3	Trinity_GG_29109_c0_g1_i1,blat.proc3829897.chain_2467	2
scaffold_23	alternate_exon	7656286	7656401	+	asmbl_31003	none	blat.proc3829883.chain_2934	1	blat.proc3829883.chain_2932,blat.proc3829883.chain_2933	2
scaffold_9	spliced_intron	571057	571140	+	asmbl_53753	none	blat.proc3829875.chain_3224	1	STRG.10779.2,STRG.10779.7	2
scaffold_2	ends_in_intron	5710392	5710392	-	asmbl_23187	none	blat.proc3829887.chain_1772	1	STRG.1960.1,blat.proc3829887.chain_1771	2
scaffold_15	ends_in_intron	10649400	10649400	-	asmbl_15463,asmbl_15464	none	STRG.18545.4,blat.proc3829895.chain_3322	2	STRG.18545.1,STRG.18545.3,blat.proc3829895.chain_3320,blat.proc3829895.chain_3321	4
scaffold_12	retained_intron	3352547	3352645	+	asmbl_8512	none	Trinity_GG_8028_c0_g1_i2	1	STRG.14544.1	1
scaffold_20	spliced_intron	8338716	8338886	-	asmbl_26900,asmbl_26906,asmbl_26907	none	STRG.23364.2,STRG.23364.3,blat.proc3829899.chain_434,blat.proc3829899.chain_435	4	STRG.23364.1,blat.proc3829899.chain_430,blat.proc3829899.chain_431,blat.proc3829899.chain_432,blat.proc3829899.chain_433	5
scaffold_13	alt_acceptor	3705936	3705937	-	asmbl_9523	none	STRG.15671.5,blat.proc3829895.chain_438	2	STRG.15671.1,STRG.15671.4,STRG.15671.6,blat.proc3829895.chain_439	4
scaffold_6	spliced_intron	126870	126945	-	asmbl_47966,asmbl_47967	none	blat.proc3829889.chain_3043,blat.proc3829889.chain_3044	2	STRG.7069.1	1
scaffold_8	alternate_exon	10008242	10008461	+	asmbl_52126	none	STRG.10249.2	1	STRG.10249.1,blat.proc3829875.chain_2754	2
scaffold_7	spliced_intron	12082966	12083010	+	asmbl_51099	none	STRG.9310.2	1	STRG.9310.1,Trinity_GG_5111_c0_g1_i1,Trinity_GG_5111_c0_g1_i2,Trinity_GG_5111_c0_g1_i3,blat.proc3829875.chain_1656,blat.proc3829875.chain_1657,blat.proc3829875.chain_1658,blat.proc3829875.chain_1660	8
scaffold_25	retained_intron	4549453	4549681	-	asmbl_34194	none	STRG.27375.2	1	STRG.27375.1,blat.proc3829901.chain_689	2
scaffold_15	alt_acceptor	8789450	8789451	+	asmbl_14296	none	STRG.18412.2	1	STRG.18412.1,blat.proc3829879.chain_3020	2
scaffold_9	retained_intron	11551708	11551928	-	asmbl_55259,asmbl_55261	none	STRG.11459.2,blat.proc3829891.chain_3585,blat.proc3829891.chain_3588	3	STRG.11459.1,blat.proc3829891.chain_3587,blat.proc3829891.chain_3589	3
scaffold_5	skipped_exon	9692649	9693303	+	asmbl_44295,asmbl_44297	none	STRG.6282.2,STRG.6282.3,blat.proc3829873.chain_2436	3	STRG.6282.1,blat.proc3829873.chain_2435	2
scaffold_25	retained_exon	4319475	4319528	+	asmbl_33483,asmbl_33486,asmbl_33487	none	STRG.27342.1,STRG.27342.3,Trinity_GG_15082_c0_g1_i1,blat.proc3829885.chain_382,blat.proc3829885.chain_385	5	STRG.27342.2,Trinity_GG_15082_c0_g1_i2,blat.proc3829885.chain_383,blat.proc3829885.chain_384	4
scaffold_16	alt_acceptor	3995791	3995792	+	asmbl_16950	none	STRG.19196.3,blat.proc3829881.chain_41	2	STRG.19196.1,STRG.19196.2,blat.proc3829881.chain_42	3
scaffold_7	starts_in_intron	13015989	13015989	-	asmbl_50098,asmbl_50099	none	blat.proc3829891.chain_1652,blat.proc3829891.chain_1657	2	STRG.9408.1	1
scaffold_16	alternate_exon	11335572	11336789	+	asmbl_17385	none	STRG.19652.5	1	STRG.19652.1,STRG.19652.2,blat.proc3829881.chain_553	3
scaffold_19	ends_in_intron	6676710	6676710	-	asmbl_21430	none	Trinity_GG_29373_c2_g1_i1,blat.proc3829897.chain_2925	2	STRG.22172.1,STRG.22172.2,blat.proc3829897.chain_2922	3
scaffold_16	retained_exon	10835886	10836029	+	asmbl_17361	none	STRG.19623.1,blat.proc3829881.chain_530	2	blat.proc3829881.chain_531	1
scaffold_8	alternate_exon	2851268	2851438	-	asmbl_52712	none	blat.proc3829891.chain_1946	1	STRG.9800.2,blat.proc3829891.chain_1949	2
scaffold_8	ends_in_intron	336681	336681	+	asmbl_51644	none	blat.proc3829875.chain_2161	1	STRG.9709.1,blat.proc3829875.chain_2162	2
scaffold_7	skipped_exon	8507767	8510079	+	asmbl_50887	none	STRG.9068.1,blat.proc3829875.chain_1527	2	STRG.9068.4,blat.proc3829875.chain_1525	2
scaffold_10	ends_in_intron	6884696	6884696	-	asmbl_3437	none	blat.proc3829893.chain_1001	1	STRG.12504.1,Trinity_GG_24005_c0_g1_i1,blat.proc3829893.chain_1000	3
scaffold_23	retained_exon	7632771	7632815	-	asmbl_31759	none	STRG.26056.1,blat.proc3829899.chain_3165	2	STRG.26056.2,blat.proc3829899.chain_3164	2
scaffold_10	spliced_intron	6867580	6867771	-	asmbl_3423	none	blat.proc3829893.chain_991,blat.proc3829893.chain_998	2	blat.proc3829893.chain_990,blat.proc3829893.chain_996	2
scaffold_10	spliced_intron	16531561	16531803	+	asmbl_4992,asmbl_4994	none	STRG.13112.1,blat.proc3829877.chain_1619,blat.proc3829877.chain_1621	3	STRG.13112.3,blat.proc3829877.chain_1622	2
scaffold_2	alternate_exon	13906691	13906759	-	asmbl_23554	none	STRG.2382.2	1	STRG.2382.1,blat.proc3829887.chain_2287,blat.proc3829887.chain_2288,blat.proc3829887.chain_2289,blat.proc3829887.chain_2290	5
scaffold_15	alt_donor	6793654	6793655	-	asmbl_15272	none	STRG.18288.2,blat.proc3829895.chain_3044	2	STRG.18288.3	1
scaffold_3	ends_in_intron	3237909	3237909	+	asmbl_39894	none	Trinity_GG_1771_c4_g1_i1,blat.proc3829871.chain_3315	2	STRG.3087.1,STRG.3087.2,STRG.3087.3,Trinity_GG_1771_c1_g1_i2,blat.proc3829871.chain_3310,blat.proc3829871.chain_3311	6
scaffold_2	skipped_exon	17613187	17615255	+	asmbl_25221	none	STRG.2650.3	1	STRG.2650.1,STRG.2650.2,Trinity_GG_1507_c1_g1_i1,blat.proc3829871.chain_2855,blat.proc3829871.chain_2856,blat.proc3829871.chain_2858	6
scaffold_18	retained_exon	824500	824550	+	asmbl_20354	none	blat.proc3829881.chain_1782	1	STRG.20996.1,blat.proc3829881.chain_1781	2
scaffold_22	skipped_exon	7120943	7123351	+	asmbl_29448,asmbl_29450	none	STRG.25032.2,Trinity_GG_13867_c0_g1_i3,blat.proc3829883.chain_2116,blat.proc3829883.chain_2118	4	STRG.25032.1,Trinity_GG_13867_c0_g1_i2,blat.proc3829883.chain_2115,blat.proc3829883.chain_2119	4
scaffold_22	retained_exon	9720834	9720993	+	asmbl_29599	none	STRG.25292.1,blat.proc3829883.chain_2231	2	STRG.25292.2	1
scaffold_11	alternate_exon	10181804	10181935	+	asmbl_5889,asmbl_5890	none	STRG.14019.1,STRG.14019.2,blat.proc3829877.chain_2496,blat.proc3829877.chain_2498	4	STRG.14019.3	1
scaffold_4	retained_exon	7150796	7150899	+	asmbl_42802,asmbl_42804,asmbl_42805	none	STRG.4558.2,STRG.4558.4,blat.proc3829873.chain_882,blat.proc3829873.chain_883,blat.proc3829873.chain_884	5	STRG.4558.1,STRG.4558.5	2
scaffold_19	alt_acceptor	12124311	12124312	+	asmbl_22556	none	blat.proc3829881.chain_3489	1	STRG.22527.1,Trinity_GG_12470_c1_g1_i2,blat.proc3829881.chain_3488,blat.proc3829881.chain_3490	4
scaffold_12	starts_in_intron	976627	976627	-	asmbl_7420	none	blat.proc3829893.chain_2837	1	STRG.14425.1,STRG.14425.2,STRG.14425.3,STRG.14425.4,blat.proc3829893.chain_2838,blat.proc3829893.chain_2839,blat.proc3829893.chain_2840	7
scaffold_9	alternate_exon	6905867	6907715	-	asmbl_55060	none	STRG.11190.2,blat.proc3829891.chain_3337	2	STRG.11190.1,Trinity_GG_23218_c0_g1_i1,Trinity_GG_23218_c0_g1_i5,blat.proc3829891.chain_3336,blat.proc3829891.chain_3339	5
scaffold_19	spliced_intron	7466932	7467251	+	asmbl_22261	none	Trinity_GG_12268_c0_g1_i3,blat.proc3829881.chain_3133	2	STRG.22210.1,blat.proc3829881.chain_3134	2
scaffold_7	skipped_exon	15598541	15599723	+	asmbl_51333,asmbl_51334	none	blat.proc3829875.chain_1996,blat.proc3829875.chain_1997	2	blat.proc3829875.chain_1995	1
scaffold_4	spliced_intron	4113453	4113870	-	asmbl_41222,asmbl_41224,asmbl_41225,asmbl_41226	none	STRG.4314.1,blat.proc3829889.chain_373,blat.proc3829889.chain_375,blat.proc3829889.chain_376,blat.proc3829889.chain_378	5	blat.proc3829889.chain_374	1
scaffold_26	starts_in_intron	6017219	6017219	+	asmbl_35596	none	STRG.28302.2	1	STRG.28302.1,blat.proc3829885.chain_1339,blat.proc3829885.chain_1340	3
scaffold_7	starts_in_intron	17737451	17737451	+	asmbl_51378	none	blat.proc3829875.chain_2073	1	STRG.9609.1,STRG.9609.2,blat.proc3829875.chain_2072,blat.proc3829875.chain_2074	4
scaffold_25	starts_in_intron	3092415	3092415	-	asmbl_34079	none	blat.proc3829901.chain_488	1	STRG.27230.1,STRG.27230.2,STRG.27230.3,blat.proc3829901.chain_489,blat.proc3829901.chain_490	5
scaffold_10	retained_exon	11970269	11971084	+	asmbl_4782	none	STRG.12831.1,blat.proc3829877.chain_1321	2	STRG.12831.3	1
scaffold_15	retained_intron	395669	395769	-	asmbl_14932	none	STRG.17880.2	1	STRG.17880.1,blat.proc3829895.chain_2583,blat.proc3829895.chain_2584	3
scaffold_11	spliced_intron	9832014	9832313	+	asmbl_5866,asmbl_5867,asmbl_5868,asmbl_5871,asmbl_5872,asmbl_5875	none	STRG.13996.1,STRG.13996.2,STRG.13996.3,STRG.13996.4,Trinity_GG_7729_c0_g1_i2,blat.proc3829877.chain_2505,blat.proc3829877.chain_2510,blat.proc3829877.chain_2512,blat.proc3829877.chain_2514	9	blat.proc3829877.chain_2508	1
scaffold_20	spliced_intron	11600743	11600915	-	asmbl_27096	none	STRG.23657.2	1	STRG.23657.1,STRG.23657.3	2
scaffold_15	retained_intron	8365621	8365937	-	asmbl_15360	none	blat.proc3829895.chain_3158	1	STRG.18387.2,blat.proc3829895.chain_3159	2
scaffold_4	spliced_intron	6286227	6286678	-	asmbl_41407	none	STRG.4498.2,Trinity_GG_19560_c0_g1_i1,blat.proc3829889.chain_663	3	Trinity_GG_19560_c0_g1_i9,blat.proc3829889.chain_662	2
scaffold_355	alt_donor	6457	6458	+	asmbl_40989	none	STRG.30274.2	1	STRG.30274.1	1
scaffold_11	retained_intron	10981968	10982289	-	asmbl_6987	none	STRG.14049.1,Trinity_GG_24863_c0_g1_i1,blat.proc3829893.chain_2467	3	STRG.14049.2	1
scaffold_1	starts_in_intron	11548128	11548128	-	asmbl_635	none	blat.proc3829887.chain_643	1	STRG.759.1,blat.proc3829887.chain_644	2
scaffold_6	retained_intron	5054843	5054934	-	asmbl_48330	none	STRG.7479.2,Trinity_GG_21226_c0_g1_i11,blat.proc3829889.chain_3509	3	STRG.7479.1,STRG.7479.3,blat.proc3829889.chain_3506,blat.proc3829889.chain_3508	4
scaffold_11	spliced_intron	13035297	13036295	-	asmbl_7094,asmbl_7096	none	STRG.14169.1,blat.proc3829893.chain_2575,blat.proc3829893.chain_2577	3	STRG.14169.3,Trinity_GG_24917_c0_g2_i1,blat.proc3829893.chain_2578	3
scaffold_21	retained_exon	2166517	2166597	-	asmbl_27459,asmbl_27461,asmbl_27462	none	STRG.23826.1,blat.proc3829899.chain_824,blat.proc3829899.chain_825,blat.proc3829899.chain_826	4	STRG.23826.2	1
scaffold_14	alt_acceptor	8306299	8306300	+	asmbl_12198,asmbl_12200	none	STRG.17241.1,blat.proc3829879.chain_1920,blat.proc3829879.chain_1921	3	STRG.17241.2	1
scaffold_2	starts_in_intron	5717277	5717277	+	asmbl_24460	none	Trinity_GG_1056_c0_g1_i2,blat.proc3829871.chain_1939	2	STRG.1962.1,STRG.1962.2,STRG.1962.3,blat.proc3829871.chain_1938	4
scaffold_18	alt_acceptor	647081	647082	+	asmbl_20344	none	STRG.20994.2	1	STRG.20994.1,Trinity_GG_11517_c0_g1_i1,Trinity_GG_11517_c0_g1_i4,Trinity_GG_11517_c0_g1_i6,blat.proc3829881.chain_1786,blat.proc3829881.chain_1788,blat.proc3829881.chain_1789	7
scaffold_14	retained_intron	11574210	11574361	-	asmbl_13485	none	blat.proc3829895.chain_2180	1	STRG.17490.1,STRG.17490.2,STRG.17490.3,STRG.17490.4,STRG.17490.5,blat.proc3829895.chain_2172,blat.proc3829895.chain_2173,blat.proc3829895.chain_2179	8
scaffold_4	retained_intron	17537231	17537656	+	asmbl_43393	none	STRG.5340.2,blat.proc3829873.chain_1618	2	STRG.5340.1,blat.proc3829873.chain_1619	2
scaffold_9	retained_intron	5473472	5473745	+	asmbl_54033	none	blat.proc3829875.chain_3612	1	STRG.11113.1,STRG.11113.2,Trinity_GG_6198_c0_g1_i3,blat.proc3829875.chain_3610,blat.proc3829875.chain_3611	5
scaffold_15	retained_intron	15413602	15413826	+	asmbl_14729,asmbl_14730,asmbl_14733,asmbl_14734,asmbl_14735,asmbl_14736	none	STRG.18922.3,STRG.18922.4,STRG.18922.5,blat.proc3829879.chain_3551,blat.proc3829879.chain_3552,blat.proc3829879.chain_3553,blat.proc3829879.chain_3556,blat.proc3829879.chain_3557	8	STRG.18922.1,STRG.18922.2,blat.proc3829879.chain_3555	3
scaffold_5	retained_intron	5843212	5843431	-	asmbl_45449	none	Trinity_GG_20386_c1_g1_i2	1	Trinity_GG_20386_c1_g1_i1	1
scaffold_10	skipped_exon	9360859	9363246	+	asmbl_4649	none	blat.proc3829877.chain_1197	1	STRG.12680.1,blat.proc3829877.chain_1198	2
scaffold_5	alt_acceptor	17843988	17843989	-	asmbl_46191	none	STRG.6923.1,Trinity_GG_20873_c0_g1_i1,blat.proc3829889.chain_2926	3	STRG.6923.2	1
scaffold_25	alt_donor	6068377	6068378	-	asmbl_34287,asmbl_34295	none	STRG.27475.1,blat.proc3829901.chain_717,blat.proc3829901.chain_722	3	blat.proc3829901.chain_721	1
scaffold_1	alt_acceptor	3680247	3680248	+	asmbl_1623	none	STRG.237.2,blat.proc3829871.chain_290,blat.proc3829871.chain_291	3	STRG.237.1,STRG.237.3,blat.proc3829871.chain_293	3
scaffold_14	starts_in_intron	209121	209121	-	asmbl_12776,asmbl_12777	none	STRG.16702.4,STRG.16702.5,Trinity_GG_26362_c0_g1_i4,blat.proc3829895.chain_1404	4	STRG.16702.1,STRG.16702.3,Trinity_GG_26362_c0_g1_i2,Trinity_GG_26362_c0_g1_i3,Trinity_GG_26362_c0_g1_i5,blat.proc3829895.chain_1402,blat.proc3829895.chain_1403,blat.proc3829895.chain_1405	8
scaffold_22	alt_donor	10044913	10044914	-	asmbl_30350	none	STRG.25340.2	1	STRG.25340.1,STRG.25340.4	2
scaffold_7	alternate_exon	6187912	6188065	+	asmbl_50730,asmbl_50731	none	STRG.8903.1,blat.proc3829875.chain_1327,blat.proc3829875.chain_1328,blat.proc3829875.chain_1329	4	STRG.8903.2,Trinity_GG_4908_c0_g1_i1,Trinity_GG_4908_c0_g1_i2,Trinity_GG_4908_c0_g1_i3	4
scaffold_2	ends_in_intron	7257951	7257951	+	asmbl_24593	none	STRG.2060.1,blat.proc3829871.chain_2143	2	STRG.2060.2,blat.proc3829871.chain_2142	2
scaffold_13	starts_in_intron	9533634	9533634	-	asmbl_9995	none	blat.proc3829895.chain_992	1	STRG.16202.1,STRG.16202.2,STRG.16202.3,STRG.16202.4,STRG.16202.5,blat.proc3829895.chain_990,blat.proc3829895.chain_991	7
scaffold_2	retained_intron	14562874	14562960	+	asmbl_24987	none	STRG.2454.3	1	STRG.2454.1,STRG.2454.2,STRG.2454.4,STRG.2454.5	4
scaffold_17	skipped_exon	12169998	12172330	+	asmbl_18393	none	STRG.20737.1,blat.proc3829881.chain_1531	2	STRG.20737.2,Trinity_GG_11355_c0_g1_i1,blat.proc3829881.chain_1530	3
scaffold_9	alternate_exon	4206117	4206311	+	asmbl_53925	none	blat.proc3829875.chain_3427	1	STRG.11013.2	1
scaffold_10	alternate_exon	7800308	7800445	-	asmbl_3472,asmbl_3473	none	STRG.12559.2,STRG.12559.3,blat.proc3829893.chain_1040	3	STRG.12559.1,blat.proc3829893.chain_1039	2
scaffold_506	alt_donor	2659	2660	+	asmbl_46455,asmbl_46458	none	STRG.30329.1,blat.proc3829885.chain_3373,blat.proc3829885.chain_3374	3	STRG.30329.2,blat.proc3829885.chain_3372	2
scaffold_2	spliced_intron	6679470	6679625	-	asmbl_23247	none	STRG.2026.3,Trinity_GG_18149_c0_g1_i5,blat.proc3829887.chain_1938	3	STRG.2026.1,Trinity_GG_18149_c0_g1_i3,blat.proc3829887.chain_1939	3
scaffold_1	spliced_intron	853703	853954	+	asmbl_1427	none	STRG.42.5	1	STRG.42.1	1
scaffold_13	spliced_intron	519849	520155	+	asmbl_10453,asmbl_10456,asmbl_10458	none	STRG.15434.2,STRG.15434.4,Trinity_GG_8491_c0_g1_i2,blat.proc3829879.chain_113,blat.proc3829879.chain_115	5	STRG.15434.1,STRG.15434.5,blat.proc3829879.chain_111,blat.proc3829879.chain_114,blat.proc3829879.chain_116	5
scaffold_20	alt_donor	6954891	6954892	-	asmbl_26777	none	STRG.23254.7	1	STRG.23254.2,STRG.23254.3,STRG.23254.5,STRG.23254.6,blat.proc3829899.chain_237,blat.proc3829899.chain_238,blat.proc3829899.chain_239	7
scaffold_6	starts_in_intron	3065482	3065482	+	asmbl_46759	none	blat.proc3829873.chain_3432	1	STRG.7310.1,STRG.7310.2,blat.proc3829873.chain_3430,blat.proc3829873.chain_3431	4
scaffold_3	alt_acceptor	14774411	14774412	-	asmbl_39372	none	STRG.3820.3	1	STRG.3820.1,STRG.3820.2,blat.proc3829887.chain_3623,blat.proc3829887.chain_3625	4
scaffold_12	spliced_intron	2987278	2987365	-	asmbl_7475	none	STRG.14524.1	1	STRG.14524.2,Trinity_GG_25109_c1_g1_i2	2
scaffold_15	starts_in_intron	5825237	5825237	-	asmbl_15248	none	Trinity_GG_27247_c0_g1_i3,blat.proc3829895.chain_2945	2	STRG.18250.1,blat.proc3829895.chain_2944,blat.proc3829895.chain_2946	3
scaffold_16	spliced_intron	10548755	10548950	+	asmbl_17351	none	blat.proc3829881.chain_454	1	STRG.19609.1,blat.proc3829881.chain_453	2
scaffold_340	retained_intron	4207	4444	+	asmbl_40969	none	Trinity_GG_16762_c0_g2_i1	1	STRG.30268.1	1
scaffold_13	retained_intron	8955171	8955239	+	asmbl_11146	none	STRG.16151.1,blat.proc3829879.chain_862	2	STRG.16151.2,STRG.16151.3,blat.proc3829879.chain_863,blat.proc3829879.chain_864,blat.proc3829879.chain_865	5
scaffold_18	alternate_exon	3915822	3920951	-	asmbl_19821,asmbl_19822,asmbl_19823,asmbl_19824	none	STRG.21192.2,STRG.21192.3,STRG.21192.4,STRG.21192.5	4	STRG.21192.1	1
scaffold_16	skipped_exon	11335047	11337136	+	asmbl_17384	none	STRG.19652.2	1	STRG.19652.1,blat.proc3829881.chain_553	2
scaffold_7	alternate_exon	11863946	11864118	-	asmbl_49984	none	blat.proc3829891.chain_1489	1	STRG.9297.1,STRG.9297.2	2
scaffold_2	alt_acceptor	4788731	4788732	+	asmbl_24406,asmbl_24408	none	STRG.1897.5,blat.proc3829871.chain_1853	2	STRG.1897.1,STRG.1897.3,blat.proc3829871.chain_1851,blat.proc3829871.chain_1854	4
scaffold_1	starts_in_intron	14275122	14275122	+	asmbl_2344	none	STRG.1020.3	1	STRG.1020.1,STRG.1020.2,blat.proc3829871.chain_1117,blat.proc3829871.chain_1118,blat.proc3829871.chain_1119	5
scaffold_2	starts_in_intron	18779901	18779901	-	asmbl_23842	none	STRG.2756.1,blat.proc3829887.chain_2591	2	STRG.2756.2	1
scaffold_13	retained_intron	2334729	2334862	+	asmbl_10564	none	STRG.15543.5,Trinity_GG_8511_c1_g1_i3,blat.proc3829879.chain_166	3	STRG.15543.2,blat.proc3829879.chain_174	2
scaffold_10	retained_intron	11909255	11909403	+	asmbl_4777,asmbl_4778	none	Trinity_GG_7071_c0_g1_i2,Trinity_GG_7071_c0_g1_i3,blat.proc3829877.chain_1400,blat.proc3829877.chain_1404	4	STRG.12815.1,STRG.12815.2,Trinity_GG_7071_c0_g1_i5,blat.proc3829877.chain_1401,blat.proc3829877.chain_1402,blat.proc3829877.chain_1403	6
scaffold_10	alt_acceptor	395062	395063	+	asmbl_4135,asmbl_4136	none	STRG.11918.1,STRG.11918.2,Trinity_GG_6634_c0_g1_i1,Trinity_GG_6634_c0_g1_i2,blat.proc3829877.chain_628,blat.proc3829877.chain_629	6	STRG.11918.3	1
scaffold_13	alternate_exon	15037855	15038095	-	asmbl_10189	none	blat.proc3829895.chain_1253	1	STRG.16541.1,blat.proc3829895.chain_1255	2
scaffold_2	alt_acceptor	481946	481947	-	asmbl_22829,asmbl_22830	none	STRG.1533.1,STRG.1533.3,blat.proc3829887.chain_1416	3	STRG.1533.2	1
scaffold_12	alt_donor	13167263	13167264	-	asmbl_8059	none	STRG.15188.2	1	STRG.15188.1	1
scaffold_14	retained_intron	6291638	6291779	+	asmbl_12045	none	Trinity_GG_9404_c0_g1_i4,blat.proc3829879.chain_1813	2	STRG.17067.1,blat.proc3829879.chain_1814	2
scaffold_1	spliced_intron	4874711	4874784	-	asmbl_225	none	STRG.296.2	1	STRG.296.3	1
scaffold_4	retained_exon	4922781	4922890	+	asmbl_42648,asmbl_42649	none	STRG.4392.1,STRG.4392.2,blat.proc3829873.chain_706,blat.proc3829873.chain_707	4	STRG.4392.3	1
scaffold_18	spliced_intron	13649190	13649215	+	asmbl_21048	none	blat.proc3829881.chain_2743	1	STRG.21786.2	1
scaffold_23	retained_intron	10331210	10331237	+	asmbl_31144	none	Trinity_GG_14478_c0_g1_i1	1	STRG.26228.3	1
scaffold_3	alt_acceptor	7972772	7972773	+	asmbl_40149	none	STRG.3381.2	1	STRG.3381.1,blat.proc3829871.chain_3494	2
scaffold_11	starts_in_intron	17206822	17206822	-	asmbl_7235	none	blat.proc3829893.chain_2784	1	STRG.14375.1,STRG.14375.2,blat.proc3829893.chain_2783,blat.proc3829893.chain_2785	4
scaffold_3	skipped_exon	6076986	6079075	-	asmbl_38849	none	STRG.3254.1,blat.proc3829887.chain_3026	2	STRG.3254.2,STRG.3254.3,blat.proc3829887.chain_3021,blat.proc3829887.chain_3023	4
scaffold_16	starts_in_intron	5510364	5510364	-	asmbl_16291,asmbl_16297	none	Trinity_GG_27832_c1_g1_i3,blat.proc3829897.chain_293,blat.proc3829897.chain_295	3	STRG.19300.1,STRG.19300.2,blat.proc3829897.chain_291,blat.proc3829897.chain_292	4
scaffold_7	starts_in_intron	1219598	1219598	+	asmbl_50465	none	STRG.8618.3	1	STRG.8618.1,STRG.8618.2,Trinity_GG_4734_c0_g1_i2,Trinity_GG_4734_c0_g1_i4	4
scaffold_6	retained_intron	19111383	19111555	+	asmbl_47820	none	STRG.8567.2,Trinity_GG_4689_c0_g1_i2,blat.proc3829875.chain_940	3	STRG.8567.1,STRG.8567.3,Trinity_GG_4689_c0_g1_i1,blat.proc3829875.chain_941	4
scaffold_19	spliced_intron	3683526	3683854	+	asmbl_22134,asmbl_22136,asmbl_22137	none	STRG.22046.2,STRG.22046.6,STRG.22046.7	3	STRG.22046.8,blat.proc3829881.chain_3002,blat.proc3829881.chain_3004	3
scaffold_6	spliced_intron	3052979	3053100	+	asmbl_46747	none	blat.proc3829873.chain_3448	1	Trinity_GG_4015_c0_g2_i1,blat.proc3829873.chain_3449	2
scaffold_23	alt_acceptor	5581100	5581101	+	asmbl_30878	none	blat.proc3829883.chain_2798	1	STRG.25909.1,STRG.25909.2,STRG.25909.3,blat.proc3829883.chain_2799,blat.proc3829883.chain_2801,blat.proc3829883.chain_2802,blat.proc3829883.chain_2803	7
scaffold_4	alt_acceptor	16569936	16569937	-	asmbl_41947	none	STRG.5231.2	1	STRG.5231.1,blat.proc3829889.chain_1305	2
scaffold_10	alternate_exon	11969824	11972133	+	asmbl_4782,asmbl_4783	none	STRG.12831.1,STRG.12831.3,Trinity_GG_7032_c1_g1_i1,blat.proc3829877.chain_1321,blat.proc3829877.chain_1324	5	STRG.12831.2,Trinity_GG_7032_c0_g1_i16,blat.proc3829877.chain_1316	3
scaffold_6	spliced_intron	14511822	14511873	+	asmbl_47559	none	STRG.8206.1	1	Trinity_GG_4518_c0_g1_i2,blat.proc3829875.chain_628	2
scaffold_1	alt_acceptor	5967880	5967881	-	asmbl_314	none	STRG.397.1,blat.proc3829887.chain_276	2	STRG.397.2,blat.proc3829887.chain_275	2
scaffold_11	alt_donor	5501897	5501898	-	asmbl_6641	none	blat.proc3829893.chain_2061	1	STRG.13608.1,blat.proc3829893.chain_2060	2
scaffold_17	retained_intron	10050958	10051155	+	asmbl_18285,asmbl_18287,asmbl_18288,asmbl_18289	none	STRG.20609.2,STRG.20609.3,Trinity_GG_11293_c0_g1_i5,blat.proc3829881.chain_1429,blat.proc3829881.chain_1430,blat.proc3829881.chain_1432	6	STRG.20609.1,blat.proc3829881.chain_1431	2
scaffold_12	alt_donor	11222406	11222407	-	asmbl_7924	none	STRG.15050.1,blat.proc3829893.chain_3442	2	STRG.15050.2,blat.proc3829893.chain_3441	2
scaffold_6	ends_in_intron	14038712	14038712	-	asmbl_48920	none	Trinity_GG_21651_c0_g1_i1,blat.proc3829891.chain_477	2	STRG.8154.1	1
scaffold_21	alt_donor	7008750	7008751	-	asmbl_27799,asmbl_27800	none	STRG.24222.1,STRG.24222.2,blat.proc3829899.chain_1273,blat.proc3829899.chain_1275	4	blat.proc3829899.chain_1274	1
scaffold_4	starts_in_intron	7267143	7267143	+	asmbl_42820	none	Trinity_GG_2542_c0_g1_i2,blat.proc3829873.chain_961	2	STRG.4560.2,STRG.4560.4,STRG.4560.6,STRG.4560.7,Trinity_GG_2542_c0_g1_i1,Trinity_GG_2542_c0_g1_i3,Trinity_GG_2542_c0_g1_i4,blat.proc3829873.chain_958,blat.proc3829873.chain_959,blat.proc3829873.chain_960	10
scaffold_2	retained_exon	3863661	3863789	-	asmbl_23036	none	STRG.1819.1,blat.proc3829887.chain_1594	2	STRG.1819.2	1
scaffold_3	starts_in_intron	13176357	13176357	+	asmbl_40395	none	blat.proc3829873.chain_80	1	STRG.3679.1,STRG.3679.2,STRG.3679.3,blat.proc3829873.chain_76,blat.proc3829873.chain_77,blat.proc3829873.chain_78,blat.proc3829873.chain_79	7
scaffold_10	alt_donor	46074	46075	-	asmbl_2831	none	STRG.11895.1	1	STRG.11895.2,Trinity_GG_23605_c0_g1_i1,blat.proc3829893.chain_294	3
scaffold_19	retained_intron	10121648	10121867	+	asmbl_22424	none	Trinity_GG_12345_c2_g1_i1,blat.proc3829881.chain_3264	2	STRG.22382.1,blat.proc3829881.chain_3262	2
scaffold_2	retained_intron	7774792	7775188	-	asmbl_23297	none	STRG.2074.1,Trinity_GG_18174_c0_g1_i3,Trinity_GG_18174_c0_g1_i5,blat.proc3829887.chain_1981,blat.proc3829887.chain_1983,blat.proc3829887.chain_1985	6	STRG.2074.2,STRG.2074.3,blat.proc3829887.chain_1982,blat.proc3829887.chain_1984	4
scaffold_12	skipped_exon	6426744	6429219	-	asmbl_7665,asmbl_7666,asmbl_7667,asmbl_7668	none	STRG.14731.1,STRG.14731.2,STRG.14731.3,blat.proc3829893.chain_3149,blat.proc3829893.chain_3150,blat.proc3829893.chain_3151	6	STRG.14731.4	1
scaffold_9	alt_acceptor	571263	571264	+	asmbl_53752	none	STRG.10779.2	1	STRG.10779.3	1
scaffold_2	alt_acceptor	7782117	7782118	+	asmbl_24609	none	STRG.2076.7,blat.proc3829871.chain_2202	2	STRG.2076.5,STRG.2076.6,blat.proc3829871.chain_2207	3
scaffold_24	starts_in_intron	5940319	5940319	+	asmbl_32266,asmbl_32274,asmbl_32275	none	Trinity_GG_14738_c0_g1_i12,blat.proc3829883.chain_3536,blat.proc3829883.chain_3539,blat.proc3829883.chain_3549	4	STRG.26645.1,blat.proc3829883.chain_3535,blat.proc3829883.chain_3537,blat.proc3829883.chain_3542,blat.proc3829883.chain_3543,blat.proc3829883.chain_3544,blat.proc3829883.chain_3545,blat.proc3829883.chain_3547,blat.proc3829883.chain_3548	9
scaffold_759	spliced_intron	1999	2114	+	asmbl_51607	none	STRG.30439.2	1	STRG.30439.1	1
scaffold_5	retained_intron	12909527	12909673	+	asmbl_44506	none	Trinity_GG_3534_c0_g1_i3,blat.proc3829873.chain_2625,blat.proc3829873.chain_2626	3	STRG.6514.1,blat.proc3829873.chain_2624	2
scaffold_14	spliced_intron	11139409	11139486	-	asmbl_13430	none	STRG.17433.1,blat.proc3829895.chain_2149	2	blat.proc3829895.chain_2148	1
scaffold_20	retained_intron	5845427	5845613	-	asmbl_26697	none	STRG.23171.2,Trinity_GG_29935_c0_g1_i3,blat.proc3829899.chain_195	3	STRG.23171.1,blat.proc3829899.chain_193	2
scaffold_14	alternate_exon	2380380	2380544	-	asmbl_12915,asmbl_12920	none	STRG.16839.4,STRG.16839.7	2	STRG.16839.3,STRG.16839.6	2
scaffold_18	spliced_intron	372033	372122	-	asmbl_19610,asmbl_19616,asmbl_19617	none	STRG.20979.1,blat.proc3829897.chain_1875,blat.proc3829897.chain_1876,blat.proc3829897.chain_1879	4	blat.proc3829897.chain_1878	1
scaffold_58	starts_in_intron	4970	4970	+	asmbl_46556	none	Trinity_GG_16643_c0_g1_i1,blat.proc3829885.chain_3125	2	STRG.30056.1	1
scaffold_1	spliced_intron	6299428	6299553	-	asmbl_353,asmbl_354	none	STRG.424.1,STRG.424.2,blat.proc3829887.chain_304,blat.proc3829887.chain_306,blat.proc3829887.chain_307	5	STRG.424.3,blat.proc3829887.chain_303	2
scaffold_1	starts_in_intron	11947746	11947746	+	asmbl_2157	none	Trinity_GG_492_c0_g1_i2,blat.proc3829871.chain_874	2	STRG.813.1,blat.proc3829871.chain_873	2
scaffold_9	alt_acceptor	7780594	7780595	+	asmbl_54131	none	blat.proc3829875.chain_3707	1	blat.proc3829875.chain_3706,blat.proc3829875.chain_3709,blat.proc3829875.chain_3713,blat.proc3829875.chain_3714	4
scaffold_25	alternate_exon	3172115	3172287	-	asmbl_34095	none	STRG.27236.1,Trinity_GG_32274_c0_g1_i1,blat.proc3829901.chain_562	3	STRG.27236.2,Trinity_GG_32274_c0_g1_i3,blat.proc3829901.chain_564	3
scaffold_21	spliced_intron	1654934	1655150	+	asmbl_28368,asmbl_28369,asmbl_28371	none	STRG.23807.1,Trinity_GG_13211_c0_g1_i2,Trinity_GG_13211_c0_g1_i6,Trinity_GG_13211_c0_g1_i7,blat.proc3829883.chain_988,blat.proc3829883.chain_990,blat.proc3829883.chain_992	7	Trinity_GG_13211_c0_g1_i3,blat.proc3829883.chain_989	2
scaffold_7	alt_acceptor	17737513	17737514	+	asmbl_51376	none	STRG.9609.2	1	STRG.9609.1,blat.proc3829875.chain_2072,blat.proc3829875.chain_2074	3
scaffold_10	alt_acceptor	14826327	14826328	+	asmbl_4940	none	STRG.13014.2,blat.proc3829877.chain_1558	2	STRG.13014.1,STRG.13014.3	2
scaffold_19	retained_exon	13195098	13195451	-	asmbl_21837	none	Trinity_GG_29598_c1_g1_i12,blat.proc3829897.chain_3371	2	blat.proc3829897.chain_3362,blat.proc3829897.chain_3368	2
scaffold_19	alternate_exon	3683357	3683525	+	asmbl_22137	none	STRG.22046.7	1	STRG.22046.1,STRG.22046.3,STRG.22046.4	3
scaffold_24	alt_donor	278080	278081	-	asmbl_32695	none	STRG.26305.1,Trinity_GG_31691_c0_g1_i3,blat.proc3829899.chain_3346	3	STRG.26305.2,Trinity_GG_31691_c0_g1_i2,blat.proc3829899.chain_3345	3
scaffold_13	alt_acceptor	534832	534833	-	asmbl_9325,asmbl_9326	none	STRG.15432.2,STRG.15432.3	2	STRG.15432.1,Trinity_GG_25674_c0_g1_i1,Trinity_GG_25674_c0_g1_i4,blat.proc3829895.chain_187,blat.proc3829895.chain_189	5
scaffold_23	alt_acceptor	10893559	10893560	-	asmbl_31879	none	STRG.26271.1,blat.proc3829899.chain_3304	2	STRG.26271.2,STRG.26271.3,blat.proc3829899.chain_3305	3
scaffold_4	starts_in_intron	8081751	8081751	+	asmbl_42872	none	blat.proc3829873.chain_1016	1	STRG.4622.1,STRG.4622.2,blat.proc3829873.chain_1017	3
scaffold_17	alt_acceptor	20537	20538	+	asmbl_17661	none	STRG.19879.1,blat.proc3829881.chain_733	2	STRG.19879.2	1
scaffold_5	alt_donor	5729862	5729863	+	asmbl_44023	none	STRG.5982.2	1	STRG.5982.1,blat.proc3829873.chain_2082,blat.proc3829873.chain_2083	3
scaffold_16	alternate_exon	7533860	7533900	+	asmbl_17145	none	STRG.19399.3,blat.proc3829881.chain_273	2	STRG.19399.1,STRG.19399.2,blat.proc3829881.chain_274	3
scaffold_1999	ends_in_intron	1383	1383	+	asmbl_22802	none	STRG.30664.2,blat.proc3829885.chain_3566	2	STRG.30664.1	1
scaffold_4	alt_donor	7090140	7090141	+	asmbl_42796	none	STRG.4545.3,blat.proc3829873.chain_943	2	STRG.4545.2,blat.proc3829873.chain_945	2
scaffold_21	starts_in_intron	7928459	7928459	+	asmbl_28788	none	STRG.24313.5	1	STRG.24313.3,blat.proc3829883.chain_1451	2
scaffold_26	starts_in_intron	4688831	4688831	-	asmbl_34861	none	blat.proc3829901.chain_1384	1	STRG.28179.1,STRG.28179.2,STRG.28179.3,blat.proc3829901.chain_1382,blat.proc3829901.chain_1383,blat.proc3829901.chain_1385	6
scaffold_2	alt_acceptor	5706732	5706733	-	asmbl_23180,asmbl_23184	none	STRG.1957.1,blat.proc3829887.chain_1851,blat.proc3829887.chain_1853	3	STRG.1957.2,blat.proc3829887.chain_1852	2
scaffold_12	alternate_exon	16315084	16315382	-	asmbl_8257	none	STRG.15369.1	1	blat.proc3829895.chain_112,blat.proc3829895.chain_113,blat.proc3829895.chain_114	3
scaffold_16	retained_intron	795167	795376	+	asmbl_16841	none	STRG.19045.2,blat.proc3829879.chain_3658	2	STRG.19045.1,blat.proc3829879.chain_3657	2
scaffold_2	ends_in_intron	16474498	16474498	-	asmbl_23711	none	blat.proc3829887.chain_2429	1	STRG.2584.1,blat.proc3829887.chain_2427,blat.proc3829887.chain_2430	3
scaffold_3	skipped_exon	13664353	13664809	-	asmbl_39230	none	STRG.3706.2	1	STRG.3706.1	1
scaffold_27	skipped_exon	6194706	6196958	+	asmbl_36337	none	STRG.28993.3	1	STRG.28993.1,STRG.28993.4,STRG.28993.5	3
scaffold_16	alternate_exon	7241238	7241633	-	asmbl_16354	none	STRG.19382.9	1	STRG.19382.1,STRG.19382.3,STRG.19382.7,STRG.19382.8	4
scaffold_1	ends_in_intron	5209907	5209907	+	asmbl_1703,asmbl_1711,asmbl_1712	none	STRG.323.3,blat.proc3829871.chain_393,blat.proc3829871.chain_394	3	STRG.323.1,STRG.323.2,blat.proc3829871.chain_390,blat.proc3829871.chain_391,blat.proc3829871.chain_392,blat.proc3829871.chain_395	6
scaffold_10	retained_intron	6870182	6870280	-	asmbl_3429	none	Trinity_GG_24004_c0_g1_i5	1	STRG.12505.1,blat.proc3829893.chain_990,blat.proc3829893.chain_991,blat.proc3829893.chain_994,blat.proc3829893.chain_996,blat.proc3829893.chain_997,blat.proc3829893.chain_998,blat.proc3829893.chain_999	8
scaffold_25	starts_in_intron	5430084	5430084	+	asmbl_33564	none	Trinity_GG_15118_c0_g1_i3,blat.proc3829885.chain_454	2	STRG.27435.1,blat.proc3829885.chain_453,blat.proc3829885.chain_455	3
scaffold_14	retained_intron	11573664	11574063	-	asmbl_13482	none	STRG.17490.2,Trinity_GG_26806_c0_g1_i8	2	STRG.17490.4	1
scaffold_13	retained_intron	87947	88104	+	asmbl_10426,asmbl_10427	none	STRG.15412.1,STRG.15412.4,Trinity_GG_8476_c0_g2_i1,blat.proc3829879.chain_82	4	STRG.15412.2,blat.proc3829879.chain_80	2
scaffold_1	spliced_intron	4927829	4928203	-	asmbl_232	none	STRG.305.1,Trinity_GG_17172_c0_g1_i1	2	Trinity_GG_17172_c0_g1_i2	1
scaffold_15	skipped_exon	15450190	15450391	+	asmbl_14740	none	Trinity_GG_10389_c0_g1_i4,blat.proc3829879.chain_3566	2	STRG.18933.1,STRG.18933.2,Trinity_GG_10389_c0_g1_i6,Trinity_GG_10389_c0_g1_i7,blat.proc3829879.chain_3563,blat.proc3829879.chain_3564,blat.proc3829879.chain_3565	7
scaffold_16	alt_acceptor	9032992	9032993	+	asmbl_17254	none	STRG.19501.1,blat.proc3829881.chain_387	2	STRG.19501.2,STRG.19501.4,blat.proc3829881.chain_388,blat.proc3829881.chain_389	4
scaffold_8	starts_in_intron	8795086	8795086	-	asmbl_52966	none	blat.proc3829891.chain_2254	1	STRG.10127.1,blat.proc3829891.chain_2255,blat.proc3829891.chain_2256	3
scaffold_25	spliced_intron	3737855	3737965	-	asmbl_34134	none	STRG.27308.1,blat.proc3829901.chain_615	2	blat.proc3829901.chain_616	1
scaffold_10	starts_in_intron	3984629	3984629	+	asmbl_4376	none	Trinity_GG_6754_c0_g1_i2	1	STRG.12234.1	1
scaffold_3	starts_in_intron	14843141	14843141	+	asmbl_40517	none	STRG.3834.2,Trinity_GG_2121_c2_g1_i1,blat.proc3829873.chain_189	3	STRG.3834.1,Trinity_GG_2121_c0_g1_i1,Trinity_GG_2121_c0_g1_i3,blat.proc3829873.chain_184,blat.proc3829873.chain_185	5
scaffold_13	spliced_intron	989090	989193	-	asmbl_9356	none	STRG.15463.1,blat.proc3829895.chain_200	2	blat.proc3829895.chain_201	1
scaffold_17	ends_in_intron	14080268	14080268	+	asmbl_18500	none	blat.proc3829881.chain_1726	1	STRG.20872.1,blat.proc3829881.chain_1728	2
scaffold_11	starts_in_intron	2496690	2496690	-	asmbl_6486	none	blat.proc3829893.chain_1899	1	STRG.13385.1,blat.proc3829893.chain_1898	2
scaffold_20	ends_in_intron	11479713	11479713	+	asmbl_26213	none	blat.proc3829883.chain_719	1	STRG.23639.4	1
scaffold_23	starts_in_intron	4100753	4100753	-	asmbl_31550	none	Trinity_GG_31457_c0_g1_i5,blat.proc3829899.chain_2936	2	STRG.25802.2,blat.proc3829899.chain_2934,blat.proc3829899.chain_2935	3
scaffold_26	alt_donor	6693191	6693192	-	asmbl_34968	none	STRG.28339.2,blat.proc3829901.chain_1516	2	STRG.28339.1,blat.proc3829901.chain_1517	2
scaffold_21	spliced_intron	3112080	3112167	-	asmbl_27533,asmbl_27534,asmbl_27535	none	STRG.23925.1,blat.proc3829899.chain_983,blat.proc3829899.chain_984,blat.proc3829899.chain_986	4	blat.proc3829899.chain_985	1
scaffold_8	starts_in_intron	10214862	10214862	+	asmbl_52146	none	Trinity_GG_5706_c0_g1_i2,blat.proc3829875.chain_2767	2	STRG.10266.1,blat.proc3829875.chain_2766	2
scaffold_10	alternate_exon	17006681	17006817	+	asmbl_5012,asmbl_5013	none	STRG.13136.3,STRG.13136.4	2	STRG.13136.1,STRG.13136.2,Trinity_GG_7232_c0_g1_i1,Trinity_GG_7232_c0_g1_i2,blat.proc3829877.chain_1665,blat.proc3829877.chain_1666	6
scaffold_4	ends_in_intron	16808476	16808476	-	asmbl_41970	none	Trinity_GG_19929_c0_g1_i1,blat.proc3829889.chain_1263	2	STRG.5268.1,blat.proc3829889.chain_1264,blat.proc3829889.chain_1266	3
scaffold_2	alt_acceptor	7782466	7782467	+	asmbl_24606,asmbl_24607,asmbl_24612	none	STRG.2076.5,STRG.2076.6,blat.proc3829871.chain_2207	3	STRG.2076.7,blat.proc3829871.chain_2202	2
scaffold_18	alternate_exon	205251	205340	+	asmbl_20301	none	Trinity_GG_11543_c0_g1_i1,blat.proc3829881.chain_1838	2	STRG.20965.1,blat.proc3829881.chain_1839,blat.proc3829881.chain_1841	3
scaffold_23	alternate_exon	7875828	7877367	-	asmbl_31767	none	STRG.26073.2,blat.proc3829899.chain_3179	2	STRG.26073.1,blat.proc3829899.chain_3181	2
scaffold_8	alt_donor	2662409	2662410	+	asmbl_51716	none	STRG.9797.1,Trinity_GG_5400_c0_g1_i2,blat.proc3829875.chain_2207	3	STRG.9797.2,Trinity_GG_5400_c0_g1_i1,blat.proc3829875.chain_2208	3
scaffold_6	spliced_intron	13710244	13710366	-	asmbl_48874,asmbl_48876	none	STRG.8114.1,STRG.8114.2,blat.proc3829891.chain_426	3	blat.proc3829891.chain_425	1
scaffold_2	alt_donor	2903629	2903630	-	asmbl_22970,asmbl_22971,asmbl_22972	none	STRG.1728.1,blat.proc3829887.chain_1508,blat.proc3829887.chain_1510,blat.proc3829887.chain_1512	4	STRG.1728.2,blat.proc3829887.chain_1509,blat.proc3829887.chain_1511	3
scaffold_6	alternate_exon	8932323	8933429	+	asmbl_47118	none	STRG.7765.1,blat.proc3829875.chain_42	2	STRG.7765.2,STRG.7765.3,blat.proc3829875.chain_41	3
scaffold_6	spliced_intron	13168142	13168655	-	asmbl_48824,asmbl_48827	none	STRG.8067.1,blat.proc3829891.chain_381,blat.proc3829891.chain_383	3	STRG.8067.2,Trinity_GG_21606_c0_g1_i2,blat.proc3829891.chain_380	3
scaffold_14	skipped_exon	14147955	14149322	+	asmbl_12509,asmbl_12514	none	STRG.17676.2,blat.proc3829879.chain_2283,blat.proc3829879.chain_2284	3	STRG.17676.1,STRG.17676.3,STRG.17676.5	3
scaffold_2	starts_in_intron	4580991	4580991	+	asmbl_24383	none	Trinity_GG_1044_c0_g1_i2,blat.proc3829871.chain_1909	2	STRG.1884.1,STRG.1884.2,STRG.1884.3,blat.proc3829871.chain_1910	4
scaffold_5	retained_intron	14261932	14262394	+	asmbl_44581,asmbl_44583	none	STRG.6629.3,Trinity_GG_3625_c0_g1_i7,blat.proc3829873.chain_2762,blat.proc3829873.chain_2766	4	blat.proc3829873.chain_2765	1
scaffold_6	ends_in_intron	8010260	8010260	-	asmbl_48462	none	STRG.7672.2	1	STRG.7672.1,blat.proc3829889.chain_3653,blat.proc3829889.chain_3654	3
scaffold_12	starts_in_intron	14043792	14043792	-	asmbl_8090	none	blat.proc3829893.chain_3660	1	STRG.15216.1,STRG.15216.2,STRG.15216.3,STRG.15216.4,STRG.15216.5,blat.proc3829893.chain_3658,blat.proc3829893.chain_3659,blat.proc3829893.chain_3661,blat.proc3829893.chain_3662	9
scaffold_7	starts_in_intron	12899995	12899995	-	asmbl_50087	none	blat.proc3829891.chain_1636	1	STRG.9392.1,blat.proc3829891.chain_1637	2
scaffold_28	alt_acceptor	4130689	4130690	+	asmbl_38207	none	STRG.29584.1,blat.proc3829885.chain_2716	2	STRG.29584.2,STRG.29584.3	2
scaffold_20	starts_in_intron	8449045	8449045	+	asmbl_25936	none	Trinity_GG_12888_c0_g1_i1,blat.proc3829883.chain_450	2	STRG.23379.1	1
scaffold_5	spliced_intron	15043048	15043289	-	asmbl_46015,asmbl_46019	none	STRG.6692.4,STRG.6692.5,blat.proc3829889.chain_2742	3	STRG.6692.6,STRG.6692.8,STRG.6692.9,blat.proc3829889.chain_2740	4
scaffold_17	retained_exon	2354832	2357750	+	asmbl_17765,asmbl_17771	none	STRG.20017.1,blat.proc3829881.chain_852,blat.proc3829881.chain_853	3	STRG.20017.7	1
scaffold_15	alt_acceptor	12392267	12392268	-	asmbl_15588	none	STRG.18686.4,blat.proc3829895.chain_3457	2	STRG.18686.2,STRG.18686.3,STRG.18686.5	3
scaffold_20	alt_acceptor	6983136	6983137	-	asmbl_26781	none	STRG.23247.1	1	STRG.23247.3	1
scaffold_7	skipped_exon	1438761	1440604	-	asmbl_49540	none	STRG.8631.2	1	STRG.8631.1,blat.proc3829891.chain_1002,blat.proc3829891.chain_1003	3
scaffold_27	spliced_intron	2998365	2998500	+	asmbl_36110,asmbl_36111,asmbl_36113,asmbl_36114,asmbl_36115,asmbl_36116,asmbl_36118,asmbl_36119,asmbl_36120,asmbl_36121,asmbl_36122	none	STRG.28767.1,STRG.28767.2,STRG.28767.3,STRG.28767.4,STRG.28767.5,blat.proc3829885.chain_1839,blat.proc3829885.chain_1840,blat.proc3829885.chain_1841,blat.proc3829885.chain_1842,blat.proc3829885.chain_1843,blat.proc3829885.chain_1844,blat.proc3829885.chain_1847,blat.proc3829885.chain_1848,blat.proc3829885.chain_1849	14	Trinity_GG_15918_c0_g1_i12,blat.proc3829885.chain_1845	2
scaffold_12	skipped_exon	1339354	1341285	+	asmbl_8432	none	STRG.14451.2,blat.proc3829877.chain_2925	2	blat.proc3829877.chain_2923,blat.proc3829877.chain_2924	2
scaffold_4	retained_intron	16315868	16316024	+	asmbl_43300	none	STRG.5205.2,blat.proc3829873.chain_1512	2	STRG.5205.4,Trinity_GG_2902_c0_g1_i6,blat.proc3829873.chain_1511,blat.proc3829873.chain_1514	4
scaffold_26	alt_acceptor	9330589	9330590	-	asmbl_35047	none	STRG.28471.1,blat.proc3829901.chain_1606	2	STRG.28471.2	1
scaffold_28	alt_acceptor	155674	155675	-	asmbl_37221	none	STRG.29224.1	1	STRG.29224.2	1
scaffold_14	starts_in_intron	12162824	12162824	+	asmbl_12402	none	blat.proc3829879.chain_2234	1	STRG.17534.1	1
scaffold_11	spliced_intron	8075675	8075767	-	asmbl_6800,asmbl_6801,asmbl_6802,asmbl_6803,asmbl_6804,asmbl_6805,asmbl_6806,asmbl_6812,asmbl_6815	none	STRG.13802.1,STRG.13802.2,Trinity_GG_24711_c0_g1_i17,Trinity_GG_24711_c0_g1_i18,Trinity_GG_24711_c0_g1_i2,Trinity_GG_24711_c0_g1_i3,Trinity_GG_24711_c0_g1_i5,Trinity_GG_24711_c0_g1_i8,blat.proc3829893.chain_2197,blat.proc3829893.chain_2200,blat.proc3829893.chain_2201,blat.proc3829893.chain_2204,blat.proc3829893.chain_2205,blat.proc3829893.chain_2206,blat.proc3829893.chain_2209,blat.proc3829893.chain_2211	16	blat.proc3829893.chain_2198	1
scaffold_14	spliced_intron	3161005	3161274	+	asmbl_11880,asmbl_11881,asmbl_11883,asmbl_11885,asmbl_11886,asmbl_11890,asmbl_11892,asmbl_11894,asmbl_11895,asmbl_11896,asmbl_11897,asmbl_11898	none	STRG.16893.1,STRG.16893.2,STRG.16893.3,blat.proc3829879.chain_1625,blat.proc3829879.chain_1626,blat.proc3829879.chain_1629,blat.proc3829879.chain_1631,blat.proc3829879.chain_1632,blat.proc3829879.chain_1633,blat.proc3829879.chain_1635,blat.proc3829879.chain_1636,blat.proc3829879.chain_1639	12	blat.proc3829879.chain_1640	1
scaffold_12	starts_in_intron	11691711	11691711	-	asmbl_7954	none	Trinity_GG_25402_c0_g1_i1	1	STRG.15080.1,blat.proc3829893.chain_3428	2
scaffold_16	alternate_exon	6147933	6148988	+	asmbl_17073	none	blat.proc3829881.chain_209	1	STRG.19342.2,STRG.19342.3,STRG.19342.4,blat.proc3829881.chain_210	4
scaffold_23	alternate_exon	2634717	2634920	+	asmbl_30715	none	Trinity_GG_14194_c0_g1_i4,blat.proc3829883.chain_2617	2	STRG.25710.3	1
scaffold_23	alt_donor	5305556	5305557	+	asmbl_30858,asmbl_30860	none	STRG.25889.1,blat.proc3829883.chain_2773,blat.proc3829883.chain_2776	3	STRG.25889.2,blat.proc3829883.chain_2775	2
scaffold_19	starts_in_intron	8747085	8747085	+	asmbl_22350	none	Trinity_GG_12329_c1_g1_i3,blat.proc3829881.chain_3237	2	STRG.22311.2	1
scaffold_1	starts_in_intron	14684352	14684352	-	asmbl_953	none	blat.proc3829887.chain_859	1	STRG.1060.1,blat.proc3829887.chain_858	2
scaffold_560	retained_intron	741	875	-	asmbl_46530	none	Trinity_GG_34031_c0_g1_i3,blat.proc3829901.chain_3408	2	STRG.30350.1,blat.proc3829901.chain_3407	2
scaffold_28	alt_acceptor	3293170	3293171	-	asmbl_37470	none	STRG.29524.2,blat.proc3829901.chain_2630	2	STRG.29524.1,STRG.29524.3,blat.proc3829901.chain_2629	3
scaffold_5	spliced_intron	6734217	6734431	+	asmbl_44110	none	STRG.6071.2,blat.proc3829873.chain_2242	2	STRG.6071.1,STRG.6071.3,blat.proc3829873.chain_2241	3
scaffold_16	ends_in_intron	11394982	11394982	-	asmbl_16519	none	Trinity_GG_28017_c3_g1_i1,blat.proc3829897.chain_610	2	STRG.19663.3,blat.proc3829897.chain_611	2
scaffold_25	starts_in_intron	5607355	5607355	-	asmbl_34247	none	Trinity_GG_32369_c0_g1_i2,blat.proc3829901.chain_706	2	STRG.27441.1,STRG.27441.2,Trinity_GG_32369_c0_g1_i1,blat.proc3829901.chain_705	4
scaffold_2	starts_in_intron	15270974	15270974	+	asmbl_25032,asmbl_25033,asmbl_25036	none	blat.proc3829871.chain_2524,blat.proc3829871.chain_2528,blat.proc3829871.chain_2535	3	STRG.2481.1,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2536,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	9
scaffold_1	retained_intron	12410452	12410980	+	asmbl_2196	none	Trinity_GG_524_c0_g1_i1,blat.proc3829871.chain_942	2	STRG.853.1,Trinity_GG_524_c0_g1_i2,blat.proc3829871.chain_943	3
scaffold_26	spliced_intron	5895307	5895541	-	asmbl_34913,asmbl_34918,asmbl_34919	none	STRG.28281.1,STRG.28281.3,blat.proc3829901.chain_1395,blat.proc3829901.chain_1397	4	STRG.28281.2,blat.proc3829901.chain_1396	2
scaffold_17	alternate_exon	2630320	2630364	+	asmbl_17801	none	Trinity_GG_10982_c0_g1_i2,blat.proc3829881.chain_878	2	STRG.20044.1,STRG.20044.2,STRG.20044.3,STRG.20044.4,Trinity_GG_10982_c0_g1_i4,blat.proc3829881.chain_875,blat.proc3829881.chain_876	7
scaffold_13	retained_exon	11599669	11599743	+	asmbl_11275,asmbl_11278,asmbl_11279	none	STRG.16295.2,blat.proc3829879.chain_1015,blat.proc3829879.chain_1020,blat.proc3829879.chain_1023	4	STRG.16295.1,STRG.16295.3,blat.proc3829879.chain_1014,blat.proc3829879.chain_1018,blat.proc3829879.chain_1019	5
scaffold_10	alternate_exon	211880	211935	-	asmbl_2840,asmbl_2843	none	STRG.11904.1,Trinity_GG_23629_c0_g1_i2,blat.proc3829893.chain_334	3	STRG.11904.2,blat.proc3829893.chain_335,blat.proc3829893.chain_336	3
scaffold_6	starts_in_intron	13655185	13655185	-	asmbl_48865	none	STRG.8100.2	1	STRG.8100.1,STRG.8100.3	2
scaffold_2	alternate_exon	6901551	6906418	+	asmbl_24542	none	STRG.2036.2	1	STRG.2036.4	1
scaffold_15	starts_in_intron	9685384	9685384	-	asmbl_15420	none	blat.proc3829895.chain_3145	1	STRG.18475.1,blat.proc3829895.chain_3147	2
scaffold_6	starts_in_intron	16291436	16291436	-	asmbl_49047	none	blat.proc3829891.chain_671	1	STRG.8349.1,blat.proc3829891.chain_666	2
scaffold_13	retained_intron	6950776	6951100	-	asmbl_9775	none	STRG.15968.1,Trinity_GG_25972_c0_g1_i5	2	STRG.15968.2,STRG.15968.3,STRG.15968.5,STRG.15968.6	4
scaffold_8	spliced_intron	15733421	15733539	+	asmbl_52408,asmbl_52409	none	STRG.10571.1,Trinity_GG_5832_c0_g1_i1,Trinity_GG_5832_c0_g1_i3,blat.proc3829875.chain_2994,blat.proc3829875.chain_2996	5	Trinity_GG_5832_c0_g1_i2,blat.proc3829875.chain_2995	2
scaffold_10	retained_exon	9554352	9554426	+	asmbl_4680,asmbl_4682	none	STRG.12692.1,STRG.12692.5	2	STRG.12692.2,STRG.12692.4,blat.proc3829877.chain_1283	3
scaffold_9	alt_donor	6842921	6842922	+	asmbl_54093	none	STRG.11184.1,blat.proc3829875.chain_3606	2	blat.proc3829875.chain_3607	1
scaffold_23	skipped_exon	5583740	5584101	+	asmbl_30885	none	STRG.25912.2	1	STRG.25912.4	1
scaffold_3	skipped_exon	6176437	6177777	-	asmbl_38856,asmbl_38859	none	blat.proc3829887.chain_2942,blat.proc3829887.chain_2945	2	blat.proc3829887.chain_2944	1
scaffold_9	spliced_intron	17469882	17470146	-	asmbl_55609	none	STRG.11832.3,blat.proc3829893.chain_238	2	STRG.11832.1,blat.proc3829893.chain_239	2
scaffold_23	starts_in_intron	1514641	1514641	-	asmbl_31374	none	blat.proc3829899.chain_2716	1	STRG.25610.1,blat.proc3829899.chain_2714,blat.proc3829899.chain_2715	3
scaffold_4	starts_in_intron	17030943	17030943	+	asmbl_43361	none	Trinity_GG_2913_c0_g1_i5,blat.proc3829873.chain_1533	2	STRG.5305.2,STRG.5305.3,blat.proc3829873.chain_1531,blat.proc3829873.chain_1532	4
scaffold_19	spliced_intron	12972869	12973050	-	asmbl_21785,asmbl_21786,asmbl_21789,asmbl_21791	none	STRG.22606.2,STRG.22606.5,Trinity_GG_29578_c0_g1_i1,Trinity_GG_29578_c0_g1_i6,Trinity_GG_29578_c0_g1_i7,blat.proc3829897.chain_3318,blat.proc3829897.chain_3322,blat.proc3829897.chain_3325	8	STRG.22606.3	1
scaffold_14	alt_donor	8452119	8452120	-	asmbl_13300	none	Trinity_GG_26716_c0_g1_i1	1	Trinity_GG_26716_c0_g1_i3	1
scaffold_17	skipped_exon	9972037	9974021	+	asmbl_18268	none	STRG.20603.3	1	STRG.20603.2,blat.proc3829881.chain_1444	2
scaffold_20	retained_exon	2403443	2403500	+	asmbl_25641	none	STRG.22962.2,blat.proc3829883.chain_93	2	STRG.22962.1,blat.proc3829883.chain_92	2
scaffold_23	skipped_exon	5078954	5081541	-	asmbl_31601	none	STRG.25871.2,blat.proc3829899.chain_2987	2	STRG.25871.1,blat.proc3829899.chain_2988	2
scaffold_5	spliced_intron	2234854	2234891	-	asmbl_45269	none	blat.proc3829889.chain_1846	1	STRG.5750.1,blat.proc3829889.chain_1845	2
scaffold_19	alternate_exon	7577445	7584123	+	asmbl_22276	none	STRG.22230.1,blat.proc3829881.chain_3171	2	blat.proc3829881.chain_3174	1
scaffold_26	retained_exon	9843300	9843402	+	asmbl_35804,asmbl_35809	none	STRG.28526.3,blat.proc3829885.chain_1560	2	STRG.28526.2,blat.proc3829885.chain_1563,blat.proc3829885.chain_1565	3
scaffold_19	retained_exon	12107556	12107576	-	asmbl_21668,asmbl_21674	none	STRG.22526.3,STRG.22526.4,blat.proc3829897.chain_3209	3	STRG.22526.1,blat.proc3829897.chain_3211	2
scaffold_2	retained_intron	3079174	3079230	+	asmbl_24294	none	Trinity_GG_996_c0_g1_i1,blat.proc3829871.chain_1823	2	STRG.1752.1	1
scaffold_7	alt_acceptor	7615035	7615036	-	asmbl_49765,asmbl_49766	none	STRG.9004.3,STRG.9004.4,Trinity_GG_22076_c0_g1_i1,blat.proc3829891.chain_1229	4	STRG.9004.1,STRG.9004.2,Trinity_GG_22076_c0_g1_i2,blat.proc3829891.chain_1230	4
scaffold_10	retained_intron	13471381	13471638	-	asmbl_3788,asmbl_3792	none	STRG.12931.1,Trinity_GG_24242_c0_g2_i3,blat.proc3829893.chain_1416,blat.proc3829893.chain_1417	4	STRG.12931.2,STRG.12931.3,STRG.12931.4,blat.proc3829893.chain_1418,blat.proc3829893.chain_1419	5
scaffold_8	starts_in_intron	9476202	9476202	-	asmbl_53040	none	Trinity_GG_22714_c0_g1_i7,blat.proc3829891.chain_2370	2	STRG.10199.1,Trinity_GG_22714_c0_g1_i6,blat.proc3829891.chain_2373,blat.proc3829891.chain_2374,blat.proc3829891.chain_2375	5
scaffold_3	alternate_exon	9844427	9844650	-	asmbl_39026	none	blat.proc3829887.chain_3241	1	STRG.3457.2,blat.proc3829887.chain_3242	2
scaffold_15	retained_intron	15501981	15502092	+	asmbl_14757	none	STRG.18940.2	1	STRG.18940.1,Trinity_GG_10382_c0_g1_i1,Trinity_GG_10382_c0_g1_i2,Trinity_GG_10382_c0_g1_i3,Trinity_GG_10382_c0_g1_i5,Trinity_GG_10382_c0_g1_i6,blat.proc3829879.chain_3532,blat.proc3829879.chain_3533,blat.proc3829879.chain_3534,blat.proc3829879.chain_3535,blat.proc3829879.chain_3536,blat.proc3829879.chain_3537	12
scaffold_6	retained_intron	17886425	17886597	+	asmbl_47737	none	STRG.8475.2,Trinity_GG_4642_c0_g1_i4,blat.proc3829875.chain_830	3	Trinity_GG_4642_c0_g1_i2,blat.proc3829875.chain_832	2
scaffold_11	ends_in_intron	17086153	17086153	-	asmbl_7230	none	STRG.14362.6	1	STRG.14362.1,STRG.14362.2,STRG.14362.4,STRG.14362.5,blat.proc3829893.chain_2767,blat.proc3829893.chain_2768,blat.proc3829893.chain_2771	7
scaffold_9	alt_acceptor	8028271	8028272	-	asmbl_55081,asmbl_55083	none	STRG.11218.1,blat.proc3829891.chain_3380	2	STRG.11218.2,blat.proc3829891.chain_3378,blat.proc3829891.chain_3379	3
scaffold_19	ends_in_intron	1665645	1665645	-	asmbl_21243	none	Trinity_GG_29235_c1_g1_i1,blat.proc3829897.chain_2683	2	STRG.21913.1,STRG.21913.2,blat.proc3829897.chain_2682	3
scaffold_13	alt_donor	6603994	6603995	+	asmbl_10932	none	Trinity_GG_8751_c0_g1_i4,blat.proc3829879.chain_613	2	STRG.15936.1,STRG.15936.2,STRG.15936.3,STRG.15936.4,Trinity_GG_8751_c0_g1_i2,Trinity_GG_8751_c0_g1_i3,blat.proc3829879.chain_614,blat.proc3829879.chain_615,blat.proc3829879.chain_616	9
scaffold_11	alternate_exon	17070591	17070714	-	asmbl_7219,asmbl_7222	none	STRG.14359.1,STRG.14359.3,blat.proc3829893.chain_2780	3	STRG.14359.2,blat.proc3829893.chain_2779	2
scaffold_6	alt_donor	10147743	10147744	-	asmbl_48599	none	blat.proc3829891.chain_77	1	STRG.7840.1,blat.proc3829891.chain_78	2
scaffold_25	starts_in_intron	2675338	2675338	+	asmbl_33398	none	blat.proc3829885.chain_224	1	STRG.27215.1,blat.proc3829885.chain_222	2
scaffold_19	alt_donor	6686578	6686579	+	asmbl_22233,asmbl_22235	none	STRG.22182.1,Trinity_GG_12219_c0_g1_i3,Trinity_GG_12219_c0_g1_i4,blat.proc3829881.chain_3046,blat.proc3829881.chain_3048	5	blat.proc3829881.chain_3047	1
scaffold_1	spliced_intron	1994334	1994743	+	asmbl_1520,asmbl_1521,asmbl_1522	none	STRG.126.1,STRG.126.2,Trinity_GG_103_c0_g1_i2,blat.proc3829871.chain_177,blat.proc3829871.chain_178	5	blat.proc3829871.chain_176	1
scaffold_28	alt_donor	4209683	4209684	+	asmbl_38220,asmbl_38221	none	STRG.29593.6,blat.proc3829885.chain_2726	2	STRG.29593.1,STRG.29593.4,STRG.29593.5,blat.proc3829885.chain_2724,blat.proc3829885.chain_2727	5
scaffold_12	alternate_exon	11210024	11210057	-	asmbl_7922	none	STRG.15049.1	1	STRG.15049.2	1
scaffold_8	retained_intron	8733303	8733398	+	asmbl_52010,asmbl_52011	none	STRG.10125.2,STRG.10125.4,Trinity_GG_5629_c1_g1_i1,Trinity_GG_5629_c2_g1_i4,blat.proc3829875.chain_2629,blat.proc3829875.chain_2630,blat.proc3829875.chain_2631	7	STRG.10125.3,STRG.10125.5	2
scaffold_5	starts_in_intron	13802192	13802192	-	asmbl_45942	none	blat.proc3829889.chain_2654	1	STRG.6592.1,STRG.6592.2,blat.proc3829889.chain_2652,blat.proc3829889.chain_2653,blat.proc3829889.chain_2655	5
scaffold_5	alt_acceptor	19029102	19029103	-	asmbl_46261,asmbl_46269	none	STRG.7018.5,blat.proc3829889.chain_3003	2	STRG.7018.1,STRG.7018.3,STRG.7018.4,blat.proc3829889.chain_3006,blat.proc3829889.chain_3008,blat.proc3829889.chain_3009	6
scaffold_28	spliced_intron	2199808	2199837	+	asmbl_38044	none	STRG.29369.3	1	STRG.29369.1,STRG.29369.2,blat.proc3829885.chain_2468,blat.proc3829885.chain_2469,blat.proc3829885.chain_2470	5
scaffold_22	alternate_exon	509596	509853	-	asmbl_29860	none	Trinity_GG_30818_c0_g1_i8,blat.proc3829899.chain_1825	2	STRG.24685.2,STRG.24685.3,STRG.24685.4,STRG.24685.5,Trinity_GG_30818_c0_g1_i1,Trinity_GG_30818_c0_g1_i13,Trinity_GG_30818_c0_g1_i17,Trinity_GG_30818_c0_g1_i19,blat.proc3829899.chain_1822,blat.proc3829899.chain_1823,blat.proc3829899.chain_1824,blat.proc3829899.chain_1827,blat.proc3829899.chain_1830,blat.proc3829899.chain_1831,blat.proc3829899.chain_1836	15
scaffold_20	starts_in_intron	10248682	10248682	-	asmbl_27023	none	blat.proc3829899.chain_559	1	STRG.23558.1,STRG.23558.2,blat.proc3829899.chain_556,blat.proc3829899.chain_557,blat.proc3829899.chain_558	5
scaffold_15	retained_exon	7793233	7793349	+	asmbl_14243	none	STRG.18344.2,blat.proc3829879.chain_2991,blat.proc3829879.chain_2992	3	STRG.18344.1,blat.proc3829879.chain_2989	2
scaffold_11	starts_in_intron	5654760	5654760	+	asmbl_5539	none	STRG.13619.2	1	STRG.13619.1,Trinity_GG_7502_c0_g1_i1,blat.proc3829877.chain_2118	3
scaffold_4	ends_in_intron	8989329	8989329	-	asmbl_41541	none	Trinity_GG_19623_c1_g1_i2,blat.proc3829889.chain_758	2	STRG.4717.1,STRG.4717.2,STRG.4717.3,STRG.4717.4,STRG.4717.5,blat.proc3829889.chain_759	6
scaffold_21	starts_in_intron	6489404	6489404	+	asmbl_28672	none	blat.proc3829883.chain_1312	1	STRG.24157.2,STRG.24157.3,blat.proc3829883.chain_1311	3
scaffold_21	starts_in_intron	10568207	10568207	-	asmbl_28089	none	blat.proc3829899.chain_1659	1	STRG.24516.2	1
scaffold_7	alt_donor	15266496	15266497	+	asmbl_51308,asmbl_51311,asmbl_51313,asmbl_51315	none	STRG.9532.2,STRG.9532.4,blat.proc3829875.chain_1981,blat.proc3829875.chain_1984,blat.proc3829875.chain_1986	5	STRG.9532.1,STRG.9532.3,STRG.9532.5,blat.proc3829875.chain_1985,blat.proc3829875.chain_1987	5
scaffold_16	alternate_exon	8715635	8717356	-	asmbl_16432	none	STRG.19484.1,Trinity_GG_27917_c0_g1_i1,blat.proc3829897.chain_466,blat.proc3829897.chain_508	4	STRG.19484.2,STRG.19484.3,blat.proc3829897.chain_509,blat.proc3829897.chain_511	4
scaffold_5	retained_intron	12842021	12842175	+	asmbl_44499,asmbl_44500	none	STRG.6508.2,STRG.6508.3	2	STRG.6508.1,Trinity_GG_3545_c0_g1_i3,blat.proc3829873.chain_2643,blat.proc3829873.chain_2644	4
scaffold_7	retained_intron	10536228	10536307	-	asmbl_49939	none	STRG.9218.2,blat.proc3829891.chain_1469	2	STRG.9218.1	1
scaffold_17	retained_exon	7047020	7047118	+	asmbl_18018	none	blat.proc3829881.chain_1119	1	STRG.20358.2,blat.proc3829881.chain_1120	2
scaffold_27	ends_in_intron	570828	570828	+	asmbl_35914	none	STRG.28558.1,Trinity_GG_15810_c1_g1_i1,blat.proc3829885.chain_1606	3	STRG.28558.2,blat.proc3829885.chain_1603,blat.proc3829885.chain_1604	3
scaffold_28	ends_in_intron	56264	56264	-	asmbl_37208	none	Trinity_GG_33360_c0_g1_i2,blat.proc3829901.chain_2319	2	STRG.29222.1,blat.proc3829901.chain_2317,blat.proc3829901.chain_2318	3
scaffold_5	retained_intron	10304680	10304767	-	asmbl_45727	none	blat.proc3829889.chain_2403,blat.proc3829889.chain_2404	2	STRG.6325.1,blat.proc3829889.chain_2405,blat.proc3829889.chain_2406,blat.proc3829889.chain_2407,blat.proc3829889.chain_2408	5
scaffold_14	ends_in_intron	7230477	7230477	+	asmbl_12115	none	blat.proc3829879.chain_1909	1	STRG.17140.1	1
scaffold_10	alt_acceptor	8903982	8903983	-	asmbl_3547	none	STRG.12625.5,blat.proc3829885.chain_3307,blat.proc3829893.chain_1075	3	STRG.12625.4,blat.proc3829893.chain_1069	2
scaffold_16	starts_in_intron	152656	152656	-	asmbl_16002,asmbl_16009	none	blat.proc3829897.chain_66,blat.proc3829897.chain_69	2	STRG.19000.1,Trinity_GG_27691_c0_g1_i4,Trinity_GG_27691_c0_g1_i8	3
scaffold_2	spliced_intron	15270410	15270515	+	asmbl_25035,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25043,asmbl_25044,asmbl_25045	none	STRG.2481.1,blat.proc3829871.chain_2526,blat.proc3829871.chain_2527,blat.proc3829871.chain_2531,blat.proc3829871.chain_2532,blat.proc3829871.chain_2534,blat.proc3829871.chain_2536,blat.proc3829871.chain_2537,blat.proc3829871.chain_2538	9	blat.proc3829871.chain_2529	1
scaffold_17	retained_intron	14040941	14041125	+	asmbl_18494	none	STRG.20863.1,blat.proc3829881.chain_1718	2	STRG.20863.2	1
scaffold_5	alternate_exon	10539585	10539696	-	asmbl_45750	none	Trinity_GG_20579_c0_g1_i7	1	STRG.6329.1,STRG.6329.3,STRG.6329.4,Trinity_GG_20579_c0_g1_i4,blat.proc3829889.chain_2425,blat.proc3829889.chain_2427,blat.proc3829889.chain_2428	7
scaffold_2	retained_intron	13894429	13894871	+	asmbl_24894	none	Trinity_GG_1291_c0_g1_i1,blat.proc3829871.chain_2403	2	STRG.2378.1,Trinity_GG_1291_c0_g1_i2,blat.proc3829871.chain_2404	3
scaffold_3	alternate_exon	12040918	12041000	-	asmbl_39156,asmbl_39157	none	STRG.3625.3,Trinity_GG_19000_c0_g1_i2,blat.proc3829887.chain_3399	3	STRG.3625.1,STRG.3625.2,blat.proc3829887.chain_3397,blat.proc3829887.chain_3398	4
scaffold_8	alternate_exon	12027248	12027452	+	asmbl_52295	none	STRG.10394.2,blat.proc3829875.chain_2931	2	Trinity_GG_5804_c0_g1_i2,blat.proc3829875.chain_2932	2
scaffold_52	starts_in_intron	620	620	-	asmbl_46485	none	Trinity_GG_33859_c0_g1_i3	1	STRG.30037.1,STRG.30037.2,STRG.30037.3,blat.proc3829901.chain_3148,blat.proc3829901.chain_3149	5
scaffold_510	retained_intron	3172	3387	-	asmbl_46464	none	blat.proc3829901.chain_3390,blat.proc3829901.chain_3391	2	STRG.30341.3	1
scaffold_17	retained_intron	9030443	9030964	-	asmbl_19187	none	Trinity_GG_28534_c0_g1_i3,blat.proc3829897.chain_1456	2	STRG.20520.1,STRG.20520.2,STRG.20520.5,STRG.20520.6,blat.proc3829897.chain_1455	5
scaffold_13	alt_donor	7109506	7109507	+	asmbl_10998	none	STRG.15994.3,Trinity_GG_8796_c0_g1_i10,blat.proc3829879.chain_729	3	STRG.15994.2	1
scaffold_28	skipped_exon	3389665	3390454	+	asmbl_38173,asmbl_38175	none	STRG.29537.1,STRG.29537.3	2	STRG.29537.2	1
scaffold_26	retained_intron	5040641	5040729	+	asmbl_35479,asmbl_35480,asmbl_35481	none	blat.proc3829885.chain_1158,blat.proc3829885.chain_1163,blat.proc3829885.chain_1169	3	STRG.28206.1,blat.proc3829883.chain_2343,blat.proc3829883.chain_2345,blat.proc3829885.chain_1156,blat.proc3829885.chain_1157,blat.proc3829885.chain_1159,blat.proc3829885.chain_1162,blat.proc3829885.chain_1164,blat.proc3829885.chain_1168	9
scaffold_15	spliced_intron	12525670	12525837	+	asmbl_14520	none	STRG.18695.1,blat.proc3829879.chain_3194	2	Trinity_GG_10203_c0_g1_i1,blat.proc3829879.chain_3196	2
scaffold_8	retained_intron	15734313	15734436	+	asmbl_52409	none	Trinity_GG_5832_c0_g1_i1,blat.proc3829875.chain_2994	2	STRG.10571.1,Trinity_GG_5832_c0_g1_i2,Trinity_GG_5832_c0_g1_i3,blat.proc3829875.chain_2995,blat.proc3829875.chain_2996	5
scaffold_3	starts_in_intron	3247884	3247884	+	asmbl_39907	none	blat.proc3829871.chain_3302	1	STRG.3087.1,STRG.3087.4,STRG.3087.5,Trinity_GG_1771_c0_g1_i6,blat.proc3829871.chain_3299,blat.proc3829871.chain_3305,blat.proc3829871.chain_3308	7
scaffold_1	alt_donor	6127233	6127234	-	asmbl_325	none	blat.proc3829887.chain_298	1	STRG.412.1,STRG.412.2,blat.proc3829887.chain_295	3
scaffold_26	alt_donor	6351155	6351156	-	asmbl_34954	none	STRG.28315.5,blat.proc3829901.chain_1406	2	STRG.28315.2,STRG.28315.3,blat.proc3829901.chain_1403,blat.proc3829901.chain_1404	4
scaffold_7	skipped_exon	12082936	12083422	+	asmbl_51100	none	STRG.9310.3	1	STRG.9310.2	1
scaffold_10	alternate_exon	11108752	11108940	+	asmbl_4729	none	blat.proc3829877.chain_1338	1	STRG.12772.1,blat.proc3829877.chain_1339	2
scaffold_9	alt_acceptor	6847006	6847007	-	asmbl_55038	none	STRG.11185.1,blat.proc3829891.chain_3260	2	STRG.11185.2,STRG.11185.4,blat.proc3829891.chain_3258,blat.proc3829891.chain_3259	4
scaffold_2	alternate_exon	3898063	3898324	+	asmbl_24337,asmbl_24341	none	STRG.1831.1,blat.proc3829871.chain_1839,blat.proc3829871.chain_1841	3	STRG.1831.3,blat.proc3829871.chain_1840,blat.proc3829871.chain_1843	3
scaffold_28	ends_in_intron	2723109	2723109	+	asmbl_38104	none	blat.proc3829885.chain_2564	1	STRG.29438.1,STRG.29438.2,STRG.29438.3,blat.proc3829885.chain_2562,blat.proc3829885.chain_2563,blat.proc3829885.chain_2565	6
scaffold_5	ends_in_intron	5047570	5047570	+	asmbl_43993,asmbl_43995	none	blat.proc3829873.chain_2109	1	STRG.5951.2,blat.proc3829873.chain_2108	2
scaffold_7	starts_in_intron	9299815	9299815	-	asmbl_49857	none	blat.proc3829891.chain_1380	1	STRG.9130.1,blat.proc3829891.chain_1381	2
scaffold_2	alternate_exon	17465286	17465335	+	asmbl_25205	none	blat.proc3829871.chain_2850	1	STRG.2629.1,blat.proc3829871.chain_2849	2
scaffold_12	starts_in_intron	11359739	11359739	-	asmbl_7937	none	blat.proc3829893.chain_3475	1	STRG.15063.1,blat.proc3829893.chain_3477	2
scaffold_7	starts_in_intron	125439	125439	-	asmbl_49480	none	STRG.8585.2	1	STRG.8585.1,STRG.8585.4,STRG.8585.8,blat.proc3829891.chain_992,blat.proc3829891.chain_998	5
scaffold_4	retained_intron	4416472	4417089	+	asmbl_42574,asmbl_42575,asmbl_42583,asmbl_42584,asmbl_42586,asmbl_42587,asmbl_42590	none	Trinity_GG_2404_c0_g1_i10,Trinity_GG_2404_c0_g1_i19,blat.proc3829873.chain_681,blat.proc3829873.chain_685,blat.proc3829873.chain_686,blat.proc3829873.chain_687,blat.proc3829873.chain_689,blat.proc3829873.chain_690,blat.proc3829873.chain_698	9	STRG.4344.1,STRG.4344.2,STRG.4344.3,Trinity_GG_2404_c0_g1_i8,blat.proc3829873.chain_682,blat.proc3829873.chain_683,blat.proc3829873.chain_688,blat.proc3829873.chain_691,blat.proc3829873.chain_695	9
scaffold_5	alt_acceptor	1064211	1064212	-	asmbl_45207	none	STRG.5651.2,blat.proc3829889.chain_1794	2	STRG.5651.1,blat.proc3829889.chain_1793	2
scaffold_16	spliced_intron	14513223	14513295	-	asmbl_16628,asmbl_16629	none	STRG.19819.1,blat.proc3829897.chain_770,blat.proc3829897.chain_771	3	blat.proc3829897.chain_774	1
scaffold_25	retained_intron	1440431	1440581	+	asmbl_33366,asmbl_33367,asmbl_33371	none	STRG.27161.3,STRG.27161.4,Trinity_GG_14981_c0_g1_i1,blat.proc3829885.chain_226,blat.proc3829885.chain_227	5	STRG.27161.2,blat.proc3829885.chain_228	2
scaffold_1	alt_donor	3165320	3165321	+	asmbl_1566,asmbl_1567	none	STRG.194.1,STRG.194.2,Trinity_GG_88_c0_g1_i2,Trinity_GG_88_c0_g1_i3,blat.proc3829871.chain_152,blat.proc3829871.chain_153	6	STRG.194.3	1
scaffold_3	alternate_exon	7642145	7642179	-	asmbl_38926	none	STRG.3352.2	1	STRG.3352.1,blat.proc3829887.chain_3158	2
scaffold_7	alt_acceptor	12840579	12840580	-	asmbl_50085	none	STRG.9389.4,blat.proc3829891.chain_1501	2	STRG.9389.2,STRG.9389.3,Trinity_GG_22234_c0_g1_i1,blat.proc3829891.chain_1502,blat.proc3829891.chain_1503	5
scaffold_6	alt_donor	11514214	11514215	+	asmbl_47280	none	STRG.7939.1,Trinity_GG_4347_c0_g1_i1,blat.proc3829875.chain_317	3	STRG.7939.2,Trinity_GG_4347_c0_g1_i2,blat.proc3829875.chain_318	3
scaffold_11	starts_in_intron	8096972	8096972	+	asmbl_5688	none	STRG.13810.3,Trinity_GG_7614_c0_g1_i6,blat.proc3829877.chain_2295	3	STRG.13810.1,STRG.13810.2,Trinity_GG_7614_c0_g1_i1,Trinity_GG_7614_c0_g1_i3,blat.proc3829877.chain_2294,blat.proc3829877.chain_2296	6
scaffold_6	starts_in_intron	16887892	16887892	-	asmbl_49111	none	blat.proc3829891.chain_741	1	STRG.8402.1,STRG.8402.2,Trinity_GG_21814_c0_g1_i2,Trinity_GG_21814_c0_g1_i3,Trinity_GG_21814_c0_g1_i5,blat.proc3829891.chain_737,blat.proc3829891.chain_738,blat.proc3829891.chain_740	8
scaffold_20	spliced_intron	12074998	12075218	-	asmbl_27140,asmbl_27142	none	STRG.23691.1,blat.proc3829899.chain_688,blat.proc3829899.chain_690	3	blat.proc3829899.chain_692	1
scaffold_13	spliced_intron	5106775	5107098	-	asmbl_9633	none	STRG.15798.1,blat.proc3829895.chain_545	2	STRG.15798.2,blat.proc3829895.chain_544	2
scaffold_5	starts_in_intron	10856492	10856492	-	asmbl_45764	none	blat.proc3829889.chain_2340	1	STRG.6351.1,blat.proc3829889.chain_2341	2
scaffold_9	retained_intron	2400442	2400475	-	asmbl_54835	none	blat.proc3829891.chain_3016	1	STRG.10875.1	1
scaffold_28	alt_acceptor	7255243	7255244	+	asmbl_38350,asmbl_38354	none	STRG.29771.2,STRG.29771.4,Trinity_GG_16499_c0_g1_i1,blat.proc3829885.chain_2878	4	STRG.29771.1,STRG.29771.3,Trinity_GG_16499_c0_g1_i3,blat.proc3829885.chain_2880	4
scaffold_7	alternate_exon	8162448	8173017	+	asmbl_50845	none	STRG.9039.2,blat.proc3829875.chain_1471	2	STRG.9039.3,Trinity_GG_5002_c0_g2_i2,blat.proc3829875.chain_1469	3
scaffold_11	alt_donor	2843706	2843707	+	asmbl_5345	none	STRG.13415.3	1	STRG.13415.1,STRG.13415.2,Trinity_GG_7336_c0_g1_i1,Trinity_GG_7336_c0_g1_i2,blat.proc3829877.chain_1839,blat.proc3829877.chain_1840	6
scaffold_12	skipped_exon	12451859	12451997	+	asmbl_8969	none	STRG.15137.2	1	STRG.15137.4	1
scaffold_9	skipped_exon	8938979	8939567	-	asmbl_55112,asmbl_55115	none	STRG.11268.2,blat.proc3829891.chain_3363	2	STRG.11268.1,blat.proc3829891.chain_3360,blat.proc3829891.chain_3364	3
scaffold_19	spliced_intron	2649578	2649708	+	asmbl_22065	none	STRG.21940.1,blat.proc3829881.chain_2919	2	blat.proc3829881.chain_2917	1
scaffold_10	starts_in_intron	8778692	8778692	+	asmbl_4611	none	Trinity_GG_6957_c0_g1_i2,blat.proc3829877.chain_1184	2	STRG.12621.1,blat.proc3829877.chain_1186	2
scaffold_23	ends_in_intron	4449556	4449556	-	asmbl_31590	none	Trinity_GG_31473_c0_g1_i5,blat.proc3829899.chain_2967	2	STRG.25842.1,STRG.25842.2,STRG.25842.3,STRG.25842.4,Trinity_GG_31473_c0_g1_i1,Trinity_GG_31473_c0_g1_i2,Trinity_GG_31473_c0_g1_i4,Trinity_GG_31473_c0_g1_i6,blat.proc3829899.chain_2968,blat.proc3829899.chain_2969,blat.proc3829899.chain_2970,blat.proc3829899.chain_2971	12
scaffold_5	alternate_exon	8135816	8136318	+	asmbl_44197	none	STRG.6171.3,blat.proc3829873.chain_2333	2	STRG.6171.1,STRG.6171.2,blat.proc3829873.chain_2332,blat.proc3829873.chain_2334	4
scaffold_11	alt_donor	3796435	3796436	-	asmbl_6560	none	STRG.13491.2,blat.proc3829893.chain_1953	2	STRG.13491.1,blat.proc3829893.chain_1952	2
scaffold_17	skipped_exon	11035300	11036021	-	asmbl_19312	none	STRG.20653.1	1	STRG.20653.4	1
scaffold_7	spliced_intron	12437710	12437791	+	asmbl_51143,asmbl_51144	none	STRG.9337.1,STRG.9337.2,blat.proc3829875.chain_1797	3	blat.proc3829875.chain_1796	1
scaffold_2	retained_exon	2297728	2297862	-	asmbl_22911	none	blat.proc3829887.chain_1489	1	STRG.1667.3,blat.proc3829887.chain_1487	2
scaffold_15	retained_intron	15158080	15158445	+	asmbl_14665,asmbl_14666	none	Trinity_GG_10325_c0_g1_i7,Trinity_GG_10325_c0_g1_i8,blat.proc3829879.chain_3400,blat.proc3829879.chain_3401	4	blat.proc3829879.chain_3399,blat.proc3829879.chain_3402	2
scaffold_13	ends_in_intron	5131378	5131378	+	asmbl_10808	none	blat.proc3829879.chain_498	1	STRG.15801.1,STRG.15801.2,STRG.15801.3,blat.proc3829879.chain_497,blat.proc3829879.chain_499	5
scaffold_5	alt_donor	12237905	12237906	+	asmbl_44456	none	STRG.6452.3,blat.proc3829873.chain_2561	2	STRG.6452.1,blat.proc3829873.chain_2560	2
scaffold_6	retained_intron	13964868	13965021	+	asmbl_47492	none	blat.proc3829875.chain_578	1	STRG.8144.1,STRG.8144.2,blat.proc3829875.chain_577	3
scaffold_20	starts_in_intron	11545753	11545753	-	asmbl_27081	none	blat.proc3829899.chain_642	1	STRG.23646.1,blat.proc3829899.chain_644	2
scaffold_27	ends_in_intron	3623477	3623477	+	asmbl_36179	none	blat.proc3829885.chain_1908	1	STRG.28811.1,Trinity_GG_15953_c0_g1_i2,blat.proc3829885.chain_1904	3
scaffold_13	retained_exon	14563424	14563480	-	asmbl_10165	none	STRG.16497.4	1	STRG.16497.3	1
scaffold_5	retained_intron	5608890	5608962	+	asmbl_44017	none	STRG.5977.3,blat.proc3829873.chain_2065	2	STRG.5977.2,blat.proc3829873.chain_2067	2
scaffold_23	retained_exon	1850702	1850809	+	asmbl_30665	none	STRG.25646.2,blat.proc3829883.chain_2557	2	STRG.25646.1	1
scaffold_1	spliced_intron	6496620	6496782	-	asmbl_374	none	blat.proc3829887.chain_247	1	STRG.443.1,blat.proc3829887.chain_246	2
scaffold_11	alternate_exon	11316980	11317158	+	asmbl_5931	none	STRG.14067.2,blat.proc3829877.chain_2555	2	STRG.14067.1,blat.proc3829877.chain_2556	2
scaffold_11	retained_intron	3300926	3300997	-	asmbl_6526	none	blat.proc3829893.chain_1901	1	STRG.13450.1,blat.proc3829893.chain_1902	2
scaffold_24	retained_exon	9082287	9082385	+	asmbl_32499,asmbl_32502,asmbl_32503	none	STRG.26929.2,Trinity_GG_14897_c0_g1_i2,blat.proc3829885.chain_72,blat.proc3829885.chain_74	4	STRG.26929.1,STRG.26929.3,Trinity_GG_14897_c0_g1_i8,Trinity_GG_14897_c0_g1_i9,blat.proc3829885.chain_71,blat.proc3829885.chain_73,blat.proc3829885.chain_76	7
scaffold_7	ends_in_intron	12455633	12455633	-	asmbl_50048	none	Trinity_GG_22282_c0_g2_i1,blat.proc3829891.chain_1603	2	STRG.9342.1,STRG.9342.2,STRG.9342.4,STRG.9342.5,blat.proc3829891.chain_1602	5
scaffold_13	alt_donor	12243818	12243819	-	asmbl_10091	none	STRG.16344.1,blat.proc3829895.chain_1097	2	STRG.16344.2,STRG.16344.3,blat.proc3829895.chain_1094,blat.proc3829895.chain_1095	4
scaffold_9	retained_exon	9706783	9707334	+	asmbl_54216	none	STRG.11336.1,blat.proc3829877.chain_110	2	STRG.11336.2,blat.proc3829877.chain_109	2
scaffold_15	spliced_intron	15409791	15410185	+	asmbl_14721	none	STRG.18921.1	1	blat.proc3829879.chain_3516	1
scaffold_4	alt_acceptor	3383995	3383996	+	asmbl_42515	none	STRG.4269.1,blat.proc3829873.chain_586	2	STRG.4269.2,STRG.4269.3,blat.proc3829873.chain_584,blat.proc3829873.chain_585,blat.proc3829873.chain_587	5
scaffold_1	starts_in_intron	20711494	20711494	-	asmbl_1190	none	blat.proc3829887.chain_1239	1	STRG.1414.1,blat.proc3829887.chain_1238	2
scaffold_2	retained_intron	892931	893048	+	asmbl_24155,asmbl_24156,asmbl_24158,asmbl_24161	none	STRG.1565.1,STRG.1565.2,STRG.1565.4,blat.proc3829871.chain_1631,blat.proc3829871.chain_1632,blat.proc3829871.chain_1635,blat.proc3829871.chain_1636	7	STRG.1565.3,blat.proc3829871.chain_1634	2
scaffold_8	alt_acceptor	4961112	4961113	-	asmbl_52809,asmbl_52813	none	STRG.9963.1,blat.proc3829891.chain_2103,blat.proc3829891.chain_2104,blat.proc3829891.chain_2107	4	blat.proc3829891.chain_2102,blat.proc3829891.chain_2105	2
scaffold_3	retained_exon	6042295	6043728	-	asmbl_38836	none	STRG.3255.5	1	STRG.3255.1	1
scaffold_6	ends_in_intron	2527725	2527725	-	asmbl_48090	none	Trinity_GG_21056_c0_g1_i3,blat.proc3829889.chain_3226	2	Trinity_GG_21056_c0_g1_i1,blat.proc3829889.chain_3227	2
scaffold_8	alt_acceptor	18575180	18575181	-	asmbl_53570	none	STRG.10747.3	1	STRG.10747.1,STRG.10747.2,Trinity_GG_22963_c0_g1_i1,Trinity_GG_22963_c0_g1_i4,blat.proc3829891.chain_2879,blat.proc3829891.chain_2880,blat.proc3829891.chain_2881	7
scaffold_19	alt_acceptor	12956159	12956160	-	asmbl_21778	none	Trinity_GG_29572_c0_g1_i2,blat.proc3829897.chain_3293	2	STRG.22600.1,Trinity_GG_29572_c0_g1_i4,Trinity_GG_29572_c0_g1_i6,Trinity_GG_29572_c0_g1_i7,blat.proc3829897.chain_3292,blat.proc3829897.chain_3294,blat.proc3829897.chain_3295	7
scaffold_12	starts_in_intron	16439770	16439770	+	asmbl_9151	none	STRG.15389.3	1	STRG.15389.1,STRG.15389.2,blat.proc3829879.chain_58	3
scaffold_22	alternate_exon	10678069	10682061	-	asmbl_30386	none	STRG.25391.2,blat.proc3829899.chain_2463	2	STRG.25391.3	1
scaffold_16	alternate_exon	11319176	11319253	+	asmbl_17380	none	STRG.19651.2	1	STRG.19651.1,blat.proc3829881.chain_498	2
scaffold_6	spliced_intron	8580963	8581085	+	asmbl_47086,asmbl_47088	none	STRG.7732.2,STRG.7732.3	2	STRG.7732.1,blat.proc3829875.chain_111,blat.proc3829875.chain_112	3
scaffold_7	ends_in_intron	17914927	17914927	-	asmbl_50261	none	Trinity_GG_22415_c2_g1_i1,blat.proc3829891.chain_1842	2	STRG.9621.1,blat.proc3829891.chain_1840	2
scaffold_13	spliced_intron	1532474	1532709	+	asmbl_10535	none	STRG.15501.1,Trinity_GG_8539_c0_g1_i2,blat.proc3829879.chain_232	3	Trinity_GG_8539_c0_g1_i1,blat.proc3829879.chain_233	2
scaffold_3	ends_in_intron	3719373	3719373	+	asmbl_39921	none	blat.proc3829871.chain_3252	1	STRG.3091.1,blat.proc3829871.chain_3253	2
scaffold_5	spliced_intron	14261743	14261868	+	asmbl_44582,asmbl_44583,asmbl_44590	none	STRG.6629.3,blat.proc3829873.chain_2762,blat.proc3829873.chain_2765,blat.proc3829873.chain_2769	4	Trinity_GG_3625_c0_g1_i7,blat.proc3829873.chain_2766	2
scaffold_6	spliced_intron	14379745	14379856	+	asmbl_47539	none	STRG.8188.2,blat.proc3829875.chain_603	2	STRG.8188.1,Trinity_GG_4500_c0_g1_i2,blat.proc3829875.chain_602	3
scaffold_24	starts_in_intron	9091899	9091899	+	asmbl_32509	none	blat.proc3829885.chain_83	1	STRG.26930.1,STRG.26930.2,STRG.26930.3,STRG.26930.4,blat.proc3829885.chain_82,blat.proc3829885.chain_84	6
scaffold_15	alternate_exon	12391554	12397273	-	asmbl_15591	none	STRG.18686.3	1	STRG.18686.1,blat.proc3829895.chain_3453	2
scaffold_1	alt_acceptor	13924105	13924106	-	asmbl_865,asmbl_867	none	STRG.997.1,STRG.997.3,blat.proc3829887.chain_871	3	STRG.997.2	1
scaffold_14	starts_in_intron	6939092	6939092	+	asmbl_12100	none	blat.proc3829879.chain_1864	1	STRG.17121.1,blat.proc3829879.chain_1865,blat.proc3829879.chain_1866,blat.proc3829879.chain_1867	4
scaffold_1	skipped_exon	13098218	13100568	-	asmbl_798	none	STRG.941.2,blat.proc3829887.chain_823	2	blat.proc3829887.chain_824	1
scaffold_17	retained_intron	1592933	1593714	+	asmbl_17743	none	STRG.19981.1,Trinity_GG_10947_c0_g1_i1,blat.proc3829881.chain_811	3	Trinity_GG_10947_c0_g1_i2,blat.proc3829881.chain_812	2
scaffold_1	skipped_exon	14964792	14965935	+	asmbl_2396	none	STRG.1069.2	1	STRG.1069.1,blat.proc3829871.chain_1099	2
scaffold_16	spliced_intron	8042887	8043037	+	asmbl_17168,asmbl_17172	none	STRG.19437.2,blat.proc3829881.chain_281,blat.proc3829881.chain_282	3	STRG.19437.1,Trinity_GG_10630_c0_g1_i2,Trinity_GG_10630_c0_g1_i4,Trinity_GG_10630_c0_g1_i5,blat.proc3829881.chain_279,blat.proc3829881.chain_280,blat.proc3829881.chain_283	7
scaffold_16	retained_intron	430142	430213	-	asmbl_16041,asmbl_16047,asmbl_16048,asmbl_16049	none	blat.proc3829897.chain_16,blat.proc3829897.chain_20,blat.proc3829897.chain_21,blat.proc3829897.chain_22	4	STRG.19039.1,blat.proc3829897.chain_17,blat.proc3829897.chain_18,blat.proc3829897.chain_19,blat.proc3829897.chain_23,blat.proc3829897.chain_24,blat.proc3829897.chain_25,blat.proc3829897.chain_26,blat.proc3829897.chain_27	9
scaffold_18	retained_intron	1895347	1897477	-	asmbl_19689,asmbl_19693,asmbl_19701	none	STRG.21072.2,STRG.21072.3,STRG.21072.8	3	STRG.21072.4,STRG.21072.6	2
scaffold_6	alternate_exon	5194046	5194370	+	asmbl_46871	none	blat.proc3829873.chain_3588	1	STRG.7489.2,STRG.7489.3,STRG.7489.4,Trinity_GG_4091_c0_g1_i10,blat.proc3829873.chain_3581,blat.proc3829873.chain_3583,blat.proc3829873.chain_3585,blat.proc3829873.chain_3587	8
scaffold_5	retained_intron	14263100	14263469	+	asmbl_44582,asmbl_44589	none	blat.proc3829873.chain_2765,blat.proc3829873.chain_2770	2	STRG.6629.1,STRG.6629.3,blat.proc3829873.chain_2764,blat.proc3829873.chain_2769,blat.proc3829873.chain_2771	5
scaffold_21	spliced_intron	6617873	6617964	+	asmbl_28691,asmbl_28693,asmbl_28694	none	STRG.24174.1,blat.proc3829883.chain_1357,blat.proc3829883.chain_1358,blat.proc3829883.chain_1359	4	blat.proc3829883.chain_1356	1
scaffold_19	alternate_exon	12317592	12317789	+	asmbl_22585	none	blat.proc3829881.chain_3510	1	STRG.22553.2,blat.proc3829881.chain_3508	2
scaffold_4	alt_donor	18998183	18998184	+	asmbl_43464	none	STRG.5477.2,Trinity_GG_3026_c0_g1_i2,blat.proc3829873.chain_1725	3	STRG.5477.1,Trinity_GG_3026_c0_g1_i1,blat.proc3829873.chain_1726	3
scaffold_1	starts_in_intron	11179894	11179894	+	asmbl_2068	none	Trinity_GG_468_c0_g1_i4,blat.proc3829871.chain_813	2	STRG.743.1,STRG.743.2,STRG.743.3,STRG.743.4,STRG.743.5,blat.proc3829871.chain_815,blat.proc3829871.chain_819,blat.proc3829871.chain_821,blat.proc3829871.chain_822,blat.proc3829871.chain_823,blat.proc3829871.chain_824,blat.proc3829871.chain_825	12
scaffold_4	alt_donor	18758302	18758303	-	asmbl_42138	none	STRG.5464.3	1	STRG.5464.1	1
scaffold_6	alt_acceptor	7849694	7849695	+	asmbl_47022	none	STRG.7662.2	1	STRG.7662.1	1
scaffold_2	spliced_intron	7876359	7876445	+	asmbl_24618,asmbl_24622,asmbl_24623,asmbl_24624	none	STRG.2087.1,Trinity_GG_1183_c0_g1_i10,Trinity_GG_1183_c0_g1_i14,Trinity_GG_1183_c0_g1_i16,Trinity_GG_1183_c0_g1_i2,blat.proc3829871.chain_2180,blat.proc3829871.chain_2181,blat.proc3829871.chain_2182,blat.proc3829871.chain_2185	9	Trinity_GG_1183_c0_g1_i18,blat.proc3829871.chain_2179	2
scaffold_1	retained_exon	4226021	4226071	+	asmbl_1636	none	STRG.249.1,blat.proc3829871.chain_306	2	STRG.249.2,blat.proc3829871.chain_308	2
scaffold_27	alt_acceptor	571601	571602	+	asmbl_35917	none	blat.proc3829885.chain_1603	1	STRG.28558.2,blat.proc3829885.chain_1604	2
scaffold_7	starts_in_intron	9666066	9666066	+	asmbl_50970	none	Trinity_GG_5086_c0_g1_i2,blat.proc3829875.chain_1619	2	STRG.9142.1,blat.proc3829875.chain_1620	2
scaffold_19	alt_donor	5346626	5346627	-	asmbl_21358	none	STRG.22090.2,blat.proc3829897.chain_2876	2	STRG.22090.3,blat.proc3829897.chain_2877	2
scaffold_17	alternate_exon	8621168	8621310	+	asmbl_18133	none	STRG.20462.5,blat.proc3829881.chain_1271	2	STRG.20462.4,blat.proc3829881.chain_1266,blat.proc3829881.chain_1269	3
scaffold_9	retained_intron	9707335	9707760	+	asmbl_54211,asmbl_54221	none	STRG.11336.3,Trinity_GG_6324_c1_g1_i12,blat.proc3829877.chain_113,blat.proc3829877.chain_114	4	STRG.11336.1,blat.proc3829877.chain_110	2
scaffold_4	retained_intron	4117926	4118044	-	asmbl_41232	none	Trinity_GG_19381_c0_g1_i2,blat.proc3829889.chain_361	2	blat.proc3829889.chain_362	1
scaffold_2	alt_acceptor	7993796	7993797	-	asmbl_23322	none	STRG.2091.1	1	STRG.2091.2	1
scaffold_8	alternate_exon	15211595	15214228	+	asmbl_52384	none	STRG.10546.2	1	STRG.10546.1	1
scaffold_18	skipped_exon	8875038	8876200	-	asmbl_20071	none	STRG.21540.1,blat.proc3829897.chain_2288	2	STRG.21540.2,blat.proc3829897.chain_2287	2
scaffold_5	alt_acceptor	16206376	16206377	+	asmbl_44720	none	STRG.6800.2	1	STRG.6800.1,blat.proc3829873.chain_2889,blat.proc3829873.chain_2890,blat.proc3829873.chain_2891	4
scaffold_16	alt_acceptor	5387833	5387834	-	asmbl_16266,asmbl_16268	none	STRG.19274.1,blat.proc3829897.chain_329,blat.proc3829897.chain_330	3	STRG.19274.3	1
scaffold_6	alt_donor	13176481	13176482	+	asmbl_47417,asmbl_47418	none	STRG.8069.1,STRG.8069.2,blat.proc3829875.chain_487,blat.proc3829875.chain_488	4	STRG.8069.3,blat.proc3829875.chain_486	2
scaffold_8	alt_donor	9656041	9656042	+	asmbl_52077,asmbl_52081	none	STRG.10210.3,blat.proc3829875.chain_2730	2	STRG.10210.1,STRG.10210.2,blat.proc3829875.chain_2728,blat.proc3829875.chain_2729	4
scaffold_1	alt_acceptor	5646101	5646102	+	asmbl_1734,asmbl_1735	none	STRG.357.1,STRG.357.2,blat.proc3829871.chain_413,blat.proc3829871.chain_414	4	STRG.357.3,STRG.357.4,blat.proc3829871.chain_415	3
scaffold_9	alternate_exon	571265	571526	+	asmbl_53752	none	STRG.10779.2,Trinity_GG_5955_c2_g1_i1	2	STRG.10779.1	1
scaffold_23	retained_exon	3436954	3437001	+	asmbl_30737	none	STRG.25741.1,blat.proc3829883.chain_2650	2	blat.proc3829883.chain_2651	1
scaffold_11	alt_donor	7804304	7804305	-	asmbl_6782	none	STRG.13771.1,blat.proc3829893.chain_2256	2	STRG.13771.2,blat.proc3829893.chain_2255	2
scaffold_27	alt_donor	4161185	4161186	-	asmbl_36901	none	STRG.28855.2	1	STRG.28855.1,blat.proc3829901.chain_2050	2
scaffold_8	starts_in_intron	9576578	9576578	-	asmbl_53050	none	blat.proc3829891.chain_2361	1	STRG.10205.1,blat.proc3829891.chain_2360	2
scaffold_1	alt_acceptor	11096486	11096487	+	asmbl_2046	none	STRG.726.2	1	Trinity_GG_451_c0_g1_i4	1
scaffold_9	alt_acceptor	4198711	4198712	+	asmbl_53918	none	STRG.11011.1,blat.proc3829875.chain_3476	2	STRG.11011.2,blat.proc3829875.chain_3477	2
scaffold_17	starts_in_intron	8839518	8839518	-	asmbl_19175	none	STRG.20480.1	1	STRG.20480.2	1
scaffold_27	alternate_exon	3404336	3405340	+	asmbl_36160	none	STRG.28794.1,Trinity_GG_15929_c0_g1_i1,blat.proc3829885.chain_1872	3	STRG.28794.2	1
scaffold_5	alternate_exon	3592704	3592810	-	asmbl_45310	none	STRG.5822.3,blat.proc3829889.chain_1928	2	STRG.5822.1	1
scaffold_6	spliced_intron	19076979	19077208	+	asmbl_47813,asmbl_47815	none	STRG.8572.1,STRG.8572.4,Trinity_GG_4663_c0_g1_i2,Trinity_GG_4663_c0_g1_i5,blat.proc3829875.chain_865,blat.proc3829875.chain_867	6	Trinity_GG_4663_c0_g1_i6,blat.proc3829875.chain_868	2
scaffold_11	spliced_intron	1286686	1286928	-	asmbl_6394	none	STRG.13311.1,blat.proc3829893.chain_1749	2	blat.proc3829893.chain_1751	1
scaffold_8	alt_acceptor	9866262	9866263	+	asmbl_52100,asmbl_52104,asmbl_52106,asmbl_52107,asmbl_52108	none	STRG.10225.4,blat.proc3829875.chain_2691,blat.proc3829875.chain_2693,blat.proc3829875.chain_2694,blat.proc3829875.chain_2695	5	STRG.10225.2	1
scaffold_4	spliced_intron	4112991	4113116	-	asmbl_41222,asmbl_41224	none	STRG.4314.1,blat.proc3829889.chain_373,blat.proc3829889.chain_376	3	blat.proc3829889.chain_375	1
scaffold_5	alternate_exon	1096728	1097062	-	asmbl_45213	none	blat.proc3829889.chain_1801	1	STRG.5657.4	1
scaffold_3	retained_intron	17845439	17845779	+	asmbl_40666,asmbl_40668	none	STRG.4008.4,blat.proc3829873.chain_343	2	STRG.4008.1,blat.proc3829873.chain_341	2
scaffold_24	alt_donor	3444772	3444773	-	asmbl_32820,asmbl_32822	none	STRG.26531.4,blat.proc3829899.chain_3590	2	STRG.26531.3	1
scaffold_19	retained_intron	12821262	12821857	-	asmbl_21756,asmbl_21758,asmbl_21764,asmbl_21765	none	STRG.22593.2,blat.proc3829897.chain_3275,blat.proc3829897.chain_3277,blat.proc3829897.chain_3279,blat.proc3829897.chain_3280	5	STRG.22593.1,STRG.22593.3,blat.proc3829897.chain_3274,blat.proc3829897.chain_3278	4
scaffold_26	retained_intron	9843220	9843385	+	asmbl_35805	none	blat.proc3829885.chain_1566	1	STRG.28526.1,blat.proc3829885.chain_1557,blat.proc3829885.chain_1559	3
scaffold_1	alt_donor	4577548	4577549	-	asmbl_200	none	STRG.277.6	1	STRG.277.1,blat.proc3829887.chain_133,blat.proc3829887.chain_135,blat.proc3829887.chain_137,blat.proc3829887.chain_140	5
scaffold_8	spliced_intron	5968927	5969108	+	asmbl_51903,asmbl_51905	none	STRG.9998.1,STRG.9998.2,blat.proc3829875.chain_2512	3	blat.proc3829875.chain_2511	1
scaffold_6	spliced_intron	15945144	15945206	+	asmbl_47619,asmbl_47620	none	STRG.8316.1,STRG.8316.3	2	STRG.8316.2	1
scaffold_10	alternate_exon	9548547	9557630	+	asmbl_4676,asmbl_4680	none	STRG.12692.1,STRG.12692.2,blat.proc3829877.chain_1283	3	STRG.12692.3,Trinity_GG_7015_c2_g1_i1,blat.proc3829877.chain_1288	3
scaffold_12	starts_in_intron	12927955	12927955	+	asmbl_9001	none	Trinity_GG_8345_c0_g1_i3,blat.proc3829877.chain_3607	2	STRG.15167.1,blat.proc3829877.chain_3605	2
scaffold_9	skipped_exon	17851315	17852001	+	asmbl_54632	none	STRG.11860.2	1	STRG.11860.1,Trinity_GG_6607_c0_g1_i6,blat.proc3829877.chain_589	3
scaffold_7	spliced_intron	3955080	3955398	-	asmbl_49643,asmbl_49644,asmbl_49648,asmbl_49649,asmbl_49650	none	STRG.8791.1,STRG.8791.2,blat.proc3829891.chain_1086,blat.proc3829891.chain_1088,blat.proc3829891.chain_1091,blat.proc3829891.chain_1092,blat.proc3829891.chain_1093	7	blat.proc3829891.chain_1087	1
scaffold_4	spliced_intron	14648429	14648648	-	asmbl_41808,asmbl_41809,asmbl_41813,asmbl_41816	none	STRG.5094.1,STRG.5094.2,blat.proc3829889.chain_1118,blat.proc3829889.chain_1119,blat.proc3829889.chain_1121,blat.proc3829889.chain_1122	6	STRG.5094.3,blat.proc3829889.chain_1117,blat.proc3829889.chain_1123	3
scaffold_12	starts_in_intron	3970372	3970372	-	asmbl_7512	none	STRG.14579.1	1	STRG.14579.2,blat.proc3829893.chain_2877	2
scaffold_2	spliced_intron	690723	690918	+	asmbl_24116	none	STRG.1553.4	1	STRG.1553.3	1
scaffold_17	alt_acceptor	5917643	5917644	-	asmbl_18997	none	STRG.20267.2,blat.proc3829897.chain_1169	2	STRG.20267.1	1
scaffold_10	retained_intron	5687438	5687977	+	asmbl_4470,asmbl_4472	none	STRG.12387.1,STRG.12387.2,blat.proc3829877.chain_1042	3	STRG.12387.3,blat.proc3829877.chain_1043	2
scaffold_17	alt_acceptor	14546292	14546293	+	asmbl_18531	none	STRG.20918.5	1	STRG.20918.1,STRG.20918.3,STRG.20918.4,blat.proc3829881.chain_1763	4
scaffold_13	alt_acceptor	12104906	12104907	+	asmbl_11315	none	STRG.16334.1,Trinity_GG_8989_c0_g1_i1,blat.proc3829879.chain_1102	3	Trinity_GG_8989_c0_g1_i5,blat.proc3829879.chain_1104	2
scaffold_13	spliced_intron	2321236	2321329	+	asmbl_10564,asmbl_10569,asmbl_10571,asmbl_10573,asmbl_10576,asmbl_10588,asmbl_10589,asmbl_10590,asmbl_10591,asmbl_10592	none	STRG.15543.2,STRG.15543.3,STRG.15543.4,STRG.15543.5,STRG.15543.6,STRG.15543.7,STRG.15543.8,STRG.15543.9,Trinity_GG_8511_c1_g1_i5,blat.proc3829879.chain_168,blat.proc3829879.chain_170	11	blat.proc3829879.chain_173	1
scaffold_3	alt_acceptor	17845839	17845840	+	asmbl_40665,asmbl_40667	none	STRG.4008.2,STRG.4008.3,blat.proc3829873.chain_342	3	STRG.4008.1,blat.proc3829873.chain_341	2
scaffold_20	alt_donor	10382921	10382922	+	asmbl_26107,asmbl_26108,asmbl_26112	none	STRG.23569.1,Trinity_GG_12979_c0_g1_i5,Trinity_GG_12979_c0_g1_i6,blat.proc3829883.chain_590,blat.proc3829883.chain_591,blat.proc3829883.chain_592	6	STRG.23569.2,STRG.23569.3,STRG.23569.5,Trinity_GG_12979_c0_g1_i2,blat.proc3829883.chain_594	5
scaffold_2	alternate_exon	802050	802080	+	asmbl_24129	none	STRG.1558.2	1	STRG.1558.1,blat.proc3829871.chain_1575	2
scaffold_2	alt_donor	2890067	2890068	-	asmbl_22954,asmbl_22960,asmbl_22966	none	STRG.1733.1,STRG.1733.4,blat.proc3829887.chain_1493,blat.proc3829887.chain_1494	4	STRG.1733.2,STRG.1733.3,blat.proc3829887.chain_1492,blat.proc3829887.chain_1495,blat.proc3829887.chain_1497,blat.proc3829887.chain_1498,blat.proc3829887.chain_1500	7
scaffold_16	retained_intron	14512399	14512482	-	asmbl_16630	none	blat.proc3829897.chain_772	1	STRG.19819.1,blat.proc3829897.chain_770,blat.proc3829897.chain_771,blat.proc3829897.chain_774	4
scaffold_25	alt_acceptor	5557695	5557696	-	asmbl_34241	none	STRG.27437.3	1	STRG.27437.1,blat.proc3829901.chain_756	2
scaffold_4	starts_in_intron	16567526	16567526	-	asmbl_41948	none	Trinity_GG_19945_c0_g1_i3,blat.proc3829889.chain_1306	2	STRG.5231.1,STRG.5231.2,blat.proc3829889.chain_1305	3
scaffold_17	retained_intron	13962267	13962296	-	asmbl_19437,asmbl_19438,asmbl_19439	none	STRG.20874.3,Trinity_GG_28720_c1_g1_i1,blat.proc3829897.chain_1760,blat.proc3829897.chain_1763	4	STRG.20874.1,STRG.20874.2	2
scaffold_13	starts_in_intron	8237460	8237460	-	asmbl_9920	none	blat.proc3829895.chain_900	1	STRG.16101.1,blat.proc3829895.chain_898,blat.proc3829895.chain_899,blat.proc3829895.chain_901	4
scaffold_7	starts_in_intron	10549211	10549211	-	asmbl_49941	none	STRG.9219.2,blat.proc3829891.chain_1472	2	STRG.9219.1,blat.proc3829891.chain_1473	2
scaffold_2	spliced_intron	19521884	19522271	-	asmbl_23889	none	STRG.2810.2	1	STRG.2810.1,Trinity_GG_18564_c0_g1_i2,Trinity_GG_18564_c0_g2_i1,blat.proc3829887.chain_2636,blat.proc3829887.chain_2638	5
scaffold_5	alt_donor	17001569	17001570	+	asmbl_44786	none	STRG.6873.1,blat.proc3829873.chain_2978	2	STRG.6873.2,blat.proc3829873.chain_2979	2
scaffold_21	skipped_exon	10004467	10005327	-	asmbl_28022	none	STRG.24448.2,blat.proc3829899.chain_1511	2	STRG.24448.1,blat.proc3829899.chain_1510	2
scaffold_10	alt_acceptor	13046471	13046472	-	asmbl_3756,asmbl_3758	none	STRG.12902.1,blat.proc3829893.chain_1402	2	STRG.12902.2,blat.proc3829893.chain_1403	2
scaffold_10	starts_in_intron	2486139	2486139	+	asmbl_4258	none	Trinity_GG_6718_c0_g1_i3	1	STRG.12062.1,Trinity_GG_6718_c0_g1_i1,Trinity_GG_6718_c0_g1_i2,blat.proc3829877.chain_774,blat.proc3829877.chain_776	5
scaffold_2	starts_in_intron	4265823	4265823	-	asmbl_23087	none	blat.proc3829887.chain_1663	1	STRG.1858.1,blat.proc3829887.chain_1664	2
scaffold_8	retained_intron	9937116	9937196	-	asmbl_53075	none	blat.proc3829891.chain_2423	1	STRG.10241.1,STRG.10241.2,blat.proc3829891.chain_2424	3
scaffold_1	alternate_exon	20451305	20451590	+	asmbl_2622	none	STRG.1392.2	1	STRG.1392.1,Trinity_GG_808_c0_g1_i3,blat.proc3829871.chain_1424	3
scaffold_2	alternate_exon	8057121	8057391	-	asmbl_23323	none	STRG.2095.3,Trinity_GG_18188_c1_g1_i1,blat.proc3829887.chain_2010	3	STRG.2095.1,STRG.2095.2,STRG.2095.4,blat.proc3829887.chain_2005,blat.proc3829887.chain_2006,blat.proc3829887.chain_2008,blat.proc3829887.chain_2009	7
scaffold_4	ends_in_intron	17806449	17806449	+	asmbl_43414,asmbl_43416	none	STRG.5378.2,blat.proc3829873.chain_1626	2	blat.proc3829873.chain_1627,blat.proc3829873.chain_1628	2
scaffold_19	alt_acceptor	6677712	6677713	-	asmbl_21428,asmbl_21430	none	STRG.22172.1,blat.proc3829897.chain_2921,blat.proc3829897.chain_2922	3	STRG.22172.2	1
scaffold_21	retained_intron	1054388	1054549	-	asmbl_27401	none	Trinity_GG_30261_c0_g1_i7,blat.proc3829899.chain_851	2	STRG.23776.2,STRG.23776.3,Trinity_GG_30261_c0_g1_i11,blat.proc3829899.chain_850	4
scaffold_16	alternate_exon	7115699	7116003	-	asmbl_16339	none	STRG.19378.2,Trinity_GG_27893_c1_g1_i1,blat.proc3829897.chain_401	3	Trinity_GG_27893_c0_g1_i1,blat.proc3829897.chain_400	2
scaffold_26	spliced_intron	5294667	5294755	+	asmbl_35500	none	STRG.28216.1,Trinity_GG_15565_c0_g1_i3,blat.proc3829885.chain_1180	3	blat.proc3829885.chain_1181	1
scaffold_300	spliced_intron	2945	3159	+	asmbl_40849,asmbl_40850,asmbl_40851,asmbl_40852	none	STRG.30247.1,STRG.30247.2,STRG.30247.3,blat.proc3829885.chain_3278,blat.proc3829885.chain_3279,blat.proc3829885.chain_3281	6	blat.proc3829885.chain_3282	1
scaffold_3	alt_acceptor	6656884	6656885	+	asmbl_40060,asmbl_40063,asmbl_40064	none	STRG.3290.1,STRG.3290.2,STRG.3290.3,Trinity_GG_1861_c0_g1_i14,blat.proc3829871.chain_3465	5	STRG.3290.4,STRG.3290.5,blat.proc3829871.chain_3458,blat.proc3829871.chain_3459,blat.proc3829871.chain_3460,blat.proc3829871.chain_3461,blat.proc3829871.chain_3464,blat.proc3829871.chain_3466,blat.proc3829871.chain_3467,blat.proc3829871.chain_3468,blat.proc3829871.chain_3469,blat.proc3829871.chain_3470	12
scaffold_9	alt_donor	4953097	4953098	-	asmbl_54943	none	STRG.11061.3	1	STRG.11061.1,blat.proc3829891.chain_3213	2
scaffold_8	retained_intron	15345104	15345457	+	asmbl_52395	none	STRG.10554.2,Trinity_GG_5868_c0_g1_i1,blat.proc3829875.chain_3049	3	STRG.10554.1,Trinity_GG_5868_c0_g1_i2,blat.proc3829875.chain_3048	3
scaffold_12	alternate_exon	5466481	5466627	-	asmbl_7629,asmbl_7630	none	STRG.14690.3,STRG.14690.4,blat.proc3829893.chain_3103	3	STRG.14690.1,STRG.14690.2,STRG.14690.5,blat.proc3829893.chain_3104,blat.proc3829893.chain_3105	5
scaffold_12	alternate_exon	9002007	9002158	-	asmbl_7764	none	blat.proc3829893.chain_3268	1	STRG.14892.1,Trinity_GG_25309_c0_g1_i2,blat.proc3829893.chain_3266	3
scaffold_24	ends_in_intron	5940275	5940275	+	asmbl_32267	none	blat.proc3829883.chain_3550	1	STRG.26645.1,blat.proc3829883.chain_3535,blat.proc3829883.chain_3537,blat.proc3829883.chain_3542,blat.proc3829883.chain_3543,blat.proc3829883.chain_3544,blat.proc3829883.chain_3545,blat.proc3829883.chain_3547,blat.proc3829883.chain_3548	9
scaffold_11	alt_donor	3796547	3796548	-	asmbl_6561	none	STRG.13491.1,blat.proc3829893.chain_1952	2	STRG.13491.2,blat.proc3829893.chain_1953	2
scaffold_18	alt_acceptor	2394186	2394187	-	asmbl_19761	none	STRG.21108.3,Trinity_GG_28850_c0_g1_i3,blat.proc3829897.chain_2017	3	STRG.21108.1,blat.proc3829897.chain_2018	2
scaffold_2	alt_acceptor	13995435	13995436	+	asmbl_24896,asmbl_24897	none	STRG.2394.1,STRG.2394.3	2	STRG.2394.2	1
scaffold_16	alt_acceptor	5804960	5804961	+	asmbl_17021	none	STRG.19311.3	1	STRG.19311.1,Trinity_GG_10534_c0_g1_i2,Trinity_GG_10534_c0_g1_i4,blat.proc3829881.chain_94,blat.proc3829881.chain_95	5
scaffold_5	retained_intron	14125735	14126570	+	asmbl_44573	none	Trinity_GG_3590_c2_g1_i1,blat.proc3829873.chain_2716	2	blat.proc3829873.chain_2717	1
scaffold_22	starts_in_intron	1654037	1654037	+	asmbl_29219	none	Trinity_GG_13669_c0_g1_i1,blat.proc3829883.chain_1774	2	STRG.24736.1,Trinity_GG_13669_c0_g1_i2,blat.proc3829883.chain_1773	3
scaffold_15	alternate_exon	12641490	12641618	-	asmbl_15614	none	STRG.18712.2	1	STRG.18712.1,blat.proc3829895.chain_3461	2
scaffold_23	starts_in_intron	10974736	10974736	+	asmbl_31186,asmbl_31189,asmbl_31194	none	Trinity_GG_14524_c0_g1_i13,Trinity_GG_14524_c0_g1_i8,blat.proc3829883.chain_3193,blat.proc3829883.chain_3194,blat.proc3829883.chain_3203	5	STRG.26281.1,STRG.26281.2,blat.proc3829883.chain_3195,blat.proc3829883.chain_3196,blat.proc3829883.chain_3198,blat.proc3829883.chain_3199,blat.proc3829883.chain_3200	7
scaffold_19	ends_in_intron	12487093	12487093	-	asmbl_21711	none	Trinity_GG_29570_c0_g3_i1,blat.proc3829897.chain_3289	2	STRG.22567.1,blat.proc3829897.chain_3286	2
scaffold_5	ends_in_intron	16508327	16508327	+	asmbl_44769	none	blat.proc3829873.chain_2954	1	STRG.6832.1,Trinity_GG_3732_c0_g1_i1,blat.proc3829873.chain_2953,blat.proc3829873.chain_2955	4
scaffold_13	spliced_intron	1230177	1230306	+	asmbl_10519	none	STRG.15478.3	1	STRG.15478.1,STRG.15478.2,Trinity_GG_8526_c1_g1_i2,Trinity_GG_8526_c1_g1_i3,blat.proc3829879.chain_210,blat.proc3829879.chain_211	6
scaffold_18	alternate_exon	10414060	10414148	-	asmbl_20142	none	STRG.21631.2,blat.proc3829897.chain_2461	2	STRG.21631.1,blat.proc3829897.chain_2460	2
scaffold_2	retained_intron	13401811	13401905	+	asmbl_24881	none	STRG.2361.2,Trinity_GG_1332_c0_g1_i1,blat.proc3829871.chain_2475	3	STRG.2361.1,blat.proc3829871.chain_2474	2
scaffold_28	starts_in_intron	231646	231646	+	asmbl_37950,asmbl_37951,asmbl_37952,asmbl_37953	none	STRG.29233.2,STRG.29233.3,blat.proc3829885.chain_2388,blat.proc3829885.chain_2391	4	STRG.29233.1	1
scaffold_6	alt_donor	19116612	19116613	-	asmbl_49233,asmbl_49234	none	STRG.8568.1,STRG.8568.3,Trinity_GG_21904_c0_g1_i1,Trinity_GG_21904_c0_g1_i3,blat.proc3829891.chain_897,blat.proc3829891.chain_898	6	STRG.8568.5	1
scaffold_4	retained_intron	5651747	5651850	-	asmbl_41356	none	Trinity_GG_19533_c0_g1_i2,blat.proc3829889.chain_602	2	STRG.4469.1,STRG.4469.2,STRG.4469.3,STRG.4469.4,blat.proc3829889.chain_603,blat.proc3829889.chain_605,blat.proc3829889.chain_606,blat.proc3829889.chain_607,blat.proc3829889.chain_608,blat.proc3829889.chain_609,blat.proc3829889.chain_610,blat.proc3829889.chain_611,blat.proc3829889.chain_612,blat.proc3829889.chain_613	14
scaffold_11	starts_in_intron	5519872	5519872	-	asmbl_6649	none	blat.proc3829893.chain_2082	1	STRG.13613.1,blat.proc3829893.chain_2081	2
scaffold_21	retained_intron	1151006	1151165	+	asmbl_28351	none	STRG.23774.1,blat.proc3829883.chain_939	2	STRG.23774.2,Trinity_GG_13181_c0_g1_i2,blat.proc3829883.chain_940	3
scaffold_21	retained_intron	10098326	10098427	+	asmbl_28866,asmbl_28867	none	STRG.24457.1,STRG.24457.2	2	STRG.24457.3	1
scaffold_15	alt_acceptor	9047456	9047457	-	asmbl_15390	none	STRG.18440.2,blat.proc3829895.chain_3212	2	STRG.18440.1,blat.proc3829895.chain_3211	2
scaffold_10	skipped_exon	16821281	16823004	+	asmbl_5001	none	STRG.13115.2	1	STRG.13115.1	1
scaffold_28	starts_in_intron	9442824	9442824	-	asmbl_37841	none	blat.proc3829901.chain_3081	1	STRG.29952.1,blat.proc3829901.chain_3078,blat.proc3829901.chain_3079	3
scaffold_1	alt_acceptor	7370029	7370030	-	asmbl_440,asmbl_441	none	STRG.517.2,STRG.517.5	2	STRG.517.3	1
scaffold_28	alt_acceptor	3293148	3293149	-	asmbl_37471	none	STRG.29524.3	1	STRG.29524.1,STRG.29524.2,blat.proc3829901.chain_2629,blat.proc3829901.chain_2630	4
scaffold_19	retained_intron	12491455	12492121	+	asmbl_22615	none	STRG.22568.3,blat.proc3829881.chain_3534	2	STRG.22568.4,blat.proc3829881.chain_3537	2
scaffold_3	ends_in_intron	7286533	7286533	-	asmbl_38915	none	blat.proc3829887.chain_3068	1	STRG.3325.1,STRG.3325.2,STRG.3325.3,blat.proc3829887.chain_3069,blat.proc3829887.chain_3070,blat.proc3829887.chain_3071	6
scaffold_7	spliced_intron	8795676	8795757	+	asmbl_50941	none	blat.proc3829875.chain_1557	1	blat.proc3829875.chain_1556	1
scaffold_8	skipped_exon	9166127	9167025	-	asmbl_53014,asmbl_53015	none	STRG.10173.2,blat.proc3829891.chain_2230	2	STRG.10173.1,STRG.10173.3,blat.proc3829891.chain_2227,blat.proc3829891.chain_2228	4
scaffold_13	retained_intron	1013360	1013456	+	asmbl_10488	none	STRG.15460.1,Trinity_GG_8499_c0_g1_i1,blat.proc3829879.chain_138	3	STRG.15460.2	1
scaffold_5	retained_intron	11990962	11991389	-	asmbl_45814	none	blat.proc3829889.chain_2522	1	STRG.6447.1,STRG.6447.3,STRG.6447.4,blat.proc3829889.chain_2519,blat.proc3829889.chain_2520,blat.proc3829889.chain_2521	6
scaffold_10	ends_in_intron	343356	343356	-	asmbl_2860	none	blat.proc3829893.chain_296	1	STRG.11910.1,STRG.11910.2,blat.proc3829893.chain_295,blat.proc3829893.chain_298	4
scaffold_21	spliced_intron	5537847	5538423	-	asmbl_27700,asmbl_27701,asmbl_27705	none	STRG.24073.1,blat.proc3829899.chain_1165,blat.proc3829899.chain_1167	3	STRG.24073.2,STRG.24073.3,Trinity_GG_30443_c0_g1_i6,blat.proc3829899.chain_1166,blat.proc3829899.chain_1168	5
scaffold_19	alternate_exon	10220926	10222450	+	asmbl_22436	none	STRG.22389.3	1	STRG.22389.5,blat.proc3829881.chain_3316	2
scaffold_14	spliced_intron	11513522	11513728	+	asmbl_12364	none	STRG.17466.2	1	STRG.17466.1,Trinity_GG_9616_c0_g1_i2,Trinity_GG_9616_c0_g1_i3,blat.proc3829879.chain_2177,blat.proc3829879.chain_2178	5
scaffold_23	retained_exon	7512954	7513091	-	asmbl_31751	none	STRG.26043.2,blat.proc3829899.chain_3151	2	STRG.26043.3,blat.proc3829899.chain_3152	2
scaffold_7	spliced_intron	15272158	15272574	+	asmbl_51308,asmbl_51313,asmbl_51314,asmbl_51316,asmbl_51319	none	STRG.9532.1,STRG.9532.4,blat.proc3829875.chain_1982,blat.proc3829875.chain_1984,blat.proc3829875.chain_1986,blat.proc3829875.chain_1987	6	STRG.9532.2,STRG.9532.3,blat.proc3829875.chain_1981,blat.proc3829875.chain_1985	4
scaffold_3	alt_donor	7917879	7917880	-	asmbl_38948,asmbl_38950,asmbl_38951,asmbl_38952,asmbl_38953	none	STRG.3375.1,STRG.3375.2,STRG.3375.3,STRG.3375.5,blat.proc3829887.chain_3073,blat.proc3829887.chain_3074	6	STRG.3375.4	1
scaffold_11	starts_in_intron	5073112	5073112	-	asmbl_6624	none	blat.proc3829893.chain_2027	1	STRG.13581.1,blat.proc3829893.chain_2028	2
scaffold_4	retained_intron	11075139	11075491	+	asmbl_43031	none	STRG.4827.3,Trinity_GG_2673_c1_g1_i1,blat.proc3829873.chain_1146	3	STRG.4827.2,Trinity_GG_2673_c0_g1_i2,blat.proc3829873.chain_1144	3
scaffold_4	starts_in_intron	8234412	8234412	-	asmbl_41503	none	Trinity_GG_19588_c0_g1_i2,blat.proc3829889.chain_704	2	STRG.4647.1,blat.proc3829889.chain_705	2
scaffold_26	ends_in_intron	10154821	10154821	+	asmbl_35824,asmbl_35825,asmbl_35827	none	STRG.28514.1,STRG.28514.2,blat.proc3829885.chain_1553,blat.proc3829885.chain_1554	4	STRG.28514.3,blat.proc3829885.chain_1555	2
scaffold_1	spliced_intron	5962592	5962698	-	asmbl_308,asmbl_312	none	STRG.395.1,blat.proc3829887.chain_271,blat.proc3829887.chain_273	3	blat.proc3829887.chain_272	1
scaffold_8	spliced_intron	10793464	10793568	+	asmbl_52171	none	STRG.10300.3,blat.proc3829875.chain_2820	2	STRG.10300.1,blat.proc3829875.chain_2822	2
scaffold_10	spliced_intron	5849287	5849521	-	asmbl_3307	none	STRG.12395.3,blat.proc3829893.chain_857	2	STRG.12395.1,STRG.12395.2,blat.proc3829893.chain_858	3
scaffold_5	alt_donor	11992074	11992075	-	asmbl_45816	none	STRG.6447.3	1	STRG.6447.5	1
scaffold_27	starts_in_intron	7250966	7250966	+	asmbl_36393	none	blat.proc3829885.chain_2135	1	STRG.29065.1,Trinity_GG_16052_c0_g1_i2,blat.proc3829885.chain_2134	3
scaffold_3	ends_in_intron	13990270	13990270	+	asmbl_40441,asmbl_40442	none	STRG.3741.5,Trinity_GG_2070_c0_g2_i1,blat.proc3829873.chain_89	3	STRG.3741.1,STRG.3741.2,STRG.3741.3,STRG.3741.4,Trinity_GG_2070_c0_g1_i1,Trinity_GG_2070_c0_g1_i2,Trinity_GG_2070_c0_g1_i4,blat.proc3829873.chain_86,blat.proc3829873.chain_87,blat.proc3829873.chain_88	10
scaffold_24	starts_in_intron	7613801	7613801	-	asmbl_33026	none	Trinity_GG_31982_c0_g1_i1,blat.proc3829901.chain_75	2	STRG.26772.1,blat.proc3829901.chain_76	2
scaffold_10	spliced_intron	7765135	7765301	-	asmbl_3465,asmbl_3466	none	STRG.12555.1,STRG.12555.2,blat.proc3829893.chain_1044	3	Trinity_GG_24022_c0_g1_i4,blat.proc3829893.chain_1042	2
scaffold_3	ends_in_intron	16339041	16339041	-	asmbl_39444	none	Trinity_GG_19178_c0_g1_i4,blat.proc3829887.chain_3726	2	STRG.3905.1,blat.proc3829887.chain_3725	2
scaffold_646	retained_intron	4980	5090	-	asmbl_49431	none	STRG.30390.2,blat.proc3829901.chain_3440	2	STRG.30390.1,blat.proc3829901.chain_3441	2
scaffold_6	alt_donor	18836329	18836330	+	asmbl_47795,asmbl_47796,asmbl_47797,asmbl_47799,asmbl_47800,asmbl_47801,asmbl_47803	none	STRG.8547.1,STRG.8547.2,STRG.8547.3,STRG.8547.4,STRG.8547.6,Trinity_GG_4669_c0_g1_i6,blat.proc3829875.chain_887,blat.proc3829875.chain_889,blat.proc3829875.chain_890,blat.proc3829875.chain_891	10	STRG.8547.5,blat.proc3829875.chain_888	2
scaffold_5	skipped_exon	4683049	4684210	-	asmbl_45372	none	STRG.5919.4	1	blat.proc3829889.chain_2027,blat.proc3829889.chain_2028,blat.proc3829889.chain_2032,blat.proc3829889.chain_2033	4
scaffold_12	ends_in_intron	14291526	14291526	-	asmbl_8135	none	Trinity_GG_25533_c3_g1_i1,blat.proc3829893.chain_3654	2	STRG.15255.1	1
scaffold_11	alternate_exon	11046769	11046889	-	asmbl_6991	none	STRG.14055.3	1	STRG.14055.1,STRG.14055.2	2
scaffold_13	retained_intron	11581870	11581964	+	asmbl_11267	none	blat.proc3829879.chain_1062	1	STRG.16293.1,STRG.16293.2,STRG.16293.3,blat.proc3829879.chain_1061,blat.proc3829879.chain_1064,blat.proc3829879.chain_1065	6
scaffold_18	starts_in_intron	853890	853890	-	asmbl_19639	none	blat.proc3829897.chain_1916	1	STRG.21004.1,blat.proc3829897.chain_1915,blat.proc3829897.chain_1918	3
scaffold_3	skipped_exon	13424800	13425865	-	asmbl_39212,asmbl_39213,asmbl_39215,asmbl_39216	none	STRG.3690.1,STRG.3690.2,STRG.3690.3,STRG.3690.4	4	STRG.3690.5	1
scaffold_7	alt_donor	12082966	12082967	+	asmbl_51099	none	STRG.9310.2	1	STRG.9310.3	1
scaffold_6	alt_donor	8010926	8010927	-	asmbl_48460	none	STRG.7672.1,blat.proc3829889.chain_3654	2	STRG.7672.2,blat.proc3829889.chain_3653	2
scaffold_27	alt_acceptor	951087	951088	-	asmbl_36682	none	STRG.28570.2	1	STRG.28570.1,blat.proc3829901.chain_1765	2
scaffold_2	ends_in_intron	6765798	6765798	+	asmbl_24523,asmbl_24524	none	Trinity_GG_1102_c0_g1_i10,Trinity_GG_1102_c0_g1_i6,blat.proc3829871.chain_2006,blat.proc3829871.chain_2007	4	STRG.2035.1,Trinity_GG_1102_c0_g1_i1,Trinity_GG_1102_c0_g1_i11,Trinity_GG_1102_c0_g1_i2,Trinity_GG_1102_c0_g1_i4,Trinity_GG_1102_c0_g1_i5,Trinity_GG_1102_c0_g1_i7,blat.proc3829871.chain_2005,blat.proc3829871.chain_2008,blat.proc3829871.chain_2010,blat.proc3829871.chain_2011,blat.proc3829871.chain_2012,blat.proc3829871.chain_2013	13
scaffold_25	retained_intron	6324446	6324641	-	asmbl_34330,asmbl_34331,asmbl_34335	none	STRG.27499.2,Trinity_GG_32449_c0_g1_i7,blat.proc3829901.chain_863,blat.proc3829901.chain_864	4	STRG.27499.1,STRG.27499.3,blat.proc3829901.chain_861,blat.proc3829901.chain_862,blat.proc3829901.chain_865	5
scaffold_7	retained_intron	11413023	11413205	+	asmbl_51053	none	STRG.9275.3,blat.proc3829875.chain_1663	2	STRG.9275.1,Trinity_GG_5112_c0_g1_i4,blat.proc3829875.chain_1662,blat.proc3829875.chain_1664	4
scaffold_24	alt_donor	3444862	3444863	-	asmbl_32821	none	STRG.26531.3	1	STRG.26531.4,blat.proc3829899.chain_3590	2
scaffold_16	ends_in_intron	11395752	11395752	-	asmbl_16521,asmbl_16524	none	STRG.19663.5,Trinity_GG_28017_c0_g1_i1,blat.proc3829897.chain_605	3	STRG.19663.3,STRG.19663.4,blat.proc3829897.chain_606,blat.proc3829897.chain_607	4
scaffold_15	alt_donor	489816	489817	+	asmbl_13920	none	STRG.17896.2,Trinity_GG_9840_c0_g1_i3,blat.proc3829879.chain_2581	3	STRG.17896.1	1
scaffold_4	retained_intron	7380297	7380425	-	asmbl_41453	none	STRG.4576.1,blat.proc3829889.chain_685	2	STRG.4576.2	1
scaffold_16	alt_donor	8502381	8502382	+	asmbl_17195	none	STRG.19465.2	1	STRG.19465.1	1
scaffold_10	alternate_exon	11105577	11108052	+	asmbl_4726	none	STRG.12772.1,blat.proc3829877.chain_1339	2	blat.proc3829877.chain_1338	1
scaffold_17	spliced_intron	5341453	5341640	+	asmbl_17948	none	STRG.20245.3	1	STRG.20245.1,Trinity_GG_11095_c1_g1_i1,blat.proc3829881.chain_1053	3
scaffold_6	retained_intron	14639697	14639780	-	asmbl_48957	none	blat.proc3829891.chain_504	1	STRG.8224.1,blat.proc3829891.chain_505	2
scaffold_8	retained_exon	11854228	11854268	+	asmbl_52271	none	blat.proc3829875.chain_2980	1	STRG.10382.3,blat.proc3829875.chain_2968,blat.proc3829875.chain_2975,blat.proc3829875.chain_2979	4
scaffold_10	retained_intron	5856417	5857533	-	asmbl_3312	none	blat.proc3829893.chain_870	1	blat.proc3829893.chain_873	1
scaffold_52	spliced_intron	6286	6560	+	asmbl_46476,asmbl_46477	none	STRG.30038.1,STRG.30038.2,Trinity_GG_16629_c0_g1_i2,Trinity_GG_16629_c0_g1_i3,blat.proc3829885.chain_3100,blat.proc3829885.chain_3102	6	STRG.30038.3,Trinity_GG_16629_c0_g1_i5,blat.proc3829885.chain_3099	3
scaffold_15	retained_intron	15179285	15179381	+	asmbl_14677,asmbl_14682	none	blat.proc3829879.chain_3481,blat.proc3829879.chain_3482	2	STRG.18906.4	1
scaffold_21	retained_exon	5774666	5774824	-	asmbl_27719	none	STRG.24099.2,blat.proc3829899.chain_1199	2	STRG.24099.3	1
scaffold_11	starts_in_intron	3767907	3767907	-	asmbl_6553	none	Trinity_GG_24570_c0_g1_i4	1	STRG.13488.1,STRG.13488.3,STRG.13488.4,blat.proc3829893.chain_1962	4
scaffold_2	retained_intron	14192137	14192314	-	asmbl_23579	none	Trinity_GG_18310_c0_g1_i1,blat.proc3829887.chain_2211	2	STRG.2417.1,STRG.2417.2,blat.proc3829887.chain_2207,blat.proc3829887.chain_2208,blat.proc3829887.chain_2209,blat.proc3829887.chain_2210,blat.proc3829887.chain_2212	7
scaffold_2	alt_acceptor	9241512	9241513	-	asmbl_23387	none	STRG.2169.2	1	STRG.2169.1,blat.proc3829887.chain_2092	2
scaffold_14	retained_intron	15345450	15346208	-	asmbl_13695	none	STRG.17749.2,blat.proc3829895.chain_2512	2	STRG.17749.3,blat.proc3829895.chain_2514	2
scaffold_2	alt_donor	18610514	18610515	-	asmbl_23817	none	STRG.2736.3,Trinity_GG_18522_c0_g1_i2,blat.proc3829887.chain_2559	3	STRG.2736.2	1
scaffold_16	spliced_intron	3706689	3706988	+	asmbl_16936,asmbl_16938,asmbl_16939	none	STRG.19166.1,blat.proc3829881.chain_34,blat.proc3829881.chain_35,blat.proc3829881.chain_36	4	blat.proc3829881.chain_33	1
scaffold_22	alt_acceptor	10896682	10896683	-	asmbl_30398,asmbl_30400	none	STRG.25411.2,STRG.25411.3,blat.proc3829899.chain_2451	3	STRG.25411.1,blat.proc3829899.chain_2452	2
scaffold_15	starts_in_intron	12041932	12041932	+	asmbl_14461	none	Trinity_GG_10225_c0_g1_i1,blat.proc3829879.chain_3222	2	STRG.18655.1,STRG.18655.2,blat.proc3829879.chain_3223	3
scaffold_4	starts_in_intron	12709370	12709370	+	asmbl_43074	none	blat.proc3829873.chain_1195	1	STRG.4912.1,STRG.4912.2,blat.proc3829873.chain_1197,blat.proc3829873.chain_1200,blat.proc3829873.chain_1201	5
scaffold_2	retained_intron	15266137	15266197	+	asmbl_25021,asmbl_25028,asmbl_25030,asmbl_25031	none	STRG.2480.2,STRG.2480.3,blat.proc3829871.chain_2515,blat.proc3829871.chain_2520,blat.proc3829871.chain_2523	5	STRG.2480.1,blat.proc3829871.chain_2514,blat.proc3829871.chain_2516,blat.proc3829871.chain_2517,blat.proc3829871.chain_2518,blat.proc3829871.chain_2519,blat.proc3829871.chain_2522	7
scaffold_16	ends_in_intron	7055706	7055706	+	asmbl_17113	none	Trinity_GG_10606_c0_g1_i1,blat.proc3829881.chain_243	2	STRG.19362.1,blat.proc3829881.chain_244	2
scaffold_9	alt_donor	14817752	14817753	-	asmbl_55462	none	STRG.11693.5,blat.proc3829893.chain_3	2	STRG.11693.1,STRG.11693.3,STRG.11693.4,STRG.11693.6,blat.proc3829893.chain_10,blat.proc3829893.chain_6,blat.proc3829893.chain_7,blat.proc3829893.chain_8	8
scaffold_14	spliced_intron	5451274	5451514	+	asmbl_11991	none	Trinity_GG_9352_c0_g1_i3,blat.proc3829879.chain_1727	2	Trinity_GG_9352_c0_g1_i1,blat.proc3829879.chain_1725	2
scaffold_21	alternate_exon	2483730	2483800	-	asmbl_27494	none	STRG.23859.2	1	STRG.23859.1,STRG.23859.3,STRG.23859.4,Trinity_GG_30317_c0_g1_i2,blat.proc3829899.chain_950	5
scaffold_8	alternate_exon	3603404	3603542	+	asmbl_51771	none	STRG.9847.1,blat.proc3829875.chain_2272	2	STRG.9847.2,blat.proc3829875.chain_2273	2
scaffold_14	alt_donor	13601232	13601233	+	asmbl_12473,asmbl_12474	none	blat.proc3829879.chain_2306,blat.proc3829879.chain_2307	2	STRG.17629.1,STRG.17629.2	2
scaffold_26	retained_intron	9781574	9781736	+	asmbl_35792	none	Trinity_GG_15744_c0_g1_i2,blat.proc3829885.chain_1480	2	STRG.28500.1,Trinity_GG_15744_c0_g1_i1,blat.proc3829885.chain_1481	3
scaffold_7	alt_donor	10340329	10340330	-	asmbl_49932	none	STRG.9204.2	1	STRG.9204.1,STRG.9204.3,Trinity_GG_22206_c0_g1_i1,blat.proc3829891.chain_1450	4
scaffold_21	starts_in_intron	6988761	6988761	-	asmbl_27796	none	Trinity_GG_30479_c0_g1_i1,blat.proc3829899.chain_1234	2	STRG.24212.1,STRG.24212.2,blat.proc3829899.chain_1233,blat.proc3829899.chain_1235	4
scaffold_1	starts_in_intron	13462235	13462235	-	asmbl_815	none	blat.proc3829887.chain_845	1	STRG.958.1,Trinity_GG_17514_c1_g1_i3,blat.proc3829887.chain_846	3
scaffold_1	starts_in_intron	5202083	5202083	+	asmbl_1703,asmbl_1708	none	STRG.323.3,blat.proc3829871.chain_397,blat.proc3829871.chain_401	3	STRG.323.1,STRG.323.2,blat.proc3829871.chain_396,blat.proc3829871.chain_398,blat.proc3829871.chain_399,blat.proc3829871.chain_400	6
scaffold_20	retained_intron	2631420	2631530	-	asmbl_26581	none	Trinity_GG_29846_c2_g1_i3,blat.proc3829899.chain_21	2	STRG.22995.3	1
scaffold_6	starts_in_intron	11498995	11498995	+	asmbl_47275	none	Trinity_GG_4344_c0_g1_i1,blat.proc3829875.chain_309	2	STRG.7940.1,Trinity_GG_4344_c0_g2_i1,Trinity_GG_4344_c0_g2_i3,blat.proc3829875.chain_310,blat.proc3829875.chain_312	5
scaffold_14	ends_in_intron	8415934	8415934	+	asmbl_12224	none	blat.proc3829879.chain_2013	1	STRG.17265.1,STRG.17265.2,blat.proc3829879.chain_2010,blat.proc3829879.chain_2011,blat.proc3829879.chain_2012	5
scaffold_1	alt_acceptor	4239037	4239038	+	asmbl_1652,asmbl_1654	none	blat.proc3829871.chain_227,blat.proc3829871.chain_230	2	STRG.253.3,STRG.253.4,blat.proc3829871.chain_228,blat.proc3829871.chain_232	4
scaffold_21	alt_donor	7008735	7008736	-	asmbl_27801	none	blat.proc3829899.chain_1274	1	STRG.24222.1,STRG.24222.2,blat.proc3829899.chain_1273,blat.proc3829899.chain_1275	4
scaffold_20	alt_donor	9656219	9656220	+	asmbl_26035	none	STRG.23495.1	1	STRG.23495.2	1
scaffold_7	spliced_intron	1235897	1236328	+	asmbl_50473,asmbl_50478	none	STRG.8627.3,Trinity_GG_4740_c0_g1_i10,blat.proc3829875.chain_1053	3	STRG.8627.2,STRG.8627.5,STRG.8627.6,Trinity_GG_4740_c0_g1_i13,Trinity_GG_4740_c0_g1_i14,Trinity_GG_4740_c0_g1_i16,blat.proc3829875.chain_1042,blat.proc3829875.chain_1043,blat.proc3829875.chain_1044,blat.proc3829875.chain_1045,blat.proc3829875.chain_1048,blat.proc3829875.chain_1049	12
scaffold_14	spliced_intron	12752822	12753014	-	asmbl_13583	none	STRG.17572.1,blat.proc3829895.chain_2351	2	STRG.17572.2,STRG.17572.3,blat.proc3829895.chain_2350,blat.proc3829895.chain_2352,blat.proc3829895.chain_2354	5
scaffold_23	spliced_intron	1739076	1739233	+	asmbl_30658,asmbl_30659	none	blat.proc3829883.chain_2548,blat.proc3829883.chain_2549	2	blat.proc3829883.chain_2547	1
scaffold_9	ends_in_intron	4901554	4901554	+	asmbl_53954	none	blat.proc3829875.chain_3543	1	STRG.11054.1,STRG.11054.2,blat.proc3829875.chain_3544	3
scaffold_16	spliced_intron	14556348	14556439	-	asmbl_16644	none	STRG.19824.1	1	STRG.19824.2	1
scaffold_21	retained_intron	7367729	7367814	-	asmbl_27825,asmbl_27826	none	blat.proc3829899.chain_1314,blat.proc3829899.chain_1315	2	STRG.24244.1,STRG.24244.2,blat.proc3829899.chain_1316,blat.proc3829899.chain_1317	4
scaffold_4	ends_in_intron	16480756	16480756	-	asmbl_41930	none	Trinity_GG_19942_c0_g2_i2,blat.proc3829889.chain_1294	2	STRG.5226.1,STRG.5226.2,STRG.5226.3,blat.proc3829889.chain_1289,blat.proc3829889.chain_1292,blat.proc3829889.chain_1293	6
scaffold_1	spliced_intron	854980	855087	+	asmbl_1424,asmbl_1425,asmbl_1426	none	STRG.42.1,STRG.42.2,STRG.42.3	3	STRG.42.4,STRG.42.5	2
scaffold_2	spliced_intron	6350944	6351030	-	asmbl_23220	none	STRG.2000.1,Trinity_GG_18078_c0_g1_i1,blat.proc3829887.chain_1763	3	Trinity_GG_18078_c0_g1_i4,blat.proc3829887.chain_1764	2
scaffold_9	skipped_exon	14039157	14041365	+	asmbl_54497	none	STRG.11659.2,Trinity_GG_6520_c0_g1_i4,blat.proc3829877.chain_436	3	STRG.11659.1,Trinity_GG_6520_c0_g1_i3,blat.proc3829877.chain_438	3
scaffold_14	alt_acceptor	404542	404543	+	asmbl_11720,asmbl_11723,asmbl_11725,asmbl_11727,asmbl_11729,asmbl_11731	none	STRG.16722.1,STRG.16722.4,STRG.16722.6,blat.proc3829879.chain_1463,blat.proc3829879.chain_1467,blat.proc3829879.chain_1473	6	STRG.16722.2,STRG.16722.3,STRG.16722.5,STRG.16722.7,blat.proc3829879.chain_1464,blat.proc3829879.chain_1470	6
scaffold_2	retained_intron	15805763	15805856	-	asmbl_23673	none	Trinity_GG_18409_c0_g1_i2,blat.proc3829887.chain_2375	2	STRG.2525.1	1
scaffold_18	retained_exon	3916064	3916635	-	asmbl_19822	none	STRG.21192.2	1	STRG.21192.4	1
scaffold_20	alt_acceptor	1126365	1126366	-	asmbl_26476	none	STRG.22810.1	1	blat.proc3829897.chain_3595	1
scaffold_11	alt_donor	6714891	6714892	-	asmbl_6713,asmbl_6716	none	STRG.13703.4,Trinity_GG_24701_c0_g1_i5,blat.proc3829893.chain_2181	3	STRG.13703.1,STRG.13703.2,STRG.13703.5,STRG.13703.6,blat.proc3829893.chain_2180,blat.proc3829893.chain_2182	6
scaffold_20	starts_in_intron	8583982	8583982	-	asmbl_26922	none	blat.proc3829899.chain_322	1	STRG.23398.1,blat.proc3829899.chain_321,blat.proc3829899.chain_323	3
scaffold_15	alternate_exon	15442973	15443075	+	asmbl_14738,asmbl_14746	none	Trinity_GG_10389_c0_g1_i2,Trinity_GG_10389_c0_g1_i7,blat.proc3829879.chain_3560,blat.proc3829879.chain_3565	4	STRG.18933.1,STRG.18933.2,blat.proc3829879.chain_3564	3
scaffold_1	skipped_exon	18485288	18486788	-	asmbl_1106	none	STRG.1300.2,blat.proc3829887.chain_1210	2	blat.proc3829887.chain_1211,blat.proc3829887.chain_1212	2
scaffold_6	alt_donor	14622603	14622604	-	asmbl_48951	none	STRG.8218.5	1	blat.proc3829891.chain_467	1
scaffold_6	spliced_intron	2908621	2908725	+	asmbl_46733	none	blat.proc3829873.chain_3373	1	STRG.7289.2,blat.proc3829873.chain_3369	2
scaffold_27	starts_in_intron	9870380	9870380	+	asmbl_36488	none	Trinity_GG_16173_c0_g1_i1,blat.proc3829885.chain_2300	2	STRG.29194.1	1
scaffold_8	alt_donor	9947049	9947050	-	asmbl_53079	none	STRG.10238.1,blat.proc3829891.chain_2414	2	STRG.10238.3,Trinity_GG_22726_c0_g1_i1,blat.proc3829891.chain_2413	3
scaffold_13	spliced_intron	3529047	3529149	+	asmbl_10684,asmbl_10685,asmbl_10687	none	STRG.15655.1,STRG.15655.2,blat.proc3829879.chain_361,blat.proc3829879.chain_362,blat.proc3829879.chain_364	5	blat.proc3829879.chain_363	1
scaffold_16	spliced_intron	14510761	14510867	-	asmbl_16628,asmbl_16629,asmbl_16630,asmbl_16631	none	STRG.19819.1,blat.proc3829897.chain_770,blat.proc3829897.chain_771,blat.proc3829897.chain_772,blat.proc3829897.chain_774	5	Trinity_GG_28131_c0_g1_i2,blat.proc3829887.chain_3456,blat.proc3829897.chain_773	3
scaffold_7	skipped_exon	7184630	7186249	+	asmbl_50788	none	STRG.8964.2,blat.proc3829875.chain_1426	2	STRG.8964.1,STRG.8964.3,blat.proc3829875.chain_1425	3
scaffold_21	spliced_intron	8129161	8131427	-	asmbl_27910,asmbl_27912,asmbl_27914	none	STRG.24334.5,blat.proc3829899.chain_1383,blat.proc3829899.chain_1385,blat.proc3829899.chain_1387	4	STRG.24334.1,Trinity_GG_30568_c0_g1_i8,Trinity_GG_30568_c2_g1_i1,Trinity_GG_30568_c4_g1_i1,blat.proc3829899.chain_1386,blat.proc3829899.chain_1390,blat.proc3829899.chain_1392	7
scaffold_5	alt_donor	821102	821103	+	asmbl_43767	none	STRG.5632.3	1	STRG.5632.1,STRG.5632.2	2
scaffold_24	alternate_exon	162722	163275	-	asmbl_32692	none	Trinity_GG_31713_c0_g1_i1,blat.proc3829899.chain_3375	2	STRG.26299.1	1
scaffold_5	ends_in_intron	6587406	6587406	-	asmbl_45491	none	Trinity_GG_20417_c0_g1_i5,blat.proc3829889.chain_2133	2	blat.proc3829889.chain_2132,blat.proc3829889.chain_2135,blat.proc3829889.chain_2136	3
scaffold_20	retained_intron	4262299	4262354	-	asmbl_26649	none	STRG.23096.2	1	STRG.23096.1	1
scaffold_1	alt_acceptor	3645911	3645912	+	asmbl_1620	none	STRG.228.2,blat.proc3829871.chain_238	2	STRG.228.1,blat.proc3829871.chain_239	2
scaffold_6	skipped_exon	3320407	3320929	-	asmbl_48193	none	STRG.7329.2,blat.proc3829889.chain_3342	2	STRG.7329.1,STRG.7329.3,blat.proc3829889.chain_3341	3
scaffold_12	alt_donor	12288995	12288996	-	asmbl_7989	none	STRG.15114.4	1	STRG.15114.5	1
scaffold_6	alt_donor	12002378	12002379	+	asmbl_47304	none	STRG.7963.3	1	STRG.7963.1,STRG.7963.2	2
scaffold_3	retained_exon	17083237	17083321	-	asmbl_39483	none	STRG.3945.1	1	STRG.3945.2	1
scaffold_5	starts_in_intron	5753862	5753862	+	asmbl_44035	none	Trinity_GG_3278_c0_g1_i2	1	STRG.5987.1,STRG.5987.2,blat.proc3829873.chain_2148	3
scaffold_28	starts_in_intron	3905992	3905992	+	asmbl_38195	none	Trinity_GG_16382_c0_g1_i1,blat.proc3829885.chain_2660	2	STRG.29569.1,blat.proc3829885.chain_2659	2
scaffold_8	alt_acceptor	18247162	18247163	+	asmbl_52536	none	Trinity_GG_5946_c0_g1_i2,blat.proc3829875.chain_3209	2	STRG.10722.1,Trinity_GG_5946_c0_g1_i1,blat.proc3829875.chain_3210	3
scaffold_6	spliced_intron	10231662	10231807	+	asmbl_47212	none	blat.proc3829875.chain_249	1	STRG.7856.1,blat.proc3829875.chain_248	2
scaffold_22	starts_in_intron	4579096	4579096	+	asmbl_29318	none	blat.proc3829883.chain_1898	1	STRG.24871.1,blat.proc3829883.chain_1895,blat.proc3829883.chain_1897,blat.proc3829883.chain_1899	4
scaffold_15	retained_intron	15409993	15410182	+	asmbl_14720	none	blat.proc3829879.chain_3516	1	STRG.18921.3,STRG.18921.9,blat.proc3829879.chain_3517	3
scaffold_25	retained_intron	3631412	3631606	+	asmbl_33436	none	blat.proc3829885.chain_343	1	STRG.27294.1,STRG.27294.2,blat.proc3829885.chain_341,blat.proc3829885.chain_342	4
scaffold_7	alt_donor	5837176	5837177	+	asmbl_50709	none	STRG.8881.2	1	STRG.8881.1	1
scaffold_10	alternate_exon	7671862	7677632	+	asmbl_4573	none	STRG.12547.2,Trinity_GG_6909_c0_g1_i1,Trinity_GG_6909_c1_g1_i1,blat.proc3829877.chain_1107,blat.proc3829877.chain_1111	5	STRG.12547.1	1
scaffold_18	spliced_intron	11329326	11329551	+	asmbl_20962,asmbl_20963,asmbl_20965,asmbl_20966	none	STRG.21666.1,STRG.21666.2,blat.proc3829881.chain_2648,blat.proc3829881.chain_2651,blat.proc3829881.chain_2655	5	Trinity_GG_11992_c0_g1_i11,blat.proc3829881.chain_2656	2
scaffold_10	starts_in_intron	5855837	5855837	-	asmbl_3316	none	blat.proc3829893.chain_869	1	STRG.12401.1,STRG.12401.2,STRG.12401.3,blat.proc3829893.chain_870,blat.proc3829893.chain_872,blat.proc3829893.chain_873	6
scaffold_9	alt_acceptor	15207764	15207765	-	asmbl_55475,asmbl_55476	none	STRG.11719.1,STRG.11719.2,blat.proc3829893.chain_58,blat.proc3829893.chain_59	4	STRG.11719.3	1
scaffold_21	spliced_intron	3175043	3175199	+	asmbl_28479,asmbl_28480,asmbl_28481,asmbl_28482,asmbl_28489	none	STRG.23945.1,STRG.23945.2,STRG.23945.3,STRG.23945.6,blat.proc3829883.chain_1058,blat.proc3829883.chain_1060	6	blat.proc3829883.chain_1059	1
scaffold_2	skipped_exon	10135861	10137642	+	asmbl_24735	none	STRG.2203.2,blat.proc3829871.chain_2325	2	STRG.2203.1,STRG.2203.3,blat.proc3829871.chain_2326,blat.proc3829871.chain_2327	4
scaffold_4	alternate_exon	13762796	13763615	-	asmbl_41748,asmbl_41750	none	STRG.4997.1,blat.proc3829889.chain_1049,blat.proc3829889.chain_1050	3	STRG.4997.3	1
scaffold_2	alt_acceptor	2845830	2845831	-	asmbl_22953	none	STRG.1725.2	1	STRG.1725.1,blat.proc3829887.chain_1506	2
scaffold_1	retained_intron	15888312	15889037	+	asmbl_2436	none	STRG.1117.2,blat.proc3829871.chain_1169	2	STRG.1117.1,Trinity_GG_643_c0_g1_i1,blat.proc3829871.chain_1170	3
scaffold_26	retained_intron	9315311	9315414	+	asmbl_35737,asmbl_35738,asmbl_35740	none	blat.proc3829885.chain_1520	1	STRG.28479.1,STRG.28479.2,STRG.28479.3,blat.proc3829885.chain_1519	4
scaffold_26	alternate_exon	9603990	9607416	+	asmbl_35769	none	STRG.28493.3	1	blat.proc3829885.chain_1428	1
scaffold_15	starts_in_intron	6005	6005	-	asmbl_14914	none	blat.proc3829895.chain_2568	1	STRG.17846.1,blat.proc3829895.chain_2567	2
scaffold_26	alternate_exon	9841947	9842320	-	asmbl_35067,asmbl_35068	none	Trinity_GG_32930_c0_g1_i2,blat.proc3829901.chain_1620,blat.proc3829901.chain_1621	3	STRG.28525.2	1
scaffold_16	spliced_intron	3821260	3821374	-	asmbl_16175	none	Trinity_GG_27778_c0_g1_i1,blat.proc3829897.chain_199	2	STRG.19175.1,Trinity_GG_27778_c0_g1_i2,blat.proc3829897.chain_198	3
scaffold_21	retained_intron	495998	496253	-	asmbl_27358	none	Trinity_GG_30234_c0_g1_i3,blat.proc3829899.chain_799	2	STRG.23730.1,Trinity_GG_30234_c0_g1_i2,blat.proc3829899.chain_800	3
scaffold_27	retained_intron	2881786	2881921	+	asmbl_36105	none	blat.proc3829885.chain_1819	1	STRG.28753.1,STRG.28753.2,STRG.28753.4,blat.proc3829885.chain_1817,blat.proc3829885.chain_1820,blat.proc3829885.chain_1822,blat.proc3829885.chain_1823	7
scaffold_14	alternate_exon	210780	210874	-	asmbl_12779	none	STRG.16702.3,Trinity_GG_26362_c0_g1_i5,blat.proc3829895.chain_1405	3	Trinity_GG_26362_c0_g1_i2,blat.proc3829895.chain_1402	2
scaffold_3	alt_donor	18937824	18937825	+	asmbl_40706,asmbl_40709	none	STRG.4063.2,STRG.4063.4	2	STRG.4063.1,STRG.4063.3	2
scaffold_17	starts_in_intron	7849258	7849258	+	asmbl_18056	none	STRG.20399.3	1	STRG.20399.1,blat.proc3829881.chain_1175	2
scaffold_16	alt_acceptor	790985	790986	+	asmbl_16836,asmbl_16837,asmbl_16840	none	STRG.19046.2,STRG.19046.3,blat.proc3829879.chain_3588,blat.proc3829879.chain_3593	4	STRG.19046.1,blat.proc3829879.chain_3591	2
scaffold_8	retained_exon	12320882	12321005	-	asmbl_53187,asmbl_53193	none	STRG.10399.1,blat.proc3829891.chain_2530,blat.proc3829891.chain_2531	3	STRG.10399.2,blat.proc3829891.chain_2529	2
scaffold_14	alt_acceptor	733742	733743	-	asmbl_12828	none	STRG.16734.2	1	STRG.16734.1,blat.proc3829895.chain_1451	2
scaffold_19	alt_acceptor	728538	728539	+	asmbl_22004,asmbl_22005	none	STRG.21851.3,STRG.21851.4,blat.proc3829881.chain_2836	3	STRG.21851.1,STRG.21851.2	2
scaffold_8	starts_in_intron	4186707	4186707	+	asmbl_51804	none	blat.proc3829875.chain_2407	1	STRG.9886.1,blat.proc3829875.chain_2406,blat.proc3829875.chain_2408,blat.proc3829875.chain_2409	4
scaffold_14	alt_acceptor	15944300	15944301	+	asmbl_12631	none	STRG.17823.1	1	STRG.17823.2	1
scaffold_1	alt_donor	11269947	11269948	+	asmbl_2080	none	STRG.744.1,Trinity_GG_459_c0_g1_i1,blat.proc3829871.chain_794	3	STRG.744.2	1
scaffold_1	ends_in_intron	922134	922134	+	asmbl_1438	none	Trinity_GG_8_c0_g1_i1,blat.proc3829871.chain_14	2	STRG.48.1,STRG.48.2,Trinity_GG_8_c0_g1_i3,Trinity_GG_8_c0_g1_i5,blat.proc3829871.chain_17,blat.proc3829871.chain_18	6
scaffold_1	alt_donor	16839892	16839893	-	asmbl_1019	none	STRG.1181.1,blat.proc3829887.chain_1030	2	STRG.1181.2	1
scaffold_6	ends_in_intron	13183444	13183444	-	asmbl_48833	none	blat.proc3829891.chain_392	1	STRG.8071.1,blat.proc3829891.chain_389,blat.proc3829891.chain_391	3
scaffold_5	starts_in_intron	18255009	18255009	+	asmbl_44889	none	Trinity_GG_3839_c0_g1_i4,blat.proc3829873.chain_3129	2	STRG.6952.1,Trinity_GG_3839_c0_g1_i2,blat.proc3829873.chain_3127	3
scaffold_1	retained_intron	12336858	12337333	-	asmbl_712	none	blat.proc3829887.chain_740	1	STRG.843.1,STRG.843.2,blat.proc3829887.chain_734,blat.proc3829887.chain_735,blat.proc3829887.chain_736,blat.proc3829887.chain_737,blat.proc3829887.chain_738,blat.proc3829887.chain_739,blat.proc3829887.chain_741,blat.proc3829887.chain_742,blat.proc3829887.chain_743,blat.proc3829887.chain_744,blat.proc3829887.chain_745,blat.proc3829887.chain_746	14
scaffold_8	spliced_intron	1801739	1801810	-	asmbl_52699	none	STRG.9770.2	1	blat.proc3829875.chain_2240	1
scaffold_24	spliced_intron	10782528	10782651	-	asmbl_33210,asmbl_33212,asmbl_33214	none	STRG.27021.1,blat.proc3829901.chain_293,blat.proc3829901.chain_294,blat.proc3829901.chain_296	4	blat.proc3829901.chain_292	1
scaffold_11	spliced_intron	13256356	13256573	+	asmbl_6017,asmbl_6018,asmbl_6020	none	STRG.14184.1,STRG.14184.2,STRG.14184.3,blat.proc3829877.chain_2651,blat.proc3829877.chain_2654	5	blat.proc3829877.chain_2653	1
scaffold_11	skipped_exon	9149571	9150033	+	asmbl_5834	none	STRG.13940.1,blat.proc3829877.chain_2458	2	STRG.13940.2,blat.proc3829877.chain_2459	2
scaffold_10	spliced_intron	2669269	2669443	+	asmbl_4266	none	STRG.12074.1,blat.proc3829877.chain_804	2	blat.proc3829877.chain_805	1
scaffold_1	retained_exon	3287205	3287337	+	asmbl_1586	none	STRG.204.3,blat.proc3829871.chain_253	2	STRG.204.2	1
scaffold_7	spliced_intron	5928824	5929865	+	asmbl_50715	none	blat.proc3829875.chain_1202	1	STRG.8891.1,Trinity_GG_4833_c0_g1_i4,blat.proc3829875.chain_1204	3
scaffold_7	retained_intron	2734406	2734533	+	asmbl_50542	none	blat.proc3829875.chain_1115	1	STRG.8692.1,blat.proc3829875.chain_1116	2
scaffold_2	starts_in_intron	15652382	15652382	+	asmbl_25089	none	blat.proc3829871.chain_2707	1	STRG.2516.1,blat.proc3829871.chain_2708	2
scaffold_4	alternate_exon	4096236	4096420	+	asmbl_42551	none	blat.proc3829873.chain_639	1	blat.proc3829873.chain_634	1
scaffold_24	alt_acceptor	10269351	10269352	+	asmbl_32551	none	STRG.26966.1,Trinity_GG_14851_c0_g1_i2,blat.proc3829883.chain_3750	3	STRG.26966.2,Trinity_GG_14851_c0_g1_i1,blat.proc3829885.chain_1	3
scaffold_11	alternate_exon	576738	576787	+	asmbl_5250	none	STRG.13259.2	1	STRG.13259.1	1
scaffold_17	spliced_intron	3998088	3998274	+	asmbl_17882,asmbl_17885	none	STRG.20145.2,blat.proc3829881.chain_992	2	STRG.20145.1,STRG.20145.3,STRG.20145.4,blat.proc3829881.chain_988,blat.proc3829881.chain_989,blat.proc3829881.chain_990,blat.proc3829881.chain_991	7
scaffold_11	ends_in_intron	8430883	8430883	+	asmbl_5736	none	blat.proc3829877.chain_2332	1	STRG.13849.1,STRG.13849.2,Trinity_GG_7631_c0_g1_i3,Trinity_GG_7631_c0_g2_i1,blat.proc3829877.chain_2325,blat.proc3829877.chain_2331	6
scaffold_17	retained_intron	10048773	10050113	+	asmbl_18285	none	STRG.20609.3,Trinity_GG_11293_c0_g1_i1,Trinity_GG_11293_c1_g1_i1,blat.proc3829881.chain_1433,blat.proc3829881.chain_1434	5	STRG.20609.2,blat.proc3829881.chain_1432	2
scaffold_24	spliced_intron	6225905	6226490	-	asmbl_32933,asmbl_32934	none	STRG.26664.1,Trinity_GG_31899_c0_g1_i6,blat.proc3829899.chain_3686,blat.proc3829899.chain_3688	4	STRG.26664.2,STRG.26664.3,blat.proc3829899.chain_3687,blat.proc3829899.chain_3690,blat.proc3829899.chain_3693,blat.proc3829899.chain_3695,blat.proc3829899.chain_3696	7
scaffold_13	alt_donor	9242950	9242951	+	asmbl_11168	none	STRG.16173.1,blat.proc3829879.chain_844	2	STRG.16173.2,STRG.16173.3,blat.proc3829879.chain_843	3
scaffold_14	starts_in_intron	12504473	12504473	-	asmbl_13555	none	blat.proc3829895.chain_2268	1	STRG.17554.1,blat.proc3829895.chain_2269	2
scaffold_16	alternate_exon	6147933	6148262	+	asmbl_17074	none	blat.proc3829881.chain_212	1	STRG.19342.2,STRG.19342.3,STRG.19342.4,blat.proc3829881.chain_210	4
scaffold_20	starts_in_intron	11101637	11101637	+	asmbl_26166	none	Trinity_GG_13072_c0_g1_i1,blat.proc3829883.chain_756	2	STRG.23614.1,blat.proc3829883.chain_757,blat.proc3829883.chain_758	3
scaffold_11	spliced_intron	7924769	7925337	+	asmbl_5663	none	STRG.13793.3,Trinity_GG_7594_c0_g1_i4,blat.proc3829877.chain_2266	3	STRG.13793.2,Trinity_GG_7594_c0_g1_i2,blat.proc3829877.chain_2264	3
scaffold_1	alternate_exon	9961982	9962174	-	asmbl_579	none	blat.proc3829887.chain_590	1	STRG.662.1,STRG.662.2,blat.proc3829887.chain_589,blat.proc3829887.chain_591	4
scaffold_5	retained_intron	15463089	15463201	-	asmbl_46057,asmbl_46059	none	STRG.6726.2,blat.proc3829889.chain_2790,blat.proc3829889.chain_2791	3	STRG.6726.1	1
scaffold_11	alt_acceptor	9950772	9950773	-	asmbl_6948	none	STRG.14010.1,blat.proc3829893.chain_2418	2	STRG.14010.2	1
scaffold_114	retained_exon	2143	2244	+	asmbl_7378	none	STRG.30123.1,blat.proc3829885.chain_3192	2	blat.proc3829885.chain_3193	1
scaffold_18	retained_exon	3915822	3916386	-	asmbl_19821	none	STRG.21192.5	1	blat.proc3829897.chain_2089	1
scaffold_7	alt_acceptor	280387	280388	+	asmbl_50427,asmbl_50429,asmbl_50430	none	STRG.8593.2,Trinity_GG_4731_c0_g1_i3,Trinity_GG_4731_c0_g1_i5,blat.proc3829875.chain_1013	4	STRG.8593.1	1
scaffold_17	spliced_intron	3142038	3142233	-	asmbl_18846	none	STRG.20084.1,blat.proc3829897.chain_996	2	STRG.20084.2,Trinity_GG_28258_c0_g1_i4,blat.proc3829897.chain_998	3
scaffold_20	alt_acceptor	7104772	7104773	-	asmbl_26797	none	STRG.23268.3,Trinity_GG_29954_c0_g2_i1,blat.proc3829899.chain_226,blat.proc3829899.chain_229	4	STRG.23268.2,blat.proc3829899.chain_228	2
scaffold_1	starts_in_intron	6012908	6012908	+	asmbl_1808	none	blat.proc3829871.chain_471	1	STRG.402.1,blat.proc3829871.chain_470	2
scaffold_2	retained_exon	17614275	17615047	+	asmbl_25219	none	STRG.2650.1,Trinity_GG_1507_c1_g1_i1,blat.proc3829871.chain_2855,blat.proc3829871.chain_2858	4	STRG.2650.3	1
scaffold_21	alternate_exon	1758526	1758796	-	asmbl_27446	none	STRG.23809.1,blat.proc3829899.chain_888	2	blat.proc3829899.chain_886	1
scaffold_23	retained_intron	6632661	6632755	+	asmbl_30934,asmbl_30935	none	STRG.25985.1,blat.proc3829883.chain_2811	2	STRG.25985.2,blat.proc3829883.chain_2813,blat.proc3829883.chain_2814,blat.proc3829883.chain_2815,blat.proc3829883.chain_2816,blat.proc3829883.chain_2817	6
scaffold_10	alt_acceptor	8903911	8903912	-	asmbl_3548	none	STRG.12625.4,blat.proc3829893.chain_1069	2	STRG.12625.5,blat.proc3829885.chain_3307,blat.proc3829893.chain_1075	3
scaffold_5	spliced_intron	8539438	8539884	-	asmbl_45601	none	STRG.6191.4,blat.proc3829889.chain_2250	2	blat.proc3829889.chain_2247,blat.proc3829889.chain_2249	2
scaffold_13	spliced_intron	7216462	7216557	+	asmbl_11007,asmbl_11008,asmbl_11009,asmbl_11011,asmbl_11012,asmbl_11013	none	STRG.16002.1,blat.proc3829879.chain_693,blat.proc3829879.chain_695,blat.proc3829879.chain_696,blat.proc3829879.chain_699,blat.proc3829879.chain_700,blat.proc3829879.chain_701	7	STRG.16002.2,blat.proc3829879.chain_698	2
scaffold_7	starts_in_intron	13958118	13958118	+	asmbl_51277	none	blat.proc3829875.chain_1954	1	STRG.9485.1,STRG.9485.2,STRG.9485.3,blat.proc3829875.chain_1953,blat.proc3829875.chain_1955	5
scaffold_22	starts_in_intron	11642249	11642249	-	asmbl_30463	none	Trinity_GG_31236_c0_g1_i2,blat.proc3829899.chain_2535	2	STRG.25494.1,Trinity_GG_31236_c0_g1_i1,blat.proc3829899.chain_2536	3
scaffold_5	retained_intron	19031567	19031663	-	asmbl_46264	none	STRG.7018.6,blat.proc3829889.chain_3007	2	STRG.7018.4,blat.proc3829889.chain_3003,blat.proc3829889.chain_3006	3
scaffold_25	spliced_intron	4810572	4810690	+	asmbl_33529	none	STRG.27400.1,Trinity_GG_15078_c0_g1_i6,blat.proc3829885.chain_375	3	blat.proc3829885.chain_374	1
scaffold_322	alt_acceptor	6574	6575	-	asmbl_40917	none	STRG.30256.4	1	STRG.30256.1,STRG.30256.2,STRG.30256.3	3
scaffold_10	alt_donor	10640623	10640624	-	asmbl_3657	none	STRG.12752.1	1	STRG.12752.2	1
scaffold_21	alternate_exon	823657	834853	+	asmbl_28331	none	STRG.23762.2,blat.proc3829883.chain_913	2	STRG.23762.3	1
scaffold_1	alt_donor	18485990	18485991	-	asmbl_1110	none	blat.proc3829887.chain_1211	1	blat.proc3829887.chain_1212	1
scaffold_11	spliced_intron	3140143	3140263	-	asmbl_6508	none	Trinity_GG_24520_c1_g1_i1,blat.proc3829893.chain_1874	2	Trinity_GG_24520_c1_g1_i2,blat.proc3829893.chain_1875	2
scaffold_7	alt_acceptor	8326694	8326695	-	asmbl_49821	none	STRG.9060.2	1	STRG.9060.1,blat.proc3829891.chain_1315	2
scaffold_10	spliced_intron	17328288	17328429	+	asmbl_5039	none	STRG.13171.2	1	STRG.13171.1	1
scaffold_13	alt_acceptor	12253533	12253534	+	asmbl_11333	none	blat.proc3829879.chain_1005	1	STRG.16339.2,STRG.16339.3,Trinity_GG_8947_c0_g1_i1,blat.proc3829879.chain_1006	4
scaffold_10	alt_donor	3928120	3928121	-	asmbl_3153,asmbl_3154,asmbl_3155,asmbl_3159	none	STRG.12230.1,STRG.12230.3,STRG.12230.4,blat.proc3829893.chain_691,blat.proc3829893.chain_693,blat.proc3829893.chain_694,blat.proc3829893.chain_695	7	blat.proc3829893.chain_690	1
scaffold_13	retained_intron	5459898	5460075	+	asmbl_10833,asmbl_10834	none	blat.proc3829879.chain_519,blat.proc3829879.chain_521	2	STRG.15828.1,STRG.15828.2,blat.proc3829879.chain_518,blat.proc3829879.chain_520	4
scaffold_3	starts_in_intron	8254403	8254403	+	asmbl_40167	none	Trinity_GG_1923_c0_g1_i1,blat.proc3829871.chain_3569	2	STRG.3399.1,Trinity_GG_1923_c0_g1_i2,blat.proc3829871.chain_3568	3
scaffold_19	retained_intron	11482922	11483072	-	asmbl_21612	none	Trinity_GG_29530_c0_g1_i9,blat.proc3829897.chain_3188,blat.proc3829897.chain_3189	3	STRG.22477.1,STRG.22477.3,blat.proc3829897.chain_3182,blat.proc3829897.chain_3184,blat.proc3829897.chain_3187,blat.proc3829897.chain_3191,blat.proc3829897.chain_3192	7
scaffold_18	spliced_intron	8425824	8425992	-	asmbl_20045	none	STRG.21509.2,Trinity_GG_29031_c0_g1_i2,blat.proc3829897.chain_2336	3	STRG.21509.1,Trinity_GG_29031_c0_g1_i1,blat.proc3829897.chain_2335	3
scaffold_1	retained_intron	854276	854519	+	asmbl_1423,asmbl_1426	none	STRG.42.1,STRG.42.4	2	STRG.42.2,STRG.42.3,STRG.42.5,STRG.42.6	4
scaffold_2	retained_intron	7876589	7876880	+	asmbl_24620	none	Trinity_GG_1183_c0_g1_i7,blat.proc3829871.chain_2184	2	STRG.2087.1,Trinity_GG_1183_c0_g1_i10,Trinity_GG_1183_c0_g1_i14,Trinity_GG_1183_c0_g1_i16,Trinity_GG_1183_c0_g1_i18,Trinity_GG_1183_c0_g1_i2,blat.proc3829871.chain_2179,blat.proc3829871.chain_2180,blat.proc3829871.chain_2181,blat.proc3829871.chain_2182,blat.proc3829871.chain_2185	11
scaffold_6	spliced_intron	2487326	2487373	+	asmbl_46701,asmbl_46702	none	blat.proc3829873.chain_3414,blat.proc3829873.chain_3416,blat.proc3829873.chain_3417	3	STRG.7239.1,STRG.7239.3	2
scaffold_12	alt_acceptor	6420482	6420483	+	asmbl_8639,asmbl_8640,asmbl_8641,asmbl_8642,asmbl_8643,asmbl_8644,asmbl_8645	none	STRG.14730.1,STRG.14730.2,STRG.14730.3,STRG.14730.4,Trinity_GG_8129_c0_g1_i5,blat.proc3829877.chain_3201,blat.proc3829877.chain_3203,blat.proc3829877.chain_3204,blat.proc3829877.chain_3205,blat.proc3829877.chain_3206	10	blat.proc3829877.chain_3202	1
scaffold_15	ends_in_intron	15158596	15158596	+	asmbl_14665,asmbl_14666	none	blat.proc3829879.chain_3400,blat.proc3829879.chain_3401	2	STRG.18895.5	1
scaffold_13	starts_in_intron	16190469	16190469	-	asmbl_10250	none	blat.proc3829895.chain_1286	1	STRG.16653.1	1
scaffold_16	spliced_intron	14663726	14663814	+	asmbl_17503	none	STRG.19850.2,Trinity_GG_10852_c1_g1_i2,blat.proc3829881.chain_665	3	STRG.19850.1,Trinity_GG_10852_c1_g1_i1,blat.proc3829881.chain_666	3
scaffold_1	alt_acceptor	7370071	7370072	-	asmbl_443	none	STRG.517.3	1	STRG.517.2,STRG.517.5	2
scaffold_2	alt_acceptor	7881154	7881155	+	asmbl_24624	none	Trinity_GG_1183_c0_g1_i16,blat.proc3829871.chain_2182	2	STRG.2088.1,Trinity_GG_1183_c0_g1_i10,Trinity_GG_1183_c0_g1_i4,blat.proc3829871.chain_2178,blat.proc3829871.chain_2185	5
scaffold_18	alt_donor	7554244	7554245	-	asmbl_19990,asmbl_19993	none	STRG.21448.1,STRG.21448.2,blat.proc3829897.chain_2296	3	STRG.21448.3	1
scaffold_8	alt_donor	6019010	6019011	+	asmbl_51908	none	blat.proc3829875.chain_2560	1	blat.proc3829875.chain_2559	1
scaffold_26	retained_intron	4679112	4679225	-	asmbl_34858	none	STRG.28174.2	1	STRG.28174.1	1
scaffold_27	alternate_exon	934982	935128	-	asmbl_36671,asmbl_36672	none	STRG.28569.2,STRG.28569.3,blat.proc3829901.chain_1747	3	STRG.28569.1,blat.proc3829901.chain_1746,blat.proc3829901.chain_1748	3
scaffold_3	starts_in_intron	8220321	8220321	-	asmbl_38983	none	STRG.3396.1,blat.proc3829887.chain_3072	2	STRG.3396.2	1
scaffold_3	alternate_exon	12062509	12062660	+	asmbl_40348	none	STRG.3627.3	1	STRG.3627.1,STRG.3627.2,Trinity_GG_2023_c0_g1_i1,blat.proc3829873.chain_3	4
scaffold_5	skipped_exon	5738210	5739761	+	asmbl_44029	none	blat.proc3829873.chain_2048	1	STRG.5984.4	1
scaffold_8	retained_intron	6028914	6029014	+	asmbl_51911	none	blat.proc3829875.chain_2552	1	Trinity_GG_5590_c1_g1_i6,blat.proc3829875.chain_2551,blat.proc3829875.chain_2553,blat.proc3829875.chain_2554,blat.proc3829875.chain_2555	5
scaffold_10	alt_acceptor	925748	925749	-	asmbl_2926,asmbl_2929	none	STRG.11959.1,Trinity_GG_23671_c0_g1_i2,blat.proc3829893.chain_421	3	STRG.11959.2	1
scaffold_5	spliced_intron	9086017	9086102	+	asmbl_44259,asmbl_44262,asmbl_44264,asmbl_44265,asmbl_44266,asmbl_44267,asmbl_44268,asmbl_44269,asmbl_44270,asmbl_44271	none	STRG.6237.1,STRG.6237.2,STRG.6237.3,STRG.6237.4,STRG.6237.5,blat.proc3829873.chain_2418,blat.proc3829873.chain_2419,blat.proc3829873.chain_2422,blat.proc3829873.chain_2423,blat.proc3829873.chain_2424,blat.proc3829873.chain_2426	11	blat.proc3829873.chain_2421	1
scaffold_17	starts_in_intron	2358091	2358091	+	asmbl_17773	none	blat.proc3829881.chain_854	1	STRG.20017.1,STRG.20017.2,STRG.20017.7,blat.proc3829881.chain_852,blat.proc3829881.chain_853	5
scaffold_20	alt_donor	5924087	5924088	-	asmbl_26708,asmbl_26711	none	STRG.23184.3,blat.proc3829899.chain_144,blat.proc3829899.chain_149	3	STRG.23184.2,blat.proc3829899.chain_145,blat.proc3829899.chain_148,blat.proc3829899.chain_150	4
scaffold_8	starts_in_intron	17679696	17679696	-	asmbl_53494	none	Trinity_GG_22921_c0_g1_i5,blat.proc3829891.chain_2787	2	STRG.10682.1,STRG.10682.2,Trinity_GG_22921_c0_g1_i1,Trinity_GG_22921_c0_g1_i6,blat.proc3829891.chain_2785,blat.proc3829891.chain_2786	6
scaffold_4	retained_exon	7154530	7154765	+	asmbl_42802,asmbl_42803,asmbl_42804,asmbl_42807	none	STRG.4558.1,STRG.4558.2,STRG.4558.3,STRG.4558.4,blat.proc3829873.chain_884	5	STRG.4558.5,blat.proc3829873.chain_883	2
scaffold_5	alternate_exon	3088691	3090502	+	asmbl_43874	none	STRG.5800.2,blat.proc3829873.chain_1980	2	STRG.5800.1	1
scaffold_28	alt_acceptor	753817	753818	-	asmbl_37256	none	STRG.29273.1	1	STRG.29273.2,STRG.29273.3,STRG.29273.4,blat.proc3829901.chain_2376	4
scaffold_16	spliced_intron	7910028	7910131	+	asmbl_17158	none	STRG.19432.1,Trinity_GG_10619_c0_g1_i2,blat.proc3829881.chain_261	3	Trinity_GG_10619_c0_g1_i1,blat.proc3829881.chain_260,blat.proc3829881.chain_262	3
scaffold_6	retained_intron	17522323	17523320	+	asmbl_47699	none	STRG.8451.2,Trinity_GG_4648_c1_g1_i1,Trinity_GG_4648_c1_g1_i4,blat.proc3829875.chain_841,blat.proc3829875.chain_842	5	STRG.8451.1,STRG.8451.4,blat.proc3829875.chain_843	3
scaffold_14	retained_intron	2600144	2600258	-	asmbl_12947	none	STRG.16853.1,Trinity_GG_26455_c0_g1_i1,blat.proc3829895.chain_1558	3	STRG.16853.2	1
scaffold_8	ends_in_intron	4961685	4961685	-	asmbl_52812	none	Trinity_GG_22561_c2_g1_i1,blat.proc3829891.chain_2109	2	STRG.9963.1,blat.proc3829891.chain_2104,blat.proc3829891.chain_2105,blat.proc3829891.chain_2107	4
scaffold_3	alternate_exon	8193366	8193936	-	asmbl_38977	none	Trinity_GG_18833_c4_g3_i1,blat.proc3829887.chain_3146	2	blat.proc3829887.chain_3145	1
scaffold_16	spliced_intron	14662578	14662669	-	asmbl_16674,asmbl_16676	none	STRG.19849.1,STRG.19849.2,blat.proc3829897.chain_809	3	blat.proc3829897.chain_810	1
scaffold_5	alternate_exon	5051753	5051848	+	asmbl_44001	none	Trinity_GG_3276_c0_g2_i4,blat.proc3829873.chain_2142	2	STRG.5949.2,STRG.5949.3,STRG.5949.4,blat.proc3829873.chain_2144	4
scaffold_19	alt_acceptor	6677710	6677711	-	asmbl_21429	none	STRG.22172.2	1	STRG.22172.1,blat.proc3829897.chain_2921,blat.proc3829897.chain_2922	3
scaffold_16	starts_in_intron	11953346	11953346	+	asmbl_17423	none	blat.proc3829881.chain_580	1	STRG.19712.1,STRG.19712.3,Trinity_GG_10805_c0_g1_i3,Trinity_GG_10805_c0_g1_i4,blat.proc3829881.chain_577,blat.proc3829881.chain_578	6
scaffold_14	alternate_exon	13221095	13221285	+	asmbl_12449,asmbl_12451	none	STRG.17600.1,STRG.17600.2,blat.proc3829879.chain_2204	3	STRG.17600.5	1
scaffold_6	spliced_intron	14639697	14639780	-	asmbl_48956	none	STRG.8224.1,blat.proc3829891.chain_505	2	blat.proc3829891.chain_504	1
scaffold_20	ends_in_intron	4386121	4386121	+	asmbl_25740	none	blat.proc3829883.chain_241	1	STRG.23104.1,STRG.23104.2,blat.proc3829883.chain_240,blat.proc3829883.chain_242	4
scaffold_19	alternate_exon	5345716	5350532	-	asmbl_21357,asmbl_21358	none	STRG.22090.2,STRG.22090.3,blat.proc3829897.chain_2874,blat.proc3829897.chain_2876,blat.proc3829897.chain_2877,blat.proc3829897.chain_2880	6	STRG.22090.4	1
scaffold_13	starts_in_intron	6984855	6984855	+	asmbl_10989	none	STRG.15999.4	1	STRG.15999.3	1
scaffold_5	alt_acceptor	939477	939478	-	asmbl_45187	none	STRG.5635.2	1	STRG.5635.3	1
scaffold_2	spliced_intron	7782690	7783100	+	asmbl_24606,asmbl_24607,asmbl_24608,asmbl_24613	none	STRG.2076.2,STRG.2076.5,STRG.2076.6,blat.proc3829871.chain_2205,blat.proc3829871.chain_2208,blat.proc3829871.chain_2211	6	STRG.2076.1,Trinity_GG_1189_c0_g1_i13,blat.proc3829871.chain_2203,blat.proc3829871.chain_2210	4
scaffold_10	retained_intron	10283622	10283975	-	asmbl_3616	none	STRG.12709.3,blat.proc3829893.chain_1236	2	blat.proc3829893.chain_1238	1
scaffold_21	alt_acceptor	1151178	1151179	+	asmbl_28352	none	STRG.23774.3	1	STRG.23774.2,Trinity_GG_13181_c0_g1_i2,blat.proc3829883.chain_940	3
scaffold_3	alt_donor	16176419	16176420	-	asmbl_39438	none	STRG.3898.2	1	STRG.3898.1,blat.proc3829887.chain_3710	2
scaffold_16	starts_in_intron	436429	436429	-	asmbl_16045,asmbl_16047,asmbl_16048,asmbl_16050	none	blat.proc3829897.chain_18,blat.proc3829897.chain_20,blat.proc3829897.chain_21,blat.proc3829897.chain_23	4	STRG.19039.1	1
scaffold_14	retained_exon	6437202	6437324	-	asmbl_13113	none	STRG.17076.2,blat.proc3829895.chain_1778	2	STRG.17076.1,blat.proc3829895.chain_1779	2
scaffold_2	starts_in_intron	13052015	13052015	+	asmbl_24842	none	Trinity_GG_1307_c0_g1_i1,blat.proc3829871.chain_2430	2	STRG.2328.1,STRG.2328.2,blat.proc3829871.chain_2428,blat.proc3829871.chain_2429	4
scaffold_14	spliced_intron	7216942	7217143	+	asmbl_12112,asmbl_12114	none	STRG.17138.1,Trinity_GG_9432_c0_g1_i1,blat.proc3829879.chain_1870,blat.proc3829879.chain_1872	4	Trinity_GG_9432_c0_g1_i2,blat.proc3829879.chain_1871	2
scaffold_15	retained_intron	12742614	12743313	+	asmbl_14546,asmbl_14547	none	STRG.18731.5,blat.proc3829879.chain_3351	2	STRG.18731.2,STRG.18731.3,blat.proc3829879.chain_3353	3
scaffold_8	retained_exon	16656666	16656851	+	asmbl_52453	none	STRG.10631.2,Trinity_GG_5908_c0_g1_i2,blat.proc3829875.chain_3133	3	STRG.10631.1,Trinity_GG_5908_c0_g1_i1,blat.proc3829875.chain_3134	3
scaffold_14	alt_acceptor	2840988	2840989	+	asmbl_11858	none	STRG.16867.2	1	STRG.16867.1,STRG.16867.3,Trinity_GG_9281_c0_g1_i1,blat.proc3829879.chain_1585	4
scaffold_11	retained_intron	8735988	8736072	+	asmbl_5798	none	STRG.13880.1	1	blat.proc3829877.chain_2390	1
scaffold_21	alt_acceptor	5253927	5253928	-	asmbl_27654	none	STRG.24045.2	1	STRG.24045.1,blat.proc3829899.chain_1115	2
scaffold_23	ends_in_intron	4179108	4179108	-	asmbl_31564	none	blat.proc3829899.chain_2928	1	STRG.25807.1,blat.proc3829899.chain_2927	2
scaffold_18	alt_acceptor	1903420	1903421	-	asmbl_19692,asmbl_19703,asmbl_19704	none	STRG.21072.9,blat.proc3829897.chain_1890,blat.proc3829897.chain_1898	3	STRG.21072.10,STRG.21072.2,STRG.21072.4,blat.proc3829897.chain_1892,blat.proc3829897.chain_1902	5
scaffold_19	ends_in_intron	1132983	1132983	+	asmbl_22035	none	blat.proc3829881.chain_2844	1	STRG.21889.1,blat.proc3829881.chain_2843	2
scaffold_7	ends_in_intron	1390386	1390386	-	asmbl_49534	none	Trinity_GG_21916_c3_g1_i1,blat.proc3829891.chain_930	2	STRG.8638.1,blat.proc3829891.chain_921,blat.proc3829891.chain_923,blat.proc3829891.chain_926,blat.proc3829891.chain_927	5
scaffold_16	starts_in_intron	4653837	4653837	+	asmbl_16987	none	blat.proc3829881.chain_72	1	STRG.19239.1,blat.proc3829881.chain_71	2
scaffold_18	retained_intron	11296913	11297076	-	asmbl_20157	none	Trinity_GG_29109_c0_g1_i1,blat.proc3829897.chain_2467	2	STRG.21663.1,blat.proc3829897.chain_2466,blat.proc3829897.chain_2468	3
scaffold_1	spliced_intron	6830779	6830889	-	asmbl_393,asmbl_394	none	STRG.478.1,STRG.478.2,blat.proc3829887.chain_368,blat.proc3829887.chain_369	4	blat.proc3829887.chain_367	1
scaffold_8	alt_acceptor	6018602	6018603	-	asmbl_52849	none	STRG.10005.1,Trinity_GG_22594_c0_g1_i3,blat.proc3829891.chain_2159	3	STRG.10005.2,Trinity_GG_22594_c0_g1_i2,blat.proc3829891.chain_2160	3
scaffold_8	retained_intron	11852641	11853028	+	asmbl_52272,asmbl_52273,asmbl_52274,asmbl_52279,asmbl_52281,asmbl_52282,asmbl_52283,asmbl_52284	none	STRG.10382.2,blat.proc3829875.chain_2966,blat.proc3829875.chain_2970,blat.proc3829875.chain_2971,blat.proc3829875.chain_2973,blat.proc3829875.chain_2976,blat.proc3829875.chain_2977,blat.proc3829875.chain_2978	8	STRG.10382.3,STRG.10382.4,blat.proc3829875.chain_2967,blat.proc3829875.chain_2968,blat.proc3829875.chain_2969,blat.proc3829875.chain_2972,blat.proc3829875.chain_2975,blat.proc3829875.chain_2979	8
scaffold_11	alternate_exon	9721926	9722100	+	asmbl_5852	none	STRG.13976.1,blat.proc3829877.chain_2467	2	STRG.13976.2,Trinity_GG_7707_c0_g1_i1,blat.proc3829877.chain_2468	3
scaffold_10	retained_exon	16823005	16823100	+	asmbl_5001	none	STRG.13115.2	1	STRG.13115.1	1
scaffold_3	alt_acceptor	12703125	12703126	-	asmbl_39182	none	STRG.3662.1,blat.proc3829887.chain_3415	2	STRG.3662.2	1
scaffold_1	ends_in_intron	17918777	17918777	+	asmbl_2522	none	STRG.1258.1	1	STRG.1258.2,STRG.1258.3	2
scaffold_15	alt_donor	165809	165810	+	asmbl_13889	none	STRG.17858.2	1	STRG.17858.1	1
scaffold_13	spliced_intron	2652683	2652800	-	asmbl_9425,asmbl_9427,asmbl_9429	none	STRG.15566.1,STRG.15566.2,blat.proc3829895.chain_303,blat.proc3829895.chain_304	4	blat.proc3829895.chain_305	1
scaffold_13	ends_in_intron	914789	914789	-	asmbl_9349	none	STRG.15450.2,blat.proc3829895.chain_192	2	STRG.15450.1,blat.proc3829895.chain_193	2
scaffold_27	alternate_exon	3128529	3128985	+	asmbl_36150,asmbl_36153	none	STRG.28778.3,blat.proc3829885.chain_1770	2	Trinity_GG_15900_c1_g1_i2,Trinity_GG_15900_c1_g1_i3,blat.proc3829885.chain_1768,blat.proc3829885.chain_1769	4
scaffold_13	alt_acceptor	16150110	16150111	-	asmbl_10239	none	STRG.16644.2	1	STRG.16644.3,STRG.16644.4	2
scaffold_15	alternate_exon	2782605	2782814	-	asmbl_15054	none	blat.proc3829895.chain_2771	1	STRG.18054.1	1
scaffold_19	retained_intron	13254452	13254529	-	asmbl_21847	none	STRG.22630.1,Trinity_GG_29619_c0_g1_i1,blat.proc3829897.chain_3415	3	blat.proc3829897.chain_3414	1
scaffold_23	retained_intron	4449754	4449915	-	asmbl_31586,asmbl_31590	none	STRG.25842.4,Trinity_GG_31473_c0_g1_i2,Trinity_GG_31473_c0_g1_i5,Trinity_GG_31473_c0_g1_i6,blat.proc3829899.chain_2967,blat.proc3829899.chain_2968,blat.proc3829899.chain_2969	7	STRG.25842.3,Trinity_GG_31473_c0_g1_i1,blat.proc3829899.chain_2970	3
scaffold_19	spliced_intron	11168462	11168662	+	asmbl_22474,asmbl_22476,asmbl_22477	none	STRG.22441.1,blat.proc3829881.chain_3333,blat.proc3829881.chain_3334,blat.proc3829881.chain_3335	4	blat.proc3829881.chain_3332	1
scaffold_2	skipped_exon	2454814	2455483	-	asmbl_22919	none	STRG.1690.2,blat.proc3829887.chain_1528	2	STRG.1690.1,STRG.1690.3,blat.proc3829887.chain_1531	3
scaffold_8	alt_donor	750944	750945	+	asmbl_51658	none	STRG.9719.1,blat.proc3829875.chain_2174	2	STRG.9719.2,blat.proc3829875.chain_2172	2
scaffold_7	ends_in_intron	12369183	12369183	+	asmbl_51131	none	blat.proc3829875.chain_1803	1	STRG.9325.1,blat.proc3829875.chain_1799,blat.proc3829875.chain_1800	3
scaffold_14	retained_intron	12751805	12752771	-	asmbl_13581,asmbl_13584	none	STRG.17572.2,Trinity_GG_26911_c0_g1_i1,blat.proc3829895.chain_2350,blat.proc3829895.chain_2352,blat.proc3829895.chain_2353	5	STRG.17572.1,STRG.17572.3,blat.proc3829895.chain_2351,blat.proc3829895.chain_2354	4
scaffold_12	retained_intron	12287762	12287963	-	asmbl_7987,asmbl_7989,asmbl_7990	none	STRG.15114.4,STRG.15114.5,Trinity_GG_25420_c0_g1_i2,blat.proc3829893.chain_3461	4	STRG.15114.1,STRG.15114.2,STRG.15114.3,STRG.15114.6	4
scaffold_1	spliced_intron	10763493	10763516	-	asmbl_609	none	STRG.696.2	1	STRG.696.1,Trinity_GG_17404_c1_g1_i1,blat.proc3829887.chain_630	3
scaffold_11	alternate_exon	9829604	9831254	+	asmbl_5874	none	blat.proc3829877.chain_2511	1	STRG.13996.2,blat.proc3829877.chain_2508,blat.proc3829877.chain_2512	3
scaffold_25	retained_intron	9336651	9337098	+	asmbl_33800,asmbl_33801	none	blat.proc3829885.chain_770,blat.proc3829885.chain_774	2	STRG.27743.1,blat.proc3829885.chain_772,blat.proc3829885.chain_773,blat.proc3829885.chain_775	4
scaffold_2	alt_acceptor	2993171	2993172	+	asmbl_24290	none	STRG.1740.1,blat.proc3829871.chain_1756	2	STRG.1740.2	1
scaffold_23	retained_intron	5303670	5303795	+	asmbl_30853,asmbl_30855	none	STRG.25887.1,STRG.25887.2,Trinity_GG_14289_c0_g1_i1,Trinity_GG_14289_c0_g1_i2,blat.proc3829883.chain_2768,blat.proc3829883.chain_2771	6	STRG.25887.3,Trinity_GG_14289_c0_g1_i3,Trinity_GG_14289_c0_g1_i5,blat.proc3829883.chain_2769,blat.proc3829883.chain_2772	5
scaffold_18	starts_in_intron	1900795	1900795	-	asmbl_19691,asmbl_19693,asmbl_19702,asmbl_19705	none	STRG.21072.6,STRG.21072.7,STRG.21072.8,blat.proc3829897.chain_1899	4	STRG.21072.10,STRG.21072.2,STRG.21072.3,STRG.21072.4,STRG.21072.9,blat.proc3829897.chain_1890,blat.proc3829897.chain_1892,blat.proc3829897.chain_1897,blat.proc3829897.chain_1898,blat.proc3829897.chain_1900,blat.proc3829897.chain_1901,blat.proc3829897.chain_1902	12
scaffold_2	alt_donor	7409545	7409546	-	asmbl_23281	none	STRG.2065.3,blat.proc3829887.chain_1876	2	STRG.2065.1,Trinity_GG_18123_c0_g1_i2,blat.proc3829887.chain_1877,blat.proc3829887.chain_1879	4
scaffold_14	starts_in_intron	15540267	15540267	+	asmbl_12602	none	Trinity_GG_9729_c0_g3_i2,blat.proc3829879.chain_2372	2	Trinity_GG_9729_c0_g3_i1,blat.proc3829879.chain_2371	2
scaffold_1	ends_in_intron	9981320	9981320	+	asmbl_1990	none	blat.proc3829871.chain_711	1	STRG.668.1,blat.proc3829871.chain_710	2
scaffold_10	alt_acceptor	10780277	10780278	+	asmbl_4710	none	STRG.12755.2	1	STRG.12755.1,STRG.12755.3	2
scaffold_15	spliced_intron	15188738	15189128	+	asmbl_14677,asmbl_14679,asmbl_14683,asmbl_14684	none	blat.proc3829879.chain_3471,blat.proc3829879.chain_3475,blat.proc3829879.chain_3476,blat.proc3829879.chain_3481	4	STRG.18906.3,blat.proc3829879.chain_3472,blat.proc3829879.chain_3478,blat.proc3829879.chain_3480,blat.proc3829879.chain_3485,blat.proc3829879.chain_3486	6
scaffold_12	skipped_exon	7540862	7541225	-	asmbl_7724	none	STRG.14821.1,blat.proc3829893.chain_3242	2	STRG.14821.2,blat.proc3829893.chain_3241	2
scaffold_15	retained_intron	15409791	15410185	+	asmbl_14720	none	blat.proc3829879.chain_3516	1	STRG.18921.1	1
scaffold_14	retained_intron	15831084	15831226	-	asmbl_13736	none	blat.proc3829895.chain_2466	1	STRG.17811.2	1
scaffold_7	alt_donor	12388140	12388141	-	asmbl_50013,asmbl_50015,asmbl_50016,asmbl_50018,asmbl_50019	none	STRG.9328.1,blat.proc3829891.chain_1531,blat.proc3829891.chain_1532,blat.proc3829891.chain_1533,blat.proc3829891.chain_1535,blat.proc3829891.chain_1536	6	blat.proc3829891.chain_1538	1
scaffold_11	alt_donor	7886086	7886087	+	asmbl_5656,asmbl_5657	none	STRG.13780.2,STRG.13780.3,Trinity_GG_7587_c0_g1_i3,blat.proc3829877.chain_2254	4	STRG.13780.1,Trinity_GG_7587_c0_g1_i1,Trinity_GG_7587_c0_g1_i4,blat.proc3829877.chain_2253,blat.proc3829877.chain_2255	5
scaffold_2	spliced_intron	14556531	14556641	+	asmbl_24982,asmbl_24987,asmbl_24989	none	STRG.2454.1,STRG.2454.2,STRG.2454.3	3	STRG.2454.4	1
scaffold_17	retained_intron	13467626	13467758	-	asmbl_19417	none	STRG.20813.2,blat.proc3829897.chain_1745	2	STRG.20813.1,blat.proc3829897.chain_1744	2
scaffold_4	starts_in_intron	307046	307046	-	asmbl_41067	none	STRG.4128.2,Trinity_GG_19280_c0_g1_i1,blat.proc3829889.chain_173	3	STRG.4128.1,STRG.4128.3,Trinity_GG_19280_c0_g2_i1,Trinity_GG_19280_c0_g2_i3,blat.proc3829889.chain_175,blat.proc3829889.chain_176	6
scaffold_22	spliced_intron	10089893	10089999	+	asmbl_29634	none	STRG.25343.2,Trinity_GG_13987_c0_g1_i2,blat.proc3829883.chain_2286	3	STRG.25343.1,Trinity_GG_13987_c0_g1_i1,blat.proc3829883.chain_2285	3
scaffold_1	alternate_exon	11169949	11170150	+	asmbl_2063	none	STRG.739.2	1	STRG.739.1,blat.proc3829871.chain_769	2
scaffold_15	retained_intron	15914237	15914412	+	asmbl_14794	none	Trinity_GG_10379_c0_g1_i3,blat.proc3829879.chain_3525	2	STRG.18967.1,STRG.18967.2,Trinity_GG_10379_c0_g1_i1,blat.proc3829879.chain_3524	4
scaffold_27	alt_donor	6258368	6258369	+	asmbl_36349	none	STRG.28995.2,blat.proc3829885.chain_2097	2	STRG.28995.3,blat.proc3829885.chain_2095,blat.proc3829885.chain_2096	3
scaffold_15	starts_in_intron	5629262	5629262	-	asmbl_15239	none	Trinity_GG_27277_c0_g1_i2,blat.proc3829895.chain_3004	2	STRG.18239.1,STRG.18239.2,Trinity_GG_27277_c0_g1_i1,blat.proc3829895.chain_3005	4
scaffold_3	retained_intron	17094412	17095225	-	asmbl_39484	none	Trinity_GG_19201_c0_g1_i1,Trinity_GG_19201_c0_g1_i4,blat.proc3829889.chain_19,blat.proc3829889.chain_21	4	STRG.3947.1,blat.proc3829889.chain_20	2
scaffold_17	alt_acceptor	8355514	8355515	+	asmbl_18114	none	STRG.20446.1,Trinity_GG_11203_c0_g1_i1,blat.proc3829881.chain_1234	3	STRG.20446.3,Trinity_GG_11203_c0_g1_i3,blat.proc3829881.chain_1235	3
scaffold_16	starts_in_intron	7241743	7241743	-	asmbl_16352	none	blat.proc3829897.chain_419	1	STRG.19382.6,STRG.19382.9	2
scaffold_12	starts_in_intron	6602873	6602873	+	asmbl_8668	none	blat.proc3829877.chain_3184	1	STRG.14748.1	1
scaffold_11	alt_acceptor	335278	335279	+	asmbl_5244,asmbl_5245	none	STRG.13256.2,STRG.13256.3,blat.proc3829877.chain_1774,blat.proc3829877.chain_1777	4	STRG.13256.1,blat.proc3829877.chain_1776	2
scaffold_23	retained_intron	6688346	6688422	+	asmbl_30943,asmbl_30944	none	blat.proc3829883.chain_2849,blat.proc3829883.chain_2850	2	STRG.25982.2	1
scaffold_14	alt_acceptor	7966009	7966010	-	asmbl_13219	none	STRG.17196.2,Trinity_GG_26643_c1_g1_i1,blat.proc3829895.chain_1885	3	STRG.17196.1,Trinity_GG_26643_c1_g1_i2,blat.proc3829895.chain_1886	3
scaffold_18	alt_donor	7199469	7199470	+	asmbl_20748	none	STRG.21415.1,Trinity_GG_11823_c0_g1_i1,blat.proc3829881.chain_2375	3	STRG.21415.4	1
scaffold_25	retained_intron	9043176	9043406	-	asmbl_34451	none	Trinity_GG_32528_c0_g1_i7,blat.proc3829901.chain_983	2	STRG.27702.1,STRG.27702.2,STRG.27702.3,blat.proc3829901.chain_982,blat.proc3829901.chain_984,blat.proc3829901.chain_985,blat.proc3829901.chain_986,blat.proc3829901.chain_988	8
scaffold_21	retained_intron	8004779	8005332	+	asmbl_28790,asmbl_28792	none	STRG.24326.2,Trinity_GG_13472_c0_g1_i7,blat.proc3829883.chain_1460,blat.proc3829883.chain_1464	4	STRG.24326.1,blat.proc3829883.chain_1461	2
scaffold_24	alt_acceptor	9071989	9071990	+	asmbl_32495,asmbl_32499,asmbl_32501,asmbl_32502	none	STRG.26929.1,STRG.26929.2,Trinity_GG_14897_c0_g1_i2,Trinity_GG_14897_c0_g1_i6,Trinity_GG_14897_c0_g1_i8,blat.proc3829885.chain_73,blat.proc3829885.chain_74,blat.proc3829885.chain_77	8	Trinity_GG_14897_c0_g1_i5,blat.proc3829885.chain_75	2
scaffold_15	spliced_intron	4493364	4493480	+	asmbl_14083,asmbl_14084,asmbl_14085,asmbl_14089	none	STRG.18165.1,blat.proc3829879.chain_2746,blat.proc3829879.chain_2747,blat.proc3829879.chain_2748,blat.proc3829879.chain_2749	5	STRG.18165.2,blat.proc3829879.chain_2750	2
scaffold_4	alt_acceptor	17805996	17805997	+	asmbl_43414,asmbl_43418	none	STRG.5378.2,blat.proc3829873.chain_1628	2	blat.proc3829873.chain_1627	1
scaffold_19	alt_acceptor	827107	827108	-	asmbl_21213,asmbl_21214	none	STRG.21862.4,blat.proc3829897.chain_2631	2	STRG.21862.1,STRG.21862.2,STRG.21862.3,STRG.21862.5,blat.proc3829897.chain_2632,blat.proc3829897.chain_2633	6
scaffold_9	alt_acceptor	11777748	11777749	+	asmbl_54361	none	STRG.11478.2	1	STRG.11478.1	1
scaffold_21	retained_intron	5137245	5137358	-	asmbl_27638	none	STRG.24046.7	1	STRG.24046.1,STRG.24046.4	2
scaffold_15	retained_intron	6104285	6104570	-	asmbl_15260	none	blat.proc3829895.chain_3033	1	STRG.18262.1,Trinity_GG_27287_c0_g1_i4,blat.proc3829895.chain_3032,blat.proc3829895.chain_3034	4
scaffold_25	alt_acceptor	6164213	6164214	+	asmbl_33594	none	STRG.27487.1,blat.proc3829885.chain_499	2	STRG.27487.4	1
scaffold_3	spliced_intron	10946294	10946668	-	asmbl_39079,asmbl_39080	none	STRG.3536.1,STRG.3536.2,blat.proc3829887.chain_3310,blat.proc3829887.chain_3313	4	blat.proc3829887.chain_3311,blat.proc3829887.chain_3312	2
scaffold_8	starts_in_intron	6119754	6119754	+	asmbl_51930	none	STRG.10007.3	1	STRG.10007.1,STRG.10007.2,Trinity_GG_5582_c0_g1_i7,blat.proc3829875.chain_2524,blat.proc3829875.chain_2527	5
scaffold_5	ends_in_intron	6014059	6014059	-	asmbl_45467	none	Trinity_GG_20407_c0_g2_i9,blat.proc3829889.chain_2114	2	STRG.6011.1,blat.proc3829889.chain_2115	2
scaffold_3	alt_donor	14370813	14370814	-	asmbl_39316	none	STRG.3776.1,Trinity_GG_19092_c0_g1_i1,blat.proc3829887.chain_3552	3	STRG.3776.2	1
scaffold_5	retained_exon	7708535	7708630	+	asmbl_44165	none	STRG.6139.2	1	STRG.6139.1,Trinity_GG_3357_c0_g1_i3,blat.proc3829873.chain_2297,blat.proc3829873.chain_2298,blat.proc3829873.chain_2299	5
scaffold_11	spliced_intron	8100073	8100172	+	asmbl_5686,asmbl_5687,asmbl_5688,asmbl_5689,asmbl_5692	none	STRG.13810.1,STRG.13810.2,STRG.13810.3,STRG.13810.4,Trinity_GG_7614_c0_g1_i1,Trinity_GG_7614_c0_g1_i3,Trinity_GG_7614_c0_g1_i4,Trinity_GG_7614_c0_g1_i6,blat.proc3829877.chain_2293,blat.proc3829877.chain_2294,blat.proc3829877.chain_2295,blat.proc3829877.chain_2296	12	Trinity_GG_7614_c0_g1_i2,Trinity_GG_7614_c0_g1_i5,blat.proc3829877.chain_2292,blat.proc3829877.chain_2297	4
scaffold_4	alt_donor	105608	105609	-	asmbl_41043	none	STRG.4109.1,blat.proc3829889.chain_228	2	Trinity_GG_19304_c1_g1_i4,blat.proc3829889.chain_226	2
scaffold_6	starts_in_intron	13354794	13354794	-	asmbl_48845	none	Trinity_GG_21582_c0_g1_i8,blat.proc3829891.chain_339	2	STRG.8087.1,STRG.8087.2,blat.proc3829891.chain_337,blat.proc3829891.chain_338,blat.proc3829891.chain_340,blat.proc3829891.chain_341	6
scaffold_25	spliced_intron	1432432	1432523	+	asmbl_33364	none	blat.proc3829901.chain_470	1	STRG.27159.4	1
scaffold_15	alt_acceptor	13847929	13847930	-	asmbl_15697	none	STRG.18804.2	1	STRG.18804.1	1
scaffold_7	starts_in_intron	7186847	7186847	+	asmbl_50787	none	STRG.8964.4,Trinity_GG_4971_c0_g1_i2,blat.proc3829875.chain_1427	3	STRG.8964.1,STRG.8964.2,STRG.8964.3,blat.proc3829875.chain_1425,blat.proc3829875.chain_1426	5
scaffold_28	spliced_intron	2622616	2622713	+	asmbl_38083	none	STRG.29418.1,blat.proc3829885.chain_2523	2	blat.proc3829885.chain_2522	1
scaffold_15	spliced_intron	15906565	15906998	-	asmbl_15822,asmbl_15823,asmbl_15824,asmbl_15825	none	STRG.18963.1,Trinity_GG_27666_c0_g1_i3,Trinity_GG_27666_c0_g1_i4,Trinity_GG_27666_c0_g1_i5,Trinity_GG_27666_c0_g1_i8,blat.proc3829895.chain_3732,blat.proc3829895.chain_3733,blat.proc3829895.chain_3734,blat.proc3829895.chain_3735	9	Trinity_GG_27666_c0_g1_i1,Trinity_GG_27666_c0_g1_i9,blat.proc3829895.chain_3736,blat.proc3829895.chain_3737	4
scaffold_3	alternate_exon	11975635	11978457	+	asmbl_40337	none	STRG.3621.2,Trinity_GG_2035_c0_g1_i1,Trinity_GG_2035_c2_g1_i1,blat.proc3829873.chain_20,blat.proc3829873.chain_25	5	Trinity_GG_2035_c0_g1_i3,blat.proc3829873.chain_22	2
scaffold_25	alt_donor	3820401	3820402	-	asmbl_34143	none	Trinity_GG_32309_c0_g1_i3,blat.proc3829901.chain_623	2	Trinity_GG_32309_c0_g1_i1,blat.proc3829901.chain_621	2
scaffold_14	starts_in_intron	9999654	9999654	-	asmbl_13382	none	Trinity_GG_26738_c0_g2_i1,blat.proc3829895.chain_2064	2	STRG.17356.2,Trinity_GG_26738_c0_g1_i1,blat.proc3829895.chain_2059	3
scaffold_13	alt_acceptor	6137549	6137550	-	asmbl_9735	none	STRG.15904.1,Trinity_GG_25956_c0_g1_i3,blat.proc3829895.chain_671	3	STRG.15904.2	1
scaffold_2	alt_acceptor	9241516	9241517	-	asmbl_23386	none	STRG.2169.1,blat.proc3829887.chain_2092	2	STRG.2169.2	1
scaffold_13	alternate_exon	9328408	9332962	-	asmbl_9976	none	STRG.16187.1,blat.proc3829895.chain_855	2	blat.proc3829895.chain_959	1
scaffold_20	alt_acceptor	967297	967298	+	asmbl_25551	none	STRG.22792.3	1	STRG.22792.1,STRG.22792.2,Trinity_GG_12589_c0_g1_i3,Trinity_GG_12589_c0_g1_i4	4
scaffold_5	alt_acceptor	7315372	7315373	+	asmbl_44147,asmbl_44148	none	STRG.6118.2,blat.proc3829873.chain_2270	2	STRG.6118.1,blat.proc3829873.chain_2271	2
scaffold_10	spliced_intron	8898870	8899178	-	asmbl_3532,asmbl_3533,asmbl_3534,asmbl_3535,asmbl_3536,asmbl_3537,asmbl_3539,asmbl_3540,asmbl_3541,asmbl_3542	none	STRG.12629.1,blat.proc3829893.chain_1125,blat.proc3829893.chain_1127,blat.proc3829893.chain_1129,blat.proc3829893.chain_1130,blat.proc3829893.chain_1131,blat.proc3829893.chain_1132,blat.proc3829893.chain_1133,blat.proc3829893.chain_1134,blat.proc3829893.chain_1136	10	blat.proc3829885.chain_3306	1
scaffold_7	alternate_exon	11246854	11247448	+	asmbl_51046	none	STRG.9265.1	1	STRG.9265.2,STRG.9265.3,Trinity_GG_5108_c0_g1_i2,blat.proc3829875.chain_1651,blat.proc3829875.chain_1652	5
scaffold_15	ends_in_intron	1263239	1263239	+	asmbl_13935,asmbl_13939	none	STRG.17926.2,STRG.17926.3,blat.proc3829879.chain_2601	3	STRG.17926.1,blat.proc3829879.chain_2600,blat.proc3829879.chain_2602	3
scaffold_5	spliced_intron	18514607	18514706	-	asmbl_46219	none	STRG.6974.2,blat.proc3829889.chain_2929	2	STRG.6974.1,blat.proc3829889.chain_2930	2
scaffold_12	spliced_intron	7974105	7974222	+	asmbl_8769,asmbl_8771	none	STRG.14847.1,blat.proc3829877.chain_3357,blat.proc3829877.chain_3358,blat.proc3829877.chain_3360	4	STRG.14847.3	1
scaffold_12	ends_in_intron	3692985	3692985	+	asmbl_8528	none	Trinity_GG_8045_c0_g1_i1,blat.proc3829877.chain_3056	2	STRG.14563.1,STRG.14563.2,Trinity_GG_8045_c0_g1_i2,blat.proc3829877.chain_3055	4
scaffold_21	alternate_exon	691873	692434	+	asmbl_28304	none	STRG.23742.3,Trinity_GG_13161_c0_g1_i1	2	STRG.23742.1	1
scaffold_24	spliced_intron	7786686	7786927	-	asmbl_33051	none	blat.proc3829901.chain_126	1	blat.proc3829901.chain_125	1
scaffold_18	alt_acceptor	8593259	8593260	+	asmbl_20870	none	STRG.21515.1,blat.proc3829881.chain_2521	2	STRG.21515.3	1
scaffold_13	spliced_intron	2571028	2571173	+	asmbl_10608,asmbl_10609,asmbl_10610,asmbl_10612,asmbl_10613,asmbl_10614	none	STRG.15550.1,Trinity_GG_8519_c0_g1_i1,Trinity_GG_8519_c0_g1_i3,blat.proc3829879.chain_189,blat.proc3829879.chain_190,blat.proc3829879.chain_191,blat.proc3829879.chain_192,blat.proc3829879.chain_193,blat.proc3829879.chain_195	9	Trinity_GG_8519_c0_g1_i8,blat.proc3829879.chain_188,blat.proc3829879.chain_194	3
scaffold_2	alternate_exon	13399012	13399886	+	asmbl_24875,asmbl_24877	none	Trinity_GG_1292_c0_g1_i5,blat.proc3829871.chain_2406,blat.proc3829871.chain_2409	3	STRG.2357.2,blat.proc3829871.chain_2405,blat.proc3829871.chain_2407	3
scaffold_2	alternate_exon	20313282	20313307	+	asmbl_25357	none	STRG.2875.4	1	STRG.2875.1,Trinity_GG_1621_c0_g1_i2,blat.proc3829871.chain_3035	3
scaffold_1	spliced_intron	14355864	14355968	-	asmbl_905	none	blat.proc3829887.chain_906	1	blat.proc3829887.chain_908	1
scaffold_8	alt_donor	5554091	5554092	-	asmbl_52830	none	blat.proc3829891.chain_2058	1	blat.proc3829891.chain_2060	1
scaffold_7	alt_acceptor	15031483	15031484	-	asmbl_50172,asmbl_50173	none	STRG.9514.1,STRG.9514.2	2	STRG.9514.3	1
scaffold_4	skipped_exon	8989644	8991065	-	asmbl_41540	none	STRG.4717.3	1	STRG.4717.4	1
scaffold_13	spliced_intron	9957806	9957985	+	asmbl_11204	none	STRG.16223.1	1	STRG.16223.2,blat.proc3829879.chain_959	2
scaffold_2	spliced_intron	15894798	15894963	+	asmbl_25107	none	STRG.2531.2	1	STRG.2531.1,Trinity_GG_1411_c0_g1_i1,blat.proc3829871.chain_2670	3
scaffold_28	ends_in_intron	4754985	4754985	+	asmbl_38241	none	Trinity_GG_16425_c0_g1_i1,blat.proc3829885.chain_2733	2	STRG.29618.1,blat.proc3829885.chain_2734	2
scaffold_7	starts_in_intron	8621452	8621452	+	asmbl_50917	none	blat.proc3829875.chain_1502	1	STRG.9089.1,STRG.9089.2,blat.proc3829875.chain_1500,blat.proc3829875.chain_1501,blat.proc3829875.chain_1503	5
scaffold_16	starts_in_intron	8907691	8907691	+	asmbl_17250	none	blat.proc3829881.chain_309	1	STRG.19498.1	1
scaffold_9	spliced_intron	11837109	11837256	-	asmbl_55287,asmbl_55289,asmbl_55290,asmbl_55291,asmbl_55292	none	STRG.11489.1,STRG.11489.2,blat.proc3829891.chain_3600,blat.proc3829891.chain_3601,blat.proc3829891.chain_3602,blat.proc3829891.chain_3603,blat.proc3829891.chain_3604	7	STRG.11489.3,blat.proc3829891.chain_3605	2
scaffold_7	alt_acceptor	12271203	12271204	+	asmbl_51110,asmbl_51116	none	STRG.9313.2,STRG.9313.3,STRG.9313.5,Trinity_GG_5141_c0_g1_i1,Trinity_GG_5141_c0_g1_i2,blat.proc3829875.chain_1714	6	STRG.9313.4,Trinity_GG_5141_c0_g1_i5,Trinity_GG_5141_c0_g1_i6,blat.proc3829875.chain_1712	4
scaffold_13	retained_intron	9957806	9957985	+	asmbl_11203	none	STRG.16223.2,blat.proc3829879.chain_959	2	STRG.16223.1	1
scaffold_5	retained_exon	236514	237501	-	asmbl_45154	none	STRG.5594.2	1	STRG.5594.1,Trinity_GG_20172_c0_g1_i1,blat.proc3829889.chain_1710	3
scaffold_24	starts_in_intron	6066702	6066702	+	asmbl_32287	none	Trinity_GG_14710_c2_g1_i1,blat.proc3829883.chain_3497	2	STRG.26647.1,blat.proc3829883.chain_3494	2
scaffold_5	alt_donor	6289650	6289651	+	asmbl_44079	none	Trinity_GG_3287_c0_g1_i1,blat.proc3829873.chain_2167	2	STRG.6032.1	1
scaffold_2	starts_in_intron	5254626	5254626	+	asmbl_24439	none	blat.proc3829871.chain_1983	1	STRG.1942.1,blat.proc3829871.chain_1984	2
scaffold_6	starts_in_intron	13215816	13215816	+	asmbl_47436	none	Trinity_GG_4401_c1_g1_i1,blat.proc3829875.chain_434	2	STRG.8073.1,Trinity_GG_4401_c0_g1_i1,blat.proc3829875.chain_433	3
scaffold_1	ends_in_intron	12975074	12975074	+	asmbl_2272	none	blat.proc3829871.chain_1017	1	STRG.933.1,blat.proc3829871.chain_1021	2
scaffold_1	spliced_intron	5962878	5963181	-	asmbl_308,asmbl_310,asmbl_311,asmbl_312	none	STRG.395.1,blat.proc3829887.chain_270,blat.proc3829887.chain_271,blat.proc3829887.chain_272,blat.proc3829887.chain_273	5	Trinity_GG_17226_c0_g2_i1,blat.proc3829887.chain_274	2
scaffold_11	starts_in_intron	7597532	7597532	-	asmbl_6752	none	STRG.13754.2,Trinity_GG_24683_c0_g1_i2,blat.proc3829893.chain_2148	3	STRG.13754.1,Trinity_GG_24683_c0_g1_i3,blat.proc3829893.chain_2147	3
scaffold_1	retained_intron	17975385	17975557	-	asmbl_1071	none	STRG.1262.1,Trinity_GG_17692_c0_g1_i1	2	STRG.1262.2	1
scaffold_15	alt_acceptor	12000429	12000430	-	asmbl_15564,asmbl_15565	none	STRG.18630.2,STRG.18630.3,Trinity_GG_27487_c0_g1_i1,Trinity_GG_27487_c0_g1_i7,blat.proc3829895.chain_3418,blat.proc3829895.chain_3420	6	STRG.18630.1,Trinity_GG_27487_c0_g1_i3,blat.proc3829895.chain_3415	3
scaffold_5	alt_acceptor	9704594	9704595	-	asmbl_45679	none	blat.proc3829889.chain_2369	1	STRG.6283.2	1
scaffold_1	retained_intron	9306890	9306967	+	asmbl_1972	none	blat.proc3829871.chain_691	1	STRG.628.1,blat.proc3829871.chain_690,blat.proc3829871.chain_692	3
scaffold_9	alt_acceptor	11209	11210	-	asmbl_54763	none	STRG.10751.2	1	STRG.10751.1,Trinity_GG_23002_c0_g1_i1,blat.proc3829891.chain_2955	3
scaffold_9	spliced_intron	13278982	13279273	+	asmbl_54473	none	STRG.11615.2	1	STRG.11615.1,blat.proc3829877.chain_402	2
scaffold_9	alt_donor	13297277	13297278	-	asmbl_55380,asmbl_55386	none	STRG.11625.5,STRG.11625.6	2	STRG.11625.1,STRG.11625.2,STRG.11625.3,STRG.11625.4,STRG.11625.7	5
scaffold_13	ends_in_intron	7096555	7096555	-	asmbl_9811	none	blat.proc3829895.chain_772	1	STRG.16000.1,STRG.16000.2,STRG.16000.3,blat.proc3829895.chain_771,blat.proc3829895.chain_773,blat.proc3829895.chain_774	6
scaffold_78	alt_acceptor	17360	17361	+	asmbl_51614	none	STRG.30102.2	1	STRG.30102.1,Trinity_GG_16670_c1_g1_i2	2
scaffold_23	alternate_exon	4100078	4104118	-	asmbl_31552	none	blat.proc3829899.chain_2934	1	blat.proc3829899.chain_2933	1
scaffold_15	alt_donor	2563261	2563262	+	asmbl_14007	none	STRG.18036.2	1	STRG.18036.1,STRG.18036.3	2
scaffold_28	alternate_exon	7776183	7776231	-	asmbl_37743	none	STRG.29827.1,blat.proc3829901.chain_2945	2	STRG.29827.2,blat.proc3829901.chain_2944	2
scaffold_25	spliced_intron	4442011	4442378	+	asmbl_33494,asmbl_33498	none	STRG.27356.4,Trinity_GG_15095_c0_g1_i2,blat.proc3829885.chain_403	3	STRG.27356.1,STRG.27356.2,Trinity_GG_15095_c0_g1_i3,blat.proc3829885.chain_404	4
scaffold_1	spliced_intron	12916451	12916553	+	asmbl_2257	none	STRG.919.1,blat.proc3829871.chain_976	2	STRG.919.2,blat.proc3829871.chain_974	2
scaffold_1	alternate_exon	2398031	2401095	-	asmbl_120	none	STRG.151.1,blat.proc3829887.chain_53	2	STRG.151.2,Trinity_GG_17105_c0_g1_i1,blat.proc3829887.chain_52	3
scaffold_9	alt_acceptor	6396897	6396898	-	asmbl_55015	none	STRG.11162.1,blat.proc3829891.chain_3250	2	STRG.11162.2	1
scaffold_7	retained_intron	13546262	13546404	+	asmbl_51244	none	blat.proc3829875.chain_1928	1	STRG.9465.1,blat.proc3829875.chain_1926,blat.proc3829875.chain_1929	3
scaffold_20	starts_in_intron	9442162	9442162	-	asmbl_26957	none	blat.proc3829899.chain_448	1	STRG.23470.1,STRG.23470.2,Trinity_GG_30068_c0_g1_i1,blat.proc3829899.chain_445,blat.proc3829899.chain_446	5
scaffold_13	spliced_intron	6615541	6615731	+	asmbl_10937,asmbl_10938	none	STRG.15948.1,blat.proc3829879.chain_586,blat.proc3829879.chain_588	3	blat.proc3829879.chain_589	1
scaffold_5	alternate_exon	4774524	4774761	-	asmbl_45396	none	STRG.5933.2,blat.proc3829889.chain_2043	2	STRG.5933.1,STRG.5933.3,STRG.5933.4	3
scaffold_11	alternate_exon	9149690	9149768	+	asmbl_5835	none	STRG.13940.3	1	STRG.13940.1,blat.proc3829877.chain_2458	2
scaffold_13	starts_in_intron	9779351	9779351	-	asmbl_10003	none	blat.proc3829895.chain_1002	1	STRG.16218.1,blat.proc3829895.chain_1001	2
scaffold_15	alternate_exon	14752806	14757419	-	asmbl_15762	none	STRG.18886.1,blat.proc3829895.chain_3654	2	STRG.18886.2,STRG.18886.3,blat.proc3829895.chain_3655	3
scaffold_6	starts_in_intron	12208853	12208853	+	asmbl_47322	none	Trinity_GG_4376_c0_g1_i2,blat.proc3829875.chain_385	2	STRG.7982.1,STRG.7982.2,Trinity_GG_4376_c0_g1_i1,Trinity_GG_4376_c0_g1_i3,Trinity_GG_4376_c0_g1_i4,blat.proc3829875.chain_383,blat.proc3829875.chain_384,blat.proc3829875.chain_386	8
scaffold_23	alt_acceptor	4163045	4163046	-	asmbl_31560	none	STRG.25815.2,blat.proc3829899.chain_2930	2	STRG.25815.1,blat.proc3829899.chain_2931	2
scaffold_17	ends_in_intron	9031306	9031306	-	asmbl_19185	none	Trinity_GG_28534_c2_g1_i1,blat.proc3829897.chain_1458	2	STRG.20520.1,STRG.20520.3,STRG.20520.4,STRG.20520.5,STRG.20520.6	5
scaffold_18	alternate_exon	12935842	12935899	+	asmbl_21004	none	blat.proc3829897.chain_2535	1	STRG.21731.2	1
scaffold_3	starts_in_intron	7635966	7635966	-	asmbl_38925	none	blat.proc3829887.chain_3157	1	STRG.3352.1,STRG.3352.2,blat.proc3829887.chain_3158	3
scaffold_13	starts_in_intron	3145227	3145227	+	asmbl_10648	none	blat.proc3829879.chain_322	1	STRG.15607.1,blat.proc3829879.chain_321	2
scaffold_8	alt_donor	5977302	5977303	-	asmbl_52846	none	STRG.9999.1,blat.proc3829891.chain_2178	2	STRG.9999.2	1
scaffold_3026	spliced_intron	362	614	+	asmbl_40861	none	STRG.30791.3	1	STRG.30791.2,blat.proc3829885.chain_3636	2
scaffold_14	spliced_intron	15693744	15694154	-	asmbl_13722	none	blat.proc3829895.chain_2522	1	STRG.17796.1	1
scaffold_14	starts_in_intron	8528741	8528741	+	asmbl_12231	none	blat.proc3829879.chain_1929	1	STRG.17273.1,blat.proc3829879.chain_1930	2
scaffold_4	starts_in_intron	3260254	3260254	-	asmbl_41174	none	blat.proc3829889.chain_357	1	blat.proc3829889.chain_355	1
scaffold_23	retained_exon	4228479	4229383	-	asmbl_31571	none	STRG.25818.2	1	STRG.25818.3,blat.proc3829899.chain_2943,blat.proc3829899.chain_2944	3
scaffold_24	alternate_exon	4319255	4319531	+	asmbl_32202	none	Trinity_GG_14664_c0_g1_i1,blat.proc3829883.chain_3428	2	STRG.26578.2	1
scaffold_17	ends_in_intron	13035107	13035107	+	asmbl_18426	none	blat.proc3829881.chain_1633	1	STRG.20783.1,blat.proc3829881.chain_1632	2
scaffold_18	alt_acceptor	7662030	7662031	+	asmbl_20793	none	STRG.21461.4	1	STRG.21461.2	1
scaffold_5	spliced_intron	5622048	5622220	-	asmbl_45439,asmbl_45440,asmbl_45441	none	STRG.5980.1,STRG.5980.2,blat.proc3829889.chain_1966	3	Trinity_GG_20335_c0_g1_i3,blat.proc3829889.chain_1969	2
scaffold_21	alternate_exon	11992302	11992469	-	asmbl_28170	none	STRG.24637.2	1	STRG.24637.1,Trinity_GG_30779_c0_g1_i1,blat.proc3829899.chain_1753	3
scaffold_5	starts_in_intron	5026440	5026440	-	asmbl_45409	none	blat.proc3829889.chain_2014	1	STRG.5947.1,blat.proc3829889.chain_2013	2
scaffold_20	starts_in_intron	1016345	1016345	-	asmbl_26459	none	STRG.22796.1	1	STRG.22796.2,blat.proc3829897.chain_3569	2
scaffold_9	retained_intron	6284420	6284513	+	asmbl_54073	none	blat.proc3829875.chain_3664	1	STRG.11158.1,blat.proc3829875.chain_3663	2
scaffold_7	alternate_exon	4048295	4048433	+	asmbl_50592	none	STRG.8794.1,Trinity_GG_4791_c0_g1_i1	2	STRG.8794.2,Trinity_GG_4791_c0_g1_i2	2
scaffold_26	starts_in_intron	4803023	4803023	-	asmbl_34868	none	Trinity_GG_32780_c0_g1_i1,blat.proc3829901.chain_1371	2	STRG.28178.1,STRG.28178.2,Trinity_GG_32780_c0_g1_i3,blat.proc3829901.chain_1372	4
scaffold_28	alt_acceptor	303714	303715	+	asmbl_37968	none	STRG.29244.2	1	STRG.29244.1,blat.proc3829885.chain_2416,blat.proc3829885.chain_2419	3
scaffold_27	ends_in_intron	3869959	3869959	+	asmbl_36187,asmbl_36188	none	STRG.28827.2,blat.proc3829885.chain_1969	2	blat.proc3829885.chain_1967	1
scaffold_10	starts_in_intron	3787047	3787047	+	asmbl_4353	none	Trinity_GG_6750_c1_g1_i1,blat.proc3829877.chain_843	2	STRG.12213.1	1
scaffold_1	alternate_exon	11444143	11445015	+	asmbl_2098	none	STRG.750.1,blat.proc3829871.chain_796	2	STRG.750.2,blat.proc3829871.chain_797	2
scaffold_7	alternate_exon	3965012	3965160	+	asmbl_50583	none	STRG.8785.1,blat.proc3829875.chain_1145	2	STRG.8785.2,blat.proc3829875.chain_1144	2
scaffold_10	retained_exon	11602116	11602229	+	asmbl_4749,asmbl_4750,asmbl_4751,asmbl_4758	none	STRG.12807.1,STRG.12807.2,STRG.12807.5,blat.proc3829877.chain_1380,blat.proc3829877.chain_1381,blat.proc3829877.chain_1384	6	blat.proc3829877.chain_1378	1
scaffold_13	spliced_intron	12104495	12104834	+	asmbl_11316	none	Trinity_GG_8989_c0_g1_i5,blat.proc3829879.chain_1104	2	STRG.16334.2,Trinity_GG_8989_c0_g1_i3,blat.proc3829879.chain_1101	3
scaffold_11	retained_exon	9830569	9830657	+	asmbl_5871	none	STRG.13996.4,blat.proc3829877.chain_2506	2	STRG.13996.2,blat.proc3829877.chain_2508,blat.proc3829877.chain_2512	3
scaffold_1	ends_in_intron	16248776	16248776	+	asmbl_2454	none	Trinity_GG_688_c0_g1_i5,blat.proc3829871.chain_1231	2	STRG.1133.1	1
scaffold_1	starts_in_intron	5734180	5734180	+	asmbl_1762	none	STRG.380.3	1	STRG.380.1,STRG.380.2,blat.proc3829871.chain_442,blat.proc3829871.chain_443,blat.proc3829871.chain_446	5
scaffold_12	ends_in_intron	10605027	10605027	+	asmbl_8915	none	blat.proc3829877.chain_3506	1	STRG.15020.1,STRG.15020.2,STRG.15020.3,STRG.15020.4,blat.proc3829877.chain_3504,blat.proc3829877.chain_3505,blat.proc3829877.chain_3508,blat.proc3829877.chain_3509	8
scaffold_12	alt_donor	14882804	14882805	+	asmbl_9058	none	STRG.15257.2,blat.proc3829877.chain_3645	2	STRG.15257.1,blat.proc3829877.chain_3644	2
scaffold_3	spliced_intron	19029164	19029934	-	asmbl_39585	none	blat.proc3829889.chain_121	1	blat.proc3829889.chain_120	1
scaffold_23	starts_in_intron	7940184	7940184	-	asmbl_31780	none	STRG.26079.1	1	STRG.26079.2,STRG.26079.3,blat.proc3829899.chain_3197	3
scaffold_13	spliced_intron	16250502	16250688	+	asmbl_11544	none	STRG.16665.2,blat.proc3829879.chain_1404	2	Trinity_GG_9162_c0_g1_i3,Trinity_GG_9183_c0_g1_i2,blat.proc3829879.chain_1372,blat.proc3829879.chain_1402	4
scaffold_22	alternate_exon	6217104	6223386	-	asmbl_30092,asmbl_30093	none	STRG.24965.1,STRG.24965.2	2	STRG.24965.3	1
scaffold_1	alternate_exon	3679503	3680318	+	asmbl_1625	none	blat.proc3829871.chain_294	1	STRG.237.3	1
scaffold_11	retained_exon	13093789	13094015	+	asmbl_5999,asmbl_6004	none	blat.proc3829877.chain_2669,blat.proc3829877.chain_2675	2	STRG.14176.1,STRG.14176.3,blat.proc3829877.chain_2671,blat.proc3829877.chain_2672,blat.proc3829877.chain_2674,blat.proc3829877.chain_2678	6
scaffold_15	ends_in_intron	4133364	4133364	-	asmbl_15137	none	Trinity_GG_27222_c0_g1_i3,blat.proc3829895.chain_2888	2	STRG.18148.2,blat.proc3829895.chain_2889	2
scaffold_21	ends_in_intron	535616	535616	+	asmbl_28299	none	Trinity_GG_13166_c1_g1_i1,blat.proc3829883.chain_917	2	STRG.23733.1,Trinity_GG_13166_c0_g1_i1,Trinity_GG_13166_c0_g1_i2,blat.proc3829883.chain_915,blat.proc3829883.chain_916	5
scaffold_4	retained_intron	6294036	6294226	+	asmbl_42717	none	blat.proc3829873.chain_850	1	STRG.4499.1,blat.proc3829873.chain_849	2
scaffold_6	alt_acceptor	9077366	9077367	+	asmbl_47133	none	STRG.7776.2,blat.proc3829875.chain_183	2	STRG.7776.1,blat.proc3829875.chain_184	2
scaffold_18	alternate_exon	1391031	1391629	-	asmbl_19657	none	blat.proc3829897.chain_1937	1	STRG.21014.3,Trinity_GG_28799_c0_g1_i5,blat.proc3829897.chain_1931	3
scaffold_4	starts_in_intron	13184834	13184834	-	asmbl_41725	none	STRG.4963.2,blat.proc3829889.chain_1037	2	STRG.4963.1,STRG.4963.3,blat.proc3829889.chain_1036,blat.proc3829889.chain_1038	4
scaffold_28	spliced_intron	5390808	5391169	+	asmbl_38282	none	Trinity_GG_16450_c0_g1_i9,blat.proc3829885.chain_2787	2	STRG.29664.4,Trinity_GG_16450_c0_g1_i3,blat.proc3829885.chain_2785	3
scaffold_9	ends_in_intron	12635088	12635088	+	asmbl_54435	none	STRG.11574.4	1	STRG.11574.1,STRG.11574.3,Trinity_GG_6469_c0_g1_i6,blat.proc3829877.chain_355	4
scaffold_15	alt_acceptor	1508658	1508659	+	asmbl_13953	none	STRG.17946.2,Trinity_GG_9880_c0_g1_i4,blat.proc3829879.chain_2634	3	STRG.17946.1	1
scaffold_13	retained_exon	6397184	6397232	+	asmbl_10907,asmbl_10908,asmbl_10910,asmbl_10913,asmbl_10916	none	STRG.15914.2,STRG.15914.4,STRG.15914.5,Trinity_GG_8718_c0_g1_i4,Trinity_GG_8718_c0_g1_i5,Trinity_GG_8718_c0_g1_i8,Trinity_GG_8718_c0_g1_i9,blat.proc3829879.chain_549,blat.proc3829879.chain_550,blat.proc3829879.chain_552,blat.proc3829879.chain_556	11	STRG.15914.1,STRG.15914.3,Trinity_GG_8718_c0_g1_i1,Trinity_GG_8718_c0_g1_i2,blat.proc3829879.chain_555,blat.proc3829879.chain_557	6
scaffold_4	alternate_exon	8088057	8090175	-	asmbl_41484	none	STRG.4625.1	1	STRG.4625.2,Trinity_GG_19606_c0_g1_i2,blat.proc3829889.chain_732	3
scaffold_3	alt_donor	17365192	17365193	-	asmbl_39495,asmbl_39497,asmbl_39500,asmbl_39501,asmbl_39502,asmbl_39504,asmbl_39505	none	STRG.3972.1,STRG.3972.3,blat.proc3829889.chain_23,blat.proc3829889.chain_25,blat.proc3829889.chain_29,blat.proc3829889.chain_30,blat.proc3829889.chain_31	7	STRG.3972.4,blat.proc3829889.chain_24	2
scaffold_21	spliced_intron	6818461	6818654	+	asmbl_28718,asmbl_28722	none	STRG.24196.1,blat.proc3829883.chain_1300,blat.proc3829883.chain_1302	3	blat.proc3829883.chain_1301,blat.proc3829883.chain_1303,blat.proc3829883.chain_1304	3
scaffold_19	spliced_intron	8331874	8332032	-	asmbl_21502	none	STRG.22280.1	1	Trinity_GG_29384_c1_g1_i1,blat.proc3829897.chain_2941	2
scaffold_2	alternate_exon	3372916	3373010	+	asmbl_24303	none	STRG.1776.1,blat.proc3829871.chain_1821	2	STRG.1776.2,blat.proc3829871.chain_1820	2
scaffold_27	skipped_exon	3865858	3866349	+	asmbl_36188	none	blat.proc3829885.chain_1969	1	STRG.28827.2	1
scaffold_20	ends_in_intron	11502721	11502721	+	asmbl_26220	none	Trinity_GG_13041_c0_g1_i1,blat.proc3829883.chain_685	2	STRG.23641.1,STRG.23641.2,Trinity_GG_13041_c0_g1_i2,blat.proc3829883.chain_686	4
scaffold_5	starts_in_intron	9514445	9514445	-	asmbl_45664	none	blat.proc3829889.chain_2300	1	STRG.6260.1,blat.proc3829889.chain_2301	2
scaffold_18	starts_in_intron	7684899	7684899	+	asmbl_20805	none	Trinity_GG_11863_c0_g2_i1,blat.proc3829881.chain_2441	2	STRG.21464.1,STRG.21464.2,STRG.21464.3,blat.proc3829881.chain_2435,blat.proc3829881.chain_2436,blat.proc3829881.chain_2437,blat.proc3829881.chain_2440	7
scaffold_25	ends_in_intron	3292529	3292529	-	asmbl_34109,asmbl_34110	none	STRG.27260.5,Trinity_GG_32286_c0_g1_i4,blat.proc3829901.chain_580,blat.proc3829901.chain_582	4	STRG.27260.4	1
scaffold_2	starts_in_intron	10723311	10723311	+	asmbl_24767	none	STRG.2241.2	1	STRG.2241.1,blat.proc3829871.chain_2347,blat.proc3829871.chain_2348	3
scaffold_14	alt_donor	10692538	10692539	+	asmbl_12320	none	STRG.17404.2,Trinity_GG_9574_c0_g1_i1	2	STRG.17404.3,blat.proc3829879.chain_2114	2
scaffold_4	spliced_intron	13416104	13416213	+	asmbl_43121,asmbl_43122,asmbl_43125	none	STRG.4972.1,STRG.4972.2,blat.proc3829873.chain_1259,blat.proc3829873.chain_1260	4	blat.proc3829873.chain_1257,blat.proc3829873.chain_1258	2
scaffold_6	ends_in_intron	5441471	5441471	+	asmbl_46894	none	Trinity_GG_4097_c0_g1_i2,blat.proc3829873.chain_3598	2	STRG.7506.1,STRG.7506.2,Trinity_GG_4097_c0_g1_i1,Trinity_GG_4097_c0_g1_i3,blat.proc3829873.chain_3597,blat.proc3829873.chain_3599	6
scaffold_4	starts_in_intron	12793123	12793123	+	asmbl_43082,asmbl_43090	none	STRG.4920.4,blat.proc3829873.chain_1276	2	STRG.4920.1,STRG.4920.2,STRG.4920.3,blat.proc3829873.chain_1273,blat.proc3829873.chain_1274,blat.proc3829873.chain_1275	6
scaffold_26	alternate_exon	1322047	1322126	-	asmbl_34677	none	STRG.27898.4	1	STRG.27898.1,STRG.27898.2,STRG.27898.3,blat.proc3829901.chain_1144	4
scaffold_1	skipped_exon	11745095	11746185	+	asmbl_2124	none	STRG.787.2,blat.proc3829871.chain_880	2	STRG.787.1,blat.proc3829871.chain_878	2
scaffold_27	ends_in_intron	1986408	1986408	+	asmbl_36022	none	blat.proc3829885.chain_1705	1	STRG.28663.1,STRG.28663.2,blat.proc3829885.chain_1702,blat.proc3829885.chain_1704	4
scaffold_5	alt_acceptor	8411351	8411352	+	asmbl_44210,asmbl_44211	none	STRG.6180.1,STRG.6180.3,blat.proc3829873.chain_2248,blat.proc3829873.chain_2249	4	STRG.6180.2	1
scaffold_11	spliced_intron	6254831	6256304	+	asmbl_5587,asmbl_5589,asmbl_5590	none	STRG.13670.1,STRG.13670.2,blat.proc3829877.chain_2180,blat.proc3829877.chain_2181	4	STRG.13670.4,Trinity_GG_7547_c0_g1_i6,blat.proc3829877.chain_2177,blat.proc3829877.chain_2178	4
scaffold_16	alt_acceptor	10977216	10977217	-	asmbl_16499	none	STRG.19633.1,blat.proc3829897.chain_540	2	STRG.19633.2	1
scaffold_23	alt_donor	2415143	2415144	+	asmbl_30708	none	STRG.25693.4	1	STRG.25693.1,STRG.25693.3,Trinity_GG_14189_c0_g1_i1,blat.proc3829883.chain_2608,blat.proc3829883.chain_2609	5
scaffold_6	retained_intron	8581614	8581696	+	asmbl_47086,asmbl_47090	none	STRG.7732.2,blat.proc3829875.chain_110	2	STRG.7732.3,STRG.7732.4	2
scaffold_28	retained_exon	3839986	3840025	+	asmbl_38186	none	STRG.29557.2,blat.proc3829885.chain_2700	2	STRG.29557.1,blat.proc3829885.chain_2697	2
scaffold_15	retained_exon	12032101	12032194	+	asmbl_14457	none	STRG.18636.2,Trinity_GG_10227_c0_g1_i2,blat.proc3829879.chain_3226	3	STRG.18636.1,Trinity_GG_10227_c0_g1_i1,Trinity_GG_10227_c0_g1_i3,blat.proc3829879.chain_3227,blat.proc3829879.chain_3228	5
scaffold_11	retained_intron	8082241	8082340	+	asmbl_5678,asmbl_5679,asmbl_5680	none	STRG.13803.1,STRG.13803.2,Trinity_GG_7572_c0_g1_i1,Trinity_GG_7572_c0_g1_i2,Trinity_GG_7572_c0_g1_i4,blat.proc3829877.chain_2231,blat.proc3829877.chain_2232,blat.proc3829877.chain_2233	8	Trinity_GG_7572_c0_g1_i3,blat.proc3829877.chain_2234	2
scaffold_25	spliced_intron	3186833	3186999	-	asmbl_34100,asmbl_34101	none	STRG.27241.1,blat.proc3829901.chain_566,blat.proc3829901.chain_567	3	STRG.27241.2,STRG.27241.3,blat.proc3829901.chain_565	3
scaffold_13	retained_intron	7911717	7911794	+	asmbl_11066	none	blat.proc3829879.chain_792	1	STRG.16053.1,blat.proc3829879.chain_793	2
scaffold_8	alt_acceptor	16499427	16499428	-	asmbl_53413,asmbl_53415,asmbl_53416,asmbl_53422,asmbl_53430	none	STRG.10621.1,Trinity_GG_22960_c0_g1_i18,Trinity_GG_22960_c0_g1_i22,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2857,blat.proc3829891.chain_2864,blat.proc3829891.chain_2868,blat.proc3829891.chain_2870	8	STRG.10621.2,STRG.10621.5,Trinity_GG_22960_c0_g1_i19,Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i27,blat.proc3829891.chain_2855,blat.proc3829891.chain_2863,blat.proc3829891.chain_2869,blat.proc3829891.chain_2872	9
scaffold_2	ends_in_intron	1483801	1483801	+	asmbl_24225	none	STRG.1625.1,blat.proc3829871.chain_1728	2	STRG.1625.2	1
scaffold_25	retained_exon	3631293	3631774	+	asmbl_33431,asmbl_33433,asmbl_33435,asmbl_33436	none	STRG.27294.1,STRG.27294.2,blat.proc3829885.chain_341,blat.proc3829885.chain_342,blat.proc3829885.chain_343	5	STRG.27294.3	1
scaffold_18	starts_in_intron	4561121	4561121	-	asmbl_19846	none	blat.proc3829897.chain_2057	1	STRG.21234.1,STRG.21234.2	2
scaffold_27	ends_in_intron	4457448	4457448	-	asmbl_36909	none	Trinity_GG_33158_c0_g1_i3,blat.proc3829901.chain_2018	2	STRG.28878.1,STRG.28878.2,blat.proc3829901.chain_2019,blat.proc3829901.chain_2020	4
scaffold_17	starts_in_intron	14060273	14060273	+	asmbl_18498	none	Trinity_GG_11471_c0_g1_i1,blat.proc3829881.chain_1715	2	STRG.20864.1,blat.proc3829881.chain_1714	2
scaffold_20	starts_in_intron	10784403	10784403	+	asmbl_26144	none	Trinity_GG_13055_c0_g1_i1,blat.proc3829883.chain_723	2	STRG.23591.1,blat.proc3829883.chain_724	2
scaffold_16	ends_in_intron	7218051	7218051	-	asmbl_16355	none	STRG.19382.7	1	STRG.19382.1,STRG.19382.2,STRG.19382.3,STRG.19382.4,STRG.19382.5,STRG.19382.6	6
scaffold_14	alt_acceptor	5958798	5958799	-	asmbl_13088	none	STRG.17045.1,blat.proc3829895.chain_1724	2	STRG.17045.2	1
scaffold_7	ends_in_intron	5292911	5292911	+	asmbl_50691	none	Trinity_GG_4856_c0_g1_i1,blat.proc3829875.chain_1246	2	STRG.8857.1,blat.proc3829875.chain_1245	2
scaffold_2	retained_exon	14391844	14391978	+	asmbl_24956,asmbl_24958	none	STRG.2437.1,STRG.2437.2,blat.proc3829871.chain_2619	3	STRG.2437.3,blat.proc3829871.chain_2618	2
scaffold_18	alt_acceptor	1860142	1860143	+	asmbl_20409	none	STRG.21062.2,blat.proc3829881.chain_1894	2	STRG.21062.1,blat.proc3829881.chain_1895	2
scaffold_9	spliced_intron	17851315	17852001	+	asmbl_54632	none	STRG.11860.2	1	STRG.11860.3	1
scaffold_27	alt_donor	4494558	4494559	-	asmbl_36914	none	STRG.28881.2	1	STRG.28881.1,blat.proc3829901.chain_2056	2
scaffold_1	skipped_exon	13634564	13635831	+	asmbl_2293	none	STRG.978.3,blat.proc3829871.chain_1056	2	STRG.978.1,STRG.978.2	2
scaffold_6	alt_donor	11112920	11112921	-	asmbl_48678	none	STRG.7918.1	1	STRG.7918.2	1
scaffold_2	ends_in_intron	18551307	18551307	-	asmbl_23812	none	blat.proc3829887.chain_2544	1	STRG.2727.1,blat.proc3829887.chain_2543	2
scaffold_3	retained_exon	10628698	10628825	+	asmbl_40234	none	blat.proc3829871.chain_3607	1	STRG.3509.1,blat.proc3829871.chain_3608	2
scaffold_7	alt_acceptor	129458	129459	-	asmbl_49482,asmbl_49486	none	blat.proc3829891.chain_992,blat.proc3829891.chain_998	2	STRG.8585.1,STRG.8585.8	2
scaffold_1	skipped_exon	12746690	12748390	-	asmbl_758,asmbl_760	none	STRG.892.1,STRG.892.5,blat.proc3829887.chain_754	3	Trinity_GG_17462_c0_g1_i4,blat.proc3829887.chain_757	2
scaffold_9	retained_intron	16282211	16282310	-	asmbl_55530	none	STRG.11770.3	1	STRG.11770.2,blat.proc3829893.chain_148	2
scaffold_5	retained_exon	17036890	17037031	+	asmbl_44794	none	STRG.6871.1,Trinity_GG_3743_c0_g1_i1,blat.proc3829873.chain_2968	3	STRG.6871.2,Trinity_GG_3743_c0_g1_i2,blat.proc3829873.chain_2969	3
scaffold_7	retained_intron	11412972	11413205	+	asmbl_51053	none	STRG.9275.3,blat.proc3829875.chain_1663	2	STRG.9275.2,blat.proc3829875.chain_1665	2
scaffold_20	spliced_intron	5886547	5886628	-	asmbl_26701	none	STRG.23178.1,blat.proc3829899.chain_197	2	Trinity_GG_29937_c0_g1_i1,blat.proc3829899.chain_198	2
scaffold_18	retained_exon	7662032	7662112	+	asmbl_20793	none	STRG.21461.4	1	STRG.21461.1	1
scaffold_24	starts_in_intron	39672	39672	-	asmbl_32681	none	STRG.26300.6	1	Trinity_GG_31704_c0_g1_i1,blat.proc3829899.chain_3361	2
scaffold_19	retained_exon	12394175	12394258	-	asmbl_21690,asmbl_21691,asmbl_21692	none	STRG.22557.1,STRG.22557.2,STRG.22557.3,blat.proc3829897.chain_3268,blat.proc3829897.chain_3269,blat.proc3829897.chain_3271	6	blat.proc3829897.chain_3270,blat.proc3829897.chain_3272	2
scaffold_22	retained_exon	6130242	6130438	+	asmbl_29389,asmbl_29391	none	STRG.24955.3,blat.proc3829883.chain_2009	2	STRG.24955.7,blat.proc3829883.chain_2007	2
scaffold_14	alt_acceptor	6277228	6277229	-	asmbl_13094,asmbl_13096,asmbl_13100	none	STRG.17065.1,STRG.17065.3,blat.proc3829895.chain_1814,blat.proc3829895.chain_1815,blat.proc3829895.chain_1816	5	STRG.17065.2,STRG.17065.4,blat.proc3829895.chain_1817	3
scaffold_21	starts_in_intron	385260	385260	-	asmbl_27330	none	blat.proc3829899.chain_748	1	STRG.23716.1,STRG.23716.2,Trinity_GG_30220_c0_g1_i1,blat.proc3829899.chain_747	4
scaffold_24	retained_exon	7734049	7734093	-	asmbl_33043,asmbl_33045	none	STRG.26803.1,Trinity_GG_32007_c0_g1_i4	2	STRG.26803.2	1
scaffold_5	ends_in_intron	5869317	5869317	+	asmbl_44037	none	blat.proc3829873.chain_2053	1	STRG.6002.1,blat.proc3829873.chain_2054	2
scaffold_9	skipped_exon	4898798	4899430	+	asmbl_53950	none	STRG.11053.2	1	blat.proc3829875.chain_3518	1
scaffold_12	spliced_intron	7392698	7392862	-	asmbl_7705	none	STRG.14814.1,blat.proc3829893.chain_3231	2	blat.proc3829893.chain_3229	1
scaffold_3	retained_intron	14519626	14519705	-	asmbl_39337	none	Trinity_GG_19119_c0_g1_i4,blat.proc3829887.chain_3618	2	STRG.3789.1,Trinity_GG_19119_c0_g1_i2,Trinity_GG_19119_c0_g1_i5,blat.proc3829887.chain_3617,blat.proc3829887.chain_3619	5
scaffold_7	spliced_intron	12386811	12386895	-	asmbl_50015	none	blat.proc3829891.chain_1531	1	blat.proc3829891.chain_1536	1
scaffold_1	alt_acceptor	22370558	22370559	+	asmbl_2676,asmbl_2677,asmbl_2679	none	STRG.1490.1,STRG.1490.2,STRG.1490.5	3	STRG.1490.3,STRG.1490.4	2
scaffold_19	retained_exon	6407888	6407947	-	asmbl_21424	none	STRG.22157.3,blat.proc3829897.chain_2844	2	blat.proc3829897.chain_2842	1
scaffold_16	spliced_intron	205536	205755	+	asmbl_16792	none	Trinity_GG_10416_c0_g1_i2,blat.proc3829879.chain_3610	2	STRG.18998.1,Trinity_GG_10416_c0_g1_i1,Trinity_GG_10416_c0_g1_i3,blat.proc3829879.chain_3611,blat.proc3829879.chain_3612	5
scaffold_27	ends_in_intron	635014	635014	-	asmbl_36660,asmbl_36661	none	blat.proc3829901.chain_1758	1	STRG.28565.1,blat.proc3829901.chain_1759	2
scaffold_6	alt_acceptor	14197731	14197732	+	asmbl_47530	none	STRG.8178.2,blat.proc3829875.chain_525	2	STRG.8178.1,Trinity_GG_4445_c0_g1_i3,blat.proc3829875.chain_526,blat.proc3829875.chain_527	4
scaffold_1555	skipped_exon	101	1310	-	asmbl_15981	none	STRG.30598.1	1	STRG.30598.2	1
scaffold_2	alt_acceptor	16285411	16285412	+	asmbl_25138	none	STRG.2560.2,blat.proc3829871.chain_2743	2	STRG.2560.1,blat.proc3829871.chain_2742,blat.proc3829871.chain_2744	3
scaffold_2	retained_exon	4625159	4625170	+	asmbl_24393	none	blat.proc3829871.chain_1901	1	STRG.1886.1	1
scaffold_19	spliced_intron	12574951	12575421	-	asmbl_21729,asmbl_21732	none	STRG.22574.2,STRG.22574.3,blat.proc3829897.chain_3225	3	blat.proc3829897.chain_3224	1
scaffold_7	retained_exon	18784049	18784164	+	asmbl_51424,asmbl_51425	none	STRG.9691.2,STRG.9691.4	2	STRG.9691.5	1
scaffold_13	starts_in_intron	3735623	3735623	+	asmbl_10718	none	blat.proc3829879.chain_391	1	STRG.15686.1,STRG.15686.2,STRG.15686.3,Trinity_GG_8631_c0_g1_i4,Trinity_GG_8631_c0_g1_i8,blat.proc3829879.chain_389,blat.proc3829879.chain_390,blat.proc3829879.chain_393,blat.proc3829879.chain_394,blat.proc3829879.chain_396	10
scaffold_28	spliced_intron	7234745	7235090	+	asmbl_38340	none	blat.proc3829885.chain_2856	1	Trinity_GG_16492_c1_g1_i1,blat.proc3829885.chain_2857,blat.proc3829885.chain_2859	3
scaffold_10	alt_acceptor	6052473	6052474	+	asmbl_4502,asmbl_4509	none	STRG.12431.3,STRG.12431.4	2	STRG.12431.1,blat.proc3829877.chain_1066,blat.proc3829877.chain_1068,blat.proc3829877.chain_1071,blat.proc3829877.chain_1072,blat.proc3829877.chain_1073	6
scaffold_3	spliced_intron	13423924	13424030	-	asmbl_39212,asmbl_39217	none	STRG.3690.3,STRG.3690.5	2	STRG.3690.1	1
scaffold_10	starts_in_intron	11506320	11506320	+	asmbl_4743	none	Trinity_GG_7025_c0_g1_i4,blat.proc3829877.chain_1300	2	STRG.12794.1,blat.proc3829877.chain_1299,blat.proc3829877.chain_1301	3
scaffold_1	retained_intron	8643305	8643562	-	asmbl_481	none	blat.proc3829887.chain_455	1	STRG.572.1,STRG.572.2,STRG.572.3,blat.proc3829887.chain_454,blat.proc3829887.chain_456,blat.proc3829887.chain_457,blat.proc3829887.chain_458	7
scaffold_4	retained_intron	12457553	12457685	+	asmbl_43059	none	blat.proc3829873.chain_1226	1	STRG.4879.1,blat.proc3829873.chain_1225	2
scaffold_22	starts_in_intron	7895750	7895750	-	asmbl_30204	none	blat.proc3829899.chain_2226	1	STRG.25124.1,STRG.25124.2,blat.proc3829899.chain_2225,blat.proc3829899.chain_2228	4
scaffold_17	spliced_intron	1512991	1513501	-	asmbl_18763,asmbl_18766	none	STRG.19976.1,blat.proc3829897.chain_951,blat.proc3829897.chain_952	3	Trinity_GG_28232_c1_g1_i1,blat.proc3829897.chain_953	2
scaffold_10	alt_acceptor	5824132	5824133	+	asmbl_4486	none	STRG.12397.3,Trinity_GG_6884_c0_g1_i2,blat.proc3829877.chain_1048	3	STRG.12397.2,Trinity_GG_6884_c0_g1_i4,blat.proc3829877.chain_1050	3
scaffold_22	alt_acceptor	4578373	4578374	+	asmbl_29317,asmbl_29323	none	STRG.24871.1,blat.proc3829883.chain_1895,blat.proc3829883.chain_1897	3	blat.proc3829883.chain_1899	1
scaffold_11	spliced_intron	7091036	7091125	+	asmbl_5622	none	STRG.13727.1,blat.proc3829877.chain_2203	2	blat.proc3829877.chain_2204	1
scaffold_19	alt_acceptor	11399598	11399599	+	asmbl_22499	none	STRG.22456.2	1	STRG.22456.1,Trinity_GG_12421_c0_g1_i2,blat.proc3829881.chain_3392	3
scaffold_5	alt_donor	4865673	4865674	+	asmbl_43976	none	STRG.5938.1,blat.proc3829873.chain_2137	2	Trinity_GG_3273_c0_g1_i4,blat.proc3829873.chain_2136	2
scaffold_14	alt_donor	3588309	3588310	+	asmbl_11928,asmbl_11930	none	STRG.16927.1,blat.proc3829879.chain_1656,blat.proc3829879.chain_1658	3	STRG.16927.2,STRG.16927.3,STRG.16927.4,blat.proc3829879.chain_1657	4
scaffold_25	spliced_intron	3709933	3710091	+	asmbl_33453	none	STRG.27304.2,Trinity_GG_15039_c0_g1_i2,blat.proc3829885.chain_306	3	STRG.27304.1,Trinity_GG_15039_c0_g1_i1,blat.proc3829885.chain_307,blat.proc3829885.chain_308	4
scaffold_8	alt_acceptor	18085228	18085229	-	asmbl_53514,asmbl_53515	none	STRG.10701.2,Trinity_GG_22907_c0_g1_i2,blat.proc3829891.chain_2754	3	STRG.10701.1,STRG.10701.3,Trinity_GG_22907_c0_g1_i1,Trinity_GG_22907_c0_g1_i4,Trinity_GG_22907_c0_g1_i6,blat.proc3829891.chain_2753,blat.proc3829891.chain_2755,blat.proc3829891.chain_2756	8
scaffold_15	alt_donor	6783940	6783941	-	asmbl_15268	none	STRG.18284.1,blat.proc3829895.chain_3037	2	blat.proc3829895.chain_3038	1
scaffold_3	retained_intron	14186470	14186940	-	asmbl_39279	none	STRG.3759.4,Trinity_GG_19089_c0_g1_i1,blat.proc3829887.chain_3545	3	STRG.3759.1,STRG.3759.2,STRG.3759.3,STRG.3759.5,Trinity_GG_19089_c0_g1_i5,blat.proc3829887.chain_3542,blat.proc3829887.chain_3546	7
scaffold_7	alt_donor	11224893	11224894	-	asmbl_49969	none	blat.proc3829891.chain_1432	1	STRG.9257.1,blat.proc3829891.chain_1433	2
scaffold_5	starts_in_intron	12926970	12926970	-	asmbl_45875	none	blat.proc3829889.chain_2594	1	STRG.6510.1,Trinity_GG_20676_c0_g1_i2,blat.proc3829889.chain_2595	3
scaffold_18	retained_intron	2394215	2394398	-	asmbl_19760	none	STRG.21108.2,Trinity_GG_28850_c0_g1_i4,blat.proc3829897.chain_2019,blat.proc3829897.chain_2020	4	STRG.21108.1,blat.proc3829897.chain_2018	2
scaffold_24	spliced_intron	727022	727258	-	asmbl_32698,asmbl_32700	none	STRG.26335.1,blat.proc3829899.chain_3400,blat.proc3829899.chain_3401	3	blat.proc3829899.chain_3399	1
scaffold_13	retained_exon	5736655	5736750	-	asmbl_9680	none	blat.proc3829895.chain_639	1	STRG.15867.1,blat.proc3829895.chain_640	2
scaffold_23	ends_in_intron	4100043	4100043	-	asmbl_31555	none	blat.proc3829899.chain_2935	1	STRG.25802.3,blat.proc3829899.chain_2934,blat.proc3829899.chain_2937	3
scaffold_5	retained_exon	13807787	13807804	-	asmbl_45938,asmbl_45941	none	STRG.6592.1,blat.proc3829889.chain_2652,blat.proc3829889.chain_2653	3	STRG.6592.2,blat.proc3829889.chain_2655	2
scaffold_26	alt_acceptor	3268091	3268092	+	asmbl_35301	none	STRG.27995.3	1	STRG.27995.2,blat.proc3829885.chain_957,blat.proc3829885.chain_958	3
scaffold_1	spliced_intron	5962385	5962489	-	asmbl_308,asmbl_310	none	STRG.395.1,blat.proc3829887.chain_270,blat.proc3829887.chain_271	3	blat.proc3829887.chain_272,blat.proc3829887.chain_273	2
scaffold_6	alt_donor	12899656	12899657	+	asmbl_47378,asmbl_47379	none	STRG.8040.1,STRG.8040.2,blat.proc3829875.chain_412	3	STRG.8040.3	1
scaffold_17	alt_acceptor	8317549	8317550	+	asmbl_18094,asmbl_18095,asmbl_18099	none	STRG.20443.2,STRG.20443.3,blat.proc3829881.chain_1251	3	blat.proc3829881.chain_1250	1
scaffold_9	alternate_exon	12336068	12337233	-	asmbl_55337	none	STRG.11544.1	1	STRG.11544.2	1
scaffold_6	alternate_exon	14137962	14139851	+	asmbl_47521	none	STRG.8170.1,blat.proc3829875.chain_553	2	STRG.8170.2	1
scaffold_2	alt_donor	13398120	13398121	+	asmbl_24875	none	Trinity_GG_1292_c0_g1_i5,blat.proc3829871.chain_2409	2	STRG.2357.2,STRG.2357.3,blat.proc3829871.chain_2405,blat.proc3829871.chain_2406,blat.proc3829871.chain_2407	5
scaffold_9	ends_in_intron	13306974	13306974	-	asmbl_55394	none	blat.proc3829891.chain_3710	1	STRG.11618.1,STRG.11618.2,blat.proc3829891.chain_3709	3
scaffold_15	starts_in_intron	13201981	13201981	-	asmbl_15636	none	STRG.18747.1,blat.proc3829895.chain_3496	2	STRG.18747.2,blat.proc3829895.chain_3497	2
scaffold_10	spliced_intron	13767257	13767588	+	asmbl_4887	none	STRG.12958.1,Trinity_GG_7138_c0_g1_i2,blat.proc3829877.chain_1514	3	Trinity_GG_7138_c0_g1_i1,blat.proc3829877.chain_1515	2
scaffold_11	retained_intron	14532679	14532928	+	asmbl_6068,asmbl_6069,asmbl_6070,asmbl_6071,asmbl_6072	none	STRG.14239.2,STRG.14239.4,Trinity_GG_7860_c0_g1_i7,blat.proc3829877.chain_2743,blat.proc3829877.chain_2744,blat.proc3829877.chain_2746,blat.proc3829877.chain_2748	7	STRG.14239.1,Trinity_GG_7860_c0_g1_i2,blat.proc3829877.chain_2747	3
scaffold_28	retained_exon	5027609	5027705	+	asmbl_38258,asmbl_38259,asmbl_38260,asmbl_38266	none	STRG.29640.1,STRG.29640.2,STRG.29640.3,Trinity_GG_16373_c2_g1_i2,blat.proc3829885.chain_2640,blat.proc3829885.chain_2641,blat.proc3829885.chain_2642	7	Trinity_GG_16373_c2_g1_i5,blat.proc3829885.chain_2644	2
scaffold_12	alt_donor	1726987	1726988	-	asmbl_7435	none	STRG.14458.2,blat.proc3829893.chain_2854	2	STRG.14458.1	1
scaffold_21	retained_intron	10120864	10120890	+	asmbl_28869	none	Trinity_GG_13526_c1_g1_i1,Trinity_GG_13526_c1_g1_i2,blat.proc3829883.chain_1543	3	STRG.24463.1	1
scaffold_4	alt_acceptor	12341917	12341918	-	asmbl_41642	none	STRG.4867.2,blat.proc3829889.chain_934	2	STRG.4867.1,blat.proc3829889.chain_933	2
scaffold_5	retained_exon	17194625	17194725	+	asmbl_44803	none	STRG.6883.2	1	STRG.6883.1	1
scaffold_8	starts_in_intron	4219049	4219049	+	asmbl_51809	none	Trinity_GG_5514_c0_g1_i2,blat.proc3829875.chain_2397	2	STRG.9889.1,blat.proc3829875.chain_2396	2
scaffold_3	retained_intron	14177620	14177901	-	asmbl_39274	none	Trinity_GG_19082_c0_g1_i2,blat.proc3829887.chain_3534	2	STRG.3749.1,blat.proc3829887.chain_3533	2
scaffold_3	alt_acceptor	14393543	14393544	+	asmbl_40478	none	STRG.3777.1,Trinity_GG_2118_c0_g1_i1,blat.proc3829873.chain_176	3	STRG.3777.2	1
scaffold_14	skipped_exon	16030712	16033484	+	asmbl_12643	none	STRG.17830.1	1	STRG.17830.2,blat.proc3829879.chain_2486	2
scaffold_24	retained_exon	6225856	6225904	-	asmbl_32933,asmbl_32934	none	STRG.26664.1,Trinity_GG_31899_c0_g1_i6,blat.proc3829899.chain_3686,blat.proc3829899.chain_3688	4	Trinity_GG_31899_c0_g1_i9,blat.proc3829899.chain_3692	2
scaffold_8	retained_intron	11243691	11244097	+	asmbl_52193	none	Trinity_GG_5749_c0_g1_i2,Trinity_GG_5749_c0_g1_i3,blat.proc3829875.chain_2843,blat.proc3829875.chain_2844	4	STRG.10324.1,blat.proc3829875.chain_2845	2
scaffold_14	alt_acceptor	8695572	8695573	-	asmbl_13319,asmbl_13322	none	STRG.17289.2,blat.proc3829895.chain_2017	2	blat.proc3829895.chain_2018	1
scaffold_5	alt_donor	8134924	8134925	+	asmbl_44196	none	STRG.6171.1,blat.proc3829873.chain_2334	2	STRG.6171.2,blat.proc3829873.chain_2332	2
scaffold_21	retained_exon	6512237	6512322	+	asmbl_28678	none	STRG.24161.1,blat.proc3829883.chain_1336	2	blat.proc3829883.chain_1337	1
scaffold_4	ends_in_intron	12372365	12372365	-	asmbl_41651	none	blat.proc3829889.chain_948	1	STRG.4872.1,blat.proc3829889.chain_947,blat.proc3829889.chain_949	3
scaffold_3	alternate_exon	7641649	7641783	-	asmbl_38924	none	STRG.3352.1,blat.proc3829887.chain_3158	2	STRG.3352.2	1
scaffold_2	ends_in_intron	17483446	17483446	-	asmbl_23742	none	STRG.2633.2,blat.proc3829887.chain_2472	2	STRG.2633.1,blat.proc3829887.chain_2473	2
scaffold_12	starts_in_intron	7276205	7276205	-	asmbl_7695	none	blat.proc3829893.chain_3178	1	STRG.14787.1,STRG.14787.2,STRG.14787.3,Trinity_GG_25259_c0_g1_i1,Trinity_GG_25259_c0_g1_i3,blat.proc3829893.chain_3176,blat.proc3829893.chain_3177	7
scaffold_16	starts_in_intron	7229461	7229461	-	asmbl_16349	none	blat.proc3829897.chain_420	1	STRG.19382.3,STRG.19382.6,STRG.19382.7	3
scaffold_26	alt_acceptor	10121617	10121618	-	asmbl_35086	none	STRG.28511.2,Trinity_GG_32936_c0_g1_i3,blat.proc3829901.chain_1635	3	STRG.28511.1,Trinity_GG_32936_c0_g1_i11,Trinity_GG_32936_c0_g1_i5,blat.proc3829901.chain_1633,blat.proc3829901.chain_1634	5
scaffold_16	alt_acceptor	3995827	3995828	+	asmbl_16951	none	STRG.19196.1,blat.proc3829881.chain_42	2	STRG.19196.2,STRG.19196.3,blat.proc3829881.chain_41	3
scaffold_5	alternate_exon	12544007	12545112	-	asmbl_45843,asmbl_45844	none	STRG.6491.1,STRG.6491.3,Trinity_GG_20662_c1_g1_i1,blat.proc3829889.chain_2575,blat.proc3829889.chain_2577	5	STRG.6491.2,blat.proc3829889.chain_2576	2
scaffold_2	starts_in_intron	10877681	10877681	+	asmbl_24771	none	Trinity_GG_1275_c0_g1_i6,blat.proc3829871.chain_2376	2	STRG.2242.1,STRG.2242.2,blat.proc3829871.chain_2373,blat.proc3829871.chain_2377	4
scaffold_11	retained_intron	15653766	15653915	-	asmbl_7183	none	blat.proc3829893.chain_2730	1	STRG.14297.1,STRG.14297.2,blat.proc3829893.chain_2729,blat.proc3829893.chain_2731,blat.proc3829893.chain_2732,blat.proc3829893.chain_2733,blat.proc3829893.chain_2736,blat.proc3829893.chain_2737	8
scaffold_19	alt_donor	12958338	12958339	-	asmbl_21779	none	STRG.22600.1	1	Trinity_GG_29572_c0_g1_i6,Trinity_GG_29572_c0_g1_i7,blat.proc3829897.chain_3292,blat.proc3829897.chain_3295	4
scaffold_18	alt_donor	5985312	5985313	+	asmbl_20679	none	blat.proc3829881.chain_2204	1	blat.proc3829881.chain_2206,blat.proc3829881.chain_2207,blat.proc3829881.chain_2208,blat.proc3829881.chain_2209	4
scaffold_7	alt_donor	18783530	18783531	+	asmbl_51423,asmbl_51425,asmbl_51426	none	STRG.9691.1,STRG.9691.3,STRG.9691.4	3	STRG.9691.2,STRG.9691.5,blat.proc3829875.chain_2056	3
scaffold_12	retained_exon	14104510	14104564	-	asmbl_8112,asmbl_8113	none	Trinity_GG_25546_c0_g1_i2,blat.proc3829893.chain_3678,blat.proc3829893.chain_3679	3	STRG.15225.1,Trinity_GG_25546_c0_g1_i1,Trinity_GG_25546_c0_g1_i5,blat.proc3829893.chain_3674,blat.proc3829893.chain_3675,blat.proc3829893.chain_3682	6
scaffold_22	starts_in_intron	4287128	4287128	-	asmbl_30002	none	STRG.24837.2,blat.proc3829899.chain_1952	2	STRG.24837.1,STRG.24837.3,blat.proc3829899.chain_1953,blat.proc3829899.chain_1955,blat.proc3829899.chain_1956	5
scaffold_4	alt_acceptor	13415771	13415772	+	asmbl_43121,asmbl_43125	none	STRG.4972.1,blat.proc3829873.chain_1259,blat.proc3829873.chain_1260	3	STRG.4972.2	1
scaffold_17	alt_acceptor	13196233	13196234	-	asmbl_19406,asmbl_19407,asmbl_19409,asmbl_19410	none	STRG.20803.1,STRG.20803.2,blat.proc3829897.chain_1734,blat.proc3829897.chain_1736,blat.proc3829897.chain_1737	5	STRG.20803.3,STRG.20803.4,blat.proc3829897.chain_1733	3
scaffold_13	alt_donor	382052	382053	-	asmbl_9291,asmbl_9295	none	STRG.15421.1,STRG.15421.3,blat.proc3829895.chain_149	3	STRG.15421.4,blat.proc3829895.chain_150	2
scaffold_11	retained_exon	16485120	16485279	-	asmbl_7206	none	STRG.14329.3	1	STRG.14329.2	1
scaffold_10	alt_acceptor	6077386	6077387	-	asmbl_3348	none	STRG.12437.1	1	blat.proc3829893.chain_919	1
scaffold_1	retained_exon	7291912	7292019	-	asmbl_434	none	STRG.527.1,blat.proc3829887.chain_421	2	STRG.527.2	1
scaffold_22	ends_in_intron	10320714	10320714	+	asmbl_29646	none	Trinity_GG_13991_c0_g1_i2	1	STRG.25367.1,STRG.25367.2,STRG.25367.3	3
scaffold_17	alt_acceptor	4675034	4675035	-	asmbl_18923	none	blat.proc3829897.chain_1145	1	STRG.20188.1,blat.proc3829897.chain_1146	2
scaffold_17	retained_intron	14546294	14546320	+	asmbl_18528	none	STRG.20918.2,Trinity_GG_11505_c0_g1_i1,Trinity_GG_11505_c0_g1_i2,blat.proc3829881.chain_1765	4	STRG.20918.3,blat.proc3829881.chain_1763	2
scaffold_8	ends_in_intron	4889032	4889032	+	asmbl_51863	none	blat.proc3829875.chain_2370	1	STRG.9952.1,blat.proc3829875.chain_2367,blat.proc3829875.chain_2369	3
scaffold_14	alt_donor	921302	921303	+	asmbl_11754	none	STRG.16748.3	1	STRG.16748.1,STRG.16748.2,blat.proc3829879.chain_1453	3
scaffold_26	retained_intron	5042836	5042939	+	asmbl_35470	none	blat.proc3829883.chain_2396	1	STRG.28206.1,blat.proc3829885.chain_1156,blat.proc3829885.chain_1157,blat.proc3829885.chain_1158,blat.proc3829885.chain_1159,blat.proc3829885.chain_1162,blat.proc3829885.chain_1163,blat.proc3829885.chain_1164,blat.proc3829885.chain_1168,blat.proc3829885.chain_1169	10
scaffold_7	ends_in_intron	13807084	13807084	+	asmbl_51260,asmbl_51261	none	STRG.9479.1,STRG.9479.3	2	STRG.9479.2,STRG.9479.4	2
scaffold_6	alternate_exon	13275259	13280140	+	asmbl_47452	none	STRG.8085.3,blat.proc3829875.chain_490	2	STRG.8085.2,blat.proc3829875.chain_492	2
scaffold_6	alternate_exon	14509650	14509870	+	asmbl_47556	none	STRG.8202.2,Trinity_GG_4524_c2_g1_i1,blat.proc3829875.chain_638	3	STRG.8202.1,Trinity_GG_4524_c0_g1_i2,blat.proc3829875.chain_636	3
scaffold_20	starts_in_intron	10411746	10411746	+	asmbl_26118	none	Trinity_GG_13032_c0_g1_i1,blat.proc3829883.chain_666	2	STRG.23567.2	1
scaffold_11	spliced_intron	16755265	16755293	+	asmbl_6157	none	STRG.14357.1	1	Trinity_GG_7913_c0_g1_i1,blat.proc3829877.chain_2850	2
scaffold_6	alt_donor	2481514	2481515	-	asmbl_48077	none	blat.proc3829889.chain_3219	1	STRG.7236.1,blat.proc3829889.chain_3220,blat.proc3829889.chain_3223	3
scaffold_11	ends_in_intron	9724660	9724660	+	asmbl_5854	none	Trinity_GG_7707_c0_g1_i3,blat.proc3829877.chain_2469	2	STRG.13976.2,Trinity_GG_7707_c0_g1_i1,blat.proc3829877.chain_2468	3
scaffold_23	alternate_exon	7406584	7410485	+	asmbl_30989	none	STRG.26040.3,Trinity_GG_14367_c0_g1_i1	2	STRG.26040.2	1
scaffold_14	retained_exon	10019033	10019103	-	asmbl_13388	none	STRG.17358.4,blat.proc3829895.chain_2067	2	STRG.17358.2,blat.proc3829895.chain_2066	2
scaffold_1	starts_in_intron	11799730	11799730	-	asmbl_678	none	blat.proc3829887.chain_688	1	STRG.794.1,STRG.794.3,blat.proc3829887.chain_691,blat.proc3829887.chain_692	4
scaffold_15	starts_in_intron	6081325	6081325	-	asmbl_15253	none	blat.proc3829895.chain_3030	1	STRG.18259.1,blat.proc3829895.chain_3028,blat.proc3829895.chain_3029	3
scaffold_25	starts_in_intron	4451636	4451636	+	asmbl_33500	none	blat.proc3829885.chain_397	1	STRG.27357.1,Trinity_GG_15091_c0_g2_i1,blat.proc3829885.chain_398	3
scaffold_23	ends_in_intron	3595955	3595955	+	asmbl_30752	none	blat.proc3829883.chain_2581	1	STRG.25761.2	1
scaffold_24	skipped_exon	4280796	4281253	+	asmbl_32192	none	STRG.26568.3	1	STRG.26568.2,blat.proc3829883.chain_3465	2
scaffold_24	retained_intron	727022	727258	-	asmbl_32699	none	blat.proc3829899.chain_3399	1	STRG.26335.1,blat.proc3829899.chain_3400,blat.proc3829899.chain_3401	3
scaffold_21	alternate_exon	8131428	8139076	-	asmbl_27912,asmbl_27914	none	blat.proc3829899.chain_1383,blat.proc3829899.chain_1387	2	blat.proc3829899.chain_1384	1
scaffold_23	alt_donor	8206127	8206128	+	asmbl_31060,asmbl_31063	none	STRG.26112.1,blat.proc3829883.chain_2936,blat.proc3829883.chain_2937	3	STRG.26112.2,blat.proc3829883.chain_2938	2
scaffold_6	alternate_exon	17167195	17167219	+	asmbl_47674	none	Trinity_GG_4571_c0_g1_i1	1	blat.proc3829875.chain_710	1
scaffold_7	alt_acceptor	13806988	13806989	+	asmbl_51260	none	STRG.9479.3	1	STRG.9479.1,STRG.9479.2,STRG.9479.4	3
scaffold_1	starts_in_intron	5541233	5541233	+	asmbl_1723	none	blat.proc3829871.chain_337	1	STRG.342.1,blat.proc3829871.chain_338	2
scaffold_23	alt_donor	1673574	1673575	-	asmbl_31387	none	STRG.25622.2	1	STRG.25622.1,blat.proc3829899.chain_2731	2
scaffold_24	retained_intron	3655845	3656569	+	asmbl_32162	none	STRG.26528.5,Trinity_GG_14654_c0_g1_i1,blat.proc3829883.chain_3409	3	STRG.26528.4,Trinity_GG_14654_c0_g1_i3,blat.proc3829883.chain_3406	3
scaffold_8	ends_in_intron	11811033	11811033	+	asmbl_52257	none	blat.proc3829875.chain_2926	1	STRG.10378.1,blat.proc3829875.chain_2927,blat.proc3829875.chain_2928	3
scaffold_21	alt_acceptor	10965497	10965498	+	asmbl_28910	none	STRG.24559.3	1	STRG.24559.1,Trinity_GG_13542_c0_g1_i4,Trinity_GG_13542_c0_g1_i6,blat.proc3829883.chain_1566,blat.proc3829883.chain_1567,blat.proc3829883.chain_1568	6
scaffold_22	skipped_exon	214832	216306	+	asmbl_29113	none	STRG.24661.6	1	STRG.24661.2,STRG.24661.3,STRG.24661.5,blat.proc3829883.chain_1716,blat.proc3829883.chain_1717	5
scaffold_18	starts_in_intron	8594672	8594672	+	asmbl_20871	none	blat.proc3829881.chain_2518	1	STRG.21515.2	1
scaffold_13	retained_intron	2295238	2295321	+	asmbl_10561	none	blat.proc3829879.chain_256	1	STRG.15531.1,blat.proc3829879.chain_257,blat.proc3829879.chain_258	3
scaffold_9	spliced_intron	16559310	16560403	-	asmbl_55549	none	STRG.11797.5	1	STRG.11797.2,STRG.11797.3,STRG.11797.6,Trinity_GG_23481_c0_g1_i1,Trinity_GG_23481_c0_g2_i1,blat.proc3829893.chain_81,blat.proc3829893.chain_82	7
scaffold_14	alternate_exon	11059673	11059998	-	asmbl_13425	none	STRG.17425.2	1	STRG.17425.1,blat.proc3829895.chain_2091	2
scaffold_5	alt_acceptor	13112621	13112622	-	asmbl_45897	none	blat.proc3829889.chain_2598	1	STRG.6540.1,STRG.6540.2,blat.proc3829889.chain_2597	3
scaffold_15	alt_donor	9879883	9879884	+	asmbl_14377	none	STRG.18494.2	1	STRG.18494.1,blat.proc3829879.chain_3119	2
scaffold_11	retained_exon	3607603	3607716	-	asmbl_6535	none	STRG.13479.1,blat.proc3829893.chain_1926	2	STRG.13479.2,blat.proc3829893.chain_1927	2
scaffold_17	spliced_intron	1054282	1054550	-	asmbl_18711	none	STRG.19934.1	1	Trinity_GG_28199_c0_g1_i2,blat.proc3829897.chain_890	2
scaffold_1	retained_intron	13537791	13537907	-	asmbl_827	none	Trinity_GG_17468_c0_g1_i4,blat.proc3829887.chain_776	2	STRG.966.1,Trinity_GG_17468_c0_g1_i1,Trinity_GG_17468_c0_g1_i5,blat.proc3829887.chain_771,blat.proc3829887.chain_773,blat.proc3829887.chain_774	6
scaffold_12	spliced_intron	4290876	4291432	-	asmbl_7519	none	STRG.14591.1,blat.proc3829893.chain_2884	2	STRG.14591.2,blat.proc3829893.chain_2885	2
scaffold_1	alternate_exon	12930510	12930541	+	asmbl_2263	none	STRG.922.2,Trinity_GG_546_c0_g1_i2,blat.proc3829871.chain_979	3	STRG.922.1	1
scaffold_25	retained_exon	6770175	6770224	+	asmbl_33645	none	STRG.27525.2	1	STRG.27525.1	1
scaffold_2	spliced_intron	16414057	16414370	-	asmbl_23702,asmbl_23704,asmbl_23707	none	STRG.2585.1,blat.proc3829887.chain_2410,blat.proc3829887.chain_2411,blat.proc3829887.chain_2412	4	STRG.2585.3,blat.proc3829887.chain_2413	2
scaffold_3	alternate_exon	6183393	6184095	-	asmbl_38867	none	STRG.3262.4	1	STRG.3262.1,blat.proc3829887.chain_3017	2
scaffold_22	alt_donor	11477602	11477603	+	asmbl_29680	none	STRG.25476.3,Trinity_GG_14064_c0_g1_i3,blat.proc3829883.chain_2403	3	STRG.25476.2	1
scaffold_3	alt_donor	7591047	7591048	+	asmbl_40125	none	STRG.3345.1,blat.proc3829871.chain_3548	2	blat.proc3829871.chain_3547	1
scaffold_566	spliced_intron	3943	4024	+	asmbl_46538	none	blat.proc3829879.chain_709	1	Trinity_GG_16802_c0_g1_i7,blat.proc3829879.chain_708,blat.proc3829885.chain_3387	3
scaffold_24	retained_intron	6834417	6834757	+	asmbl_32359	none	blat.proc3829883.chain_3662	1	STRG.26717.1,STRG.26717.2,STRG.26717.4,blat.proc3829883.chain_3660,blat.proc3829883.chain_3661	5
scaffold_7	retained_intron	12279110	12279796	+	asmbl_51118	none	Trinity_GG_5173_c0_g1_i3,blat.proc3829875.chain_1778	2	STRG.9315.1,blat.proc3829875.chain_1776,blat.proc3829875.chain_1777,blat.proc3829875.chain_1779	4
scaffold_18	retained_intron	9804399	9804418	-	asmbl_20122,asmbl_20123	none	STRG.21582.1,STRG.21582.3,Trinity_GG_29051_c2_g1_i1	3	STRG.21582.2	1
scaffold_11	retained_intron	6252706	6253377	+	asmbl_5583	none	STRG.13670.3,Trinity_GG_7547_c1_g1_i1	2	STRG.13670.2,Trinity_GG_7547_c0_g1_i2,Trinity_GG_7547_c0_g1_i9,blat.proc3829877.chain_2179,blat.proc3829877.chain_2181,blat.proc3829877.chain_2183	6
scaffold_6	ends_in_intron	2885077	2885077	-	asmbl_48130	none	STRG.7277.2,blat.proc3829889.chain_3273	2	STRG.7277.1,blat.proc3829889.chain_3272	2
scaffold_21	starts_in_intron	11343554	11343554	+	asmbl_28937	none	Trinity_GG_13576_c0_g1_i1	1	blat.proc3829883.chain_1621	1
scaffold_17	alternate_exon	12384936	12385244	-	asmbl_19371,asmbl_19374,asmbl_19375	none	STRG.20776.1,STRG.20776.2,STRG.20776.4	3	STRG.20776.5,Trinity_GG_28651_c4_g1_i1,blat.proc3829897.chain_1640,blat.proc3829897.chain_1644	4
scaffold_15	skipped_exon	6883183	6884074	-	asmbl_15286	none	blat.proc3829895.chain_2933	1	STRG.18290.2,STRG.18290.3,STRG.18290.4,Trinity_GG_27246_c0_g1_i5,blat.proc3829895.chain_2934,blat.proc3829895.chain_2935,blat.proc3829895.chain_2936,blat.proc3829895.chain_2940	8
scaffold_5	starts_in_intron	14763559	14763559	-	asmbl_46001	none	blat.proc3829889.chain_2720	1	blat.proc3829889.chain_2719	1
scaffold_24	retained_intron	3763914	3764002	-	asmbl_32838	none	Trinity_GG_31847_c0_g1_i2,blat.proc3829899.chain_3596	2	STRG.26538.1,Trinity_GG_31847_c0_g1_i1,blat.proc3829899.chain_3597	3
scaffold_13	alt_acceptor	5339809	5339810	+	asmbl_10818,asmbl_10821	none	STRG.15817.1,blat.proc3829879.chain_512,blat.proc3829879.chain_514	3	STRG.15817.2,blat.proc3829879.chain_511	2
scaffold_28	ends_in_intron	2932647	2932647	-	asmbl_37434	none	Trinity_GG_33533_c2_g1_i1,blat.proc3829901.chain_2594	2	STRG.29467.2	1
scaffold_3	starts_in_intron	6662661	6662661	+	asmbl_40075	none	Trinity_GG_1863_c1_g1_i1,blat.proc3829871.chain_3476	2	STRG.3291.1,STRG.3291.2,STRG.3291.3,Trinity_GG_1863_c0_g1_i4,blat.proc3829871.chain_3474,blat.proc3829871.chain_3475	6
scaffold_9	spliced_intron	5473472	5473745	+	asmbl_54030,asmbl_54031,asmbl_54032	none	STRG.11113.1,STRG.11113.2,Trinity_GG_6198_c0_g1_i3,blat.proc3829875.chain_3610,blat.proc3829875.chain_3611	5	blat.proc3829875.chain_3612	1
scaffold_13	spliced_intron	1238200	1238338	+	asmbl_10514,asmbl_10515,asmbl_10517,asmbl_10518,asmbl_10520,asmbl_10521,asmbl_10526	none	STRG.15478.1,STRG.15478.2,STRG.15478.4,STRG.15478.5,STRG.15478.6,STRG.15478.7,Trinity_GG_8526_c0_g2_i3,blat.proc3829879.chain_204,blat.proc3829879.chain_205,blat.proc3829879.chain_207	10	blat.proc3829879.chain_208,blat.proc3829879.chain_209	2
scaffold_26	ends_in_intron	9531130	9531130	+	asmbl_35763	none	blat.proc3829885.chain_1509	1	STRG.28483.1,blat.proc3829885.chain_1508	2
scaffold_10	retained_intron	5849287	5849521	-	asmbl_3308,asmbl_3309	none	STRG.12395.1,STRG.12395.2,blat.proc3829893.chain_858	3	STRG.12395.3,blat.proc3829893.chain_857	2
scaffold_5	alt_acceptor	11639336	11639337	+	asmbl_44423	none	STRG.6414.2,Trinity_GG_3493_c0_g1_i1,blat.proc3829873.chain_2554	3	STRG.6414.3,Trinity_GG_3493_c0_g1_i2,blat.proc3829873.chain_2555	3
scaffold_15	spliced_intron	14891299	14891623	+	asmbl_14653,asmbl_14656	none	STRG.18890.2,STRG.18890.3,Trinity_GG_10355_c0_g1_i7,blat.proc3829879.chain_3462	4	STRG.18890.1,blat.proc3829879.chain_3464,blat.proc3829879.chain_3465	3
scaffold_9	retained_exon	4898459	4898797	+	asmbl_53950	none	STRG.11053.2	1	blat.proc3829875.chain_3518	1
scaffold_7	alt_acceptor	142035	142036	-	asmbl_49488	none	STRG.8584.1,blat.proc3829891.chain_936	2	STRG.8584.2	1
scaffold_22	spliced_intron	7893263	7893360	-	asmbl_30199	none	STRG.25122.1	1	STRG.25122.2,blat.proc3829899.chain_2219,blat.proc3829899.chain_2221	3
scaffold_22	retained_intron	647867	648211	+	asmbl_29171	none	STRG.24700.2,Trinity_GG_13653_c0_g1_i1,blat.proc3829883.chain_1749	3	STRG.24700.1,Trinity_GG_13653_c0_g1_i2,blat.proc3829883.chain_1750	3
scaffold_11	spliced_intron	8072873	8072982	-	asmbl_6800,asmbl_6801,asmbl_6803,asmbl_6804,asmbl_6805,asmbl_6806,asmbl_6811,asmbl_6815	none	STRG.13802.1,STRG.13802.2,Trinity_GG_24711_c0_g1_i18,Trinity_GG_24711_c0_g1_i3,Trinity_GG_24711_c0_g1_i9,blat.proc3829893.chain_2197,blat.proc3829893.chain_2199,blat.proc3829893.chain_2206,blat.proc3829893.chain_2209,blat.proc3829893.chain_2211	10	Trinity_GG_24711_c0_g1_i17,Trinity_GG_24711_c0_g1_i8,blat.proc3829893.chain_2204,blat.proc3829893.chain_2205	4
scaffold_8	retained_intron	9903716	9903809	-	asmbl_53062	none	Trinity_GG_22721_c0_g1_i5,blat.proc3829891.chain_2396	2	STRG.10235.1,Trinity_GG_22721_c0_g1_i2,blat.proc3829891.chain_2393,blat.proc3829891.chain_2394,blat.proc3829891.chain_2395	5
scaffold_2	alt_donor	2455198	2455199	-	asmbl_22921	none	STRG.1690.3	1	STRG.1690.1,blat.proc3829887.chain_1531	2
scaffold_8	retained_intron	7483592	7484153	-	asmbl_52906	none	Trinity_GG_22590_c0_g1_i4,blat.proc3829891.chain_2154	2	STRG.10067.1,blat.proc3829891.chain_2150,blat.proc3829891.chain_2151	3
scaffold_4	retained_intron	3383632	3383773	+	asmbl_42519,asmbl_42520	none	STRG.4269.3,blat.proc3829873.chain_585	2	STRG.4269.1,STRG.4269.2,blat.proc3829873.chain_584,blat.proc3829873.chain_586,blat.proc3829873.chain_587	5
scaffold_21	ends_in_intron	3172779	3172779	-	asmbl_27548	none	Trinity_GG_30345_c0_g1_i1,blat.proc3829899.chain_997	2	STRG.23946.1	1
scaffold_17	retained_intron	4185297	4186012	-	asmbl_18886	none	STRG.20157.3,Trinity_GG_28343_c0_g1_i2,Trinity_GG_28343_c2_g1_i1,blat.proc3829897.chain_1124,blat.proc3829897.chain_1128	5	STRG.20157.1,STRG.20157.2,blat.proc3829897.chain_1125,blat.proc3829897.chain_1126	4
scaffold_7	retained_intron	12649977	12650578	-	asmbl_50076	none	STRG.9370.2,blat.proc3829891.chain_1620	2	STRG.9370.1,blat.proc3829891.chain_1618	2
scaffold_13	alternate_exon	8894343	8895620	-	asmbl_9955	none	STRG.16142.2	1	STRG.16142.3,Trinity_GG_26083_c0_g1_i1,blat.proc3829895.chain_917	3
scaffold_28	alt_donor	5755662	5755663	+	asmbl_38299	none	STRG.29691.2,Trinity_GG_16456_c0_g1_i2,blat.proc3829885.chain_2800	3	STRG.29691.1,Trinity_GG_16456_c0_g1_i1,blat.proc3829885.chain_2799	3
scaffold_3	alternate_exon	11298979	11299130	+	asmbl_40295	none	STRG.3552.2,blat.proc3829871.chain_3750	2	STRG.3552.1,blat.proc3829871.chain_3749	2
scaffold_22	retained_intron	3782822	3783053	-	asmbl_29947	none	blat.proc3829899.chain_1895	1	blat.proc3829899.chain_1896	1
scaffold_7	alt_acceptor	286427	286428	+	asmbl_50430	none	STRG.8593.2	1	STRG.8593.1,Trinity_GG_4731_c0_g1_i3,Trinity_GG_4731_c0_g1_i6	3
scaffold_20	retained_exon	11672272	11672377	-	asmbl_27098,asmbl_27099	none	STRG.23656.3,STRG.23656.4,blat.proc3829899.chain_650,blat.proc3829899.chain_653	4	STRG.23656.1,blat.proc3829899.chain_652	2
scaffold_13	alternate_exon	7452950	7453086	+	asmbl_11042	none	STRG.16026.2	1	STRG.16026.1	1
scaffold_17	alt_donor	9689021	9689022	+	asmbl_18247	none	STRG.20576.2,Trinity_GG_11262_c0_g1_i1,blat.proc3829881.chain_1370	3	STRG.20576.1,STRG.20576.3,Trinity_GG_11262_c0_g1_i2,Trinity_GG_11262_c0_g1_i3,blat.proc3829881.chain_1371,blat.proc3829881.chain_1372	6
scaffold_397	starts_in_intron	1709	1709	-	asmbl_41034	none	Trinity_GG_33995_c0_g1_i1	1	STRG.30282.2	1
scaffold_8	spliced_intron	16505056	16505853	-	asmbl_53414,asmbl_53416,asmbl_53419,asmbl_53420,asmbl_53421,asmbl_53423,asmbl_53425,asmbl_53427,asmbl_53429,asmbl_53430	none	STRG.10621.1,STRG.10621.3,STRG.10621.4,Trinity_GG_22960_c0_g1_i27,Trinity_GG_22960_c0_g1_i5,blat.proc3829891.chain_2855,blat.proc3829891.chain_2859,blat.proc3829891.chain_2862,blat.proc3829891.chain_2865,blat.proc3829891.chain_2867,blat.proc3829891.chain_2868,blat.proc3829891.chain_2871	12	Trinity_GG_22960_c0_g1_i21,Trinity_GG_22960_c0_g1_i22,blat.proc3829891.chain_2863,blat.proc3829891.chain_2870	4
scaffold_13	alt_acceptor	732828	732829	+	asmbl_10475,asmbl_10477	none	STRG.15444.1,STRG.15444.3,blat.proc3829879.chain_108	3	STRG.15444.2	1
scaffold_11	alt_donor	2843681	2843682	+	asmbl_5343,asmbl_5344	none	STRG.13415.1,STRG.13415.2,Trinity_GG_7336_c0_g1_i1,Trinity_GG_7336_c0_g1_i2,blat.proc3829877.chain_1839,blat.proc3829877.chain_1840	6	STRG.13415.3	1
scaffold_10	alternate_exon	9543831	9546458	+	asmbl_4676	none	STRG.12692.2,blat.proc3829877.chain_1283	2	Trinity_GG_7015_c0_g1_i7,blat.proc3829877.chain_1284	2
scaffold_23	spliced_intron	4315627	4315866	+	asmbl_30800	none	STRG.25826.1,blat.proc3829883.chain_2716	2	blat.proc3829883.chain_2710,blat.proc3829883.chain_2718	2
scaffold_1	retained_exon	3498449	3498541	-	asmbl_146,asmbl_149,asmbl_151,asmbl_152,asmbl_153,asmbl_154,asmbl_155,asmbl_158	none	STRG.217.1,STRG.217.2,blat.proc3829887.chain_114,blat.proc3829887.chain_116,blat.proc3829887.chain_118,blat.proc3829887.chain_119,blat.proc3829887.chain_121,blat.proc3829887.chain_123,blat.proc3829887.chain_124	9	STRG.217.3,blat.proc3829887.chain_117,blat.proc3829887.chain_120,blat.proc3829887.chain_125	4
scaffold_2	retained_intron	7781346	7781544	+	asmbl_24606,asmbl_24607,asmbl_24610	none	STRG.2076.3,STRG.2076.5,STRG.2076.6,blat.proc3829871.chain_2209	4	blat.proc3829871.chain_2207	1
scaffold_4	starts_in_intron	17573289	17573289	-	asmbl_42034	none	STRG.5346.3,blat.proc3829889.chain_1330	2	STRG.5346.1,STRG.5346.4	2
scaffold_21	alt_donor	11346263	11346264	-	asmbl_28147	none	STRG.24599.2	1	STRG.24599.3	1
scaffold_11	starts_in_intron	3763806	3763806	+	asmbl_5422	none	blat.proc3829877.chain_1920	1	STRG.13487.1,STRG.13487.2,STRG.13487.3,blat.proc3829877.chain_1919	4
scaffold_14	retained_intron	9273611	9273885	-	asmbl_13347,asmbl_13349	none	blat.proc3829895.chain_1994,blat.proc3829895.chain_1998	2	STRG.17323.1,blat.proc3829895.chain_1995,blat.proc3829895.chain_1996,blat.proc3829895.chain_1997	4
scaffold_6	starts_in_intron	17883544	17883544	-	asmbl_49146	none	Trinity_GG_21830_c0_g1_i3,blat.proc3829891.chain_764	2	STRG.8474.1,STRG.8474.3,STRG.8474.4,Trinity_GG_21830_c0_g1_i2,blat.proc3829891.chain_767	5
scaffold_11	alternate_exon	8102877	8103388	+	asmbl_5695	none	Trinity_GG_7614_c1_g1_i5,blat.proc3829877.chain_2302	2	STRG.13811.4	1
scaffold_16	alt_donor	10448911	10448912	+	asmbl_17335	none	STRG.19602.1,Trinity_GG_10708_c0_g1_i3,Trinity_GG_10708_c1_g1_i1,blat.proc3829881.chain_423,blat.proc3829881.chain_427	5	STRG.19602.4	1
scaffold_23	alt_acceptor	5584092	5584093	+	asmbl_30881,asmbl_30882,asmbl_30884	none	STRG.25912.1,STRG.25912.3,STRG.25912.4,Trinity_GG_14263_c0_g1_i1,blat.proc3829883.chain_2728,blat.proc3829883.chain_2729	6	STRG.25912.2	1
scaffold_9	alt_acceptor	11889804	11889805	+	asmbl_54376,asmbl_54378	none	STRG.11505.1,blat.proc3829877.chain_291	2	STRG.11505.2	1
scaffold_10	starts_in_intron	1490321	1490321	-	asmbl_2975	none	blat.proc3829893.chain_393	1	STRG.12017.1,STRG.12017.2,STRG.12017.3,blat.proc3829893.chain_389,blat.proc3829893.chain_390,blat.proc3829893.chain_392,blat.proc3829893.chain_394,blat.proc3829893.chain_395	8
scaffold_8	starts_in_intron	4836564	4836564	-	asmbl_52794	none	STRG.9938.1,blat.proc3829891.chain_2096	2	STRG.9938.2,blat.proc3829891.chain_2094	2
scaffold_6	retained_exon	18922548	18922655	-	asmbl_49225	none	STRG.8554.1,blat.proc3829891.chain_893	2	STRG.8554.2	1
scaffold_20	spliced_intron	1469616	1470058	-	asmbl_26505	none	STRG.22854.1,blat.proc3829897.chain_3657	2	blat.proc3829897.chain_3656	1
scaffold_11	retained_exon	6063857	6063910	+	asmbl_5572	none	blat.proc3829877.chain_2093	1	STRG.13658.1,blat.proc3829877.chain_2094	2
scaffold_15	spliced_intron	5454907	5455211	-	asmbl_15217,asmbl_15218,asmbl_15222,asmbl_15223,asmbl_15225	none	STRG.18219.1,STRG.18219.2,STRG.18219.3,Trinity_GG_27252_c0_g1_i10,Trinity_GG_27252_c0_g1_i2,blat.proc3829895.chain_2953,blat.proc3829895.chain_2954,blat.proc3829895.chain_2955,blat.proc3829895.chain_2956,blat.proc3829895.chain_2957	10	blat.proc3829895.chain_2952	1
scaffold_27	retained_intron	2824529	2824739	-	asmbl_36813	none	blat.proc3829901.chain_1860	1	STRG.28744.1,blat.proc3829901.chain_1861,blat.proc3829901.chain_1862	3
scaffold_21	spliced_intron	7286601	7286692	-	asmbl_27812,asmbl_27813	none	STRG.24234.1,STRG.24234.3,Trinity_GG_30523_c0_g1_i1,Trinity_GG_30523_c0_g1_i2,blat.proc3829899.chain_1301,blat.proc3829899.chain_1302	6	STRG.24234.2	1
scaffold_22	spliced_intron	7972285	7972608	+	asmbl_29539	none	STRG.25136.3	1	STRG.25136.4,Trinity_GG_13926_c0_g1_i3,blat.proc3829883.chain_2205	3
scaffold_14	alternate_exon	9294393	9294437	-	asmbl_13359	none	blat.proc3829895.chain_2050	1	STRG.17324.1,STRG.17324.2,STRG.17324.3,STRG.17324.4,blat.proc3829895.chain_2044,blat.proc3829895.chain_2046,blat.proc3829895.chain_2047,blat.proc3829895.chain_2048,blat.proc3829895.chain_2049,blat.proc3829895.chain_2051,blat.proc3829895.chain_2052	11
scaffold_25	starts_in_intron	4540233	4540233	+	asmbl_33510	none	Trinity_GG_15099_c0_g1_i2,blat.proc3829885.chain_413	2	STRG.27374.1,blat.proc3829885.chain_414	2
scaffold_28	alternate_exon	5755310	5755418	-	asmbl_37644	none	STRG.29690.1,Trinity_GG_33662_c0_g1_i1,blat.proc3829901.chain_2819	3	STRG.29690.2	1
scaffold_3	alt_donor	15745413	15745414	-	asmbl_39389	none	blat.proc3829887.chain_3580	1	STRG.3850.1,blat.proc3829887.chain_3578,blat.proc3829887.chain_3579,blat.proc3829887.chain_3581	4
scaffold_9	starts_in_intron	9412348	9412348	-	asmbl_55135	none	Trinity_GG_23291_c1_g1_i2,blat.proc3829891.chain_3483	2	STRG.11291.1,blat.proc3829891.chain_3484,blat.proc3829891.chain_3485,blat.proc3829891.chain_3486	4
scaffold_8	spliced_intron	6317858	6317977	-	asmbl_52870,asmbl_52871	none	STRG.10031.1,blat.proc3829891.chain_2198	2	Trinity_GG_22617_c0_g1_i4,blat.proc3829891.chain_2196	2
scaffold_15	alt_donor	7804187	7804188	-	asmbl_15333	none	blat.proc3829895.chain_3110	1	STRG.18350.1,Trinity_GG_27330_c1_g1_i1,blat.proc3829895.chain_3109,blat.proc3829895.chain_3111	4
scaffold_11	alt_acceptor	10978088	10978089	-	asmbl_6984	none	STRG.14050.2,blat.proc3829893.chain_2453	2	STRG.14050.1,blat.proc3829893.chain_2452	2
scaffold_26	retained_intron	10097149	10097600	-	asmbl_35080,asmbl_35084	none	Trinity_GG_32937_c0_g1_i3,blat.proc3829901.chain_1637,blat.proc3829901.chain_1639	3	STRG.28512.1,blat.proc3829901.chain_1638	2
scaffold_14	retained_intron	13217591	13219618	+	asmbl_12441	none	STRG.17599.2,blat.proc3829879.chain_2266	2	STRG.17599.1,STRG.17599.3,STRG.17599.4	3
scaffold_27	starts_in_intron	2786027	2786027	+	asmbl_36065	none	blat.proc3829885.chain_1756	1	STRG.28736.1,blat.proc3829885.chain_1753,blat.proc3829885.chain_1755	3
scaffold_15	skipped_exon	7181904	7183428	-	asmbl_15294,asmbl_15297	none	STRG.18300.1,STRG.18300.4,blat.proc3829895.chain_2962,blat.proc3829895.chain_2964	4	STRG.18300.2,blat.proc3829895.chain_2965	2
scaffold_9	starts_in_intron	5279031	5279031	+	asmbl_53996	none	blat.proc3829875.chain_3589	1	STRG.11095.1,STRG.11095.3	2
scaffold_15	alternate_exon	6884460	6890332	-	asmbl_15276,asmbl_15278,asmbl_15280,asmbl_15282,asmbl_15285,asmbl_15287	none	STRG.18290.1,STRG.18290.3,STRG.18290.5,STRG.18290.6,Trinity_GG_27246_c0_g1_i5,blat.proc3829895.chain_2935,blat.proc3829895.chain_2937,blat.proc3829895.chain_2939,blat.proc3829895.chain_2942	9	STRG.18290.4,Trinity_GG_27246_c0_g1_i4,Trinity_GG_27246_c1_g1_i1,blat.proc3829895.chain_2938,blat.proc3829895.chain_2941,blat.proc3829895.chain_2943	6
scaffold_8	retained_exon	8739602	8739721	+	asmbl_52014	none	Trinity_GG_5631_c0_g1_i1,blat.proc3829875.chain_2634	2	Trinity_GG_5631_c0_g1_i2,blat.proc3829875.chain_2635	2
scaffold_23	retained_exon	8102329	8102386	+	asmbl_31055	none	STRG.26106.2	1	STRG.26106.1	1
scaffold_27	ends_in_intron	2767086	2767086	-	asmbl_36804,asmbl_36806	none	Trinity_GG_33102_c0_g1_i3,blat.proc3829901.chain_1925,blat.proc3829901.chain_1927	3	STRG.28738.1,blat.proc3829901.chain_1926	2
scaffold_7	retained_exon	8296346	8296440	-	asmbl_49807	none	STRG.9056.4,blat.proc3829891.chain_1237	2	STRG.9056.1,blat.proc3829891.chain_1235	2
scaffold_15	starts_in_intron	14320190	14320190	+	asmbl_14625	none	Trinity_GG_10309_c0_g1_i1,blat.proc3829879.chain_3377	2	STRG.18854.1,blat.proc3829879.chain_3378	2
scaffold_8	spliced_intron	8969632	8969801	-	asmbl_52976,asmbl_52977	none	STRG.10140.1,STRG.10140.2,blat.proc3829891.chain_2309,blat.proc3829891.chain_2312	4	blat.proc3829891.chain_2311	1
scaffold_27	starts_in_intron	3644951	3644951	-	asmbl_36869	none	blat.proc3829901.chain_2008	1	STRG.28814.1,STRG.28814.2,Trinity_GG_33152_c0_g1_i2,blat.proc3829901.chain_2006,blat.proc3829901.chain_2007	5
scaffold_8	alt_acceptor	9374182	9374183	-	asmbl_53022	none	STRG.10194.5	1	STRG.10194.3,STRG.10194.4,STRG.10194.6,blat.proc3829891.chain_2355,blat.proc3829891.chain_2356,blat.proc3829891.chain_2358	6
scaffold_23	skipped_exon	8066122	8068406	-	asmbl_31789	none	STRG.26099.1,blat.proc3829899.chain_3134	2	STRG.26099.2,blat.proc3829899.chain_3135	2
scaffold_6	starts_in_intron	3813895	3813895	-	asmbl_48225	none	STRG.7380.2,blat.proc3829889.chain_3310	2	STRG.7380.1,blat.proc3829889.chain_3309	2
scaffold_23	spliced_intron	5861645	5861736	-	asmbl_31671,asmbl_31673	none	STRG.25948.1,Trinity_GG_31529_c0_g1_i3,Trinity_GG_31529_c0_g1_i4,blat.proc3829899.chain_3062,blat.proc3829899.chain_3063	5	Trinity_GG_31529_c0_g1_i2,blat.proc3829899.chain_3061	2
scaffold_6	spliced_intron	9585760	9586086	+	asmbl_47166	none	STRG.7802.1,blat.proc3829875.chain_206	2	Trinity_GG_4292_c0_g2_i1,blat.proc3829875.chain_207	2
scaffold_10	skipped_exon	6052141	6054671	+	asmbl_4501	none	STRG.12431.2,blat.proc3829877.chain_1065,blat.proc3829877.chain_1067	3	STRG.12431.1,STRG.12431.3,STRG.12431.4,blat.proc3829877.chain_1066,blat.proc3829877.chain_1068,blat.proc3829877.chain_1071,blat.proc3829877.chain_1072,blat.proc3829877.chain_1073	8
scaffold_21	alt_donor	8278443	8278444	+	asmbl_28818	none	blat.proc3829883.chain_1472	1	STRG.24353.1,STRG.24353.2,STRG.24353.3,STRG.24353.4	4
scaffold_13	spliced_intron	1238835	1239623	+	asmbl_10514,asmbl_10517,asmbl_10518,asmbl_10520,asmbl_10521,asmbl_10524,asmbl_10525,asmbl_10526	none	STRG.15478.1,STRG.15478.2,STRG.15478.4,STRG.15478.6,STRG.15478.7,Trinity_GG_8526_c0_g2_i3,blat.proc3829879.chain_204,blat.proc3829879.chain_205,blat.proc3829879.chain_207,blat.proc3829879.chain_208,blat.proc3829879.chain_209	11	STRG.15478.5,Trinity_GG_8526_c0_g1_i1,Trinity_GG_8526_c0_g2_i8,Trinity_GG_8526_c2_g1_i1,blat.proc3829879.chain_203,blat.proc3829879.chain_206,blat.proc3829879.chain_212	7
scaffold_21	alt_donor	1174735	1174736	-	asmbl_27412,asmbl_27413	none	STRG.23778.1,STRG.23778.2,Trinity_GG_30262_c0_g1_i2,Trinity_GG_30262_c0_g1_i3,blat.proc3829899.chain_856,blat.proc3829899.chain_857	6	STRG.23778.3	1
scaffold_5	spliced_intron	8539438	8539947	-	asmbl_45593,asmbl_45596,asmbl_45598,asmbl_45602	none	STRG.6191.1,STRG.6191.3,blat.proc3829889.chain_2246,blat.proc3829889.chain_2248,blat.proc3829889.chain_2253	5	blat.proc3829889.chain_2247,blat.proc3829889.chain_2249	2
scaffold_15	skipped_exon	15188079	15189128	+	asmbl_14675,asmbl_14676,asmbl_14682,asmbl_14685,asmbl_14688	none	STRG.18906.1,blat.proc3829879.chain_3474,blat.proc3829879.chain_3477,blat.proc3829879.chain_3479,blat.proc3829879.chain_3482,blat.proc3829879.chain_3484	6	STRG.18906.2,blat.proc3829879.chain_3471,blat.proc3829879.chain_3475,blat.proc3829879.chain_3476,blat.proc3829879.chain_3481	5
scaffold_3	alternate_exon	11324963	11326594	-	asmbl_39103	none	STRG.3560.1,Trinity_GG_18951_c0_g1_i2,blat.proc3829887.chain_3328	3	STRG.3560.2,Trinity_GG_18951_c0_g1_i3,blat.proc3829887.chain_3329	3
scaffold_27	alt_donor	9995059	9995060	+	asmbl_36514	none	STRG.29213.1	1	STRG.29213.2,blat.proc3829885.chain_2344	2
scaffold_16	alt_acceptor	3568783	3568784	-	asmbl_16157	none	STRG.19160.1,Trinity_GG_27773_c0_g1_i6,blat.proc3829897.chain_190	3	STRG.19160.2,STRG.19160.3,Trinity_GG_27773_c0_g1_i8,blat.proc3829897.chain_192	4
scaffold_23	starts_in_intron	2616100	2616100	-	asmbl_31475	none	STRG.25709.6	1	STRG.25709.1,STRG.25709.2,blat.proc3829899.chain_2843,blat.proc3829899.chain_2844,blat.proc3829899.chain_2845	5
scaffold_14	starts_in_intron	13380693	13380693	-	asmbl_13623	none	Trinity_GG_26912_c0_g1_i4,blat.proc3829895.chain_2366	2	STRG.17613.1,STRG.17613.2,blat.proc3829895.chain_2365,blat.proc3829895.chain_2367,blat.proc3829895.chain_2368	5
scaffold_6	retained_intron	18098902	18099238	+	asmbl_47761	none	Trinity_GG_4668_c0_g1_i3,blat.proc3829875.chain_874	2	blat.proc3829875.chain_873	1
scaffold_21	spliced_intron	6617614	6617692	+	asmbl_28691,asmbl_28693,asmbl_28694	none	STRG.24174.1,blat.proc3829883.chain_1357,blat.proc3829883.chain_1358,blat.proc3829883.chain_1359	4	blat.proc3829883.chain_1356	1
scaffold_4	alt_donor	14618979	14618980	+	asmbl_43232	none	STRG.5085.1,blat.proc3829873.chain_1430	2	STRG.5085.2	1
scaffold_1	skipped_exon	6752679	6753323	+	asmbl_1842	none	STRG.461.3,blat.proc3829871.chain_515	2	STRG.461.1,STRG.461.2,blat.proc3829871.chain_516,blat.proc3829871.chain_517	4
scaffold_8	starts_in_intron	10872557	10872557	+	asmbl_52172	none	Trinity_GG_5712_c0_g1_i2,blat.proc3829875.chain_2780	2	STRG.10301.1,blat.proc3829875.chain_2781	2
scaffold_24	spliced_intron	2787231	2787394	-	asmbl_32792	none	STRG.26467.1,blat.proc3829899.chain_3548	2	STRG.26467.2,Trinity_GG_31816_c0_g1_i2,blat.proc3829899.chain_3547	3
scaffold_6	retained_exon	12092341	12092391	-	asmbl_48733	none	STRG.7977.2	1	STRG.7977.1,blat.proc3829891.chain_217	2
scaffold_2	spliced_intron	6763081	6764405	+	asmbl_24517,asmbl_24522,asmbl_24523,asmbl_24526	none	STRG.2035.1,Trinity_GG_1102_c0_g1_i1,Trinity_GG_1102_c0_g1_i10,Trinity_GG_1102_c0_g1_i5,Trinity_GG_1102_c0_g1_i7,blat.proc3829871.chain_2005,blat.proc3829871.chain_2006,blat.proc3829871.chain_2008,blat.proc3829871.chain_2012	9	Trinity_GG_1102_c0_g1_i11,Trinity_GG_1102_c0_g1_i2,Trinity_GG_1102_c0_g1_i4,Trinity_GG_1102_c0_g1_i6,blat.proc3829871.chain_2007,blat.proc3829871.chain_2010,blat.proc3829871.chain_2011,blat.proc3829871.chain_2013	8
scaffold_8	retained_intron	9870650	9870748	+	asmbl_52108	none	blat.proc3829875.chain_2695	1	STRG.10225.2,STRG.10225.4,blat.proc3829875.chain_2691,blat.proc3829875.chain_2692,blat.proc3829875.chain_2694,blat.proc3829875.chain_2696,blat.proc3829875.chain_2697	7
scaffold_15	alt_donor	6793924	6793925	+	asmbl_14206	none	STRG.18289.1,Trinity_GG_10013_c0_g1_i2,blat.proc3829879.chain_2888	3	STRG.18289.2,STRG.18289.3,Trinity_GG_10013_c0_g1_i1,blat.proc3829879.chain_2887	4
scaffold_16	starts_in_intron	7226090	7226090	-	asmbl_16345,asmbl_16353	none	STRG.19382.4,STRG.19382.5	2	STRG.19382.1,STRG.19382.2,STRG.19382.3,STRG.19382.6,STRG.19382.7	5
scaffold_6	spliced_intron	8173665	8173844	-	asmbl_48472,asmbl_48473,asmbl_48474,asmbl_48475,asmbl_48476,asmbl_48478,asmbl_48479,asmbl_48480	none	STRG.7691.1,STRG.7691.2,Trinity_GG_21366_c0_g1_i14,Trinity_GG_21366_c0_g1_i3,blat.proc3829889.chain_3713,blat.proc3829889.chain_3716,blat.proc3829889.chain_3717,blat.proc3829889.chain_3719,blat.proc3829889.chain_3720,blat.proc3829889.chain_3721,blat.proc3829889.chain_3722,blat.proc3829889.chain_3724	12	Trinity_GG_21366_c0_g1_i5,blat.proc3829889.chain_3714	2
scaffold_15	spliced_intron	12133093	12133392	-	asmbl_15578	none	STRG.18680.1,blat.proc3829895.chain_3377	2	blat.proc3829895.chain_3378	1
scaffold_20	starts_in_intron	3253808	3253808	+	asmbl_25677	none	Trinity_GG_12694_c0_g1_i2,blat.proc3829883.chain_141	2	STRG.23034.1,Trinity_GG_12694_c0_g1_i1,blat.proc3829883.chain_142	3
scaffold_24	spliced_intron	8736275	8736426	-	asmbl_33085,asmbl_33088,asmbl_33089	none	STRG.26873.1,blat.proc3829901.chain_171,blat.proc3829901.chain_172,blat.proc3829901.chain_173	4	STRG.26873.2,blat.proc3829901.chain_170	2
scaffold_5	alt_acceptor	1064214	1064215	-	asmbl_45206	none	STRG.5651.1,blat.proc3829889.chain_1793	2	STRG.5651.2,blat.proc3829889.chain_1794	2
scaffold_8	retained_intron	7984216	7984342	-	asmbl_52930	none	blat.proc3829891.chain_2250	1	STRG.10087.1,blat.proc3829891.chain_2251,blat.proc3829891.chain_2252	3
scaffold_28	retained_intron	2198918	2199018	+	asmbl_38039,asmbl_38040	none	STRG.29368.3,Trinity_GG_16268_c1_g1_i2,blat.proc3829885.chain_2449	3	STRG.29368.4,Trinity_GG_16268_c1_g1_i1,blat.proc3829885.chain_2448	3
scaffold_14	ends_in_intron	2373830	2373830	-	asmbl_12923	none	blat.proc3829895.chain_1580	1	STRG.16839.1,STRG.16839.2,STRG.16839.3,STRG.16839.4,blat.proc3829895.chain_1581,blat.proc3829895.chain_1587	6
scaffold_3	alt_acceptor	10934626	10934627	-	asmbl_39077,asmbl_39078	none	STRG.3534.3,STRG.3534.4	2	STRG.3534.1,STRG.3534.2,blat.proc3829887.chain_3294,blat.proc3829887.chain_3295	4
scaffold_3	retained_intron	19821324	19822204	-	asmbl_39604,asmbl_39605,asmbl_39606	none	STRG.4095.1,STRG.4095.2,STRG.4095.3,Trinity_GG_19272_c0_g1_i5,Trinity_GG_19272_c0_g1_i6,blat.proc3829889.chain_159,blat.proc3829889.chain_160	7	blat.proc3829889.chain_161	1
scaffold_1	skipped_exon	6327569	6328959	+	asmbl_1821	none	STRG.428.1,Trinity_GG_267_c0_g1_i2,blat.proc3829871.chain_473	3	STRG.428.2,STRG.428.3,blat.proc3829871.chain_474	3
scaffold_5	retained_intron	13664802	13665247	-	asmbl_45928	none	blat.proc3829889.chain_2647	1	STRG.6576.1,STRG.6576.2,blat.proc3829889.chain_2644,blat.proc3829889.chain_2645	4
scaffold_4	alternate_exon	16481294	16481540	-	asmbl_41927	none	STRG.5226.3,blat.proc3829889.chain_1292	2	Trinity_GG_19942_c0_g2_i1,blat.proc3829889.chain_1291	2
scaffold_2	spliced_intron	14191448	14192045	-	asmbl_23581,asmbl_23582,asmbl_23583,asmbl_23584	none	STRG.2417.2,blat.proc3829887.chain_2207,blat.proc3829887.chain_2208,blat.proc3829887.chain_2209	4	STRG.2417.1,Trinity_GG_18310_c0_g1_i1,blat.proc3829887.chain_2210,blat.proc3829887.chain_2211,blat.proc3829887.chain_2212	5
scaffold_17	spliced_intron	9095446	9095758	-	asmbl_19201	none	STRG.20532.1,blat.proc3829897.chain_1473	2	blat.proc3829897.chain_1472	1
scaffold_16	retained_intron	14553404	14553521	+	asmbl_17490	none	Trinity_GG_10868_c0_g1_i3,blat.proc3829881.chain_689	2	STRG.19828.1,STRG.19828.2,STRG.19828.3,Trinity_GG_10868_c0_g1_i1,Trinity_GG_10868_c0_g1_i2,blat.proc3829881.chain_687,blat.proc3829881.chain_690	7
scaffold_5	alt_acceptor	16147959	16147960	+	asmbl_44711	none	STRG.6789.1	1	STRG.6789.3	1
scaffold_13	spliced_intron	16048795	16048914	+	asmbl_11523	none	STRG.16628.1	1	STRG.16628.3	1
scaffold_18	retained_exon	8866099	8866113	-	asmbl_20062,asmbl_20065,asmbl_20068	none	STRG.21541.3,blat.proc3829897.chain_2356,blat.proc3829897.chain_2357,blat.proc3829897.chain_2359	4	STRG.21541.2,blat.proc3829897.chain_2358,blat.proc3829897.chain_2360,blat.proc3829897.chain_2362	4
scaffold_1	ends_in_intron	4571525	4571525	-	asmbl_202,asmbl_208,asmbl_210,asmbl_213	none	STRG.277.5,Trinity_GG_17147_c0_g1_i12,blat.proc3829887.chain_130,blat.proc3829887.chain_131,blat.proc3829887.chain_137	5	STRG.277.1,blat.proc3829887.chain_133,blat.proc3829887.chain_135	3
scaffold_5	alt_donor	9072759	9072760	+	asmbl_44257	none	STRG.6235.3,blat.proc3829873.chain_2400	2	STRG.6235.2,blat.proc3829873.chain_2399	2
scaffold_21	alt_acceptor	256536	256537	-	asmbl_27317	none	blat.proc3829899.chain_791,blat.proc3829899.chain_794	2	STRG.23718.8,blat.proc3829899.chain_781	2
scaffold_8	alt_acceptor	9374708	9374709	-	asmbl_53021	none	STRG.10194.6	1	STRG.10194.3,STRG.10194.4,STRG.10194.5,blat.proc3829891.chain_2355,blat.proc3829891.chain_2356,blat.proc3829891.chain_2358	6
scaffold_19	alt_acceptor	3189254	3189255	-	asmbl_21297,asmbl_21298	none	STRG.21999.1,STRG.21999.3,blat.proc3829897.chain_2767,blat.proc3829897.chain_2769	4	STRG.21999.4,blat.proc3829897.chain_2770	2
scaffold_3026	spliced_intron	358	614	+	asmbl_40862	none	STRG.30791.1	1	STRG.30791.2,blat.proc3829885.chain_3636	2
scaffold_5	retained_exon	9083285	9083410	+	asmbl_44259,asmbl_44262,asmbl_44263,asmbl_44264,asmbl_44266,asmbl_44267,asmbl_44268	none	STRG.6237.1,STRG.6237.2,STRG.6237.5,blat.proc3829873.chain_2418,blat.proc3829873.chain_2419,blat.proc3829873.chain_2421,blat.proc3829873.chain_2422,blat.proc3829873.chain_2426	8	STRG.6237.3,STRG.6237.4,blat.proc3829873.chain_2423	3
scaffold_27	starts_in_intron	3967755	3967755	-	asmbl_36893	none	blat.proc3829901.chain_2036	1	blat.proc3829901.chain_2035	1
scaffold_6	starts_in_intron	16269134	16269134	+	asmbl_47628	none	Trinity_GG_4581_c0_g2_i1,blat.proc3829875.chain_731	2	STRG.8337.1,blat.proc3829875.chain_730	2
scaffold_10	alt_donor	918480	918481	+	asmbl_4160,asmbl_4162	none	STRG.11958.2,blat.proc3829877.chain_644	2	STRG.11958.1,blat.proc3829877.chain_641,blat.proc3829877.chain_642,blat.proc3829877.chain_643,blat.proc3829877.chain_645	5
scaffold_8	starts_in_intron	11741739	11741739	+	asmbl_52246	none	blat.proc3829875.chain_2896	1	blat.proc3829875.chain_2894,blat.proc3829875.chain_2895	2
scaffold_9	retained_intron	11851343	11852018	-	asmbl_55303	none	Trinity_GG_23351_c1_g1_i2,blat.proc3829891.chain_3612	2	STRG.11492.1,blat.proc3829891.chain_3611	2
scaffold_17	alt_acceptor	4745016	4745017	+	asmbl_17922	none	STRG.20196.2	1	STRG.20196.1,Trinity_GG_11035_c0_g1_i1,blat.proc3829881.chain_960	3
scaffold_27	starts_in_intron	3022097	3022097	+	asmbl_36127,asmbl_36132	none	Trinity_GG_15901_c0_g1_i13,blat.proc3829885.chain_1777,blat.proc3829885.chain_1778	3	STRG.28769.1,STRG.28769.2,blat.proc3829885.chain_1779,blat.proc3829885.chain_1780,blat.proc3829885.chain_1782	5
scaffold_4	skipped_exon	10451857	10452576	-	asmbl_41596	none	blat.proc3829889.chain_838	1	STRG.4795.1,STRG.4795.2,STRG.4795.3,blat.proc3829889.chain_833,blat.proc3829889.chain_835,blat.proc3829889.chain_839	6
scaffold_4	retained_exon	5221540	5221661	-	asmbl_41307	none	STRG.4411.2,blat.proc3829889.chain_518	2	STRG.4411.1,Trinity_GG_19481_c0_g1_i2,blat.proc3829889.chain_517	3
scaffold_8	starts_in_intron	1344830	1344830	+	asmbl_51679	none	Trinity_GG_5365_c1_g1_i1,blat.proc3829875.chain_2148	2	STRG.9754.1	1
scaffold_7	retained_intron	1233710	1235447	+	asmbl_50470,asmbl_50485	none	STRG.8627.2,STRG.8627.8,Trinity_GG_4740_c0_g1_i15,blat.proc3829875.chain_1049,blat.proc3829875.chain_1052	5	STRG.8627.3,STRG.8627.7,STRG.8627.9,Trinity_GG_4740_c0_g1_i16,blat.proc3829875.chain_1042	5
scaffold_12	alt_acceptor	6407211	6407212	+	asmbl_8638	none	STRG.14727.2	1	STRG.14727.1,blat.proc3829877.chain_3212	2
scaffold_8	retained_intron	12625677	12626028	-	asmbl_53215,asmbl_53216	none	blat.proc3829891.chain_2559,blat.proc3829891.chain_2560	2	STRG.10429.1,blat.proc3829891.chain_2557,blat.proc3829891.chain_2558	3
scaffold_5	retained_intron	10853540	10853712	+	asmbl_44369,asmbl_44373	none	STRG.6350.4,blat.proc3829873.chain_2514	2	STRG.6350.1,STRG.6350.3,blat.proc3829873.chain_2511,blat.proc3829873.chain_2512,blat.proc3829873.chain_2513,blat.proc3829873.chain_2515,blat.proc3829873.chain_2516	7
scaffold_11	starts_in_intron	853460	853460	+	asmbl_5269	none	blat.proc3829877.chain_1718	1	STRG.13271.1,Trinity_GG_7265_c0_g1_i1,blat.proc3829877.chain_1715,blat.proc3829877.chain_1716	4
scaffold_3	retained_intron	10628322	10628697	+	asmbl_40236,asmbl_40237	none	blat.proc3829871.chain_3604,blat.proc3829871.chain_3606	2	STRG.3509.3,blat.proc3829871.chain_3607	2
scaffold_5	retained_exon	14262395	14262430	+	asmbl_44582	none	blat.proc3829873.chain_2765	1	blat.proc3829873.chain_2769	1
scaffold_26	ends_in_intron	6704737	6704737	-	asmbl_34976	none	blat.proc3829901.chain_1525	1	STRG.28358.1,STRG.28358.2,STRG.28358.3,blat.proc3829901.chain_1521,blat.proc3829901.chain_1524	5
scaffold_15	spliced_intron	15188079	15188653	+	asmbl_14677,asmbl_14679,asmbl_14683,asmbl_14684,asmbl_14691,asmbl_14692	none	STRG.18906.2,STRG.18906.3,blat.proc3829879.chain_3471,blat.proc3829879.chain_3475,blat.proc3829879.chain_3476,blat.proc3829879.chain_3481	6	blat.proc3829879.chain_3472,blat.proc3829879.chain_3478,blat.proc3829879.chain_3480,blat.proc3829879.chain_3485,blat.proc3829879.chain_3486	5
scaffold_1	retained_intron	17725702	17726002	+	asmbl_2515	none	STRG.1239.2	1	STRG.1239.1,Trinity_GG_733_c0_g1_i1,Trinity_GG_733_c0_g1_i2,Trinity_GG_733_c0_g1_i3,blat.proc3829871.chain_1301,blat.proc3829871.chain_1302,blat.proc3829871.chain_1303	7
scaffold_1	retained_exon	12463815	12463898	-	asmbl_728	none	STRG.864.1	1	STRG.864.2	1
scaffold_12	retained_intron	14173452	14173745	+	asmbl_9030,asmbl_9031,asmbl_9032	none	STRG.15236.1,STRG.15236.2,Trinity_GG_8405_c0_g1_i9,blat.proc3829877.chain_3705,blat.proc3829877.chain_3706,blat.proc3829877.chain_3708	6	blat.proc3829877.chain_3707	1
scaffold_7	ends_in_intron	16817145	16817145	-	asmbl_50236	none	STRG.9585.2	1	blat.proc3829891.chain_1830	1
scaffold_20	alt_donor	4377165	4377166	+	asmbl_25738	none	STRG.23104.1,blat.proc3829883.chain_242	2	STRG.23104.2,blat.proc3829883.chain_240	2
scaffold_11	spliced_intron	1985477	1985515	+	asmbl_5308	none	STRG.13350.1	1	blat.proc3829893.chain_1765	1
scaffold_2	alternate_exon	2884804	2890249	-	asmbl_22954,asmbl_22956,asmbl_22958,asmbl_22960,asmbl_22962,asmbl_22963,asmbl_22965	none	STRG.1733.1,STRG.1733.2,STRG.1733.3,blat.proc3829887.chain_1492,blat.proc3829887.chain_1493,blat.proc3829887.chain_1494,blat.proc3829887.chain_1495,blat.proc3829887.chain_1497,blat.proc3829887.chain_1498,blat.proc3829887.chain_1500	10	blat.proc3829887.chain_1496,blat.proc3829887.chain_1499	2
scaffold_1	alt_acceptor	12109032	12109033	+	asmbl_2159	none	STRG.824.2,blat.proc3829871.chain_847	2	Trinity_GG_480_c0_g1_i1,blat.proc3829871.chain_850,blat.proc3829871.chain_851	3
scaffold_1	retained_intron	5735334	5735977	+	asmbl_1760,asmbl_1763	none	Trinity_GG_251_c0_g1_i1,blat.proc3829871.chain_444,blat.proc3829871.chain_445	3	STRG.380.1,STRG.380.2,STRG.380.3,blat.proc3829871.chain_443,blat.proc3829871.chain_446	5
scaffold_10	alt_donor	2742255	2742256	+	asmbl_4284	none	STRG.12084.1,blat.proc3829877.chain_778	2	STRG.12084.2,blat.proc3829877.chain_777	2
scaffold_13	retained_intron	7668097	7668467	+	asmbl_11053	none	STRG.16037.1,Trinity_GG_8821_c1_g1_i1,blat.proc3829879.chain_774	3	STRG.16037.2	1
scaffold_20	retained_exon	2392380	2392427	+	asmbl_25638	none	STRG.22959.1	1	STRG.22959.2	1
scaffold_7	alt_acceptor	15031504	15031505	-	asmbl_50171	none	STRG.9514.3	1	STRG.9514.1,STRG.9514.2	2
scaffold_8	alt_acceptor	9903934	9903935	-	asmbl_53064	none	blat.proc3829891.chain_2394	1	STRG.10235.1,Trinity_GG_22721_c0_g1_i2,blat.proc3829891.chain_2393,blat.proc3829891.chain_2395	4
scaffold_8	alt_acceptor	8901327	8901328	-	asmbl_52975	none	STRG.10137.3	1	STRG.10137.1,blat.proc3829891.chain_2317	2
scaffold_12	alternate_exon	9000995	9001707	-	asmbl_7762	none	STRG.14892.1,Trinity_GG_25309_c0_g1_i2,blat.proc3829893.chain_3266	3	blat.proc3829893.chain_3268	1
scaffold_1	starts_in_intron	14965886	14965886	+	asmbl_2395	none	Trinity_GG_613_c0_g1_i1,blat.proc3829871.chain_1098	2	STRG.1069.1,STRG.1069.2,blat.proc3829871.chain_1099	3
scaffold_5	alternate_exon	12472110	12472197	-	asmbl_45836	none	STRG.6477.2,blat.proc3829889.chain_2532	2	STRG.6477.1,blat.proc3829889.chain_2533	2
scaffold_22	alt_acceptor	4325466	4325467	-	asmbl_30012	none	STRG.24836.1,blat.proc3829899.chain_1997	2	STRG.24836.2,blat.proc3829899.chain_1998	2
scaffold_3	retained_intron	5951813	5951900	-	asmbl_38838,asmbl_38841	none	STRG.3255.6,blat.proc3829887.chain_3048,blat.proc3829887.chain_3049	3	STRG.3255.1,STRG.3255.2,STRG.3255.3,STRG.3255.5,STRG.3255.7,blat.proc3829887.chain_3044,blat.proc3829887.chain_3045,blat.proc3829887.chain_3046,blat.proc3829887.chain_3047	9
scaffold_3	spliced_intron	13647877	13648874	-	asmbl_39225	none	STRG.3705.3,Trinity_GG_19021_c0_g1_i3,blat.proc3829887.chain_3435	3	STRG.3705.1,Trinity_GG_19021_c0_g1_i2,blat.proc3829887.chain_3437	3
scaffold_21	retained_intron	10097905	10097938	+	asmbl_28866,asmbl_28868	none	STRG.24457.2,STRG.24457.3	2	STRG.24457.1	1
scaffold_21	starts_in_intron	5139735	5139735	-	asmbl_27638	none	STRG.24046.7	1	STRG.24046.3	1
scaffold_2	alt_donor	9140288	9140289	-	asmbl_23372,asmbl_23373	none	STRG.2160.1,STRG.2160.2	2	blat.proc3829887.chain_2071,blat.proc3829887.chain_2072	2
scaffold_11	retained_intron	8716123	8716595	-	asmbl_6858	none	blat.proc3829893.chain_2332	1	STRG.13887.1,blat.proc3829893.chain_2333	2
scaffold_3	starts_in_intron	4277707	4277707	+	asmbl_39952	none	STRG.3122.3,blat.proc3829871.chain_3228	2	STRG.3122.1,STRG.3122.2,blat.proc3829871.chain_3229,blat.proc3829871.chain_3230	4
scaffold_2	skipped_exon	5706732	5707568	-	asmbl_23180	none	STRG.1957.1,blat.proc3829887.chain_1851	2	blat.proc3829887.chain_1853	1
scaffold_16	skipped_exon	14190504	14192190	-	asmbl_16618	none	STRG.19804.1,blat.proc3829897.chain_688	2	STRG.19804.2,STRG.19804.3,blat.proc3829897.chain_687,blat.proc3829897.chain_689	4
scaffold_7	starts_in_intron	8486094	8486094	+	asmbl_50882	none	Trinity_GG_5016_c0_g1_i1,blat.proc3829875.chain_1489	2	STRG.9065.1	1
scaffold_5	spliced_intron	10384008	10384137	-	asmbl_45734	none	STRG.6330.2	1	STRG.6330.1	1